-- dump date   	20240514_000658
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
5874000001	SEQ_END	SEQ_END	NC_011129.2	2592520	2592520	DR	NC_011129.2; contig end	2592520..2592520	Theileria annulata	<NA>
5874000002	SEQ_END	SEQ_END	NW_001091930.1	15378	15378	DR	NW_001091930.1; contig end	15378..15378	Theileria annulata	<NA>
5874000003	SEQ_END	SEQ_END	NW_001091931.1	11011	11011	DR	NW_001091931.1; contig end	11011..11011	Theileria annulata	<NA>
5874000004	SEQ_END	SEQ_END	NW_001091932.1	12928	12928	DR	NW_001091932.1; contig end	12928..12928	Theileria annulata	<NA>
5874000005	SEQ_END	SEQ_END	NC_011099.1	1979170	1979170	DR	NC_011099.1; contig end	1979170..1979170	Theileria annulata	<NA>
5874000006	SEQ_END	SEQ_END	NC_011100.1	1898942	1898942	DR	NC_011100.1; contig end	1898942..1898942	Theileria annulata	<NA>
5874000007	SEQ_END	SEQ_END	NC_011098.1	1842271	1842271	DR	NC_011098.1; contig end	1842271..1842271	Theileria annulata	<NA>
5874000008	SEQ_END	SEQ_END	NT_167255.1	5905	5905	DR	NT_167255.1; contig end	5905..5905	Theileria annulata	<NA>
TA17495	CDS	TA17495	NC_011129.2	1	704	R	SfiI-subtelomeric fragment related protein family member, putative	complement(<1..704)	Theileria annulata	3864312
TA17500	CDS	TA17500	NC_011129.2	2448	4289	R	TapBAC05a05.q1k.C.cand.2 - score = 17.54; SfiI-subtelomeric fragment related protein family member, putative	complement(join(2448..2675,2687..2977,3054..4289))	Theileria annulata	3864313
TA17505	CDS	TA17505	NC_011129.2	4455	12653	R	TapBAC05a05.q1k.C.cand.1 - score = 157.72; Signal peptide predicted for TA17505 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.887 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	complement(4455..12653)	Theileria annulata	3864314
TA09760	CDS	TA09760	NC_011129.2	14409	15083	R	Tap465h02.q1ca.cand.26 - score = 13.62; SMART pfam:PS_Dcarbxylase (PF02666) at aa 38-209, E()=6.20e-28; 1 probable transmembrane helix predicted for TA09760 by TMHMM2.0 at aa 23-45; Signal anchor predicted for TA09760 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues 28 and 29; phosphatidylserine decarboxylase, putative	complement(14409..15083)	Theileria annulata	3864343
TA09756	CDS	TA09756	NC_011129.2	15519	16016	D	Signal peptide predicted for TA09756 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.845 between residues 18 and 19; GPI-Anchor Signal predicted for TA09756 by DGPI v2.04 with cleavage site probability 1.72 near 145; uncharacterized protein	15519..16016	Theileria annulata	3864342
TA09755	CDS	TA09755	NC_011129.2	16715	17212	D	Tap465h02.q1ca.C.cand.2 - score = 9.39; Signal peptide predicted for TA09755 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.665 between residues 20 and 21; uncharacterized protein	16715..17212	Theileria annulata	3864341
TA09750	CDS	TA09750	NC_011129.2	17321	18259	R	Tap465h02.q1ca.cand.25 - score = 24.00; SMART CYCLIN (SM0385) at aa 20-112, E()=7.05e-06; 134-225, E()=6.36e-01; cyclin, putative	complement(join(17321..17431,17537..17633,17663..17856,17887..18024,18055..18159,18191..18259))	Theileria annulata	3864340
TA09745	CDS	TA09745	NC_011129.2	19682	20645	R	Tap465h02.q1ca.cand.24 - score = 23.66; SMART RING (SM0184) at aa 218-263, E()=2.74e-02; uncharacterized protein	complement(join(19682..19947,19977..20469,20502..20645))	Theileria annulata	3864339
TA09740	CDS	TA09740	NC_011129.2	20925	24083	R	SMART 2 transmembrane domains at aa 431-453 and 461-488; 2 probable transmembrane helices predicted for TA09740 by TMHMM2.0 at aa 431-453 and 466-488; uncharacterized protein	complement(join(20925..21193,21286..21386,21423..21517,21837..22115,22219..22276,22334..22420,22453..22492,22542..22677,22707..22949,23038..23097,23193..24083))	Theileria annulata	3864338
TA09735	CDS	TA09735	NC_011129.2	24180	25901	D	Tap465h02.q1ca.C.cand.4 - score = 15.47; SMART pfam:tRNA-synt_1 (PF00133) at aa 57-468, E()=2.10e-05; methionyl-tRNA synthetase, putative	24180..25901	Theileria annulata	3864337
TA09730	CDS	TA09730	NC_011129.2	26499	27412	R	Tap465h02.q1ca.cand.22 - score = 16.94; uncharacterized protein	complement(join(26499..26729,26814..26911,26943..27030,27118..27222,27257..27412))	Theileria annulata	3864336
TA09725	CDS	TA09725	NC_011129.2	27626	29456	R	SMART 2 transmembrane domains at aa 95-117 and 179-201; 2 probable transmembrane helices predicted for TA09725 by TMHMM2.0 at aa 95-117 and 179-201; uncharacterized protein	complement(join(27626..27764,27795..27891,27921..28118,28535..28807,29216..29456))	Theileria annulata	3864335
TA09720	CDS	TA09720	NC_011129.2	29587	31299	D	Tap465h02.q1ca.C.cand.5 - score = 9.33; 1 probable transmembrane helix predicted for TA09720 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09720 by SignalP 2.0 HMM (Signal peptide probability 0.069, signal anchor probability 0.925) with cleavage site probability 0.033 between residues 28 and 29; uncharacterized protein	join(29587..29668,29698..29943,30478..30581,30964..31299)	Theileria annulata	3864334
TA09715	CDS	TA09715	NC_011129.2	31429	32064	D	Tap465h02.q1ca.C.cand.6 - score = 7.21; uncharacterized protein	join(31429..31722,31798..32064)	Theileria annulata	3864333
TA09710	CDS	TA09710	NC_011129.2	32569	34767	D	SMART 2 RRM (SM0360) at aa 536-601, E()=4.49e-17 and 620-689, E()=1.91e-11; uncharacterized protein	32569..34767	Theileria annulata	3864332
TA09705	CDS	TA09705	NC_011129.2	35529	37628	R	Tap465h02.q1ca.cand.20 - score = 9.08; uncharacterized protein	complement(join(35529..35636,35672..35804,36389..36902,37140..37217,37364..37628))	Theileria annulata	3864331
TA09700	CDS	TA09700	NC_011129.2	38037	38660	R	Tap465h02.q1ca.cand.19 - score = 11.60; SMART RAB (SM0175) at aa 10-174, E()=1.66e-93; small GTPase (Rab11)	complement(38037..38660)	Theileria annulata	3864330
TA09695	CDS	TA09695	NC_011129.2	39215	39634	D	Tap465h02.q1ca.C.cand.8 - score = 9.09; SMART pfam:Ribosomal_S8 (PF00410) at aa 23-122, E()=7.90e-05; 30S ribosomal protein S8, putative	join(39215..39397,39428..39634)	Theileria annulata	3864329
TA09690	CDS	TA09690	NC_011129.2	39696	41536	D	Tap465h02.q1ca.C.cand.9 - score = 28.09; SMART MIF4G (SM0543) at aa 101-284, E()-1.24e-24; MA3 (SM0544) at aa 406-511, E()=6.25e-21; cell-cycle-control protein (translation regulation), putative	join(39696..39813,39870..41536)	Theileria annulata	3864328
TA09685	CDS	TA09685	NC_011129.2	42287	43567	R	Tap465h02.q1ca.cand.18 - score = 14.98; SMART 2 RRM (SM0360) at aa 10-78, E()=5.08e-16; 177-249, E()=4.52e-22; WW (SM0456) at aa 125-157, E()=1.32e-08; uncharacterized protein	complement(join(42287..42874,43150..43383,43502..43567))	Theileria annulata	3864092
TA09680	CDS	TA09680	NC_011129.2	44253	46847	R	SMART pfam:Exo_endo_phos (PF03372) at aa 5-364, E()=3.10e-23; sphingomyelinase, putative	complement(join(44253..44513,44659..44788,44896..45391,45621..45833,46223..46847))	Theileria annulata	3864091
TA09675	CDS	TA09675	NC_011129.2	48407	49027	D	Tap465h02.q1ca.C.cand.10 - score = 15.35; Signal peptide predicted for TA09675 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.965 between residues 17 and 18; uncharacterized protein	48407..49027	Theileria annulata	3864090
TA09670	CDS	TA09670	NC_011129.2	49214	50032	R	Tap465h02.q1ca.cand.17 - score = 9.65; Signal peptide predicted for TA09670 by SignalP 2.0 HMM (Signal peptide probability 0.682, signal anchor probability 0.000) with cleavage site probability 0.519 between residues 20 and 21; uncharacterized protein	complement(49214..50032)	Theileria annulata	3864089
TA09665	CDS	TA09665	NC_011129.2	50223	52519	D	Tap465h02.q1ca.C.cand.11 - score = 9.54; SMART pfam:ribonuc_red_sm (PF00268) at aa 18-299, E()=3.20e-11; 1 probable transmembrane helix predicted for TA09665 by TMHMM2.0 at aa 175-197; ribonucleoside reductase, putative	join(50223..50306,50340..50372,50487..50623,50716..50920,51811..52153,52323..52519)	Theileria annulata	3864088
TA09660	CDS	TA09660	NC_011129.2	52787	54043	R	SMART pfam:EMP24_GP25L (PF01105) at aa 4.00e-06; 2 probable transmembrane helices predicted for TA09660 by TMHMM2.0 at aa 10-29 and 176-198; Signal peptide predicted for TA09660 by SignalP 2.0 HMM (Signal peptide probability 0.728, signal anchor probability 0.242) with cleavage site probability 0.670 between residues 23 and 24; GPI-Anchor Signal predicted for TA09660 by DGPI v2.04 with cleavage site probability 0.11019999 near 173; vesicle transport protein, putative	complement(join(52787..52972,53251..53421,53656..53782,53901..54043))	Theileria annulata	3864087
TA09655	CDS	TA09655	NC_011129.2	54191	54915	D	Tap465h02.q1ca.C.cand.12 - score = 14.79; uncharacterized protein	join(54191..54394,54547..54915)	Theileria annulata	3864086
TA09650	CDS	TA09650	NC_011129.2	56303	57709	D	Tap465h02.q1ca.C.cand.13 - score = 11.97; uncharacterized protein	join(56303..56420,56494..56567,56749..57121,57312..57370,57402..57476,57530..57709)	Theileria annulata	3864085
TA09645	CDS	TA09645	NC_011129.2	58326	60463	R	Tap465h02.q1ca.cand.16 - score = 10.16; SMART pfam:BPL_LipA_LipB (PF03099) at aa 52-170, E()=4.30e-15; lipoate-protein ligase, putative	complement(join(58326..58390,58466..58694,58798..58869,59245..59319,59370..59440,59552..59702,59735..59787,59909..60008,60197..60463))	Theileria annulata	3864084
TA09640	CDS	TA09640	NC_011129.2	60829	64173	R	Tap465h02.q1ca.cand.15 - score = 7.21; uncharacterized protein	complement(join(60829..60938,61205..61408,61671..61813,61919..61970,62064..62161,62246..62334,62552..62670,62816..63109,63682..63732,63889..63955,64060..64173))	Theileria annulata	3864083
TA09635	CDS	TA09635	NC_011129.2	64296	65903	D	Tap465h02.q1ca.C.cand.14 - score = 19.83; uncharacterized protein	join(64296..64421,64538..64758,64841..64978,65108..65903)	Theileria annulata	3864082
TA09630	CDS	TA09630	NC_011129.2	65960	66121	R	cyclin-dependent kinase regulatory subunit, putative	complement(65960..66121)	Theileria annulata	3864081
TA09625	CDS	TA09625	NC_011129.2	66971	70502	R	SMART pfam:GTP_EFTU (PF00009) at aa 123-280, E()=1.40e-06; uncharacterized protein	complement(join(66971..67676,67707..68103,68520..69461,69834..69915,69949..70051,70157..70272,70365..70502))	Theileria annulata	3864080
TA09620	CDS	TA09620	NC_011129.2	70615	74154	R	Tap465h02.q1ca.cand.13 - score = 52.74; SMART PH (SM0233) at aa 749-938, E()=9.43e-01; uncharacterized protein	complement(70615..74154)	Theileria annulata	3864079
TA09615	CDS	TA09615	NC_011129.2	75362	79330	R	Tap465h02.q1ca.cand.12 - score = 69.10; uncharacterized protein	complement(75362..79330)	Theileria annulata	3864078
TA09610	CDS	TA09610	NC_011129.2	80506	85340	R	Tap465h02.q1ca.cand.11 - score = 72.47; SMART 3 TPR (SM0028) domains at aa 29-62, E()=8.77e+01; 171-204, E()=2.55e-02; 915-948, E()=3.27e+00; uncharacterized protein	complement(join(80506..85005,85230..85340))	Theileria annulata	3864077
TA09605	CDS	TA09605	NC_011129.2	85606	87352	R	SMART SFM (SM0500) at aa 79-121, E()=7.40e-03 and pfam:Prp18 (PF02840) at aa 261-408, E()=9.60e-47; pre-mRNA splicing protein (Prp18)	complement(join(85606..86059,86172..86453,86537..86597,86655..86692,86722..86805,86873..86954,86987..87044,87086..87210,87304..87352))	Theileria annulata	3864076
TA09600	CDS	TA09600	NC_011129.2	87783	91313	D	SMART 5 transmembrane domains at aa 139-161, 232-250, 371-388, 422-444 and 451-468; 6 probable transmembrane helices predicted for TA09600 by TMHMM2.0 at aa 139-161, 232-250, 371-388, 422-444, 451-468 and 899-921; Tpr-related protein family member, putative	join(87783..88206,88500..88910,89003..89241,89276..89613,89664..90711,90834..91313)	Theileria annulata	3864075
TA09590	CDS	TA09590	NC_011129.2	91424	93040	R	Tap465h02.q1ca.cand.8 - score = 24.51; SMART pfam:ldh (PF00056) at aa 5-198, E()=2.20e-12; pfam:ldh_C (PF02866) at aa 200-366, E()=2.80e-42; high sequence similarity between lactate- and malate- dehydrogenases but distinguished by comparison to respective enzyme sequences from S. pombe; L-lactate dehydrogenase, putative	complement(join(91424..92140,92434..92568,92619..92746,92917..93040))	Theileria annulata	3864074
TA09585	CDS	TA09585	NC_011129.2	93453	94201	R	Tap465h02.q1ca.cand.7 - score = 14.20; uncharacterized protein	complement(join(93453..93880,93988..94201))	Theileria annulata	3864073
TA09580	CDS	TA09580	NC_011129.2	94549	96701	D	SMART 2 transmembrane domains aa 15-37 and 156-178; uncharacterized protein	join(94549..94571,94686..94822,95016..95195,96181..96701)	Theileria annulata	3864522
TA09575	CDS	TA09575	NC_011129.2	97516	99618	R	Tap465h02.q1ca.cand.6 - score = 50.66; uncharacterized protein	complement(97516..99618)	Theileria annulata	3864521
TA09570	CDS	TA09570	NC_011129.2	99620	100824	R	SMART 3 EGF (SM0181) domains at aa 23-60, E()=1.00e+01; 78-112, E()=1.47e+01; 117-156, E()=3.57e+01; 1 transmembrane domain at aa 191-213; 1 probable transmembrane helix predicted for TA09570 by TMHMM2.0 at aa 191-213; uncharacterized protein	complement(join(99620..99729,99763..99810,99841..100095,100566..100824))	Theileria annulata	3864520
TA09565	CDS	TA09565	NC_011129.2	100997	101944	D	Tap465h02.q1ca.C.cand.17 - score = 16.90; SMART pfam:Acetyltransf (PF00583) at aa 222-304, E()=3.50e-03; uncharacterized protein	100997..101944	Theileria annulata	3864519
TA09560	CDS	TA09560	NC_011129.2	102295	112476	D	Tap465h02.q1ca.C.cand.18 - score = 261.97; SMART 2 transmembrane domains at aa 1475-1497, 1510-1532; 2 probable transmembrane helices predicted for TA09560 by TMHMM2.0 at aa 1475-1497 and 1510-1532; uncharacterized protein	102295..112476	Theileria annulata	3864518
TA09555	CDS	TA09555	NC_011129.2	112797	119969	D	SMART ANK (SM0248) at aa 895-925, E()=2.39e+02; 930-960, E()=2.92e-02; 964-996, E()=1.21e+01; HECTc (SM0119) at aa 1924-2357, E()=3.76e-13; uncharacterized protein	join(112797..119729,119790..119969)	Theileria annulata	3864517
TA09550	CDS	TA09550	NC_011129.2	120108	120761	D	Tap465h02.q1ca.C.cand.19 - score = 14.50; SfiI-subtelomeric fragment related protein family member, putative	120108..120761	Theileria annulata	3864516
TA09545	CDS	TA09545	NC_011129.2	121010	121844	R	Tap465h02.q1ca.cand.4 - score = 18.92; SMART POP4 (SM0538) at aa 159-250, E()=3.42e-13; ribonuclease P subunit, putative	complement(join(121010..121177,121251..121844))	Theileria annulata	3864515
TA09540	CDS	TA09540	NC_011129.2	122118	122858	R	Tap465h02.q1ca.cand.3 - score = 34.74; uncharacterized protein	complement(122118..122858)	Theileria annulata	3864514
TA09535	CDS	TA09535	NC_011129.2	122936	124182	R	Tap465h02.q1ca.cand.3 - score = 34.74; uncharacterized protein	complement(join(122936..123610,123704..124042,124123..124182))	Theileria annulata	3864513
TA09530	CDS	TA09530	NC_011129.2	124667	126492	D	Tap465h02.q1ca.C.cand.20 - score = 14.22; SMART 5 transmembrane domains at aa 51-73, 267-286, 291-313, 325-347 and 362-384; pfam:CDP-OH_P_transf (PF01066) at aa 90-257, E()=1.50e-04; 7 probable transmembrane helices predicted for TA09530 by TMHMM2.0 at aa 51-73, 178-200, 232-254, 267-286, 291-313, 325-347 and 362-384; ethanolamine phosphotransferase, putative	join(124667..124807,124903..125052,125210..125368,125447..125563,125683..125840,125901..125971,126074..126492)	Theileria annulata	3864512
TA09525	CDS	TA09525	NC_011129.2	126549	127562	R	Tap465h02.q1ca.cand.2 - score = 21.57; uncharacterized protein	complement(126549..127562)	Theileria annulata	3864511
TA09520	CDS	TA09520	NC_011129.2	128076	128330	R	Tap465h02.q1ca.cand.1 - score = 7.05; SMART 1 transmembrane domain at aa 33-55; 1 probable transmembrane helix predicted for TA09520 by TMHMM2.0 at aa 33-55; Signal anchor predicted for TA09520 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.928) with cleavage site probability 0.000 between residues 47 and 48; uncharacterized protein	complement(128076..128330)	Theileria annulata	3864510
TA09515	CDS	TA09515	NC_011129.2	128647	129230	D	Tap465h02.q1ca.C.cand.21 - score = 45.52; SMART ZnF_U1 (SM0451) at aa 1-37, E()=8.47e-07; RNA-binding protein (U1 snRNP-like), putative	join(128647..128764,128893..129230)	Theileria annulata	3864509
TA09510	CDS	TA09510	NC_011129.2	129465	131036	D	Tap465h02.q1ca.C.cand.21 - score = 45.52; SfiI-subtelomeric fragment related protein family member, putative	129465..131036	Theileria annulata	3864508
TA09505	CDS	TA09505	NC_011129.2	131537	133108	D	Tap465h02.q1ca.C.cand.21 - score = 45.52; SfiI-subtelomeric fragment related protein family member, putative	131537..133108	Theileria annulata	3864507
TA16700	CDS	TA16700	NC_011129.2	133664	134866	D	Tap821d03.p1c.C.cand.2 - score = 25.82; SMART pfam:DUF529 (PF04385) at aa 28-155, E()=4.50e-07; SfiI-subtelomeric fragment related protein family member, putative	133664..134866	Theileria annulata	3863677
TA16695	CDS	TA16695	NC_011129.2	135117	139601	R	Tap821d03.p1c.cand.110 - score = 89.30; SMART 3 transmembrane domains at aa 183-205, 552-569 and 701-723; STYKc (SM00221) at aa 964-1404, E()=1.34e-04; 3 probable transmembrane helices predicted for TA16695 by TMHMM2.0 at aa 183-205, 552-569 and 701-723; serine/threonine protein kinase, putative	complement(join(135117..135449,135482..135734,135853..136134,136228..139601))	Theileria annulata	3863676
TA16690	CDS	TA16690	NC_011129.2	140584	141667	D	SMART KH (SM0322) at aa 165-254, E()=5.44e-09; 2 ZnF_C2H2 (SM0343) at aa 286-302, E()=9.87e-02; 314-330, E()=5.04e-02; uncharacterized protein	join(140584..141108,141209..141667)	Theileria annulata	3863675
TA16680	CDS	TA16680	NC_011129.2	141874	144961	R	SMART pfam:DEAD (PF00270) at aa 136-341, E()=2.30e-02; HELICc (SM00490) at aa 355-446, E()=4.81e-15; Signal peptide predicted for TA16680 by SignalP 2.0 HMM (Signal peptide probability 0.916, signal anchor probability 0.000) with cleavage site probability 0.848 between residues 15 and 16; GPI-Anchor Signal predicted for TA16680 by DGPI v2.04, no cleavage site predicted; ATP-dependent RNA helicase, putative	complement(join(141874..142161,142249..142336,142387..142568,142598..142965,143041..143494,143546..143710,143779..143856,143928..144059,144187..144471,144530..144961))	Theileria annulata	3864033
TA16675	CDS	TA16675	NC_011129.2	145373	146374	D	Tap821d03.p1c.C.cand.4 - score = 21.73; uncharacterized protein	145373..146374	Theileria annulata	3864032
TA16670	CDS	TA16670	NC_011129.2	147293	149315	D	Tap821d03.p1c.C.cand.5 - score = 39.79; SMART 12 transmembrane domains at aa 21-43, 63-82, 89-108, 113-132, 144-166, 179-201, 243-265, 275-297, 310-332, 337-359, 379-398 and 434-456; 12 probable transmembrane helices predicted for TA16670 by TMHMM2.0 at aa 21-43, 63-82, 89-108, 113-132, 144-166, 179-201, 243-265, 275-297, 310-332, 337-359, 379-398 and 434-456; uncharacterized protein	join(147293..147631,147825..148229,148261..148456,148578..148780,148834..149059,149230..149315)	Theileria annulata	3864031
TA16665	CDS	TA16665	NC_011129.2	149660	151048	D	SMART pfam:GATase (PF00117) at aa 20-266, E()=9.80e-03; uncharacterized protein	join(149660..149692,149724..149895,149984..150123,150229..150344,150385..150437,150469..150720,150870..151048)	Theileria annulata	3864030
TA16660	CDS	TA16660	NC_011129.2	151238	156544	R	Tap821d03.p1c.cand.107 - score = 92.14; SMART transmembrane domain at 41-63; 1 probable transmembrane helix predicted for TA16660 by TMHMM2.0 at aa 41-63; uncharacterized protein	complement(join(151238..154260,154324..156339,156439..156544))	Theileria annulata	3864029
TA16655	CDS	TA16655	NC_011129.2	157317	159016	D	Tap821d03.p1c.C.cand.6 - score = 19.79; uncharacterized protein	join(157317..158094,158166..159016)	Theileria annulata	3864028
TA16650	CDS	TA16650	NC_011129.2	159178	160965	D	uncharacterized protein	join(159178..159321,159403..159422,159454..159587,159650..160965)	Theileria annulata	3864027
TA16645	CDS	TA16645	NC_011129.2	161087	163948	R	SMART 2 AAA domains at aa 121-256, E()=5.62e-20; 418-568, E()=5.09e-09; ATPase, putative	complement(join(161087..161362,161378..161595,161657..161729,161859..162075,162092..162203,162264..162316,162349..162605,162700..162858,162995..163113,163186..163431,163519..163948))	Theileria annulata	3864026
TA16640	CDS	TA16640	NC_011129.2	164735	166835	R	Tap821d03.p1c.cand.105 - score = 24.41; SMART pfam:DDHD (PF02862) at aa 190-435, E()=5.20e-09; uncharacterized protein	complement(join(164735..165019,165135..165325,165460..165589,165639..165866,165957..166061,166136..166237,166272..166446,166576..166835))	Theileria annulata	3864025
TA16635	CDS	TA16635	NC_011129.2	167270	168176	D	Tap821d03.p1c.C.cand.8 - score = 12.68; SMART pfam:sodfe (PF00081) at aa 1-93, E()=1.80e-39; pfam:sodfe_C (PF02777) at aa 97-206, E()=1.60e-36; Fe/Mn superoxide dismutase (SOD), putative	join(167270..167390,167492..167533,167594..167903,168020..168176)	Theileria annulata	3864024
TA16625	CDS	TA16625	NC_011129.2	168413	170623	D	Tap821d03.p1c.C.cand.9 - score = 8.72; uncharacterized protein	join(168413..168867,168898..168971,169026..169201,169215..169288,169320..169421,169566..169761,169824..169895,169947..170086,170108..170192,170225..170437,170507..170623)	Theileria annulata	3864022
TA16620	CDS	TA16620	NC_011129.2	171591	173067	R	Tap821d03.p1c.cand.104 - score = 25.13; SMART 2 transmembrane domains at aa 79-96 and 244-266; DnaJ (SM00271) at aa 127-184, E()=2.45e-22; 2 probable transmembrane helices predicted for TA16620 by TMHMM2.0 at aa 79-96 and 244-266; DnaJ-like molecular chaperone, putative	complement(join(171591..172002,172158..172432,172588..172959,172990..173067))	Theileria annulata	3864021
TA16615	CDS	TA16615	NC_011129.2	173442	176419	R	SMART 4 transmembrane domains at aa 416-438, 473-495, 560-582 and 592-614; 5 probable transmembrane helices predicted for TA16615 by TMHMM2.0 at aa 20-39, 416-438, 473-495, 560-582 and 592-614; uncharacterized protein	complement(join(173442..173760,173812..173896,173946..173989,174027..174095,174150..174253,174350..174508,174558..174697,174792..175686,175793..176020,176061..176203,176365..176419))	Theileria annulata	3864020
TA16610	CDS	TA16610	NC_011129.2	176554	178503	D	Tap821d03.p1c.C.cand.11 - score = 15.88; SMART pfam:Peptidase_M18 (PF02127) at aa 21-475, E()=6.60e-115; pfam:Peptidase_M42 (PF05343) at aa 170-470, E()=6.30e-02; aspartyl aminopeptidase, putative	join(176554..176705,176764..176867,176957..177069,177184..177274,177307..177416,177524..177854,177968..178503)	Theileria annulata	3864019
TA16605	CDS	TA16605	NC_011129.2	178672	179787	R	Tap821d03.p1c.cand.101 - score = 30.82; SMART 1 transmembrane domain at aa 324-346; 1 probable transmembrane helix predicted for TA16605 by TMHMM2.0 at aa 324-346; Tpr-related protein family member, putative	complement(178672..179787)	Theileria annulata	3864018
TA16600	CDS	TA16600	NC_011129.2	180077	180982	D	Tap821d03.p1c.C.cand.12 - score = 19.17; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA16600 by TMHMM2.0 at aa 5-27; Tpr-related protein family member, putative	180077..180982	Theileria annulata	3864017
TA16595	CDS	TA16595	NC_011129.2	180933	185296	R	Tap821d03.p1c.cand.100 - score = 179.37; SMART 4 pfam:DUF529 (PF04385) at aa 171-317, E()=2.20e-38; 363-501, E()=2.30e-76; 566-704, E()=2.40e-75; 789-929, E()=2.40e-51; SfiI-subtelomeric fragment related protein family member, putative	complement(join(180933..181259,181284..182420,182507..185296))	Theileria annulata	3864016
TA16590	CDS	TA16590	NC_011129.2	185409	190809	R	SMART pfam:Syja_N (PF02383) at aa 75-426, E()=3.00e-15; IPPc (SM00128) at aa 1.59e-22; inositol phosphatase, putative	complement(join(185409..186861,187030..187116,187212..187539,187692..187769,187842..188045,188207..189637,189816..190809))	Theileria annulata	3864268
TA16585	CDS	TA16585	NC_011129.2	191515	193901	D	Tap821d03.p1c.C.cand.14 - score = 21.44; SMART DEXDc (SM00487) at aa 87-346, E()=1.55e-03; pfam:helicase_C (PF00271) at aa 415-485, E()=1.80e-02; DEAD-box family helicase, putative	join(191515..192283,192379..192841,192934..193181,193269..193428,193588..193659,193760..193901)	Theileria annulata	3864267
TA16580	CDS	TA16580	NC_011129.2	196343	197059	R	Tap821d03.p1c.cand.99 - score = 21.06; Signal peptide predicted for TA16580 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.579 between residues 17 and 18; uncharacterized protein	complement(196343..197059)	Theileria annulata	3864266
TA16565	CDS	TA16565	NC_011129.2	197514	198215	R	Tap821d03.p1c.cand.98 - score = 18.91; Signal peptide predicted for TA16565 by SignalP 2.0 HMM (Signal peptide probability 0.884, signal anchor probability 0.000) with cleavage site probability 0.376 between residues 17 and 18; GPI-Anchor Signal predicted for TA16565 by DGPI v2.04 with cleavage site probability 0.152 near 202; uncharacterized protein	complement(197514..198215)	Theileria annulata	3864263
TA16560	CDS	TA16560	NC_011129.2	198592	199882	R	Tap821d03.p1c.cand.97 - score = 17.77; SMART IPPc (SM0128) at aa 22-376, E()=2.99e-07; inositol phosphatase, putative	complement(join(198592..198957,199073..199882))	Theileria annulata	3864262
TA16555	CDS	TA16555	NC_011129.2	200602	202172	D	Tap821d03.p1c.C.cand.15 - score = 24.65; SMART 1 transmembrane domain at aa 368-390; 1 probable transmembrane helix predicted for TA16555 by TMHMM2.0 at aa 368-390; uncharacterized protein	join(200602..201353,201389..201508,201588..201704,201812..201931,201962..202172)	Theileria annulata	3864261
TA16550	CDS	TA16550	NC_011129.2	202420	203847	D	Tap821d03.p1c.C.cand.16 - score = 17.31; SMART 10 transmembrane domains at aa 12-31, 51-73, 93-115, 125-147, 189-211, 231-253, 266-284, 314-336, 356-378 and 388-410; 10 probable transmembrane helices predicted for TA16550 by TMHMM2.0 at aa 12-31, 51-73, 93-115, 125-147, 189-211, 231-253, 266-284, 314-336, 356-378 and 388-410; Tpr-related protein family member, putative	202420..203847	Theileria annulata	3864260
TA16545	CDS	TA16545	NC_011129.2	203864	204154	R	Tap821d03.p1c.cand.96 - score = 10.41; SMART pfam:Acylphosphatase (PF00708) at aa 3-91, E()=1.20e-16; acylphosphatase, putative	complement(203864..204154)	Theileria annulata	3864259
TA16540	CDS	TA16540	NC_011129.2	205426	205932	D	Tap821d03.p1c.C.cand.17 - score = 12.59; SMART PTPc_DSPc (SM00012) at aa 10-155, E()=1.09e-01; protein tyrosine phosphatase, putative	205426..205932	Theileria annulata	3864258
TA16535	CDS	TA16535	NC_011129.2	207047	209146	D	Tap821d03.p1c.C.cand.18 - score = 44.72; uncharacterized protein	join(207047..207458,207582..208325,208530..209146)	Theileria annulata	3864257
TA16530	CDS	TA16530	NC_011129.2	210788	211981	D	Tap821d03.p1c.C.cand.19 - score = 31.28; SMART UBQ (SM00213) at aa 3-74, E()=5.71e-23; 2 STI1 (SM00727) domains at aa 137-167, E()=2.37e+00; 171- 206, E()=3.71e+00; UBA (SM00165) at aa 278-316, E()=1.34e- 06; ubiquitin-related chaperonin, putative	join(210788..210932,210962..211123,211153..211218,211271..211431,211526..211691,211722..211981)	Theileria annulata	3864256
TA16525	CDS	TA16525	NC_011129.2	212155	213273	R	Tap821d03.p1c.cand.94 - score = 10.73; SMART 3 transmembrane domains at aa 19-36, 51-73 and 164-182; pfam:DUF250 (PF03151) at aa 204-372, E()=1.90e-02; pfam:DUF6 (PF00892) at aa 230-360, E()=2.20e- 06; 9 probable transmembrane helices predicted for TA16525 by TMHMM2.0 at aa 19-36, 51-73, 164-182, 187-206, 219-238, 253-275, 287-309, 314-336 and 343-361; Signal anchor predicted for TA16525 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.995) with cleavage site probability 0.003 between residues 33 and 34; uncharacterized protein	complement(212155..213273)	Theileria annulata	3864255
TA16520	CDS	TA16520	NC_011129.2	213623	214768	D	Tap821d03.p1c.C.cand.21 - score = 23.26; SMART pfam:UFD1 (PF03152) at aa 156-318, E()=7.40e-07; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA16520 by SignalP 2.0 HMM (Signal peptide probability 0.772, signal anchor probability 0.032) with cleavage site probability 0.595 between residues 29 and 30; ubiquitin-fusion degradation pathway component, UFD1	join(213623..213829,213925..214300,214330..214432,214489..214768)	Theileria annulata	3864254
TA16515	CDS	TA16515	NC_011129.2	215248	217821	D	Tap821d03.p1c.C.cand.22 - score = 45.64; uncharacterized protein	215248..217821	Theileria annulata	3864253
TA16510	CDS	TA16510	NC_011129.2	217858	219021	D	Tap821d03.p1c.C.cand.23 - score = 17.54; SMART pfam:OMPdecase (PF00215) at aa 60-282, E()7.60e-10; orotidine 5'-phosphate decarboxylase, putative	join(217858..218151,218297..218621,218687..218836,218873..219021)	Theileria annulata	3864252
TA16505	CDS	TA16505	NC_011129.2	219025	224413	R	Tap821d03.p1c.cand.93 - score = 158.47; SMART DEXDc (SM00487) at aa 787-979, E()=2.88e-36; HELICc (SM00490) at aa 1436-1519, E()=1.10e-23; DEAD-box family helicase, putative	complement(join(219025..219276,219306..219494,219524..219716,219778..219947,219991..221519,221572..224413))	Theileria annulata	3864251
TA16500	CDS	TA16500	NC_011129.2	224457	227303	R	Tap821d03.p1c.cand.92 - score = 56.58; phosphatidylglycerophosphate synthase, putative	complement(join(224457..224852,224902..224972,225004..225078,225116..225331,225461..227303))	Theileria annulata	3864250
TA16495	CDS	TA16495	NC_011129.2	228010	230013	D	Tap821d03.p1c.C.cand.24 - score = 9.92; uncharacterized protein	join(228010..228543,228693..229535,229602..229685,229732..229851,229888..230013)	Theileria annulata	3864249
TA16490	CDS	TA16490	NC_011129.2	230052	230902	D	Tap821d03.p1c.C.cand.25 - score = 52.25; SMART pfam:Ribosomal_L23 (PF00276) at aa 17-111, E()=1.80e-07; ribosomal protein L23 (or L25), putative	join(230052..230095,230124..230572,230605..230750,230783..230902)	Theileria annulata	3864072
TA16485	CDS	TA16485	NC_011129.2	231843	233504	D	Tap821d03.p1c.C.cand.26 - score = 46.59; uncharacterized protein	231843..233504	Theileria annulata	3864071
TA16480	CDS	TA16480	NC_011129.2	233688	234065	R	Tap821d03.p1c.cand.91 - score = 12.07; uncharacterized protein	complement(join(233688..233764,233791..233836,233866..233924,233954..234065))	Theileria annulata	3864070
TA16475	CDS	TA16475	NC_011129.2	234726	237872	D	Tap821d03.p1c.C.cand.27 - score = 76.72; SMART HATPase_c (SM00387) at aa 131-315, E()=5.52e-16; TOP2c (SM00433) at aa 135-913, E()=1.17e-142; DNA topoisomerase II, putative	join(234726..235880,235950..236053,236110..236257,236310..236388,236463..236563,236601..236760,236817..237010,237045..237872)	Theileria annulata	3864069
TA16470	CDS	TA16470	NC_011129.2	237934	239253	R	Tap821d03.p1c.cand.90 - score = 31.41; uncharacterized protein	complement(join(237934..238184,238231..238332,238362..238533,238564..238665,238694..238755,238785..239253))	Theileria annulata	3864068
TA16460	CDS	TA16460	NC_011129.2	239830	242376	D	Tap821d03.p1c.C.cand.28 - score = 78.41; SMART 1 transmembrane domain at aa 159-181; AAA (SM00382) at aa 263-403, E()=5.27e-25; pam:Peptidase_M41 (PF01434) at aa 461-666, E()=3.80e-73; 1 probable transmembrane helix predicted for TA16460 by TMHMM2.0 at aa 159-181; metalloprotease/cell division cycle protein (FtsH)	join(239830..240532,240576..240731,240764..241273,241328..242376)	Theileria annulata	3864066
TA16455	CDS	TA16455	NC_011129.2	242436	245225	R	Tap821d03.p1c.cand.88 - score = 56.83; SMART pfam:Vsp16_N (PF04841) at aa 1-480, E()=1.70e-02; pfam:Vsp16_C (PF04840) at aa 616-925, E()=7.20e-05; vacuolar sorting protein (Vps16)	complement(242436..245225)	Theileria annulata	3864065
TA16450	CDS	TA16450	NC_011129.2	245555	247088	R	Tap821d03.p1c.cand.87 - score = 33.65; SMART 7 WD40 (SM00320) domains, at aa 68-111, E()=1.10e+01; 116-155, E()=2.57e+00; 159-198, E()=2.30e+00; 205-243, E()=3.64e-02; 246-285, E()=2.93e- 06; 313-352, E()=7.64e+01; 360-399, E()=8.04e-04; uncharacterized protein	complement(join(245555..246402,246457..246586,246617..246718,246819..247088))	Theileria annulata	3864064
TA16445	CDS	TA16445	NC_011129.2	247130	248286	R	Tap821d03.p1c.cand.86 - score = 28.37; SMART pfam:Ribosomal_L1 (PF00687) at aa 128-346, E()=1.80e-10; chloroplast ribosomal protein L1 or 50S ribosomal protein L10, putative	complement(join(247130..247253,247297..247633,247668..248286))	Theileria annulata	3864063
TA16440	CDS	TA16440	NC_011129.2	250106	252058	D	Tap821d03.p1c.C.cand.29 - score = 55.09; uncharacterized protein	250106..252058	Theileria annulata	3864062
TA16435	CDS	TA16435	NC_011129.2	252654	253728	D	Tap821d03.p1c.C.cand.30 - score = 26.33; uncharacterized protein	join(252654..252725,252757..253728)	Theileria annulata	3864061
TA16430	CDS	TA16430	NC_011129.2	254026	254542	D	Tap821d03.p1c.C.cand.31 - score = 15.93; uncharacterized protein	join(254026..254286,254319..254383,254416..254542)	Theileria annulata	3864060
TA16425	CDS	TA16425	NC_011129.2	254738	255660	R	Tap821d03.p1c.cand.84 - score = 19.49; uncharacterized protein	complement(join(254738..254806,254836..254864,254952..255660))	Theileria annulata	3864059
TA16420	CDS	TA16420	NC_011129.2	255936	257295	D	Tap821d03.p1c.C.cand.32 - score = 18.69; Signal peptide predicted for TA16420 by SignalP 2.0 HMM (Signal peptide probability 0.671, signal anchor probability 0.000) with cleavage site probability 0.640 between residues 17 and 18; uncharacterized protein	join(255936..256532,256587..256839,256940..257295)	Theileria annulata	3864058
TA16415	CDS	TA16415	NC_011129.2	257355	259346	R	Tap821d03.p1c.cand.83 - score = 57.77; SMART pfam:DUF408 (PF04181) at aa 158-339, E()=6.20e-03; uncharacterized protein	complement(join(257355..257675,257709..257819,257870..258638,258670..259346))	Theileria annulata	3864057
TA16400	CDS	TA16400	NC_011129.2	259531	261246	R	Tap821d03.p1c.cand.82 - score = 47.24; SMART pfam:cpn60_TCP1 (PF00118) at aa 36-537, E()=3.20e-139; chaperonin (T-complex protein 1 (TCP1), theta subunit)	complement(join(259531..260762,260823..261246))	Theileria annulata	3864054
TA16395	CDS	TA16395	NC_011129.2	261754	262941	D	Tap821d03.p1c.C.cand.33 - score = 13.64; uncharacterized protein	261754..262941	Theileria annulata	3863409
TA16390	CDS	TA16390	NC_011129.2	263040	264069	R	Tap821d03.p1c.cand.81 - score = 22.41; uncharacterized protein	complement(join(263040..263112,263143..263934,264023..264069))	Theileria annulata	3863408
TA16385	CDS	TA16385	NC_011129.2	264399	266837	D	Tap821d03.p1c.C.cand.34 - score = 61.36; uncharacterized protein	264399..266837	Theileria annulata	3863407
TA16380	CDS	TA16380	NC_011129.2	266913	267855	R	Tap821d03.p1c.cand.80 - score = 22.18; SMART RING (SM00184) at aa 237-275, E()=8.56e-06; uncharacterized protein	complement(join(266913..267572,267605..267715,267757..267855))	Theileria annulata	3863406
TA16375	CDS	TA16375	NC_011129.2	268258	270384	R	Tap821d03.p1c.cand.79 - score = 58.28; uncharacterized protein	complement(join(268258..270014,270138..270192,270283..270384))	Theileria annulata	3863405
TA16370	CDS	TA16370	NC_011129.2	270921	273932	R	Tap821d03.p1c.cand.78 - score = 46.08; SMART 9 transmembrane domains at aa 95-117, 159-181, 248-270, 285-307, 442-464, 507-529, 575-597, 612-634 and 737-759; 9 probable transmembrane helices predicted for TA16370 by TMHMM2.0 at aa 95-117, 159-181, 248-270, 285-307, 442-464, 507-529, 575-597, 612-634 and 737-759; uncharacterized protein	complement(270921..273932)	Theileria annulata	3863404
TA16365	CDS	TA16365	NC_011129.2	274186	275731	R	Tap821d03.p1c.cand.77 - score = 102.13; SMART 2 pfam:RCC1 (PF00415) domains at aa 111-173, E()=2.20e-02; and aa 176-226, E()=4.40e-05; uncharacterized protein	complement(join(274186..274976,275034..275508,275576..275731))	Theileria annulata	3863403
TA16360	CDS	TA16360	NC_011129.2	275835	279220	R	Tap821d03.p1c.cand.77 - score = 102.13; SMART pfam:Myosin_N (PF02736) at aa 38-81, E()=1.10e-03; MYSc (SM00242) at aa 84-802, E()=2.64e-186; 4 IQ (SM00015) domains, at aa 875-897, E()=6.16e-02; 940-962, E()=3.35e-03; 969-991, E()=3.68e+00; 995-1017, E()=8.00e-01; myosin, putative	complement(join(275835..276017,276097..278462,278520..278805,278861..279220))	Theileria annulata	3863402
TA16355	CDS	TA16355	NC_011129.2	280143	281181	D	Tap821d03.p1c.C.cand.35 - score = 22.72; uncharacterized protein	join(280143..280368,280403..281181)	Theileria annulata	3863401
TA16345	CDS	TA16345	NC_011129.2	282009	283472	D	Tap821d03.p1c.C.cand.36 - score = 35.90; SMART STYKc (SM00221) at aa 263-485, E()=1.98e+00; uncharacterized protein	282009..283472	Theileria annulata	3863399
TA16340	CDS	TA16340	NC_011129.2	283640	285211	D	Tap821d03.p1c.C.cand.37 - score = 41.33; SMART ArfGap (SM00105) at aa 21-141, E()=1.03e-21; ADP-ribosylation factor (ARF) GTP-ase activating protein, putative	283640..285211	Theileria annulata	3863398
TA16335	CDS	TA16335	NC_011129.2	285263	285941	R	Tap821d03.p1c.cand.76 - score = 17.95; SMART pfam:pro_isomerase (PF00160) at aa 27-205, E()=1.10e-60; cyclophilin, putative	complement(join(285263..285762,285824..285941))	Theileria annulata	3863397
TA16330	CDS	TA16330	NC_011129.2	286040	287826	R	Tap821d03.p1c.cand.75 - score = 78.60; SMART 2 pfam:PseudoU_synth1 (PF01416) domains at aa 73-226, E()=5.10e-09 and at 302-408, 3.70e-07; tRNA pseudouridine synthase, putative	complement(join(286040..286121,286216..286358,286426..286966,287021..287464,287600..287826))	Theileria annulata	3863396
TA16325	CDS	TA16325	NC_011129.2	288078	289141	R	Tap821d03.p1c.cand.75 - score = 78.60; SMART pfam:ATP-bind (PF03029) at aa 1-242, E()=8.10e-66; uncharacterized protein	complement(join(288078..288164,288234..288285,288339..288518,288550..288928,288959..288989,289046..289141))	Theileria annulata	3863395
TA16320	CDS	TA16320	NC_011129.2	289342	290677	R	Tap821d03.p1c.cand.75 - score = 78.60; SMART 3 pfam:mito_carr (PF00153) domains at aa 26-116, E()=1.30e-24; 125-217, E()=7.50e-05; 228-31, E()=2.40e-05; mitochondrial phosphate carrier protein, putative	complement(join(289342..289435,289486..289592,289693..289904,289937..290096,290132..290677))	Theileria annulata	3863394
TA16315	CDS	TA16315	NC_011129.2	290834	291819	R	Tap821d03.p1c.cand.74 - score = 33.27; SMART pfam:pro_isomerase (PF00160) at aa 8-202, E()=4.30e-21; cyclophilin, putative	complement(join(290834..290938,290973..291051,291084..291187,291220..291569,291626..291680,291742..291819))	Theileria annulata	3863393
TA16310	CDS	TA16310	NC_011129.2	292131	295428	R	SMART KISc (SM00129) at aa 371-699, E()=4.95e-92; kinesin, putative	complement(join(292131..292226,292279..292561,292595..292629,292683..292763,292831..292978,293100..293236,293308..295428))	Theileria annulata	3863392
TA16305	CDS	TA16305	NC_011129.2	296018	296805	D	Tap821d03.p1c.C.cand.38 - score = 29.86; SMART pfam:EF1BD (PF00736) at aa 127-240, E()=2.50e-15; translation elongation factor E1-F beta, putative	join(296018..296309,296375..296805)	Theileria annulata	3863391
TA16300	CDS	TA16300	NC_011129.2	296878	298722	R	Tap821d03.p1c.cand.72 - score = 33.72; uncharacterized protein	complement(join(296878..297043,297093..297198,297239..298168,298252..298425,298491..298722))	Theileria annulata	3863390
TA16295	CDS	TA16295	NC_011129.2	299020	300756	D	Tap821d03.p1c.C.cand.39 - score = 59.28; SMART aminotran_5 (PF00266) at aa 74-445, E()=1.30e-08; cysteine desulfurase, putative	join(299020..299259,299299..299379,299464..299579,299620..299962,299991..300134,300192..300320,300351..300531,300611..300756)	Theileria annulata	3863606
TA16290	CDS	TA16290	NC_011129.2	300813	302373	D	Tap821d03.p1c.C.cand.39 - score = 59.28; uncharacterized protein	join(300813..301140,301208..301334,301399..301455,301487..301705,301768..301860,301893..302223,302242..302373)	Theileria annulata	3863605
TA16285	CDS	TA16285	NC_011129.2	302569	303957	D	Tap821d03.p1c.C.cand.40 - score = 15.85; SMART 10 transmembrane domains at aa 21-40, 111-133, 145-167, 172-194, 207-229, 259-281, 294-312, 335-357, 378-400and 410-432; 10 probable transmembrane helices predicted for TA16285 by TMHMM2.0 at aa 21-40, 111-133, 145-167, 172-194, 207-229, 259-281, 294-312, 335-357, 378-400 and 410-432; Tpr-related protein family member, putative	302569..303957	Theileria annulata	3863604
TA16280	CDS	TA16280	NC_011129.2	304080	306779	D	Tap821d03.p1c.C.cand.41 - score = 51.80; SMART 11 transmembrane domains at aa 20-39, 504-526, 533-555, 560-582, 595-617, 653-675, 688-706, 739-761, 782-804, 814-836, 871-893; 11 probable transmembrane helices predicted for TA16280 by TMHMM2.0 at aa 20-39, 504-526, 533-555, 560-582, 595-617, 653-675, 688-706, 739-761, 782-804, 814-836 and 871-893; Tpr-related protein family member, putative	304080..306779	Theileria annulata	3863603
TA16275	CDS	TA16275	NC_011129.2	306854	308196	R	Tap821d03.p1c.cand.71 - score = 31.15; SMART 5 WD40 (SM00320) domains at aa 1-38, E()=1.07e+00; 41-80, E()=2.44e-03; 144-183, E()=1.98e+01; 200-239, E()=9.52e-06; 304-343, E()=1.55e-05; eukaryotic translation initiation factor 3 (eIF3), subunit, putative	complement(join(306854..307177,307207..307263,307304..307405,307436..307727,307780..307933,307963..308008,308107..308196))	Theileria annulata	3863602
TA16270	CDS	TA16270	NC_011129.2	308456	310156	R	Tap821d03.p1c.cand.70 - score = 58.73; Signal peptide predicted for TA16270 by SignalP 2.0 HMM (Signal peptide probability 0.910, signal anchor probability 0.000) with cleavage site probability 0.630 between residues 25 and 26; uncharacterized protein	complement(308456..310156)	Theileria annulata	3863601
TA16265	CDS	TA16265	NC_011129.2	310543	311744	R	Tap821d03.p1c.cand.69 - score = 28.31; SMART pfam:PDCD2_C (PF04194) at aa 171-361, E()=3.30e-09; apoptosis regulatory protein (programmed cell death protein 2 (PCDC2))	complement(join(310543..311012,311067..311243,311273..311744))	Theileria annulata	3863600
TA16260	CDS	TA16260	NC_011129.2	312127	312861	D	Tap821d03.p1c.C.cand.42 - score = 23.55; uncharacterized protein	join(312127..312190,312272..312861)	Theileria annulata	3863599
TA16255	CDS	TA16255	NC_011129.2	312882	317095	R	Tap821d03.p1c.cand.68 - score = 90.31; SMART pfam:GTP_EFTU (PF00009) at aa 12-333, E()=9.00e-61; pfam:EFG_C (PF00679) at aa 1081-1170, E()=6.00e-17; elongation factor 2, putative	complement(join(312882..312950,312982..313068,313201..313457,313493..313577,313627..314002,314059..314506,314541..314861,314923..315031,315096..315203,315235..315417,315458..317095))	Theileria annulata	3863598
TA16250	CDS	TA16250	NC_011129.2	317286	318007	R	Tap821d03.p1c.cand.67 - score = 16.82; Signal peptide predicted for TA16250 by SignalP 2.0 HMM (Signal peptide probability 0.673, signal anchor probability 0.178) with cleavage site probability 0.328 between residues 30 and 31; uncharacterized protein	complement(join(317286..317461,317505..317794,317847..318007))	Theileria annulata	3863597
TA16235	CDS	TA16235	NC_011129.2	318681	319616	D	Tap821d03.p1c.C.cand.43 - score = 29.31; SMART pfam:NAP (PF00956) at aa 30-219, E()=1.80e-09; nucleosome assembly protein (NAP), putative	join(318681..318733,318800..318852,318883..318986,319018..319176,319246..319365,319395..319616)	Theileria annulata	3863594
TA16230	CDS	TA16230	NC_011129.2	319687	322212	R	Tap821d03.p1c.cand.66 - score = 44.32; uncharacterized protein	complement(319687..322212)	Theileria annulata	3863593
TA16225	CDS	TA16225	NC_011129.2	322379	323232	R	Tap821d03.p1c.cand.65 - score = 25.08; SMART pfam:Hydrolase (PF00702) at aa 10-243, E()=4.50e-03; haloacid dehalogenase-like family hydrolase, putative	complement(join(322379..323049,323082..323232))	Theileria annulata	3863592
TA16220	CDS	TA16220	NC_011129.2	323701	324692	R	Tap821d03.p1c.cand.64 - score = 23.63; 1 probable transmembrane helix predicted for TA16220 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA16220 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.008) with cleavage site probability 0.977 between residues 26 and 27; uncharacterized protein	complement(join(323701..324428,324455..324692))	Theileria annulata	3863591
TA16215	CDS	TA16215	NC_011129.2	325090	326097	R	Tap821d03.p1c.cand.63 - score = 19.62; SMART pfam:Hydrolase (PF00702) at aa 33-267, E()=1.20e-02; Signal peptide predicted for TA16215 by SignalP 2.0 HMM (Signal peptide probability 0.985, signal anchor probability 0.000) with cleavage site probability 0.934 between residues 20 and 21; haloacid dehalogenase-like family hydrolase, putative	complement(join(325090..325763,325878..326097))	Theileria annulata	3863590
TA16210	CDS	TA16210	NC_011129.2	326392	327783	D	SMART 1 transmembrane domain at aa 91-113; 1 probable transmembrane helix predicted for TA16210 by TMHMM2.0 at aa 91-113; GPI-Anchor Signal predicted for TA16210 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	join(326392..326451,326493..326721,326757..327273,327309..327662,327693..327783)	Theileria annulata	3863589
TA16205	CDS	TA16205	NC_011129.2	327906	328385	D	Tap821d03.p1c.C.cand.44 - score = 22.81; Signal peptide predicted for TA16205 by SignalP 2.0 HMM (Signal peptide probability 0.779, signal anchor probability 0.000) with cleavage site probability 0.427 between residues 21 and 22; uncharacterized protein	327906..328385	Theileria annulata	3863588
TA16200	CDS	TA16200	NC_011129.2	328472	329415	R	Signal peptide predicted for TA16200 by SignalP 2.0 HMM (Signal peptide probability 0.812, signal anchor probability 0.000) with cleavage site probability 0.526 between residues 17 and 18; haloacid dehalogenase-like family hydrolase, putative	complement(join(328472..329193,329226..329415))	Theileria annulata	3864150
TA16195	CDS	TA16195	NC_011129.2	329799	330712	R	Tap821d03.p1c.cand.61 - score = 23.28; SMART pfam:Hydrolase (PF00702) at aa 29-263, E()=4.00e-02; Signal peptide predicted for TA16195 by SignalP 2.0 HMM (Signal peptide probability 0.979, signal anchor probability 0.005) with cleavage site probability 0.746 between residues 16 and 17; haloacid dehalogenase-like family hydrolase, putative	complement(join(329799..330472,330505..330712))	Theileria annulata	3864149
TA16190	CDS	TA16190	NC_011129.2	330967	331877	R	Tap821d03.p1c.cand.60 - score = 24.07; Signal peptide predicted for TA16190 by SignalP 2.0 HMM (Signal peptide probability 0.979, signal anchor probability 0.005) with cleavage site probability 0.746 between residues 16 and 17; haloacid dehalogenase-like family hydrolase, putative	complement(join(330967..331637,331670..331877))	Theileria annulata	3864148
TA16185	CDS	TA16185	NC_011129.2	332132	333027	R	SMART pfam:Hydrolase (PF00702) at aa 14-249, E()=1.60e-02; haloacid dehalogenase-like family hydrolase, putative	complement(join(332132..332805,332865..333027))	Theileria annulata	3864147
TA16180	CDS	TA16180	NC_011129.2	333634	335273	R	Tap821d03.p1c.cand.58 - score = 48.05; SMART S_TKc (SM00220) at aa 50-307, E()=8.70e-106; 4 EFh (SM00054) domains at aa 357-385, E()=4.06e-02; 404-432, E()=4.74e-03; 440-468, E()=4.60e-01; 474-502, E()=1.53e-06; calmodulin-like domain protein kinase, putative	complement(join(333634..333878,333910..334018,334049..334309,334341..334507,334541..335273))	Theileria annulata	3864146
TA16175	CDS	TA16175	NC_011129.2	335659	337136	R	Tap821d03.p1c.cand.57 - score = 82.19; SMART pfam:TGT (PF01702) at aa 128-368, E()=1.50e-102; queuine tRNA-ribosyltransferase, putative	complement(join(335659..335759,335793..335934,335963..336038,336066..336271,336300..336495,336532..336632,336662..336786,336818..336953,336996..337136))	Theileria annulata	3864145
TA16170	CDS	TA16170	NC_011129.2	337279	338534	R	SMART TFIIE (SM00531) at aa 45-204, E()=1.49e-03; transcription factor TFIIE, putative	complement(join(337279..337893,337924..338176,338206..338534))	Theileria annulata	3864144
TA16165	CDS	TA16165	NC_011129.2	339163	339558	D	Tap821d03.p1c.C.cand.45 - score = 7.87; SMART UBQ (SM00213) at aa 1-72, E()=4.28e-36; ZnF_NFX (SM0043) at aa 110-120, E()=0.00e+00; pfam:Ribosomal_L40e (PF01020) at aa 77-128, E()=3.20e-29; ubiquitin/60S ribosomal fusion protein, putative	339163..339558	Theileria annulata	3864143
TA16160	CDS	TA16160	NC_011129.2	340651	342075	D	Tap821d03.p1c.C.cand.46 - score = 29.09; SMART pfam:sugar_tr (PF00081) at aa 12-473, E()=2.80e-34; 12 probable transmembrane helices predicted for TA16160 by TMHMM2.0 at aa 7-29, 58-80, 92-114, 118-140, 147-169, 189-211, 279-301, 316-338, 345-363, 378-400, 413-435 and 440-462; Signal peptide predicted for TA16160 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.018) with cleavage site probability 0.293 between residues 24 and 25; hexose transporter, putative	340651..342075	Theileria annulata	3864142
TA16155	CDS	TA16155	NC_011129.2	342194	343555	D	Tap821d03.p1c.C.cand.47 - score = 17.70; SMART HATPase_c (SM00387) at aa 18-133, E()=1.02e-01; uncharacterized protein	join(342194..342224,342254..342512,342646..342778,342834..342911,342944..343227,343351..343555)	Theileria annulata	3864141
TA16150	CDS	TA16150	NC_011129.2	344123	345118	R	SMART 5 transmembrane domains at aa 63-82, 103-125, 140-170, 226-245 and 260-282; 5 probable transmembrane helices predicted for TA16150 by TMHMM2.0 at aa 63-82, 103-125, 140-170, 226-245 and 260-282; uncharacterized protein	complement(join(344123..344235,344265..344603,344636..344768,344801..345006,345037..345118))	Theileria annulata	3864140
TA16145	CDS	TA16145	NC_011129.2	345973	347199	R	Tap821d03.p1c.cand.53 - score = 24.75; SMART pfam:DnaJ (PF00226) at aa 58-126, E()=4.00e-03; 5 transmembrane domains at aa 5-27, 138-160 173-195, 210-232 and 333-355; 5 probable transmembrane helices predicted for TA16145 by TMHMM2.0 at aa 5-27, 138-160, 173-195, 210-232 and 333-355; Signal peptide predicted for TA16145 by SignalP 2.0 HMM (Signal peptide probability 0.636, signal anchor probability 0.002) with cleavage site probability 0.267 between residues 16 and 17; GPI-Anchor Signal predicted for TA16145 by DGPI v2.04, no cleavage site predicted; DnaJ-like molecular chaperone, putative	complement(join(345973..346250,346282..346441,346472..346591,346621..346742,346772..347056,347094..347199))	Theileria annulata	3864139
TA16140	CDS	TA16140	NC_011129.2	347517	349695	D	Tap821d03.p1c.C.cand.48 - score = 58.70; uncharacterized protein	join(347517..348347,348382..348947,348977..349113,349142..349269,349299..349469,349501..349695)	Theileria annulata	3864138
TA17100	CDS	TA17100	NC_011129.2	349697	350907	R	Tap821d03.p1c.cand.52 - score = 23.99; uncharacterized protein	complement(join(349697..350701,350743..350907))	Theileria annulata	3864311
TA17095	CDS	TA17095	NC_011129.2	351276	353545	D	Tap821d03.p1c.C.cand.49 - score = 44.21; SMART SANT (SM00717) at aa 209-263, E()=2.74e-02; ZnF_NFX (SM00438) at aa 476-496, E()=0.00e+00; 1 transmembrane domain at aa 600-622; 1 probable transmembrane helix predicted for TA17095 by TMHMM2.0 at aa 600-622; uncharacterized protein	join(351276..351934,351967..352111,352143..352261,352293..352485,352516..352591,352632..352719,352752..352905,352938..353099,353132..353217,353241..353291,353362..353545)	Theileria annulata	3864310
TA17090	CDS	TA17090	NC_011129.2	353728	359136	D	Tap821d03.p1c.C.cand.50 - score = 128.10; SMART pfam:Noti (PF04054) at aa 1377-1760, E()=1.00e-06; uncharacterized protein	join(353728..356338,356406..358706,358754..359136)	Theileria annulata	3864309
TA17085	CDS	TA17085	NC_011129.2	359237	360469	D	Tap821d03.p1c.C.cand.51 - score = 60.96; SMART WW (SM00456) at aa 13-45, E()=8.47e-07; pfam:FF (PF01846) at aa 64-112, E()=3.60e-05; uncharacterized protein	join(359237..359289,359320..359377,359423..359569,359599..360108,360137..360232,360259..360374,360403..360469)	Theileria annulata	3864308
TA17080	CDS	TA17080	NC_011129.2	360639	361932	D	Tap821d03.p1c.C.cand.51 - score = 60.96; replication factor C subunit, putative	join(360639..360839,360875..360947,360985..361098,361137..361255,361288..361350,361383..361621,361652..361721,361756..361932)	Theileria annulata	3864444
TA17075	CDS	TA17075	NC_011129.2	362289	363819	R	Tap821d03.p1c.cand.49 - score = 44.54; uncharacterized protein	complement(join(362289..362921,362952..363120,363150..363217,363246..363360,363391..363641,363670..363819))	Theileria annulata	3864443
TA17070	CDS	TA17070	NC_011129.2	363932	365601	D	Tap821d03.p1c.C.cand.52 - score = 117.86; uncharacterized protein	join(363932..364084,364125..364250,364285..364578,364610..364781,364812..364900,364932..365054,365092..365184,365214..365363,365393..365446,365503..365601)	Theileria annulata	3864442
TA17065	CDS	TA17065	NC_011129.2	365735	368221	D	SMART 2 SANT (SM00717) at aa 6-55, E()=1.62e-13; 58-105, E()=3.32e-10; Myb-like DNA binding protein (CDC5)	join(365735..365880,365926..366112,366148..366521,366553..366745,366778..366921,366953..367039,367073..367185,367247..367676,367707..367783,367818..368035,368067..368221)	Theileria annulata	3864441
TA17060	CDS	TA17060	NC_011129.2	368770	370403	D	Tap821d03.p1c.C.cand.53 - score = 45.89; ms1orf2 protein, putative	join(368770..368881,368925..369036,369068..370403)	Theileria annulata	3864440
TA17055	CDS	TA17055	NC_011129.2	370622	371227	D	Tap821d03.p1c.C.cand.54 - score = 13.99; Signal peptide predicted for TA17055 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.001) with cleavage site probability 0.417 between residues 16 and 17; uncharacterized protein	370622..371227	Theileria annulata	3864439
TA17050	CDS	TA17050	NC_011129.2	371415	372260	R	Tap821d03.p1c.cand.48 - score = 27.39; SMART pfam:EMA (PF02408) at aa 1-280, E()=1.40e-191; 1 probable transmembrane helix predicted for TA17050 by TMHMM2.0 at aa 261-280; Signal peptide predicted for TA17050 by SignalP 2.0 HMM (Signal peptide probability 0.995, signal anchor probability 0.002) with cleavage site probability 0.953 between residues 22 and 23; GPI-Anchor Signal predicted for TA17050 by DGPI v2.04 with cleavage site probability 1.1019999 near 247; merozoite-piroplasm surface antigen Tams1	complement(371415..372260)	Theileria annulata	3864438
TA17045	CDS	TA17045	NC_011129.2	372803	374354	D	Tap821d03.p1c.C.cand.55 - score = 31.14; uncharacterized protein	join(372803..372949,373016..373087,373169..373333,373379..373442,373472..373698,373730..374214,374249..374354)	Theileria annulata	3864437
TA17040	CDS	TA17040	NC_011129.2	374921	377220	R	Tap821d03.p1c.cand.46 - score = 31.98; SMART ZnF_NFX (SM00438) at aa 144-163, E()=0.00e+00; uncharacterized protein	complement(join(374921..375512,375563..375782,375815..376834,376869..377220))	Theileria annulata	3864436
TA17035	CDS	TA17035	NC_011129.2	377564	380088	R	Tap821d03.p1c.cand.45 - score = 65.46; SMART pfam:GST_C (PF00043) at aa 56-172, E()=1.90e-03; pfam:tRNA-synt_1c (PF00749) at aa 214-520, E()=4.20e-131; pfam:tRNA-synt-1c_C (PF03950) at aa 522-696, E()=1.90e-35; glutamyl-tRNA synthetase, putative	complement(join(377564..377614,377648..377733,377825..377990,378054..378896,378939..379063,379095..379487,379540..379616,379649..380088))	Theileria annulata	3864435
TA17030	CDS	TA17030	NC_011129.2	380992	381936	D	Tap821d03.p1c.C.cand.56 - score = 21.14; SMART pfam:RNase_PH (PF01138) at aa 15-135, E()=1.40e-06; 3' exonuclease, exosome component, putative	join(380992..381049,381130..381506,381540..381596,381633..381758,381790..381936)	Theileria annulata	3864434
TA17025	CDS	TA17025	NC_011129.2	382462	383378	D	Tap821d03.p1c.C.cand.57 - score = 21.90; SMART pfam:Ribosomal_L2 (PF00181) at aa 11-90, E()=3.20e-22; pfam:Ribosomal_L2_C (PF03947) at aa 96-231, E()=6.70e-64; 60S ribosomal protein L2/L8, putative	join(382462..382480,382621..383378)	Theileria annulata	3864433
TA17020	CDS	TA17020	NC_011129.2	383818	387038	D	Tap821d03.p1c.C.cand.58 - score = 80.20; SMART pfam:aconitase (PF00330) at aa 79-586, E()=2.90e-210; pfam:Aconitase_C (PF00694) at aa 716-898, E()=1.30e-62; iron-responsive element binding protein/aconitase, putative	join(383818..384053,384147..384251,384282..384552,384615..385323,385367..385542,385625..386213,386259..386598,386675..387038)	Theileria annulata	3864432
TA17015	CDS	TA17015	NC_011129.2	387115	388746	R	Tap821d03.p1c.cand.44 - score = 21.90; SMART 9 transmembrane domains at aa 30-52, 143-165, 175-197, 239-261, 291-313, 326-344, 395-417, 438-460 and 470-492; 9 probable transmembrane helices predicted for TA17015 by TMHMM2.0 at aa 30-52, 143-165, 175-197, 239-261, 291-313, 326-344, 395-417, 438-460 and 470-492; Tpr-related protein family member, putative	complement(387115..388746)	Theileria annulata	3864431
TA17010	CDS	TA17010	NC_011129.2	388937	390387	R	Tap821d03.p1c.cand.43 - score = 87.19; SMART pfam:Patatin (PF01734) at aa 78-279, E()=2.80e-05; patatin-family phospholipase, putative	complement(join(388937..389257,389319..389472,389541..389619,389683..390267,390321..390387))	Theileria annulata	3864430
TA17005	CDS	TA17005	NC_011129.2	390530	392536	R	Tap821d03.p1c.cand.43 - score = 87.19; uncharacterized protein	complement(390530..392536)	Theileria annulata	3864429
TA17000	CDS	TA17000	NC_011129.2	392914	393558	D	Tap821d03.p1c.C.cand.59 - score = 14.44; uncharacterized protein	join(392914..393320,393384..393558)	Theileria annulata	3864428
TA16995	CDS	TA16995	NC_011129.2	393619	395023	R	Tap821d03.p1c.cand.42 - score = 40.81; SMART pfam:Euk_porin (PF01459) at aa 101-375, E()=8.40e-06; porin, putative	complement(join(393619..393819,393852..394009,394041..394107,394138..394214,394280..394422,394455..394706,394737..395023))	Theileria annulata	3864427
TA16990	CDS	TA16990	NC_011129.2	395568	397975	R	Tap821d03.p1c.cand.41 - score = 65.19; SMART pfam:GTP_EFTU (PF00009) at aa 106-289, E()=2.70e-52; pfam:ras (PF00071) at aa 120-287, E()=9.50e-03; pfam:ParA (PF00991) at aa 140-242, E()=7.80e-02; pfam:GTP_EFTU_D2 (PF03144) at aa 319-394, E()=1.40e-02; pfam:EFG_C (PF00679) at aa 520-621, E()=1.30e-14; GTP-binding protein, LepA subfamily, putative	complement(join(395568..395833,395863..396590,396639..396728,396746..397043,397073..397160,397191..397359,397389..397539,397573..397975))	Theileria annulata	3864426
TA16985	CDS	TA16985	NC_011129.2	398805	406628	D	Tap821d03.p1c.C.cand.61 - score = 156.85; SMART pfam:TNFR_c6 (PF00020) at aa 1058-1092, E()=2.80e-02; 3 EGF (SM00181) domains at aa 1489-1538, E()=4.83e+01; aa 1612-1682, E()=4.74e+01; aa 1720-1760, E()=4.83e+01; 8 transmembrane domains at aa 1770-1792, 1799-1821, 1877-1899, 2023-2045, 2073-2095, 2102-2121, 2141-2160 and 2167-2189; 8 probable transmembrane helices predicted for TA16985 by TMHMM2.0 at aa 1770-1792, 1799-1821, 1877-1899, 2023-2045, 2073-2095, 2102-2121, 2141-2160 and 2167-2189; cysteine repeat modular protein 2	join(398805..398925,398958..399290,399320..399454,399486..399641,399672..400019,400051..400371,400402..401594,401628..402429,402459..402567,402603..405467,405506..406628)	Theileria annulata	3863389
TA16980	CDS	TA16980	NC_011129.2	406644	415329	R	Tap821d03.p1c.cand.40 - score = 150.90; SMART KR (SM00130) at aa 269-336, E()=2.14e-02; 5 EGF (SM00181) domains, at aa 1309-1368, E()=4.37e+01; 1369-1426, E()=7.23e+01; 17521801, E()=4.83e+01; 1875-1925, E()=4.74e+01; 1983-2023, E()=4.83e+01; ZnF_NFX (SM00438) at aa 1540-1579, E()=0.00e+00; 8 transmembrane domains at aa 2033-2055, 2062-2084, 2140-2162, 2286-2308, 2336-2358, 2363-2385, 2405-2422 and 2429-2451; 8 probable transmembrane helices predicted for TA16980 by TMHMM2.0 at aa 2033-2055, 2062-2084, 2140-2162, 2286-2308, 2336-2358, 2363-2385, 2405-2422 and 2429-2451; cysteine repeat modular protein 2	complement(join(406644..407868,407907..413262,413294..413686,413716..414126,414158..414400,414437..414679,414710..414982,415015..415165,415197..415238,415270..415329))	Theileria annulata	3863388
TA16975	CDS	TA16975	NC_011129.2	415554	416349	R	Tap821d03.p1c.cand.39 - score = 28.44; SMART pfam:CLP_protease (PF00574) at aa 15-208, E()=1.20e-69; ATP-dependent Clp-like protease, putative	complement(join(415554..415692,415727..416152,416183..416249,416334..416349))	Theileria annulata	3863387
TA16970	CDS	TA16970	NC_011129.2	416797	417156	R	Tap821d03.p1c.cand.39 - score = 28.44; SMART UBQ (SM00213) at aa 19-30, E()=3.50e-09; ubiquitin-related protein, putative	complement(join(416797..416912,416951..417047,417079..417156))	Theileria annulata	3863386
TA16965	CDS	TA16965	NC_011129.2	417432	422543	R	Tap821d03.p1c.cand.38 - score = 99.86; uncharacterized protein	complement(417432..422543)	Theileria annulata	3863385
TA16960	CDS	TA16960	NC_011129.2	422554	424027	D	Tap821d03.p1c.C.cand.62 - score = 34.15; uncharacterized protein	join(422554..422860,422900..423186,423221..423307,423392..423611,423661..423797,423887..424027)	Theileria annulata	3863384
TA16955	CDS	TA16955	NC_011129.2	424207	424518	D	Tap821d03.p1c.C.cand.63 - score = 11.92; uncharacterized protein	424207..424518	Theileria annulata	3863383
TA16950	CDS	TA16950	NC_011129.2	424537	426314	R	Tap821d03.p1c.cand.37 - score = 22.94; uncharacterized protein	complement(join(424537..424714,424768..426314))	Theileria annulata	3863382
TA16945	CDS	TA16945	NC_011129.2	426463	427665	D	SMART SANT (SM00213) at aa 19-30, E()=3.50e-09; uncharacterized protein	join(426463..426525,426556..427665)	Theileria annulata	3863381
TA16940	CDS	TA16940	NC_011129.2	427727	429980	R	uncharacterized protein	complement(join(427727..427987,428050..428383,428615..428918,428993..429478,429511..429695,429754..429980))	Theileria annulata	3863380
TA16935	CDS	TA16935	NC_011129.2	430129	430846	R	Tap821d03.p1c.cand.36 - score = 48.72; SMART RRM (SM00360) at aa 14-87, E()=4.81e-26; nucleolar phosphoprotein (Nopp34)	complement(join(430129..430416,430506..430658,430700..430846))	Theileria annulata	3863379
TA16930	CDS	TA16930	NC_011129.2	430953	432266	R	Tap821d03.p1c.cand.35 - score = 32.38; SMART pfam:AAR2 (PF05282) at aa 1-424, E()=1.10e-04; uncharacterized protein	complement(430953..432266)	Theileria annulata	3863378
TA16925	CDS	TA16925	NC_011129.2	432366	437879	R	Tap821d03.p1c.cand.34 - score = 103.92; Tap821d03.p1c.cand.34 - score = 103.92; SMART 3 WD40 (SM00320) domains, at aa 168-206, E()=8.96e-02; 209-255, E()=1.46e-01; 745-785, E()=1.07e+00; pfam:PHD (PF00628) at aa 1275-1336; BROMO (SM00297) at aa 1567-1668, E()=8.72e-04; uncharacterized protein	complement(join(432366..432909,433011..433135,433168..433520,433579..434029,434085..437879))	Theileria annulata	3863377
TA16920	CDS	TA16920	NC_011129.2	438037	439555	R	Tap821d03.p1c.cand.33 - score = 23.11; Tap821d03.p1c.cand.33 - score = 23.11; SMART STYKc (SM00221) at aa 12-273, E()=2.31e+00; protein kinase, putative	complement(join(438037..438323,438386..438496,438562..439109,439196..439407,439493..439555))	Theileria annulata	3863376
TA16915	CDS	TA16915	NC_011129.2	440193	441916	D	Tap821d03.p1c.C.cand.65 - score = 30.85; SMART 6 WD40 (SM00320) domains at aa 31-70, E()=2.28e+02; 73-112, E()=3.68e+01; 115-154, E()=1.40e-03; 157-197, E()=1.75e-04; 201-238, E()=2.23e-01; 242-281, E()=3.71e-01; uncharacterized protein	join(440193..440387,440578..441536,441601..441916)	Theileria annulata	3863375
TA16910	CDS	TA16910	NC_011129.2	441971	443258	R	Tap821d03.p1c.cand.32 - score = 20.58; uncharacterized protein	complement(join(441971..443093,443149..443258))	Theileria annulata	3863374
TA16905	CDS	TA16905	NC_011129.2	443557	444793	D	Tap821d03.p1c.C.cand.66 - score = 25.07; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA16905 by TMHMM2.0 at aa 5-27; uncharacterized protein	join(443557..444511,444573..444793)	Theileria annulata	3863373
TA16900	CDS	TA16900	NC_011129.2	444826	447021	R	Tap821d03.p1c.cand.31 - score = 36.43; SMART 10 transmembrane domains at aa 12-34, 364-386, 393-415, 420-442, 455-477, 497-519, 526-548, 582-604, 625-644 and 654-686; 10 probable transmembrane helices predicted for TA16900 by TMHMM2.0 at aa 12-34, 364-386, 393-415, 420-442, 455-477, 497-519, 526-548, 582-604, 625-644 and 654-676; Tpr-related protein family member, putative	complement(444826..447021)	Theileria annulata	3863372
TA16895	CDS	TA16895	NC_011129.2	447130	448863	R	Tap821d03.p1c.cand.30 - score = 24.73; SMART 11 transmembrane domains at aa 20-39, 221-243, 253-275, 282-304, 319-341, 353-375, 379-401, 406-428, 453-475, 496-515 and 525-547; 11 probable transmembrane helices predicted for TA16895 by TMHMM2.0 at aa 20-39, 221-243, 253-275, 282-304, 319-341, 353-375, 379-401, 406-428, 453-475, 496-515 and 525-547; Signal anchor predicted for TA16895 by SignalP 2.0 HMM (Signal peptide probability 0.022, signal anchor probability 0.834) with cleavage site probability 0.006 between residues 41 and 42; Tpr-related protein family member, putative	complement(447130..448863)	Theileria annulata	3863371
TA16890	CDS	TA16890	NC_011129.2	449015	451137	R	SMART pfam:tRNA-synt_1d (PF00750) at aa 84-496, E()=1.80e-10; arginyl-tRNA synthetase, putative	complement(join(449015..449283,449314..449490,449535..449784,449824..450581,450648..450900,450976..451137))	Theileria annulata	3863370
TA16885	CDS	TA16885	NC_011129.2	451540	452485	R	Tap821d03.p1c.cand.28 - score = 20.03; SMART pfam:Ribosomal_L10 (PF00466) at aa 17-127, E()=3.80e-02; 60S ribosomal protein L10e, putative	complement(join(451540..451623,451691..451852,451911..452042,452112..452202,452277..452485))	Theileria annulata	3864208
TA16880	CDS	TA16880	NC_011129.2	452747	454186	D	Tap821d03.p1c.C.cand.67 - score = 23.12; SMART 1 transmembrane domain at aa 31-53; RING (SM00184) at aa 382-418, E()=1.79e-06; 1 probable transmembrane helix predicted for TA16880 by TMHMM2.0 at aa 31-53; Signal anchor predicted for TA16880 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.903) with cleavage site probability 0.001 between residues 55 and 56; uncharacterized protein	join(452747..453556,453629..453784,453848..454186)	Theileria annulata	3864207
TA16875	CDS	TA16875	NC_011129.2	454442	455776	D	Tap821d03.p1c.C.cand.68 - score = 13.93; SMART 11 transmembrane domains at aa 10-32, 52-74, 89-111, 118-140, 155-173, 180-202, 222-244, 257-279, 328-350, 370-392, 396-418; 11 probable transmembrane helices predicted for TA16875 by TMHMM2.0 at aa 10-32, 52-74, 89-111, 118-140, 155-173, 180-202, 222-244, 257-279, 328-350, 370-392 and 396-418; Tpr-related protein family member, putative	454442..455776	Theileria annulata	3864206
TA16870	CDS	TA16870	NC_011129.2	455911	458193	D	Tap821d03.p1c.C.cand.69 - score = 37.06; SMART 9 transmembrane domains at aa 47-69, 90-112, 122-144, 151-173, 188-210, 273-295, 604-626, 647-669, 674-693; 9 probable transmembrane helices predicted for TA16870 by TMHMM2.0 at aa 47-69, 90-112, 122-144, 151-173, 188-210, 273-295, 604-626, 647-669 and 674-693; Tpr-related protein family member, putative	455911..458193	Theileria annulata	3864205
TA16865	CDS	TA16865	NC_011129.2	458241	462212	R	Tap821d03.p1c.cand.27 - score = 77.45; uncharacterized protein	complement(join(458241..458321,458360..461607,461659..461793,461894..462212))	Theileria annulata	3864204
TA16860	CDS	TA16860	NC_011129.2	462572	463919	D	SMART 4 transmembrane domains at aa 33-55, 75-97, 17-139, 274-296; 4 probable transmembrane helices predicted for TA16860 by TMHMM2.0 at aa 33-55, 75-97, 117-139 and 274-296; Signal anchor predicted for TA16860 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues 53 and 54; uncharacterized protein	join(462572..462704,462829..462954,462995..463279,463342..463515,463648..463919)	Theileria annulata	3864203
TA16855	CDS	TA16855	NC_011129.2	464093	466483	D	Tap821d03.p1c.C.cand.71 - score = 52.16; SMART DEXDc (SM00487) at aa 78-262, E()=9.96e-31; AAA (SM00382) at aa 2.02e-03; HELICc (SM00490) at aa 310-407, E()=1.18e-14; pfam:HA2 (PF04408) at aa 466-560 E()=1.80e-37; DEAD-box family helicase, putative	join(464093..464147,464257..464795,464888..466483)	Theileria annulata	3864202
TA16850	CDS	TA16850	NC_011129.2	466633	468985	R	Tap821d03.p1c.cand.26 - score = 51.28; SMART DnaJ (SM00271) at aa 499-518, E()=3.43e+00; uncharacterized protein	complement(join(466633..468719,468814..468985))	Theileria annulata	3864201
TA16845	CDS	TA16845	NC_011129.2	469521	471639	D	Tap821d03.p1c.C.cand.72 - score = 29.22; SMART pfam:ThiF (PF00899) at aa 119-255, E()=3.70e-49; pfam:MoeZ_MoeB (PF05237) at aa 294-397, E()=8.10e-13; pfam:Rhodanese (PF00581) at aa 437-538, E()=2.10e-02; uncharacterized protein	join(469521..469953,470066..470117,470170..470270,470373..470463,470524..470851,470911..471046,471110..471639)	Theileria annulata	3864200
TA16840	CDS	TA16840	NC_011129.2	473065	474174	R	Tap821d03.p1c.cand.25 - score = 14.28; SMART pfam:ATP-bind (PF03029) at aa 5-233, E()=1.30e-70; uncharacterized protein	complement(join(473065..473487,473639..473739,473772..473843,473949..474174))	Theileria annulata	3864199
TA16835	CDS	TA16835	NC_011129.2	474348	475301	R	Tap821d03.p1c.cand.24 - score = 8.46; uncharacterized protein	complement(join(474348..474541,474613..474747,474820..474949,475122..475301))	Theileria annulata	3864198
TA16830	CDS	TA16830	NC_011129.2	475591	476972	D	Tap821d03.p1c.C.cand.73 - score = 16.70; SMART 1 transmembrane domain at aa 284-306; 2 pfam:MtN3_slv (PF03083) domains at aa 158-253, E()=1.80e-05; 326-413, E()=1.50e-05; 7 probable transmembrane helices predicted for TA16830 by TMHMM2.0 at aa 158-180, 201-223, 238-272, 284-306, 311-333, 364-382 and 386-408; Signal peptide predicted for TA16830 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.000) with cleavage site probability 0.901 between residues 16 and 17; uncharacterized protein	join(475591..476590,476656..476972)	Theileria annulata	3864197
TA16825	CDS	TA16825	NC_011129.2	477402	478894	D	SMART ACTIN (SM00268) at aa 2-468, E()=2.35e-19; actin, putative	join(477402..477671,477758..478894)	Theileria annulata	3864196
TA16820	CDS	TA16820	NC_011129.2	479050	480120	R	Tap821d03.p1c.cand.23 - score = 32.11; Signal peptide predicted for TA16820 by SignalP 2.0 HMM (Signal peptide probability 0.989, signal anchor probability 0.002) with cleavage site probability 0.811 between residues 17 and 18; uncharacterized protein	complement(479050..480120)	Theileria annulata	3864195
TA16815	CDS	TA16815	NC_011129.2	480869	483026	R	Tap821d03.p1c.cand.22 - score = 43.92; SMART pfam:DUF654 (PF04910) at aa 217-595, E()=9.90e-04; uncharacterized protein	complement(join(480869..481714,481805..481924,481975..482152,482219..482414,482454..482580,482706..483026))	Theileria annulata	3864194
TA16810	CDS	TA16810	NC_011129.2	483189	484817	R	Tap821d03.p1c.cand.21 - score = 27.27; SMART pfam:PseudoU_synth_2 (PF00849) at aa 144-323, E()=3.20e-33; (RNA) pseudouridylate synthase, putative	complement(join(483189..483561,483692..484545,484719..484817))	Theileria annulata	3864193
TA16805	CDS	TA16805	NC_011129.2	484916	486829	D	Tap821d03.p1c.C.cand.75 - score = 62.54; uncharacterized protein	484916..486829	Theileria annulata	3864192
TA16800	CDS	TA16800	NC_011129.2	487076	488194	D	Tap821d03.p1c.C.cand.75 - score = 62.54; SMART 1 transmembrane domain at aa 112-134; CPDc (SM00577) at aa 183-309, E()=1.05e-21; 1 probable transmembrane helix predicted for TA16800 by TMHMM2.0 at aa 112-134; uncharacterized protein	487076..488194	Theileria annulata	3864191
TA16795	CDS	TA16795	NC_011129.2	488616	490724	R	Tap821d03.p1c.cand.20 - score = 41.34; SMART 9 transmembrane domains at aa 346-368, 375-397, 402-424, 437-459, 479-501, 508-530, 564-586, 606-628 and 634-656; 9 probable transmembrane helices predicted for TA16795 by TMHMM2.0 at aa 346-368, 375-397, 402-424, 437-459, 479-501, 508-530, 564-586, 606-628 and 634-656; Tpr-related protein family member, putative	complement(488616..490724)	Theileria annulata	3864190
TA16790	CDS	TA16790	NC_011129.2	490820	493423	R	Tap821d03.p1c.cand.19 - score = 103.70; SMART 10 transmembrane domains at aa 20-39, 505-527, 534-556, 561-583, 596-618, 654-676, 689-711, 740-762, 783-805 and 815-837; 10 probable transmembrane helices predicted for TA16790 by TMHMM2.0 at aa 20-39, 505-527, 534-556, 561-583, 596-618, 654-676, 689-711, 740-762, 783-805 and 815-837; Tpr-related protein family member, putative	complement(490820..493423)	Theileria annulata	3863694
TA16785	CDS	TA16785	NC_011129.2	493630	496072	R	Tap821d03.p1c.cand.19 - score = 103.70; SMART pfam:dor1 (PF04124) at aa 3-354, E()=3.30e-02; pfam:Vps53_n (PF04100) at aa 14-423, E()=4.50e-13; uncharacterized protein	complement(join(493630..493703,493733..493825,493852..494229,494261..494593,494629..494956,494999..495121,495168..495226,495257..495636,495699..496072))	Theileria annulata	3863693
TA16780	CDS	TA16780	NC_011129.2	496302	499569	D	Tap821d03.p1c.C.cand.76 - score = 78.15; SMART pfam:tRNA-synt_2c (PF01411) at aa 81-821, E()=1.90e-293; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA16780 by TMHMM2.0 at aa 2-24; Signal peptide predicted for TA16780 by SignalP 2.0 HMM (Signal peptide probability 0.620, signal anchor probability 0.295) with cleavage site probability 0.492 between residues 22 and 23; alanyl-tRNA synthetase, putative	join(496302..498231,498291..498742,498822..499127,499183..499569)	Theileria annulata	3863692
TA16775	CDS	TA16775	NC_011129.2	499698	501015	D	SMART WD40 (SM00320) at aa 222-263, E()=1.92e-01; 267-309, E()=4.44e+00; uncharacterized protein	join(499698..499862,499892..500042,500073..500166,500233..500320,500357..500827,500905..501015)	Theileria annulata	3863691
TA16770	CDS	TA16770	NC_011129.2	501040	503046	D	Tap821d03.p1c.C.cand.77 - score = 65.55; or 7, fibronectin/fibrinogen-binding protein, putative; but no relevant pfam hit; uncharacterized protein	join(501040..502171,502213..502472,502528..503046)	Theileria annulata	3863690
TA16765	CDS	TA16765	NC_011129.2	503205	504563	R	Tap821d03.p1c.cand.18 - score = 16.91; SMART 10 transmembrane domains, at aa 20-42, 118-140, 147-169, 173-195, 216-238, 268-290, 303-325, 376-398, 419-441 and 451-473; 9 probable transmembrane helices predicted for TA16765 by TMHMM2.0 at aa 85-107, 114-136, 140-162, 183-205, 235-257, 270-292, 343-365, 386-408 and 418-440; Tpr-related protein family member, putative	complement(503205..504563)	Theileria annulata	3863689
TA16760	CDS	TA16760	NC_011129.2	504832	506976	R	Tap821d03.p1c.cand.17 - score = 37.49; uncharacterized protein	complement(504832..506976)	Theileria annulata	3863688
TA16755	CDS	TA16755	NC_011129.2	507421	509309	D	Tap821d03.p1c.C.cand.79 - score = 48.88; uncharacterized protein	join(507421..507684,507749..508868,508904..509024,509075..509309)	Theileria annulata	3863687
TA16750	CDS	TA16750	NC_011129.2	509875	510890	R	Tap821d03.p1c.cand.16 - score = 36.05; Signal peptide predicted for TA16750 by SignalP 2.0 HMM (Signal peptide probability 0.739, signal anchor probability 0.018) with cleavage site probability 0.560 between residues 23 and 24; uncharacterized protein	complement(join(509875..510213,510245..510312,510364..510461,510490..510562,510593..510635,510666..510770,510801..510890))	Theileria annulata	3863686
TA16745	CDS	TA16745	NC_011129.2	511063	511801	D	Tap821d03.p1c.C.cand.80 - score = 17.34; SMART pfam:Rad10 (PF03834) at aa 10-76, E()=4.50e-20; DNA repair protein (RAD10)	join(511063..511136,511175..511692,511743..511801)	Theileria annulata	3863685
TA16740	CDS	TA16740	NC_011129.2	512534	513265	D	Tap821d03.p1c.C.cand.81 - score = 18.75; uncharacterized protein	512534..513265	Theileria annulata	3863684
TA16735	CDS	TA16735	NC_011129.2	513907	517137	D	Tap821d03.p1c.C.cand.82 - score = 29.23; SMART 11 transmembrane domains at aa 12-31, 41-61, 68-90, 94-113, 126-148, 158-180, 237-259, 279-301, 308-325, 340-362 and 764-786; 11 probable transmembrane helices predicted for TA16735 by TMHMM2.0 at aa 12-31, 41-61, 68-90, 94-113, 126-148, 158-180, 237-259, 279-301, 308-325, 340-362 and 764-786; Signal anchor predicted for TA16735 by SignalP 2.0 HMM (Signal peptide probability 0.004, signal anchor probability 0.936) with cleavage site probability 0.001 between residues 37 and 38; uncharacterized protein	513907..517137	Theileria annulata	3863683
TA16730	CDS	TA16730	NC_011129.2	517305	518348	D	Tap821d03.p1c.C.cand.83 - score = 23.41; SMART pfam:Pribosyltran (PF00156) at aa 149-294, E()=8.10e-24; phosphoribosyl pyrophosphate synthetase, putative	join(517305..517667,517734..518348)	Theileria annulata	3863682
TA16725	CDS	TA16725	NC_011129.2	518495	518775	R	Tap821d03.p1c.cand.14 - score = 9.91; SMART Sm (SM00651) at aa 8-72, E()=1.37e-09; U6 snRNA-associated Sm-lke protein, putative	complement(join(518495..518637,518688..518775))	Theileria annulata	3863681
TA16720	CDS	TA16720	NC_011129.2	518832	519845	R	Tap821d03.p1c.cand.13 - score = 18.17; SMART 1 transmembrane domain, at aa 217-239; 1 probable transmembrane helix predicted for TA16720 by TMHMM2.0 at aa 217-239; uncharacterized protein	complement(join(518832..519062,519105..519230,519283..519472,519619..519845))	Theileria annulata	3863680
TA16715	CDS	TA16715	NC_011129.2	520396	521480	D	Tap821d03.p1c.C.cand.84 - score = 13.21; SMART pfam:PH (PF00169) at aa 133-233, E()=5.50e-03; uncharacterized protein	join(520396..520473,520620..520706,520750..520947,521124..521480)	Theileria annulata	3863679
TA16710	CDS	TA16710	NC_011129.2	521572	523574	R	Tap821d03.p1c.cand.12 - score = 45.77; SMART pfam:Tfb2 (PF03849) at aa 27-514, E()=5.80e-14; TFIIH subunit, Tf2b	complement(join(521572..522666,522732..523574))	Theileria annulata	3863678
TA16685	CDS	TA16685	NC_011129.2	524200	527136	R	Tap821d03.p1c.cand.11 - score = 75.80; Signal peptide predicted for TA16685 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.755 between residues 21 and 22; GPI-Anchor Signal predicted for TA16685 by DGPI v2.04, no cleavage site predicted; polymorphic antigen precursor-like protein, putative	complement(524200..527136)	Theileria annulata	3864034
TA16630	CDS	TA16630	NC_011129.2	527838	529236	R	Tap821d03.p1c.cand.10 - score = 33.65; SMART WD40 (SM00320) at aa 19-58, E()=7.13e+00; 130-169, E()=3.08e+00; 223-261, E()=2.12e+02; uncharacterized protein	complement(join(527838..527949,528033..528045,528082..528271,528321..528377,528407..528532,528613..528721,528755..528985,529014..529145,529181..529236))	Theileria annulata	3864023
TA16575	CDS	TA16575	NC_011129.2	529833	531232	R	Tap821d03.p1c.cand.9 - score = 31.64; SMART 1 transmembrane domain at 417-434; ZnF_NFX (SM00438) at aa 104-115, E()=0.00e+00; TSP1 (SM00209) at aa 200-245, E()=1.82e-07; 1 probable transmembrane helix predicted for TA16575 by TMHMM2.0 at aa 417-434; uncharacterized protein	complement(join(529833..530180,530212..530587,530625..531232))	Theileria annulata	3864265
TA16570	CDS	TA16570	NC_011129.2	531525	533515	D	Tap821d03.p1c.C.cand.85 - score = 41.12; SMART S_TKc (SM00220) at aa 54-310, E()=2.37e-107; 4 EFh (SM00054) domains, at aa 362-390, E()=8.50e-05; 409-437, E()=1.18e-03; 445-473, E()=3.30e-02; 478-506, E()=5.16e-04; calmodulin-domain protein kinase, putative	join(531525..531642,531768..532296,532379..532473,532569..533002,533057..533165,533198..533316,533390..533515)	Theileria annulata	3864264
TA16465	CDS	TA16465	NC_011129.2	533577	536501	R	Tap821d03.p1c.cand.8 - score = 60.61; uncharacterized protein	complement(533577..536501)	Theileria annulata	3864067
TA16410	CDS	TA16410	NC_011129.2	536910	537666	R	Tap821d03.p1c.cand.7 - score = 17.51; uncharacterized protein	complement(join(536910..537156,537280..537355,537450..537545,537606..537666))	Theileria annulata	3864056
TA16405	CDS	TA16405	NC_011129.2	538200	538601	D	SMART pfam:Ribosomal_S26e (PF01283) at aa 1-114, E()=4.40e-48; 40S ribosomal protein S26e, putative	join(538200..538380,538438..538601)	Theileria annulata	3864055
TA16350	CDS	TA16350	NC_011129.2	539575	541095	D	Tap821d03.p1c.C.cand.86 - score = 30.85; SMART AAA (SM00382) at aa 39-175, E()=1.96e-10; replication factor C subunit (RPC2)	join(539575..539691,539724..539803,539858..539910,539972..540053,540085..540343,540393..540458,540521..540577,540620..540679,540760..540822,540884..540980,541019..541095)	Theileria annulata	3863400
TA16245	CDS	TA16245	NC_011129.2	542043	544095	R	SMART 1 transmembrane domain at aa 233-255; 1 probable transmembrane helix predicted for TA16245 by TMHMM2.0 at aa 233-255; uncharacterized protein	complement(join(542043..542108,542140..542239,542270..542398,542431..542549,542582..542749,542802..542986,543019..543369,543433..543578,543620..543727,543782..544095))	Theileria annulata	3863596
TA16240	CDS	TA16240	NC_011129.2	544250	547918	D	SMART pfam:RNA_pol (PF00940) at aa 810-1222, E()=2.70e-124; DNA-directed RNA polymerase (mitochondrial precursor), putative	544250..547918	Theileria annulata	3863595
TA16135	CDS	TA16135	NC_011129.2	549120	549368	R	uncharacterized protein	complement(549120..549368)	Theileria annulata	3864137
TA16130	CDS	TA16130	NC_011129.2	550206	552562	D	Tap821d03.p1c.C.cand.88 - score = 47.10; SMART RING (SM0184) at aa 685-729; uncharacterized protein	join(550206..550624,550660..550844,550907..552374,552406..552562)	Theileria annulata	3864136
TA16125	CDS	TA16125	NC_011129.2	553131	554123	D	Tap821d03.p1c.C.cand.89 - score = 20.47; SMART 1 transmembrane domain at aa 309-328; 1 probable transmembrane helix predicted for TA16125 by TMHMM2.0 at aa 309-328; Signal peptide predicted for TA16125 by SignalP 2.0 HMM (Signal peptide probability 0.688, signal anchor probability 0.010) with cleavage site probability 0.371 between residues 23 and 24; uncharacterized protein	553131..554123	Theileria annulata	3864135
TA16120	CDS	TA16120	NC_011129.2	554255	555115	R	Tap821d03.p1c.cand.5 - score = 32.12; uncharacterized protein	complement(join(554255..554392,554424..554482,554512..554763,554824..554938,554975..555115))	Theileria annulata	3864134
TA16115	CDS	TA16115	NC_011129.2	555228	555830	D	SMART pfam:Peptidase_S26 (PF00461) at aa 1-136, E()=1.60e-03; mitochondrial membrane protease, subunit 2, putative	join(555228..555332,555420..555666,555727..555830)	Theileria annulata	3864133
TA16110	CDS	TA16110	NC_011129.2	555913	556416	R	SMART 1 transmembrane domain at aa 20-39; pfam:DUF174 (PF02617) at aa 59-144, E()=6.00e-05; 1 probable transmembrane helix predicted for TA16110 by TMHMM2.0 at aa 20-39; uncharacterized protein	complement(join(555913..556072,556121..556305,556360..556416))	Theileria annulata	3864132
TA16105	CDS	TA16105	NC_011129.2	556941	557807	D	Tap821d03.p1c.C.cand.90 - score = 26.38; uncharacterized protein	556941..557807	Theileria annulata	3864131
TA16100	CDS	TA16100	NC_011129.2	557893	559129	D	SMART ENDO3c (SM00478) at aa 122-295, E()=2.55e-11; GPI-Anchor Signal predicted for TA16100 by DGPI v2.04 with cleavage site probability 0.5814 near 282; 7,8 dihydro-8-oxoguanine DNA glycosylase, putative	join(557893..557980,558057..558159,558226..558696,558811..558909,558963..559037,559066..559129)	Theileria annulata	3864346
TA16095	CDS	TA16095	NC_011129.2	559382	560890	R	Tap821d03.p1c.cand.3 - score = 50.64; SMART pfam:Collagen (PF01391) at aa 345-403, E()=6.20e-02; 1 probable transmembrane helix predicted for TA16095 by TMHMM2.0 at aa 7-26; uncharacterized protein	complement(559382..560890)	Theileria annulata	3864345
TA16090	CDS	TA16090	NC_011129.2	561370	566721	R	glutenin, putative	complement(561370..566721)	Theileria annulata	3864344
TA06655	CDS	TA06655	NC_011129.2	567702	569105	R	Tap349e08.q2ks7.cand.137 - score = 49.29; phosphoglycerate kinase (PGK1)	complement(join(567702..568904,569055..569105))	Theileria annulata	3863477
TA06650	CDS	TA06650	NC_011129.2	569316	570031	R	60S ribosomal protein L35, putative	complement(join(569316..569684,569803..569833,570003..570031))	Theileria annulata	3863476
TA06645	CDS	TA06645	NC_011129.2	570184	570772	R	Tap349e08.q2ks7.cand.136 - score = 15.85; RNA binding protein, putative	complement(join(570184..570561,570617..570772))	Theileria annulata	3863475
TA06640	CDS	TA06640	NC_011129.2	571338	572408	R	Tap349e08.q2ks7.cand.135 - score = 33.79; uncharacterized protein	complement(571338..572408)	Theileria annulata	3863474
TA06630	CDS	TA06630	NC_011129.2	572442	573147	R	Tap349e08.q2ks7.cand.135 - score = 33.79; 3 probable transmembrane helices predicted for TA06630 by TMHMM2.0 at aa 113-135, 148-170 and 180-202; uncharacterized protein	complement(join(572442..572627,572681..573007,573046..573147))	Theileria annulata	3863472
TA06625	CDS	TA06625	NC_011129.2	573588	576458	D	Tap349e08.q2ks7.C.cand.1 - score = 60.72; ATP binding protein (maybe ABC transporter), putative	join(573588..574911,574969..576458)	Theileria annulata	3863471
TA06620	CDS	TA06620	NC_011129.2	576821	578239	D	Tap349e08.q2ks7.C.cand.2 - score = 31.23; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA06620 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA06620 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.001) with cleavage site probability 0.936 between residues 16 and 17; uncharacterized protein	576821..578239	Theileria annulata	3863470
TA06615	CDS	TA06615	NC_011129.2	578500	581557	D	Tap349e08.q2ks7.C.cand.3 - score = 79.68; uncharacterized protein	join(578500..578787,578819..581557)	Theileria annulata	3863469
TA06610	CDS	TA06610	NC_011129.2	581604	583998	D	Tap349e08.q2ks7.C.cand.4 - score = 117.01; autophagy protein, putative	join(581604..582847,582879..582960,583015..583105,583135..583270,583343..583492,583549..583721,583755..583855,583885..583998)	Theileria annulata	3863429
TA06605	CDS	TA06605	NC_011129.2	584422	587268	D	Tap349e08.q2ks7.C.cand.4 - score = 117.01; threonyl-tRNA synthetase, putative	join(584422..584575,584623..584765,584798..584987,585016..585107,585177..585633,585681..585742,585775..585870,585924..586105,586228..586385,586441..586510,586569..586714,586787..587268)	Theileria annulata	3863428
TA06600	CDS	TA06600	NC_011129.2	587476	588808	R	Tap349e08.q2ks7.cand.134 - score = 34.31; 2 probable transmembrane helices predicted for TA06600 by TMHMM2.0 at aa 92-114 and 124-143; transketolase subunit, putative	complement(join(587476..587655,587687..587869,587899..588234,588266..588415,588468..588579,588648..588808))	Theileria annulata	3863427
TA06595	CDS	TA06595	NC_011129.2	589190	590229	R	Tap349e08.q2ks7.cand.133 - score = 26.45; Signal peptide predicted for TA06595 by SignalP 2.0 HMM (Signal peptide probability 0.937, signal anchor probability 0.000) with cleavage site probability 0.841 between residues 16 and 17; uncharacterized protein	complement(join(589190..589339,589371..589399,589451..589481,589512..589572,589607..589695,589730..589823,589881..590075,590108..590229))	Theileria annulata	3863426
TA06590	CDS	TA06590	NC_011129.2	590280	592197	R	uncharacterized protein	complement(join(590280..590470,590506..590577,590609..590642,590676..590859,590914..591086,591159..591238,591268..591538,591613..592052,592134..592197))	Theileria annulata	3863425
TA06585	CDS	TA06585	NC_011129.2	592386	595640	R	Tap349e08.q2ks7.cand.132 - score = 80.77; uncharacterized protein	complement(join(592386..595451,595482..595640))	Theileria annulata	3863424
TA06575	CDS	TA06575	NC_011129.2	596091	596590	D	4 probable transmembrane helices predicted for TA06575 by TMHMM2.0 at aa 20-37, 61-83, 90-107 and 117-139; mitochondrial import inner membrane translocase Tim17 subunit, putative	join(596091..596460,596490..596590)	Theileria annulata	3863422
TA06570	CDS	TA06570	NC_011129.2	596766	598186	R	Tap349e08.q2ks7.cand.131 - score = 30.33; mitochondrial inner membrane subunit, putative	complement(join(596766..597028,597060..597171,597269..597444,597521..597781,597811..598186))	Theileria annulata	3863421
TA06565	CDS	TA06565	NC_011129.2	598565	598942	R	Tap349e08.q2ks7.cand.130 - score = 11.30; small ribonucleoprotein D1, putative	complement(598565..598942)	Theileria annulata	3863420
TA06560	CDS	TA06560	NC_011129.2	599409	600228	D	Tap349e08.q2ks7.C.cand.6 - score = 14.52; Signal peptide predicted for TA06560 by SignalP 2.0 HMM (Signal peptide probability 0.716, signal anchor probability 0.000) with cleavage site probability 0.404 between residues 18 and 19; uncharacterized protein	join(599409..599647,599754..600228)	Theileria annulata	3863419
TA06555	CDS	TA06555	NC_011129.2	600383	601250	R	Tap349e08.q2ks7.cand.129 - score = 41.34; co-chaperone (GrpE)	complement(join(600383..600838,600942..601250))	Theileria annulata	3863418
TA06550	CDS	TA06550	NC_011129.2	601435	602677	R	Tap349e08.q2ks7.cand.129 - score = 41.34; ribosome biogenesis regulatory protein, putative	complement(join(601435..601579,601647..601714,601745..601818,601868..602005,602035..602213,602372..602476,602667..602677))	Theileria annulata	3863417
TA06545	CDS	TA06545	NC_011129.2	603131	605125	D	Tap349e08.q2ks7.C.cand.7 - score = 62.20; polyadenylate (poly(A)) binding protein, putative	603131..605125	Theileria annulata	3863416
TA06540	CDS	TA06540	NC_011129.2	605787	606937	D	Tap349e08.q2ks7.C.cand.8 - score = 32.47; uncharacterized protein	join(605787..606411,606471..606937)	Theileria annulata	3863415
TA06535	CDS	TA06535	NC_011129.2	607542	607718	D	Tap349e08.q2ks7.C.cand.9 - score = 8.39; uncharacterized protein	join(607542..607562,607614..607718)	Theileria annulata	3863414
TA06530	CDS	TA06530	NC_011129.2	607974	608775	D	Tap349e08.q2ks7.C.cand.10 - score = 20.45; protein kinase, putative	join(607974..608115,608157..608302,608333..608464,608506..608625,608656..608775)	Theileria annulata	3863413
TA06525	CDS	TA06525	NC_011129.2	609175	610691	D	Tap349e08.q2ks7.C.cand.11 - score = 32.51; choline/ethanolamine kinase, putative	join(609175..609490,609559..609659,609689..609835,609865..610020,610047..610146,610222..610509,610570..610691)	Theileria annulata	3863412
TA06520	CDS	TA06520	NC_011129.2	610779	612774	R	Tap349e08.q2ks7.cand.128 - score = 61.23; uncharacterized protein	complement(join(610779..610878,610909..611003,611045..611124,611229..612328,612415..612455,612499..612642,612709..612774))	Theileria annulata	3863411
TA06515	CDS	TA06515	NC_011129.2	613074	613624	R	Tap349e08.q2ks7.cand.127 - score = 30.60; uncharacterized protein	complement(join(613074..613348,613414..613624))	Theileria annulata	3863410
TA06510	CDS	TA06510	NC_011129.2	613796	614731	R	Tap349e08.q2ks7.cand.127 - score = 30.60; 1 probable transmembrane helix predicted for TA06510 by TMHMM2.0 at aa 288-310; Signal peptide predicted for TA06510 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.000) with cleavage site probability 0.701 between residues 19 and 20; GPI-Anchor Signal predicted for TA06510 by DGPI v2.04 with cleavage site probability 0.348 near 286; uncharacterized protein	complement(613796..614731)	Theileria annulata	3864541
TA06505	CDS	TA06505	NC_011129.2	614938	616764	R	uncharacterized protein	complement(join(614938..616281,616333..616764))	Theileria annulata	3864540
TA06500	CDS	TA06500	NC_011129.2	617939	620651	D	Tap349e08.q2ks7.C.cand.12 - score = 91.68; transitional endoplasmic reticulum ATPase (CDC48)	join(617939..618752,618794..619159,619195..619307,619364..619703,619754..619822,619885..620651)	Theileria annulata	3864539
TA06495	CDS	TA06495	NC_011129.2	620731	621666	R	uncharacterized protein	complement(620731..621666)	Theileria annulata	3864538
TA06490	CDS	TA06490	NC_011129.2	621724	625179	R	SWI/SNF family trascriptional activator protein, putative	complement(join(621724..621810,621877..622031,622088..622220,622280..622472,622558..622709,622740..623211,623242..623729,623783..624255,624294..625179))	Theileria annulata	3864537
TA06485	CDS	TA06485	NC_011129.2	625462	627331	R	uncharacterized protein	complement(join(625462..625933,625962..626342,626351..626432,626478..626560,626591..626766,626796..626883,626957..627021,627052..627147,627179..627331))	Theileria annulata	3864536
TA06480	CDS	TA06480	NC_011129.2	627446	628637	R	Tap349e08.q2ks7.cand.122 - score = 39.27; uncharacterized protein	complement(join(627446..627593,627627..627724,627756..628379,628410..628637))	Theileria annulata	3864535
TA06470	CDS	TA06470	NC_011129.2	628985	631951	D	Tap349e08.q2ks7.C.cand.13 - score = 106.32; Signal peptide predicted for TA06470 by SignalP 2.0 HMM (Signal peptide probability 0.926, signal anchor probability 0.000) with cleavage site probability 0.761 between residues 20 and 21; chaperone protein (HSP90)	628985..631951	Theileria annulata	3864533
TA06465	CDS	TA06465	NC_011129.2	632202	635900	D	Tap349e08.q2ks7.C.cand.14 - score = 77.44; uncharacterized protein	632202..635900	Theileria annulata	3864532
TA06460	CDS	TA06460	NC_011129.2	636050	638473	R	Tap349e08.q2ks7.cand.121 - score = 63.47; uncharacterized protein	complement(join(636050..636407,636438..637219,637259..637393,637450..637552,637583..638081,638137..638473))	Theileria annulata	3864531
TA06455	CDS	TA06455	NC_011129.2	638630	640627	R	Tap349e08.q2ks7.cand.120 - score = 57.45; uncharacterized protein	complement(638630..640627)	Theileria annulata	3864530
TA06450	CDS	TA06450	NC_011129.2	641220	641903	D	Tap349e08.q2ks7.C.cand.15 - score = 14.18; ATP synthase delta chain, putative	641220..641903	Theileria annulata	3864529
TA06445	CDS	TA06445	NC_011129.2	641932	642351	R	Tap349e08.q2ks7.cand.119 - score = 13.51; vesicular cargo protein, putative	complement(join(641932..642144,642199..642351))	Theileria annulata	3864528
TA06440	CDS	TA06440	NC_011129.2	642610	643473	D	Tap349e08.q2ks7.C.cand.16 - score = 14.80; prefoldin subunit 3, putative	join(642610..642675,642733..642803,642867..642978,643052..643156,643190..643279,643351..643473)	Theileria annulata	3864527
TA06435	CDS	TA06435	NC_011129.2	644591	644985	D	Tap349e08.q2ks7.C.cand.17 - score = 18.43; actin depolymerizing factor, putative	join(644591..644789,644822..644985)	Theileria annulata	3864526
TA06430	CDS	TA06430	NC_011129.2	645111	647330	R	1 probable transmembrane helix predicted for TA06430 by TMHMM2.0 at aa 574-592; uncharacterized protein	complement(join(645111..645422,645452..645988,646087..646272,646332..646470,646519..646669,646749..646871,646906..647058,647147..647330))	Theileria annulata	3864525
TA06425	CDS	TA06425	NC_011129.2	648068	648485	D	Tap349e08.q2ks7.C.cand.18 - score = 11.09; 60S ribosomal protein L31, putative	join(648068..648229,648288..648485)	Theileria annulata	3864524
TA06415	CDS	TA06415	NC_011129.2	648630	650363	R	Tap349e08.q2ks7.cand.117 - score = 38.99; DEAD-box family (RNA) helicase, putative	complement(join(648630..648891,648930..649040,649072..649118,649159..649312,649369..649539,649568..649602,649636..649825,649855..649940,649971..650113,650154..650193,650235..650363))	Theileria annulata	3864228
TA06410	CDS	TA06410	NC_011129.2	650371	655518	R	Tap349e08.q2ks7.cand.116 - score = 129.56; 11 probable transmembrane helices predicted for TA06410 by TMHMM2.0 at aa 143-165, 205-227, 242-259, 655-674, 684-706, 1171-1193, 1208-1227, 1234-1256, 1266-1285, 1292-1311 and 1365-1387; P-type ATPase, putative	complement(join(650371..650508,650587..650788,650821..650946,651155..651232,651264..651449,651538..651608,651651..651770,651820..652502,652546..652617,652647..652741,652809..653007,653082..653262,653348..653407,653439..654946,654977..655014,655046..655518))	Theileria annulata	3864227
TA06405	CDS	TA06405	NC_011129.2	655724	657283	R	Tap349e08.q2ks7.cand.116 - score = 129.56; uncharacterized protein	complement(join(655724..655796,655828..656816,656847..657068,657098..657283))	Theileria annulata	3864226
TA06400	CDS	TA06400	NC_011129.2	657485	660831	D	Tap349e08.q2ks7.C.cand.19 - score = 49.38; uncharacterized protein	join(657485..659407,659439..659987,660034..660831)	Theileria annulata	3864225
TA06395	CDS	TA06395	NC_011129.2	661311	665287	D	Tap349e08.q2ks7.C.cand.20 - score = 81.34; uncharacterized protein	join(661311..661716,661803..665287)	Theileria annulata	3864224
TA06390	CDS	TA06390	NC_011129.2	665367	666578	R	Tap349e08.q2ks7.cand.115 - score = 32.19; uncharacterized protein	complement(665367..666578)	Theileria annulata	3864223
TA06385	CDS	TA06385	NC_011129.2	666874	667278	R	Tap349e08.q2ks7.cand.115 - score = 32.19; uncharacterized protein	complement(666874..667278)	Theileria annulata	3864222
TA06380	CDS	TA06380	NC_011129.2	668513	669383	R	Tap349e08.q2ks7.cand.114 - score = 24.35; Signal peptide predicted for TA06380 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.002) with cleavage site probability 0.433 between residues 23 and 24; uncharacterized protein	complement(join(668513..668956,669033..669383))	Theileria annulata	3864221
TA06375	CDS	TA06375	NC_011129.2	669780	670232	R	Tap349e08.q2ks7.cand.113 - score = 63.43; 1 probable transmembrane helix predicted for TA06375 by TMHMM2.0 at aa 4-26; Signal peptide predicted for TA06375 by SignalP 2.0 HMM (Signal peptide probability 0.972, signal anchor probability 0.019) with cleavage site probability 0.830 between residues 22 and 23; GPI-Anchor Signal predicted for TA06375 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(669780..670232)	Theileria annulata	3864220
TA06370	CDS	TA06370	NC_011129.2	670430	673390	R	Tap349e08.q2ks7.cand.113 - score = 63.43; 10 probable transmembrane helices predicted for TA06370 by TMHMM2.0 at aa 13-35, 576-598, 605-627, 642-659, 668-690, 710-732, 745-767, 815-837, 858-880 and 890-912; Tpr-related protein family member, putative	complement(670430..673390)	Theileria annulata	3864219
TA06360	CDS	TA06360	NC_011129.2	673518	675194	R	Tap349e08.q2ks7.cand.112 - score = 22.78; 11 probable transmembrane helices predicted for TA06360 by TMHMM2.0 at aa 20-39, 112-134, 144-166, 171-193, 208-230, 344-366, 376-393, 420-442, 462-484, 491-513 and 528-550; Signal anchor predicted for TA06360 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.618) with cleavage site probability 0.002 between residues 41 and 42; Tpr-related protein family member, putative	complement(673518..675194)	Theileria annulata	3864217
TA06355	CDS	TA06355	NC_011129.2	675572	675949	R	Tap349e08.q2ks7.cand.112 - score = 22.78; Signal peptide predicted for TA06355 by SignalP 2.0 HMM (Signal peptide probability 0.979, signal anchor probability 0.000) with cleavage site probability 0.797 between residues 20 and 21; uncharacterized protein	complement(675572..675949)	Theileria annulata	3864216
TA06350	CDS	TA06350	NC_011129.2	676046	678438	R	Tap349e08.q2ks7.cand.111 - score = 76.94; uncharacterized protein	complement(join(676046..676486,676579..676791,676832..677506,677580..677707,677745..677918,677973..678263,678333..678438))	Theileria annulata	3864215
TA06345	CDS	TA06345	NC_011129.2	678652	679560	R	Tap349e08.q2ks7.cand.111 - score = 76.94; uncharacterized protein	complement(678652..679560)	Theileria annulata	3864214
TA06340	CDS	TA06340	NC_011129.2	679820	680429	R	uncharacterized protein	complement(join(679820..680198,680228..680295,680328..680429))	Theileria annulata	3864213
TA06335	CDS	TA06335	NC_011129.2	680551	681513	D	Tap349e08.q2ks7.C.cand.22 - score = 20.78; proteasome subunit beta 7, putative	join(680551..680647,680726..681169,681239..681513)	Theileria annulata	3864212
TA06330	CDS	TA06330	NC_011129.2	681731	684061	D	Tap349e08.q2ks7.C.cand.23 - score = 62.22; 10 probable transmembrane helices predicted for TA06330 by TMHMM2.0 at aa 20-42, 375-397, 404-426, 436-458, 471-493, 525-547, 560-578, 625-647, 667-689 and 693-715; Tpr-related protein family member, putative	681731..684061	Theileria annulata	3864211
TA06325	CDS	TA06325	NC_011129.2	684172	685058	D	Tap349e08.q2ks7.C.cand.23 - score = 62.22; exosome complex exonuclease (Rrp46)	join(684172..684454,684544..685058)	Theileria annulata	3864210
TA06320	CDS	TA06320	NC_011129.2	685501	687540	D	Signal peptide predicted for TA06320 by SignalP 2.0 HMM (Signal peptide probability 0.891, signal anchor probability 0.002) with cleavage site probability 0.546 between residues 24 and 25; uncharacterized protein	join(685501..686124,686249..687013,687125..687220,687247..687540)	Theileria annulata	3864209
TA06315	CDS	TA06315	NC_011129.2	687879	690413	R	Tap349e08.q2ks7.cand.110 - score = 43.55; 1 probable transmembrane helix predicted for TA06315 by TMHMM2.0 at aa 52-74; uncharacterized protein	complement(687879..690413)	Theileria annulata	3863468
TA06305	CDS	TA06305	NC_011129.2	691084	694130	D	uncharacterized protein	join(691084..691466,691502..691625,691656..692843,692873..693043,693099..693776,693807..693971,694002..694130)	Theileria annulata	3863466
TA06300	CDS	TA06300	NC_011129.2	694247	695461	D	Tap349e08.q2ks7.C.cand.27 - score = 33.49; uncharacterized protein	join(694247..694452,694514..694745,694787..695461)	Theileria annulata	3863465
TA06295	CDS	TA06295	NC_011129.2	695600	697719	D	Tap349e08.q2ks7.C.cand.28 - score = 52.28; uncharacterized protein	join(695600..697213,697241..697324,697354..697719)	Theileria annulata	3863464
TA06290	CDS	TA06290	NC_011129.2	697809	701701	R	Tap349e08.q2ks7.cand.107 - score = 100.86; DNA polymerase delta catalytic subunit (Pold1)	complement(join(697809..698057,698088..698254,698287..698433,698497..698559,698594..698656,698687..698944,698974..699081,699117..699240,699272..699352,699391..699552,699582..699638,699669..699939,699982..700129,700159..700689,700726..701140,701172..701246,701276..701511,701590..701701))	Theileria annulata	3863463
TA06285	CDS	TA06285	NC_011129.2	702099	703014	D	Tap349e08.q2ks7.C.cand.29 - score = 22.35; exosome ribonuclease PH (Rrp42)	join(702099..702257,702297..702518,702557..702708,702741..703014)	Theileria annulata	3863462
TA06280	CDS	TA06280	NC_011129.2	703049	705658	R	Signal peptide predicted for TA06280 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.000) with cleavage site probability 0.784 between residues 20 and 21; uncharacterized protein	complement(703049..705658)	Theileria annulata	3863461
TA06275	CDS	TA06275	NC_011129.2	705896	706254	R	uncharacterized protein	complement(join(705896..705998,706030..706115,706171..706254))	Theileria annulata	3863460
TA06270	CDS	TA06270	NC_011129.2	706352	708167	D	Tap349e08.q2ks7.C.cand.30 - score = 44.77; uncharacterized protein	join(706352..706453,706549..706695,706727..706834,706867..706976,707008..707185,707240..707309,707340..707656,707687..707849,707881..708167)	Theileria annulata	3863459
TA06265	CDS	TA06265	NC_011129.2	708388	710247	D	Tap349e08.q2ks7.C.cand.31 - score = 66.00; 10 probable transmembrane helices predicted for TA06265 by TMHMM2.0 at aa 22-44, 144-166, 176-198, 205-227, 242-264, 392-414, 429-451, 501-523, 543-565 and 578-596; Tpr-related protein family member, putative	708388..710247	Theileria annulata	3863458
TA06260	CDS	TA06260	NC_011129.2	710444	713464	D	Tap349e08.q2ks7.C.cand.31 - score = 66.00; 11 probable transmembrane helices predicted for TA06260 by TMHMM2.0 at aa 20-42, 54-76, 98-120, 127-149, 164-181, 190-212, 274-296, 309-326, 868-890, 911-933 and 938-960; Tpr-related protein family member, putative	710444..713464	Theileria annulata	3863457
TA06245	CDS	TA06245	NC_011129.2	713912	714649	R	Tap349e08.q2ks7.cand.103 - score = 11.20; uncharacterized protein	complement(713912..714649)	Theileria annulata	3863454
TA06240	CDS	TA06240	NC_011129.2	716747	717049	D	1 probable transmembrane helix predicted for TA06240 by TMHMM2.0 at aa 47-66; Signal anchor predicted for TA06240 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.898) with cleavage site probability 0.000 between residues -1 and 0; protein-transport (SEC61), beta subunit	join(716747..716775,716823..716921,716953..717049)	Theileria annulata	3863453
TA06235	CDS	TA06235	NC_011129.2	717320	719113	D	uncharacterized protein	join(717320..717451,717560..717668,717698..717906,717969..718272,718306..718415,718450..718565,718625..718733,718768..718980,719021..719113)	Theileria annulata	3863452
TA06230	CDS	TA06230	NC_011129.2	719507	719954	R	uncharacterized protein	complement(join(719507..719692,719724..719954))	Theileria annulata	3863451
TA06225	CDS	TA06225	NC_011129.2	720296	720859	R	Tap349e08.q2ks7.cand.101 - score = 8.92; uncharacterized protein	complement(720296..720859)	Theileria annulata	3863450
TA06220	CDS	TA06220	NC_011129.2	721785	722321	R	Tap349e08.q2ks7.cand.100 - score = 9.64; 3 probable transmembrane helices predicted for TA06220 by TMHMM2.0 at aa 7-26, 31-53 and 116-138; Signal peptide predicted for TA06220 by SignalP 2.0 HMM (Signal peptide probability 0.655, signal anchor probability 0.233) with cleavage site probability 0.142 between residues 20 and 21; uncharacterized protein	complement(721785..722321)	Theileria annulata	3863714
TA06215	CDS	TA06215	NC_011129.2	722896	723705	R	uncharacterized protein	complement(join(722896..723573,723667..723705))	Theileria annulata	3863713
TA06210	CDS	TA06210	NC_011129.2	724024	724678	D	Tap349e08.q2ks7.C.cand.33 - score = 11.22; cytochrome C1 heme lyase, putative	join(724024..724466,724537..724678)	Theileria annulata	3863712
TA06205	CDS	TA06205	NC_011129.2	725444	725923	R	Tap349e08.q2ks7.cand.98 - score = 15.65; eukaryotic translation initiation factor (eIF5A)	complement(725444..725923)	Theileria annulata	3863711
TA06200	CDS	TA06200	NC_011129.2	726320	729412	R	Tap349e08.q2ks7.cand.97 - score = 56.90; uncharacterized protein	complement(join(726320..728187,728218..728342,728499..729412))	Theileria annulata	3863710
TA06195	CDS	TA06195	NC_011129.2	730218	730794	R	Tap349e08.q2ks7.cand.96 - score = 29.40; 1 probable transmembrane helix predicted for TA06195 by TMHMM2.0 at aa 38-60; GPI-Anchor Signal predicted for TA06195 by DGPI v2.04 with cleavage site probability 0.3306 near 140; uncharacterized protein	complement(join(730218..730374,730433..730794))	Theileria annulata	3863709
TA06185	CDS	TA06185	NC_011129.2	730903	731748	R	Tap349e08.q2ks7.cand.96 - score = 29.40; casein kinase II, beta subunit, putative	complement(join(730903..730992,731024..731125,731169..731624,731653..731748))	Theileria annulata	3863708
TA06180	CDS	TA06180	NC_011129.2	732154	733701	D	Tap349e08.q2ks7.C.cand.35 - score = 35.23; protein kinase, putative	732154..733701	Theileria annulata	3863707
TA06175	CDS	TA06175	NC_011129.2	733820	734731	R	Tap349e08.q2ks7.cand.95 - score = 27.48; RNA-binding (SR) protein, putative	complement(733820..734731)	Theileria annulata	3863706
TA06170	CDS	TA06170	NC_011129.2	735356	736195	D	Tap349e08.q2ks7.C.cand.36 - score = 24.30; uncharacterized protein	join(735356..735423,735474..735593,735630..735691,735746..735819,735859..735972,736004..736195)	Theileria annulata	3863705
TA06165	CDS	TA06165	NC_011129.2	736613	737508	D	Tap349e08.q2ks7.C.cand.37 - score = 50.06; Rab GTPAse, putative	join(736613..736661,736738..736960,736989..737116,737179..737252,737283..737351,737419..737508)	Theileria annulata	3863704
TA06160	CDS	TA06160	NC_011129.2	737768	740220	D	Tap349e08.q2ks7.C.cand.37 - score = 50.06; uncharacterized protein	join(737768..737887,738089..738163,738417..738452,738497..738644,738688..738791,738830..738961,738991..739146,739177..739988,740019..740220)	Theileria annulata	3863703
TA06155	CDS	TA06155	NC_011129.2	740511	741614	D	Tap349e08.q2ks7.C.cand.38 - score = 46.79; 20S proteasome beta 5 subunit, putative	join(740511..740612,740672..740947,740979..741086,741121..741233,741309..741400,741493..741614)	Theileria annulata	3863702
TA06150	CDS	TA06150	NC_011129.2	741764	742856	D	Tap349e08.q2ks7.C.cand.38 - score = 46.79; GPI-Anchor Signal predicted for TA06150 by DGPI v2.04 with cleavage site probability 0.172 near 270; uncharacterized protein	join(741764..742059,742116..742218,742255..742413,742447..742525,742561..742700,742740..742856)	Theileria annulata	3863701
TA06135	CDS	TA06135	NC_011129.2	742943	745537	R	Tap349e08.q2ks7.cand.94 - score = 77.27; uncharacterized protein	complement(742943..745537)	Theileria annulata	3863698
TA06130	CDS	TA06130	NC_011129.2	746467	747641	R	Tap349e08.q2ks7.cand.93 - score = 74.21; DNA repair protein (RAD23)	complement(join(746467..746727,746757..746900,746936..746998,747028..747132,747163..747348,747414..747641))	Theileria annulata	3863697
TA06125	CDS	TA06125	NC_011129.2	747872	749251	R	Tap349e08.q2ks7.cand.93 - score = 74.21; uncharacterized protein	complement(join(747872..748080,748111..748229,748263..748358,748397..748517,748549..748582,748627..748688,748719..749023,749055..749251))	Theileria annulata	3863696
TA06120	CDS	TA06120	NC_011129.2	749379	750786	R	uncharacterized protein	complement(join(749379..749512,749580..750167,750198..750323,750362..750395,750452..750504,750537..750702,750739..750786))	Theileria annulata	3863695
TA06115	CDS	TA06115	NC_011129.2	751162	751988	D	Signal peptide predicted for TA06115 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.004) with cleavage site probability 0.885 between residues 24 and 25; uncharacterized protein	join(751162..751716,751746..751988)	Theileria annulata	3863810
TA06110	CDS	TA06110	NC_011129.2	752116	752631	R	Tap349e08.q2ks7.cand.91 - score = 13.53; uncharacterized protein	complement(752116..752631)	Theileria annulata	3863809
TA06105	CDS	TA06105	NC_011129.2	753012	758462	R	Tap349e08.q2ks7.cand.90 - score = 153.22; SNF2-family protein (chromodomain-helicase-DNA-binding protein 1)	complement(753012..758462)	Theileria annulata	3863808
TA06100	CDS	TA06100	NC_011129.2	760064	761279	D	Tap349e08.q2ks7.C.cand.40 - score = 73.91; splicing factor (SR protein), putative	join(760064..760168,760228..760469,760601..761279)	Theileria annulata	3863807
TA06095	CDS	TA06095	NC_011129.2	761465	764143	D	Tap349e08.q2ks7.C.cand.40 - score = 73.91; 11 probable transmembrane helices predicted for TA06095 by TMHMM2.0 at aa 12-34, 519-541, 548-570, 575-597, 610-632, 668-690, 703-725, 749-771, 792-814, 824-846 and 867-889; Tpr-related protein family member, putative	761465..764143	Theileria annulata	3863806
TA06090	CDS	TA06090	NC_011129.2	764308	765825	D	Tap349e08.q2ks7.C.cand.41 - score = 22.08; 9 probable transmembrane helices predicted for TA06090 by TMHMM2.0 at aa 15-32, 101-123, 133-155, 195-217, 237-259, 272-290, 341-363, 384-406 and 416-438; Tpr-related protein family member, putative	764308..765825	Theileria annulata	3863805
TA06080	CDS	TA06080	NC_011129.2	765919	767347	R	Tap349e08.q2ks7.cand.89 - score = 34.64; uncharacterized protein	complement(join(765919..766013,766042..766111,766144..766231,766281..766315,766372..766398,766432..766612,766662..766778,766811..766890,766943..767018,767073..767347))	Theileria annulata	3863803
TA06075	CDS	TA06075	NC_011129.2	767625	768936	D	Signal peptide predicted for TA06075 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.607 between residues 20 and 21; protein disulfide isomerase (thioredoxin), putative	join(767625..767788,767882..768033,768094..768219,768256..768557,768637..768936)	Theileria annulata	3863802
TA06070	CDS	TA06070	NC_011129.2	769457	771247	D	Tap349e08.q2ks7.C.cand.43 - score = 25.57; 12 probable transmembrane helices predicted for TA06070 by TMHMM2.0 at aa 20-42, 71-93, 113-135, 147-169, 174-196, 209-231, 339-361, 374-393, 443-465, 484-506, 516-538 and 573-595; GPI-Anchor Signal predicted for TA06070 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative	769457..771247	Theileria annulata	3863801
TA06065	CDS	TA06065	NC_011129.2	771274	772836	R	Tap349e08.q2ks7.cand.88 - score = 37.95; Signal peptide predicted for TA06065 by SignalP 2.0 HMM (Signal peptide probability 0.745, signal anchor probability 0.012) with cleavage site probability 0.582 between residues 24 and 25; GMP synthase, putative	complement(771274..772836)	Theileria annulata	3863800
TA06060	CDS	TA06060	NC_011129.2	773270	774376	R	Tap349e08.q2ks7.cand.87 - score = 26.10; uncharacterized protein	complement(join(773270..773958,774082..774376))	Theileria annulata	3863799
TA06055	CDS	TA06055	NC_011129.2	774862	775592	R	Tap349e08.q2ks7.cand.86 - score = 22.39; ubiquinol-cytochrome C reductase complex, 14 kDa subunit	complement(join(774862..774962,775058..775327,775370..775592))	Theileria annulata	3863798
TA06050	CDS	TA06050	NC_011129.2	775866	776748	R	Tap349e08.q2ks7.cand.86 - score = 22.39; 1 probable transmembrane helix predicted for TA06050 by TMHMM2.0 at aa 26-48; Signal anchor predicted for TA06050 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.856) with cleavage site probability 0.001 between residues 40 and 41; uncharacterized protein	complement(join(775866..775915,776034..776085,776116..776190,776261..776403,776502..776748))	Theileria annulata	3863797
TA06045	CDS	TA06045	NC_011129.2	776896	777689	D	Tap349e08.q2ks7.C.cand.44 - score = 20.15; transcription factor, putative; uncharacterized protein	join(776896..777355,777397..777689)	Theileria annulata	3863796
TA06040	CDS	TA06040	NC_011129.2	778263	779099	D	uncharacterized protein	join(778263..778340,778374..778429,778496..778621,778654..778696,778760..778870,778920..779099)	Theileria annulata	3863795
TA06035	CDS	TA06035	NC_011129.2	779425	780441	D	Tap349e08.q2ks7.C.cand.46 - score = 23.89; RNA binding protein, putative	779425..780441	Theileria annulata	3863794
TA06030	CDS	TA06030	NC_011129.2	780767	781784	D	2 probable transmembrane helices predicted for TA06030 by TMHMM2.0 at aa 7-29 and 33-52; Signal peptide predicted for TA06030 by SignalP 2.0 HMM (Signal peptide probability 0.667, signal anchor probability 0.278) with cleavage site probability 0.334 between residues 24 and 25; uncharacterized protein	join(780767..780918,780949..780962,781059..781436,781513..781784)	Theileria annulata	3863793
TA06025	CDS	TA06025	NC_011129.2	782217	784463	D	Tap349e08.q2ks7.C.cand.48 - score = 35.22; 9 probable transmembrane helices predicted for TA06025 by TMHMM2.0 at aa 377-399, 411-433, 437-459, 480-502, 536-558, 565-582, 618-640, 660-682 and 692-714; Tpr-related protein family member, putative	782217..784463	Theileria annulata	3863792
TA06020	CDS	TA06020	NC_011129.2	784939	785872	R	2 probable transmembrane helices predicted for TA06020 by TMHMM2.0 at aa 109-131 and 169-191; uncharacterized protein	complement(join(784939..785062,785095..785410,785441..785601,785658..785872))	Theileria annulata	3864307
TA06015	CDS	TA06015	NC_011129.2	786250	787819	D	Tap349e08.q2ks7.C.cand.49 - score = 30.68; eukaryotic translation initiation factor 2 alpha subunit, putative	join(786250..786397,786454..786674,786746..786832,786895..787010,787250..787337,787385..787471,787562..787819)	Theileria annulata	3864306
TA06010	CDS	TA06010	NC_011129.2	788101	790122	D	signal recognition particle 54kDa protein 2, putative	join(788101..788178,788271..788423,788493..788646,788701..789100,789153..789253,789316..789443,789512..789656,789731..789836,789900..790122)	Theileria annulata	3864305
TA06005	CDS	TA06005	NC_011129.2	790347	792200	D	Tap349e08.q2ks7.C.cand.52 - score = 26.67; 10 probable transmembrane helices predicted for TA06005 by TMHMM2.0 at aa 236-258, 270-292, 296-318, 339-361, 388-410, 423-445, 465-487, 507-529, 539-561 and 592-614; Tpr-related protein family member, putative	790347..792200	Theileria annulata	3864304
TA06000	CDS	TA06000	NC_011129.2	792229	793248	R	Tap349e08.q2ks7.cand.84 - score = 25.81; uncharacterized protein	complement(792229..793248)	Theileria annulata	3864303
TA05995	CDS	TA05995	NC_011129.2	794019	795262	D	Tap349e08.q2ks7.C.cand.53 - score = 25.19; DNA repair protein (RAD2 nuclease)	join(794019..794199,794268..794602,794666..794736,794788..794867,794898..794972,795026..795141,795182..795262)	Theileria annulata	3864302
TA05990	CDS	TA05990	NC_011129.2	795299	796088	R	Tap349e08.q2ks7.cand.83 - score = 15.82; uncharacterized protein	complement(join(795299..795916,795978..796088))	Theileria annulata	3864301
TA05985	CDS	TA05985	NC_011129.2	796174	798279	R	Tap349e08.q2ks7.cand.82 - score = 36.75; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05985 by SignalP 2.0 HMM (Signal peptide probability 0.918, signal anchor probability 0.000) with cleavage site probability 0.588 between residues 21 and 22; uncharacterized protein	complement(796174..798279)	Theileria annulata	3864300
TA05975	CDS	TA05975	NC_011129.2	798410	802334	D	Tap349e08.q2ks7.C.cand.54 - score = 67.16; uncharacterized protein	join(798410..799120,799150..799236,799271..799408,799440..799534,799593..799683,799757..799957,799987..800231,800269..800407,800537..800752,800783..800842,801045..802334)	Theileria annulata	3864298
TA05970	CDS	TA05970	NC_011129.2	802428	805352	R	Tap349e08.q2ks7.cand.81 - score = 58.72; 10 probable transmembrane helices predicted for TA05970 by TMHMM2.0 at aa 20-42, 587-609, 616-638, 643-665, 678-700, 720-742, 755-774, 820-842, 863-885 and 895-917; Tpr-related protein family member, putative	complement(802428..805352)	Theileria annulata	3864297
TA05965	CDS	TA05965	NC_011129.2	805475	807289	R	Tap349e08.q2ks7.cand.80 - score = 27.22; 11 probable transmembrane helices predicted for TA05965 by TMHMM2.0 at aa 19-41, 222-244, 251-273, 283-305, 317-339, 373-395, 408-430, 462-484, 504-526, 536-558 and 579-601; Signal anchor predicted for TA05965 by SignalP 2.0 HMM (Signal peptide probability 0.161, signal anchor probability 0.704) with cleavage site probability 0.058 between residues 31 and 32; Tpr-related protein family member, putative	complement(805475..807289)	Theileria annulata	3864296
TA05960	CDS	TA05960	NC_011129.2	807545	809257	R	Tap349e08.q2ks7.cand.79 - score = 24.56; 10 probable transmembrane helices predicted for TA05960 by TMHMM2.0 at aa 20-42, 115-137, 152-171, 178-200, 220-242, 349-371, 381-398, 464-486, 506-528 and 535-557; Tpr-related protein family member, putative	complement(807545..809257)	Theileria annulata	3864295
TA05955	CDS	TA05955	NC_011129.2	809491	810389	R	Tap349e08.q2ks7.cand.78 - score = 24.24; 1 probable transmembrane helix predicted for TA05955 by TMHMM2.0 at aa 199-221; uncharacterized protein	complement(join(809491..809659,809732..809838,809869..809934,809966..810185,810226..810288,810346..810389))	Theileria annulata	3864294
TA05950	CDS	TA05950	NC_011129.2	810519	812220	R	Tap349e08.q2ks7.cand.77 - score = 45.27; 26S proteasome subunit 4, putative	complement(join(810519..810960,811029..811224,811319..811772,811849..811925,812008..812121,812187..812220))	Theileria annulata	3864293
TA05945	CDS	TA05945	NC_011129.2	812451	813341	R	Tap349e08.q2ks7.cand.76 - score = 29.99; ubiquitin-conjugating enzyme E2 (RUB1)	complement(join(812451..812690,812720..812958,813071..813341))	Theileria annulata	3864292
TA05940	CDS	TA05940	NC_011129.2	813495	814145	R	Tap349e08.q2ks7.cand.76 - score = 29.99; uncharacterized protein	complement(join(813495..813605,813640..813685,813731..814055,814103..814145))	Theileria annulata	3864291
TA05935	CDS	TA05935	NC_011129.2	814746	817297	D	Tap349e08.q2ks7.C.cand.55 - score = 43.26; 5'-3' exoribonuclease (XRN2, DHM1)	join(814746..814799,814828..814955,815005..815050,815080..815161,815225..815319,815370..815525,815559..815704,815750..815864,815917..816100,816144..816226,816256..816382,816409..816563,816619..816767,816900..817055,817114..817297)	Theileria annulata	3864290
TA05930	CDS	TA05930	NC_011129.2	817494	821541	D	Tap349e08.q2ks7.C.cand.56 - score = 85.88; 2 probable transmembrane helices predicted for TA05930 by TMHMM2.0 at aa 599-621 and 634-656; uncharacterized protein	join(817494..817593,817624..817739,818022..818318,818393..818526,818556..818709,818757..818864,818897..818943,818974..819790,819832..819988,820020..820076,820142..820899,820978..821078,821109..821193,821226..821309,821339..821388,821442..821541)	Theileria annulata	3864289
TA05920	CDS	TA05920	NC_011129.2	821598	822153	D	Tap349e08.q2ks7.C.cand.57 - score = 53.10; uncharacterized protein	join(821598..821733,821771..822153)	Theileria annulata	3864287
TA05915	CDS	TA05915	NC_011129.2	822241	824516	D	Tap349e08.q2ks7.C.cand.57 - score = 53.10; oxidoreductase, putative	join(822241..824002,824080..824279,824331..824516)	Theileria annulata	3864286
TA05910	CDS	TA05910	NC_011129.2	824654	827860	R	uncharacterized protein	complement(824654..827860)	Theileria annulata	3864285
TA05905	CDS	TA05905	NC_011129.2	827989	831342	R	Tap349e08.q2ks7.cand.75 - score = 145.41; uncharacterized protein	complement(join(827989..828400,828466..828607,828675..828768,828840..829395,829480..831161,831193..831342))	Theileria annulata	3864284
TA05900	CDS	TA05900	NC_011129.2	831798	841681	D	Tap349e08.q2ks7.C.cand.58 - score = 152.53; dynein heavy chain, putative	join(831798..833927,833960..841681)	Theileria annulata	3864283
TA05895	CDS	TA05895	NC_011129.2	841791	842061	R	Tap349e08.q2ks7.cand.74 - score = 9.81; uncharacterized protein	complement(join(841791..841939,841971..842061))	Theileria annulata	3864282
TA05890	CDS	TA05890	NC_011129.2	842277	845185	D	Tap349e08.q2ks7.C.cand.59 - score = 71.63; adapter-related protein, putative	join(842277..842351,842384..843398,843711..843760,843807..843981,844048..844129,844159..844243,844275..844349,844378..844443,844472..844924,844953..845011,845041..845185)	Theileria annulata	3864281
TA05885	CDS	TA05885	NC_011129.2	845202	846281	R	Tap349e08.q2ks7.cand.73 - score = 23.86; ribosomal RNA methyltransferase (FtsJ)	complement(845202..846281)	Theileria annulata	3864280
TA05880	CDS	TA05880	NC_011129.2	846472	847570	R	Tap349e08.q2ks7.cand.71 - score = 25.48; uncharacterized protein	complement(join(846472..846543,846558..846632,846664..846758,846789..847076,847111..847211,847244..847302,847334..847570))	Theileria annulata	3864279
TA05875	CDS	TA05875	NC_011129.2	847676	849376	R	Tap349e08.q2ks7.cand.70 - score = 42.45; nonsense-mediated mRNA decay protein (NMD3)	complement(join(847676..847796,847827..847960,847992..848720,848752..849094,849165..849376))	Theileria annulata	3864278
TA05865	CDS	TA05865	NC_011129.2	850109	851661	D	Tap349e08.q2ks7.C.cand.60 - score = 49.20; RNA binding protein, putative	join(850109..850162,850195..850268,850427..850598,850629..850734,850764..850915,850947..851135,851165..851218,851248..851358,851389..851481,851514..851576,851608..851661)	Theileria annulata	3864276
TA05860	CDS	TA05860	NC_011129.2	851783	852944	R	Tap349e08.q2ks7.cand.68 - score = 143.15; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05860 by SignalP 2.0 HMM (Signal peptide probability 0.923, signal anchor probability 0.069) with cleavage site probability 0.589 between residues 20 and 21; uncharacterized protein	complement(join(851783..852178,852208..852261,852323..852482,852517..852944))	Theileria annulata	3864275
TA05855	CDS	TA05855	NC_011129.2	853239	856899	R	Tap349e08.q2ks7.cand.68 - score = 143.15; 1 probable transmembrane helix predicted for TA05855 by TMHMM2.0 at aa 210-232; uncharacterized protein	complement(join(853239..853487,853519..853630,853663..854032,854063..854230,854260..854365,854395..854491,854524..854618,854650..855027,855080..855999,856034..856717,856824..856899))	Theileria annulata	3864274
TA05850	CDS	TA05850	NC_011129.2	857097	858257	R	Tap349e08.q2ks7.cand.68 - score = 143.15; uncharacterized protein	complement(857097..858257)	Theileria annulata	3864273
TA05845	CDS	TA05845	NC_011129.2	858963	861127	D	Tap349e08.q2ks7.C.cand.61 - score = 59.45; DEAD-box family helicase, putative	join(858963..859412,859443..859884,859915..860027,860056..860306,860336..860660,860694..860794,860824..861127)	Theileria annulata	3864272
TA05840	CDS	TA05840	NC_011129.2	861192	862082	R	uncharacterized protein	complement(861192..862082)	Theileria annulata	3864271
TA05835	CDS	TA05835	NC_011129.2	862184	865429	R	Tap349e08.q2ks7.cand.66 - score = 100.80; phosphatidylinositol 4-kinase, putative	complement(join(862184..864617,864646..864991,865024..865429))	Theileria annulata	3864270
TA05830	CDS	TA05830	NC_011129.2	865881	866495	D	Tap349e08.q2ks7.C.cand.62 - score = 16.00; uncharacterized protein	join(865881..866013,866045..866126,866164..866199,866234..866287,866317..866383,866415..866495)	Theileria annulata	3864269
TA05825	CDS	TA05825	NC_011129.2	866563	868653	R	Tap349e08.q2ks7.cand.65 - score = 53.35; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05825 by SignalP 2.0 HMM (Signal peptide probability 0.802, signal anchor probability 0.002) with cleavage site probability 0.480 between residues 26 and 27; asparaginyl-tRNA synthetase (chloroplast/mitochondrial precursor), putative	complement(join(866563..866695,866727..866768,866798..866917,866951..867099,867133..867345,867375..867437,867483..867593,867623..867682,867711..867782,867812..868356,868389..868653))	Theileria annulata	3863567
TA05820	CDS	TA05820	NC_011129.2	868951	870183	R	Tap349e08.q2ks7.cand.64 - score = 15.14; 9 probable transmembrane helices predicted for TA05820 by TMHMM2.0 at aa 13-35, 45-67, 100-122, 132-151, 206-223, 228-247, 289-311, 361-383 and 390-409; Signal anchor predicted for TA05820 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.976) with cleavage site probability 0.008 between residues 23 and 24; uncharacterized protein	complement(868951..870183)	Theileria annulata	3863566
TA05810	CDS	TA05810	NC_011129.2	870415	871171	R	Tap349e08.q2ks7.cand.63 - score = 18.47; uncharacterized protein	complement(join(870415..870556,870587..870652,870698..870819,870857..871171))	Theileria annulata	3863564
TA05805	CDS	TA05805	NC_011129.2	871951	874187	D	Tap349e08.q2ks7.C.cand.64 - score = 72.48; cyclophilin peptidyl-prolyl cis-trans isomerase protein, putative	join(871951..871999,872036..872074,872106..872195,872230..872346,872378..872561,872591..872837,872871..873215,873266..873358,873400..873479,873529..873629,873660..873872,873904..874187)	Theileria annulata	3863563
TA05800	CDS	TA05800	NC_011129.2	875077	876584	D	Tap349e08.q2ks7.C.cand.65 - score = 43.61; uncharacterized protein	join(875077..875971,876049..876584)	Theileria annulata	3863562
TA05795	CDS	TA05795	NC_011129.2	876925	878105	D	Tap349e08.q2ks7.C.cand.66 - score = 42.92; uncharacterized protein	join(876925..876997,877053..877123,877161..877229,877260..878105)	Theileria annulata	3863561
TA05790	CDS	TA05790	NC_011129.2	879701	880802	D	Tap349e08.q2ks7.C.cand.67 - score = 38.92; ADP-ribosylation factor GTPase-activating protein, putative	join(879701..879849,879884..880385,880416..880541,880575..880802)	Theileria annulata	3863560
TA05785	CDS	TA05785	NC_011129.2	881234	887483	D	Tap349e08.q2ks7.C.cand.68 - score = 154.07; DNA-directed RNA polymerase I, putative	join(881234..881533,881564..881699,881729..883707,883751..886637,886692..886779,886809..887155,887221..887483)	Theileria annulata	3863559
TA05780	CDS	TA05780	NC_011129.2	887562	889784	R	Tap349e08.q2ks7.cand.62 - score = 41.69; 9 probable transmembrane helices predicted for TA05780 by TMHMM2.0 at aa 375-397, 404-426, 441-458, 467-489, 509-531, 544-566, 595-617, 638-660 and 670-692; Tpr-related protein family member, putative	complement(887562..889784)	Theileria annulata	3863558
TA05775	CDS	TA05775	NC_011129.2	889907	891889	R	Tap349e08.q2ks7.cand.61 - score = 24.15; 11 probable transmembrane helices predicted for TA05775 by TMHMM2.0 at aa 20-42, 153-175, 185-207, 214-236, 251-273, 411-433, 448-467, 523-545, 565-587, 594-613 and 633-652; Signal anchor predicted for TA05775 by SignalP 2.0 HMM (Signal peptide probability 0.040, signal anchor probability 0.680) with cleavage site probability 0.015 between residues 32 and 33; Tpr-related protein family member, putative	complement(889907..891889)	Theileria annulata	3863557
TA05770	CDS	TA05770	NC_011129.2	892105	894243	R	Tap349e08.q2ks7.cand.60 - score = 31.38; 9 probable transmembrane helices predicted for TA05770 by TMHMM2.0 at aa 10-28, 83-105, 115-137, 144-166, 181-203, 278-300, 595-617, 638-660 and 665-687; Tpr-related protein family member, putative	complement(892105..894243)	Theileria annulata	3863556
TA05765	CDS	TA05765	NC_011129.2	894500	897832	R	Tap349e08.q2ks7.cand.59 - score = 71.88; ubiquitination-mediated degradation component, putative	complement(894500..897832)	Theileria annulata	3863555
TA05755	CDS	TA05755	NC_011129.2	898094	901342	R	Tap349e08.q2ks7.cand.58 - score = 27.15; 11 probable transmembrane helices predicted for TA05755 by TMHMM2.0 at aa 9-28, 43-65, 72-91, 96-118, 125-147, 162-181, 249-271, 281-300, 307-329, 339-361 and 768-790; uncharacterized protein	complement(898094..901342)	Theileria annulata	3863553
TA05750	CDS	TA05750	NC_011129.2	901808	902115	D	Tap349e08.q2ks7.C.cand.69 - score = 10.97; Signal peptide predicted for TA05750 by SignalP 2.0 HMM (Signal peptide probability 0.605, signal anchor probability 0.000) with cleavage site probability 0.591 between residues 21 and 22; (U6) snRNA-associated Sm-like protein, putative	join(901808..901948,901984..902115)	Theileria annulata	3863552
TA05745	CDS	TA05745	NC_011129.2	902123	905190	R	Tap349e08.q2ks7.cand.57 - score = 94.86; recombinational repair (RAD54) protein	complement(join(902123..902215,902247..902452,902483..902726,902761..902853,902883..903017,903052..903324,903355..903466,903499..903563,903597..903698,903734..903787,903817..903903,903935..904023,904055..904151,904182..904444,904476..904579,904611..904818,904856..904974,905007..905045,905153..905190))	Theileria annulata	3863551
TA05740	CDS	TA05740	NC_011129.2	905445	906159	R	Tap349e08.q2ks7.cand.56 - score = 20.82; ubiquitin-conjugating enzyme, putative	complement(join(905445..905587,905625..905753,905787..905954,905989..906068,906110..906159))	Theileria annulata	3863550
TA05735	CDS	TA05735	NC_011129.2	906948	908534	R	Tap349e08.q2ks7.cand.55 - score = 36.33; Signal peptide predicted for TA05735 by SignalP 2.0 HMM (Signal peptide probability 0.799, signal anchor probability 0.000) with cleavage site probability 0.444 between residues 20 and 21; aspartyl protease, putative	complement(join(906948..907028,907066..907098,907131..907234,907264..907363,907397..907422,907455..907478,907510..907646,907678..907741,907772..907949,907980..908534))	Theileria annulata	3863549
TA05730	CDS	TA05730	NC_011129.2	908892	909944	D	Tap349e08.q2ks7.C.cand.70 - score = 74.90; uncharacterized protein	join(908892..909223,909256..909367,909396..909544,909574..909672,909702..909761,909791..909944)	Theileria annulata	3863548
TA05725	CDS	TA05725	NC_011129.2	910210	912201	D	Tap349e08.q2ks7.C.cand.70 - score = 74.90; uncharacterized protein	join(910210..910824,910854..910934,911026..912201)	Theileria annulata	3863925
TA05720	CDS	TA05720	NC_011129.2	912272	912547	R	Tap349e08.q2ks7.cand.54 - score = 17.27; mitochondrial import inner membrane translocase subunit (TIM9)	complement(912272..912547)	Theileria annulata	3863924
TA05715	CDS	TA05715	NC_011129.2	912839	913910	R	Tap349e08.q2ks7.cand.54 - score = 17.27; 6 probable transmembrane helices predicted for TA05715 by TMHMM2.0 at aa 21-43, 63-85, 128-150, 160-182, 189-206 and 250-272; uncharacterized protein	complement(join(912839..913052,913175..913244,913279..913392,913427..913616,913646..913833,913865..913910))	Theileria annulata	3863923
TA05710	CDS	TA05710	NC_011129.2	915660	919266	R	Tap349e08.q2ks7.cand.53 - score = 119.95; pre-mRNA splicing factor (U5 snRNP-associated), putative	complement(join(915660..915919,915952..916108,916173..916600,916635..916815,916892..917122,917154..917369,917401..917535,917569..917898,917982..918248,918277..918653,918684..918742,918773..919066,919097..919150,919187..919266))	Theileria annulata	3863922
TA05700	CDS	TA05700	NC_011129.2	919808	921763	R	3 probable transmembrane helices predicted for TA05700 by TMHMM2.0 at aa 368-390, 545-567 and 572-591; uncharacterized protein	complement(join(919808..920458,920527..920584,920673..921763))	Theileria annulata	3863920
TA05695	CDS	TA05695	NC_011129.2	922006	924805	D	vacuolar sorting protein 35	join(922006..922125,922237..923032,923063..923151,923181..923765,923825..924112,924161..924707,924738..924805)	Theileria annulata	3863919
TA05690	CDS	TA05690	NC_011129.2	925812	928002	R	Tap349e08.q2ks7.cand.51 - score = 37.99; 4 probable transmembrane helices predicted for TA05690 by TMHMM2.0 at aa 26-48, 61-83, 98-116 and 168-190; uncharacterized protein	complement(join(925812..925939,925968..926052,926082..926210,926288..926806,926869..926934,926968..927064,927115..927326,927357..927459,927534..927675,927716..927814,927849..928002))	Theileria annulata	3863918
TA05685	CDS	TA05685	NC_011129.2	928170	929500	R	Tap349e08.q2ks7.cand.50 - score = 27.17; uncharacterized protein	complement(join(928170..928385,928456..929051,929083..929500))	Theileria annulata	3863917
TA05680	CDS	TA05680	NC_011129.2	929706	931136	D	Tap349e08.q2ks7.C.cand.74 - score = 35.57; uncharacterized protein	929706..931136	Theileria annulata	3863916
TA05675	CDS	TA05675	NC_011129.2	931211	932362	R	Tap349e08.q2ks7.cand.49 - score = 24.27; actin, putative	complement(931211..932362)	Theileria annulata	3863915
TA05670	CDS	TA05670	NC_011129.2	932729	933340	D	Tap349e08.q2ks7.C.cand.75 - score = 13.36; ribosomal protein L11, putative	join(932729..932913,932958..933078,933113..933340)	Theileria annulata	3863914
TA05665	CDS	TA05665	NC_011129.2	933610	935231	D	Tap349e08.q2ks7.C.cand.76 - score = 31.76; uncharacterized protein	join(933610..933719,933752..934014,934052..934157,934336..934460,934535..934975,935005..935231)	Theileria annulata	3863913
TA05660	CDS	TA05660	NC_011129.2	935302	936749	R	Tap349e08.q2ks7.cand.48 - score = 23.90; 4 probable transmembrane helices predicted for TA05660 by TMHMM2.0 at aa 310-332, 337-359, 366-388 and 398-420; uncharacterized protein	complement(join(935302..936590,936656..936749))	Theileria annulata	3863912
TA05655	CDS	TA05655	NC_011129.2	937008	938033	R	Tap349e08.q2ks7.cand.47 - score = 34.95; uncharacterized protein	complement(join(937008..937098,937129..937229,937260..937427,937462..937536,937569..937654,937683..937724,937756..937925,937969..938033))	Theileria annulata	3863911
TA07020	CDS	TA07020	NC_011129.2	938139	939166	D	Tap349e08.q2ks7.C.cand.77 - score = 26.51; phosphomannomutase, putative	join(938139..938201,938232..938346,938377..938453,938483..938574,938605..938748,938810..938879,938949..939026,939059..939166)	Theileria annulata	3864506
TA07015	CDS	TA07015	NC_011129.2	939212	940954	R	Tap349e08.q2ks7.cand.46 - score = 44.19; uncharacterized protein	complement(join(939212..940027,940103..940954))	Theileria annulata	3864505
TA07010	CDS	TA07010	NC_011129.2	941268	941779	R	Tap349e08.q2ks7.cand.45 - score = 10.20; uncharacterized protein	complement(join(941268..941362,941458..941519,941589..941779))	Theileria annulata	3864504
TA07005	CDS	TA07005	NC_011129.2	942135	943844	D	Tap349e08.q2ks7.C.cand.78 - score = 27.30; uncharacterized protein	join(942135..942281,942350..942498,942588..942742,942793..942914,943006..943144,943214..943330,943361..943611,943698..943844)	Theileria annulata	3864189
TA07000	CDS	TA07000	NC_011129.2	944621	946036	D	Tap349e08.q2ks7.C.cand.79 - score = 36.66; cyclin-dependent kinase CRK3 (CDK7)	join(944621..944946,944998..945749,945848..945924,945956..946036)	Theileria annulata	3864188
TA06995	CDS	TA06995	NC_011129.2	946098	950127	R	Tap349e08.q2ks7.cand.44 - score = 73.06; transcriptional adaptor (ADA2)	complement(join(946098..947728,947980..948406,948447..948590,948645..948864,948954..949176,949247..949337,949371..949478,949531..950127))	Theileria annulata	3864187
TA06990	CDS	TA06990	NC_011129.2	950769	953331	D	Tap349e08.q2ks7.C.cand.80 - score = 119.92; uncharacterized protein	join(950769..951941,951970..951978,952013..952630,952661..952948,953005..953112,953187..953229,953264..953331)	Theileria annulata	3864186
TA06985	CDS	TA06985	NC_011129.2	953364	956265	D	Tap349e08.q2ks7.C.cand.80 - score = 119.92; uncharacterized protein	join(953364..953523,953554..954599,954667..954805,954845..955073,955134..955707,955769..956175,956205..956265)	Theileria annulata	3864185
TA06980	CDS	TA06980	NC_011129.2	957073	958587	R	Tap349e08.q2ks7.cand.43 - score = 18.61; 10 probable transmembrane helices predicted for TA06980 by TMHMM2.0 at aa 26-48, 113-135, 147-169, 184-201, 213-235, 255-277, 289-311, 355-377, 398-420 and 424-446; Tpr-related protein family member, putative	complement(957073..958587)	Theileria annulata	3864184
TA06975	CDS	TA06975	NC_011129.2	958790	961042	R	Tap349e08.q2ks7.cand.42 - score = 54.93; 10 probable transmembrane helices predicted for TA06975 by TMHMM2.0 at aa 21-43, 376-398, 405-427, 437-459, 471-493, 534-556, 563-585, 625-647, 667-689 and 693-715; Tpr-related protein family member, putative	complement(958790..961042)	Theileria annulata	3864183
TA06970	CDS	TA06970	NC_011129.2	961240	962685	R	Tap349e08.q2ks7.cand.42 - score = 54.93; 11 probable transmembrane helices predicted for TA06970 by TMHMM2.0 at aa 20-42, 68-90, 110-132, 144-166, 170-192, 213-235, 268-290, 297-316, 354-376, 397-419 and 429-451; Tpr-related protein family member, putative	complement(961240..962685)	Theileria annulata	3864182
TA06965	CDS	TA06965	NC_011129.2	962984	965991	R	Tap349e08.q2ks7.cand.41 - score = 47.16; 1-phosphatidylinositol-4,5-bisphosphatephosphod ie sterase	complement(join(962984..965277,965361..965991))	Theileria annulata	3864181
TA06960	CDS	TA06960	NC_011129.2	966629	973574	D	myosin, putative	join(966629..966746,966964..967028,967581..968942,969153..969398,969446..969660,970077..970570,970659..970967,971037..971095,971425..971722,971796..971924,972044..972380,972414..972735,972836..972957,973313..973574)	Theileria annulata	3864180
TA06955	CDS	TA06955	NC_011129.2	973702	975354	R	Tap349e08.q2ks7.cand.40 - score = 22.63; 9 probable transmembrane helices predicted for TA06955 by TMHMM2.0 at aa 19-41, 138-160, 170-192, 232-254, 292-314, 334-356, 417-439, 459-481 and 491-513; Tpr-related protein family member, putative	complement(973702..975354)	Theileria annulata	3864179
TA06950	CDS	TA06950	NC_011129.2	975546	976937	R	Tap349e08.q2ks7.cand.39 - score = 21.45; chromatin assembly factor subunit, putative	complement(975546..976937)	Theileria annulata	3864178
TA06945	CDS	TA06945	NC_011129.2	977210	977797	R	Tap349e08.q2ks7.cand.38 - score = 9.65; 2 probable transmembrane helices predicted for TA06945 by TMHMM2.0 at aa 15-37 and 58-77; Signal anchor predicted for TA06945 by SignalP 2.0 HMM (Signal peptide probability 0.007, signal anchor probability 0.925) with cleavage site probability 0.004 between residues 33 and 34; uncharacterized protein	complement(977210..977797)	Theileria annulata	3864177
TA06940	CDS	TA06940	NC_011129.2	978189	980465	D	Tap349e08.q2ks7.C.cand.82 - score = 41.60; GPI-Anchor Signal predicted for TA06940 by DGPI v2.04 with cleavage site probability 0.10399999 near 736; uncharacterized protein	978189..980465	Theileria annulata	3864176
TA06935	CDS	TA06935	NC_011129.2	980580	981179	R	Tap349e08.q2ks7.cand.37 - score = 12.70; uncharacterized protein	complement(join(980580..980899,981026..981179))	Theileria annulata	3864175
TA06930	CDS	TA06930	NC_011129.2	981583	982225	R	Tap349e08.q2ks7.cand.36 - score = 11.49; uncharacterized protein	complement(join(981583..981712,981902..981974,982006..982225))	Theileria annulata	3864174
TA06925	CDS	TA06925	NC_011129.2	982408	984217	R	Tap349e08.q2ks7.cand.35 - score = 34.68; uncharacterized protein	complement(join(982408..982601,982632..982705,982770..983470,983500..983755,983805..984217))	Theileria annulata	3864173
TA06920	CDS	TA06920	NC_011129.2	984505	985885	D	Tap349e08.q2ks7.C.cand.83 - score = 33.70; eukaryotic translation initiation factor, putative	join(984505..984861,984954..985580,985649..985759,985796..985885)	Theileria annulata	3864172
TA06915	CDS	TA06915	NC_011129.2	986013	987335	D	Tap349e08.q2ks7.C.cand.84 - score = 30.29; uncharacterized protein	986013..987335	Theileria annulata	3864171
TA06910	CDS	TA06910	NC_011129.2	987393	987884	R	Tap349e08.q2ks7.cand.34 - score = 9.50; clathrin assembly protein, putative	complement(join(987393..987648,987703..987884))	Theileria annulata	3864170
TA06905	CDS	TA06905	NC_011129.2	988146	990740	D	Tap349e08.q2ks7.C.cand.85 - score = 51.51; uncharacterized protein	join(988146..988476,988513..988574,988617..990740)	Theileria annulata	3863772
TA06900	CDS	TA06900	NC_011129.2	990940	993207	D	Tap349e08.q2ks7.C.cand.86 - score = 38.10; 11 probable transmembrane helices predicted for TA06900 by TMHMM2.0 at aa 29-51, 119-141, 151-173, 180-202, 217-239, 510-532, 547-564, 617-639, 659-681, 688-710 and 725-747; Tpr-related protein family member, putative	990940..993207	Theileria annulata	3863771
TA06895	CDS	TA06895	NC_011129.2	993322	994827	D	Tap349e08.q2ks7.C.cand.87 - score = 17.31; 10 probable transmembrane helices predicted for TA06895 by TMHMM2.0 at aa 24-46, 128-150, 163-185, 189-211, 232-254, 278-300, 313-335, 360-382, 402-421 and 431-453; Tpr-related protein family member, putative	993322..994827	Theileria annulata	3863770
TA06890	CDS	TA06890	NC_011129.2	994895	996151	R	Tap349e08.q2ks7.cand.33 - score = 23.32; 6 probable transmembrane helices predicted for TA06890 by TMHMM2.0 at aa 80-102, 112-134, 154-176, 196-218, 231-250 and 254-276; uncharacterized protein	complement(join(994895..995648,995724..996151))	Theileria annulata	3863769
TA06885	CDS	TA06885	NC_011129.2	997386	999071	D	Tap349e08.q2ks7.C.cand.88 - score = 38.12; tyrosyl-tRNA synthetase, putative	join(997386..997497,997528..998211,998244..998551,998583..998789,998820..999071)	Theileria annulata	3863768
TA06880	CDS	TA06880	NC_011129.2	999156	1000460	R	Tap349e08.q2ks7.cand.32 - score = 18.33; 10 probable transmembrane helices predicted for TA06880 by TMHMM2.0 at aa 13-35, 50-72, 84-106, 116-138, 181-203, 223-245, 258-280, 304-326, 345-367 and 377-399; Tpr-related protein family member, putative	complement(999156..1000460)	Theileria annulata	3863767
TA06875	CDS	TA06875	NC_011129.2	1000633	1004501	R	Tap349e08.q2ks7.cand.31 - score = 77.81; 9 probable transmembrane helices predicted for TA06875 by TMHMM2.0 at aa 387-409, 413-435, 512-534, 549-571, 813-830, 845-867, 888-910, 925-944 and 1066-1088; Signal peptide predicted for TA06875 by SignalP 2.0 HMM (Signal peptide probability 0.892, signal anchor probability 0.103) with cleavage site probability 0.851 between residues 30 and 31; uncharacterized protein	complement(join(1000633..1000849,1000879..1001142,1001201..1001300,1001333..1001726,1001756..1002215,1002253..1002746,1002779..1002874,1002939..1003253,1003283..1003408,1003448..1003576,1003607..1003707,1003769..1003983,1004065..1004501))	Theileria annulata	3863766
TA06870	CDS	TA06870	NC_011129.2	1005091	1007718	D	Tap349e08.q2ks7.C.cand.89 - score = 58.81; uncharacterized protein	join(1005091..1005213,1005255..1005342,1005384..1005586,1005618..1005746,1005776..1006034,1006090..1006299,1006360..1006463,1006514..1006605,1006666..1006864,1006931..1007038,1007076..1007369,1007437..1007718)	Theileria annulata	3863765
TA06865	CDS	TA06865	NC_011129.2	1008419	1009150	D	Tap349e08.q2ks7.C.cand.90 - score = 20.89; small GTP-binding protein (RAN subfamily), putative	join(1008419..1008530,1008627..1009150)	Theileria annulata	3863764
TA06860	CDS	TA06860	NC_011129.2	1009270	1012353	R	Tap349e08.q2ks7.cand.30 - score = 71.90; DNA mismatch repair (MLH1)	complement(join(1009270..1009429,1009501..1009679,1009712..1009899,1009943..1010118,1010160..1010791,1010856..1010945,1010980..1011154,1011201..1012254,1012293..1012353))	Theileria annulata	3863763
TA06855	CDS	TA06855	NC_011129.2	1013005	1015042	D	Tap349e08.q2ks7.C.cand.91 - score = 56.48; uncharacterized protein	join(1013005..1013052,1013086..1014139,1014171..1015042)	Theileria annulata	3863762
TA06850	CDS	TA06850	NC_011129.2	1015184	1015725	D	Tap349e08.q2ks7.C.cand.92 - score = 15.60; clathrin assembly protein, putative	join(1015184..1015365,1015419..1015563,1015594..1015725)	Theileria annulata	3863761
TA06845	CDS	TA06845	NC_011129.2	1015811	1018398	R	Tap349e08.q2ks7.cand.29 - score = 75.16; heat-shock protein, putative	complement(join(1015811..1016093,1016126..1016382,1016414..1016515,1016557..1016662,1016748..1016872,1016925..1017108,1017149..1017532,1017575..1018101,1018131..1018175,1018231..1018398))	Theileria annulata	3863760
TA06840	CDS	TA06840	NC_011129.2	1018717	1021937	D	Tap349e08.q2ks7.C.cand.93 - score = 73.97; uncharacterized protein	join(1018717..1021010,1021070..1021539,1021628..1021743,1021827..1021937)	Theileria annulata	3863759
TA06835	CDS	TA06835	NC_011129.2	1022512	1024164	D	Tap349e08.q2ks7.C.cand.94 - score = 35.66; histone acetyltransferase, putative	join(1022512..1022670,1022729..1022817,1022848..1023041,1023083..1023326,1023395..1023499,1023532..1023877,1023943..1024164)	Theileria annulata	3863758
TA06830	CDS	TA06830	NC_011129.2	1024238	1024814	R	Tap349e08.q2ks7.cand.28 - score = 20.09; uncharacterized protein	complement(join(1024238..1024537,1024569..1024814))	Theileria annulata	3863757
TA06825	CDS	TA06825	NC_011129.2	1024942	1026612	R	Tap349e08.q2ks7.cand.27 - score = 49.72; ribonucleolar protein, putative	complement(1024942..1026612)	Theileria annulata	3863756
TA06820	CDS	TA06820	NC_011129.2	1027331	1029042	D	uncharacterized protein	join(1027331..1027514,1027547..1027774,1027808..1027993,1028024..1028179,1028212..1028633,1028666..1028793,1028834..1028921,1028962..1029042)	Theileria annulata	3863755
TA06815	CDS	TA06815	NC_011129.2	1029167	1030151	D	Tap349e08.q2ks7.C.cand.97 - score = 21.22; uncharacterized protein	join(1029167..1029335,1029399..1029474,1029533..1029644,1029816..1029828,1029858..1029924,1029954..1029991,1030030..1030151)	Theileria annulata	3863754
TA06810	CDS	TA06810	NC_011129.2	1030218	1031218	R	Tap349e08.q2ks7.cand.26 - score = 26.03; Signal peptide predicted for TA06810 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.055) with cleavage site probability 0.860 between residues 21 and 22; uncharacterized protein	complement(join(1030218..1030349,1030403..1030494,1030526..1030570,1030628..1030728,1030757..1030806,1030838..1030895,1030929..1031218))	Theileria annulata	3864015
TA06805	CDS	TA06805	NC_011129.2	1031624	1032355	D	Tap349e08.q2ks7.C.cand.98 - score = 19.12; uncharacterized protein	join(1031624..1031903,1031935..1032027,1032059..1032091,1032121..1032166,1032196..1032355)	Theileria annulata	3864014
TA06800	CDS	TA06800	NC_011129.2	1032789	1033111	R	Tap349e08.q2ks7.cand.25 - score = 6.99; uncharacterized protein	complement(join(1032789..1032929,1032965..1033111))	Theileria annulata	3864013
TA06795	CDS	TA06795	NC_011129.2	1033159	1036122	R	Tap349e08.q2ks7.cand.24 - score = 65.93; uncharacterized protein	complement(1033159..1036122)	Theileria annulata	3864012
TA06790	CDS	TA06790	NC_011129.2	1036871	1038929	D	Tap349e08.q2ks7.C.cand.99 - score = 82.63; disrupter of silencing (SAS10)	join(1036871..1037015,1037077..1037145,1037175..1037452,1037483..1037719,1037751..1037961,1037993..1038111,1038141..1038255,1038294..1038689,1038721..1038929)	Theileria annulata	3864011
TA06785	CDS	TA06785	NC_011129.2	1039034	1041298	D	Tap349e08.q2ks7.C.cand.100 - score = 76.63; uncharacterized protein	1039034..1041298	Theileria annulata	3864010
TA06780	CDS	TA06780	NC_011129.2	1041347	1042678	D	Tap349e08.q2ks7.C.cand.100 - score = 76.63; uncharacterized protein	join(1041347..1041547,1041579..1041650,1041681..1041801,1041834..1042244,1042275..1042489,1042520..1042678)	Theileria annulata	3864009
TA06775	CDS	TA06775	NC_011129.2	1042746	1044615	R	Tap349e08.q2ks7.cand.23 - score = 71.78; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA06775 by SignalP 2.0 HMM (Signal peptide probability 0.967, signal anchor probability 0.002) with cleavage site probability 0.848 between residues 19 and 20; uncharacterized protein	complement(join(1042746..1043132,1043164..1044453,1044484..1044615))	Theileria annulata	3864008
TA06770	CDS	TA06770	NC_011129.2	1045217	1045938	R	Tap349e08.q2ks7.cand.22 - score = 22.20; uncharacterized protein	complement(join(1045217..1045408,1045445..1045546,1045586..1045618,1045651..1045938))	Theileria annulata	3864007
TA06765	CDS	TA06765	NC_011129.2	1046218	1047205	D	Tap349e08.q2ks7.C.cand.101 - score = 24.57; uncharacterized protein	join(1046218..1046329,1046367..1046602,1046638..1046994,1047026..1047205)	Theileria annulata	3864006
TA06760	CDS	TA06760	NC_011129.2	1047453	1048069	R	Tap349e08.q2ks7.cand.21 - score = 16.44; mitochondrial inner membrane protein, putative	complement(join(1047453..1047796,1047852..1047911,1047946..1048069))	Theileria annulata	3864005
TA06755	CDS	TA06755	NC_011129.2	1048203	1049026	R	Tap349e08.q2ks7.cand.20 - score = 36.25; ubiquitin conjugating enzyme, putative	complement(join(1048203..1048265,1048301..1048345,1048375..1048426,1048456..1048525,1048555..1048705,1048748..1048825,1048855..1048950,1048988..1049026))	Theileria annulata	3864004
TA06750	CDS	TA06750	NC_011129.2	1050242	1054822	D	Tap349e08.q2ks7.C.cand.102 - score = 113.52; uncharacterized protein	1050242..1054822	Theileria annulata	3864003
TA06745	CDS	TA06745	NC_011129.2	1055026	1057029	R	Tap349e08.q2ks7.cand.19 - score = 33.28; 9 probable transmembrane helices predicted for TA06745 by TMHMM2.0 at aa 29-51, 72-94, 99-121, 126-148, 163-185, 253-275, 539-561, 582-604 and 609-631; Tpr-related protein family member, putative	complement(1055026..1057029)	Theileria annulata	3864002
TA06740	CDS	TA06740	NC_011129.2	1057252	1058778	R	Tap349e08.q2ks7.cand.18 - score = 37.58; 11 probable transmembrane helices predicted for TA06740 by TMHMM2.0 at aa 5-27, 47-69, 89-111, 123-145, 150-172, 185-207, 313-335, 348-366, 403-425, 446-468 and 478-500; Signal peptide predicted for TA06740 by SignalP 2.0 HMM (Signal peptide probability 0.770, signal anchor probability 0.004) with cleavage site probability 0.525 between residues 20 and 21; Tpr-related protein family member, putative	complement(1057252..1058778)	Theileria annulata	3864001
TA06735	CDS	TA06735	NC_011129.2	1058998	1060570	R	Tap349e08.q2ks7.cand.18 - score = 37.58; uncharacterized protein	complement(join(1058998..1059036,1059218..1059351,1059386..1060300,1060331..1060384,1060417..1060456,1060490..1060570))	Theileria annulata	3864000
TA06730	CDS	TA06730	NC_011129.2	1062713	1063881	R	Tap349e08.q2ks7.cand.17 - score = 26.30; cdc2-like kinase	complement(join(1062713..1062862,1062895..1063064,1063099..1063232,1063306..1063465,1063570..1063713,1063743..1063881))	Theileria annulata	3863999
TA06725	CDS	TA06725	NC_011129.2	1064185	1066231	R	Tap349e08.q2ks7.cand.16 - score = 39.04; 1 probable transmembrane helix predicted for TA06725 by TMHMM2.0 at aa 7-29; glutamyl-tRNA synthetase, putative	complement(join(1064185..1064323,1064355..1064421,1064486..1064817,1064848..1064916,1064949..1065083,1065144..1065287,1065342..1065448,1065516..1065597,1065629..1065712,1065762..1066231))	Theileria annulata	3863998
TA06720	CDS	TA06720	NC_011129.2	1067084	1068430	D	Tap349e08.q2ks7.C.cand.103 - score = 43.43; elongation factor 1 alpha, putative	1067084..1068430	Theileria annulata	3863997
TA06715	CDS	TA06715	NC_011129.2	1068641	1069982	D	Tap349e08.q2ks7.C.cand.104 - score = 80.26; 1 probable transmembrane helix predicted for TA06715 by TMHMM2.0 at aa 184-206; ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain, putative	join(1068641..1068721,1068976..1069145,1069175..1069478,1069538..1069814,1069846..1069982)	Theileria annulata	3863996
TA06710	CDS	TA06710	NC_011129.2	1070191	1073004	D	Tap349e08.q2ks7.C.cand.104 - score = 80.26; uncharacterized protein	join(1070191..1071045,1071077..1071655,1071717..1071953,1071982..1072170,1072201..1073004)	Theileria annulata	3863487
TA06705	CDS	TA06705	NC_011129.2	1073039	1073599	R	Tap349e08.q2ks7.cand.15 - score = 7.72; uncharacterized protein	complement(join(1073039..1073220,1073293..1073599))	Theileria annulata	3863486
TA06700	CDS	TA06700	NC_011129.2	1073674	1081790	D	Tap349e08.q2ks7.C.cand.105 - score = 170.39; amine oxidase (flavin-containing)	join(1073674..1076834,1076874..1077061,1077166..1077294,1077419..1080613,1080679..1081790)	Theileria annulata	3863485
TA06695	CDS	TA06695	NC_011129.2	1082075	1084825	D	Tap349e08.q2ks7.C.cand.106 - score = 68.39; DNA replication licensing factor (MCM5)	join(1082075..1082458,1082500..1082825,1082858..1082930,1083001..1083078,1083136..1083301,1083331..1083436,1083468..1083673,1083772..1084171,1084201..1084294,1084346..1084825)	Theileria annulata	3863484
TA06690	CDS	TA06690	NC_011129.2	1085655	1086134	D	Tap349e08.q2ks7.C.cand.107 - score = 12.40; ubiquitin, putative	1085655..1086134	Theileria annulata	3863483
TA06685	CDS	TA06685	NC_011129.2	1086304	1090380	R	Tap349e08.q2ks7.cand.14 - score = 102.53; 7 probable transmembrane helices predicted for TA06685 by TMHMM2.0 at aa 199-221, 228-245, 390-412, 425-447, 1100-1122, 1287-1309 and 1319-1341; cation ATPase, putative	complement(1086304..1090380)	Theileria annulata	3863482
TA06680	CDS	TA06680	NC_011129.2	1090862	1091974	D	Tap349e08.q2ks7.C.cand.109 - score = 26.48; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA06680 by SignalP 2.0 HMM (Signal peptide probability 0.682, signal anchor probability 0.023) with cleavage site probability 0.551 between residues 20 and 21; uncharacterized protein	1090862..1091974	Theileria annulata	3863481
TA06675	CDS	TA06675	NC_011129.2	1092166	1092960	R	Tap349e08.q2ks7.cand.13 - score = 15.80; 1 probable transmembrane helix predicted for TA06675 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA06675 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.005) with cleavage site probability 0.751 between residues 21 and 22; uncharacterized protein	complement(join(1092166..1092333,1092366..1092500,1092608..1092844,1092895..1092960))	Theileria annulata	3863480
TA06670	CDS	TA06670	NC_011129.2	1093083	1094627	D	Tap349e08.q2ks7.C.cand.110 - score = 34.06; uncharacterized protein	1093083..1094627	Theileria annulata	3863479
TA06665	CDS	TA06665	NC_011129.2	1094716	1095373	D	Tap349e08.q2ks7.C.cand.111 - score = 15.90; 30S ribosomal protein S16, putative	join(1094716..1094797,1094832..1095373)	Theileria annulata	3863478
TA06635	CDS	TA06635	NC_011129.2	1095634	1098153	D	Tap349e08.q2ks7.C.cand.112 - score = 41.43; 9 probable transmembrane helices predicted for TA06635 by TMHMM2.0 at aa 20-39, 127-149, 159-181, 223-245, 656-678, 685-702, 735-757, 777-799 and 803-825; Tpr-related protein family member, putative	1095634..1098153	Theileria annulata	3863473
TA06580	CDS	TA06580	NC_011129.2	1098412	1099746	D	Tap349e08.q2ks7.C.cand.113 - score = 16.46; 9 probable transmembrane helices predicted for TA06580 by TMHMM2.0 at aa 20-42, 108-130, 140-162, 202-224, 256-278, 291-309, 337-359, 380-402 and 407-426; Tpr-related protein family member, putative	1098412..1099746	Theileria annulata	3863423
TA06475	CDS	TA06475	NC_011129.2	1099951	1100970	R	Tap349e08.q2ks7.cand.12 - score = 61.65; 4 probable transmembrane helices predicted for TA06475 by TMHMM2.0 at aa 35-57, 129-151, 178-200 and 227-249; GPI-Anchor Signal predicted for TA06475 by DGPI v2.04 with cleavage site probability 0.3306 near 305; sugar transporter, putative	complement(1099951..1100970)	Theileria annulata	3864534
TA06420	CDS	TA06420	NC_011129.2	1101179	1101463	R	2 probable transmembrane helices predicted for TA06420 by TMHMM2.0 at aa 10-32 and 53-75; Signal peptide predicted for TA06420 by SignalP 2.0 HMM (Signal peptide probability 0.732, signal anchor probability 0.124) with cleavage site probability 0.204 between residues 28 and 29; uncharacterized protein	complement(1101179..1101463)	Theileria annulata	3864523
TA06365	CDS	TA06365	NC_011129.2	1101752	1103878	R	uncharacterized protein	complement(join(1101752..1101945,1101976..1102063,1102098..1102246,1102277..1102442,1102476..1102553,1102589..1102686,1102716..1102830,1102873..1102947,1102979..1103150,1103198..1103256,1103328..1103375,1103425..1103523,1103558..1103731,1103762..1103878))	Theileria annulata	3864218
TA06310	CDS	TA06310	NC_011129.2	1104121	1105425	R	Tap349e08.q2ks7.cand.11 - score = 25.91; clathrin-adaptor (medium) chain, putative	complement(1104121..1105425)	Theileria annulata	3863467
TA06255	CDS	TA06255	NC_011129.2	1105866	1107615	R	Tap349e08.q2ks7.cand.10 - score = 43.57; 26S proteasome subunit, putative	complement(join(1105866..1106120,1106181..1106514,1106568..1106778,1106807..1106916,1106948..1107000,1107082..1107260,1107338..1107419,1107532..1107615))	Theileria annulata	3863456
TA06250	CDS	TA06250	NC_011129.2	1107894	1110405	D	Tap349e08.q2ks7.C.cand.114 - score = 51.84; uncharacterized protein	join(1107894..1108032,1108065..1108141,1108172..1109072,1109163..1109356,1109392..1109478,1109509..1110405)	Theileria annulata	3863455
TA06145	CDS	TA06145	NC_011129.2	1110461	1113866	R	Tap349e08.q2ks7.cand.9 - score = 81.24; 26S proteasome regulatory subunit, putative	complement(join(1110461..1112262,1112351..1113866))	Theileria annulata	3863700
TA06140	CDS	TA06140	NC_011129.2	1114727	1116905	D	Tap349e08.q2ks7.C.cand.117 - score = 44.50; uncharacterized protein	join(1114727..1116508,1116612..1116905)	Theileria annulata	3863699
TA06085	CDS	TA06085	NC_011129.2	1116941	1119599	D	Tap349e08.q2ks7.C.cand.118 - score = 38.73; uncharacterized protein	join(1116941..1116956,1117142..1117374,1117407..1117494,1117601..1117708,1117772..1117872,1117966..1118253,1118284..1118379,1118412..1118561,1118654..1118770,1118841..1119017,1119091..1119396,1119489..1119599)	Theileria annulata	3863804
TA05980	CDS	TA05980	NC_011129.2	1119719	1121345	R	Tap349e08.q2ks7.cand.8 - score = 33.14; molecular chaperone, putative	complement(join(1119719..1120051,1120109..1120642,1120718..1120810,1120887..1120983,1121099..1121247,1121277..1121345))	Theileria annulata	3864299
TA05925	CDS	TA05925	NC_011129.2	1121883	1123087	R	Tap349e08.q2ks7.cand.7 - score = 38.76; uncharacterized protein	complement(join(1121883..1122227,1122259..1122310,1122362..1122591,1122654..1122701,1122735..1122840,1122879..1123087))	Theileria annulata	3864288
TA05870	CDS	TA05870	NC_011129.2	1123466	1126027	R	Tap349e08.q2ks7.cand.6 - score = 49.03; Signal peptide predicted for TA05870 by SignalP 2.0 HMM (Signal peptide probability 0.938, signal anchor probability 0.000) with cleavage site probability 0.522 between residues 22 and 23; rhoptry-associated protein, putative	complement(1123466..1126027)	Theileria annulata	3864277
TA05815	CDS	TA05815	NC_011129.2	1126651	1128534	R	Tap349e08.q2ks7.cand.5 - score = 30.59; Signal peptide predicted for TA05815 by SignalP 2.0 HMM (Signal peptide probability 0.824, signal anchor probability 0.084) with cleavage site probability 0.391 between residues 26 and 27; uncharacterized protein	complement(1126651..1128534)	Theileria annulata	3863565
TA05760	CDS	TA05760	NC_011129.2	1129286	1131043	R	Tap349e08.q2ks7.cand.4 - score = 46.24; Signal peptide predicted for TA05760 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.001) with cleavage site probability 0.878 between residues 22 and 23; rhoptry-associated protein, putative	complement(1129286..1131043)	Theileria annulata	3863554
TA05705	CDS	TA05705	NC_011129.2	1131774	1133951	R	Tap349e08.q2ks7.cand.3 - score = 53.66; Signal peptide predicted for TA05705 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.500 between residues 21 and 22; rhoptry-associated protein, putative	complement(1131774..1133951)	Theileria annulata	3863921
TA05650	CDS	TA05650	NC_011129.2	1134497	1134960	R	Tap349e08.q2ks7.cand.2 - score = 20.29; uncharacterized protein	complement(join(1134497..1134550,1134580..1134705,1134736..1134765,1134796..1134960))	Theileria annulata	3863910
TA05645	CDS	TA05645	NC_011129.2	1135184	1141506	D	Tap349e08.q2ks7.C.cand.120 - score = 53.58; DEAD-box-family helicase, putative	join(1135184..1135336,1135369..1135548,1135648..1135920,1136155..1136224,1136256..1136740,1137061..1137201,1137234..1137328,1137418..1137552,1137946..1138843,1138905..1138996,1139464..1139819,1139876..1141506)	Theileria annulata	3863909
TA05640	CDS	TA05640	NC_011129.2	1142178	1143809	D	2 probable transmembrane helices predicted for TA05640 by TMHMM2.0 at aa 62-84 and 94-108; uncharacterized protein	join(1142178..1142451,1143526..1143809)	Theileria annulata	3863908
TA05635	CDS	TA05635	NC_011129.2	1144122	1144613	D	Tap349e08.q2ks7.C.cand.122 - score = 7.18; 2 probable transmembrane helices predicted for TA05635 by TMHMM2.0 at aa 114-136 and 140-162; uncharacterized protein	1144122..1144613	Theileria annulata	3863907
TA05630	CDS	TA05630	NC_011129.2	1146267	1147431	D	Tap349e08.q2ks7.C.cand.123 - score = 12.57; phosphotyrosyl phosphatase activator (PPTA) protein, putative	join(1146267..1146530,1146668..1146788,1146852..1146951,1147054..1147201,1147318..1147431)	Theileria annulata	3863527
TA05626	CDS	TA05626	NC_011129.2	1147771	1149832	D	uncharacterized protein	join(1147771..1147896,1148020..1148103,1148136..1148246,1148969..1149832)	Theileria annulata	3863526
TA05625	CDS	TA05625	NC_011129.2	1150624	1152986	D	uncharacterized protein	join(1150624..1150648,1150900..1152986)	Theileria annulata	3863525
TA05620	CDS	TA05620	NC_011129.2	1153549	1154572	D	uncharacterized protein	join(1153549..1153777,1154018..1154382,1154492..1154572)	Theileria annulata	3863524
TA05615	CDS	TA05615	NC_011129.2	1155914	1156504	D	Tap349e08.q2ks7.C.cand.127 - score = 14.65; Signal peptide predicted for TA05615 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.966 between residues 17 and 18; uncharacterized protein	1155914..1156504	Theileria annulata	3863523
TA05610	CDS	TA05610	NC_011129.2	1156841	1158773	R	Tap349e08.q2ks7.cand.1 - score = 30.40; uncharacterized protein	complement(join(1156841..1158683,1158742..1158773))	Theileria annulata	3863522
TA05605	CDS	TA05605	NC_011129.2	1158826	1160182	D	uncharacterized protein	join(1158826..1158829,1159119..1159231,1159319..1160182)	Theileria annulata	3863521
TA18476	CDS	TA18476	NC_011129.2	1161513	1165313	D	uncharacterized protein	1161513..1165313	Theileria annulata	3864315
TA02750	CDS	TA02750	NC_011129.2	1167748	1170131	R	Tap152h01.q1c.C.cand.47 - score = 16.97; SMART pfam:asp (PF00026) at aa 135-471, E()=4.90e-18; pepsinogen, putative	complement(join(1167748..1168136,1168377..1168617,1168722..1168853,1169219..1169905,1170021..1170131))	Theileria annulata	3863964
TA02755	CDS	TA02755	NC_011129.2	1171727	1173966	D	SMART 2 transmembrane domains at aa 443-465 and 472-494; 2 probable transmembrane helices predicted for TA02755 by TMHMM2.0 at aa 443-465 and 472-494; uncharacterized protein	join(1171727..1172666,1172732..1172786,1172903..1173019,1173143..1173209,1173240..1173430,1173482..1173608,1173687..1173827,1173868..1173966)	Theileria annulata	3863965
TA02760	CDS	TA02760	NC_011129.2	1176417	1178595	R	Tap152h01.q1c.C.cand.46 - score = 29.77; uncharacterized protein	complement(join(1176417..1178363,1178512..1178595))	Theileria annulata	3863966
TA02765	CDS	TA02765	NC_011129.2	1179883	1185333	R	could have another exon in between the exonVI & exon VII; SMART pfam:Adaptin_N (PF01602) at aa 1-471, E()=4.00e-02; coatamer, beta subunit, putative	complement(join(1179883..1180765,1182021..1183440,1183661..1183849,1184014..1184104,1184213..1184332,1184458..1184584,1185185..1185333))	Theileria annulata	3863967
TA02770	CDS	TA02770	NC_011129.2	1186502	1186945	R	Tap152h01.q1c.C.cand.43 - score = 8.99; Signal peptide predicted for TA02770 by SignalP 2.0 HMM (Signal peptide probability 0.640, signal anchor probability 0.007) with cleavage site probability 0.426 between residues 21 and 22; uncharacterized protein	complement(1186502..1186945)	Theileria annulata	3863968
TA02775	CDS	TA02775	NC_011129.2	1187102	1189380	R	SMART pfam:Ribosomal_L15 (PF01305) at aa 160-253, E()=1.10e-03; ribosomal protein L15, putative	complement(join(1187102..1187260,1187662..1187829,1188154..1188361,1188470..1188639,1188892..1189380))	Theileria annulata	3863969
TA02780	CDS	TA02780	NC_011129.2	1189450	1191917	R	uncharacterized protein	complement(join(1189450..1191717,1191807..1191917))	Theileria annulata	3863970
TA02785	CDS	TA02785	NC_011129.2	1193314	1194353	D	Tap152h01.q1c.cand.2 - score = 25.87; Signal peptide predicted for TA02785 by SignalP 2.0 HMM (Signal peptide probability 0.897, signal anchor probability 0.000) with cleavage site probability 0.658 between residues 15 and 16; uncharacterized protein	join(1193314..1193360,1193392..1193408,1193438..1193570,1193686..1193780,1193856..1193947,1194022..1194057,1194091..1194103,1194133..1194218,1194306..1194353)	Theileria annulata	3863971
TA02790	CDS	TA02790	NC_011129.2	1194458	1195142	R	SMART pfam:COX2 (PF00116) at aa 2-156, E()=5.60e-51; cytochrome C oxidase subunit II (COX2)	complement(join(1194458..1194642,1194848..1195142))	Theileria annulata	3863972
TA02795	CDS	TA02795	NC_011129.2	1196179	1197506	R	SMART pfam:Ribosomal_L17 (PF01196) at aa 32-129, E()=1.90e-08; 50 ribosomal protein L17, putative	complement(join(1196179..1196447,1196787..1196893,1197406..1197506))	Theileria annulata	3863973
TA02800	CDS	TA02800	NC_011129.2	1197689	1201197	D	SMART pfam:MMR_HSR1 (Pf01926) at aa 409-806, E()=4.90e-28; GTPase, putative	join(1197689..1198858,1198969..1199121,1199315..1199392,1199424..1199898,1200029..1200104,1200190..1200914,1201036..1201056,1201166..1201197)	Theileria annulata	3863974
TA02805	CDS	TA02805	NC_011129.2	1201366	1203305	R	Tap152h01.q1c.C.cand.40 - score = 21.32; SMART 1 transmembrane domain at aa 519-538; 1 probable transmembrane helix predicted for TA02805 by TMHMM2.0 at aa 519-538; uncharacterized protein	complement(join(1201366..1202627,1202936..1203305))	Theileria annulata	3863975
TA02810	CDS	TA02810	NC_011129.2	1205203	1207627	D	Tap152h01.q1c.cand.5 - score = 32.02; SMART S_TKc (SM0220) at aa 15-315, E()=8.77e-102; protein kinase, putative	join(1205203..1205749,1206045..1207627)	Theileria annulata	3864407
TA02815	CDS	TA02815	NC_011129.2	1207816	1209117	D	Tap152h01.q1c.cand.6 - score = 32.61; SMART pfam:GAR_B (PF02842) at aa 46-124, E()=1.30e-02; pfam:ATP-grasp (PF02222) at aa 64-244, E()=6.40e-23; pfam:ligase_CoA (PF00549) at aa 291-433, E()=1.60e-44; succinyl-coA ligase, subunit, putative	1207816..1209117	Theileria annulata	3864408
TA02820	CDS	TA02820	NC_011129.2	1209208	1210319	R	Tap152h01.q1c.C.cand.39 - score = 18.43; uncharacterized protein	complement(join(1209208..1209376,1209465..1209535,1209599..1209733,1209807..1209887,1209917..1210078,1210173..1210319))	Theileria annulata	3864409
TA02825	CDS	TA02825	NC_011129.2	1210973	1211524	D	Tap152h01.q1c.cand.7 - score = 14.46; SMART pfam:KOW (PF00467) at aa 8-40, E()=6.40e-02; pfam:Ribosomal_L14e (PF01929) at aa 48-124, E()=1.10e-20; 60S ribosomal protein L14, putative	join(1210973..1211044,1211074..1211138,1211275..1211524)	Theileria annulata	3864410
TA02830	CDS	TA02830	NC_011129.2	1211674	1213537	R	uncharacterized protein	complement(join(1211674..1212262,1212307..1212773,1212833..1213021,1213116..1213255,1213290..1213371,1213469..1213537))	Theileria annulata	3864411
TA02835	CDS	TA02835	NC_011129.2	1213816	1214940	R	uncharacterized protein	complement(join(1213816..1213973,1214037..1214100,1214131..1214940))	Theileria annulata	3864412
TA02840	CDS	TA02840	NC_011129.2	1215325	1216824	D	Tap152h01.q1c.cand.8 - score = 20.57; uncharacterized protein	join(1215325..1215400,1215509..1215691,1215734..1216130,1216163..1216382,1216490..1216509,1216626..1216824)	Theileria annulata	3864413
TA02845	CDS	TA02845	NC_011129.2	1217435	1225972	D	Tap152h01.q1c.cand.9 - score = 185.03; SMART 3 pfam:DUF529 (PF04385) domains at aa 709-858, E()=3.50e-23; 949-1095, E()=2.00e-09; 1242-1393, E()=6.40e-27; SfiI-subtelomeric fragment related protein family member, putative	1217435..1225972	Theileria annulata	3864414
TA02850	CDS	TA02850	NC_011129.2	1226749	1227021	R	SMART pfam:Nop10p (PF04135) at aa 3-53, E()=9.70e-25; nucleolar protein (Nop10)	complement(join(1226749..1226871,1226968..1227021))	Theileria annulata	3864415
TA02855	CDS	TA02855	NC_011129.2	1227224	1228013	D	Tap152h01.q1c.cand.10 - score = 44.99; SMARt pfam:DUF602 (PF04641) at aa 1-213, E()=1.00e-11; uncharacterized protein	join(1227224..1227406,1227493..1227639,1227696..1228013)	Theileria annulata	3864416
TA02860	CDS	TA02860	NC_011129.2	1228174	1229861	D	Tap152h01.q1c.cand.10 - score = 44.99; uncharacterized protein	join(1228174..1228678,1228708..1228847,1228889..1228977,1229008..1229092,1229122..1229160,1229190..1229249,1229283..1229861)	Theileria annulata	3864417
TA02865	CDS	TA02865	NC_011129.2	1230500	1231906	D	Tap152h01.q1c.cand.11 - score = 17.86; SMART 9 transmembrane domains at aa 95-117, 124-146, 150-172, 185-207, 246-268, 280-297, 312-332, 353-375 and 385-407; 10 probable transmembrane helices predicted for TA02865 by TMHMM2.0 at aa 17-36, 95-117, 124-146, 150-172, 185-207, 246-268, 280-297, 312-332, 353-375 and 385-407; Tpr-related protein family member, putative	1230500..1231906	Theileria annulata	3864418
TA02870	CDS	TA02870	NC_011129.2	1232088	1233475	R	Tap152h01.q1c.C.cand.36 - score = 26.00; SMART 1 transmembrane domain at aa 270-292; 1 probable transmembrane helix predicted for TA02870 by TMHMM2.0 at aa 270-292; uncharacterized protein	complement(join(1232088..1233074,1233176..1233475))	Theileria annulata	3864419
TA02875	CDS	TA02875	NC_011129.2	1234471	1235859	R	Tap152h01.q1c.C.cand.34 - score = 32.94; uncharacterized protein	complement(join(1234471..1234623,1234654..1234806,1234882..1235859))	Theileria annulata	3864420
TA02880	CDS	TA02880	NC_011129.2	1236420	1239925	R	Tap152h01.q1c.C.cand.33 - score = 75.80; SMART MCM (SM00350) at aa 379-886, E()=1.37e-20; AAA (SM00382) at aa 613-762, E()=2.53e-04; minichromosome maintenance (MCM), putative	complement(join(1236420..1236581,1236619..1236834,1236868..1237092,1237146..1237218,1237248..1237325,1237376..1237503,1237533..1237690,1237740..1237895,1237976..1238270,1238347..1238410,1238463..1239709,1239745..1239821,1239853..1239925))	Theileria annulata	3864421
TA02885	CDS	TA02885	NC_011129.2	1240452	1241440	D	Tap152h01.q1c.cand.12 - score = 24.55; SMART DnaJ (SM00271) at aa 7-66, E()=2.38e-29; molecular chaperone, putative	join(1240452..1240563,1240673..1240774,1240803..1240893,1240968..1241047,1241107..1241286,1241316..1241440)	Theileria annulata	3864422
TA02890	CDS	TA02890	NC_011129.2	1241619	1243270	R	Tap152h01.q1c.C.cand.32 - score = 32.02; SMART HDc (SM00471) at aa 167-335, E()=6.10e-04; phosphodiesterase, putative	complement(join(1241619..1241807,1241940..1242206,1242282..1242514,1242546..1242660,1242740..1243270))	Theileria annulata	3864423
TA02895	CDS	TA02895	NC_011129.2	1244039	1245179	R	SMART pfam:Ribosomal_S18 (PF01084) at aa 261-314, E()=1.80e-13; uncharacterized protein	complement(join(1244039..1244274,1244334..1244545,1244581..1245179))	Theileria annulata	3864424
TA02900	CDS	TA02900	NC_011129.2	1245536	1249309	D	SMART 2 transmembrane domains at aa 1178-1200 and 1207-1229; 2 probable transmembrane helices predicted for TA02900 by TMHMM2.0 at aa 1178-1200 and 1207-1229; uncharacterized protein	join(1245536..1249098,1249129..1249309)	Theileria annulata	3864425
TA02905	CDS	TA02905	NC_011129.2	1249395	1251276	R	uncharacterized protein	complement(join(1249395..1249733,1249804..1250354,1250390..1251148,1251216..1251276))	Theileria annulata	3864387
TA02910	CDS	TA02910	NC_011129.2	1251711	1253249	R	Tap152h01.q1c.C.cand.29 - score = 27.89; SMART pfam:Clat_adaptor_s (PF01217) at aa 1-135, E()=4.40e-02; pfam:Adap_comp_sub (PF00928) at aa 5-490, E()=3.70e-30; adaptor protein, putative	complement(join(1251711..1252345,1252403..1253249))	Theileria annulata	3864388
TA02915	CDS	TA02915	NC_011129.2	1254087	1255133	D	Tap152h01.q1c.cand.14 - score = 27.49; SMART pfam:GDPD (PF03009) at aa 9-341, E()=1.40e-04; uncharacterized protein	1254087..1255133	Theileria annulata	3864389
TA02920	CDS	TA02920	NC_011129.2	1255202	1258730	R	Tap152h01.q1c.C.cand.28 - score = 95.44; uncharacterized protein	complement(join(1255202..1258323,1258394..1258730))	Theileria annulata	3864390
TA02925	CDS	TA02925	NC_011129.2	1259859	1261110	R	Tap152h01.q1c.C.cand.27 - score = 23.75; SMART pfam:adh_short (PF00106) at aa 3-331, E()=1.30e-09; short chain dehydrogenase, putative	complement(join(1259859..1260100,1260169..1260559,1260619..1261110))	Theileria annulata	3864391
TA02930	CDS	TA02930	NC_011129.2	1261190	1264015	R	uncharacterized protein	complement(1261190..1264015)	Theileria annulata	3864392
TA02935	CDS	TA02935	NC_011129.2	1264165	1266519	R	Tap152h01.q1c.C.cand.26 - score = 71.74; SMART 5 transmembrane domains at aa 45-67, 106-128, 149-171, 181-203 and 224-246; RING (SM00184) at aa 304-342, E()=2.17e-05; ZnF_NFX (SM00438) at aa 320-344, E()=0.00e+00; 6 probable transmembrane helices predicted for TA02935 by TMHMM2.0 at aa 10-32, 45-67, 106-128, 149-171, 181-203 and 224-246; Signal peptide predicted for TA02935 by SignalP 2.0 HMM (Signal peptide probability 0.665, signal anchor probability 0.064) with cleavage site probability 0.196 between residues 22 and 23; uncharacterized protein	complement(join(1264165..1264994,1265044..1265216,1265266..1265339,1265401..1265472,1265504..1265601,1265640..1265718,1265784..1265933,1265964..1266134,1266218..1266310,1266382..1266519))	Theileria annulata	3864393
TA02940	CDS	TA02940	NC_011129.2	1266666	1267839	D	Tap152h01.q1c.cand.15 - score = 41.42; ribosomal protein L1, putative	join(1266666..1267305,1267391..1267839)	Theileria annulata	3864394
TA02945	CDS	TA02945	NC_011129.2	1268000	1269888	D	Tap152h01.q1c.cand.15 - score = 41.42; SMART 1 transmembrane domain at aa 572-589; 1 probable transmembrane helix predicted for TA02945 by TMHMM2.0 at aa 572-589; Tpr-related protein family member, putative	join(1268000..1268119,1268172..1269048,1269113..1269888)	Theileria annulata	3864395
TA02955	CDS	TA02955	NC_011129.2	1270141	1272009	D	Tap152h01.q1c.cand.16 - score = 74.60; Tpr-related protein family member, putative	1270141..1272009	Theileria annulata	3864396
TA02960	CDS	TA02960	NC_011129.2	1272358	1277254	D	Theileria parva Tpr-like protein, distantly related, mixture; SMART 3 transmembrane domains at aa 36-58, 78-100 and 112-134; 1 probable transmembrane helix predicted for TA02960 by TMHMM2.0 at aa 28-50; Signal anchor predicted for TA02960 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.995) with cleavage site probability 0.001 between residues 45 and 46; Tpr-related protein family member, putative	join(1272358..1272777,1272808..1273112,1273158..1274507,1274570..1275482,1275548..1276118,1276153..1276346,1276394..1277254)	Theileria annulata	3864397
TA02965	CDS	TA02965	NC_011129.2	1277259	1277634	R	Tap152h01.q1c.C.cand.25 - score = 83.65; SMART pfam:Ribosomal_S25 (PF03297) at aa 1-104, E()=1.10e-40; 40S ribosomal S25 protein, putative	complement(join(1277259..1277501,1277560..1277634))	Theileria annulata	3864398
TA02970	CDS	TA02970	NC_011129.2	1277915	1279790	R	Tap152h01.q1c.C.cand.25 - score = 83.65; SMART pfam:RNA_pol_Rpc34 (PF05150) at aa 7-297, E()=2.30e-08; 4 transmembrane domains at aa 298-317, 322-344, 408-430 and 437-459; 4 probable transmembrane helices predicted for TA02970 by TMHMM2.0 at aa 298-317, 322-344, 408-430 and 437-459; DNA-directed RNA polymerase III (-specific) subunit (RPC34)	complement(join(1277915..1278492,1278637..1278715,1278801..1278941,1278981..1279259,1279344..1279486,1279580..1279790))	Theileria annulata	3864399
TA02975	CDS	TA02975	NC_011129.2	1280029	1281446	R	SMART 1 transmembrane domain at aa 49-71; 1 probable transmembrane helix predicted for TA02975 by TMHMM2.0 at aa 49-71; uncharacterized protein	complement(join(1280029..1280392,1280428..1280444,1280463..1280627,1280676..1280799,1280836..1280964,1280998..1281446))	Theileria annulata	3864400
TA02980	CDS	TA02980	NC_011129.2	1281560	1283908	R	Tap152h01.q1c.C.cand.25 - score = 83.65; SMART pfam:AMA-1 (PF02430) at aa 204-739, E()=1.30e-16; 1 probable transmembrane helix predicted for TA02980 by TMHMM2.0 at aa 693-715; integral membrane protein (apical merozoite antigen), putative	complement(1281560..1283908)	Theileria annulata	3864401
TA02985	CDS	TA02985	NC_011129.2	1284582	1286085	R	Tap152h01.q1c.C.cand.24 - score = 25.81; SMART 2 transmembrane domains at aa 85-107 and 122-141; pfam:CDC50 (PF03381) at aa 228-444, E()=1.10e-03; 3 probable transmembrane helices predicted for TA02985 by TMHMM2.0 at aa 85-107, 122-141 and 412-434; uncharacterized protein	complement(join(1284582..1285026,1285108..1285318,1285395..1286085))	Theileria annulata	3864402
TA02990	CDS	TA02990	NC_011129.2	1287241	1289357	D	Tap152h01.q1c; uncharacterized protein	join(1287241..1287523,1287613..1289075,1289190..1289357)	Theileria annulata	3864403
TA02995	CDS	TA02995	NC_011129.2	1290014	1294966	D	Tap152h01.q1c.cand.19 - score = 88.65; SMART 3 pfam:DUF29 (PF04385) domains at aa 544-683, E()=5.80e-74; 969-1097, E()=3.00e-07; 1437-1600, E()=2.90e-16; pfam:EMA (PF02468) at aa 518-714, E()=2.20e-02; SfiI-subtelomeric fragment related protein family member, putative	1290014..1294966	Theileria annulata	3864404
TA03000	CDS	TA03000	NC_011129.2	1295306	1299889	R	Tap152h01.q1c.C.cand.22 - score = 54.35; SMART 5 transmembrane domains at aa 143-165, 178-200, 288-310, 317-339 and 444-466; ZnF_NFX (SM00438) at aa 242-264, E()=0.00e+00; 2 AAA (SM00382) domains at aa 548-747, E()=3.31e-01; 1264-1498, E()=8.15e-02; pfam:ABC_membrane (PF00664) at aa 847-1135, E()=5.90e-03; 10 probable transmembrane helices predicted for TA03000 by TMHMM2.0 at aa 143-165, 178-200, 288-310, 317-339, 444-466, 837-859, 900-922, 976-998, 1002-1021 and 1085-1107; (subtelomeric) ABC-transporter protein family member, putative	complement(1295306..1299889)	Theileria annulata	3864405
TA03005	CDS	TA03005	NC_011129.2	1300385	1302719	D	uncharacterized protein	join(1300385..1300561,1300603..1300722,1300763..1300885,1300938..1301039,1301208..1301358,1301399..1301456,1301492..1301633,1301724..1301899,1301932..1302034,1302087..1302148,1302266..1302719)	Theileria annulata	3864406
TA03010	CDS	TA03010	NC_011129.2	1302863	1303576	R	Tap152h01.q1c.C.cand.21 - score = 30.54; SMART ZnF_NFX (SM00438) at aa 95-112, E()=0.00e+00; uncharacterized protein	complement(1302863..1303576)	Theileria annulata	3863869
TA03015	CDS	TA03015	NC_011129.2	1303778	1304509	R	Tap152h01.q1c.C.cand.21 - score = 30.54; SMART pfam:DIM1 (PF02966) at aa 2-190, E()=6.70e-69; 1 probable transmembrane helix predicted for TA03015 by TMHMM2.0 at aa 163-185; U5 snRNP-specific component (DIM1)	complement(join(1303778..1304146,1304214..1304315,1304358..1304435,1304468..1304509))	Theileria annulata	3863870
TA03020	CDS	TA03020	NC_011129.2	1304808	1307977	D	Tap152h01.q1c.cand.21 - score = 212.81; SMART DEXDc (SM00487) at aa 301-485, E()=1.50e-34; AAA (SM00382) at aa 318-457, E()=4.98e-03; HELICc (SM00490) at aa 526-633, E()=1.38e-15; pfam:HA2 (PF04408) at aa 692-787, E()=1.40e-30; DEAD-box family helicase, putative	join(1304808..1306228,1306297..1306479,1306542..1306759,1306829..1307026,1307094..1307330,1307397..1307977)	Theileria annulata	3863871
TA03025	CDS	TA03025	NC_011129.2	1308022	1314454	D	Tap152h01.q1c.cand.21 - score = 212.81; SMART 8 pfam:DUF529 (PF04385) domains at aa 85-223, E()=1.40e-65; 440-593, E()=2.90e-25; 862-1008, E()=6.90e-34; 1052-1190, E()=1.50e-62; 1257-1398, E()=5.10e-67; 1402-1600, E()=2.60e-75; 1696-1836, E()=6.10e-70; 1884-2019, E()=1.00e-57; ZnF_NFX (SM00438) at aa 797-823, E()=0.00e+00; SfiI-subtelomeric fragment related protein family member, putative	join(1308022..1308048,1308110..1314454)	Theileria annulata	3863872
TA03030	CDS	TA03030	NC_011129.2	1315117	1316381	R	SMART RAB 38-209, E()=1.96e-72; 1 probable transmembrane helix predicted for TA03030 by TMHMM2.0 at aa 205-227; Rab5 GTPase, putative	complement(join(1315117..1315277,1315337..1315430,1315519..1315595,1315627..1315739,1315772..1315810,1315967..1316036,1316168..1316381))	Theileria annulata	3863873
TA03035	CDS	TA03035	NC_011129.2	1316645	1317349	R	Tap152h01.q1c.C.cand.20 - score = 22.75; SMART pfam:EFP (PF01132) at aa 19-152, E()=1.50e-05; elongation factor (prokaryotic EFP)	complement(join(1316645..1316730,1316815..1316952,1316984..1317053,1317153..1317217,1317247..1317349))	Theileria annulata	3863874
TA03040	CDS	TA03040	NC_011129.2	1317498	1318550	R	Tap152h01.q1c.C.cand.19 - score = 10.89; SMART RRM (SM00360) at aa 66-130, E()=3.74e-05; uncharacterized protein	complement(join(1317498..1317613,1317673..1317754,1317989..1318003,1318030..1318071,1318413..1318550))	Theileria annulata	3863875
TA03045	CDS	TA03045	NC_011129.2	1318752	1320881	D	Tap152h01.q1c.cand.22 - score = 12.82; SMART pfam:UPF0020 (PF01170) at aa 225-404, E()=4.40e-07; uncharacterized protein	join(1318752..1319075,1319207..1319440,1319530..1319703,1319987..1320066,1320199..1320284,1320315..1320394,1320425..1320540,1320594..1320749,1320791..1320881)	Theileria annulata	3863876
TA03050	CDS	TA03050	NC_011129.2	1320991	1322396	R	SMART pfam:TP_methylase (PF00590) at aa 2-222, E()=9.50e-07; diphtine synthase, putative	complement(join(1320991..1321235,1321308..1321372,1321410..1321597,1321643..1321751,1321841..1322022,1322256..1322396))	Theileria annulata	3863877
TA03055	CDS	TA03055	NC_011129.2	1322823	1323944	D	SMART pfam:ADK (PF00406) at aa 32-218, E()=2.20e-74; pfam:ADK_lid (PF05191) at aa 154-189, E()=1.10e-19; adenylate kinase, putative	join(1322823..1322942,1323049..1323153,1323318..1323458,1323582..1323944)	Theileria annulata	3863878
TA03060	CDS	TA03060	NC_011129.2	1324270	1324944	D	Tap152h01.q1c.cand.24 - score = 12.45; SfiI-subtelomeric fragment related protein family member, putative	1324270..1324944	Theileria annulata	3863879
TA03065	CDS	TA03065	NC_011129.2	1325193	1326420	R	Tap152h01.q1c.C.cand.17 - score = 14.54; SMART 2 ZnF_C2H2 (SM00355) domains at aa 13-36, E()=8.52e+00; 37-60, E()=8.34e-03; uncharacterized protein	complement(join(1325193..1325942,1326247..1326420))	Theileria annulata	3863880
TA03070	CDS	TA03070	NC_011129.2	1326857	1328682	R	Tap152h01.q1c.C.cand.16 - score = 28.96; SMART 3 transmembrane domains at aa 12-34, 49-71 and 201-223; 3 probable transmembrane helices predicted for TA03070 by TMHMM2.0 at aa 12-34, 49-71 and 201-223; uncharacterized protein	complement(join(1326857..1327918,1327962..1328065,1328106..1328682))	Theileria annulata	3863881
TA03075	CDS	TA03075	NC_011129.2	1328983	1330237	D	SMART 2 pfam:TBP (PF00352) at aa 41-126, E()=7.20e-32; 132-221, E()=2.10e-27; transcription initiation factor (TBP)	join(1328983..1329100,1329359..1329550,1329665..1329868,1330083..1330237)	Theileria annulata	3863882
TA03080	CDS	TA03080	NC_011129.2	1330942	1335044	D	Tap152h01.q1c.cand.26 - score = 72.72; SMART MIF4G (SM00543) at aa 648-952, E()=7.64e-16; uncharacterized protein	join(1330942..1334089,1334204..1334334,1334521..1334642,1334744..1335044)	Theileria annulata	3863883
TA03085	CDS	TA03085	NC_011129.2	1335076	1336738	R	Tap152h01.q1c.C.cand.15 - score = 8.46; uncharacterized protein	complement(join(1335076..1335310,1335475..1335633,1335665..1336101,1336343..1336375,1336411..1336430,1336561..1336738))	Theileria annulata	3863884
TA03090	CDS	TA03090	NC_011129.2	1337014	1338381	R	Tap152h01.q1c.C.cand.14 - score = 11.59; uncharacterized protein	complement(join(1337014..1337268,1337341..1337418,1337567..1337648,1337812..1337964,1338101..1338381))	Theileria annulata	3863885
TA03095	CDS	TA03095	NC_011129.2	1338579	1338896	D	Tap152h01.q1c.cand.27 - score = 7.29; uncharacterized protein	1338579..1338896	Theileria annulata	3863886
TA03100	CDS	TA03100	NC_011129.2	1339179	1340896	D	Tap152h01.q1c.cand.28 - score = 17.81; SMART 2 WD40 (SM0320) domains at aa 242-282, E()=1.12e-02; 285-326, E()=3.07e+01; uncharacterized protein	join(1339179..1339290,1339459..1339719,1339834..1340010,1340226..1340896)	Theileria annulata	3863887
TA03105	CDS	TA03105	NC_011129.2	1341012	1341167	D	Tap152h01.q1c.cand.28 - score = 17.81; uncharacterized protein	1341012..1341167	Theileria annulata	3863508
TA03110	CDS	TA03110	NC_011129.2	1341437	1343296	R	Tap152h01.q1c.C.cand.13 - score = 37.22; Signal peptide predicted for TA03110 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.928 between residues 23 and 24; Tash-like protein, putative	complement(1341437..1343296)	Theileria annulata	3863509
TA03115	CDS	TA03115	NC_011129.2	1343582	1346899	R	Tap152h01.q1c.C.cand.12 - score = 71.37; Signal peptide predicted for TA03115 by SignalP 2.0 HMM (Signal peptide probability 0.860, signal anchor probability 0.006) with cleavage site probability 0.615 between residues 26 and 27; Tash-like protein, putative	complement(1343582..1346899)	Theileria annulata	3863510
TA03120	CDS	TA03120	NC_011129.2	1347606	1348295	R	Tap152h01.q1c.C.cand.11 - score = 15.22; Signal peptide predicted for TA03120 by SignalP 2.0 HMM (Signal peptide probability 0.874, signal anchor probability 0.060) with cleavage site probability 0.793 between residues 23 and 24; Tash-like protein, putative	complement(1347606..1348295)	Theileria annulata	3863511
TA03125	CDS	TA03125	NC_011129.2	1348922	1350172	R	Tap152h01.q1c.C.cand.10 - score = 40.23; Tash1-like protein, putative	complement(1348922..1350172)	Theileria annulata	3863512
TA03130	CDS	TA03130	NC_011129.2	1350792	1352081	R	Tap152h01.q1c.C.cand.9 - score = 36.44; SMART 1 transmembrane domain at aa 7-26; AT_hook (SM0384) at aa 158-170, E()=5.93e-01; 1 probable transmembrane helix predicted for TA03130 by TMHMM2.0 at aa 7-26; Tash(AT)-like protein, putative	complement(1350792..1352081)	Theileria annulata	3863513
TA03135	CDS	TA03135	NC_011129.2	1352701	1354377	R	Tap152h01.q1c.C.cand.8 - score = 46.46; SMART 2 AT_hook (SM00384) domains at aa 418-430, E()=1.40e+00; 436-448, E()=3.88e+00; Tash(AT)-like protein, putative	complement(1352701..1354377)	Theileria annulata	3863514
TA03140	CDS	TA03140	NC_011129.2	1354992	1356164	R	Tap152h01.q1c.C.cand.7 - score = 35.04; SMART 1 transmembrane domain at aa 7-26; 3 AT_hook (SM00384) domains at aa 139-151, E()=9.29e-01; 169-181, E()=1.82e-01; and 186-198, E()=1.42e-01; 1 probable transmembrane helix predicted for TA03140 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03140 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-or TashAT-like protein, putative	complement(1354992..1356164)	Theileria annulata	3863515
TA03145	CDS	TA03145	NC_011129.2	1356648	1357784	R	Tap152h01.q1c.C.cand.6 - score = 29.20; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03145 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03145 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-like protein, putative	complement(1356648..1357784)	Theileria annulata	3863516
TA03150	CDS	TA03150	NC_011129.2	1358162	1359373	R	Tap152h01.q1c.C.cand.5 - score = 28.77; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03150 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03150 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-like protein, putative	complement(1358162..1359373)	Theileria annulata	3863517
TA03155	CDS	TA03155	NC_011129.2	1359971	1360876	R	Tap152h01.q1c.C.cand.4 - score = 26.95; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03155 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03155 by SignalP 2.0 HMM (Signal peptide probability 0.686, signal anchor probability 0.170) with cleavage site probability 0.623 between residues 23 and 24; Tash1-like protein, putative	complement(1359971..1360876)	Theileria annulata	3863518
TA03160	CDS	TA03160	NC_011129.2	1361311	1362822	R	Tap152h01.q1c.C.cand.3 - score = 40.35; SMART 1 transmembrane domain at aa 9-28; 1 probable transmembrane helix predicted for TA03160 by TMHMM2.0 at aa 9-28; Signal peptide predicted for TA03160 by SignalP 2.0 HMM (Signal peptide probability 0.786, signal anchor probability 0.154) with cleavage site probability 0.761 between residues 25 and 26; Tash1-like protein, putative	complement(1361311..1362822)	Theileria annulata	3863519
TA03165	CDS	TA03165	NC_011129.2	1363371	1364450	R	Tap152h01.q1c.C.cand.2 - score = 31.89; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03165 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03165 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-like protein, putative	complement(1363371..1364450)	Theileria annulata	3863520
TA20082	CDS	TA20082	NC_011129.2	1364948	1367932	R	Signal peptide predicted for TA20082 by SignalP 2.0 HMM (Signal peptide probability 0.774, signal anchor probability 0.000) with cleavage site probability 0.399 between residues 24 and 25; Tashat3 protein	complement(1364948..1367932)	Theileria annulata	3864462
TA20083	CDS	TA20083	NC_011129.2	1368397	1369395	R	Signal peptide predicted for TA20083 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.005) with cleavage site probability 0.837 between residues 23 and 24; schizont-host nuclear protein	complement(1368397..1369395)	Theileria annulata	3864463
TA20085	CDS	TA20085	NC_011129.2	1369836	1371233	R	Signal peptide predicted for TA20085 by SignalP 2.0 HMM (Signal peptide probability 0.751, signal anchor probability 0.000) with cleavage site probability 0.387 between residues 23 and 24; Tashat1 protein	complement(1369836..1371233)	Theileria annulata	3864464
TA20090	CDS	TA20090	NC_011129.2	1371701	1372699	R	Signal peptide predicted for TA20090 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.005) with cleavage site probability 0.837 between residues 23 and 24; schizont-host nuclear protein	complement(1371701..1372699)	Theileria annulata	3863830
TA20095	CDS	TA20095	NC_011129.2	1373140	1376631	R	Tashat2 protein	complement(1373140..1376631)	Theileria annulata	3863831
TA20100	CDS	TA20100	NC_011129.2	1377294	1378991	D	ubiquitin-activating enzyme, putative	join(1377294..1377529,1377589..1377871,1377927..1377981,1378013..1378185,1378223..1378372,1378419..1378544,1378582..1378652,1378683..1378743,1378802..1378833,1378883..1378991)	Theileria annulata	3863832
TA20105	CDS	TA20105	NC_011129.2	1379081	1381654	R	uncharacterized protein	complement(join(1379081..1379227,1379288..1379379,1379435..1379454,1379582..1379687,1379762..1379859,1379873..1379994,1380113..1381654))	Theileria annulata	3863833
TA20110	CDS	TA20110	NC_011129.2	1381792	1382746	R	uncharacterized protein	complement(join(1381792..1381854,1381934..1382746))	Theileria annulata	3863834
TA20115	CDS	TA20115	NC_011129.2	1382852	1383925	R	uncharacterized protein	complement(join(1382852..1383394,1383446..1383526,1383610..1383708,1383739..1383802,1383882..1383925))	Theileria annulata	3863835
TA20120	CDS	TA20120	NC_011129.2	1384847	1386139	R	uncharacterized protein	complement(join(1384847..1384889,1384964..1385080,1385343..1385440,1385470..1385529,1385674..1385862,1385939..1386001,1386041..1386139))	Theileria annulata	3863836
TA20125	CDS	TA20125	NC_011129.2	1386362	1390270	R	trehalose-6-phosphate synthase	complement(join(1386362..1386509,1386622..1386981,1387205..1387623,1387724..1388329,1388429..1389804,1389904..1390270))	Theileria annulata	3863837
TA20135	CDS	TA20135	NC_011129.2	1391541	1394229	R	uncharacterized protein	complement(join(1391541..1392260,1392328..1393721,1393772..1394024,1394110..1394229))	Theileria annulata	3863838
TA20140	CDS	TA20140	NC_011129.2	1395151	1396784	D	uncharacterized protein	join(1395151..1395334,1395436..1396037,1396117..1396395,1396425..1396494,1396529..1396662,1396695..1396784)	Theileria annulata	3863839
TA20145	CDS	TA20145	NC_011129.2	1397088	1398365	D	splicing factor, putative	1397088..1398365	Theileria annulata	3863840
TA20150	CDS	TA20150	NC_011129.2	1398861	1400261	D	10 probable transmembrane helices predicted for TA20150 by TMHMM2.0 at aa 20-42, 62-79, 92-114, 149-171, 184-206, 250-272, 284-301, 316-335, 356-378 and 388-410; Signal peptide predicted for TA20150 by SignalP 2.0 HMM (Signal peptide probability 0.668, signal anchor probability 0.264) with cleavage site probability 0.471 between residues 37 and 38; uncharacterized protein	1398861..1400261	Theileria annulata	3863841
TA20155	CDS	TA20155	NC_011129.2	1403122	1403903	D	Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA20155 by TMHMM2.0 at aa 4-22; uncharacterized protein	join(1403122..1403271,1403341..1403375,1403446..1403500,1403521..1403606,1403655..1403708,1403867..1403903)	Theileria annulata	3863842
TA20160	CDS	TA20160	NC_011129.2	1404482	1406589	D	1 probable transmembrane helix predicted for TA20160 by TMHMM2.0 at aa 2-21; uncharacterized protein	join(1404482..1404913,1404944..1405073,1405104..1405229,1405262..1406589)	Theileria annulata	3863843
TA20165	CDS	TA20165	NC_011129.2	1406738	1408285	R	Tap404f10.p1c.C.cand.127 - score = 28.53; calcium/calmodulin-dependent protein kinase subunit, putative	complement(1406738..1408285)	Theileria annulata	3863844
TA20170	CDS	TA20170	NC_011129.2	1409804	1410735	R	Tap404f10.p1c.C.cand.126 - score = 15.63; HAP-family transcription factor, putative	complement(join(1409804..1410184,1410259..1410369,1410401..1410514,1410546..1410628,1410669..1410735))	Theileria annulata	3863845
TA20175	CDS	TA20175	NC_011129.2	1411707	1418256	D	DEAD-box helicase, putative	join(1411707..1412441,1412528..1413075,1413161..1413319,1413415..1413692,1413756..1415909,1415943..1416335,1416548..1416672,1416732..1416797,1416830..1417103,1417174..1417917,1417955..1418256)	Theileria annulata	3863846
TA20180	CDS	TA20180	NC_011129.2	1418582	1421393	R	Tap404f10.p1c.C.cand.125 - score = 37.06; 1 probable transmembrane helix predicted for TA20180 by TMHMM2.0 at aa 808-830; uncharacterized protein	complement(join(1418582..1419184,1419296..1419566,1419600..1420070,1420110..1420916,1420948..1421280,1421332..1421393))	Theileria annulata	3863847
TA20185	CDS	TA20185	NC_011129.2	1422055	1423557	R	4 probable transmembrane helices predicted for TA20185 by TMHMM2.0 at aa 172-194, 234-256, 340-362 and 395-417; uncharacterized protein	complement(1422055..1423557)	Theileria annulata	3863848
TA20190	CDS	TA20190	NC_011129.2	1424035	1426038	D	uncharacterized protein	1424035..1426038	Theileria annulata	3864229
TA20195	CDS	TA20195	NC_011129.2	1426079	1428763	R	Alternative gene structure possible; uncharacterized protein	complement(join(1426079..1426400,1426510..1426943,1427039..1428763))	Theileria annulata	3864230
TA20200	CDS	TA20200	NC_011129.2	1428987	1430143	R	proteasome subunit alpha type 5-2, putative	complement(join(1428987..1429168,1429439..1429648,1429737..1430095,1430130..1430143))	Theileria annulata	3864231
TA20205	CDS	TA20205	NC_011129.2	1430283	1432004	R	schizont protein e	complement(join(1430283..1430406,1430463..1430558,1430646..1430873,1430919..1431047,1431080..1431240,1431278..1431394,1431425..1431578,1431628..1431702,1431732..1431857,1431889..1432004))	Theileria annulata	3864232
TA20210	CDS	TA20210	NC_011129.2	1432313	1435691	D	RNA-binding protein, putative	join(1432313..1432346,1432380..1432458,1432495..1432607,1432704..1433398,1433443..1435128,1435224..1435691)	Theileria annulata	3864233
TA20215	CDS	TA20215	NC_011129.2	1436812	1440624	D	Signal peptide predicted for TA20215 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.011) with cleavage site probability 0.760 between residues 26 and 27; uncharacterized protein	join(1436812..1436866,1436900..1440350,1440507..1440624)	Theileria annulata	3864234
TA20220	CDS	TA20220	NC_011129.2	1441477	1446794	D	uncharacterized protein	join(1441477..1441509,1441605..1446511,1446635..1446794)	Theileria annulata	3864235
TA20225	CDS	TA20225	NC_011129.2	1446990	1447409	D	1 probable transmembrane helix predicted for TA20225 by TMHMM2.0 at aa 64-86; uncharacterized protein	join(1446990..1447002,1447067..1447210,1447285..1447409)	Theileria annulata	3864236
TA20230	CDS	TA20230	NC_011129.2	1448726	1451867	D	uncharacterized protein	join(1448726..1450166,1450419..1451491,1451547..1451867)	Theileria annulata	3864237
TA20235	CDS	TA20235	NC_011129.2	1452311	1452829	D	uncharacterized protein	1452311..1452829	Theileria annulata	3864238
TA20240	CDS	TA20240	NC_011129.2	1454660	1458027	D	Contains a putative signal sequence; Contains 7 putative transmembrane domains; alternative gene structure possible; 8 probable transmembrane helices predicted for TA20240 by TMHMM2.0 at aa 10-32, 91-113, 123-142, 149-168, 202-224, 412-434, 444-462 and 464-486; integral membrane protein, putative	join(1454660..1454837,1454889..1454983,1455056..1455142,1455332..1455360,1455457..1455508,1455712..1455778,1455842..1455888,1456037..1456153,1456233..1456251,1456423..1456687,1456772..1456799,1456933..1456961,1457102..1457280,1457319..1457452,1457551..1457569,1457909..1458027)	Theileria annulata	3864239
TA20245	CDS	TA20245	NC_011129.2	1458500	1459136	R	uncharacterized protein	complement(join(1458500..1458557,1458651..1458771,1458819..1458944,1459079..1459136))	Theileria annulata	3864240
TA20250	CDS	TA20250	NC_011129.2	1459309	1463611	D	uncharacterized protein	join(1459309..1459492,1459573..1459862,1459892..1459989,1460330..1460850,1460902..1461053,1461466..1461613,1461808..1461849,1462001..1462098,1462245..1462327,1462362..1462433,1462668..1462947,1463064..1463159,1463365..1463496,1463531..1463611)	Theileria annulata	3864241
TA20255	CDS	TA20255	NC_011129.2	1463699	1464390	R	uncharacterized protein	complement(join(1463699..1464024,1464135..1464390))	Theileria annulata	3864242
TA20260	CDS	TA20260	NC_011129.2	1465373	1468348	R	Signal peptide predicted for TA20260 by SignalP 2.0 HMM (Signal peptide probability 0.671, signal anchor probability 0.000) with cleavage site probability 0.565 between residues 16 and 17; uncharacterized protein	complement(1465373..1468348)	Theileria annulata	3864243
TA20265	CDS	TA20265	NC_011129.2	1469753	1470274	R	60S ribosomal protein l3, putative	complement(1469753..1470274)	Theileria annulata	3864244
TA20270	CDS	TA20270	NC_011129.2	1471020	1471631	R	60S ribosomal protein l3, putative	complement(1471020..1471631)	Theileria annulata	3864245
TA20275	CDS	TA20275	NC_011129.2	1472416	1472892	D	uncharacterized protein	1472416..1472892	Theileria annulata	3864246
TA20280	CDS	TA20280	NC_011129.2	1473424	1474977	D	uncharacterized protein	join(1473424..1473634,1473686..1473850,1473887..1474066,1474103..1474483,1474526..1474977)	Theileria annulata	3864247
TA20285	CDS	TA20285	NC_011129.2	1475079	1478967	R	uncharacterized protein	complement(join(1475079..1475249,1475328..1475528,1475806..1475960,1476019..1476036,1476309..1477982,1478043..1478162,1478373..1478414,1478772..1478967))	Theileria annulata	3864248
TA20290	CDS	TA20290	NC_011129.2	1479085	1479305	D	uncharacterized protein	join(1479085..1479129,1479168..1479305)	Theileria annulata	3863656
TA20295	CDS	TA20295	NC_011129.2	1480230	1480963	D	uncharacterized protein	join(1480230..1480352,1480398..1480633,1480783..1480963)	Theileria annulata	3863657
TA20300	CDS	TA20300	NC_011129.2	1481505	1482947	R	uncharacterized protein	complement(join(1481505..1482442,1482485..1482634,1482677..1482947))	Theileria annulata	3863658
TA20305	CDS	TA20305	NC_011129.2	1484668	1486179	D	transcription elongation factor, putative	join(1484668..1484748,1485004..1486179)	Theileria annulata	3863659
TA20310	CDS	TA20310	NC_011129.2	1487624	1490434	D	Signal peptide predicted for TA20310 by SignalP 2.0 HMM (Signal peptide probability 0.956, signal anchor probability 0.000) with cleavage site probability 0.650 between residues 20 and 21; uncharacterized protein	join(1487624..1487644,1487679..1489131,1489449..1490434)	Theileria annulata	3863660
TA20315	CDS	TA20315	NC_011129.2	1491401	1491985	D	Signal peptide predicted for TA20315 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.964 between residues 17 and 18; uncharacterized protein	1491401..1491985	Theileria annulata	3863661
TA20320	CDS	TA20320	NC_011129.2	1492470	1494095	R	5 probable transmembrane helices predicted for TA20320 by TMHMM2.0 at aa 355-377, 390-412, 427-446, 458-480 and 506-528; integral membrane protein, putative	complement(1492470..1494095)	Theileria annulata	3863662
TA20325	CDS	TA20325	NC_011129.2	1494758	1496176	R	6 probable transmembrane helices predicted for TA20325 by TMHMM2.0 at aa 10-29, 34-56, 69-88, 93-115, 120-142 and 359-381; Signal anchor predicted for TA20325 by SignalP 2.0 HMM (Signal peptide probability 0.194, signal anchor probability 0.794) with cleavage site probability 0.099 between residues 26 and 27; integral membrane protein, putative	complement(1494758..1496176)	Theileria annulata	3863663
TA20330	CDS	TA20330	NC_011129.2	1497309	1498919	R	1 probable transmembrane helix predicted for TA20330 by TMHMM2.0 at aa 513-535; choline kinase, putative	complement(1497309..1498919)	Theileria annulata	3863664
TA20335	CDS	TA20335	NC_011129.2	1500436	1502768	R	uncharacterized protein	complement(join(1500436..1501988,1502031..1502125,1502193..1502244,1502303..1502768))	Theileria annulata	3863665
TA20340	CDS	TA20340	NC_011129.2	1502979	1509497	D	ATP-dependent helicase, putative	join(1502979..1503065,1503154..1503301,1503574..1503686,1503946..1504498,1504835..1505715,1506082..1506138,1506335..1506572,1506913..1507119,1507318..1507377,1507487..1507733,1508063..1508192,1508264..1508494,1508725..1508967,1509210..1509497)	Theileria annulata	3863666
TA20345	CDS	TA20345	NC_011129.2	1509684	1510809	R	1 probable transmembrane helix predicted for TA20345 by TMHMM2.0 at aa 83-105; putative transcription initiation protein spt4-like, putatve	complement(join(1509684..1509763,1509876..1510113,1510183..1510325,1510348..1510502,1510535..1510598,1510797..1510809))	Theileria annulata	3863667
TA20350	CDS	TA20350	NC_011129.2	1510972	1512354	D	4 probable transmembrane helices predicted for TA20350 by TMHMM2.0 at aa 302-324, 384-406, 416-435 and 442-459; uncharacterized protein	1510972..1512354	Theileria annulata	3863668
TA20355	CDS	TA20355	NC_011129.2	1512443	1513739	D	uncharacterized protein	join(1512443..1512578,1512671..1512903,1513088..1513156,1513371..1513739)	Theileria annulata	3863669
TA20360	CDS	TA20360	NC_011129.2	1514463	1518368	R	Phosphoinositide 3-kinase-like protein, putative	complement(join(1514463..1517861,1517895..1518223,1518269..1518368))	Theileria annulata	3863670
TA20365	CDS	TA20365	NC_011129.2	1518657	1519364	R	uncharacterized protein	complement(join(1518657..1518940,1518983..1519364))	Theileria annulata	3863671
TA20370	CDS	TA20370	NC_011129.2	1519482	1520696	D	uncharacterized protein	join(1519482..1519944,1519990..1520696)	Theileria annulata	3863672
TA20375	CDS	TA20375	NC_011129.2	1521088	1521957	D	uncharacterized protein	1521088..1521957	Theileria annulata	3863673
TA20380	CDS	TA20380	NC_011129.2	1522517	1523429	D	7 probable transmembrane helices predicted for TA20380 by TMHMM2.0 at aa 45-64, 71-93, 103-125, 132-154, 164-186, 193-215 and 228-250; transmembrane protein	join(1522517..1522574,1522643..1522743,1522830..1523429)	Theileria annulata	3863674
TA20385	CDS	TA20385	NC_011129.2	1523672	1524708	D	7 probable transmembrane helices predicted for TA20385 by TMHMM2.0 at aa 73-95, 105-126, 133-152, 162-179, 191-213, 218-240 and 253-275; transmembrane protein	join(1523672..1523819,1523869..1524285,1524440..1524708)	Theileria annulata	3863488
TA20390	CDS	TA20390	NC_011129.2	1524820	1528051	R	uncharacterized protein	complement(join(1524820..1525910,1525956..1527918,1528043..1528051))	Theileria annulata	3863489
TA20395	CDS	TA20395	NC_011129.2	1528233	1529171	D	1 probable transmembrane helix predicted for TA20395 by TMHMM2.0 at aa 202-224; uncharacterized protein	join(1528233..1528590,1528696..1528794,1528825..1529171)	Theileria annulata	3863490
TA20400	CDS	TA20400	NC_011129.2	1529277	1530219	R	uncharacterized protein	complement(join(1529277..1529847,1529906..1530219))	Theileria annulata	3863491
TA20405	CDS	TA20405	NC_011129.2	1531085	1533641	D	elongation factor 2, putative	join(1531085..1533244,1533324..1533641)	Theileria annulata	3863492
TA20410	CDS	TA20410	NC_011129.2	1533832	1534719	D	uncharacterized protein	join(1533832..1533955,1534075..1534173,1534219..1534504,1534563..1534719)	Theileria annulata	3863493
TA20415	CDS	TA20415	NC_011129.2	1534756	1537754	D	sir2-like histone deacetylase, putative	join(1534756..1534918,1535002..1535631,1535670..1536244,1536336..1537754)	Theileria annulata	3863494
TA20420	CDS	TA20420	NC_011129.2	1537869	1538585	R	very weak SMART hit (4.19e+00) to t-SNARE; 1 probable transmembrane helix predicted for TA20420 by TMHMM2.0 at aa 191-213; uncharacterized protein	complement(join(1537869..1538144,1538205..1538585))	Theileria annulata	3863495
TA20425	CDS	TA20425	NC_011129.2	1539077	1539912	D	uncharacterized protein	join(1539077..1539745,1539799..1539912)	Theileria annulata	3863496
TA20430	CDS	TA20430	NC_011129.2	1539972	1541023	R	1 probable transmembrane helix predicted for TA20430 by TMHMM2.0 at aa 31-50; Signal anchor predicted for TA20430 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.777) with cleavage site probability 0.015 between residues 48 and 49; uncharacterized protein	complement(join(1539972..1540363,1540426..1540485,1540639..1540700,1540820..1540901,1540933..1541023))	Theileria annulata	3863497
TA20435	CDS	TA20435	NC_011129.2	1541335	1542173	R	Signal peptide predicted for TA20435 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.002) with cleavage site probability 0.787 between residues 22 and 23; uncharacterized protein	complement(join(1541335..1541715,1541794..1541960,1542059..1542173))	Theileria annulata	3863498
TA20440	CDS	TA20440	NC_011129.2	1542891	1543750	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA20440 by TMHMM2.0 at aa 4-26, 143-165 and 223-240; Signal peptide predicted for TA20440 by SignalP 2.0 HMM (Signal peptide probability 0.957, signal anchor probability 0.001) with cleavage site probability 0.615 between residues 22 and 23; uncharacterized protein	join(1542891..1542938,1542971..1543030,1543118..1543750)	Theileria annulata	3863499
TA20445	CDS	TA20445	NC_011129.2	1543844	1547767	R	long-chain-fatty-acid--coa ligase 5, putative	complement(join(1543844..1544905,1544940..1545158,1545257..1545385,1545469..1545558,1545589..1545676,1545707..1545796,1545894..1546045,1546075..1546169,1546230..1546601,1546670..1547002,1547082..1547425,1547486..1547570,1547722..1547767))	Theileria annulata	3863500
TA20450	CDS	TA20450	NC_011129.2	1548380	1548790	D	uncharacterized protein	1548380..1548790	Theileria annulata	3863501
TA20455	CDS	TA20455	NC_011129.2	1549092	1550436	D	Contains putative signal peptide; uncharacterized protein	join(1549092..1549750,1549785..1549918,1550019..1550179,1550251..1550436)	Theileria annulata	3863502
TA20460	CDS	TA20460	NC_011129.2	1550552	1552833	R	tryptophanyl-trna synthetase, putative	complement(join(1550552..1550635,1550665..1550867,1550948..1551155,1551230..1551636,1551703..1551857,1551960..1552195,1552226..1552349,1552405..1552514,1552545..1552637,1552720..1552833))	Theileria annulata	3863503
TA20465	CDS	TA20465	NC_011129.2	1553161	1553800	D	uncharacterized protein	join(1553161..1553302,1553411..1553596,1553631..1553800)	Theileria annulata	3863504
TA20470	CDS	TA20470	NC_011129.2	1553937	1556251	R	Significant similarity to 1-deoxy-D-xylulose 5-phosphate synthases of several prokaryotic origin; 1-deoxy-D-xylulose 5-phosphate synthase, putative	complement(join(1553937..1554062,1554092..1556251))	Theileria annulata	3863505
TA20475	CDS	TA20475	NC_011129.2	1556540	1559418	D	Shows significant Pfam hit (2.7e-08) to Peptidase_M3 family domain; endopeptidase, putative	join(1556540..1556982,1557015..1557108,1557153..1557272,1557321..1557472,1557503..1557563,1557613..1557704,1557747..1557813,1557843..1558083,1558116..1558552,1558590..1558659,1558688..1558845,1558879..1559075,1559105..1559189,1559222..1559290,1559353..1559418)	Theileria annulata	3863506
TA20480	CDS	TA20480	NC_011129.2	1559585	1561356	D	Contains several Ankyrin repeat elements; Ankyrin repeat protein, putative	join(1559585..1560151,1560195..1560545,1560625..1560930,1560990..1561112,1561177..1561356)	Theileria annulata	3863507
TA20485	CDS	TA20485	NC_011129.2	1561680	1562452	D	myosin a tail domain interacting protein mtip, putative	join(1561680..1561889,1561975..1562220,1562294..1562452)	Theileria annulata	3864093
TA20490	CDS	TA20490	NC_011129.2	1562526	1563164	D	4 probable transmembrane helices predicted for TA20490 by TMHMM2.0 at aa 30-49, 61-83, 98-120 and 141-163; integral membrane protein, putative	join(1562526..1562722,1562768..1562878,1562939..1563164)	Theileria annulata	3864094
TA20495	CDS	TA20495	NC_011129.2	1563210	1568496	R	Shows weak similarity to PHD (2.56e-02), RING finger (7.87e-01) and SET (9.3e-02) SMART domains; zinc finger protein with SET domain, putative	complement(join(1563210..1563634,1563700..1563848,1563890..1568496))	Theileria annulata	3864095
TA20500	CDS	TA20500	NC_011129.2	1569755	1570723	R	uncharacterized protein	complement(join(1569755..1569901,1569973..1570035,1570140..1570331,1570361..1570507,1570548..1570622,1570682..1570723))	Theileria annulata	3864096
TA20505	CDS	TA20505	NC_011129.2	1571187	1573320	D	1 probable transmembrane helix predicted for TA20505 by TMHMM2.0 at aa 520-542; Signal peptide predicted for TA20505 by SignalP 2.0 HMM (Signal peptide probability 0.675, signal anchor probability 0.000) with cleavage site probability 0.597 between residues 19 and 20; uncharacterized protein	join(1571187..1571240,1571330..1571831,1571895..1571980,1572056..1572427,1572507..1572736,1572807..1572897,1572940..1573320)	Theileria annulata	3864097
TA20510	CDS	TA20510	NC_011129.2	1573382	1573943	R	ubiquitin-conjugating enzyme e2, putative	complement(join(1573382..1573788,1573892..1573943))	Theileria annulata	3864098
TA20515	CDS	TA20515	NC_011129.2	1574261	1577672	D	DNA replication licensing factor Mcm2, putative	join(1574261..1574969,1575068..1575946,1576088..1576361,1576475..1577672)	Theileria annulata	3864099
TA20520	CDS	TA20520	NC_011129.2	1577734	1578527	R	2 probable transmembrane helices predicted for TA20520 by TMHMM2.0 at aa 4-23 and 183-205; Signal peptide predicted for TA20520 by SignalP 2.0 HMM (Signal peptide probability 0.988, signal anchor probability 0.000) with cleavage site probability 0.574 between residues 19 and 20; uncharacterized protein	complement(join(1577734..1577982,1578035..1578195,1578229..1578309,1578371..1578527))	Theileria annulata	3864100
TA20525	CDS	TA20525	NC_011129.2	1578760	1579626	D	ribosomal protein s12, putative	1578760..1579626	Theileria annulata	3864101
TA20530	CDS	TA20530	NC_011129.2	1579714	1580178	R	uncharacterized protein	complement(1579714..1580178)	Theileria annulata	3864102
TA20535	CDS	TA20535	NC_011129.2	1580417	1583212	R	Moderate Pfam hit (7.4e-05) to TPR domain; peptidylprolyl isomerase-like protein, putative	complement(join(1580417..1580564,1580754..1580827,1580947..1581813,1581914..1582048,1582110..1582211,1582242..1582510,1582584..1582890,1582943..1583021,1583058..1583212))	Theileria annulata	3864103
TA20540	CDS	TA20540	NC_011129.2	1583415	1584981	D	riboflavin kinase / fad synthase family protein, putative	join(1583415..1584072,1584104..1584238,1584275..1584347,1584380..1584457,1584518..1584645,1584686..1584981)	Theileria annulata	3864104
TA20545	CDS	TA20545	NC_011129.2	1585032	1585563	R	ribosomal protein s15, putative	complement(join(1585032..1585252,1585329..1585563))	Theileria annulata	3864105
TA20550	CDS	TA20550	NC_011129.2	1585772	1586432	R	uncharacterized protein	complement(join(1585772..1586124,1586187..1586274,1586325..1586432))	Theileria annulata	3864106
TA20555	CDS	TA20555	NC_011129.2	1587198	1589860	R	myosin a, putative	complement(join(1587198..1589435,1589560..1589694,1589762..1589860))	Theileria annulata	3864107
TA20560	CDS	TA20560	NC_011129.2	1590974	1592554	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA20560 by SignalP 2.0 HMM (Signal peptide probability 0.632, signal anchor probability 0.000) with cleavage site probability 0.426 between residues 18 and 19; uncharacterized protein	join(1590974..1591244,1591425..1591889,1591956..1592011,1592088..1592200,1592464..1592554)	Theileria annulata	3864108
TA20565	CDS	TA20565	NC_011129.2	1592612	1593306	D	uncharacterized protein	join(1592612..1592719,1592760..1592797,1592840..1592940,1593004..1593081,1593155..1593306)	Theileria annulata	3864109
TA20570	CDS	TA20570	NC_011129.2	1593354	1593728	D	uncharacterized protein	1593354..1593728	Theileria annulata	3864110
TA20575	CDS	TA20575	NC_011129.2	1593981	1596062	R	Weak Pfam hit (8.7e-03) to endonuclease/exonuclease/phosphatase family; product call is based on the Pfam match; enzyme, putative	complement(1593981..1596062)	Theileria annulata	3864111
TA20580	CDS	TA20580	NC_011129.2	1597693	1599240	D	ribonucleoprotein, putative	1597693..1599240	Theileria annulata	3864347
TA20585	CDS	TA20585	NC_011129.2	1599390	1603054	R	1 probable transmembrane helix predicted for TA20585 by TMHMM2.0 at aa 163-185; exosome complex exonuclease rrp44, putative	complement(join(1599390..1599626,1599691..1599792,1599879..1600055,1600114..1600222,1600379..1600536,1600567..1600638,1600687..1600786,1600867..1601016,1601131..1601440,1601507..1602403,1602438..1602827,1602889..1603054))	Theileria annulata	3864348
TA20590	CDS	TA20590	NC_011129.2	1603699	1605680	D	phosphoenolpyruvate carboxykinase, putative	join(1603699..1603839,1603912..1604032,1604121..1604474,1604554..1605680)	Theileria annulata	3864349
TA20595	CDS	TA20595	NC_011129.2	1605861	1608115	R	uncharacterized protein	complement(join(1605861..1606225,1606324..1608115))	Theileria annulata	3864350
TA20600	CDS	TA20600	NC_011129.2	1608756	1610581	D	Not conserved protein length-wise in the N-terminal end; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA20600 by TMHMM2.0 at aa 5-27 and 34-56; Signal anchor predicted for TA20600 by SignalP 2.0 HMM (Signal peptide probability 0.015, signal anchor probability 0.788) with cleavage site probability 0.004 between residues 25 and 26; uncharacterized protein	join(1608756..1609833,1610031..1610581)	Theileria annulata	3864351
TA20605	CDS	TA20605	NC_011129.2	1610691	1612382	R	udp-N-acetylglucosamine pyrophosphorylase, putative	complement(join(1610691..1610927,1611004..1612309,1612354..1612382))	Theileria annulata	3864352
TA20610	CDS	TA20610	NC_011129.2	1612814	1614730	R	protein with kelch domain	complement(join(1612814..1613693,1613759..1614195,1614359..1614730))	Theileria annulata	3864353
TA20615	CDS	TA20615	NC_011129.2	1614983	1616455	R	Contains putative signal peptide; 1 probable transmembrane helix predicted for TA20615 by TMHMM2.0 at aa 13-35; Signal peptide predicted for TA20615 by SignalP 2.0 HMM (Signal peptide probability 0.779, signal anchor probability 0.216) with cleavage site probability 0.151 between residues 39 and 40; GPI-Anchor Signal predicted for TA20615 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(1614983..1616455)	Theileria annulata	3864354
TA20620	CDS	TA20620	NC_011129.2	1616534	1632411	R	1 probable transmembrane helix predicted for TA20620 by TMHMM2.0 at aa 5113-5135; uncharacterized protein	complement(join(1616534..1616914,1616945..1617657,1617719..1623292,1623405..1629101,1629165..1629540,1629612..1631918,1631952..1632162,1632233..1632411))	Theileria annulata	3864355
TA20625	CDS	TA20625	NC_011129.2	1632970	1634841	D	u4/u6 small nuclear ribonucleoprotein, putative	join(1632970..1633022,1633096..1633125,1633290..1634841)	Theileria annulata	3864356
TA20630	CDS	TA20630	NC_011129.2	1634910	1637945	R	20 probable transmembrane helices predicted for TA20630 by TMHMM2.0 at aa 107-129, 133-155, 162-184, 218-240, 293-315, 325-347, 381-398, 402-424, 444-466, 495-517, 524-546, 556-574, 581-603, 618-640, 652-674, 704-726, 728-750, 765-787, 800-822 and 946-968; integral membrane protein, putative	complement(join(1634910..1636316,1636347..1636686,1636723..1637294,1637328..1637945))	Theileria annulata	3864357
TA20635	CDS	TA20635	NC_011129.2	1638315	1640494	D	glycine cleavage complex t-protein, putative	join(1638315..1638960,1639003..1639359,1639390..1639474,1639504..1639725,1639755..1639920,1639952..1640494)	Theileria annulata	3864358
TA20640	CDS	TA20640	NC_011129.2	1640776	1643895	D	Signal peptide predicted for TA20640 by SignalP 2.0 HMM (Signal peptide probability 0.621, signal anchor probability 0.018) with cleavage site probability 0.310 between residues 18 and 19; HSP70 chaperone, putative	1640776..1643895	Theileria annulata	3864359
TA20645	CDS	TA20645	NC_011129.2	1644071	1646422	R	FHA domain protein, putative	complement(1644071..1646422)	Theileria annulata	3864360
TA20650	CDS	TA20650	NC_011129.2	1648701	1649944	D	1 probable transmembrane helix predicted for TA20650 by TMHMM2.0 at aa 9-31; aspartate transcarbamoylase, putative	join(1648701..1649507,1649579..1649767,1649807..1649944)	Theileria annulata	3864361
TA20655	CDS	TA20655	NC_011129.2	1650068	1650695	R	protein, thioredoxin-like	complement(join(1650068..1650283,1650312..1650337,1650377..1650648,1650679..1650695))	Theileria annulata	3864362
TA20660	CDS	TA20660	NC_011129.2	1651055	1653771	D	uncharacterized protein	join(1651055..1652996,1653054..1653423,1653454..1653571,1653679..1653771)	Theileria annulata	3864363
TA20665	CDS	TA20665	NC_011129.2	1653810	1654779	D	uncharacterized protein	join(1653810..1653885,1653920..1654199,1654230..1654332,1654364..1654465,1654495..1654779)	Theileria annulata	3864364
TA20670	CDS	TA20670	NC_011129.2	1654948	1655641	D	uncharacterized protein	join(1654948..1655110,1655221..1655291,1655322..1655477,1655507..1655641)	Theileria annulata	3864365
TA20675	CDS	TA20675	NC_011129.2	1655726	1656588	R	Signal peptide predicted for TA20675 by SignalP 2.0 HMM (Signal peptide probability 0.874, signal anchor probability 0.001) with cleavage site probability 0.846 between residues 19 and 20; thioredoxin-like protein, putative	complement(join(1655726..1655935,1656116..1656307,1656346..1656588))	Theileria annulata	3864366
TA20680	CDS	TA20680	NC_011129.2	1656786	1658418	R	3 probable transmembrane helices predicted for TA20680 by TMHMM2.0 at aa 394-416, 423-445 and 460-478; integral membrane protein, rhomboid family	complement(join(1656786..1657234,1657291..1657455,1657497..1658418))	Theileria annulata	3863945
TA20685	CDS	TA20685	NC_011129.2	1658762	1659110	R	1 probable transmembrane helix predicted for TA20685 by TMHMM2.0 at aa 51-73; uncharacterized protein	complement(join(1658762..1658794,1658828..1658923,1658958..1659110))	Theileria annulata	3863946
TA20690	CDS	TA20690	NC_011129.2	1659243	1661550	R	Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA20690 by TMHMM2.0 at aa 12-31; uncharacterized protein	complement(join(1659243..1659366,1659400..1659651,1659684..1659874,1659908..1659998,1660035..1660169,1660223..1660290,1660320..1660411,1660444..1661223,1661253..1661550))	Theileria annulata	3863947
TA20695	CDS	TA20695	NC_011129.2	1662177	1663376	D	uncharacterized protein	1662177..1663376	Theileria annulata	3863948
TA20700	CDS	TA20700	NC_011129.2	1663831	1671728	D	uncharacterized protein	join(1663831..1671226,1671439..1671728)	Theileria annulata	3863949
TA20705	CDS	TA20705	NC_011129.2	1671897	1673795	D	histone acetyltransferase gcn5-related, putative	1671897..1673795	Theileria annulata	3863950
TA20710	CDS	TA20710	NC_011129.2	1674029	1674894	R	Conserved C-terminus; uncharacterized protein	complement(join(1674029..1674424,1674523..1674894))	Theileria annulata	3863951
TA20715	CDS	TA20715	NC_011129.2	1675144	1677534	D	glycyl-tRNA synthetase	1675144..1677534	Theileria annulata	3863952
TA20720	CDS	TA20720	NC_011129.2	1677793	1678543	R	uncharacterized protein	complement(join(1677793..1677863,1677893..1677991,1678029..1678101,1678193..1678543))	Theileria annulata	3863953
TA20725	CDS	TA20725	NC_011129.2	1679089	1683757	D	uncharacterized protein	join(1679089..1679223,1679281..1679570,1679669..1679912,1680026..1683269,1683357..1683757)	Theileria annulata	3863954
TA20730	CDS	TA20730	NC_011129.2	1684045	1684477	D	uncharacterized protein	join(1684045..1684290,1684334..1684477)	Theileria annulata	3863955
TA20735	CDS	TA20735	NC_011129.2	1684599	1686990	D	DNA mismatch repair protein msh2, putative	join(1684599..1684809,1684895..1686015,1686091..1686206,1686259..1686373,1686431..1686533,1686565..1686710,1686847..1686990)	Theileria annulata	3863956
TA20740	CDS	TA20740	NC_011129.2	1695726	1697608	R	uncharacterized protein	complement(join(1695726..1697203,1697260..1697608))	Theileria annulata	3863957
TA20745	CDS	TA20745	NC_011129.2	1697767	1698454	D	small overlap at the 3' end with gene TA20750; uncharacterized protein	join(1697767..1697853,1697911..1698196,1698225..1698454)	Theileria annulata	3863958
TA20750	CDS	TA20750	NC_011129.2	1698438	1699834	R	small overlap at the 3' end with gene TA20745; trna delta (2)-isopentenylpyrophosphate transferase, putative	complement(join(1698438..1698736,1698852..1698894,1698926..1699010,1699082..1699292,1699343..1699448,1699480..1699617,1699670..1699773,1699807..1699834))	Theileria annulata	3863959
TA20755	CDS	TA20755	NC_011129.2	1699938	1701446	R	uncharacterized protein	complement(join(1699938..1700093,1700126..1700167,1700197..1700260,1700379..1700530,1700560..1700612,1700645..1700738,1700771..1700815,1700846..1700909,1700941..1701017,1701054..1701134,1701167..1701229,1701282..1701365,1701414..1701446))	Theileria annulata	3863960
TA20760	CDS	TA20760	NC_011129.2	1701970	1702617	R	uncharacterized protein	complement(1701970..1702617)	Theileria annulata	3863961
TA20765	CDS	TA20765	NC_011129.2	1702800	1703391	D	1 probable transmembrane helix predicted for TA20765 by TMHMM2.0 at aa 13-30; uncharacterized protein	join(1702800..1703138,1703197..1703391)	Theileria annulata	3863962
TA20770	CDS	TA20770	NC_011129.2	1703509	1711455	D	uncharacterized protein	join(1703509..1703608,1703674..1703930,1703964..1704079,1704109..1704282,1704313..1710217,1710268..1711455)	Theileria annulata	3863963
TA20775	CDS	TA20775	NC_011129.2	1711587	1713037	R	dihydrofolate synthase/folylpolyglutamate synthase, putative	complement(join(1711587..1711686,1711722..1711930,1711964..1712192,1712232..1712445,1712478..1712613,1712653..1712804,1712842..1713037))	Theileria annulata	3863568
TA20780	CDS	TA20780	NC_011129.2	1713158	1714459	R	Conserved amino acids present but the matches are not throughout the length of the matching proteins; uncharacterized protein	complement(join(1713158..1713517,1713548..1713621,1713650..1713793,1713823..1714269,1714306..1714382,1714416..1714459))	Theileria annulata	3863569
TA20781	CDS	TA20781	NC_011129.2	1714883	1719172	D	Signal peptide predicted for TA20781 by SignalP 2.0 HMM (Signal peptide probability 0.932, signal anchor probability 0.000) with cleavage site probability 0.797 between residues 21 and 22; GPI-Anchor Signal predicted for TA20781 by DGPI v2.04, no cleavage site predicted; cysteine repeat modular protein	1714883..1719172	Theileria annulata	3863570
TA20782	CDS	TA20782	NC_011129.2	1719243	1723344	D	8 probable transmembrane helices predicted for TA20782 by TMHMM2.0 at aa 580-597, 609-631, 701-723, 775-797, 822-844, 902-919, 953-975 and 1070-1087; cysteine repeat modular protein	join(1719243..1719774,1719815..1723344)	Theileria annulata	3863571
TA20783	CDS	TA20783	NC_011129.2	1726361	1734434	D	8 probable transmembrane helices predicted for TA20783 by TMHMM2.0 at aa 2038-2060, 2067-2089, 2137-2159, 2187-2209, 2243-2265, 2291-2310, 2320-2342 and 2354-2376; cysteine repeat modular protein	join(1726361..1726991,1727027..1733561,1733693..1734434)	Theileria annulata	3863572
TA20790	CDS	TA20790	NC_011129.2	1735524	1737143	D	Signal peptide predicted for TA20790 by SignalP 2.0 HMM (Signal peptide probability 0.660, signal anchor probability 0.000) with cleavage site probability 0.462 between residues 17 and 18; uncharacterized protein	1735524..1737143	Theileria annulata	3863573
TA20795	CDS	TA20795	NC_011129.2	1737190	1740345	R	uncharacterized protein	complement(join(1737190..1738783,1738863..1739092,1739186..1739784,1739853..1740345))	Theileria annulata	3863574
TA20800	CDS	TA20800	NC_011129.2	1742511	1747667	D	uncharacterized protein	join(1742511..1743723,1743867..1744256,1744319..1744705,1744759..1747028,1747203..1747667)	Theileria annulata	3863575
TA20805	CDS	TA20805	NC_011129.2	1747712	1749482	D	uncharacterized protein	join(1747712..1748017,1748115..1749482)	Theileria annulata	3863576
TA20810	CDS	TA20810	NC_011129.2	1749560	1750240	R	protein CGI-126, putative	complement(join(1749560..1749622,1749653..1749820,1749953..1750016,1750047..1750240))	Theileria annulata	3863577
TA20815	CDS	TA20815	NC_011129.2	1750530	1752032	R	Similarity to tata-box binding proteins of several bacteria & 2 malaria species; tata box binding protein, putative	complement(join(1750530..1750817,1750969..1751495,1751642..1752032))	Theileria annulata	3863578
TA20820	CDS	TA20820	NC_011129.2	1752708	1753669	R	peptide chain release factor 1, mitochondrial precursor, putative	complement(join(1752708..1752848,1752878..1753048,1753185..1753263,1753417..1753516,1753576..1753669))	Theileria annulata	3863579
TA20825	CDS	TA20825	NC_011129.2	1753953	1758284	R	Weak hit to serine-threonine protein kinase domain; serine-threonine protein kinase, putative	complement(join(1753953..1755512,1755603..1758284))	Theileria annulata	3863580
TA20830	CDS	TA20830	NC_011129.2	1758913	1762032	D	1 probable transmembrane helix predicted for TA20830 by TMHMM2.0 at aa 12-34; uncharacterized protein	1758913..1762032	Theileria annulata	3863581
TA20835	CDS	TA20835	NC_011129.2	1762874	1765085	D	uncharacterized protein	join(1762874..1763870,1763952..1764053,1764145..1765085)	Theileria annulata	3863582
TA20840	CDS	TA20840	NC_011129.2	1765352	1769421	R	Contains possible TPR repeat domains; uncharacterized protein	complement(join(1765352..1765444,1765494..1765631,1765881..1766243,1766329..1766385,1766420..1766521,1766647..1766926,1766991..1767082,1767116..1767205,1767239..1767273,1767313..1767441,1767525..1767650,1767716..1768316,1768405..1768636,1768673..1769421))	Theileria annulata	3863583
TA20845	CDS	TA20845	NC_011129.2	1769616	1771075	D	ribosomal protein s15, mitochondrial precursor, putative	join(1769616..1769967,1770150..1770317,1770347..1770396,1770489..1770555,1770587..1770679,1770743..1770868,1771011..1771075)	Theileria annulata	3863584
TA20850	CDS	TA20850	NC_011129.2	1771190	1771723	D	ribosomal protein l6, putative	1771190..1771723	Theileria annulata	3863585
TA20855	CDS	TA20855	NC_011129.2	1772076	1773436	R	Part similarity to Plasmodium yoelii (SWALL:EAA20932) and Plasmodium falciparum (SWALL:Q8IE86) hypothetical proteins; Contains a putative signal peptide; Signal peptide predicted for TA20855 by SignalP 2.0 HMM (Signal peptide probability 0.935, signal anchor probability 0.000) with cleavage site probability 0.688 between residues 22 and 23; GPI-Anchor Signal predicted for TA20855 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(1772076..1772498,1772528..1772593,1772663..1772764,1772824..1772863,1772913..1772939,1772971..1772992,1773029..1773070,1773265..1773436))	Theileria annulata	3863586
TA20860	CDS	TA20860	NC_011129.2	1773640	1774075	R	uncharacterized protein	complement(join(1773640..1773822,1773908..1774075))	Theileria annulata	3863587
TA20865	CDS	TA20865	NC_011129.2	1774268	1775486	D	uncharacterized protein	join(1774268..1774864,1774917..1775486)	Theileria annulata	3863811
TA20870	CDS	TA20870	NC_011129.2	1775618	1778395	R	Signal peptide predicted for TA20870 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.895 between residues 22 and 23; uncharacterized protein	complement(1775618..1778395)	Theileria annulata	3863812
TA20875	CDS	TA20875	NC_011129.2	1779255	1784849	R	uncharacterized protein	complement(join(1779255..1779630,1779718..1779785,1779855..1779956,1779995..1781921,1781981..1782085,1782166..1784849))	Theileria annulata	3863813
TA20880	CDS	TA20880	NC_011129.2	1785396	1787415	D	uncharacterized protein	join(1785396..1785605,1785645..1786567,1786607..1786716,1786747..1786891,1786947..1787415)	Theileria annulata	3863814
TA20885	CDS	TA20885	NC_011129.2	1787510	1791126	R	Contains several (12) putative transmembrane domains; 12 probable transmembrane helices predicted for TA20885 by TMHMM2.0 at aa 164-182, 204-226, 231-250, 255-277, 290-312, 322-339, 418-440, 455-477, 484-506, 511-533, 571-590 and 600-622; transporter, putative	complement(join(1787510..1788514,1788573..1788743,1788852..1788919,1789000..1789728,1789867..1790663,1791017..1791126))	Theileria annulata	3863815
TA20890	CDS	TA20890	NC_011129.2	1791581	1793176	D	Shows weak hit (8.03e-03) to Pfam LON domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA20890 by SignalP 2.0 HMM (Signal peptide probability 0.924, signal anchor probability 0.011) with cleavage site probability 0.549 between residues 25 and 26; uncharacterized protein	join(1791581..1792390,1792472..1793176)	Theileria annulata	3863816
TA20895	CDS	TA20895	NC_011129.2	1793278	1794892	D	uncharacterized protein	join(1793278..1793334,1793367..1793460,1793550..1793657,1793690..1793725,1793827..1793987,1794028..1794422,1794559..1794892)	Theileria annulata	3863817
TA20900	CDS	TA20900	NC_011129.2	1794978	1795942	D	acidic leucine-rich nuclear phosphoprotein 32 family, putative	join(1794978..1795349,1795409..1795631,1795681..1795785,1795821..1795942)	Theileria annulata	3863818
TA20905	CDS	TA20905	NC_011129.2	1796100	1797102	D	exosome complex exonuclease rrp41, putative	join(1796100..1796255,1796364..1796709,1796740..1796810,1796938..1797102)	Theileria annulata	3863819
TA20910	CDS	TA20910	NC_011129.2	1797505	1800514	R	aminopeptidase n, putative	complement(join(1797505..1798925,1799014..1800514))	Theileria annulata	3863820
TA20915	CDS	TA20915	NC_011129.2	1800868	1804056	R	Contains a putative signal peptide; putative ribonuclease ii family protein	complement(1800868..1804056)	Theileria annulata	3863821
TA20920	CDS	TA20920	NC_011129.2	1804162	1805015	D	Significantly similar to a conserved protein annotated as 'developmental protein' in plants; uncharacterized protein	join(1804162..1804224,1804375..1804581,1804656..1804766,1804824..1805015)	Theileria annulata	3863822
TA20925	CDS	TA20925	NC_011129.2	1805252	1808387	D	Contains putative WD40 domains; beta subunit of coatomer complex, putative	join(1805252..1806440,1806494..1806582,1806696..1807857,1807890..1807999,1808071..1808181,1808226..1808387)	Theileria annulata	3863823
TA20930	CDS	TA20930	NC_011129.2	1809490	1810137	D	Signal peptide predicted for TA20930 by SignalP 2.0 HMM (Signal peptide probability 0.866, signal anchor probability 0.133) with cleavage site probability 0.736 between residues 33 and 34; uncharacterized protein	1809490..1810137	Theileria annulata	3863824
TA20935	CDS	TA20935	NC_011129.2	1810428	1812490	D	uncharacterized protein	join(1810428..1810530,1810604..1810767,1810799..1812490)	Theileria annulata	3863825
TA20940	CDS	TA20940	NC_011129.2	1812662	1814443	D	Later start possible using a downstream methionine codon in the exon I; 1 probable transmembrane helix predicted for TA20940 by TMHMM2.0 at aa 9-27; at4g32520/f8b4_220	join(1812662..1812943,1812987..1813444,1813504..1813804,1813885..1814239,1814328..1814443)	Theileria annulata	3863826
TA20945	CDS	TA20945	NC_011129.2	1814697	1816625	D	ATP synthase beta chain, mitochondrial precursor, putative	join(1814697..1815618,1815722..1816288,1816363..1816625)	Theileria annulata	3863827
TA20955	CDS	TA20955	NC_011129.2	1817361	1819401	R	Weak SMART hit (e=0.08) to MIF4G domain, found in eIF4G and other rna-binding proteins; rna-binding protein, putative	complement(join(1817361..1817649,1817687..1817765,1817830..1817916,1817964..1818222,1818276..1818425,1818456..1819261,1819299..1819401))	Theileria annulata	3863828
TA20960	CDS	TA20960	NC_011129.2	1820144	1826174	D	DNA polymerase i, putative	join(1820144..1820208,1820304..1820947,1821017..1822306,1822398..1824734,1824817..1825038,1825100..1825317,1825434..1825473,1825527..1825735,1825769..1825861,1825902..1826033,1826064..1826174)	Theileria annulata	3863829
TA20965	CDS	TA20965	NC_011129.2	1826909	1828320	D	Shows weak Pfam hit (5.8e-03) to Rhomboid family protein domain; 5 probable transmembrane helices predicted for TA20965 by TMHMM2.0 at aa 210-232, 292-314, 329-351, 376-398 and 413-435; rhomboid family integral membrane protein, putative	join(1826909..1827626,1827722..1828320)	Theileria annulata	3863715
TA20970	CDS	TA20970	NC_011129.2	1828962	1831127	D	Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA20970 by TMHMM2.0 at aa 358-380; uncharacterized protein	join(1828962..1830030,1830066..1830910,1830978..1831127)	Theileria annulata	3863716
TA20975	CDS	TA20975	NC_011129.2	1831250	1832140	R	deoxyuridine 5'-triphosphate nucleotidohydrolase, putative	complement(join(1831250..1831312,1831342..1831478,1831570..1831896,1831937..1831964,1832084..1832140))	Theileria annulata	3863717
TA20980	CDS	TA20980	NC_011129.2	1832296	1835299	R	Contains a putative signal peptide; Signal peptide predicted for TA20980 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.982 between residues 19 and 20; uncharacterized protein	complement(join(1832296..1833461,1833496..1835299))	Theileria annulata	3863718
TA20985	CDS	TA20985	NC_011129.2	1835818	1836483	R	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA20985 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.834 between residues 19 and 20; uncharacterized protein	complement(1835818..1836483)	Theileria annulata	3863719
TA20990	CDS	TA20990	NC_011129.2	1837225	1837749	R	Signal peptide predicted for TA20990 by SignalP 2.0 HMM (Signal peptide probability 0.995, signal anchor probability 0.000) with cleavage site probability 0.837 between residues 21 and 22; uncharacterized protein	complement(1837225..1837749)	Theileria annulata	3863720
TA20995	CDS	TA20995	NC_011129.2	1838179	1839417	R	1 probable transmembrane helix predicted for TA20995 by TMHMM2.0 at aa 201-223; trna (guanine-n-(7))-methyltransferase, putative	complement(join(1838179..1838283,1838351..1838638,1838679..1838747,1838777..1838833,1838887..1839028,1839142..1839260,1839325..1839417))	Theileria annulata	3863721
TA21000	CDS	TA21000	NC_011129.2	1839649	1840050	D	small nuclear ribonucleoprotein f, putative	join(1839649..1839675,1839724..1839814,1839857..1839962,1839999..1840050)	Theileria annulata	3863722
TA21005	CDS	TA21005	NC_011129.2	1840114	1841707	R	2 probable transmembrane helices predicted for tmhmm2embl_unknown_000000_1840114_1841707 by TMHMM2.0 at aa 10-32 and 44-66; Signal anchor predicted for TA21005 by SignalP 2.0 HMM (Signal peptide probability 0.037, signal anchor probability 0.861) with cleavage site probability 0.017 between residues 25 and 26; uncharacterized protein	complement(join(1840114..1840315,1840351..1840534,1840591..1840707,1840761..1840839,1840869..1841039,1841079..1841195,1841301..1841436,1841502..1841540,1841670..1841707))	Theileria annulata	3863723
TA21010	CDS	TA21010	NC_011129.2	1841819	1843707	R	ATP-dependent RNA helicase, putative	complement(join(1841819..1842104,1842136..1842273,1842306..1842383,1842416..1842611,1842663..1842740,1842771..1842938,1842986..1843103,1843133..1843257,1843315..1843374,1843408..1843500,1843536..1843707))	Theileria annulata	3863724
TA21015	CDS	TA21015	NC_011129.2	1844263	1847498	D	protein transport protein sec24-like, putative	join(1844263..1845670,1845751..1847498)	Theileria annulata	3863725
TA21020	CDS	TA21020	NC_011129.2	1847776	1849132	D	uncharacterized protein	join(1847776..1847905,1847965..1848105,1848136..1848325,1848358..1848416,1848500..1848597,1848629..1848758,1848793..1849022,1849073..1849132)	Theileria annulata	3863726
TA21025	CDS	TA21025	NC_011129.2	1849276	1850995	D	uncharacterized protein	join(1849276..1849401,1849434..1849526,1849592..1849672,1849731..1849851,1849881..1849955,1850004..1850303,1850336..1850450,1850494..1850601,1850634..1850676,1850728..1850847,1850915..1850995)	Theileria annulata	3863727
TA21030	CDS	TA21030	NC_011129.2	1851078	1852268	D	ribosomal protein l13, putative	join(1851078..1851163,1851277..1851409,1851493..1851661,1851701..1851765,1851832..1851890,1851951..1852148,1852205..1852268)	Theileria annulata	3863728
TA21035	CDS	TA21035	NC_011129.2	1852375	1853093	D	uncharacterized protein	join(1852375..1852456,1852516..1852732,1852872..1852921,1852951..1853093)	Theileria annulata	3863729
TA21040	CDS	TA21040	NC_011129.2	1853142	1853949	D	Signal peptide predicted for TA21040 by SignalP 2.0 HMM (Signal peptide probability 0.614, signal anchor probability 0.002) with cleavage site probability 0.277 between residues 15 and 16; GPI-Anchor Signal predicted for TA21040 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	join(1853142..1853511,1853570..1853723,1853775..1853949)	Theileria annulata	3863730
TA21045	CDS	TA21045	NC_011129.2	1854098	1854703	R	Contains a putative signal peptide; Signal peptide predicted for TA21045 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.962 between residues 17 and 18; uncharacterized protein	complement(1854098..1854703)	Theileria annulata	3863731
TA21050	CDS	TA21050	NC_011129.2	1855365	1856399	R	1 probable transmembrane helix predicted for TA21050 by TMHMM2.0 at aa 138-160; uncharacterized protein	complement(join(1855365..1856198,1856343..1856399))	Theileria annulata	3863732
TA21055	CDS	TA21055	NC_011129.2	1856788	1858199	R	Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA21055 by TMHMM2.0 at aa 362-384; proliferation-associated protein 2g4, putative	complement(join(1856788..1856841,1856875..1857670,1857734..1857843,1857875..1857966,1858043..1858199))	Theileria annulata	3863733
TA21060	CDS	TA21060	NC_011129.2	1858273	1858602	D	uncharacterized protein	join(1858273..1858281,1858322..1858370,1858403..1858602)	Theileria annulata	3863734
TA21065	CDS	TA21065	NC_011129.2	1858951	1859943	R	bacterial type gmp reductase; gmp reductase, putative	complement(1858951..1859943)	Theileria annulata	3864112
TA21070	CDS	TA21070	NC_011129.2	1860278	1862215	D	uncharacterized protein	join(1860278..1860637,1860668..1860800,1860831..1860917,1860988..1861085,1861125..1861372,1861413..1861460,1861503..1861567,1861597..1861679,1861711..1862034,1862093..1862215)	Theileria annulata	3864113
TA21075	CDS	TA21075	NC_011129.2	1862614	1864064	D	uncharacterized protein	join(1862614..1862861,1862898..1862990,1863022..1863090,1863156..1863324,1863357..1863471,1863543..1863639,1863680..1864064)	Theileria annulata	3864114
TA21080	CDS	TA21080	NC_011129.2	1864153	1866081	R	Map2 kinase, putative	complement(1864153..1866081)	Theileria annulata	3864115
TA21085	CDS	TA21085	NC_011129.2	1867282	1869977	D	Alternative gene structure possible; uncharacterized protein	join(1867282..1867548,1867633..1868760,1868828..1869058,1869129..1869977)	Theileria annulata	3864116
TA21090	CDS	TA21090	NC_011129.2	1870034	1870708	R	uncharacterized protein	complement(join(1870034..1870168,1870210..1870446,1870547..1870585,1870676..1870708))	Theileria annulata	3864117
TA21095	CDS	TA21095	NC_011129.2	1870870	1873006	D	actin-related protein, putative	join(1870870..1871674,1871702..1871748,1871811..1871942,1872005..1872350,1872415..1872587,1872674..1872853,1872962..1873006)	Theileria annulata	3864118
TA21100	CDS	TA21100	NC_011129.2	1873451	1875364	D	11 probable transmembrane helices predicted for TA21100 by TMHMM2.0 at aa 61-83, 145-164, 174-196, 203-225, 240-262, 431-453, 468-490, 497-514, 524-546, 551-573 and 583-605; integral membrane protein, putative	1873451..1875364	Theileria annulata	3864119
TA21105	CDS	TA21105	NC_011129.2	1875648	1877790	D	uncharacterized protein	join(1875648..1875799,1875855..1876332,1876392..1876475,1876530..1876645,1876699..1876811,1876870..1876937,1876985..1877156,1877186..1877343,1877376..1877439,1877474..1877790)	Theileria annulata	3864120
TA21110	CDS	TA21110	NC_011129.2	1878205	1878837	D	60S ribosomal protein l11a, putative	join(1878205..1878273,1878305..1878590,1878677..1878837)	Theileria annulata	3864121
TA21115	CDS	TA21115	NC_011129.2	1879318	1879782	D	ribosomal protein s18, putative	1879318..1879782	Theileria annulata	3864122
TA21120	CDS	TA21120	NC_011129.2	1879863	1881295	D	Signal peptide predicted for TA21120 by SignalP 2.0 HMM (Signal peptide probability 0.843, signal anchor probability 0.000) with cleavage site probability 0.734 between residues 14 and 15; uncharacterized protein	join(1879863..1880025,1880087..1880132,1880230..1880393,1880440..1880627,1880658..1880726,1880768..1880816,1880850..1880962,1880996..1881295)	Theileria annulata	3864123
TA21125	CDS	TA21125	NC_011129.2	1881317	1883036	R	uncharacterized protein	complement(join(1881317..1881874,1881904..1882215,1882268..1882522,1882554..1883036))	Theileria annulata	3864124
TA21130	CDS	TA21130	NC_011129.2	1883176	1883919	R	uncharacterized protein	complement(1883176..1883919)	Theileria annulata	3864125
TA21135	CDS	TA21135	NC_011129.2	1884758	1885555	D	uncharacterized protein	1884758..1885555	Theileria annulata	3864126
TA21140	CDS	TA21140	NC_011129.2	1885716	1887106	D	uncharacterized protein	join(1885716..1886339,1886372..1887106)	Theileria annulata	3864127
TA21145	CDS	TA21145	NC_011129.2	1887128	1888678	R	transcriptional regulator, putative; uncharacterized protein	complement(1887128..1888678)	Theileria annulata	3864128
TA21150	CDS	TA21150	NC_011129.2	1888848	1890836	D	zinc-finger protein zpr1, putative	join(1888848..1888989,1889024..1889142,1889176..1889224,1889353..1889636,1889671..1889781,1889816..1889978,1890034..1890246,1890307..1890836)	Theileria annulata	3864129
TA21155	CDS	TA21155	NC_011129.2	1890853	1892367	R	1 probable transmembrane helix predicted for TA21155 by TMHMM2.0 at aa 34-56; uncharacterized protein	complement(join(1890853..1891041,1891193..1891294,1891326..1891394,1891456..1891558,1891633..1891697,1891790..1891911,1891948..1892239,1892269..1892367))	Theileria annulata	3864130
TA21160	CDS	TA21160	NC_011129.2	1892418	1897647	R	uncharacterized protein	complement(join(1892418..1894030,1894061..1896572,1896606..1897608,1897640..1897647))	Theileria annulata	3863528
TA21165	CDS	TA21165	NC_011129.2	1897802	1898510	D	2 probable transmembrane helices predicted for TA21165 by TMHMM2.0 at aa 24-46 and 143-165; uncharacterized protein	join(1897802..1897847,1897881..1897968,1898000..1898254,1898372..1898510)	Theileria annulata	3863529
TA21175	CDS	TA21175	NC_011129.2	1898917	1899236	R	Smaller than other cyclophilins; no Pfam hit to cyclophilin domain but significant hit to rrm domain; thus, annotated as rna-bing protein; rna-binding protein, putative	complement(join(1898917..1899044,1899110..1899236))	Theileria annulata	3863530
TA21180	CDS	TA21180	NC_011129.2	1899327	1901109	D	uncharacterized protein	join(1899327..1899568,1899628..1899776,1899808..1899932,1900029..1900117,1900147..1900242,1900307..1900378,1900554..1901109)	Theileria annulata	3863531
TA21185	CDS	TA21185	NC_011129.2	1901239	1901822	R	uncharacterized protein	complement(join(1901239..1901574,1901613..1901822))	Theileria annulata	3863532
TA21190	CDS	TA21190	NC_011129.2	1902701	1904485	R	eukaryotic translation initiation factor 2 gamma subunit, putative	complement(join(1902701..1902971,1903003..1903188,1903240..1903552,1903630..1903883,1903956..1904093,1904136..1904247,1904340..1904418,1904450..1904485))	Theileria annulata	3863533
TA21195	CDS	TA21195	NC_011129.2	1905256	1906521	D	Very weak hit to ZnF_MFX domain; a type of zinc binding domain found in zinc finger proteins; no similarity to other zinc finger proteins; hence, annotated as a hypothetical protein; uncharacterized protein	1905256..1906521	Theileria annulata	3863534
TA21200	CDS	TA21200	NC_011129.2	1906554	1907112	D	Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA21200 by TMHMM2.0 at aa 20-37; uncharacterized protein	join(1906554..1906563,1906680..1906888,1906921..1907112)	Theileria annulata	3863535
TA21205	CDS	TA21205	NC_011129.2	1907272	1907717	D	Signal peptide predicted for TA21205 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.000) with cleavage site probability 0.412 between residues 21 and 22; uncharacterized protein	join(1907272..1907346,1907376..1907717)	Theileria annulata	3863536
TA21210	CDS	TA21210	NC_011129.2	1907848	1908603	R	bet3 transport protein, putative	complement(join(1907848..1907940,1908000..1908182,1908278..1908377,1908413..1908510,1908550..1908603))	Theileria annulata	3863537
TA21215	CDS	TA21215	NC_011129.2	1908950	1910172	D	uncharacterized protein	join(1908950..1909590,1909647..1909944,1910035..1910172)	Theileria annulata	3863538
TA21220	CDS	TA21220	NC_011129.2	1910298	1912749	D	Shows moderate Pfam hit(7.0e-05) to UPF0054 domain; uncharacterized protein	join(1910298..1910427,1910511..1910672,1910703..1910741,1910770..1910836,1910909..1911069,1911124..1911277,1911298..1911309,1911468..1911579,1911714..1912015,1912092..1912297,1912385..1912405,1912505..1912601,1912638..1912749)	Theileria annulata	3863539
TA21225	CDS	TA21225	NC_011129.2	1913232	1919179	D	Contains a putative Bromodomain (1.75e-12) and shows weak hit to C2HC type zinc-finger domain (1.67e-01); Bromodomain protein, putative	join(1913232..1914165,1914275..1914439,1914469..1916193,1916289..1919179)	Theileria annulata	3863540
TA21230	CDS	TA21230	NC_011129.2	1919281	1920121	D	1 probable transmembrane helix predicted for TA21230 by TMHMM2.0 at aa 221-243; Signal peptide predicted for TA21230 by SignalP 2.0 HMM (Signal peptide probability 0.765, signal anchor probability 0.000) with cleavage site probability 0.573 between residues 22 and 23; P24 family protein, putative	join(1919281..1919400,1919447..1919696,1919730..1920121)	Theileria annulata	3863541
TA21235	CDS	TA21235	NC_011129.2	1920325	1923738	R	uncharacterized protein	complement(1920325..1923738)	Theileria annulata	3863542
TA21240	CDS	TA21240	NC_011129.2	1925852	1927551	D	tubulin alpha chain, putative	join(1925852..1925913,1926074..1926200,1926272..1927047,1927194..1927551)	Theileria annulata	3863543
TA21245	CDS	TA21245	NC_011129.2	1927661	1928147	R	uncharacterized protein	complement(join(1927661..1927784,1927894..1928147))	Theileria annulata	3863544
TA21250	CDS	TA21250	NC_011129.2	1928453	1928900	R	SMART 1 transmembrane domain at aa 89-111; 1 probable transmembrane helix predicted for TA21250 by TMHMM2.0 at aa 89-111; uncharacterized protein	complement(join(1928453..1928576,1928656..1928900))	Theileria annulata	3863545
TA21255	CDS	TA21255	NC_011129.2	1929167	1931270	R	Tap404f10.p1c.C.cand.24 - score = 47.17; uncharacterized protein	complement(join(1929167..1929470,1929520..1931270))	Theileria annulata	3863546
TA21260	CDS	TA21260	NC_011129.2	1931917	1932561	D	Tap404f10.p1c.cand.118 - score = 43.62; SMART pfam:glutaredoxin (Pf00462) at aa 63-124, E()=1.30e-20; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA21260 by SignalP 2.0 HMM (Signal peptide probability 0.952, signal anchor probability 0.040) with cleavage site probability 0.652 between residues 24 and 25; glutaredoxin, putative	join(1931917..1932125,1932156..1932216,1932293..1932359,1932408..1932469,1932505..1932561)	Theileria annulata	3863547
TA21265	CDS	TA21265	NC_011129.2	1932824	1934932	D	SMART Tryp_Spc (SM0020) at aa 119-307, E()=2.79e+00; serine protease (zymogen-like), putative	join(1932824..1932840,1932866..1933276,1933308..1933394,1933472..1933711,1933763..1934034,1934097..1934223,1934274..1934376,1934409..1934522,1934573..1934932)	Theileria annulata	3863735
TA21270	CDS	TA21270	NC_011129.2	1935387	1936130	D	Tap404f10.p1c.cand.119 - score = 10.37; SMART pfam:Ribosomal_L10 (PF00466) at aa 55-161, E()=4.10e-02; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA21270 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.002) with cleavage site probability 0.630 between residues 22 and 23; ribosomal protein L10, putative	1935387..1936130	Theileria annulata	3863736
TA21275	CDS	TA21275	NC_011129.2	1936227	1939267	R	SMART ZnF_UBP (SM0290) at aa 188-249, E()=1.31e-13; pfam:UCH-1 (unknown) at aa 321-352, E()=6.90e-06; pfam:UCH-2 (unknown) at aa 650-708, E()=8.80e-16; ubiquitin carboxyl-terminal hydrolase (UBP14)	complement(join(1936227..1936511,1936834..1937109,1937144..1937302,1937332..1937450,1937510..1937557,1937589..1937754,1937786..1937906,1937940..1938050,1938081..1938148,1938211..1938291,1938326..1938407,1938448..1938566,1938604..1938696,1938758..1938860,1938892..1939089,1939167..1939267))	Theileria annulata	3863737
TA21280	CDS	TA21280	NC_011129.2	1939402	1940571	D	SMART 3 transmembrane domains at aa 4-26, 314-336 and 356-378; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA21280 by TMHMM2.0 at aa 4-26, 314-336 and 356-378; Signal anchor predicted for TA21280 by SignalP 2.0 HMM (Signal peptide probability 0.049, signal anchor probability 0.781) with cleavage site probability 0.018 between residues 24 and 25; uncharacterized protein	1939402..1940571	Theileria annulata	3863738
TA21285	CDS	TA21285	NC_011129.2	1940620	1942187	R	Tap404f10.p1c.C.cand.22 - score = 18.31; SMART RRM (SM0360) at aa 168-241, E()=1.85e-18; eukaryotic translation initiation factor (eiF3 delta)	complement(join(1940620..1940652,1940683..1940794,1940872..1940984,1941052..1941129,1941160..1941237,1941328..1941528,1941629..1941718,1942111..1942143,1942176..1942187))	Theileria annulata	3863739
TA21290	CDS	TA21290	NC_011129.2	1943871	1944296	D	Tap404f10.p1c.cand.121 - score = 12.93; uncharacterized protein	1943871..1944296	Theileria annulata	3863740
TA21295	CDS	TA21295	NC_011129.2	1944597	1945879	R	Tap404f10.p1c.C.cand.21 - score = 14.95; SMART DnaJ (SM0271) at aa 72-129, E()=3.27e-18; molecular chaperone (DnaJ-like), putative	complement(join(1944597..1944831,1944880..1944965,1945044..1945239,1945305..1945444,1945607..1945879))	Theileria annulata	3863741
TA21300	CDS	TA21300	NC_011129.2	1945969	1946739	D	Tap404f10.p1c.cand.122 - score = 17.96; uncharacterized protein	1945969..1946739	Theileria annulata	3863742
TA21305	CDS	TA21305	NC_011129.2	1946883	1947666	R	Tap404f10.p1c.C.cand.20 - score = 21.42; 3'-5' exoribonuclease (CSL4)	complement(join(1946883..1946904,1946935..1947001,1947054..1947135,1947169..1947253,1947328..1947479,1947532..1947666))	Theileria annulata	3863743
TA21310	CDS	TA21310	NC_011129.2	1947737	1952412	R	small overlap at the 5' end with gene TA21315; uncharacterized protein	complement(join(1947737..1948520,1948589..1949650,1949756..1952412))	Theileria annulata	3863744
TA21315	CDS	TA21315	NC_011129.2	1952384	1952992	D	1 probable transmembrane helix predicted for TA21315 by TMHMM2.0 at aa 13-35; small overlap at the 5' end with gene TA21310; uncharacterized protein	join(1952384..1952400,1952623..1952992)	Theileria annulata	3863745
TA21320	CDS	TA21320	NC_011129.2	1953425	1953955	R	uncharacterized protein	complement(join(1953425..1953706,1953781..1953813,1953941..1953955))	Theileria annulata	3863746
TA21325	CDS	TA21325	NC_011129.2	1954149	1957084	R	Tap404f10.p1c.C.cand.18 - score = 58.57; SMART STYKc (SM0221) at aa 442-713, E()=2.07e-08; serine/threonine protein kinase, putative	complement(join(1954149..1954517,1954697..1954920,1955018..1955124,1955207..1955517,1955604..1955777,1955846..1956444,1956512..1956575,1956632..1957084))	Theileria annulata	3863747
TA21330	CDS	TA21330	NC_011129.2	1957232	1959162	D	Tap404f10.p1c.cand.124 - score = 45.82; SMART pfam:NAD_Gly3P_dh (PF01210) at aa 29-371, E()=2.10e-139; glycerol-3-phosphate dehydrogenase (gpdh), putative	join(1957232..1957281,1957439..1957481,1957516..1957605,1957758..1957949,1958018..1958188,1958324..1958605,1958706..1958858,1958940..1959074,1959136..1959162)	Theileria annulata	3863748
TA21335	CDS	TA21335	NC_011129.2	1959327	1960677	D	Tap404f10.p1c.cand.124 - score = 45.82; SMART 3 TPR (SM0028) domains, at aa 54-87, E()=3.24e-04; 88-121, E()=3.87e-02; 122-155, E()=3.32e+01; Ubox (SM0504) at aa 236-299, E()=6.87e-16; uncharacterized protein	join(1959327..1959644,1959738..1959825,1959914..1960089,1960187..1960333,1960420..1960523,1960569..1960677)	Theileria annulata	3863749
TA21340	CDS	TA21340	NC_011129.2	1960829	1962932	D	Tap404f10.p1c.cand.125 - score = 54.15; SMART pfam:GTP_OBG (PF01018) at aa 81-428, E()=7.30e-31; GTP-binding protein, putative	join(1960829..1961012,1961047..1961327,1961364..1961451,1961486..1961552,1961602..1961711,1961778..1961881,1961911..1962255,1962334..1962514,1962544..1962932)	Theileria annulata	3863750
TA21345	CDS	TA21345	NC_011129.2	1963025	1963423	R	uncharacterized protein	complement(1963025..1963423)	Theileria annulata	3863751
TA21350	CDS	TA21350	NC_011129.2	1963740	1967323	R	uncharacterized protein	complement(join(1963740..1963796,1963848..1963948,1963982..1964236,1964313..1964360,1964435..1964764,1964837..1965514,1965610..1965674,1965705..1965862,1965892..1965978,1966027..1966248,1966336..1966516,1966559..1966796,1966845..1966980,1967050..1967222,1967287..1967323))	Theileria annulata	3863752
TA21355	CDS	TA21355	NC_011129.2	1967929	1968858	D	Tap404f10.p1c.cand.126 - score = 28.45; SMART pfam:Ribosomal_L10 (PF0486) at aa 5-107, E()=4.20e-30; pfam:60_S_ribosomal (PF00428) at aa 204-309, E()=2.90e-05; ribosomal phosphoprotein P0, putative	1967929..1968858	Theileria annulata	3863753
TA21360	CDS	TA21360	NC_011129.2	1969342	1969581	D	Tap404f10.p1c.cand.127 - score = 9.23; SMART pfam:Ribosomal_L38e (PF01781) at aa 2-74, E()=4.50e-12; 60S ribosomal protein L38, putative	1969342..1969581	Theileria annulata	3863430
TA21365	CDS	TA21365	NC_011129.2	1969699	1971190	R	Tap404f10.p1c.C.cand.15 - score = 22.05; SMART pfam:lactamase_B (PF00753) at aa 90-283, E()=4.80e-23; hydroxyacylglutathione hydrolase, putative	complement(join(1969699..1969809,1969850..1969955,1970024..1970165,1970219..1970326,1970361..1970552,1970622..1970811,1970951..1971190))	Theileria annulata	3863431
TA21370	CDS	TA21370	NC_011129.2	1971560	1972849	D	SMART 3 transmembrane domains at aa 20-42, 52-71 and 78-100; 3 probable transmembrane helices predicted for TA21370 by TMHMM2.0 at aa 20-42, 52-71 and 78-100; Signal anchor predicted for TA21370 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.843) with cleavage site probability 0.003 between residues 42 and 43; uncharacterized protein	join(1971560..1971631,1971697..1971830,1971941..1972082,1972175..1972849)	Theileria annulata	3863432
TA21375	CDS	TA21375	NC_011129.2	1973142	1974528	R	uncharacterized protein	complement(join(1973142..1974190,1974234..1974528))	Theileria annulata	3863433
TA21380	CDS	TA21380	NC_011129.2	1974993	1976321	R	uncharacterized protein	complement(join(1974993..1975975,1976087..1976321))	Theileria annulata	3863434
TA21385	CDS	TA21385	NC_011129.2	1976843	1978027	D	Tap404f10.p1c.cand.129 - score = 86.86; uncharacterized protein	1976843..1978027	Theileria annulata	3863435
TA21390	CDS	TA21390	NC_011129.2	1978460	1980313	D	small overlap at the 3' end with gene TA21395; SMART 2 transmembrane domains at aa 348-370 and 563-585; 2 probable transmembrane helices predicted for TA21390 by TMHMM2.0 at aa 348-370 and 563-585; Theileria parva Tpr-related protein, putative	1978460..1980313	Theileria annulata	3863436
TA21395	CDS	TA21395	NC_011129.2	1980276	1981076	R	small overlap at the 3' end with gene TA21390; SMART 1 transmembrane domain at aa 15-37; 1 probable transmembrane helix predicted for TA21395 by TMHMM2.0 at aa 15-37; uncharacterized protein	complement(join(1980276..1980924,1980934..1981076))	Theileria annulata	3863437
TA21400	CDS	TA21400	NC_011129.2	1981122	1981511	R	Tap404f10.p1c.; uncharacterized protein	complement(1981122..1981511)	Theileria annulata	3863438
TA21405	CDS	TA21405	NC_011129.2	1981577	1983354	R	SMART AAA (SM0382) at aa 199-338, E()=4.45e-23; 226S proteasome regulatory particle, putative	complement(join(1981577..1981705,1981750..1981862,1981932..1982153,1982221..1982347,1982380..1982444,1982476..1982532,1982620..1982836,1982893..1982997,1983130..1983354))	Theileria annulata	3863439
TA21410	CDS	TA21410	NC_011129.2	1983694	1987349	D	Tap404f10.p1c.cand.130 - score = 55.90; uncharacterized protein	join(1983694..1984501,1984564..1986089,1986159..1986254,1986349..1986435,1986465..1986527,1986557..1986688,1986720..1986802,1987024..1987077,1987238..1987349)	Theileria annulata	3863440
TA21415	CDS	TA21415	NC_011129.2	1987525	1991825	R	Tap404f10.p1c.C.cand.10 - score = 100.53; SMART pfam:SMC_N (PF02463) at aa 72-233, E()=9.90e-37; pfam:SMC_C (PF02483) at aa 1067-1291, E()=4.10e-25; SMC (structural maintenance of chromosome) protein (type 1), putative	complement(join(1987525..1989990,1990081..1990561,1990620..1990708,1990766..1990931,1991009..1991160,1991246..1991472,1991507..1991825))	Theileria annulata	3863441
TA21420	CDS	TA21420	NC_011129.2	1992135	1993089	D	SMART 2 RRM (SM0360) at aa 26-104, E()=2.56e+00; 130-197, E()=3.04e-05; 1 transmembrane domain at aa 226-248; 1 probable transmembrane helix predicted for TA21420 by TMHMM2.0 at aa 226-248; GPI-Anchor Signal predicted for TA21420 by DGPI v2.04, no cleavage site predicted; RNA binding protein, putative	join(1992135..1992249,1992267..1992331,1992389..1992700,1992785..1992868,1992901..1993089)	Theileria annulata	3863442
TA21425	CDS	TA21425	NC_011129.2	1993216	1995288	R	Tap404f10.p1c.C.cand.9 - score = 32.55; uncharacterized protein	complement(join(1993216..1993457,1993575..1993660,1993692..1993958,1994047..1994132,1994163..1994356,1994453..1994538,1994570..1994724,1994753..1995103,1995202..1995288))	Theileria annulata	3863443
TA21430	CDS	TA21430	NC_011129.2	1995762	2000412	D	Tap404f10.p1c.cand.134 - score = 101.54; GPI-Anchor Signal predicted for TA21430 by DGPI v2.04 with cleavage site probability 0.2924 near 1292; importin (karyopherin) beta, putative	join(1995762..1997484,1997570..1997790,1997873..1998546,1998651..1999116,1999251..1999462,1999608..1999869,1999900..1999991,2000024..2000091,2000165..2000250,2000278..2000412)	Theileria annulata	3863444
TA21435	CDS	TA21435	NC_011129.2	2000871	2003808	D	Tap404f10.p1c.cand.135 - score = 68.53; Tap404f10.p1c.cand.135 - score = 68.53; SMART SET (SM0317) at aa 703-834, E()=5.50e-20; uncharacterized protein	join(2000871..2001629,2001717..2002057,2002111..2003043,2003126..2003283,2003354..2003432,2003513..2003698,2003733..2003808)	Theileria annulata	3863445
TA21440	CDS	TA21440	NC_011129.2	2003862	2004265	R	Tap404f10.p1c.C.cand.8 - score = 14.15; uncharacterized protein	complement(join(2003862..2004050,2004086..2004265))	Theileria annulata	3863446
TA21445	CDS	TA21445	NC_011129.2	2004430	2005671	R	Tap404f10.p1c.C.cand.7 - score = 32.55; SMART pfam:GTP1_OBG (PF01018) at aa 1-268, E()=2.40e-124; pfam:TGS (PF02824) at aa 287-365, E()=4.50e-33; GTP-binding protein, putative	complement(join(2004430..2004708,2004740..2005005,2005076..2005501,2005542..2005671))	Theileria annulata	3863447
TA21450	CDS	TA21450	NC_011129.2	2005983	2008894	D	Tap404f10.p1c.cand.136 - score = 78.21; SMART pfam:GTP_EFTU (PF00009) at aa 97-395, E()=1.90e-82; pfam:GTP_EFTU_D2 (PF03144) at aa 445-523, E()=5.10e-21; pfam:EFG_C (PF00679) at aa 644-816, E()=1.70e-76; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal anchor predicted for TA21450 by SignalP 2.0 HMM (Signal peptide probability 0.158, signal anchor probability 0.765) with cleavage site probability 0.130 between residues 24 and 25; translation elongation factor G (EF-G), putative	join(2005983..2006289,2006334..2006429,2006459..2006616,2006647..2006772,2006825..2006982,2007012..2007107,2007142..2007206,2007236..2007517,2007548..2007606,2007648..2007833,2007872..2008060,2008092..2008252,2008294..2008894)	Theileria annulata	3863448
TA21455	CDS	TA21455	NC_011129.2	2008931	2009859	R	Tap404f10.p1c.C.cand.6 - score = 26.01; SMART pfam:zf-MYND (PF01753) at aa 243-282, E()=1.20e-09; uncharacterized protein	complement(join(2008931..2009186,2009220..2009340,2009382..2009859))	Theileria annulata	3863449
TA21460	CDS	TA21460	NC_011129.2	2010107	2010740	R	Tap404f10.p1c.C.cand.5 - score = 24.13; SMART pfam:TCTP (PF00838) at aa 1-170, E()=9.50e-39; p23 (translationally controlled tumor protein homolog), putative	complement(join(2010107..2010470,2010509..2010572,2010647..2010740))	Theileria annulata	3863926
TA21465	CDS	TA21465	NC_011129.2	2011250	2012647	D	Tap404f10.p1c.cand.137 - score = 126.63; uncharacterized protein	join(2011250..2011951,2011984..2012441,2012472..2012529,2012561..2012647)	Theileria annulata	3863927
TA21470	CDS	TA21470	NC_011129.2	2012709	2015634	D	Tap404f10.p1c.cand.137 - score = 126.63; SMART 7 MORN (SM0698) domains at aa 541-562, E()=1.73e+00; 564-585, E()=8.22e-06; 586-607, E()=2.90e-01; 608-629, E()=3.37e-02; 635-652, E()=2.09e+01; 677-698, E()=7.31e-01 and 838-859, E()=1.12e+00; Signal peptide predicted for TA21470 by SignalP 2.0 HMM (Signal peptide probability 0.924, signal anchor probability 0.019) with cleavage site probability 0.805 between residues 26 and 27; uncharacterized protein	join(2012709..2014402,2014476..2014549,2014581..2014678,2014735..2015634)	Theileria annulata	3863928
TA21475	CDS	TA21475	NC_011129.2	2015689	2016497	R	Tap404f10.p1c.C.cand.4 - score = 20.35; uncharacterized protein	complement(join(2015689..2015775,2015848..2015937,2015967..2016050,2016080..2016202,2016234..2016497))	Theileria annulata	3863929
TA21480	CDS	TA21480	NC_011129.2	2016705	2018664	D	Tap404f10.p1c.cand.138 - score = 42.79; uncharacterized protein	join(2016705..2017282,2017312..2018008,2018038..2018664)	Theileria annulata	3863930
TA21485	CDS	TA21485	NC_011129.2	2018758	2019374	D	Tap404f10.p1c.cand.139 - score = 14.27; uncharacterized protein	join(2018758..2018946,2018988..2019247,2019284..2019374)	Theileria annulata	3863931
TA21490	CDS	TA21490	NC_011129.2	2019677	2021076	D	Tap404f10.p1c.cand.140 - score = 32.74; SMART pfam:UPF0034 (unknown) at aa 29-326, E()=5.20e-50; uncharacterized protein	join(2019677..2019801,2019836..2019892,2019924..2020006,2020039..2020124,2020157..2020215,2020309..2020502,2020541..2020601,2020633..2020743,2020773..2021076)	Theileria annulata	3863932
TA21495	CDS	TA21495	NC_011129.2	2021206	2021606	D	Tap404f10.p1c.cand.141 - score = 17.19; uncharacterized protein	join(2021206..2021296,2021344..2021606)	Theileria annulata	3863933
TA21500	CDS	TA21500	NC_011129.2	2021796	2022277	D	Tap404f10.p1c.cand.141 - score = 17.19; SMART pfam:KE2 (PF01920) at aa 2-108, E()=4.70e-06; prefoldin subunit (KE2)	join(2021796..2021835,2021880..2021950,2021982..2022106,2022138..2022198,2022227..2022277)	Theileria annulata	3863934
TA21505	CDS	TA21505	NC_011129.2	2022283	2024390	R	Tap404f10.p1c.C.cand.3 - score = 49.14; uncharacterized protein	complement(join(2022283..2023562,2023594..2024211,2024246..2024390))	Theileria annulata	3863935
TA21510	CDS	TA21510	NC_011129.2	2026512	2033729	R	Tap404f10.p1c.C.cand.2 - score = 68.47; SMART 11 transmembrane domains at aa 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361, 554-576, 1751-1769, 1877-1899 and 1914-1936; 12 probable transmembrane helices predicted for TA21510 by TMHMM2.0 at aa 25-47, 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361, 554-576, 1751-1769, 1877-1899 and 1914-1936; Signal anchor predicted for TA21510 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.985) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein	complement(2026512..2033729)	Theileria annulata	3863936
TA21515	CDS	TA21515	NC_011129.2	2035828	2043045	D	SMART 8 transmembrane domains at aa 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361 and 554-576; 12 probable transmembrane helices predicted for TA21515 by TMHMM2.0 at aa 25-47, 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361, 554-576, 1751-1769, 1877-1899 and 1914-1936; Signal anchor predicted for TA21515 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.985) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein	2035828..2043045	Theileria annulata	3863937
TA19700	CDS	TA19700	NC_011129.2	2044234	2046184	D	glutathione synthetase, putative	join(2044234..2044861,2044891..2045675,2045705..2046184)	Theileria annulata	3863866
TA19695	CDS	TA19695	NC_011129.2	2047039	2055042	D	Weak SMART hit (7.9e-01) to MATH (meprin & TRAF homology domain; part of the protein has considerable similarity to P. falciparum hypothetical protein pfe0570W; uncharacterized protein	2047039..2055042	Theileria annulata	3863865
TA19690	CDS	TA19690	NC_011129.2	2055243	2056912	R	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative	complement(join(2055243..2055418,2055468..2055530,2055560..2055644,2055719..2055846,2055899..2056121,2056152..2056450,2056482..2056670,2056702..2056912))	Theileria annulata	3863864
TA19685	CDS	TA19685	NC_011129.2	2057553	2058293	D	Signal peptide predicted for TA19685 by SignalP 2.0 HMM (Signal peptide probability 0.927, signal anchor probability 0.000) with cleavage site probability 0.398 between residues 21 and 22; uncharacterized protein	2057553..2058293	Theileria annulata	3863863
TA19680	CDS	TA19680	NC_011129.2	2058405	2064330	R	uncharacterized protein	complement(join(2058405..2063484,2063513..2064330))	Theileria annulata	3863862
TA19675	CDS	TA19675	NC_011129.2	2065652	2067055	D	uncharacterized protein	join(2065652..2066614,2066657..2067055)	Theileria annulata	3863861
TA19665	CDS	TA19665	NC_011129.2	2068135	2076450	D	SfiI-subtelomeric fragment related protein family member, putative	2068135..2076450	Theileria annulata	3863859
TA19660	CDS	TA19660	NC_011129.2	2077383	2084795	D	SfiI-subtelomeric fragment related protein family member, putative	2077383..2084795	Theileria annulata	3863858
TA19655	CDS	TA19655	NC_011129.2	2085551	2086163	D	uncharacterized protein	join(2085551..2085564,2085699..2085918,2085950..2086033,2086065..2086163)	Theileria annulata	3863857
TA19650	CDS	TA19650	NC_011129.2	2086423	2089165	R	1 probable transmembrane helix predicted for TA19650 by TMHMM2.0 at aa 30-52; Signal peptide predicted for TA19650 by SignalP 2.0 HMM (Signal peptide probability 0.733, signal anchor probability 0.264) with cleavage site probability 0.664 between residues 51 and 52; uncharacterized protein	complement(join(2086423..2086545,2086583..2086782,2086860..2086955,2087024..2087136,2087256..2087283,2087330..2087364,2087462..2087521,2087802..2087910,2087944..2087990,2088029..2088129,2088169..2088236,2088268..2088590,2088808..2088847,2088883..2089004,2089083..2089165))	Theileria annulata	3863856
TA19645	CDS	TA19645	NC_011129.2	2089753	2092099	D	4 probable transmembrane helices predicted for TA19645 by TMHMM2.0 at aa 117-139, 203-225, 297-319 and 332-354; ABC transporter, putative	join(2089753..2090509,2090553..2090605,2090685..2090862,2090897..2090961,2091035..2091133,2091181..2091712,2091802..2091901,2091931..2092099)	Theileria annulata	3863855
TA19640	CDS	TA19640	NC_011129.2	2092215	2094130	D	uncharacterized protein	join(2092215..2092529,2092773..2092854,2092884..2093462,2093497..2093897,2093930..2094130)	Theileria annulata	3863854
TA19635	CDS	TA19635	NC_011129.2	2094187	2095607	R	Signal peptide predicted for TA19635 by SignalP 2.0 HMM (Signal peptide probability 0.906, signal anchor probability 0.000) with cleavage site probability 0.389 between residues 26 and 27; uncharacterized protein	complement(join(2094187..2094501,2094554..2094628,2094687..2094707,2094739..2095037,2095103..2095132,2095164..2095301,2095335..2095430,2095496..2095607))	Theileria annulata	3863853
TA19630	CDS	TA19630	NC_011129.2	2095818	2097163	D	uncharacterized protein	join(2095818..2095997,2096029..2096098,2096132..2096236,2096293..2097026,2097089..2097163)	Theileria annulata	3863852
TA19625	CDS	TA19625	NC_011129.2	2097305	2098431	D	uncharacterized protein	join(2097305..2097660,2097681..2097850,2097903..2097988,2098021..2098100,2098131..2098431)	Theileria annulata	3863851
TA19620	CDS	TA19620	NC_011129.2	2098716	2101055	D	Alternative gene structure possible; 1 or more introns possible in exon 9 in the current gene model; contains 5 putative transmembrane domains; 6 probable transmembrane helices predicted for TA19620 by TMHMM2.0 at aa 144-166, 222-244, 251-273, 383-405, 452-474 and 489-511; acyl transferase, putative	join(2098716..2099044,2099094..2099281,2099336..2099409,2099460..2099619,2099651..2099744,2099775..2099931,2100033..2100161,2100195..2100314,2100392..2100791,2100895..2101055)	Theileria annulata	3863850
TA19610	CDS	TA19610	NC_011129.2	2101219	2103110	D	Contains conserved domain; weak Pafm hit (9.3e-01) to DUF164 domain; uncharacterized protein	join(2101219..2101333,2101387..2101503,2101570..2103110)	Theileria annulata	3864053
TA19605	CDS	TA19605	NC_011129.2	2103152	2104496	R	Weak Pfam hit (3.9e-02) to mRNA_triPase domain; mrna capping enzyme subunit, putative	complement(join(2103152..2103672,2103758..2104496))	Theileria annulata	3864052
TA19600	CDS	TA19600	NC_011129.2	2104931	2105820	D	Signal peptide predicted for TA19600 by SignalP 2.0 HMM (Signal peptide probability 0.608, signal anchor probability 0.198) with cleavage site probability 0.308 between residues 24 and 25; cyclophilin 1, putative	join(2104931..2105173,2105267..2105358,2105412..2105658,2105716..2105820)	Theileria annulata	3864051
TA19595	CDS	TA19595	NC_011129.2	2105937	2110596	R	damage-specific DNA binding protein 1, putative	complement(join(2105937..2106388,2106474..2110167,2110237..2110596))	Theileria annulata	3864050
TA19590	CDS	TA19590	NC_011129.2	2110777	2113973	R	t-cell activation-related wd repeat protein, putative	complement(join(2110777..2111034,2111064..2111140,2111196..2111847,2111910..2112017,2112051..2112152,2112225..2112353,2112406..2112770,2112832..2112939,2112971..2113680,2113708..2113973))	Theileria annulata	3864049
TA19585	CDS	TA19585	NC_011129.2	2114800	2116893	D	chaperonin containing tcp-1 delta subunit, putative	join(2114800..2114899,2114983..2115125,2115188..2115346,2115401..2115493,2115558..2115974,2116048..2116200,2116233..2116459,2116590..2116893)	Theileria annulata	3864048
TA19580	CDS	TA19580	NC_011129.2	2117005	2118584	R	Contains putative WD40 repeat domains; Shows weak Pfam hit (2.3e-03) to CCCH type zinc finger domain; zinc finger protein, putative	complement(join(2117005..2117344,2117445..2118153,2118262..2118326,2118378..2118471,2118515..2118584))	Theileria annulata	3864047
TA19575	CDS	TA19575	NC_011129.2	2118880	2120700	R	TapCf04.q1c.cand.104 - score = 33.11; uncharacterized protein	complement(2118880..2120700)	Theileria annulata	3864046
TA19570	CDS	TA19570	NC_011129.2	2121285	2122315	R	RNA-binding protein, putative	complement(join(2121285..2121782,2121827..2121978,2122051..2122149,2122186..2122315))	Theileria annulata	3864045
TA19565	CDS	TA19565	NC_011129.2	2122466	2123586	R	TapCf04.q1c.cand.102 - score = 36.30; pre-rRNA processing protein, putative	complement(join(2122466..2122571,2122638..2122841,2122906..2123066,2123101..2123230,2123294..2123586))	Theileria annulata	3864044
TA19550	CDS	TA19550	NC_011129.2	2123999	2126071	R	rna-associated protein, putative	complement(2123999..2126071)	Theileria annulata	3864041
TA19545	CDS	TA19545	NC_011129.2	2126987	2130514	D	TapCf04.q1c.C.cand.18 - score = 95.61; eukaryotic translation initiation factor 3 subunit 10, putative	join(2126987..2129023,2129219..2130514)	Theileria annulata	3864040
TA19540	CDS	TA19540	NC_011129.2	2130790	2131086	D	TapCf04.q1c.C.cand.19 - score = 12.00; dynein light chain 1, putative	2130790..2131086	Theileria annulata	3864039
TA19535	CDS	TA19535	NC_011129.2	2131200	2131900	R	DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide, putative	complement(join(2131200..2131323,2131483..2131634,2131739..2131900))	Theileria annulata	3864038
TA19530	CDS	TA19530	NC_011129.2	2131950	2133331	R	uncharacterized protein	complement(join(2131950..2132058,2132113..2132548,2132694..2132804,2133008..2133121,2133155..2133248,2133275..2133331))	Theileria annulata	3864037
TA19525	CDS	TA19525	NC_011129.2	2133871	2135678	D	Contains putative WD40 domains; WD40 domain protein, putative	join(2133871..2133981,2134015..2134140,2134217..2134319,2134434..2134597,2134629..2134704,2134729..2134838,2134907..2135136,2135170..2135563,2135598..2135678)	Theileria annulata	3864036
TA19520	CDS	TA19520	NC_011129.2	2136895	2138978	D	uncharacterized protein	join(2136895..2138143,2138343..2138603,2138716..2138978)	Theileria annulata	3864035
TA19515	CDS	TA19515	NC_011129.2	2139398	2153057	R	ubiquitin-protein ligase 1, putative	complement(join(2139398..2146339,2146436..2151691,2151774..2151896,2152059..2152753,2152787..2152874,2152905..2153057))	Theileria annulata	3863655
TA19510	CDS	TA19510	NC_011129.2	2154314	2155005	D	centrin 3, putative	join(2154314..2154487,2154542..2154656,2154695..2154772,2154835..2154878,2154913..2155005)	Theileria annulata	3863654
TA19505	CDS	TA19505	NC_011129.2	2155088	2156781	D	uncharacterized protein	join(2155088..2155135,2155245..2155339,2155461..2155535,2155612..2155763,2155830..2155951,2155981..2156073,2156109..2156513,2156749..2156781)	Theileria annulata	3863653
TA19500	CDS	TA19500	NC_011129.2	2157124	2157765	D	DNA-directed RNA polymerase ii, putative	join(2157124..2157372,2157487..2157765)	Theileria annulata	3863652
TA19495	CDS	TA19495	NC_011129.2	2158057	2158720	D	Ahp/TSA family-related protein, putative	join(2158057..2158201,2158226..2158473,2158535..2158720)	Theileria annulata	3863651
TA19485	CDS	TA19485	NC_011129.2	2158917	2160971	R	TapCf04.q1c.cand.98 - score = 35.99; uncharacterized protein	complement(join(2158917..2159073,2159108..2159145,2159234..2159302,2159339..2159524,2159564..2159662,2159691..2159795,2159826..2159882,2159913..2160013,2160043..2160238,2160271..2160366,2160397..2160563,2160617..2160971))	Theileria annulata	3863650
TA19480	CDS	TA19480	NC_011129.2	2161482	2163174	D	2 probable transmembrane helices predicted for TA19480 by TMHMM2.0 at aa 392-414 and 441-463; glycerol-3-phosphate acyltransferase, putative	join(2161482..2161546,2161614..2161779,2161810..2162097,2162127..2162213,2162253..2162301,2162335..2162462,2162493..2162570,2162600..2162665,2162698..2163174)	Theileria annulata	3863649
TA19475	CDS	TA19475	NC_011129.2	2163866	2165315	R	3 probable transmembrane helices predicted for TA19475 by TMHMM2.0 at aa 26-45, 60-82 and 95-117; Signal anchor predicted for TA19475 by SignalP 2.0 HMM (Signal peptide probability 0.007, signal anchor probability 0.980) with cleavage site probability 0.006 between residues 46 and 47; uncharacterized protein	complement(join(2163866..2164694,2164729..2165099,2165202..2165315))	Theileria annulata	3863648
TA19470	CDS	TA19470	NC_011129.2	2165344	2168591	R	pp1-like protein serine/threonine phosphatase, putative	complement(join(2165344..2165467,2165498..2165649,2165727..2166410,2166478..2166658,2166688..2166845,2166878..2167021,2167051..2167869,2167900..2168122,2168154..2168292,2168348..2168591))	Theileria annulata	3863647
TA19465	CDS	TA19465	NC_011129.2	2168992	2172291	R	Weak SMART hit to CNH kinase domain; uncharacterized protein	complement(join(2168992..2169890,2169921..2170044,2170076..2170161,2170191..2170277,2170311..2171958,2172019..2172165,2172250..2172291))	Theileria annulata	3863646
TA19460	CDS	TA19460	NC_011129.2	2172434	2175501	R	Weak SMART & Pfam hit to serine-Threonine protein kinase domain at the C-terminal end of this hypothetical protein; it is possible that this coding exons may code for 2-3 separate hypothetical genes; uncharacterized protein	complement(join(2172434..2172597,2172632..2172909,2172917..2173029,2173071..2173258,2173301..2173373,2173405..2173551,2173588..2173668,2173699..2175501))	Theileria annulata	3863645
TA19455	CDS	TA19455	NC_011129.2	2175794	2176727	R	uncharacterized protein	complement(join(2175794..2176585,2176659..2176727))	Theileria annulata	3863644
TA19440	CDS	TA19440	NC_011129.2	2177003	2180196	D	Signal peptide predicted for TA19440 by SignalP 2.0 HMM (Signal peptide probability 0.882, signal anchor probability 0.027) with cleavage site probability 0.650 between residues 18 and 19; Dead/deah box RNA helicase, putative	join(2177003..2177129,2177191..2177605,2177699..2179790,2179864..2180196)	Theileria annulata	3863641
TA19435	CDS	TA19435	NC_011129.2	2180348	2182629	D	uncharacterized protein	join(2180348..2180439,2180470..2181161,2181196..2181377,2181419..2181466,2181498..2181990,2182026..2182507,2182546..2182629)	Theileria annulata	3863640
TA19430	CDS	TA19430	NC_011129.2	2182834	2183840	D	succinate dehydrogenase [ubiquinone] iron-sulfur protein, putative	join(2182834..2183022,2183057..2183299,2183329..2183391,2183444..2183530,2183560..2183746,2183776..2183840)	Theileria annulata	3863639
TA19425	CDS	TA19425	NC_011129.2	2183934	2186015	R	Contains Bromodomain (Pfam & SMART hits); bromodomain-containing protein, putative	complement(join(2183934..2184077,2184108..2184232,2184272..2186015))	Theileria annulata	3863638
TA19420	CDS	TA19420	NC_011129.2	2186771	2187649	D	uncharacterized protein	join(2186771..2186915,2186946..2187092,2187124..2187214,2187245..2187344,2187410..2187508,2187518..2187649)	Theileria annulata	3863637
TA19415	CDS	TA19415	NC_011129.2	2187697	2188273	R	uncharacterized protein	complement(join(2187697..2187948,2187968..2188273))	Theileria annulata	3863636
TA19410	CDS	TA19410	NC_011129.2	2188586	2189896	D	Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA19410 by TMHMM2.0 at aa 143-165; uncharacterized protein	join(2188586..2188957,2188989..2189247,2189277..2189482,2189515..2189602,2189643..2189896)	Theileria annulata	3864503
TA19405	CDS	TA19405	NC_011129.2	2190081	2192061	R	uncharacterized protein	complement(join(2190081..2190239,2190331..2190432,2190463..2190531,2190590..2190631,2190663..2190782,2190887..2190931,2190965..2191174,2191202..2191293,2191323..2191626,2191657..2191846,2191880..2192061))	Theileria annulata	3864502
TA19400	CDS	TA19400	NC_011129.2	2192315	2194351	R	Contains possible LisH-like and WD40 domains; uncharacterized protein	complement(join(2192315..2192413,2192452..2192694,2192724..2192896,2193028..2193111,2193142..2193199,2193229..2193324,2193356..2193454,2193555..2193739,2193770..2193998,2194030..2194240,2194320..2194351))	Theileria annulata	3864501
TA19395	CDS	TA19395	NC_011129.2	2194790	2195914	D	ATP synthase gamma chain, mitochondrial precursor, putative	join(2194790..2194960,2194994..2195086,2195134..2195209,2195248..2195477,2195509..2195610,2195642..2195914)	Theileria annulata	3864500
TA19385	CDS	TA19385	NC_011129.2	2195955	2196398	R	40s ribosomal protein s16, putative	complement(2195955..2196398)	Theileria annulata	3864498
TA19380	CDS	TA19380	NC_011129.2	2197005	2197604	D	60S ribosomal protein l13, putative	2197005..2197604	Theileria annulata	3864497
TA19375	CDS	TA19375	NC_011129.2	2197671	2198175	D	uncharacterized protein	join(2197671..2197782,2197838..2198175)	Theileria annulata	3864496
TA19370	CDS	TA19370	NC_011129.2	2198288	2199299	D	Several FATSA hits to possible GTP-binding proteins; GTP-binding protein, putative	join(2198288..2198311,2198372..2198416,2198486..2198584,2198614..2198706,2198736..2198777,2198822..2198967,2199032..2199161,2199240..2199299)	Theileria annulata	3864495
TA19365	CDS	TA19365	NC_011129.2	2199619	2201124	R	Contains a putative signal sequence; Signal peptide predicted for TA19365 by SignalP 2.0 HMM (Signal peptide probability 0.954, signal anchor probability 0.000) with cleavage site probability 0.933 between residues 22 and 23; uncharacterized protein	complement(join(2199619..2200878,2200915..2200994,2201028..2201124))	Theileria annulata	3864494
TA19360	CDS	TA19360	NC_011129.2	2201632	2203407	D	Contains 1 putative transmembrane domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA19360 by TMHMM2.0 at aa 12-34; Signal anchor predicted for TA19360 by SignalP 2.0 HMM (Signal peptide probability 0.097, signal anchor probability 0.841) with cleavage site probability 0.069 between residues 30 and 31; uncharacterized protein	join(2201632..2202603,2202633..2202781,2202812..2203042,2203137..2203407)	Theileria annulata	3864493
TA19355	CDS	TA19355	NC_011129.2	2203791	2205407	D	Contains significant SMART hit to actin domain; actin-related protein, putative	2203791..2205407	Theileria annulata	3864492
TA19350	CDS	TA19350	NC_011129.2	2205660	2207202	D	6-phosphogluconate dehydrogenase, putative	join(2205660..2205890,2205923..2205967,2205998..2206255,2206284..2206509,2206541..2206741,2206774..2206902,2206932..2207016,2207046..2207202)	Theileria annulata	3864491
TA19345	CDS	TA19345	NC_011129.2	2207480	2208375	D	Contains siginifant hit(3.8e-38) to Pfam N-terminal NifU-like domain (ExonII) and moderate Pfam hit (5.6e-04) to RNAse_P_Rpp14 domain (ExonI); it is possible that the 2 exons code for 2 separate proteins: the exonI containing gene codes for a RNAseP-related protein and the Exon II containing gene codes for a NifU-like protein (appropriate gene models for such a case are indicated as misc. features; however, in that circumstances, there will be a 4 bp overlap between the end & beginning of the 2 adjacent genes!); RNaseP-like protein with Nifu domain, putative	join(2207480..2207929,2208040..2208375)	Theileria annulata	3864490
TA19340	CDS	TA19340	NC_011129.2	2208675	2209484	D	The amino acid residues that have been shown to be important for cyclosporin-binding (Berriman et al 1998; PMID:9716503) are not conserved in this cyclophilin; thus no EC number was not assigned at the time of annotation; if it was enzymatically active then the designated EC_number would have been 5.2.1.8; peptidyl-prolyl cis-trans isomerase, putative	join(2208675..2208767,2208801..2209141,2209256..2209484)	Theileria annulata	3864489
TA19325	CDS	TA19325	NC_011129.2	2210314	2211430	D	uncharacterized protein	join(2210314..2210440,2210511..2210708,2210742..2211430)	Theileria annulata	3864487
TA19320	CDS	TA19320	NC_011129.2	2211506	2212551	D	Signal peptide predicted for TA19320 by SignalP 2.0 HMM (Signal peptide probability 0.918, signal anchor probability 0.027) with cleavage site probability 0.321 between residues 27 and 28; prohibitin, putative	join(2211506..2211614,2211827..2212551)	Theileria annulata	3864486
TA19315	CDS	TA19315	NC_011129.2	2212708	2213441	R	proteasome subunit beta type 2, putative	complement(join(2212708..2213019,2213115..2213441))	Theileria annulata	3864485
TA19310	CDS	TA19310	NC_011129.2	2213941	2217134	D	uncharacterized protein	join(2213941..2214052,2214174..2214911,2215045..2215207,2215274..2215357,2215398..2215524,2215591..2215725,2215847..2216122,2216152..2216344,2216525..2216582,2216614..2216754,2216888..2217134)	Theileria annulata	3864484
TA19305	CDS	TA19305	NC_011129.2	2217345	2222103	D	DNA mismatch repair protein, MutS family, putative	join(2217345..2217377,2217411..2217653,2217826..2220097,2220184..2220714,2220837..2220961,2221115..2221227,2221347..2221676,2221911..2222103)	Theileria annulata	3864483
TA19300	CDS	TA19300	NC_011129.2	2222452	2223084	D	putative u3 small nucleolar RNA-associated protein 11, putative	2222452..2223084	Theileria annulata	3864482
TA19295	CDS	TA19295	NC_011129.2	2223284	2224742	R	uncharacterized protein	complement(join(2223284..2223354,2223384..2223483,2223588..2223677,2223730..2223792,2223857..2223925,2224013..2224040,2224091..2224197,2224296..2224337,2224519..2224576,2224666..2224742))	Theileria annulata	3864481
TA19290	CDS	TA19290	NC_011129.2	2224793	2225978	D	1 probable transmembrane helix predicted for TA19290 by TMHMM2.0 at aa 10-32; uncharacterized protein	join(2224793..2224845,2224959..2225026,2225207..2225311,2225524..2225978)	Theileria annulata	3864480
TA19285	CDS	TA19285	NC_011129.2	2226087	2226791	D	30s ribosomal protein s11, putative	2226087..2226791	Theileria annulata	3864479
TA19275	CDS	TA19275	NC_011129.2	2226919	2229303	R	Contains a putative signal sequence; Signal peptide predicted for TA19275 by SignalP 2.0 HMM (Signal peptide probability 0.989, signal anchor probability 0.000) with cleavage site probability 0.731 between residues 21 and 22; uncharacterized protein	complement(2226919..2229303)	Theileria annulata	3864477
TA19270	CDS	TA19270	NC_011129.2	2229928	2230713	R	Predominantly plant-type 2-cys peroxiredoxin; 2-cys peroxiredoxin, putative	complement(2229928..2230713)	Theileria annulata	3864476
TA19265	CDS	TA19265	NC_011129.2	2230906	2232103	R	5 probable transmembrane helices predicted for TA19265 by TMHMM2.0 at aa 34-56, 63-85, 100-122, 129-151 and 171-193; uncharacterized protein	complement(join(2230906..2230986,2231100..2231258,2231326..2231529,2231721..2231834,2231906..2232103))	Theileria annulata	3864475
TA19255	CDS	TA19255	NC_011129.2	2233016	2233611	R	Signal peptide predicted for TA19255 by SignalP 2.0 HMM (Signal peptide probability 0.741, signal anchor probability 0.166) with cleavage site probability 0.553 between residues 26 and 27; uncharacterized protein	complement(join(2233016..2233242,2233324..2233396,2233456..2233611))	Theileria annulata	3864474
TA19250	CDS	TA19250	NC_011129.2	2233797	2234664	D	adrenodoxin-like ferredoxin, putative	join(2233797..2233900,2233957..2234060,2234217..2234346,2234550..2234664)	Theileria annulata	3864473
TA19245	CDS	TA19245	NC_011129.2	2234911	2235516	R	Signal peptide predicted for TA19245 by SignalP 2.0 HMM (Signal peptide probability 0.946, signal anchor probability 0.000) with cleavage site probability 0.841 between residues 19 and 20; uncharacterized protein	complement(join(2234911..2235065,2235176..2235197,2235229..2235320,2235387..2235516))	Theileria annulata	3864472
TA19240	CDS	TA19240	NC_011129.2	2235657	2236942	D	type ii proteins geranylgeranyltransferase beta subunit, putative	join(2235657..2236501,2236573..2236942)	Theileria annulata	3864471
TA19235	CDS	TA19235	NC_011129.2	2237020	2241345	R	13 probable transmembrane helices predicted for TA19235 by TMHMM2.0 at aa 9-31, 597-619, 632-654, 699-721, 783-805, 837-856, 877-899, 933-955, 972-994, 1009-1028, 1105-1127, 1171-1193 and 1216-1238; Signal anchor predicted for TA19235 by SignalP 2.0 HMM (Signal peptide probability 0.125, signal anchor probability 0.861) with cleavage site probability 0.032 between residues 30 and 31; integral membrane protein, putative	complement(join(2237020..2237121,2237170..2237257,2237351..2239692,2239807..2240282,2240357..2240444,2240599..2240899,2241023..2241345))	Theileria annulata	3864470
TA19230	CDS	TA19230	NC_011129.2	2241573	2242015	D	Signal peptide predicted for TA19230 by SignalP 2.0 HMM (Signal peptide probability 0.784, signal anchor probability 0.000) with cleavage site probability 0.297 between residues 19 and 20; uncharacterized protein	join(2241573..2241751,2241853..2242015)	Theileria annulata	3864469
TA19225	CDS	TA19225	NC_011129.2	2242166	2244330	D	translation initiation factor eif-2b epsilon subunit, putative	join(2242166..2242495,2242639..2242760,2242809..2244330)	Theileria annulata	3864468
TA19220	CDS	TA19220	NC_011129.2	2244495	2247450	D	prolyl-trna synthetase, putative	join(2244495..2244557,2244638..2244775,2244892..2245031,2245140..2245461,2245536..2245655,2245819..2246192,2246232..2246447,2246604..2247236,2247348..2247450)	Theileria annulata	3864467
TA19215	CDS	TA19215	NC_011129.2	2247489	2249520	R	10 probable transmembrane helices predicted for TA19215 by TMHMM2.0 at aa 7-29, 94-116, 137-159, 169-188, 193-212, 216-238, 327-349, 359-378, 431-453 and 468-490; integral membrane protein, putative	complement(join(2247489..2247608,2247795..2249066,2249215..2249232,2249311..2249520))	Theileria annulata	3864466
TA19210	CDS	TA19210	NC_011129.2	2249803	2254529	D	Weak similarity (4.5e-04)to Pfam & SMART MACPF (membrane attack complex perforin function); contains a putative signal sequence; alternative gene emodel possible; existence of the first three exons uncertain; uncharacterized protein	join(2249803..2249901,2249967..2249984,2250172..2250223,2250439..2250615,2250760..2250945,2251017..2251307,2251443..2251520,2251589..2252421,2252495..2253322,2253417..2253701,2253798..2253995,2254135..2254243,2254342..2254529)	Theileria annulata	3864465
TA19205	CDS	TA19205	NC_011129.2	2254679	2255243	R	signal recognition particle, putative	complement(join(2254679..2254800,2254831..2254918,2255064..2255243))	Theileria annulata	3863791
TA19200	CDS	TA19200	NC_011129.2	2255389	2256312	R	Contains a putative signal peptide; uncharacterized protein	complement(join(2255389..2255450,2255491..2255534,2255584..2255692,2255735..2255774,2255828..2255920,2255951..2256001,2256096..2256157,2256189..2256253,2256275..2256312))	Theileria annulata	3863790
TA19195	CDS	TA19195	NC_011129.2	2256544	2258445	R	The intron between ExonII & ExonIII is unsure; alternative gene model possible; 1 probable transmembrane helix predicted for TA19195 by TMHMM2.0 at aa 2-24; Signal peptide predicted for TA19195 by SignalP 2.0 HMM (Signal peptide probability 0.948, signal anchor probability 0.002) with cleavage site probability 0.552 between residues 20 and 21; seryl-trna synthetase, putative	complement(join(2256544..2256719,2256791..2257468,2257511..2258251,2258286..2258445))	Theileria annulata	3863789
TA19190	CDS	TA19190	NC_011129.2	2258656	2260440	D	Contains repeats; uncharacterized protein	2258656..2260440	Theileria annulata	3863788
TA19185	CDS	TA19185	NC_011129.2	2260513	2261270	R	uncharacterized protein	complement(join(2260513..2260584,2260631..2260768,2260798..2260836,2260868..2260889,2260974..2261068,2261131..2261206,2261230..2261270))	Theileria annulata	3863787
TA19180	CDS	TA19180	NC_011129.2	2261624	2263442	D	MORM repeat family protein, putative	join(2261624..2261912,2262045..2262335,2262509..2262605,2262681..2262859,2263052..2263120,2263171..2263442)	Theileria annulata	3863786
TA19165	CDS	TA19165	NC_011129.2	2263603	2266146	R	uncharacterized protein	complement(join(2263603..2265664,2265785..2266146))	Theileria annulata	3863783
TA19160	CDS	TA19160	NC_011129.2	2267133	2268322	D	Annotation is based on significant Pfam & SMART hits to UBX & UAS domains; Ubiquitin regulatory protein, putative	join(2267133..2267318,2267423..2267530,2267600..2268322)	Theileria annulata	3863782
TA19155	CDS	TA19155	NC_011129.2	2268651	2271974	D	rad3-like DNA helicase-related, putative	join(2268651..2268792,2268991..2269311,2269341..2269745,2269981..2270611,2270701..2271535,2271624..2271974)	Theileria annulata	3863781
TA19150	CDS	TA19150	NC_011129.2	2272399	2274966	R	uncharacterized protein	complement(join(2272399..2273954,2274051..2274966))	Theileria annulata	3863780
TA19145	CDS	TA19145	NC_011129.2	2275304	2278098	R	uncharacterized protein	complement(join(2275304..2277843,2277891..2278098))	Theileria annulata	3863779
TA19140	CDS	TA19140	NC_011129.2	2278645	2279490	D	uncharacterized protein	join(2278645..2279059,2279153..2279490)	Theileria annulata	3863778
TA19135	CDS	TA19135	NC_011129.2	2279531	2279767	R	Could a part of the previous gene; uncharacterized protein	complement(2279531..2279767)	Theileria annulata	3863777
TA19130	CDS	TA19130	NC_011129.2	2279837	2282144	R	Existence of the last 2 exons uncertain; mitochondrial processing peptidase, putative	complement(join(2279837..2279923,2279936..2279962,2280041..2280250,2280370..2280563,2280654..2280861,2280974..2281042,2281073..2281153,2281269..2281304,2281336..2281516,2281588..2281679,2281742..2281893,2281928..2282144))	Theileria annulata	3863776
TA19125	CDS	TA19125	NC_011129.2	2282312	2283000	D	uncharacterized protein	join(2282312..2282447,2282506..2282627,2282698..2282742,2282775..2282823,2282890..2282927,2282974..2283000)	Theileria annulata	3863775
TA19120	CDS	TA19120	NC_011129.2	2283399	2283885	D	This hypothetical protein may have 1 or more downstream exons; uncharacterized protein	join(2283399..2283734,2283835..2283885)	Theileria annulata	3863774
TA19110	CDS	TA19110	NC_011129.2	2285335	2287326	D	serine-threonine protein kinase, putative	join(2285335..2285795,2285832..2286453,2286542..2286684,2286721..2286883,2286930..2287027,2287085..2287145,2287192..2287326)	Theileria annulata	3863995
TA19100	CDS	TA19100	NC_011129.2	2287385	2289222	R	uncharacterized protein	complement(join(2287385..2287592,2287621..2287693,2287755..2287895,2287933..2288072,2288107..2288180,2288218..2288421,2288478..2288609,2288641..2288810,2288877..2289222))	Theileria annulata	3863994
TA19095	CDS	TA19095	NC_011129.2	2289267	2289983	R	uncharacterized protein	complement(2289267..2289983)	Theileria annulata	3863993
TA19090	CDS	TA19090	NC_011129.2	2290254	2292530	R	ATP-dependent RNA helicase, putative	complement(join(2290254..2290409,2290449..2290690,2290750..2290907,2290970..2291110,2291140..2291252,2291282..2291530,2291589..2292017,2292087..2292530))	Theileria annulata	3863992
TA19085	CDS	TA19085	NC_011129.2	2292644	2293764	D	uncharacterized protein	join(2292644..2293348,2293398..2293533,2293574..2293764)	Theileria annulata	3863991
TA19080	CDS	TA19080	NC_011129.2	2293823	2295666	D	Existence of Exon I is doubtfull; histidyl-trna synthetase, putative	join(2293823..2293830,2293858..2295389,2295455..2295666)	Theileria annulata	3863990
TA19075	CDS	TA19075	NC_011129.2	2296012	2299650	D	Contains a putative signal sequence; one small intron possible; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19075 by SignalP 2.0 HMM (Signal peptide probability 0.970, signal anchor probability 0.029) with cleavage site probability 0.650 between residues 27 and 28; uncharacterized protein	2296012..2299650	Theileria annulata	3863989
TA19070	CDS	TA19070	NC_011129.2	2300059	2302491	D	uncharacterized protein	2300059..2302491	Theileria annulata	3863988
TA19065	CDS	TA19065	NC_011129.2	2302782	2304406	R	Contains WD40 repeat elements; chromatin assembly factor 1 protein, putative	complement(join(2302782..2303087,2303116..2303199,2303262..2303295,2303327..2303438,2303497..2303579,2303616..2303658,2303691..2303738,2303770..2303825,2303995..2304140,2304173..2304263,2304294..2304406))	Theileria annulata	3863987
TA19055	CDS	TA19055	NC_011129.2	2304877	2306051	R	Contains WD40 repeat elements; SONA	complement(join(2304877..2305671,2305756..2305911,2305962..2306051))	Theileria annulata	3863985
TA19050	CDS	TA19050	NC_011129.2	2306824	2307623	R	uncharacterized protein	complement(join(2306824..2307446,2307482..2307623))	Theileria annulata	3863984
TA19045	CDS	TA19045	NC_011129.2	2307991	2308543	D	Weak Pfam hit to ribosomal L32P protein family, BLAST similarities to chloroplast 50s ribosomal protein l32; however, the evidence is not strong enough to call it a ribosomal L32-related protein; Signal peptide predicted for TA19045 by SignalP 2.0 HMM (Signal peptide probability 0.817, signal anchor probability 0.000) with cleavage site probability 0.301 between residues 15 and 16; uncharacterized protein	join(2307991..2308356,2308394..2308543)	Theileria annulata	3863983
TA19040	CDS	TA19040	NC_011129.2	2308634	2309671	D	uncharacterized protein	join(2308634..2308705,2308806..2308875,2308911..2308951,2309018..2309170,2309279..2309671)	Theileria annulata	3863982
TA19035	CDS	TA19035	NC_011129.2	2309830	2311007	R	GTPase-activating protein, putative	complement(join(2309830..2309916,2309979..2310330,2310374..2310467,2310524..2310737,2310798..2311007))	Theileria annulata	3863981
TA19030	CDS	TA19030	NC_011129.2	2311390	2312043	D	uncharacterized protein	2311390..2312043	Theileria annulata	3863980
TA19025	CDS	TA19025	NC_011129.2	2312189	2313739	R	uncharacterized protein	complement(join(2312189..2312284,2312317..2312720,2312751..2312803,2312836..2312953,2313012..2313465,2313524..2313739))	Theileria annulata	3863979
TA19020	CDS	TA19020	NC_011129.2	2314438	2315706	D	Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA19020 by TMHMM2.0 at aa 13-35; uncharacterized protein	2314438..2315706	Theileria annulata	3863978
TA19015	CDS	TA19015	NC_011129.2	2315787	2319173	R	It is possible that this hypothetical protein is composed of 2 hypothetical proteins, the first 9 exons represent the first hypothetical protein and the last three exons representing the other hypothetical protein; Part of the protein is similar to Plasmodium falciparum hypothetical protein pfe1320W; uncharacterized protein	complement(join(2315787..2315840,2315892..2315960,2316022..2317070,2317139..2317597,2317628..2317675,2317750..2318020,2318059..2318226,2318296..2318439,2318475..2318600,2318659..2318730,2318790..2318930,2318985..2319173))	Theileria annulata	3863977
TA19010	CDS	TA19010	NC_011129.2	2319545	2321581	D	1 probable transmembrane helix predicted for TA19010 by TMHMM2.0 at aa 9-31; protein disulfide isomerase precursor, putative	join(2319545..2319637,2319710..2319865,2319935..2320309,2320375..2320827,2320893..2321071,2321196..2321320,2321388..2321581)	Theileria annulata	3863976
TA19000	CDS	TA19000	NC_011129.2	2321630	2323850	R	transcriptional adaptor2-related protein, putative	complement(join(2321630..2322841,2322936..2323070,2323130..2323197,2323266..2323504,2323672..2323850))	Theileria annulata	3863634
TA18995	CDS	TA18995	NC_011129.2	2324470	2326201	D	GPI-Anchor Signal predicted for TA18995 by DGPI v2.04 with cleavage site probability 0.15599999 near 526; ubiquitin-activating enzyme e1, putative	join(2324470..2324842,2324894..2325717,2325764..2326201)	Theileria annulata	3863633
TA18990	CDS	TA18990	NC_011129.2	2326222	2328827	R	The first ~150 amino acids don't show any conservedness with other DNA-directed RNA polymerase alpha chains; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA18990 by TMHMM2.0 at aa 5-24; Signal peptide predicted for TA18990 by SignalP 2.0 HMM (Signal peptide probability 0.952, signal anchor probability 0.003) with cleavage site probability 0.785 between residues 20 and 21; DNA-directed RNA polymerase alpha chain, putative	complement(join(2326222..2326353,2326400..2326585,2326655..2326848,2326899..2327077,2327154..2327316,2327378..2327591,2327668..2327867,2327948..2328203,2328269..2328384,2328425..2328827))	Theileria annulata	3863632
TA18985	CDS	TA18985	NC_011129.2	2328953	2331098	D	No significant SMART / Pfam hit but hightly conserved with several other hypothetical proteins from diverse organisms, alternative gene model possible with the last exon being completely different; the first exon may code for a a seperate hypothetical protein; the conserved residues start from exon II in the present model; uncharacterized protein	join(2328953..2329765,2329844..2330224,2330279..2330527,2330565..2330747,2330799..2330874,2330983..2331098)	Theileria annulata	3863631
TA18980	CDS	TA18980	NC_011129.2	2332293	2333561	D	uncharacterized protein	join(2332293..2332358,2332388..2332634,2332664..2332815,2332902..2333561)	Theileria annulata	3863630
TA18975	CDS	TA18975	NC_011129.2	2334154	2337669	R	Although this protein shows FASTA and BLAST similarity to SMC proteins, there is no hit in Pfam database for SMC_N & SMC_C domains; thus this protein is annotated as possible SMC-like protein; SMC-like protein, putative	complement(join(2334154..2334234,2334266..2334418,2334451..2334603,2334634..2334768,2334820..2335014,2335071..2335703,2335773..2335897,2335943..2336018,2336071..2336178,2336208..2336318,2336387..2336437,2336482..2336557,2336612..2337030,2337061..2337168,2337207..2337357,2337388..2337474,2337506..2337669))	Theileria annulata	3863629
TA18970	CDS	TA18970	NC_011129.2	2338076	2340594	R	long-chain-fatty-acid--coa ligase, putative	complement(join(2338076..2338276,2338360..2339031,2339127..2339336,2339368..2339501,2339536..2339683,2339749..2339930,2340012..2340246,2340278..2340392,2340423..2340498,2340528..2340594))	Theileria annulata	3863628
TA18965	CDS	TA18965	NC_011129.2	2341208	2342787	D	10 probable transmembrane helices predicted for TA18965 by TMHMM2.0 at aa 16-38, 48-70, 91-113, 128-150, 190-212, 253-275, 280-299, 309-328, 348-362 and 367-389; Signal anchor predicted for TA18965 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.988) with cleavage site probability 0.004 between residues 32 and 33; GPI-Anchor Signal predicted for TA18965 by DGPI v2.04 with cleavage site probability 0.12900001 near 370; udp-N-acetylglucosamine--dolichyl-phosphate n-acetylglucosaminephosphotransferase, putative	join(2341208..2341436,2341470..2341600,2341635..2341685,2341716..2341776,2341808..2341966,2341998..2342065,2342096..2342149,2342180..2342293,2342349..2342450,2342480..2342520,2342590..2342647,2342677..2342787)	Theileria annulata	3863627
TA18960	CDS	TA18960	NC_011129.2	2342953	2346237	D	Weak Pfam hit to lactamase_B (Metallo beta lactamase superfamily); uncharacterized protein	join(2342953..2345887,2345932..2346077,2346169..2346237)	Theileria annulata	3863626
TA18955	CDS	TA18955	NC_011129.2	2346422	2347983	R	Shows moderate similarities to human / mouse immunoglobulin-binding protein 1 but does not show any Pfam hit; uncharacterized protein	complement(join(2346422..2346526,2346556..2346622,2346652..2346706,2346735..2346792,2346862..2346929,2346964..2347123,2347153..2347395,2347459..2347763,2347791..2347983))	Theileria annulata	3863625
TA18945	CDS	TA18945	NC_011129.2	2348108	2348679	D	peptidylprolyl isomerase, putative	join(2348108..2348160,2348304..2348679)	Theileria annulata	3863623
TA18940	CDS	TA18940	NC_011129.2	2348737	2350216	R	Strong Pfam hit to methyltransf_5 (MraW methylase family); s-adenosyl-methyltransferase, putative	complement(join(2348737..2348782,2348814..2348857,2348888..2349082,2349135..2349248,2349302..2349397,2349439..2349607,2349681..2349844,2349875..2350216))	Theileria annulata	3863622
TA18935	CDS	TA18935	NC_011129.2	2350375	2350837	D	Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA18935 by TMHMM2.0 at aa 13-30 and 70-89; uncharacterized protein	join(2350375..2350524,2350595..2350837)	Theileria annulata	3863621
TA18930	CDS	TA18930	NC_011129.2	2351182	2354193	D	One intron possible; uncharacterized protein	2351182..2354193	Theileria annulata	3863620
TA18925	CDS	TA18925	NC_011129.2	2354515	2357658	R	uncharacterized protein	complement(join(2354515..2357510,2357622..2357658))	Theileria annulata	3863619
TA18920	CDS	TA18920	NC_011129.2	2358117	2359437	D	uncharacterized protein	join(2358117..2358221,2358258..2358329,2358414..2358496,2358581..2358833,2358927..2359016,2359051..2359317,2359369..2359437)	Theileria annulata	3863618
TA18915	CDS	TA18915	NC_011129.2	2359666	2360144	D	uncharacterized protein	join(2359666..2359801,2359887..2359957,2360037..2360144)	Theileria annulata	3863617
TA18910	CDS	TA18910	NC_011129.2	2360611	2361707	D	One or two additional N-terminal exons possible; uncharacterized protein	join(2360611..2360689,2360721..2360781,2360867..2360957,2360987..2361076,2361107..2361187,2361244..2361364,2361428..2361528,2361576..2361707)	Theileria annulata	3864327
TA18905	CDS	TA18905	NC_011129.2	2361741	2363435	R	Weak SMART hit to KOW (Kyprides, Ouzounis, Woese) motif; uncharacterized protein	complement(join(2361741..2361784,2361822..2361870,2361984..2362024,2362056..2362161,2362206..2362278,2362334..2362574,2362645..2363081,2363131..2363252,2363310..2363435))	Theileria annulata	3864326
TA18900	CDS	TA18900	NC_011129.2	2363813	2365539	D	uncharacterized protein	join(2363813..2364013,2364046..2364545,2364591..2365539)	Theileria annulata	3864325
TA20080	CDS	TA20080	NC_011129.2	2365933	2366882	D	Contains 1 putative transmembrane domain; uncharacterized protein	join(2365933..2366040,2366102..2366153,2366210..2366337,2366415..2366552,2366612..2366737,2366790..2366882)	Theileria annulata	3864461
TA20075	CDS	TA20075	NC_011129.2	2367076	2368144	R	No Pfam hit; So annotated as cytochrome c oxidase assembly protein-like, based on FASTA and BLAST similarities; 1 probable transmembrane helix predicted for TA20075 by TMHMM2.0 at aa 98-120; cytochrome c oxidase assembly protein-like, putative	complement(join(2367076..2367188,2367254..2367319,2367351..2367443,2367474..2367626,2367712..2368144))	Theileria annulata	3864460
TA20070	CDS	TA20070	NC_011129.2	2368501	2371006	R	Alternative gene model possible, no hit to SMART / Pfam domains; ATP-dependent RNA helicase-related protein, putative	complement(join(2368501..2368672,2368766..2369232,2369306..2369608,2369665..2370092,2370152..2370640,2370754..2371006))	Theileria annulata	3864459
TA20065	CDS	TA20065	NC_011129.2	2371349	2372103	R	Moderate hit to Pfam DUF232 domain; prefoldin-like protein, putative	complement(join(2371349..2371475,2371563..2371713,2371766..2371907,2371993..2372103))	Theileria annulata	3864458
TA20060	CDS	TA20060	NC_011129.2	2372231	2373364	R	fructose-bisphosphate aldolase 2, putative	complement(2372231..2373364)	Theileria annulata	3864457
TA20055	CDS	TA20055	NC_011129.2	2373831	2375954	R	No SMART / Pfam hit; similarities to methyl transferases and shk1 kinase-binding protein 1 from human and shk1 kinase-binding protein from S. pombe; methyl transferase-like protein, putative	complement(2373831..2375954)	Theileria annulata	3864456
TA20050	CDS	TA20050	NC_011129.2	2376580	2379863	D	Weak hit to von Willebrand Factor type A domain; protein transport protein sec24-like, putative	join(2376580..2376766,2376796..2376852,2376921..2377094,2377146..2377382,2377430..2377797,2377858..2378052,2378098..2378166,2378236..2378542,2378614..2378874,2378937..2379407,2379472..2379863)	Theileria annulata	3864455
TA20045	CDS	TA20045	NC_011129.2	2380263	2382629	D	uncharacterized protein	2380263..2382629	Theileria annulata	3864454
TA20040	CDS	TA20040	NC_011129.2	2382698	2383452	D	Contains 2 putative transmembrane domains and a putative signal peptide; 3 probable transmembrane helices predicted for TA20040 by TMHMM2.0 at aa 13-32, 47-69 and 90-109; Signal anchor predicted for TA20040 by SignalP 2.0 HMM (Signal peptide probability 0.314, signal anchor probability 0.675) with cleavage site probability 0.166 between residues 33 and 34; uncharacterized protein	join(2382698..2382793,2382825..2382888,2382981..2383043,2383079..2383117,2383148..2383180,2383240..2383284,2383361..2383452)	Theileria annulata	3864453
TA20035	CDS	TA20035	NC_011129.2	2383714	2385650	D	Contains two putative transmembrane domains; 2 probable transmembrane helices predicted for TA20035 by TMHMM2.0 at aa 219-241 and 271-290; uncharacterized protein	join(2383714..2383833,2383866..2383923,2383953..2384263,2384331..2384384,2384468..2384619,2384693..2384803,2384885..2385650)	Theileria annulata	3864452
TA20030	CDS	TA20030	NC_011129.2	2385809	2386327	R	Contains conserved C-terminus; SMART; uncharacterized protein	complement(2385809..2386327)	Theileria annulata	3864451
TA20025	CDS	TA20025	NC_011129.2	2386811	2387599	D	1 probable transmembrane helix predicted for TA20025 by TMHMM2.0 at aa 210-232; cytochrome c oxidase subunit 2a, putative	2386811..2387599	Theileria annulata	3864450
TA20020	CDS	TA20020	NC_011129.2	2388232	2396649	D	uncharacterized protein	join(2388232..2391112,2391177..2394064,2394143..2394725,2394795..2395415,2395637..2396092,2396165..2396649)	Theileria annulata	3864449
TA20015	CDS	TA20015	NC_011129.2	2396802	2398575	R	No Pfam or SMART or TIGRfam hits; so annotated as polynucleotide kinase 3'-phosphatase-like protein, based on the FASTA and BLAST evidence; polynucleotide kinase 3'-phosphatase-like protein, putative	complement(join(2396802..2396996,2397046..2397252,2397287..2397450,2397530..2397880,2398071..2398198,2398244..2398461,2398492..2398575))	Theileria annulata	3864448
TA20010	CDS	TA20010	NC_011129.2	2398834	2401427	D	uncharacterized protein	join(2398834..2400044,2400134..2401427)	Theileria annulata	3864447
TA20005	CDS	TA20005	NC_011129.2	2401919	2404670	R	Contains RNA-binding HAT (Half A TPR) repeat units, found in RNA-processing proteins; rna-processing protein, putative	complement(join(2401919..2402107,2402219..2403359,2403400..2403500,2403549..2403726,2403799..2404670))	Theileria annulata	3864446
TA20000	CDS	TA20000	NC_011129.2	2405035	2405980	D	Contains hits to Pfam RRM and WW domains; rna-binding protein, putative	join(2405035..2405317,2405422..2405718,2405796..2405980)	Theileria annulata	3864445
TA19995	CDS	TA19995	NC_011129.2	2406192	2407057	R	Very wqeak similarity to t-SNARE SMART domain, contains a putative transmembrane domain; 1 probable transmembrane helix predicted for TA19995 by TMHMM2.0 at aa 192-214; vesicle transport protein, putative	complement(join(2406192..2406464,2406498..2406583,2406613..2406700,2406768..2406833,2406863..2406924,2406964..2407057))	Theileria annulata	3864169
TA19990	CDS	TA19990	NC_011129.2	2408217	2410342	D	protein phosphatase 2A regulatory subunit B, putative	join(2408217..2409020,2409086..2410342)	Theileria annulata	3864168
TA19985	CDS	TA19985	NC_011129.2	2410677	2411504	D	uncharacterized protein	join(2410677..2411084,2411138..2411281,2411358..2411504)	Theileria annulata	3864167
TA19980	CDS	TA19980	NC_011129.2	2411556	2412138	R	uncharacterized protein	complement(join(2411556..2411698,2411738..2411854,2411892..2412138))	Theileria annulata	3864166
TA19975	CDS	TA19975	NC_011129.2	2412782	2413873	D	Contains putative three transmembrane domains, moderatly similar to C-terminal half of P. falciparum hypothetical protein mal6p1.308; 3 probable transmembrane helices predicted for TA19975 by TMHMM2.0 at aa 233-255, 267-289 and 309-328; integral membrane protein, putative	2412782..2413873	Theileria annulata	3864165
TA19970	CDS	TA19970	NC_011129.2	2413933	2414330	R	uncharacterized protein	complement(join(2413933..2414120,2414153..2414242,2414279..2414330))	Theileria annulata	3864164
TA19965	CDS	TA19965	NC_011129.2	2415551	2420951	D	ubiquitin-related protein, putative	join(2415551..2415682,2415717..2416708,2416748..2420265,2420300..2420409,2420443..2420738,2420789..2420951)	Theileria annulata	3864163
TA19960	CDS	TA19960	NC_011129.2	2421125	2421795	R	Weak BLAST similarity to Homo sapiens general transcription factor ii-i; uncharacterized protein	complement(join(2421125..2421288,2421328..2421465,2421531..2421795))	Theileria annulata	3864162
TA19955	CDS	TA19955	NC_011129.2	2422006	2424308	D	Weak Pfam hit to Nol1_Nop2_SUN family; methyl transferase, putative	join(2422006..2422618,2422648..2422725,2422763..2422864,2422917..2423104,2423161..2423223,2423296..2423587,2423641..2424308)	Theileria annulata	3864161
TA19950	CDS	TA19950	NC_011129.2	2424346	2425019	R	uncharacterized protein	complement(join(2424346..2424626,2424701..2424806,2424852..2425019))	Theileria annulata	3864160
TA19945	CDS	TA19945	NC_011129.2	2425160	2427892	R	uncharacterized protein	complement(2425160..2427892)	Theileria annulata	3864159
TA19940	CDS	TA19940	NC_011129.2	2428153	2428844	D	orotate phosphoribosyltransferase, putative	join(2428153..2428398,2428437..2428713,2428750..2428844)	Theileria annulata	3864158
TA19935	CDS	TA19935	NC_011129.2	2428901	2431674	R	importin beta-1 subunit, putative	complement(join(2428901..2429069,2429140..2430091,2430174..2431674))	Theileria annulata	3864157
TA19930	CDS	TA19930	NC_011129.2	2432934	2433165	D	Alternative first exon possible; Signal peptide predicted for TA19930 by SignalP 2.0 HMM (Signal peptide probability 0.897, signal anchor probability 0.000) with cleavage site probability 0.536 between residues 26 and 27; uncharacterized protein	join(2432934..2432950,2432982..2433165)	Theileria annulata	3864156
TA19925	CDS	TA19925	NC_011129.2	2433367	2435991	R	Jumonji family zinc finger protein, putative	complement(join(2433367..2433759,2433814..2433968,2433997..2434134,2434197..2434310,2434341..2434408,2434475..2434609,2434679..2434982,2435013..2435198,2435228..2435378,2435425..2435549,2435588..2435702,2435746..2435991))	Theileria annulata	3864155
TA19920	CDS	TA19920	NC_011129.2	2437801	2440293	R	uncharacterized protein	complement(2437801..2440293)	Theileria annulata	3864154
TA19915	CDS	TA19915	NC_011129.2	2441028	2441497	R	GPI-Anchor Signal predicted for TA19915 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(2441028..2441284,2441378..2441469,2441484..2441497))	Theileria annulata	3864153
TA19910	CDS	TA19910	NC_011129.2	2441641	2441910	R	acyl-coa-binding protein, putative	complement(2441641..2441910)	Theileria annulata	3864152
TA19905	CDS	TA19905	NC_011129.2	2442099	2442436	R	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19905 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.664 between residues 18 and 19; 50s ribosomal protein l33, putative	complement(join(2442099..2442295,2442331..2442436))	Theileria annulata	3864151
TA19900	CDS	TA19900	NC_011129.2	2442599	2444827	D	ABC1 family protein, putative	join(2442599..2443022,2443055..2443117,2443194..2443252,2443283..2443367,2443399..2443523,2443555..2443641,2443677..2443991,2444032..2444142,2444174..2444243,2444313..2444377,2444408..2444510,2444568..2444626,2444657..2444827)	Theileria annulata	3864386
TA19895	CDS	TA19895	NC_011129.2	2444947	2446172	R	protein phosphatase 2c, putative	complement(join(2444947..2445093,2445128..2445281,2445331..2445463,2445526..2445851,2445884..2446010,2446040..2446172))	Theileria annulata	3864385
TA19890	CDS	TA19890	NC_011129.2	2446260	2447880	R	uncharacterized protein	complement(join(2446260..2446432,2446514..2446811,2446847..2447149,2447180..2447259,2447296..2447450,2447484..2447637,2447679..2447880))	Theileria annulata	3864384
TA19885	CDS	TA19885	NC_011129.2	2448095	2448582	D	Moderate Pfam hit to NifU-like domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19885 by SignalP 2.0 HMM (Signal peptide probability 0.971, signal anchor probability 0.000) with cleavage site probability 0.863 between residues 17 and 18; Nifu-like protein, putative	join(2448095..2448415,2448451..2448582)	Theileria annulata	3864383
TA19880	CDS	TA19880	NC_011129.2	2448633	2450223	R	uncharacterized protein	complement(join(2448633..2449091,2449120..2449357,2449391..2449593,2449623..2449724,2449760..2449847,2449890..2449991,2450021..2450223))	Theileria annulata	3864382
TA19875	CDS	TA19875	NC_011129.2	2450418	2453747	D	uncharacterized protein	join(2450418..2450685,2450755..2450877,2450911..2452556,2452590..2453747)	Theileria annulata	3864381
TA19870	CDS	TA19870	NC_011129.2	2453840	2454729	R	Contains putative signal peptide; 1 probable transmembrane helix predicted for TA19870 by TMHMM2.0 at aa 7-29; uncharacterized protein	complement(join(2453840..2453950,2453972..2454247,2454280..2454729))	Theileria annulata	3864380
TA19865	CDS	TA19865	NC_011129.2	2455778	2456314	R	Signal peptide predicted for TA19865 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.024) with cleavage site probability 0.890 between residues 23 and 24; surface protein d precursor	complement(2455778..2456314)	Theileria annulata	3864379
TA19860	CDS	TA19860	NC_011129.2	2457168	2459000	D	DEAD box RNA helicase, putative	join(2457168..2457357,2457392..2457449,2457490..2457651,2457684..2457783,2457816..2457930,2457962..2458047,2458080..2458268,2458299..2458480,2458514..2458751,2458785..2458900,2458931..2459000)	Theileria annulata	3864378
TA19855	CDS	TA19855	NC_011129.2	2459059	2461148	D	GTPase, putative	join(2459059..2459274,2459310..2459418,2459462..2459538,2459570..2459635,2459666..2460004,2460033..2460088,2460120..2460202,2460233..2460371,2460416..2460726,2460760..2460817,2460920..2461051,2461082..2461148)	Theileria annulata	3864377
TA19850	CDS	TA19850	NC_011129.2	2461259	2461744	D	uncharacterized protein	2461259..2461744	Theileria annulata	3864376
TA19845	CDS	TA19845	NC_011129.2	2461794	2463745	R	Existence of the intron is uncertain, thus alternative gene model possible; weak similarity to C2H2-zinc finger Pfam domain; uncharacterized protein	complement(join(2461794..2461901,2462009..2462179,2462207..2463745))	Theileria annulata	3864375
TA19840	CDS	TA19840	NC_011129.2	2463993	2465321	R	uncharacterized protein	complement(join(2463993..2464154,2464187..2464417,2464451..2464540,2464571..2464929,2464961..2465231,2465265..2465321))	Theileria annulata	3864374
TA19835	CDS	TA19835	NC_011129.2	2465691	2467574	D	small overlap at the 3' end with gene TA19830; uncharacterized protein	2465691..2467574	Theileria annulata	3864373
TA19830	CDS	TA19830	NC_011129.2	2467571	2469353	R	Contains Kelch domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA19830 by TMHMM2.0 at aa 424-442; Signal peptide predicted for TA19830 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.341 between residues 22 and 23; small overlap at the 3' end with gene TA19835; Kelch-domain containing protein, putative	complement(join(2467571..2467784,2467814..2467880,2467929..2468042,2468073..2468176,2468206..2468287,2468316..2468386,2468417..2468435,2468467..2468509,2468539..2468588,2468620..2468725,2468758..2468882,2468918..2469097,2469141..2469212,2469251..2469353))	Theileria annulata	3864372
TA19825	CDS	TA19825	NC_011129.2	2469812	2470517	D	uncharacterized protein	join(2469812..2469895,2469930..2470517)	Theileria annulata	3864371
TA19824	CDS	TA19824	NC_011129.2	2470789	2470986	D	uncharacterized protein	2470789..2470986	Theileria annulata	3864370
TA19823	CDS	TA19823	NC_011129.2	2471231	2471653	D	uncharacterized protein	join(2471231..2471341,2471372..2471653)	Theileria annulata	3864369
TA19820	CDS	TA19820	NC_011129.2	2471738	2472558	R	Contains 1 putative membrane-spanning region; 1 probable transmembrane helix predicted for TA19820 by TMHMM2.0 at aa 5-27; uncharacterized protein	complement(join(2471738..2471845,2471861..2471951,2471969..2472091,2472121..2472226,2472275..2472334,2472380..2472403,2472456..2472558))	Theileria annulata	3864368
TA19815	CDS	TA19815	NC_011129.2	2472841	2473244	D	uncharacterized protein	join(2472841..2472889,2472932..2472948,2472981..2473244)	Theileria annulata	3864367
TA19810	CDS	TA19810	NC_011129.2	2473371	2474828	R	glucokinase, putative	complement(2473371..2474828)	Theileria annulata	3863906
TA19805	CDS	TA19805	NC_011129.2	2475280	2476142	R	uncharacterized protein	complement(join(2475280..2475556,2475589..2475847,2475881..2476142))	Theileria annulata	3863905
TA19800	CDS	TA19800	NC_011129.2	2476204	2477661	R	hexokinase 1, putative	complement(2476204..2477661)	Theileria annulata	3863904
TA19795	CDS	TA19795	NC_011129.2	2478107	2479559	D	uncharacterized protein	join(2478107..2478233,2478271..2478603,2478634..2479559)	Theileria annulata	3863903
TA19790	CDS	TA19790	NC_011129.2	2479580	2480602	R	ribonuclease h1 large subunit, putative	complement(join(2479580..2479791,2479822..2479957,2479989..2480066,2480100..2480187,2480220..2480346,2480380..2480493,2480524..2480602))	Theileria annulata	3863902
TA19785	CDS	TA19785	NC_011129.2	2480941	2481952	D	uncharacterized protein	join(2480941..2481591,2481620..2481952)	Theileria annulata	3863901
TA19780	CDS	TA19780	NC_011129.2	2482342	2483306	D	u3 small nucleolar ribonucleoprotein, putative	join(2482342..2482576,2482606..2482800,2482830..2482945,2482977..2483306)	Theileria annulata	3863900
TA19775	CDS	TA19775	NC_011129.2	2483342	2484718	R	uncharacterized protein	complement(2483342..2484718)	Theileria annulata	3863899
TA19770	CDS	TA19770	NC_011129.2	2485277	2486906	D	polyA polymerase, putative	join(2485277..2486194,2486226..2486462,2486493..2486606,2486637..2486906)	Theileria annulata	3863898
TA19765	CDS	TA19765	NC_011129.2	2487342	2489224	R	Moderate FASTA hit to origin recognition complexes from diverse origin such as P. falciparum, X. laevis and M. musculus; origin recognition complex-like protein, putative	complement(join(2487342..2487416,2487447..2487576,2487608..2487760,2487791..2487903,2487934..2488053,2488086..2488120,2488233..2488365,2488393..2488460,2488490..2488650,2488683..2489224))	Theileria annulata	3863897
TA19760	CDS	TA19760	NC_011129.2	2489952	2491199	D	Signal peptide predicted for TA19760 by SignalP 2.0 HMM (Signal peptide probability 0.900, signal anchor probability 0.026) with cleavage site probability 0.318 between residues 26 and 27; DNAJ protein, putative	join(2489952..2490659,2490691..2490857,2490923..2491199)	Theileria annulata	3863896
TA19755	CDS	TA19755	NC_011129.2	2491298	2493976	D	uncharacterized protein	join(2491298..2491588,2491624..2493188,2493235..2493976)	Theileria annulata	3863895
TA19750	CDS	TA19750	NC_011129.2	2494523	2496121	D	Weak match to P. falciparum DNA-directed RNA polymerase beta' chain; 1 probable transmembrane helix predicted for TA19750 by TMHMM2.0 at aa 375-397; uncharacterized protein	2494523..2496121	Theileria annulata	3863894
TA19745	CDS	TA19745	NC_011129.2	2496246	2498204	R	1 probable transmembrane helix predicted for TA19745 by TMHMM2.0 at aa 2-24; aspartyl/glutamyl-trna amido transferase, putative	complement(2496246..2498204)	Theileria annulata	3863893
TA19740	CDS	TA19740	NC_011129.2	2498488	2499718	R	alkylated DNA repair protein, putative	complement(join(2498488..2498726,2498777..2498853,2498884..2499020,2499056..2499277,2499309..2499388,2499421..2499718))	Theileria annulata	3863892
TA19735	CDS	TA19735	NC_011129.2	2499800	2500864	R	DNA-directed RNA polymerase ii, putative	complement(2499800..2500864)	Theileria annulata	3863891
TA19730	CDS	TA19730	NC_011129.2	2501213	2502596	R	TapCf04.q1c.cand.11 - score = 35.73; 1 probable transmembrane helix predicted for TA19730 by TMHMM2.0 at aa 7-29; uncharacterized protein	complement(join(2501213..2501886,2501924..2502034,2502064..2502102,2502133..2502236,2502266..2502535,2502568..2502596))	Theileria annulata	3863890
TA19725	CDS	TA19725	NC_011129.2	2503329	2505533	R	uncharacterized protein	complement(2503329..2505533)	Theileria annulata	3863889
TA19720	CDS	TA19720	NC_011129.2	2505846	2507638	D	1 probable transmembrane helix predicted for TA19720 by TMHMM2.0 at aa 385-407; uncharacterized protein	join(2505846..2506010,2506041..2506260,2506446..2506546,2506578..2507069,2507146..2507278,2507442..2507638)	Theileria annulata	3863888
TA19715	CDS	TA19715	NC_011129.2	2508195	2511038	D	cysteine desulfurase, putative	join(2508195..2509305,2509372..2509564,2509711..2509770,2509805..2509974,2510114..2510300,2510372..2511038)	Theileria annulata	3863868
TA19710	CDS	TA19710	NC_011129.2	2511368	2518525	D	uncharacterized protein	join(2511368..2512334,2512421..2513539,2513645..2514014,2514047..2515644,2515719..2518266,2518339..2518525)	Theileria annulata	3863867
TA19670	CDS	TA19670	NC_011129.2	2518636	2520274	R	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19670 by SignalP 2.0 HMM (Signal peptide probability 0.843, signal anchor probability 0.033) with cleavage site probability 0.520 between residues 23 and 24; uncharacterized protein	complement(join(2518636..2518850,2518917..2519679,2519750..2520274))	Theileria annulata	3863860
TA19615	CDS	TA19615	NC_011129.2	2520454	2521731	R	uncharacterized protein	complement(join(2520454..2520818,2520960..2521731))	Theileria annulata	3863849
TA19560	CDS	TA19560	NC_011129.2	2521926	2526105	R	uncharacterized protein	complement(join(2521926..2522153,2522301..2522506,2522644..2522719,2522846..2522878,2522908..2523593,2523710..2523908,2523939..2524010,2524140..2524332,2524435..2524997,2525078..2525333,2525365..2525430,2525518..2525623,2525706..2525815,2525847..2525859,2525913..2526105))	Theileria annulata	3864043
TA19555	CDS	TA19555	NC_011129.2	2527089	2529927	D	Similar to several sortilin-like proteins; 1 probable transmembrane helix predicted for TA19555 by TMHMM2.0 at aa 769-788; sortilin-like protein, putative	join(2527089..2528393,2528521..2529511,2529635..2529927)	Theileria annulata	3864042
TA19450	CDS	TA19450	NC_011129.2	2530391	2532732	R	uncharacterized protein	complement(join(2530391..2530625,2530717..2530982,2531022..2531127,2531202..2531924,2531956..2532096,2532239..2532732))	Theileria annulata	3863643
TA19445	CDS	TA19445	NC_011129.2	2533392	2535272	D	1 probable transmembrane helix predicted for TA19445 by TMHMM2.0 at aa 13-35; GPI-Anchor Signal predicted for TA19445 by DGPI v2.04 with cleavage site probability 0.12900001 near 609; uncharacterized protein	2533392..2535272	Theileria annulata	3863642
TA19390	CDS	TA19390	NC_011129.2	2535697	2537829	D	1 probable transmembrane helix predicted for TA19390 by TMHMM2.0 at aa 606-628; uncharacterized protein	2535697..2537829	Theileria annulata	3864499
TA19335	CDS	TA19335	NC_011129.2	2538103	2539300	D	exosome complex exonuclease, putative	join(2538103..2538267,2538298..2538543,2538575..2538679,2538710..2538777,2538809..2538944,2539024..2539119,2539148..2539300)	Theileria annulata	3864488
TA19280	CDS	TA19280	NC_011129.2	2539605	2540114	D	1 probable transmembrane helix predicted for TA19280 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA19280 by SignalP 2.0 HMM (Signal peptide probability 0.838, signal anchor probability 0.022) with cleavage site probability 0.378 between residues 23 and 24; uncharacterized protein	join(2539605..2539738,2539793..2539875,2539906..2540114)	Theileria annulata	3864478
TA19175	CDS	TA19175	NC_011129.2	2540622	2545199	R	10 probable transmembrane helices predicted for TA19175 by TMHMM2.0 at aa 140-162, 174-196, 289-311, 318-340, 397-419, 837-859, 900-922, 959-981, 996-1018 and 1082-1104; ABC transporter protein, putative	complement(2540622..2545199)	Theileria annulata	3863785
TA19170	CDS	TA19170	NC_011129.2	2546359	2549297	D	1 probable transmembrane helix predicted for TA19170 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA19170 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.606 between residues 22 and 23; uncharacterized protein	join(2546359..2547632,2547674..2549297)	Theileria annulata	3863784
TA19115	CDS	TA19115	NC_011129.2	2550478	2557515	D	TapCf04.q1c.C.cand.126 - score = 115.76; Signal anchor predicted for TA19115 by SignalP 2.0 HMM (Signal peptide probability 0.238, signal anchor probability 0.656) with cleavage site probability 0.195 between residues 28 and 29; SfiI-subtelomeric fragment related protein family member, putative	2550478..2557515	Theileria annulata	3863773
TA19060	CDS	TA19060	NC_011129.2	2557972	2559012	D	Theileria-specific sub-telomeric protein, SVSP family	2557972..2559012	Theileria annulata	3863986
TA19005	CDS	TA19005	NC_011129.2	2559353	2561176	D	Signal peptide predicted for TA19005 by SignalP 2.0 HMM (Signal peptide probability 0.751, signal anchor probability 0.000) with cleavage site probability 0.550 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family	2559353..2561176	Theileria annulata	3863635
TA18950	CDS	TA18950	NC_011129.2	2561444	2563261	D	1 probable transmembrane helix predicted for TA18950 by TMHMM2.0 at aa 5-22; Theileria-specific sub-telomeric protein, SVSP family	2561444..2563261	Theileria annulata	3863624
TA18895	CDS	TA18895	NC_011129.2	2563483	2564892	D	Theileria-specific sub-telomeric protein, SVSP family	2563483..2564892	Theileria annulata	3864324
TA18890	CDS	TA18890	NC_011129.2	2565128	2566489	D	Theileria-specific sub-telomeric protein, SVSP family	2565128..2566489	Theileria annulata	3864323
TA18885	CDS	TA18885	NC_011129.2	2566702	2568492	D	Signal peptide predicted for TA18885 by SignalP 2.0 HMM (Signal peptide probability 0.922, signal anchor probability 0.019) with cleavage site probability 0.757 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family	2566702..2568492	Theileria annulata	3864322
TA18880	CDS	TA18880	NC_011129.2	2569016	2569894	D	Signal peptide predicted for TA18880 by SignalP 2.0 HMM (Signal peptide probability 0.662, signal anchor probability 0.001) with cleavage site probability 0.342 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	2569016..2569894	Theileria annulata	3864321
TA18875	CDS	TA18875	NC_011129.2	2570855	2571949	D	SfiI-subtelomeric fragment related protein family member, putative	2570855..2571949	Theileria annulata	3864320
TA18870	CDS	TA18870	NC_011129.2	2572786	2575830	R	1 probable transmembrane helix predicted for TA18870 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA18870 by SignalP 2.0 HMM (Signal peptide probability 0.201, signal anchor probability 0.796) with cleavage site probability 0.081 between residues 25 and 26; uncharacterized protein	complement(2572786..2575830)	Theileria annulata	3864319
TA18865	CDS	TA18865	NC_011129.2	2577067	2578575	D	Proline-rich hypothetical protein; Signal peptide predicted for TA18865 by SignalP 2.0 HMM (Signal peptide probability 0.845, signal anchor probability 0.040) with cleavage site probability 0.798 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family	2577067..2578575	Theileria annulata	3864318
TA18860	CDS	TA18860	NC_011129.2	2578905	2581529	D	Signal peptide predicted for TA18860 by SignalP 2.0 HMM (Signal peptide probability 0.977, signal anchor probability 0.020) with cleavage site probability 0.594 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family	2578905..2581529	Theileria annulata	3864317
TA18855	CDS	TA18855	NC_011129.2	2582678	2589937	D	Signal peptide predicted for TA18855 by SignalP 2.0 HMM (Signal peptide probability 0.841, signal anchor probability 0.001) with cleavage site probability 0.778 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	2582678..2589937	Theileria annulata	3864316
TA17350	CDS	TA17350	NW_001091930.1	500	5080	D	Tap-921d01.p1c.cand.1 - score = 61.16; SMART 11 transmembrane domains at aa 141-160, 175-197, 286-308, 323-345, 401-423, 443-465, 838-860, 901-923, 960-982, 997-1019, 1086-1108; 2 AAA (SM0382) domains at aa 549-736, E()=1.09e+00; 1265-1443, E()=7.27e-07; 11 probable transmembrane helices predicted for TA17350 by TMHMM2.0 at aa 141-160, 175-197, 286-308, 323-345, 401-423, 443-465, 838-860, 901-923, 960-982, 997-1019 and 1086-1108; (subtelomeric) ABC-transporter protein family member, putative	500..5080	Theileria annulata	3864543
TA17355	CDS	TA17355	NW_001091930.1	5889	11789	R	Tap-921d01.p1c.C.cand.10 - score = 111.55; Signal peptide predicted for TA17355 by SignalP 2.0 HMM (Signal peptide probability 0.911, signal anchor probability 0.000) with cleavage site probability 0.889 between residues 20 and 21; SfiI-subtelomeric fragment related protein family member, putative	complement(5889..11789)	Theileria annulata	3864544
TA09765	CDS	TA09765	NW_001091930.1	14336	15378	D	SfiI-subtelomeric fragment related protein family member, putative	14336..>15378	Theileria annulata	3864542
TA17491	CDS	TA17491	NW_001091931.1	1	3616	D	uncharacterized protein	<1..3616	Theileria annulata	3864549
TA17490	CDS	TA17490	NW_001091931.1	4080	4844	D	uncharacterized protein	4080..4844	Theileria annulata	3864548
TA17485	CDS	TA17485	NW_001091931.1	6210	7442	D	Signal peptide predicted for TA17485 by SignalP 2.0 HMM (Signal peptide probability 0.642, signal anchor probability 0.311) with cleavage site probability 0.504 between residues 22 and 23; Theileria-specific sub-telomeric protein, SVSP family	6210..7442	Theileria annulata	3864547
TA17480	CDS	TA17480	NW_001091931.1	7729	9285	D	TapBAC05a05.q1k.C.cand.5 - score = 38.18; SMART 1 transmembrane domain at aa 15-34; SMART 1 transmembrane domain at aa 21-38; It is possible that this one is a pseudogene as there is a stop codon in the middle of the gene and the present model makes it as a two-exon gene; 1 probable transmembrane helix predicted for TA17480 by TMHMM2.0 at aa 21-38; Signal anchor predicted for TA17480 by SignalP 2.0 HMM (Signal peptide probability 0.007, signal anchor probability 0.658) with cleavage site probability 0.006 between residues 37 and 38; Theileria-specific sub-telomeric protein, SVSP family	join(7729..8093,8421..9285)	Theileria annulata	3864546
TA17475	CDS	TA17475	NW_001091931.1	9605	10987	D	Signal peptide predicted for TA17475 by SignalP 2.0 HMM (Signal peptide probability 0.981, signal anchor probability 0.016) with cleavage site probability 0.564 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family	9605..10987	Theileria annulata	3864545
TA17358	CDS	TA17358	NW_001091932.1	3423	10436	R	uncharacterized protein	complement(3423..10436)	Theileria annulata	3864551
TA17346	CDS	TA17346	NW_001091932.1	11836	12928	R	uncharacterized protein	complement(11836..>12928)	Theileria annulata	3864550
TA16055	CDS	TA16055	NC_011099.1	3563	7171	R	chr2.cand.535 - hypothetical temomere family protein; Signal peptide predicted for TA16055 by SignalP 2.0 HMM (Signal peptide probability 0.975, signal anchor probability 0.000) with cleavage site probability 0.696 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	complement(3563..7171)	Theileria annulata	3862307
TA16050	CDS	TA16050	NC_011099.1	8106	23891	R	chr2.cand.534 - signal peptide; Signal peptide predicted for TA16050 by SignalP 2.0 HMM (Signal peptide probability 0.977, signal anchor probability 0.000) with cleavage site probability 0.682 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	complement(8106..23891)	Theileria annulata	3862306
TA16045	CDS	TA16045	NC_011099.1	24579	26027	R	chr2.cand.533 - signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16045 by SignalP 2.0 HMM (Signal peptide probability 0.931, signal anchor probability 0.049) with cleavage site probability 0.901 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(24579..26027)	Theileria annulata	3862305
TA16040	CDS	TA16040	NC_011099.1	27623	29470	R	chr2.cand.532 - signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16040 by SignalP 2.0 HMM (Signal peptide probability 0.915, signal anchor probability 0.000) with cleavage site probability 0.699 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(27623..29470)	Theileria annulata	3862304
TA16035	CDS	TA16035	NC_011099.1	29797	31008	R	chr2.cand.531 - signal peptide, telomere P,Q-rich family; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(29797..31008)	Theileria annulata	3862303
TA16030	CDS	TA16030	NC_011099.1	31417	33132	R	chr2.cand.530 -signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16030 by SignalP 2.0 HMM (Signal peptide probability 0.780, signal anchor probability 0.065) with cleavage site probability 0.687 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(31417..33132)	Theileria annulata	3861852
TA16025	CDS	TA16025	NC_011099.1	33419	35101	R	chr2.cand.529 - signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16025 by SignalP 2.0 HMM (Signal peptide probability 0.935, signal anchor probability 0.000) with cleavage site probability 0.723 between residues 18 and 19; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(33419..35101)	Theileria annulata	3861851
TA16020	CDS	TA16020	NC_011099.1	35497	36564	R	chr2.cand.528 - signal peptide; secreted protein, putative; Signal peptide predicted for TA16020 by SignalP 2.0 HMM (Signal peptide probability 0.986, signal anchor probability 0.013) with cleavage site probability 0.808 between residues 23 and 24; uncharacterized protein	complement(35497..36564)	Theileria annulata	3861850
TA16015	CDS	TA16015	NC_011099.1	38170	42720	D	chr2.C.cand.4 - ABC transporter; 10 probable transmembrane helices predicted for TA16015 by TMHMM2.0 at aa 140-162, 174-196, 289-311, 318-340, 397-419, 439-461, 842-859, 904-926, 995-1017 and 1078-1100; (subtelomeric) ABC-transporter protein family member, putative	38170..42720	Theileria annulata	3861849
TA16010	CDS	TA16010	NC_011099.1	43190	46132	R	chr2.cand.527 - signal peptide, hypothetical protein; secreted protein, putative; 1 probable transmembrane helix predicted for TA16010 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA16010 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.606 between residues 22 and 23; uncharacterized protein	complement(join(43190..44333,44379..44816,44856..46132))	Theileria annulata	3861848
TA16005	CDS	TA16005	NC_011099.1	47220	48503	R	signal peptide, transmembrane protein; transmembrane protein, putative; 1 probable transmembrane helix predicted for TA16005 by TMHMM2.0 at aa 405-426; Signal peptide predicted for TA16005 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.000) with cleavage site probability 0.872 between residues 18 and 19; GPI-Anchor Signal predicted for TA16005 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(47220..48503)	Theileria annulata	3861847
TA16000	CDS	TA16000	NC_011099.1	49046	49760	R	chr2.cand.525 - 40s ribosomal protein s8; 40S ribosomal protein S8, putative	complement(join(49046..49236,49280..49432,49550..49760))	Theileria annulata	3861846
TA15985	CDS	TA15985	NC_011099.1	50479	51160	D	all_bases.C.cand.1316 - hypothetical protein; uncharacterized protein	join(50479..50681,50719..50776,50828..50908,50939..51160)	Theileria annulata	3861843
TA15980	CDS	TA15980	NC_011099.1	51506	53120	R	all_bases.cand.525 - hypothetical protein; uncharacterized protein	complement(join(51506..51670,51707..51897,51961..52086,52409..52530,52570..52667,52701..52808,52840..52959,53070..53120))	Theileria annulata	3861842
TA15975	CDS	TA15975	NC_011099.1	53604	55443	D	all_bases.C.cand.1317 - serine/threonine protein phosphatase; serine/threonine protein phosphatase, putative	join(53604..53880,53956..54072,54103..54210,54239..54310,54341..54414,54443..54514,54547..55268,55335..55443)	Theileria annulata	3861841
TA15970	CDS	TA15970	NC_011099.1	56158	58461	D	chr2.C.cand.8 - CPDc catalytic domain of ctd-like phosphatases; CTD-like phosphatase, putative	56158..58461	Theileria annulata	3861840
TA15965	CDS	TA15965	NC_011099.1	58880	60252	D	chr2.C.cand.9 - signal peptide, transmembrane domains; transmembrane protein, putative; 9 probable transmembrane helices predicted for TA15965 by TMHMM2.0 at aa 29-51, 66-85, 92-111, 121-143, 155-174, 189-211, 322-344, 349-371 and 408-430; uncharacterized protein	join(58880..59294,59324..60252)	Theileria annulata	3861839
TA15960	CDS	TA15960	NC_011099.1	60315	63154	R	all_bases.cand.524 - signal peptide, PF00248 Aldo/keto reductase family; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA15960 by SignalP 2.0 HMM (Signal peptide probability 0.705, signal anchor probability 0.003) with cleavage site probability 0.191 between residues 23 and 24; aldo-keto reductase family protein, putative	complement(join(60315..60455,60532..60652,60682..60805,60835..60940,60970..61035,61066..61140,61169..61328,61360..61529,61559..61724,61774..61861,61891..63154))	Theileria annulata	3861838
TA15955	CDS	TA15955	NC_011099.1	63465	68000	R	chr2.cand.520 -ABC transporter; 12 probable transmembrane helices predicted for TA15955 by TMHMM2.0 at aa 133-155, 168-190, 195-217, 279-301, 316-338, 390-412, 448-470, 824-846, 896-918, 962-984, 989-1006 and 1071-1093; (subtelomeric) ABC-transporter protein family member, putative	complement(63465..68000)	Theileria annulata	3861837
TA15950	CDS	TA15950	NC_011099.1	69133	70176	D	chr2.C.cand.10 - possible signal peptide; secreted protein, putative; uncharacterized protein	69133..70176	Theileria annulata	3861836
TA15945	CDS	TA15945	NC_011099.1	70258	84424	R	chr2.cand.519 - hypothetical protein; uncharacterized protein	complement(join(70258..72863,72975..79711,79778..80240,80274..80422,80504..82322,82390..84424))	Theileria annulata	3861835
TA15940	CDS	TA15940	NC_011099.1	84935	86667	R	chaperone, putative	complement(join(84935..85267,85354..86667))	Theileria annulata	3861834
TA15935	CDS	TA15935	NC_011099.1	87035	87910	D	chr2.C.cand.12 - hypothetical protein; uncharacterized protein	87035..87910	Theileria annulata	3861833
TA15930	CDS	TA15930	NC_011099.1	87995	90612	R	chr2.cand.517 - glucosamine--fructose-6-phosphate aminotransferase; glucosamine--fructose-6-phosphate aminotransferase, putative	complement(join(87995..88468,88535..89036,89084..90433,90530..90612))	Theileria annulata	3861871
TA15925	CDS	TA15925	NC_011099.1	91595	93464	D	chr2.C.cand.13 - calcium binding protein; calcium binding protein; uncharacterized protein	join(91595..93236,93334..93464)	Theileria annulata	3861870
TA15920	CDS	TA15920	NC_011099.1	93576	96138	R	all_bases.cand.519 - RNA binding protein; 1 probable transmembrane helix predicted for TA15920 by TMHMM2.0 at aa 52-74; RNA binding protein (nil per os homologue), putative	complement(join(93576..94030,94094..94430,94507..95797,95835..95864,95900..96081,96112..96138))	Theileria annulata	3861869
TA15915	CDS	TA15915	NC_011099.1	96297	96740	R	hypothetical protein, conserved; uncharacterized protein	complement(join(96297..96391,96431..96740))	Theileria annulata	3861868
TA15910	CDS	TA15910	NC_011099.1	97366	101701	D	chr2.C.cand.14 - hypothetical transmembrane protein, conserved; 4 probable transmembrane helices predicted for TA15910 by TMHMM2.0 at aa 1120-1142, 1162-1184, 1204-1226 and 1283-1305; Signal peptide predicted for TA15910 by SignalP 2.0 HMM (Signal peptide probability 0.644, signal anchor probability 0.000) with cleavage site probability 0.290 between residues 26 and 27; uncharacterized protein	join(97366..97474,97524..97721,97762..99684,99752..99875,99917..100376,100448..100688,100743..101701)	Theileria annulata	3861867
TA15905	CDS	TA15905	NC_011099.1	101731	103018	R	chr2.cand.514 - hypothetical protein; uncharacterized protein	complement(join(101731..102039,102070..102253,102286..102865,102928..103018))	Theileria annulata	3861866
TA15900	CDS	TA15900	NC_011099.1	103157	104250	R	proteasome subunit alpha type 1; proteasome subunit alpha type 1, putative	complement(join(103157..103262,103316..103455,103532..103662,103812..104022,104119..104250))	Theileria annulata	3861865
TA15895	CDS	TA15895	NC_011099.1	104652	106197	R	chr2.cand.511 - metallo-protease; 5 probable transmembrane helices predicted for TA15895 by TMHMM2.0 at aa 94-116, 126-148, 168-190, 205-224 and 358-380; metallo-protease, putative	complement(join(104652..105260,105329..105451,105488..105712,105811..106197))	Theileria annulata	3861864
TA15890	CDS	TA15890	NC_011099.1	106644	108180	R	chr2.cand.510 - metalloprotease; 6 probable transmembrane helices predicted for TA15890 by TMHMM2.0 at aa 10-32, 85-107, 172-194, 201-220, 305-324 and 337-359; metallo-protease, putative	complement(join(106644..106918,106975..107141,107189..107451,107503..107733,107800..108180))	Theileria annulata	3861863
TA15875	CDS	TA15875	NC_011099.1	108362	109448	R	chr2.cand.509 - proteasome subunit alpha type 1; proteasome subunit alpha type 1, putative	complement(join(108362..108467,108521..108660,108728..108858,109010..109220,109317..109448))	Theileria annulata	3861860
TA15870	CDS	TA15870	NC_011099.1	109869	111446	R	chr2.cand.508 - metallo-protease; 4 probable transmembrane helices predicted for TA15870 by TMHMM2.0 at aa 126-148, 168-190, 205-227 and 359-381; metallo-protease, putative	complement(join(109869..110504,110566..110688,110731..110961,111060..111446))	Theileria annulata	3861859
TA15865	CDS	TA15865	NC_011099.1	112475	114355	D	chr2.C.cand.15 - hypothetical protein, some sim. to phosphoacetylglucosamine mutase; phosphoacetylglucosamine mutase, putative	112475..114355	Theileria annulata	3861858
TA15860	CDS	TA15860	NC_011099.1	114556	116643	R	chr2.cand.507 - signal peptide, hypothetical protein; secreted protein, putative; uncharacterized protein	complement(join(114556..115066,115096..116543,116599..116643))	Theileria annulata	3861857
TA15855	CDS	TA15855	NC_011099.1	116989	117594	R	prenylated protein, putative; chr2.cand.506 - prenylated protein, putative; synaptobrevin-like protein, putative	complement(116989..117594)	Theileria annulata	3861856
TA15850	CDS	TA15850	NC_011099.1	117827	119983	R	chr2.cand.505 - PF01142 uncharacterized protein family UPF0024; uncharacterized protein family UPF0024; uncharacterized protein	complement(117827..119983)	Theileria annulata	3861855
TA15845	CDS	TA15845	NC_011099.1	120077	120742	R	chr2.cand.504 - possible signal peptide, conserved hypothetical protein; secreted protein, putative; uncharacterized protein	complement(120077..120742)	Theileria annulata	3861854
TA15840	CDS	TA15840	NC_011099.1	121262	122113	R	all_bases.cand.508 - PF01027 Uncharacterised protein family UPF0005; 7 probable transmembrane helices predicted for TA15840 by TMHMM2.0 at aa 36-53, 57-79, 91-109, 119-141, 148-170, 174-193 and 209-231; apoptosis inhibitor, Bax-1 homologue, putative	complement(join(121262..121430,121486..121699,121730..121829,121862..122113))	Theileria annulata	3861853
TA15835	CDS	TA15835	NC_011099.1	122239	127531	R	zinc finger protein, putative; chr2.cand.502 - zinc finger protein; uncharacterized protein	complement(join(122239..122302,122358..127531))	Theileria annulata	3862007
TA15830	CDS	TA15830	NC_011099.1	128000	128863	R	chr2.cand.501 - score = 18.43 PF01226 formate/nitrate transporter; 6 probable transmembrane helices predicted for TA15830 by TMHMM2.0 at aa 37-59, 69-91, 112-134, 164-186, 193-215 and 241-263; formate/nitrate transporter, putative	complement(128000..128863)	Theileria annulata	3862006
TA15825	CDS	TA15825	NC_011099.1	129635	131582	D	chr2.C.cand.17 - PF00004 ATPase family associated with various cellular activities (AAA); 26S protease subunit, putative	join(129635..129661,129705..131582)	Theileria annulata	3862005
TA15820	CDS	TA15820	NC_011099.1	131684	134767	R	chr2.cand.500 - hypothetical protein; uncharacterized protein	complement(join(131684..134631,134719..134767))	Theileria annulata	3862004
TA15815	CDS	TA15815	NC_011099.1	135161	135457	R	uncharacterized protein	complement(135161..135457)	Theileria annulata	3862003
TA15810	CDS	TA15810	NC_011099.1	135560	136195	R	hypothetical protein, PF00226 DnaJ domain; small overlap at the 5' end with gene TA15805; uncharacterized protein	complement(135560..136195)	Theileria annulata	3862002
TA15805	CDS	TA15805	NC_011099.1	136173	136709	R	small overlap at the 3' end with gene TA15810; uncharacterized protein	complement(136173..136709)	Theileria annulata	3862001
TA15800	CDS	TA15800	NC_011099.1	137294	138166	R	chr2.cand.498 - hypothetical protein; uncharacterized protein	complement(137294..138166)	Theileria annulata	3862000
TA15795	CDS	TA15795	NC_011099.1	138816	139678	D	all_bases.C.cand.1327 - signal peptide, transmembrane; transmembrane protein, putative; 4 probable transmembrane helices predicted for TA15795 by TMHMM2.0 at aa 13-35, 39-56, 63-82 and 102-121; uncharacterized protein	join(138816..139025,139055..139678)	Theileria annulata	3861999
TA15790	CDS	TA15790	NC_011099.1	140038	140601	D	chr2.C.cand.19 - ran binding protein, PF00641, Zn finger in Ran binding protein and others; ran binding protein, putative	join(140038..140078,140145..140209,140247..140301,140335..140407,140467..140601)	Theileria annulata	3861998
TA15785	CDS	TA15785	NC_011099.1	140677	142227	D	chr2.C.cand.19 - 5'-3' exonuclease; 5'-3' exonuclease, putative	join(140677..142126,142157..142227)	Theileria annulata	3861997
TA15780	CDS	TA15780	NC_011099.1	142268	143128	D	chr2.C.cand.19 - hypothetical protein; uncharacterized protein	142268..143128	Theileria annulata	3861996
TA15765	CDS	TA15765	NC_011099.1	144034	146370	D	chr2.C.cand.20 - hypothetical protein; uncharacterized protein	144034..146370	Theileria annulata	3861993
TA15760	CDS	TA15760	NC_011099.1	146670	149376	D	all_bases.C.cand.1330 - mono-oxygenase, PF01494 FAD binding domain, PF01360 Monooxygenase; 1 probable transmembrane helix predicted for TA15760 by TMHMM2.0 at aa 7-26; Signal anchor predicted for TA15760 by SignalP 2.0 HMM (Signal peptide probability 0.062, signal anchor probability 0.696) with cleavage site probability 0.025 between residues 35 and 36; mono-oxygenase, putative	join(146670..146838,146870..147007,147041..147630,147661..147822,147852..148050,148086..148195,148229..148393,148423..148552,148585..148598,148629..148719,148784..148865,148896..149376)	Theileria annulata	3861992
TA15755	CDS	TA15755	NC_011099.1	149412	150881	R	chr2.cand.496 - hypothetical protein; uncharacterized protein	complement(join(149412..150238,150296..150881))	Theileria annulata	3861991
TA15750	CDS	TA15750	NC_011099.1	152797	153927	D	actin; actin 1, putative	152797..153927	Theileria annulata	3861990
TA15745	CDS	TA15745	NC_011099.1	154044	155814	R	chr2.cand.495 - signal peptide, transmembrane; transmembrane protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA15745 by TMHMM2.0 at aa 7-26 and 528-547; Signal anchor predicted for TA15745 by SignalP 2.0 HMM (Signal peptide probability 0.023, signal anchor probability 0.937) with cleavage site probability 0.009 between residues 17 and 18; uncharacterized protein	complement(join(154044..154340,154406..155463,155496..155814))	Theileria annulata	3861989
TA15740	CDS	TA15740	NC_011099.1	156545	157796	D	chr2.C.cand.24 - PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase; cyclophilin, putative	join(156545..156643,156676..157213,157279..157796)	Theileria annulata	3861988
TA15735	CDS	TA15735	NC_011099.1	157857	158559	R	uncharacterized protein	complement(join(157857..158210,158254..158559))	Theileria annulata	3862125
TA15730	CDS	TA15730	NC_011099.1	158684	163117	R	uncharacterized protein	complement(158684..163117)	Theileria annulata	3862124
TA15725	CDS	TA15725	NC_011099.1	163826	166807	D	chr2.C.cand.25 - hypothetical protein; uncharacterized protein	163826..166807	Theileria annulata	3862123
TA15720	CDS	TA15720	NC_011099.1	167581	172189	D	chr2.C.cand.26 - membrane protein; membrane protein, putative; 13 probable transmembrane helices predicted for TA15720 by TMHMM2.0 at aa 13-30, 60-79, 86-108, 112-134, 147-169, 189-211, 236-258, 273-295, 563-585, 959-981, 1002-1019, 1029-1048 and 1069-1088; uncharacterized protein	join(167581..170692,170731..170841,170892..172189)	Theileria annulata	3862122
TA15710	CDS	TA15710	NC_011099.1	172265	173338	R	chr2.cand.492 - signal peptide; secreted protein, putative; uncharacterized protein	complement(172265..173338)	Theileria annulata	3862120
TA15705	CDS	TA15705	NC_011099.1	173922	174929	R	chr2.cand.491 - signal peptide; secreted protein, putative; Signal peptide predicted for TA15705 by SignalP 2.0 HMM (Signal peptide probability 0.600, signal anchor probability 0.030) with cleavage site probability 0.264 between residues 18 and 19; uncharacterized protein	complement(173922..174929)	Theileria annulata	3862119
TA15700	CDS	TA15700	NC_011099.1	175343	176524	R	chr2.cand.490 - AAA-ATPase, proteasome subunit; 26S proteasome ATPase subunit (Rpt6A homologue), putative	complement(175343..176524)	Theileria annulata	3862118
TA15695	CDS	TA15695	NC_011099.1	176980	177507	R	chr2.cand.489 - signal peptide; secreted ptotein; uncharacterized protein	complement(176980..177507)	Theileria annulata	3862117
TA15690	CDS	TA15690	NC_011099.1	177908	178915	R	chr2.cand.488 - signal peptide; secreted protein, putative; uncharacterized protein	complement(177908..178915)	Theileria annulata	3862116
TA15685	CDS	TA15685	NC_011099.1	179384	180154	R	chr2.cand.487 - signal peptide; secreted protein, putative; uncharacterized protein	complement(179384..180154)	Theileria annulata	3862115
TA15680	CDS	TA15680	NC_011099.1	180707	183569	D	chr2.C.cand.29 - hypothetical protein, PF00481 Protein phosphatase 2C domain; PF00481 Protein phosphatase 2C domain; uncharacterized protein	join(180707..180745,180859..180975,181025..181651,181872..182231,182277..182407,182440..183184,183242..183397,183498..183569)	Theileria annulata	3862114
TA15675	CDS	TA15675	NC_011099.1	183734	190177	D	uncharacterized protein	183734..190177	Theileria annulata	3862113
TA15670	CDS	TA15670	NC_011099.1	190224	190799	R	chr2.cand.485 - hypothetical protein; uncharacterized protein	complement(190224..190799)	Theileria annulata	3862112
TA15665	CDS	TA15665	NC_011099.1	190929	194347	D	chr2.C.cand.32 - PF00112 Papain family cysteine protease; Signal peptide predicted for TA15665 by SignalP 2.0 HMM (Signal peptide probability 0.663, signal anchor probability 0.260) with cleavage site probability 0.331 between residues 24 and 25; cathepsin-like cysteine protease, putative	join(190929..191024,191156..191424,191575..191630,191662..191715,191855..192953,192983..193038,193275..193414,193451..193614,193644..193780,193928..193990,194103..194347)	Theileria annulata	3862111
TA15655	CDS	TA15655	NC_011099.1	194524	195870	D	hypothetical protein, zinc finger, conserved; uncharacterized protein	join(194524..194799,194923..195034,195542..195870)	Theileria annulata	3862109
TA15650	CDS	TA15650	NC_011099.1	195940	196266	R	hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA15650 by TMHMM2.0 at aa 10-32, 39-58 and 62-84; Signal anchor predicted for TA15650 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.997) with cleavage site probability 0.000 between residues 37 and 38; uncharacterized protein	complement(195940..196266)	Theileria annulata	3862108
TA15645	CDS	TA15645	NC_011099.1	196478	196889	D	chr2.C.cand.35 - hypothetical protein; uncharacterized protein	join(196478..196625,196662..196704,196796..196889)	Theileria annulata	3862107
TA15640	CDS	TA15640	NC_011099.1	198517	199078	D	chr2.C.cand.36 - hypothetical protein, conserved; uncharacterized protein	join(198517..198607,198742..198857,199016..199078)	Theileria annulata	3862164
TA15635	CDS	TA15635	NC_011099.1	199420	201373	D	chr2.C.cand.37 - hypothetical protein; 2 probable transmembrane helices predicted for TA15635 by TMHMM2.0 at aa 91-109 and 239-261; uncharacterized protein	join(199420..199591,199622..199936,199980..200070,200193..200242,200319..201373)	Theileria annulata	3862163
TA15630	CDS	TA15630	NC_011099.1	201674	207469	D	hypothetical telomeric sfii fragment 8-like protein; chr2.C.cand.38 - htsf8; SfiI-subtelomeric fragment related protein family member, putative	201674..207469	Theileria annulata	3862162
TA15625	CDS	TA15625	NC_011099.1	207923	210118	R	chr2.cand.482 - hypothetical protein; uncharacterized protein	complement(207923..210118)	Theileria annulata	3862161
TA15620	CDS	TA15620	NC_011099.1	210361	211369	R	uncharacterized protein	complement(join(210361..211275,211337..211369))	Theileria annulata	3862160
TA15615	CDS	TA15615	NC_011099.1	211456	213541	R	chr2.cand.481 - hypothetical protein; uncharacterized protein	complement(join(211456..212096,212148..213098,213277..213327,213439..213541))	Theileria annulata	3862159
TA15610	CDS	TA15610	NC_011099.1	213707	214649	D	chr2.C.cand.39 - hypothetical protein; 2 probable transmembrane helices predicted for TA15610 by TMHMM2.0 at aa 40-62 and 72-91; uncharacterized protein	join(213707..213900,214036..214144,214266..214649)	Theileria annulata	3862158
TA15600	CDS	TA15600	NC_011099.1	215484	216041	R	hypothetical protein, conserved, pfl0490C; uncharacterized protein	complement(215484..216041)	Theileria annulata	3862156
TA15595	CDS	TA15595	NC_011099.1	216574	217206	R	chr2.cand.480 - hypothetical protein; uncharacterized protein	complement(216574..217206)	Theileria annulata	3862155
TA15590	CDS	TA15590	NC_011099.1	217303	222231	R	chr2.cand.479 - hypothetical protein; uncharacterized protein	complement(217303..222231)	Theileria annulata	3862154
TA15585	CDS	TA15585	NC_011099.1	222315	224524	R	NADPH dependent oxidoreductase, putative	complement(join(222315..223904,224297..224524))	Theileria annulata	3862153
TA15580	CDS	TA15580	NC_011099.1	224757	231186	R	2 probable transmembrane helices predicted for TA15580 by TMHMM2.0 at aa 292-314 and 409-431; uncharacterized protein	complement(join(224757..229977,230690..231186))	Theileria annulata	3862152
TA15573	CDS	TA15573	NC_011099.1	232617	233374	D	uncharacterized protein	join(232617..232823,233027..233374)	Theileria annulata	3862151
TA15570	CDS	TA15570	NC_011099.1	233994	234593	R	chr2.cand.475 - score = 16.68; Signal peptide predicted for TA15570 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.956 between residues 17 and 18; uncharacterized protein	complement(233994..234593)	Theileria annulata	3862150
TA15565	CDS	TA15565	NC_011099.1	235315	235959	R	chr2.cand.474 - score = 11.38; uncharacterized protein	complement(join(235315..235691,235743..235853,235887..235959))	Theileria annulata	3862149
TA15560	CDS	TA15560	NC_011099.1	236431	237183	R	chr2.cand.473 - score = 13.66; uncharacterized protein	complement(236431..237183)	Theileria annulata	3862148
TA15555	CDS	TA15555	NC_011099.1	237369	239051	R	chr2.cand.472 - score = 53.84; uncharacterized protein	complement(join(237369..238120,238292..239051))	Theileria annulata	3862147
TA15545	CDS	TA15545	NC_011099.1	240036	242399	R	PF00481 Protein phosphatase 2C, signal sequence; protein phosphatase 2c, putative	complement(join(240036..241210,241442..241909,242195..242399))	Theileria annulata	3862145
TA15540	CDS	TA15540	NC_011099.1	243145	244146	D	chr2.C.cand.41 - signal peptide, transmembrane; transmembrane protein, putative; 6 probable transmembrane helices predicted for TA15540 by TMHMM2.0 at aa 13-30, 43-65, 126-143, 153-175, 278-300 and 310-332; Signal anchor predicted for TA15540 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.989) with cleavage site probability 0.002 between residues 30 and 31; uncharacterized protein	243145..244146	Theileria annulata	3861630
TA15535	CDS	TA15535	NC_011099.1	244364	246031	D	chr2.C.cand.42 - hypothetical protein; uncharacterized protein	244364..246031	Theileria annulata	3861629
TA15530	CDS	TA15530	NC_011099.1	246417	247427	D	chr2.C.cand.43 - glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase, putative	246417..247427	Theileria annulata	3861628
TA15525	CDS	TA15525	NC_011099.1	248012	250699	D	chr2.C.cand.44 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative	248012..250699	Theileria annulata	3861627
TA15520	CDS	TA15520	NC_011099.1	251648	254353	D	chr2.C.cand.45 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative	251648..254353	Theileria annulata	3861626
TA15515	CDS	TA15515	NC_011099.1	254720	256392	R	protein phosphatase pp2a; serine/threonine protein phosphatase pp2a catalytic subunit, putative	complement(join(254720..254842,255050..255233,255472..255583,255646..255756,256041..256392))	Theileria annulata	3861625
TA15510	CDS	TA15510	NC_011099.1	256650	257168	D	chr2.C.cand.46 - hypothetical protein, conserved, pf11_0393; uncharacterized protein	256650..257168	Theileria annulata	3861624
TA15505	CDS	TA15505	NC_011099.1	257376	257729	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA15505 by TMHMM2.0 at aa 29-51 and 61-83; Signal anchor predicted for TA15505 by SignalP 2.0 HMM (Signal peptide probability 0.046, signal anchor probability 0.918) with cleavage site probability 0.013 between residues 46 and 47; uncharacterized protein	257376..257729	Theileria annulata	3861623
TA15500	CDS	TA15500	NC_011099.1	257935	261068	D	transmembrane; 2 probable transmembrane helices predicted for TA15500 by TMHMM2.0 at aa 53-75 and 931-953; Tpr-related protein family member, putative	join(257935..258190,258400..261068)	Theileria annulata	3861622
TA15490	CDS	TA15490	NC_011099.1	261580	261939	D	3 probable transmembrane helices predicted for TA15490 by TMHMM2.0 at aa 7-29, 33-51 and 72-94; GPI-Anchor Signal predicted for TA15490 by DGPI v2.04 with cleavage site probability 2.4940002 near 97; uncharacterized protein	261580..261939	Theileria annulata	3861620
TA15485	CDS	TA15485	NC_011099.1	261969	266774	R	chr2.cand.466 - hypothetical protein, transmembrane; 2 probable transmembrane helices predicted for TA15485 by TMHMM2.0 at aa 95-117 and 170-187; uncharacterized protein	complement(join(261969..265229,265392..266774))	Theileria annulata	3861619
TA15480	CDS	TA15480	NC_011099.1	266861	267535	R	signal peptide, transmembrane; 4 probable transmembrane helices predicted for TA15480 by TMHMM2.0 at aa 7-29, 44-66, 129-151 and 171-193; uncharacterized protein	complement(266861..267535)	Theileria annulata	3861618
TA15475	CDS	TA15475	NC_011099.1	267931	276578	R	all_bases.cand.478 -guanylyl cyclase; 20 probable transmembrane helices predicted for TA15475 by TMHMM2.0 at aa 122-144, 148-170, 351-373, 393-415, 1141-1163, 1173-1195, 1226-1248, 1263-1285, 1290-1312, 1327-1349, 1457-1479, 1489-1511, 1518-1537, 1552-1574, 1587-1609, 2125-2147, 2160-2182, 2197-2219, 2252-2274 and 2284-2301; guanylyl cyclase, putative	complement(join(267931..268266,268374..268468,268570..268906,268985..269219,269319..269608,269639..269778,269857..270693,270804..271484,271617..272210,272265..272759,272906..275692,275726..276578))	Theileria annulata	3861617
TA15470	CDS	TA15470	NC_011099.1	277362	278493	D	small overlap at the 3' end with gene TA15465; uncharacterized protein	join(277362..277559,277631..277825,277891..278319,278350..278493)	Theileria annulata	3861616
TA15465	CDS	TA15465	NC_011099.1	278483	279739	R	small overlap at the 3' end with gene TA15470; uncharacterized protein	complement(join(278483..278957,278996..279102,279139..279391,279425..279507,279629..279739))	Theileria annulata	3861615
TA15460	CDS	TA15460	NC_011099.1	279928	280860	D	all_bases.C.cand.1354 - hypothetical protein, signal peptide, transmembrane; 1 probable transmembrane helix predicted for TA15460 by TMHMM2.0 at aa 152-174; uncharacterized protein	join(279928..280031,280061..280100,280144..280251,280281..280325,280356..280439,280470..280524,280556..280860)	Theileria annulata	3861614
TA15455	CDS	TA15455	NC_011099.1	280944	283220	R	all_bases.cand.476 - hypothetical protein; uncharacterized protein	complement(join(280944..281366,281398..281469,281500..281647,281678..282034,282065..282137,282169..282505,282540..282904,282938..283220))	Theileria annulata	3861613
TA15450	CDS	TA15450	NC_011099.1	283517	285085	D	chr2.C.cand.52 - hypothetical protein, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA15450 by SignalP 2.0 HMM (Signal peptide probability 0.676, signal anchor probability 0.000) with cleavage site probability 0.375 between residues 21 and 22; GPI-Anchor Signal predicted for TA15450 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	283517..285085	Theileria annulata	3861612
TA15445	CDS	TA15445	NC_011099.1	288091	289464	R	chr2.cand.460 - transmembrane protein; 9 probable transmembrane helices predicted for TA15445 by TMHMM2.0 at aa 15-34, 92-111, 121-140, 147-169, 184-203, 233-255, 307-326, 347-369 and 379-401; Tpr-related protein family member, putative	complement(288091..289464)	Theileria annulata	3861586
TA15435	CDS	TA15435	NC_011099.1	289931	291127	R	chr2.cand.459 - hypothetical protein; uncharacterized protein	complement(289931..291127)	Theileria annulata	3861584
TA15430	CDS	TA15430	NC_011099.1	291715	292723	R	PF02252 Proteasome activator pa28 beta subunit; subunit of proteaseome activator complex, putative	complement(join(291715..291858,291891..291945,292015..292175,292281..292367,292407..292523,292562..292723))	Theileria annulata	3861583
TA15425	CDS	TA15425	NC_011099.1	292903	295181	R	1 probable transmembrane helix predicted for TA15425 by TMHMM2.0 at aa 5-27; CTP synthase, putative	complement(join(292903..293501,293680..293739,293772..294003,294107..294190,294233..294346,294431..294703,294815..294979,295011..295181))	Theileria annulata	3861582
TA15420	CDS	TA15420	NC_011099.1	295558	297097	R	chr2.cand.454 - DNA primase small subunit; chr2.cand.455 - score = 10.85; DNA primase small subunit, putative	complement(join(295558..295940,296003..296548,296643..296715,296768..296856,296907..296954,297043..297097))	Theileria annulata	3861581
TA15415	CDS	TA15415	NC_011099.1	297331	298186	R	chr2.cand.453 - hypothetical protein, low similarity to ss-binding protein; Signal peptide predicted for TA15415 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.427 between residues 18 and 19; uncharacterized protein	complement(join(297331..297482,297534..297592,297660..297748,297830..297892,297947..298186))	Theileria annulata	3861580
TA15410	CDS	TA15410	NC_011099.1	298611	299588	D	chr2.C.cand.53 - PF00025 ADP-ribosylation factor family; adp-ribosylation factor, putative	join(298611..298859,298918..299085,299159..299450,299485..299588)	Theileria annulata	3861579
TA15405	CDS	TA15405	NC_011099.1	300095	300398	D	1 probable transmembrane helix predicted for TA15405 by TMHMM2.0 at aa 58-80; uncharacterized protein	join(300095..300109,300168..300398)	Theileria annulata	3861578
TA15400	CDS	TA15400	NC_011099.1	300593	300955	D	1 probable transmembrane helix predicted for TA15405 by TMHMM2.0; uncharacterized protein	300593..300955	Theileria annulata	3861577
TA15395	CDS	TA15395	NC_011099.1	302062	304141	D	chr2.C.cand.54 - myb/SANT DNA binding motifs; DNA-binding protein, putative; 1 probable transmembrane helix predicted for TA15395 by TMHMM2.0 at aa 7-29; uncharacterized protein	join(302062..302120,302156..302198,302286..302929,302997..303312,303392..303958,304034..304141)	Theileria annulata	3861576
TA15390	CDS	TA15390	NC_011099.1	304303	305780	R	1 probable transmembrane helix predicted for TA15390 by TMHMM2.0 at aa 209-231; uncharacterized protein	complement(join(304303..304547,304675..304988,305059..305161,305191..305260,305586..305780))	Theileria annulata	3861575
TA15380	CDS	TA15380	NC_011099.1	305886	307019	D	chr2.C.cand.55 - PF01066 CDP-alcohol phosphatidyltransferase; 4 probable transmembrane helices predicted for TA15380 by TMHMM2.0 at aa 20-42, 91-113, 140-162 and 182-201; CDP-diacylglycerol-inositol 3-phosphatidyltransferase, putative	join(305886..305931,306034..306168,306282..306380,306428..306482,306516..306649,306796..306899,306930..307019)	Theileria annulata	3861573
TA15375	CDS	TA15375	NC_011099.1	307330	308887	D	chr2.C.cand.56 -snap protein; SNAP protein, putative	join(307330..307468,307682..307804,307884..308146,308241..308429,308548..308600,308690..308747,308813..308887)	Theileria annulata	3861572
TA15370	CDS	TA15370	NC_011099.1	308985	310520	D	chr2.C.cand.57 - WW, FF domains; uncharacterized protein	join(308985..309013,309090..309120,309234..309538,309670..310213,310368..310520)	Theileria annulata	3861571
TA15365	CDS	TA15365	NC_011099.1	311568	313380	D	chr2.C.cand.58 - Cytidylyltransferase; CTP:phosphorylcholine cytidylyltransferase, putative	join(311568..311900,312062..312153,312301..312445,312550..313380)	Theileria annulata	3861570
TA15360	CDS	TA15360	NC_011099.1	314180	315180	R	uncharacterized protein	complement(join(314180..314387,314561..314662,314738..314880,314977..315180))	Theileria annulata	3861569
TA15355	CDS	TA15355	NC_011099.1	315989	316210	R	chr2.cand.452 - score = 6.55; uncharacterized protein	complement(315989..316210)	Theileria annulata	3861568
TA15350	CDS	TA15350	NC_011099.1	316449	317029	R	chr2.cand.451 - score = 12.14; uncharacterized protein	complement(join(316449..316643,316824..316907,316940..317029))	Theileria annulata	3861567
TA15345	CDS	TA15345	NC_011099.1	317104	319317	R	chr2.cand.450 - score = 34.02; 1 probable transmembrane helix predicted for TA15345 by TMHMM2.0 at aa 512-534; uncharacterized protein	complement(join(317104..317318,317381..317919,318033..318220,318299..318493,318538..318650,318685..318766,318809..318959,319021..319250,319282..319317))	Theileria annulata	3861755
TA15340	CDS	TA15340	NC_011099.1	319965	320282	D	1 probable transmembrane helix predicted for TA15340 by TMHMM2.0 at aa 15-36; Signal anchor predicted for TA15340 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.721) with cleavage site probability 0.001 between residues 31 and 32; uncharacterized protein	319965..320282	Theileria annulata	3861754
TA15335	CDS	TA15335	NC_011099.1	320764	323366	D	all_bases.cand.1290 - ubiquitin carboxyl-terminal hydrolase, zinc finger; ubiquitin carboxyl-terminal hydrolase, putative	join(320764..321178,321285..321419,321451..321587,321636..321732,321854..321909,321939..322100,322215..322332,322362..322449,322490..322559,322691..322892,323024..323206,323293..323366)	Theileria annulata	3861753
TA15330	CDS	TA15330	NC_011099.1	323527	325083	D	chr2.C.cand.61 - rna binding protein; SR protein, putative; uncharacterized protein	join(323527..323625,323792..323939,324080..325083)	Theileria annulata	3861752
TA15325	CDS	TA15325	NC_011099.1	325167	327658	D	hypothetical protein; 1 probable transmembrane helix predicted for TA15325 by TMHMM2.0 at aa 785-807; uncharacterized protein	join(325167..325313,325340..327658)	Theileria annulata	3861751
TA15320	CDS	TA15320	NC_011099.1	327688	328919	D	uncharacterized protein	join(327688..327724,327736..328919)	Theileria annulata	3861750
TA15315	CDS	TA15315	NC_011099.1	329081	329518	R	2 probable transmembrane helices predicted for TA15315 by TMHMM2.0 at aa 50-72 and 93-115; Tpr-related protein family member, putative	complement(329081..329518)	Theileria annulata	3861749
TA15310	CDS	TA15310	NC_011099.1	329875	330693	D	chr2.C.cand.63 - score = 25.02; 1 probable transmembrane helix predicted for TA15310 by TMHMM2.0 at aa 249-271; Tpr-related protein family member, putative	329875..330693	Theileria annulata	3861748
TA15305	CDS	TA15305	NC_011099.1	331395	333110	D	chr2.C.cand.64 - signal peptide; Signal peptide predicted for TA15305 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.002) with cleavage site probability 0.635 between residues 22 and 23; SfiI-subtelomeric fragment related protein family member, putative	331395..333110	Theileria annulata	3861747
TA15300	CDS	TA15300	NC_011099.1	333694	336037	D	PF01535 PPR repeat; uncharacterized protein	join(333694..333787,333882..334181,334211..334366,334398..335149,335219..335634,335665..336037)	Theileria annulata	3861746
TA15295	CDS	TA15295	NC_011099.1	336327	337289	D	chr2.C.cand.67 - hypothetical protein; uncharacterized protein	336327..337289	Theileria annulata	3861745
TA15290	CDS	TA15290	NC_011099.1	337616	338284	D	chr2.C.cand.68 - hypothetical protein; uncharacterized protein	337616..338284	Theileria annulata	3861744
TA15285	CDS	TA15285	NC_011099.1	338434	339294	R	chr2.cand.448 - signal peptide; secreted protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA15285 by SignalP 2.0 HMM (Signal peptide probability 0.912, signal anchor probability 0.000) with cleavage site probability 0.880 between residues 15 and 16; uncharacterized protein	complement(338434..339294)	Theileria annulata	3861743
TA15270	CDS	TA15270	NC_011099.1	339368	339995	R	hypothetical protein, conserved, mal13p1.159; uncharacterized protein	complement(join(339368..339853,339885..339995))	Theileria annulata	3861740
TA15265	CDS	TA15265	NC_011099.1	341038	342780	D	chr2.C.cand.69 - signal peptide; secreted protein, putative; 1 probable transmembrane helix predicted for TA15265 by TMHMM2.0 at aa 12-29; Signal peptide predicted for TA15265 by SignalP 2.0 HMM (Signal peptide probability 0.952, signal anchor probability 0.047) with cleavage site probability 0.555 between residues 34 and 35; uncharacterized protein	341038..342780	Theileria annulata	3861739
TA15260	CDS	TA15260	NC_011099.1	343138	343658	D	chr2.C.cand.70 - hypothetical protein; uncharacterized protein	join(343138..343544,343595..343658)	Theileria annulata	3861738
TA15255	CDS	TA15255	NC_011099.1	343717	345370	R	chr2.cand.447 - farnesyltransferase beta subunit; farnesyltransferase beta subunit, putative	complement(join(343717..344590,344634..345370))	Theileria annulata	3861737
TA15250	CDS	TA15250	NC_011099.1	345563	347830	D	chr2.C.cand.71 - hypothetical protein, PF03133 Tubulin-tyrosine ligase family; uncharacterized protein	345563..347830	Theileria annulata	3861669
TA15245	CDS	TA15245	NC_011099.1	348115	350490	D	chr2.C.cand.72 - hypothetical protein; uncharacterized protein	348115..350490	Theileria annulata	3861668
TA15240	CDS	TA15240	NC_011099.1	350866	351582	R	uncharacterized protein	complement(join(350866..351259,351296..351350,351386..351521,351553..351582))	Theileria annulata	3861667
TA15235	CDS	TA15235	NC_011099.1	351786	352166	R	chr2.cand.445 - score = 6.38; 1 probable transmembrane helix predicted for TA15235 by TMHMM2.0 at aa 10-32; uncharacterized protein	complement(351786..352166)	Theileria annulata	3861666
TA15230	CDS	TA15230	NC_011099.1	352573	354622	R	RNA binding protein; nucleolar, RNA-binding protein, putative	complement(join(352573..353360,353597..354481,354613..354622))	Theileria annulata	3861665
TA15225	CDS	TA15225	NC_011099.1	356010	356636	R	chr2.cand.442 - hypothetical protein, conserved, pfe1175W; uncharacterized protein	complement(356010..356636)	Theileria annulata	3861664
TA15215	CDS	TA15215	NC_011099.1	356966	357597	R	chr2.cand.441 - ATP synthase subunit C, signal peptide, mitochondrial; 2 probable transmembrane helices predicted for TA15215 by TMHMM2.0 at aa 93-115 and 135-157; GPI-Anchor Signal predicted for TA15215 by DGPI v2.04, no cleavage site predicted; ATP synthase subunit C, mitochondrial, putative	complement(join(356966..357235,357376..357597))	Theileria annulata	3861662
TA15210	CDS	TA15210	NC_011099.1	358212	358778	D	chr2.C.cand.74 - 60S ribosomal subunit protein l18b; 60S ribosomal subunit protein L18, putative	358212..358778	Theileria annulata	3861661
TA15205	CDS	TA15205	NC_011099.1	359799	364879	R	htsf20p3-like; SfiI-subtelomeric fragment related protein family member, putative	complement(join(359799..364795,364870..364879))	Theileria annulata	3861660
TA15200	CDS	TA15200	NC_011099.1	365404	366290	D	60S ribosomal subunit protein L18, putative	join(365404..365406,365478..365829,365977..366290)	Theileria annulata	3861659
TA15195	CDS	TA15195	NC_011099.1	366344	367394	R	chr2.cand.439 - hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA15195 by TMHMM2.0 at aa 217-239; Signal peptide predicted for TA15195 by SignalP 2.0 HMM (Signal peptide probability 0.910, signal anchor probability 0.000) with cleavage site probability 0.477 between residues 15 and 16; uncharacterized protein	complement(join(366344..366577,366664..366858,367017..367394))	Theileria annulata	3861658
TA15190	CDS	TA15190	NC_011099.1	367439	368819	R	chr2.cand.438 - rab; small GTP-binding protein, Rab family, putative	complement(join(367439..367545,367614..367731,367955..367994,368028..368088,368172..368495,368801..368819))	Theileria annulata	3861657
TA15185	CDS	TA15185	NC_011099.1	368956	370282	R	chr2.cand.437 - hypothetical protein, conserved,mal6p1.300, PF01171 PP-loop family UPF0021; uncharacterized protein	complement(join(368956..369131,369247..369932,369969..370282))	Theileria annulata	3861656
TA15180	CDS	TA15180	NC_011099.1	371425	382566	R	chr2.cand.436 - hypothetical protein; uncharacterized protein	complement(371425..382566)	Theileria annulata	3861655
TA15175	CDS	TA15175	NC_011099.1	382940	384091	R	zinc finger protein; uncharacterized protein	complement(382940..384091)	Theileria annulata	3861654
TA15170	CDS	TA15170	NC_011099.1	384335	384583	R	zinc finger protein; uncharacterized protein	complement(384335..384583)	Theileria annulata	3861653
TA15165	CDS	TA15165	NC_011099.1	385943	388437	R	chr2.cand.434 - score = 22.10; uncharacterized protein	complement(join(385943..386463,386704..387140,387269..387444,387638..387690,387787..388306,388375..388437))	Theileria annulata	3861652
TA15160	CDS	TA15160	NC_011099.1	388644	389735	D	chr2.C.cand.79 - score = 13.12; uncharacterized protein	388644..389735	Theileria annulata	3861651
TA15155	CDS	TA15155	NC_011099.1	390118	391194	D	chr2.C.cand.80 - score = 27.35; uncharacterized protein	390118..391194	Theileria annulata	3861650
TA15150	CDS	TA15150	NC_011099.1	391394	391615	D	chr2.C.cand.81 - score = 6.80; 2 probable transmembrane helices predicted for TA15150 by TMHMM2.0 at aa 21-43 and 48-70; Signal anchor predicted for TA15150 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.829) with cleavage site probability 0.000 between residues 16 and 17; uncharacterized protein	391394..391615	Theileria annulata	3862203
TA15145	CDS	TA15145	NC_011099.1	392090	393576	R	chr2.cand.433 - transmembrane; membrane protein, putative; 5 probable transmembrane helices predicted for TA15145 by TMHMM2.0 at aa 133-155, 243-265, 280-302, 309-331 and 367-389; uncharacterized protein	complement(join(392090..392823,392898..393576))	Theileria annulata	3862202
TA15140	CDS	TA15140	NC_011099.1	394105	394857	D	chr2.C.cand.82 - score = 15.65; uncharacterized protein	394105..394857	Theileria annulata	3862201
TA15135	CDS	TA15135	NC_011099.1	394893	395832	D	chr2.C.cand.83 - score = 21.23; uncharacterized protein	join(394893..395121,395169..395248,395281..395362,395529..395664,395724..395832)	Theileria annulata	3862200
TA15130	CDS	TA15130	NC_011099.1	395899	396480	R	chr2.cand.432 - score = 7.52; uncharacterized protein	complement(join(395899..396051,396214..396480))	Theileria annulata	3862199
TA15125	CDS	TA15125	NC_011099.1	396787	404127	R	hypothetical protein, PI3Kc Phosphoinositide 3-kinase, catalytic domain; 5 probable transmembrane helices predicted for TA15125 by TMHMM2.0 at aa 198-220, 506-528, 678-700, 768-790 and 957-979; uncharacterized protein	complement(396787..404127)	Theileria annulata	3862198
TA15120	CDS	TA15120	NC_011099.1	404320	405546	D	all_bases.cand.1308 - similar to chromosome assembly protein; chromatin assembly protein, putative	join(404320..404709,404818..405546)	Theileria annulata	3862197
TA15110	CDS	TA15110	NC_011099.1	405559	407643	R	uncharacterized protein	complement(405559..407643)	Theileria annulata	3862195
TA15105	CDS	TA15105	NC_011099.1	407852	408732	R	chr2.cand.429 - score = 10.05 PF01265 cytochrome c/c1 heme lyase; cytochrome C-type heme lyase, putative	complement(join(407852..408056,408170..408256,408287..408467,408543..408732))	Theileria annulata	3862194
TA15100	CDS	TA15100	NC_011099.1	408933	409517	D	chr2.C.cand.85 - score = 18.79; uncharacterized protein	408933..409517	Theileria annulata	3862193
TA15095	CDS	TA15095	NC_011099.1	409569	410723	R	chr2.cand.428 - score = 39.12; Tpr-related protein family member, putative	complement(409569..410723)	Theileria annulata	3862192
TA15090	CDS	TA15090	NC_011099.1	411068	412205	D	Tpr-related protein family member, putative	join(411068..411081,411128..412205)	Theileria annulata	3862191
TA15085	CDS	TA15085	NC_011099.1	412326	415081	R	chr2.cand.427 - score = 63.23; 2 probable transmembrane helices predicted for TA15085 by TMHMM2.0 at aa 785-807 and 843-862; Tpr-related protein family member, putative	complement(join(412326..414151,414283..415081))	Theileria annulata	3862190
TA15080	CDS	TA15080	NC_011099.1	415099	415757	R	1 probable transmembrane helix predicted for TA15080 by TMHMM2.0 at aa 148-167; Tpr-related protein family member, putative	complement(join(415099..415581,415734..415757))	Theileria annulata	3862189
TA15075	CDS	TA15075	NC_011099.1	415799	417052	R	chr2.cand.426 - phosphatidylinositol/phosphatidylcholine transfer protein; phosphatidylinositol/phosphatidylcholine transfer protein, putative	complement(join(415799..415926,415975..416316,416365..416545,416641..416740,416776..416909,416999..417052))	Theileria annulata	3862188
TA15070	CDS	TA15070	NC_011099.1	417503	417748	D	very hypothetical protein, but gene in this region somewhere; uncharacterized protein	417503..417748	Theileria annulata	3862187
TA15065	CDS	TA15065	NC_011099.1	417880	418794	R	chr2.cand.425 - ribosomal protein s2; ribosomal protein S2, putative	complement(join(417880..418634,418788..418794))	Theileria annulata	3862186
TA15055	CDS	TA15055	NC_011099.1	419226	421054	D	chr2.C.cand.87 - signal peptide; secreted protein, putative; Signal peptide predicted for TA15055 by SignalP 2.0 HMM (Signal peptide probability 0.902, signal anchor probability 0.000) with cleavage site probability 0.732 between residues 17 and 18; uncharacterized protein	join(419226..419435,419548..419762,419828..420237,420288..421054)	Theileria annulata	3862223
TA15050	CDS	TA15050	NC_011099.1	421117	422664	R	chr2.cand.424 - hypothetical protein; Tpr-related protein family member, putative	complement(421117..422664)	Theileria annulata	3862222
TA15045	CDS	TA15045	NC_011099.1	422852	423381	R	chr2.cand.423 - hypothetical protein; uncharacterized protein	complement(join(422852..423022,423088..423194,423357..423381))	Theileria annulata	3862221
TA15040	CDS	TA15040	NC_011099.1	423731	424639	D	PF01529 DHHC zinc finger domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal anchor predicted for TA15040 by SignalP 2.0 HMM (Signal peptide probabilty 0.003, signal anchor probability 0.601) with cleavage site probability 0.001 between residues 26 and 27; 2 probable transmembrane helices predicted for TA15040 by TMHMM2.0 at aa 78-100 and 120-142; uncharacterized protein	join(423731..423794,423871..423993,424066..424127,424159..424281,424311..424486,424534..424639)	Theileria annulata	3862220
TA15035	CDS	TA15035	NC_011099.1	424709	431673	D	chr2.C.cand.88 - hypothetical protein; uncharacterized protein	join(424709..429625,429700..429813,429910..430036,430106..430601,430652..431258,431336..431411,431456..431673)	Theileria annulata	3862219
TA15030	CDS	TA15030	NC_011099.1	431751	432414	D	chr2.C.cand.88 - mitochondrial/apicoplast ribosomal protein l7/l12; ribosomal protein l7/l12, mitochondrial/apicoplast, putative	join(431751..431897,431930..432068,432098..432414)	Theileria annulata	3862218
TA15025	CDS	TA15025	NC_011099.1	432645	433166	D	chr2.C.cand.89 - hypothetical protein; uncharacterized protein	432645..433166	Theileria annulata	3862217
TA15020	CDS	TA15020	NC_011099.1	433250	435954	D	chr2.C.cand.90 - hypothetical protein; uncharacterized protein	join(433250..433740,433777..434682,434852..434889,435020..435954)	Theileria annulata	3862216
TA15015	CDS	TA15015	NC_011099.1	436106	438702	R	small overlap at the 5' end with gene TA15010; Tpr-related protein family member, putative	complement(join(436106..437542,437602..437763,437836..438702))	Theileria annulata	3862215
TA15010	CDS	TA15010	NC_011099.1	438679	440750	D	small overlap at the 5' end with gene TA15015; uncharacterized protein	join(438679..438687,438736..439512,439565..439992,440030..440750)	Theileria annulata	3862214
TA14995	CDS	TA14995	NC_011099.1	440812	441330	D	uncharacterized protein	440812..441330	Theileria annulata	3862211
TA14990	CDS	TA14990	NC_011099.1	441402	445534	R	chr2.cand.419 - hypothetical membrane protein, similarity to ATPases; 9 probable transmembrane helices predicted for TA14990 by TMHMM2.0 at aa 69-91, 101-123, 420-442, 446-468, 1082-1104, 1109-1131, 1161-1183, 1213-1235 and 1248-1267; cation transporting ATPase, putative	complement(join(441402..442600,442698..445108,445220..445292,445360..445534))	Theileria annulata	3862210
TA14985	CDS	TA14985	NC_011099.1	446213	450149	D	chr2.C.cand.95 - PF00521 DNA gyrase/topoisomerase IV, subunit A; Signal peptide predicted for TA14985 by SignalP 2.0 HMM (Signal peptide probability 0.722, signal anchor probability 0.000) with cleavage site probability 0.263 between residues 22 and 23; topoisomerase IV subunit A, putative	join(446213..446644,446794..447023,447129..447198,447267..447631,447794..447836,447914..448316,448404..449156,449332..449508,449641..450149)	Theileria annulata	3862209
TA14980	CDS	TA14980	NC_011099.1	450305	451765	R	chr2.cand.418 - transmembrane; membrane protein, putative; 2 probable transmembrane helices predicted for TA14980 by TMHMM2.0 at aa 283-305 and 379-401; uncharacterized protein	complement(join(450305..450631,450794..451765))	Theileria annulata	3862208
TA14975	CDS	TA14975	NC_011099.1	451978	453730	D	chr2.C.cand.96 - PF01399 PCI domain; 26S proteasome non-ATPase regulatory subunit 12, putative	join(451978..452100,452229..452642,452757..453086,453151..453477,453587..453730)	Theileria annulata	3862207
TA14970	CDS	TA14970	NC_011099.1	454242	454903	D	chr2.C.cand.98 - translation initiation factor eif-1a; translation initiation factor eif-1A, putative	join(454242..454257,454292..454375,454469..454553,454621..454903)	Theileria annulata	3862206
TA14965	CDS	TA14965	NC_011099.1	455241	456733	R	chr2.cand.417 - PF01000 RNA polymerase Rpb3/RpoA insert domain; DNA-directed RNA polymerases I and III, 40 kDa polypeptide, putative	complement(join(455241..455455,455557..455667,455717..455816,455960..456078,456158..456371,456503..456733))	Theileria annulata	3862205
TA14960	CDS	TA14960	NC_011099.1	458320	459934	D	chr2.C.cand.99 - hypothetical protein; uncharacterized protein	join(458320..458540,458658..458891,458918..459028,459157..459226,459388..459561,459686..459934)	Theileria annulata	3862204
TA14955	CDS	TA14955	NC_011099.1	460695	478121	D	chr2.C.cand.101 - hypothetical protein, signal peptide; hypothetical protein, signal peptide; Signal peptide predicted for TA14955 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.980 between residues 19 and 20; uncharacterized protein	460695..478121	Theileria annulata	3862242
TA14950	CDS	TA14950	NC_011099.1	478628	480322	D	chr2.C.cand.102 - transmembrane; membrane protein, putative; 10 probable transmembrane helices predicted for TA14950 by TMHMM2.0 at aa 21-38, 73-90, 97-119, 129-148, 155-177, 192-214, 334-353, 368-390, 403-425 and 468-490; uncharacterized protein	join(478628..479963,480000..480322)	Theileria annulata	3862241
TA14945	CDS	TA14945	NC_011099.1	480869	482779	D	chr2.C.cand.103 - signal peptide; secreted protein, putative; Signal peptide predicted for TA14945 by SignalP 2.0 HMM (Signal peptide probability 0.941, signal anchor probability 0.004) with cleavage site probability 0.495 between residues 20 and 21; uncharacterized protein	480869..482779	Theileria annulata	3862240
TA14940	CDS	TA14940	NC_011099.1	483065	484356	D	all_bases.cand.1326 - hypothetical protein; uncharacterized protein	join(483065..483145,483215..483355,483473..483607,483680..483775,483827..483915,483945..484092,484123..484356)	Theileria annulata	3862239
TA14935	CDS	TA14935	NC_011099.1	484707	485045	D	chr2.C.cand.106 - mitochondrial ribosomal protein s14 precursor, putative; mitochondrial ribosomal protein S14 precursor, putative	484707..485045	Theileria annulata	3862238
TA14930	CDS	TA14930	NC_011099.1	485111	486228	R	chr2.cand.415 - hypothetical protein; uncharacterized protein	complement(join(485111..485289,485344..485411,485483..486228))	Theileria annulata	3862237
TA14925	CDS	TA14925	NC_011099.1	486279	486846	R	chr2.cand.414 - hypothetical protein; uncharacterized protein	complement(join(486279..486348,486411..486486,486555..486582,486616..486846))	Theileria annulata	3862236
TA14920	CDS	TA14920	NC_011099.1	487582	489627	D	chr2.C.cand.107 - organellar heat shock protein, hsp70; heat shock protein HSP70 homologue, putative	487582..489627	Theileria annulata	3862235
TA14915	CDS	TA14915	NC_011099.1	489700	491271	R	chr2.cand.413 - hypothetical protein; uncharacterized protein	complement(489700..491271)	Theileria annulata	3862234
TA14910	CDS	TA14910	NC_011099.1	491316	491669	R	chr2.cand.412 - hypothetical protein; uncharacterized protein	complement(491316..491669)	Theileria annulata	3862233
TA14905	CDS	TA14905	NC_011099.1	492253	493814	D	chr2.C.cand.109 - eukaryotic peptide chain release factor; eukaryotic peptide chain release factor, putative	join(492253..492320,492398..492552,492585..492745,492776..492874,492910..493090,493120..493332,493405..493814)	Theileria annulata	3862232
TA14900	CDS	TA14900	NC_011099.1	493920	499052	R	all_bases.C.cand.493 - PF03178 CPSF A subunit region; CPSF (cleavage and polyadenylation specific factor), subunit A, putative	complement(join(493920..493964,493994..494069,494100..494281,494310..494387,494451..494637,494695..499052))	Theileria annulata	3862231
TA14885	CDS	TA14885	NC_011099.1	500033	501613	D	chr2.C.cand.110 - hypothetical protein; uncharacterized protein	500033..501613	Theileria annulata	3862228
TA14880	CDS	TA14880	NC_011099.1	501775	503985	R	chr2.cand.410 - PF00152 tRNA synthetases class II (D, K and N); asparaginyl-trna synthetase, putative	complement(join(501775..502013,502052..502252,502311..503985))	Theileria annulata	3862227
TA14875	CDS	TA14875	NC_011099.1	504299	505166	D	chr2.C.cand.111 - hypothetical protein; uncharacterized protein	join(504299..504383,504502..504541,504605..504683,504720..505166)	Theileria annulata	3862226
TA14870	CDS	TA14870	NC_011099.1	505174	506184	R	chr2.cand.409 - hypothetical protein; uncharacterized protein	complement(join(505174..505531,505570..505882,505938..506184))	Theileria annulata	3862225
TA14865	CDS	TA14865	NC_011099.1	506364	507941	R	ankyrin repeat protein, putative; chr2.cand.408 - PF00023 Ankyrin repeat; uncharacterized protein	complement(join(506364..506469,506499..506653,506732..507513,507545..507941))	Theileria annulata	3862224
TA14860	CDS	TA14860	NC_011099.1	508415	509641	D	chr2.C.cand.112 - score = 39.77hypothetical protein, conserved, pfe0995C; uncharacterized protein	join(508415..508501,508545..509058,509108..509215,509279..509458,509505..509641)	Theileria annulata	3862302
TA14855	CDS	TA14855	NC_011099.1	509790	510584	R	chr2.cand.407 - PF02338 OTU-like cysteine protease, not good gene model; OTU-like cysteine protease, putative; uncharacterized protein	complement(join(509790..510031,510082..510227,510304..510440,510561..510584))	Theileria annulata	3862301
TA14850	CDS	TA14850	NC_011099.1	510699	511760	D	PF00535 Glycosyl transferase; dolichol phosphate mannose synthase, putative	join(510699..510811,510843..511408,511467..511529,511561..511760)	Theileria annulata	3862300
TA14845	CDS	TA14845	NC_011099.1	512869	513597	D	chr2.C.cand.114 - hypothetical protein; uncharacterized protein	512869..513597	Theileria annulata	3862299
TA14840	CDS	TA14840	NC_011099.1	514435	516561	R	chr2.cand.406 - TpR-like protein; 2 probable transmembrane helices predicted for TA14840 by TMHMM2.0 at aa 21-43 and 591-613; Tpr-related protein family member, putative	complement(join(514435..514646,514759..515119,515242..515478,515506..516561))	Theileria annulata	3862298
TA14835	CDS	TA14835	NC_011099.1	516786	518138	R	chr2.cand.405 - hypothetical protein; uncharacterized protein	complement(516786..518138)	Theileria annulata	3862297
TA14830	CDS	TA14830	NC_011099.1	518552	522027	D	chr2.C.cand.115 - G-beta protein; G-beta protein, transducin-like, putative	join(518552..518657,518708..519032,519104..519380,519454..520683,520761..521000,521105..521270,521341..521459,521510..521641,521719..521904,521938..522027)	Theileria annulata	3862296
TA14825	CDS	TA14825	NC_011099.1	522433	525145	D	chr2.C.cand.116 - ABC transporter; 5 probable transmembrane helices predicted for TA14825 by TMHMM2.0 at aa 54-76, 96-113, 173-195, 199-221 and 320-342; MDR-family, ABC transporter, putative	join(522433..522537,522598..522861,522921..523628,523661..524172,524254..524560,524690..524891,525012..525145)	Theileria annulata	3862295
TA14820	CDS	TA14820	NC_011099.1	525904	526777	D	all_bases.cand.1338 - PF01652 Eukaryotic initiation factor 4E; initiation factor 4E, putative	join(525904..526011,526058..526195,526228..526346,526378..526678,526730..526777)	Theileria annulata	3862294
TA14815	CDS	TA14815	NC_011099.1	526814	528175	D	chr2.C.cand.118 - WD40 G-beta protein; G-beta protein, putative; uncharacterized protein	join(526814..526917,526951..527054,527147..527231,527267..527339,527369..527435,527465..527507,527537..527633,527663..527779,527812..527896,527965..528048,528078..528175)	Theileria annulata	3862293
TA14810	CDS	TA14810	NC_011099.1	528205	529687	R	chr2.cand.404 - transmembrane; membrane protein, putative; 8 probable transmembrane helices predicted for TA14810 by TMHMM2.0 at aa 37-56, 66-88, 124-143, 153-172, 185-207, 238-260, 320-342 and 418-437; uncharacterized protein	complement(join(528205..529226,529288..529687))	Theileria annulata	3862292
TA14805	CDS	TA14805	NC_011099.1	530047	533037	R	chr2.cand.403 - hypothetical protein; uncharacterized protein	complement(join(530047..530343,530380..530497,530588..532621,532672..532888,532977..533037))	Theileria annulata	3862291
TA14800	CDS	TA14800	NC_011099.1	533239	533654	R	chr2.cand.402 -small nuclear ribonucleoprotein; small nuclear ribonucleoprotein, putative	complement(join(533239..533409,533473..533612,533645..533654))	Theileria annulata	3862290
TA14795	CDS	TA14795	NC_011099.1	534136	535747	D	chr2.C.cand.119 - ATP-dependent RNA helicase; ATP-dependent RNA helicase, putative	join(534136..534532,534570..534796,534830..534925,534958..535152,535188..535251,535291..535462,535494..535557,535595..535747)	Theileria annulata	3862289
TA14790	CDS	TA14790	NC_011099.1	535845	537260	R	chr2.cand.401 - camp-dependent protein kinase, beta-catalytic subunit; camp-dependent protein kinase, beta-catalytic subunit, putative	complement(535845..537260)	Theileria annulata	3862288
TA14780	CDS	TA14780	NC_011099.1	538635	539019	D	1 probable transmembrane helix predicted for TA14780 by TMHMM2.0 at aa 49-71; Signal anchor predicted for TA14780 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.986) with cleavage site probability 0.000 between residues 20 and 21; uncharacterized protein	join(538635..538651,538684..538746,538779..538855,538901..538932,538969..539019)	Theileria annulata	3862286
TA14775	CDS	TA14775	NC_011099.1	539373	541167	D	chr2.C.cand.122 - glycerol kinase, PF00370 FGGY family of carbohydrate kinases, N-terminal domain, PF02782 FGGY family of carbohydrate kinases, C-terminal domain; glycerol kinase, putative	join(539373..539503,539535..539716,539757..539867,539905..539969,540037..540376,540406..540494,540533..540610,540652..541167)	Theileria annulata	3862285
TA14770	CDS	TA14770	NC_011099.1	541241	544163	R	chr2.cand.400 - hypothetical protein, conserved, mal13p1.260; uncharacterized protein	complement(join(541241..542770,542837..542962,543025..543372,543426..543796,543836..544163))	Theileria annulata	3862284
TA14765	CDS	TA14765	NC_011099.1	545584	546201	D	chr2.C.cand.123 - signal peptide; hypothetical protein, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14765 by SignalP 2.0 HMM (Signal peptide probability 0.943, signal anchor probability 0.014) with cleavage site probability 0.920 between residues 23 and 24; uncharacterized protein	join(545584..546030,546091..546201)	Theileria annulata	3862283
TA14760	CDS	TA14760	NC_011099.1	546334	546819	D	all_bases.cand.1344 - hypothetical protein, conserved, mal6p1.224; uncharacterized protein	join(546334..546412,546470..546596,546627..546819)	Theileria annulata	3862352
TA14755	CDS	TA14755	NC_011099.1	546909	548762	R	chr2.cand.399 - hypothetical protein; uncharacterized protein	complement(546909..548762)	Theileria annulata	3862351
TA14750	CDS	TA14750	NC_011099.1	548893	549737	R	chr2.cand.398 - 60S ribosomal protein L17; 60S ribosomal protein L17, putative	complement(join(548893..549147,549429..549737))	Theileria annulata	3862350
TA14745	CDS	TA14745	NC_011099.1	550668	551840	D	hypothetical protein, conserved; chr2.C.cand.124 - hypothetical protein, low similarity with mal13p1.259, membrane; 5 probable transmembrane helices predicted for TA14745 by TMHMM2.0 at aa 46-68, 81-103, 123-145, 312-334 and 360-379; GPI-Anchor Signal predicted for TA14745 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	550668..551840	Theileria annulata	3862349
TA14740	CDS	TA14740	NC_011099.1	551973	552830	R	chr2.cand.397 - hypothetical protein; uncharacterized protein	complement(551973..552830)	Theileria annulata	3862348
TA14735	CDS	TA14735	NC_011099.1	553191	554087	R	all_bases.C.cand.479 - calmodulin; calmodulin, putative	complement(join(553191..553345,553454..553564,553704..553808,554009..554087))	Theileria annulata	3862347
TA14720	CDS	TA14720	NC_011099.1	555135	557118	D	chr2.C.cand.125 - PF02121 Phosphatidylinositol transfer protein, PF00169 PH domain; Phosphatidylinositol transfer protein, putative; uncharacterized protein	join(555135..555232,555372..555519,555589..557118)	Theileria annulata	3862344
TA14715	CDS	TA14715	NC_011099.1	557267	557775	R	all_bases.C.cand.478 - hypothetical protein; uncharacterized protein	complement(join(557267..557326,557356..557775))	Theileria annulata	3862343
TA14710	CDS	TA14710	NC_011099.1	557829	559579	R	all_bases.C.cand.477 - hypothetical protein; uncharacterized protein	complement(join(557829..558067,558097..558517,558583..559082,559131..559298,559393..559579))	Theileria annulata	3862342
TA14705	CDS	TA14705	NC_011099.1	560109	561023	D	all_bases.cand.1347 - signal peptide, low sim. to ribosome recycling factor; hypothetical protein, signal peptide; 2 probable transmembrane helices predicted for TA14705 by TMHMM2.0 at aa 4-23 and 30-52; uncharacterized protein	join(560109..560284,560318..560530,560560..560748,560779..560820,560850..560906,560936..561023)	Theileria annulata	3862341
TA14700	CDS	TA14700	NC_011099.1	561134	562014	R	uncharacterized protein	complement(join(561134..561306,561402..561559,561701..561851,561930..562014))	Theileria annulata	3862340
TA14695	CDS	TA14695	NC_011099.1	562213	564249	D	all_bases.cand.1348 - score = 61.69 PF01926 Gtpase of unknown function; nucleolar GTPase, putative	join(562213..562333,562368..562569,562599..562890,562936..563009,563039..563236,563265..563395,563451..563551,563581..563660,563693..563820,563885..563976,564016..564249)	Theileria annulata	3862339
TA14690	CDS	TA14690	NC_011099.1	564287	564764	D	all_bases.cand.1349 - acyl carrier protein, signal sequence, apicoplast, PF00550 Phosphopantetheine attachment site; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14690 by SignalP 2.0 HMM (Signal peptide probability 0.974, signal anchor probability 0.006) with cleavage site probability 0.912 between residues 24 and 25; acyl carrier protein, apicoplast, putative	join(564287..564347,564380..564558,564588..564764)	Theileria annulata	3862338
TA14685	CDS	TA14685	NC_011099.1	564796	566151	D	chr2.C.cand.131 - PF00022 actin; actin-related protein, putative	564796..566151	Theileria annulata	3862337
TA14680	CDS	TA14680	NC_011099.1	566479	576060	R	chr2.cand.392 - signal peptide, hypothetical protein; 1 probable transmembrane helix predicted for TA14680 by TMHMM2.0 at aa 5-27; uncharacterized protein	complement(566479..576060)	Theileria annulata	3862336
TA14675	CDS	TA14675	NC_011099.1	576682	577734	R	chr2.cand.391 - signal peptide; secreted protein, putative; Signal peptide predicted for TA14675 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.000) with cleavage site probability 0.876 between residues 18 and 19; uncharacterized protein	complement(576682..577734)	Theileria annulata	3862335
TA14665	CDS	TA14665	NC_011099.1	578923	590685	D	chr2.C.cand.133 - signal peptide, hypothetical protein; 1 probable transmembrane helix predicted for TA14665 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA14665 by SignalP 2.0 HMM (Signal peptide probability 0.833, signal anchor probability 0.167) with cleavage site probability 0.353 between residues 22 and 23; uncharacterized protein	578923..590685	Theileria annulata	3862392
TA14660	CDS	TA14660	NC_011099.1	590865	591431	R	chr2.cand.390 - hypothetical protein; uncharacterized protein	complement(join(590865..591122,591177..591431))	Theileria annulata	3862391
TA14655	CDS	TA14655	NC_011099.1	591735	593756	D	all_bases.cand.1352 - signal peptide, transmembrane domains; membrane protein, putative; 12 probable transmembrane helices predicted for TA14655 by TMHMM2.0 at aa 33-51, 82-101, 108-127, 131-148, 155-177, 202-224, 236-258, 278-300, 320-351, 384-403, 447-469 and 484-506; uncharacterized protein	join(591735..591882,591941..592250,592321..592492,592557..592710,592740..592954,593011..593132,593201..593260,593296..593392,593459..593578,593619..593756)	Theileria annulata	3862390
TA14650	CDS	TA14650	NC_011099.1	594494	596934	D	chr2.C.cand.135 - protein transport protein sec23; protein transport protein (SEC23 homologue), putative	join(594494..594949,595066..596934)	Theileria annulata	3862389
TA14645	CDS	TA14645	NC_011099.1	597170	599065	D	chr2.C.cand.136 - transmembrane domains; 10 probable transmembrane helices predicted for TA14645 by TMHMM2.0 at aa 22-44, 153-175, 185-207, 214-236, 256-278, 408-430, 445-467, 522-544, 564-586 and 593-612; Tpr-related protein family member, putative	597170..599065	Theileria annulata	3862388
TA14640	CDS	TA14640	NC_011099.1	599403	599832	D	chr2.C.cand.137 - small nuclear ribonucleoprotein; small nuclear ribonucleoprotein, putative	join(599403..599469,599651..599832)	Theileria annulata	3862387
TA14635	CDS	TA14635	NC_011099.1	600541	601710	D	3 probable transmembrane helices predicted for TA14635 by TMHMM2.0 at aa 62-84, 145-167 and 212-234; uncharacterized protein	join(600541..600661,600704..600870,600993..601252,601325..601545,601640..601710)	Theileria annulata	3862386
TA14630	CDS	TA14630	NC_011099.1	601792	602703	R	chr2.cand.389 - hypothetical protein; uncharacterized protein	complement(join(601792..601861,601969..602097,602197..602386,602466..602703))	Theileria annulata	3862385
TA14625	CDS	TA14625	NC_011099.1	602978	604696	D	chr2.C.cand.139 - protein kinase; calcium-dependent protein kinase, putative	602978..604696	Theileria annulata	3862384
TA14620	CDS	TA14620	NC_011099.1	605092	606945	D	chr2.C.cand.140 - hypothetical protein; uncharacterized protein	join(605092..606063,606096..606437,606592..606945)	Theileria annulata	3862383
TA14615	CDS	TA14615	NC_011099.1	606985	608023	R	chr2.cand.388 - hypothetical protein; uncharacterized protein	complement(join(606985..607264,607320..607497,607604..607687,607747..608023))	Theileria annulata	3862382
TA14610	CDS	TA14610	NC_011099.1	608318	610496	D	chr2.C.cand.141 - GTPase activator, PF00566 TBC domain; GTPase activator, putative	join(608318..608865,608937..609114,609181..609261,609331..609429,609496..609577,609643..609744,609817..610496)	Theileria annulata	3862381
TA14605	CDS	TA14605	NC_011099.1	611011	612465	R	chr2.cand.387 - hypothetical protein; 1 probable transmembrane helix predicted for TA14605 by TMHMM2.0 at aa 460-482; Tpr-related protein family member, putative	complement(611011..612465)	Theileria annulata	3862380
TA14600	CDS	TA14600	NC_011099.1	612683	613495	R	UMP-CMP kinase, putative	complement(join(612683..612873,612956..613183,613348..613495))	Theileria annulata	3862379
TA14595	CDS	TA14595	NC_011099.1	614263	614937	D	chr2.C.cand.142 - hypothetical protein; uncharacterized protein	614263..614937	Theileria annulata	3862378
TA14590	CDS	TA14590	NC_011099.1	615139	619091	D	chr2.C.cand.143 - ubiquitin-activating enzyme e1; ubiquitin-activating enzyme E1, putative	join(615139..615271,615369..615565,615728..615958,616033..616217,616340..616673,616730..616912,616984..617127,617195..617368,617494..617770,617806..618122,618208..618930,618966..619091)	Theileria annulata	3862377
TA14585	CDS	TA14585	NC_011099.1	619146	621772	D	Tax1-binding protein TRX-like protein, putative	join(619146..619430,619520..619612,619762..619839,619904..620084,620175..620274,620353..620805,620880..620955,620984..621100,621135..621230,621373..621446,621477..621557,621619..621772)	Theileria annulata	3862376
TA14580	CDS	TA14580	NC_011099.1	621945	622916	R	chr2.cand.384 - transmembrane protein; membrane protein. putative; 2 probable transmembrane helices predicted for TA14580 by TMHMM2.0 at aa 218-240 and 261-283; uncharacterized protein	complement(621945..622916)	Theileria annulata	3862375
TA14575	CDS	TA14575	NC_011099.1	623175	624563	D	chr2.C.cand.147 - PF01026 TatD related DNase; TatD-like deoxyribonuclease, putative	join(623175..623401,623465..623565,623594..623804,623875..624014,624079..624267,624298..624563)	Theileria annulata	3862374
TA14570	CDS	TA14570	NC_011099.1	624934	626879	D	all_bases.cand.1363 - kinesin-like protein, kinesin motor domain; kinesin-like protein, putative	join(624934..625070,625199..625576,625607..625815,625960..626879)	Theileria annulata	3862373
TA14560	CDS	TA14560	NC_011099.1	626930	628847	R	all_bases.C.cand.466 - hypothetical protein; uncharacterized protein	complement(join(626930..627215,627246..627461,627519..627957,628009..628474,628505..628603,628635..628847))	Theileria annulata	3862506
TA14555	CDS	TA14555	NC_011099.1	629187	630847	D	chr2.C.cand.149 - AAA-atpase; CDC6-like ATPase, putative	join(629187..629341,629417..629722,629789..630145,630212..630384,630427..630671,630707..630847)	Theileria annulata	3862505
TA14550	CDS	TA14550	NC_011099.1	631154	632078	R	uncharacterized protein	complement(join(631154..631330,631364..631445,631517..631617,631649..631714,631754..631838,631903..632078))	Theileria annulata	3862504
TA14545	CDS	TA14545	NC_011099.1	632176	633521	D	chr2.C.cand.151 - signal peptide; Signal peptide predicted for TA14545 by SignalP 2.0 HMM (Signal peptide probability 0.950, signal anchor probability 0.005) with cleavage site probability 0.636 between residues 18 and 19; 4-diphosphocytidyl-2c-methyl-D-erythritol kinase, putative	join(632176..632302,632338..632592,632685..632933,633001..633521)	Theileria annulata	3862503
TA14540	CDS	TA14540	NC_011099.1	633634	635874	R	membrane protein, putative; chr2.cand.380 - transmembrane domains; 10 probable transmembrane helices predicted for TA14540 by TMHMM2.0 at aa 32-54, 123-145, 155-177, 184-206, 221-243, 521-543, 553-575, 630-652, 672-694 and 701-723; Tpr-related protein family member, putative	complement(633634..635874)	Theileria annulata	3862502
TA14535	CDS	TA14535	NC_011099.1	636057	637699	R	chr2.cand.379 - signal peptide, apicoplast target sequence, PF00830 Ribosomal L28 family; 50s ribosomal subunit protein L28, putative	complement(join(636057..636748,636818..636882,636944..637171,637229..637362,637456..637514,637588..637699))	Theileria annulata	3862501
TA14530	CDS	TA14530	NC_011099.1	638385	638615	R	uncharacterized protein	complement(638385..638615)	Theileria annulata	3862500
TA14525	CDS	TA14525	NC_011099.1	638851	639882	R	chr2.cand.378 - PF01873 Domain found in IF2B/IF5; eukaryotic translation initiation factor 2, beta, putative	complement(join(638851..639026,639097..639239,639288..639430,639480..639553,639613..639678,639728..639818,639853..639882))	Theileria annulata	3862499
TA14520	CDS	TA14520	NC_011099.1	640053	641555	R	chr2.cand.378 - hypothetical protein, conserved, pfl2150C; uncharacterized protein	complement(join(640053..640487,640525..640601,640665..640734,640765..640883,640952..641071,641136..641275,641434..641555))	Theileria annulata	3862498
TA14515	CDS	TA14515	NC_011099.1	641841	643712	R	chr2.cand.376 - hypothetical protein, conserved, pf14_0413; uncharacterized protein	complement(641841..643712)	Theileria annulata	3862497
TA14500	CDS	TA14500	NC_011099.1	644074	647117	D	chr2.C.cand.152 - hypothetical protein; uncharacterized protein	join(644074..644583,644636..645525,645557..646552,646609..646893,646937..647117)	Theileria annulata	3862494
TA14495	CDS	TA14495	NC_011099.1	647253	648578	R	chr2.cand.375 - membrane protein; membrane protein; 10 probable transmembrane helices predicted for TA14495 by TMHMM2.0 at aa 5-23, 120-142, 149-171, 186-208, 253-275, 290-312, 315-337, 342-364, 376-398 and 408-427; uncharacterized protein	complement(647253..648578)	Theileria annulata	3862493
TA14490	CDS	TA14490	NC_011099.1	649000	650705	R	chr2.cand.374 - membrane protein; membrane protein; 10 probable transmembrane helices predicted for TA14490 by TMHMM2.0 at aa 28-50, 102-124, 174-193, 208-230, 358-377, 392-414, 416-438, 443-465, 477-499 and 509-531; Signal anchor predicted for TA14490 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.980) with cleavage site probability 0.001 between residues 47 and 48; uncharacterized protein	complement(join(649000..649688,649775..650705))	Theileria annulata	3862492
TA14485	CDS	TA14485	NC_011099.1	650957	652522	R	chr2.cand.373 - transmembrane protein; membrane protein, putative; 11 probable transmembrane helices predicted for TA14485 by TMHMM2.0 at aa 5-23, 90-112, 119-141, 151-170, 183-205, 332-354, 367-389, 393-415, 420-442, 452-474 and 487-506; uncharacterized protein	complement(650957..652522)	Theileria annulata	3862491
TA14480	CDS	TA14480	NC_011099.1	652954	655000	R	WD40 repeat protein; uncharacterized protein	complement(join(652954..653076,653107..653175,653335..654122,654187..654271,654301..654393,654505..654600,654648..654802,654904..655000))	Theileria annulata	3862490
TA14475	CDS	TA14475	NC_011099.1	655182	656680	D	chr2.C.cand.155 - WD40 protein; uncharacterized protein	join(655182..655410,655467..655877,655934..656204,656236..656680)	Theileria annulata	3862489
TA14470	CDS	TA14470	NC_011099.1	656767	658551	R	chr2.cand.371 - score = 36.55 vacuolar sorting domain; vacuolar-protein sorting-associated protein, putative	complement(join(656767..657402,657448..657703,657779..657867,657923..658016,658077..658167,658214..658444,658509..658551))	Theileria annulata	3862184
TA14465	CDS	TA14465	NC_011099.1	658855	659985	D	chr2.C.cand.156 - signal peptide, PF01553 Acyltransferase; 1 probable transmembrane helix predicted for TA14465 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA14465 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.998) with cleavage site probability 0.001 between residues 29 and 30; 1-acylglycerol-3-phosphate O-acyltransferase, putative	join(658855..659044,659127..659234,659278..659462,659495..659636,659718..659809,659875..659985)	Theileria annulata	3862183
TA14455	CDS	TA14455	NC_011099.1	660978	663973	R	chr2.cand.370 - signal peptide, apicoplast targetting sequence, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14455 by SignalP 2.0 HMM (Signal peptide probability 0.944, signal anchor probability 0.000) with cleavage site probability 0.702 between residues 16 and 17; 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase, putative	complement(join(660978..661091,661122..661256,661301..661375,661423..661548,661608..661793,661835..662293,662338..662744,662803..663035,663102..663307,663338..663487,663541..663701,663737..663827,663890..663973))	Theileria annulata	3862182
TA14450	CDS	TA14450	NC_011099.1	664036	666248	R	chr2.cand.369 - Citrate synthase, mitochondrial precursor; citrate synthase, mitochondrial precursor, putative	complement(join(664036..664262,664333..664710,664774..664864,664923..666248))	Theileria annulata	3862181
TA14445	CDS	TA14445	NC_011099.1	666626	667371	R	conserved hypothetical protein, DUF279; uncharacterized protein	complement(join(666626..666843,666927..667371))	Theileria annulata	3862180
TA14440	CDS	TA14440	NC_011099.1	667393	668191	R	chr2.cand.368 - PF02441 Flavoprotein; uncharacterized protein	complement(join(667393..667500,667564..667689,667743..667832,667899..668027,668075..668191))	Theileria annulata	3862179
TA14435	CDS	TA14435	NC_011099.1	668542	671974	D	chr2.C.cand.157 - serine/threonine protein kinase; serine/threonine protein kinase, putative	join(668542..669964,670023..671974)	Theileria annulata	3862178
TA14430	CDS	TA14430	NC_011099.1	672179	673344	D	all_bases.cand.1372 - mitotic checkpoint protein, WD40 protein; mitotic checkpoint protein, BUB3 homologue, putative	join(672179..672280,672311..672536,672608..672762,672797..672855,672885..673344)	Theileria annulata	3862177
TA14425	CDS	TA14425	NC_011099.1	673411	676638	R	all_bases.C.cand.452 - beta transducin, WD40 protein; transducin-like G-protein beta, putative	complement(join(673411..674028,674100..674243,674276..674479,674536..674891,674939..675416,675469..675910,675942..676093,676125..676390,676449..676638))	Theileria annulata	3862176
TA14420	CDS	TA14420	NC_011099.1	676821	678153	D	chr2.C.cand.160 - cleavage stimulation factor subunit 1, WD40 domains; cleavage stimulation factor subunit 1, putative	join(676821..676882,676925..677086,677117..677228,677263..677375,677407..677484,677526..677624,677676..677799,677833..677910,677944..678153)	Theileria annulata	3862175
TA14415	CDS	TA14415	NC_011099.1	678797	680007	R	chr2.cand.365 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative	complement(join(678797..678920,678983..680007))	Theileria annulata	3862174
TA14410	CDS	TA14410	NC_011099.1	680209	681422	R	chr2.cand.364 - PF01633 Choline/ethanolamine kinase; choline/ethanolamine kinase, putative	complement(join(680209..680332,680398..681422))	Theileria annulata	3862173
TA14405	CDS	TA14405	NC_011099.1	681624	682845	R	chr2.cand.363 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative	complement(join(681624..681747,681812..682845))	Theileria annulata	3862172
TA14390	CDS	TA14390	NC_011099.1	683403	684603	R	chr2.cand.362 -choline/ethanolamine kinase; choline/ethanolamine kinase, putative	complement(join(683403..683511,683576..684603))	Theileria annulata	3862169
TA14385	CDS	TA14385	NC_011099.1	684805	686018	R	chr2.cand.361 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative	complement(join(684805..684928,684991..686018))	Theileria annulata	3862168
TA14380	CDS	TA14380	NC_011099.1	686223	687456	R	chr2.cand.360 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative	complement(join(686223..686343,686408..687456))	Theileria annulata	3862167
TA14375	CDS	TA14375	NC_011099.1	687923	689122	R	chr2.cand.359 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative	complement(join(687923..688031,688101..689122))	Theileria annulata	3862166
TA14370	CDS	TA14370	NC_011099.1	689455	690334	R	chr2.cand.358 - transmembrane domains; membrane protein, putative; 2 probable transmembrane helices predicted for TA14370 by TMHMM2.0 at aa 55-74 and 155-177; uncharacterized protein	complement(join(689455..690029,690124..690334))	Theileria annulata	3862165
TA14365	CDS	TA14365	NC_011099.1	690424	691654	D	uncharacterized protein	join(690424..690498,690701..690739,690795..690974,691019..691128,691181..691269,691308..691654)	Theileria annulata	3861649
TA14360	CDS	TA14360	NC_011099.1	691850	693358	D	chr2.C.cand.162 - PF00561 alpha/beta hydrolase fold; hydrolase, putative	join(691850..692065,692165..692258,692289..693358)	Theileria annulata	3861648
TA14355	CDS	TA14355	NC_011099.1	693405	694091	D	uncharacterized protein	693405..694091	Theileria annulata	3861647
TA14350	CDS	TA14350	NC_011099.1	694144	697730	R	all_bases.C.cand.447 - hypothetical protein; uncharacterized protein	complement(join(694144..694297,694326..694439,694471..694613,694646..694716,694771..694951,694983..696632,696664..696731,696763..696841,696881..696939,696980..697085,697115..697263,697314..697447,697490..697621,697657..697730))	Theileria annulata	3861646
TA14345	CDS	TA14345	NC_011099.1	698100	698842	R	DnaJ domain protein; chr2.cand.355 - PF00226 DnaJ domain; uncharacterized protein	complement(join(698100..698335,698369..698619,698676..698842))	Theileria annulata	3861645
TA14340	CDS	TA14340	NC_011099.1	698985	700137	R	chr2.cand.354 - hypothetical protein; 1 probable transmembrane helix predicted for TA14340 by TMHMM2.0 at aa 272-294; uncharacterized protein	complement(join(698985..699222,699254..699318,699367..700137))	Theileria annulata	3861644
TA14335	CDS	TA14335	NC_011099.1	700391	701285	R	all_bases.C.cand.445 - hypothetical protein; uncharacterized protein	complement(join(700391..700641,700671..700748,700810..701085,701117..701222,701253..701285))	Theileria annulata	3861643
TA14330	CDS	TA14330	NC_011099.1	701439	702655	R	chr2.cand.352 - hypothetical protein, conserved, mal13p1.237; uncharacterized protein	complement(join(701439..701540,701611..701862,701912..702655))	Theileria annulata	3861642
TA14325	CDS	TA14325	NC_011099.1	703080	704138	R	chr2.cand.351 - hypothetical protein; 1 probable transmembrane helix predicted for TA14325 by TMHMM2.0 at aa 47-66; Signal anchor predicted for TA14325 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.983) with cleavage site probability 0.000 between residues -1 and 0; uncharacterized protein	complement(join(703080..703868,703899..704138))	Theileria annulata	3861641
TA14320	CDS	TA14320	NC_011099.1	704682	706272	D	chr2.C.cand.165 - PF00928 Adaptor complexes medium subunit family; clathrin-coat assembly protein, putative	join(704682..704763,704798..704979,705021..705179,705212..705943,706009..706065,706099..706272)	Theileria annulata	3861640
TA14315	CDS	TA14315	NC_011099.1	706339	706727	R	uncharacterized protein	complement(join(706339..706646,706676..706727))	Theileria annulata	3861639
TA14310	CDS	TA14310	NC_011099.1	706874	707380	R	hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14310 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.860 between residues 22 and 23; GPI-Anchor Signal predicted for TA14310 by DGPI v2.04 with cleavage site probability 0.15480001 near 137; uncharacterized protein	complement(706874..707380)	Theileria annulata	3861638
TA14305	CDS	TA14305	NC_011099.1	707504	708100	R	chr2.cand.350 - ubiquitin-conjugating enzyme e2; ubiquitin-conjugating enzyme E2, putative	complement(join(707504..707703,707745..707937,707969..708100))	Theileria annulata	3861637
TA14300	CDS	TA14300	NC_011099.1	708116	709784	R	chr2.cand.350 - gdp-mannose pyrophosphorylase; GDP-mannose pyrophosphorylase, putative	complement(join(708116..708250,708310..708380,708447..708558,708614..708818,708868..708994,709028..709142,709181..709329,709399..709447,709525..709602,709656..709784))	Theileria annulata	3861636
TA14295	CDS	TA14295	NC_011099.1	709937	711887	D	chr2.C.cand.166 - DnaJ domain; DnaJ domain protein, putative; 1 probable transmembrane helix predicted for TA14295 by TMHMM2.0 at aa 33-55; Signal anchor predicted for TA14295 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.995) with cleavage site probability 0.003 between residues 56 and 57; uncharacterized protein	join(709937..709953,709989..710019,710050..710152,710198..710348,710379..710455,710517..710836,710902..711312,711369..711887)	Theileria annulata	3861635
TA14285	CDS	TA14285	NC_011099.1	712273	714393	R	chr2.cand.349 - signal peptide, hypothetical protein; secreted protein, putative; SfiI-subtelomeric fragment related protein family member, putative	complement(712273..714393)	Theileria annulata	3861633
TA14280	CDS	TA14280	NC_011099.1	715479	716354	R	chr2.cand.348 - splicing factor 3a subunit 2, putative; splicing factor 3a subunit 2, putative	complement(join(715479..715562,715594..715694,715724..715955,716046..716354))	Theileria annulata	3861632
TA14275	CDS	TA14275	NC_011099.1	716429	719681	R	chr2.cand.346 - sodium/hydrogen exchanger; 11 probable transmembrane helices predicted for TA14275 by TMHMM2.0 at aa 2-24, 39-61, 68-86, 137-159, 171-193, 245-267, 293-315, 330-352, 365-382, 402-421 and 434-456; Signal peptide predicted for TA14275 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.002) with cleavage site probability 0.689 between residues 26 and 27; sodium/hydrogen exchanger, putative	complement(join(716429..716747,716797..717119,717171..717290,717322..717566,717604..718024,718104..718253,718313..718431,718463..718921,718978..719158,719241..719681))	Theileria annulata	3861631
TA14270	CDS	TA14270	NC_011099.1	720025	720737	D	chr2.C.cand.167 - signal peptide, 50s ribosomal protein l22, no predicted apicoplast target sequence; Signal peptide predicted for TA14270 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.872 between residues 15 and 16; 50S ribosomal protein L22, putative	join(720025..720165,720213..720737)	Theileria annulata	3862106
TA14265	CDS	TA14265	NC_011099.1	720916	721897	R	chr2.cand.345 - hypothetical protein; GPI-Anchor Signal predicted for TA14265 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(720916..721031,721063..721139,721169..721386,721492..721579,721692..721735,721775..721897))	Theileria annulata	3862105
TA14260	CDS	TA14260	NC_011099.1	722242	723565	R	all_bases.C.cand.439 - mis3 homologue, ribosomal RNA assembly protein; ribosomal RNA assembly protein, putative	complement(join(722242..722523,722555..722662,722732..723012,723042..723138,723171..723273,723316..723416,723470..723565))	Theileria annulata	3862104
TA14255	CDS	TA14255	NC_011099.1	723598	724825	R	chr2.cand.343 - protein kinase; ser/thr protein kinase, putative	complement(join(723598..723669,723723..724018,724090..724215,724369..724491,724525..724825))	Theileria annulata	3862103
TA14250	CDS	TA14250	NC_011099.1	725171	727324	D	small overlap at the 3' end with gene TA14245; 1 probable transmembrane helix predicted for TA14250 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA14250 by SignalP 2.0 HMM (Signal peptide probability 0.670, signal anchor probability 0.191) with cleavage site probability 0.440 between residues 22 and 23; uncharacterized protein	join(725171..726457,726524..727324)	Theileria annulata	3862102
TA14245	CDS	TA14245	NC_011099.1	727311	729905	R	small overlap at the 3' end with gene TA14250; uncharacterized protein	complement(727311..729905)	Theileria annulata	3862101
TA14240	CDS	TA14240	NC_011099.1	730089	732014	D	all_bases.cand.1381 - leu/phe-trna protein transferase; leu/phe-trna protein transferase, putative	join(730089..730782,730950..731182,731252..731492,731652..731753,731781..731890,731928..732014)	Theileria annulata	3862100
TA14230	CDS	TA14230	NC_011099.1	732165	732816	D	chr2.C.cand.170 - hypothetical protein, conserved, pfb0590W, signal peptide; uncharacterized protein	join(732165..732497,732640..732816)	Theileria annulata	3862098
TA14225	CDS	TA14225	NC_011099.1	733285	734931	D	DnaJ protein, putative; chr2.C.cand.171 - DnaJ protein; molecular chaperone, putative	join(733285..733293,733327..733449,733534..733738,733861..734040,734196..734287,734325..734407,734572..734653,734704..734931)	Theileria annulata	3862097
TA14220	CDS	TA14220	NC_011099.1	735068	736241	R	all_bases.C.cand.436 - hypothetical protein; 2 probable transmembrane helices predicted for TA14220 by TMHMM2.0 at aa 62-84 and 149-168; uncharacterized protein	complement(join(735068..735349,735468..735581,735876..736020,736138..736241))	Theileria annulata	3862096
TA14215	CDS	TA14215	NC_011099.1	736468	741343	D	chr2.C.cand.172 - hypothetical protein, signal peptide, TSP1 Thrombospondin type 1 repeat, SMART SM0209, transmembrane; membrane protein; 1 probable transmembrane helix predicted for TA14215 by TMHMM2.0 at aa 1318-1340; Signal peptide predicted for TA14215 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.001) with cleavage site probability 0.426 between residues 16 and 17; uncharacterized protein	join(736468..736550,736746..737005,737130..737318,737386..737439,737577..738194,738249..739439,739499..740790,740891..741036,741124..741343)	Theileria annulata	3862095
TA14210	CDS	TA14210	NC_011099.1	741521	742305	D	chr2.C.cand.173 - hypothetical protein, transmembrane; membrane protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; 4 probable transmembrane helices predicted for TA14210 by TMHMM2.0 at aa 82-101, 121-140, 147-169 and 193-215; Signal peptide predicted for TA14210 by SignalP 2.0 HMM (Signal peptide probability 0.861, signal anchor probability 0.000) with cleavage site probability 0.529 between residues 17 and 18; uncharacterized protein	join(741521..741850,741943..742305)	Theileria annulata	3862094
TA14205	CDS	TA14205	NC_011099.1	742730	745062	D	all_bases.cand.1385 - signal sequence; secreted protein, putative; Signal peptide predicted for TA14205 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.939 between residues 19 and 20; uncharacterized protein	join(742730..742765,742801..745062)	Theileria annulata	3862093
TA14200	CDS	TA14200	NC_011099.1	745143	748329	R	chr2.cand.341 - signal peptide, PF00090 Thrombospondin type 1 domain; secreted protein, putative; 1 probable transmembrane helix predicted for TA14200 by TMHMM2.0 at aa 646-665; Signal peptide predicted for TA14200 by SignalP 2.0 HMM (Signal peptide probability 0.893, signal anchor probability 0.000) with cleavage site probability 0.439 between residues 15 and 16; uncharacterized protein	complement(join(745143..745896,746087..747188,747346..747537,747597..748329))	Theileria annulata	3862092
TA14195	CDS	TA14195	NC_011099.1	748575	749635	R	all_bases.C.cand.434 - ring finger; uncharacterized protein	complement(join(748575..749111,749141..749227,749339..749490,749521..749635))	Theileria annulata	3862091
TA14190	CDS	TA14190	NC_011099.1	750312	750622	D	chr2.C.cand.175 - score = 7.98; uncharacterized protein	join(750312..750360,750429..750622)	Theileria annulata	3862090
TA14185	CDS	TA14185	NC_011099.1	751127	752766	D	chr2.C.cand.176 - ATP-dependent RNA helicase; ATP-dependent RNA helicase, putative	join(751127..751231,751300..751468,751568..751633,751713..752553,752697..752766)	Theileria annulata	3862089
TA14165	CDS	TA14165	NC_011099.1	753196	753411	D	uncharacterized protein	753196..753411	Theileria annulata	3861611
TA14160	CDS	TA14160	NC_011099.1	753808	753963	D	uncharacterized protein	753808..753963	Theileria annulata	3861610
TA14155	CDS	TA14155	NC_011099.1	754392	755138	D	histone h2a variant; histone H2A variant, putative	join(754392..754470,754759..755138)	Theileria annulata	3861609
TA14150	CDS	TA14150	NC_011099.1	755489	756105	D	chr2.C.cand.178 - you2-like c2c2 zinc finger protein; YOU2-like zinc finger protein, putative	join(755489..755782,755971..756105)	Theileria annulata	3861608
TA14145	CDS	TA14145	NC_011099.1	756236	757216	D	uncharacterized protein	join(756236..756256,756269..756339,756396..756449,756481..756629,756749..756909,757079..757216)	Theileria annulata	3861607
TA14140	CDS	TA14140	NC_011099.1	757381	758454	R	transmembrane protein, signal peptide; secreted protein, putative; Tpr-related protein family member, putative	complement(757381..758454)	Theileria annulata	3861606
TA14135	CDS	TA14135	NC_011099.1	758548	759276	R	transmembrane protein, signal peptide; secreted protein, putative; 2 probable transmembrane helices predicted for TA14135 by TMHMM2.0 at aa 4-26 and 83-105; Signal peptide predicted for TA14135 by SignalP 2.0 HMM (Signal peptide probability 0.861, signal anchor probability 0.032) with cleavage site probability 0.535 between residues 23 and 24; Tpr-related protein family member, putative	complement(758548..759276)	Theileria annulata	3861605
TA14130	CDS	TA14130	NC_011099.1	759322	761467	R	transmembrane protein, signal peptide; secreted protein, putative; 1 probable transmembrane helix predicted for TA14130 by TMHMM2.0 at aa 622-644; Tpr-related protein family member, putative	complement(join(759322..760387,760469..760761,760812..761373,761430..761467))	Theileria annulata	3861604
TA14125	CDS	TA14125	NC_011099.1	761846	763239	D	uncharacterized protein	join(761846..762457,762490..763239)	Theileria annulata	3861603
TA14120	CDS	TA14120	NC_011099.1	763261	764820	R	chr2.cand.337 - hypothetical protein, similarity to T. parva fragment; Tpr-related protein family member, putative	complement(763261..764820)	Theileria annulata	3861602
TA14115	CDS	TA14115	NC_011099.1	764908	766071	R	chr2.cand.336 - 14-3-3 protein-like; 14-3-3 protein homologue, putative	complement(join(764908..765148,765251..765420,765521..765724,765822..765904,765999..766071))	Theileria annulata	3861601
TA14110	CDS	TA14110	NC_011099.1	766731	767078	D	chr2.C.cand.181 - hypothetical protein, histone-like; uncharacterized protein	766731..767078	Theileria annulata	3861600
TA14105	CDS	TA14105	NC_011099.1	767535	768894	R	mitochondrial carrier protein; mitochondrial solute carrier-like protein, putative	complement(join(767535..767690,767755..767873,768014..768640,768849..768894))	Theileria annulata	3861599
TA14100	CDS	TA14100	NC_011099.1	769265	770439	R	chr2.cand.334 - hypothetical protein; uncharacterized protein	complement(join(769265..769372,769467..769614,769799..769860,769894..770439))	Theileria annulata	3861598
TA14095	CDS	TA14095	NC_011099.1	770462	772646	D	all_bases.cand.1391 - GTPase of unknown function; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14095 by SignalP 2.0 HMM (Signal peptide probability 0.944, signal anchor probability 0.000) with cleavage site probability 0.365 between residues 17 and 18; uncharacterized protein	join(770462..770531,770572..771294,771408..771553,771679..772129,772174..772646)	Theileria annulata	3861597
TA14090	CDS	TA14090	NC_011099.1	772772	773395	R	chr2.cand.333 - thioredoxin, signal sequence, transmembrane; 1 probable transmembrane helix predicted for TA14090 by TMHMM2.0 at aa 111-133; T. parva transmembrane protein 17 homologue, putative	complement(join(772772..773025,773194..773395))	Theileria annulata	3861596
TA14085	CDS	TA14085	NC_011099.1	773480	773740	R	chr2.cand.333 - thioredoxin, signal sequence, transmembrane; 1 probable transmembrane helix predicted for TA14085 by TMHMM2.0 at aa 46-68; Signal peptide predicted for TA14085 by SignalP 2.0 HMM (Signal peptide probability 0.951, signal anchor probability 0.000) with cleavage site probability 0.316 between residues 16 and 17; uncharacterized protein	complement(773480..773740)	Theileria annulata	3861595
TA14080	CDS	TA14080	NC_011099.1	774033	776051	R	chr2.cand.332 - hypothetical protein; uncharacterized protein	complement(join(774033..774187,774316..774758,774892..776051))	Theileria annulata	3861594
TA14075	CDS	TA14075	NC_011099.1	776813	777689	D	proliferating cell nuclear antigen 2 (PCNA2), putative	join(776813..777155,777247..777689)	Theileria annulata	3861593
TA14060	CDS	TA14060	NC_011099.1	777908	779568	D	chr2.C.cand.184 - hypothetical protein; uncharacterized protein	join(777908..779380,779461..779568)	Theileria annulata	3861734
TA14055	CDS	TA14055	NC_011099.1	779700	781296	D	chr2.C.cand.186 - PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase; cyclophilin, putative	join(779700..779919,780002..780070,780147..780212,780241..780383,780413..780513,780544..780877,780909..780999,781040..781296)	Theileria annulata	3861733
TA14050	CDS	TA14050	NC_011099.1	781561	781878	D	chr2.C.cand.187 - ubiquitin-like protein nedd8 homologue; ubiquitin-like protein (NEDD8 homologue), putative	join(781561..781663,781697..781732,781787..781878)	Theileria annulata	3861732
TA14045	CDS	TA14045	NC_011099.1	781897	783694	R	U4/U6 snRNP-associated protein, putative	complement(join(781897..781988,782029..782109,782276..782495,782584..783369,783403..783630,783692..783694))	Theileria annulata	3861731
TA14040	CDS	TA14040	NC_011099.1	783910	787153	D	chr2.C.cand.189 - hypothetical protein; uncharacterized protein	join(783910..784380,784411..784521,784552..784673,784736..785510,785541..785666,785697..785974,786009..786120,786152..786228,786258..786792,786848..787153)	Theileria annulata	3861730
TA14035	CDS	TA14035	NC_011099.1	787259	788080	R	chr2.cand.330 - hypothetical protein; uncharacterized protein	complement(787259..788080)	Theileria annulata	3861729
TA14030	CDS	TA14030	NC_011099.1	788958	792293	D	chr2.C.cand.191 - possible signal anchor, transmembrane protein; 11 probable transmembrane helices predicted for TA14030 by TMHMM2.0 at aa 12-34, 39-61, 68-87, 91-113, 126-148, 158-180, 234-256, 276-298, 305-322, 337-359 and 799-821; Signal anchor predicted for TA14030 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.954) with cleavage site probability 0.001 between residues 25 and 26; uncharacterized protein	788958..792293	Theileria annulata	3861728
TA14025	CDS	TA14025	NC_011099.1	792617	796123	D	chr2.C.cand.192 - signal peptide, transmembrane protein; 13 probable transmembrane helices predicted for TA14025 by TMHMM2.0 at aa 20-42, 57-74, 79-98, 103-121, 128-147, 151-173, 185-204, 224-243, 318-337, 385-407, 414-436, 859-881 and 985-1007; uncharacterized protein	792617..796123	Theileria annulata	3861727
TA14020	CDS	TA14020	NC_011099.1	796456	797796	D	chr2.C.cand.193 - TLDc domain in TBC and LysM domain containing proteins; uncharacterized protein	796456..797796	Theileria annulata	3861726
TA14015	CDS	TA14015	NC_011099.1	797914	801569	D	uncharacterized protein	join(797914..800400,800479..800788,800859..800974,801044..801355,801387..801569)	Theileria annulata	3861725
TA14010	CDS	TA14010	NC_011099.1	802152	802681	R	all_bases.C.cand.423 - hypothetical protein; uncharacterized protein	complement(join(802152..802462,802492..802681))	Theileria annulata	3861724
TA14005	CDS	TA14005	NC_011099.1	802915	803772	D	chr2.C.cand.196 - hypothetical protein; uncharacterized protein	802915..803772	Theileria annulata	3861723
TA14000	CDS	TA14000	NC_011099.1	803839	804704	R	all_bases.C.cand.422 - hypothetical protein, conserved, pfi0770C; uncharacterized protein	complement(join(803839..803991,804023..804144,804307..804376,804408..804520,804605..804704))	Theileria annulata	3861722
TA13995	CDS	TA13995	NC_011099.1	804823	805782	R	all_bases.C.cand.421 - casein kinase ii beta chain; casein kinase II beta chain, putative	complement(join(804823..804885,805028..805354,805383..805595,805675..805782))	Theileria annulata	3861721
TA13990	CDS	TA13990	NC_011099.1	806156	809385	D	chr2.C.cand.197 - hypothetical protein; uncharacterized protein	join(806156..806564,806616..807971,808011..808430,808479..808952,808987..809019,809141..809385)	Theileria annulata	3861720
TA13985	CDS	TA13985	NC_011099.1	809964	811827	D	uncharacterized protein	join(809964..810533,810793..811827)	Theileria annulata	3861719
TA13980	CDS	TA13980	NC_011099.1	811911	816454	R	chr2.cand.322 - hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA13980 by SignalP 2.0 HMM (Signal peptide probability 0.712, signal anchor probability 0.009) with cleavage site probability 0.269 between residues 19 and 20; uncharacterized protein	complement(join(811911..812102,812277..812869,813099..813184,813246..813367,813539..813709,814008..814235,814396..815138,815298..815357,815544..815682,815816..815873,815910..816454))	Theileria annulata	3861718
TA13975	CDS	TA13975	NC_011099.1	816656	818430	D	peptidyl-prolyl cis-trans isomerase, putative	join(816656..817097,817325..818430)	Theileria annulata	3861717
TA13970	CDS	TA13970	NC_011099.1	818823	822884	R	chr2.cand.321 - hypothetical protein; Signal peptide predicted for TA13970 by SignalP 2.0 HMM (Signal peptide probability 0.608, signal anchor probability 0.000) with cleavage site probability 0.359 between residues 24 and 25; uncharacterized protein	complement(join(818823..819028,819122..822884))	Theileria annulata	3861928
TA13965	CDS	TA13965	NC_011099.1	823238	824494	R	chr2.cand.320 - hypothetical protein; uncharacterized protein	complement(823238..824494)	Theileria annulata	3861927
TA13950	CDS	TA13950	NC_011099.1	824888	831264	R	pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit, putative	complement(join(824888..826680,826947..827189,827350..829254,829816..830871,831084..831264))	Theileria annulata	3861924
TA13945	CDS	TA13945	NC_011099.1	831993	832583	D	chr2.C.cand.201 - guanylate kinase; guanylate kinase, putative	831993..832583	Theileria annulata	3861923
TA13940	CDS	TA13940	NC_011099.1	832872	835244	D	chr2.C.cand.202 - membrane protein, putative; 5 probable transmembrane helices predicted for TA13940 by TMHMM2.0 at aa 81-103, 143-165, 559-581, 641-663 and 705-727; uncharacterized protein	join(832872..833374,833431..834760,834891..835244)	Theileria annulata	3861922
TA13935	CDS	TA13935	NC_011099.1	835719	836341	R	chr2.cand.314 - hypothetical protein, signal peptide, apicoplast targetting sequence; hypothetical apicoplast protein; uncharacterized protein	complement(join(835719..835941,836076..836341))	Theileria annulata	3861921
TA13930	CDS	TA13930	NC_011099.1	836486	836764	D	1 probable transmembrane helix predicted for TA13930 by TMHMM2.0 at aa 19-41; Signal anchor predicted for TA13930 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.979) with cleavage site probability 0.000 between residues 40 and 41; uncharacterized protein	836486..836764	Theileria annulata	3861920
TA13925	CDS	TA13925	NC_011099.1	836767	837156	D	chr2.C.cand.203 - score = 10.91; uncharacterized protein	join(836767..836830,836901..836948,837002..837156)	Theileria annulata	3861919
TA13920	CDS	TA13920	NC_011099.1	838034	838453	D	GPI-Anchor Signal predicted for TA13920 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	join(838034..838145,838254..838453)	Theileria annulata	3861918
TA13915	CDS	TA13915	NC_011099.1	838599	840539	R	chr2.cand.313 - hypothetical protein; uncharacterized protein	complement(838599..840539)	Theileria annulata	3861917
TA13910	CDS	TA13910	NC_011099.1	841109	842389	D	chr2.C.cand.205 - PF00573 60S Ribosomal protein L4/L1 family; 60S ribosomal subunit protein L4/L1, putative	841109..842389	Theileria annulata	3861916
TA13905	CDS	TA13905	NC_011099.1	843754	846896	D	hypothetical protein; 8 probable transmembrane helices predicted for TA13905 by TMHMM2.0 at aa 93-115, 248-270, 282-304, 319-341, 348-370, 400-422, 474-496 and 506-525; uncharacterized protein	join(843754..844088,844342..844653,844861..844951,845140..845290,845387..845496,845520..845573,845675..845741,845864..845994,846080..846367,846558..846768,846826..846896)	Theileria annulata	3861915
TA13895	CDS	TA13895	NC_011099.1	847017	847673	D	chr2.C.cand.208 - PF01168 Alanine racemase, N-terminal domain UPF0001, possible proline synthetase associated protein; proline synthetase associated protein, putative	join(847017..847395,847435..847673)	Theileria annulata	3861913
TA13890	CDS	TA13890	NC_011099.1	847773	851496	R	chr2.cand.311 - hypothetical protein; 1 probable transmembrane helix predicted for TA13890 by TMHMM2.0 at aa 993-1015; uncharacterized protein	complement(join(847773..848390,848489..848715,848783..849538,849630..850205,850304..851059,851202..851496))	Theileria annulata	3861912
TA13885	CDS	TA13885	NC_011099.1	852106	852696	D	chr2.C.cand.211 - hypothetical protein, signal peptide; secreted protein, putative; Signal peptide predicted for TA13885 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.976 between residues 17 and 18; uncharacterized protein	852106..852696	Theileria annulata	3861911
TA13880	CDS	TA13880	NC_011099.1	853067	855468	R	hypothetical protein, conserved, pfe0380C; uncharacterized protein	complement(join(853067..853966,854140..854337,854560..854777,855020..855203,855319..855468))	Theileria annulata	3861910
TA13875	CDS	TA13875	NC_011099.1	855699	858695	R	membrane protein, Rhomboid family; chr2.cand.307 - PF01694 Rhomboid family - membrane protein, protease; 7 probable transmembrane helices predicted for TA13875 by TMHMM2.0 at aa 267-289, 391-413, 423-445, 452-471, 481-498, 503-520 and 600-622; uncharacterized protein	complement(join(855699..855890,855996..856141,856352..856511,856637..856897,857102..857192,857476..857852,857901..858695))	Theileria annulata	3861812
TA13870	CDS	TA13870	NC_011099.1	859209	860065	R	chr2.cand.306 - hypothetical protein, conserved, pfi1455C; uncharacterized protein	complement(join(859209..859759,859867..860065))	Theileria annulata	3861811
TA13865	CDS	TA13865	NC_011099.1	860455	861484	R	chr2.cand.305 - PF00227 proteasome A-type and B-type; proteasome subunit y, putative	complement(join(860455..860900,861046..861484))	Theileria annulata	3861810
TA13860	CDS	TA13860	NC_011099.1	861865	862756	D	chr2.C.cand.212 - Rab family small GTPase, signal peptide; GTP-binding protein, Rab-family, putative	join(861865..862259,862339..862756)	Theileria annulata	3861809
TA13855	CDS	TA13855	NC_011099.1	862880	865354	R	nucleolar protein, PF01189 NOL1/NOP2/sun family; nucleolar protein, putative	complement(join(862880..863022,863422..863744,863985..864123,864239..864429,864617..864708,864749..864828,864931..865354))	Theileria annulata	3861808
TA13850	CDS	TA13850	NC_011099.1	865453	866100	R	chr2.cand.303 - hypothetical protein, conserved, pfi1565W, PF00235 profilin; uncharacterized protein	complement(join(865453..865872,866026..866100))	Theileria annulata	3861807
TA13845	CDS	TA13845	NC_011099.1	866643	869273	D	hypothetical protein, conserved, pfi1560C, signal peptide, transmembrane/DUF21 domain; 3 probable transmembrane helices predicted for TA13845 by TMHMM2.0 at aa 20-42, 84-103 and 110-132; Signal anchor predicted for TA13845 by SignalP 2.0 HMM (Signal peptide probability 0.089, signal anchor probability 0.836) with cleavage site probability 0.043 between residues 41 and 42; uncharacterized protein	join(866643..866965,867290..867828,868221..868399,868628..868906,869061..869273)	Theileria annulata	3861806
TA13840	CDS	TA13840	NC_011099.1	869509	870166	R	hypothetical protein; 1 probable transmembrane helix predicted for TA13840 by TMHMM2.0 at aa 126-148; uncharacterized protein	complement(join(869509..869720,869750..869875,869905..870085,870119..870166))	Theileria annulata	3861805
TA13835	CDS	TA13835	NC_011099.1	871141	873724	D	chr2.C.cand.215 - sulfate transporter; 10 probable transmembrane helices predicted for TA13835 by TMHMM2.0 at aa 169-191, 198-220, 235-257, 264-286, 301-323, 330-352, 398-420, 432-454, 469-491 and 539-571; sulfate transporter, putative	join(871141..871534,871857..873427,873522..873647,873677..873724)	Theileria annulata	3861804
TA13830	CDS	TA13830	NC_011099.1	873827	874604	D	chr2.C.cand.217 - hypothetical protein; uncharacterized protein	join(873827..873865,873895..874248,874281..874381,874411..874530,874568..874604)	Theileria annulata	3861803
TA13825	CDS	TA13825	NC_011099.1	875121	875762	D	chr2.C.cand.218 - signal peptide, transmembrane; 1 probable transmembrane helix predicted for TA13825 by TMHMM2.0 at aa 187-209; Signal peptide predicted for TA13825 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.719 between residues 16 and 17; GPI-Anchor Signal predicted for TA13825 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	875121..875762	Theileria annulata	3861802
TA13820	CDS	TA13820	NC_011099.1	876151	876750	D	chr2.C.cand.219 - hypothetical protein, signal peptide, transmembrane, low similarity to ts-chitose type 23 kDa piroplasm surface protein; 1 probable transmembrane helix predicted for TA13820 by TMHMM2.0 at aa 176-198; GPI-Anchor Signal predicted for TA13820 by DGPI v2.04 with cleavage site probability 0.24939999 near 174; uncharacterized protein	876151..876750	Theileria annulata	3861801
TA13815	CDS	TA13815	NC_011099.1	877110	877751	D	chr2.C.cand.220 - hypothetical protein, signal peptide transmembrane, low similarity to ts-chitose type 23 kDa piroplasm surface protein; 2 probable transmembrane helices predicted for TA13815 by TMHMM2.0 at aa 4-21 and 195-212; Signal peptide predicted for TA13815 by SignalP 2.0 HMM (Signal peptide probability 0.975, signal anchor probability 0.012) with cleavage site probability 0.664 between residues 16 and 17; GPI-Anchor Signal predicted for TA13815 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	877110..877751	Theileria annulata	3861800
TA13810	CDS	TA13810	NC_011099.1	877952	878641	D	chr2.C.cand.221 - ts-chitose type 23 kDa piroplasm surface protein, signal peptide, transmembrane; 1 probable transmembrane helix predicted for TA13810 by TMHMM2.0 at aa 204-226; Signal peptide predicted for TA13810 by SignalP 2.0 HMM (Signal peptide probability 0.930, signal anchor probability 0.000) with cleavage site probability 0.401 between residues 24 and 25; GPI-Anchor Signal predicted for TA13810 by DGPI v2.04, no cleavage site predicted; ts-chitose type 23 kDa piroplasm surface-like protein, putative	877952..878641	Theileria annulata	3861799
TA13805	CDS	TA13805	NC_011099.1	879945	881790	R	PF01798 Putative snoRNA binding domain; nucleolar protein nop5, putative	complement(join(879945..880170,880412..881551,881666..881790))	Theileria annulata	3861798
TA13800	CDS	TA13800	NC_011099.1	882073	882888	D	chr2.C.cand.223 - hypothetical protein; uncharacterized protein	882073..882888	Theileria annulata	3861797
TA13790	CDS	TA13790	NC_011099.1	882952	884514	R	PF00149 Calcineurin-like phosphoesterase; (Lariat) debranching enzyme (dbr1 homologue), putative	complement(join(882952..883180,883254..883714,883766..884003,884182..884456,884500..884514))	Theileria annulata	3861795
TA13785	CDS	TA13785	NC_011099.1	884680	885198	D	2 probable transmembrane helices predicted for TA13785 by TMHMM2.0 at aa 29-51 and 82-104; Signal anchor predicted for TA13785 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.660) with cleavage site probability 0.000 between residues 47 and 48; uncharacterized protein	join(884680..884733,884768..884852,884887..884934,885035..885198)	Theileria annulata	3861794
TA13780	CDS	TA13780	NC_011099.1	885258	886409	R	chr2.cand.299 - hypothetical protein, conserved, pfi1425W, some similarity to tif; uncharacterized protein	complement(885258..886409)	Theileria annulata	3861793
TA13775	CDS	TA13775	NC_011099.1	886659	887012	D	GPI-Anchor Signal predicted for TA13775 by DGPI v2.04 with cleavage site probability 0.3306 near 47; uncharacterized protein	join(886659..886705,886802..887012)	Theileria annulata	3861909
TA13770	CDS	TA13770	NC_011099.1	887029	887659	D	all_bases.cand.1420 - small GTPase; small GTPase, putative	join(887029..887161,887232..887659)	Theileria annulata	3861908
TA13765	CDS	TA13765	NC_011099.1	887721	889034	R	chr2.cand.298 - score = 10.43; chr2.cand.298 - NADH-cytochrome b5 reductase, putative, Oxidoreductase NAD-binding domain; NADH-cytochrome b5 reductase, putative	complement(join(887721..888048,888110..888484,888555..888755,888787..889034))	Theileria annulata	3861907
TA13760	CDS	TA13760	NC_011099.1	889178	889861	R	chr2.cand.297 - u1 small nuclear ribonucleoprotein 70 kDa; U1 small nuclear ribonucleoprotein 70 kDa, putative	complement(889178..889861)	Theileria annulata	3861906
TA13755	CDS	TA13755	NC_011099.1	890339	891790	D	chr2.C.cand.225 - hypothetical protein, signal peptide, transmembrane; membrane protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA13755 by TMHMM2.0 at aa 176-198, 285-302 and 322-344; Signal peptide predicted for TA13755 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.694 between residues 18 and 19; uncharacterized protein	join(890339..890428,890468..891790)	Theileria annulata	3861905
TA13750	CDS	TA13750	NC_011099.1	892321	896166	R	isoleucyl-trna synthetase, putative, PF00133 tRNA synthetases class I (I, L, M and V); Signal peptide predicted for TA13750 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.000) with cleavage site probability 0.532 between residues 15 and 16; isoleucyl-trna synthetase, putative	complement(join(892321..892411,892443..892576,892666..896166))	Theileria annulata	3861904
TA13745	CDS	TA13745	NC_011099.1	896245	897304	R	chr2.cand.294 - hypothetical protein; uncharacterized protein	complement(join(896245..896319,896414..897304))	Theileria annulata	3861903
TA13730	CDS	TA13730	NC_011099.1	897783	898449	D	chr2.C.cand.226 - hypothetical protein, conserved, pfl1195W; uncharacterized protein	join(897783..898054,898086..898449)	Theileria annulata	3861900
TA13725	CDS	TA13725	NC_011099.1	898693	899163	R	RNA binding protein, possible branch site protein; RNA binding protein, putative	complement(join(898693..898804,898834..898938,898981..899058,899090..899163))	Theileria annulata	3861899
TA13720	CDS	TA13720	NC_011099.1	899955	904841	D	chr2.C.cand.227 - hypothetical protein; 1 probable transmembrane helix predicted for TA13720 by TMHMM2.0 at aa 1524-1541; Signal peptide predicted for TA13720 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.683 between residues 19 and 20; GPI-Anchor Signal predicted for TA13720 by DGPI v2.04 with cleavage site probability 0.516 near 1520; uncharacterized protein	join(899955..900056,900203..903092,903193..904841)	Theileria annulata	3861898
TA13715	CDS	TA13715	NC_011099.1	904904	906696	R	chr2.cand.293 - 5'-3' exonuclease; 5'-3' exonuclease, putative	complement(join(904904..905143,905234..905361,905454..906424,906530..906696))	Theileria annulata	3861897
TA13710	CDS	TA13710	NC_011099.1	906863	907686	D	chr2.C.cand.228 - hypothetical protein, conserved, pfb0177C; uncharacterized protein	join(906863..906979,907047..907156,907226..907259,907292..907349,907402..907499,907564..907686)	Theileria annulata	3861896
TA13705	CDS	TA13705	NC_011099.1	909289	910296	R	chr2.cand.292 - hypothetical protein; uncharacterized protein	complement(909289..910296)	Theileria annulata	3861895
TA13700	CDS	TA13700	NC_011099.1	910845	911786	R	chr2.cand.291 - hypothetical protein; uncharacterized protein	complement(910845..911786)	Theileria annulata	3861894
TA13695	CDS	TA13695	NC_011099.1	912057	912425	D	chr2.C.cand.229 - hypothetical protein; uncharacterized protein	912057..912425	Theileria annulata	3861893
TA13690	CDS	TA13690	NC_011099.1	913250	914152	D	chr2.C.cand.230 - hypothetical protein; uncharacterized protein	913250..914152	Theileria annulata	3861892
TA13685	CDS	TA13685	NC_011099.1	914489	915557	D	1 probable transmembrane helix predicted for TA13685 by TMHMM2.0 at aa 273-295; uncharacterized protein	join(914489..914544,914638..915116,915172..915325,915350..915557)	Theileria annulata	3861891
TA13680	CDS	TA13680	NC_011099.1	916074	918946	D	chr2.C.cand.232 - DNA replication licensing factor; DNA replication licensing factor, putative	join(916074..916471,916548..916905,916948..917803,917847..918946)	Theileria annulata	3861832
TA13675	CDS	TA13675	NC_011099.1	919057	919619	R	all_bases.C.cand.392 - hypothetical protein; uncharacterized protein	complement(join(919057..919239,919271..919355,919387..919443,919495..919619))	Theileria annulata	3861831
TA13670	CDS	TA13670	NC_011099.1	919843	921191	R	ubiquitin fusion degradation protein (UFD1 homologue), putative	complement(join(919843..919884,919905..920126,920174..920267,920346..920476,920528..920706,920726..920833,921155..921191))	Theileria annulata	3861830
TA13665	CDS	TA13665	NC_011099.1	921279	922017	D	chr2.C.cand.233 - hypothetical protein; 4 probable transmembrane helices predicted for TA13665 by TMHMM2.0 at aa 23-40, 47-69, 74-91 and 104-123; uncharacterized protein	join(921279..921435,921498..921563,921604..921659,921709..921805,921872..922017)	Theileria annulata	3861829
TA13660	CDS	TA13660	NC_011099.1	922084	924143	R	all_bases.C.cand.390 - N2,N2-dimethylguanosine tRNA methyltransferase; N2,N2-dimethylguanosine tRNA methyltransferase, putative	complement(join(922084..922210,922277..922438,922506..922588,922618..923786,923832..923918,923987..924143))	Theileria annulata	3861828
TA13655	CDS	TA13655	NC_011099.1	924794	928789	D	chr2.C.cand.234 - calcium-transporting ATPase; 8 probable transmembrane helices predicted for TA13655 by TMHMM2.0 at aa 69-88, 98-117, 216-238, 271-288, 309-331, 1049-1071, 1156-1178 and 1193-1210; calcium-transporting ATPase, putative	join(924794..925976,926055..928789)	Theileria annulata	3861827
TA13650	CDS	TA13650	NC_011099.1	929200	929859	D	chr2.C.cand.235 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative	929200..929859	Theileria annulata	3861826
TA13645	CDS	TA13645	NC_011099.1	929924	934513	R	chr2.cand.285 - hypothetical protein, conserved, mal8p1.134, contains 5 x SMART SM0239 C2 Protein kinase C conserved region 2 (CalB), transmembrane domain; 1 probable transmembrane helix predicted for TA13645 by TMHMM2.0 at aa 1395-1414; uncharacterized protein	complement(join(929924..931206,931275..932631,932717..933465,933531..933666,933734..934069,934127..934513))	Theileria annulata	3861825
TA13640	CDS	TA13640	NC_011099.1	935215	936250	D	chr2.C.cand.236 - hypothetical protein, possible cdk-activating kinase assembly factor; CDK-activating kinase assembly factor, putative	join(935215..935384,935439..935512,935567..935655,935727..935840,935875..935943,936026..936084,936115..936250)	Theileria annulata	3861824
TA13635	CDS	TA13635	NC_011099.1	936391	936957	D	chr2.C.cand.236 - hypothetical protein; uncharacterized protein	join(936391..936683,936723..936957)	Theileria annulata	3861823
TA13625	CDS	TA13625	NC_011099.1	937059	937586	D	chr2.C.cand.237 - hypothetical protein; uncharacterized protein	937059..937586	Theileria annulata	3861821
TA13620	CDS	TA13620	NC_011099.1	937654	939615	D	chr2.C.cand.237 - hypothetical protein; uncharacterized protein	937654..939615	Theileria annulata	3861820
TA13615	CDS	TA13615	NC_011099.1	939738	940937	D	chr2.C.cand.237 - hypothetical protein; uncharacterized protein	join(939738..940254,940312..940529,940582..940639,940762..940937)	Theileria annulata	3861819
TA13610	CDS	TA13610	NC_011099.1	941072	944519	D	all_bases.cand.1431 - ATP dependent RNA helicase; ATP-dependent RNA helicase, putative	join(941072..941120,941236..942702,942790..943232,943302..943759,943793..944138,944170..944354,944384..944519)	Theileria annulata	3861818
TA13605	CDS	TA13605	NC_011099.1	944883	946288	D	chr2.C.cand.239 - hypothetical protein, conserved, DUF 259; uncharacterized protein	join(944883..945029,945113..945165,945246..945357,945393..945488,945554..945716,945788..945905,945981..946036,946089..946288)	Theileria annulata	3861817
TA13600	CDS	TA13600	NC_011099.1	946502	947990	R	chr2.cand.283 - DnaJ domain protein; DnaJ domain protein; molecular chaperone, putative	complement(join(946502..947508,947546..947990))	Theileria annulata	3861816
TA13595	CDS	TA13595	NC_011099.1	949438	950629	D	chr2.C.cand.240 - hypothetical protein; uncharacterized protein	join(949438..949567,949649..950310,950483..950629)	Theileria annulata	3861815
TA13590	CDS	TA13590	NC_011099.1	951032	954967	D	chr2.C.cand.241 - hypothetical protein; 4 probable transmembrane helices predicted for TA13590 by TMHMM2.0 at aa 7-29, 1170-1189, 1196-1213 and 1264-1283; Signal peptide predicted for TA13590 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.012) with cleavage site probability 0.378 between residues 24 and 25; uncharacterized protein	951032..954967	Theileria annulata	3861814
TA13585	CDS	TA13585	NC_011099.1	955000	956751	R	chr2.cand.282 - SKIP/SNW domain; chromatin-binding protein, putative	complement(join(955000..955126,955205..955320,955363..956106,956163..956441,956506..956635,956735..956751))	Theileria annulata	3861813
TA13580	CDS	TA13580	NC_011099.1	957862	958899	D	chr2.C.cand.242 - ring/PHD finger; ring finger protein, putative; uncharacterized protein	957862..958899	Theileria annulata	3862469
TA13565	CDS	TA13565	NC_011099.1	959287	961914	D	chr2.C.cand.243 - helicase; DNA helicase (SGS1 homologue), putative	959287..961914	Theileria annulata	3862466
TA13560	CDS	TA13560	NC_011099.1	962021	963522	R	chr2.cand.281 - putative centromere/microtubule binding protein, belongs to the trub family of pseudouridine synthases, contains PF01509 TruB family pseudouridylate synthase (N terminal domain), PF01472 PUA domain; centromere/microtubule binding protein, putative	complement(join(962021..962857,962923..962987,963049..963325,963439..963522))	Theileria annulata	3862465
TA13555	CDS	TA13555	NC_011099.1	964437	971852	D	chr2.C.cand.244 - hypothetical protein; uncharacterized protein	964437..971852	Theileria annulata	3862464
TA13550	CDS	TA13550	NC_011099.1	972375	973705	D	all_bases.cand.1438 - peptidase C54 domain; autophagy-related peptidase, putative	join(972375..972989,973047..973072,973102..973288,973451..973567,973598..973705)	Theileria annulata	3862463
TA13545	CDS	TA13545	NC_011099.1	973907	977247	D	chr2.C.cand.246 - hypothetical protein; uncharacterized protein	join(973907..973985,974057..977247)	Theileria annulata	3862462
TA13540	CDS	TA13540	NC_011099.1	977369	985339	R	chr2.cand.277 - hypothetical protein, contains 2 potential PF00027 cyclic nucleotide binding domains; uncharacterized protein	complement(977369..985339)	Theileria annulata	3862461
TA13535	CDS	TA13535	NC_011099.1	985552	986382	R	all_bases.C.cand.378 - hypothetical protein; uncharacterized protein	complement(join(985552..985833,985868..986027,986237..986382))	Theileria annulata	3862460
TA13530	CDS	TA13530	NC_011099.1	986662	988896	D	chr2.C.cand.251 - phosphate transporter, signal peptide; 9 probable transmembrane helices predicted for TA13530 by TMHMM2.0 at aa 7-26, 46-68, 89-111, 145-167, 180-202, 230-252, 485-502, 531-553 and 715-737; Signal peptide predicted for TA13530 by SignalP 2.0 HMM (Signal peptide probability 0.634, signal anchor probability 0.363) with cleavage site probability 0.220 between residues 23 and 24; phosphate transporter, putative	986662..988896	Theileria annulata	3862459
TA13525	CDS	TA13525	NC_011099.1	989058	991244	R	chr2.cand.274 - hypothetical protein; uncharacterized protein	complement(join(989058..990308,990401..990979,991036..991127,991166..991244))	Theileria annulata	3862458
TA13520	CDS	TA13520	NC_011099.1	991924	993979	D	chr2.C.cand.252 - ATP-dependent RNA helicase; ATP-dependent RNA helicase, putative	join(991924..992142,992194..992488,992547..993979)	Theileria annulata	3862457
TA13515	CDS	TA13515	NC_011099.1	994148	995962	R	chr2.cand.273 - hypothetical protein, conserved, pfl1085W; uncharacterized protein	complement(994148..995962)	Theileria annulata	3862456
TA13510	CDS	TA13510	NC_011099.1	997778	998520	D	chr2.C.cand.253 - hypothetical protein, conserved, pfl1090W; uncharacterized protein	join(997778..998186,998273..998520)	Theileria annulata	3862455
TA13505	CDS	TA13505	NC_011099.1	998737	999396	R	all_bases.C.cand.374 - hypothetical protein; 1 probable transmembrane helix predicted for TA13505 by TMHMM2.0 at aa 21-43; Signal anchor predicted for TA13505 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.890) with cleavage site probability 0.001 between residues 36 and 37; uncharacterized protein	complement(join(998737..998842,998885..999083,999113..999152,999262..999396))	Theileria annulata	3862454
TA13500	CDS	TA13500	NC_011099.1	1000178	1001492	D	all_bases.cand.1445 - camp-dependent protein kinase regulatory subunit, 2 x cyclic nucleotide binding domains; cAMP-dependent protein kinase regulatory subunit, putative	join(1000178..1000210,1000279..1000368,1000404..1000472,1000538..1000596,1000627..1000714,1000748..1000815,1000865..1001187,1001253..1001317,1001346..1001492)	Theileria annulata	3862453
TA13495	CDS	TA13495	NC_011099.1	1001550	1002837	R	chr2.cand.271 - signal peptide, transmembrane; 5 probable transmembrane helices predicted for TA13495 by TMHMM2.0 at aa 13-35, 45-67, 148-165, 175-197 and 214-231; Signal anchor predicted for TA13495 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.977) with cleavage site probability 0.003 between residues 22 and 23; uncharacterized protein	complement(join(1001550..1002571,1002666..1002837))	Theileria annulata	3862452
TA13490	CDS	TA13490	NC_011099.1	1003252	1004436	D	chr2.C.cand.255 - hypothetical protein; uncharacterized protein	1003252..1004436	Theileria annulata	3862451
TA13485	CDS	TA13485	NC_011099.1	1004534	1005469	R	chr2.cand.270 - hypothetical protein; uncharacterized protein	complement(1004534..1005469)	Theileria annulata	3861968
TA13480	CDS	TA13480	NC_011099.1	1005614	1007831	R	chr2.cand.269 - DNAJ-like sec63 homologue; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA13480 by TMHMM2.0 at aa 23-45, 103-125 and 225-247; Signal anchor predicted for TA13480 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.891) with cleavage site probability 0.000 between residues 44 and 45; DNAJ-like sec63 homologue, putative	complement(join(1005614..1006821,1006890..1007005,1007042..1007118,1007172..1007371,1007462..1007831))	Theileria annulata	3861967
TA13475	CDS	TA13475	NC_011099.1	1008063	1009238	R	chr2.cand.268 - hypothetical protein; uncharacterized protein	complement(join(1008063..1008956,1009011..1009238))	Theileria annulata	3861966
TA13470	CDS	TA13470	NC_011099.1	1009558	1010642	R	chr2.cand.267 - vacuolar ATP synthase subunit d; vacuolar ATP synthase subunit d, putative	complement(join(1009558..1009666,1009767..1009846,1009882..1009947,1010014..1010117,1010175..1010370,1010438..1010555,1010605..1010642))	Theileria annulata	3861965
TA13460	CDS	TA13460	NC_011099.1	1010919	1011575	R	chr2.cand.266 - 40s ribosomal subunit protein s6; 40S ribosomal subunit protein S6, putative	complement(1010919..1011575)	Theileria annulata	3861963
TA13455	CDS	TA13455	NC_011099.1	1012356	1012791	R	One 3-prime exon possible; uncharacterized protein	complement(join(1012356..1012686,1012787..1012791))	Theileria annulata	3861962
TA13450	CDS	TA13450	NC_011099.1	1013344	1014874	D	chr2.C.cand.256 - hypothetical protein; uncharacterized protein	join(1013344..1013414,1013448..1014261,1014344..1014564,1014598..1014874)	Theileria annulata	3861961
TA13445	CDS	TA13445	NC_011099.1	1014954	1015841	R	chr2.cand.264 - hypothetical protein; uncharacterized protein	complement(join(1014954..1015220,1015254..1015841))	Theileria annulata	3861960
TA13440	CDS	TA13440	NC_011099.1	1016042	1016944	D	chr2.C.cand.257 - hypothetical protein; uncharacterized protein	1016042..1016944	Theileria annulata	3861959
TA13435	CDS	TA13435	NC_011099.1	1017257	1017523	R	chr2.cand.263 - score = 6.31; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA13435 by TMHMM2.0 at aa 31-53; Signal anchor predicted for TA13435 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.964) with cleavage site probability 0.000 between residues 46 and 47; uncharacterized protein	complement(1017257..1017523)	Theileria annulata	3861958
TA13430	CDS	TA13430	NC_011099.1	1017777	1019273	R	chr2.cand.262 - transmembrane; 10 probable transmembrane helices predicted for TA13430 by TMHMM2.0 at aa 20-42, 100-122, 134-156, 166-188, 201-223, 252-274, 287-309, 359-381, 401-423 and 433-455; Tpr-related protein family member, putative	complement(1017777..1019273)	Theileria annulata	3861957
TA13425	CDS	TA13425	NC_011099.1	1019482	1026889	R	hypothetical protein, conserved Theileria family, signal peptide; Signal peptide predicted for TA13425 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.003) with cleavage site probability 0.675 between residues 19 and 20; SfiI-subtelomeric fragment related protein family member, putative	complement(join(1019482..1019664,1019726..1020045,1020087..1020267,1020428..1020783,1020835..1026889))	Theileria annulata	3861956
TA13420	CDS	TA13420	NC_011099.1	1026918	1031336	R	chr2.cand.260 - hypothetical transmembrane protein; transmembrane protein, putative; 9 probable transmembrane helices predicted for TA13420 by TMHMM2.0 at aa 109-131, 317-339, 980-999, 1052-1074, 1084-1101, 1129-1151, 1191-1213, 1225-1247 and 1267-1289; uncharacterized protein	complement(join(1026918..1027345,1027384..1027519,1027551..1027688,1027720..1027887,1027979..1028037,1028093..1028279,1028338..1028434,1028495..1030904,1030951..1031065,1031133..1031336))	Theileria annulata	3861955
TA13415	CDS	TA13415	NC_011099.1	1031490	1031867	D	chr2.C.cand.260 - hypothetical protein, conserved, pf13_0296; uncharacterized protein	join(1031490..1031581,1031635..1031758,1031799..1031867)	Theileria annulata	3861954
TA13400	CDS	TA13400	NC_011099.1	1031953	1032993	R	chr2.cand.259 - hypothetical protein, signal peptide; uncharacterized protein	complement(1031953..1032993)	Theileria annulata	3861951
TA13395	CDS	TA13395	NC_011099.1	1033029	1033857	D	chr2.C.cand.261 - hypothetical protein, conserved, pf11_0163; uncharacterized protein	join(1033029..1033255,1033298..1033526,1033567..1033857)	Theileria annulata	3861950
TA13390	CDS	TA13390	NC_011099.1	1033920	1034428	D	all_bases.cand.1453 - hypothetical protein; uncharacterized protein	join(1033920..1033968,1034004..1034140,1034172..1034225,1034256..1034333,1034363..1034428)	Theileria annulata	3861949
TA13385	CDS	TA13385	NC_011099.1	1034650	1035990	R	chr2.cand.258 - conserved hypothetical transmembrane protein; 11 probable transmembrane helices predicted for TA13385 by TMHMM2.0 at aa 21-43, 58-80, 87-109, 119-141, 148-170, 174-191, 211-233, 248-267, 280-302, 317-339 and 352-374; Tpr-related protein family member, putative	complement(join(1034650..1035434,1035477..1035990))	Theileria annulata	3861566
TA13380	CDS	TA13380	NC_011099.1	1036531	1038925	R	RNA processing protein (crooked neck family), putative	complement(join(1036531..1036854,1036894..1037097,1037150..1037323,1037377..1038052,1038085..1038183,1038266..1038490,1038555..1038662,1038728..1038861,1038896..1038925))	Theileria annulata	3861565
TA13375	CDS	TA13375	NC_011099.1	1038986	1040627	R	chr2.cand.256 - PF00781 Diacylglycerol kinase catalytic domain (presumed), PF00609 Diacylglycerol kinase accessory domain (presumed); diacylglycerol kinase, putative	complement(join(1038986..1039066,1039096..1039191,1039250..1039348,1039440..1039679,1039741..1039881,1039915..1040038,1040072..1040144,1040184..1040300,1040329..1040467,1040562..1040627))	Theileria annulata	3861564
TA13370	CDS	TA13370	NC_011099.1	1041155	1042238	R	chr2.cand.255 - hypothetical protein, conserved, pf14_0682, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA13370 by TMHMM2.0 at aa 7-24; Signal peptide predicted for TA13370 by SignalP 2.0 HMM (Signal peptide probability 0.622, signal anchor probability 0.374) with cleavage site probability 0.415 between residues 29 and 30; uncharacterized protein	complement(join(1041155..1041337,1041366..1041479,1041509..1041684,1041731..1041986,1042034..1042081,1042122..1042238))	Theileria annulata	3861563
TA13365	CDS	TA13365	NC_011099.1	1042492	1043028	D	chr2.C.cand.262 - hypothetical protein; uncharacterized protein	join(1042492..1042500,1042537..1043028)	Theileria annulata	3861562
TA13360	CDS	TA13360	NC_011099.1	1043138	1043875	D	chr2.C.cand.263 - hypothetical protein, signal peptide; Signal peptide predicted for TA13360 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.701 between residues 17 and 18; uncharacterized protein	1043138..1043875	Theileria annulata	3861561
TA13355	CDS	TA13355	NC_011099.1	1043985	1045166	D	chr2.C.cand.264 - conserved hypothetical protein, jmjC domain, PF02246 Protein L b1 domain; uncharacterized protein	join(1043985..1044063,1044140..1044555,1044590..1044688,1044718..1044862,1044931..1045166)	Theileria annulata	3861560
TA13345	CDS	TA13345	NC_011099.1	1045229	1046038	R	chr2.cand.254 - hypothetical protein; uncharacterized protein	complement(join(1045229..1045849,1045910..1046038))	Theileria annulata	3861558
TA13340	CDS	TA13340	NC_011099.1	1046292	1048101	R	chr2.cand.253 - DNA polymerase delta small subunit; DNA polymerase delta small subunit, putative	complement(join(1046292..1046511,1046616..1046676,1046706..1046823,1046862..1046986,1047046..1047125,1047186..1047257,1047290..1047362,1047402..1047534,1047571..1047687,1047730..1047819,1047877..1048101))	Theileria annulata	3861557
TA13335	CDS	TA13335	NC_011099.1	1048198	1048774	R	chr2.cand.253 - hypothetical protein; 1 probable transmembrane helix predicted for TA13335 by TMHMM2.0 at aa 130-152; (SNARE-interacting) vesicle transport protein, putative	complement(join(1048198..1048353,1048398..1048485,1048518..1048653,1048690..1048774))	Theileria annulata	3861556
TA13330	CDS	TA13330	NC_011099.1	1049396	1051599	D	chr2.C.cand.265 - hypothetical protein; uncharacterized protein	join(1049396..1049590,1049632..1049742,1049812..1051599)	Theileria annulata	3861555
TA13325	CDS	TA13325	NC_011099.1	1051987	1056234	D	chr2.C.cand.266 - DNA topoisomerase ii; DNA topoisomerase II, putative	join(1051987..1053057,1053138..1053848,1053907..1056234)	Theileria annulata	3861554
TA13320	CDS	TA13320	NC_011099.1	1056328	1058881	D	all_bases.cand.1459 - fork-head domain protein; uncharacterized protein	join(1056328..1057642,1057673..1057790,1057867..1058881)	Theileria annulata	3861553
TA13315	CDS	TA13315	NC_011099.1	1059437	1060916	D	chr2.C.cand.269 - beta tubulin; tubulin beta chain, putative	join(1059437..1059532,1059693..1060916)	Theileria annulata	3861552
TA13310	CDS	TA13310	NC_011099.1	1061763	1062974	R	all_bases.C.cand.356 - cell differentiation protein; cell differentiation protein (RCD1 homologue), putative	complement(join(1061763..1061868,1061899..1062137,1062243..1062338,1062369..1062475,1062506..1062621,1062655..1062974))	Theileria annulata	3861551
TA13305	CDS	TA13305	NC_011099.1	1063297	1065348	R	chr2.cand.249 - protein kinase; uncharacterized protein	complement(join(1063297..1063997,1064066..1064296,1064331..1065348))	Theileria annulata	3861550
TA13300	CDS	TA13300	NC_011099.1	1066886	1067595	D	chr2.C.cand.270 - score = 17.25; uncharacterized protein	join(1066886..1067001,1067035..1067183,1067279..1067452,1067504..1067595)	Theileria annulata	3861549
TA13295	CDS	TA13295	NC_011099.1	1067659	1068859	D	chr2.C.cand.271 - hypothetical protein, conserved, mal4p2.40; uncharacterized protein	join(1067659..1067725,1067764..1068089,1068116..1068479,1068510..1068567,1068599..1068706,1068741..1068776,1068823..1068859)	Theileria annulata	3861548
TA13290	CDS	TA13290	NC_011099.1	1069544	1071807	D	all_bases.cand.1462 - ABC transporter; 5 probable transmembrane helices predicted for TA13290 by TMHMM2.0 at aa 136-158, 178-200, 265-287, 291-313 and 377-399; ABC transporter protein, putative	join(1069544..1071189,1071226..1071328,1071358..1071567,1071598..1071807)	Theileria annulata	3862262
TA13285	CDS	TA13285	NC_011099.1	1071922	1073458	R	all_bases.C.cand.353 - hypothetical protein, pf13_0274, DUF254 motif; uncharacterized protein	complement(join(1071922..1072089,1072166..1072547,1072601..1072672,1072707..1072766,1072810..1073039,1073069..1073265,1073298..1073332,1073406..1073458))	Theileria annulata	3862261
TA13280	CDS	TA13280	NC_011099.1	1074038	1077520	D	chr2.C.cand.273 - hypothetical protein, exonuclease domain; exonuclease, putative	join(1074038..1076455,1076518..1077038,1077068..1077166,1077196..1077520)	Theileria annulata	3862260
TA13275	CDS	TA13275	NC_011099.1	1077768	1079584	R	all_bases.C.cand.352 - hypothetical membrane protein; membrane protein, putative; 12 probable transmembrane helices predicted for TA13275 by TMHMM2.0 at aa 65-87, 102-124, 136-153, 158-180, 210-232, 242-264, 316-338, 353-375, 395-414, 424-446, 467-489 and 499-521; uncharacterized protein	complement(join(1077768..1078149,1078191..1078365,1078407..1078703,1078791..1079057,1079088..1079178,1079225..1079584))	Theileria annulata	3862259
TA13270	CDS	TA13270	NC_011099.1	1080828	1082161	R	all_bases.C.cand.351 - hypothetical protein, conserved, pfb0501C; uncharacterized protein	complement(join(1080828..1080886,1080918..1080991,1081021..1081143,1081173..1081303,1081339..1081505,1081544..1081623,1081653..1081872,1081912..1082161))	Theileria annulata	3862258
TA13265	CDS	TA13265	NC_011099.1	1082394	1083550	D	all_bases.cand.1465 - GTP-binding protein, GTP1_OBJ domain; GTP-binding protein, putative	join(1082394..1082791,1082821..1083550)	Theileria annulata	3862257
TA13260	CDS	TA13260	NC_011099.1	1083618	1084553	R	chr2.cand.243 - mitochondrial carrier protein; 4 probable transmembrane helices predicted for TA13260 by TMHMM2.0 at aa 20-37, 120-142, 214-236 and 272-294; oxoglutarate/malate translocator protein, putative	complement(1083618..1084553)	Theileria annulata	3862256
TA13255	CDS	TA13255	NC_011099.1	1084881	1087042	R	chr2.cand.242 - hypothetical protein; uncharacterized protein	complement(join(1084881..1085053,1085086..1087042))	Theileria annulata	3862255
TA13250	CDS	TA13250	NC_011099.1	1087476	1089238	R	all_bases.C.cand.348 - hypothetical protein, conserved pf13_0018, SM0667, LisH Lissencephaly type-1-like homology motif, WD40 domains; uncharacterized protein	complement(join(1087476..1088514,1088544..1088757,1088787..1089139,1089174..1089238))	Theileria annulata	3862254
TA13240	CDS	TA13240	NC_011099.1	1089506	1091851	R	chr2.cand.240 - hypothetical protein; uncharacterized protein	complement(1089506..1091851)	Theileria annulata	3862252
TA13235	CDS	TA13235	NC_011099.1	1092748	1094909	R	chr2.cand.239 - hypothetical protein; uncharacterized protein	complement(join(1092748..1092920,1092953..1094909))	Theileria annulata	3862251
TA13230	CDS	TA13230	NC_011099.1	1095343	1097102	R	all_bases.C.cand.345 - hypothetical protein, conserved pf13_0018, SM0667, LisH Lissencephaly type-1-like homology motif, WD40 domains; uncharacterized protein	complement(join(1095343..1096378,1096408..1096621,1096651..1097003,1097038..1097102))	Theileria annulata	3862250
TA13225	CDS	TA13225	NC_011099.1	1097202	1098778	D	chr2.C.cand.275 - hypothetical protein; uncharacterized protein	join(1097202..1097277,1097426..1097652,1097682..1097996,1098029..1098197,1098342..1098778)	Theileria annulata	3862249
TA13220	CDS	TA13220	NC_011099.1	1099057	1100619	D	all_bases.cand.1468 - hypothetical protein; uncharacterized protein	join(1099057..1099122,1099171..1099233,1099263..1099563,1099594..1099675,1099706..1099934,1099968..1100300,1100343..1100489,1100521..1100619)	Theileria annulata	3862248
TA13215	CDS	TA13215	NC_011099.1	1100860	1102106	D	all_bases.cand.1469 - conserved hypothetical protein, pfe1415W, transmembrane, zinc finger; 4 probable transmembrane helices predicted for TA13215 by TMHMM2.0 at aa 71-93, 113-135, 216-238 and 253-275; uncharacterized protein	join(1100860..1100959,1100999..1101636,1101667..1101913,1101946..1102106)	Theileria annulata	3862247
TA13210	CDS	TA13210	NC_011099.1	1102171	1102632	R	vacuolar ATP synthase subunit f; vacuolar ATP synthase subunit f, putative	complement(join(1102171..1102400,1102435..1102516,1102579..1102632))	Theileria annulata	3862246
TA13205	CDS	TA13205	NC_011099.1	1103356	1104306	R	chr2.cand.236 - hypothetical protein, conserved, pfl1080C, PF01902 Domain of unknown function DUF71; uncharacterized protein	complement(join(1103356..1103446,1103479..1103570,1103604..1103665,1103696..1103814,1103845..1103856,1103919..1104051,1104087..1104306))	Theileria annulata	3862245
TA13200	CDS	TA13200	NC_011099.1	1104487	1106178	R	all_bases.C.cand.342 - replication factor a-related protein; replication factor A-related protein, putative	complement(join(1104487..1104708,1104739..1104830,1104863..1104930,1104961..1105241,1105283..1105465,1105499..1105594,1105625..1105727,1105757..1105896,1105929..1106000,1106035..1106178))	Theileria annulata	3862244
TA13195	CDS	TA13195	NC_011099.1	1106550	1107331	D	uncharacterized protein	join(1106550..1106802,1106835..1107331)	Theileria annulata	3862243
TA13180	CDS	TA13180	NC_011099.1	1107608	1108908	D	(SSF, Peter Pan) family member protein, putative	join(1107608..1108153,1108188..1108537,1108611..1108908)	Theileria annulata	3862084
TA13175	CDS	TA13175	NC_011099.1	1109138	1109902	D	chr2.C.cand.281 - nucleoside phosphorylase; purine nucleoside phosphorylase, putative	1109138..1109902	Theileria annulata	3862083
TA13170	CDS	TA13170	NC_011099.1	1109947	1110717	R	chr2.cand.233 - nucleoside phosphorylase; purine nucleoside phosphorylase, putative	complement(1109947..1110717)	Theileria annulata	3862082
TA13165	CDS	TA13165	NC_011099.1	1110921	1111691	D	chr2.C.cand.282 - nucleoside phosphorylase, PF01048 Phosphorylase family; purine nucleoside phosphorylase, putative	1110921..1111691	Theileria annulata	3862081
TA13160	CDS	TA13160	NC_011099.1	1112600	1114912	D	chr2.C.cand.283 - hypothetical protein, conserved, pf10_01831; uncharacterized protein	1112600..1114912	Theileria annulata	3862080
TA13155	CDS	TA13155	NC_011099.1	1115278	1116815	D	chr2.C.cand.284 - PF00587 tRNA synthetase class II core domain (G, H, P, S and T); histidyl-trna synthetase, putative	join(1115278..1115688,1115750..1116036,1116066..1116129,1116196..1116304,1116337..1116412,1116450..1116621,1116684..1116815)	Theileria annulata	3862079
TA13150	CDS	TA13150	NC_011099.1	1116931	1117963	R	uncharacterized protein	complement(join(1116931..1117256,1117385..1117561,1117599..1117672,1117815..1117963))	Theileria annulata	3862078
TA13145	CDS	TA13145	NC_011099.1	1118133	1119252	R	chr2.cand.232 - hypothetical protein, conserved, PF00899 ThiF family; uncharacterized protein	complement(join(1118133..1118915,1118998..1119252))	Theileria annulata	3862077
TA13140	CDS	TA13140	NC_011099.1	1119518	1120698	R	chr2.cand.231 - hypothetical protein; uncharacterized protein	complement(join(1119518..1120003,1120036..1120698))	Theileria annulata	3862076
TA13135	CDS	TA13135	NC_011099.1	1121215	1123732	R	all_bases.C.cand.338 - DEAD box helicase; ATP-dependent RNA helicase, putative	complement(join(1121215..1121313,1121397..1121502,1121533..1121764,1121795..1121864,1121894..1121986,1122017..1122255,1122313..1122404,1122444..1123440,1123519..1123732))	Theileria annulata	3862075
TA13125	CDS	TA13125	NC_011099.1	1124216	1126796	D	chr2.C.cand.285 - ATP-dependent peptidase, PF00004 ATPase family associated with various cellular activities (AAA), PF01434 peptidase family M41; mitochondrial respiratory chain complexes assembly protein (AFG3 homologue), putative	join(1124216..1124980,1125033..1125245,1125318..1126796)	Theileria annulata	3862073
TA13120	CDS	TA13120	NC_011099.1	1127138	1127813	D	all_bases.cand.1476 - hypothetical protein, conserved, pf08_0079, PF01253 translation initiation factor SUI1; uncharacterized protein	join(1127138..1127498,1127585..1127688,1127718..1127813)	Theileria annulata	3862072
TA13115	CDS	TA13115	NC_011099.1	1127929	1128742	R	chr2.cand.229 - hypothetical protein; uncharacterized protein	complement(join(1127929..1128470,1128562..1128742))	Theileria annulata	3862071
TA13110	CDS	TA13110	NC_011099.1	1128983	1129369	D	chr2.C.cand.287 - hypothetical protein; uncharacterized protein	1128983..1129369	Theileria annulata	3862070
TA13105	CDS	TA13105	NC_011099.1	1129406	1131082	R	chr2.cand.228 - hypothetical protein; uncharacterized protein	complement(1129406..1131082)	Theileria annulata	3862069
TA13100	CDS	TA13100	NC_011099.1	1132322	1134112	D	all_bases.cand.1479 - signal recognition particle receptor alpha subunit; signal recognition particle receptor alpha subunit, putative	join(1132322..1132459,1132540..1132635,1132703..1134112)	Theileria annulata	3862068
TA13095	CDS	TA13095	NC_011099.1	1134199	1134709	R	chr2.cand.227 - nucleoside diphosphate kinase; nucleoside diphosphate kinase, putative	complement(join(1134199..1134380,1134442..1134709))	Theileria annulata	3862027
TA13090	CDS	TA13090	NC_011099.1	1135044	1136825	D	uncharacterized protein	1135044..1136825	Theileria annulata	3862026
TA13085	CDS	TA13085	NC_011099.1	1137059	1142611	D	uncharacterized protein	1137059..1142611	Theileria annulata	3862025
TA13080	CDS	TA13080	NC_011099.1	1142830	1145027	R	chr2.cand.226 - hypothetical protein, transmembrane domains; 2 probable transmembrane helices predicted for TA13080 by TMHMM2.0 at aa 124-146 and 153-175; uncharacterized protein	complement(join(1142830..1143836,1143979..1144335,1144463..1144761,1144798..1145027))	Theileria annulata	3862024
TA13075	CDS	TA13075	NC_011099.1	1145429	1146167	R	chr2.cand.225 - hypothetical membrane protein, signal peptide, transmembrane domains; membrane protein, putative; 4 probable transmembrane helices predicted for TA13075 by TMHMM2.0 at aa 21-43, 58-80, 85-107 and 134-156; Signal anchor predicted for TA13075 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.998) with cleavage site probability 0.001 between residues 46 and 47; uncharacterized protein	complement(join(1145429..1145761,1145868..1146167))	Theileria annulata	3862023
TA13070	CDS	TA13070	NC_011099.1	1146624	1147120	D	chr2.C.cand.293 - clathrin coat assembly protein PF01217 clathrin adaptor complex small chain; clathrin-coat assembly protein, putative	join(1146624..1146679,1146748..1147120)	Theileria annulata	3862022
TA13065	CDS	TA13065	NC_011099.1	1147441	1148076	R	chr2.cand.224 - hypothetical membrane protein; hypothetical membrane protein; 4 probable transmembrane helices predicted for TA13065 by TMHMM2.0 at aa 25-47, 60-79, 83-101 and 121-143; uncharacterized protein	complement(join(1147441..1147766,1147815..1148076))	Theileria annulata	3862021
TA13060	CDS	TA13060	NC_011099.1	1148262	1148615	R	chr2.cand.223 - hypothetical protein; uncharacterized protein	complement(1148262..1148615)	Theileria annulata	3862020
TA13055	CDS	TA13055	NC_011099.1	1148977	1151973	R	chr2.cand.222 - hypothetical protein, conserved, pf11_0433, TPR domain, DnaJ domain; uncharacterized protein	complement(join(1148977..1151645,1151688..1151973))	Theileria annulata	3862019
TA13050	CDS	TA13050	NC_011099.1	1152406	1154821	D	chr2.C.cand.296 - hypothetical protein, conserved; uncharacterized protein	join(1152406..1152420,1152453..1152559,1152589..1152728,1152834..1152928,1152959..1153013,1153044..1153360,1153617..1153666,1153779..1153931,1154024..1154109,1154182..1154238,1154270..1154578,1154715..1154821)	Theileria annulata	3862018
TA13045	CDS	TA13045	NC_011099.1	1155230	1157212	D	chr2.C.cand.297 - signal peptide, some similarity to carbonic anhydrase; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA13045 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.000) with cleavage site probability 0.417 between residues 22 and 23; GPI-Anchor Signal predicted for TA13045 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	join(1155230..1155464,1155497..1155705,1155742..1156216,1156281..1157212)	Theileria annulata	3862017
TA13040	CDS	TA13040	NC_011099.1	1157370	1160247	R	chr2.cand.221 - hypothetical protein; uncharacterized protein	complement(join(1157370..1157516,1157610..1157843,1157951..1158048,1158105..1158378,1158478..1158901,1158947..1160247))	Theileria annulata	3862016
TA13035	CDS	TA13035	NC_011099.1	1160585	1162666	D	chr2.C.cand.298 - pre-mrna splicing factor, WD40 domains; pre-mRNA splicing factor (PRP17 homologue), putative	1160585..1162666	Theileria annulata	3862015
TA13030	CDS	TA13030	NC_011099.1	1162715	1163614	D	chr2.C.cand.299 - hypothetical protein; uncharacterized protein	join(1162715..1163177,1163212..1163340,1163391..1163614)	Theileria annulata	3862014
TA13020	CDS	TA13020	NC_011099.1	1163815	1164540	D	chr2.C.cand.300 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative	1163815..1164540	Theileria annulata	3862012
TA13015	CDS	TA13015	NC_011099.1	1164641	1165564	R	chr2.cand.220 - hypothetical protein; uncharacterized protein	complement(1164641..1165564)	Theileria annulata	3862011
TA13010	CDS	TA13010	NC_011099.1	1165607	1168032	R	chr2.cand.219 - PF00612 IQ calmodulin-binding motif; uncharacterized protein	complement(join(1165607..1166983,1167082..1168032))	Theileria annulata	3862010
TA13005	CDS	TA13005	NC_011099.1	1168167	1171306	R	chr2.cand.219 - PF00612 IQ calmodulin-binding motif; uncharacterized protein	complement(join(1168167..1168619,1168754..1168813,1168846..1168938,1168968..1169095,1169124..1169183,1169235..1170147,1170234..1170414,1170444..1170604,1170766..1171120,1171155..1171260,1171291..1171306))	Theileria annulata	3862009
TA13000	CDS	TA13000	NC_011099.1	1171667	1173653	D	chr2.C.cand.301 - hypothetical protein, conserved, pf13_0190, three TPR domains; uncharacterized protein	join(1171667..1171828,1171919..1172083,1172148..1172312,1172369..1172477,1172512..1172682,1172712..1172806,1172886..1172928,1172981..1173093,1173184..1173418,1173463..1173653)	Theileria annulata	3862008
TA12995	CDS	TA12995	NC_011099.1	1173968	1175815	D	chr2.C.cand.302 - DNA binding protein, PF00249 Myb-like DNA-binding domain; uncharacterized protein	1173968..1175815	Theileria annulata	3862488
TA12990	CDS	TA12990	NC_011099.1	1175947	1176261	R	chr2.cand.217 - hypothetical protein; uncharacterized protein	complement(1175947..1176261)	Theileria annulata	3862487
TA12985	CDS	TA12985	NC_011099.1	1176475	1177905	R	all_bases.C.cand.326 - hypothetical protein; uncharacterized protein	complement(join(1176475..1176630,1176662..1176844,1176928..1177074,1177135..1177905))	Theileria annulata	3862486
TA12980	CDS	TA12980	NC_011099.1	1178098	1181057	R	chr2.cand.215 - PF00169 PH domain pleckstrin homology PF01237 oxysterol-binding protein; oxysterol binding protein-related protein 1, putative	complement(join(1178098..1178166,1178207..1178300,1178331..1178641,1178672..1178846,1178880..1179073,1179125..1179229,1179278..1179543,1179644..1180753,1180842..1180945,1180978..1181057))	Theileria annulata	3862485
TA12975	CDS	TA12975	NC_011099.1	1181537	1181974	R	chr2.cand.214 - hypothetical protein; uncharacterized protein	complement(1181537..1181974)	Theileria annulata	3862484
TA12965	CDS	TA12965	NC_011099.1	1183027	1185625	D	all_bases.cand.1488 - calcium-dependent protein kinase; calcium-dependent protein kinase, putative	join(1183027..1184282,1184376..1185292,1185372..1185483,1185514..1185625)	Theileria annulata	3862482
TA12960	CDS	TA12960	NC_011099.1	1185789	1186883	R	chr2.cand.212 - hypothetical protein, PF00627 UBA/TS-N domain; ubiquitin-related protein, putative; uncharacterized protein	complement(1185789..1186883)	Theileria annulata	3862481
TA12955	CDS	TA12955	NC_011099.1	1187342	1188972	R	hypothetical protein, transmembrane; 3 probable transmembrane helices predicted for TA12955 by TMHMM2.0 at aa 7-29, 329-351 and 384-406; uncharacterized protein	complement(join(1187342..1187503,1187545..1187667,1187702..1187855,1187925..1188098,1188158..1188362,1188429..1188972))	Theileria annulata	3862480
TA12950	CDS	TA12950	NC_011099.1	1189325	1189759	D	all_bases.cand.1489 - cytochrome c; cytochrome C, putative	join(1189325..1189427,1189481..1189576,1189611..1189759)	Theileria annulata	3862479
TA12945	CDS	TA12945	NC_011099.1	1190258	1191345	D	all_bases.cand.1490 - hypothetical protein, conserved, pf14_0034, signal peptide, TLC TRAM, LAG1 and CLN8 homology domains.; 5 probable transmembrane helices predicted for TA12945 by TMHMM2.0 at aa 25-42, 142-164, 184-206, 226-248 and 269-291; uncharacterized protein	join(1190258..1190493,1190546..1190665,1190697..1190934,1190965..1191237,1191268..1191345)	Theileria annulata	3862478
TA12940	CDS	TA12940	NC_011099.1	1191397	1192197	R	all_bases.C.cand.321 - hypothetical protein; uncharacterized protein	complement(join(1191397..1191565,1191694..1191838,1191867..1192197))	Theileria annulata	3862477
TA12935	CDS	TA12935	NC_011099.1	1192323	1193867	R	all_bases.C.cand.321 - translocation protein sec62, putative; 2 probable transmembrane helices predicted for TA12935 by TMHMM2.0 at aa 177-199 and 224-246; translocation protein (SEC62 homologue), putative	complement(join(1192323..1192436,1192469..1192551,1192583..1192684,1192714..1192821,1192852..1193047,1193110..1193159,1193185..1193328,1193362..1193398,1193431..1193538,1193569..1193652,1193714..1193797,1193853..1193867))	Theileria annulata	3862476
TA12930	CDS	TA12930	NC_011099.1	1194182	1194577	D	all_bases.cand.1491 - ribosomal protein l20; ribosomal protein L20, putative	join(1194182..1194328,1194359..1194577)	Theileria annulata	3862475
TA12925	CDS	TA12925	NC_011099.1	1194705	1199396	R	12 probable transmembrane helices predicted for TA12925 by TMHMM2.0 at aa 154-176, 189-207, 212-234, 296-318, 333-355, 407-429, 449-471, 856-878, 923-945, 1016-1038, 1108-1130 and 1137-1159; (subtelomeric) ABC-transporter family member, putative	complement(1194705..1199396)	Theileria annulata	3862474
TA12920	CDS	TA12920	NC_011099.1	1200036	1204619	R	chr2.cand.206 - ABC transporter; 11 probable transmembrane helices predicted for TA12920 by TMHMM2.0 at aa 139-161, 176-198, 283-305, 320-342, 394-416, 436-458, 837-859, 902-924, 972-994, 999-1021 and 1084-1106; (subtelomeric) ABC-transporter protein family member, putative	complement(1200036..1204619)	Theileria annulata	3862473
TA12905	CDS	TA12905	NC_011099.1	1205221	1206960	D	all_bases.cand.1492 - splicing factor 3 subunit 1, PF01805 Surp module (SWAP domain); splicing factor 3 subunit 1, putative	join(1205221..1205446,1205488..1205671,1205727..1206102,1206136..1206243,1206275..1206466,1206497..1206651,1206683..1206744,1206774..1206841,1206871..1206960)	Theileria annulata	3862470
TA12900	CDS	TA12900	NC_011099.1	1206991	1211610	R	chr2.cand.205 - score = 60.15; 12 probable transmembrane helices predicted for TA12900 by TMHMM2.0 at aa 152-174, 181-200, 210-232, 294-316, 331-353, 405-427, 447-469, 847-869, 910-932, 982-1004, 1009-1031 and 1092-1114; (subtelomeric) ABC-transporter protein family member, putative	complement(1206991..1211610)	Theileria annulata	3861792
TA12895	CDS	TA12895	NC_011099.1	1212245	1215386	R	all_bases.C.cand.316 - hypothetical protein; uncharacterized protein	complement(join(1212245..1212320,1212351..1212411,1212442..1212531,1212561..1212642,1212671..1212803,1212833..1213089,1213119..1213242,1213272..1213591,1213621..1213663,1213698..1214203,1214233..1214514,1214545..1215326,1215362..1215386))	Theileria annulata	3861791
TA12890	CDS	TA12890	NC_011099.1	1215697	1219045	D	chr2.C.cand.308 - hypothetical protein; uncharacterized protein	join(1215697..1216558,1216590..1216979,1217048..1217314,1217379..1219045)	Theileria annulata	3861790
TA12885	CDS	TA12885	NC_011099.1	1219112	1222848	R	chr2.cand.202 - WD40 repeat protein; uncharacterized protein	complement(join(1219112..1219168,1219240..1222848))	Theileria annulata	3861789
TA12880	CDS	TA12880	NC_011099.1	1223106	1224097	R	chr2.cand.201 - hypothetical protein, conserved, pf14_0717; uncharacterized protein	complement(join(1223106..1223300,1223342..1223823,1223857..1223991,1224031..1224097))	Theileria annulata	3861788
TA12875	CDS	TA12875	NC_011099.1	1224860	1225445	D	chr2.C.cand.309 - hypothetical protein; uncharacterized protein	join(1224860..1224976,1225010..1225067,1225131..1225215,1225265..1225445)	Theileria annulata	3861787
TA12870	CDS	TA12870	NC_011099.1	1225553	1226169	D	all_bases.cand.1494 - PF01509 TruB family pseudouridylate synthase (N terminal domain); RNA modification (pseudouridylation) protein TruB family member, putative	join(1225553..1225740,1225772..1225821,1225852..1225908,1225949..1226169)	Theileria annulata	3861786
TA12865	CDS	TA12865	NC_011099.1	1226621	1229818	R	chr2.cand.200 - 2 x EF hand domains and protein phosphatase-2A (PP2A) domains; calcium-dependent protein phosphatase, putative	complement(1226621..1229818)	Theileria annulata	3861785
TA12860	CDS	TA12860	NC_011099.1	1230332	1231483	R	all_bases.C.cand.312 - camp-dependent protein kinase catalytic subunit; cAMP-dependent protein kinase catalytic subunit, putative	complement(join(1230332..1230427,1230459..1230618,1230647..1231289,1231321..1231483))	Theileria annulata	3861784
TA12855	CDS	TA12855	NC_011099.1	1231875	1232526	R	all_bases.C.cand.311 - small nuclear ribonucleoprotein, PF00076 RNA recognition motif; U1/2 small nuclear ribonucleoprotein, putative	complement(join(1231875..1232304,1232336..1232526))	Theileria annulata	3861783
TA12850	CDS	TA12850	NC_011099.1	1232592	1232810	R	conserved hypothetical protein; 2 probable transmembrane helices predicted for TA12850 by TMHMM2.0 at aa 10-32 and 53-71; Signal peptide predicted for TA12850 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.019) with cleavage site probability 0.363 between residues 21 and 22; GPI-Anchor Signal predicted for TA12850 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(1232592..1232810)	Theileria annulata	3861782
TA12845	CDS	TA12845	NC_011099.1	1233211	1234948	D	all_bases.cand.1495 - eukaryotic translation initiation factor 3, subunit 6, putative; eukaryotic translation initiation factor 3, subunit 6, putative	join(1233211..1234224,1234254..1234367,1234399..1234508,1234540..1234619,1234653..1234948)	Theileria annulata	3861781
TA12840	CDS	TA12840	NC_011099.1	1235905	1237040	D	all_bases.cand.1496 - hypothetical protein; uncharacterized protein	join(1235905..1236751,1236829..1236872,1236906..1237040)	Theileria annulata	3861780
TA12835	CDS	TA12835	NC_011099.1	1237402	1238517	D	all_bases.cand.1496 - splicing factor 3b subunit 4; splicing factor 3b subunit 4, putative	join(1237402..1237468,1237565..1237675,1237705..1237832,1237862..1237960,1237990..1238140,1238171..1238314,1238345..1238517)	Theileria annulata	3861779
TA12830	CDS	TA12830	NC_011099.1	1238543	1239588	R	all_bases.C.cand.310 - uracil-DNA glycosylase, putative; uracil-DNA glycosylase, putative	complement(join(1238543..1238622,1238651..1238749,1238783..1238858,1238888..1239067,1239101..1239164,1239193..1239324,1239359..1239588))	Theileria annulata	3861778
TA12825	CDS	TA12825	NC_011099.1	1239762	1240306	D	all_bases.cand.1497 - hypothetical protein, conserved, pf14_0193; uncharacterized protein	join(1239762..1240163,1240193..1240306)	Theileria annulata	3861777
TA12820	CDS	TA12820	NC_011099.1	1240394	1240795	R	chr2.cand.196 - hypothetical protein, conserved, pfe1395C; uncharacterized protein	complement(1240394..1240795)	Theileria annulata	3861776
TA12815	CDS	TA12815	NC_011099.1	1241395	1241789	D	chr2.C.cand.315 - 60S acidic ribosomal protein P2; 60S acidic ribosomal protein p2, putative	join(1241395..1241559,1241590..1241680,1241713..1241789)	Theileria annulata	3861775
TA12810	CDS	TA12810	NC_011099.1	1241977	1243038	D	all_bases.cand.1499 - hypothetical protein, conserved; uncharacterized protein	join(1241977..1242046,1242110..1242230,1242260..1242402,1242432..1242490,1242522..1242583,1242621..1242714,1242745..1242809,1242846..1243038)	Theileria annulata	3861774
TA12800	CDS	TA12800	NC_011099.1	1243239	1244395	R	chr2.cand.195 - PF00782 Dual specificity phosphatase, catalytic domain; dual-specificity phosphatase, putative	complement(join(1243239..1243848,1243890..1243940,1243974..1244395))	Theileria annulata	3862144
TA12795	CDS	TA12795	NC_011099.1	1244701	1246085	D	all_bases.cand.1501 - score = 54.80; uncharacterized protein	join(1244701..1245159,1245205..1245338,1245375..1245475,1245508..1245586,1245617..1246085)	Theileria annulata	3862143
TA12790	CDS	TA12790	NC_011099.1	1246148	1247111	D	50s ribosomal protein l9, signal peptide, apicoplast target sequence; 1 probable transmembrane helix predicted for TA12790 by TMHMM2.0 at aa 12-34; 50s ribosomal protein L9, putative	join(1246148..1246200,1246305..1246597,1246648..1247111)	Theileria annulata	3862142
TA12785	CDS	TA12785	NC_011099.1	1247147	1247824	D	uncharacterized protein	1247147..1247824	Theileria annulata	3862141
TA12780	CDS	TA12780	NC_011099.1	1248045	1249206	R	chr2.cand.194 - splicing factor PWI domain; splicing factor, putative	complement(join(1248045..1248883,1248936..1249206))	Theileria annulata	3862140
TA12775	CDS	TA12775	NC_011099.1	1249652	1250501	D	chr2.C.cand.319 - rat brain protein-like; uncharacterized protein	join(1249652..1250246,1250281..1250501)	Theileria annulata	3862139
TA12770	CDS	TA12770	NC_011099.1	1250589	1250945	D	chr2.C.cand.320 - hypothetical protein; uncharacterized protein	1250589..1250945	Theileria annulata	3862138
TA12765	CDS	TA12765	NC_011099.1	1251061	1252486	R	chr2.cand.192 - PF01866 putative diphthamide synthesis protein; diphthamide synthesis protein, putative	complement(join(1251061..1251158,1251190..1251352,1251390..1251635,1251667..1252185,1252226..1252486))	Theileria annulata	3862137
TA12760	CDS	TA12760	NC_011099.1	1253016	1255536	D	chr2.C.cand.321 - hypothetical protein; uncharacterized protein	join(1253016..1253346,1253402..1255033,1255065..1255322,1255355..1255434,1255465..1255536)	Theileria annulata	3862136
TA12755	CDS	TA12755	NC_011099.1	1256025	1256524	D	all_bases.cand.1505 - small nuclear ribonucleoprotein associated protein b; small nuclear ribonucleoprotein associated protein b, putative	join(1256025..1256198,1256231..1256524)	Theileria annulata	3862135
TA12745	CDS	TA12745	NC_011099.1	1256651	1259962	R	all_bases.C.cand.305 - lon protease homolog 2; Lon protease homolog 2, mitochondrial precursor, putative	complement(1256651..1259962)	Theileria annulata	3862133
TA12740	CDS	TA12740	NC_011099.1	1260360	1263108	R	all_bases.C.cand.304 - almost identical to Spm1; Spm1 (nucleoporin) protein	complement(join(1260360..1260973,1261009..1261053,1261086..1263108))	Theileria annulata	3862132
TA12735	CDS	TA12735	NC_011099.1	1263397	1263855	D	all_bases.cand.1507 - RNA polymerase 16kd subunit; RNA polymerase 16kd subunit, RPB4-like, putative	join(1263397..1263539,1263571..1263648,1263684..1263855)	Theileria annulata	3862131
TA12730	CDS	TA12730	NC_011099.1	1264615	1265636	R	all_bases.C.cand.303 - hypothetical protein; uncharacterized protein	complement(join(1264615..1264656,1264682..1264775,1264806..1264855,1264942..1265097,1265160..1265262,1265293..1265456,1265490..1265636))	Theileria annulata	3862130
TA12725	CDS	TA12725	NC_011099.1	1265796	1266474	D	all_bases.cand.1508 - hypothetical protein; uncharacterized protein	join(1265796..1265858,1265897..1266082,1266113..1266227,1266266..1266474)	Theileria annulata	3862129
TA12720	CDS	TA12720	NC_011099.1	1266560	1266981	R	signal peptide, apicoplast target sequence, DnaJ domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA12720 by TMHMM2.0 at aa 4-21; Signal peptide predicted for TA12720 by SignalP 2.0 HMM (Signal peptide probability 0.917, signal anchor probability 0.000) with cleavage site probability 0.845 between residues 16 and 17; chaperone, putative	complement(join(1266560..1266615,1266648..1266721,1266755..1266981))	Theileria annulata	3862128
TA12715	CDS	TA12715	NC_011099.1	1267221	1268817	D	all_bases.cand.1510 - peptide release factor erf1, pfam erf1-3; eukaryotic peptide release factor (ERF), putative	join(1267221..1267354,1267391..1267469,1267500..1267574,1267605..1267661,1267693..1267770,1267801..1267926,1267957..1268058,1268087..1268127,1268160..1268225,1268254..1268332,1268362..1268637,1268680..1268817)	Theileria annulata	3862127
TA12710	CDS	TA12710	NC_011099.1	1268932	1270087	R	PF02230 Phospholipase/Carboxylesterase; hydrolase, putative	complement(join(1268932..1269165,1269201..1269421,1269451..1269552,1269584..1269793,1269841..1269988,1270031..1270087))	Theileria annulata	3862126
TA12705	CDS	TA12705	NC_011099.1	1270525	1271875	R	all_bases.C.cand.301 - signal peptide, Pfam thioredoxin; 1 probable transmembrane helix predicted for TA12705 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA12705 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.006) with cleavage site probability 0.950 between residues 25 and 26; uncharacterized protein	complement(join(1270525..1270884,1270936..1271235,1271272..1271457,1271486..1271875))	Theileria annulata	3862282
TA12700	CDS	TA12700	NC_011099.1	1272350	1273767	R	all_bases.C.cand.300 - PF01331 mRNA capping enzyme, catalytic domain; mRNA capping enzyme, putative	complement(join(1272350..1272719,1272753..1272826,1272859..1272892,1272916..1273349,1273383..1273587,1273619..1273767))	Theileria annulata	3862281
TA12685	CDS	TA12685	NC_011099.1	1274052	1277938	D	all_bases.cand.1512 - PF03109 ABC1 family; ABC1-related protein, putative	join(1274052..1277571,1277629..1277801,1277834..1277938)	Theileria annulata	3862278
TA12680	CDS	TA12680	NC_011099.1	1278072	1279059	R	chr2.cand.185 - serine/threonine protein phosphatase pp1-gamma catalytic subunit; serine/threonine protein phosphatase 1, PP1-gamma catalytic subunit, putative	complement(join(1278072..1278107,1278159..1278622,1278654..1279059))	Theileria annulata	3862277
TA12675	CDS	TA12675	NC_011099.1	1280036	1281396	R	chr2.cand.184 - Ring finger protein, PF00097 Zinc finger, C3HC4 type, PF00098 Zinc knuckle; uncharacterized protein	complement(join(1280036..1280133,1280164..1280565,1280604..1281396))	Theileria annulata	3862276
TA12670	CDS	TA12670	NC_011099.1	1281756	1282625	R	chr2.cand.183 - hypothetical protein; uncharacterized protein	complement(join(1281756..1281971,1282011..1282625))	Theileria annulata	3862275
TA12665	CDS	TA12665	NC_011099.1	1283262	1285235	D	chr2.C.cand.327 - signal, PF00380 Ribosomal protein S9/S16; 1 probable transmembrane helix predicted for TA12665 by TMHMM2.0 at aa 12-34; Signal peptide predicted for TA12665 by SignalP 2.0 HMM (Signal peptide probability 0.749, signal anchor probability 0.182) with cleavage site probability 0.582 between residues 28 and 29; ribosomal protein S9/S16, putative	join(1283262..1283395,1283439..1283482,1283515..1285235)	Theileria annulata	3862274
TA12660	CDS	TA12660	NC_011099.1	1285342	1286559	D	chr2.C.cand.328 - hypothetical protein; uncharacterized protein	join(1285342..1285471,1285511..1285662,1285693..1286559)	Theileria annulata	3862273
TA12655	CDS	TA12655	NC_011099.1	1286643	1287354	D	chr2.C.cand.329 - hypothetical protein; uncharacterized protein	join(1286643..1286750,1286792..1286944,1287028..1287091,1287139..1287234,1287269..1287354)	Theileria annulata	3862272
TA12650	CDS	TA12650	NC_011099.1	1287424	1287831	R	hypothetical protein, conserved, mal13p1.282; uncharacterized protein	complement(join(1287424..1287567,1287607..1287831))	Theileria annulata	3862271
TA12645	CDS	TA12645	NC_011099.1	1287968	1289866	D	chr2.C.cand.330 - ubiquitin carboxy terminal hydrolase; ubiquitin carboxy-terminal hydrolase, putative	1287968..1289866	Theileria annulata	3862270
TA12640	CDS	TA12640	NC_011099.1	1290033	1290484	D	chr2.C.cand.331 - Arm-1 protein; adhesion regulation modulator (ARM) protein, putative	join(1290033..1290140,1290185..1290241,1290275..1290484)	Theileria annulata	3862269
TA12630	CDS	TA12630	NC_011099.1	1290497	1291737	R	all_bases.C.cand.296 - signal peptide, apicoplast target sequence, DnaJ domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 5 probable transmembrane helices predicted for TA12630 by TMHMM2.0 at aa 30-47, 137-159, 163-185, 197-219 and 333-350; Signal anchor predicted for TA12630 by SignalP 2.0 HMM (Signal peptide probability 0.014, signal anchor probability 0.973) with cleavage site probability 0.005 between residues 17 and 18; molecular chaperone, putative	complement(join(1290497..1290577,1290608..1290961,1290993..1291234,1291265..1291391,1291423..1291577,1291610..1291642,1291674..1291737))	Theileria annulata	3862267
TA12625	CDS	TA12625	NC_011099.1	1291914	1292483	D	chr2.C.cand.332 - hypothetical protein, possible transmembrane; 2 probable transmembrane helices predicted for TA12625 by TMHMM2.0 at aa 28-50 and 78-100; uncharacterized protein	1291914..1292483	Theileria annulata	3862266
TA12620	CDS	TA12620	NC_011099.1	1292545	1296083	R	all_bases.C.cand.295 - PF03054 tRNA methyl transferase, signal peptide, apicoplast target sequence; 1 probable transmembrane helix predicted for TA12620 by TMHMM2.0 at aa 5-27; trna methyl transferase, putative	complement(join(1292545..1293632,1293694..1293733,1293806..1293919,1293996..1294502,1294534..1294855,1294884..1295013,1295043..1295161,1295191..1296083))	Theileria annulata	3862265
TA12615	CDS	TA12615	NC_011099.1	1296192	1296681	R	chr2.cand.180; autophagy protein 8I, putative	complement(join(1296192..1296426,1296464..1296569,1296642..1296681))	Theileria annulata	3862264
TA12610	CDS	TA12610	NC_011099.1	1297388	1300010	D	chr2.C.cand.333 - WD40 protein; uncharacterized protein	join(1297388..1297537,1297580..1297735,1297767..1300010)	Theileria annulata	3862263
TA12605	CDS	TA12605	NC_011099.1	1300019	1300911	R	all_bases.C.cand.293 - hypothetical protein; uncharacterized protein	complement(join(1300019..1300098,1300167..1300296,1300325..1300544,1300577..1300911))	Theileria annulata	3861716
TA12600	CDS	TA12600	NC_011099.1	1301055	1301614	D	all_bases.cand.1520 - hypothetical protein, some conservation; uncharacterized protein	join(1301055..1301205,1301239..1301358,1301388..1301566,1301597..1301614)	Theileria annulata	3861715
TA12595	CDS	TA12595	NC_011099.1	1301633	1302980	R	all_bases.C.cand.292 - hypothetical protein, conserved, pf10_0204; uncharacterized protein	complement(join(1301633..1301657,1301692..1301912,1301942..1302112,1302146..1302345,1302375..1302652,1302691..1302980))	Theileria annulata	3861714
TA12590	CDS	TA12590	NC_011099.1	1303261	1304818	R	all_bases.C.cand.291 - apurinic/apyrimidinic endonuclease Apn1; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA12590 by SignalP 2.0 HMM (Signal peptide probability 0.937, signal anchor probability 0.027) with cleavage site probability 0.654 between residues 21 and 22; apurinic/apyrimidinic endonuclease Apn1-like, putative	complement(join(1303261..1303556,1303587..1303626,1303660..1303797,1303828..1303877,1303908..1304000,1304030..1304135,1304166..1304221,1304254..1304388,1304418..1304610,1304663..1304818))	Theileria annulata	3861713
TA12585	CDS	TA12585	NC_011099.1	1304896	1305749	R	all_bases.C.cand.291 - translation initiation factor 6; eukaryotic translation initiation factor 6, putative	complement(join(1304896..1305059,1305091..1305483,1305526..1305708,1305740..1305749))	Theileria annulata	3861712
TA12575	CDS	TA12575	NC_011099.1	1305952	1307418	D	chr2.C.cand.335 - DEAD box RNA helicase; ATP-dependent RNA helicase, putative	join(1305952..1306887,1306921..1307418)	Theileria annulata	3861710
TA12570	CDS	TA12570	NC_011099.1	1307563	1311040	D	all_bases.cand.1521 - Ubiquitin-activating enzyme (E1 enzyme), PF00899 ThiF family, PF02134 Repeat in ubiquitin-activating (UBA) protein; ubiquitin-activating enzyme, putative	join(1307563..1308838,1308870..1309475,1309521..1311040)	Theileria annulata	3861709
TA12565	CDS	TA12565	NC_011099.1	1311097	1311738	R	chr2.cand.174 - cargo receptor, signal peptide, PF01105 emp24/gp25L/p24 family; 1 probable transmembrane helix predicted for TA12565 by TMHMM2.0 at aa 181-203; cargo protein (transmembrane protein tmp21 homologue), putative	complement(1311097..1311738)	Theileria annulata	3861708
TA12560	CDS	TA12560	NC_011099.1	1312080	1314311	D	chr2.C.cand.337 - hypothetical protein; uncharacterized protein	join(1312080..1313778,1313842..1314311)	Theileria annulata	3861707
TA12555	CDS	TA12555	NC_011099.1	1314405	1315580	D	chr2.C.cand.338 - hypothetical protein, bromodomain; histone acetyltransferase, GCN5-like, putative	1314405..1315580	Theileria annulata	3861706
TA12550	CDS	TA12550	NC_011099.1	1315718	1321073	R	all_bases.C.cand.289 - hypothetical protein, conserved, pf14_0723, signal peptide; uncharacterized protein	complement(join(1315718..1315852,1315885..1316609,1316641..1316740,1316851..1317097,1317129..1317722,1317819..1319799,1319831..1320133,1320223..1320310,1320346..1320608,1320647..1320725,1320754..1320827,1320857..1321073))	Theileria annulata	3861705
TA12545	CDS	TA12545	NC_011099.1	1321185	1322785	R	chr2.cand.169 - partially conserved hypothetical protein; uncharacterized protein	complement(join(1321185..1321248,1321280..1321334,1321366..1321427,1321459..1321571,1321602..1321667,1321695..1321811,1321841..1321921,1321953..1322099,1322130..1322210,1322252..1322326,1322356..1322499,1322536..1322567,1322601..1322634,1322672..1322785))	Theileria annulata	3861704
TA12540	CDS	TA12540	NC_011099.1	1322865	1323831	D	chr2.C.cand.339 - syntaxin family, Syntaxin motif; 1 probable transmembrane helix predicted for TA12540 by TMHMM2.0 at aa 264-283; syntaxin 5, putative	join(1322865..1323415,1323468..1323658,1323688..1323749,1323778..1323831)	Theileria annulata	3861703
TA12535	CDS	TA12535	NC_011099.1	1323975	1324456	R	chr2.cand.168 - 60S ribosomal protein l23; 60S ribosomal protein L23, putative	complement(join(1323975..1324268,1324298..1324413,1324447..1324456))	Theileria annulata	3861702
TA12530	CDS	TA12530	NC_011099.1	1325001	1327898	D	possible signal peptide present; all_bases.cand.1525 - PF00749 tRNA synthetases class I (E and Q), catalytic domain; 2 probable transmembrane helices predicted for TA12530 by TMHMM2.0 at aa 588-610 and 630-652; glutaminyl-trna synthetase, putative	join(1325001..1325923,1325953..1326135,1326166..1326298,1326330..1326458,1326544..1326937,1327199..1327393,1327423..1327647,1327678..1327898)	Theileria annulata	3861701
TA12520	CDS	TA12520	NC_011099.1	1328016	1329776	R	chr2.cand.167 - hypothetical protein; uncharacterized protein	complement(join(1328016..1329461,1329501..1329776))	Theileria annulata	3861699
TA12515	CDS	TA12515	NC_011099.1	1329999	1331772	R	S/T protein kinase; cyclin-dependent protein kinase, PHO85 homologue, putative	complement(join(1329999..1330373,1330405..1330538,1330651..1330841,1330898..1331772))	Theileria annulata	3861698
TA12510	CDS	TA12510	NC_011099.1	1332060	1332994	D	chr2.C.cand.342 - thymidylate kinase; thymidylate kinase, putative	join(1332060..1332115,1332151..1332233,1332277..1332388,1332428..1332660,1332695..1332804,1332838..1332873,1332980..1332994)	Theileria annulata	3862333
TA12505	CDS	TA12505	NC_011099.1	1333219	1335255	D	chr2.C.cand.343 - hypothetical protein, some similarity to S. pombe nucleoporin; uncharacterized protein	1333219..1335255	Theileria annulata	3862332
TA12500	CDS	TA12500	NC_011099.1	1336173	1336646	R	chr2.cand.161 - 60S ribosomal protein l27a; 60S ribosomal protein L27a, putative	complement(join(1336173..1336451,1336482..1336646))	Theileria annulata	3862331
TA12495	CDS	TA12495	NC_011099.1	1336987	1339089	R	2 probable transmembrane helices predicted for TA12495 by TMHMM2.0; RNA helicase, putative	complement(join(1336987..1337096,1337115..1337142,1337185..1337297,1337337..1337881,1337957..1338317,1338347..1338677,1338715..1339089))	Theileria annulata	3862330
TA12490	CDS	TA12490	NC_011099.1	1339151	1339740	D	chr2.C.cand.344 - hypothetical protein; uncharacterized protein	join(1339151..1339344,1339377..1339494,1339534..1339740)	Theileria annulata	3862329
TA12485	CDS	TA12485	NC_011099.1	1339876	1341855	R	all_bases.C.cand.282 - hypothetical protein, possible signal peptide; uncharacterized protein	complement(join(1339876..1340014,1340048..1340148,1340178..1340264,1340328..1340390,1340422..1340535,1340566..1340685,1340751..1340859,1340891..1341855))	Theileria annulata	3862328
TA12480	CDS	TA12480	NC_011099.1	1342442	1344520	D	chr2.C.cand.345 - hypothetical protein, partly conserved; uncharacterized protein	1342442..1344520	Theileria annulata	3862327
TA12475	CDS	TA12475	NC_011099.1	1344663	1345187	D	chr2.C.cand.346 - conserved hypothetical protein, some similarity to human mbp-1 interacting protein-2a; endoplasmic reticulum transport protein, putative	1344663..1345187	Theileria annulata	3862326
TA12470	CDS	TA12470	NC_011099.1	1345321	1347303	R	chr2.cand.156 - PF01909 Nucleotidyltransferase domain; topoisomerase-related nucleotidyltransferase, putative	complement(join(1345321..1345701,1345740..1345844,1345888..1345969,1346000..1346250,1346280..1346347,1346380..1346559,1346596..1346665,1346759..1346913,1346966..1347086,1347118..1347303))	Theileria annulata	3862325
TA12465	CDS	TA12465	NC_011099.1	1347419	1348705	R	chr2.cand.156 - chaperonin, 2 x cpn10, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA12465 by SignalP 2.0 HMM (Signal peptide probability 0.909, signal anchor probability 0.000) with cleavage site probability 0.843 between residues 16 and 17; chaperonin, putative	complement(join(1347419..1347450,1347491..1347693,1347734..1347858,1347892..1347961,1348095..1348127,1348158..1348222,1348310..1348455,1348513..1348705))	Theileria annulata	3862324
TA12460	CDS	TA12460	NC_011099.1	1348814	1352715	D	chr2.C.cand.347 - isoleucyl-trna synthetase; isoleucyl-tRNA synthetase, putative	join(1348814..1349006,1349048..1349229,1349337..1349503,1349554..1349823,1349903..1350319,1350388..1350806,1350883..1351642,1351734..1352715)	Theileria annulata	3862323
TA12455	CDS	TA12455	NC_011099.1	1352848	1354824	R	chr2.cand.155 - hypothetical protein; uncharacterized protein	complement(join(1352848..1354632,1354669..1354824))	Theileria annulata	3862322
TA12450	CDS	TA12450	NC_011099.1	1355335	1356378	R	chr2.cand.154 - hypothetical protein; uncharacterized protein	complement(join(1355335..1355594,1355634..1356378))	Theileria annulata	3862321
TA12445	CDS	TA12445	NC_011099.1	1358536	1359639	D	chr2.C.cand.348 - PF01398 Mov34/MPN/PAD-1 family; eukaryotic translation initiation factor 3, putative	1358536..1359639	Theileria annulata	3862320
TA12440	CDS	TA12440	NC_011099.1	1360106	1362496	D	chr2.C.cand.349 - hypothetical protein; uncharacterized protein	1360106..1362496	Theileria annulata	3862319
TA12435	CDS	TA12435	NC_011099.1	1362865	1363224	D	chr2.C.cand.350 - 60S ribosomal protein l30; 60S ribosomal protein L30, putative	join(1362865..1362988,1363022..1363224)	Theileria annulata	3862318
TA12430	CDS	TA12430	NC_011099.1	1363547	1366366	D	chr2.C.cand.351 - beta adaptin PF01602 Adaptin N terminal region; beta adaptin, putative	join(1363547..1363851,1363968..1364107,1364187..1366366)	Theileria annulata	3862317
TA12425	CDS	TA12425	NC_011099.1	1366491	1367225	R	chr2.cand.152 - initiation factor 3 subunit 11; eukaryotic translation initiation factor 3 subunit II, putative	complement(1366491..1367225)	Theileria annulata	3862316
TA12415	CDS	TA12415	NC_011099.1	1367457	1369840	D	chr2.C.cand.352 - conserved hypothetical protein; uncharacterized protein	join(1367457..1367738,1367813..1368030,1368103..1368347,1368463..1368653,1368686..1369840)	Theileria annulata	3862314
TA12410	CDS	TA12410	NC_011099.1	1370211	1370974	D	all_bases.cand.1537 - pfcg8-like protein; 1 probable transmembrane helix predicted for TA12410 by TMHMM2.0 at aa 113-135; uncharacterized protein	join(1370211..1370616,1370731..1370837,1370867..1370974)	Theileria annulata	3862450
TA12405	CDS	TA12405	NC_011099.1	1371386	1372889	R	chr2.cand.151 - hypothetical protein, conserved; uncharacterized protein	complement(join(1371386..1372026,1372088..1372889))	Theileria annulata	3862449
TA12400	CDS	TA12400	NC_011099.1	1373305	1373984	R	chr2.cand.150 - score = 9.38; uncharacterized protein	complement(join(1373305..1373483,1373632..1373714,1373773..1373984))	Theileria annulata	3862448
TA12395	CDS	TA12395	NC_011099.1	1374178	1376399	D	chr2.C.cand.354 - score = 8.71; uncharacterized protein	join(1374178..1374264,1374324..1374556,1374649..1375069,1375085..1375265,1375317..1375412,1375445..1375547,1375590..1375640,1375657..1375729,1375880..1376131,1376162..1376334,1376366..1376399)	Theileria annulata	3862447
TA12390	CDS	TA12390	NC_011099.1	1376455	1376960	R	chr2.cand.149 - 40s ribosomal protein s11; 40S ribosomal protein S11, putative	complement(join(1376455..1376904,1376940..1376960))	Theileria annulata	3862446
TA12385	CDS	TA12385	NC_011099.1	1377456	1378101	D	all_bases.cand.1539 - hypothetical protein, conserved, pf10_0097; uncharacterized protein	join(1377456..1377637,1377670..1377817,1377847..1378101)	Theileria annulata	3862445
TA12380	CDS	TA12380	NC_011099.1	1378173	1380162	R	chr2.cand.148 - hypothetical protein; uncharacterized protein	complement(join(1378173..1378373,1378405..1378530,1378559..1378679,1378711..1378778,1378808..1379168,1379204..1379285,1379322..1379432,1379461..1379568,1379622..1379715,1379745..1379801,1379831..1379981,1380011..1380162))	Theileria annulata	3862444
TA12375	CDS	TA12375	NC_011099.1	1380373	1381004	D	all_bases.cand.1540 - hypothetical protein, conserved, pf08_0043; uncharacterized protein	join(1380373..1380566,1380598..1380770,1380802..1381004)	Theileria annulata	3862443
TA12370	CDS	TA12370	NC_011099.1	1381850	1383280	D	chr2.C.cand.358 - possible transporter, PF00083 Sugar (and other) transporter; 12 probable transmembrane helices predicted for TA12370 by TMHMM2.0 at aa 35-54, 100-122, 127-144, 154-176, 183-202, 217-236, 294-316, 331-350, 357-376, 380-402, 409-431 and 446-468; Signal anchor predicted for TA12370 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.704) with cleavage site probability 0.001 between residues 54 and 55; uncharacterized protein	1381850..1383280	Theileria annulata	3862442
TA12360	CDS	TA12360	NC_011099.1	1383357	1385700	D	all_bases.cand.1542 - rna helicase; ATP-dependent helicase, putative	join(1383357..1383953,1384034..1384523,1384552..1384658,1384698..1384828,1384870..1385003,1385058..1385155,1385187..1385423,1385456..1385520,1385553..1385700)	Theileria annulata	3862440
TA12355	CDS	TA12355	NC_011099.1	1385900	1386391	D	chr2.C.cand.360 - conserved hypothetical protein; uncharacterized protein	join(1385900..1385922,1385961..1386069,1386111..1386161,1386193..1386323,1386361..1386391)	Theileria annulata	3862439
TA12350	CDS	TA12350	NC_011099.1	1386605	1387400	D	chr2.C.cand.362 - sec22 vesicle trafficking protein-like 1, synaptobrevin motif; 1 probable transmembrane helix predicted for TA12350 by TMHMM2.0 at aa 215-234; vesicle trafficking protein-like 1, SEC22 homologue, putative	join(1386605..1387007,1387049..1387195,1387225..1387400)	Theileria annulata	3862438
TA12345	CDS	TA12345	NC_011099.1	1387678	1389651	D	chr2.C.cand.363 - t-complex protein 1 epsilon subunit, putative; T-complex protein 1 epsilon subunit, putative	join(1387678..1387908,1387974..1388221,1388285..1388420,1388487..1388627,1388693..1388818,1388852..1389080,1389152..1389651)	Theileria annulata	3862437
TA12340	CDS	TA12340	NC_011099.1	1389816	1390365	R	all_bases.C.cand.270 - ubiquitin-conjugating enzyme e2; ubiquitin-conjugating enzyme E2, putative	complement(join(1389816..1389974,1390004..1390092,1390125..1390365))	Theileria annulata	3862436
TA12335	CDS	TA12335	NC_011099.1	1390598	1392955	D	chr2.C.cand.364 - PF03372 Endonuclease/Exonuclease/phosphatase family; uncharacterized protein	join(1390598..1390851,1390921..1392136,1392171..1392489,1392543..1392769,1392848..1392955)	Theileria annulata	3862435
TA12330	CDS	TA12330	NC_011099.1	1393139	1395076	D	chr2.C.cand.365 - DEAD box RNA helicase; RNA helicase, putative	join(1393139..1393163,1393215..1395076)	Theileria annulata	3862434
TA12325	CDS	TA12325	NC_011099.1	1395294	1397443	D	all_bases.cand.1546 - hypothetical protein, partly conserved, pfc0970w, transmembrane domains; 5 probable transmembrane helices predicted for TA12325 by TMHMM2.0 at aa 156-178, 377-399, 473-490, 555-577 and 581-603; uncharacterized protein	join(1395294..1395662,1395702..1395815,1395845..1395953,1396026..1396836,1396903..1397157,1397218..1397443)	Theileria annulata	3862433
TA12320	CDS	TA12320	NC_011099.1	1397532	1399706	R	chr2.cand.144 - hypothetical protein; uncharacterized protein	complement(1397532..1399706)	Theileria annulata	3862432
TA12315	CDS	TA12315	NC_011099.1	1399841	1400372	R	chr2.cand.143 - hypothetical protein; uncharacterized protein	complement(join(1399841..1400012,1400048..1400263,1400299..1400321,1400355..1400372))	Theileria annulata	3862067
TA12295	CDS	TA12295	NC_011099.1	1402469	1404145	D	chr2.C.cand.367 - DnaJ, signal peptide, apicoplast targetting sequence; chaperone protein DnaJ, putative	join(1402469..1403093,1403150..1403427,1403477..1403611,1403678..1403769,1403802..1403907,1403963..1404145)	Theileria annulata	3862064
TA12290	CDS	TA12290	NC_011099.1	1404340	1405979	D	chr2.C.cand.368 - hypothetical protein; uncharacterized protein	join(1404340..1404433,1404499..1404569,1404599..1404709,1404742..1404782,1404823..1405585,1405617..1405979)	Theileria annulata	3862063
TA12285	CDS	TA12285	NC_011099.1	1406340	1412763	D	chr2.C.cand.369 - hypothetical protein; uncharacterized protein	join(1406340..1406637,1406669..1407235,1407299..1411016,1411088..1411851,1411937..1412763)	Theileria annulata	3862062
TA12280	CDS	TA12280	NC_011099.1	1412906	1415572	D	chr2.C.cand.370 - hypothetical protein, conserved, pfl1655C; uncharacterized protein	join(1412906..1413119,1413213..1413502,1413546..1413644,1413693..1413789,1413849..1413946,1414031..1414102,1414134..1414235,1414291..1414414,1414504..1414731,1414775..1414825,1414857..1414907,1414992..1415176,1415209..1415316,1415376..1415454,1415487..1415572)	Theileria annulata	3862061
TA12275	CDS	TA12275	NC_011099.1	1415720	1417690	D	chr2.C.cand.370 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative	join(1415720..1415875,1415912..1417690)	Theileria annulata	3862060
TA12270	CDS	TA12270	NC_011099.1	1418755	1419795	D	chr2.C.cand.371 - hypothetical protein; uncharacterized protein	1418755..1419795	Theileria annulata	3862059
TA12265	CDS	TA12265	NC_011099.1	1420308	1422278	D	chr2.C.cand.372 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative	join(1420308..1420463,1420500..1422278)	Theileria annulata	3862058
TA12260	CDS	TA12260	NC_011099.1	1423449	1424489	D	chr2.C.cand.373 - hypothetical protein; uncharacterized protein	1423449..1424489	Theileria annulata	3862057
TA12255	CDS	TA12255	NC_011099.1	1425113	1425769	R	chr2.cand.142 - hypothetical protein; uncharacterized protein	complement(join(1425113..1425521,1425561..1425769))	Theileria annulata	3862056
TA12245	CDS	TA12245	NC_011099.1	1425883	1426347	R	chr2.cand.141 - hypothetical protein; 1 probable transmembrane helix predicted for TA12245 by TMHMM2.0 at aa 9-31; uncharacterized protein	complement(join(1425883..1426005,1426078..1426188,1426228..1426347))	Theileria annulata	3862054
TA12240	CDS	TA12240	NC_011099.1	1426558	1427350	D	chr2.C.cand.374 - hypothetical protein, low similarity to 50S ribosomal S9; uncharacterized protein	join(1426558..1426864,1426971..1427350)	Theileria annulata	3862053
TA12235	CDS	TA12235	NC_011099.1	1427517	1429964	R	all_bases.C.cand.267 - WD repeat protein; WD repeat protein, putative; uncharacterized protein	complement(join(1427517..1427903,1427957..1428095,1428128..1428256,1428344..1428414,1428445..1428570,1428599..1428706,1428763..1428887,1428938..1429075,1429106..1429201,1429288..1429435,1429509..1429964))	Theileria annulata	3862052
TA12230	CDS	TA12230	NC_011099.1	1430318	1432468	D	chr2.C.cand.375 - anthranilate synthase, PF00218 Indole-3-glycerol phosphate synthase; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA12230 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA12230 by SignalP 2.0 HMM (Signal peptide probability 0.054, signal anchor probability 0.606) with cleavage site probability 0.014 between residues 32 and 33; anthranilate synthase component II, putative	join(1430318..1430695,1430757..1430955,1430999..1431147,1431195..1431371,1431450..1431995,1432100..1432468)	Theileria annulata	3862051
TA12225	CDS	TA12225	NC_011099.1	1432566	1433885	D	chr2.C.cand.376 - hypothetical protein, signal peptide, transmembrane domain; 1 probable transmembrane helix predicted for TA12225 by TMHMM2.0 at aa 392-414; Signal peptide predicted for TA12225 by SignalP 2.0 HMM (Signal peptide probability 0.945, signal anchor probability 0.000) with cleavage site probability 0.733 between residues 21 and 22; uncharacterized protein	join(1432566..1433251,1433294..1433885)	Theileria annulata	3862050
TA12220	CDS	TA12220	NC_011099.1	1434384	1437904	D	chr2.C.cand.377 - conserved hypothetical protein, transmembrane domains; 4 probable transmembrane helices predicted for TA12220 by TMHMM2.0 at aa 210-228, 245-262, 272-291 and 304-326; uncharacterized protein	join(1434384..1435587,1435653..1435972,1436057..1436665,1436742..1437016,1437082..1437904)	Theileria annulata	3862049
TA12215	CDS	TA12215	NC_011099.1	1438089	1438713	D	all_bases.cand.1558 - conserved hypothetical protein, transmembrane domain; 1 probable transmembrane helix predicted for TA12215 by TMHMM2.0 at aa 48-67; Signal anchor predicted for TA12215 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.961) with cleavage site probability 0.000 between residues 62 and 63; uncharacterized protein	join(1438089..1438302,1438332..1438376,1438457..1438713)	Theileria annulata	3862048
TA12210	CDS	TA12210	NC_011099.1	1438783	1439463	R	chr2.cand.137 - RNA binding protein, PF00076 RNA recognition motif; RNA binding protein, putative	complement(1438783..1439463)	Theileria annulata	3861947
TA12205	CDS	TA12205	NC_011099.1	1439836	1440684	D	uncharacterized protein	join(1439836..1439904,1439942..1439986,1440016..1440684)	Theileria annulata	3861946
TA12200	CDS	TA12200	NC_011099.1	1440792	1443668	D	uncharacterized protein	join(1440792..1441113,1441174..1443668)	Theileria annulata	3861945
TA12190	CDS	TA12190	NC_011099.1	1443719	1445194	R	DNA binding protein PF02891 MIZ zinc finger; hypothetical protein, putative	complement(1443719..1445194)	Theileria annulata	3861943
TA12185	CDS	TA12185	NC_011099.1	1445631	1449176	D	Signal anchor predicted for TA12185 by SignalP 2.0 HMM (Signal peptide probability 0.266, signal anchor probability 0.617) with cleavage site probability 0.214 between residues 29 and 30; falcilysin, putative	1445631..1449176	Theileria annulata	3861942
TA12180	CDS	TA12180	NC_011099.1	1449247	1453196	D	7 probable transmembrane helices predicted for TA12180 by TMHMM2.0 at aa 12-34, 44-66, 227-249, 271-293, 300-322, 370-392 and 427-449; ion transport protein, putative	join(1449247..1449625,1449707..1449925,1449956..1450112,1450142..1450279,1450312..1450441,1450472..1450599,1450629..1450729,1450766..1450903,1450933..1451177,1451206..1451312,1451342..1451447,1451479..1451635,1451667..1451822,1451851..1452105,1452134..1452302,1452332..1452483,1452514..1453196)	Theileria annulata	3861941
TA12175	CDS	TA12175	NC_011099.1	1453503	1456862	D	falcilysin-related protein, putative	1453503..1456862	Theileria annulata	3861940
TA12170	CDS	TA12170	NC_011099.1	1456876	1457598	R	uncharacterized protein	complement(join(1456876..1456984,1457114..1457177,1457212..1457243,1457337..1457443,1457536..1457598))	Theileria annulata	3861939
TA12165	CDS	TA12165	NC_011099.1	1457977	1458677	D	Possible signal peptide present; 1 probable transmembrane helix predicted for TA12165 by TMHMM2.0 at aa 123-145; Signal peptide predicted for TA12165 by SignalP 2.0 HMM (Signal peptide probability 0.728, signal anchor probability 0.186) with cleavage site probability 0.677 between residues 25 and 26; uncharacterized protein	join(1457977..1458337,1458430..1458505,1458542..1458677)	Theileria annulata	3861938
TA12160	CDS	TA12160	NC_011099.1	1458801	1459283	D	uncharacterized protein	join(1458801..1458873,1458903..1459204,1459239..1459283)	Theileria annulata	3861937
TA12155	CDS	TA12155	NC_011099.1	1459306	1459874	R	ATP synthase delta chain, mitochondrial, PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase delta chain, mitochondrial	complement(join(1459306..1459345,1459376..1459528,1459561..1459702,1459745..1459874))	Theileria annulata	3861936
TA12150	CDS	TA12150	NC_011099.1	1460129	1461351	D	uncharacterized protein	join(1460129..1460160,1460196..1460291,1460328..1460440,1460599..1460767,1460833..1460850,1460882..1460951,1460982..1461059,1461089..1461149,1461182..1461351)	Theileria annulata	3861935
TA12145	CDS	TA12145	NC_011099.1	1461612	1464485	D	uncharacterized protein	join(1461612..1461977,1462009..1464129,1464159..1464333,1464364..1464485)	Theileria annulata	3861934
TA12135	CDS	TA12135	NC_011099.1	1464574	1466245	R	uncharacterized protein	complement(join(1464574..1466040,1466192..1466245))	Theileria annulata	3861932
TA12130	CDS	TA12130	NC_011099.1	1466476	1467666	R	uncharacterized protein	complement(1466476..1467666)	Theileria annulata	3861931
TA12125	CDS	TA12125	NC_011099.1	1468105	1470132	D	nucleolar GTP-binding protein 1, putative	join(1468105..1468137,1468183..1468380,1468481..1468758,1468790..1469487,1469517..1469683,1469713..1470132)	Theileria annulata	3861930
TA12120	CDS	TA12120	NC_011099.1	1470572	1472443	R	uncharacterized protein	complement(join(1470572..1471112,1471181..1471399,1471432..1471643,1471675..1471826,1471858..1471964,1472025..1472443))	Theileria annulata	3861929
TA12115	CDS	TA12115	NC_011099.1	1472820	1473665	R	uncharacterized protein	complement(1472820..1473665)	Theileria annulata	3862047
TA12110	CDS	TA12110	NC_011099.1	1473682	1474334	R	adp-ribosylation factor, putative	complement(join(1473682..1473769,1473814..1474052,1474116..1474334))	Theileria annulata	3862046
TA12105	CDS	TA12105	NC_011099.1	1474807	1477590	R	heat shock protein 90, putative	complement(join(1474807..1475112,1475289..1475789,1476009..1477300,1477521..1477590))	Theileria annulata	3862045
TA12100	CDS	TA12100	NC_011099.1	1478723	1481538	D	heat shock protein, putative	join(1478723..1478829,1478983..1479199,1479277..1479859,1479896..1480140,1480174..1480289,1480371..1481538)	Theileria annulata	3862044
TA12095	CDS	TA12095	NC_011099.1	1481700	1482700	D	Pfam hit to mitochondrion-associated cytochrome c oxidase assembly factor. PF02630 SCO1/SenC; sco1/2-like protein, putative	join(1481700..1481825,1481856..1481871,1481981..1482103,1482144..1482212,1482269..1482310,1482349..1482434,1482465..1482573,1482612..1482700)	Theileria annulata	3862043
TA12090	CDS	TA12090	NC_011099.1	1482725	1483514	R	protein kinase, putative	complement(join(1482725..1482835,1482876..1482926,1482996..1483403,1483458..1483514))	Theileria annulata	3862042
TA12085	CDS	TA12085	NC_011099.1	1483729	1484397	D	uncharacterized protein	join(1483729..1483807,1483840..1483941,1483986..1484229,1484271..1484397)	Theileria annulata	3862041
TA12080	CDS	TA12080	NC_011099.1	1484420	1485704	D	uncharacterized protein	join(1484420..1484867,1484931..1485101,1485169..1485285,1485330..1485424,1485474..1485568,1485611..1485704)	Theileria annulata	3862040
TA12075	CDS	TA12075	NC_011099.1	1485907	1488783	D	Signal peptide predicted for TA12075 by SignalP 2.0 HMM (Signal peptide probability 0.866, signal anchor probability 0.120) with cleavage site probability 0.390 between residues 23 and 24; uncharacterized protein	1485907..1488783	Theileria annulata	3862039
TA12070	CDS	TA12070	NC_011099.1	1488946	1489761	D	uncharacterized protein	join(1488946..1489536,1489596..1489695,1489727..1489761)	Theileria annulata	3862038
TA12065	CDS	TA12065	NC_011099.1	1490424	1492302	D	uncharacterized protein	join(1490424..1490549,1490609..1491418,1491465..1491603,1491637..1491755,1491823..1491893,1491924..1492095,1492126..1492302)	Theileria annulata	3862037
TA12060	CDS	TA12060	NC_011099.1	1492552	1493008	D	60S ribosomal protein l37, putative	join(1492552..1492672,1492854..1493008)	Theileria annulata	3862036
TA12055	CDS	TA12055	NC_011099.1	1493055	1493579	D	uncharacterized protein	1493055..1493579	Theileria annulata	3862035
TA12050	CDS	TA12050	NC_011099.1	1494004	1500483	D	Contains possible signal peptide; 1 probable transmembrane helix predicted for TA12050 by TMHMM2.0 at aa 21-43; uncharacterized protein	join(1494004..1494080,1494125..1498393,1498455..1498526,1498560..1498887,1498993..1499106,1499174..1499644,1499797..1500483)	Theileria annulata	3862034
TA12045	CDS	TA12045	NC_011099.1	1500672	1502366	R	membrane protein, contains signal peptide; 11 probable transmembrane helices predicted for TA12045 by TMHMM2.0 at aa 21-43, 58-77, 84-106, 116-138, 145-167, 182-204, 308-330, 345-367, 380-399, 409-431 and 489-511; Signal peptide predicted for TA12045 by SignalP 2.0 HMM (Signal peptide probability 0.631, signal anchor probability 0.026) with cleavage site probability 0.309 between residues 32 and 33; membrane protein family member, putative	complement(1500672..1502366)	Theileria annulata	3862033
TA12040	CDS	TA12040	NC_011099.1	1502964	1506632	R	uncharacterized protein	complement(join(1502964..1503364,1503459..1504235,1504321..1505349,1505420..1505600,1505643..1506329,1506525..1506632))	Theileria annulata	3862032
TA12030	CDS	TA12030	NC_011099.1	1506852	1507672	R	uncharacterized protein	complement(join(1506852..1506905,1506937..1507030,1507097..1507245,1507321..1507385,1507442..1507523,1507592..1507672))	Theileria annulata	3862030
TA12025	CDS	TA12025	NC_011099.1	1507952	1509075	R	1 probable transmembrane helix predicted for TA12025 by TMHMM2.0 at aa 287-309; syntaxin-like, putative	complement(join(1507952..1508196,1508260..1508329,1508381..1508887,1508959..1509075))	Theileria annulata	3862029
TA12020	CDS	TA12020	NC_011099.1	1509700	1510983	D	Contains possible signal sequence; hypothetical protein with WD40 domain, putative	join(1509700..1509876,1509908..1509975,1510064..1510433,1510484..1510547,1510589..1510690,1510727..1510782,1510812..1510888,1510941..1510983)	Theileria annulata	3862028
TA12015	CDS	TA12015	NC_011099.1	1511139	1512142	R	uncharacterized protein	complement(join(1511139..1511260,1511410..1512142))	Theileria annulata	3861987
TA12010	CDS	TA12010	NC_011099.1	1512565	1514292	R	uncharacterized protein	complement(join(1512565..1513080,1513163..1513359,1513456..1513555,1513630..1513806,1513993..1514292))	Theileria annulata	3861986
TA12005	CDS	TA12005	NC_011099.1	1514969	1516261	D	8 probable transmembrane helices predicted for TA12005 by TMHMM2.0 at aa 52-74, 89-111, 118-137, 147-169, 240-262, 307-329, 336-358 and 363-385; Signal anchor predicted for TA12005 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.768) with cleavage site probability 0.001 between residues 21 and 22; transporter protein cg10, putative	1514969..1516261	Theileria annulata	3861985
TA12000	CDS	TA12000	NC_011099.1	1517701	1518013	D	ribosomal protein s29, putative	join(1517701..1517756,1517834..1517933,1518005..1518013)	Theileria annulata	3861984
TA11995	CDS	TA11995	NC_011099.1	1518086	1519777	R	DnaJ protein, putative	complement(1518086..1519777)	Theileria annulata	3861983
TA11990	CDS	TA11990	NC_011099.1	1520654	1521146	D	uncharacterized protein	join(1520654..1520824,1520916..1521146)	Theileria annulata	3861982
TA11985	CDS	TA11985	NC_011099.1	1521220	1523780	R	1 probable transmembrane helix predicted for TA11985 by TMHMM2.0 at aa 713-735; uncharacterized protein	complement(join(1521220..1522620,1522663..1523614,1523671..1523780))	Theileria annulata	3861981
TA11975	CDS	TA11975	NC_011099.1	1523935	1525784	D	mitochondrial processing peptidase alpha subunit PF00675 Insulinase (Peptidase family M16); mitochondrial processing peptidase alpha subunit, putative	join(1523935..1523997,1524114..1524630,1524715..1525047,1525120..1525784)	Theileria annulata	3861979
TA11970	CDS	TA11970	NC_011099.1	1525919	1526457	R	g10 protein, putative	complement(join(1525919..1526148,1526241..1526457))	Theileria annulata	3861978
TA11965	CDS	TA11965	NC_011099.1	1527227	1530538	D	Contains putative signal peptide, P-,Q-rich family 2, PF02178 AT hook motif; Signal peptide predicted for TA11965 by SignalP 2.0 HMM (Signal peptide probability 0.945, signal anchor probability 0.000) with cleavage site probability 0.863 between residues 22 and 23; putative P-,Q-rich family protein, putative	1527227..1530538	Theileria annulata	3861977
TA11960	CDS	TA11960	NC_011099.1	1531611	1534541	D	Contains possible signal peptide; 1 probable transmembrane helix predicted for TA11960 by TMHMM2.0 at aa 7-29; putative P-,Q-rich family protein, putative	1531611..1534541	Theileria annulata	3861976
TA11955	CDS	TA11955	NC_011099.1	1535410	1539249	D	Contains possible signal peptide, P-, Q-rich family; 1 probable transmembrane helix predicted for TA11955 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA11955 by SignalP 2.0 HMM (Signal peptide probability 0.718, signal anchor probability 0.225) with cleavage site probability 0.402 between residues 18 and 19; hypothetical protein P-, Q-rich family protein, putative	1535410..1539249	Theileria annulata	3861975
TA11950	CDS	TA11950	NC_011099.1	1540144	1544022	D	Contains putative signal peptide; 1 probable transmembrane helix predicted for TA11950 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA11950 by SignalP 2.0 HMM (Signal peptide probability 0.602, signal anchor probability 0.000) with cleavage site probability 0.356 between residues 23 and 24; putative P-, Q-rich protein family protein, putative	1540144..1544022	Theileria annulata	3861974
TA11945	CDS	TA11945	NC_011099.1	1545190	1545984	D	uncharacterized protein	1545190..1545984	Theileria annulata	3861973
TA11940	CDS	TA11940	NC_011099.1	1546201	1546989	D	1 probable transmembrane helix predicted for TA11940 by TMHMM2.0 at aa 7-29; uncharacterized protein	1546201..1546989	Theileria annulata	3861972
TA11935	CDS	TA11935	NC_011099.1	1547350	1548102	D	Signal peptide predicted for TA11935 by SignalP 2.0 HMM (Signal peptide probability 0.839, signal anchor probability 0.000) with cleavage site probability 0.581 between residues 22 and 23; uncharacterized protein	1547350..1548102	Theileria annulata	3861971
TA11930	CDS	TA11930	NC_011099.1	1548364	1548663	R	3 probable transmembrane helices predicted for TA11930 by TMHMM2.0 at aa 4-26, 33-55 and 75-92; uncharacterized protein	complement(1548364..1548663)	Theileria annulata	3861970
TA11915	CDS	TA11915	NC_011099.1	1549046	1550107	D	Contains possible signal peptide; Signal peptide predicted for TA11915 by SignalP 2.0 HMM (Signal peptide probability 0.900, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 22 and 23; uncharacterized protein	1549046..1550107	Theileria annulata	3862411
TA11910	CDS	TA11910	NC_011099.1	1550712	1551473	D	uncharacterized protein	1550712..1551473	Theileria annulata	3862410
TA11905	CDS	TA11905	NC_011099.1	1551842	1552441	D	Signal peptide predicted for TA11905 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.000) with cleavage site probability 0.468 between residues 17 and 18; uncharacterized protein	join(1551842..1552122,1552315..1552441)	Theileria annulata	3862409
TA11900	CDS	TA11900	NC_011099.1	1552730	1553491	D	uncharacterized protein	1552730..1553491	Theileria annulata	3862408
TA11895	CDS	TA11895	NC_011099.1	1554543	1555679	R	transcriptional regulator, putative	complement(join(1554543..1554905,1554949..1555018,1555047..1555262,1555330..1555419,1555526..1555603,1555642..1555679))	Theileria annulata	3862407
TA11890	CDS	TA11890	NC_011099.1	1555920	1556629	D	chr2.C.cand.417 - hypothetical protein, signal peptide; 1 probable transmembrane helix predicted for TA11890 by TMHMM2.0 at aa 7-26; Signal anchor predicted for TA11890 by SignalP 2.0 HMM (Signal peptide probability 0.208, signal anchor probability 0.686) with cleavage site probability 0.089 between residues 29 and 30; uncharacterized protein	join(1555920..1556263,1556320..1556398,1556445..1556519,1556597..1556629)	Theileria annulata	3862406
TA11885	CDS	TA11885	NC_011099.1	1557117	1557576	D	human hepatopoietin-like protein, putative; uncharacterized protein	join(1557117..1557272,1557337..1557576)	Theileria annulata	3862405
TA11880	CDS	TA11880	NC_011099.1	1557726	1558400	R	DNA-directed RNA polymerase 2 subunit, putative	complement(join(1557726..1558056,1558158..1558301,1558372..1558400))	Theileria annulata	3862404
TA11875	CDS	TA11875	NC_011099.1	1558615	1559332	R	4 probable transmembrane helices predicted for TA11875 by TMHMM2.0 at aa 36-55, 70-92, 113-135 and 139-161; uncharacterized protein	complement(join(1558615..1558666,1558699..1558769,1558828..1558956,1559045..1559332))	Theileria annulata	3862403
TA11870	CDS	TA11870	NC_011099.1	1559454	1561005	R	sun-family protein, putative	complement(join(1559454..1559690,1559895..1559975,1560010..1560105,1560136..1560264,1560301..1560443,1560540..1561005))	Theileria annulata	3862402
TA11865	CDS	TA11865	NC_011099.1	1561252	1561809	D	chr2.C.cand.419 -conserved hypothetical protein; uncharacterized protein	1561252..1561809	Theileria annulata	3862401
TA11860	CDS	TA11860	NC_011099.1	1561868	1562893	R	transcription initiation factor tfiib, putative	complement(1561868..1562893)	Theileria annulata	3862400
TA11855	CDS	TA11855	NC_011099.1	1562978	1563418	R	uncharacterized protein	complement(1562978..1563418)	Theileria annulata	3862399
TA11850	CDS	TA11850	NC_011099.1	1563589	1564838	D	proteasome regulatory subunit, putative	join(1563589..1563735,1563824..1563920,1563951..1564085,1564169..1564309,1564340..1564524,1564605..1564838)	Theileria annulata	3862398
TA11845	CDS	TA11845	NC_011099.1	1565607	1568043	D	1-phosphatidylinositol-4-phosphate 5-kinase or 1-phosphatidylinositol-5-phosphate 4-kinase, putative	join(1565607..1565731,1565838..1568043)	Theileria annulata	3862397
TA11840	CDS	TA11840	NC_011099.1	1568214	1571059	R	bromodomain protein, putative	complement(join(1568214..1570407,1570449..1570603,1570722..1570865,1571012..1571059))	Theileria annulata	3862396
TA11835	CDS	TA11835	NC_011099.1	1571195	1574453	D	DNA topoisomerase i, putative	join(1571195..1571212,1571251..1573021,1573053..1573261,1573362..1573442,1573475..1574101,1574131..1574213,1574243..1574453)	Theileria annulata	3862395
TA11830	CDS	TA11830	NC_011099.1	1574522	1575790	R	uncharacterized protein	complement(join(1574522..1574589,1574620..1574857,1574956..1575248,1575336..1575597,1575707..1575790))	Theileria annulata	3862394
TA11825	CDS	TA11825	NC_011099.1	1575830	1576759	R	3-demethylubiquinone-9 3-methyltransferase-like protein, putative	complement(1575830..1576759)	Theileria annulata	3862393
TA11820	CDS	TA11820	NC_011099.1	1576892	1577615	D	glutaredoxin-related protein, putative	join(1576892..1577023,1577052..1577144,1577179..1577490,1577526..1577615)	Theileria annulata	3862431
TA11810	CDS	TA11810	NC_011099.1	1577699	1579066	R	5 probable transmembrane helices predicted for TA11810 by TMHMM2.0 at aa 145-167, 197-219, 292-314, 324-346 and 423-445; uncharacterized protein	complement(1577699..1579066)	Theileria annulata	3862429
TA11805	CDS	TA11805	NC_011099.1	1579945	1581795	D	some similarity to erythrocyte membrane-associated antigen; 1 probable transmembrane helix predicted for TA11805 by TMHMM2.0 at aa 460-479; Signal peptide predicted for TA11805 by SignalP 2.0 HMM (Signal peptide probability 0.632, signal anchor probability 0.000) with cleavage site probability 0.540 between residues 25 and 26; erythrocyte membrane-associated malaria antigen-like	join(1579945..1580342,1580388..1580566,1580635..1580881,1580974..1581296,1581373..1581574,1581666..1581795)	Theileria annulata	3862428
TA11800	CDS	TA11800	NC_011099.1	1581863	1582579	R	Shows weak similarity to acyl phosphatases; uncharacterized protein	complement(join(1581863..1581965,1581996..1582117,1582150..1582241,1582270..1582579))	Theileria annulata	3862427
TA11795	CDS	TA11795	NC_011099.1	1582795	1584055	D	serine/threonine kinase, putative	join(1582795..1582917,1582998..1583092,1583152..1583223,1583254..1584055)	Theileria annulata	3862426
TA11790	CDS	TA11790	NC_011099.1	1584341	1585756	R	Shows some similarity to cyclins; cyclin-like protein, putative	complement(join(1584341..1584406,1584435..1584515,1584595..1584772,1584821..1584910,1585018..1585520,1585601..1585756))	Theileria annulata	3862425
TA11785	CDS	TA11785	NC_011099.1	1586356	1587496	D	uncharacterized protein	join(1586356..1587046,1587102..1587155,1587219..1587496)	Theileria annulata	3862424
TA11780	CDS	TA11780	NC_011099.1	1587621	1588566	D	KOW motif, signal peptide, apicoplast target sequence; 50s ribosomal subunit l24, putative	join(1587621..1587932,1587988..1588083,1588127..1588212,1588242..1588288,1588320..1588366,1588406..1588424,1588454..1588566)	Theileria annulata	3862423
TA11775	CDS	TA11775	NC_011099.1	1588700	1591663	R	uncharacterized protein	complement(1588700..1591663)	Theileria annulata	3862422
TA11770	CDS	TA11770	NC_011099.1	1592338	1593548	R	Contains possible signal peptide and apicoplast target sequence; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11770 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.002) with cleavage site probability 0.653 between residues 18 and 19; uncharacterized protein	complement(join(1592338..1592444,1592481..1592557,1592638..1592716,1592881..1593040,1593084..1593144,1593175..1593548))	Theileria annulata	3862421
TA11765	CDS	TA11765	NC_011099.1	1593799	1595336	R	uncharacterized protein	complement(join(1593799..1594103,1594136..1594236,1594303..1594436,1594487..1594545,1594611..1594814,1594844..1595080,1595153..1595336))	Theileria annulata	3862420
TA11755	CDS	TA11755	NC_011099.1	1595825	1597987	D	Contains possible signal peptide; 1 probable transmembrane helix predicted for TA11755 by TMHMM2.0 at aa 7-24; Signal peptide predicted for TA11755 by SignalP 2.0 HMM (Signal peptide probability 0.676, signal anchor probability 0.305) with cleavage site probability 0.539 between residues 26 and 27; uncharacterized protein	1595825..1597987	Theileria annulata	3862418
TA11750	CDS	TA11750	NC_011099.1	1598191	1598485	R	uncharacterized protein	complement(join(1598191..1598374,1598412..1598485))	Theileria annulata	3862417
TA11745	CDS	TA11745	NC_011099.1	1599740	1602679	D	10 probable transmembrane helices predicted for TA11745 by TMHMM2.0 at aa 434-456, 466-488, 524-543, 558-575, 619-638, 658-675, 687-709, 719-741, 762-784 and 799-816; G-protein associated signal transduction protein, putative	join(1599740..1600532,1600564..1601275,1601331..1601492,1601524..1601757,1601835..1601975,1602006..1602095,1602125..1602253,1602339..1602519,1602551..1602679)	Theileria annulata	3862416
TA11740	CDS	TA11740	NC_011099.1	1603089	1604693	D	3 probable transmembrane helices predicted for TA11740 by TMHMM2.0 at aa 77-99, 150-172 and 185-219; uncharacterized protein	join(1603089..1603403,1603436..1604068,1604163..1604693)	Theileria annulata	3862415
TA11735	CDS	TA11735	NC_011099.1	1604785	1608414	R	translation initiation factor if-2, putative	complement(join(1604785..1604835,1604880..1605022,1605083..1605149,1605273..1605863,1605956..1606162,1606275..1606817,1606872..1607071,1607124..1607219,1607279..1607595,1607627..1607937,1607996..1608076,1608108..1608149,1608188..1608240,1608315..1608414))	Theileria annulata	3862414
TA11730	CDS	TA11730	NC_011099.1	1608713	1609271	R	PHF5-like zinc-finger protein, putative	complement(join(1608713..1608886,1608954..1609066,1609217..1609271))	Theileria annulata	3862413
TA11725	CDS	TA11725	NC_011099.1	1609352	1613199	R	uncharacterized protein	complement(join(1609352..1610165,1610195..1613199))	Theileria annulata	3861697
TA11720	CDS	TA11720	NC_011099.1	1613289	1615822	R	protein kinase, putative	complement(join(1613289..1614097,1614129..1614440,1614517..1615822))	Theileria annulata	3861696
TA11715	CDS	TA11715	NC_011099.1	1617794	1621736	D	importin-like protein, putative	join(1617794..1621013,1621111..1621736)	Theileria annulata	3861695
TA11710	CDS	TA11710	NC_011099.1	1622189	1625225	D	Spm2 protein	join(1622189..1622237,1622413..1624801,1624901..1625225)	Theileria annulata	3861694
TA11700	CDS	TA11700	NC_011099.1	1625285	1627988	D	N-ethylmaleimide-sensitive factor, putative	join(1625285..1625347,1625382..1625470,1625506..1625708,1625895..1626176,1626208..1626293,1626332..1626514,1626545..1626616,1626647..1626868,1626915..1627310,1627366..1627593,1627629..1627760,1627809..1627988)	Theileria annulata	3861692
TA11695	CDS	TA11695	NC_011099.1	1628186	1629634	D	dihydroorotate dehydrogenase, mitochondrial precursor, putative	join(1628186..1628396,1628431..1628605,1628641..1628998,1629105..1629149,1629183..1629329,1629364..1629444,1629481..1629547,1629585..1629634)	Theileria annulata	3861691
TA11690	CDS	TA11690	NC_011099.1	1629967	1634703	D	1 probable transmembrane helix predicted for TA11690 by TMHMM2.0 at aa 1485-1507; uncharacterized protein	join(1629967..1630152,1630185..1630494,1630528..1630560,1630590..1632877,1632935..1633158,1633197..1634703)	Theileria annulata	3861690
TA11685	CDS	TA11685	NC_011099.1	1634763	1636356	R	apicoplast phe trna synthetase, signal peptide present, possible apicoplast target sequence present, PF01409 tRNA synthetases class II core domain (F), PF03147 Ferredoxin-fold anticodon binding domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA11685 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA11685 by SignalP 2.0 HMM (Signal peptide probability 0.945, signal anchor probability 0.037) with cleavage site probability 0.596 between residues 23 and 24; phenylalanine-trna synthetase, putative	complement(join(1634763..1635610,1635642..1636356))	Theileria annulata	3861689
TA11680	CDS	TA11680	NC_011099.1	1636554	1639240	D	Weak Pfam hit to MAC/Perforin domain;e=0.00011;codon 333-653; contains possible signal peptide; Signal peptide predicted for TA11680 by SignalP 2.0 HMM (Signal peptide probability 0.718, signal anchor probability 0.000) with cleavage site probability 0.614 between residues 21 and 22; uncharacterized protein	join(1636554..1637595,1637680..1637879,1637911..1638122,1638151..1638347,1638378..1638802,1638834..1639085,1639115..1639240)	Theileria annulata	3861688
TA11675	CDS	TA11675	NC_011099.1	1639694	1644097	R	5'-3' exoribonuclease 2, putative	complement(1639694..1644097)	Theileria annulata	3861687
TA11670	CDS	TA11670	NC_011099.1	1644324	1646945	R	uncharacterized protein	complement(1644324..1646945)	Theileria annulata	3861686
TA11665	CDS	TA11665	NC_011099.1	1647078	1649432	R	uncharacterized protein	complement(1647078..1649432)	Theileria annulata	3861685
TA11660	CDS	TA11660	NC_011099.1	1651257	1655437	R	2 probable transmembrane helices predicted for TA11660 by TMHMM2.0 at aa 586-608 and 643-665; coatomer alpha subunit, putative	complement(join(1651257..1651831,1651961..1652553,1652591..1652756,1652791..1652865,1652897..1653014,1653066..1653452,1653512..1655437))	Theileria annulata	3861684
TA11655	CDS	TA11655	NC_011099.1	1656225	1656563	D	uncharacterized protein	join(1656225..1656438,1656514..1656563)	Theileria annulata	3861683
TA11640	CDS	TA11640	NC_011099.1	1656612	1657215	D	ubiquitin-conjugating enzyme e2, putative	join(1656612..1656694,1656735..1656795,1656831..1656939,1656995..1657215)	Theileria annulata	3861680
TA11635	CDS	TA11635	NC_011099.1	1657455	1658055	D	rna binding protein, putative	join(1657455..1657532,1657568..1657743,1657773..1658055)	Theileria annulata	3861679
TA11630	CDS	TA11630	NC_011099.1	1658200	1662661	R	DNA repair protein rad50, putative	complement(join(1658200..1658376,1658439..1658616,1658661..1658863,1658901..1658960,1658991..1659135,1659167..1659242,1659289..1659454,1659493..1659613,1659643..1659747,1659778..1659927,1659982..1660062,1660092..1660225,1660257..1660288,1660328..1660410,1660454..1660484,1660515..1660697,1660743..1660833,1660864..1660940,1660970..1661085,1661116..1661240,1661274..1661372,1661402..1661507,1661537..1661653,1661687..1661854,1661884..1661919,1661950..1662040,1662072..1662156,1662185..1662226,1662256..1662321,1662352..1662504,1662539..1662661))	Theileria annulata	3861678
TA11625	CDS	TA11625	NC_011099.1	1663354	1664626	D	1 probable transmembrane helix predicted for TA11625 by TMHMM2.0 at aa 99-121; uncharacterized protein	join(1663354..1663633,1663674..1664626)	Theileria annulata	3861890
TA11620	CDS	TA11620	NC_011099.1	1664815	1667631	D	uncharacterized protein	join(1664815..1664987,1665020..1666057,1666090..1666098,1666170..1666278,1666311..1666693,1666851..1667631)	Theileria annulata	3861889
TA11615	CDS	TA11615	NC_011099.1	1667879	1670006	D	putative RING-finger-like protein	join(1667879..1667941,1667976..1668571,1668608..1670006)	Theileria annulata	3861888
TA11610	CDS	TA11610	NC_011099.1	1670249	1672189	R	heat shock 70 kDa protein	complement(1670249..1672189)	Theileria annulata	3861887
TA11605	CDS	TA11605	NC_011099.1	1672937	1673443	R	uncharacterized protein	complement(1672937..1673443)	Theileria annulata	3861886
TA11600	CDS	TA11600	NC_011099.1	1673746	1676479	D	1 probable transmembrane helix predicted for TA11600 by TMHMM2.0 at aa 849-871; uncharacterized protein	join(1673746..1675777,1675830..1675937,1675989..1676479)	Theileria annulata	3861885
TA11595	CDS	TA11595	NC_011099.1	1676596	1677283	R	Contains possible transmembrane domains; 2 probable transmembrane helices predicted for TA11595 by TMHMM2.0 at aa 133-151 and 155-174; uncharacterized protein	complement(join(1676596..1676691,1676723..1676836,1676877..1677017,1677056..1677283))	Theileria annulata	3861884
TA11585	CDS	TA11585	NC_011099.1	1677317	1679864	R	DNA repair helicase, putative	complement(join(1677317..1677667,1677699..1677849,1677882..1677988,1678024..1678873,1678913..1679156,1679187..1679403,1679435..1679566,1679604..1679864))	Theileria annulata	3861882
TA11580	CDS	TA11580	NC_011099.1	1679967	1682396	R	dynamin-like protein, putative	complement(join(1679967..1680027,1680064..1680240,1680271..1680407,1680436..1680759,1680790..1680942,1681007..1681356,1681389..1681476,1681507..1681657,1681688..1682166,1682199..1682396))	Theileria annulata	3861881
TA11575	CDS	TA11575	NC_011099.1	1682637	1683416	R	Possible signal sequence and apicoplast target sequence present; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11575 by SignalP 2.0 HMM (Signal peptide probability 0.662, signal anchor probability 0.020) with cleavage site probability 0.440 between residues 21 and 22; ubiquitin,putative	complement(join(1682637..1682681,1682728..1682885,1682924..1682996,1683044..1683177,1683314..1683416))	Theileria annulata	3861880
TA11570	CDS	TA11570	NC_011099.1	1684016	1684921	D	4 probable transmembrane helices predicted for TA11570 by TMHMM2.0 at aa 112-134, 169-191, 211-232 and 271-293; ADP/ATP transporter, putative	1684016..1684921	Theileria annulata	3861879
TA11565	CDS	TA11565	NC_011099.1	1685503	1686744	D	1 probable transmembrane helix predicted for TA11565 by TMHMM2.0 at aa 43-65; Signal anchor predicted for TA11565 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.983) with cleavage site probability 0.000 between residues 61 and 62; cysteine proteinase, putative	1685503..1686744	Theileria annulata	3861878
TA11560	CDS	TA11560	NC_011099.1	1687175	1688723	D	nima-related protein kinase, putative	join(1687175..1687267,1687309..1687621,1687678..1688723)	Theileria annulata	3861877
TA11555	CDS	TA11555	NC_011099.1	1688821	1690125	D	uncharacterized protein	1688821..1690125	Theileria annulata	3861876
TA11550	CDS	TA11550	NC_011099.1	1690809	1691653	R	uncharacterized protein	complement(join(1690809..1690937,1690967..1691161,1691194..1691340,1691376..1691543,1691576..1691653))	Theileria annulata	3861875
TA11545	CDS	TA11545	NC_011099.1	1692016	1693067	D	uncharacterized protein	join(1692016..1692832,1692862..1693067)	Theileria annulata	3861874
TA11540	CDS	TA11540	NC_011099.1	1693112	1695211	R	pyruvate kinase, putative	complement(1693112..1695211)	Theileria annulata	3861873
TA11535	CDS	TA11535	NC_011099.1	1695518	1696168	D	uncharacterized protein	join(1695518..1695808,1695842..1696168)	Theileria annulata	3861872
TA11530	CDS	TA11530	NC_011099.1	1696257	1697608	D	uncharacterized protein	join(1696257..1696991,1697031..1697294,1697366..1697608)	Theileria annulata	3862372
TA11525	CDS	TA11525	NC_011099.1	1697693	1700515	R	uncharacterized protein	complement(join(1697693..1697917,1697961..1698598,1698646..1698745,1698817..1698952,1698984..1699052,1699083..1699165,1699214..1699317,1699357..1699512,1699560..1699669,1699703..1699785,1699818..1699958,1700004..1700162,1700194..1700433,1700474..1700515))	Theileria annulata	3862371
TA11520	CDS	TA11520	NC_011099.1	1700840	1703639	D	uncharacterized protein	join(1700840..1700974,1701008..1701367,1701397..1701458,1701488..1701683,1701713..1701925,1701959..1702104,1702157..1702257,1702287..1702808,1702837..1702967,1702998..1703273,1703305..1703442,1703472..1703639)	Theileria annulata	3862370
TA11515	CDS	TA11515	NC_011099.1	1704140	1704544	D	1 probable transmembrane helix predicted for TA11515 by TMHMM2.0 at aa 108-130; uncharacterized protein	1704140..1704544	Theileria annulata	3862369
TA11510	CDS	TA11510	NC_011099.1	1704797	1706243	D	DNA-damage inducible protein ddi1-like, putative	join(1704797..1704824,1704866..1705114,1705150..1705319,1705351..1705498,1705531..1705607,1705641..1705720,1705750..1706115,1706144..1706243)	Theileria annulata	3862368
TA11505	CDS	TA11505	NC_011099.1	1706338	1707269	R	Possible transmembrane domains present; 3 probable transmembrane helices predicted for TA11505 by TMHMM2.0 at aa 66-88, 98-120 and 160-182; uncharacterized protein	complement(join(1706338..1706498,1706531..1706654,1706703..1706937,1706968..1707269))	Theileria annulata	3862367
TA11500	CDS	TA11500	NC_011099.1	1708043	1710227	D	uncharacterized protein	join(1708043..1708115,1708169..1708410,1708439..1708701,1708734..1708885,1708923..1709166,1709198..1709343,1709374..1709498,1709527..1709625,1709667..1709753,1709784..1709914,1709952..1710053,1710083..1710227)	Theileria annulata	3862366
TA11495	CDS	TA11495	NC_011099.1	1710293	1711520	R	Contains putative signal peptide; 1 probable transmembrane helix predicted for TA11495 by TMHMM2.0 at aa 20-37; Signal anchor predicted for TA11495 by SignalP 2.0 HMM (Signal peptide probability 0.154, signal anchor probability 0.606) with cleavage site probability 0.088 between residues 42 and 43; uncharacterized protein	complement(join(1710293..1710730,1710789..1710873,1710904..1711520))	Theileria annulata	3862365
TA11490	CDS	TA11490	NC_011099.1	1712987	1714258	D	uncharacterized protein	1712987..1714258	Theileria annulata	3862364
TA11475	CDS	TA11475	NC_011099.1	1714358	1715830	R	methionine-trna ligase, putative	complement(join(1714358..1714441,1714473..1714568,1714619..1714801,1714871..1714928,1715006..1715046,1715076..1715185,1715224..1715299,1715330..1715425,1715455..1715526,1715556..1715678,1715717..1715830))	Theileria annulata	3862361
TA11470	CDS	TA11470	NC_011099.1	1716733	1718170	D	eukaryotic translation initiation factor 4a, putative	join(1716733..1717074,1717105..1717342,1717414..1717891,1717958..1718084,1718153..1718170)	Theileria annulata	3862360
TA11465	CDS	TA11465	NC_011099.1	1718197	1719808	R	Contains a putative signal peptide and a possible EGF-like domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11465 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.733 between residues 21 and 22; uncharacterized protein	complement(join(1718197..1718275,1718307..1719006,1719044..1719286,1719317..1719349,1719426..1719629,1719662..1719712,1719745..1719808))	Theileria annulata	3862359
TA11460	CDS	TA11460	NC_011099.1	1720556	1721362	D	Contains putative signal petideand transmembrane domain; 5 probable transmembrane helices predicted for TA11460 by TMHMM2.0 at aa 12-34, 49-71, 91-113, 133-155 and 162-179; uncharacterized protein	join(1720556..1720770,1720801..1720894,1720925..1721064,1721150..1721302,1721335..1721362)	Theileria annulata	3862358
TA11455	CDS	TA11455	NC_011099.1	1721440	1722544	R	uncharacterized protein	complement(join(1721440..1722251,1722493..1722544))	Theileria annulata	3862357
TA11450	CDS	TA11450	NC_011099.1	1722868	1727739	R	chr2.cand.54 - conserved hypothetical protein, kelch motif, Histidine kinase-like ATPases domain; uncharacterized protein	complement(1722868..1727739)	Theileria annulata	3862356
TA11445	CDS	TA11445	NC_011099.1	1728877	1729640	R	uncharacterized protein	complement(join(1728877..1729157,1729191..1729261,1729329..1729366,1729425..1729640))	Theileria annulata	3862355
TA11440	CDS	TA11440	NC_011099.1	1729738	1733984	R	smc protein, putative	complement(join(1729738..1730042,1730103..1730226,1730299..1731707,1731776..1733984))	Theileria annulata	3862354
TA11435	CDS	TA11435	NC_011099.1	1734397	1734842	D	The P. falciparum hypothetical protein mal13p1.81pf is longer at Nterm; 2 probable transmembrane helices predicted for TA11435 by TMHMM2.0 at aa 49-71 and 92-114; uncharacterized protein	join(1734397..1734507,1734542..1734626,1734658..1734842)	Theileria annulata	3862353
TA11430	CDS	TA11430	NC_011099.1	1734878	1737139	R	uncharacterized protein	complement(1734878..1737139)	Theileria annulata	3861772
TA16085	CDS	TA16085	NC_011099.1	1737617	1738299	D	uncharacterized protein	join(1737617..1737754,1737785..1737944,1737981..1738157,1738196..1738299)	Theileria annulata	3862313
TA16080	CDS	TA16080	NC_011099.1	1738596	1741770	D	internal splicing possible exon III; replication licensing factor, putative	join(1738596..1739041,1739104..1739223,1739271..1741770)	Theileria annulata	3862312
TA16075	CDS	TA16075	NC_011099.1	1741808	1743865	R	uncharacterized protein	complement(join(1741808..1742073,1742103..1742347,1742409..1742479,1742509..1742603,1742644..1743007,1743076..1743209,1743240..1743389,1743421..1743865))	Theileria annulata	3862311
TA16070	CDS	TA16070	NC_011099.1	1744073	1745315	D	ubiquitin carboxyl-terminal hydrolase, putative	join(1744073..1744360,1744391..1744445,1744475..1744522,1744558..1745315)	Theileria annulata	3862310
TA16065	CDS	TA16065	NC_011099.1	1745741	1748732	D	uncharacterized protein	join(1745741..1745996,1746042..1747242,1747272..1747747,1747777..1748595,1748626..1748732)	Theileria annulata	3862309
TA16060	CDS	TA16060	NC_011099.1	1748768	1750932	D	uncharacterized protein	join(1748768..1749028,1749074..1749111,1749145..1749289,1749323..1750207,1750237..1750932)	Theileria annulata	3862308
TA15995	CDS	TA15995	NC_011099.1	1751112	1753383	R	long-chain acyl-coa synthetase, putative	complement(join(1751112..1751525,1751588..1752160,1752212..1753109,1753147..1753231,1753269..1753383))	Theileria annulata	3861845
TA15990	CDS	TA15990	NC_011099.1	1753528	1753924	D	u6 snrna-associated sm-like protein Lsm3, putative	join(1753528..1753552,1753593..1753678,1753721..1753816,1753847..1753924)	Theileria annulata	3861844
TA15885	CDS	TA15885	NC_011099.1	1753962	1754882	R	Contains 5 putative transmembrane domains; 5 probable transmembrane helices predicted for TA15885 by TMHMM2.0 at aa 90-109, 129-148, 224-246, 253-270 and 285-304; integral membrane protein, putative	complement(1753962..1754882)	Theileria annulata	3861862
TA15880	CDS	TA15880	NC_011099.1	1754976	1756430	D	uncharacterized protein	join(1754976..1755120,1755163..1755189,1755231..1755293,1755358..1755484,1755517..1755776,1755806..1755992,1756022..1756430)	Theileria annulata	3861861
TA15775	CDS	TA15775	NC_011099.1	1756506	1757362	R	Contains putative signal peptide; DNA binding protein, putative	complement(join(1756506..1756863,1756899..1757046,1757087..1757189,1757228..1757362))	Theileria annulata	3861995
TA15770	CDS	TA15770	NC_011099.1	1757560	1758654	D	uncharacterized protein	1757560..1758654	Theileria annulata	3861994
TA15715	CDS	TA15715	NC_011099.1	1759574	1761384	D	1 probable transmembrane helix predicted for TA15715 by TMHMM2.0 at aa 27-49; Signal anchor predicted for TA15715 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.990) with cleavage site probability 0.000 between residues 43 and 44; cysteine protease, putative	join(1759574..1760525,1760594..1761384)	Theileria annulata	3862121
TA15660	CDS	TA15660	NC_011099.1	1761772	1763291	D	1 probable transmembrane helix predicted for TA15660 by TMHMM2.0 at aa 36-58; Signal anchor predicted for TA15660 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues -1 and 0; cysteine protease, putative	join(1761772..1762420,1762477..1763291)	Theileria annulata	3862110
TA15605	CDS	TA15605	NC_011099.1	1763566	1763955	D	1 probable transmembrane helix predicted for TA15605 by TMHMM2.0 at aa 75-97; uncharacterized protein	1763566..1763955	Theileria annulata	3862157
TA15550	CDS	TA15550	NC_011099.1	1764117	1765649	D	DnaJ protein, putative	join(1764117..1764487,1764521..1764609,1764640..1764779,1764811..1764858,1764889..1764988,1765021..1765649)	Theileria annulata	3862146
TA15495	CDS	TA15495	NC_011099.1	1765733	1768292	D	replication factor-a protein 1, putative	join(1765733..1765890,1766004..1766141,1766175..1766271,1766332..1766363,1766395..1766589,1766629..1766701,1766735..1766803,1766835..1767080,1767151..1767292,1767325..1767437,1767493..1767610,1767644..1767719,1767749..1767838,1767868..1767940,1767971..1768078,1768112..1768174,1768206..1768292)	Theileria annulata	3861621
TA15440	CDS	TA15440	NC_011099.1	1768662	1769472	D	50S ribosomal protein l24, no apparent signal or apicoplast target sequence present, contains putative Pfam (PF00467) KOW motif; 50S ribosomal protein l24, putative	join(1768662..1768940,1769000..1769106,1769153..1769220,1769255..1769331,1769365..1769472)	Theileria annulata	3861585
TA15385	CDS	TA15385	NC_011099.1	1770066	1770869	D	60S ribosomal protein l10, putative	join(1770066..1770287,1770359..1770559,1770624..1770869)	Theileria annulata	3861574
TA15280	CDS	TA15280	NC_011099.1	1771148	1772157	R	Contains putative Pafm (PF00397) WW domain; uncharacterized protein	complement(join(1771148..1771615,1771694..1771807,1771864..1772157))	Theileria annulata	3861742
TA15275	CDS	TA15275	NC_011099.1	1772729	1773223	D	transcription factor btf3 homolog, putative	1772729..1773223	Theileria annulata	3861741
TA15220	CDS	TA15220	NC_011099.1	1773769	1774251	D	60S ribosomal protein l21, putative	1773769..1774251	Theileria annulata	3861663
TA15115	CDS	TA15115	NC_011099.1	1774377	1775654	R	arginine N-methyltransferase, putative	complement(join(1774377..1774715,1774746..1774877,1774939..1775016,1775047..1775378,1775426..1775654))	Theileria annulata	3862196
TA15060	CDS	TA15060	NC_011099.1	1775903	1778029	R	putative regulatory protein, C-terminus: 2 x PF00642 Zinc finger C-x8-C-x5-C-x3-H type; Zinc finger-like regulatory protein, putative	complement(1775903..1778029)	Theileria annulata	3862185
TA15005	CDS	TA15005	NC_011099.1	1778782	1781000	R	uncharacterized protein	complement(join(1778782..1779730,1779826..1780323,1780455..1780649,1780762..1781000))	Theileria annulata	3862213
TA15000	CDS	TA15000	NC_011099.1	1781355	1782271	D	2 probable transmembrane helices predicted for TA15000 by TMHMM2.0 at aa 201-223 and 243-265; uncharacterized protein	join(1781355..1781708,1781757..1781850,1781892..1782271)	Theileria annulata	3862212
TA14895	CDS	TA14895	NC_011099.1	1784338	1785138	R	60S ribosomal protein l7a, putative	complement(1784338..1785138)	Theileria annulata	3862230
TA14890	CDS	TA14890	NC_011099.1	1786383	1787602	D	60S ribosomal protein l5, putative	join(1786383..1786455,1786700..1787520,1787576..1787602)	Theileria annulata	3862229
TA14785	CDS	TA14785	NC_011099.1	1787605	1788821	R	uncharacterized protein	complement(join(1787605..1787710,1787748..1787798,1787913..1788115,1788162..1788290,1788321..1788581,1788690..1788821))	Theileria annulata	3862287
TA14730	CDS	TA14730	NC_011099.1	1789337	1789685	R	ribosomal protein l29, putative	complement(join(1789337..1789423,1789493..1789558,1789650..1789685))	Theileria annulata	3862346
TA14725	CDS	TA14725	NC_011099.1	1790486	1791437	D	uncharacterized protein	join(1790486..1790654,1790778..1791106,1791163..1791208,1791238..1791437)	Theileria annulata	3862345
TA14670	CDS	TA14670	NC_011099.1	1791760	1793953	D	uncharacterized protein	join(1791760..1792996,1793079..1793953)	Theileria annulata	3862334
TA14565	CDS	TA14565	NC_011099.1	1793993	1794552	R	ribosomal protein l27, putative	complement(join(1793993..1794074,1794105..1794218,1794302..1794552))	Theileria annulata	3862507
TA14510	CDS	TA14510	NC_011099.1	1794996	1796466	R	uncharacterized protein	complement(join(1794996..1795496,1795531..1796466))	Theileria annulata	3862496
TA14505	CDS	TA14505	NC_011099.1	1796696	1797854	D	uncharacterized protein	join(1796696..1796849,1796884..1797015,1797047..1797156,1797194..1797255,1797334..1797574,1797636..1797854)	Theileria annulata	3862495
TA14400	CDS	TA14400	NC_011099.1	1797946	1801242	R	uncharacterized protein	complement(join(1797946..1798276,1798347..1798516,1798566..1799839,1799890..1800049,1800106..1800515,1800555..1800989,1801029..1801242))	Theileria annulata	3862171
TA14395	CDS	TA14395	NC_011099.1	1801468	1803139	D	uncharacterized protein	join(1801468..1801781,1801819..1801954,1802042..1802230,1802302..1802394,1802444..1803139)	Theileria annulata	3862170
TA14290	CDS	TA14290	NC_011099.1	1803206	1804767	R	Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA14290 by TMHMM2.0 at aa 5-23; Signal peptide predicted for TA14290 by SignalP 2.0 HMM (Signal peptide probability 0.958, signal anchor probability 0.006) with cleavage site probability 0.640 between residues 20 and 21; 1-deoxy-D-xylulose 5-phosphate reducto-isomerase, putative	complement(join(1803206..1803274,1803344..1804328,1804363..1804542,1804580..1804610,1804704..1804767))	Theileria annulata	3861634
TA14235	CDS	TA14235	NC_011099.1	1805435	1807050	R	uncharacterized protein	complement(join(1805435..1805758,1805801..1806975,1807032..1807050))	Theileria annulata	3862099
TA14180	CDS	TA14180	NC_011099.1	1807249	1808205	R	uncharacterized protein	complement(join(1807249..1807374,1807456..1808205))	Theileria annulata	3862088
TA14175	CDS	TA14175	NC_011099.1	1809897	1813497	D	uncharacterized protein	join(1809897..1813103,1813204..1813497)	Theileria annulata	3862087
TA14070	CDS	TA14070	NC_011099.1	1813580	1814614	R	uncharacterized protein	complement(1813580..1814614)	Theileria annulata	3861736
TA14065	CDS	TA14065	NC_011099.1	1815086	1815854	D	RNA and export factor binding protein, putative	join(1815086..1815137,1815180..1815406,1815459..1815527,1815636..1815854)	Theileria annulata	3861735
TA13960	CDS	TA13960	NC_011099.1	1816015	1816868	R	2 probable transmembrane helices predicted for TA13960 by TMHMM2.0 at aa 62-84 and 162-184; uncharacterized protein	complement(join(1816015..1816191,1816263..1816868))	Theileria annulata	3861926
TA13955	CDS	TA13955	NC_011099.1	1817518	1818321	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA13955 by SignalP 2.0 HMM (Signal peptide probability 0.793, signal anchor probability 0.199) with cleavage site probability 0.482 between residues 21 and 22; uncharacterized protein	1817518..1818321	Theileria annulata	3861925
TA13900	CDS	TA13900	NC_011099.1	1818737	1819129	D	40s ribosomal protein s15a, putative	1818737..1819129	Theileria annulata	3861914
TA13795	CDS	TA13795	NC_011099.1	1819258	1820757	R	hypothetical protein, conserved; uncharacterized protein	complement(join(1819258..1820389,1820476..1820689,1820724..1820757))	Theileria annulata	3861796
TA13740	CDS	TA13740	NC_011099.1	1821366	1824138	R	uncharacterized protein	complement(join(1821366..1821476,1821574..1824138))	Theileria annulata	3861902
TA13735	CDS	TA13735	NC_011099.1	1824872	1825760	D	inorganic pyrophosphatase, putative	join(1824872..1824902,1825012..1825760)	Theileria annulata	3861901
TA13630	CDS	TA13630	NC_011099.1	1825825	1828081	R	uncharacterized protein	complement(join(1825825..1825998,1826028..1826096,1826157..1826227,1826312..1826395,1826426..1826627,1826714..1828081))	Theileria annulata	3861822
TA13575	CDS	TA13575	NC_011099.1	1828215	1831284	R	aaa family ATPase, putative	complement(join(1828215..1828342,1828406..1828861,1828947..1829042,1829190..1830119,1830249..1831284))	Theileria annulata	3862468
TA13570	CDS	TA13570	NC_011099.1	1831866	1832978	D	deoxyhypusine synthase, putative	1831866..1832978	Theileria annulata	3862467
TA13465	CDS	TA13465	NC_011099.1	1833082	1835255	R	all_bases.C.cand.171 - nmt1, PF01233 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain, PF02799 Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; glycylpeptide N-tetradecanoyltransferase 1, putative	complement(join(1833082..1833117,1833149..1833214,1833303..1833517,1833546..1833643,1833693..1833763,1833889..1833963,1834057..1834143,1834201..1834374,1834432..1834581,1834653..1834724,1834757..1834804,1834942..1835109,1835139..1835255))	Theileria annulata	3861964
TA13410	CDS	TA13410	NC_011099.1	1835793	1837148	R	actin ii, putative	complement(join(1835793..1836684,1836780..1836921,1837040..1837148))	Theileria annulata	3861953
TA13405	CDS	TA13405	NC_011099.1	1837415	1842611	D	Phosphatidylinositol-4-phosphate 5-Kinase, putative	join(1837415..1837842,1837894..1840262,1840366..1842019,1842077..1842611)	Theileria annulata	3861952
TA13350	CDS	TA13350	NC_011099.1	1842856	1844706	D	uncharacterized protein	1842856..1844706	Theileria annulata	3861559
TA13245	CDS	TA13245	NC_011099.1	1844890	1850539	R	Signal peptide predicted for TA13245 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.001) with cleavage site probability 0.516 between residues 24 and 25; uncharacterized protein	complement(join(1844890..1846668,1846798..1847240,1847286..1847300,1847432..1848295,1848437..1849633,1849760..1850053,1850234..1850266,1850365..1850539))	Theileria annulata	3862253
TA13190	CDS	TA13190	NC_011099.1	1851246	1851759	R	PF02136 Nuclear transport factor 2 (NTF2) domain; nuclear transport factor 2, putative	complement(join(1851246..1851627,1851677..1851759))	Theileria annulata	3862086
TA13185	CDS	TA13185	NC_011099.1	1852048	1852921	D	Contains a putative signal peptide; Signal peptide predicted for TA13185 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.000) with cleavage site probability 0.873 between residues 17 and 18; peptidyl-prolyl cis-trans isomerase taCyP precursor, putative	join(1852048..1852329,1852530..1852647,1852731..1852921)	Theileria annulata	3862085
TA13130	CDS	TA13130	NC_011099.1	1853338	1855158	D	uncharacterized protein	1853338..1855158	Theileria annulata	3862074
TA13025	CDS	TA13025	NC_011099.1	1855488	1856371	R	uncharacterized protein	complement(join(1855488..1855819,1855882..1856371))	Theileria annulata	3862013
TA12970	CDS	TA12970	NC_011099.1	1856723	1858506	R	aspartate aminotransferase, cytoplasmic, putative	complement(join(1856723..1857148,1857322..1857741,1857937..1858180,1858358..1858506))	Theileria annulata	3862483
TA12915	CDS	TA12915	NC_011099.1	1858951	1860091	R	cytochrome c oxidase subunit, putative	complement(join(1858951..1859051,1859229..1859512,1859664..1860091))	Theileria annulata	3862472
TA12910	CDS	TA12910	NC_011099.1	1860848	1861983	D	PF00808 Histone-like transcription factor (CBF/NF-Y) and archaeal histone, PF02969 TATA box binding protein associated factor (TAF); histone h3-like, putative	join(1860848..1860851,1861013..1861983)	Theileria annulata	3862471
TA12805	CDS	TA12805	NC_011099.1	1862271	1863281	R	serine/threonine protein phosphatase pp-x isozyme 1, putative	complement(join(1862271..1863044,1863141..1863281))	Theileria annulata	3861773
TA12750	CDS	TA12750	NC_011099.1	1863660	1865264	R	uncharacterized protein	complement(join(1863660..1863815,1863996..1864939,1865222..1865264))	Theileria annulata	3862134
TA12695	CDS	TA12695	NC_011099.1	1865660	1867588	R	Putative signal peptide and apicoplast target sequence present; prolyl-t-RNA synthase, putative	complement(join(1865660..1866024,1866106..1866337,1866564..1867249,1867403..1867450,1867537..1867588))	Theileria annulata	3862280
TA12690	CDS	TA12690	NC_011099.1	1868362	1869702	D	histone deacetylase, putative	1868362..1869702	Theileria annulata	3862279
TA12635	CDS	TA12635	NC_011099.1	1870307	1872346	D	Theileria-specific hypothetical protein family member, putative	1870307..1872346	Theileria annulata	3862268
TA12580	CDS	TA12580	NC_011099.1	1873761	1875611	D	Theileria-specific hypothetical protein family member, putative	1873761..1875611	Theileria annulata	3861711
TA12525	CDS	TA12525	NC_011099.1	1877026	1878984	D	Theileria-specific hypothetical protein family member, putative	1877026..1878984	Theileria annulata	3861700
TA12420	CDS	TA12420	NC_011099.1	1879432	1880272	R	1 probable transmembrane helix predicted for TA12420 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA12420 by SignalP 2.0 HMM (Signal peptide probability 0.183, signal anchor probability 0.644) with cleavage site probability 0.044 between residues 29 and 30; yippee-like zinc binding protein, putative	complement(join(1879432..1879503,1879551..1879618,1879806..1879906,1880097..1880272))	Theileria annulata	3862315
TA12365	CDS	TA12365	NC_011099.1	1880689	1881138	R	1 probable transmembrane helix predicted for TA12365 by TMHMM2.0 at aa 123-145; GPI-Anchor Signal predicted for TA12365 by DGPI v2.04, no cleavage site predicted; thioredoxin, putative	complement(1880689..1881138)	Theileria annulata	3862441
TA12310	CDS	TA12310	NC_011099.1	1881423	1882800	R	vacuolar ATP synthase, putative	complement(join(1881423..1881918,1882100..1882800))	Theileria annulata	3862066
TA12305	CDS	TA12305	NC_011099.1	1883220	1886613	D	1 probable transmembrane helix predicted for TA12305 by TMHMM2.0 at aa 784-806; uncharacterized protein	join(1883220..1883901,1883999..1884914,1885042..1885176,1885336..1885555,1885644..1885777,1885911..1886028,1886046..1886224,1886244..1886348,1886451..1886613)	Theileria annulata	3862065
TA12250	CDS	TA12250	NC_011099.1	1887087	1889033	D	uncharacterized protein	1887087..1889033	Theileria annulata	3862055
TA12195	CDS	TA12195	NC_011099.1	1889214	1890680	D	subtelomeric sfi-fragment-related protein family member, putative	1889214..1890680	Theileria annulata	3861944
TA12140	CDS	TA12140	NC_011099.1	1890941	1892560	D	subtelomeric sfi-fragment-related protein family member, putative	1890941..1892560	Theileria annulata	3861933
TA12035	CDS	TA12035	NC_011099.1	1892670	1897435	R	Contains putative signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA12035 by SignalP 2.0 HMM (Signal peptide probability 0.855, signal anchor probability 0.000) with cleavage site probability 0.500 between residues 18 and 19; uncharacterized protein	complement(join(1892670..1896623,1896851..1897435))	Theileria annulata	3862031
TA11980	CDS	TA11980	NC_011099.1	1897610	1898159	R	hypothetical protein, conserved; uncharacterized protein	complement(join(1897610..1897664,1897702..1897871,1897989..1898159))	Theileria annulata	3861980
TA11925	CDS	TA11925	NC_011099.1	1898451	1899421	R	3 probable transmembrane helices predicted for TA11925 by TMHMM2.0 at aa 46-68, 186-208 and 223-245; uncharacterized protein	complement(join(1898451..1898573,1898624..1898830,1898924..1899170,1899210..1899421))	Theileria annulata	3861969
TA11920	CDS	TA11920	NC_011099.1	1899572	1900803	D	uncharacterized protein	join(1899572..1899869,1900016..1900803)	Theileria annulata	3862412
TA11815	CDS	TA11815	NC_011099.1	1901228	1903011	R	ubiquitin-transferase, putative	complement(join(1901228..1901476,1901596..1903011))	Theileria annulata	3862430
TA11760	CDS	TA11760	NC_011099.1	1903158	1904975	R	Contains a putative signal peptide; uncharacterized protein	complement(join(1903158..1904340,1904377..1904975))	Theileria annulata	3862419
TA11705	CDS	TA11705	NC_011099.1	1905123	1909799	R	Shows weak hit (4.4e-06) to Pfam PF00169 PH domain; uncharacterized protein	complement(join(1905123..1905356,1905427..1905550,1905640..1905983,1906097..1906193,1906362..1906663,1906773..1907295,1907402..1907499,1907575..1907668,1907785..1909640,1909779..1909799))	Theileria annulata	3861693
TA11650	CDS	TA11650	NC_011099.1	1909986	1911362	R	chr2.cand.5 - hypothetical protein, low similarity to replication factor; uncharacterized protein	complement(join(1909986..1910089,1910158..1910290,1910353..1910511,1910564..1910910,1911055..1911174,1911299..1911362))	Theileria annulata	3861682
TA11645	CDS	TA11645	NC_011099.1	1911594	1912784	D	chr2.C.cand.515 - hypothetical protein; uncharacterized protein	join(1911594..1911681,1911724..1911769,1911925..1912534,1912572..1912784)	Theileria annulata	3861681
TA11590	CDS	TA11590	NC_011099.1	1913058	1915361	D	chr2.C.cand.516 - hypothetical protein; uncharacterized protein	1913058..1915361	Theileria annulata	3861883
TA11485	CDS	TA11485	NC_011099.1	1915451	1920520	R	chr2.cand.3 - hypothetical protein, signal peptide; Signal peptide predicted for TA11485 by SignalP 2.0 HMM (Signal peptide probability 0.950, signal anchor probability 0.000) with cleavage site probability 0.394 between residues 14 and 15; uncharacterized protein	complement(1915451..1920520)	Theileria annulata	3862363
TA11480	CDS	TA11480	NC_011099.1	1921082	1922416	D	chr2.C.cand.517 - hypothetical protein, signal peptide; Signal peptide predicted for TA11480 by SignalP 2.0 HMM (Signal peptide probability 0.622, signal anchor probability 0.000) with cleavage site probability 0.493 between residues 22 and 23; SfiI-subtelomeric fragment related protein family member, putative	1921082..1922416	Theileria annulata	3862362
TA11425	CDS	TA11425	NC_011099.1	1922938	1927521	R	10 probable transmembrane helices predicted for TA11425 by TMHMM2.0 at aa 141-163, 175-197, 290-312, 319-341, 398-420, 839-861, 906-928, 974-993, 997-1019 and 1080-1102; ABC-transporter protein family, putative	complement(1922938..1927521)	Theileria annulata	3861771
TA11420	CDS	TA11420	NC_011099.1	1928676	1931633	D	Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA11420 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA11420 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.606 between residues 22 and 23; uncharacterized protein	join(1928676..1929958,1929998..1930435,1930481..1930894,1930928..1931633)	Theileria annulata	3861770
TA11415	CDS	TA11415	NC_011099.1	1932888	1934876	D	Contains a putative signal peptide; SfiI-subtelomeric fragment related protein family member, putative	1932888..1934876	Theileria annulata	3861769
TA11410	CDS	TA11410	NC_011099.1	1935169	1936044	D	contains a putative signal peptide; 1 probable transmembrane helix predicted for TA11410 by TMHMM2.0 at aa 257-276; Signal peptide predicted for TA11410 by SignalP 2.0 HMM (Signal peptide probability 0.835, signal anchor probability 0.000) with cleavage site probability 0.828 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	1935169..1936044	Theileria annulata	3861768
TA11405	CDS	TA11405	NC_011099.1	1936306	1937631	D	Contains a putative signal peptide; subtelomeric sfi-fragment-related protein family member, putative	1936306..1937631	Theileria annulata	3861767
TA11400	CDS	TA11400	NC_011099.1	1938366	1940765	D	Contains a putatice signal peptide; Signal peptide predicted for TA11400 by SignalP 2.0 HMM (Signal peptide probability 0.717, signal anchor probability 0.000) with cleavage site probability 0.704 between residues 20 and 21; SfiI-subtelomeric fragment related protein family member, putative	1938366..1940765	Theileria annulata	3861766
TA11395	CDS	TA11395	NC_011099.1	1941191	1942687	D	Contains a putative signal peptide; Theileria-specific sub-telomeric protein, SVSP family, putative	1941191..1942687	Theileria annulata	3861765
TA11390	CDS	TA11390	NC_011099.1	1942993	1944585	D	signal peptide, telomeric PQ rich family protein; 1 probable transmembrane helix predicted for TA11390 by TMHMM2.0 at aa 494-516; Signal peptide predicted for TA11390 by SignalP 2.0 HMM (Signal peptide probability 0.930, signal anchor probability 0.000) with cleavage site probability 0.918 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	1942993..1944585	Theileria annulata	3861764
TA11385	CDS	TA11385	NC_011099.1	1945039	1947288	D	chr2.C.cand.525 - partial P,Q-rich family; Signal peptide predicted for TA11385 by SignalP 2.0 HMM (Signal peptide probability 0.701, signal anchor probability 0.000) with cleavage site probability 0.690 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	1945039..1947288	Theileria annulata	3861763
TA09420	CDS	TA09420	NC_011099.1	1947519	1948880	D	Tap387d05.p1c.cand.2 - score = 20.90; Theileria-specific sub-telomeric protein, SVSP family, putative	1947519..1948880	Theileria annulata	3861756
TA09425	CDS	TA09425	NC_011099.1	1949082	1950743	D	Tap387d05.p1c.cand.3 - score = 20.68; SMART 1 transmembrane domain at aa 13-35; 1 probable transmembrane helix predicted for TA09425 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09425 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.754) with cleavage site probability 0.001 between residues 40 and 41; Theileria-specific sub-telomeric protein, SVSP family, putative	1949082..1950743	Theileria annulata	3861757
TA09430	CDS	TA09430	NC_011099.1	1950994	1952640	D	Tap387d05.p1c.cand.4 - score = 31.52; Signal peptide predicted for TA09430 by SignalP 2.0 HMM (Signal peptide probability 0.895, signal anchor probability 0.076) with cleavage site probability 0.454 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	1950994..1952640	Theileria annulata	3861758
TA09435	CDS	TA09435	NC_011099.1	1953343	1954290	D	Tap387d05.p1c.cand.5 - score = 16.83; Theileria-specific sub-telomeric protein, SVSP family, putative	1953343..1954290	Theileria annulata	3861759
TA09440	CDS	TA09440	NC_011099.1	1954963	1959120	R	1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA09440 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA09440 by SignalP 2.0 HMM (Signal peptide probability 0.319, signal anchor probability 0.674) with cleavage site probability 0.117 between residues 25 and 26; uncharacterized protein	complement(join(1954963..1955118,1955146..1959120))	Theileria annulata	3861760
TA09445	CDS	TA09445	NC_011099.1	1961396	1964125	D	Tap387d05.p1c.cand.6 - score = 49.56; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA09445 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA09445 by SignalP 2.0 HMM (Signal peptide probability 0.319, signal anchor probability 0.674) with cleavage site probability 0.117 between residues 25 and 26; uncharacterized protein	1961396..1964125	Theileria annulata	3861761
TA09450	CDS	TA09450	NC_011099.1	1967600	1976875	D	Tap387d05.p1c.cand.7 - score = 196.75; Signal peptide predicted for TA09450 by SignalP 2.0 HMM (Signal peptide probability 0.770, signal anchor probability 0.001) with cleavage site probability 0.657 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	1967600..1976875	Theileria annulata	3861762
TA17565	CDS	TA17565	NC_011100.1	2557	6069	R	TapBAC24e05.p1k.cand.5 - score = 89.63; SfiI-subtelomeric fragment related protein family member, putative	complement(2557..6069)	Theileria annulata	3864585
TA17560	CDS	TA17560	NC_011100.1	7552	8335	R	TapBAC24e05.p1k.cand.4 - score = 10.34; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA17560 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA17560 by SignalP 2.0 HMM (Signal peptide probability 0.319, signal anchor probability 0.674) with cleavage site probability 0.117 between residues 25 and 26; uncharacterized protein	complement(join(7552..7860,7919..8335))	Theileria annulata	3864584
TA17555	CDS	TA17555	NC_011100.1	9537	11222	D	TapBAC24e05.p1k.C.cand.2 - score = 35.12; SMART 1 transmembrane domain at aa 13-30; 1 probable transmembrane helix predicted for TA17555 by TMHMM2.0 at aa 13-30; Signal anchor predicted for TA17555 by SignalP 2.0 HMM (Signal peptide probability 0.004, signal anchor probability 0.714) with cleavage site probability 0.004 between residues 30 and 31; Theileria-specific sub-telomeric protein, SVSP family, putative	9537..11222	Theileria annulata	3864583
TA17550	CDS	TA17550	NC_011100.1	11545	13278	D	TapBAC24e05.p1k.C.cand.3 - score = 27.84; Signal peptide predicted for TA17550 by SignalP 2.0 HMM (Signal peptide probability 0.981, signal anchor probability 0.017) with cleavage site probability 0.579 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	11545..13278	Theileria annulata	3864582
TA17545	CDS	TA17545	NC_011100.1	14073	15323	R	note; TapBAC24e05.p1k.cand.3 - score = 20.67; Signal peptide predicted for TA17545 by SignalP 2.0 HMM (Signal peptide probability 0.891, signal anchor probability 0.087) with cleavage site probability 0.866 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(14073..15323)	Theileria annulata	3864581
TA17540	CDS	TA17540	NC_011100.1	15865	17595	R	note; TapBAC24e05.p1k.cand.2 - score = 24.02; Signal peptide predicted for TA17540 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.019) with cleavage site probability 0.925 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(15865..17595)	Theileria annulata	3864580
TA17535	CDS	TA17535	NC_011100.1	17903	20356	R	TapBAC24e05.p1k.cand.1 - score = 29.29; Signal peptide predicted for TA17535 by SignalP 2.0 HMM (Signal peptide probability 0.951, signal anchor probability 0.026) with cleavage site probability 0.914 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(17903..20356)	Theileria annulata	3864579
TA02740	CDS	TA02740	NC_011100.1	20629	22206	R	Tap-140g05.q1c.cand.33 - score = 28.44; Signal peptide predicted for TA02740 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.019) with cleavage site probability 0.925 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(20629..22206)	Theileria annulata	3864974
TA02735	CDS	TA02735	NC_011100.1	22651	23256	R	Tap-140g05.q1c.cand.32 - score = 12.13; SfiI-subtelomeric fragment related protein family member, putative	complement(22651..23256)	Theileria annulata	3864973
TA02730	CDS	TA02730	NC_011100.1	24527	29101	D	note; Tap-140g05.q1c.C.cand.1 - score = 55.24; SMART 7 transmembrane domains at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423 and 438-460; 2 AAA (SM0382) domains at aa 549-753, E()=1.64e-03; 1265-1449, E()=1.55e-01; pfam:ABC_membrane (PF00664) at aa 848-1132, E()=8.30e-02; 12 probable transmembrane helices predicted for TA02730 by TMHMM2.0 at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423, 438-460, 838-860, 901-923, 959-981, 996-1018 and 1083-1105; ABC transporter, putative	join(24527..28616,28716..29101)	Theileria annulata	3864972
TA02725	CDS	TA02725	NC_011100.1	29567	32503	R	note; Tap-140g05.q1c.cand.30 - score = 53.79; 1 probable transmembrane helix predicted for TA02725 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA02725 by SignalP 2.0 HMM (Signal peptide probability 0.846, signal anchor probability 0.115) with cleavage site probability 0.569 between residues 22 and 23; uncharacterized protein	complement(join(29567..31187,31227..32503))	Theileria annulata	3864971
TA02720	CDS	TA02720	NC_011100.1	34684	39261	D	note; Tap-140g05.q1c.C.cand.2 - score = 59.78; SMART 12 transmembrane domains at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423, 438-460, 838-860, 901-923, 959-981, 996-1018 and 1083-1105; 2 AAA (SM0382) at aa 549-753, E()=1.89e-03; 1265-1496, E()=1.12e-01; 12 probable transmembrane helices predicted for TA02720 by TMHMM2.0 at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423, 438-460, 838-860, 901-923, 959-981, 996-1018 and 1083-1105; ABC protein, putative	34684..39261	Theileria annulata	3864970
TA02715	CDS	TA02715	NC_011100.1	40013	42766	R	note; Tap-140g05.q1c.cand.28 - score = 52.92; 1 probable transmembrane helix predicted for TA02715 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA02715 by SignalP 2.0 HMM (Signal peptide probability 0.937, signal anchor probability 0.063) with cleavage site probability 0.452 between residues 21 and 22; uncharacterized protein	complement(40013..42766)	Theileria annulata	3864969
TA02710	CDS	TA02710	NC_011100.1	43716	44426	R	note; Tap-140g05.q1c.cand.27 - score = 14.52; 1 probable transmembrane helix predicted for TA02710 by TMHMM2.0 at aa 7-29; Signal anchor predicted for TA02710 by SignalP 2.0 HMM (Signal peptide probability 0.295, signal anchor probability 0.686) with cleavage site probability 0.216 between residues 20 and 21; uncharacterized protein	complement(43716..44426)	Theileria annulata	3864968
TA02705	CDS	TA02705	NC_011100.1	45379	46116	R	note; Tap-140g05.q1c.cand.26 - score = 14.61; uncharacterized protein	complement(45379..46116)	Theileria annulata	3864967
TA02700	CDS	TA02700	NC_011100.1	46547	48347	R	note; Tap-140g05.q1c.cand.25 - score = 36.59; SMART pfam:Ribosomal_L15 (PF01305) at aa 264-369, E()=1.40e-21; Signal peptide predicted for TA02700 by SignalP 2.0 HMM (Signal peptide probability 0.646, signal anchor probability 0.022) with cleavage site probability 0.573 between residues 16 and 17; ribosomal protein L15, putative	complement(join(46547..46774,46821..46913,46944..47155,47186..47366,47399..47498,47561..47755,47791..47855,47886..48031,48107..48347))	Theileria annulata	3864966
TA02695	CDS	TA02695	NC_011100.1	48428	48922	D	SMART 1 transmembrane domain at aa 13-35; pfam:Ribosomal_L17 (PF01196) at aa 64-162, E()=7.10e-15; 1 probable transmembrane helix predicted for TA02695 by TMHMM2.0 at aa 13-35; 50S ribosomal protein L17, putative	48428..48922	Theileria annulata	3864965
TA02690	CDS	TA02690	NC_011100.1	49015	51456	R	note; Tap-140g05.q1c.cand.24 - score = 32.04; uncharacterized protein	complement(join(49015..49111,49167..49310,49364..49470,49526..49649,49693..50222,50350..50800,50867..51273,51340..51456))	Theileria annulata	3864964
TA02685	CDS	TA02685	NC_011100.1	51685	53147	R	chromodomain protein (HP1-like), putative	complement(join(51685..51790,51863..52086,52162..52600,52679..52755,52937..52996,53028..53147))	Theileria annulata	3864963
TA02680	CDS	TA02680	NC_011100.1	53488	55015	R	note; Tap-140g05.q1c.cand.22 - score = 31.54; uncharacterized protein	complement(join(53488..53797,53834..53952,54019..54123,54170..54334,54455..55015))	Theileria annulata	3865137
TA02675	CDS	TA02675	NC_011100.1	55085	57166	D	note; Tap-140g05.q1c.C.cand.3 - score = 34.85; SMART RPOLCX (SM0659) at aa 15-58, E()=5.93e-14; uncharacterized protein	join(55085..55145,55240..55332,55549..55736,55794..55880,55922..56094,56141..56451,56485..56633,56721..56861,56893..56934,57005..57166)	Theileria annulata	3865136
TA02670	CDS	TA02670	NC_011100.1	57250	58284	R	note; Tap-140g05.q1c.cand.21 - score = 22.05; uncharacterized protein	complement(57250..58284)	Theileria annulata	3865135
TA02665	CDS	TA02665	NC_011100.1	58611	59688	D	note; Tap-140g05.q1c.C.cand.4 - score = 22.84; SMART methyltransferase domains; methyltransferase (HUSSY homologue), putative	join(58611..58649,58683..58787,58822..58933,59003..59207,59246..59401,59433..59688)	Theileria annulata	3865134
TA02660	CDS	TA02660	NC_011100.1	59818	62337	R	note; Tap-140g05.q1c.cand.20 - score = 62.64; SMART pfam:Exo_endo_phos (PF03372) at aa 275-588, E()=2.30e-08; endonuclease, putative	complement(join(59818..59871,59902..59967,60017..60053,60109..60177,60212..60279,60372..60444,60476..60512,60581..60672,60722..60771,60861..60917,60948..60979,61021..61176,61250..61298,61366..62124,62176..62337))	Theileria annulata	3865133
TA02655	CDS	TA02655	NC_011100.1	62756	63745	D	note; Tap-140g05.q1c.C.cand.5 - score = 18.17; uncharacterized protein	62756..63745	Theileria annulata	3865132
TA02650	CDS	TA02650	NC_011100.1	63806	65114	R	note; Tap-140g05.q1c.cand.19 - score = 37.45; SMART DNAJ (SM0271) at aa 121-191, E()=2.82e-13; molecular chaperone, possible	complement(join(63806..63973,64032..64133,64168..64313,64349..64474,64559..64619,64652..64803,64835..65114))	Theileria annulata	3865131
TA02645	CDS	TA02645	NC_011100.1	65381	66008	R	note; Tap-140g05.q1c.cand.18 - score = 10.67; SMART UBCc (SM0212) at aa 10-140, E()=9.73e-05; ubiquitin-conjugating enzyme (MMS homologue), putative	complement(join(65381..65524,65567..65689,65742..65888,66000..66008))	Theileria annulata	3865130
TA02640	CDS	TA02640	NC_011100.1	66161	67030	R	note; Tap-140g05.q1c.cand.17 - score = 20.69; SMART CPDc (SM0577) at aa 61-203, E()=9.67e-53; RNA polymerase II carboxyterminal domain (CTD) phosphatase, putative	complement(join(66161..66637,66729..66809,66848..67030))	Theileria annulata	3865129
TA02635	CDS	TA02635	NC_011100.1	67580	68085	D	note; Tap-140g05.q1c.C.cand.6 - score = 7.66; SMART pfam:RNA_pol_L (PF01193) at aa 24-114, E()=2.90e-11; 1 probable transmembrane helix predicted for TA02635 by TMHMM2.0 at aa 104-123; DNA-directed RNA polymerase II, putative	join(67580..67653,67721..67810,67875..68085)	Theileria annulata	3865128
TA02630	CDS	TA02630	NC_011100.1	68495	71968	D	note; Tap-140g05.q1c.C.cand.7 - score = 68.68; uncharacterized protein	join(68495..70187,70350..70409,70441..70935,71015..71056,71088..71296,71329..71772,71873..71968)	Theileria annulata	3865127
TA02625	CDS	TA02625	NC_011100.1	72104	73351	R	note; Tap-140g05.q1c.cand.16 - score = 24.78; uncharacterized protein	complement(72104..73351)	Theileria annulata	3865126
TA02620	CDS	TA02620	NC_011100.1	74708	75481	D	note; Tap-140g05.q1c.C.cand.8 - score = 16.55; Signal peptide predicted for TA02620 by SignalP 2.0 HMM (Signal peptide probability 0.966, signal anchor probability 0.000) with cleavage site probability 0.769 between residues 16 and 17; uncharacterized protein	74708..75481	Theileria annulata	3865125
TA02615	CDS	TA02615	NC_011100.1	75756	76658	D	note; Tap-140g05.q1c.C.cand.9 - score = 9.03; uncharacterized protein	75756..76658	Theileria annulata	3865124
TA02610	CDS	TA02610	NC_011100.1	76742	78552	R	note; Tap-140g05.q1c.cand.15 - score = 24.26; SMART pfam:V-ATPase_H (PF03224) at aa 10-384, E()=1.50e-04; vacuolar ATP synthase subunit h, putative	complement(join(76742..76923,76993..77210,77297..77397,77428..77514,77596..77801,77855..77983,78049..78177,78279..78552))	Theileria annulata	3865123
TA02605	CDS	TA02605	NC_011100.1	78780	80280	R	note; Tap-140g05.q1c.cand.14 - score = 52.27; uncharacterized protein	complement(join(78780..79153,79210..79260,79290..79350,79423..79584,79615..79786,79816..79895,79962..80172,80210..80280))	Theileria annulata	3865122
TA02600	CDS	TA02600	NC_011100.1	80484	81706	D	note; Tap-140g05.q1c.C.cand.10 - score = 24.80; SMART 2 RRM (SM0360) at aa 51-125, E()=5.13e-12 and 250-312, E()=6.87e-01; U1 snRNP protein, putative	join(80484..80571,80631..80882,80954..81348,81401..81706)	Theileria annulata	3865121
TA02595	CDS	TA02595	NC_011100.1	81874	82544	R	note; Tap-140g05.q1c.cand.13 - score = 28.84; SMART S1 (SM0316) at aa 11-95, E()=1.73e+00; uncharacterized protein	complement(join(81874..81979,82010..82172,82223..82355,82428..82493,82524..82544))	Theileria annulata	3865120
TA02590	CDS	TA02590	NC_011100.1	82763	83845	R	note; Tap-140g05.q1c.cand.13 - score = 28.84; Signal peptide predicted for TA02590 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.000) with cleavage site probability 0.721 between residues 18 and 19; GPI-Anchor Signal predicted for TA02590 by DGPI v2.04 with cleavage site probability 0.172 near 339; uncharacterized protein	complement(82763..83845)	Theileria annulata	3865119
TA02585	CDS	TA02585	NC_011100.1	84218	84754	R	note; Tap-140g05.q1c.cand.12 - score = 16.66; Signal peptide predicted for TA02585 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.000) with cleavage site probability 0.721 between residues 18 and 19; GPI-Anchor Signal predicted for TA02585 by DGPI v2.04 with cleavage site probability 0.49879998 near 157; uncharacterized protein	complement(84218..84754)	Theileria annulata	3865118
TA02580	CDS	TA02580	NC_011100.1	84821	85885	R	note; Tap-140g05.q1c.cand.11 - score = 26.39; Signal peptide predicted for TA02580 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.824 between residues 19 and 20; GPI-Anchor Signal predicted for TA02580 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(84821..85885)	Theileria annulata	3865097
TA02575	CDS	TA02575	NC_011100.1	86798	88488	D	note; Tap-140g05.q1c.C.cand.11 - score = 30.75; uncharacterized protein	join(86798..86911,86942..87013,87044..87231,87327..87522,87617..88101,88197..88488)	Theileria annulata	3865096
TA02570	CDS	TA02570	NC_011100.1	88623	89386	R	note; Tap-140g05.q1c.cand.10 - score = 15.69; uncharacterized protein	complement(join(88623..88998,89094..89241,89275..89386))	Theileria annulata	3865095
TA02565	CDS	TA02565	NC_011100.1	89617	90573	R	note; Tap-140g05.q1c.cand.9 - score = 20.92; SMART 3 WD40 (SM0320) domains at aa 56-96, E()=9.51e+01; 149-197, E()=5.10e-06; 220-262, E()=2.38e+01; transport protein (SEC13 homologue), putative	complement(89617..90573)	Theileria annulata	3865094
TA02560	CDS	TA02560	NC_011100.1	90931	92666	D	note; Tap-140g05.q1c.C.cand.12 - score = 20.62; SMART 4 transmembrane domains at aa 265-287, 302-324, 358-376 and 391-413; 4 probable transmembrane helices predicted for TA02560 by TMHMM2.0 at aa 265-287, 302-324, 358-376 and 391-413; uncharacterized protein	join(90931..90949,91088..92304,92406..92666)	Theileria annulata	3865093
TA02555	CDS	TA02555	NC_011100.1	92812	93818	D	note; Tap-140g05.q1c.C.cand.13 - score = 19.72; 26S proteasome regulatory subunit, putative	join(92812..93096,93181..93513,93600..93818)	Theileria annulata	3865092
TA02550	CDS	TA02550	NC_011100.1	93868	95179	R	note; Tap-140g05.q1c.cand.8 - score = 26.68; SMART S_TKc (SM0220) at aa 15-319, E()=3.68e-81; glycogen synthase kinase, putative	complement(join(93868..94274,94349..94961,95036..95179))	Theileria annulata	3865091
TA02545	CDS	TA02545	NC_011100.1	96264	102463	D	note; Tap-140g05.q1c.C.cand.14 - score = 105.54; SMART pfam:CSPase_sm_chain (PF00988) at aa 19-180, E()=8.50e-63; pfam:GATase (PF00117) at aa 293-472, E()=3.50e-29; 2 pfam:CSPase_L_chain (PF00289) at aa 503-623, E()=1.40e-51; 1136-1250, E()=1.90e-12; pfam:CPSase_L_D2 (PF02786) at aa 625-865, E()=6.90e-112; pfam:CPSase_L_D3 (PF02787) at aa 943-1082, E()=8.50e-43; pfam:Dala_Dala_ligas (PF01820) at aa 1148-1448, E()=2.00e-02; pfam:MGS (PF2141) at aa 1521-1661, E()=9.20e-03; carbamoyl phosphate synthase II, putative	join(96264..96303,96529..96773,96887..97862,97937..98254,98342..98602,98655..98828,98891..98985,99049..99625,99654..100379,100493..100771,100859..101108,101174..101711,101840..102463)	Theileria annulata	3865090
TA02540	CDS	TA02540	NC_011100.1	102898	103923	D	note; Tap-140g05.q1c.C.cand.15 - score = 19.25; SMART pfam:NUDIX (PF00293) at aa 104-231, E()=9.70e-14; uncharacterized protein	102898..103923	Theileria annulata	3865089
TA02535	CDS	TA02535	NC_011100.1	104360	105038	D	note; Tap-140g05.q1c.C.cand.16 - score = 11.10; 60S ribosomal L24 protein, putative	join(104360..104539,104650..104802,104904..105038)	Theileria annulata	3865088
TA02530	CDS	TA02530	NC_011100.1	105224	105843	R	note; Tap-140g05.q1c.cand.7 - score = 15.68; uncharacterized protein	complement(join(105224..105726,105780..105843))	Theileria annulata	3865087
TA02525	CDS	TA02525	NC_011100.1	106275	106652	R	SMART pfam:Ribosomal_S27e (PF01667) at aa 26-80, E()=6.30e-26; 40S ribosomal protein S27, putative	complement(join(106275..106356,106486..106652))	Theileria annulata	3865086
TA02520	CDS	TA02520	NC_011100.1	108128	109809	R	note; Tap-140g05.q1c.cand.6 - score = 25.76; uncharacterized protein	complement(join(108128..108579,108696..109809))	Theileria annulata	3865085
TA02515	CDS	TA02515	NC_011100.1	109935	111811	R	note; Tap-140g05.q1c.cand.5 - score = 43.61; uncharacterized protein	complement(join(109935..110274,110328..111100,111174..111275,111347..111811))	Theileria annulata	3865084
TA02510	CDS	TA02510	NC_011100.1	112231	114545	R	Tap-140g05.q1c.cand.5 - score = 43.61; SMART pfam:asp (PF00026) at aa 89-485, E()=1.50e-66; 1 probable transmembrane helix predicted for TA02510 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA02510 by SignalP 2.0 HMM (Signal peptide probability 0.650, signal anchor probability 0.310) with cleavage site probability 0.488 between residues 25 and 26; aspartyl protease precursor, putative	complement(join(112231..112766,112830..112915,112949..113001,113079..113235,113270..113309,113384..113508,113927..113979,114015..114545))	Theileria annulata	3865083
TA02505	CDS	TA02505	NC_011100.1	115036	116355	D	note; Tap-140g05.q1c.C.cand.17 - score = 21.11; 1 probable transmembrane helix predicted for TA02505 by TMHMM2.0 at aa 7-29; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative	115036..116355	Theileria annulata	3865082
TA02500	CDS	TA02500	NC_011100.1	116746	117808	D	note; Tap-140g05.q1c.C.cand.18 - score = 19.46; SMART 4 EFh (SM0054) domains at aa 35-63, E()=1.24e-06; 71-99, E()=9.11e-05; 108-136, E()=8.25e+00; 144-712, E()=1.42e-06; centrin, putative	join(116746..116890,117044..117111,117150..117236,117340..117420,117488..117547,117722..117808)	Theileria annulata	3865081
TA02495	CDS	TA02495	NC_011100.1	118251	121631	D	note; Tap-140g05.q1c.C.cand.19 - score = 170.27; uncharacterized protein	118251..121631	Theileria annulata	3865080
TA02490	CDS	TA02490	NC_011100.1	122818	125941	D	Tap-140g05.q1c.C.cand.19 - score = 170.27; ribosome biogenesis protein (BMS1 homologue), putative	join(122818..123275,123309..123776,123842..124717,124748..124855,124903..124982,125065..125633,125666..125941)	Theileria annulata	3865079
TA02485	CDS	TA02485	NC_011100.1	126075	127496	R	note; Tap-140g05.q1c.cand.2 - score = 18.79; SMART pfam:sugar_tr (PF00083) at aa 12-472, E()=4.60e-62; 12 probable transmembrane helices predicted for TA02485 by TMHMM2.0 at aa 7-29, 58-80, 92-114, 119-138, 145-167, 193-215, 278-300, 315-337, 344-362, 377-399, 412-434 and 438-460; Signal peptide predicted for TA02485 by SignalP 2.0 HMM (Signal peptide probability 0.974, signal anchor probability 0.022) with cleavage site probability 0.648 between residues 28 and 29; hexose transporter (HT1 homologue), putative	complement(126075..127496)	Theileria annulata	3864752
TA02480	CDS	TA02480	NC_011100.1	128013	129434	R	note; Tap-140g05.q1c.cand.1 - score = 21.12; SMART pfam:sugar_tr (PF00083) at aa 12-472, E()=1.10e-59; 12 probable transmembrane helices predicted for TA02480 by TMHMM2.0 at aa 13-32, 58-80, 92-114, 119-138, 145-167, 193-215, 278-300, 315-337, 344-362, 377-399, 412-434 and 438-460; Signal peptide predicted for TA02480 by SignalP 2.0 HMM (Signal peptide probability 0.831, signal anchor probability 0.147) with cleavage site probability 0.375 between residues 28 and 29; hexose transporter (HT1 homologue), putative	complement(128013..129434)	Theileria annulata	3864751
TA03170	CDS	TA03170	NC_011100.1	133188	134585	D	Tap-24g11.q1c.cand.1 - score = 15.00; 6 probable transmembrane helices predicted for TA03170 by TMHMM2.0 at aa 80-102, 117-137, 144-166, 202-224, 330-352 and 362-379; uncharacterized protein	133188..134585	Theileria annulata	3864975
TA03175	CDS	TA03175	NC_011100.1	134615	137033	R	note; Tap-24g11.q1c.C.cand.235 - score = 58.41; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03175 by SignalP 2.0 HMM (Signal peptide probability 0.982, signal anchor probability 0.000) with cleavage site probability 0.529 between residues 19 and 20; cysteinyl-tRNA synthetase, putative	complement(join(134615..134893,134923..134986,135015..135178,135217..135324,135355..135513,135555..135738,135768..136053,136086..136405,136436..136509,136544..136735,136779..137033))	Theileria annulata	3864976
TA03180	CDS	TA03180	NC_011100.1	137845	139725	D	note; Tap-24g11.q1c.cand.2 - score = 40.16; uncharacterized protein	join(137845..137998,138030..138199,138236..138385,138417..138908,138939..139102,139281..139342,139377..139418,139450..139505,139537..139725)	Theileria annulata	3864977
TA03185	CDS	TA03185	NC_011100.1	140064	140518	D	note; Tap-24g11.q1c.cand.3 - score = 13.88; 1 probable transmembrane helix predicted for TA03185 by TMHMM2.0 at aa 76-93; uncharacterized protein	join(140064..140129,140222..140518)	Theileria annulata	3864978
TA03190	CDS	TA03190	NC_011100.1	141218	141984	D	note; Tap-24g11.q1c.cand.4 - score = 13.32; uncharacterized protein	join(141218..141269,141320..141400,141432..141628,141769..141984)	Theileria annulata	3864979
TA03195	CDS	TA03195	NC_011100.1	142212	143060	D	note; Tap-24g11.q1c.cand.5 - score = 23.14; uncharacterized protein	142212..143060	Theileria annulata	3864980
TA03200	CDS	TA03200	NC_011100.1	143322	145321	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03200 by SignalP 2.0 HMM (Signal peptide probabilty 0.974, signal anchor probability 0.000) with cleavage site probability 0.596 between residues 16 and 17; uncharacterized protein	join(143322..143411,143442..143559,143611..144020,144080..144206,144280..144383,144430..144563,144612..144899,145022..145115,145145..145321)	Theileria annulata	3864981
TA03205	CDS	TA03205	NC_011100.1	145445	146053	R	note; Tap-24g11.q1c.C.cand.234 - score = 16.31; uncharacterized protein	complement(145445..146053)	Theileria annulata	3865187
TA03210	CDS	TA03210	NC_011100.1	146638	147216	D	note; Signal peptide predicted for TA03210 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.988 between residues 17 and 18; uncharacterized protein	146638..147216	Theileria annulata	3865188
TA03265	CDS	TA03265	NC_011100.1	147302	148257	R	note; Tap-24g11.q1c.C.cand.233 - score = 20.48; extensin (proline-rich protein), putative	complement(join(147302..147455,147489..148044,148140..148257))	Theileria annulata	3865199
TA03270	CDS	TA03270	NC_011100.1	148448	149167	D	note; Tap-24g11.q1c.cand.9 - score = 18.68; uncharacterized protein	join(148448..148537,148618..148734,148766..148810,148840..148903,148968..149167)	Theileria annulata	3865200
TA03375	CDS	TA03375	NC_011100.1	149308	151929	R	note; spliceosome-associated factor, putative	complement(join(149308..149858,150000..150147,150206..151099,151345..151643,151683..151929))	Theileria annulata	3865338
TA03430	CDS	TA03430	NC_011100.1	152136	155328	R	note; Tap-24g11.q1c.C.cand.230 - score = 12.58; Fumarate hydratase class I, putative	complement(join(152136..152488,152790..152984,153064..153225,153676..153778,153808..153941,154040..154139,154344..154509,154673..155328))	Theileria annulata	3864620
TA03435	CDS	TA03435	NC_011100.1	156278	159421	D	note; Tap-24g11.q1c.cand.10 - score = 12.58; 9 probable transmembrane helices predicted for TA03435 by TMHMM2.0 at aa 7-29, 96-118, 194-216, 399-418, 438-460, 480-502, 507-529, 539-561 and 673-695; uncharacterized protein	join(156278..156509,156680..156958,157269..159002,159372..159421)	Theileria annulata	3864621
TA03540	CDS	TA03540	NC_011100.1	159457	160047	R	note; Tap-24g11.q1c.C.cand.229 - score = 13.66; Signal peptide predicted for TA03540 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.953 between residues 17 and 18; uncharacterized protein	complement(159457..160047)	Theileria annulata	3865010
TA03595	CDS	TA03595	NC_011100.1	160786	161310	R	note; Tap-24g11.q1c.C.cand.228 - score = 18.45; uncharacterized protein	complement(160786..161310)	Theileria annulata	3864851
TA03650	CDS	TA03650	NC_011100.1	163140	166386	R	note; Tap-24g11.q1c.C.cand.227 - score = 63.03; uncharacterized protein	complement(join(163140..163558,163590..166386))	Theileria annulata	3864862
TA03705	CDS	TA03705	NC_011100.1	166858	167709	R	note; Tap-24g11.q1c.C.cand.226 - score = 20.08; uncharacterized protein	complement(166858..167709)	Theileria annulata	3864598
TA03710	CDS	TA03710	NC_011100.1	168197	169321	D	note; Tap-24g11.q1c.cand.11 - score = 19.71; uncharacterized protein	168197..169321	Theileria annulata	3864599
TA03765	CDS	TA03765	NC_011100.1	170059	172548	D	note; Tap-24g11.q1c.cand.12 - score = 40.59; glutamate-cysteine ligase, putative	join(170059..172150,172253..172548)	Theileria annulata	3864610
TA03820	CDS	TA03820	NC_011100.1	172779	174485	D	note; Tap-24g11.q1c.cand.13 - score = 18.25; uncharacterized protein	join(172779..173210,173901..174485)	Theileria annulata	3864837
TA03875	CDS	TA03875	NC_011100.1	176832	177899	D	note; Tap-24g11.q1c.cand.14 - score = 9.29; 1 probable transmembrane helix predicted for TA03875 by TMHMM2.0 at aa 153-175; RNA poly(A)-binding protein, putative	join(176832..176888,177042..177128,177263..177369,177505..177592,177708..177899)	Theileria annulata	3864848
TA03930	CDS	TA03930	NC_011100.1	178947	179870	D	note; Tap-24g11.q1c.cand.15 - score = 17.09; uncharacterized protein	178947..179870	Theileria annulata	3864781
TA03985	CDS	TA03985	NC_011100.1	180883	182083	D	note; Tap-24g11.q1c.cand.16 - score = 10.29; lipoate protein ligase, putative	join(180883..181069,181206..182083)	Theileria annulata	3865208
TA04090	CDS	TA04090	NC_011100.1	182826	187112	R	note; Tap-24g11.q1c.C.cand.225 - score = 69.25; 3 probable transmembrane helices predicted for TA04090 by TMHMM2.0 at aa 7-25, 528-550 and 563-585; cytochrome reductase, putative	complement(join(182826..183139,183297..183642,183825..184087,184281..184350,184368..184526,185563..185720,185807..185952,186221..186369,186400..186507,186843..186976,187016..187112))	Theileria annulata	3865386
TA04145	CDS	TA04145	NC_011100.1	187209	191292	R	note; Tap-24g11.q1c.C.cand.225 - score = 69.25; 0506. Phat adopted as slightly better fasta results; uncharacterized protein	complement(join(187209..187526,187724..188840,189251..191292))	Theileria annulata	3865397
TA04150	CDS	TA04150	NC_011100.1	192204	193041	D	note; Tap-24g11.q1c.cand.17 - score = 14.96; uncharacterized protein	join(192204..192314,192466..192694,192755..193041)	Theileria annulata	3865398
TA04205	CDS	TA04205	NC_011100.1	198323	201029	D	note; Tap-24g11.q1c.cand.19 - score = 8.55; RhoGAP protein, putative	join(198323..198438,198545..198771,199182..199481,199676..200172,200667..201029)	Theileria annulata	3865029
TA04310	CDS	TA04310	NC_011100.1	201574	204294	R	note; Tap-24g11.q1c.C.cand.224 - score = 6.85; 4-methyl-5(b-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme, putative	complement(join(201574..201666,202098..202216,202518..202743,203029..203232,204172..204294))	Theileria annulata	3864801
TA04315	CDS	TA04315	NC_011100.1	205386	208364	D	note; Tap-24g11.q1c.cand.22 - score = 34.00; uncharacterized protein	join(205386..206405,206713..206986,207283..208364)	Theileria annulata	3864802
TA04420	CDS	TA04420	NC_011100.1	209351	209956	R	note; Tap-24g11.q1c.C.cand.223 - score = 15.57; uncharacterized protein	complement(209351..209956)	Theileria annulata	3865239
TA04425	CDS	TA04425	NC_011100.1	210165	211313	D	note; Tap-24g11.q1c.cand.23 - score = 6.87; ribosomal protein L18, putative	join(210165..210314,210400..210676,211165..211313)	Theileria annulata	3865240
TA04480	CDS	TA04480	NC_011100.1	211671	214340	D	uncharacterized protein	211671..214340	Theileria annulata	3865270
TA04585	CDS	TA04585	NC_011100.1	215434	217485	R	note; Tap-24g11.q1c.C.cand.222 - score = 27.91; syntaxin binding protein 2, putative	complement(215434..217485)	Theileria annulata	3864895
TA04640	CDS	TA04640	NC_011100.1	218746	222084	R	note; Tap-24g11.q1c.C.cand.221 - score = 49.38; 13 probable transmembrane helices predicted for TA04640 by TMHMM2.0 at aa 52-74, 89-111, 132-154, 159-181, 188-207, 222-244, 251-270, 275-297, 304-326, 485-504, 590-608, 613-630 and 637-656; uncharacterized protein	complement(218746..222084)	Theileria annulata	3864906
TA04645	CDS	TA04645	NC_011100.1	222622	227578	D	thioredoxin reductase, putative	join(222622..223030,223089..223297,223847..223984,224453..224583,224692..224758,224962..225108,225593..225674,225851..226035,226169..226249,227114..227210,227310..227578)	Theileria annulata	3864907
TA04700	CDS	TA04700	NC_011100.1	227703	231039	D	uncharacterized protein	join(227703..228363,229135..230561,230926..231039)	Theileria annulata	3865371
TA04805	CDS	TA04805	NC_011100.1	231329	231881	R	uncharacterized protein	complement(join(231329..231777,231806..231881))	Theileria annulata	3865296
TA04860	CDS	TA04860	NC_011100.1	233254	234741	R	note; Tap-24g11.q1c.C.cand.219 - score = 25.13; uncharacterized protein	complement(join(233254..233658,233767..234235,234266..234540,234574..234741))	Theileria annulata	3864930
TA04915	CDS	TA04915	NC_011100.1	234837	236783	R	note; Tap-24g11.q1c.C.cand.218 - score = 29.59; 10 probable transmembrane helices predicted for TA04915 by TMHMM2.0 at aa 13-35, 48-70, 224-246, 256-278, 285-307, 322-344, 383-405, 478-500, 521-543 and 547-569; Tpr-related protein family member, putative	complement(234837..236783)	Theileria annulata	3864941
TA04970	CDS	TA04970	NC_011100.1	236908	238338	R	note; Tap-24g11.q1c.C.cand.217 - score = 17.92; 11 probable transmembrane helices predicted for TA04970 by TMHMM2.0 at aa 24-46, 75-97, 129-151, 163-185, 190-212, 225-247, 280-302, 315-334, 354-376, 397-419 and 424-446; Tpr-related protein family member, putative	complement(236908..238338)	Theileria annulata	3864696
TA04975	CDS	TA04975	NC_011100.1	238991	239264	D	note; Tap-24g11.q1c.cand.27 - score = 12.87; uncharacterized protein	join(238991..239025,239055..239169,239199..239264)	Theileria annulata	3864697
TA05080	CDS	TA05080	NC_011100.1	239338	240032	R	ADP-ribosylation factor, putative	complement(join(239338..239469,239503..239583,239614..239776,239808..239918,239968..240032))	Theileria annulata	3864738
TA05135	CDS	TA05135	NC_011100.1	240287	242416	R	note; Tap-24g11.q1c.C.cand.216 - score = 30.30; 11 probable transmembrane helices predicted for TA05135 by TMHMM2.0 at aa 32-51, 66-88, 116-138, 142-164, 185-207, 217-236, 289-311, 326-348, 361-383, 387-409 and 626-648; GPI-Anchor Signal predicted for TA05135 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(240287..242097,242240..242363,242393..242416))	Theileria annulata	3864749
TA05140	CDS	TA05140	NC_011100.1	242435	243308	D	note; Tap-24g11.q1c.cand.29 - score = 11.70; uncharacterized protein	join(242435..242848,242881..242925,243021..243308)	Theileria annulata	3864750
TA05195	CDS	TA05195	NC_011100.1	243336	245777	D	note; Tap-24g11.q1c.cand.30 - score = 37.26; 2 probable transmembrane helices predicted for TA05195 by TMHMM2.0 at aa 76-98 and 701-723; uncharacterized protein	243336..245777	Theileria annulata	3864565
TA05260	CDS	TA05260	NC_011100.1	245823	246224	R	note; Tap-24g11.q1c.C.cand.215 - score = 10.74; uncharacterized protein	complement(245823..246224)	Theileria annulata	3864873
TA05265	CDS	TA05265	NC_011100.1	246455	248591	R	note; Tap-24g11.q1c.C.cand.214 - score = 39.09; 1 probable transmembrane helix predicted for TA05265 by TMHMM2.0 at aa 139-161; uncharacterized protein	complement(join(246455..246812,246949..248591))	Theileria annulata	3864874
TA05270	CDS	TA05270	NC_011100.1	248678	250166	D	note; Tap-24g11.q1c.cand.31 - score = 28.53; uncharacterized protein	join(248678..249685,249739..249858,249891..250166)	Theileria annulata	3864875
TA05275	CDS	TA05275	NC_011100.1	250587	254032	R	note; Tap-24g11.q1c.C.cand.213 - score = 92.63; 2-oxoglutarate dehydrogenase E1 component, putative	complement(join(250587..251313,251347..251599,251630..252425,252473..252540,252571..252877,252942..253140,253191..253477,253512..253654,253689..253764,253823..254032))	Theileria annulata	3864876
TA05280	CDS	TA05280	NC_011100.1	254269	254833	R	note; Tap-24g11.q1c.C.cand.212 - score = 10.81; 4 probable transmembrane helices predicted for TA05280 by TMHMM2.0 at aa 21-43, 53-75, 82-104 and 124-146; uncharacterized protein	complement(join(254269..254508,254540..254833))	Theileria annulata	3864877
TA05285	CDS	TA05285	NC_011100.1	255470	256471	D	note; Tap-24g11.q1c.cand.32 - score = 22.69; uncharacterized protein	255470..256471	Theileria annulata	3864878
TA05290	CDS	TA05290	NC_011100.1	256918	257421	D	There is small overlap at the 3' end with gene TA05295; 1 probable transmembrane helix predicted for TA05290 by TMHMM2.0 at aa 143-165; uncharacterized protein	256918..257421	Theileria annulata	3864879
TA05295	CDS	TA05295	NC_011100.1	257401	261650	R	There is small overlap at the 3' end with gene TA05290; global transcription activator, SNF2 family member, putative	complement(join(257401..258098,258252..258767,258821..258965,259049..259176,259233..259417,259657..259893,259999..260114,260187..261650))	Theileria annulata	3864880
TA05300	CDS	TA05300	NC_011100.1	261876	263079	R	note; Tap-24g11.q1c.C.cand.209 - score = 23.07; polyphosphoinositol binding protein, putative	complement(join(261876..261991,262023..262401,262509..262823,262951..263079))	Theileria annulata	3864881
TA05305	CDS	TA05305	NC_011100.1	264036	264457	R	note; Tap-24g11.q1c.C.cand.208 - score = 15.41; uncharacterized protein	complement(join(264036..264162,264202..264338,264371..264457))	Theileria annulata	3864882
TA05310	CDS	TA05310	NC_011100.1	264567	265998	D	uncharacterized protein	join(264567..264669,264758..264912,264945..265058,265107..265267,265299..265998)	Theileria annulata	3864883
TA05315	CDS	TA05315	NC_011100.1	267811	268383	D	note; Tap-24g11.q1c.cand.35 - score = 12.42; Signal peptide predicted for TA05315 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.000) with cleavage site probability 0.427 between residues 19 and 20; GPI-Anchor Signal predicted for TA05315 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	267811..268383	Theileria annulata	3864884
TA05320	CDS	TA05320	NC_011100.1	268939	269502	D	note; Tap-24g11.q1c.cand.36 - score = 24.03; Signal peptide predicted for TA05320 by SignalP 2.0 HMM (Signal peptide probability 0.994, signal anchor probability 0.000) with cleavage site probability 0.689 between residues 18 and 19; GPI-Anchor Signal predicted for TA05320 by DGPI v2.04 with cleavage site probability 0.74819994 near 169; uncharacterized protein	268939..269502	Theileria annulata	3864885
TA05325	CDS	TA05325	NC_011100.1	269766	272529	D	note; Tap-24g11.q1c.cand.37 - score = 67.43; methionyl-tRNA synthetase, putative	join(269766..270015,270063..270414,270477..272529)	Theileria annulata	3864886
TA05330	CDS	TA05330	NC_011100.1	272891	274999	D	note; Tap-24g11.q1c.cand.38 - score = 55.84; uncharacterized protein	join(272891..273002,273102..273226,273321..273519,273569..273645,273677..274106,274139..274182,274216..274536,274623..274767,274875..274999)	Theileria annulata	3864887
TA05335	CDS	TA05335	NC_011100.1	275119	277065	D	note; Tap-24g11.q1c.cand.39 - score = 41.27; protein kinase, putative	275119..277065	Theileria annulata	3864888
TA05340	CDS	TA05340	NC_011100.1	277661	278800	D	note; Tap-24g11.q1c.cand.40 - score = 18.77; uncharacterized protein	join(277661..277819,277905..278142,278345..278640,278705..278800)	Theileria annulata	3865098
TA05345	CDS	TA05345	NC_011100.1	279091	280342	R	note; Tap-24g11.q1c.C.cand.207 - score = 22.99; arsenical pump-driving ATPase, putative	complement(join(279091..279207,279239..279463,279513..279817,279922..279952,280035..280142,280172..280342))	Theileria annulata	3865099
TA05350	CDS	TA05350	NC_011100.1	280467	282734	D	note; Tap-24g11.q1c.cand.41 - score = 32.51; uncharacterized protein	join(280467..280617,280702..282734)	Theileria annulata	3865100
TA05355	CDS	TA05355	NC_011100.1	282906	288230	D	note; Tap-24g11.q1c.cand.42 - score = 116.66; uncharacterized protein	join(282906..283329,283411..288230)	Theileria annulata	3865101
TA05360	CDS	TA05360	NC_011100.1	288555	289346	D	note; Tap-24g11.q1c.cand.43 - score = 22.11; synaptobrevin, putative	join(288555..288667,288700..288772,288802..288876,288908..288997,289029..289113,289144..289346)	Theileria annulata	3865102
TA05365	CDS	TA05365	NC_011100.1	289824	292906	D	note; Tap-24g11.q1c.cand.44 - score = 101.99; alpha-adaptin, putative	join(289824..291014,291079..291348,291406..291473,291535..292615,292697..292785,292816..292906)	Theileria annulata	3865103
TA05370	CDS	TA05370	NC_011100.1	293270	294763	D	note; Tap-24g11.q1c.cand.44 - score = 101.99; uncharacterized protein	293270..294763	Theileria annulata	3865104
TA05375	CDS	TA05375	NC_011100.1	295072	298944	D	note; Tap-24g11.q1c.cand.45 - score = 90.92; Signal peptide predicted for TA05375 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.000) with cleavage site probability 0.866 between residues 21 and 22; uncharacterized protein	295072..298944	Theileria annulata	3865105
TA05380	CDS	TA05380	NC_011100.1	299442	301118	D	note; Tap-24g11.q1c.cand.46 - score = 35.59; uncharacterized protein	299442..301118	Theileria annulata	3865106
TA05385	CDS	TA05385	NC_011100.1	301675	302138	D	note; Tap-24g11.q1c.cand.47 - score = 13.69; uncharacterized protein	join(301675..301866,301920..302138)	Theileria annulata	3865107
TA05390	CDS	TA05390	NC_011100.1	302764	303315	D	note; Tap-24g11.q1c.cand.48 - score = 17.12; 1 probable transmembrane helix predicted for TA05390 by TMHMM2.0 at aa 2-21; Signal peptide predicted for TA05390 by SignalP 2.0 HMM (Signal peptide probability 0.895, signal anchor probability 0.009) with cleavage site probability 0.447 between residues 21 and 22; uncharacterized protein	302764..303315	Theileria annulata	3865108
TA05395	CDS	TA05395	NC_011100.1	304129	304539	D	note; Tap-24g11.q1c.cand.49 - score = 12.61; histone H3, putative	304129..304539	Theileria annulata	3865109
TA05400	CDS	TA05400	NC_011100.1	305050	307350	D	note; Tap-24g11.q1c.cand.50 - score = 63.99; 3 probable transmembrane helices predicted for TA05400 by TMHMM2.0 at aa 649-668, 689-711 and 726-748; uncharacterized protein	305050..307350	Theileria annulata	3865110
TA05405	CDS	TA05405	NC_011100.1	307610	308177	D	note; Tap-24g11.q1c.cand.51 - score = 12.73; 1 probable transmembrane helix predicted for TA05405 by TMHMM2.0 at aa 156-178; uncharacterized protein	join(307610..307936,307965..308177)	Theileria annulata	3865111
TA05410	CDS	TA05410	NC_011100.1	308318	309158	R	note; Tap-24g11.q1c.C.cand.206 - score = 22.44; uncharacterized protein	complement(join(308318..308415,308475..308640,308705..308942,308991..309045,309101..309158))	Theileria annulata	3865112
TA05415	CDS	TA05415	NC_011100.1	309465	311581	D	note; Tap-24g11.q1c.cand.52 - score = 16.09; 6 probable transmembrane helices predicted for TA05415 by TMHMM2.0 at aa 184-206, 211-229, 249-271, 284-306, 327-349 and 359-378; uncharacterized protein	join(309465..309869,310157..310210,310479..310539,310580..310900,310953..311060,311358..311581)	Theileria annulata	3865113
TA05420	CDS	TA05420	NC_011100.1	311828	313255	R	note; Tap-24g11.q1c.C.cand.205 - score = 38.15; uncharacterized protein	complement(join(311828..312037,312067..312208,312274..312393,312429..312457,312515..313255))	Theileria annulata	3865114
TA05425	CDS	TA05425	NC_011100.1	313474	314850	R	note; Tap-24g11.q1c.C.cand.204 - score = 62.02; uncharacterized protein	complement(313474..314850)	Theileria annulata	3865115
TA05430	CDS	TA05430	NC_011100.1	314902	316436	R	note; Tap-24g11.q1c.C.cand.204 - score = 62.02; adenosylhomocysteinase, putative	complement(join(314902..316031,316097..316436))	Theileria annulata	3865116
TA05435	CDS	TA05435	NC_011100.1	317598	318995	D	note; Tap-24g11.q1c.cand.53 - score = 23.52; uncharacterized protein	join(317598..318833,318912..318995)	Theileria annulata	3865117
TA05440	CDS	TA05440	NC_011100.1	319270	320646	R	note; Tap-24g11.q1c.C.cand.203 - score = 35.28; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05440 by SignalP 2.0 HMM (Signal peptide probability 0.939, signal anchor probability 0.035) with cleavage site probability 0.577 between residues 26 and 27; endonuclease III, putative	complement(join(319270..319410,319458..319817,319857..320374,320532..320646))	Theileria annulata	3864673
TA05445	CDS	TA05445	NC_011100.1	321175	321711	D	note; Tap-24g11.q1c.cand.54 - score = 12.13; 60S ribosomal protein L19, putative	321175..321711	Theileria annulata	3864674
TA05450	CDS	TA05450	NC_011100.1	321822	323853	R	note; Tap-24g11.q1c.C.cand.202 - score = 40.82; nuclear-architecture-related protein (NARF) or Fe-hydrogenase, putative	complement(join(321822..322361,322393..323853))	Theileria annulata	3864675
TA05455	CDS	TA05455	NC_011100.1	324983	330525	D	note; Tap-24g11.q1c.cand.55 - score = 116.92; 9 probable transmembrane helices predicted for TA05455 by TMHMM2.0 at aa 73-92, 156-178, 191-213, 358-380, 449-471, 974-996, 1028-1050, 1109-1126 and 1133-1155; ABC transporter, putative	join(324983..325565,325632..327062,327158..328174,328245..328570,328654..328757,328831..329299,329366..329681,329782..330430,330462..330525)	Theileria annulata	3864676
TA05460	CDS	TA05460	NC_011100.1	330660	331287	D	note; Tap-24g11.q1c.cand.56 - score = 10.66; uncharacterized protein	join(330660..330815,330846..330975,331086..331184,331244..331287)	Theileria annulata	3864677
TA05465	CDS	TA05465	NC_011100.1	331440	339745	D	note; Tap-24g11.q1c.cand.57 - score = 172.47; 3 probable transmembrane helices predicted for TA05465 by TMHMM2.0 at aa 144-166, 229-251 and 2538-2555; uncharacterized protein	join(331440..331803,332156..334270,334343..336265,336363..339745)	Theileria annulata	3864678
TA05470	CDS	TA05470	NC_011100.1	340098	340817	D	note; Tap-24g11.q1c.cand.58 - score = 18.59; uncharacterized protein	340098..340817	Theileria annulata	3864679
TA05475	CDS	TA05475	NC_011100.1	341010	348225	D	note; Tap-24g11.q1c.cand.59 - score = 108.02; uncharacterized protein	join(341010..341508,341577..342344,342389..342509,342567..348225)	Theileria annulata	3864680
TA05480	CDS	TA05480	NC_011100.1	348547	350976	R	uncharacterized protein	complement(join(348547..348831,348864..348971,349003..349092,349137..349249,349293..349358,349400..349754,349834..350000,350081..350466,350524..350662,350694..350976))	Theileria annulata	3864681
TA05485	CDS	TA05485	NC_011100.1	351374	355003	D	note; Tap-24g11.q1c.cand.60 - score = 57.35; uncharacterized protein	join(351374..351555,351593..351809,351858..352071,352136..352288,352434..352512,352572..352825,352857..354019,354066..354203,354265..354569,354644..354833,354875..355003)	Theileria annulata	3864682
TA05490	CDS	TA05490	NC_011100.1	355193	356338	R	note; Tap-24g11.q1c.C.cand.200 - score = 16.47; Tap-24g11.q1c.C.cand.199 - score = 8.31; uncharacterized protein	complement(join(355193..355278,355345..355478,355510..355553,355688..355699,355818..355956,356002..356124,356193..356338))	Theileria annulata	3864683
TA05495	CDS	TA05495	NC_011100.1	356935	357930	D	note; Tap-24g11.q1c.cand.61 - score = 32.80; 2 probable transmembrane helices predicted for TA05495 by TMHMM2.0 at aa 5-27 and 241-260; Signal peptide predicted for TA05495 by SignalP 2.0 HMM (Signal peptide probability 0.946, signal anchor probability 0.000) with cleavage site probability 0.559 between residues 24 and 25; uncharacterized protein	join(356935..357619,357692..357930)	Theileria annulata	3864684
TA05500	CDS	TA05500	NC_011100.1	358299	358970	D	note; Tap-24g11.q1c.cand.62 - score = 10.83; adenylyl-cyclase-associated protein, putative	join(358299..358308,358480..358970)	Theileria annulata	3864685
TA05505	CDS	TA05505	NC_011100.1	359299	360461	R	note; Tap-24g11.q1c.C.cand.198 - score = 16.12; 1 probable transmembrane helix predicted for TA05505 by TMHMM2.0 at aa 60-82; uncharacterized protein	complement(join(359299..359471,359506..359740,359786..359912,360250..360461))	Theileria annulata	3864686
TA05510	CDS	TA05510	NC_011100.1	360493	361958	R	note; Tap-24g11.q1c.C.cand.197 - score = 21.66; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA05510 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA05510 by SignalP 2.0 HMM (Signal peptide probability 0.941, signal anchor probability 0.011) with cleavage site probability 0.372 between residues 25 and 26; uncharacterized protein	complement(join(360493..360681,360741..361008,361102..361387,361453..361578,361679..361958))	Theileria annulata	3864687
TA05515	CDS	TA05515	NC_011100.1	362165	364312	R	note; Tap-24g11.q1c.C.cand.196 - score = 58.07; ankyrin-repeat protein, putative	complement(362165..364312)	Theileria annulata	3864688
TA05520	CDS	TA05520	NC_011100.1	365013	366064	R	note; Tap-24g11.q1c.C.cand.195 - score = 62.36; uncharacterized protein	complement(join(365013..365620,365702..365813,365882..366064))	Theileria annulata	3864689
TA03215	CDS	TA03215	NC_011100.1	366301	368630	R	note; Tap-24g11.q1c.C.cand.195 - score = 62.36; 1 probable transmembrane helix predicted for TA03215 by TMHMM2.0 at aa 744-766; uncharacterized protein	complement(join(366301..368444,368471..368630))	Theileria annulata	3865189
TA03220	CDS	TA03220	NC_011100.1	368895	370564	R	note; Tap-24g11.q1c.C.cand.194 - score = 24.53; 11 probable transmembrane helices predicted for TA03220 by TMHMM2.0 at aa 29-51, 124-146, 156-178, 198-217, 227-249, 280-299, 319-341, 362-381, 391-410, 417-439 and 464-483; uncharacterized protein	complement(join(368895..369007,369043..370564))	Theileria annulata	3865190
TA03225	CDS	TA03225	NC_011100.1	370781	372904	R	note; Tap-24g11.q1c.C.cand.193 - score = 56.99; T-complex polypeptide 1, putative	complement(join(370781..370984,371041..371184,371221..371417,371480..371614,371665..371840,371919..372337,372386..372508,372579..372769,372847..372904))	Theileria annulata	3865191
TA03230	CDS	TA03230	NC_011100.1	373695	375248	R	note; Tap-24g11.q1c.C.cand.192 - score = 37.16; 2 probable transmembrane helices predicted for TA03230 by TMHMM2.0 at aa 99-121 and 386-408; uncharacterized protein	complement(join(373695..373840,373874..373942,373972..374242,374306..374631,374672..375248))	Theileria annulata	3865192
TA03235	CDS	TA03235	NC_011100.1	375650	380686	R	note; Tap-24g11.q1c.C.cand.191 - score = 115.84; DNA-directed RNA polymerase II largest subunit, putative	complement(375650..380686)	Theileria annulata	3865193
TA03240	CDS	TA03240	NC_011100.1	380893	381737	R	note; Tap-24g11.q1c.C.cand.190 - score = 14.41; uncharacterized protein	complement(join(380893..380975,381052..381210,381273..381489,381660..381737))	Theileria annulata	3865194
TA03245	CDS	TA03245	NC_011100.1	382781	383301	R	note; Tap-24g11.q1c.C.cand.189 - score = 9.86; uncharacterized protein	complement(join(382781..382917,382991..383047,383079..383301))	Theileria annulata	3865195
TA03250	CDS	TA03250	NC_011100.1	383444	384841	R	note; Tap-24g11.q1c.C.cand.188 - score = 56.06; uncharacterized protein	complement(383444..384841)	Theileria annulata	3865196
TA03255	CDS	TA03255	NC_011100.1	385322	385693	D	note; Tap-24g11.q1c.cand.64 - score = 10.22; uncharacterized protein	385322..385693	Theileria annulata	3865197
TA03260	CDS	TA03260	NC_011100.1	386113	386674	D	note; Tap-24g11.q1c.cand.65 - score = 16.00; uncharacterized protein	join(386113..386176,386308..386339,386399..386452,386493..386532,386598..386674)	Theileria annulata	3865198
TA03275	CDS	TA03275	NC_011100.1	386893	387606	D	note; Tap-24g11.q1c.cand.65 - score = 16.00; plastid 50S ribosomal protein L21 or ribosomal protein L21, putative	386893..387606	Theileria annulata	3865201
TA03280	CDS	TA03280	NC_011100.1	387859	390011	R	note; Tap-24g11.q1c.C.cand.187 - score = 58.95; translation initiation factor, putative	complement(join(387859..388143,388345..388407,388502..388846,388941..390011))	Theileria annulata	3865202
TA03285	CDS	TA03285	NC_011100.1	390074	391072	R	note; Tap-24g11.q1c.C.cand.187 - score = 58.95; uncharacterized protein	complement(390074..391072)	Theileria annulata	3865203
TA03290	CDS	TA03290	NC_011100.1	391205	392170	R	note; Tap-24g11.q1c.C.cand.186 - score = 25.04; uncharacterized protein	complement(391205..392170)	Theileria annulata	3865204
TA03295	CDS	TA03295	NC_011100.1	393129	395768	D	note; Tap-24g11.q1c.cand.66 - score = 53.31; ATP-dependent (RNA) helicase, putative	join(393129..393838,393994..394042,394092..395768)	Theileria annulata	3865205
TA03300	CDS	TA03300	NC_011100.1	395860	397872	R	note; Tap-24g11.q1c.C.cand.185 - score = 42.57; Signal peptide predicted for TA03300 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.552 between residues 19 and 20; uncharacterized protein	complement(395860..397872)	Theileria annulata	3865206
TA03305	CDS	TA03305	NC_011100.1	398143	400326	R	note; Tap-24g11.q1c.C.cand.184 - score = 45.48; Signal peptide predicted for TA03305 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.930 between residues 16 and 17; uncharacterized protein	complement(398143..400326)	Theileria annulata	3865324
TA03310	CDS	TA03310	NC_011100.1	401320	403720	D	note; Tap-24g11.q1c.cand.67 - score = 33.61; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA03310 by TMHMM2.0 at aa 2-21; Signal peptide predicted for TA03310 by SignalP 2.0 HMM (Signal peptide probability 0.821, signal anchor probability 0.038) with cleavage site probability 0.499 between residues 22 and 23; DNA-directed RNA polymerase D subunit, putative	join(401320..401596,401769..401866,401925..401972,402179..402548,402648..403212,403315..403720)	Theileria annulata	3865325
TA03315	CDS	TA03315	NC_011100.1	404037	406541	R	note; Tap-24g11.q1c.C.cand.183 - score = 50.58; phospholipase, putative	complement(join(404037..404204,404331..406541))	Theileria annulata	3865326
TA03320	CDS	TA03320	NC_011100.1	406839	408453	R	note; Tap-24g11.q1c.C.cand.182 - score = 36.33; snrnp splicing factor (U2AF), putative	complement(join(406839..407482,407553..408089,408174..408453))	Theileria annulata	3865327
TA03325	CDS	TA03325	NC_011100.1	408615	409052	R	note; Tap-24g11.q1c.C.cand.181 - score = 9.76; uncharacterized protein	complement(408615..409052)	Theileria annulata	3865328
TA03330	CDS	TA03330	NC_011100.1	409796	414458	R	note; Tap-24g11.q1c.C.cand.180 - score = 85.28; DNA polymerase alpha, catalytic subunit, putative	complement(join(409796..410300,410407..410528,410561..410644,410766..411025,411168..411560,411700..411805,412044..412250,412337..412540,412686..412886,413021..413236,413380..413873,413917..414073,414183..414458))	Theileria annulata	3865329
TA03335	CDS	TA03335	NC_011100.1	414638	418062	R	note; 1 probable transmembrane helix predicted for TA03335 by TMHMM2.0 at aa 865-887; uncharacterized protein	complement(join(414638..414874,415026..415123,415306..416629,416728..416815,416915..417160,417211..417313,417462..418062))	Theileria annulata	3865330
TA03340	CDS	TA03340	NC_011100.1	418247	419917	D	note; Tap-24g11.q1c.cand.68 - score = 29.50; 1 probable transmembrane helix predicted for TA03340 by TMHMM2.0 at aa 44-66; thioredoxin-like protein, putative	join(418247..418471,418556..418692,418725..418926,419047..419328,419462..419632,419662..419715,419777..419917)	Theileria annulata	3865331
TA03345	CDS	TA03345	NC_011100.1	419991	421939	R	note; Tap-24g11.q1c.C.cand.178 - score = 21.45; uncharacterized protein	complement(join(419991..420372,420459..420509,420587..420840,420913..421102,421192..421365,421485..421939))	Theileria annulata	3865332
TA03350	CDS	TA03350	NC_011100.1	422406	424973	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA03350 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA03350 by SignalP 2.0 HMM (Signal peptide probability 0.830, signal anchor probability 0.121) with cleavage site probability 0.613 between residues 19 and 20; chaperonin CPN60, putative	join(422406..423306,423441..423640,423739..423953,424050..424402,424723..424973)	Theileria annulata	3865333
TA03355	CDS	TA03355	NC_011100.1	425106	426539	R	note; Tap-24g11.q1c.C.cand.177 - score = 21.14; uncharacterized protein	complement(425106..426539)	Theileria annulata	3865334
TA03360	CDS	TA03360	NC_011100.1	426764	427730	R	note; Tap-24g11.q1c.C.cand.176 - score = 21.60; uncharacterized protein	complement(join(426764..427197,427262..427730))	Theileria annulata	3865335
TA03365	CDS	TA03365	NC_011100.1	427864	429092	D	note; Tap-24g11.q1c.cand.70 - score = 19.59; 1 probable transmembrane helix predicted for TA03365 by TMHMM2.0 at aa 264-286; uncharacterized protein	join(427864..428279,428313..428766,428820..429092)	Theileria annulata	3865336
TA03370	CDS	TA03370	NC_011100.1	429210	431832	R	note; Tap-24g11.q1c.C.cand.175 - score = 33.94; T-complex protein 1 subunit, putative	complement(join(429210..429427,429624..430103,430241..430354,430453..430582,430704..431040,431170..431311,431400..431579,431703..431832))	Theileria annulata	3865337
TA03380	CDS	TA03380	NC_011100.1	432976	437005	D	note; Tap-24g11.q1c.cand.71 - score = 294.95; splicing factor subunit, putative	join(432976..433312,433422..434450,434552..434812,434908..435639,435808..436335,436450..436754,436871..437005)	Theileria annulata	3865339
TA03385	CDS	TA03385	NC_011100.1	437496	446786	D	Tap-24g11.q1c.cand.71 - score = 294.95; SfiI-subtelomeric fragment related protein family member, putative	437496..446786	Theileria annulata	3865340
TA03390	CDS	TA03390	NC_011100.1	447466	448564	R	note; Tap-24g11.q1c.C.cand.173 - score = 19.66; uncharacterized protein	complement(join(447466..447651,447698..447909,448135..448564))	Theileria annulata	3865341
TA03395	CDS	TA03395	NC_011100.1	449307	451243	D	note; Tap-24g11.q1c.cand.72 - score = 22.13; uncharacterized protein	join(449307..449472,449581..449868,449955..450360,450406..450947,451062..451243)	Theileria annulata	3865342
TA03400	CDS	TA03400	NC_011100.1	451362	453285	D	note; Tap-24g11.q1c.cand.74 - score = 18.41; DEAD-box (RNA) helicase, putative	join(451362..451658,451797..451848,451922..451996,452042..452157,452231..452432,452538..452600,452646..452842,452983..453285)	Theileria annulata	3864614
TA03405	CDS	TA03405	NC_011100.1	453489	455583	R	note; Tap-24g11.q1c.C.cand.172 - score = 33.36; inosine-5'-monophosphate dehydrogenase, putative	complement(join(453489..453917,453989..454117,454171..454278,454403..454562,454618..454944,455038..455199,455284..455422,455502..455583))	Theileria annulata	3864615
TA03410	CDS	TA03410	NC_011100.1	455836	457587	R	note; Tap-24g11.q1c.C.cand.171 - score = 36.95; peptidylprolyl isomerase (cyclophilin), putative	complement(join(455836..456145,456206..456321,456352..457587))	Theileria annulata	3864616
TA03415	CDS	TA03415	NC_011100.1	457827	458698	D	note; Tap-24g11.q1c.cand.75 - score = 14.33; 60S ribosomal protein L24/L30, putative	join(457827..457872,457960..458091,458179..458459,458594..458698)	Theileria annulata	3864617
TA03420	CDS	TA03420	NC_011100.1	458892	460296	D	note; uncharacterized protein	join(458892..458924,459008..459133,459331..459443,459575..460182,460232..460296)	Theileria annulata	3864618
TA03425	CDS	TA03425	NC_011100.1	460654	461346	D	note; sulfur metabolism negative regulator, putative	join(460654..460762,460843..460985,461026..461091,461146..461346)	Theileria annulata	3864619
TA03440	CDS	TA03440	NC_011100.1	461354	462225	R	note; Tap-24g11.q1c.C.cand.170 - score = 8.24; RNA-binding protein, putative	complement(join(461354..461505,461767..462009,462180..462225))	Theileria annulata	3864622
TA03445	CDS	TA03445	NC_011100.1	462589	464277	R	note; Tap-24g11.q1c.C.cand.169 - score = 31.20; (dihydrolipoamide) dehydrogenase precursor, putative	complement(join(462589..463253,463370..463487,463601..464041,464146..464277))	Theileria annulata	3864623
TA03450	CDS	TA03450	NC_011100.1	464880	465334	D	note; Tap-24g11.q1c.cand.78 - score = 7.76; 50S ribosomal protein L27, putative	join(464880..465054,465150..465334)	Theileria annulata	3864624
TA03455	CDS	TA03455	NC_011100.1	465503	467346	R	note; Tap-24g11.q1c.C.cand.168 - score = 37.00; succinate dehydrogenase (flavoprotein) subunit, putative	complement(join(465503..466926,466992..467346))	Theileria annulata	3864625
TA03460	CDS	TA03460	NC_011100.1	468037	469585	D	note; Tap-24g11.q1c.cand.79 - score = 29.97; RNA 3'-terminal phosphate cyclase like-protein, putative	join(468037..468186,468239..469585)	Theileria annulata	3864626
TA03465	CDS	TA03465	NC_011100.1	469656	471254	R	note; Tap-24g11.q1c.C.cand.167 - score = 40.31; seryl-tRNA synthetase, putative	complement(469656..471254)	Theileria annulata	3864627
TA03470	CDS	TA03470	NC_011100.1	471432	473386	R	note; Tap-24g11.q1c.C.cand.166 - score = 28.81; tubulin gamma-chain (gamma-tubulin), putative	complement(join(471432..471570,471603..471670,471724..471879,471961..472038,472108..472719,472781..472908,472974..473034,473066..473197,473288..473386))	Theileria annulata	3864628
TA03475	CDS	TA03475	NC_011100.1	473716	474459	R	note; Tap-24g11.q1c.C.cand.165 - score = 29.48; Signal peptide predicted for TA03475 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.976 between residues 19 and 20; uncharacterized protein	complement(473716..474459)	Theileria annulata	3864629
TA03480	CDS	TA03480	NC_011100.1	474688	478163	R	note; Tap-24g11.q1c.C.cand.164 - score = 40.32; 5 probable transmembrane helices predicted for TA03480 by TMHMM2.0 at aa 115-137, 167-189, 196-218, 233-250 and 255-277; uncharacterized protein	complement(join(474688..474814,474881..475197,475266..476746,476851..477807,477953..478163))	Theileria annulata	3864630
TA03485	CDS	TA03485	NC_011100.1	479138	482351	D	note; DNA replication licensing factor (MCM7 homolog), putative	join(479138..479299,479337..479396,479483..479614,479684..479772,479852..480032,480082..480170,480201..480301,480368..480576,480586..480604,480625..480770,480869..481070,481114..481700,481746..481892,481933..482093,482153..482351)	Theileria annulata	3864631
TA03490	CDS	TA03490	NC_011100.1	482399	482827	R	note; Tap-24g11.q1c.C.cand.163 - score = 9.48; uncharacterized protein	complement(482399..482827)	Theileria annulata	3864632
TA03495	CDS	TA03495	NC_011100.1	482959	488148	R	note; Tap-24g11.q1c.C.cand.162 - score = 133.02; 2 probable transmembrane helices predicted for TA03495 by TMHMM2.0 at aa 309-328 and 335-357; uncharacterized protein	complement(482959..488148)	Theileria annulata	3864633
TA03500	CDS	TA03500	NC_011100.1	488388	489317	R	note; Tap-24g11.q1c.C.cand.162 - score = 133.02; uncharacterized protein	complement(join(488388..488506,488552..489317))	Theileria annulata	3865001
TA03505	CDS	TA03505	NC_011100.1	489417	491059	D	note; Tap-24g11.q1c.cand.83 - score = 30.43; prenyl transferase, putative	join(489417..489493,489552..489973,490005..490201,490285..490477,490513..490634,490664..491059)	Theileria annulata	3865002
TA03510	CDS	TA03510	NC_011100.1	491891	493273	D	note; Tap-24g11.q1c.cand.84 - score = 35.41; uncharacterized protein	join(491891..491992,492022..492089,492162..492318,492350..493273)	Theileria annulata	3865003
TA03515	CDS	TA03515	NC_011100.1	493342	495902	R	note; Tap-24g11.q1c.C.cand.161 - score = 35.44; uncharacterized protein	complement(join(493342..493421,493475..494582,494817..494927,495052..495289,495383..495550,495607..495902))	Theileria annulata	3865004
TA03520	CDS	TA03520	NC_011100.1	496040	499969	R	note; Tap-24g11.q1c.C.cand.160 - score = 75.59; uncharacterized protein	complement(496040..499969)	Theileria annulata	3865005
TA03521	CDS	TA03521	NC_011100.1	500770	513651	R	Theileria-specific hypothetical telomeric sfii fragment-related protein, putative	complement(500770..513651)	Theileria annulata	3865006
TA03525	CDS	TA03525	NC_011100.1	514691	518132	R	note; Tap-24g11.q1c.C.cand.158 - score = 76.85; uncharacterized protein	complement(join(514691..517385,517420..517535,517567..517637,517679..518132))	Theileria annulata	3865007
TA03530	CDS	TA03530	NC_011100.1	518224	520128	D	note; Tap-24g11.q1c.cand.85 - score = 16.47; Apicoplast targetting peptide predicted by the PlasmoAP tool; 10 probable transmembrane helices predicted for TA03530 by TMHMM2.0 at aa 4-26, 146-163, 178-200, 306-325, 329-351, 385-407, 510-529, 549-571, 576-598 and 611-633; Signal peptide predicted for TA03530 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.792 between residues 23 and 24; uncharacterized protein	518224..520128	Theileria annulata	3865008
TA03535	CDS	TA03535	NC_011100.1	520238	521083	R	note; Tap-24g11.q1c.C.cand.157 - score = 16.81; uncharacterized protein	complement(520238..521083)	Theileria annulata	3865009
TA03545	CDS	TA03545	NC_011100.1	521248	523368	R	note; Tap-24g11.q1c.C.cand.156 - score = 68.47; Signal peptide predicted for TA03545 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.000) with cleavage site probability 0.665 between residues 16 and 17; uncharacterized protein	complement(521248..523368)	Theileria annulata	3865011
TA03550	CDS	TA03550	NC_011100.1	523728	525256	R	note; Tap-24g11.q1c.C.cand.155 - score = 42.13; uncharacterized protein	complement(join(523728..525073,525142..525256))	Theileria annulata	3865012
TA03555	CDS	TA03555	NC_011100.1	525552	526841	D	note; Tap-24g11.q1c.cand.86 - score = 30.40; uncharacterized protein	join(525552..525588,525667..525705,525862..526841)	Theileria annulata	3865013
TA03560	CDS	TA03560	NC_011100.1	526927	528749	R	note; Tap-24g11.q1c.C.cand.154 - score = 40.86; uncharacterized protein	complement(join(526927..527274,527305..527589,527618..527742,527779..527832,527873..527950,528010..528356,528421..528554,528585..528749))	Theileria annulata	3865014
TA03565	CDS	TA03565	NC_011100.1	529085	531268	D	note; Tap-24g11.q1c.cand.87 - score = 32.00; uncharacterized protein	529085..531268	Theileria annulata	3865015
TA03570	CDS	TA03570	NC_011100.1	531443	533974	R	note; Tap-24g11.q1c.C.cand.153 - score = 49.45; uncharacterized protein	complement(join(531443..532389,532463..532538,532784..533974))	Theileria annulata	3865016
TA03575	CDS	TA03575	NC_011100.1	534913	535985	D	note; Tap-24g11.q1c.cand.88 - score = 27.83; ATP-binding protein, putative	join(534913..535111,535165..535985)	Theileria annulata	3865017
TA03580	CDS	TA03580	NC_011100.1	536166	537485	R	note; Tap-24g11.q1c.C.cand.152 - score = 32.00; uncharacterized protein	complement(join(536166..536192,536223..536312,536345..536390,536421..536508,536565..536715,536782..537003,537059..537150,537215..537485))	Theileria annulata	3865018
TA03585	CDS	TA03585	NC_011100.1	537693	539198	R	note; Tap-24g11.q1c.C.cand.151 - score = 31.26; uncharacterized protein	complement(join(537693..538031,538176..539198))	Theileria annulata	3865019
TA03590	CDS	TA03590	NC_011100.1	539411	541451	R	note; Tap-24g11.q1c.C.cand.150 - score = 26.94; 12 probable transmembrane helices predicted for TA03590 by TMHMM2.0 at aa 29-51, 64-86, 96-113, 155-177, 192-214, 249-271, 365-384, 410-432, 452-474, 487-506, 526-548 and 569-591; Signal anchor predicted for TA03590 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.659) with cleavage site probability 0.004 between residues 40 and 41; uncharacterized protein	complement(join(539411..539553,539636..539929,540021..540162,540189..541451))	Theileria annulata	3864850
TA03600	CDS	TA03600	NC_011100.1	542043	544581	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03600 by SignalP 2.0 HMM (Signal peptide probability 0.699, signal anchor probability 0.000) with cleavage site probability 0.599 between residues 18 and 19; uncharacterized protein	join(542043..543103,543318..544581)	Theileria annulata	3864852
TA03605	CDS	TA03605	NC_011100.1	545499	546331	R	note; Tap-24g11.q1c.C.cand.149 - score = 13.66; uncharacterized protein	complement(join(545499..545687,545775..545882,545913..545981,546011..546107,546183..546331))	Theileria annulata	3864853
TA03610	CDS	TA03610	NC_011100.1	546799	548198	D	note; Tap-24g11.q1c.cand.90 - score = 32.68; 2 probable transmembrane helices predicted for TA03610 by TMHMM2.0 at aa 228-250 and 255-277; uncharacterized protein	join(546799..546870,546904..547019,547064..547298,547327..547387,547537..547665,547742..547832,547862..548198)	Theileria annulata	3864854
TA03615	CDS	TA03615	NC_011100.1	548618	550957	D	note; Tap-24g11.q1c.cand.91 - score = 41.88; Signal peptide predicted for TA03615 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.906 between residues 18 and 19; uncharacterized protein	548618..550957	Theileria annulata	3864855
TA03620	CDS	TA03620	NC_011100.1	551151	552618	R	note; Tap-24g11.q1c.C.cand.148 - score = 21.07; 2 probable transmembrane helices predicted for TA03620 by TMHMM2.0 at aa 287-309 and 339-361; Signal peptide predicted for TA03620 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.001) with cleavage site probability 0.580 between residues 21 and 22; bifunctional nuclease, putative	complement(join(551151..551276,551342..551877,551959..552381,552528..552618))	Theileria annulata	3864856
TA03625	CDS	TA03625	NC_011100.1	552789	553953	R	note; Tap-24g11.q1c.C.cand.147 - score = 22.12; uncharacterized protein	complement(join(552789..553019,553058..553234,553328..553423,553543..553646,553714..553819,553891..553953))	Theileria annulata	3864857
TA03630	CDS	TA03630	NC_011100.1	554842	556521	D	note; Tap-24g11.q1c.cand.92 - score = 36.22; uncharacterized protein	554842..556521	Theileria annulata	3864858
TA03635	CDS	TA03635	NC_011100.1	556606	557303	R	note; Tap-24g11.q1c.C.cand.146 - score = 16.35; uncharacterized protein	complement(join(556606..556775,556814..556905,556984..557303))	Theileria annulata	3864859
TA03640	CDS	TA03640	NC_011100.1	557464	560904	R	note; Tap-24g11.q1c.C.cand.145 - score = 72.33; Signal peptide predicted for TA03640 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.649 between residues 19 and 20; GPI-Anchor Signal predicted for TA03640 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(557464..560904)	Theileria annulata	3864860
TA03645	CDS	TA03645	NC_011100.1	561062	562452	R	note; Tap-24g11.q1c.C.cand.144 - score = 20.44; 50S ribosomal protein L2, putative	complement(join(561062..561225,561254..561318,561440..561577,561609..561697,561765..562148,562193..562323,562419..562452))	Theileria annulata	3864861
TA03655	CDS	TA03655	NC_011100.1	562575	564349	D	note; Tap-24g11.q1c.cand.93 - score = 47.65; uncharacterized protein	join(562575..562661,562702..563066,563100..564027,564059..564349)	Theileria annulata	3864863
TA03660	CDS	TA03660	NC_011100.1	564419	564794	D	note; Tap-24g11.q1c.cand.94 - score = 7.10; uncharacterized protein	join(564419..564493,564534..564794)	Theileria annulata	3864864
TA03665	CDS	TA03665	NC_011100.1	565013	565840	R	note; uncharacterized protein	complement(565013..565840)	Theileria annulata	3864865
TA03670	CDS	TA03670	NC_011100.1	565929	566519	D	note; Tap-24g11.q1c.cand.95 - score = 11.38; Signal peptide predicted for TA03670 by SignalP 2.0 HMM (Signal peptide probability 0.613, signal anchor probability 0.000) with cleavage site probability 0.273 between residues 20 and 21; uncharacterized protein	565929..566519	Theileria annulata	3864866
TA03675	CDS	TA03675	NC_011100.1	566721	567748	R	note; Tap-24g11.q1c.C.cand.142 - score = 25.82; uncharacterized protein	complement(join(566721..566999,567032..567061,567097..567270,567303..567398,567455..567556,567587..567748))	Theileria annulata	3864867
TA03680	CDS	TA03680	NC_011100.1	567794	568436	R	note; Tap-24g11.q1c.C.cand.141 - score = 13.71; Signal peptide predicted for TA03680 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.005) with cleavage site probability 0.453 between residues 22 and 23; uncharacterized protein	complement(join(567794..567954,567989..568436))	Theileria annulata	3864868
TA03685	CDS	TA03685	NC_011100.1	568725	569809	D	note; Tap-24g11.q1c.cand.96 - score = 18.70; uncharacterized protein	join(568725..568896,568932..569101,569134..569313,569385..569588,569636..569809)	Theileria annulata	3864869
TA03690	CDS	TA03690	NC_011100.1	570237	571521	R	note; Tap-24g11.q1c.C.cand.140 - score = 37.15; eukaryotic initiation factor, putative	complement(join(570237..570592,570653..570971,571022..571260,571296..571348,571421..571521))	Theileria annulata	3864595
TA03695	CDS	TA03695	NC_011100.1	571877	572832	R	note; Tap-24g11.q1c.C.cand.139 - score = 22.80; 1 probable transmembrane helix predicted for TA03695 by TMHMM2.0 at aa 13-32; uncharacterized protein	complement(join(571877..572038,572068..572224,572254..572335,572392..572560,572590..572832))	Theileria annulata	3864596
TA03700	CDS	TA03700	NC_011100.1	573070	573694	R	note; Tap-24g11.q1c.C.cand.138 - score = 14.42; uncharacterized protein	complement(join(573070..573353,573389..573469,573508..573694))	Theileria annulata	3864597
TA03715	CDS	TA03715	NC_011100.1	574323	576295	D	note; Tap-24g11.q1c.cand.97 - score = 43.71; GTP-binding protein, putative	join(574323..574739,574771..575289,575321..575762,575793..576295)	Theileria annulata	3864600
TA03720	CDS	TA03720	NC_011100.1	576922	578324	D	note; Tap-24g11.q1c.cand.98 - score = 35.21; 1 probable transmembrane helix predicted for TA03720 by TMHMM2.0 at aa 47-69; Signal anchor predicted for TA03720 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.999) with cleavage site probability 0.000 between residues -1 and 0; cysteine proteinase precursor, tacP, putative	join(576922..577411,577474..578324)	Theileria annulata	3864601
TA03725	CDS	TA03725	NC_011100.1	578681	580086	D	note; Tap-24g11.q1c.cand.99 - score = 34.22; 1 probable transmembrane helix predicted for TA03725 by TMHMM2.0 at aa 47-69; Signal anchor predicted for TA03725 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.999) with cleavage site probability 0.000 between residues -1 and 0; cysteine proteinase precursor, tacP, putative	join(578681..579170,579233..580086)	Theileria annulata	3864602
TA03730	CDS	TA03730	NC_011100.1	581004	582500	D	note; Tap-24g11.q1c.cand.100 - score = 76.91; 1 probable transmembrane helix predicted for TA03730 by TMHMM2.0 at aa 46-68; Signal anchor predicted for TA03730 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.925) with cleavage site probability 0.000 between residues -1 and 0; cysteine proteinase precursor, tacP, putative	581004..582500	Theileria annulata	3864603
TA03735	CDS	TA03735	NC_011100.1	582685	584111	D	note; Tap-24g11.q1c.cand.100 - score = 76.91; 1 probable transmembrane helix predicted for TA03735 by TMHMM2.0 at aa 45-67; Signal anchor predicted for TA03735 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.978) with cleavage site probability 0.000 between residues 59 and 60; cysteine protease precursor, tacP, putative	join(582685..583165,583207..584111)	Theileria annulata	3864604
TA03740	CDS	TA03740	NC_011100.1	584825	586150	D	note; Tap-24g11.q1c.cand.101 - score = 24.10; 1 probable transmembrane helix predicted for TA03740 by TMHMM2.0 at aa 38-60; Signal anchor predicted for TA03740 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.840) with cleavage site probability 0.005 between residues 54 and 55; cysteine proteinase precursor, tacP, putative	584825..586150	Theileria annulata	3864605
TA03745	CDS	TA03745	NC_011100.1	586517	587877	D	note; Tap-24g11.q1c.cand.102 - score = 35.38; 1 probable transmembrane helix predicted for TA03745 by TMHMM2.0 at aa 43-65; Signal anchor predicted for TA03745 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.972) with cleavage site probability 0.000 between residues 58 and 59; cysteine proteinase precursor, tacP, putative	join(586517..586991,587024..587877)	Theileria annulata	3864606
TA03750	CDS	TA03750	NC_011100.1	588241	589589	D	note; Tap-24g11.q1c.cand.103 - score = 35.76; 1 probable transmembrane helix predicted for TA03750 by TMHMM2.0 at aa 43-65; Signal anchor predicted for TA03750 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.972) with cleavage site probability 0.000 between residues 58 and 59; cysteine proteinase precursor, tacP, putative	join(588241..588715,588748..589589)	Theileria annulata	3864607
TA03755	CDS	TA03755	NC_011100.1	591333	594086	D	note; 1 probable transmembrane helix predicted for TA03755 by TMHMM2.0 at aa 894-916; Signal peptide predicted for TA03755 by SignalP 2.0 HMM (Signal peptide probability 0.910, signal anchor probability 0.002) with cleavage site probability 0.441 between residues 18 and 19; GPI-Anchor Signal predicted for TA03755 by DGPI v2.04 with cleavage site probability 0.59159994 near 896; sporozoite surface antigen, putative	591333..594086	Theileria annulata	3864608
TA03760	CDS	TA03760	NC_011100.1	594181	596136	D	ORF1-related protein, putative	594181..596136	Theileria annulata	3864609
TA03770	CDS	TA03770	NC_011100.1	596200	597142	R	note; Tap-24g11.q1c.C.cand.135 - score = 23.35; Signal peptide predicted for TA03770 by SignalP 2.0 HMM (Signal peptide probability 0.777, signal anchor probability 0.000) with cleavage site probability 0.761 between residues 18 and 19; uncharacterized protein	complement(join(596200..596855,596887..597142))	Theileria annulata	3864611
TA03775	CDS	TA03775	NC_011100.1	597289	599202	R	note; Tap-24g11.q1c.C.cand.134 - score = 43.67; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA03775 by TMHMM2.0 at aa 2-20; Signal peptide predicted for TA03775 by SignalP 2.0 HMM (Signal peptide probability 0.933, signal anchor probability 0.011) with cleavage site probability 0.655 between residues 17 and 18; uncharacterized protein	complement(join(597289..597582,597613..598017,598070..598461,598491..598776,598807..599202))	Theileria annulata	3864612
TA03780	CDS	TA03780	NC_011100.1	600878	610300	R	note; Tap-24g11.q1c.C.cand.133 - score = 125.35; splicing factor (PRP8 homologue), putative	complement(join(600878..601413,601623..603053,603444..604294,604571..607892,607972..609972,610081..610300))	Theileria annulata	3864613
TA03785	CDS	TA03785	NC_011100.1	610615	611525	R	note; Tap-24g11.q1c.C.cand.132 - score = 10.72; proteasome subunit, putative	complement(join(610615..610925,611066..611525))	Theileria annulata	3864830
TA03790	CDS	TA03790	NC_011100.1	611679	612876	R	note; Tap-24g11.q1c.C.cand.131 - score = 8.64; U2 snRNP auxiliary factor, putative	complement(join(611679..611778,611861..612062,612354..612563,612678..612876))	Theileria annulata	3864831
TA03795	CDS	TA03795	NC_011100.1	613053	614940	D	note; Tap-24g11.q1c.cand.106 - score = 24.38; uncharacterized protein	join(613053..613187,613351..614940)	Theileria annulata	3864832
TA03800	CDS	TA03800	NC_011100.1	615343	618012	D	note; Tap-24g11.q1c.cand.107 - score = 28.87; uncharacterized protein	615343..618012	Theileria annulata	3864833
TA03805	CDS	TA03805	NC_011100.1	618449	622031	R	note; Tap-24g11.q1c.C.cand.130 - score = 72.39; uncharacterized protein	complement(join(618449..620226,620276..620335,620648..620770,620806..621525,621564..621602,621959..622031))	Theileria annulata	3864834
TA03810	CDS	TA03810	NC_011100.1	623704	624339	R	note; Tap-24g11.q1c.C.cand.129 - score = 9.36; uncharacterized protein	complement(623704..624339)	Theileria annulata	3864835
TA03815	CDS	TA03815	NC_011100.1	626505	627242	D	note; Tap-24g11.q1c.cand.108 - score = 8.80; uncharacterized protein	626505..627242	Theileria annulata	3864836
TA03825	CDS	TA03825	NC_011100.1	627893	628840	D	note; Tap-24g11.q1c.cand.109 - score = 14.97; 3 probable transmembrane helices predicted for TA03825 by TMHMM2.0 at aa 219-238, 242-264 and 277-299; uncharacterized protein	627893..628840	Theileria annulata	3864838
TA03830	CDS	TA03830	NC_011100.1	628962	629786	D	note; Tap-24g11.q1c.cand.110 - score = 12.98; uncharacterized protein	join(628962..629059,629093..629183,629261..629334,629480..629786)	Theileria annulata	3864839
TA03835	CDS	TA03835	NC_011100.1	630121	631713	D	note; Tap-24g11.q1c.cand.111 - score = 67.43; 1 probable transmembrane helix predicted for TA03835 by TMHMM2.0 at aa 13-35; uncharacterized protein	630121..631713	Theileria annulata	3864840
TA03840	CDS	TA03840	NC_011100.1	631827	634205	D	note; Tap-24g11.q1c.cand.111 - score = 67.43; uncharacterized protein	631827..634205	Theileria annulata	3864841
TA03845	CDS	TA03845	NC_011100.1	634649	636694	R	note; Tap-24g11.q1c.C.cand.127 - score = 82.68; 2 probable transmembrane helices predicted for TA03845 by TMHMM2.0 at aa 36-58 and 203-225; uncharacterized protein	complement(join(634649..634993,635083..635904,635943..636272,636326..636694))	Theileria annulata	3864842
TA03850	CDS	TA03850	NC_011100.1	636952	639802	R	Tap-24g11.q1c.C.cand.127 - score = 82.68; Signal peptide predicted for TA03850 by SignalP 2.0 HMM (Signal peptide probability 0.836, signal anchor probability 0.002) with cleavage site probability 0.318 between residues 33 and 34; Tpr-related protein family member, putative	complement(join(636952..639330,639662..639802))	Theileria annulata	3864843
TA03855	CDS	TA03855	NC_011100.1	639900	640940	R	note; Tap-24g11.q1c.C.cand.126 - score = 17.57; 6 probable transmembrane helices predicted for TA03855 by TMHMM2.0 at aa 17-36, 40-62, 69-91, 101-123, 135-157 and 196-218; Signal peptide predicted for TA03855 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.433 between residues 38 and 39; Tpr-related protein family member, putative	complement(639900..640940)	Theileria annulata	3864844
TA03860	CDS	TA03860	NC_011100.1	641297	642974	R	note; Tap-24g11.q1c.C.cand.125 - score = 16.14; pepsinogen, putative	complement(join(641297..641530,641562..641603,641943..642344,642701..642817,642885..642974))	Theileria annulata	3864845
TA03865	CDS	TA03865	NC_011100.1	645102	646576	D	note; Tap-24g11.q1c.cand.113 - score = 28.01; 1 probable transmembrane helix predicted for TA03865 by TMHMM2.0 at aa 7-29; uncharacterized protein	join(645102..645162,645243..646576)	Theileria annulata	3864846
TA03870	CDS	TA03870	NC_011100.1	647147	647746	R	note; Tap-24g11.q1c.C.cand.124 - score = 14.22; Signal peptide predicted for TA03870 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.982 between residues 17 and 18; uncharacterized protein	complement(647147..647746)	Theileria annulata	3864847
TA03880	CDS	TA03880	NC_011100.1	649351	649797	R	note; Tap-24g11.q1c.C.cand.123 - score = 14.70; uncharacterized protein	complement(join(649351..649450,649481..649575,649606..649797))	Theileria annulata	3864849
TA03885	CDS	TA03885	NC_011100.1	649917	651084	R	note; Tap-24g11.q1c.C.cand.122 - score = 10.62; uncharacterized protein	complement(join(649917..650580,650843..651084))	Theileria annulata	3864772
TA03890	CDS	TA03890	NC_011100.1	652254	663629	D	chromosome segregation (SMC) protein, putative	join(652254..654546,655580..656265,656495..656565,656983..657064,657097..657200,657744..657815,658159..658363,658395..658505,658873..658988,659309..659453,659833..659893,659937..660010,660277..660370,660951..661034,661201..661372,661885..661990,662204..662363,662450..662574,662652..663629)	Theileria annulata	3864773
TA03895	CDS	TA03895	NC_011100.1	664899	665912	D	note; Tap-24g11.q1c.cand.121 - score = 9.09; casein kinase, putative	664899..665912	Theileria annulata	3864774
TA03900	CDS	TA03900	NC_011100.1	666726	668248	R	note; Tap-24g11.q1c.C.cand.121 - score = 31.87; RNA-binding protein, putative; SfiI-subtelomeric fragment related protein family member, putative	complement(join(666726..667042,667426..668102,668136..668248))	Theileria annulata	3864775
TA03905	CDS	TA03905	NC_011100.1	668494	669090	R	note; Tap-24g11.q1c.C.cand.121 - score = 31.87; uncharacterized protein	complement(668494..669090)	Theileria annulata	3864776
TA03910	CDS	TA03910	NC_011100.1	671140	677563	D	note; Tap-24g11.q1c.cand.122 - score = 18.02; Signal peptide predicted for TA03910 by SignalP 2.0 HMM (Signal peptide probability 0.726, signal anchor probability 0.000) with cleavage site probability 0.649 between residues 15 and 16; uncharacterized protein	join(671140..671842,671956..672107,672365..672500,672602..672668,673089..673606,674012..674114,674387..674400,674488..674575,674716..674821,675294..675699,676192..676334,676367..676443,677206..677248,677330..677563)	Theileria annulata	3864777
TA03915	CDS	TA03915	NC_011100.1	677717	678040	R	note; Tap-24g11.q1c.C.cand.120 - score = 8.33; uncharacterized protein	complement(677717..678040)	Theileria annulata	3864778
TA03920	CDS	TA03920	NC_011100.1	678855	679729	R	note; Tap-24g11.q1c.C.cand.119 - score = 15.13; uncharacterized protein	complement(join(678855..678965,678998..679054,679163..679373,679492..679556,679652..679729))	Theileria annulata	3864779
TA03925	CDS	TA03925	NC_011100.1	679788	685881	R	note; Tap-24g11.q1c.C.cand.115 - score = 14.08; uncharacterized protein	complement(join(679788..679982,680089..680227,680789..680952,681075..681174,681414..681496,682459..682672,683122..683236,683277..683398,683961..684452,685074..685565,685598..685881))	Theileria annulata	3864780
TA03935	CDS	TA03935	NC_011100.1	686912	688111	D	note; Tap-24g11.q1c.cand.124 - score = 30.31; uncharacterized protein	join(686912..687047,687154..687230,687262..687342,687564..687655,687747..687805,687836..687918,687950..688111)	Theileria annulata	3864782
TA03940	CDS	TA03940	NC_011100.1	688154	690187	D	1 probable transmembrane helix predicted for TA03940 by TMHMM2.0 at aa 608-630; uncharacterized protein	688154..690187	Theileria annulata	3864783
TA03945	CDS	TA03945	NC_011100.1	692575	694351	D	note; Tap-24g11.q1c.cand.126 - score = 28.71; uncharacterized protein	join(692575..693338,693489..693670,693909..694351)	Theileria annulata	3864784
TA03950	CDS	TA03950	NC_011100.1	694551	695378	D	note; Tap-24g11.q1c.cand.126 - score = 28.71; 1 probable transmembrane helix predicted for TA03950 by TMHMM2.0 at aa 10-32; Signal anchor predicted for TA03950 by SignalP 2.0 HMM (Signal peptide probability 0.125, signal anchor probability 0.762) with cleavage site probability 0.107 between residues 26 and 27; 50S ribosomal protein L12, putative	694551..695378	Theileria annulata	3864785
TA03955	CDS	TA03955	NC_011100.1	695589	696644	D	note; Tap-24g11.q1c.cand.127 - score = 51.59; uncharacterized protein	join(695589..696486,696562..696644)	Theileria annulata	3864786
TA03960	CDS	TA03960	NC_011100.1	697042	698442	D	note; Tap-24g11.q1c.cand.127 - score = 51.59; uncharacterized protein	join(697042..697161,697249..698442)	Theileria annulata	3864787
TA03965	CDS	TA03965	NC_011100.1	698631	699872	D	note; Tap-24g11.q1c.cand.128 - score = 35.76; 4 probable transmembrane helices predicted for TA03965 by TMHMM2.0 at aa 120-142, 193-215, 284-306 and 389-411; uncharacterized protein	698631..699872	Theileria annulata	3864788
TA03970	CDS	TA03970	NC_011100.1	699903	701147	D	note; Tap-24g11.q1c.cand.128 - score = 35.76; 7 probable transmembrane helices predicted for TA03970 by TMHMM2.0 at aa 66-88, 103-125, 145-164, 193-215, 277-299, 314-336 and 343-365; uncharacterized protein	699903..701147	Theileria annulata	3864789
TA03975	CDS	TA03975	NC_011100.1	701255	702076	R	note; Tap-24g11.q1c.C.cand.114 - score = 22.48; uncharacterized protein	complement(join(701255..701514,701542..702076))	Theileria annulata	3864790
TA03980	CDS	TA03980	NC_011100.1	702093	702751	R	note; Tap-24g11.q1c.C.cand.113 - score = 17.50; ubiquitin-conjugating enzyme E2, putative	complement(join(702093..702358,702390..702479,702511..702646,702737..702751))	Theileria annulata	3865207
TA03990	CDS	TA03990	NC_011100.1	702850	703372	D	note; Tap-24g11.q1c.cand.129 - score = 16.46; uncharacterized protein	join(702850..703073,703102..703372)	Theileria annulata	3865209
TA03995	CDS	TA03995	NC_011100.1	703611	707347	R	note; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03995 by SignalP 2.0 HMM (Signal peptide probability 0.931, signal anchor probability 0.019) with cleavage site probability 0.729 between residues 22 and 23; uncharacterized protein	complement(join(703611..704162,704201..704248,704280..704336,704372..707347))	Theileria annulata	3865210
TA04000	CDS	TA04000	NC_011100.1	708380	710239	D	note; Tap-24g11.q1c.cand.130 - score = 17.59; 12 probable transmembrane helices predicted for TA04000 by TMHMM2.0 at aa 47-69, 84-106, 113-132, 136-158, 170-189, 199-221, 411-433, 448-470, 483-505, 510-532, 545-567 and 577-599; integral membrane protein family I, putative	708380..710239	Theileria annulata	3865211
TA04005	CDS	TA04005	NC_011100.1	710627	712303	D	note; Tap-24g11.q1c.cand.131 - score = 14.05; 12 probable transmembrane helices predicted for TA04005 by TMHMM2.0 at aa 48-70, 85-107, 114-133, 137-159, 172-194, 204-223, 355-377, 392-414, 427-449, 454-476, 489-511 and 521-543; integral membrane protein family I, putative	710627..712303	Theileria annulata	3865212
TA04010	CDS	TA04010	NC_011100.1	712718	714412	D	note; Tap-24g11.q1c.cand.132 - score = 13.66; 12 probable transmembrane helices predicted for TA04010 by TMHMM2.0 at aa 48-70, 83-105, 110-132, 137-159, 174-196, 203-222, 352-374, 387-409, 424-446, 451-473, 488-510 and 517-539; integral membrane protein family I, putative	712718..714412	Theileria annulata	3865213
TA04015	CDS	TA04015	NC_011100.1	714790	716424	D	12 probable transmembrane helices predicted for TA04015 by TMHMM2.0 at aa 30-52, 72-93, 100-119, 123-145, 157-176, 191-210, 339-361, 376-398, 411-433, 438-460, 472-494 and 504-526; integral membrane protein family I, putative	714790..716424	Theileria annulata	3865214
TA04016	CDS	TA04016	NC_011100.1	716781	718415	D	11 probable transmembrane helices predicted for TA04016 by TMHMM2.0 at aa 35-57, 70-92, 97-119, 124-146, 161-183, 339-361, 376-398, 411-433, 438-460, 473-495 and 505-527; integral membrane protein family I, putative	716781..718415	Theileria annulata	3865215
TA04017	CDS	TA04017	NC_011100.1	718772	720427	D	12 probable transmembrane helices predicted for TA04017 by TMHMM2.0 at aa 35-57, 70-92, 97-119, 124-146, 161-183, 190-209, 339-361, 374-396, 411-433, 438-460, 475-497 and 504-526; integral membrane protein family I, putative	718772..720427	Theileria annulata	3865216
TA04018	CDS	TA04018	NC_011100.1	720805	722439	D	12 probable transmembrane helices predicted for TA04018 by TMHMM2.0 at aa 30-52, 72-93, 100-119, 123-145, 157-176, 191-210, 339-361, 376-398, 411-433, 438-460, 472-494 and 504-526; integral membrane protein family I, putative	720805..722439	Theileria annulata	3865217
TA04020	CDS	TA04020	NC_011100.1	722796	723683	D	note; Tap-24g11.q1c.cand.134 - score = 7.00; 5 probable transmembrane helices predicted for TA04020 by TMHMM2.0 at aa 35-57, 72-94, 107-129, 158-180 and 185-207; integral membrane protein family I, putative	join(722796..723163,723359..723683)	Theileria annulata	3865218
TA04025	CDS	TA04025	NC_011100.1	724132	725475	D	note; Tap-24g11.q1c.cand.135 - score = 29.82; uncharacterized protein	724132..725475	Theileria annulata	3865219
TA04030	CDS	TA04030	NC_011100.1	725694	726724	D	note; Tap-24g11.q1c.cand.136 - score = 14.78; 6 probable transmembrane helices predicted for TA04030 by TMHMM2.0 at aa 53-70, 75-97, 110-132, 142-159, 179-201 and 268-290; Signal anchor predicted for TA04030 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.777) with cleavage site probability 0.000 between residues -1 and 0; ER lumen protein retaining receptor 1, putative	join(725694..726082,726153..726441,726473..726724)	Theileria annulata	3865220
TA04035	CDS	TA04035	NC_011100.1	726827	728361	D	note; Tap-24g11.q1c.cand.137 - score = 44.76; 8 probable transmembrane helices predicted for TA04035 by TMHMM2.0 at aa 7-28, 83-104, 132-154, 206-228, 248-270, 306-328, 341-363 and 378-397; uncharacterized protein	join(726827..727204,727235..727297,727329..727706,727737..727817,727847..727888,727918..728109,728140..728361)	Theileria annulata	3865221
TA04040	CDS	TA04040	NC_011100.1	728462	729132	D	note; Tap-24g11.q1c.cand.137 - score = 44.76; uncharacterized protein	join(728462..728517,728549..728664,728735..728823,728854..728974,729004..729054,729086..729132)	Theileria annulata	3865222
TA04045	CDS	TA04045	NC_011100.1	729455	731380	D	note; Tap-24g11.q1c.cand.138 - score = 56.43; glucose-6-phosphate isomerase, putative	join(729455..729590,729622..730103,730142..730244,730274..730365,730421..730782,730813..730900,730932..731163,731193..731380)	Theileria annulata	3865223
TA04050	CDS	TA04050	NC_011100.1	731384	732967	R	note; Tap-24g11.q1c.C.cand.111 - score = 34.67; uncharacterized protein	complement(731384..732967)	Theileria annulata	3865224
TA04055	CDS	TA04055	NC_011100.1	733877	735297	D	note; Tap-24g11.q1c.cand.139 - score = 24.15; 12 probable transmembrane helices predicted for TA04055 by TMHMM2.0 at aa 38-60, 75-94, 107-129, 133-155, 168-185, 195-212, 233-255, 275-297, 304-326, 336-358, 371-393 and 408-427; uncharacterized protein	join(733877..734356,734389..734618,734649..735297)	Theileria annulata	3865225
TA04060	CDS	TA04060	NC_011100.1	735621	737039	D	note; Tap-24g11.q1c.cand.140 - score = 29.57; 12 probable transmembrane helices predicted for TA04060 by TMHMM2.0 at aa 37-59, 74-93, 106-128, 132-154, 167-184, 194-211, 236-258, 273-295, 302-321, 336-358, 370-392 and 407-429; uncharacterized protein	join(735621..736097,736131..736360,736391..737039)	Theileria annulata	3865226
TA04065	CDS	TA04065	NC_011100.1	737770	739003	D	note; Tap-24g11.q1c.cand.141 - score = 33.29; uncharacterized protein	join(737770..737823,737858..738726,738756..738839,738871..739003)	Theileria annulata	3865381
TA04070	CDS	TA04070	NC_011100.1	739193	739831	R	note; Tap-24g11.q1c.C.cand.110 - score = 21.63; cyclophilin, putative	complement(join(739193..739325,739356..739477,739524..739718,739754..739831))	Theileria annulata	3865382
TA04075	CDS	TA04075	NC_011100.1	739965	740406	D	note; Tap-24g11.q1c.cand.142 - score = 16.04; uncharacterized protein	join(739965..740168,740212..740406)	Theileria annulata	3865383
TA04080	CDS	TA04080	NC_011100.1	740422	741884	D	note; Tap-24g11.q1c.cand.143 - score = 37.47; AAA family ATPase, putative	join(740422..740734,740768..740836,740874..740945,740981..741091,741121..741424,741454..741585,741625..741751,741783..741884)	Theileria annulata	3865384
TA04085	CDS	TA04085	NC_011100.1	742014	745361	R	note; Tap-24g11.q1c.C.cand.109 - score = 76.38; uncharacterized protein	complement(742014..745361)	Theileria annulata	3865385
TA04095	CDS	TA04095	NC_011100.1	746827	748603	D	note; Tap-24g11.q1c.cand.144 - score = 21.03; 2 probable transmembrane helices predicted for TA04095 by TMHMM2.0 at aa 362-384 and 396-415; uncharacterized protein	join(746827..747077,747108..747186,747218..747300,747331..747481,747513..747656,747713..747862,747908..748069,748370..748603)	Theileria annulata	3865387
TA04100	CDS	TA04100	NC_011100.1	748630	749010	D	0513. Could not extend upstream; GPI-Anchor Signal predicted for TA04100 by DGPI v2.04 with cleavage site probability 0.1462 near 88; uncharacterized protein	748630..749010	Theileria annulata	3865388
TA04105	CDS	TA04105	NC_011100.1	749151	750915	R	note; Tap-24g11.q1c.C.cand.108 - score = 45.42; Signal peptide predicted for TA04105 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.000) with cleavage site probability 0.822 between residues 20 and 21; cysteine proteinase, putative	complement(join(749151..749347,749376..750281,750312..750416,750481..750630,750660..750781,750812..750915))	Theileria annulata	3865389
TA04110	CDS	TA04110	NC_011100.1	751401	752157	R	note; Tap-24g11.q1c.C.cand.107 - score = 21.38; uncharacterized protein	complement(join(751401..751745,751776..751862,751892..751976,752006..752157))	Theileria annulata	3865390
TA04115	CDS	TA04115	NC_011100.1	752673	753026	R	note; Tap-24g11.q1c.C.cand.106 - score = 16.48; uncharacterized protein	complement(join(752673..752882,752913..753026))	Theileria annulata	3865391
TA04120	CDS	TA04120	NC_011100.1	753339	754499	R	note; Tap-24g11.q1c.C.cand.105 - score = 16.90; 3 probable transmembrane helices predicted for TA04120 by TMHMM2.0 at aa 198-220, 243-265 and 299-321; mitochondrial carrier, putative	complement(join(753339..753490,753537..753638,753677..753928,753959..754499))	Theileria annulata	3865392
TA04125	CDS	TA04125	NC_011100.1	755017	759066	D	note; Tap-24g11.q1c.cand.145 - score = 83.69; uncharacterized protein	755017..759066	Theileria annulata	3865393
TA04130	CDS	TA04130	NC_011100.1	759209	760338	R	note; Tap-24g11.q1c.C.cand.104 - score = 19.02; uncharacterized protein	complement(join(759209..759816,759851..760113,760208..760338))	Theileria annulata	3865394
TA04135	CDS	TA04135	NC_011100.1	760641	761625	D	note; Tap-24g11.q1c.cand.146 - score = 12.51; uncharacterized protein	join(760641..760748,760779..760920,760994..761059,761122..761190,761411..761625)	Theileria annulata	3865395
TA04140	CDS	TA04140	NC_011100.1	761946	762483	R	note; Tap-24g11.q1c.C.cand.103 - score = 12.07; uncharacterized protein	complement(join(761946..762200,762286..762483))	Theileria annulata	3865396
TA04155	CDS	TA04155	NC_011100.1	762785	763417	D	note; Tap-24g11.q1c.cand.147 - score = 15.12; Signal peptide predicted for TA04155 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.832 between residues 18 and 19; GPI-Anchor Signal predicted for TA04155 by DGPI v2.04, no cleavage site predicted; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative	762785..763417	Theileria annulata	3865399
TA04160	CDS	TA04160	NC_011100.1	763497	764829	R	note; Tap-24g11.q1c.C.cand.102 - score = 23.66; uncharacterized protein	complement(join(763497..763844,763972..764117,764199..764829))	Theileria annulata	3865020
TA04165	CDS	TA04165	NC_011100.1	765431	770524	D	note; Tap-24g11.q1c.cand.148 - score = 121.79; uncharacterized protein	765431..770524	Theileria annulata	3865021
TA04170	CDS	TA04170	NC_011100.1	770583	773777	R	note; Tap-24g11.q1c.C.cand.101 - score = 42.77; 12 probable transmembrane helices predicted for TA04170 by TMHMM2.0 at aa 343-362, 369-391, 411-433, 519-538, 543-565, 627-649, 691-713, 726-748, 763-781, 788-807, 822-844 and 950-972; uncharacterized protein	complement(join(770583..770702,770772..772876,772961..773777))	Theileria annulata	3865022
TA04175	CDS	TA04175	NC_011100.1	774650	774898	D	1 probable transmembrane helix predicted for TA04175 by TMHMM2.0 at aa 49-71; protein translocation complex subunit (SEC61 gamma chain), putative	774650..774898	Theileria annulata	3865023
TA04180	CDS	TA04180	NC_011100.1	775276	775808	D	note; Tap-24g11.q1c.cand.149 - score = 7.74; 60S ribosomal protein L37a(e), putative	join(775276..775296,775390..775500,775656..775808)	Theileria annulata	3865024
TA04185	CDS	TA04185	NC_011100.1	775873	776560	R	note; Tap-24g11.q1c.C.cand.100 - score = 13.89; uncharacterized protein	complement(join(775873..776112,776219..776560))	Theileria annulata	3865025
TA04190	CDS	TA04190	NC_011100.1	777477	778967	D	note; Tap-24g11.q1c.cand.150 - score = 37.57; DEAD-box family helicase, putative	join(777477..778509,778645..778967)	Theileria annulata	3865026
TA04195	CDS	TA04195	NC_011100.1	779512	780875	R	9 probable transmembrane helices predicted for TA04195 by TMHMM2.0 at aa 7-24, 34-56, 69-91, 95-114, 127-149, 183-205, 225-247, 262-284 and 291-313; membrane transporter, putative	complement(join(779512..779651,779731..779925,780118..780252,780295..780471,780557..780875))	Theileria annulata	3865027
TA04200	CDS	TA04200	NC_011100.1	781268	786261	D	note; Tap-24g11.q1c.cand.151 - score = 80.99; 12 probable transmembrane helices predicted for TA04200 by TMHMM2.0 at aa 84-102, 152-174, 313-335, 339-358, 572-594, 609-631, 1344-1366, 1376-1393, 1414-1436, 1456-1478, 1491-1511 and 1531-1553; cation-transporting ATPase, putative	join(781268..781343,781401..781489,781516..781569,781634..785307,785425..785612,785669..786261)	Theileria annulata	3865028
TA04210	CDS	TA04210	NC_011100.1	786356	787951	R	note; Tap-24g11.q1c.C.cand.98 - score = 34.21; uncharacterized protein	complement(786356..787951)	Theileria annulata	3865030
TA04215	CDS	TA04215	NC_011100.1	788037	792525	R	note; Tap-24g11.q1c.C.cand.97 - score = 65.60; uncharacterized protein	complement(join(788037..788092,788124..788187,788220..788526,788612..792525))	Theileria annulata	3865031
TA04220	CDS	TA04220	NC_011100.1	793084	793446	D	note; Tap-24g11.q1c.cand.153 - score = 8.86; 1 probable transmembrane helix predicted for TA04220 by TMHMM2.0 at aa 101-119; uncharacterized protein	793084..793446	Theileria annulata	3865032
TA04225	CDS	TA04225	NC_011100.1	793578	796334	R	note; Tap-24g11.q1c.C.cand.96 - score = 47.46; 1 probable transmembrane helix predicted for TA04225 by TMHMM2.0 at aa 32-51; Signal anchor predicted for TA04225 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.813) with cleavage site probability 0.001 between residues 48 and 49; uncharacterized protein	complement(793578..796334)	Theileria annulata	3865033
TA04230	CDS	TA04230	NC_011100.1	796581	801582	D	note; Tap-24g11.q1c.cand.154 - score = 103.49; uncharacterized protein	join(796581..796610,796717..796935,796967..797046,797076..797259,797286..797398,797430..797508,797571..797891,797920..798022,798052..798416,798498..798968,798999..799334,799366..799448,799481..799611,799641..799702,799733..799785,799818..799992,800027..800070,800213..801374,801406..801582)	Theileria annulata	3865034
TA04235	CDS	TA04235	NC_011100.1	801801	803156	R	note; Tap-24g11.q1c.C.cand.95 - score = 14.17; 10 probable transmembrane helices predicted for TA04235 by TMHMM2.0 at aa 21-43, 115-137, 149-171, 176-198, 211-233, 265-287, 300-322, 345-367, 388-410 and 420-442; Tpr-related protein family member, putative	complement(801801..803156)	Theileria annulata	3865035
TA04240	CDS	TA04240	NC_011100.1	803354	805534	R	note; Tap-24g11.q1c.C.cand.94 - score = 47.70; 9 probable transmembrane helices predicted for TA04240 by TMHMM2.0 at aa 10-29, 84-106, 116-138, 145-167, 182-204, 276-298, 603-625, 646-668 and 673-695; Tpr-related protein family member, putative	complement(803354..805534)	Theileria annulata	3865036
TA04245	CDS	TA04245	NC_011100.1	805705	806938	R	note; Tap-24g11.q1c.C.cand.94 - score = 47.70; 1 probable transmembrane helix predicted for TA04245 by TMHMM2.0 at aa 278-300; syntaxin, putative	complement(join(805705..805792,805826..805977,806026..806484,806538..806623,806660..806702,806849..806938))	Theileria annulata	3865037
TA04250	CDS	TA04250	NC_011100.1	807295	810149	D	note; Tap-24g11.q1c.cand.156 - score = 63.08; uncharacterized protein	join(807295..807429,807476..807576,807610..809700,809792..810149)	Theileria annulata	3865038
TA04255	CDS	TA04255	NC_011100.1	810266	811111	R	note; Tap-24g11.q1c.C.cand.93 - score = 20.34; uncharacterized protein	complement(810266..811111)	Theileria annulata	3865039
TA04260	CDS	TA04260	NC_011100.1	811369	811987	R	uncharacterized protein	complement(join(811369..811857,811892..811987))	Theileria annulata	3864791
TA04265	CDS	TA04265	NC_011100.1	812054	814577	R	note; Tap-24g11.q1c.C.cand.92 - score = 73.12; 3'-5' exonuclease, putative	complement(join(812054..812191,812260..812647,812731..814577))	Theileria annulata	3864792
TA04270	CDS	TA04270	NC_011100.1	814899	815358	R	note; Tap-24g11.q1c.C.cand.91 - score = 51.97; small nuclear ribonucleoprotein (E), putative	complement(join(814899..815036,815133..815222,815311..815358))	Theileria annulata	3864793
TA04275	CDS	TA04275	NC_011100.1	815548	817345	R	note; Tap-24g11.q1c.C.cand.91 - score = 51.97; lysine-tRNA ligase, putative	complement(join(815548..815721,815805..815931,815984..816069,816099..816235,816287..816403,816440..816541,816573..816808,816879..817050,817084..817345))	Theileria annulata	3864794
TA04280	CDS	TA04280	NC_011100.1	817861	818733	D	note; Tap-24g11.q1c.cand.157 - score = 44.63; uncharacterized protein	join(817861..818215,818278..818348,818394..818480,818550..818620,818652..818733)	Theileria annulata	3864795
TA04285	CDS	TA04285	NC_011100.1	818896	819840	D	note; Tap-24g11.q1c.cand.157 - score = 44.63; uncharacterized protein	818896..819840	Theileria annulata	3864796
TA04290	CDS	TA04290	NC_011100.1	819911	820599	R	note; Tap-24g11.q1c.C.cand.90 - score = 19.91; uncharacterized protein	complement(join(819911..820190,820224..820531,820561..820599))	Theileria annulata	3864797
TA04295	CDS	TA04295	NC_011100.1	820883	821932	D	note; Tap-24g11.q1c.cand.158 - score = 21.45; uncharacterized protein	820883..821932	Theileria annulata	3864798
TA04300	CDS	TA04300	NC_011100.1	822352	823886	D	note; Tap-24g11.q1c.cand.159 - score = 32.49; uncharacterized protein	join(822352..822696,822750..823448,823551..823886)	Theileria annulata	3864799
TA04305	CDS	TA04305	NC_011100.1	823961	828265	R	note; Tap-24g11.q1c.C.cand.89 - score = 90.99; uncharacterized protein	complement(join(823961..824643,824719..826617,826696..828265))	Theileria annulata	3864800
TA04320	CDS	TA04320	NC_011100.1	828536	831874	D	note; Tap-24g11.q1c.cand.160 - score = 63.88; DEAD-box family helicase, putative	join(828536..829510,829580..830252,830286..830423,830471..830851,830961..831647,831723..831874)	Theileria annulata	3864803
TA04325	CDS	TA04325	NC_011100.1	832062	836624	R	note; Tap-24g11.q1c.C.cand.88 - score = 98.86; DNA repair (RAD6) endonuclease, putative	complement(join(832062..833033,833065..833155,833223..833344,833455..834871,834958..836624))	Theileria annulata	3864804
TA04330	CDS	TA04330	NC_011100.1	836899	837795	D	note; Tap-24g11.q1c.cand.162 - score = 19.16; uncharacterized protein	join(836899..836938,836980..837064,837159..837339,837421..837795)	Theileria annulata	3864805
TA04335	CDS	TA04335	NC_011100.1	838246	840555	D	note; Tap-24g11.q1c.cand.163 - score = 57.33; 7 probable transmembrane helices predicted for TA04335 by TMHMM2.0 at aa 368-390, 410-432, 447-469, 579-601, 606-623, 628-650 and 738-760; uncharacterized protein	838246..840555	Theileria annulata	3864806
TA04340	CDS	TA04340	NC_011100.1	840705	841767	D	note; Tap-24g11.q1c.cand.163 - score = 57.33; RNA processing factor, putative	join(840705..840725,840802..841148,841231..841303,841332..841455,841490..841650,841690..841767)	Theileria annulata	3864807
TA04345	CDS	TA04345	NC_011100.1	842113	842994	R	note; 1 probable transmembrane helix predicted for TA04345 by TMHMM2.0 at aa 213-235; uncharacterized protein	complement(join(842113..842151,842254..842994))	Theileria annulata	3864808
TA04350	CDS	TA04350	NC_011100.1	843238	844955	R	1 probable transmembrane helix predicted for TA04350 by TMHMM2.0 at aa 7-29; uncharacterized protein	complement(join(843238..844891,844930..844955))	Theileria annulata	3864809
TA04355	CDS	TA04355	NC_011100.1	845076	848108	R	note; Tap-24g11.q1c.C.cand.87 - score = 121.92; uncharacterized protein	complement(845076..848108)	Theileria annulata	3865227
TA04365	CDS	TA04365	NC_011100.1	850560	853947	D	note; Tap-24g11.q1c.cand.165 - score = 83.06; uncharacterized protein	join(850560..852395,852476..853431,853521..853947)	Theileria annulata	3865228
TA04370	CDS	TA04370	NC_011100.1	854637	856535	D	12 probable transmembrane helices predicted for TA04370 by TMHMM2.0 at aa 32-54, 64-86, 99-118, 128-150, 171-190, 195-213, 245-264, 274-296, 305-324, 339-361, 374-393 and 408-430; uncharacterized protein	join(854637..854826,854907..855133,855229..855390,855425..855598,855701..856289,856376..856424,856472..856535)	Theileria annulata	3865229
TA04375	CDS	TA04375	NC_011100.1	856692	857513	D	note; Tap-24g11.q1c.cand.166 - score = 29.44; Signal peptide predicted for TA04375 by SignalP 2.0 HMM (Signal peptide probability 0.706, signal anchor probability 0.161) with cleavage site probability 0.272 between residues 27 and 28; prohibitin, putative	856692..857513	Theileria annulata	3865230
TA04380	CDS	TA04380	NC_011100.1	857662	859075	R	note; Tap-24g11.q1c.C.cand.86 - score = 21.87; 4 probable transmembrane helices predicted for TA04380 by TMHMM2.0 at aa 212-234, 288-310, 339-361 and 391-413; uncharacterized protein	complement(join(857662..857888,857962..859075))	Theileria annulata	3865231
TA04385	CDS	TA04385	NC_011100.1	859245	861870	D	note; Tap-24g11.q1c.cand.167 - score = 51.49; 1 probable transmembrane helix predicted for TA04385 by TMHMM2.0 at aa 692-714; neutral sphingomyelinase, putative	join(859245..859737,859850..860420,860549..861111,861233..861486,861601..861870)	Theileria annulata	3865232
TA04390	CDS	TA04390	NC_011100.1	861911	863315	D	note; Tap-24g11.q1c.cand.167 - score = 51.49; 2 probable transmembrane helices predicted for TA04390 by TMHMM2.0 at aa 5-27 and 188-210; Signal peptide predicted for TA04390 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.002) with cleavage site probability 0.438 between residues 22 and 23; uncharacterized protein	join(861911..862058,862100..862602,862640..862742,862777..863315)	Theileria annulata	3865233
TA04395	CDS	TA04395	NC_011100.1	863412	865258	R	note; Tap-24g11.q1c.C.cand.85 - score = 26.90; 2 probable transmembrane helices predicted for TA04395 by TMHMM2.0 at aa 5-27 and 462-479; GPI-Anchor Signal predicted for TA04395 by DGPI v2.04, no cleavage site predicted; oxidoreductin, putative	complement(join(863412..863648,863788..863908,863994..864419,864567..865258))	Theileria annulata	3865234
TA04400	CDS	TA04400	NC_011100.1	865707	866446	D	mitochondrial import inner membrane translocase subunit, putative	join(865707..865884,866023..866269,866371..866446)	Theileria annulata	3865235
TA04405	CDS	TA04405	NC_011100.1	866494	867925	R	1 probable transmembrane helix predicted for TA04405 by TMHMM2.0 at aa 13-35; uncharacterized protein	complement(join(866494..866646,866756..866843,866927..867149,867410..867482,867564..867634,867733..867835,867875..867925))	Theileria annulata	3865236
TA04410	CDS	TA04410	NC_011100.1	868009	869565	R	note; Tap-24g11.q1c.C.cand.83 - score = 31.76; uncharacterized protein	complement(868009..869565)	Theileria annulata	3865237
TA04415	CDS	TA04415	NC_011100.1	869814	870718	D	note; Tap-24g11.q1c.cand.169 - score = 13.30; uncharacterized protein	join(869814..869844,869961..870123,870236..870396,870522..870718)	Theileria annulata	3865238
TA04430	CDS	TA04430	NC_011100.1	870909	873686	R	note; Tap-24g11.q1c.C.cand.82 - score = 49.91; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA04430 by SignalP 2.0 HMM (Signal peptide probability 0.781, signal anchor probability 0.013) with cleavage site probability 0.664 between residues 21 and 22; leucyl-tRNA synthetase, putative	complement(870909..873686)	Theileria annulata	3865241
TA04435	CDS	TA04435	NC_011100.1	874040	875677	D	note; Tap-24g11.q1c.cand.170 - score = 16.13; uncharacterized protein	join(874040..874113,874231..874378,874487..874739,874915..875178,875304..875677)	Theileria annulata	3865242
TA04440	CDS	TA04440	NC_011100.1	875971	876381	D	2 probable transmembrane helices predicted for TA04440 by TMHMM2.0 at aa 7-29 and 74-96; U6 snRNA-associated Sm-like protein, putative	join(875971..876022,876092..876381)	Theileria annulata	3865243
TA04445	CDS	TA04445	NC_011100.1	876448	877421	R	uncharacterized protein	complement(join(876448..876647,876675..876957,877086..877421))	Theileria annulata	3865244
TA04450	CDS	TA04450	NC_011100.1	877893	879796	D	note; Tap-24g11.q1c.cand.171 - score = 49.51; 1 probable transmembrane helix predicted for TA04450 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA04450 by SignalP 2.0 HMM (Signal peptide probability 0.785, signal anchor probability 0.190) with cleavage site probability 0.384 between residues 26 and 27; protein disulfide isomerase, putative	join(877893..878089,878187..878385,878489..879224,879312..879796)	Theileria annulata	3865245
TA04455	CDS	TA04455	NC_011100.1	880123	880948	D	note; Tap-24g11.q1c.cand.172 - score = 9.76; dehydrodolichyl diphosphate synthase, putative	join(880123..880257,880321..880463,880576..880692,880726..880948)	Theileria annulata	3865246
TA04460	CDS	TA04460	NC_011100.1	881419	882488	D	note; Tap-24g11.q1c.cand.173 - score = 13.73; 4 probable transmembrane helices predicted for TA04460 by TMHMM2.0 at aa 22-44, 187-209, 224-246 and 291-313; Tpr-related protein family member, putative	join(881419..881825,881882..882488)	Theileria annulata	3865266
TA04465	CDS	TA04465	NC_011100.1	882649	884223	D	note; Tap-24g11.q1c.cand.174 - score = 16.66; 11 probable transmembrane helices predicted for TA04465 by TMHMM2.0 at aa 26-48, 77-99, 143-165, 177-199, 204-226, 239-261, 297-319, 332-350, 379-401, 421-443 and 448-470; Tpr-related protein family member, putative	882649..884223	Theileria annulata	3865267
TA04470	CDS	TA04470	NC_011100.1	884293	885693	R	note; Tap-24g11.q1c.C.cand.80 - score = 26.02; uncharacterized protein	complement(884293..885693)	Theileria annulata	3865268
TA04475	CDS	TA04475	NC_011100.1	886642	887453	R	note; Tap-24g11.q1c.C.cand.79 - score = 16.04; uncharacterized protein	complement(join(886642..886801,886843..886935,886967..887013,887181..887275,887351..887453))	Theileria annulata	3865269
TA04485	CDS	TA04485	NC_011100.1	887606	889888	D	note; DNA primase large subunit, putative	join(887606..887762,887851..887940,887976..888144,888181..888334,888386..888520,888547..888604,888636..888693,888777..888960,889001..889053,889109..889164,889196..889235,889323..889416,889483..889573,889645..889740,889791..889888)	Theileria annulata	3865271
TA04490	CDS	TA04490	NC_011100.1	890126	898298	D	Tap-24g11.q1c.cand.176 - score = 191.21; SfiI-subtelomeric fragment related protein family member, putative	join(890126..890220,890258..898298)	Theileria annulata	3865272
TA04495	CDS	TA04495	NC_011100.1	899333	900622	R	note; Tap-24g11.q1c.C.cand.78 - score = 25.56; uncharacterized protein	complement(join(899333..899585,899729..900332,900387..900434,900466..900622))	Theileria annulata	3865273
TA04500	CDS	TA04500	NC_011100.1	901081	902826	D	note; Tap-24g11.q1c.cand.177 - score = 34.75; phosphatidylinositol-4-phosphate (PIP) 5-kinase, putative	join(901081..901177,901274..901485,901557..901683,901721..901823,901929..902015,902047..902132,902255..902826)	Theileria annulata	3865274
TA04505	CDS	TA04505	NC_011100.1	902991	903194	R	note; Tap-24g11.q1c.C.cand.77 - score = 7.03; 40S ribosomal protein S28, putative	complement(902991..903194)	Theileria annulata	3865275
TA04510	CDS	TA04510	NC_011100.1	903563	904335	R	note; Tap-24g11.q1c.C.cand.76 - score = 37.97; U3 small nucleolar ribonucleoprotein or 40S ribosomal protein S4-like, putative	complement(join(903563..903735,903801..903955,904027..904134,904202..904335))	Theileria annulata	3865276
TA04515	CDS	TA04515	NC_011100.1	904467	905792	R	note; Tap-24g11.q1c.C.cand.76 - score = 37.97; uncharacterized protein	complement(join(904467..905020,905060..905237,905284..905570,905639..905792))	Theileria annulata	3865277
TA04520	CDS	TA04520	NC_011100.1	905936	907320	D	note; Tap-24g11.q1c.cand.178 - score = 13.36; 4 probable transmembrane helices predicted for TA04520 by TMHMM2.0 at aa 64-86, 101-123, 204-226 and 268-290; mitochondrial carrier, putative	join(905936..905948,906044..906319,906377..906458,906522..906721,906860..906946,907005..907081,907138..907320)	Theileria annulata	3865278
TA04525	CDS	TA04525	NC_011100.1	907534	908893	D	note; Tap-24g11.q1c.cand.179 - score = 27.73; replication factor, putative	join(907534..907668,907792..907898,907931..908054,908167..908301,908334..908435,908495..908560,908591..908662,908735..908893)	Theileria annulata	3865279
TA04530	CDS	TA04530	NC_011100.1	909283	911218	R	note; Tap-24g11.q1c.C.cand.75 - score = 42.26; DEAD-box family (RNA) helicase, putative	complement(join(909283..910068,910127..910223,910330..910985,911057..911218))	Theileria annulata	3865280
TA04535	CDS	TA04535	NC_011100.1	911379	912378	D	note; Tap-24g11.q1c.cand.180 - score = 28.00; uncharacterized protein	join(911379..911903,911990..912087,912149..912189,912224..912378)	Theileria annulata	3865281
TA04540	CDS	TA04540	NC_011100.1	912499	915437	R	note; Tap-24g11.q1c.C.cand.74 - score = 65.90; spliceosome-associated protein, putative	complement(join(912499..912651,912681..912724,912986..913182,913251..913392,913459..913519,913550..913747,913835..913896,913947..914179,914209..914762,914827..914901,914932..915068,915109..915289,915354..915437))	Theileria annulata	3865282
TA04545	CDS	TA04545	NC_011100.1	915609	916214	R	note; Tap-24g11.q1c.C.cand.73 - score = 12.23; 1 probable transmembrane helix predicted for TA04545 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA04545 by SignalP 2.0 HMM (Signal peptide probability 0.831, signal anchor probability 0.023) with cleavage site probability 0.659 between residues 21 and 22; uncharacterized protein	complement(join(915609..915733,915781..915811,915869..915976,916071..916214))	Theileria annulata	3865283
TA04550	CDS	TA04550	NC_011100.1	917997	920169	D	note; Tap-24g11.q1c.cand.181 - score = 54.59; uncharacterized protein	join(917997..918891,918959..920169)	Theileria annulata	3865284
TA04555	CDS	TA04555	NC_011100.1	920631	922732	D	note; Tap-24g11.q1c.cand.182 - score = 46.26; uncharacterized protein	join(920631..921009,921043..922290,922349..922548,922580..922732)	Theileria annulata	3864889
TA04560	CDS	TA04560	NC_011100.1	922910	923125	D	uncharacterized protein	922910..923125	Theileria annulata	3864890
TA04565	CDS	TA04565	NC_011100.1	923424	924743	D	note; Tap-24g11.q1c.cand.183 - score = 38.90; 10 probable transmembrane helices predicted for TA04565 by TMHMM2.0 at aa 28-50, 63-85, 89-111, 161-178, 191-213, 243-265, 285-307, 319-341, 356-378 and 411-433; GPI-Anchor Signal predicted for TA04565 by DGPI v2.04 with cleavage site probability 0.2924 near 402; uncharacterized protein	923424..924743	Theileria annulata	3864891
TA04570	CDS	TA04570	NC_011100.1	925069	925805	D	note; Tap-24g11.q1c.cand.184 - score = 21.33; 1 probable transmembrane helix predicted for TA04570 by TMHMM2.0 at aa 133-155; uncharacterized protein	join(925069..925216,925258..925805)	Theileria annulata	3864892
TA04575	CDS	TA04575	NC_011100.1	925900	927769	R	note; Tap-24g11.q1c.C.cand.70 - score = 41.34; DNA helicase (ruvB-like protein), putative	complement(join(925900..925965,925997..926076,926108..926252,926319..926745,926783..927273,927376..927494,927619..927769))	Theileria annulata	3864893
TA04580	CDS	TA04580	NC_011100.1	927953	928648	R	note; Tap-24g11.q1c.C.cand.69 - score = 14.60; 2 probable transmembrane helices predicted for TA04580 by TMHMM2.0 at aa 15-37 and 95-117; uncharacterized protein	complement(join(927953..928298,928333..928415,928466..928648))	Theileria annulata	3864894
TA04590	CDS	TA04590	NC_011100.1	928980	930115	D	note; Tap-24g11.q1c.cand.185 - score = 25.19; proliferating cell nuclear antigen (PCNA) 1, putative	join(928980..929142,929313..929468,929508..929788,929822..929878,929948..930115)	Theileria annulata	3864896
TA04595	CDS	TA04595	NC_011100.1	930232	931177	R	note; Tap-24g11.q1c.C.cand.68 - score = 27.94; proteasome subunit, putative	complement(join(930232..930292,930322..930523,930599..930946,931099..931177))	Theileria annulata	3864897
TA04600	CDS	TA04600	NC_011100.1	931319	932564	R	note; Tap-24g11.q1c.C.cand.67 - score = 33.70; nucleosome assembly protein, putative	complement(join(931319..931438,931518..931574,931619..931699,931804..932166,932198..932338,932369..932436,932516..932564))	Theileria annulata	3864898
TA04605	CDS	TA04605	NC_011100.1	933326	934162	D	note; Tap-24g11.q1c.cand.186 - score = 8.48; ubiquitin-conjugating enzyme E2, putative	join(933326..933349,933392..933495,933699..933768,933851..933998,934065..934162)	Theileria annulata	3864899
TA04610	CDS	TA04610	NC_011100.1	934219	934668	R	note; Tap-24g11.q1c.C.cand.66 - score = 12.23; uncharacterized protein	complement(join(934219..934402,934436..934668))	Theileria annulata	3864900
TA04615	CDS	TA04615	NC_011100.1	935228	938703	D	note; Tap-24g11.q1c.cand.187 - score = 75.08; 1 probable transmembrane helix predicted for TA04615 by TMHMM2.0 at aa 92-114; uncharacterized protein	join(935228..935553,935618..936717,936788..936979,937076..938703)	Theileria annulata	3864901
TA04620	CDS	TA04620	NC_011100.1	939054	942218	R	note; Tap-24g11.q1c.C.cand.64 - score = 69.15; uncharacterized protein	complement(join(939054..941644,941814..941909,941976..942041,942088..942153,942188..942218))	Theileria annulata	3864902
TA04625	CDS	TA04625	NC_011100.1	942601	943777	R	note; Tap-24g11.q1c.C.cand.63 - score = 37.71; uncharacterized protein	complement(join(942601..942936,942970..943140,943317..943396,943433..943548,943593..943701,943747..943777))	Theileria annulata	3864903
TA04630	CDS	TA04630	NC_011100.1	943873	945652	R	note; Tap-24g11.q1c.C.cand.62 - score = 52.90; uncharacterized protein	complement(join(943873..944398,944542..944740,944768..944867,944900..945108,945139..945652))	Theileria annulata	3864904
TA04635	CDS	TA04635	NC_011100.1	946050	947437	R	note; Tap-24g11.q1c.C.cand.61 - score = 36.17; 6 probable transmembrane helices predicted for TA04635 by TMHMM2.0 at aa 126-148, 153-172, 177-199, 226-248, 253-275 and 346-363; Signal peptide predicted for TA04635 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.954 between residues 23 and 24; uncharacterized protein	complement(join(946050..946246,946278..946378,946408..946546,946576..946672,946702..946980,947011..947045,947078..947179,947212..947437))	Theileria annulata	3864905
TA04650	CDS	TA04650	NC_011100.1	947737	948764	D	note; Tap-24g11.q1c.cand.189 - score = 17.63; deaminase, putative	join(947737..948194,948247..948296,948379..948764)	Theileria annulata	3864908
TA04655	CDS	TA04655	NC_011100.1	949516	951138	D	note; Tap-24g11.q1c.cand.190 - score = 33.10; 2 probable transmembrane helices predicted for TA04655 by TMHMM2.0 at aa 128-150 and 157-179; uncharacterized protein	join(949516..949983,950045..950121,950174..950341,950378..950452,950544..951138)	Theileria annulata	3865362
TA04660	CDS	TA04660	NC_011100.1	951280	952251	R	note; Tap-24g11.q1c.C.cand.60 - score = 21.17; uncharacterized protein	complement(951280..952251)	Theileria annulata	3865363
TA04665	CDS	TA04665	NC_011100.1	952715	955781	R	note; Tap-24g11.q1c.C.cand.59 - score = 83.46; uncharacterized protein	complement(join(952715..955191,955235..955781))	Theileria annulata	3865364
TA04670	CDS	TA04670	NC_011100.1	956974	958545	R	note; Tap-24g11.q1c.C.cand.58 - score = 23.52; Signal peptide predicted for TA04670 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(956974..958545)	Theileria annulata	3865365
TA09460	CDS	TA09460	NC_011100.1	959194	960765	R	weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09460 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(959194..960765)	Theileria annulata	3864665
TA09465	CDS	TA09465	NC_011100.1	961701	963269	R	weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09465 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(961701..963269)	Theileria annulata	3864666
TA09470	CDS	TA09470	NC_011100.1	963920	965491	R	weak similarity to Theileria annulata Tash1; 2 probable transmembrane helices predicted for TA09470 by TMHMM2.0 at aa 4-22 and 203-225; Signal peptide predicted for TA09470 by SignalP 2.0 HMM (Signal peptide probability 0.957, signal anchor probability 0.000) with cleavage site probability 0.906 between residues 18 and 19; uncharacterized protein	complement(963920..965491)	Theileria annulata	3864667
TA09475	CDS	TA09475	NC_011100.1	966427	967995	R	weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09475 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(966427..967995)	Theileria annulata	3864668
TA09480	CDS	TA09480	NC_011100.1	968933	970504	R	weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09480 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(968933..970504)	Theileria annulata	3864669
TA09485	CDS	TA09485	NC_011100.1	971441	973000	R	weak similarity to Theileria annulata Tash1; 2 probable transmembrane helices predicted for TA09485 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA09485 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(971441..973000)	Theileria annulata	3864670
TA09490	CDS	TA09490	NC_011100.1	973939	975504	R	weak similarity to Theileria annulata Tash1; 2 probable transmembrane helices predicted for TA09490 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA09490 by SignalP 2.0 HMM (Signal peptide probability 0.957, signal anchor probability 0.000) with cleavage site probability 0.906 between residues 18 and 19; uncharacterized protein	complement(973939..975504)	Theileria annulata	3864671
TA09495	CDS	TA09495	NC_011100.1	976189	978279	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA09495 by SignalP 2.0 HMM (Signal peptide probability 0.826, signal anchor probability 0.017) with cleavage site probability 0.607 between residues 17 and 18; methionine aminopeptidase, putative	join(976189..976448,976478..976771,976803..977723,977804..977915,977944..978086,978162..978279)	Theileria annulata	3864672
TA09500	CDS	TA09500	NC_011100.1	978446	980023	R	Signal peptide predicted for TA09500 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(978446..980023)	Theileria annulata	3865305
TA04675	CDS	TA04675	NC_011100.1	980905	982481	R	note; Tap-24g11.q1c.C.cand.57 - score = 33.43; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA04675 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(join(980905..981784,981817..982481))	Theileria annulata	3865366
TA04680	CDS	TA04680	NC_011100.1	983319	984890	R	Signal peptide predicted for TA04680 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(983319..984890)	Theileria annulata	3865367
TA04685	CDS	TA04685	NC_011100.1	985825	987399	R	note; Tap-24g11.q1c.C.cand.55 - score = 22.55; Signal peptide predicted for TA04685 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(985825..987399)	Theileria annulata	3865368
TA04690	CDS	TA04690	NC_011100.1	988334	989905	R	note; Tap-24g11.q1c.C.cand.54 - score = 22.92; 2 probable transmembrane helices predicted for TA04690 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA04690 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(988334..989905)	Theileria annulata	3865369
TA04695	CDS	TA04695	NC_011100.1	990842	992407	R	note; Tap-24g11.q1c.C.cand.53 - score = 23.67; 2 probable transmembrane helices predicted for TA04695 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA04695 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein	complement(join(990842..991724,991758..992407))	Theileria annulata	3865370
TA04705	CDS	TA04705	NC_011100.1	993937	995528	R	note; Tap-24g11.q1c.C.cand.52 - score = 27.79; Signal peptide predicted for TA04705 by SignalP 2.0 HMM (Signal peptide probability 0.782, signal anchor probability 0.000) with cleavage site probability 0.307 between residues 19 and 20; uncharacterized protein	complement(join(993937..994807,994876..995528))	Theileria annulata	3865372
TA04710	CDS	TA04710	NC_011100.1	996373	997169	D	note; Tap-24g11.q1c.cand.191 - score = 20.35; uncharacterized protein	join(996373..996663,996708..996839,996883..996940,996970..997169)	Theileria annulata	3865373
TA04715	CDS	TA04715	NC_011100.1	997247	999896	R	note; Tap-24g11.q1c.C.cand.51 - score = 257.55; uncharacterized protein	complement(join(997247..998496,998576..999811,999842..999896))	Theileria annulata	3865374
TA04720	CDS	TA04720	NC_011100.1	999959	1005658	R	note; Tap-24g11.q1c.C.cand.51 - score = 257.55; uncharacterized protein	complement(join(999959..1000977,1001050..1005658))	Theileria annulata	3865375
TA04725	CDS	TA04725	NC_011100.1	1006024	1009728	R	note; Tap-24g11.q1c.C.cand.51 - score = 257.55; uncharacterized protein	complement(join(1006024..1009128,1009195..1009413,1009495..1009728))	Theileria annulata	3865376
TA04730	CDS	TA04730	NC_011100.1	1009979	1011294	D	note; Tap-24g11.q1c.cand.192 - score = 20.70; uncharacterized protein	join(1009979..1010222,1010305..1010528,1010558..1010641,1010670..1010769,1011004..1011056,1011086..1011205,1011235..1011294)	Theileria annulata	3865377
TA04735	CDS	TA04735	NC_011100.1	1011385	1011669	R	note; Tap-24g11.q1c.C.cand.50 - score = 13.84; high-mobility-group (HMG) protein, putative	complement(1011385..1011669)	Theileria annulata	3865378
TA04740	CDS	TA04740	NC_011100.1	1012545	1015514	D	note; Tap-24g11.q1c.cand.193 - score = 21.90; origin recognition complex protein 1, putative	join(1012545..1012845,1012980..1013167,1013329..1013508,1013699..1014147,1014310..1014476,1014558..1014648,1014743..1014962,1015065..1015514)	Theileria annulata	3865379
TA04745	CDS	TA04745	NC_011100.1	1015689	1016070	R	note; Tap-24g11.q1c.C.cand.49 - score = 12.63; uncharacterized protein	complement(join(1015689..1015878,1015919..1016070))	Theileria annulata	3865380
TA04750	CDS	TA04750	NC_011100.1	1016779	1018890	R	note; Tap-24g11.q1c.C.cand.48 - score = 32.59; uncharacterized protein	complement(1016779..1018890)	Theileria annulata	3865285
TA04755	CDS	TA04755	NC_011100.1	1019165	1020873	R	note; Tap-24g11.q1c.C.cand.47 - score = 22.84; uncharacterized protein	complement(join(1019165..1019819,1019933..1020873))	Theileria annulata	3865286
TA04760	CDS	TA04760	NC_011100.1	1020991	1022034	D	note; Tap-24g11.q1c.cand.194 - score = 16.59; uncharacterized protein	join(1020991..1021006,1021073..1021183,1021299..1021380,1021413..1021596,1021689..1021779,1021874..1022034)	Theileria annulata	3865287
TA04765	CDS	TA04765	NC_011100.1	1022963	1025516	R	note; Tap-24g11.q1c.C.cand.46 - score = 39.19; DEAD-box family (RNA) helicase, putative	complement(join(1022963..1023131,1023215..1025315,1025393..1025516))	Theileria annulata	3865288
TA04770	CDS	TA04770	NC_011100.1	1026425	1032381	D	note; Tap-24g11.q1c.cand.195 - score = 47.36; 8 probable transmembrane helices predicted for TA04770 by TMHMM2.0 at aa 550-572, 593-615, 1269-1291, 1298-1320, 1351-1373, 1380-1402, 1417-1439 and 1446-1468; P-type ATPase 2, putative	join(1026425..1026477,1026784..1026961,1027195..1027951,1028318..1029391,1029678..1031945,1032191..1032381)	Theileria annulata	3865289
TA04775	CDS	TA04775	NC_011100.1	1032697	1041253	R	note; Tap-24g11.q1c.C.cand.45 - score = 35.92; clathrin heavy chain, putative	complement(join(1032697..1033748,1033962..1035392,1035847..1036710,1037237..1038706,1039098..1039522,1039890..1040556,1040890..1041148,1041215..1041253))	Theileria annulata	3865290
TA04780	CDS	TA04780	NC_011100.1	1041522	1043924	D	note; Tap-24g11.q1c.cand.196 - score = 7.75; uncharacterized protein	join(1041522..1041627,1041692..1041863,1042153..1042243,1042378..1042560,1042741..1042917,1043621..1043701,1043775..1043924)	Theileria annulata	3865291
TA04785	CDS	TA04785	NC_011100.1	1044065	1044622	D	5 probable transmembrane helices predicted for TA04785 by TMHMM2.0 at aa 4-21, 28-50, 89-111, 118-137 and 160-182; Signal peptide predicted for TA04785 by SignalP 2.0 HMM (Signal peptide probability 0.906, signal anchor probability 0.094) with cleavage site probability 0.190 between residues 49 and 50; GPI-Anchor Signal predicted for TA04785 by DGPI v2.04 with cleavage site probability 0.59159994 near 156; Tpr-related protein family member, putative	1044065..1044622	Theileria annulata	3865292
TA04790	CDS	TA04790	NC_011100.1	1044659	1048376	D	note; Tap-24g11.q1c.cand.198 - score = 98.17; 3 probable transmembrane helices predicted for TA04790 by TMHMM2.0 at aa 12-34, 220-242 and 357-379; Tpr-related protein family member, putative	join(1044659..1045798,1045834..1046245,1046314..1048376)	Theileria annulata	3865293
TA04795	CDS	TA04795	NC_011100.1	1048467	1049440	D	note; Tap-24g11.q1c.cand.199 - score = 20.18; Signal peptide predicted for TA04795 by SignalP 2.0 HMM (Signal peptide probability 0.912, signal anchor probability 0.003) with cleavage site probability 0.360 between residues 16 and 17; uncharacterized protein	join(1048467..1048737,1048812..1049440)	Theileria annulata	3865294
TA04800	CDS	TA04800	NC_011100.1	1049710	1050121	D	note; Tap-24g11.q1c.cand.199 - score = 20.18; uncharacterized protein	join(1049710..1049973,1050008..1050121)	Theileria annulata	3865295
TA04810	CDS	TA04810	NC_011100.1	1050423	1052229	R	note; Tap-24g11.q1c.C.cand.41 - score = 22.29; 1 probable transmembrane helix predicted for TA04810 by TMHMM2.0 at aa 112-134; uncharacterized protein	complement(join(1050423..1050719,1050827..1050964,1051086..1051192,1051521..1051694,1051812..1052229))	Theileria annulata	3865297
TA04815	CDS	TA04815	NC_011100.1	1052813	1061159	D	note; Tap-24g11.q1c.cand.200 - score = 36.74; 2 probable transmembrane helices predicted for TA04815 by TMHMM2.0 at aa 576-595 and 683-705; uncharacterized protein	join(1052813..1052907,1053292..1053499,1053746..1053873,1054266..1054410,1054689..1054825,1055257..1055798,1056322..1059064,1059863..1061159)	Theileria annulata	3865298
TA04820	CDS	TA04820	NC_011100.1	1061595	1063668	R	note; Tap-24g11.q1c.C.cand.40 - score = 48.41; 3 probable transmembrane helices predicted for TA04820 by TMHMM2.0 at aa 33-55, 411-433 and 459-481; uncharacterized protein	complement(join(1061595..1062129,1062173..1063668))	Theileria annulata	3865299
TA04825	CDS	TA04825	NC_011100.1	1063755	1067598	R	5 probable transmembrane helices predicted for TA04825 by TMHMM2.0 at aa 2-21, 65-87, 147-169, 173-192 and 357-379; Signal peptide predicted for TA04825 by SignalP 2.0 HMM (Signal peptide probability 0.837, signal anchor probability 0.000) with cleavage site probability 0.244 between residues 15 and 16; GPI-Anchor Signal predicted for TA04825 by DGPI v2.04 with cleavage site probability 2.1199 near 1096; uncharacterized protein	complement(join(1063755..1064684,1064759..1065835,1065959..1066353,1066557..1066858,1066913..1067598))	Theileria annulata	3865300
TA04830	CDS	TA04830	NC_011100.1	1067609	1069071	R	note; Tap-24g11.q1c.C.cand.39 - score = 25.71; 4 probable transmembrane helices predicted for TA04830 by TMHMM2.0 at aa 5-22, 52-71, 83-105 and 120-142; Signal peptide predicted for TA04830 by SignalP 2.0 HMM (Signal peptide probability 0.721, signal anchor probability 0.110) with cleavage site probability 0.340 between residues 21 and 22; uncharacterized protein	complement(join(1067609..1068005,1068292..1068309,1068481..1068530,1068578..1068872,1068989..1069071))	Theileria annulata	3865301
TA04835	CDS	TA04835	NC_011100.1	1069377	1070555	R	note; Tap-24g11.q1c.C.cand.38 - score = 10.66; 1 probable transmembrane helix predicted for TA04835 by TMHMM2.0 at aa 7-24; uncharacterized protein	complement(join(1069377..1069532,1069587..1069714,1069807..1069902,1070080..1070347,1070436..1070555))	Theileria annulata	3865302
TA04840	CDS	TA04840	NC_011100.1	1070683	1071223	D	note; Tap-24g11.q1c.cand.203 - score = 34.96; 60S ribosomal L34 protein, putative	join(1070683..1070945,1071070..1071223)	Theileria annulata	3865303
TA04845	CDS	TA04845	NC_011100.1	1071593	1074905	D	aspartyl-tRNA synthetase, putative	join(1071593..1071764,1072016..1072121,1072314..1072536,1072592..1072645,1072960..1073442,1073661..1074372,1074766..1074905)	Theileria annulata	3865304
TA04855	CDS	TA04855	NC_011100.1	1076974	1080959	R	note; cell divison cycle CDC48 homologue or transitional endoplasmic reticulum ATPase	complement(join(1076974..1077248,1077436..1077611,1077681..1077924,1078333..1078878,1079130..1079480,1079587..1080021,1080269..1080959))	Theileria annulata	3864929
TA04865	CDS	TA04865	NC_011100.1	1081486	1085446	D	note; Tap-24g11.q1c.cand.204 - score = 28.31; DNA mismatch repair protein, putative	join(1081486..1081729,1082043..1082116,1082146..1082280,1082572..1082812,1083080..1083336,1083510..1084440,1084511..1084583,1084622..1084652,1084731..1085119,1085278..1085446)	Theileria annulata	3864931
TA04870	CDS	TA04870	NC_011100.1	1085657	1092625	D	note; Tap-24g11.q1c.cand.205 - score = 95.22; uncharacterized protein	1085657..1092625	Theileria annulata	3864932
TA04875	CDS	TA04875	NC_011100.1	1092847	1097933	R	note; Tap-24g11.q1c.C.cand.35 - score = 97.69; ubiquitin carboxyl-terminal hydrolase, putative	complement(join(1092847..1094885,1094999..1096273,1096421..1097933))	Theileria annulata	3864933
TA04880	CDS	TA04880	NC_011100.1	1098638	1099303	D	note; Tap-24g11.q1c.cand.206 - score = 15.20; uncharacterized protein	join(1098638..1098770,1098828..1098897,1098979..1099303)	Theileria annulata	3864934
TA04885	CDS	TA04885	NC_011100.1	1099328	1100428	R	note; Tap-24g11.q1c.C.cand.34 - score = 23.03; nucleolar protein, putative	complement(1099328..1100428)	Theileria annulata	3864935
TA04890	CDS	TA04890	NC_011100.1	1100613	1103393	D	note; Tap-24g11.q1c.cand.207 - score = 54.05; uncharacterized protein	1100613..1103393	Theileria annulata	3864936
TA04895	CDS	TA04895	NC_011100.1	1104039	1105520	D	note; Tap-24g11.q1c.cand.208 - score = 21.89; uncharacterized protein	1104039..1105520	Theileria annulata	3864937
TA04900	CDS	TA04900	NC_011100.1	1105953	1107166	R	geranylgeranyltransferase beta subunit, putative	complement(join(1105953..1106184,1106217..1106322,1106356..1106600,1106633..1106796,1106876..1107166))	Theileria annulata	3864938
TA04905	CDS	TA04905	NC_011100.1	1107360	1108683	D	note; Tap-24g11.q1c.cand.209 - score = 83.58; uncharacterized protein	join(1107360..1107454,1107502..1107617,1107647..1107809,1107839..1108323,1108355..1108401,1108444..1108683)	Theileria annulata	3864939
TA04910	CDS	TA04910	NC_011100.1	1108927	1110764	D	GTP-binding protein, putative	join(1108927..1109204,1109223..1109267,1109302..1109395,1109525..1109656,1109698..1110033,1110045..1110149,1110206..1110370,1110401..1110523,1110552..1110764)	Theileria annulata	3864940
TA04920	CDS	TA04920	NC_011100.1	1111068	1111402	R	note; Tap-24g11.q1c.C.cand.32 - score = 11.41; uncharacterized protein	complement(join(1111068..1111165,1111195..1111402))	Theileria annulata	3864942
TA04925	CDS	TA04925	NC_011100.1	1111507	1112121	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA04925 by TMHMM2.0 at aa 7-26 and 113-132; Signal peptide predicted for TA04925 by SignalP 2.0 HMM (Signal peptide probability 0.842, signal anchor probability 0.099) with cleavage site probability 0.597 between residues 23 and 24; uncharacterized protein	1111507..1112121	Theileria annulata	3864943
TA04930	CDS	TA04930	NC_011100.1	1112219	1113003	R	note; Tap-24g11.q1c.C.cand.31 - score = 19.33; uncharacterized protein	complement(join(1112219..1112902,1112938..1113003))	Theileria annulata	3864944
TA04935	CDS	TA04935	NC_011100.1	1113120	1114105	D	note; Tap-24g11.q1c.cand.210 - score = 37.61; 1 probable transmembrane helix predicted for TA04935 by TMHMM2.0 at aa 7-29; Signal anchor predicted for TA04935 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.997) with cleavage site probability 0.001 between residues 35 and 36; uncharacterized protein	join(1113120..1113214,1113264..1113567,1113607..1113792,1113825..1113873,1113903..1114105)	Theileria annulata	3864945
TA04940	CDS	TA04940	NC_011100.1	1114191	1116307	R	note; Tap-24g11.q1c.C.cand.30 - score = 45.99; 1 probable transmembrane helix predicted for TA04940 by TMHMM2.0 at aa 7-29; tRNA nucleotidyltransferase, putative	complement(join(1114191..1114337,1114370..1114528,1114587..1114698,1114728..1114809,1114858..1115137,1115209..1115774,1115806..1116307))	Theileria annulata	3864946
TA04945	CDS	TA04945	NC_011100.1	1116440	1117894	D	note; Tap-24g11.q1c.cand.211 - score = 27.95; uncharacterized protein	join(1116440..1116664,1116703..1116816,1116860..1116962,1117331..1117395,1117433..1117894)	Theileria annulata	3864947
TA04950	CDS	TA04950	NC_011100.1	1118151	1119074	R	note; Tap-24g11.q1c.C.cand.29 - score = 11.83; Apicoplast targetting peptide predicted by the PlasmoAP tool; 4 probable transmembrane helices predicted for TA04950 by TMHMM2.0 at aa 29-51, 61-83, 210-232 and 265-287; Signal anchor predicted for TA04950 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.911) with cleavage site probability 0.000 between residues 44 and 45; uncharacterized protein	complement(1118151..1119074)	Theileria annulata	3864692
TA04955	CDS	TA04955	NC_011100.1	1119321	1122423	R	note; Tap-24g11.q1c.C.cand.28 - score = 73.03; cGMP-dependent protein kinase, putative	complement(join(1119321..1119401,1119434..1119511,1119581..1119710,1119749..1119881,1119910..1120048,1120153..1120328,1120429..1120593,1120624..1120726,1120756..1122423))	Theileria annulata	3864693
TA04960	CDS	TA04960	NC_011100.1	1122650	1123937	R	note; Tap-24g11.q1c.C.cand.27 - score = 32.48; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA04960 by TMHMM2.0 at aa 7-26 and 384-406; Signal peptide predicted for TA04960 by SignalP 2.0 HMM (Signal peptide probability 0.704, signal anchor probability 0.182) with cleavage site probability 0.283 between residues 29 and 30; acid phosphatase, putative	complement(join(1122650..1123350,1123412..1123937))	Theileria annulata	3864694
TA04965	CDS	TA04965	NC_011100.1	1124142	1125397	R	note; Tap-24g11.q1c.C.cand.26 - score = 21.31; 5 probable transmembrane helices predicted for TA04965 by TMHMM2.0 at aa 5-22, 79-96, 227-249, 254-276 and 286-305; (Zn) transporter protein, putative	complement(join(1124142..1124542,1124728..1124930,1124970..1125024,1125056..1125205,1125259..1125397))	Theileria annulata	3864695
TA04980	CDS	TA04980	NC_011100.1	1125741	1127040	R	note; Tap-24g11.q1c.C.cand.25 - score = 20.06; 50S ribosomal protein L3, putative	complement(join(1125741..1126002,1126099..1126535,1126660..1126734,1126799..1126926,1126956..1127040))	Theileria annulata	3864698
TA04985	CDS	TA04985	NC_011100.1	1127296	1128755	R	note; Tap-24g11.q1c.C.cand.24 - score = 35.44; RNA-binding protein, putative	complement(join(1127296..1128009,1128038..1128142,1128204..1128383,1128534..1128755))	Theileria annulata	3864699
TA04990	CDS	TA04990	NC_011100.1	1129059	1129650	R	u6 snrna-associated sm-like protein lsm4, putative	complement(join(1129059..1129089,1129187..1129326,1129418..1129516,1129570..1129611,1129645..1129650))	Theileria annulata	3864700
TA04995	CDS	TA04995	NC_011100.1	1129935	1132664	D	note; Tap-24g11.q1c.cand.212 - score = 63.08; uncharacterized protein	join(1129935..1130729,1130759..1131146,1131206..1131343,1131373..1131521,1131553..1131708,1131765..1131943,1132040..1132260,1132291..1132382,1132413..1132664)	Theileria annulata	3864701
TA05000	CDS	TA05000	NC_011100.1	1132867	1134025	D	note; Tap-24g11.q1c.cand.212 - score = 63.08; Signal peptide predicted for TA05000 by SignalP 2.0 HMM (Signal peptide probability 0.772, signal anchor probability 0.167) with cleavage site probability 0.526 between residues 22 and 23; uncharacterized protein	join(1132867..1133820,1133876..1134025)	Theileria annulata	3864702
TA05005	CDS	TA05005	NC_011100.1	1134054	1135700	D	note; Tap-24g11.q1c.cand.213 - score = 28.01; uncharacterized protein	1134054..1135700	Theileria annulata	3864703
TA05010	CDS	TA05010	NC_011100.1	1135737	1139345	D	note; Tap-24g11.q1c.cand.214 - score = 52.27; 1 probable transmembrane helix predicted for TA05010 by TMHMM2.0 at aa 488-510; telomerase reverse transcriptase, putative	join(1135737..1135975,1136005..1136072,1136104..1139345)	Theileria annulata	3864704
TA05015	CDS	TA05015	NC_011100.1	1139515	1140090	R	note; Tap-24g11.q1c.C.cand.22 - score = 14.39; Signal peptide predicted for TA05015 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.978 between residues 17 and 18; uncharacterized protein	complement(1139515..1140090)	Theileria annulata	3864705
TA05020	CDS	TA05020	NC_011100.1	1140342	1142746	R	note; Tap-24g11.q1c.C.cand.21 - score = 50.90; uncharacterized protein	complement(join(1140342..1140520,1140552..1140747,1140777..1140872,1140904..1141071,1141102..1141378,1141437..1141948,1142131..1142274,1142315..1142401,1142465..1142590,1142639..1142746))	Theileria annulata	3864706
TA05025	CDS	TA05025	NC_011100.1	1142860	1144183	R	note; Tap-24g11.q1c.C.cand.20 - score = 20.91; 2 probable transmembrane helices predicted for TA05025 by TMHMM2.0 at aa 133-155 and 193-215; Signal peptide predicted for TA05025 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.982 between residues 17 and 18; uncharacterized protein	complement(join(1142860..1143336,1143596..1144183))	Theileria annulata	3864707
TA05030	CDS	TA05030	NC_011100.1	1144470	1146083	R	note; Tap-24g11.q1c.C.cand.19 - score = 31.93; uncharacterized protein	complement(join(1144470..1144871,1144939..1145064,1145106..1145287,1145320..1145397,1145474..1145641,1145672..1146083))	Theileria annulata	3864708
TA05035	CDS	TA05035	NC_011100.1	1146133	1146594	R	note; Tap-24g11.q1c.C.cand.18 - score = 12.50; uncharacterized protein	complement(join(1146133..1146224,1146280..1146381,1146441..1146594))	Theileria annulata	3864709
TA05040	CDS	TA05040	NC_011100.1	1147308	1148299	R	note; Tap-24g11.q1c.C.cand.17 - score = 22.47; uncharacterized protein	complement(join(1147308..1147445,1147479..1147586,1147636..1147797,1147834..1148005,1148034..1148299))	Theileria annulata	3864710
TA05045	CDS	TA05045	NC_011100.1	1148396	1150410	R	note; Tap-24g11.q1c.C.cand.16 - score = 49.54; uncharacterized protein	complement(join(1148396..1148570,1148601..1149133,1149163..1149290,1149346..1149462,1149497..1149622,1149652..1149756,1149786..1149828,1149858..1150348,1150386..1150410))	Theileria annulata	3864711
TA05050	CDS	TA05050	NC_011100.1	1150517	1151170	D	note; Tap-24g11.q1c.cand.216 - score = 8.94; uncharacterized protein	1150517..1151170	Theileria annulata	3864732
TA05055	CDS	TA05055	NC_011100.1	1152302	1154557	D	note; Tap-24g11.q1c.cand.217 - score = 55.97; uncharacterized protein	1152302..1154557	Theileria annulata	3864733
TA05060	CDS	TA05060	NC_011100.1	1155539	1158214	R	note; Tap-24g11.q1c.C.cand.15 - score = 60.19; ribonucleoside-diphosphate reductase large chain, putative	complement(1155539..1158214)	Theileria annulata	3864734
TA05065	CDS	TA05065	NC_011100.1	1159315	1161086	R	note; Tap-24g11.q1c.C.cand.14 - score = 34.60; uncharacterized protein	complement(join(1159315..1159576,1159608..1159684,1159714..1159815,1159902..1160319,1160353..1160523,1160575..1161086))	Theileria annulata	3864735
TA05070	CDS	TA05070	NC_011100.1	1161103	1162181	R	note; Tap-24g11.q1c.C.cand.13 - score = 20.38; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05070 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.001) with cleavage site probability 0.735 between residues 23 and 24; ATP-dependent Clp protease proteolytic subunit, putative	complement(join(1161103..1161153,1161182..1161433,1161469..1161508,1161538..1161624,1161680..1161747,1161894..1162181))	Theileria annulata	3864736
TA05075	CDS	TA05075	NC_011100.1	1162342	1163084	R	note; Tap-24g11.q1c.C.cand.12 - score = 9.99; bis(5'-nucleosyl)-phosphatase	complement(join(1162342..1162432,1162525..1162649,1162710..1162823,1162896..1163084))	Theileria annulata	3864737
TA05085	CDS	TA05085	NC_011100.1	1163502	1166639	D	note; Tap-24g11.q1c.cand.218 - score = 80.90; RNA helicase, putative	join(1163502..1164744,1164795..1165970,1166005..1166075,1166107..1166166,1166212..1166229,1166277..1166639)	Theileria annulata	3864739
TA05090	CDS	TA05090	NC_011100.1	1167017	1169769	D	note; Tap-24g11.q1c.cand.219 - score = 102.24; chromosome condensation (RCC1 homologue) protein, putative	join(1167017..1167767,1167845..1168089,1168161..1168427,1168542..1168793,1168825..1168966,1169118..1169372,1169402..1169769)	Theileria annulata	3864740
TA05095	CDS	TA05095	NC_011100.1	1169851	1172978	D	note; Tap-24g11.q1c.cand.219 - score = 102.24; uncharacterized protein	join(1169851..1169990,1170020..1170110,1170141..1170212,1170242..1170385,1170432..1170734,1170821..1171032,1171082..1171155,1171193..1171459,1171522..1172978)	Theileria annulata	3864741
TA05100	CDS	TA05100	NC_011100.1	1173085	1174137	R	note; Tap-24g11.q1c.C.cand.11 - score = 19.33; 8 probable transmembrane helices predicted for TA05100 by TMHMM2.0 at aa 46-68, 78-100, 121-143, 165-184, 191-213, 228-250, 274-296 and 330-349; glucose-6-phosphate/phosphate translocator, putative	complement(1173085..1174137)	Theileria annulata	3864742
TA05105	CDS	TA05105	NC_011100.1	1175154	1176665	D	note; Tap-24g11.q1c.cand.220 - score = 25.33; uncharacterized protein	join(1175154..1175399,1175460..1175537,1175608..1175811,1175925..1176464,1176558..1176665)	Theileria annulata	3864743
TA05110	CDS	TA05110	NC_011100.1	1176923	1180408	D	note; Tap-24g11.q1c.cand.221 - score = 90.52; uncharacterized protein	1176923..1180408	Theileria annulata	3864744
TA05115	CDS	TA05115	NC_011100.1	1180771	1182490	D	note; Tap-24g11.q1c.cand.221 - score = 90.52; 1 probable transmembrane helix predicted for TA05115 by TMHMM2.0 at aa 497-519; NADH dehydrogenase, putative	join(1180771..1180967,1181038..1182490)	Theileria annulata	3864745
TA05120	CDS	TA05120	NC_011100.1	1182582	1183175	R	note; Tap-24g11.q1c.C.cand.10 - score = 13.89; ubiquitin-conjugating enzyme (E2), putative	complement(join(1182582..1182710,1182741..1182944,1183026..1183175))	Theileria annulata	3864746
TA05125	CDS	TA05125	NC_011100.1	1183767	1185580	D	note; Tap-24g11.q1c.cand.222 - score = 36.00; 11 probable transmembrane helices predicted for TA05125 by TMHMM2.0 at aa 33-55, 99-121, 125-144, 151-173, 183-205, 218-240, 300-322, 366-388, 392-414, 427-449 and 459-481; Signal anchor predicted for TA05125 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.740) with cleavage site probability 0.000 between residues -1 and 0; uncharacterized protein	join(1183767..1183905,1183946..1184068,1184099..1184350,1184441..1185051,1185169..1185444,1185476..1185580)	Theileria annulata	3864747
TA05130	CDS	TA05130	NC_011100.1	1185654	1186364	R	note; Tap-24g11.q1c.C.cand.9 - score = 16.57; uncharacterized protein	complement(join(1185654..1185915,1185947..1186134,1186163..1186258,1186290..1186364))	Theileria annulata	3864748
TA05145	CDS	TA05145	NC_011100.1	1187193	1189155	D	note; Tap-24g11.q1c.cand.223 - score = 38.75; 10 probable transmembrane helices predicted for TA05145 by TMHMM2.0 at aa 21-43, 84-106, 113-132, 142-164, 171-193, 203-225, 275-292, 332-354, 392-414 and 429-451; Signal anchor predicted for TA05145 by SignalP 2.0 HMM (Signal peptide probability 0.090, signal anchor probability 0.871) with cleavage site probability 0.027 between residues 42 and 43; uncharacterized protein	join(1187193..1187295,1187332..1187454,1187484..1187735,1187869..1188425,1188497..1188772,1188814..1189155)	Theileria annulata	3864555
TA05150	CDS	TA05150	NC_011100.1	1189692	1191179	D	note; Tap-24g11.q1c.cand.224 - score = 21.90; 7 probable transmembrane helices predicted for TA05150 by TMHMM2.0 at aa 61-83, 98-120, 141-163, 178-200, 354-372, 382-401 and 408-430; uncharacterized protein	join(1189692..1189839,1189871..1190122,1190178..1190863,1190895..1191179)	Theileria annulata	3864556
TA05155	CDS	TA05155	NC_011100.1	1192467	1194379	D	note; Tap-24g11.q1c.cand.225 - score = 27.34; 11 probable transmembrane helices predicted for TA05155 by TMHMM2.0 at aa 45-67, 132-154, 161-183, 193-215, 227-249, 312-334, 347-369, 379-398, 405-422, 432-454 and 466-488; uncharacterized protein	join(1192467..1192489,1192522..1192673,1192788..1192907,1192940..1193191,1193254..1193861,1193983..1194249,1194281..1194379)	Theileria annulata	3864557
TA05160	CDS	TA05160	NC_011100.1	1194660	1196423	D	note; Tap-24g11.q1c.cand.226 - score = 24.89; 12 probable transmembrane helices predicted for TA05160 by TMHMM2.0 at aa 70-92, 136-158, 163-180, 190-212, 219-238, 253-275, 339-361, 384-406, 413-430, 435-457, 470-492 and 507-529; uncharacterized protein	join(1194660..1195922,1196049..1196423)	Theileria annulata	3864558
TA05165	CDS	TA05165	NC_011100.1	1196695	1197773	D	note; Tap-24g11.q1c.cand.227 - score = 25.93; uncharacterized protein	join(1196695..1196822,1196957..1197773)	Theileria annulata	3864559
TA05170	CDS	TA05170	NC_011100.1	1198014	1199542	D	note; 3 probable transmembrane helices predicted for TA05170 by TMHMM2.0 at aa 96-118, 362-384 and 394-416; uncharacterized protein	join(1198014..1198608,1198664..1198983,1199126..1199191,1199223..1199376,1199406..1199542)	Theileria annulata	3864560
TA05175	CDS	TA05175	NC_011100.1	1199655	1203128	D	note; Tap-24g11.q1c.cand.229 - score = 70.31; 1 probable transmembrane helix predicted for TA05175 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA05175 by SignalP 2.0 HMM (Signal peptide probability 0.663, signal anchor probability 0.000) with cleavage site probability 0.355 between residues 22 and 23; DNA ligase 1 (precursor), putative	join(1199655..1199779,1199816..1199919,1199952..1199993,1200028..1200364,1200456..1200617,1200647..1200750,1200784..1200992,1201088..1201192,1201244..1201683,1201736..1202009,1202054..1202255,1202390..1202577,1202656..1202841,1202872..1202979,1203015..1203128)	Theileria annulata	3864561
TA05180	CDS	TA05180	NC_011100.1	1203426	1204680	R	note; Tap-24g11.q1c.C.cand.8 - score = 36.16; uncharacterized protein	complement(join(1203426..1203797,1203827..1203961,1204040..1204115,1204148..1204680))	Theileria annulata	3864562
TA05185	CDS	TA05185	NC_011100.1	1204937	1205726	R	note; Tap-24g11.q1c.C.cand.8 - score = 36.16; uncharacterized protein	complement(join(1204937..1205509,1205541..1205726))	Theileria annulata	3864563
TA05190	CDS	TA05190	NC_011100.1	1206156	1210602	D	note; Tap-24g11.q1c.cand.230 - score = 68.11; 2 probable transmembrane helices predicted for TA05190 by TMHMM2.0 at aa 287-309 and 541-563; uncharacterized protein	join(1206156..1207751,1207808..1209994,1210189..1210278,1210348..1210602)	Theileria annulata	3864564
TA05200	CDS	TA05200	NC_011100.1	1210647	1211558	R	note; Tap-24g11.q1c.C.cand.7 - score = 21.71; uncharacterized protein	complement(1210647..1211558)	Theileria annulata	3864566
TA05205	CDS	TA05205	NC_011100.1	1211728	1212302	R	note; Tap-24g11.q1c.C.cand.6 - score = 10.99; uncharacterized protein	complement(join(1211728..1212051,1212151..1212206,1212239..1212302))	Theileria annulata	3864567
TA05210	CDS	TA05210	NC_011100.1	1212527	1216391	R	note; Tap-24g11.q1c.C.cand.5 - score = 69.13; uncharacterized protein	complement(join(1212527..1213441,1213537..1216226,1216256..1216391))	Theileria annulata	3864568
TA05215	CDS	TA05215	NC_011100.1	1216686	1222033	D	1 probable transmembrane helix predicted for TA05215 by TMHMM2.0 at aa 1323-1345; uncharacterized protein	join(1216686..1216839,1216881..1217049,1217085..1217246,1217308..1217410,1217475..1217620,1217685..1217814,1217844..1217911,1218011..1218104,1218136..1218217,1218248..1218535,1218653..1219631,1219726..1219852,1219918..1220468,1220529..1220757,1220923..1221202,1221307..1221482,1221564..1221643,1221754..1222033)	Theileria annulata	3864569
TA05220	CDS	TA05220	NC_011100.1	1222049	1224973	R	note; Tap-24g11.q1c.C.cand.4 - score = 48.18; glucose-6-phosphate-1-dehydrogenase, putative	complement(join(1222049..1223240,1223322..1224045,1224155..1224667,1224766..1224973))	Theileria annulata	3864570
TA05225	CDS	TA05225	NC_011100.1	1226562	1227838	R	note; Tap-24g11.q1c.C.cand.3 - score = 19.45; uncharacterized protein	complement(join(1226562..1226795,1226867..1227432,1227572..1227639,1227741..1227838))	Theileria annulata	3864571
TA05230	CDS	TA05230	NC_011100.1	1228184	1233454	D	note; Tap-24g11.q1c.cand.233 - score = 40.21; 8 probable transmembrane helices predicted for TA05230 by TMHMM2.0 at aa 685-707, 1031-1053, 1068-1085, 1105-1124, 1134-1156, 1161-1183, 1208-1230 and 1243-1265; cleavage and polyadenylation specificty factor, subunit, putative	join(1228184..1228535,1228688..1229247,1229355..1229445,1229555..1229739,1229921..1230067,1230142..1230570,1230672..1230932,1231220..1231254,1231482..1231666,1231851..1233454)	Theileria annulata	3864572
TA05235	CDS	TA05235	NC_011100.1	1234368	1235291	D	note; Tap-24g11.q1c.cand.234 - score = 15.17; 5 probable transmembrane helices predicted for TA05235 by TMHMM2.0 at aa 24-46, 117-139, 149-171, 214-236 and 270-292; GPI-Anchor Signal predicted for TA05235 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative	join(1234368..1234617,1234660..1235291)	Theileria annulata	3864573
TA05240	CDS	TA05240	NC_011100.1	1235324	1236252	D	note; Tap-24g11.q1c.cand.235 - score = 9.55; 4 probable transmembrane helices predicted for TA05240 by TMHMM2.0 at aa 45-67, 88-110, 120-142 and 203-225; Signal peptide predicted for TA05240 by SignalP 2.0 HMM (Signal peptide probability 0.782, signal anchor probability 0.024) with cleavage site probability 0.356 between residues 15 and 16; Tpr-related protein family member, putative	join(1235324..1235916,1235952..1236252)	Theileria annulata	3864574
TA05245	CDS	TA05245	NC_011100.1	1236264	1236873	D	2 probable transmembrane helices predicted for TA05245 by TMHMM2.0 at aa 26-45 and 55-77; GPI-Anchor Signal predicted for TA05245 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative	join(1236264..1236391,1236465..1236873)	Theileria annulata	3864870
TA05250	CDS	TA05250	NC_011100.1	1236984	1240066	D	2 probable transmembrane helices predicted for TA05250 by TMHMM2.0 at aa 327-346 and 359-378; uncharacterized protein	join(1236984..1237175,1237214..1238161,1238206..1239553,1239651..1240066)	Theileria annulata	3864871
TA05255	CDS	TA05255	NC_011100.1	1240292	1240738	D	3 probable transmembrane helices predicted for TA05255 by TMHMM2.0 at aa 20-42, 88-110 and 125-147; Signal peptide predicted for TA05255 by SignalP 2.0 HMM (Signal peptide probability 0.663, signal anchor probability 0.033) with cleavage site probability 0.361 between residues 30 and 31; GPI-Anchor Signal predicted for TA05255 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative	1240292..1240738	Theileria annulata	3864872
TA17570	CDS	TA17570	NC_011100.1	1240751	1242931	D	uncharacterized protein	1240751..1242931	Theileria annulata	3864586
TA17575	CDS	TA17575	NC_011100.1	1244176	1244709	D	Signal peptide predicted for TA17575 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.001) with cleavage site probability 0.492 between residues 17 and 18; GPI-Anchor Signal predicted for TA17575 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	1244176..1244709	Theileria annulata	3864587
TA17580	CDS	TA17580	NC_011100.1	1245008	1245337	D	SfiI-subtelomeric fragment related protein family member, putative	1245008..1245337	Theileria annulata	3864588
TA17585	CDS	TA17585	NC_011100.1	1246625	1248340	R	9 probable transmembrane helices predicted for TA17585 by TMHMM2.0 at aa 20-39, 112-134, 144-166, 206-228, 340-362, 375-397, 420-442, 462-484 and 489-508; Signal anchor predicted for TA17585 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.618) with cleavage site probability 0.002 between residues 41 and 42; Theileria-specific sub-telomeric protein, putative	complement(1246625..1248340)	Theileria annulata	3864589
TA17590	CDS	TA17590	NC_011100.1	1250494	1255756	D	Contains ankyrin repeat elements and significant hit (6.5e-46)to Pfam:hitone deacetylase domain; histone deacetylase family protein, putative	join(1250494..1252024,1252169..1253071,1253168..1253305,1253337..1253744,1253835..1254022,1254052..1254285,1254362..1255756)	Theileria annulata	3864590
TA17595	CDS	TA17595	NC_011100.1	1256488	1256709	D	SfiI-subtelomeric fragment related protein family member, putative	1256488..1256709	Theileria annulata	3864591
TA17600	CDS	TA17600	NC_011100.1	1257518	1258713	D	Signal peptide predicted for TA17600 by SignalP 2.0 HMM (Signal peptide probability 0.892, signal anchor probability 0.002) with cleavage site probability 0.832 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	join(1257518..1258237,1258258..1258713)	Theileria annulata	3864592
TA17605	CDS	TA17605	NC_011100.1	1258804	1259328	D	SfiI-subtelomeric fragment related protein family member, putative	1258804..1259328	Theileria annulata	3864593
TA17610	CDS	TA17610	NC_011100.1	1260271	1260498	D	1 probable transmembrane helix predicted for TA17610 by TMHMM2.0 at aa 29-51; Signal anchor predicted for TA17610 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.834) with cleavage site probability 0.000 between residues 52 and 53; uncharacterized protein	1260271..1260498	Theileria annulata	3864594
TA17615	CDS	TA17615	NC_011100.1	1260704	1261402	D	Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA17615 by TMHMM2.0 at aa 188-210; uncharacterized protein	1260704..1261402	Theileria annulata	3865343
TA17720	CDS	TA17720	NC_011100.1	1261616	1262317	R	centrin, putative	complement(join(1261616..1261843,1261899..1262053,1262200..1262317))	Theileria annulata	3865168
TA17775	CDS	TA17775	NC_011100.1	1262407	1262646	R	uncharacterized protein	complement(1262407..1262646)	Theileria annulata	3865179
TA17780	CDS	TA17780	NC_011100.1	1263595	1267149	D	2 probable transmembrane helices predicted for TA17780 by TMHMM2.0 at aa 678-700 and 927-949; uncharacterized protein	join(1263595..1263705,1263817..1264300,1264352..1267149)	Theileria annulata	3865180
TA17885	CDS	TA17885	NC_011100.1	1267623	1270094	R	Signal peptide predicted for TA17885 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.810 between residues 16 and 17; uncharacterized protein	complement(join(1267623..1267820,1267871..1269469,1269510..1269739,1269872..1270094))	Theileria annulata	3864995
TA17940	CDS	TA17940	NC_011100.1	1270411	1270912	R	uncharacterized protein	complement(join(1270411..1270572,1270634..1270912))	Theileria annulata	3864914
TA17945	CDS	TA17945	NC_011100.1	1271088	1271673	D	Signal anchor predicted for TA17945 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.656) with cleavage site probability 0.001 between residues 21 and 22; 60S ribosomal protein l28, putative	join(1271088..1271256,1271316..1271433,1271508..1271673)	Theileria annulata	3864915
TA18050	CDS	TA18050	NC_011100.1	1271723	1272197	R	60S ribosomal protein l35a, putative	complement(join(1271723..1271993,1272115..1272197))	Theileria annulata	3864641
TA18055	CDS	TA18055	NC_011100.1	1272928	1273966	D	uncharacterized protein	join(1272928..1273182,1273328..1273966)	Theileria annulata	3864642
TA18160	CDS	TA18160	NC_011100.1	1274014	1275248	R	mostly similar to cobalamin synthesis protein from several bacterial origin; cobalamin synthesis protein, putative	complement(join(1274014..1274209,1274254..1274632,1274695..1275094,1275198..1275248))	Theileria annulata	3864722
TA18215	CDS	TA18215	NC_011100.1	1275442	1275910	R	uncharacterized protein	complement(join(1275442..1275589,1275666..1275910))	Theileria annulata	3865041
TA18270	CDS	TA18270	NC_011100.1	1276155	1278824	R	uncharacterized protein	complement(join(1276155..1276314,1276346..1276420,1276489..1276632,1276697..1276916,1277083..1277128,1277191..1277700,1277769..1278006,1278103..1278180,1278212..1278297,1278340..1278491,1278554..1278824))	Theileria annulata	3865052
TA18275	CDS	TA18275	NC_011100.1	1279552	1284240	D	uncharacterized protein	join(1279552..1280026,1280110..1283574,1283651..1284240)	Theileria annulata	3865053
TA18380	CDS	TA18380	NC_011100.1	1284393	1284959	R	uncharacterized protein	complement(1284393..1284959)	Theileria annulata	3865155
TA18385	CDS	TA18385	NC_011100.1	1285214	1286110	D	uncharacterized protein	1285214..1286110	Theileria annulata	3865156
TA18480	CDS	TA18480	NC_011100.1	1286180	1287659	R	8 probable transmembrane helices predicted for TA18480 by TMHMM2.0 at aa 89-111, 173-192, 199-216, 246-268, 281-303, 346-363, 376-398 and 402-424; cox15 homolog, putative	complement(join(1286180..1286750,1286781..1286874,1286930..1287110,1287197..1287345,1287377..1287659))	Theileria annulata	3864769
TA18485	CDS	TA18485	NC_011100.1	1287720	1289369	D	methionine aminopeptidase, putative	join(1287720..1287990,1288086..1288244,1288309..1288473,1288539..1288826,1288892..1289097,1289157..1289369)	Theileria annulata	3864770
TA18490	CDS	TA18490	NC_011100.1	1290110	1290939	D	Pfam match to MAM33 family protein; mitochondrial matrix family protein, putative	join(1290110..1290350,1290397..1290456,1290533..1290939)	Theileria annulata	3864771
TA18495	CDS	TA18495	NC_011100.1	1291163	1303270	D	Significant similarities to midasin-related proteins; uncharacterized protein	join(1291163..1291761,1291801..1294388,1294420..1294524,1294556..1296535,1296618..1302377,1302502..1302859,1302919..1303270)	Theileria annulata	3865059
TA18500	CDS	TA18500	NC_011100.1	1303918	1304360	D	Signal peptide predicted for TA18500 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.000) with cleavage site probability 0.324 between residues 15 and 16; uncharacterized protein	join(1303918..1303993,1304026..1304360)	Theileria annulata	3865060
TA18505	CDS	TA18505	NC_011100.1	1304598	1305098	D	Signal peptide predicted for TA18505 by SignalP 2.0 HMM (Signal peptide probability 0.802, signal anchor probability 0.000) with cleavage site probability 0.551 between residues 21 and 22; uncharacterized protein	join(1304598..1304694,1304773..1305098)	Theileria annulata	3865061
TA18510	CDS	TA18510	NC_011100.1	1305303	1305566	D	uncharacterized protein	1305303..1305566	Theileria annulata	3865062
TA18515	CDS	TA18515	NC_011100.1	1305858	1307902	R	Contains putative TPR repeats; significant similarities to stress-induced phosproteins from several organisms; uncharacterized protein	complement(join(1305858..1306085,1306118..1306282,1306313..1306413,1306459..1306516,1306579..1306761,1306818..1307051,1307084..1307221,1307253..1307422,1307496..1307558,1307588..1307660,1307693..1307902))	Theileria annulata	3865063
TA18520	CDS	TA18520	NC_011100.1	1308078	1309286	R	queuine trna-ribosyltransferase-related protein, putative	complement(1308078..1309286)	Theileria annulata	3865064
TA18525	CDS	TA18525	NC_011100.1	1309495	1310160	R	uncharacterized protein	complement(join(1309495..1309581,1309612..1309731,1309762..1309862,1309893..1310160))	Theileria annulata	3865065
TA18530	CDS	TA18530	NC_011100.1	1310439	1312228	D	uncharacterized protein	join(1310439..1310522,1310566..1311072,1311103..1311609,1311744..1311991,1312020..1312090,1312164..1312228)	Theileria annulata	3865066
TA18535	CDS	TA18535	NC_011100.1	1312476	1313426	D	Signal peptide predicted for TA18535 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.983 between residues 21 and 22; uncharacterized protein	1312476..1313426	Theileria annulata	3865067
TA18540	CDS	TA18540	NC_011100.1	1313640	1314569	D	Signal peptide predicted for TA18540 by SignalP 2.0 HMM (Signal peptide probability 0.763, signal anchor probability 0.004) with cleavage site probability 0.672 between residues 18 and 19; uncharacterized protein	1313640..1314569	Theileria annulata	3865068
TA18545	CDS	TA18545	NC_011100.1	1315165	1316538	D	11 probable transmembrane helices predicted for TA18545 by TMHMM2.0 at aa 15-37, 57-79, 89-111, 118-140, 150-172, 184-206, 236-258, 271-293, 308-330, 343-365 and 380-402; Signal peptide predicted for TA18545 by SignalP 2.0 HMM (Signal peptide probability 0.646, signal anchor probability 0.129) with cleavage site probability 0.400 between residues 35 and 36; integral membrane protein, putative	1315165..1316538	Theileria annulata	3865069
TA18550	CDS	TA18550	NC_011100.1	1316740	1318719	R	uncharacterized protein	complement(join(1316740..1316856,1316909..1317023,1317053..1317119,1317151..1317198,1317230..1317296,1317410..1317804,1317931..1318062,1318203..1318719))	Theileria annulata	3865070
TA18555	CDS	TA18555	NC_011100.1	1319648	1321681	D	GTP-binding protein, putative	join(1319648..1319700,1319741..1319859,1319984..1320007,1320038..1320210,1320317..1320554,1320730..1320971,1321112..1321284,1321310..1321375,1321443..1321464,1321517..1321681)	Theileria annulata	3865071
TA18560	CDS	TA18560	NC_011100.1	1321897	1322586	R	note; uncharacterized protein	complement(join(1321897..1322489,1322532..1322586))	Theileria annulata	3865072
TA18565	CDS	TA18565	NC_011100.1	1322874	1325537	D	uncharacterized protein	join(1322874..1322933,1322974..1323168,1323284..1323438,1323685..1323906,1323937..1324087,1324357..1324599,1324750..1324890,1325031..1325225,1325352..1325537)	Theileria annulata	3865073
TA18570	CDS	TA18570	NC_011100.1	1325797	1326641	D	uncharacterized protein	join(1325797..1325844,1325916..1326246,1326305..1326504,1326537..1326641)	Theileria annulata	3865074
TA18575	CDS	TA18575	NC_011100.1	1328334	1328723	D	uncharacterized protein	1328334..1328723	Theileria annulata	3865075
TA18580	CDS	TA18580	NC_011100.1	1329098	1330349	D	uncharacterized protein	join(1329098..1329268,1329369..1329522,1329658..1329745,1329881..1330034,1330119..1330349)	Theileria annulata	3865076
TA18585	CDS	TA18585	NC_011100.1	1330528	1331979	D	uncharacterized protein	1330528..1331979	Theileria annulata	3865077
TA18590	CDS	TA18590	NC_011100.1	1332236	1332908	D	uncharacterized protein	join(1332236..1332617,1332668..1332823,1332853..1332908)	Theileria annulata	3865078
TA18595	CDS	TA18595	NC_011100.1	1332944	1333739	D	2 probable transmembrane helices predicted for TA18595 by TMHMM2.0 at aa 90-112 and 211-233; uncharacterized protein	join(1332944..1333252,1333281..1333339,1333370..1333587,1333618..1333739)	Theileria annulata	3865247
TA18600	CDS	TA18600	NC_011100.1	1333940	1334428	R	Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA18600 by TMHMM2.0 at aa 80-102; uncharacterized protein	complement(1333940..1334428)	Theileria annulata	3865248
TA18605	CDS	TA18605	NC_011100.1	1334793	1336709	R	Contains 8 putative transmembrane domain; 8 probable transmembrane helices predicted for TA18605 by TMHMM2.0 at aa 17-35, 50-69, 90-112, 156-178, 223-242, 247-266, 379-401 and 406-428; uncharacterized protein	complement(join(1334793..1335212,1335359..1335419,1335547..1335636,1335727..1335874,1335956..1336709))	Theileria annulata	3865249
TA18610	CDS	TA18610	NC_011100.1	1337446	1337733	D	Contains significant homology to CSP SMART domain; cold shock protein, putative	1337446..1337733	Theileria annulata	3865250
TA18615	CDS	TA18615	NC_011100.1	1337974	1340501	D	ATP synthase alpha chain heart isoform, mitochondrial precursor, putative	join(1337974..1338141,1338302..1338474,1338634..1339142,1339403..1339540,1339688..1339879,1340044..1340501)	Theileria annulata	3865251
TA18620	CDS	TA18620	NC_011100.1	1341360	1343348	R	Significant Pfam match to sec1 family domain; Sec1 family protein, putative	complement(join(1341360..1341583,1341737..1343348))	Theileria annulata	3865252
TA18625	CDS	TA18625	NC_011100.1	1343994	1345058	R	Contains a putative signal sequence; 1 probable transmembrane helix predicted for TA18625 by TMHMM2.0 at aa 34-56; Signal anchor predicted for TA18625 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.992) with cleavage site probability 0.001 between residues 47 and 48; uncharacterized protein	complement(join(1343994..1344161,1344205..1344758,1344917..1345058))	Theileria annulata	3865253
TA18630	CDS	TA18630	NC_011100.1	1345252	1349055	R	replication factor c-related protein, putative	complement(join(1345252..1345590,1345714..1345813,1345844..1345926,1346115..1346210,1346377..1346505,1346561..1346794,1346951..1347087,1347119..1347364,1347498..1348271,1348308..1349055))	Theileria annulata	3865254
TA18635	CDS	TA18635	NC_011100.1	1349402	1350325	R	4 probable transmembrane helices predicted for TA18635 by TMHMM2.0 at aa 4-26, 82-104, 109-126 and 146-163; GPI-Anchor Signal predicted for TA18635 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(1349402..1349676,1349746..1349772,1349947..1350090,1350277..1350325))	Theileria annulata	3865255
TA18640	CDS	TA18640	NC_011100.1	1350742	1351674	D	uncharacterized protein	join(1350742..1350765,1350887..1351056,1351089..1351674)	Theileria annulata	3865256
TA18645	CDS	TA18645	NC_011100.1	1352323	1353947	D	Contains putative transmembrane domains; 2 probable transmembrane helices predicted for TA18645 by TMHMM2.0 at aa 131-153 and 160-182; uncharacterized protein	join(1352323..1352871,1352907..1353947)	Theileria annulata	3865257
TA18650	CDS	TA18650	NC_011100.1	1354205	1355760	R	1 probable transmembrane helix predicted for TA18650 by TMHMM2.0 at aa 279-301; uncharacterized protein	complement(join(1354205..1354851,1354945..1355615,1355744..1355760))	Theileria annulata	3865258
TA18655	CDS	TA18655	NC_011100.1	1356447	1358177	R	Contains 10 putative transmembrane domains; 10 probable transmembrane helices predicted for TA18655 by TMHMM2.0 at aa 20-42, 119-141, 151-173, 213-235, 264-286, 299-318, 387-409, 429-451, 461-483 and 550-572; Theileria-specific integral membrane protein, putative	complement(1356447..1358177)	Theileria annulata	3865259
TA18660	CDS	TA18660	NC_011100.1	1359467	1360822	R	Contains putative WD04 domains; uncharacterized protein	complement(join(1359467..1359697,1359747..1359843,1359901..1360238,1360389..1360456,1360490..1360587,1360635..1360822))	Theileria annulata	3865260
TA18665	CDS	TA18665	NC_011100.1	1360987	1362181	D	The N-terminal part is conserved with a few mammlian proteins; contains a putative transmembrane domain; 1 probable transmembrane helix predicted for TA18665 by TMHMM2.0 at aa 102-124; uncharacterized protein	join(1360987..1361074,1361223..1361312,1361483..1361567,1361603..1361715,1361771..1361879,1361899..1361989,1362032..1362181)	Theileria annulata	3865261
TA18670	CDS	TA18670	NC_011100.1	1362817	1363206	D	Conatins one putative transmembrane domain; 1 probable transmembrane helix predicted for TA18670 by TMHMM2.0 at aa 22-44; uncharacterized protein	1362817..1363206	Theileria annulata	3865262
TA18675	CDS	TA18675	NC_011100.1	1363498	1365291	R	Contains 10 putative transmembrane domains; 11 probable transmembrane helices predicted for TA18675 by TMHMM2.0 at aa 22-44, 121-143, 153-175, 215-237, 267-289, 302-321, 387-409, 429-451, 461-478, 536-555 and 559-578; Theileria-specific integral membrane protein, putative	complement(1363498..1365291)	Theileria annulata	3865263
TA18680	CDS	TA18680	NC_011100.1	1366740	1367387	R	note; uncharacterized protein	complement(1366740..1367387)	Theileria annulata	3865264
TA18685	CDS	TA18685	NC_011100.1	1367538	1368421	D	hypothetical protein, conserved; uncharacterized protein	join(1367538..1367647,1367734..1368421)	Theileria annulata	3865265
TA18690	CDS	TA18690	NC_011100.1	1368708	1373412	R	uncharacterized protein	complement(join(1368708..1368850,1369026..1369383,1369419..1369437,1369491..1370382,1370433..1370609,1370674..1371506,1371608..1373050,1373234..1373412))	Theileria annulata	3864810
TA18695	CDS	TA18695	NC_011100.1	1373712	1374108	D	ubiquitin-like protein, putative	join(1373712..1373720,1373801..1373906,1373993..1374108)	Theileria annulata	3864811
TA18700	CDS	TA18700	NC_011100.1	1374749	1375636	D	Significant hit to Pfam New1 domain; 4 probable transmembrane helices predicted for TA18700 by TMHMM2.0 at aa 17-39, 49-71, 158-180 and 200-222; Signal anchor predicted for TA18700 by SignalP 2.0 HMM (Signal peptide probability 0.062, signal anchor probability 0.937) with cleavage site probability 0.046 between residues 34 and 35; NEW1 domain containing protein isoform, putative	1374749..1375636	Theileria annulata	3864812
TA18705	CDS	TA18705	NC_011100.1	1375718	1376704	R	Contains a putative signal sequence; uncharacterized protein	complement(1375718..1376704)	Theileria annulata	3864813
TA18710	CDS	TA18710	NC_011100.1	1377177	1377583	D	Significant hit to Pfam DnaJ domain; DnaJ protein, putative	join(1377177..1377233,1377299..1377583)	Theileria annulata	3864814
TA18715	CDS	TA18715	NC_011100.1	1377731	1379635	D	2 probable transmembrane helices predicted for TA18715 by TMHMM2.0 at aa 175-197 and 326-348; uncharacterized protein	1377731..1379635	Theileria annulata	3864815
TA18720	CDS	TA18720	NC_011100.1	1379876	1381373	R	uncharacterized protein	complement(join(1379876..1380116,1380147..1380220,1380286..1380447,1380539..1380705,1380738..1380816,1380862..1380926,1381013..1381373))	Theileria annulata	3864816
TA18725	CDS	TA18725	NC_011100.1	1381576	1382563	D	ribose 5-phosphate epimerase, putative	join(1381576..1381614,1381655..1381816,1381892..1382071,1382146..1382331,1382408..1382563)	Theileria annulata	3864817
TA18730	CDS	TA18730	NC_011100.1	1382717	1383486	D	uncharacterized protein	join(1382717..1382969,1383116..1383486)	Theileria annulata	3864818
TA18735	CDS	TA18735	NC_011100.1	1383816	1386185	D	uncharacterized protein	1383816..1386185	Theileria annulata	3864819
TA18740	CDS	TA18740	NC_011100.1	1386371	1387472	R	calcyclin binding protein-like, putative	complement(join(1386371..1386421,1386504..1386587,1386621..1386665,1386695..1386741,1386821..1386887,1386927..1386999,1387037..1387092,1387175..1387219,1387260..1387345,1387424..1387472))	Theileria annulata	3864820
TA18745	CDS	TA18745	NC_011100.1	1387532	1388241	R	Signal peptide predicted for TA18745 by SignalP 2.0 HMM (Signal peptide probability 0.833, signal anchor probability 0.000) with cleavage site probability 0.337 between residues 19 and 20; nicotinate-nucleotide adenylyltransferase-like protein, putative	complement(join(1387532..1387781,1387826..1388241))	Theileria annulata	3864821
TA18750	CDS	TA18750	NC_011100.1	1389168	1389590	R	Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA18750 by TMHMM2.0 at aa 5-24; Signal peptide predicted for TA18750 by SignalP 2.0 HMM (Signal peptide probability 0.650, signal anchor probability 0.000) with cleavage site probability 0.469 between residues 19 and 20; Theileria-specific hypothetical protein, putative	complement(1389168..1389590)	Theileria annulata	3864822
TA18755	CDS	TA18755	NC_011100.1	1389799	1390749	R	Contains a putative signal sequence; Signal peptide predicted for TA18755 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.003) with cleavage site probability 0.424 between residues 20 and 21; Theileria-specific conserved protein, putative	complement(1389799..1390749)	Theileria annulata	3864823
TA18760	CDS	TA18760	NC_011100.1	1390957	1391700	R	Contains a putative signal sequence; Signal peptide predicted for TA18760 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.003) with cleavage site probability 0.423 between residues 20 and 21; Theileria-specific conserved protein, putative	complement(1390957..1391700)	Theileria annulata	3864824
TA18765	CDS	TA18765	NC_011100.1	1391881	1392618	R	Contains a putative signal sequence; Signal peptide predicted for TA18765 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.789 between residues 15 and 16; Theileria-specific conserved protein, putative	complement(1391881..1392618)	Theileria annulata	3864825
TA18770	CDS	TA18770	NC_011100.1	1392969	1393859	R	Contains a putative signal sequence; Signal peptide predicted for TA18770 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.400 between residues 16 and 17; Theileria-specific conserved protein, putative	complement(1392969..1393859)	Theileria annulata	3864826
TA18775	CDS	TA18775	NC_011100.1	1394594	1396738	D	uncharacterized protein	join(1394594..1394640,1394678..1394744,1394821..1394938,1395017..1395104,1395135..1395367,1395406..1395572,1395640..1395786,1395851..1396299,1396345..1396540,1396619..1396738)	Theileria annulata	3864827
TA18780	CDS	TA18780	NC_011100.1	1396777	1397737	R	uncharacterized protein	complement(join(1396777..1396997,1397029..1397103,1397134..1397737))	Theileria annulata	3864828
TA18785	CDS	TA18785	NC_011100.1	1398044	1398790	D	uncharacterized protein	1398044..1398790	Theileria annulata	3864829
TA18790	CDS	TA18790	NC_011100.1	1399354	1402463	R	Significant Pfam & SMART hit to DEXDc2 & HELICc2 domains; chl1 protein, putative	complement(join(1399354..1399528,1399680..1399715,1399796..1400051,1400131..1400328,1400360..1400603,1400628..1400770,1400863..1401856,1401867..1402072,1402151..1402209,1402251..1402369,1402404..1402463))	Theileria annulata	3864948
TA18795	CDS	TA18795	NC_011100.1	1402909	1405489	D	SAC3/GNAP family-related protein, putative	join(1402909..1403000,1403057..1403403,1403434..1403828,1403860..1403927,1403979..1404294,1404387..1404488,1404521..1404787,1404885..1404957,1404987..1405317,1405363..1405489)	Theileria annulata	3864949
TA18800	CDS	TA18800	NC_011100.1	1405833	1407839	R	uncharacterized protein	complement(1405833..1407839)	Theileria annulata	3864950
TA18805	CDS	TA18805	NC_011100.1	1408365	1408619	R	uncharacterized protein	complement(1408365..1408619)	Theileria annulata	3864951
TA18810	CDS	TA18810	NC_011100.1	1408968	1412591	D	uncharacterized protein	1408968..1412591	Theileria annulata	3864952
TA18815	CDS	TA18815	NC_011100.1	1412931	1413339	D	Shows strong hit to SMART & Pfam rrm domain; RNA-binding protein, putative	join(1412931..1412961,1413033..1413224,1413266..1413339)	Theileria annulata	3864953
TA18820	CDS	TA18820	NC_011100.1	1413911	1420027	D	uncharacterized protein	join(1413911..1414561,1414623..1414979,1415057..1418915,1419038..1419357,1419449..1420027)	Theileria annulata	3864954
TA18825	CDS	TA18825	NC_011100.1	1420112	1421740	D	uncharacterized protein	join(1420112..1420487,1420521..1421232,1421263..1421357,1421534..1421621,1421662..1421740)	Theileria annulata	3864955
TA18830	CDS	TA18830	NC_011100.1	1422200	1426878	D	regulator of nonsense transcripts-related protein, putative	join(1422200..1422613,1422646..1422741,1422774..1422861,1422893..1423020,1423089..1423274,1423335..1423421,1423453..1423596,1423649..1423820,1423851..1424016,1424062..1424302,1424344..1424613,1424646..1424738,1424805..1424994,1425078..1425173,1425247..1425447,1425510..1425618,1425692..1425831,1425893..1426034,1426070..1426205,1426235..1426300,1426357..1426553,1426643..1426690,1426719..1426878)	Theileria annulata	3864956
TA18835	CDS	TA18835	NC_011100.1	1427037	1428426	D	2 probable transmembrane helices predicted for TA18835 by TMHMM2.0 at aa 10-29 and 42-64; Signal anchor predicted for TA18835 by SignalP 2.0 HMM (Signal peptide probability 0.034, signal anchor probability 0.954) with cleavage site probability 0.014 between residues 30 and 31; uncharacterized protein	join(1427037..1427164,1427236..1427283,1427352..1427460,1427515..1427593,1427696..1427735,1427777..1428046,1428192..1428426)	Theileria annulata	3864957
TA18840	CDS	TA18840	NC_011100.1	1428792	1429989	D	6 probable transmembrane helices predicted for TA18840 by TMHMM2.0 at aa 79-101, 111-130, 151-173, 188-210, 222-244 and 248-270; synaptic glycoprotein sc2, putative	join(1428792..1428894,1428926..1428967,1428997..1429077,1429110..1429239,1429325..1429447,1429515..1429681,1429745..1429989)	Theileria annulata	3864958
TA18845	CDS	TA18845	NC_011100.1	1430044	1432680	R	uncharacterized protein	complement(1430044..1432680)	Theileria annulata	3864959
TA18850	CDS	TA18850	NC_011100.1	1432751	1433356	R	uncharacterized protein	complement(1432751..1433356)	Theileria annulata	3864960
TA17620	CDS	TA17620	NC_011100.1	1434127	1435683	D	uncharacterized protein	1434127..1435683	Theileria annulata	3865344
TA17625	CDS	TA17625	NC_011100.1	1435767	1438940	R	1 probable transmembrane helix predicted for TA17625 by TMHMM2.0 at aa 195-214; cullin, putative	complement(join(1435767..1436012,1436043..1436129,1436177..1436271,1436301..1436373,1436404..1436439,1436471..1436868,1436946..1437036,1437065..1437174,1437205..1437268,1437313..1437465,1437553..1437777,1437808..1437929,1438000..1438216,1438278..1438292,1438369..1438507,1438559..1438650,1438684..1438802,1438886..1438940))	Theileria annulata	3865345
TA17630	CDS	TA17630	NC_011100.1	1439464	1444498	D	uncharacterized protein	join(1439464..1440139,1440183..1440287,1440321..1444099,1444143..1444282,1444369..1444498)	Theileria annulata	3865346
TA17635	CDS	TA17635	NC_011100.1	1444509	1445321	R	7 probable transmembrane helices predicted for TA17635 by TMHMM2.0 at aa 29-48, 53-72, 130-152, 156-173, 185-207, 217-236 and 243-262; Signal anchor predicted for TA17635 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.995) with cleavage site probability 0.000 between residues 51 and 52; rer1 family protein, putative	complement(1444509..1445321)	Theileria annulata	3865347
TA17640	CDS	TA17640	NC_011100.1	1445631	1446508	R	Ras-related gtpase, putative	complement(join(1445631..1445814,1445868..1446154,1446187..1446245,1446355..1446422,1446459..1446508))	Theileria annulata	3865348
TA17645	CDS	TA17645	NC_011100.1	1446771	1453313	R	dead/deah-like helicase, putative	complement(join(1446771..1450656,1450684..1453158,1453189..1453313))	Theileria annulata	3865349
TA17650	CDS	TA17650	NC_011100.1	1454472	1465872	D	uncharacterized protein	join(1454472..1459820,1459861..1465561,1465592..1465673,1465740..1465872)	Theileria annulata	3865350
TA17655	CDS	TA17655	NC_011100.1	1466017	1466441	D	Signal peptide predicted for TA17655 by SignalP 2.0 HMM (Signal peptide probability 0.763, signal anchor probability 0.000) with cleavage site probability 0.476 between residues 18 and 19; uncharacterized protein	join(1466017..1466117,1466159..1466256,1466323..1466441)	Theileria annulata	3865351
TA17660	CDS	TA17660	NC_011100.1	1466561	1468926	R	Strong Pfam hits to pyr_redox (1.5e-14) and Rieske (3.4e-50) domains; ferrodoxin reductase-like protein, putative	complement(join(1466561..1466713,1466743..1466836,1466869..1467004,1467035..1467099,1467129..1467287,1467322..1467434,1467508..1467591,1467655..1467789,1467819..1468048,1468077..1468197,1468228..1468313,1468377..1468454,1468485..1468574,1468608..1468700,1468740..1468926))	Theileria annulata	3865352
TA17665	CDS	TA17665	NC_011100.1	1469098	1469932	D	uncharacterized protein	join(1469098..1469112,1469163..1469226,1469261..1469337,1469372..1469508,1469539..1469787,1469818..1469932)	Theileria annulata	3865353
TA17670	CDS	TA17670	NC_011100.1	1470045	1471198	R	Signal peptide predicted for TA17670 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.919 between residues 17 and 18; lytB protein, putative	complement(join(1470045..1470589,1470618..1470840,1470887..1470972,1471096..1471198))	Theileria annulata	3865354
TA17680	CDS	TA17680	NC_011100.1	1471212	1474910	R	Pfam match to UCH-1 and UCH-2 domains; ubiquitin carboxyl-terminal hydrolase, putative	complement(join(1471212..1471989,1472017..1474910))	Theileria annulata	3865355
TA17685	CDS	TA17685	NC_011100.1	1475894	1477360	D	Pfam hit to asp domain (9.6e-07); aspartyl(acid) protease, putative	join(1475894..1477035,1477067..1477120,1477154..1477281,1477311..1477360)	Theileria annulata	3865356
TA17690	CDS	TA17690	NC_011100.1	1477529	1479397	R	regulator of chromosome condensation protein, putative	complement(join(1477529..1479237,1479304..1479397))	Theileria annulata	3865357
TA17695	CDS	TA17695	NC_011100.1	1479952	1480584	R	Contains a putative signal sequence; 1 probable transmembrane helix predicted for TA17695 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA17695 by SignalP 2.0 HMM (Signal peptide probability 0.045, signal anchor probability 0.955) with cleavage site probability 0.023 between residues 34 and 35; Theileria-specific hypothetical protein, putative	complement(1479952..1480584)	Theileria annulata	3865358
TA17700	CDS	TA17700	NC_011100.1	1481139	1481754	R	Contains 4 putative transmembrane domains; 4 probable transmembrane helices predicted for TA17700 by TMHMM2.0 at aa 71-93, 98-120, 132-151 and 155-177; integral membrane protein, putative	complement(join(1481139..1481657,1481713..1481754))	Theileria annulata	3865359
TA17705	CDS	TA17705	NC_011100.1	1482682	1484775	D	Signal peptide predicted for TA17705 by SignalP 2.0 HMM (Signal peptide probability 0.972, signal anchor probability 0.000) with cleavage site probability 0.866 between residues 18 and 19; uncharacterized protein	join(1482682..1482792,1482969..1483386,1483419..1483723,1483753..1484220,1484250..1484306,1484341..1484775)	Theileria annulata	3865360
TA17710	CDS	TA17710	NC_011100.1	1485043	1486453	D	uncharacterized protein	join(1485043..1485750,1485781..1486203,1486235..1486453)	Theileria annulata	3865361
TA17715	CDS	TA17715	NC_011100.1	1486928	1487527	D	60S ribosomal protein l25, putative	join(1486928..1486949,1487012..1487117,1487161..1487406,1487443..1487527)	Theileria annulata	3865167
TA17725	CDS	TA17725	NC_011100.1	1487563	1488424	R	Pfam hit (1.4e-04) to Acetyltransferase (GNAT) family domain; contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA17725 by TMHMM2.0 at aa 5-27; Acetyltransferase (GNAT) family protein, putative	complement(join(1487563..1487766,1487797..1487894,1487924..1488271,1488328..1488424))	Theileria annulata	3865169
TA17730	CDS	TA17730	NC_011100.1	1488548	1489135	D	vacuolar ATP synthase subunit g, putative	join(1488548..1488644,1488698..1488798,1488883..1488996,1489118..1489135)	Theileria annulata	3865170
TA17735	CDS	TA17735	NC_011100.1	1489244	1491728	D	uncharacterized protein	join(1489244..1489999,1490029..1490222,1490252..1491208,1491238..1491406,1491473..1491577,1491609..1491728)	Theileria annulata	3865171
TA17740	CDS	TA17740	NC_011100.1	1491806	1492761	R	6 probable transmembrane helices predicted for TA17740 by TMHMM2.0 at aa 34-53, 75-97, 118-140, 160-182, 194-213 and 228-247; Signal anchor predicted for TA17740 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.990) with cleavage site probability 0.001 between residues 53 and 54; uncharacterized protein	complement(join(1491806..1492356,1492386..1492761))	Theileria annulata	3865172
TA17745	CDS	TA17745	NC_011100.1	1493503	1494395	D	6 probable transmembrane helices predicted for TA17745 by TMHMM2.0 at aa 21-43, 53-72, 110-132, 142-164, 207-229 and 251-273; Signal anchor predicted for TA17745 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.976) with cleavage site probability 0.000 between residues 43 and 44; uncharacterized protein	join(1493503..1493831,1493863..1494190,1494222..1494395)	Theileria annulata	3865173
TA17750	CDS	TA17750	NC_011100.1	1494905	1496909	D	Contains 3 putative rna-binding domains; RNA splicing factor, putative	join(1494905..1496536,1496610..1496909)	Theileria annulata	3865174
TA17755	CDS	TA17755	NC_011100.1	1497099	1499820	D	DNA topoisomerase iii, putative	join(1497099..1497182,1497211..1497302,1497334..1497511,1497641..1497805,1497832..1497868,1497899..1497968,1497998..1498105,1498214..1498274,1498307..1498349,1498439..1498651,1498719..1498919,1498988..1499060,1499099..1499165,1499208..1499270,1499323..1499373,1499441..1499512,1499575..1499820)	Theileria annulata	3865175
TA17760	CDS	TA17760	NC_011100.1	1499881	1502217	R	uncharacterized protein	complement(join(1499881..1500266,1500327..1500408,1500454..1500771,1500859..1500966,1501012..1501187,1501256..1501346,1501386..1501922,1501969..1502217))	Theileria annulata	3865176
TA17765	CDS	TA17765	NC_011100.1	1502337	1503288	R	uncharacterized protein	complement(join(1502337..1502559,1502666..1503288))	Theileria annulata	3865177
TA17770	CDS	TA17770	NC_011100.1	1503625	1504576	R	uncharacterized protein	complement(join(1503625..1503799,1503872..1503971,1504001..1504050,1504080..1504196,1504276..1504484,1504526..1504576))	Theileria annulata	3865178
TA17785	CDS	TA17785	NC_011100.1	1504824	1505549	R	Pfam hit (1.00e-26) to Hamp1_like domain; ham1-like protein, putative	complement(join(1504824..1505063,1505122..1505182,1505272..1505410,1505444..1505549))	Theileria annulata	3865181
TA17790	CDS	TA17790	NC_011100.1	1505712	1510970	R	Exon II is uncertain; uncharacterized protein	complement(join(1505712..1505741,1505841..1508832,1508860..1510970))	Theileria annulata	3865182
TA17795	CDS	TA17795	NC_011100.1	1511264	1512052	R	40s ribosomal protein s3a, putative	complement(1511264..1512052)	Theileria annulata	3865183
TA17800	CDS	TA17800	NC_011100.1	1512880	1513035	R	uncharacterized protein	complement(join(1512880..1512978,1513018..1513035))	Theileria annulata	3865184
TA17805	CDS	TA17805	NC_011100.1	1513206	1514631	R	elongation factor tu, putative	complement(join(1513206..1513340,1513429..1514631))	Theileria annulata	3865185
TA17810	CDS	TA17810	NC_011100.1	1514802	1516685	R	Pfam hit to protein kinase domain(6.7e-06); protein kinase, putative	complement(join(1514802..1515011,1515042..1515301,1515331..1515440,1515480..1515596,1515639..1515777,1515834..1515930,1515960..1515994,1516025..1516088,1516118..1516253,1516304..1516408,1516486..1516561,1516607..1516685))	Theileria annulata	3865186
TA17815	CDS	TA17815	NC_011100.1	1516764	1517696	R	uncharacterized protein	complement(join(1516764..1516838,1516990..1517015,1517047..1517238,1517268..1517538,1517571..1517696))	Theileria annulata	3864982
TA17820	CDS	TA17820	NC_011100.1	1518002	1518485	D	uncharacterized protein	join(1518002..1518120,1518175..1518212,1518247..1518485)	Theileria annulata	3864983
TA17825	CDS	TA17825	NC_011100.1	1518619	1520733	R	Significant SMART hit (2.2e-43) to S_TKc domain and Pfam hit (5.3e-41) to pkinase domain; serine/threonine kinase, putative	complement(join(1518619..1518688,1518736..1518818,1518913..1519046,1519077..1519248,1519276..1520733))	Theileria annulata	3864984
TA17830	CDS	TA17830	NC_011100.1	1521055	1523256	D	uncharacterized protein	join(1521055..1521154,1521259..1522542,1522601..1523256)	Theileria annulata	3864985
TA17835	CDS	TA17835	NC_011100.1	1523538	1525883	R	Significant Pfam hit (6.00e-34)to AAA family ATPase domain; AAA family ATPase, putative	complement(join(1523538..1523645,1523692..1523982,1524041..1524257,1524328..1524530,1524563..1524619,1524696..1524770,1524822..1524945,1524996..1525134,1525220..1525326,1525380..1525507,1525568..1525704,1525796..1525883))	Theileria annulata	3864986
TA17840	CDS	TA17840	NC_011100.1	1526453	1527444	D	uncharacterized protein	join(1526453..1526511,1526543..1526652,1526723..1527233,1527408..1527444)	Theileria annulata	3864987
TA17845	CDS	TA17845	NC_011100.1	1527460	1529191	R	uncharacterized protein	complement(join(1527460..1528727,1528768..1529191))	Theileria annulata	3864988
TA17850	CDS	TA17850	NC_011100.1	1529399	1531004	R	uncharacterized protein	complement(join(1529399..1529524,1529555..1529806,1529838..1529951,1530006..1530123,1530152..1530199,1530230..1530326,1530356..1530393,1530423..1530496,1530527..1530601,1530635..1530698,1530742..1530819,1530853..1531004))	Theileria annulata	3864989
TA17855	CDS	TA17855	NC_011100.1	1531044	1532869	D	Pfam hit (2.2e-22) to Met10+-like protein; Met10+-like protein, putative	join(1531044..1531087,1531209..1531397,1531430..1531510,1531542..1531621,1531655..1531756,1531785..1531971,1532010..1532061,1532091..1532146,1532177..1532232,1532264..1532320,1532382..1532869)	Theileria annulata	3864990
TA17865	CDS	TA17865	NC_011100.1	1534630	1536159	D	9 probable transmembrane helices predicted for TA17865 by TMHMM2.0 at aa 43-65, 119-141, 145-167, 174-196, 211-233, 291-313, 362-384, 405-424 and 434-456; Theileria-specific integral membrane protein, putative	1534630..1536159	Theileria annulata	3864991
TA17870	CDS	TA17870	NC_011100.1	1536299	1537358	R	protein farnesyltransferase alpha subunit, putative	complement(join(1536299..1536797,1536828..1536943,1536977..1537020,1537050..1537220,1537268..1537358))	Theileria annulata	3864992
TA17875	CDS	TA17875	NC_011100.1	1537469	1538377	R	uncharacterized protein	complement(join(1537469..1537779,1537817..1538194,1538236..1538377))	Theileria annulata	3864993
TA17880	CDS	TA17880	NC_011100.1	1538504	1540513	R	SMART match (5.53e-07) to SANT domain and Pfam match (1.56e-06) to DNA-binding domain; SWI3-like protein, putative	complement(join(1538504..1538560,1538587..1538960,1538991..1539554,1539566..1539831,1539876..1540140,1540201..1540381,1540454..1540513))	Theileria annulata	3864994
TA17890	CDS	TA17890	NC_011100.1	1540611	1542361	R	rabgdi protein, putative	complement(join(1540611..1540622,1540666..1540720,1540751..1540818,1540853..1540950,1540982..1541083,1541196..1542056,1542088..1542180,1542227..1542287,1542344..1542361))	Theileria annulata	3864996
TA17895	CDS	TA17895	NC_011100.1	1543173	1543682	D	40S ribosomal protein s19, putative	1543173..1543682	Theileria annulata	3864997
TA17900	CDS	TA17900	NC_011100.1	1543857	1544285	R	40S ribosomal protein s12, putative	complement(1543857..1544285)	Theileria annulata	3864998
TA17905	CDS	TA17905	NC_011100.1	1545062	1546162	R	eukaryotic translation initiation factor 5, putative	complement(1545062..1546162)	Theileria annulata	3864999
TA17910	CDS	TA17910	NC_011100.1	1547230	1547815	D	uncharacterized protein	join(1547230..1547418,1547450..1547815)	Theileria annulata	3865000
TA17915	CDS	TA17915	NC_011100.1	1548198	1549616	D	1 probable transmembrane helix predicted for TA17915 by TMHMM2.0 at aa 433-452; uncharacterized protein	1548198..1549616	Theileria annulata	3864909
TA17920	CDS	TA17920	NC_011100.1	1549955	1550755	D	Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA17920 by TMHMM2.0 at aa 212-234; uncharacterized protein	1549955..1550755	Theileria annulata	3864910
TA17925	CDS	TA17925	NC_011100.1	1551024	1553147	R	fad-dependent glycerol-3-phosphate dehydrogenase, putative	complement(join(1551024..1551457,1551526..1551773,1551847..1552465,1552530..1552865,1552937..1553147))	Theileria annulata	3864911
TA17930	CDS	TA17930	NC_011100.1	1553640	1554914	R	uncharacterized protein	complement(1553640..1554914)	Theileria annulata	3864912
TA17935	CDS	TA17935	NC_011100.1	1556387	1558288	D	uncharacterized protein	join(1556387..1556897,1556929..1556982,1557037..1557777,1557812..1557966,1558136..1558288)	Theileria annulata	3864913
TA17950	CDS	TA17950	NC_011100.1	1558354	1559059	D	Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA17950 by TMHMM2.0 at aa 112-134 and 144-166; uncharacterized protein	join(1558354..1558492,1558647..1559059)	Theileria annulata	3864916
TA17955	CDS	TA17955	NC_011100.1	1559349	1559747	D	3 probable transmembrane helices predicted for TA17955 by TMHMM2.0 at aa 4-26, 39-58 and 63-85; Signal peptide predicted for TA17955 by SignalP 2.0 HMM (Signal peptide probability 0.940, signal anchor probability 0.025) with cleavage site probability 0.555 between residues 21 and 22; uncharacterized protein	1559349..1559747	Theileria annulata	3864917
TA17960	CDS	TA17960	NC_011100.1	1560100	1560966	D	1 probable transmembrane helix predicted for TA17960 by TMHMM2.0 at aa 256-278; uncharacterized protein	1560100..1560966	Theileria annulata	3864918
TA17965	CDS	TA17965	NC_011100.1	1561181	1561612	D	uncharacterized protein	join(1561181..1561306,1561373..1561449,1561525..1561612)	Theileria annulata	3864919
TA17970	CDS	TA17970	NC_011100.1	1562006	1563658	R	t-complex protein beta subunit, putative	complement(1562006..1563658)	Theileria annulata	3864920
TA17975	CDS	TA17975	NC_011100.1	1564673	1566280	D	uncharacterized protein	1564673..1566280	Theileria annulata	3864921
TA17980	CDS	TA17980	NC_011100.1	1566600	1566996	D	u6 snrna-associated sm-like protein, putative	join(1566600..1566702,1566798..1566869,1566908..1566996)	Theileria annulata	3864922
TA17985	CDS	TA17985	NC_011100.1	1567165	1568133	R	zinc finger protein, putative	complement(join(1567165..1567431,1567461..1567499,1567531..1567595,1567628..1567765,1567795..1567981,1568044..1568133))	Theileria annulata	3864923
TA17990	CDS	TA17990	NC_011100.1	1568343	1570650	D	wd40-repeat protein, putative	join(1568343..1568552,1568591..1568785,1568818..1569001,1569031..1569127,1569158..1569273,1569306..1569446,1569476..1569558,1569590..1569652,1569683..1569787,1570009..1570114,1570228..1570464,1570568..1570650)	Theileria annulata	3864924
TA17995	CDS	TA17995	NC_011100.1	1570755	1571077	D	Pfam hit (1.0e-10) to zf-Tim10_DDP domain; small zinc finger protein Tim10 homologue, putative	join(1570755..1570808,1570865..1571077)	Theileria annulata	3864925
TA18000	CDS	TA18000	NC_011100.1	1571269	1574148	D	Contains a putative signal peptide; shows match (9.6e-09) to Pfam rrm domain; RNA-binding protein, putative	1571269..1574148	Theileria annulata	3864926
TA18005	CDS	TA18005	NC_011100.1	1574584	1576988	D	Shows weak similarity (9.8e-01) to Pfam abhydrolase domain; could function as a possible enzyme; some similarity to lysophospholipases from P. falciparum malaria; not enough evidence to determine the nature of this gene product; uncharacterized protein	join(1574584..1576563,1576627..1576779,1576815..1576988)	Theileria annulata	3864927
TA18010	CDS	TA18010	NC_011100.1	1577541	1579043	D	Contains 10 putative transmembrane domains; 10 probable transmembrane helices predicted for TA18010 by TMHMM2.0 at aa 38-60, 82-104, 113-135, 145-164, 171-193, 208-230, 271-293, 306-328, 341-363 and 416-438; integral membrane protein, putative	1577541..1579043	Theileria annulata	3864928
TA18015	CDS	TA18015	NC_011100.1	1579323	1581535	R	uncharacterized protein	complement(join(1579323..1579479,1579593..1579755,1579785..1580326,1580373..1581535))	Theileria annulata	3864634
TA18020	CDS	TA18020	NC_011100.1	1582048	1582945	D	uncharacterized protein	join(1582048..1582096,1582140..1582252,1582323..1582581,1582611..1582695,1582726..1582945)	Theileria annulata	3864635
TA18025	CDS	TA18025	NC_011100.1	1583104	1584090	R	eb1 protein homologue, putative	complement(join(1583104..1583474,1583517..1584090))	Theileria annulata	3864636
TA18030	CDS	TA18030	NC_011100.1	1584231	1585254	R	60S ribosomal protein l7, putative	complement(join(1584231..1584286,1584403..1584657,1584689..1585172,1585249..1585254))	Theileria annulata	3864637
TA18035	CDS	TA18035	NC_011100.1	1585813	1586662	R	40s ribosomal protein s23, putative	complement(join(1585813..1586061,1586337..1586515,1586653..1586662))	Theileria annulata	3864638
TA18040	CDS	TA18040	NC_011100.1	1587079	1591053	R	DNA-directed RNA polymerase iii, putative	complement(join(1587079..1587497,1587569..1588741,1588836..1589372,1589448..1591053))	Theileria annulata	3864639
TA18045	CDS	TA18045	NC_011100.1	1591550	1598632	D	u5 small nuclear ribonucleoprotein-specific helicase, putative	join(1591550..1591594,1591703..1591903,1591954..1597761,1597827..1598064,1598121..1598329,1598387..1598632)	Theileria annulata	3864640
TA18060	CDS	TA18060	NC_011100.1	1599066	1606340	R	11 probable transmembrane helices predicted for TA18060 by TMHMM2.0 at aa 27-49, 70-92, 102-124, 131-153, 213-235, 255-277, 302-324, 337-359, 1769-1787, 1895-1917 and 1932-1954; Signal anchor predicted for TA18060 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.996) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein	complement(1599066..1606340)	Theileria annulata	3864643
TA18065	CDS	TA18065	NC_011100.1	1607237	1607706	D	uncharacterized protein	join(1607237..1607248,1607284..1607706)	Theileria annulata	3864644
TA18070	CDS	TA18070	NC_011100.1	1608424	1613928	D	11 probable transmembrane helices predicted for TA18070 by TMHMM2.0 at aa 27-49, 70-92, 102-124, 131-153, 213-235, 255-277, 302-324, 337-359, 1097-1115, 1223-1245 and 1260-1282; Signal anchor predicted for TA18070 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.996) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein	join(1608424..1609981,1610228..1613928)	Theileria annulata	3864645
TA18075	CDS	TA18075	NC_011100.1	1614211	1621546	R	uncharacterized protein	complement(join(1614211..1615061,1615165..1615367,1615452..1621350,1621528..1621546))	Theileria annulata	3864646
TA18080	CDS	TA18080	NC_011100.1	1622365	1623633	D	Weak Pfam hit(3.2e-04) to Rhomboid family domain; contains a putative signal peptide; 4 probable transmembrane helices predicted for TA18080 by TMHMM2.0 at aa 228-250, 352-371, 375-397 and 404-421; Signal peptide predicted for TA18080 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.000) with cleavage site probability 0.382 between residues 19 and 20; GPI-Anchor Signal predicted for TA18080 by DGPI v2.04, no cleavage site predicted; putative rhomboid family protein	1622365..1623633	Theileria annulata	3864647
TA18085	CDS	TA18085	NC_011100.1	1623713	1626278	R	uncharacterized protein	complement(join(1623713..1623858,1623952..1624123,1624173..1626278))	Theileria annulata	3864648
TA18090	CDS	TA18090	NC_011100.1	1626731	1627388	D	60S ribosomal protein l15, putative	join(1626731..1626761,1626799..1627388)	Theileria annulata	3864649
TA18095	CDS	TA18095	NC_011100.1	1627610	1629312	D	Weak Pfam hit(1.3e-03) to Clathrein_adaptor complex side chain; clathrin adapter complex-related protein, putative	join(1627610..1627712,1627809..1627883,1627945..1628128,1628155..1628232,1628263..1628350,1628381..1628404,1628501..1628555,1628635..1628842,1628918..1629004,1629063..1629170,1629210..1629312)	Theileria annulata	3864650
TA18100	CDS	TA18100	NC_011100.1	1629429	1631121	D	malate:quinone oxidoreductase, putative	join(1629429..1629492,1629531..1629674,1629720..1629809,1629842..1629947,1630015..1630138,1630168..1631121)	Theileria annulata	3864651
TA18105	CDS	TA18105	NC_011100.1	1631208	1633484	R	uncharacterized protein	complement(join(1631208..1631678,1631709..1631843,1631898..1633484))	Theileria annulata	3864652
TA18110	CDS	TA18110	NC_011100.1	1633854	1634884	D	uncharacterized protein	join(1633854..1633865,1633942..1634211,1634366..1634602,1634627..1634884)	Theileria annulata	3864712
TA18115	CDS	TA18115	NC_011100.1	1635231	1636403	R	uncharacterized protein	complement(1635231..1636403)	Theileria annulata	3864713
TA18120	CDS	TA18120	NC_011100.1	1636593	1643810	R	uncharacterized protein	complement(1636593..1643810)	Theileria annulata	3864714
TA18125	CDS	TA18125	NC_011100.1	1644158	1645092	R	uncharacterized protein	complement(join(1644158..1644283,1644315..1644410,1644441..1644509,1644537..1644649,1644681..1644769,1644803..1644892,1644920..1645092))	Theileria annulata	3864715
TA18130	CDS	TA18130	NC_011100.1	1645861	1647094	D	Contains putative signal peptide; contains 6 putative transmembrane domains; Shows moderate Pfam hit (1.2e-08) to Zip transporter domain; 8 probable transmembrane helices predicted for TA18130 by TMHMM2.0 at aa 4-26, 47-69, 89-111, 178-200, 215-237, 244-266, 272-294 and 307-329; zinc-transport protein, putative	join(1645861..1646029,1646123..1646293,1646326..1646589,1646691..1647094)	Theileria annulata	3864716
TA18135	CDS	TA18135	NC_011100.1	1647174	1648008	R	nucleoside diphospahte hydrolase, putative	complement(join(1647174..1647374,1647492..1647623,1647677..1647820,1647904..1648008))	Theileria annulata	3864717
TA18140	CDS	TA18140	NC_011100.1	1656229	1658121	D	uncharacterized protein	join(1656229..1656374,1656533..1656596,1656625..1656759,1656794..1656840,1656966..1657058,1657114..1657246,1657310..1657413,1657519..1657692,1657788..1658121)	Theileria annulata	3864718
TA18145	CDS	TA18145	NC_011100.1	1658386	1659741	R	uncharacterized protein	complement(join(1658386..1658614,1658760..1658885,1658913..1658995,1659041..1659097,1659131..1659283,1659323..1659388,1659468..1659581,1659616..1659741))	Theileria annulata	3864719
TA18150	CDS	TA18150	NC_011100.1	1659892	1660238	D	1 probable transmembrane helix predicted for TA18150 by TMHMM2.0 at aa 12-34; uncharacterized protein	join(1659892..1659904,1659938..1659994,1660024..1660238)	Theileria annulata	3864720
TA18155	CDS	TA18155	NC_011100.1	1660376	1662034	R	Pfam hit (3.1e-09) to CAAX amino terminal protease family domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 7 probable transmembrane helices predicted for TA18155 by TMHMM2.0 at aa 10-32, 176-198, 213-235, 304-326, 346-365, 460-482 and 497-519; Signal peptide predicted for TA18155 by SignalP 2.0 HMM (Signal peptide probability 0.731, signal anchor probability 0.116) with cleavage site probability 0.386 between residues 26 and 27; protease, putative	complement(join(1660376..1661419,1661459..1661541,1661569..1662034))	Theileria annulata	3864721
TA18165	CDS	TA18165	NC_011100.1	1662284	1664653	D	uncharacterized protein	join(1662284..1662389,1662419..1662614,1662645..1662710,1662740..1662887,1662917..1663261,1663358..1663423,1663495..1663656,1663685..1663791,1663834..1663882,1663913..1663938,1664096..1664208,1664239..1664347,1664449..1664653)	Theileria annulata	3864723
TA18170	CDS	TA18170	NC_011100.1	1664889	1666842	D	adenylosuccinate lyase, putative	join(1664889..1665075,1665139..1665212,1665531..1665713,1665745..1665867,1665971..1666111,1666228..1666541,1666641..1666842)	Theileria annulata	3864724
TA18175	CDS	TA18175	NC_011100.1	1666956	1668017	R	ribosomal protein s9, putative	complement(join(1666956..1667044,1667087..1667250,1667335..1667390,1667483..1667584,1667651..1667839,1667871..1667954,1667985..1668017))	Theileria annulata	3864725
TA18180	CDS	TA18180	NC_011100.1	1668103	1668979	R	small GTP-binding protein Rab1, putative	complement(join(1668103..1668285,1668345..1668501,1668576..1668718,1668749..1668844,1668896..1668979))	Theileria annulata	3864726
TA18185	CDS	TA18185	NC_011100.1	1670491	1671303	D	uncharacterized protein	join(1670491..1670864,1670941..1671139,1671169..1671303)	Theileria annulata	3864727
TA18190	CDS	TA18190	NC_011100.1	1671529	1672845	R	uncharacterized protein	complement(join(1671529..1671623,1671786..1671797,1671888..1672055,1672139..1672201,1672232..1672268,1672299..1672388,1672419..1672480,1672576..1672680,1672725..1672845))	Theileria annulata	3864728
TA18195	CDS	TA18195	NC_011100.1	1673016	1673939	R	uncharacterized protein	complement(1673016..1673939)	Theileria annulata	3864729
TA18200	CDS	TA18200	NC_011100.1	1674351	1675670	D	Signal anchor predicted for TA18200 by SignalP 2.0 HMM (Signal peptide probability 0.177, signal anchor probability 0.764) with cleavage site probability 0.103 between residues 22 and 23; uncharacterized protein	join(1674351..1674530,1674572..1674645,1674707..1674772,1674802..1674846,1675215..1675302,1675449..1675670)	Theileria annulata	3864730
TA18205	CDS	TA18205	NC_011100.1	1675762	1680026	D	uncharacterized protein	join(1675762..1675772,1675800..1675981,1676069..1676238,1676394..1676640,1676672..1676772,1676803..1677003,1677035..1677085,1677155..1677209,1677251..1677545,1677575..1677683,1677714..1677883,1677917..1678004,1678035..1678106,1678138..1678218,1678253..1678301,1678381..1678427,1678460..1678498,1678540..1678734,1678765..1678855,1678892..1678986,1679017..1679100,1679130..1680026)	Theileria annulata	3864731
TA18210	CDS	TA18210	NC_011100.1	1680643	1686669	D	Contains putative signal peptide; contains 11 putative transmembrane domains; 12 probable transmembrane helices predicted for TA18210 by TMHMM2.0 at aa 25-47, 76-95, 102-124, 129-151, 216-238, 265-287, 308-330, 345-367, 549-571, 1348-1366, 1474-1496 and 1511-1533; Signal anchor predicted for TA18210 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.994) with cleavage site probability 0.000 between residues 49 and 50; integral membrane protein, putative	1680643..1686669	Theileria annulata	3865040
TA18220	CDS	TA18220	NC_011100.1	1686866	1690318	R	Significant Pfam hit (5.8e-27) to Patatin-like phospholipase domain; contains putative signal peptide; patatin-like phospholipase, putative	complement(1686866..1690318)	Theileria annulata	3865042
TA18225	CDS	TA18225	NC_011100.1	1690473	1692445	R	eukaryotic translation initiation factor 3 subunit 7, putative	complement(join(1690473..1691877,1691999..1692210,1692272..1692445))	Theileria annulata	3865043
TA18230	CDS	TA18230	NC_011100.1	1692603	1695269	R	histone deacetylase family protein, putative	complement(join(1692603..1694622,1694653..1695269))	Theileria annulata	3865044
TA18235	CDS	TA18235	NC_011100.1	1695781	1698303	R	uncharacterized protein	complement(join(1695781..1696271,1696301..1696506,1696566..1696703,1696752..1697347,1697377..1697471,1697502..1697997,1698031..1698303))	Theileria annulata	3865045
TA18240	CDS	TA18240	NC_011100.1	1698544	1703776	D	Similar to several prokaryotic ATP-dependent RNA helicases; ATP-dependent RNA helicase, putative	join(1698544..1698636,1698671..1703776)	Theileria annulata	3865046
TA18245	CDS	TA18245	NC_011100.1	1703960	1704847	R	uncharacterized protein	complement(join(1703960..1704328,1704387..1704622,1704763..1704847))	Theileria annulata	3865047
TA18250	CDS	TA18250	NC_011100.1	1704954	1705720	D	Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA18250 by TMHMM2.0 at aa 50-72 and 79-98; uncharacterized protein	join(1704954..1704999,1705034..1705098,1705138..1705281,1705314..1705397,1705447..1705492,1705554..1705720)	Theileria annulata	3865048
TA18255	CDS	TA18255	NC_011100.1	1705814	1706522	R	Moderate Pfam hit (5.7e-09) cytidine deaminase domain; cytidine and deoxycytidylate deaminase family protein, putative	complement(join(1705814..1705949,1705987..1706050,1706111..1706294,1706326..1706436,1706466..1706522))	Theileria annulata	3865049
TA18260	CDS	TA18260	NC_011100.1	1706718	1709152	R	uncharacterized protein	complement(join(1706718..1708129,1708159..1709152))	Theileria annulata	3865050
TA18265	CDS	TA18265	NC_011100.1	1709339	1710744	D	GTP-binding protein, putative	join(1709339..1709428,1709517..1709720,1709773..1709928,1709962..1710020,1710050..1710098,1710130..1710207,1710277..1710358,1710393..1710546,1710573..1710744)	Theileria annulata	3865051
TA18280	CDS	TA18280	NC_011100.1	1710917	1713350	R	uncharacterized protein	complement(join(1710917..1711896,1711973..1713350))	Theileria annulata	3865054
TA18285	CDS	TA18285	NC_011100.1	1714530	1719546	D	Shows Pfam hit (3.56e-05) to MACPF domain at the C-terminal end; the first 13 exons of the protein could be part of a separate hypothetical protein; perforin-related protein, putative	join(1714530..1714541,1714789..1714992,1715084..1715271,1715329..1715843,1716028..1716111,1716145..1716314,1716357..1716786,1716847..1717262,1717303..1717454,1717484..1717607,1717649..1717736,1717768..1717847,1717877..1717952,1718024..1718116,1718334..1718378,1718421..1718620,1718678..1718889,1718922..1719106,1719161..1719546)	Theileria annulata	3865055
TA18290	CDS	TA18290	NC_011100.1	1719639	1721072	D	4 probable transmembrane helices predicted for TA18290 by TMHMM2.0 at aa 109-131, 231-248, 311-333 and 354-373; 4-hydroxybenzoate octaprenyltransferase, putative	join(1719639..1720185,1720240..1720306,1720339..1720453,1720485..1720639,1720693..1720780,1720863..1721072)	Theileria annulata	3865056
TA18295	CDS	TA18295	NC_011100.1	1721160	1722140	D	Signal peptide predicted for TA18295 by SignalP 2.0 HMM (Signal peptide probability 0.955, signal anchor probability 0.000) with cleavage site probability 0.883 between residues 19 and 20; Theileria-specific hypothetical protein, putative	1721160..1722140	Theileria annulata	3865057
TA18300	CDS	TA18300	NC_011100.1	1722327	1722964	D	2 probable transmembrane helices predicted for TA18300 by TMHMM2.0 at aa 28-50 and 155-177; Signal anchor predicted for TA18300 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.681) with cleavage site probability 0.000 between residues 46 and 47; signal peptidase, putative	join(1722327..1722477,1722564..1722964)	Theileria annulata	3865058
TA18305	CDS	TA18305	NC_011100.1	1723042	1724600	R	uncharacterized protein	complement(join(1723042..1723160,1723190..1723393,1723431..1723763,1723830..1723913,1723944..1724073,1724104..1724133,1724281..1724385,1724419..1724478,1724544..1724600))	Theileria annulata	3865138
TA18315	CDS	TA18315	NC_011100.1	1725779	1727413	R	uncharacterized protein	complement(join(1725779..1725999,1726033..1726189,1726237..1726320,1726351..1726465,1726496..1726554,1726585..1726749,1726793..1726885,1726978..1727130,1727207..1727295,1727329..1727413))	Theileria annulata	3865139
TA18320	CDS	TA18320	NC_011100.1	1727558	1728491	R	proteasome subunit alpha type 2, putative	complement(join(1727558..1727852,1727926..1728059,1728114..1728283,1728380..1728491))	Theileria annulata	3865140
TA18325	CDS	TA18325	NC_011100.1	1728633	1729818	R	hit (7.79e-01) to MACPF domain; uncharacterized protein	complement(join(1728633..1729003,1729033..1729226,1729277..1729312,1729340..1729479,1729507..1729697,1729728..1729818))	Theileria annulata	3865141
TA18330	CDS	TA18330	NC_011100.1	1730209	1732143	D	Putative signal peptide present; Theileria-specific hypothetical protein, putative	1730209..1732143	Theileria annulata	3865142
TA18335	CDS	TA18335	NC_011100.1	1732463	1733095	R	uncharacterized protein	complement(join(1732463..1732566,1732596..1732876,1733004..1733095))	Theileria annulata	3865143
TA18340	CDS	TA18340	NC_011100.1	1733757	1734714	R	uncharacterized protein	complement(join(1733757..1733963,1734048..1734131,1734425..1734616,1734649..1734714))	Theileria annulata	3865144
TA18345	CDS	TA18345	NC_011100.1	1735762	1738711	R	uncharacterized protein	complement(join(1735762..1735896,1735929..1736131,1736253..1736330,1736477..1736557,1736715..1736781,1736935..1737022,1737054..1737183,1737464..1737778,1737809..1737864,1737897..1737952,1738035..1738564,1738594..1738711))	Theileria annulata	3865145
TA18350	CDS	TA18350	NC_011100.1	1739020	1741835	R	elongation factor g 1, mitochondrial precursor	complement(join(1739020..1739442,1739600..1739841,1740055..1740405,1740578..1741835))	Theileria annulata	3865146
TA18355	CDS	TA18355	NC_011100.1	1741992	1743674	R	uncharacterized protein	complement(join(1741992..1742281,1742492..1743037,1743269..1743674))	Theileria annulata	3865147
TA18360	CDS	TA18360	NC_011100.1	1743976	1745200	D	uncharacterized protein	join(1743976..1744255,1744335..1744484,1744718..1744840,1744913..1745038,1745070..1745200)	Theileria annulata	3865148
TA18361	CDS	TA18361	NC_011100.1	1745526	1746437	D	uncharacterized protein	1745526..1746437	Theileria annulata	3865149
TA18362	CDS	TA18362	NC_011100.1	1746553	1747834	D	tgf beta-inducible nuclear protein(TNP-1) 1, putative	join(1746553..1746623,1746717..1746836,1746941..1747046,1747078..1747146,1747176..1747233,1747343..1747421,1747528..1747670,1747701..1747834)	Theileria annulata	3865150
TA18363	CDS	TA18363	NC_011100.1	1747993	1750038	D	Signal peptide predicted for TA18363 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.000) with cleavage site probability 0.523 between residues 21 and 22; uncharacterized protein	1747993..1750038	Theileria annulata	3865151
TA18365	CDS	TA18365	NC_011100.1	1750292	1750792	D	uncharacterized protein	1750292..1750792	Theileria annulata	3865152
TA18370	CDS	TA18370	NC_011100.1	1751363	1754178	R	uncharacterized protein	complement(join(1751363..1751501,1751612..1751684,1751713..1751760,1751791..1751909,1752305..1752532,1752759..1752915,1753056..1753278,1753657..1753967,1754097..1754178))	Theileria annulata	3865153
TA18375	CDS	TA18375	NC_011100.1	1754644	1758275	D	uncharacterized protein	join(1754644..1755343,1755453..1755656,1755798..1755808,1756087..1757244,1757382..1757718,1757860..1758275)	Theileria annulata	3865154
TA18390	CDS	TA18390	NC_011100.1	1758379	1762251	D	3 probable transmembrane helices predicted for TA18390 by TMHMM2.0 at aa 1009-1031, 1090-1112 and 1116-1138; Theileria-specific hypothetical protein, putative	join(1758379..1758723,1758779..1758910,1758991..1760388,1760503..1761700,1761851..1762251)	Theileria annulata	3865157
TA18395	CDS	TA18395	NC_011100.1	1762991	1769419	D	Contains 7 possible transmembrane domains; 7 probable transmembrane helices predicted for TA18395 by TMHMM2.0 at aa 1296-1318, 1345-1367, 1377-1394, 1420-1442, 1457-1476, 1496-1518 and 1798-1817; Theileria-specific hypothetical membrane protein, putative	join(1762991..1764456,1764536..1765446,1765653..1765940,1766244..1767704,1767777..1769419)	Theileria annulata	3864753
TA18400	CDS	TA18400	NC_011100.1	1769545	1772119	R	ctd-like phosphatase, putative	complement(join(1769545..1772022,1772099..1772119))	Theileria annulata	3864754
TA18405	CDS	TA18405	NC_011100.1	1773087	1775726	D	Contains possible KOW-like repeat elements; uncharacterized protein	join(1773087..1773474,1773655..1775726)	Theileria annulata	3864755
TA18410	CDS	TA18410	NC_011100.1	1775986	1779357	D	transcription factor, putative	join(1775986..1776091,1776143..1776255,1776344..1776456,1776641..1776768,1776897..1777211,1777352..1779357)	Theileria annulata	3864756
TA18415	CDS	TA18415	NC_011100.1	1779425	1780705	R	uncharacterized protein	complement(1779425..1780705)	Theileria annulata	3864757
TA18420	CDS	TA18420	NC_011100.1	1780900	1783551	R	Contains 1 putative transmembrane domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA18420 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA18420 by SignalP 2.0 HMM (Signal peptide probability 0.786, signal anchor probability 0.112) with cleavage site probability 0.435 between residues 29 and 30; dead box RNA helicase, putative	complement(join(1780900..1781071,1781261..1781627,1781806..1782291,1782472..1782744,1782885..1783551))	Theileria annulata	3864758
TA18425	CDS	TA18425	NC_011100.1	1783899	1784537	R	uncharacterized protein	complement(join(1783899..1784120,1784172..1784303,1784385..1784537))	Theileria annulata	3864759
TA18430	CDS	TA18430	NC_011100.1	1785286	1785561	D	2 probable transmembrane helices predicted for TA18430 by TMHMM2.0 at aa 21-43 and 63-80; GPI-Anchor Signal predicted for TA18430 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	join(1785286..1785389,1785420..1785561)	Theileria annulata	3864760
TA18435	CDS	TA18435	NC_011100.1	1786610	1790465	D	Contains 3 putative transmembrane domains; 3 probable transmembrane helices predicted for TA18435 by TMHMM2.0 at aa 692-714, 946-968 and 1017-1039; uncharacterized protein	join(1786610..1788961,1789077..1790465)	Theileria annulata	3864761
TA18440	CDS	TA18440	NC_011100.1	1791099	1799639	D	3 probable transmembrane helices predicted for TA18440 by TMHMM2.0 at aa 866-888, 931-953 and 2259-2281; uncharacterized protein	join(1791099..1792214,1792528..1792640,1792854..1793173,1793211..1793755,1793791..1794379,1794414..1794577,1794717..1795737,1795764..1797214,1797295..1797515,1797554..1798783,1798942..1799168,1799398..1799441,1799523..1799639)	Theileria annulata	3864762
TA18445	CDS	TA18445	NC_011100.1	1799743	1800240	R	uncharacterized protein	complement(1799743..1800240)	Theileria annulata	3864763
TA18450	CDS	TA18450	NC_011100.1	1801009	1805797	D	Contains 12 putative transmembrane domains; Apicoplast targetting peptide predicted by the PlasmoAP tool; 12 probable transmembrane helices predicted for TA18450 by TMHMM2.0 at aa 10-29, 160-177, 182-204, 216-234, 249-268, 275-297, 338-360, 517-536, 546-568, 602-624, 653-675 and 716-738; Signal anchor predicted for TA18450 by SignalP 2.0 HMM (Signal peptide probability 0.029, signal anchor probability 0.970) with cleavage site probability 0.012 between residues 27 and 28; integral membrane protein, putative	join(1801009..1801288,1801319..1801429,1801640..1801864,1802019..1802309,1802498..1802508,1802540..1802821,1802938..1803216,1803371..1803638,1803813..1804070,1804308..1804624,1804656..1804703,1804877..1805797)	Theileria annulata	3864764
TA18455	CDS	TA18455	NC_011100.1	1805867	1806763	R	uncharacterized protein	complement(1805867..1806763)	Theileria annulata	3864765
TA18460	CDS	TA18460	NC_011100.1	1807042	1811584	R	Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA18460 by TMHMM2.0 at aa 315-337 and 358-380; uncharacterized protein	complement(join(1807042..1807173,1807439..1807827,1807858..1808224,1808389..1808488,1808634..1809125,1809254..1809378,1809666..1809843,1809940..1810175,1810209..1810278,1810356..1810459,1810765..1810944,1811054..1811145,1811238..1811314,1811436..1811584))	Theileria annulata	3864766
TA18470	CDS	TA18470	NC_011100.1	1812232	1815774	R	serine/threonine-protein kinase, putative	complement(join(1812232..1813243,1813375..1813526,1813649..1813768,1813860..1813942,1814137..1814218,1814309..1814444,1814566..1814682,1814771..1814832,1814863..1814933,1815269..1815336,1815456..1815521,1815573..1815628,1815700..1815774))	Theileria annulata	3864767
TA18475	CDS	TA18475	NC_011100.1	1816190	1817455	D	Significant Pfam hit (1.1e-31) to Histone-like transcription factor domain; Histone-like transcription factor, putative	join(1816190..1816427,1816520..1816994,1817027..1817156,1817288..>1817455)	Theileria annulata	3864768
TA17470	CDS	TA17470	NC_011100.1	1817874	1818325	D	SMART 2 transmembrane domains at aa 24-46 and 66-85; 2 probable transmembrane helices predicted for TA17470 by TMHMM2.0 at aa 25-47 and 62-84; uncharacterized protein	join(1817874..1817927,1818055..1818110,1818148..1818188,1818216..1818325)	Theileria annulata	3864578
TA17465	CDS	TA17465	NC_011100.1	1818638	1820200	D	Tap-921d01.p1c.C.cand.1 - score = 20.16; SMART pfam:Peptidase_C13 (PF01650) at aa 25-377, E()=5.20e-10; GPI anchor transamidase, putative	join(1818638..1818983,1819110..1819310,1819530..1820200)	Theileria annulata	3864577
TA17460	CDS	TA17460	NC_011100.1	1820577	1822562	D	note; Tap-921d01.p1c.C.cand.2 - score = 47.74; uncharacterized protein	join(1820577..1820773,1820889..1821272,1821303..1821373,1821404..1821462,1821492..1821560,1821590..1821771,1821802..1821886,1821916..1822303,1822342..1822562)	Theileria annulata	3864576
TA17455	CDS	TA17455	NC_011100.1	1822669	1823662	D	note; Tap-921d01.p1c.C.cand.3 - score = 20.45; uncharacterized protein	join(1822669..1823025,1823058..1823245,1823278..1823662)	Theileria annulata	3864575
TA17450	CDS	TA17450	NC_011100.1	1824293	1825882	D	note; Tap-921d01.p1c.C.cand.4 - score = 32.18; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA17450 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA17450 by SignalP 2.0 HMM (Signal peptide probability 0.640, signal anchor probability 0.323) with cleavage site probability 0.265 between residues 23 and 24; uncharacterized protein	1824293..1825882	Theileria annulata	3865323
TA17445	CDS	TA17445	NC_011100.1	1826267	1827931	R	note; Tap-921d01.p1c.cand.12 - score = 49.89; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA17445 by TMHMM2.0 at aa 7-26; Signal anchor predicted for TA17445 by SignalP 2.0 HMM (Signal peptide probability 0.238, signal anchor probability 0.762) with cleavage site probability 0.096 between residues 23 and 24; uncharacterized protein	complement(1826267..1827931)	Theileria annulata	3865322
TA17440	CDS	TA17440	NC_011100.1	1828066	1828433	R	SMART 2 transmembrane domains at aa 20-42 and 63-85; 2 probable transmembrane helices predicted for TA17440 by TMHMM2.0 at aa 20-42 and 63-85; uncharacterized protein	complement(join(1828066..1828159,1828243..1828433))	Theileria annulata	3865321
TA17435	CDS	TA17435	NC_011100.1	1828606	1829509	R	note; Tap-921d01.p1c.cand.12 - score = 49.89; uncharacterized protein	complement(join(1828606..1828724,1828757..1828981,1829012..1829158,1829189..1829254,1829287..1829509))	Theileria annulata	3865320
TA17430	CDS	TA17430	NC_011100.1	1829639	1830453	D	note; Tap-921d01.p1c.C.cand.5 - score = 17.39; uncharacterized protein	join(1829639..1829708,1829753..1829831,1829869..1830021,1830054..1830140,1830171..1830453)	Theileria annulata	3865319
TA17425	CDS	TA17425	NC_011100.1	1830502	1832268	R	7 probable transmembrane helices predicted for TA17425 by TMHMM2.0 at aa 22-44, 110-129, 134-156, 232-254, 274-296, 402-424 and 429-451; Signal anchor predicted for TA17425 by SignalP 2.0 HMM (Signal peptide probability 0.251, signal anchor probability 0.664) with cleavage site probability 0.120 between residues 42 and 43; pre-protein translocase (SEC61 homologue), putative	complement(join(1830502..1830682,1830715..1831603,1831748..1832027,1832224..1832268))	Theileria annulata	3865318
TA17420	CDS	TA17420	NC_011100.1	1832348	1833175	D	Tap-921d01.p1c.C.cand.6 - score = 18.86; SMART pfam:vATP-synth_E (PF01991) at aa 16-219, E()=2.30e-24; vacuolar ATP synthase (E subunit), putative	join(1832348..1832374,1832501..1833175)	Theileria annulata	3865317
TA17415	CDS	TA17415	NC_011100.1	1833202	1833910	R	note; Tap-921d01.p1c.cand.10 - score = 12.49; uncharacterized protein	complement(join(1833202..1833445,1833475..1833632,1833675..1833766,1833823..1833910))	Theileria annulata	3865316
TA17410	CDS	TA17410	NC_011100.1	1834110	1834670	R	SMART 3 transmembrane domains at aa 60-78, 95-117 and 144-166; 4 probable transmembrane helices predicted for TA17410 by TMHMM2.0 at aa 28-50, 60-78, 95-117 and 144-166; Signal anchor predicted for TA17410 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.994) with cleavage site probability 0.000 between residues 40 and 41; uncharacterized protein	complement(1834110..1834670)	Theileria annulata	3865315
TA17405	CDS	TA17405	NC_011100.1	1834921	1836501	R	note; Tap-921d01.p1c.cand.9 - score = 28.63; Signal peptide predicted for TA17405 by SignalP 2.0 HMM (Signal peptide probability 0.855, signal anchor probability 0.122) with cleavage site probability 0.567 between residues 29 and 30; uncharacterized protein	complement(1834921..1836501)	Theileria annulata	3865314
TA17400	CDS	TA17400	NC_011100.1	1837338	1838803	D	note; SMART pfam:polyprenyl_synt (PF00348) at aa 46-329, E()=2.30e-34; 1 probable transmembrane helix predicted for TA17400 by TMHMM2.0 at aa 132-154; farnesyl pyrophosphate synthetase, putative	join(1837338..1837506,1837536..1837761,1837890..1837961,1838011..1838228,1838258..1838343,1838373..1838471,1838503..1838726,1838743..1838803)	Theileria annulata	3865313
TA17395	CDS	TA17395	NC_011100.1	1838822	1839403	R	note; Tap-921d01.p1c.cand.8 - score = 17.56; SMART HTH_XRE (SM0530) at aa 80-135, E()=1.04e-07; multiprotein bridging factor (type 1), putative	complement(join(1838822..1838920,1838955..1839123,1839202..1839247,1839280..1839403))	Theileria annulata	3865312
TA17390	CDS	TA17390	NC_011100.1	1839666	1840618	R	note; uncharacterized protein	complement(join(1839666..1839880,1839940..1840045,1840080..1840135,1840164..1840203,1840252..1840434,1840468..1840545,1840583..1840618))	Theileria annulata	3865311
TA17385	CDS	TA17385	NC_011100.1	1840809	1841518	R	note; Tap-921d01.p1c.cand.6 - score = 16.14; adp-ribosylation factor (ARF homologue), putative	complement(join(1840809..1841186,1841280..1841389,1841431..1841518))	Theileria annulata	3865310
TA17380	CDS	TA17380	NC_011100.1	1842160	1842970	D	note; Tap-921d01.p1c.C.cand.8 - score = 18.35; SMART pfam:Ribosomal_S7 domain (PF00177) at aa 40-192, E()=1.30e-59; 40S ribosomal protein S5, putative	join(1842160..1842231,1842316..1842452,1842565..1842798,1842832..1842970)	Theileria annulata	3865309
TA17375	CDS	TA17375	NC_011100.1	1843219	1847235	R	note; Tap-921d01.p1c.cand.5 - score = 51.54; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA17375 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA17375 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.004) with cleavage site probability 0.950 between residues 20 and 21; polymorphic antigen precursor, putative	complement(1843219..1847235)	Theileria annulata	3865308
TA17370	CDS	TA17370	NC_011100.1	1847684	1852228	R	note; Tap-921d01.p1c.cand.4 - score = 52.29; SMART 10 transmembrane domains at aa 20-42, 55-77, 83-102, 107-129, 149-171, 192-210, 274-296, 972-994, 1004-1026 and 1033-1055; 10 probable transmembrane helices predicted for TA17370 by TMHMM2.0 at aa 20-42, 55-77, 83-102, 107-129, 149-171, 192-210, 274-296, 972-994, 1004-1026 and 1033-1055; uncharacterized protein	complement(1847684..1852228)	Theileria annulata	3865307
TA17365	CDS	TA17365	NC_011100.1	1854137	1858717	R	note; Tap-921d01.p1c.cand.3 - score = 54.73; SMART 6 transmembrane domains at aa 141-160, 175-197, 286-308, 323-345, 392-414 and 445-467; 2 AAA (SM0382) domains at aa 549-754, E()=6.45e-01; 1265-1443, E()=2.45e-02; pfam:ABC_membrane (PF00664) at aa 848-1136, E()=9.70e-02; 11 probable transmembrane helices predicted for TA17365 by TMHMM2.0 at aa 141-160, 175-197, 286-308, 323-345, 392-414, 445-467, 838-860, 901-923, 977-999, 1003-1025 and 1077-1099; (subtelomeric) ABC-transporter protein family member, putative	complement(1854137..1858717)	Theileria annulata	3865306
TA05590	CDS	TA05590	NC_011100.1	1860626	1865203	R	note; Tap299b01.p1c.cand.1 - score = 55.75; SMART 6 transmembrane domains at aa 140-162, 175-197, 289-311, 318-340, 397-419 and 440-462; 2 AAA (SM0382) domains at aa 549-748, E()=4.68e-01; 1264-1442, E()=5.39e-02; pfam:ABC_membrane (PF00664) at aa 840-1135, E()=3.90e-02; 12 probable transmembrane helices predicted for TA05590 by TMHMM2.0 at aa 140-162, 175-197, 289-311, 318-340, 397-419, 440-462, 579-601, 837-859, 900-922, 976-998, 1002-1021 and 1088-1107; (subtelomeric) ABC-transporter protein family member, putative	complement(1860626..1865203)	Theileria annulata	3864664
TA05585	CDS	TA05585	NC_011100.1	1866882	1869221	D	SfiI-subtelomeric fragment related protein family member, putative	1866882..1869221	Theileria annulata	3864663
TA05580	CDS	TA05580	NC_011100.1	1869491	1870594	D	note; Tap299b01.p1c.C.cand.3 - score = 38.03; Theileria-specific sub-telomeric protein, SVSP family, putative	1869491..1870594	Theileria annulata	3864662
TA05575	CDS	TA05575	NC_011100.1	1870847	1872247	D	note; Tap299b01.p1c.C.cand.3 - score = 38.03; Theileria-specific sub-telomeric protein, SVSP family	1870847..1872247	Theileria annulata	3864661
TA05570	CDS	TA05570	NC_011100.1	1872648	1874264	D	note; Tap299b01.p1c.C.cand.4 - score = 35.14; Signal peptide predicted for TA05570 by SignalP 2.0 HMM (Signal peptide probability 0.738, signal anchor probability 0.077) with cleavage site probability 0.648 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	1872648..1874264	Theileria annulata	3864660
TA05565	CDS	TA05565	NC_011100.1	1874431	1876143	D	Tap299b01.p1c.C.cand.4 - score = 35.14; Signal peptide predicted for TA05565 by SignalP 2.0 HMM (Signal peptide probability 0.830, signal anchor probability 0.000) with cleavage site probability 0.810 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	1874431..1876143	Theileria annulata	3864659
TA05560	CDS	TA05560	NC_011100.1	1876431	1877759	D	note; Tap299b01.p1c.C.cand.5 - score = 31.36; Signal anchor predicted for TA05560 by SignalP 2.0 HMM (Signal peptide probability 0.189, signal anchor probability 0.701) with cleavage site probability 0.120 between residues 24 and 25; Theileria-specific sub-telomeric protein, SVSP family, putative	1876431..1877759	Theileria annulata	3864658
TA05555	CDS	TA05555	NC_011100.1	1878017	1879282	D	note; Tap299b01.p1c.C.cand.5 - score = 31.36; Signal anchor predicted for TA05555 by SignalP 2.0 HMM (Signal peptide probability 0.189, signal anchor probability 0.701) with cleavage site probability 0.120 between residues 24 and 25; Theileria-specific sub-telomeric protein, SVSP family, putative	1878017..1879282	Theileria annulata	3864657
TA05550	CDS	TA05550	NC_011100.1	1879553	1880842	D	note; Tap299b01.p1c.C.cand.6 - score = 16.17; Signal peptide predicted for TA05550 by SignalP 2.0 HMM (Signal peptide probability 0.710, signal anchor probability 0.000) with cleavage site probability 0.642 between residues 22 and 23; Theileria-specific sub-telomeric protein, SVSP family, putative	1879553..1880842	Theileria annulata	3864656
TA05545	CDS	TA05545	NC_011100.1	1881087	1882382	D	note; Tap299b01.p1c.C.cand.7 - score = 33.48; Theileria-specific sub-telomeric protein, SVSP family, putative	1881087..1882382	Theileria annulata	3864655
TA05540	CDS	TA05540	NC_011100.1	1882537	1883940	D	note; Tap299b01.p1c.C.cand.8 - score = 11.92; Signal peptide predicted for TA05540 by SignalP 2.0 HMM (Signal peptide probability 0.893, signal anchor probability 0.000) with cleavage site probability 0.809 between residues 18 and 19; Theileria-specific sub-telomeric protein, SVSP family, putative	1882537..1883940	Theileria annulata	3864654
TA05535	CDS	TA05535	NC_011100.1	1884323	1885306	D	Tap299b01.p1c.C.cand.9 - score = 25.85; SfiI-subtelomeric fragment related protein family member, putative	1884323..1885306	Theileria annulata	3864653
TA05530	CDS	TA05530	NC_011100.1	1886184	1895141	D	Tap299b01.p1c.C.cand.10 - score = 187.97; Signal peptide predicted for TA05530 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.000) with cleavage site probability 0.910 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	1886184..1895141	Theileria annulata	3864691
TA05525	CDS	TA05525	NC_011100.1	1895206	1895538	D	Tap299b01.p1c.C.cand.11 - score = 9.90; SfiI-subtelomeric fragment related protein family member, putative	1895206..1895538	Theileria annulata	3864690
TA17105	CDS	TA17105	NC_011098.1	2532	5498	R	Signal peptide predicted for TA17105 by SignalP 2.0 HMM (Signal peptide probability 0.949, signal anchor probability 0.000) with cleavage site probability 0.746 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	complement(2532..5498)	Theileria annulata	3862933
TA17110	CDS	TA17110	NC_011098.1	6362	8755	R	Signal peptide predicted for TA17110 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.000) with cleavage site probability 0.557 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	complement(6362..8755)	Theileria annulata	3862934
TA17115	CDS	TA17115	NC_011098.1	9751	24408	R	Telomeric protein, could be part of a family of conserved proteins of variable length; Signal peptide predicted for TA17115 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.000) with cleavage site probability 0.686 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	complement(9751..24408)	Theileria annulata	3862935
TA17120	CDS	TA17120	NC_011098.1	24770	27001	R	Related to Theileria parva hypothetical 49.7 kDa protein; Signal peptide predicted for TA17120 by SignalP 2.0 HMM (Signal peptide probability 0.673, signal anchor probability 0.036) with cleavage site probability 0.639 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(24770..27001)	Theileria annulata	3862936
TA17125	CDS	TA17125	NC_011098.1	27601	28653	R	Signal peptide predicted for TA17125 by SignalP 2.0 HMM (Signal peptide probability 0.779, signal anchor probability 0.000) with cleavage site probability 0.719 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(27601..28653)	Theileria annulata	3862937
TA17130	CDS	TA17130	NC_011098.1	28916	30445	R	Signal peptide predicted for TA17130 by SignalP 2.0 HMM (Signal peptide probability 0.880, signal anchor probability 0.016) with cleavage site probability 0.813 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative	complement(28916..30445)	Theileria annulata	3862938
TA17135	CDS	TA17135	NC_011098.1	30808	31968	R	Theileria-specific sub-telomeric protein, SVSP family, putative	complement(30808..31968)	Theileria annulata	3862939
TA17140	CDS	TA17140	NC_011098.1	32357	33427	R	Theileria-specific sub-telomeric protein, SVSP family, putative	complement(32357..33427)	Theileria annulata	3862940
TA17145	CDS	TA17145	NC_011098.1	34223	36040	R	1 probable transmembrane helix predicted for TA17145 by TMHMM2.0 at aa 581-603; uncharacterized protein	complement(34223..36040)	Theileria annulata	3862587
TA17150	CDS	TA17150	NC_011098.1	37384	41967	D	11 probable transmembrane helices predicted for TA17150 by TMHMM2.0 at aa 140-162, 167-189, 202-224, 289-311, 318-340, 397-419, 838-860, 907-929, 977-999, 1003-1022 and 1077-1108; ABC transporter, putative	37384..41967	Theileria annulata	3862588
TA17160	CDS	TA17160	NC_011098.1	43937	48520	D	10 probable transmembrane helices predicted for TA17160 by TMHMM2.0 at aa 140-162, 175-197, 289-311, 318-340, 397-419, 838-860, 907-929, 960-982, 997-1019 and 1086-1108; ABC transporter, putative	43937..48520	Theileria annulata	3862589
TA17170	CDS	TA17170	NC_011098.1	50493	55076	D	10 probable transmembrane helices predicted for TA17170 by TMHMM2.0 at aa 144-166, 179-201, 289-311, 318-340, 397-419, 838-860, 901-923, 978-1000, 1005-1022 and 1086-1108; ABC transporter, putative	50493..55076	Theileria annulata	3862590
TA17175	CDS	TA17175	NC_011098.1	55368	58655	R	1 probable transmembrane helix predicted for TA17175 by TMHMM2.0 at aa 7-24; Signal anchor predicted for TA17175 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.882) with cleavage site probability 0.010 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	complement(55368..58655)	Theileria annulata	3862591
TA17180	CDS	TA17180	NC_011098.1	58998	61010	R	1 probable transmembrane helix predicted for TA17180 by TMHMM2.0 at aa 625-647; Signal peptide predicted for TA17180 by SignalP 2.0 HMM (Signal peptide probability 0.858, signal anchor probability 0.000) with cleavage site probability 0.782 between residues 20 and 21; uncharacterized protein	complement(58998..61010)	Theileria annulata	3862592
TA17185	CDS	TA17185	NC_011098.1	61484	62371	R	1 probable transmembrane helix predicted for TA17185 by TMHMM2.0 at aa 249-271; uncharacterized protein	complement(61484..62371)	Theileria annulata	3862593
TA17190	CDS	TA17190	NC_011098.1	62430	63312	R	superoxide dismutase	complement(join(62430..62554,62682..62810,62893..63078,63108..63152,63179..63269,63298..63312))	Theileria annulata	3862594
TA17195	CDS	TA17195	NC_011098.1	63554	64941	R	uncharacterized protein	complement(join(63554..63639,63669..63720,63751..63935,63966..64049,64078..64204,64272..64335,64370..64491,64602..64694,64852..64941))	Theileria annulata	3862595
TA17200	CDS	TA17200	NC_011098.1	64978	66993	D	1 probable transmembrane helix predicted for TA17200 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA17200 by SignalP 2.0 HMM (Signal peptide probability 0.782, signal anchor probability 0.213) with cleavage site probability 0.707 between residues 22 and 23; trna modification gtpase, putative	join(64978..65232,65274..65394,65455..65551,65585..65654,65762..65832,65890..66045,66081..66136,66203..66993)	Theileria annulata	3862596
TA17205	CDS	TA17205	NC_011098.1	67496	70639	R	DNA repair helicase, putative	complement(join(67496..69670,69698..70068,70157..70376,70416..70493,70586..70639))	Theileria annulata	3862597
TA17210	CDS	TA17210	NC_011098.1	71518	73245	D	Signal peptide predicted for TA17210 by SignalP 2.0 HMM (Signal peptide probability 0.721, signal anchor probability 0.069) with cleavage site probability 0.269 between residues 23 and 24; GPI-Anchor Signal predicted for TA17210 by DGPI v2.04 with cleavage site probability 0.124699995 near 557; uncharacterized protein	71518..73245	Theileria annulata	3862598
TA17215	CDS	TA17215	NC_011098.1	74866	76893	D	1 probable transmembrane helix predicted for TA17215 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA17215 by SignalP 2.0 HMM (Signal peptide probability 0.638, signal anchor probability 0.186) with cleavage site probability 0.433 between residues 25 and 26; uncharacterized protein	74866..76893	Theileria annulata	3862599
TA17220	CDS	TA17220	NC_011098.1	77324	78931	D	1 probable transmembrane helix predicted for TA17220 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA17220 by SignalP 2.0 HMM (Signal peptide probability 0.949, signal anchor probability 0.050) with cleavage site probability 0.519 between residues 22 and 23; GPI-Anchor Signal predicted for TA17220 by DGPI v2.04 with cleavage site probability 0.124699995 near 516; uncharacterized protein	77324..78931	Theileria annulata	3862600
TA17225	CDS	TA17225	NC_011098.1	79079	80773	D	26s protease regulatory subunit, putative	join(79079..79180,79283..79473,79544..79676,79783..80042,80115..80446,80527..80611,80686..80773)	Theileria annulata	3862601
TA17230	CDS	TA17230	NC_011098.1	80857	81889	D	60S ribosomal protein l7-a, putative	join(80857..80967,81006..81094,81236..81350,81432..81571,81601..81889)	Theileria annulata	3862602
TA17235	CDS	TA17235	NC_011098.1	81998	83901	R	adenylosuccinate synthetase, putative	complement(join(81998..82248,82298..82561,82640..82792,82878..83136,83199..83542,83729..83825,83863..83901))	Theileria annulata	3862603
TA17240	CDS	TA17240	NC_011098.1	84263	85431	D	2 probable transmembrane helices predicted for TA17240 by TMHMM2.0 at aa 143-162 and 166-188; zinc-finger protein, putative	join(84263..84320,84423..84540,84570..84636,84711..84821,84898..85070,85149..85239,85336..85431)	Theileria annulata	3862604
TA17245	CDS	TA17245	NC_011098.1	85612	86923	D	splicing factor, putative	join(85612..85676,85779..85909,85977..86923)	Theileria annulata	3862605
TA17250	CDS	TA17250	NC_011098.1	87485	88176	D	peroxiredoxin 1, putative	join(87485..87934,88030..88176)	Theileria annulata	3863350
TA17255	CDS	TA17255	NC_011098.1	88253	88648	R	Similar to N-terminus of nucleostemins; uncharacterized protein	complement(join(88253..88489,88560..88597,88633..88648))	Theileria annulata	3863351
TA17260	CDS	TA17260	NC_011098.1	88777	89734	R	uncharacterized protein	complement(join(88777..88842,88878..89054,89140..89269,89332..89438,89473..89570,89623..89734))	Theileria annulata	3863352
TA17265	CDS	TA17265	NC_011098.1	89771	92338	R	2 probable transmembrane helices predicted for TA17265 by TMHMM2.0 at aa 13-35 and 712-734; Signal anchor predicted for TA17265 by SignalP 2.0 HMM (Signal peptide probability 0.278, signal anchor probability 0.717) with cleavage site probability 0.170 between residues 34 and 35; uncharacterized protein	complement(join(89771..89987,90016..90156,90210..90324,90399..90570,90639..91423,91504..92338))	Theileria annulata	3863353
TA17270	CDS	TA17270	NC_011098.1	93638	94627	D	Signal peptide predicted for TA17270 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.503 between residues 17 and 18; uncharacterized protein	join(93638..93992,94028..94152,94246..94497,94532..94627)	Theileria annulata	3863354
TA17275	CDS	TA17275	NC_011098.1	94774	96116	D	uncharacterized protein	join(94774..94805,94953..95148,95182..95275,95358..95428,95564..95625,95691..95985,96018..96116)	Theileria annulata	3863355
TA17280	CDS	TA17280	NC_011098.1	96302	97265	D	cell cycle regulator protein, putative	join(96302..96430,96552..96631,96688..96785,96876..97003,97074..97141,97151..97265)	Theileria annulata	3863356
TA17285	CDS	TA17285	NC_011098.1	97790	100762	R	lysophospholipase-like protein, putative	complement(97790..100762)	Theileria annulata	3863357
TA17290	CDS	TA17290	NC_011098.1	101126	101902	R	eap30 subunit of ell complex, putative	complement(101126..101902)	Theileria annulata	3863358
TA17295	CDS	TA17295	NC_011098.1	101952	102562	R	50s ribosomal protein l16, putative	complement(join(101952..102178,102262..102562))	Theileria annulata	3863359
TA17300	CDS	TA17300	NC_011098.1	104074	105450	D	7 probable transmembrane helices predicted for TA17300 by TMHMM2.0 at aa 36-58, 145-167, 182-204, 216-238, 242-264, 284-306 and 360-382; Signal anchor predicted for TA17300 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues -1 and 0; cdp-diacylglycerol synthase, putative	104074..105450	Theileria annulata	3863360
TA17305	CDS	TA17305	NC_011098.1	105619	106360	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA17305 by TMHMM2.0 at aa 4-26; Signal peptide predicted for TA17305 by SignalP 2.0 HMM (Signal peptide probability 0.964, signal anchor probability 0.032) with cleavage site probability 0.505 between residues 18 and 19; ferredoxin, putative	join(105619..105868,105976..106086,106179..106360)	Theileria annulata	3863361
TA17310	CDS	TA17310	NC_011098.1	106409	107174	R	40s ribosomal protein s15, putative	complement(join(106409..106704,106786..106912,107145..107174))	Theileria annulata	3863362
TA17315	CDS	TA17315	NC_011098.1	107488	108552	D	3 probable transmembrane helices predicted for TA17315 by TMHMM2.0 at aa 204-226, 247-269 and 274-296; Signal peptide predicted for TA17315 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.944 between residues 19 and 20; surface protein precursor (TaSP), putative	join(107488..107992,108049..108149,108214..108552)	Theileria annulata	3863363
TA17320	CDS	TA17320	NC_011098.1	108731	109196	D	uncharacterized protein	join(108731..108938,108976..109196)	Theileria annulata	3863364
TA17325	CDS	TA17325	NC_011098.1	109767	110369	D	4 probable transmembrane helices predicted for TA17325 by TMHMM2.0 at aa 25-44, 57-79, 94-116 and 137-159; Signal anchor predicted for TA17325 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.790) with cleavage site probability 0.000 between residues 39 and 40; integral membrane protein, putative	109767..110369	Theileria annulata	3863365
TA17330	CDS	TA17330	NC_011098.1	110490	112292	R	uncharacterized protein	complement(110490..112292)	Theileria annulata	3863366
TA17335	CDS	TA17335	NC_011098.1	112480	113733	R	uncharacterized protein	complement(join(112480..112679,112712..112920,112958..113733))	Theileria annulata	3863367
TA17340	CDS	TA17340	NC_011098.1	114031	114593	D	Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA17340 by TMHMM2.0 at aa 20-42 and 63-85; Signal anchor predicted for TA17340 by SignalP 2.0 HMM (Signal peptide probability 0.013, signal anchor probability 0.860) with cleavage site probability 0.008 between residues 41 and 42; uncharacterized protein	join(114031..114186,114266..114325,114531..114593)	Theileria annulata	3863368
TA17345	CDS	TA17345	NC_011098.1	114883	117857	D	cell division control protein, putative	join(114883..115238,115322..116213,116291..116615,116648..117367,117400..117857)	Theileria annulata	3863369
TA07025	CDS	TA07025	NC_011098.1	120669	122045	R	Tap349h10.p1c.C.cand.237 - score = 15.26; 9 probable transmembrane helices predicted for TA07025 by TMHMM2.0 at aa 18-40, 95-114, 124-143, 150-172, 187-209, 235-257, 308-327, 348-370 and 380-402; Tpr-related protein family member, putative	complement(120669..122045)	Theileria annulata	3862606
TA07030	CDS	TA07030	NC_011098.1	122519	123969	R	Tap349h10.p1c.C.cand.236 - score = 18.45; uncharacterized protein	complement(join(122519..122887,123046..123175,123261..123380,123433..123547,123603..123681,123773..123904,123952..123969))	Theileria annulata	3862607
TA07035	CDS	TA07035	NC_011098.1	124925	125432	R	Tap349h10.p1c.C.cand.235 - score = 11.60; uncharacterized protein	complement(join(124925..125085,125191..125284,125325..125432))	Theileria annulata	3862608
TA07040	CDS	TA07040	NC_011098.1	125779	126592	D	Tap349h10.p1c.cand.1 - score = 17.58; uncharacterized protein	join(125779..126075,126132..126290,126423..126483,126519..126592)	Theileria annulata	3862609
TA07045	CDS	TA07045	NC_011098.1	126735	127337	R	Tap349h10.p1c.C.cand.234 - score = 14.57; uncharacterized protein	complement(126735..127337)	Theileria annulata	3862610
TA07050	CDS	TA07050	NC_011098.1	127636	129250	D	Tap349h10.p1c.cand.2 - score = 20.19; methionine aminopeptidase 1, putative	join(127636..127691,127725..127899,127982..128154,128187..128228,128353..128695,128883..128908,128946..129070,129183..129250)	Theileria annulata	3862611
TA07055	CDS	TA07055	NC_011098.1	129394	130865	D	uncharacterized protein	join(129394..130716,130746..130865)	Theileria annulata	3862612
TA07060	CDS	TA07060	NC_011098.1	131196	132692	R	Tap349h10.p1c.C.cand.233 - score = 26.28; uncharacterized protein	complement(join(131196..131869,131939..132692))	Theileria annulata	3862613
TA07065	CDS	TA07065	NC_011098.1	133212	135421	D	Tap349h10.p1c.cand.4 - score = 48.41; chaperonin (HSP60), putative	join(133212..133656,133688..133875,133928..134261,134344..134648,134759..134842,134946..135198,135279..135421)	Theileria annulata	3862614
TA07070	CDS	TA07070	NC_011098.1	135774	137216	D	Tap349h10.p1c.cand.5 - score = 11.41; 6 probable transmembrane helices predicted for TA07070 by TMHMM2.0 at aa 21-43, 63-82, 189-211, 296-318, 325-347 and 362-384; Signal anchor predicted for TA07070 by SignalP 2.0 HMM (Signal peptide probability 0.037, signal anchor probability 0.957) with cleavage site probability 0.019 between residues 42 and 43; uncharacterized protein	join(135774..135918,136014..136328,136387..137216)	Theileria annulata	3862615
TA07125	CDS	TA07125	NC_011098.1	137284	140559	D	Tap349h10.p1c.cand.6 - score = 32.26; uncharacterized protein	join(137284..137546,137624..137708,137968..138031,138063..138169,138200..138313,138426..138502,138573..138604,138639..138733,138979..139245,139340..139477,139508..139766,139958..140559)	Theileria annulata	3862664
TA07230	CDS	TA07230	NC_011098.1	141035	141972	R	Tap349h10.p1c.C.cand.232 - score = 10.97; 1 probable transmembrane helix predicted for TA07230 by TMHMM2.0 at aa 181-203; Signal peptide predicted for TA07230 by SignalP 2.0 HMM (Signal peptide probability 0.643, signal anchor probability 0.000) with cleavage site probability 0.548 between residues 17 and 18; uncharacterized protein	complement(join(141035..141321,141503..141715,141804..141972))	Theileria annulata	3862522
TA07285	CDS	TA07285	NC_011098.1	142146	143337	R	Tap349h10.p1c.C.cand.231 - score = 14.82; uncharacterized protein	complement(join(142146..142357,142446..142536,142933..143022,143056..143337))	Theileria annulata	3862729
TA07290	CDS	TA07290	NC_011098.1	144703	145074	D	Tap349h10.p1c.cand.7 - score = 10.26; histone H2B (variant 1), putative	144703..145074	Theileria annulata	3862730
TA07395	CDS	TA07395	NC_011098.1	145182	148154	R	Tap349h10.p1c.C.cand.230 - score = 52.36; uncharacterized protein	complement(145182..148154)	Theileria annulata	3863086
TA07450	CDS	TA07450	NC_011098.1	148489	149559	R	Tap349h10.p1c.C.cand.229 - score = 23.79; uncharacterized protein	complement(148489..149559)	Theileria annulata	3862743
TA07505	CDS	TA07505	NC_011098.1	149699	152097	R	Signal peptide predicted for TA07505 by SignalP 2.0 HMM (Signal peptide probability 0.974, signal anchor probability 0.000) with cleavage site probability 0.755 between residues 16 and 17; rDNA dimethyladenosine transferase, putative	complement(join(149699..150604,150806..150888,151003..151140,151201..151305,151337..151397,151581..151681,151735..151996,152044..152097))	Theileria annulata	3862754
TA07560	CDS	TA07560	NC_011098.1	152122	154613	R	Tap349h10.p1c.C.cand.226 - score = 45.91; uncharacterized protein	complement(join(152122..154349,154425..154457,154514..154613))	Theileria annulata	3862765
TA07565	CDS	TA07565	NC_011098.1	155425	155735	D	Tap349h10.p1c.cand.8 - score = 7.93; 1 probable transmembrane helix predicted for TA07565 by TMHMM2.0 at aa 20-42; Signal anchor predicted for TA07565 by SignalP 2.0 HMM (Signal peptide probability 0.008, signal anchor probability 0.984) with cleavage site probability 0.003 between residues 38 and 39; GPI-Anchor Signal predicted for TA07565 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	join(155425..155491,155560..155735)	Theileria annulata	3862766
TA07670	CDS	TA07670	NC_011098.1	156643	160017	R	Tap349h10.p1c.C.cand.225 - score = 25.48; uncharacterized protein	complement(join(156643..156823,157181..158304,158610..158845,159083..159769,159915..160017))	Theileria annulata	3862573
TA07725	CDS	TA07725	NC_011098.1	160478	160985	R	Tap349h10.p1c.C.cand.224 - score = 10.18; uncharacterized protein	complement(join(160478..160641,160734..160896,160974..160985))	Theileria annulata	3862584
TA07780	CDS	TA07780	NC_011098.1	161059	164745	R	Tap349h10.p1c.C.cand.223 - score = 72.65; uncharacterized protein	complement(161059..164745)	Theileria annulata	3862790
TA07785	CDS	TA07785	NC_011098.1	165158	168658	D	Tap349h10.p1c.cand.10 - score = 56.76; 7 probable transmembrane helices predicted for TA07785 by TMHMM2.0 at aa 36-58, 78-100, 136-158, 173-195, 197-219, 293-315 and 353-375; uncharacterized protein	165158..168658	Theileria annulata	3862791
TA07890	CDS	TA07890	NC_011098.1	168755	170029	R	Tap349h10.p1c.C.cand.222 - score = 20.93; uncharacterized protein	complement(168755..170029)	Theileria annulata	3862952
TA07895	CDS	TA07895	NC_011098.1	170118	171251	D	Tap349h10.p1c.cand.11 - score = 27.05; uncharacterized protein	170118..171251	Theileria annulata	3862953
TA08000	CDS	TA08000	NC_011098.1	171335	172336	R	uncharacterized protein	complement(171335..172336)	Theileria annulata	3862974
TA08055	CDS	TA08055	NC_011098.1	173289	177675	R	Tap349h10.p1c.C.cand.220 - score = 58.63; DEAD-box family (SNF2-like) helicase, putative	complement(join(173289..175462,175609..176536,176694..176881,177378..177570,177661..177675))	Theileria annulata	3862985
TA08060	CDS	TA08060	NC_011098.1	178352	181827	D	Tap349h10.p1c.cand.12 - score = 7.25; T-complex protein 1 (TCP1) chaperonin, putative	join(178352..178555,178751..179018,179482..180129,180449..180731,181096..181211,181324..181485,181643..181827)	Theileria annulata	3862986
TA08165	CDS	TA08165	NC_011098.1	182018	183653	R	Tap349h10.p1c.C.cand.218 - score = 11.16; uncharacterized protein	complement(join(182018..182313,182603..182812,183127..183202,183235..183306,183409..183494,183587..183653))	Theileria annulata	3863007
TA08220	CDS	TA08220	NC_011098.1	185116	185349	R	uncharacterized protein	complement(185116..185349)	Theileria annulata	3863018
TA08275	CDS	TA08275	NC_011098.1	186288	186935	R	Tap349h10.p1c.C.cand.217 - score = 12.72; uncharacterized protein	complement(join(186288..186638,186733..186782,186812..186935))	Theileria annulata	3863029
TA08280	CDS	TA08280	NC_011098.1	187093	187884	D	Tap349h10.p1c.cand.14 - score = 10.88; 2 probable transmembrane helices predicted for TA08280 by TMHMM2.0 at aa 33-55 and 93-115; uncharacterized protein	join(187093..187164,187197..187289,187432..187480,187733..187884)	Theileria annulata	3863030
TA08335	CDS	TA08335	NC_011098.1	188755	191536	D	Tap349h10.p1c.cand.14 - score = 10.88; tubulin alpha chain, putative	join(188755..188816,188963..189080,189652..189859,190091..190403,190748..190978,191170..191536)	Theileria annulata	3863042
TA08390	CDS	TA08390	NC_011098.1	192067	192525	D	Tap349h10.p1c.cand.15 - score = 8.85; 60S ribosomal protein L32, putative	join(192067..192153,192214..192525)	Theileria annulata	3863053
TA08495	CDS	TA08495	NC_011098.1	192884	194401	R	Tap349h10.p1c.C.cand.214 - score = 15.54; uncharacterized protein	complement(join(192884..193213,193346..194401))	Theileria annulata	3863074
TA08550	CDS	TA08550	NC_011098.1	194463	199320	R	Tap349h10.p1c.C.cand.214 - score = 15.54; adapter protein, putative	complement(join(194463..194918,195106..196639,197155..197679,197832..198043,198649..198791,198915..199038,199143..199214,199249..199320))	Theileria annulata	3863123
TA08555	CDS	TA08555	NC_011098.1	199412	201175	D	uncharacterized protein	join(199412..199484,199605..199708,199830..199942,199974..200043,200180..200259,200660..200735,200769..200805,201084..201175)	Theileria annulata	3863124
TA08609	CDS	TA08609	NC_011098.1	201320	201996	R	1 probable transmembrane helix predicted for TA08609 by TMHMM2.0 at aa 9-31; Signal anchor predicted for TA08609 by SignalP 2.0 HMM (Signal peptide probability 0.174, signal anchor probability 0.632) with cleavage site probability 0.067 between residues 33 and 34; signal peptidase, putative	complement(join(201320..201670,201826..201996))	Theileria annulata	3863154
TA08610	CDS	TA08610	NC_011098.1	202138	202836	D	prefoldin subunit, putative	join(202138..202312,202655..202836)	Theileria annulata	3863155
TA08715	CDS	TA08715	NC_011098.1	203314	204032	R	Tap349h10.p1c.C.cand.213 - score = 10.03; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA08715 by SignalP 2.0 HMM (Signal peptide probability 0.927, signal anchor probability 0.070) with cleavage site probability 0.455 between residues 27 and 28; bacterial histone-like protein, putative	complement(join(203314..203637,203844..204032))	Theileria annulata	3863176
TA08720	CDS	TA08720	NC_011098.1	204849	205016	D	Tap349h10.p1c.cand.17 - score = 6.84; uncharacterized protein	204849..205016	Theileria annulata	3863177
TA08825	CDS	TA08825	NC_011098.1	206829	207255	R	uncharacterized protein	complement(join(206829..207055,207096..207255))	Theileria annulata	3863198
TA08830	CDS	TA08830	NC_011098.1	207393	207737	D	1 probable transmembrane helix predicted for TA08830 by TMHMM2.0 at aa 89-111; uncharacterized protein	207393..207737	Theileria annulata	3863199
TA08885	CDS	TA08885	NC_011098.1	208437	209748	D	Tap349h10.p1c.cand.18 - score = 16.44; uncharacterized protein	join(208437..208617,208856..209748)	Theileria annulata	3863209
TA08940	CDS	TA08940	NC_011098.1	210469	211047	D	Tap349h10.p1c.cand.19 - score = 11.47; uncharacterized protein	join(210469..210495,210559..211047)	Theileria annulata	3863142
TA08995	CDS	TA08995	NC_011098.1	211722	212879	D	Tap349h10.p1c.cand.20 - score = 19.78; uncharacterized protein	join(211722..211879,212015..212258,212337..212879)	Theileria annulata	3863153
TA09050	CDS	TA09050	NC_011098.1	213514	214101	D	Tap349h10.p1c.cand.21 - score = 12.50; Signal peptide predicted for TA09050 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.978 between residues 17 and 18; uncharacterized protein	213514..214101	Theileria annulata	3863223
TA09140	CDS	TA09140	NC_011098.1	214504	215571	R	Tap349h10.p1c.C.cand.211 - score = 19.47; 1 probable transmembrane helix predicted for TA09140 by TMHMM2.0 at aa 7-28; Signal peptide predicted for TA09140 by SignalP 2.0 HMM (Signal peptide probability 0.958, signal anchor probability 0.042) with cleavage site probability 0.798 between residues 24 and 25; SfiI-subtelomeric fragment related protein family member, putative	complement(214504..215571)	Theileria annulata	3863240
TA09145	CDS	TA09145	NC_011098.1	216090	217526	R	uncharacterized protein	complement(join(216090..216551,216957..217526))	Theileria annulata	3863241
TA09150	CDS	TA09150	NC_011098.1	217608	218604	D	Tap349h10.p1c.cand.22 - score = 10.54; uncharacterized protein	join(217608..217697,217728..217856,217947..218024,218350..218604)	Theileria annulata	3863242
TA09155	CDS	TA09155	NC_011098.1	220111	223196	R	6 probable transmembrane helices predicted for TA09155 by TMHMM2.0 at aa 27-49, 514-536, 549-571, 586-608, 637-659 and 674-696; Signal anchor predicted for TA09155 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.987) with cleavage site probability 0.000 between residues -1 and 0; uncharacterized protein	complement(join(220111..220466,220950..221645,222011..223196))	Theileria annulata	3863243
TA09160	CDS	TA09160	NC_011098.1	223311	223887	R	1 probable transmembrane helix predicted for TA09160 by TMHMM2.0 at aa 84-106; uncharacterized protein	complement(join(223311..223466,223600..223636,223742..223887))	Theileria annulata	3863244
TA09165	CDS	TA09165	NC_011098.1	223963	225570	R	Tap349h10.p1c.C.cand.209 - score = 45.88; serine/threonine protein kinase, putative	complement(join(223963..224432,224649..224914,225155..225570))	Theileria annulata	3863245
TA09170	CDS	TA09170	NC_011098.1	226198	228009	R	uncharacterized protein	complement(226198..228009)	Theileria annulata	3863246
TA09175	CDS	TA09175	NC_011098.1	228145	228627	R	uncharacterized protein	complement(join(228145..228156,228290..228453,228552..228627))	Theileria annulata	3863247
TA09180	CDS	TA09180	NC_011098.1	229650	230403	D	Tap349h10.p1c.cand.23 - score = 11.91; 60S ribosomal L1/L10a protein, putative	join(229650..229711,229896..230403)	Theileria annulata	3863248
TA09185	CDS	TA09185	NC_011098.1	230621	233061	D	Tap349h10.p1c.cand.24 - score = 33.99; structure-specific recognition protein (SSRP) 1, putative	join(230621..230683,230805..230919,230985..231103,231141..231464,231846..232068,232100..232240,232292..232386,232438..232529,232559..232691,232802..232940,233033..233061)	Theileria annulata	3863249
TA09190	CDS	TA09190	NC_011098.1	233208	234781	D	leucine carboxylmethyl transferase, putative	join(233208..233281,233313..233398,233437..233714,233784..233848,233879..233942,234063..234110,234153..234214,234337..234427,234479..234781)	Theileria annulata	3863250
TA09195	CDS	TA09195	NC_011098.1	234926	236392	D	leucine carboxyl methyltransferase, putative	join(234926..234999,235029..235114,235146..235423,235527..235591,235621..235684,235805..235852,235880..235941,235972..236392)	Theileria annulata	3863251
TA09200	CDS	TA09200	NC_011098.1	236767	238181	D	Tap349h10.p1c.cand.26 - score = 34.60; leucine carboxyl methyltransferase, putative	join(236767..236828,236862..236947,236978..237249,237408..237536,237567..237626,237657..237704,237737..237798,237828..237921,237951..238181)	Theileria annulata	3863252
TA09205	CDS	TA09205	NC_011098.1	238393	239903	D	Tap349h10.p1c.cand.27 - score = 28.22; 3 probable transmembrane helices predicted for TA09205 by TMHMM2.0 at aa 47-69, 247-269 and 308-330; leucine carboxyl methyltransferase, putative	join(238393..238457,238493..238886,238952..239295,239327..239371,239402..239463,239494..239603,239643..239903)	Theileria annulata	3863253
TA09210	CDS	TA09210	NC_011098.1	239945	241551	R	Tap349h10.p1c.C.cand.207 - score = 35.78; Pumilio-family RNA-binding protein, putative	complement(join(239945..240627,240701..240946,240978..241116,241148..241182,241214..241323,241364..241551))	Theileria annulata	3863254
TA09215	CDS	TA09215	NC_011098.1	241708	243365	D	Tap349h10.p1c.cand.28 - score = 28.53; 2 probable transmembrane helices predicted for TA09215 by TMHMM2.0 at aa 117-136 and 141-163; uncharacterized protein	join(241708..241865,242026..242054,242111..242618,242650..242871,242903..243028,243059..243365)	Theileria annulata	3863255
TA09220	CDS	TA09220	NC_011098.1	243398	245143	R	Tap349h10.p1c.C.cand.206 - score = 31.62; serine/threonine kinase, putative	complement(join(243398..243520,243602..243891,243923..244379,244455..244944,245019..245143))	Theileria annulata	3863256
TA09225	CDS	TA09225	NC_011098.1	245224	251265	R	Tap349h10.p1c.C.cand.205 - score = 122.95; uncharacterized protein	complement(245224..251265)	Theileria annulata	3863257
TA09230	CDS	TA09230	NC_011098.1	251662	254425	R	Tap349h10.p1c.C.cand.204 - score = 62.40; glucose-inhibited division protein a-like protein, putative	complement(join(251662..251809,251882..252370,252402..252527,252576..252663,252695..252802,252849..253011,253044..253157,253193..253274,253310..253472,253502..253611,253641..254082,254221..254425))	Theileria annulata	3863258
TA09235	CDS	TA09235	NC_011098.1	254631	254954	R	Tap349h10.p1c.C.cand.203 - score = 8.78; translation initiation factor (SUI1 homologue), putative	complement(254631..254954)	Theileria annulata	3863259
TA09240	CDS	TA09240	NC_011098.1	255914	256656	D	Tap349h10.p1c.cand.30 - score = 18.60; endosome sorting protein (SNF7 homologue), putative	join(255914..255976,256049..256135,256175..256401,256494..256656)	Theileria annulata	3863260
TA09245	CDS	TA09245	NC_011098.1	256834	257307	R	Tap349h10.p1c.C.cand.202 - score = 9.04; 1 probable transmembrane helix predicted for TA09245 by TMHMM2.0 at aa 137-156; uncharacterized protein	complement(256834..257307)	Theileria annulata	3863261
TA09250	CDS	TA09250	NC_011098.1	257769	258899	D	Tap349h10.p1c.cand.31 - score = 24.06; uncharacterized protein	257769..258899	Theileria annulata	3863262
TA09255	CDS	TA09255	NC_011098.1	259285	259926	R	Tap349h10.p1c.C.cand.201 - score = 12.51; 1 probable transmembrane helix predicted for TA09255 by TMHMM2.0 at aa 172-194; Signal peptide predicted for TA09255 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.800 between residues 17 and 18; uncharacterized protein	complement(259285..259926)	Theileria annulata	3863263
TA09260	CDS	TA09260	NC_011098.1	260095	260790	R	Tap349h10.p1c.C.cand.200 - score = 19.49; uncharacterized protein	complement(260095..260790)	Theileria annulata	3863264
TA09265	CDS	TA09265	NC_011098.1	260874	262300	R	Tap349h10.p1c.C.cand.199 - score = 19.62; Signal peptide predicted for TA09265 by SignalP 2.0 HMM (Signal peptide probability 0.914, signal anchor probability 0.002) with cleavage site probability 0.307 between residues 24 and 25; Tpr-related protein family member, putative	complement(join(260874..262181,262259..262300))	Theileria annulata	3863265
TA09270	CDS	TA09270	NC_011098.1	262524	263849	D	There is overlap with TA09275 gene at the 3' end; uncharacterized protein	262524..263849	Theileria annulata	3863266
TA09275	CDS	TA09275	NC_011098.1	263789	264979	R	There is overlap with TA09270 gene at the 3' end; SfiI-subtelomeric fragment related protein family member, putative	complement(263789..264979)	Theileria annulata	3863267
TA09280	CDS	TA09280	NC_011098.1	265065	266660	R	Tap349h10.p1c.C.cand.197 - score = 36.04; uncharacterized protein	complement(265065..266660)	Theileria annulata	3863268
TA09285	CDS	TA09285	NC_011098.1	266715	267610	R	Tap349h10.p1c.C.cand.196 - score = 18.55; 1 probable transmembrane helix predicted for TA09285 by TMHMM2.0 at aa 175-194; Tpr-related protein family member, putative	complement(join(266715..267060,267212..267359,267394..267610))	Theileria annulata	3863269
TA09290	CDS	TA09290	NC_011098.1	267767	268879	D	Tap349h10.p1c.cand.35 - score = 25.35; uncharacterized protein	267767..268879	Theileria annulata	3863270
TA09295	CDS	TA09295	NC_011098.1	268882	271732	R	Tap349h10.p1c.C.cand.195 - score = 51.65; exonuclease 1, putative	complement(join(268882..270074,270105..270371,270401..270605,270761..271484,271515..271732))	Theileria annulata	3863271
TA09300	CDS	TA09300	NC_011098.1	271886	273546	D	Tap349h10.p1c.cand.36 - score = 33.88; uncharacterized protein	join(271886..271936,271969..272235,272269..272987,273019..273155,273188..273546)	Theileria annulata	3863272
TA09305	CDS	TA09305	NC_011098.1	273771	275418	R	U5 snRNP-specific subunit, putative	complement(join(273771..273859,273924..274245,274866..275080,275115..275418))	Theileria annulata	3863273
TA09310	CDS	TA09310	NC_011098.1	275547	278268	R	26S proteasome ATPase subunit, putative	complement(join(275547..275737,275850..276170,276688..276840,277377..277475,277507..277962,278142..278268))	Theileria annulata	3863274
TA09315	CDS	TA09315	NC_011098.1	279206	292942	D	Tap349h10.p1c.cand.37 - score = 188.68; uncharacterized protein	279206..292942	Theileria annulata	3863275
TA09320	CDS	TA09320	NC_011098.1	294336	295657	R	Tap349h10.p1c.C.cand.190 - score = 25.65; 3 probable transmembrane helices predicted for TA09320 by TMHMM2.0 at aa 221-240, 253-271 and 276-295; Signal peptide predicted for TA09320 by SignalP 2.0 HMM (Signal peptide probability 0.946, signal anchor probability 0.000) with cleavage site probability 0.686 between residues 13 and 14; uncharacterized protein	complement(join(294336..294703,294871..295017,295052..295108,295191..295218,295253..295657))	Theileria annulata	3863276
TA09325	CDS	TA09325	NC_011098.1	295998	297857	D	Tap349h10.p1c.cand.38 - score = 25.09; uncharacterized protein	295998..297857	Theileria annulata	3863277
TA09330	CDS	TA09330	NC_011098.1	298311	300791	D	Tap349h10.p1c.cand.39 - score = 41.75; 6 probable transmembrane helices predicted for TA09330 by TMHMM2.0 at aa 21-40, 50-68, 81-103, 118-140, 175-197 and 747-769; Signal anchor predicted for TA09330 by SignalP 2.0 HMM (Signal peptide probability 0.021, signal anchor probability 0.863) with cleavage site probability 0.007 between residues 38 and 39; uncharacterized protein	join(298311..300274,300419..300791)	Theileria annulata	3863278
TA09335	CDS	TA09335	NC_011098.1	301392	303409	D	Tap349h10.p1c.cand.40 - score = 24.15; 3 probable transmembrane helices predicted for TA09335 by TMHMM2.0 at aa 151-173, 206-228 and 248-270; uncharacterized protein	join(301392..302130,302318..302471,302696..302802,302834..302973,303110..303409)	Theileria annulata	3863279
TA09340	CDS	TA09340	NC_011098.1	303427	306036	R	Tap349h10.p1c.C.cand.189 - score = 42.71; uncharacterized protein	complement(303427..306036)	Theileria annulata	3863280
TA09345	CDS	TA09345	NC_011098.1	306761	307876	R	Tap349h10.p1c.C.cand.188 - score = 15.12; GNAT-family N-acetyltransferase, putative	complement(join(306761..306842,306879..306978,307172..307258,307490..307587,307698..307876))	Theileria annulata	3863281
TA09350	CDS	TA09350	NC_011098.1	308003	308523	R	Tap349h10.p1c.C.cand.188 - score = 15.12; 40S ribosomal protein S20, putative	complement(join(308003..308151,308223..308336,308424..308523))	Theileria annulata	3863282
TA09355	CDS	TA09355	NC_011098.1	309153	310207	D	uncharacterized protein	join(309153..309287,309719..310207)	Theileria annulata	3863283
TA09360	CDS	TA09360	NC_011098.1	311387	313234	D	Tap349h10.p1c.cand.41 - score = 43.12; uncharacterized protein	311387..313234	Theileria annulata	3863284
TA09365	CDS	TA09365	NC_011098.1	313974	314570	D	Tap349h10.p1c.cand.42 - score = 15.82; Signal peptide predicted for TA09365 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.962 between residues 17 and 18; uncharacterized protein	313974..314570	Theileria annulata	3863285
TA09370	CDS	TA09370	NC_011098.1	314960	317254	R	Tap349h10.p1c.C.cand.187 - score = 31.09; uncharacterized protein	complement(314960..317254)	Theileria annulata	3863286
TA09375	CDS	TA09375	NC_011098.1	317755	322943	R	Tap349h10.p1c.C.cand.186 - score = 53.81; U5 snRNP subunit, putative	complement(join(317755..317922,318185..318263,318404..318628,318861..318944,318978..318993,319325..321034,321416..322943))	Theileria annulata	3863287
TA09380	CDS	TA09380	NC_011098.1	323222	324285	D	Tap349h10.p1c.cand.43 - score = 8.87; 3 probable transmembrane helices predicted for TA09380 by TMHMM2.0 at aa 7-24, 57-79 and 230-252; uncharacterized protein	join(323222..323375,323404..323559,323834..324285)	Theileria annulata	3863288
TA09385	CDS	TA09385	NC_011098.1	324406	326428	D	uncharacterized protein	join(324406..324477,324688..324744,324779..324827,324920..325009,325177..325337,325533..325624,325774..325880,326024..326101,326304..326428)	Theileria annulata	3863289
TA09390	CDS	TA09390	NC_011098.1	326898	327862	D	CLP protease, putative	join(326898..327050,327098..327557,327660..327862)	Theileria annulata	3863290
TA09395	CDS	TA09395	NC_011098.1	328339	329309	R	Tap349h10.p1c.C.cand.185 - score = 9.77; small heat-shock (HSP) protein, putative	complement(join(328339..328622,328923..329160,329226..329309))	Theileria annulata	3863291
TA07075	CDS	TA07075	NC_011098.1	329937	332002	D	Tap349h10.p1c.cand.45 - score = 12.61; 1 probable transmembrane helix predicted for TA07075 by TMHMM2.0 at aa 141-163; meiotic recombination (DMC1-like) protein, putative	join(329937..330020,330055..330147,330180..330454,330527..330690,330959..331083,331332..331665,331848..332002)	Theileria annulata	3862654
TA07080	CDS	TA07080	NC_011098.1	332842	333277	R	uncharacterized protein	complement(join(332842..333023,333115..333208,333239..333277))	Theileria annulata	3862655
TA07085	CDS	TA07085	NC_011098.1	334064	334372	R	Tap349h10.p1c.C.cand.183 - score = 8.83; 1 probable transmembrane helix predicted for TA07085 by TMHMM2.0 at aa 12-34; Signal anchor predicted for TA07085 by SignalP 2.0 HMM (Signal peptide probability 0.090, signal anchor probability 0.900) with cleavage site probability 0.051 between residues 25 and 26; uncharacterized protein	complement(334064..334372)	Theileria annulata	3862656
TA07090	CDS	TA07090	NC_011098.1	335307	338450	R	uncharacterized protein	complement(join(335307..335452,335481..335766,336123..336667,336749..336913,336953..337004,337027..337220,337257..337361,337451..338450))	Theileria annulata	3862657
TA07095	CDS	TA07095	NC_011098.1	338952	345274	D	Signal peptide predicted for TA07095 by SignalP 2.0 HMM (Signal peptide probability 0.932, signal anchor probability 0.000) with cleavage site probability 0.890 between residues 15 and 16; ClpB protein, putative	join(338952..339269,339798..340220,340516..340680,340902..341175,341500..341768,342077..342210,342280..342443,342702..342799,342839..343144,343415..343496,343565..343963,344097..344321,344473..344799,345006..345274)	Theileria annulata	3862658
TA07100	CDS	TA07100	NC_011098.1	345834	347111	R	Tap349h10.p1c.C.cand.179 - score = 77.85; uncharacterized protein	complement(345834..347111)	Theileria annulata	3862659
TA07105	CDS	TA07105	NC_011098.1	347501	350209	R	Tap349h10.p1c.C.cand.179 - score = 77.85; uncharacterized protein	complement(347501..350209)	Theileria annulata	3862660
TA07110	CDS	TA07110	NC_011098.1	351994	352452	R	Tap349h10.p1c.C.cand.178 - score = 12.78; uncharacterized protein	complement(join(351994..352190,352245..352326,352357..352452))	Theileria annulata	3862661
TA07115	CDS	TA07115	NC_011098.1	352802	353416	D	Tap349h10.p1c.cand.49 - score = 9.28; 40S ribosomal S12-related protein, putative	352802..353416	Theileria annulata	3862662
TA07120	CDS	TA07120	NC_011098.1	354355	355935	D	Tap349h10.p1c.cand.50 - score = 10.45; 11 probable transmembrane helices predicted for TA07120 by TMHMM2.0 at aa 31-48, 72-94, 101-123, 138-160, 173-195, 215-237, 271-293, 298-320, 350-372, 385-407 and 439-461; transporter, putative	join(354355..355219,355385..355935)	Theileria annulata	3862663
TA07130	CDS	TA07130	NC_011098.1	356318	356911	R	Tap349h10.p1c.C.cand.177 - score = 14.24; Signal peptide predicted for TA07130 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.974 between residues 17 and 18; uncharacterized protein	complement(356318..356911)	Theileria annulata	3862665
TA07135	CDS	TA07135	NC_011098.1	357490	358585	R	Tap349h10.p1c.C.cand.176 - score = 37.20; RAN binding protein 1, putative	complement(join(357490..357912,357944..358585))	Theileria annulata	3862666
TA07140	CDS	TA07140	NC_011098.1	360166	365267	R	splicing factor 3b subunit, putative	complement(join(360166..361043,361527..362474,362682..364547,364937..365267))	Theileria annulata	3862667
TA07145	CDS	TA07145	NC_011098.1	365769	370153	D	Tap349h10.p1c.cand.51 - score = 11.10; 2 probable transmembrane helices predicted for TA07145 by TMHMM2.0 at aa 6-28 and 386-408; Signal peptide predicted for TA07145 by SignalP 2.0 HMM (Signal peptide probability 0.726, signal anchor probability 0.252) with cleavage site probability 0.428 between residues 21 and 22; uncharacterized protein	join(365769..365907,366409..366524,366593..366908,367138..367624,368064..368225,368236..368569,368631..368715,368838..368961,369511..369774,369934..370153)	Theileria annulata	3862668
TA07146	CDS	TA07146	NC_011098.1	371066	373798	R	uncharacterized protein	complement(join(371066..373194,373489..373798))	Theileria annulata	3862669
TA07150	CDS	TA07150	NC_011098.1	374854	380148	R	RNA-binding protein, putative	complement(374854..380148)	Theileria annulata	3862670
TA07155	CDS	TA07155	NC_011098.1	380219	380980	R	Tap349h10.p1c.C.cand.171 - score = 21.21; uncharacterized protein	complement(380219..380980)	Theileria annulata	3862671
TA07160	CDS	TA07160	NC_011098.1	381139	382396	D	Tap349h10.p1c.cand.52 - score = 35.26; CTP-phosphoethanolamine cytidylyltransferase, putative	join(381139..381544,381616..382130,382160..382396)	Theileria annulata	3862672
TA07162	CDS	TA07162	NC_011098.1	383759	384425	D	Existence of Exon I not sure, possible pseudogene; uncharacterized protein	join(383759..383783,383809..384425)	Theileria annulata	3862508
TA07165	CDS	TA07165	NC_011098.1	385188	385871	D	Tap349h10.p1c.cand.53 - score = 17.20; uncharacterized protein	385188..385871	Theileria annulata	3862509
TA07170	CDS	TA07170	NC_011098.1	386502	387627	D	filament assembling protein, putative	join(386502..386730,386760..387007,387037..387240,387271..387627)	Theileria annulata	3862510
TA07175	CDS	TA07175	NC_011098.1	387695	388881	D	gene model may need to be refined (small overlap with TA07180 at the 3' end); uncharacterized protein	join(387695..387740,387776..387892,387928..388062,388106..388881)	Theileria annulata	3862511
TA07180	CDS	TA07180	NC_011098.1	388871	389764	R	gene model may need to be refined (small overlap with TA07175 at the 3' end); nucleosome/chromatin assembly factor, putative	complement(join(388871..389062,389096..389143,389174..389764))	Theileria annulata	3862512
TA07185	CDS	TA07185	NC_011098.1	389904	392201	R	Tap349h10.p1c.C.cand.170 - score = 66.29; uncharacterized protein	complement(join(389904..390976,391011..391110,391168..391264,391318..391396,391426..391578,391610..391663,391694..392201))	Theileria annulata	3862513
TA07190	CDS	TA07190	NC_011098.1	392641	393637	D	Tap349h10.p1c.cand.57 - score = 25.39; uncharacterized protein	join(392641..392798,392839..392948,392984..393210,393240..393301,393391..393454,393485..393637)	Theileria annulata	3862514
TA07195	CDS	TA07195	NC_011098.1	393723	394466	D	Tap349h10.p1c.cand.58 - score = 11.08; uncharacterized protein	393723..394466	Theileria annulata	3862515
TA07200	CDS	TA07200	NC_011098.1	394701	395502	R	Tap349h10.p1c.C.cand.169 - score = 17.49; 7 probable transmembrane helices predicted for TA07200 by TMHMM2.0 at aa 21-43, 53-75, 87-106, 116-138, 145-164, 169-191 and 204-226; Signal anchor predicted for TA07200 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.889) with cleavage site probability 0.000 between residues 43 and 44; uncharacterized protein	complement(join(394701..395065,395095..395202,395232..395502))	Theileria annulata	3862516
TA07205	CDS	TA07205	NC_011098.1	396644	397390	R	4 probable transmembrane helices predicted for TA07205 by TMHMM2.0 at aa 53-75, 107-126, 133-155 and 160-182; Signal anchor predicted for TA07205 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.631) with cleavage site probability 0.002 between residues 43 and 44; GPI-Anchor Signal predicted for TA07205 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(396644..396994,397088..397390))	Theileria annulata	3862517
TA07210	CDS	TA07210	NC_011098.1	397726	398472	R	Tap349h10.p1c.C.cand.168 - score = 13.75; 7 probable transmembrane helices predicted for TA07210 by TMHMM2.0 at aa 15-34, 41-63, 78-100, 107-129, 139-156, 161-183 and 198-215; Signal anchor predicted for TA07210 by SignalP 2.0 HMM (Signal peptide probability 0.117, signal anchor probability 0.624) with cleavage site probability 0.039 between residues 36 and 37; GPI-Anchor Signal predicted for TA07210 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(397726..398036,398067..398177,398226..398472))	Theileria annulata	3862518
TA07215	CDS	TA07215	NC_011098.1	398727	400584	R	Tap349h10.p1c.C.cand.167 - score = 35.09; uncharacterized protein	complement(join(398727..398849,398894..399105,399231..400584))	Theileria annulata	3862519
TA07220	CDS	TA07220	NC_011098.1	400862	402736	D	Tap349h10.p1c.cand.59 - score = 39.05; uncharacterized protein	400862..402736	Theileria annulata	3862520
TA07225	CDS	TA07225	NC_011098.1	402806	405022	R	Tap349h10.p1c.C.cand.166 - score = 36.07; uncharacterized protein	complement(join(402806..403185,403249..404339,404396..404705,404740..405022))	Theileria annulata	3862521
TA07235	CDS	TA07235	NC_011098.1	405222	405812	R	Tap349h10.p1c.C.cand.165 - score = 19.34; uncharacterized protein	complement(405222..405812)	Theileria annulata	3862523
TA07240	CDS	TA07240	NC_011098.1	406961	412659	R	Tap349h10.p1c.C.cand.164 - score = 119.42; uncharacterized protein	complement(join(406961..407821,407862..407926,407996..408241,408310..408400,408432..408785,408843..408953,408985..409044,409077..409765,409840..409983,410018..410335,410367..410612,410653..410948,410992..411569,411628..411711,411759..411922,411957..412028,412060..412238,412270..412507,412569..412659))	Theileria annulata	3862524
TA07245	CDS	TA07245	NC_011098.1	413274	414645	D	Tap349h10.p1c.cand.60 - score = 33.31; uncharacterized protein	join(413274..413379,413412..413544,413582..413960,413998..414118,414142..414224,414256..414645)	Theileria annulata	3862525
TA07250	CDS	TA07250	NC_011098.1	415313	420064	D	Tap349h10.p1c.cand.61 - score = 85.24; uncharacterized protein	join(415313..419039,419103..419343,419406..419850,419909..420064)	Theileria annulata	3862526
TA07255	CDS	TA07255	NC_011098.1	420215	422777	R	Tap349h10.p1c.C.cand.163 - score = 66.69; gamma adaptin, putative	complement(join(420215..421839,421901..422777))	Theileria annulata	3862723
TA07260	CDS	TA07260	NC_011098.1	423278	427264	D	Tap349h10.p1c.cand.62 - score = 71.17; uncharacterized protein	423278..427264	Theileria annulata	3862724
TA07265	CDS	TA07265	NC_011098.1	427396	428661	R	Tap349h10.p1c.C.cand.162 - score = 19.37; uncharacterized protein	complement(join(427396..427547,427600..427698,427757..427868,427901..427953,428022..428147,428221..428373,428442..428537,428616..428661))	Theileria annulata	3862725
TA07270	CDS	TA07270	NC_011098.1	429141	433234	D	Tap349h10.p1c.cand.63 - score = 74.25; 16 probable transmembrane helices predicted for TA07270 by TMHMM2.0 at aa 10-32, 53-75, 85-107, 137-159, 174-196, 235-257, 277-299, 312-334, 349-371, 376-398, 402-421, 426-448, 923-945, 952-974, 1021-1043 and 1145-1164; Signal peptide predicted for TA07270 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.036) with cleavage site probability 0.687 between residues 21 and 22; proton translocating inorganic pyrophosphatase, putative	join(429141..429260,429489..432535,432704..432788,432820..432907,432960..433234)	Theileria annulata	3862726
TA07275	CDS	TA07275	NC_011098.1	433435	433885	R	Tap349h10.p1c.C.cand.161 - score = 10.26; 1 probable transmembrane helix predicted for TA07275 by TMHMM2.0 at aa 25-47; thioredoxin, putative	complement(join(433435..433754,433858..433885))	Theileria annulata	3862727
TA07280	CDS	TA07280	NC_011098.1	435174	438254	D	Tap349h10.p1c.cand.64 - score = 52.99; importin beta/transportin, putative	join(435174..436077,436196..437563,437647..438254)	Theileria annulata	3862728
TA07295	CDS	TA07295	NC_011098.1	438406	440695	R	Tap349h10.p1c.C.cand.160 - score = 41.55; acetyl-coenzyme A synthetase, putative	complement(join(438406..439551,439640..439903,439969..440448,440540..440695))	Theileria annulata	3862731
TA07300	CDS	TA07300	NC_011098.1	442216	443417	D	Tap349h10.p1c.cand.65 - score = 31.55; uncharacterized protein	join(442216..442413,442631..442799,442831..443417)	Theileria annulata	3862732
TA07305	CDS	TA07305	NC_011098.1	443508	444026	R	Tap349h10.p1c.C.cand.159 - score = 19.86; uncharacterized protein	complement(443508..444026)	Theileria annulata	3862733
TA07310	CDS	TA07310	NC_011098.1	444153	445469	R	Tap349h10.p1c.C.cand.158 - score = 35.79; lipid-binding/transfer protein, putative	complement(444153..445469)	Theileria annulata	3862734
TA07315	CDS	TA07315	NC_011098.1	446040	447911	D	Tap349h10.p1c.cand.67 - score = 33.07; uncharacterized protein	join(446040..446179,446273..447911)	Theileria annulata	3862735
TA07320	CDS	TA07320	NC_011098.1	447952	448520	R	Tap349h10.p1c.C.cand.157 - score = 11.20; (Mago nashi homologue) sex determination protein, putative	complement(join(447952..448259,448327..448445,448489..448520))	Theileria annulata	3862736
TA07325	CDS	TA07325	NC_011098.1	448688	451006	R	Tap349h10.p1c.C.cand.156 - score = 38.27; uncharacterized protein	complement(448688..451006)	Theileria annulata	3862737
TA07330	CDS	TA07330	NC_011098.1	451349	456445	D	uncharacterized protein	join(451349..454505,454548..456445)	Theileria annulata	3862738
TA07335	CDS	TA07335	NC_011098.1	456557	456955	D	Tap349h10.p1c.cand.68 - score = 118.75; bromodomain containing protein, putative	456557..456955	Theileria annulata	3862739
TA07340	CDS	TA07340	NC_011098.1	457240	460431	D	Tap349h10.p1c.cand.69 - score = 61.62; 7 probable transmembrane helices predicted for TA07340 by TMHMM2.0 at aa 65-83, 104-126, 130-152, 173-195, 244-266, 705-724 and 739-761; uncharacterized protein	join(457240..457524,457622..457952,457984..458117,458170..458441,458472..458521,458587..459096,459155..459651,459715..460431)	Theileria annulata	3862740
TA07345	CDS	TA07345	NC_011098.1	460715	462233	D	Tap349h10.p1c.cand.70 - score = 39.56; DNA damage response protein (pescadillo homologue), putative	join(460715..461413,461452..461785,461815..461942,462007..462085,462118..462233)	Theileria annulata	3862741
TA07350	CDS	TA07350	NC_011098.1	462484	463828	D	Tap349h10.p1c.cand.71 - score = 26.69; 1 probable transmembrane helix predicted for TA07350 by TMHMM2.0 at aa 278-300; DNA repair (Rad51 homologue) protein, putative	join(462484..462622,462666..462958,463060..463342,463434..463828)	Theileria annulata	3862742
TA07355	CDS	TA07355	NC_011098.1	463902	467908	R	Tap349h10.p1c.C.cand.155 - score = 73.00; 6 probable transmembrane helices predicted for TA07355 by TMHMM2.0 at aa 32-51, 99-121, 136-158, 211-233, 582-604 and 611-633; uncharacterized protein	complement(join(463902..464959,464992..465439,465502..465810,465882..466218,466289..466747,466799..466948,467004..467435,467492..467604,467638..467717,467749..467908))	Theileria annulata	3863078
TA07360	CDS	TA07360	NC_011098.1	468355	471149	D	Tap349h10.p1c.cand.72 - score = 50.32; uncharacterized protein	join(468355..469102,469157..470007,470037..470122,470161..470224,470256..471149)	Theileria annulata	3863079
TA07365	CDS	TA07365	NC_011098.1	471329	472336	D	Tap349h10.p1c.cand.73 - score = 29.74; uncharacterized protein	471329..472336	Theileria annulata	3863080
TA07370	CDS	TA07370	NC_011098.1	472628	473680	D	Tap349h10.p1c.cand.74 - score = 18.68; Spm1 homologue, putative	472628..473680	Theileria annulata	3863081
TA07375	CDS	TA07375	NC_011098.1	473752	474737	R	Tap349h10.p1c.C.cand.154 - score = 33.13; uncharacterized protein	complement(join(473752..473851,473882..473994,474023..474125,474167..474311,474344..474431,474594..474737))	Theileria annulata	3863082
TA07380	CDS	TA07380	NC_011098.1	474892	476154	D	Tap349h10.p1c.cand.75 - score = 26.94; 26S proteasome (regulatory) subunit, putative	join(474892..475161,475251..475382,475491..475587,475620..475702,475746..475868,475963..476154)	Theileria annulata	3863083
TA07385	CDS	TA07385	NC_011098.1	476223	476892	R	Tap349h10.p1c.C.cand.153 - score = 20.36; uncharacterized protein	complement(join(476223..476464,476571..476648,476686..476793,476826..476892))	Theileria annulata	3863084
TA07390	CDS	TA07390	NC_011098.1	477059	477439	R	Tap349h10.p1c.C.cand.152 - score = 12.85; 60S ribosomal protein L36, putative	complement(join(477059..477357,477391..477439))	Theileria annulata	3863085
TA07400	CDS	TA07400	NC_011098.1	477784	479620	R	Tap349h10.p1c.C.cand.151 - score = 24.88; uncharacterized protein	complement(join(477784..477929,478097..478202,478356..478529,478679..478834,478912..479124,479176..479335,479415..479620))	Theileria annulata	3863087
TA07405	CDS	TA07405	NC_011098.1	480145	481189	D	Tap349h10.p1c.cand.76 - score = 21.05; 1 probable transmembrane helix predicted for TA07405 by TMHMM2.0 at aa 7-29; uncharacterized protein	join(480145..480249,480295..480889,480957..481189)	Theileria annulata	3863088
TA07410	CDS	TA07410	NC_011098.1	481335	484926	R	Tap349h10.p1c.C.cand.150 - score = 93.48; uncharacterized protein	complement(join(481335..481497,481592..484926))	Theileria annulata	3863089
TA07415	CDS	TA07415	NC_011098.1	486228	487453	D	Tap349h10.p1c.cand.77 - score = 26.65; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA07415 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.722 between residues 18 and 19; peptide chain release factor, putative	join(486228..486409,486443..486540,486572..487185,487253..487453)	Theileria annulata	3863090
TA07420	CDS	TA07420	NC_011098.1	487565	488319	R	Tap349h10.p1c.C.cand.149 - score = 24.86; p36 (Toxoplasma gondii) homologue, putative	complement(join(487565..487711,487743..487824,487890..488127,488157..488319))	Theileria annulata	3863091
TA07425	CDS	TA07425	NC_011098.1	489175	490732	R	uncharacterized protein	complement(join(489175..489444,489555..490137,490210..490578,490638..490732))	Theileria annulata	3863092
TA07430	CDS	TA07430	NC_011098.1	491747	494563	D	Tap349h10.p1c.cand.78 - score = 53.82; uncharacterized protein	491747..494563	Theileria annulata	3863093
TA07435	CDS	TA07435	NC_011098.1	494745	496334	R	Tap349h10.p1c.C.cand.147 - score = 26.38; SfiI-subtelomeric fragment related protein family member, putative	complement(494745..496334)	Theileria annulata	3863094
TA07440	CDS	TA07440	NC_011098.1	496513	498874	R	Tap349h10.p1c.C.cand.146 - score = 31.12; uncharacterized protein	complement(join(496513..496632,496733..496891,496978..497194,497275..497503,497643..497818,497879..497956,497988..498092,498153..498241,498300..498461,498494..498659,498727..498800,498842..498874))	Theileria annulata	3863095
TA07445	CDS	TA07445	NC_011098.1	499269	501458	D	Tap349h10.p1c.cand.79 - score = 30.89; GTPase activator, putative	join(499269..500306,500454..500518,500585..500661,500737..500877,500962..501093,501151..501458)	Theileria annulata	3863096
TA07455	CDS	TA07455	NC_011098.1	501738	502272	D	Tap349h10.p1c.cand.80 - score = 8.98; 1 probable transmembrane helix predicted for TA07455 by TMHMM2.0 at aa 2-21; Signal peptide predicted for TA07455 by SignalP 2.0 HMM (Signal peptide probability 0.761, signal anchor probability 0.235) with cleavage site probability 0.699 between residues 21 and 22; uncharacterized protein	join(501738..501983,502088..502152,502188..502272)	Theileria annulata	3862744
TA07460	CDS	TA07460	NC_011098.1	502445	504584	D	Tap349h10.p1c.cand.81 - score = 34.61; vesicle transport (Sec1 family) protein, putative	join(502445..503408,503473..503742,503807..504189,504297..504584)	Theileria annulata	3862745
TA07465	CDS	TA07465	NC_011098.1	504755	506362	R	Tap349h10.p1c.C.cand.145 - score = 26.88; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA07465 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.450 between residues 17 and 18; translation elongation factor, putative	complement(join(504755..504931,504974..505147,505236..505906,506026..506362))	Theileria annulata	3862746
TA07470	CDS	TA07470	NC_011098.1	506602	507555	D	Tap349h10.p1c.cand.82 - score = 13.56; 2 probable transmembrane helices predicted for TA07470 by TMHMM2.0 at aa 13-32 and 177-194; Signal peptide predicted for TA07470 by SignalP 2.0 HMM (Signal peptide probability 0.788, signal anchor probability 0.185) with cleavage site probability 0.566 between residues 27 and 28; uncharacterized protein	join(506602..506621,506666..506712,506805..506991,507045..507555)	Theileria annulata	3862747
TA07475	CDS	TA07475	NC_011098.1	507626	509578	R	Tap349h10.p1c.C.cand.144 - score = 38.00; SfiI-subtelomeric fragment related protein family member, putative	complement(507626..509578)	Theileria annulata	3862748
TA07480	CDS	TA07480	NC_011098.1	509924	511396	R	Tap349h10.p1c.C.cand.143 - score = 21.25; 8 probable transmembrane helices predicted for TA07480 by TMHMM2.0 at aa 21-40, 113-135, 147-169, 211-233, 240-262, 370-392, 399-421 and 464-486; Signal peptide predicted for TA07480 by SignalP 2.0 HMM (Signal peptide probability 0.981, signal anchor probability 0.002) with cleavage site probability 0.547 between residues 37 and 38; GPI-Anchor Signal predicted for TA07480 by DGPI v2.04 with cleavage site probability 0.103199996 near 452; uncharacterized protein	complement(509924..511396)	Theileria annulata	3862749
TA07485	CDS	TA07485	NC_011098.1	512301	513197	D	Tap349h10.p1c.cand.83 - score = 16.77; uncharacterized protein	join(512301..512387,512417..512508,512538..512599,512672..512778,512864..512937,513020..513197)	Theileria annulata	3862750
TA07490	CDS	TA07490	NC_011098.1	513327	514998	R	Tap349h10.p1c.C.cand.142 - score = 60.16; uncharacterized protein	complement(join(513327..513470,513538..514998))	Theileria annulata	3862751
TA07495	CDS	TA07495	NC_011098.1	515064	516530	R	Tap349h10.p1c.C.cand.142 - score = 60.16; uncharacterized protein	complement(join(515064..516291,516442..516530))	Theileria annulata	3862752
TA07500	CDS	TA07500	NC_011098.1	518510	521273	R	Tap349h10.p1c.C.cand.141 - score = 54.72; uncharacterized protein	complement(join(518510..518641,518672..518770,518890..518988,519018..521054,521148..521273))	Theileria annulata	3862753
TA07510	CDS	TA07510	NC_011098.1	522173	523211	R	uncharacterized protein	complement(join(522173..522215,522245..522322,522398..522616,522717..522799,522829..522923,522956..523048,523127..523211))	Theileria annulata	3862755
TA07515	CDS	TA07515	NC_011098.1	524461	527077	D	pumilio-family RNA-binding protein, putative	join(524461..524515,524545..524605,524701..527077)	Theileria annulata	3862756
TA07520	CDS	TA07520	NC_011098.1	527851	529867	R	Tap349h10.p1c.C.cand.138 - score = 32.08; uncharacterized protein	complement(join(527851..529011,529103..529180,529286..529664,529710..529867))	Theileria annulata	3862757
TA07525	CDS	TA07525	NC_011098.1	530238	533009	D	Tap349h10.p1c.cand.88 - score = 79.13; DEAD-family helicase, putative	join(530238..530435,530470..530595,530664..531060,531090..531256,531297..531476,531505..531593,531626..531742,531803..531922,531971..532175,532235..532536,532609..532796,532825..533009)	Theileria annulata	3862758
TA07530	CDS	TA07530	NC_011098.1	533602	534009	D	Tap349h10.p1c.cand.89 - score = 13.62; 40S ribosomal protein S24, putative	533602..534009	Theileria annulata	3862759
TA07535	CDS	TA07535	NC_011098.1	534059	535287	R	Tap349h10.p1c.C.cand.137 - score = 28.19; 7 probable transmembrane helices predicted for TA07535 by TMHMM2.0 at aa 39-61, 92-114, 119-136, 149-171, 175-197, 225-247 and 276-295; Signal anchor predicted for TA07535 by SignalP 2.0 HMM (Signal peptide probability 0.275, signal anchor probability 0.660) with cleavage site probability 0.102 between residues 63 and 64; prenyltransferase (protoheme farnesyltransferase), putative	complement(join(534059..534194,534251..534393,534424..534627,534664..534740,534773..534936,534998..535191,535225..535287))	Theileria annulata	3862760
TA07540	CDS	TA07540	NC_011098.1	536058	539015	D	Tap349h10.p1c.cand.90 - score = 68.84; eukaryotic translation initiation factor, putative	join(536058..536091,536130..536381,536474..537379,537581..537696,537733..537880,537952..538049,538125..538262,538350..538474,538516..538807,538899..539015)	Theileria annulata	3862761
TA07545	CDS	TA07545	NC_011098.1	539060	539959	R	Tap349h10.p1c.C.cand.136 - score = 19.61; SMART DCX (SM00537) at aa 158-240, E()=2.43e-04; CT (SM00441) at aa 16-83, E()=3.22e+03; SPRY (SM00449) at aa 96-200, E()=2.87e+03; overlapping pfam:Pox_A3C (PF05288) at aa 154-219, E()=9.90e+00; overlapping pfam:DCX (PF03607) at aa 179-239, E()=1.60e-01; KOW (SM00739) at aa 193-213, E()=3.88e+03; uncharacterized protein	complement(join(539060..539130,539160..539268,539328..539864,539903..539959))	Theileria annulata	3862762
TA07550	CDS	TA07550	NC_011098.1	540305	541930	R	Tap349h10.p1c.C.cand.135 - score = 42.78; SMART pfam:TYA (PF01021) at aa 1-427, E()=5.20e+00; pfam:Cornifin (PF02389) at aa 27-213, E()=2.40e+00; S_TK_X (SM00133) at aa 90-143, E()=2.24e+03; RICIN (SM00458) at aa 187-345, E()=3.20e03; NEAT (SM00725) at aa 209-352, E()=8.72e+05; ZM (SM00735) at aa 263-286, E()=6.50e+03; CRF (SM00039) at aa 328-364, E()=2.53e+03; PRY (SM00589) at aa 329-373, E()=5.59e+03; SOCS (SM00253) at aa 329-369, E()=2.42e+03; uncharacterized protein	complement(540305..541930)	Theileria annulata	3862763
TA07555	CDS	TA07555	NC_011098.1	542934	543796	R	Tap349h10.p1c.C.cand.134 - score = 21.66; SMART pfam:zf-C3HC4 (PF00097) at aa 43-79, E()=6.00e-02; pfam:Mnd1 (PF03962) at aa 12-144, E()=7.80e+00; ArfGap (SM00105) at aa 26-130, E()=6.59e+02; LIM (SM00132) at aa 29-66, E()=1.96e+03; PHD (SM00249) at aa 30-67, E()=1.03e+03; RINGv (SM00744) at aa 42-67, E()=3.55e+03; RING (SM00184) at aa 43-181, E()=2.85e+00; HMG (SM00398) at aa 50-112, E()=2.96e+03; TRASH (SM00746) at aa 62-93, E()=1.16e+06; pfam:Troponin (PF00992) at aa 73-209, E()=5.90e+00; pfam:DUF466 (PF04328) at aa 99-154, E()=7.40e+00; uncharacterized protein	complement(join(542934..543697,543727..543796))	Theileria annulata	3862764
TA07570	CDS	TA07570	NC_011098.1	544117	545995	D	Tap349h10.p1c.cand.92 - score = 45.09; SMART 2 BBOX (SM00336) at aa 252-309, E()=6.05e-04; 314-359, E()=4.54e-01; RPEL (SM00707) at aa 15-41, E()=2.70e+03; EH (SM00027) at aa 56-138, E()=3.62e+03; NGF (SM00140) at aa 140-195, E()=6.12e+02; HintC (SM00305) at aa 185-231, E()=1.08e+03; JAS_MPN (SM00232) at aa 185-329, E()=5.5e+02; DNaseIc (SM00476) at aa 237-430, E()=5.09e+03; overlapping pfam:FYVE (PF01363) at aa 245-296, E()=5.20e-01; FYVE (SM00064) at aa 246-296, E()=8.19e+00; AWS (SM00570) at aa 252-305, E()=2.86e+03; overlapping pfam:zf-B_box (PF00643) at aa 252-309, E()=4.90e-03; FES (SM00525) at aa 253-272, E()=6.90e+03; PHD (SM00249) at aa 256-335, E()=5.35e+02; DM6 (SM00689) at aa 256-368, E()=1.09e+03; overlapping pfam:PHD (PF00628) at aa 256-293, E()=2.00e+00; uncharacterized protein	join(544117..544266,544360..544487,544517..544581,544615..544722,544752..544999,545062..545295,545326..545443,545490..545995)	Theileria annulata	3862767
TA07575	CDS	TA07575	NC_011098.1	546109	547173	R	Tap349h10.p1c.C.cand.133 - score = 24.23; SMART 6 transmembrane domains at aa 37-59, 119-141, 148-165, 169-191, 212-234 and 244-286; 6 probable transmembrane helices predicted for TA07575 by TMHMM2.0 at aa 37-59, 119-141, 148-165, 169-191, 212-234 and 244-266; uncharacterized protein	complement(546109..547173)	Theileria annulata	3862768
TA07580	CDS	TA07580	NC_011098.1	547914	548168	R	Tap349h10.p1c.C.cand.132 - score = 9.16; SMART pfam:BolA (PF01722) at aa 1-77, E()=6.70e-24; uncharacterized protein	complement(547914..548168)	Theileria annulata	3862769
TA07585	CDS	TA07585	NC_011098.1	548490	557220	R	Tap349h10.p1c.C.cand.130 - score = 192.95; SMART 1 transmembrane domain at aa 34-51; 1 probable transmembrane helix predicted for TA07585 by TMHMM2.0 at aa 34-51; Signal anchor predicted for TA07585 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.747) with cleavage site probability 0.000 between residues 24 and 25; uncharacterized protein	complement(join(548490..549118,549157..555937,555971..556237,556269..556874,556906..557220))	Theileria annulata	3862770
TA07590	CDS	TA07590	NC_011098.1	558238	558762	R	Tap349h10.p1c.C.cand.129 - score = 21.36; SMART pfam:Ribosomal_S11 (PF00411) at aa 29-147, E()=1.70e-67; pfam:Ribosomal_L18p (PF00861) at aa 2.30e+00; PGRP (SM00701) at aa 20-104, E()=4.69e+03; 40S ribosomal protein S11, putative	complement(join(558238..558343,558374..558551,558591..558762))	Theileria annulata	3862771
TA07595	CDS	TA07595	NC_011098.1	559420	561010	D	gene model may need to be refined (small strand overlap with TA07600 at the 3' end); SMART 1 transmembrane domain at aa 7-29; pfam: PseudoU_synth_1 (PF01416) at aa 348-457, E()=5.20e-07; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA07595 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA07595 by SignalP 2.0 HMM (Signal peptide probability 0.646, signal anchor probability 0.009) with cleavage site probability 0.430 between residues 22 and 23; tRNA-pseudouridine synthase I, putative	join(559420..560277,560308..560443,560477..560559,560588..560688,560718..560790,560819..561010)	Theileria annulata	3862772
TA07600	CDS	TA07600	NC_011098.1	561007	561831	R	gene model may need to be refined (small strand overlap with TA07595 at the 3' end); uncharacterized protein	complement(561007..561831)	Theileria annulata	3862773
TA07605	CDS	TA07605	NC_011098.1	561910	564042	R	Tap349h10.p1c.C.cand.126 - score = 107.93; SMART pfam:GTP_EFTU (PF00009) at aa 107-270, E()=2.80e-06; pfam:ras (PF00071) at aa 112-253, E()=6.40e-02; pfam:DUF164 (PF02591) at aa 365-577, E()=5.20e-02; GTPase-activity protein, or translation initiation factor IF-2 mitochondrial precursor, putative	complement(join(561910..562041,562070..562162,562194..562352,562387..562458,562491..562769,562806..563001,563032..563663,563749..564042))	Theileria annulata	3862774
TA07610	CDS	TA07610	NC_011098.1	564081	565640	R	Tap349h10.p1c.C.cand.126 - score = 107.93; SMART 1 transmembrane domain at aa 13-35; 1 probable transmembrane helix predicted for TA07610 by TMHMM2.0 at aa 13-35; uncharacterized protein	complement(join(564081..564242,564273..565640))	Theileria annulata	3862775
TA07615	CDS	TA07615	NC_011098.1	565894	567344	R	Tap349h10.p1c.C.cand.125 - score = 45.35; uncharacterized protein	complement(join(565894..566078,566112..566200,566405..566496,566526..566594,566626..566772,566804..566861,566898..567004,567037..567109,567151..567344))	Theileria annulata	3862776
TA07620	CDS	TA07620	NC_011098.1	567501	568033	R	Tap349h10.p1c.C.cand.125 - score = 45.35; SMART RL11 (SM00649) at aa 13-144, E()=2.45e-47; 60S ribosomal protein L12, putative	complement(join(567501..567961,567997..568033))	Theileria annulata	3862777
TA07625	CDS	TA07625	NC_011098.1	568123	568326	R	Tap349h10.p1c.C.cand.125 - score = 45.35; uncharacterized protein	complement(568123..568326)	Theileria annulata	3862778
TA07630	CDS	TA07630	NC_011098.1	568405	569605	R	Tap349h10.p1c.C.cand.124 - score = 28.48; SMART 3 transmembrane domains at 20-42, 139-161 and 190-212; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA07630 by TMHMM2.0 at aa 20-42, 139-161 and 190-212; Signal anchor predicted for TA07630 by SignalP 2.0 HMM (Signal peptide probability 0.019, signal anchor probability 0.933) with cleavage site probability 0.009 between residues 37 and 38; uncharacterized protein	complement(join(568405..568668,568700..568822,568856..568954,569105..569254,569290..569420,569452..569605))	Theileria annulata	3862779
TA07635	CDS	TA07635	NC_011098.1	570101	571682	R	Tap349h10.p1c.C.cand.123 - score = 123.37; uncharacterized protein	complement(join(570101..570445,570476..570575,570607..570670,570700..570934,570967..571131,571162..571244,571277..571682))	Theileria annulata	3862780
TA07639	CDS	TA07639	NC_011098.1	571820	573699	R	uncharacterized protein	complement(join(571820..571957,571998..572210,572326..572448,572481..572638,572672..572936,572971..573036,573070..573186,573217..573259,573387..573575,573609..573673,573697..573699))	Theileria annulata	3862781
TA07640	CDS	TA07640	NC_011098.1	573891	575588	R	Tap349h10.p1c.C.cand.123 - score = 123.37; SMART 8 WD40 (SM00320) at aa 553-591, E()=6.42e-01; 594-633, E()=8.47e-12; 635-681, E()=6.73e-06; 684-724, E()=1.11e-06; 727-808, E()=5.50e+01; 813-852, E()=6.32e-11; 855-894, E()=2.95e-11; 897-929, E()=8.52e+01; uncharacterized protein	complement(join(573891..574016,574052..574147,574180..574262,574296..574357,574389..574501,574536..574628,574658..574723,574755..575588))	Theileria annulata	3862567
TA07645	CDS	TA07645	NC_011098.1	575996	579620	D	Tap349h10.p1c.cand.95 - score = 69.76; uncharacterized protein	join(575996..576309,576341..579620)	Theileria annulata	3862568
TA07650	CDS	TA07650	NC_011098.1	580336	581512	D	Tap349h10.p1c.cand.96 - score = 28.97; SMART 7 WD40 (SM00320) at aa 13-55, E()=6.90e-01; 65-104, E()=6.84e-07; 107-146, E()=8.60e-13; 148-191, E()=1.76e-09; 194-233, E()=1.20e-11; 236-273, E()=1.29e-02; and 276-321, E()=6.89e-03; guanine-nucleotide binding protein, putative	join(580336..580477,580588..581009,581081..581512)	Theileria annulata	3862569
TA07655	CDS	TA07655	NC_011098.1	581636	582750	D	Tap349h10.p1c.cand.97 - score = 61.54; SMART 10 LRR_SD22 (SM00365) domains, at aa 21-40, E()=5.54e+02; 41-62, E()=4.30e-05; 63-84, E()=3.55e-06; 85-106, E()=2.01e-05; 107-128, E()=3.11e-02; 129-150, E()=4.48e+01; 151-177, E()=6.03e+02; 196-217, E()=4.06e+02; 219-240, E()=2.71e-02; 241-259, E()=4.01e+01; LRR_TYP (SM00369) at aa 172-195, E()=1.01e+02; protein phosphatase regulator subunit, putative	join(581636..581770,581811..581941,581970..582069,582100..582234,582264..582419,582452..582538,582568..582750)	Theileria annulata	3862570
TA07660	CDS	TA07660	NC_011098.1	582887	584299	D	Tap349h10.p1c.cand.97 - score = 61.54; uncharacterized protein	join(582887..583194,583287..583458,583488..583760,583814..584041,584084..584299)	Theileria annulata	3862571
TA07665	CDS	TA07665	NC_011098.1	584388	585119	R	Tap349h10.p1c.C.cand.122 - score = 16.38; uncharacterized protein	complement(584388..585119)	Theileria annulata	3862572
TA07675	CDS	TA07675	NC_011098.1	586221	587770	D	Tap349h10.p1c.cand.98 - score = 20.01; SMART PINT (SM00088) at aa 251-344, E()=1.10e-10; 26S proteasome subunit, putative	join(586221..586482,586514..586602,586664..586804,586948..587055,587138..587278,587339..587595,587674..587770)	Theileria annulata	3862574
TA07680	CDS	TA07680	NC_011098.1	587818	589011	R	Tap349h10.p1c.C.cand.121 - score = 28.83; SMART pfam:Peptidase_M22 (PF00814) at aa 13-296, E()=1.50e-68; pfam:TPK_catalytic (PF04263) at aa 220-313, E()=5.00e-02; glycoprotein endopeptidase, putative	complement(join(587818..587939,587989..588129,588183..589011))	Theileria annulata	3862575
TA07685	CDS	TA07685	NC_011098.1	589218	590396	R	Tap349h10.p1c.C.cand.120 - score = 27.98; uncharacterized protein	complement(589218..590396)	Theileria annulata	3862576
TA07690	CDS	TA07690	NC_011098.1	590702	593278	D	Tap349h10.p1c.cand.100 - score = 60.93; SMART DYNc (SM00053) at aa 6-253, E()=2.74e-90; GED (SM00302) at aa 550-641, E()=4.38e-13; dynamin, putative	join(590702..590749,590857..591591,591650..592187,592257..593278)	Theileria annulata	3862577
TA07695	CDS	TA07695	NC_011098.1	594309	597080	D	Tap349h10.p1c.cand.102 - score = 60.83; SMART pfam:Adaptin_N (PF01602) at aa 19-558, E()=3.80e-34; coatamer, gamma subunit, putative	594309..597080	Theileria annulata	3862578
TA07700	CDS	TA07700	NC_011098.1	597324	597721	D	Tap349h10.p1c.cand.103 - score = 15.31; SMART pfam:DSS1_SEM1 (PF05160) at aa 13-83, E()=9.40e-02; uncharacterized protein	join(597324..597444,597538..597600,597633..597721)	Theileria annulata	3862579
TA07705	CDS	TA07705	NC_011098.1	597762	598322	R	Tap349h10.p1c.C.cand.119 - score = 28.39; uncharacterized protein	complement(597762..598322)	Theileria annulata	3862580
TA07710	CDS	TA07710	NC_011098.1	598439	599441	R	Tap349h10.p1c.C.cand.119 - score = 28.39; uncharacterized protein	complement(join(598439..598597,598669..598733,598793..598910,598976..599065,599113..599220,599286..599441))	Theileria annulata	3862581
TA07715	CDS	TA07715	NC_011098.1	600112	601521	D	Tap349h10.p1c.cand.104 - score = 15.03; SMART pfam:zf-DHHC (PF01529) at aa 135-199, E()=9.70e-31; 3 transmembrane domains at aa 38-60, 75-97 and 229-251; 4 probable transmembrane helices predicted for TA07715 by TMHMM2.0 at aa 38-60, 75-97, 192-214 and 229-251; uncharacterized protein	600112..601521	Theileria annulata	3862582
TA07720	CDS	TA07720	NC_011098.1	601769	603265	D	Tap349h10.p1c.cand.105 - score = 15.74; SMART 10 transmembrane domains at aa 13-35, 126-148, 160-182, 187-209, 222-244, 275-297, 310-329, 358-380, 399-421 and 431-453; 10 probable transmembrane helices predicted for TA07720 by TMHMM2.0 at aa 13-35, 126-148, 160-182, 187-209, 222-244, 275-297, 310-329, 358-380, 399-421 and 431-453; Tpr-related protein family member, putative	601769..603265	Theileria annulata	3862583
TA07730	CDS	TA07730	NC_011098.1	603409	605280	D	Tap349h10.p1c.cand.106 - score = 33.64; SMART 9 transmembrane domains at aa 22-44, 238-260, 270-292, 333-355, 375-397, 410-432, 474-496, 517-539, and 549-551; 9 probable transmembrane helices predicted for TA07730 by TMHMM2.0 at aa 22-44, 238-260, 270-292, 333-355, 375-397, 410-432, 474-496, 517-539 and 549-571; Tpr-related protein family member, putative	603409..605280	Theileria annulata	3862585
TA07735	CDS	TA07735	NC_011098.1	606476	607849	R	Tap349h10.p1c.C.cand.118 - score = 20.84; SMART pfam:Cdc73 (PF05179) at aa 170-406, E()=8.20e-08; uncharacterized protein	complement(join(606476..606732,606797..606955,607045..607849))	Theileria annulata	3862586
TA07740	CDS	TA07740	NC_011098.1	608077	608776	D	Tap349h10.p1c.cand.107 - score = 11.72; SMART pfam:NUDIX (PF00293) at aa 8-141, E()=2.20e-17; Bis-(5' nucleosyl)-tetraphosphatase, putative	join(608077..608209,608346..608452,608513..608625,608674..608776)	Theileria annulata	3862782
TA07745	CDS	TA07745	NC_011098.1	608817	609234	R	U6 snRNP protein Lsm2, putative	complement(join(608817..608954,609017..609134,609152..609234))	Theileria annulata	3862783
TA07750	CDS	TA07750	NC_011098.1	609950	613075	D	1 probable transmembrane helix predicted for TA07750 by TMHMM2.0 at aa 838-860; cell surface/extracellular protein, putative	join(609950..610013,610212..612581,612643..612723,612796..612865,612949..613075)	Theileria annulata	3862784
TA07755	CDS	TA07755	NC_011098.1	613612	615928	D	thrombospondin-related protein, putative	join(613612..614182,614501..615508,615623..615730,615795..615928)	Theileria annulata	3862785
TA07760	CDS	TA07760	NC_011098.1	615976	617045	D	Tap349h10.p1c.cand.110 - score = 17.61; uncharacterized protein	join(615976..616314,616356..616592,616656..617045)	Theileria annulata	3862786
TA07765	CDS	TA07765	NC_011098.1	617134	619386	R	Tap349h10.p1c.C.cand.116 - score = 29.43; SMART 9 transmembrane domains at aa 46-69, 90-112, 122-144, 151-173, 188-210, 272-294, 309-328, 637-659 and 664-683; 9 probable transmembrane helices predicted for TA07765 by TMHMM2.0 at aa 47-69, 90-112, 122-144, 151-173, 188-210, 272-294, 309-328, 637-659 and 664-683; Tpr-related protein family member, putative	complement(617134..619386)	Theileria annulata	3862787
TA07770	CDS	TA07770	NC_011098.1	619556	621646	R	Tap349h10.p1c.C.cand.115 - score = 35.85; SMART 10 transmembrane domains at aa 21-43, 336-358, 370-392, 396-418, 439-461, 486-508, 521-539, 578-600, 620-642 and 652-674; pfam:PspA_IM30 (PF04012) at aa 73-299, E()=2.10e-02; 10 probable transmembrane helices predicted for TA07770 by TMHMM2.0 at aa 21-43, 336-358, 370-392, 396-418, 439-461, 486-508, 521-539, 578-600, 620-642 and 652-674; Tpr-related protein family member, putative	complement(619556..621646)	Theileria annulata	3862788
TA07775	CDS	TA07775	NC_011098.1	621817	622391	R	Tap349h10.p1c.C.cand.114 - score = 138.27; uncharacterized protein	complement(join(621817..621915,621984..622201,622256..622391))	Theileria annulata	3862789
TA07790	CDS	TA07790	NC_011098.1	622715	623438	R	Tap349h10.p1c.C.cand.114 - score = 138.27; SMART pfam:Ribosomal_S4 (PF00163) at aa 4-106, E()=1.60e-31; S4 (SM00363) at aa 107-171, E()=9.82e-05; 40S ribosomal protein S9, putative	complement(join(622715..623064,623135..623288,623376..623438))	Theileria annulata	3862792
TA07795	CDS	TA07795	NC_011098.1	623694	625303	R	Tap349h10.p1c.C.cand.114 - score = 138.27; uncharacterized protein	complement(join(623694..623813,623957..625303))	Theileria annulata	3862793
TA07800	CDS	TA07800	NC_011098.1	625548	629563	R	Tap349h10.p1c.C.cand.114 - score = 138.27; SMART pfan:Peptidase_M24 (PF00557) at aa 228-430, E()=3.50e-03; transcription modulator, putative	complement(join(625548..625937,626001..626244,626357..626707,626776..626980,627061..627322,627384..627600,627669..627941,628006..628223,628280..628471,628555..628731,628762..628902,628973..629124,629169..629257,629394..629563))	Theileria annulata	3862794
TA07805	CDS	TA07805	NC_011098.1	630154	631179	D	Tap349h10.p1c.cand.112 - score = 18.62; SMART 2 RRM (SM00360) at aa 8-78, E()=2.56e-21; 104-173, E()=1.26e-02; splicing factor, putative	join(630154..630471,630599..630779,630869..631179)	Theileria annulata	3862795
TA07810	CDS	TA07810	NC_011098.1	631355	632071	D	Tap349h10.p1c.cand.113 - score = 19.59; uncharacterized protein	631355..632071	Theileria annulata	3862796
TA07815	CDS	TA07815	NC_011098.1	632204	633114	R	Tap349h10.p1c.C.cand.113 - score = 18.51; SMART pfam:proteasome (PF00227) at aa 12-199, E()=6.70e-38; proteasome subunit, putative	complement(join(632204..632329,632362..632468,632546..632687,632764..632833,632925..633032,633068..633114))	Theileria annulata	3862797
TA07820	CDS	TA07820	NC_011098.1	633399	634880	R	Tap349h10.p1c.C.cand.112 - score = 38.09; SMART CYCLIN (SM00385) at aa 47-126, E()=6.55e-02; cyclin-related protein, putative	complement(633399..634880)	Theileria annulata	3862798
TA07825	CDS	TA07825	NC_011098.1	636741	637481	D	Tap349h10.p1c.cand.114 - score = 7.46; SMART 2 domains pfam:ATP-synt_C (PF00137) at aa 12-77, E()=2.00e-10; 90-155, E()=4.80e-16; 4 probable transmembrane helices predicted for TA07825 by TMHMM2.0 at aa 10-32, 53-75, 90-112 and 132-154; vacuolar H+-ATPase subunit, putative	join(636741..636813,636896..637054,637143..637222,637293..637481)	Theileria annulata	3862799
TA07830	CDS	TA07830	NC_011098.1	637557	639357	R	SMART RRM (SM00360) at aa 109-182, E()=6.37e-08; PWI (SM00311) at aa 476-552, E()=1.01e-03; uncharacterized protein	complement(join(637557..638687,638754..638906,638971..639357))	Theileria annulata	3862800
TA07835	CDS	TA07835	NC_011098.1	640379	640821	D	Tap349h10.p1c.cand.115 - score = 9.46; SMART pfam:UPF0099 (PF01981) at aa 27-110, E()=1.00e-01; uncharacterized protein	join(640379..640491,640557..640821)	Theileria annulata	3862941
TA07840	CDS	TA07840	NC_011098.1	641086	641496	R	Tap349h10.p1c.C.cand.109 - score = 13.20; SMART H3 (SM00428) at aa 34-136, E()=1.07e-71; histone H3, putative	complement(641086..641496)	Theileria annulata	3862942
TA07845	CDS	TA07845	NC_011098.1	642630	643013	D	Tap349h10.p1c.cand.116 - score = 14.82; SMART H2A (SM00414) at aa 4-124, E()=7.37e-75; histone H2A, putative	642630..643013	Theileria annulata	3862943
TA07850	CDS	TA07850	NC_011098.1	643569	646734	D	Tap349h10.p1c.cand.117 - score = 60.80; SMART 3 TPR domains (SM00028) at aa 139-172, E()=8.87e+00; 384-417, E()=4.80e+01; 797-830, E()=1.53e+00; transcription factor, putative	join(643569..643696,643744..644179,644265..644989,645023..645426,645530..645709,645773..645968,646046..646250,646328..646467,646500..646734)	Theileria annulata	3862944
TA07855	CDS	TA07855	NC_011098.1	647000	648372	D	SMART pfam:Ribosomal_L19 (PF01245) at aa 122-221, E()=3.50e-07; uncharacterized protein	join(647000..647407,647445..647526,647583..647704,647747..647870,647939..648112,648144..648189,648246..648372)	Theileria annulata	3862945
TA07860	CDS	TA07860	NC_011098.1	648406	649810	R	Tap349h10.p1c.C.cand.108 - score = 38.14; SMART ZnF_C2HC (SM00343) at aa 93-109, E()=5.37e+00; splicing factor (Hs SLU7 homologue), putative	complement(join(648406..648544,648615..648838,648884..649118,649188..649578,649636..649810))	Theileria annulata	3862946
TA07865	CDS	TA07865	NC_011098.1	650571	651659	D	Tap349h10.p1c.cand.119 - score = 14.40; SMART 3 transmembrane domains at aa 22-44, 56-78 and 188-210; pfam:zf-DHHC (PF01529) at aa 91-155, E()=1.10e-32; 4 probable transmembrane helices predicted for TA07865 by TMHMM2.0 at aa 22-44, 56-78, 145-167 and 188-210; Signal anchor predicted for TA07865 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.942) with cleavage site probability 0.001 between residues 19 and 20; uncharacterized protein	join(650571..650667,650699..650826,650922..651184,651238..651393,651443..651659)	Theileria annulata	3862947
TA07870	CDS	TA07870	NC_011098.1	652132	656167	R	Tap349h10.p1c.C.cand.105 - score = 89.12; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA07870 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.979 between residues 16 and 17; uncharacterized protein	complement(join(652132..652448,652520..653135,653220..653295,653364..653672,653742..656167))	Theileria annulata	3862948
TA07875	CDS	TA07875	NC_011098.1	656620	658380	D	Tap349h10.p1c.cand.120 - score = 33.83; SMART 2 PLDc domains (SM00155) at aa 162-189, E()=7.88e-04; 357-384, E()=1.02e-02; cardiolipin synthetase, putative	join(656620..656745,656775..656862,656904..657067,657138..657575,657635..657835,657876..658003,658037..658224,658253..658380)	Theileria annulata	3862949
TA07880	CDS	TA07880	NC_011098.1	658470	660864	R	Tap349h10.p1c.C.cand.104 - score = 90.49; uncharacterized protein	complement(join(658470..658907,658937..658981,659009..659170,659473..660864))	Theileria annulata	3862950
TA07885	CDS	TA07885	NC_011098.1	660975	663005	R	Tap349h10.p1c.C.cand.104 - score = 90.49; coatomer delta subunit, putative	complement(join(660975..661132,661331..661379,661475..661795,661858..662001,662033..662109,662139..662271,662325..662660,662700..662845,662879..663005))	Theileria annulata	3862951
TA07900	CDS	TA07900	NC_011098.1	663340	667300	D	Tap349h10.p1c.cand.121 - score = 125.29; SMART pfam:RNA_pol_Rpb2_1 (PF04563) at aa 10-274, E()=4.40e-15; pfam:RNA_pol_Rpb2_3 (PF04565) at aa 492-561, 3.30e-27; pfam:RNA_pol_Rpb2_6 (PF00562) at aa 746-1137, E()=3.10e-112; pfam:RNA_pol_Rpb2_7 (PF04560) at aa 1139-1209, E()=1.90e-12; 1 probable transmembrane helix predicted for TA07900 by TMHMM2.0 at aa 236-258; DNA-directed RNA polymerase I, second largest subunit, putative	join(663340..663511,663546..663785,663817..664042,664086..664359,664390..664584,664617..664767,664798..666600,666676..666965,666995..667300)	Theileria annulata	3862954
TA07905	CDS	TA07905	NC_011098.1	667450	669164	D	Tap349h10.p1c.cand.121 - score = 125.29; SMART MACPF (SM00457) at aa 215-400, E()=1.11e-01; MAC/perforin, putative	join(667450..667669,667699..667898,667951..668159,668189..668825,668858..669006,669035..669164)	Theileria annulata	3862955
TA07910	CDS	TA07910	NC_011098.1	669641	671755	R	SMART MACPF (SM00457) at aa 179-364, E()=9.11-01; MAC/perforin, putative	complement(join(669641..669780,669810..669888,669918..670006,670036..670138,670185..670302,670344..670483,670513..670931,670974..671176,671206..671441,671471..671755))	Theileria annulata	3862956
TA07915	CDS	TA07915	NC_011098.1	672308	673175	D	Tap349h10.p1c.cand.122 - score = 24.17; uncharacterized protein	join(672308..672386,672425..672639,672669..672761,672800..672876,672906..673012,673042..673175)	Theileria annulata	3862957
TA07920	CDS	TA07920	NC_011098.1	673211	675033	R	Tap349h10.p1c.C.cand.102 - score = 48.28; uncharacterized protein	complement(join(673211..674631,674664..675033))	Theileria annulata	3862958
TA07925	CDS	TA07925	NC_011098.1	675544	679792	R	Tap349h10.p1c.C.cand.101 - score = 105.93; SMART pfam:RNA_pol_Rpb2_1 (PF04563) at aa 73-484, E()=1.20e-44; pfam:RNA_pol_Rpb2_2 (PF04561) at aa 241-426, E()=3.10e-56; pfam:RNA_pol_Rpb2_3 (PF04565) at aa 517-585, E()=1.10e-35; pfam:RNA_pol_Rpb2_4 (PF04566) at aa 619-681, E()=9.40e-28; pfam:RNA_pol_Rpb2_5 (PF04567) at aa 701-747, E()=6.80e-22; pfam:RNA_pol_Rpb2_6 (PF00562) at aa 752-1127, E()=3.20e-180; pfam:RNA_pol_Rpb2_7 (PF04560) at aa 1129-1221, E()=4.60e-51; DNA-directed RNA polymerase II subunit, putative	complement(join(675544..675974,676017..676154,676217..676672,676726..676872,676904..677395,677435..677818,677854..677970,678000..678446,678505..678708,678773..679320,679353..679464,679560..679694,679732..679792))	Theileria annulata	3862959
TA07930	CDS	TA07930	NC_011098.1	680052	680765	D	Tap349h10.p1c.cand.124 - score = 17.74; SMART 3 transmembrane domains at aa 85-104, 152-169 and 205-227; 3 probable transmembrane helices predicted for TA07930 by TMHMM2.0 at aa 85-104, 152-169 and 205-227; uncharacterized protein	680052..680765	Theileria annulata	3862960
TA07935	CDS	TA07935	NC_011098.1	681002	682159	D	Tap349h10.p1c.cand.125 - score = 25.97; SMART 4 transmembrane domains at aa 39-61, 68-90, 175-197 and 204-226; 4 probable transmembrane helices predicted for TA07935 by TMHMM2.0 at aa 39-61, 68-90, 175-197 and 204-226; uncharacterized protein	join(681002..681036,681099..681202,681237..681417,681450..681567,681598..681676,681783..681947,682002..682159)	Theileria annulata	3862961
TA07940	CDS	TA07940	NC_011098.1	682685	684391	D	Tap349h10.p1c.cand.126 - score = 46.53; SMART pfam:Kelch (PF01344) at aa 21-66, E()=9.10e-05; 3 Kelch domains (SM00612) at aa 159-209, E()=9.10e-05; 210-259, E()=6.53e-01; 260-310, E()=2.43e+00; BTB (SM00225) at aa 379-505, E()=6.68e-17; uncharacterized protein	682685..684391	Theileria annulata	3862962
TA07945	CDS	TA07945	NC_011098.1	684699	688886	D	SMART pfam:Myosin_tail (PF01576) at aa 81-879, E()=5.80e-02; pfam:DUF164 (PF02591) at aa 437-661, E()=6.10e-02; pfam:CENP-B_N (PF04218) at aa 1197-1248, E()=9.30e-02; uncharacterized protein	join(684699..688325,688584..688886)	Theileria annulata	3862963
TA07950	CDS	TA07950	NC_011098.1	689085	691131	D	Tap349h10.p1c.cand.128 - score = 47.77; uncharacterized protein	join(689085..689178,689209..689497,689552..689704,689760..689922,689966..690061,690093..690403,690434..690690,690722..691131)	Theileria annulata	3862964
TA07955	CDS	TA07955	NC_011098.1	691184	691957	R	Tap349h10.p1c.C.cand.100 - score = 19.35; uncharacterized protein	complement(691184..691957)	Theileria annulata	3862965
TA07960	CDS	TA07960	NC_011098.1	692349	692819	D	SMART pfam:UCR_hinge (PF02320) at aa 27-98, E()=1.20e-04; ubiquinol-cytochrome c reductase complex, subunit, putative	join(692349..692495,692643..692819)	Theileria annulata	3862966
TA07965	CDS	TA07965	NC_011098.1	692994	695128	R	Tap349h10.p1c.C.cand.99 - score = 66.36; U4/U6-associated splicing factor, putative	complement(join(692994..693259,693348..693504,693547..693912,693947..694087,694131..694496,694529..694878,694919..694957,695002..695128))	Theileria annulata	3862967
TA07970	CDS	TA07970	NC_011098.1	695515	696518	D	SMART pfam:HORMA (PF02301) at aa 11-197, E()=8.20e-05; GPI-Anchor Signal predicted for TA07970 by DGPI v2.04 with cleavage site probability 0.36720002 near 297; uncharacterized protein	join(695515..695751,695800..695949,695978..696032,696157..696518)	Theileria annulata	3862968
TA07975	CDS	TA07975	NC_011098.1	696663	697391	R	SMART pfam:Gar1 (PF02301) at aa 23-131, E()=5.70e-37; snoRNP (nucleolar) protein, putative	complement(join(696663..696923,697009..697160,697211..697249,697319..697391))	Theileria annulata	3862969
TA07980	CDS	TA07980	NC_011098.1	697605	698530	D	Tap349h10.p1c.cand.130 - score = 23.30; SMART pfam:FtsJ (PF01728) at aa 35-216, E()=1.60e-62; ribosomal RNA methyltransferase (FtsJ homologue), putative	join(697605..697700,697733..697924,697968..698060,698093..698191,698265..698377,698410..698530)	Theileria annulata	3862970
TA07985	CDS	TA07985	NC_011098.1	698660	701659	R	Tap349h10.p1c.C.cand.97 - score = 13.33; SMART 23 transmembrane domains at aa 94-116, 120-142, 149-171, 181-200, 213-235, 264-286, 298-320, 324-346, 353-375, 385-407, 414-436, 462-484, 511-533, 548-567, 580-597, 607-629, 642-664, 674-696, 728-750, 754-776, 789-811, 821-843 and 967-989; 24 probable transmembrane helices predicted for TA07985 by TMHMM2.0 at aa 30-52, 94-116, 120-142, 149-171, 181-200, 213-235, 264-286, 298-320, 324-346, 353-375, 385-407, 414-436, 462-484, 511-533, 548-567, 580-597, 607-629, 642-664, 674-696, 728-750, 754-776, 789-811, 821-843 and 967-989; uncharacterized protein	complement(698660..701659)	Theileria annulata	3862971
TA07990	CDS	TA07990	NC_011098.1	702210	703643	R	Tap349h10.p1c.C.cand.96 - score = 27.71; uncharacterized protein	complement(702210..703643)	Theileria annulata	3862972
TA07995	CDS	TA07995	NC_011098.1	703933	709275	D	Tap349h10.p1c.cand.131 - score = 121.20; SMART pfam:DER1 (PF04511) at aa 870-1081, E()=4.50e-02; uncharacterized protein	703933..709275	Theileria annulata	3862973
TA08005	CDS	TA08005	NC_011098.1	709370	710404	D	uncharacterized protein	709370..710404	Theileria annulata	3862975
TA08010	CDS	TA08010	NC_011098.1	710519	712844	D	Tap349h10.p1c.cand.132 - score = 43.78; uncharacterized protein	join(710519..711835,711880..712369,712431..712727,712759..712844)	Theileria annulata	3862976
TA08015	CDS	TA08015	NC_011098.1	712905	714224	R	Tap349h10.p1c.C.cand.95 - score = 31.50; SMART RINGv (SM00744) at aa 209-272, E()=4.62e-18; FHA (SM00240) at aa 320-370, E()=7.50e-05; uncharacterized protein	complement(join(712905..713564,713628..714224))	Theileria annulata	3862977
TA08020	CDS	TA08020	NC_011098.1	715510	715982	D	SMART Sm (SM00651) at aa 8-73, E()=1.72e-10; snRNP protein, putative	join(715510..715605,715690..715770,715803..715982)	Theileria annulata	3862978
TA08025	CDS	TA08025	NC_011098.1	716381	719548	D	Tap349h10.p1c.cand.134 - score = 66.33; uncharacterized protein	716381..719548	Theileria annulata	3862979
TA08030	CDS	TA08030	NC_011098.1	719763	721282	D	Tap349h10.p1c.cand.135 - score = 58.85; microfibrillar-associated protein, putative	join(719763..719891,719961..720081,720145..720233,720263..720718,720750..720824,720857..721282)	Theileria annulata	3862980
TA08035	CDS	TA08035	NC_011098.1	721322	722685	R	Tap349h10.p1c.C.cand.94 - score = 35.59; uncharacterized protein	complement(join(721322..721471,721501..721611,721656..722000,722033..722147,722219..722349,722386..722535,722572..722685))	Theileria annulata	3862981
TA08040	CDS	TA08040	NC_011098.1	722878	724593	D	Tap349h10.p1c.cand.136 - score = 46.59; SMART 4 WD40 domains (SM00320) at aa 49-94, E()=3.84e+00; 149-194, E()=1.37e-06; 227-268, E()=3.30e+01; 271-308, E()=2.76e+00; uncharacterized protein	722878..724593	Theileria annulata	3862982
TA08045	CDS	TA08045	NC_011098.1	725155	728819	D	Tap349h10.p1c.cand.137 - score = 83.09; SMART IBN_NT (PF03820) at aa 25-91, E()=2.00e-03; RAN-binding protein, putative	join(725155..725709,725803..726571,726655..727131,727249..728819)	Theileria annulata	3862983
TA08050	CDS	TA08050	NC_011098.1	729003	732656	R	Tap349h10.p1c.C.cand.93 - score = 83.05; SMART DEXDc (SM0487) at aa 179-364, E()=2.90e-32; HELICc (SM00490) at aa 480-566, E()=1.82e-15; DEAD-family helicase, putative	complement(join(729003..729167,729197..729259,729290..729391,729457..729780,729838..730169,730210..730486,730538..730813,730879..731037,731078..731200,731268..732656))	Theileria annulata	3862984
TA08065	CDS	TA08065	NC_011098.1	732830	735201	R	Tap349h10.p1c.C.cand.92 - score = 46.47; SMART pfam:Peptidase_S9 (PF00326) at aa 548-627, E()=8.60e-07; peptidase, putative	complement(join(732830..733413,733467..735201))	Theileria annulata	3862987
TA08070	CDS	TA08070	NC_011098.1	735486	736596	D	Tap349h10.p1c.cand.138 - score = 30.88; SMART pfam:proteasome (PF00227) at aa 32-224, E()=7.50e-06; proteasome subunit (alpha type 6 homologue), putative	join(735486..735561,735595..735707,735770..735851,735948..736103,736161..736243,736276..736596)	Theileria annulata	3862988
TA08075	CDS	TA08075	NC_011098.1	736703	738126	R	Tap349h10.p1c.C.cand.91 - score = 71.18; SMART pfam:tRNA-synt_1b (PF00579) at aa 89-382, E()=8.90e-49; tyrosyl-tRNA synthetase, putative	complement(join(736703..736878,736909..737044,737076..737214,737244..737402,737440..737529,737564..737631,737686..738126))	Theileria annulata	3862989
TA08080	CDS	TA08080	NC_011098.1	738327	739484	R	Tap349h10.p1c.C.cand.91 - score = 71.18; SMART VWA (SM00237) at aa 4-171, E()=4.11e-01; pfam:KNOX2 (PF03791) at aa 206-255, E()=5.30e-02; uncharacterized protein	complement(join(738327..738694,738775..738987,739037..739100,739131..739484))	Theileria annulata	3862990
TA08085	CDS	TA08085	NC_011098.1	739953	742798	D	SMART pfam:XRN_N (PF03159) at aa 1-269, E()=3.70e-116; exoribonuclease (XRN family member), putative	join(739953..740165,740198..742798)	Theileria annulata	3862991
TA08090	CDS	TA08090	NC_011098.1	743525	748699	D	Tap349h10.p1c.cand.141 - score = 123.43; SMART pfam:Cnd1 (PF04594) at aa 361-481, E()=2.10e-02; pfam:SEA (PF01390) at aa 320-439, E()=5.10e-02; pfam:DUF577 (PF04510) at aa 1411-1566, E()=3.20e-02; condensin subunit, putative	743525..748699	Theileria annulata	3862992
TA08095	CDS	TA08095	NC_011098.1	748873	749559	D	Tap349h10.p1c.cand.142 - score = 22.55; uncharacterized protein	join(748873..748959,748991..749263,749338..749559)	Theileria annulata	3862993
TA08100	CDS	TA08100	NC_011098.1	749645	751441	R	Tap349h10.p1c.C.cand.90 - score = 45.39; uncharacterized protein	complement(749645..751441)	Theileria annulata	3862994
TA08105	CDS	TA08105	NC_011098.1	752049	753874	D	Tap349h10.p1c.cand.143 - score = 41.76; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA08105 by SignalP 2.0 HMM (Signal peptide probability 0.994, signal anchor probability 0.000) with cleavage site probability 0.607 between residues 23 and 24; uncharacterized protein	join(752049..752642,752731..753723,753773..753874)	Theileria annulata	3862995
TA08110	CDS	TA08110	NC_011098.1	754005	755393	R	Tap349h10.p1c.C.cand.89 - score = 24.64; SMART 1 transmembrane domain at aa 37-59; TBC (SM00164) at aa 109-346, E()=1.56e-25; 1 probable transmembrane helix predicted for TA08110 by TMHMM2.0 at aa 37-59; Signal anchor predicted for TA08110 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.954) with cleavage site probability 0.000 between residues 53 and 54; GPI-Anchor Signal predicted for TA08110 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	complement(join(754005..754406,754460..754566,754622..754679,754708..754833,754911..754964,754995..755393))	Theileria annulata	3862996
TA08115	CDS	TA08115	NC_011098.1	755616	756536	D	Tap349h10.p1c.cand.144 - score = 26.99; uncharacterized protein	755616..756536	Theileria annulata	3862997
TA08120	CDS	TA08120	NC_011098.1	756673	761808	R	Tap349h10.p1c.C.cand.88 - score = 88.44; SMART 4 WD40 domains (SM00320) at aa 8-47, E()+8.88e+00; 145-183, E()=1.12e-02; 1447-1482, E()=1.60e+00; 1485-1525, E()=8.22e+01; uncharacterized protein	complement(join(756673..756831,756862..756947,757030..757202,757270..757419,757484..757629,757688..757983,758053..758140,758173..761808))	Theileria annulata	3862998
TA08125	CDS	TA08125	NC_011098.1	762653	763268	D	Tap349h10.p1c.cand.145 - score = 22.82; SMART pfam:CBFD_NFYB_HMF (PF00808) at aa 44-106, E()=2.30e-02; uncharacterized protein	join(762653..762709,762745..762959,762992..763268)	Theileria annulata	3862999
TA08130	CDS	TA08130	NC_011098.1	763295	764414	R	Tap349h10.p1c.C.cand.87 - score = 22.46; SMART AAA (SM00382) at aa 39-176, E()=1.88e-12; replication factor C subunit, putative	complement(join(763295..764190,764267..764414))	Theileria annulata	3863000
TA08135	CDS	TA08135	NC_011098.1	764749	766227	D	Tap349h10.p1c.cand.146 - score = 34.68; SMART AAA (SM00382) at aa 286-419, E()=9.30e-03; uncharacterized protein	join(764749..764782,764848..765008,765058..765159,765187..766227)	Theileria annulata	3863001
TA08140	CDS	TA08140	NC_011098.1	766278	767561	D	Tap349h10.p1c.cand.147 - score = 30.46; uncharacterized protein	766278..767561	Theileria annulata	3863002
TA08145	CDS	TA08145	NC_011098.1	767680	768699	R	Tap349h10.p1c.C.cand.86 - score = 34.95; SMART pfam:gpdh (PF00044) at aa 2-152, E()=9.70e-77; pfam:gpdh_C (PF02800) at aa 153-316, E()=6.10e-116; glyceraldehyde-3-phosphate dehydrogenase, putative	complement(767680..768699)	Theileria annulata	3863003
TA08150	CDS	TA08150	NC_011098.1	769309	770610	R	Tap349h10.p1c.C.cand.85 - score = 27.61; SMART pfam:Cytochrome_C1 (PF02167) at aa 158-383, E()=1.70e-109; 1 probable transmembrane helix predicted for TA08150 by TMHMM2.0 at aa 360-379; cytochrome C1 precursor, putative	complement(join(769309..770424,770536..770610))	Theileria annulata	3863004
TA08155	CDS	TA08155	NC_011098.1	771304	772089	D	Tap349h10.p1c.cand.148 - score = 29.10; SMART ZnF_U1 (SM00451) at aa 93-127, E()=6.72e-10; ZnF_C2H2 (SM00355) at aa 96-120, E()=2.17e+01; uncharacterized protein	771304..772089	Theileria annulata	3863005
TA08160	CDS	TA08160	NC_011098.1	772163	773392	R	Tap349h10.p1c.C.cand.84 - score = 20.65; SMART pfam:Syntaxin (PF00804) at aa 60-218, E()=1.90e-02; t_SNARE (SM00397) at aa 225-284, E()=6.08e-01; syntaxin, putative	complement(join(772163..772357,772417..772494,772528..772683,772758..773155,773254..773392))	Theileria annulata	3863006
TA08170	CDS	TA08170	NC_011098.1	773585	774283	R	SMART pfam:Ribosomal_L13 (PF005822) at aa 1-107, E()=9.80e-32; 60S ribosomal protein L13, putative	complement(join(773585..773761,773833..774110,774175..774283))	Theileria annulata	3863008
TA08175	CDS	TA08175	NC_011098.1	774937	778796	D	Tap349h10.p1c.cand.149 - score = 50.44; SMART PI3Kc (SM00146) at aa 912-1191, E()=1.14e-59; phosphatidylinositol 4-kinase, putative	join(774937..777045,777108..777259,777312..778188,778310..778620,778661..778796)	Theileria annulata	3863009
TA08180	CDS	TA08180	NC_011098.1	778843	781210	R	Tap349h10.p1c.C.cand.82 - score = 46.80; SMART pfam:N_Arg (PF03485) at aa 11-99, E()=3.30e-02; pfam:tRNA-synt_1d (PF00750) at aa 121-463, E()=3.90e-126; GPI-Anchor Signal predicted for TA08180 by DGPI v2.04, no cleavage site predicted; arginyl-tRNA synthetase, putative	complement(join(778843..779014,779107..779536,779616..779786,779825..780439,780507..780598,780662..780929,781019..781148,781190..781210))	Theileria annulata	3863010
TA08185	CDS	TA08185	NC_011098.1	781527	782290	R	Tap349h10.p1c.C.cand.81 - score = 13.53; uncharacterized protein	complement(join(781527..781678,781741..781827,781970..781985,782018..782290))	Theileria annulata	3863011
TA08190	CDS	TA08190	NC_011098.1	782664	783197	D	Tap349h10.p1c.cand.150 - score = 9.60; uncharacterized protein	782664..783197	Theileria annulata	3863012
TA08195	CDS	TA08195	NC_011098.1	783228	783599	D	Tap349h10.p1c.cand.151 - score = 9.00; SMART pfam:Ribosomal_L14 (PF00238) at aa 9-123, E()=5.40e-17; 50S ribosomal protein L14, putative	783228..783599	Theileria annulata	3863013
TA08200	CDS	TA08200	NC_011098.1	783737	784556	R	Tap349h10.p1c.C.cand.80 - score = 19.30; SMART RRM (SM00360) at aa 8-81, E()=1.35e-20; RNA-binding protein, putative	complement(join(783737..784166,784249..784556))	Theileria annulata	3863014
TA08205	CDS	TA08205	NC_011098.1	784928	785488	R	Tap349h10.p1c.C.cand.79 - score = 10.96; SMART pfam:Ribosomal_L22e (PF01776) at aa 8-122, E()=9.60e-54; 60S ribosomal protein L22, putative	complement(join(784928..785047,785156..785287,785372..785488))	Theileria annulata	3863015
TA08210	CDS	TA08210	NC_011098.1	786163	787855	D	Tap349h10.p1c.cand.152 - score = 34.70; SMART PINT (SM00088) at aa 330-413, E()=7.57e-14; 26S proteasome regulatory subunit, putative	join(786163..786266,786364..786446,786511..786716,786787..787072,787101..787195,787264..787604,787693..787855)	Theileria annulata	3863016
TA08215	CDS	TA08215	NC_011098.1	788013	789495	R	Tap349h10.p1c.C.cand.78 - score = 37.63; SMART PINT (SM00088) at aa 326-415, E()=4.66e-14; uncharacterized protein	complement(join(788013..788559,788631..788794,788834..789127,789196..789495))	Theileria annulata	3863017
TA08225	CDS	TA08225	NC_011098.1	789871	790881	R	Tap349h10.p1c.C.cand.77 - score = 20.87; SMART pfam:NOT (PF04153) at aa 138-261, E()=1.90e-06; uncharacterized protein	complement(join(789871..789992,790103..790356,790436..790881))	Theileria annulata	3863019
TA08230	CDS	TA08230	NC_011098.1	791470	795802	R	Tap349h10.p1c.C.cand.76 - score = 89.89; SMART ofam:Sec7 (PF01389) at aa 537-690, E()=6.20e-02; uncharacterized protein	complement(join(791470..792307,792393..795360,795408..795480,795566..795646,795749..795802))	Theileria annulata	3863020
TA08235	CDS	TA08235	NC_011098.1	795996	797474	R	Tap349h10.p1c.C.cand.75 - score = 38.04; SMART 1 transmembrane domain at aa 344-366; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA08235 by TMHMM2.0 at aa 19-36 and 344-366; Signal anchor predicted for TA08235 by SignalP 2.0 HMM (Signal peptide probability 0.043, signal anchor probability 0.826) with cleavage site probability 0.022 between residues 35 and 36; uncharacterized protein	complement(join(795996..796059,796134..796539,796608..797257,797434..797474))	Theileria annulata	3863021
TA08240	CDS	TA08240	NC_011098.1	797787	799937	R	Tap349h10.p1c.C.cand.74 - score = 54.33; SMART 5 RRM domains (SM00360) at aa 11-95, E()=1.28e-03; 207-293, E()=8.72e-15; 412-479, E()=4.82e-08; 535-612, E()=1.62e-09; 637-709, E()=3.01e-18; uncharacterized protein	complement(797787..799937)	Theileria annulata	3863022
TA08245	CDS	TA08245	NC_011098.1	800168	801575	D	Tap349h10.p1c.cand.154 - score = 13.48; SMART pfam:TP6A_N (PF04406) at aa 19-92, E()=8.50e-05; uncharacterized protein	join(800168..800230,800336..800644,800832..801129,801212..801419,801449..801575)	Theileria annulata	3863023
TA08250	CDS	TA08250	NC_011098.1	801620	802123	D	Tap349h10.p1c.cand.154 - score = 13.48; uncharacterized protein	801620..802123	Theileria annulata	3863024
TA08255	CDS	TA08255	NC_011098.1	802344	804665	R	Tap349h10.p1c.C.cand.73 - score = 49.97; SMART DnaJ (SM00271) at aa 137-215, E()=7.52e-09; SANT (SM00717) at aa 521-573, E()=3.91e-07; DNA-binding chaperone, putative	complement(join(802344..803115,803230..803322,803354..803443,803478..803732,803790..803913,803953..804450,804530..804665))	Theileria annulata	3863025
TA08260	CDS	TA08260	NC_011098.1	804920	805570	R	Tap349h10.p1c.C.cand.72 - score = 9.47; Signal peptide predicted for TA08260 by SignalP 2.0 HMM (Signal peptide probability 0.982, signal anchor probability 0.000) with cleavage site probability 0.312 between residues 18 and 19; uncharacterized protein	complement(804920..805570)	Theileria annulata	3863026
TA08265	CDS	TA08265	NC_011098.1	805998	806321	R	Tap349h10.p1c.C.cand.71 - score = 11.93; SMART H2B (SM00427) at aa 8-104, E()=4.65e-63; histone H2B, putative	complement(805998..806321)	Theileria annulata	3863027
TA08270	CDS	TA08270	NC_011098.1	807090	809401	D	Tap349h10.p1c.cand.155 - score = 41.96; uncharacterized protein	join(807090..807157,807211..807228,807296..807797,807881..809401)	Theileria annulata	3863028
TA08285	CDS	TA08285	NC_011098.1	809567	811396	R	Tap349h10.p1c.C.cand.70 - score = 30.38; SMART 9 transmembrane domains at aa 20-42, 239-261, 271-293, 334-356, 376-398, 411-433, 478-500, 521-543 and 553-575; 9 probable transmembrane helices predicted for TA08285 by TMHMM2.0 at aa 20-42, 239-261, 271-293, 334-356, 376-398, 411-433, 478-500, 521-543 and 553-575; Tpr-related protein family member, putative	complement(809567..811396)	Theileria annulata	3863031
TA08290	CDS	TA08290	NC_011098.1	811648	813898	R	Tap349h10.p1c.C.cand.68 - score = 13.31; SfiI-subtelomeric fragment related protein family member, putative	complement(join(811648..812960,813088..813141,813223..813898))	Theileria annulata	3863032
TA08295	CDS	TA08295	NC_011098.1	814059	817859	R	Tap349h10.p1c.C.cand.67 - score = 80.92; SMART pfam:SMC_N (PF02463) at aa 1-172, E()=1.10e-55; pfam:filament (PF00038) at aa 699-975, E()=1.00e-01; pfam:SMC_C (PF02483) at aa 1048-1246, E()+3.60e-27; pfam:ABC_tran (PF00005) at aa 1074-1233, E()=3.00e-03; chromosome segregation protein (SMC homologue), putative	complement(814059..817859)	Theileria annulata	3863033
TA08300	CDS	TA08300	NC_011098.1	818405	819797	D	Tap349h10.p1c.cand.156 - score = 17.27; SMART PP2Cc (SM00332) at aa 21-321, E()=2.65e-45; serine/threonine protein phosphatase 2C, putative	join(818405..818525,818564..818916,819001..819108,819205..819333,819409..819568,819670..819797)	Theileria annulata	3863034
TA08302	CDS	TA08302	NC_011098.1	821181	821870	D	uncharacterized protein	join(821181..821369,821400..821870)	Theileria annulata	3863035
TA08305	CDS	TA08305	NC_011098.1	822078	822824	D	Tap349h10.p1c.cand.159 - score = 12.07; SMART 2 transmembrane domains at aa 88-110 and 139-158; 2 probable transmembrane helices predicted for TA08305 by TMHMM2.0 at aa 88-110 and 139-158; uncharacterized protein	822078..822824	Theileria annulata	3863036
TA08310	CDS	TA08310	NC_011098.1	822980	825298	D	Tap349h10.p1c.cand.160 - score = 36.12; uncharacterized protein	822980..825298	Theileria annulata	3863037
TA08315	CDS	TA08315	NC_011098.1	825435	826436	R	uncharacterized protein	complement(join(825435..825924,826029..826204,826236..826436))	Theileria annulata	3863038
TA08320	CDS	TA08320	NC_011098.1	826641	829886	D	SMART pfam:lactamase_B (PF00753) at aa 422-591, E()=6.00e-04; uncharacterized protein	join(826641..826750,826897..827091,827209..827425,827513..827656,827687..827907,827937..828043,828072..828130,828160..828201,828233..828440,828581..828674,828723..828846,828956..829075,829193..829328,829604..829617,829692..829886)	Theileria annulata	3863039
TA08325	CDS	TA08325	NC_011098.1	831091	835764	D	Actually it seemed that there is a deletion of the internal part of the Q8IKI3 protein; 12 probable transmembrane helices predicted for TA08325 by TMHMM2.0 at aa 19-38, 48-67, 158-180, 195-217, 238-260, 275-294, 307-329, 339-361, 766-788, 792-814, 1009-1031 and 1057-1079; Signal anchor predicted for TA08325 by SignalP 2.0 HMM (Signal peptide probability 0.130, signal anchor probability 0.844) with cleavage site probability 0.077 between residues 38 and 39; GPI-Anchor Signal predicted for TA08325 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	join(831091..831211,831242..831368,831463..831631,831994..832231,832273..832377,832407..832520,832589..832883,833015..833343,833499..833770,833816..833966,834026..834519,834607..834698,834746..834863,834896..834996,835096..835294,835418..835593,835623..835764)	Theileria annulata	3863040
TA08330	CDS	TA08330	NC_011098.1	835935	838625	R	SMART 2 transmembrane domains at aa 132-154 and 166-188; 2 probable transmembrane helices predicted for TA08330 by TMHMM2.0 at aa 132-154 and 166-188; uncharacterized protein	complement(join(835935..836126,836200..836322,836486..836826,836953..837780,837812..837884,837967..838075,838142..838217,838316..838625))	Theileria annulata	3863041
TA08340	CDS	TA08340	NC_011098.1	839488	840171	D	Tap349h10.p1c.cand.164 - score = 7.18; SMART KH (SM00322) at aa 43-107, E()=2.61e-01; 40S ribosomal protein S3, putative	join(839488..839502,839536..840171)	Theileria annulata	3863043
TA08345	CDS	TA08345	NC_011098.1	840299	841619	R	Tap349h10.p1c.C.cand.63 - score = 16.71; uncharacterized protein	complement(join(840299..840339,840449..840563,840679..840695,840725..840849,840879..840980,841038..841126,841185..841331,841432..841483,841513..841619))	Theileria annulata	3863044
TA08350	CDS	TA08350	NC_011098.1	842100	845654	D	SMART 2 pfam:Kelch domains (PF01344) at aa 16-66, E()=2.00e-03 and 141-188, E()=1.30e-03; 1 transmembrane domain at aa 101-118; PP2Ac (SM00156) at aa 450-755, E()=5.90e-99; 1 probable transmembrane helix predicted for TA08350 by TMHMM2.0 at aa 101-118; serine/threonine phosphatase, putative	join(842100..842214,842358..842587,842633..842772,842805..842925,843028..843199,843236..843268,843295..843358,843452..843518,843553..843661,843837..843982,844088..844288,844376..844433,844463..844953,845042..845211,845242..845309,845421..845538,845570..845654)	Theileria annulata	3863045
TA08355	CDS	TA08355	NC_011098.1	845756	849755	D	Tap349h10.p1c.cand.166 - score = 63.70; SMART 5 pfam:PC_rep (PF01851) at aa 454-488, E()=9.70e-03; 491-525, E()=8.40e-04; 526-560, E()=6.60e-05; 632-664, E()=8.00e-02; 666-700, E()=8.20e-02; 26S proteasome regulatory subunit, putative	join(845756..845940,846030..846391,846430..846989,847084..847257,847319..847415,847509..847649,847734..847823,847855..847976,848007..848105,848221..848530,848560..848723,848759..848906,848959..849211,849335..849755)	Theileria annulata	3863046
TA08360	CDS	TA08360	NC_011098.1	850041	851333	R	Tap349h10.p1c.C.cand.62 - score = 27.96; Signal peptide predicted for TA08360 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.002) with cleavage site probability 0.900 between residues 18 and 19; uncharacterized protein	complement(850041..851333)	Theileria annulata	3863047
TA08365	CDS	TA08365	NC_011098.1	851755	854220	R	Tap349h10.p1c.C.cand.61 - score = 41.73; Signal peptide predicted for TA08365 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.000) with cleavage site probability 0.880 between residues 16 and 17; uncharacterized protein	complement(851755..854220)	Theileria annulata	3863048
TA08370	CDS	TA08370	NC_011098.1	854690	857293	R	Tap349h10.p1c.C.cand.60 - score = 51.36; Signal peptide predicted for TA08370 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.868 between residues 21 and 22; uncharacterized protein	complement(854690..857293)	Theileria annulata	3863049
TA08375	CDS	TA08375	NC_011098.1	857816	859152	R	Tap349h10.p1c.C.cand.59 - score = 32.00; uncharacterized protein	complement(join(857816..858727,858835..859152))	Theileria annulata	3863050
TA08380	CDS	TA08380	NC_011098.1	860638	861411	D	Tap349h10.p1c.cand.167 - score = 18.13; SMART PUA (SM00359) at aa 105-177, E()=6.94e-05; 60S ribosome subunit biogenesis protein (Nip7 homologue), putative	join(860638..860693,860749..860865,860909..860954,861049..861198,861232..861411)	Theileria annulata	3863051
TA08385	CDS	TA08385	NC_011098.1	861552	862579	D	Tap349h10.p1c.cand.168 - score = 49.53; uncharacterized protein	join(861552..862358,862390..862454,862501..862579)	Theileria annulata	3863052
TA08395	CDS	TA08395	NC_011098.1	862616	865691	D	uncharacterized protein	join(862616..863131,863163..863372,863421..863473,863634..864405,864438..864529,864561..864606,864636..865691)	Theileria annulata	3863054
TA08400	CDS	TA08400	NC_011098.1	865780	867244	R	Tap349h10.p1c.C.cand.58 - score = 21.36; uncharacterized protein	complement(join(865780..866215,866256..867244))	Theileria annulata	3863055
TA08405	CDS	TA08405	NC_011098.1	867537	868911	D	Tap349h10.p1c.cand.170 - score = 174.08; uncharacterized protein	join(867537..867679,867711..867870,867906..868025,868054..868120,868162..868244,868276..868410,868471..868911)	Theileria annulata	3863056
TA08410	CDS	TA08410	NC_011098.1	869108	873240	D	Tap349h10.p1c.cand.170 - score = 174.08; SMART PH (SM00223) at aa 25-185, E()=8.93e-02; DysFC (SM00694) at aa 953-986, E()=2.16e-01; 4 transmembrane domains at aa 572-589, 594-613, 618-640 and 838-860; 4 probable transmembrane helices predicted for TA08410 by TMHMM2.0 at aa 572-589, 594-613, 618-640 and 838-860; uncharacterized protein	join(869108..869623,869656..873240)	Theileria annulata	3863057
TA08415	CDS	TA08415	NC_011098.1	873363	874679	D	Tap349h10.p1c.cand.170 - score = 174.08; 2 probable transmembrane helices predicted for TA08415 by TMHMM2.0 at aa 5-27 and 298-329; Signal peptide predicted for TA08415 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.000) with cleavage site probability 0.454 between residues 33 and 34; uncharacterized protein	873363..874679	Theileria annulata	3863058
TA08420	CDS	TA08420	NC_011098.1	874711	875997	D	Tap349h10.p1c.cand.171 - score = 39.84; SMART pfam:vATP-synt_AC39 (PF01992) at aa 12-377, E()=2.10e-60; vacuolar ATP synthase, subunit, putative	join(874711..874949,874983..875036,875076..875263,875295..875722,875755..875997)	Theileria annulata	3863059
TA08425	CDS	TA08425	NC_011098.1	876415	879096	D	Tap349h10.p1c.cand.172 - score = 66.70; SMART pfam:DUF529 (PF404385) at aa 268-401, E()=3.40e-02; 1 transmembrane domain at aa 875-892; 1 probable transmembrane helix predicted for TA08425 by TMHMM2.0 at aa 875-892; Signal peptide predicted for TA08425 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.762 between residues 19 and 20; GPI-Anchor Signal predicted for TA08425 by DGPI v2.04 with cleavage site probability 1.131 near 873; Theileria parva microneme-rhoptry antigen, putative	876415..879096	Theileria annulata	3863060
TA08430	CDS	TA08430	NC_011098.1	879397	881282	R	uncharacterized protein	complement(join(879397..879747,879810..880088,880117..880197,880227..880287,880317..880914,880949..881282))	Theileria annulata	3863061
TA08435	CDS	TA08435	NC_011098.1	881352	883381	D	Tap349h10.p1c.cand.173 - score = 45.37; SMART PINT (SM00088) at aa 356-446, E()=9.99e-14; uncharacterized protein	join(881352..881846,881934..882011,882082..882144,882171..882294,882443..882552,882583..882696,882729..882890,882926..883051,883126..883218,883289..883381)	Theileria annulata	3863062
TA08440	CDS	TA08440	NC_011098.1	883613	885844	D	Tap349h10.p1c.cand.174 - score = 76.32; uncharacterized protein	883613..885844	Theileria annulata	3863063
TA08445	CDS	TA08445	NC_011098.1	885936	886949	R	Tap349h10.p1c.C.cand.55 - score = 16.85; Signal peptide predicted for TA08445 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.040) with cleavage site probability 0.357 between residues 26 and 27; uncharacterized protein	complement(885936..886949)	Theileria annulata	3863064
TA08450	CDS	TA08450	NC_011098.1	887273	888748	D	Tap349h10.p1c.cand.175 - score = 39.11; SMART pfam:ATP-synt_ab_N (PF02874) at aa 34-100, E()=1.50e-12; pfam:ATP-synT_ab (PF00006) at aa 209-388, E()=2.10e-84; pfam:ATP-synt_ab_C (PF00306) at aa 395-488, E()=2.90e-21; vacuolar ATP synthase, subunit beta, putative	887273..888748	Theileria annulata	3863065
TA08455	CDS	TA08455	NC_011098.1	889037	890308	R	Tap349h10.p1c.C.cand.54 - score = 28.03; uncharacterized protein	complement(join(889037..889223,889323..890308))	Theileria annulata	3863066
TA08460	CDS	TA08460	NC_011098.1	890775	892304	D	Tap349h10.p1c.cand.176 - score = 39.18; uncharacterized protein	join(890775..891348,891384..891517,891551..891599,891631..891650,891706..892092,892134..892304)	Theileria annulata	3863067
TA08465	CDS	TA08465	NC_011098.1	892407	893634	R	Tap349h10.p1c.C.cand.53 - score = 25.72; SMART JAB_MPN (SM00232) at aa 32-175, E()=1.52e-04; uncharacterized protein	complement(join(892407..892619,892671..892759,892791..892847,892879..892978,893007..893166,893232..893317,893377..893634))	Theileria annulata	3863068
TA08470	CDS	TA08470	NC_011098.1	893793	896532	R	Tap349h10.p1c.C.cand.52 - score = 42.81; SMART STYKc (SM00221) at aa 101-396, E()=8.39e-07; 113-45, E()=1.01e-19; pfam:cyclin (PF00134) at aa 500-645, E()=1.30e-02; cyclin-dependent serimne/threonine kinase (Cdk)-related protein, putative	complement(join(893793..894164,894201..894779,894813..895227,895367..896532))	Theileria annulata	3863069
TA08475	CDS	TA08475	NC_011098.1	897604	898356	R	Tap349h10.p1c.C.cand.51 - score = 15.46; SMART 3 domains ZnF_C3H1 (SM00356) at aa 69-95, E()=1.56e-02; 101-128, E()=1.91e+00; 130-154, E()=9.02e-01; uncharacterized protein	complement(897604..898356)	Theileria annulata	3863070
TA08480	CDS	TA08480	NC_011098.1	899367	902285	D	Tap349h10.p1c.cand.177 - score = 44.47; SMART 7 transmembrane domains at aa 180-202, 217-239, 276-298, 379-401, 414-436, 521-540 and 553-575; 7 probable transmembrane helices predicted for TA08480 by TMHMM2.0 at aa 180-202, 217-239, 276-298, 379-401, 414-436, 521-540 and 553-575; uncharacterized protein	join(899367..900128,900184..900626,900681..900789,900838..900975,901055..901660,901736..901855,901894..901977,902124..902285)	Theileria annulata	3863071
TA08485	CDS	TA08485	NC_011098.1	902636	903947	D	Tap349h10.p1c.cand.178 - score = 24.33; SMART 1 transmembrane domain at aa 20-42; 1 probable transmembrane helix predicted for TA08485 by TMHMM2.0 at aa 20-42; Signal anchor predicted for TA08485 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.918) with cleavage site probability 0.000 between residues 41 and 42; uncharacterized protein	join(902636..902918,902976..903497,903550..903947)	Theileria annulata	3863072
TA08490	CDS	TA08490	NC_011098.1	904130	905911	D	Tap349h10.p1c.cand.179 - score = 32.38; SMART pfam:Fumble (PF03630) at aa 144-503, E()1.10e-10; 1 probable transmembrane helix predicted for TA08490 by TMHMM2.0 at aa 377-396; pantothenate kinase, putative	join(904130..904849,904905..905120,905161..905217,905259..905310,905344..905511,905601..905911)	Theileria annulata	3863073
TA08500	CDS	TA08500	NC_011098.1	906415	906864	D	uncharacterized protein	join(906415..906496,906511..906689,906727..906864)	Theileria annulata	3863075
TA08505	CDS	TA08505	NC_011098.1	907013	907411	D	Tap349h10.p1c.cand.180 - score = 9.95; uncharacterized protein	907013..907411	Theileria annulata	3863076
TA08510	CDS	TA08510	NC_011098.1	907647	907868	D	Tap349h10.p1c.cand.181 - score = 7.25; uncharacterized protein	907647..907868	Theileria annulata	3863077
TA08515	CDS	TA08515	NC_011098.1	909310	912906	D	Tap349h10.p1c.cand.183 - score = 71.00; SMART TBC (SM00164) at aa 373-764, E()=8.83e-03; TLDc (SM00584) at aa 830-1020, E()=8.42e-12; 2 probable transmembrane helices predicted for TA08515 by TMHMM2.0 at aa 632-654 and 679-696; uncharacterized protein	join(909310..909435,909542..909636,909748..909859,909891..909936,909993..910445,910514..911447,911498..911624,911674..912336,912400..912906)	Theileria annulata	3863116
TA08520	CDS	TA08520	NC_011098.1	912968	914746	R	Tap349h10.p1c.C.cand.50 - score = 24.98; SMART 9 transmembrane domains at aa 66-88, 95-117, 121-143, 156-178, 198-220, 255-277, 367-389, 396-418 and 473-495; 10 probable transmembrane helices predicted for TA08520 by TMHMM2.0 at aa 21-43, 66-88, 95-117, 121-143, 156-178, 198-220, 255-277, 367-389, 396-418 and 473-495; uncharacterized protein	complement(join(912968..913812,913930..914746))	Theileria annulata	3863117
TA08525	CDS	TA08525	NC_011098.1	915061	916094	R	Tap349h10.p1c.C.cand.49 - score = 29.00; uncharacterized protein	complement(join(915061..915199,915265..915566,915657..916094))	Theileria annulata	3863118
TA08530	CDS	TA08530	NC_011098.1	916925	918410	D	Tap349h10.p1c.cand.184 - score = 29.91; SMART pfam:biotin_lipoyl (PF00364) at aa 42-115, E()=1.20e-22; pfam:2-oxoacid_dh (PF00198) at aa 168-420, E()=1.90e-65; 2-oxoglutarate dehydrogenase complex subunit, putative	join(916925..917078,917161..917450,917534..917599,917652..918410)	Theileria annulata	3863119
TA08535	CDS	TA08535	NC_011098.1	918637	920463	R	Tap349h10.p1c.C.cand.48 - score = 64.87; SMART 9 transmembrane domains at aa 253-275, 282-304, 309-331, 344-366, 399-421, 434-453, 473-495, 515-534, and 544-566; 9 probable transmembrane helices predicted for TA08535 by TMHMM2.0 at aa 253-275, 282-304, 309-331, 344-366, 399-421, 434-453, 473-495, 515-534 and 544-566; Tpr-related protein family member, putative	complement(918637..920463)	Theileria annulata	3863120
TA08540	CDS	TA08540	NC_011098.1	920643	923177	R	Tap349h10.p1c.C.cand.48 - score = 64.87; SMART 11 transmembrane domains at aa 20-42, 498-520, 527-549, 564-581, 590-612, 632-654, 667-686, 713-735, 755-777, 787-806 and 826-843; 11 probable transmembrane helices predicted for TA08540 by TMHMM2.0 at aa 20-42, 498-520, 527-549, 564-581, 590-612, 632-654, 667-686, 713-735, 755-777, 787-806 and 826-843; Tpr-related protein family member, putative	complement(920643..923177)	Theileria annulata	3863121
TA08545	CDS	TA08545	NC_011098.1	923320	925542	R	Tap349h10.p1c.C.cand.47 - score = 39.91; SMART pfam:Spc97_Spc98 (PF04120) at aa 42-589, E()=2.40e-87; spindle pole body/centrosome component, putative	complement(join(923320..925232,925269..925542))	Theileria annulata	3863122
TA08560	CDS	TA08560	NC_011098.1	925694	928081	R	Tap349h10.p1c.C.cand.46 - score = 36.13; SMART 5 ANK domains (SM00248) at aa 84-113, E()=3.65e-03; 118-148, E()=5.58e-+01; 153-189, E()=7.75e+02; 193-222, E()=9.13e-04; 226-256, E()=2.15e+00; ZnF_NFX (SM00438) at aa 505-524, E()=0.00e+00; 4 transmembrane domains at aa 305-327, 337-359, 545-564 and 579-601; 4 probable transmembrane helices predicted for TA08560 by TMHMM2.0 at aa 305-327, 337-359, 545-564 and 579-601; uncharacterized protein	complement(join(925694..926105,926202..926627,926687..926756,926812..927307,927405..927827,927926..928081))	Theileria annulata	3863125
TA08565	CDS	TA08565	NC_011098.1	928831	930951	D	Tap349h10.p1c.cand.185 - score = 40.53; SMART pfam:lipin_N (PF04571) at aa 6-114, E()=3.20e-18; uncharacterized protein	join(928831..928963,929025..929246,929329..929619,929679..930035,930100..930644,930715..930951)	Theileria annulata	3863126
TA08570	CDS	TA08570	NC_011098.1	931092	931635	R	Tap349h10.p1c.C.cand.45 - score = 17.05; SMART pfam:RNA_pol_Rpb6 (PF01192) at aa 61-135, E()=8.50e-15 (PF01192); RNA polymerase common subunit (Rpb6 homologue), putative	complement(join(931092..931400,931483..931635))	Theileria annulata	3863127
TA08575	CDS	TA08575	NC_011098.1	931779	932637	R	Tap349h10.p1c.C.cand.44 - score = 12.81; SMART pfam:MSP_domain (PF00635) at aa 4-118, E()=1.00e-21; 1 probable transmembrane helix predicted for TA08575 by TMHMM2.0 at aa 203-222; vesicle-associated membrane protein, putative	complement(join(931779..931990,932178..932637))	Theileria annulata	3863128
TA08580	CDS	TA08580	NC_011098.1	933144	935199	R	Tap349h10.p1c.C.cand.43 - score = 44.26; uncharacterized protein	complement(join(933144..934037,934109..934191,934235..934395,934448..934783,934937..935199))	Theileria annulata	3863129
TA08585	CDS	TA08585	NC_011098.1	936096	938412	R	Tap349h10.p1c.C.cand.42 - score = 41.48; uncharacterized protein	complement(join(936096..936402,936454..936725,936758..936837,936872..937000,937032..937107,937175..937243,937301..937436,937507..937616,937654..937753,937783..938022,938083..938180,938314..938412))	Theileria annulata	3863130
TA08590	CDS	TA08590	NC_011098.1	938350	939577	D	Tap349h10.p1c.cand.186 - score = 21.58; SMART pfam:TIM (PF00121) at aa 84-329, E()=7.40e-118; triosephosphate isomerase, putative	join(938350..938600,938641..938744,938855..939303,939392..939577)	Theileria annulata	3863131
TA08595	CDS	TA08595	NC_011098.1	939839	941149	D	Tap349h10.p1c.cand.187 - score = 32.60; SMART pfam:zf-CCCH (PF00642) at aa 175-200, E()=8.60e-02; pfam:rrm (PF00076) at aa 241-316, E()=3.20e-02; pre-mRNA splicing complex subunit (Spcwf2 homologue), putative	join(939839..939887,939975..941149)	Theileria annulata	3863132
TA08600	CDS	TA08600	NC_011098.1	941261	941735	R	Tap349h10.p1c.C.cand.41 - score = 12.34; uncharacterized protein	complement(join(941261..941474,941530..941735))	Theileria annulata	3863133
TA08605	CDS	TA08605	NC_011098.1	941978	945536	D	uncharacterized protein	join(941978..942223,942335..942634,942698..942785,942839..942996,943031..943171,943209..944993,945058..945200,945232..945328,945360..945536)	Theileria annulata	3863134
TA08615	CDS	TA08615	NC_011098.1	945675	946218	D	Tap349h10.p1c.cand.189 - score = 14.54; SMART pfam:KE2 (PF01920) at aa 4-111, E()=1.90e-08; pfam:Prefoldin (PF02996) at aa 7-109, E()=6.50e-02; uncharacterized protein	join(945675..945781,945899..946022,946105..946218)	Theileria annulata	3863156
TA08620	CDS	TA08620	NC_011098.1	946301	948402	R	Tap349h10.p1c.C.cand.40 - score = 44.37; SMART pfam:tRNA-synt_2 (Pf00152) at aa 330-678, E()=2.60e-50; pfam:tRNA-synt_2b (PF00587) at aa 328-463, E()=3.40e-04; pfam:tRNA-synt_2d (PF01409) at aa 344-668, E()=3.70e-03; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA08620 by SignalP 2.0 HMM (Signal peptide probability 0.921, signal anchor probability 0.000) with cleavage site probability 0.692 between residues 23 and 24; lysyl t-RNA synthetase, putative	complement(join(946301..947101,947164..948402))	Theileria annulata	3863157
TA08625	CDS	TA08625	NC_011098.1	948610	948958	D	Tap349h10.p1c.cand.190 - score = 10.80; SMART pfam:RNA_pol_L (PF01193) at aa 1-87, E()=8.10e-28; RNA polymerases I and III subunit (RPC19 homologue), putative	join(948610..948784,948861..948958)	Theileria annulata	3863158
TA08630	CDS	TA08630	NC_011098.1	949386	952456	D	Tap349h10.p1c.cand.191 - score = 62.98; SMART 2 BBOX domains (SM00336) at aa 194-214, E()=3.19e-03 and 246-293, E()=1.84e+00; ZnF_NFX (SM00438) at aa 199-224, E()=0.00e+00; uncharacterized protein	join(949386..949556,949613..949769,949854..949943,949975..950200,950232..950382,950431..950784,950818..951333,951401..951499,951552..952151,952217..952456)	Theileria annulata	3863159
TA08635	CDS	TA08635	NC_011098.1	952562	956728	R	Tap349h10.p1c.C.cand.39 - score = 103.11; SMART pfam:Peptidase_M16 (PF00675) at aa 98-238, E()=6.90e-07; pfam:Peptidase_M16_C (PF05193) at aa 253-452, E()=1.00e-02; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA08635 by TMHMM2.0 at aa 13-35; Signal peptide predicted for TA08635 by SignalP 2.0 HMM (Signal peptide probability 0.672, signal anchor probability 0.242) with cleavage site probability 0.237 between residues 32 and 33; M16 peptidase, putative	complement(join(952562..952982,953077..953127,953176..953214,953249..953712,953758..954723,954754..954833,954867..955457,955489..955532,955565..955679,955708..955826,955859..955989,956023..956179,956226..956425,956458..956496,956540..956728))	Theileria annulata	3863160
TA08640	CDS	TA08640	NC_011098.1	957069	959407	D	Tap349h10.p1c.cand.192 - score = 57.37; SMART 4 pfam:HEAT (PF02985) domains at aa 203-239, E()=6.20e-02; 395-433, E()=2.70e-02; 474-512, E()=3.30e-05; 563-601, E()=1.60e-04; phosphorylase phosphatase, putative	join(957069..957333,957431..957585,957614..957734,957764..957854,957886..958189,958222..958547,958580..958985,959033..959104,959134..959234,959302..959407)	Theileria annulata	3863161
TA08645	CDS	TA08645	NC_011098.1	959489	960982	D	Tap349h10.p1c.cand.193 - score = 32.78; SMART rADC (SM00650) at aa 84-252, E()=4.31e-65; dimethyladenosine transferase, putative	join(959489..959600,959673..959876,959929..960175,960220..960353,960417..960487,960519..960683,960714..960858,960927..960982)	Theileria annulata	3863162
TA08650	CDS	TA08650	NC_011098.1	960983	964479	R	Tap349h10.p1c.C.cand.38 - score = 133.54; SMART pfam:zf-HIT (PF04438) at aa 865-902, E()=3.70e-05; uncharacterized protein	complement(join(960983..961199,961303..961459,961742..961857,961952..963118,963159..963604,963634..963695,963725..963786,963840..964182,964247..964344,964391..964479))	Theileria annulata	3863163
TA08655	CDS	TA08655	NC_011098.1	964719	968015	R	Tap349h10.p1c.C.cand.38 - score = 133.54; uncharacterized protein	complement(964719..968015)	Theileria annulata	3863164
TA08660	CDS	TA08660	NC_011098.1	968427	971143	R	Tap349h10.p1c.C.cand.37 - score = 62.96; uncharacterized protein	complement(join(968427..968540,968569..968682,968722..968829,969013..969087,969116..969183,969254..969327,969359..969405,969503..969821,969851..969955,969986..970238,970271..970340,970370..970553,970583..970655,970685..970849,970889..971008,971065..971143))	Theileria annulata	3863165
TA08665	CDS	TA08665	NC_011098.1	971835	972176	D	Tap349h10.p1c.cand.195 - score = 12.90; SMART pfam:Ribosomal_L44 (PF00935) at aa 18-94, E()=1.60e-42; 60S ribosomal protein L44, putative	join(971835..972047,972078..972176)	Theileria annulata	3863166
TA08670	CDS	TA08670	NC_011098.1	973089	974923	D	Tap349h10.p1c.cand.196 - score = 32.56; SMART 8 transmembrane domains, at aa 73-95, 110-132, 152-174, 194-216, 390-412, 471-493, 514-536 and 564-586; 9 probable transmembrane helices predicted for TA08670 by TMHMM2.0 at aa 10-32, 73-95, 110-132, 152-174, 194-216, 390-412, 471-493, 514-536 and 564-586; Signal peptide predicted for TA08670 by SignalP 2.0 HMM (Signal peptide probability 0.854, signal anchor probability 0.145) with cleavage site probability 0.276 between residues 22 and 23; uncharacterized protein	join(973089..973517,973547..974923)	Theileria annulata	3863167
TA08675	CDS	TA08675	NC_011098.1	975072	978197	R	Tap349h10.p1c.C.cand.36 - score = 105.97; SMART pfam:TPR (PF00515) at aa 78-111, E()=2.40e-03; uncharacterized protein	complement(975072..978197)	Theileria annulata	3863168
TA08680	CDS	TA08680	NC_011098.1	978375	980099	R	Tap349h10.p1c.C.cand.36 - score = 105.97; uncharacterized protein	complement(978375..980099)	Theileria annulata	3863169
TA08685	CDS	TA08685	NC_011098.1	981321	984560	R	Tap349h10.p1c.C.cand.35 - score = 69.83; SMART 10 WD40(SM00320) domains at aa 155-194, E()=1.30e-07; 200-238, E()=2.40e-01; 276-315, E()=2.84e+02; 318-360, E()=1.07e+01; 363-431, E()=8.62e-04; 434-473, E()=8.55e-08; 479-517, E()=5.70e+01; 520-562, E()=7.16e-10; 570-608, E()=1.92e+00; 742-782, E()=4.77e+00; pfam:PWP2 (PF04047) at aa 831-957, E()=3.60e-04; uncharacterized protein	complement(join(981321..982355,982389..982550,982611..982919,982966..983466,983498..983559,983597..983668,983699..984002,984032..984113,984144..984252,984284..984436,984476..984560))	Theileria annulata	3863170
TA08690	CDS	TA08690	NC_011098.1	985158	987231	D	1 probable transmembrane helix predicted for TA08690 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA08690 by SignalP 2.0 HMM (Signal peptide probability 0.962, signal anchor probability 0.024) with cleavage site probability 0.845 between residues 22 and 23; uncharacterized protein	join(985158..985446,985476..985543,985591..985702,985739..985812,986035..986051,986090..986686,986727..986876,986907..987231)	Theileria annulata	3863171
TA08695	CDS	TA08695	NC_011098.1	987405	989251	D	uncharacterized protein	join(987405..987622,987659..987867,987896..987982,988016..988176,988207..988379,988397..988476,988508..988641,988658..988710,988736..988898,988907..989251)	Theileria annulata	3863172
TA08700	CDS	TA08700	NC_011098.1	989448	990329	D	Tap349h10.p1c.cand.198 - score = 25.77; SMART SprT (SM00371) at aa 20-187, E()=9.94e-30; uncharacterized protein	join(989448..989624,989653..989721,989750..989824,989854..989967,990000..990081,990113..990199,990229..990329)	Theileria annulata	3863173
TA08705	CDS	TA08705	NC_011098.1	990394	991587	R	SMART pfam:GST_C (PF00043) at aa 81-189, E()=3.60e-02; pfam:EF1G_domain (PF00647) at aa 225-335, E()=6.20e-28; elongation factor 1-gamma, putative	complement(join(990394..991554,991579..991587))	Theileria annulata	3863174
TA08710	CDS	TA08710	NC_011098.1	992434	993072	D	Tap349h10.p1c.cand.199 - score = 20.44; SMART pfam:Ribosomal_L6e (PF01159) at aa 81-212, E()=6.40e-18; 60S ribosomal protein L6, putative	992434..993072	Theileria annulata	3863175
TA08725	CDS	TA08725	NC_011098.1	993196	995500	R	Tap349h10.p1c.C.cand.32 - score = 70.32; SMART AAA (SM00382) at aa 241-377, E()=1.96e-19; pfam:Peptidase_M41 (PF01434) at aa 434-646, E()=7.60e-73; 1 probable transmembrane helix predicted for TA08725 by TMHMM2.0 at aa 167-184; metallopeptidase, putative	complement(join(993196..993447,993515..994702,994732..994888,994919..995019,995123..995500))	Theileria annulata	3863178
TA08730	CDS	TA08730	NC_011098.1	995631	997531	R	Tap349h10.p1c.C.cand.31 - score = 50.81; uncharacterized protein	complement(join(995631..995728,995760..995899,995930..996110,996140..996211,996241..996706,996737..996934,996962..997531))	Theileria annulata	3863179
TA08735	CDS	TA08735	NC_011098.1	997803	999609	D	Tap349h10.p1c.cand.200 - score = 66.23; SMART ZnF_ZZ (SM00291) at aa 358-404, E()=2.81e-02; uncharacterized protein	join(997803..997893,997929..998113,998145..998235,998266..998405,998438..998480,998510..998624,998654..998716,998751..999609)	Theileria annulata	3863180
TA08740	CDS	TA08740	NC_011098.1	999884	1000978	R	Tap349h10.p1c.C.cand.30 - score = 40.07; uncharacterized protein	complement(join(999884..999949,999979..1000304,1000334..1000447,1000491..1000590,1000620..1000831,1000873..1000978))	Theileria annulata	3863181
TA08745	CDS	TA08745	NC_011098.1	1001293	1002727	D	Tap349h10.p1c.cand.201 - score = 50.18; SMART pfam:PH (PF00169) at aa 219-313, E()=3.30e-03; Signal peptide predicted for TA08745 by SignalP 2.0 HMM (Signal peptide probability 0.973, signal anchor probability 0.013) with cleavage site probability 0.946 between residues 22 and 23; uncharacterized protein	join(1001293..1001355,1001389..1001673,1001704..1002001,1002031..1002166,1002199..1002335,1002368..1002498,1002530..1002650,1002696..1002727)	Theileria annulata	3863182
TA08750	CDS	TA08750	NC_011098.1	1002982	1006282	D	Tap349h10.p1c.cand.202 - score = 84.04; SMART pfam:SMC_N (PF02463) at aa 4-186, E()=1.70e-03; pfam:DNA_pol3_beta (PF00712) at aa 783-888, E()=7.90e-02; pfam:SMC_C (PF02483) at aa 872-1061, E()=1.90e-03; chromosome maintenance protein (SMC5 homologue), putative	join(1002982..1003743,1003775..1006282)	Theileria annulata	3863183
TA08755	CDS	TA08755	NC_011098.1	1006739	1009516	D	Tap349h10.p1c.cand.203 - score = 58.41; SMART DEXDc (SM00487) at aa 247-453, E()=7.55e-31; HELICc (SM00490) at 485-566, E()=1.03e-23; DNA helicase (SGS1 homologue), putative	1006739..1009516	Theileria annulata	3863184
TA08760	CDS	TA08760	NC_011098.1	1009608	1010119	R	Tap349h10.p1c.C.cand.29 - score = 20.36; uncharacterized protein	complement(join(1009608..1009707,1009746..1009899,1009940..1009991,1010021..1010119))	Theileria annulata	3863185
TA08765	CDS	TA08765	NC_011098.1	1010225	1012693	R	Tap349h10.p1c.C.cand.28 - score = 67.72; uncharacterized protein	complement(join(1010225..1010331,1010363..1010786,1010818..1010994,1011024..1011614,1011645..1011848,1011878..1012428,1012471..1012693))	Theileria annulata	3863186
TA08770	CDS	TA08770	NC_011098.1	1012866	1013591	R	Tap349h10.p1c.C.cand.27 - score = 19.88; uncharacterized protein	complement(1012866..1013591)	Theileria annulata	3863187
TA08775	CDS	TA08775	NC_011098.1	1013675	1015458	R	Tap349h10.p1c.C.cand.26 - score = 52.02; SMART pfam:DiHfolate_red (P00186) at aa 10-197, E()=2.00e-28; pfam:thymidilat_synt (PF00303) at aa 238-523, E()=3.60e-195; bifunctional dihydrofolate reductase/thymidilate synthase, putative	complement(join(1013675..1013899,1013934..1014094,1014126..1014220,1014250..1014316,1014346..1014491,1014522..1014615,1014644..1015152,1015184..1015458))	Theileria annulata	3863188
TA08780	CDS	TA08780	NC_011098.1	1015659	1015913	R	Tap349h10.p1c.C.cand.25 - score = 9.84; SMART 1 transmembrane domain at aa 24-41; 1 probable transmembrane helix predicted for TA08780 by TMHMM2.0 at aa 24-41; uncharacterized protein	complement(join(1015659..1015752,1015783..1015913))	Theileria annulata	3863189
TA08785	CDS	TA08785	NC_011098.1	1016596	1019423	D	Tap349h10.p1c.cand.204 - score = 69.41; SMART STYKc (SM00221) at aa 393-647, E()=5.49e-09; protein kinase, putative	join(1016596..1016776,1016816..1017510,1017541..1017628,1017659..1017738,1017796..1017922,1017952..1018186,1018219..1018433,1018463..1018603,1018633..1018871,1018901..1019147,1019178..1019254,1019286..1019423)	Theileria annulata	3863190
TA08790	CDS	TA08790	NC_011098.1	1019723	1024360	D	Tap349h10.p1c.cand.205 - score = 120.63; SMART 2 SANT (SM00717) domains at aa 1162-1210, E()=1.27e-06; 1492-1542, E()=7.94e-08; uncharacterized protein	1019723..1024360	Theileria annulata	3863191
TA08795	CDS	TA08795	NC_011098.1	1024625	1026513	D	Tap349h10.p1c.cand.205 - score = 120.63; uncharacterized protein	join(1024625..1024738,1024834..1026191,1026222..1026325,1026356..1026513)	Theileria annulata	3863192
TA08800	CDS	TA08800	NC_011098.1	1026805	1029950	D	Tap349h10.p1c.cand.206 - score = 75.36; SMART 1 transmembrane domain at aa 208-230; MCM (SM00350) at aa 310-861, E()=2.61e-20; 2 probable transmembrane helices predicted for TA08800 by TMHMM2.0 at aa 208-230 and 322-341; DNA replication protein (MCM homologue), putative	join(1026805..1027810,1027840..1027968,1028001..1028082,1028112..1028270,1028300..1028391,1028426..1028560,1028591..1028719,1028754..1028861,1028892..1029082,1029112..1029628,1029661..1029950)	Theileria annulata	3863193
TA08805	CDS	TA08805	NC_011098.1	1030060	1032312	D	Tap349h10.p1c.cand.207 - score = 66.61; uncharacterized protein	join(1030060..1030071,1030108..1030214,1030244..1030466,1030499..1030653,1030684..1030720,1030751..1030820,1030852..1030948,1030977..1031077,1031109..1031256,1031287..1031344,1031375..1031473,1031504..1031597,1031626..1031862,1031893..1031997,1032029..1032137,1032189..1032312)	Theileria annulata	3863194
TA08810	CDS	TA08810	NC_011098.1	1032320	1032780	D	uncharacterized protein	join(1032320..1032616,1032646..1032780)	Theileria annulata	3863195
TA08815	CDS	TA08815	NC_011098.1	1032859	1034630	R	Tap349h10.p1c.C.cand.24 - score = 61.44; SMART pfam:GTP_EFTU (PF00009) at aa 100-334, E()=6.10e-80; pfam:GTP_EFTU_D2 (PF03144) at aa 351-420, E()=4.20e-07; pfam:GTP_EFTU_D3 (PF03143) at aa 425-536, E()=4.20e-11; elongation factor subunit (either EF1 or release factor), putative	complement(join(1032859..1033272,1033304..1033794,1033826..1034048,1034080..1034203,1034234..1034360,1034390..1034630))	Theileria annulata	3863196
TA08820	CDS	TA08820	NC_011098.1	1034910	1036211	D	Tap349h10.p1c.cand.208 - score = 35.31; SMART RING (SM00184) at aa 9-46, E()=2.80e-08; uncharacterized protein	join(1034910..1034939,1034971..1035045,1035082..1035345,1035376..1035447,1035475..1035546,1035577..1035959,1036028..1036211)	Theileria annulata	3863197
TA08835	CDS	TA08835	NC_011098.1	1036770	1037817	R	Tap349h10.p1c.C.cand.23 - score = 24.30; SMART 4 LRR domains (SM00370) at aa 71-96, E()=1.62e+01; 102-127, E()=7.48e+01; 216-241, E()=3.67e+02; 265-289, E()=3.89e+02; uncharacterized protein	complement(join(1036770..1036939,1036981..1037071,1037101..1037289,1037321..1037579,1037609..1037817))	Theileria annulata	3863200
TA08840	CDS	TA08840	NC_011098.1	1037995	1041689	R	Tap349h10.p1c.C.cand.22 - score = 88.36; SMART 3 EFh domains (SM00054) at aa 62-90, E()=2.44e+01; 98-126, E()=6.88e-01; 413-441, E()=3.64e+01; ZnF_NFX (SM00438) at aa 581-606, E()=0.00e+00; PH (SM00233) at aa 718-818, E()=1.15e-13; S_TKc (SM00220) at aa 824-1080, E()=4.00e-96; uncharacterized protein	complement(join(1037995..1040741,1040772..1040897,1040927..1041211,1041242..1041439,1041470..1041689))	Theileria annulata	3863201
TA08845	CDS	TA08845	NC_011098.1	1042281	1049011	D	Tap349h10.p1c.cand.209 - score = 133.99; SMART ZnF_UBR1 (SM00396) at aa 57-126, E()=3.93e-15; RING (SM00184) at aa 983-1077, E()=2.93e-02; ubiquitin protein ligase E3 component (N-recognin), putative	join(1042281..1042440,1042490..1042582,1042612..1042683,1042714..1042963,1042995..1043079,1043109..1043177,1043209..1043459,1043492..1043667,1043703..1049011)	Theileria annulata	3863202
TA08850	CDS	TA08850	NC_011098.1	1049152	1049892	D	uncharacterized protein	join(1049152..1049255,1049322..1049892)	Theileria annulata	3863203
TA08855	CDS	TA08855	NC_011098.1	1050117	1057516	R	Tap349h10.p1c.C.cand.21 - score = 124.65; SMART 2 transmembrane domains 1706-1728 and 1910-1932; 2 probable transmembrane helices predicted for TA08855 by TMHMM2.0 at aa 1706-1728 and 1910-1932; uncharacterized protein	complement(join(1050117..1050353,1050448..1050629,1050659..1050755,1050828..1052126,1052156..1052360,1052391..1057516))	Theileria annulata	3863204
TA08860	CDS	TA08860	NC_011098.1	1057825	1060288	D	Tap349h10.p1c.cand.210 - score = 45.26; uncharacterized protein	join(1057825..1059699,1059730..1060159,1060188..1060288)	Theileria annulata	3863205
TA08865	CDS	TA08865	NC_011098.1	1060470	1062139	R	Tap349h10.p1c.C.cand.20 - score = 13.46; SMART pfam:Mannosyl_trans (PF05007) at aa 141-417, E()=2.60e-35; 8 probable transmembrane helices predicted for TA08865 by TMHMM2.0 at aa 20-42, 140-162, 169-191, 227-249, 287-309, 329-346, 353-375 and 390-412; mannosyltransferase, putative	complement(join(1060470..1060805,1060834..1060929,1060989..1061106,1061170..1061288,1061326..1061428,1061478..1061747,1061803..1061914,1062004..1062139))	Theileria annulata	3863206
TA08875	CDS	TA08875	NC_011098.1	1062928	1063878	D	Tap349h10.p1c.cand.211 - score = 19.92; uncharacterized protein	1062928..1063878	Theileria annulata	3863207
TA08880	CDS	TA08880	NC_011098.1	1064456	1065726	D	1 probable transmembrane helix predicted for TA08880 by TMHMM2.0 at aa 20-39; Signal anchor predicted for TA08880 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues 40 and 41; uncharacterized protein	join(1064456..1064605,1064639..1065128,1065191..1065532,1065575..1065726)	Theileria annulata	3863208
TA08890	CDS	TA08890	NC_011098.1	1065979	1068498	D	Tap349h10.p1c.cand.213 - score = 59.06; SMART pfam:Kelch (PF01344) at aa 365-421, E()=4.00e-05; uncharacterized protein	join(1065979..1066072,1066114..1066836,1066893..1067404,1067435..1067521,1067553..1067604,1067668..1067834,1067881..1068498)	Theileria annulata	3863210
TA08895	CDS	TA08895	NC_011098.1	1068685	1069041	R	Tap349h10.p1c.C.cand.19 - score = 11.24; SMART pfam:RNA_POL_M_15KD (PF02150) at aa 4-55, E()=6.50e-02; ZnF_C2C2 (SM00440) at aa 69-108, E()=7.08e-20; RNA polymerase small subunit, putative	complement(join(1068685..1068806,1068837..1069041))	Theileria annulata	3863211
TA08900	CDS	TA08900	NC_011098.1	1069110	1071970	R	Tap349h10.p1c.C.cand.18 - score = 64.48; SMART XPGN (SM00485) at aa 64-159, E()=5.25e-13; XPGI (SM00484) at aa 597-665, E()=9.56e-25; HhH2 (SM00279) at aa 667-700, E()=1.02e-10; endonuclease (xp-g/RAD2 homologue), putative	complement(join(1069110..1071564,1071637..1071705,1071752..1071852,1071896..1071970))	Theileria annulata	3863212
TA08905	CDS	TA08905	NC_011098.1	1072350	1072970	D	Tap349h10.p1c.cand.214 - score = 13.22; uncharacterized protein	1072350..1072970	Theileria annulata	3863135
TA08910	CDS	TA08910	NC_011098.1	1073001	1073399	D	Tap349h10.p1c.cand.215 - score = 11.51; uncharacterized protein	join(1073001..1073190,1073242..1073399)	Theileria annulata	3863136
TA08915	CDS	TA08915	NC_011098.1	1075205	1076347	D	Tap349h10.p1c.cand.217 - score = 31.95; uncharacterized protein	join(1075205..1075637,1075698..1076347)	Theileria annulata	3863137
TA08920	CDS	TA08920	NC_011098.1	1076563	1079565	D	Tap349h10.p1c.cand.218 - score = 44.95; SMART 1 transmembrane domain at aa 227-249; 1 probable transmembrane helix predicted for TA08920 by TMHMM2.0 at aa 227-249; uncharacterized protein	1076563..1079565	Theileria annulata	3863138
TA08925	CDS	TA08925	NC_011098.1	1079732	1081138	R	Tap349h10.p1c.C.cand.17 - score = 23.28; SMART 2 transmembrane domains at aa 138-155 and 432-454; 2 probable transmembrane helices predicted for TA08925 by TMHMM2.0 at aa 138-155 and 432-454; uncharacterized protein	complement(1079732..1081138)	Theileria annulata	3863139
TA08930	CDS	TA08930	NC_011098.1	1081677	1082847	D	Tap349h10.p1c.cand.219 - score = 29.14; SMART RING (SM00184) at aa 284-334, E()=4.73e-06; uncharacterized protein	join(1081677..1081764,1081800..1081862,1081952..1082847)	Theileria annulata	3863140
TA08935	CDS	TA08935	NC_011098.1	1082960	1083354	R	Tap349h10.p1c.C.cand.16 - score = 14.63; SMART 2 transmembrane domains at aa 5-27 and 34-56; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA08935 by TMHMM2.0 at aa 5-27 and 34-56; Signal anchor predicted for TA08935 by SignalP 2.0 HMM (Signal peptide probability 0.009, signal anchor probability 0.795) with cleavage site probability 0.006 between residues 24 and 25; uncharacterized protein	complement(join(1082960..1083049,1083087..1083194,1083232..1083354))	Theileria annulata	3863141
TA08945	CDS	TA08945	NC_011098.1	1083421	1085071	R	Tap349h10.p1c.C.cand.15 - score = 51.07; SMART 3 RRM (SM00360) domains at aa 155-228, E()=1.13e-22; 302-376, E()=1.36e-07; 389-465, E()=9.65e-08; RNA binding protein, putative	complement(join(1083421..1083530,1083560..1083665,1083695..1084092,1084140..1084247,1084283..1084484,1084526..1084711,1084742..1085071))	Theileria annulata	3863143
TA08950	CDS	TA08950	NC_011098.1	1085865	1089822	D	Tap349h10.p1c.cand.220 - score = 85.64; SMART pfam:CAS_CSE1 (PF03378) at aa 769-1203, E()=8.50e-11; importin-alpha, putative	join(1085865..1086072,1086104..1087411,1087478..1088019,1088077..1088379,1088438..1088788,1088847..1088945,1088998..1089822)	Theileria annulata	3863144
TA08955	CDS	TA08955	NC_011098.1	1090292	1090945	D	Tap349h10.p1c.cand.221 - score = 16.68; SMART SAR (SM00178) at aa 5-191, E()=1.50e-82; small GTPase, putative	join(1090292..1090311,1090378..1090945)	Theileria annulata	3863145
TA08960	CDS	TA08960	NC_011098.1	1091082	1091794	D	Tap349h10.p1c.cand.221 - score = 16.68; SMART RRM (SM00360) at aa 98-153, E()=8.47e-07; uncharacterized protein	join(1091082..1091209,1091283..1091496,1091567..1091794)	Theileria annulata	3863146
TA08965	CDS	TA08965	NC_011098.1	1091824	1095115	R	Tap349h10.p1c.C.cand.14 - score = 69.83; uncharacterized protein	complement(join(1091824..1091937,1091997..1092489,1092537..1092604,1092674..1095115))	Theileria annulata	3863147
TA08970	CDS	TA08970	NC_011098.1	1095206	1095976	R	Tap349h10.p1c.C.cand.13 - score = 23.09; uncharacterized protein	complement(join(1095206..1095499,1095554..1095686,1095719..1095835,1095867..1095976))	Theileria annulata	3863148
TA08975	CDS	TA08975	NC_011098.1	1096407	1097248	D	Tap349h10.p1c.cand.222 - score = 17.65; SMART PHB (SM00244) at aa 93-258, E()=6.41e-01; 1 probable transmembrane helix predicted for TA08975 by TMHMM2.0 at aa 81-103; prohibitin-like protein, putative	join(1096407..1096737,1096767..1097248)	Theileria annulata	3863149
TA08980	CDS	TA08980	NC_011098.1	1098273	1099672	D	SMART pfam:CRAL_TRIO_N (PF03765) at aa 111-172, E()=1.00e-01; SEC14 (SM00516) at aa 177-335, E()=9.15e-09; uncharacterized protein	join(1098273..1098877,1099012..1099485,1099546..1099672)	Theileria annulata	3863150
TA08985	CDS	TA08985	NC_011098.1	1099778	1102088	D	Tap349h10.p1c.cand.224 - score = 59.76; SMART 1 transmembrane domain at aa 241-263; 1 probable transmembrane helix predicted for TA08985 by TMHMM2.0 at aa 241-263; uncharacterized protein	join(1099778..1100714,1100745..1100844,1100877..1100955,1100996..1101060,1101143..1101760,1101809..1102088)	Theileria annulata	3863151
TA08990	CDS	TA08990	NC_011098.1	1102185	1103624	R	Tap349h10.p1c.C.cand.12 - score = 12.12; SMART ZnF_NFX (SM00438) at aa 1-13, E()=0.00e+00; pfam:UPF0103 (PF01875) at aa 36318, E()=3.40e-87; pfam:LIgB (PF02900) at aa 58-309, E()=4.10e-02; 1 probable transmembrane helix predicted for TA08990 by TMHMM2.0 at aa 20-39; uncharacterized protein	complement(join(1102185..1102256,1102292..1102345,1102376..1102446,1102485..1102594,1102624..1102670,1102719..1102750,1102783..1102847,1102912..1103136,1103210..1103278,1103348..1103397,1103526..1103624))	Theileria annulata	3863152
TA09000	CDS	TA09000	NC_011098.1	1103687	1105270	R	Tap349h10.p1c.C.cand.11 - score = 33.54; SMART S_TKc (SM00220) at aa 92-391, E()=7.14e-93; serine/threonine protein kinase, putative	complement(join(1103687..1103772,1103824..1103865,1103932..1103992,1104062..1104202,1104233..1105270))	Theileria annulata	3863213
TA09005	CDS	TA09005	NC_011098.1	1105643	1106694	D	Tap349h10.p1c.cand.225 - score = 18.85; SMART pfam:mito_carr (PF00153) at aa 97-185, E()=9.60e-13 and 195-288, E()=1.60e-07; 2 transmembrane domains at aa 13-35 and 70-92; 3 probable transmembrane helices predicted for TA09005 by TMHMM2.0 at aa 13-35, 70-92 and 193-215; mitochondrial carrier protein, putative	join(1105643..1105706,1105738..1105890,1105928..1106252,1106307..1106439,1106503..1106694)	Theileria annulata	3863214
TA09010	CDS	TA09010	NC_011098.1	1107007	1107865	D	Tap349h10.p1c.cand.226 - score = 19.34; SMART BTB (SM00225) at aa 58-178, E()-3.15e-04; uncharacterized protein	join(1107007..1107708,1107776..1107865)	Theileria annulata	3863215
TA09015	CDS	TA09015	NC_011098.1	1107881	1109577	R	Tap349h10.p1c.C.cand.10 - score = 42.30; SMART RING (SM00184) at aa 9-52, E()=2.76e-07; uncharacterized protein	complement(join(1107881..1108457,1108516..1108599,1108630..1108685,1108719..1108773,1108804..1108985,1109049..1109132,1109186..1109220,1109255..1109367,1109477..1109577))	Theileria annulata	3863216
TA09020	CDS	TA09020	NC_011098.1	1109813	1110272	D	1 probable transmembrane helix predicted for TA09020 by TMHMM2.0 at aa 124-141; uncharacterized protein	join(1109813..1109894,1109926..1110272)	Theileria annulata	3863217
TA09025	CDS	TA09025	NC_011098.1	1110299	1113172	D	Tap349h10.p1c.cand.227 - score = 92.01; uncharacterized protein	join(1110299..1110322,1110359..1110407,1110441..1110511,1110541..1110756,1110813..1111084,1111123..1111295,1111352..1111801,1111832..1112549,1112579..1112636,1112671..1112757,1112822..1112948,1113018..1113172)	Theileria annulata	3863218
TA09030	CDS	TA09030	NC_011098.1	1113561	1118534	D	Tap349h10.p1c.cand.228 - score = 137.28; SMART pfam:TPR (PF00515) at aa 313-346, E()=4.10e-04; FH2 (SM00498) at aa 1160-1602, E()=7.35e-26; uncharacterized protein	join(1113561..1117232,1117284..1117400,1117441..1117528,1117571..1117920,1117953..1118534)	Theileria annulata	3863219
TA09035	CDS	TA09035	NC_011098.1	1119228	1120022	R	Tap349h10.p1c.C.cand.8 - score = 12.67; SMART pfam:SGS (PF05002) at aa 32-80, E()=1.20e-02; uncharacterized protein	complement(join(1119228..1119440,1119800..1119922,1119951..1120022))	Theileria annulata	3863220
TA09040	CDS	TA09040	NC_011098.1	1120814	1122001	D	Tap349h10.p1c.cand.229 - score = 72.42; uncharacterized protein	join(1120814..1120856,1120910..1121433,1121464..1121580,1121631..1121818,1121881..1122001)	Theileria annulata	3863221
TA09045	CDS	TA09045	NC_011098.1	1122190	1124147	D	Tap349h10.p1c.cand.229 - score = 72.42; SMART pfam:peptidase_M17 (PF00883) at aa 214-520, E()=8.90e-124; cytosol aminopeptidase, putative	join(1122190..1122464,1122542..1122881,1122923..1123234,1123289..1123489,1123558..1123681,1123732..1123792,1123849..1124005,1124037..1124147)	Theileria annulata	3863222
TA09055	CDS	TA09055	NC_011098.1	1124468	1125187	D	Tap349h10.p1c.cand.230 - score = 11.70; uncharacterized protein	1124468..1125187	Theileria annulata	3863224
TA09060	CDS	TA09060	NC_011098.1	1125256	1127218	R	Tap349h10.p1c.C.cand.7 - score = 47.44; SMART DEXDc (SM00487) at aa 207-414, E()=1.43e-54; HELICc (SM00490) at aa 451-532, E()=1.28e-33; DEAD-box family RNA-dependent helicase, putative	complement(join(1125256..1125503,1125575..1126465,1126507..1127218))	Theileria annulata	3863225
TA09065	CDS	TA09065	NC_011098.1	1128315	1129481	D	Tap349h10.p1c.cand.231 - score = 27.09; SMART pfam:HABP4_PAI-RBP1 (PF04774) at aa 102-258, E()=1.30e-04; uncharacterized protein	join(1128315..1128441,1128649..1129376,1129407..1129481)	Theileria annulata	3863226
TA09070	CDS	TA09070	NC_011098.1	1129520	1130484	R	Tap349h10.p1c.C.cand.6 - score = 31.87; uncharacterized protein	complement(join(1129520..1129679,1129711..1129811,1129857..1130123,1130212..1130484))	Theileria annulata	3863227
TA09075	CDS	TA09075	NC_011098.1	1130600	1131905	R	Tap349h10.p1c.C.cand.6 - score = 31.87; methylase-like protein, putative	complement(join(1130600..1130671,1130702..1130770,1130800..1130832,1130898..1131005,1131048..1131276,1131305..1131443,1131638..1131743,1131813..1131905))	Theileria annulata	3863228
TA09080	CDS	TA09080	NC_011098.1	1131998	1132576	R	Tap349h10.p1c.C.cand.5 - score = 11.67; SMART 2 transmembrane domains at aa 5-27, 47-69; 2 probable transmembrane helices predicted for TA09080 by TMHMM2.0 at aa 5-27 and 47-69; Signal anchor predicted for TA09080 by SignalP 2.0 HMM (Signal peptide probability 0.069, signal anchor probability 0.899) with cleavage site probability 0.022 between residues 30 and 31; uncharacterized protein	complement(1131998..1132576)	Theileria annulata	3863229
TA09085	CDS	TA09085	NC_011098.1	1132842	1133383	R	Tap349h10.p1c.C.cand.4 - score = 14.09; SMART pfam:Sybindin (PF04099) at aa 1-150, E()=1.50e-29; sybindin, putative	complement(join(1132842..1133029,1133062..1133278,1133333..1133383))	Theileria annulata	3863230
TA09090	CDS	TA09090	NC_011098.1	1134161	1135525	D	Tap349h10.p1c.cand.232 - score = 24.38; uncharacterized protein	1134161..1135525	Theileria annulata	3863231
TA09095	CDS	TA09095	NC_011098.1	1135879	1136181	D	SMART 2 transmembrane domains at aa 21-43 and 58-80; 2 probable transmembrane helices predicted for TA09095 by TMHMM2.0 at aa 21-43 and 58-80; uncharacterized protein	1135879..1136181	Theileria annulata	3863232
TA09100	CDS	TA09100	NC_011098.1	1136685	1139008	D	Tap349h10.p1c.cand.233 - score = 41.45; SMART pfam:PI3_PI4_kinase (PF00454) at aa 149-474, E()=5.20e-40; uncharacterized protein	join(1136685..1136843,1136897..1137092,1137141..1137236,1137286..1137624,1137729..1138414,1138484..1139008)	Theileria annulata	3863233
TA09105	CDS	TA09105	NC_011098.1	1139079	1141435	R	Tap349h10.p1c.C.cand.3 - score = 40.68; SMART pfam:tRNA-synt_1 (PF00133) at aa 44-535, E()=2.10e-11; valyl-tRNA synthetase, putative	complement(join(1139079..1141204,1141237..1141435))	Theileria annulata	3863234
TA09110	CDS	TA09110	NC_011098.1	1141475	1145764	R	Tap349h10.p1c.C.cand.2 - score = 58.21; SMART 5 PHD (SM00249) domains at aa 100-166, E()=8.57e+00; 243-315, E()=9.56e-02; 902-948, E()=7.76e-02; 1062-1110, E()=5.88e-02; 1323-1374, E()=1.19e-02; ZnF_NFX (SM00438) at aa 1151-1170, E()=0.00e+00; uncharacterized protein	complement(1141475..1145764)	Theileria annulata	3863235
TA09115	CDS	TA09115	NC_011098.1	1146378	1147825	D	Tap349h10.p1c.cand.234 - score = 62.38; SMART 1 transmembrane at aa 13-35; 1 probable transmembrane helix predicted for TA09115 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09115 by SignalP 2.0 HMM (Signal peptide probability 0.179, signal anchor probability 0.776) with cleavage site probability 0.092 between residues 29 and 30; uncharacterized protein	join(1146378..1146620,1146695..1146802,1146833..1147043,1147110..1147262,1147341..1147825)	Theileria annulata	3863236
TA09120	CDS	TA09120	NC_011098.1	1147938	1149549	D	SMART 1 transmembrane domain at aa 330-352; 1 probable transmembrane helix predicted for TA09120 by TMHMM2.0 at aa 330-352; uncharacterized protein	join(1147938..1148148,1148220..1148406,1148496..1148785,1148908..1149038,1149117..1149234,1149326..1149549)	Theileria annulata	3863237
TA09125	CDS	TA09125	NC_011098.1	1149678	1150421	R	Tap349h10.p1c.C.cand.1 - score = 18.74; SMART small_GTPase (SM00010) at aa 2-211, E()=1.73e-08; 46-238, E()=1.40e-03; small GTPase (Rab family member), putative	complement(1149678..1150421)	Theileria annulata	3863238
TA09130	CDS	TA09130	NC_011098.1	1150985	1152548	D	Tap349h10.p1c.cand.235 - score = 10.78; uncharacterized protein	join(1150985..1151413,1151460..1152548)	Theileria annulata	3863239
TA11045	CDS	TA11045	NC_011098.1	1152586	1154513	R	SMART CYCLIN (SM00385) at aa 78-162, E()=3.99e-05; cyclin, putative	complement(join(1152586..1152653,1152770..1152824,1152855..1152927,1153114..1153209,1153240..1153349,1153525..1153628,1153729..1153826,1153857..1153930,1153996..1154111,1154190..1154334,1154493..1154513))	Theileria annulata	3862865
TA11040	CDS	TA11040	NC_011098.1	1154724	1156768	D	uncharacterized protein	join(1154724..1155330,1155505..1156325,1156454..1156768)	Theileria annulata	3862864
TA11035	CDS	TA11035	NC_011098.1	1156787	1157159	R	uncharacterized protein	complement(join(1156787..1156978,1157034..1157159))	Theileria annulata	3862863
TA11030	CDS	TA11030	NC_011098.1	1158109	1159743	D	Tap579b07.q1c.C.cand.2 - score = 34.16; SMART pfam:CAF1 (PF04857) at aa 8-240, E()=1.20e-116; mRNA turnover/deadenylation component (POP2 homologue), putative	1158109..1159743	Theileria annulata	3862862
TA11020	CDS	TA11020	NC_011098.1	1161926	1162219	D	Tap579b07.q1c.C.cand.3 - score = 9.75; 1 probable transmembrane helix predicted for TA11020 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA11020 by SignalP 2.0 HMM (Signal peptide probability 0.985, signal anchor probability 0.014) with cleavage site probability 0.869 between residues 23 and 24; uncharacterized protein	join(1161926..1162090,1162121..1162219)	Theileria annulata	3862860
TA11015	CDS	TA11015	NC_011098.1	1162530	1165873	D	Tap579b07.q1c.C.cand.4 - score = 43.90; SMART S1 (SM00316) at aa 598-671, 7.80e-02; 813-884, E()=6.70e+00; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA11015 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA11015 by SignalP 2.0 HMM (Signal peptide probability 0.622, signal anchor probability 0.327) with cleavage site probability 0.170 between residues 15 and 16; uncharacterized protein	join(1162530..1163436,1163600..1163819,1163876..1164670,1164834..1165410,1165476..1165625,1165661..1165873)	Theileria annulata	3862859
TA11010	CDS	TA11010	NC_011098.1	1166012	1168561	R	Tap579b07.q1c.cand.148 - score = 52.44; SMART pfam:UPF0004 (PF00919) at aa 316-401, E()=1.70-31; Elp3 (SM00729) at aa 459-677, E()=1.32e-26; 1 probable transmembrane helix predicted for TA11010 by TMHMM2.0 at aa 7-29; uncharacterized protein	complement(join(1166012..1166304,1166348..1166676,1166799..1166984,1167014..1167264,1167296..1168248,1168321..1168561))	Theileria annulata	3862858
TA11005	CDS	TA11005	NC_011098.1	1168895	1169893	D	Tap579b07.q1c.C.cand.5 - score = 15.89; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11005 by SignalP 2.0 HMM (Signal peptide probability 0.909, signal anchor probability 0.064) with cleavage site probability 0.808 between residues 20 and 21; uncharacterized protein	1168895..1169893	Theileria annulata	3862857
TA11000	CDS	TA11000	NC_011098.1	1169895	1172831	R	Tap579b07.q1c.cand.147 - score = 61.59; SMART 9 transmembrane domains at aa 585-607, 614-636, 651-668, 677-699, 719-741, 754-772, 811-833, 854-876 and 886-908; 9 probable transmembrane helices predicted for TA11000 by TMHMM2.0 at aa 585-607, 614-636, 651-668, 677-699, 719-741, 754-772, 811-833, 854-876 and 886-908; Tpr-related protein family member, putative	complement(1169895..1172831)	Theileria annulata	3862856
TA10995	CDS	TA10995	NC_011098.1	1172992	1176898	R	Tap579b07.q1c.cand.146 - score = 89.07; SMART pfam:tRNA-synt_1 (PF00133) at aa 13-799, E()=1.10e-06; leucyl-tRNA synthetase, putative	complement(join(1172992..1173394,1173424..1173552,1173582..1173720,1173802..1174871,1174935..1175182,1175248..1175697,1175742..1176530,1176564..1176613,1176646..1176898))	Theileria annulata	3862855
TA10990	CDS	TA10990	NC_011098.1	1177089	1178033	D	Tap579b07.q1c.C.cand.6 - score = 10.11; SMART 3 pfam:mito_carr (PF00153) at aa 24-118, E()=2.00e-03; 119-217, E()=5.40e-04; 221-313, E()=7.50e-05; mitochondrial carrier protein, putative	1177089..1178033	Theileria annulata	3862854
TA10985	CDS	TA10985	NC_011098.1	1178116	1180258	R	Tap579b07.q1c.cand.145 - score = 152.29; SMART pfam:Cullin (PF00888) at aa 1-668, E()=6.30e-04; cullin, putative	complement(join(1178116..1179390,1179420..1179581,1179612..1179869,1179923..1180258))	Theileria annulata	3862853
TA10980	CDS	TA10980	NC_011098.1	1180798	1181886	R	Tap579b07.q1c.cand.145 - score = 152.29; SMART 1 transmembrane domain at aa 17-39; 1 probable transmembrane helix predicted for TA10980 by TMHMM2.0 at aa 17-39; uncharacterized protein	complement(1180798..1181886)	Theileria annulata	3862852
TA10975	CDS	TA10975	NC_011098.1	1181900	1186336	R	Tap579b07.q1c.cand.145 - score = 152.29; uncharacterized protein	complement(1181900..1186336)	Theileria annulata	3862851
TA10960	CDS	TA10960	NC_011098.1	1186776	1188018	D	SMART pfam:HesB-like (PF01521) at aa 201-293, E()=7.40e-11; 1 probable transmembrane helix predicted for TA10960 by TMHMM2.0 at aa 107-129; HesB-family member protein, putative	join(1186776..1186839,1186959..1187376,1187400..1187639,1187733..1188018)	Theileria annulata	3862848
TA10955	CDS	TA10955	NC_011098.1	1188020	1190106	R	Tap579b07.q1c.cand.144 - score = 49.40; SMART Pept_C1 (SM00645) at aa 219-467, E()=3.24e-12; Signal peptide predicted for TA10955 by SignalP 2.0 HMM (Signal peptide probability 0.913, signal anchor probability 0.000) with cleavage site probability 0.697 between residues 15 and 16; GPI-Anchor Signal predicted for TA10955 by DGPI v2.04, no cleavage site predicted; papain-family cysteine protease, putative	complement(join(1188020..1188454,1188543..1188672,1188704..1188864,1188900..1189048,1189078..1189262,1189345..1189451,1189486..1190106))	Theileria annulata	3862847
TA10950	CDS	TA10950	NC_011098.1	1190211	1192403	R	Tap579b07.q1c.cand.143 - score = 40.41; SMART pfam:RICH (PF05062) at aa 386-468, E()=8.30e-02; uncharacterized protein	complement(1190211..1192403)	Theileria annulata	3862846
TA10945	CDS	TA10945	NC_011098.1	1193208	1193568	D	Tap579b07.q1c.C.cand.9 - score = 14.51; SMART pfam:UCR_UQCRX_QCR9 (PF05365) at aa 38-94, E()=3.30e-03; 1 probable transmembrane helix predicted for TA10945 by TMHMM2.0 at aa 52-71; uncharacterized protein	join(1193208..1193326,1193362..1193485,1193515..1193568)	Theileria annulata	3862845
TA10940	CDS	TA10940	NC_011098.1	1193613	1194803	R	Tap579b07.q1c.cand.142 - score = 25.73; uncharacterized protein	complement(1193613..1194803)	Theileria annulata	3862844
TA10935	CDS	TA10935	NC_011098.1	1195725	1196914	D	Tap579b07.q1c.C.cand.10 - score = 22.61; uncharacterized protein	join(1195725..1196510,1196564..1196914)	Theileria annulata	3862843
TA10930	CDS	TA10930	NC_011098.1	1196969	1197972	R	uncharacterized protein	complement(join(1196969..1197136,1197169..1197315,1197367..1197499,1197524..1197972))	Theileria annulata	3862842
TA10925	CDS	TA10925	NC_011098.1	1198075	1199409	R	Tap579b07.q1c.cand.140 - score = 30.20; SMART 1 transmembrane domain at aa 21-43; pfam:adh_short (PF00106) at aa 104-379, E()=3.30e-26; 1 probable transmembrane helix predicted for TA10925 by TMHMM2.0 at aa 21-43; Signal anchor predicted for TA10925 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.978) with cleavage site probability 0.000 between residues 33 and 34; short-chain dehydrogenase/reductase (SDR family member), putative	complement(join(1198075..1198225,1198258..1198419,1198449..1198847,1198877..1199012,1199043..1199409))	Theileria annulata	3862841
TA10920	CDS	TA10920	NC_011098.1	1199641	1201035	R	Tap579b07.q1c.cand.139 - score = 31.51; SMART 2 transmembrane domains at aa 53-75 and 96-118; pfam:adh_short (PF00106) at aa 137-398, E()=1.20e-20; 2 probable transmembrane helices predicted for TA10920 by TMHMM2.0 at aa 53-75 and 96-118; short-chain dehydrogenase/reductase (SDR family member), putative	complement(join(1199641..1199788,1199819..1199980,1200012..1200407,1200437..1200572,1200603..1201035))	Theileria annulata	3862840
TA10915	CDS	TA10915	NC_011098.1	1201314	1202953	R	Tap579b07.q1c.cand.138 - score = 49.29; SMART pfam:PK (PF00224) at aa 34-382, E()=2.50e-187; pfam:PK_C (PF02887) at aa 396-511, E()=8.00e-23; pyruvate kinase, putative	complement(join(1201314..1201947,1202014..1202734,1202767..1202953))	Theileria annulata	3862839
TA10910	CDS	TA10910	NC_011098.1	1203388	1205097	R	Tap579b07.q1c.cand.137 - score = 53.70; SMART 3 pfam:Kelch (PF01344) domains at aa 119-168, E()=1.80e-02; 173-222, E()=8.30e-04; 372-421, E()=5.20e-05; uncharacterized protein	complement(join(1203388..1203559,1203589..1203745,1203803..1203858,1203887..1204010,1204042..1204138,1204168..1204241,1204272..1204458,1204494..1204644,1204673..1204831,1204871..1205097))	Theileria annulata	3862838
TA10905	CDS	TA10905	NC_011098.1	1205201	1207963	R	Tap579b07.q1c.cand.136 - score = 60.57; SMART 9 ANK (SM00248) domains at aa 556-585, E()=5.19e+02; 589-619, E()=9.92e+02; 622-651, E()=7.71e-02; 658-687, E()=2.32e-05; 724-753, E()=1.19e+03; 758-787, E()=3.36e+02; 791-820, E()=5.62e-04; 824-853, E()=9.05e-08; 858-888, E()=1.23e+00; uncharacterized protein	complement(1205201..1207963)	Theileria annulata	3862837
TA10900	CDS	TA10900	NC_011098.1	1208479	1209073	D	Tap579b07.q1c.C.cand.11 - score = 10.53; SMART pfam:NifU-like (PF01106) at aa 95-165, E()=3.70e-23; uncharacterized protein	join(1208479..1208848,1208904..1209073)	Theileria annulata	3862836
TA10895	CDS	TA10895	NC_011098.1	1209112	1210841	R	uncharacterized protein	complement(join(1209112..1209259,1209292..1210841))	Theileria annulata	3862835
TA10890	CDS	TA10890	NC_011098.1	1211408	1213227	D	Tap579b07.q1c.C.cand.12 - score = 44.76; SMART pfam:GTP_EFTU (PF00009) at aa 95-328, E()=2.40e-30; translation elongation factor 1-alpha, putative	join(1211408..1212358,1212414..1212771,1212803..1213227)	Theileria annulata	3862834
TA10885	CDS	TA10885	NC_011098.1	1214229	1220468	D	Tap579b07.q1c.C.cand.13 - score = 149.33; SMART overlapping domains; PHD (SM00249) at aa 7-69, E()=2.83e-04; 82-129, E()=4.22e-12; 157-217, E()=6.50e-04; 1403-1462, E()=7.24e-02; 1463-1530, E()=1.71e+01; RING (SM00184) at aa 8-68, E()=1.50e+00; 83-128, E()=1.45e-01; 158-216, E()=4.62e+00; ZnF_NFX (SM00438) at aa 158-175, E()=0.00e+00; DEXDc (SM00487) at aa 340-542, E()=1.23e-21; HELICc (SM00490) at aa 1011-1095, E()=1.83e-20; SWI/SNF-related chromatin remodelling factor (ISWI homologue), putative	join(1214229..1214298,1214366..1214908,1214935..1215186,1215279..1215524,1215593..1216107,1216176..1220468)	Theileria annulata	3862833
TA10880	CDS	TA10880	NC_011098.1	1220754	1221549	R	SMART 1 transmembrane domain at aa 182-204; 1 probable transmembrane helix predicted for TA10880 by TMHMM2.0 at aa 182-204; Signal peptide predicted for TA10880 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.000) with cleavage site probability 0.748 between residues 17 and 18; N-acetylglucosaminyl-phosphatidylinositolde-N- ace tylase	complement(join(1220754..1220865,1220972..1221218,1221285..1221549))	Theileria annulata	3862832
TA10875	CDS	TA10875	NC_011098.1	1224035	1224831	D	SMART pfam:proteasome (PF00227) at aa 20-205, E()=1.30e-29; proteasome beta 3 subunit, putative	join(1224035..1224062,1224073..1224089,1224144..1224334,1224368..1224650,1224688..1224831)	Theileria annulata	3862831
TA10870	CDS	TA10870	NC_011098.1	1225193	1226932	D	Tap579b07.q1c.C.cand.15 - score = 33.72; uncharacterized protein	1225193..1226932	Theileria annulata	3862830
TA10865	CDS	TA10865	NC_011098.1	1227087	1228826	R	Tap579b07.q1c.cand.133 - score = 26.83; SMART 10 transmembrane domains at aa 21-40, 109-131, 143-165, 170-192, 205-227, 330-352, 365-387, 442-464, 483-505 and 515-537; 10 probable transmembrane helices predicted for TA10865 by TMHMM2.0 at aa 21-40, 109-131, 143-165, 170-192, 205-227, 330-352, 365-387, 442-464, 483-505 and 515-537; Signal anchor predicted for TA10865 by SignalP 2.0 HMM (Signal peptide probability 0.013, signal anchor probability 0.666) with cleavage site probability 0.003 between residues 33 and 34; Tpr-related protein family member, putative	complement(1227087..1228826)	Theileria annulata	3862829
TA10850	CDS	TA10850	NC_011098.1	1229011	1230629	R	Tap579b07.q1c.cand.132 - score = 44.89; SMART pfam:isodh (PF00180) at aa 65-453, E()=3.00e-81; isocitrate dehydrogenase, putative	complement(join(1229011..1229265,1229304..1229415,1229467..1230058,1230088..1230175,1230226..1230303,1230375..1230629))	Theileria annulata	3862826
TA10845	CDS	TA10845	NC_011098.1	1231183	1234135	D	SMART pfam:Metallophos (PF00149) at aa 264-524, E()=2.40e-15; pfam:Mre11_DNA_bind (PF04152) at aa 525-738, E()=2.00e-14; double-strand break repair protein, putative	join(1231183..1231393,1231458..1232237,1232280..1232495,1232525..1232583,1232613..1233173,1233203..1233342,1233373..1233437,1233466..1233659,1233691..1233828,1233858..1233991,1234021..1234135)	Theileria annulata	3862825
TA10840	CDS	TA10840	NC_011098.1	1234290	1236062	D	Tap579b07.q1c.C.cand.19 - score = 67.17; SMART pfam:tRNA-synt_2d (PF02409) at aa 248-504, E()=1.40e-98; phenylalanine-tRNA synthetase, putative	join(1234290..1234580,1234638..1235028,1235058..1235173,1235206..1235313,1235345..1235454,1235483..1235576,1235608..1235700,1235730..1236062)	Theileria annulata	3862824
TA10835	CDS	TA10835	NC_011098.1	1236851	1237268	R	Tap579b07.q1c.cand.131 - score = 15.98; SMART pfam:TBCA (PF02970) at aa 6-94, E()=4.50e-04; tubulin binding cofactor, putative	complement(join(1236851..1237099,1237152..1237268))	Theileria annulata	3862823
TA10830	CDS	TA10830	NC_011098.1	1237446	1238016	R	SMARTpfam:Acetyltransf (PF00583) at aa 51-133, E()=1.80e-14; acetyltransferase, putative	complement(join(1237446..1237726,1237824..1238016))	Theileria annulata	3862822
TA10825	CDS	TA10825	NC_011098.1	1238152	1238618	R	2 probable transmembrane helices predicted for TA10825 by TMHMM2.0 at aa 5-27 and 73-92; Signal peptide predicted for TA10825 by SignalP 2.0 HMM (Signal peptide probability 0.967, signal anchor probability 0.001) with cleavage site probability 0.514 between residues 18 and 19; uncharacterized protein	complement(join(1238152..1238255,1238266..1238383,1238425..1238554,1238605..1238618))	Theileria annulata	3862821
TA10820	CDS	TA10820	NC_011098.1	1239880	1240660	R	mRNA cleavage factor subunit, putative	complement(join(1239880..1240038,1240139..1240660))	Theileria annulata	3862820
TA10815	CDS	TA10815	NC_011098.1	1240779	1244486	R	Tap579b07.q1c.cand.126 - score = 93.50; SMART FN2 (SM00059) at aa 147-200, E()=6.51e-01; 1 probable transmembrane helix predicted for TA10815 by TMHMM2.0 at aa 7-26; uncharacterized protein	complement(join(1240779..1241066,1241096..1241208,1241250..1241769,1241799..1241887,1241920..1242036,1242071..1242220,1242253..1242740,1242899..1243220,1243251..1243645,1243679..1243790,1243829..1243912,1243952..1244486))	Theileria annulata	3862819
TA10810	CDS	TA10810	NC_011098.1	1244634	1245328	R	Tap579b07.q1c.cand.125 - score = 16.35; uncharacterized protein	complement(join(1244634..1244837,1244885..1245328))	Theileria annulata	3862818
TA10805	CDS	TA10805	NC_011098.1	1245694	1246722	R	Tap579b07.q1c.cand.124 - score = 8.33; SMART pfam:mito_carrier (PF00153) at aa 175-259, E()=7.80e-02; uncharacterized protein	complement(1245694..1246722)	Theileria annulata	3862817
TA10800	CDS	TA10800	NC_011098.1	1247375	1248559	D	Tap579b07.q1c.C.cand.20 - score = 15.89; SMART 2 transmembrane domains at aa 59-81 and 118-140; pfam:PAP2 (PF01569) at aa 166-278, E()=8.30e-02; 6 probable transmembrane helices predicted for TA10800 by TMHMM2.0 at aa 59-81, 118-140, 147-169, 184-206, 227-246 and 251-270; uncharacterized protein	1247375..1248559	Theileria annulata	3862816
TA10795	CDS	TA10795	NC_011098.1	1249084	1250244	D	Tap579b07.q1c.C.cand.21 - score = 79.92; SMART 2 transmembrane domains at aa 59-81 and 114-133; pfam:PAP2 (PF01569) at aa 158-271, E()=7.10e-02; 6 probable transmembrane helices predicted for TA10795 by TMHMM2.0 at aa 59-81, 114-133, 146-168, 197-219, 224-243 and 253-275; uncharacterized protein	1249084..1250244	Theileria annulata	3862815
TA10790	CDS	TA10790	NC_011098.1	1250393	1253319	D	SMART pfam:AAA (SM00382) at aa 256-386, E()=2.17e-03; replication factor C, putative	join(1250393..1250417,1250449..1250938,1250969..1251155,1251186..1251550,1251580..1251810,1251858..1252102,1252140..1252376,1252454..1252570,1252612..1252748,1252831..1253319)	Theileria annulata	3862814
TA10785	CDS	TA10785	NC_011098.1	1253419	1254210	R	Tap579b07.q1c.cand.123 - score = 15.57; SMART 5 transmembrane domains at aa 60-79, 99-121, 126-143, 148-170 and 177-199; 5 probable transmembrane helices predicted for TA10785 by TMHMM2.0 at aa 60-79, 99-121, 126-143, 148-170 and 177-199; uncharacterized protein	complement(join(1253419..1253773,1253803..1254009,1254044..1254210))	Theileria annulata	3862813
TA10780	CDS	TA10780	NC_011098.1	1254657	1255220	D	Tap579b07.q1c.C.cand.22 - score = 12.70; SMART 1 transmembrane domain at aa 24-46; 1 probable transmembrane helix predicted for TA10780 by TMHMM2.0 at aa 24-46; uncharacterized protein	1254657..1255220	Theileria annulata	3862812
TA10775	CDS	TA10775	NC_011098.1	1255333	1255882	D	Tap579b07.q1c.C.cand.23 - score = 10.51; SMART pfam:HesB-like (PF01521) at aa 53-159, E()=4.30e-22; HesB family member, putative	join(1255333..1255543,1255611..1255882)	Theileria annulata	3862811
TA10770	CDS	TA10770	NC_011098.1	1255944	1257546	R	Tap579b07.q1c.cand.122 - score = 33.82; uncharacterized protein	complement(join(1255944..1256490,1256523..1256617,1256647..1257224,1257258..1257546))	Theileria annulata	3862810
TA10765	CDS	TA10765	NC_011098.1	1257632	1257856	D	Tap579b07.q1c.C.cand.24 - score = 9.14; uncharacterized protein	join(1257632..1257763,1257794..1257856)	Theileria annulata	3862809
TA10760	CDS	TA10760	NC_011098.1	1257981	1260254	R	Tap579b07.q1c.cand.121 - score = 43.18; SMART pfam:Sec1 (PF00995) at aa 95-757, E()=1.70e-06; vacuolar protein sorting/secretion protein, putative	complement(1257981..1260254)	Theileria annulata	3862808
TA10755	CDS	TA10755	NC_011098.1	1260610	1261926	R	Tap579b07.q1c.cand.120 - score = 24.78; Signal peptide predicted for TA10755 by SignalP 2.0 HMM (Signal peptide probability 0.813, signal anchor probability 0.000) with cleavage site probability 0.804 between residues 22 and 23; uncharacterized protein	complement(join(1260610..1260787,1260835..1261523,1261557..1261771,1261863..1261926))	Theileria annulata	3862807
TA10740	CDS	TA10740	NC_011098.1	1262018	1263067	R	Tap579b07.q1c.cand.119 - score = 26.26; Signal peptide predicted for TA10740 by SignalP 2.0 HMM (Signal peptide probability 0.976, signal anchor probability 0.002) with cleavage site probability 0.295 between residues 25 and 26; GPI-Anchor Signal predicted for TA10740 by DGPI v2.04 with cleavage site probability 0.156 near 297; uncharacterized protein	complement(join(1262018..1262155,1262195..1263067))	Theileria annulata	3862804
TA10735	CDS	TA10735	NC_011098.1	1263634	1265628	R	Tap579b07.q1c.cand.118 - score = 36.27; SMART ZnF_GATA (SM00401) at aa 410-458, E()=3.23e-05; 1 probable transmembrane helix predicted for TA10735 by TMHMM2.0 at aa 38-57; GATA-specific transcription factor, putative	complement(join(1263634..1264983,1265018..1265069,1265387..1265628))	Theileria annulata	3862653
TA10730	CDS	TA10730	NC_011098.1	1266233	1267143	D	Tap579b07.q1c.C.cand.25 - score = 28.18; SMART RAB (SM00175) at aa 11-178, E()=1.04e-44; small_GTPase (SM00010) at aa 27-202, E()=1.25e-01; Rab GTPase, putative	join(1266233..1266345,1266379..1266426,1266465..1266504,1266538..1266633,1266665..1266796,1266825..1266893,1266922..1266962,1267056..1267143)	Theileria annulata	3862652
TA10725	CDS	TA10725	NC_011098.1	1267284	1269943	R	Tap579b07.q1c.cand.117 - score = 60.73; SMART STYKc (SM00221) at aa 326-796, E()=5.34e-01; serine/threonine protein kinase, putative	complement(join(1267284..1267472,1267536..1267595,1267709..1267833,1267863..1267946,1268005..1269943))	Theileria annulata	3862651
TA10720	CDS	TA10720	NC_011098.1	1270350	1273416	D	Tap579b07.q1c.C.cand.26 - score = 78.86; SMART HATPase_c (SM00387) at aa 152-314, E()=1.23e-02; pfam:HSP90 (PF00183) at aa 316-839, E()=4.90e-137; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA10720 by TMHMM2.0 at aa 21-40; Signal anchor predicted for TA10720 by SignalP 2.0 HMM (Signal peptide probability 0.094, signal anchor probability 0.892) with cleavage site probability 0.042 between residues 39 and 40; heat shock protein (HSP90 homologue), putative	join(1270350..1271048,1271148..1271465,1271636..1271833,1271890..1273416)	Theileria annulata	3862650
TA10715	CDS	TA10715	NC_011098.1	1273675	1276074	D	Tap579b07.q1c.C.cand.27 - score = 55.70; uncharacterized protein	join(1273675..1275061,1275092..1276074)	Theileria annulata	3862649
TA10710	CDS	TA10710	NC_011098.1	1276257	1281799	D	SMART RPOLA_N (SM00663) at aa 304-610, E()=1.84e-156; pfam:RNA_pol_Rpb1_4 (PF050000) at aa 814-922, E()=1.80e-42; pfam:RNA_pol_Rpb1_5 (PF04998) at aa 929-1600, E()=2.00e-64; DNA-directed RNA polymerase III largest subunit (RPC homologue), putative	join(1276257..1276658,1276705..1276939,1276996..1277303,1277377..1277460,1277491..1277674,1277729..1279410,1279466..1279691,1279760..1280280,1280309..1280908,1280958..1281004,1281044..1281368,1281467..1281799)	Theileria annulata	3862648
TA10705	CDS	TA10705	NC_011098.1	1281967	1283655	R	Tap579b07.q1c.cand.116 - score = 28.62; Signal peptide predicted for TA10705 by SignalP 2.0 HMM (Signal peptide probability 0.982, signal anchor probability 0.000) with cleavage site probability 0.826 between residues 19 and 20; uncharacterized protein	complement(1281967..1283655)	Theileria annulata	3862647
TA10700	CDS	TA10700	NC_011098.1	1283836	1284876	D	Tap579b07.q1c.C.cand.30 - score = 57.14; SMART pfam:Ribosomal_S15 (PF00312) at aa 173-259, E()=7.60e-11; 30S ribosomal protein S15, putative	join(1283836..1284139,1284175..1284383,1284414..1284557,1284592..1284641,1284675..1284876)	Theileria annulata	3862646
TA10695	CDS	TA10695	NC_011098.1	1284967	1285951	D	Tap579b07.q1c.C.cand.30 - score = 57.14; uncharacterized protein	join(1284967..1285668,1285712..1285951)	Theileria annulata	3862645
TA10685	CDS	TA10685	NC_011098.1	1286019	1286768	D	uncharacterized protein	join(1286019..1286335,1286420..1286768)	Theileria annulata	3862643
TA10680	CDS	TA10680	NC_011098.1	1287039	1287404	D	Tap579b07.q1c.C.cand.31 - score = 12.22; SMART 1 transmembrane domain at aa 59-81; 1 probable transmembrane helix predicted for TA10680 by TMHMM2.0 at aa 59-81; uncharacterized protein	join(1287039..1287309,1287340..1287404)	Theileria annulata	3862642
TA10675	CDS	TA10675	NC_011098.1	1287484	1287741	D	Tap579b07.q1c.C.cand.32 - score = 8.21; SMART ZnF_AN1 (SM00154) at aa 27-73, E()=7.53e-03; uncharacterized protein	1287484..1287741	Theileria annulata	3862641
TA10670	CDS	TA10670	NC_011098.1	1287746	1290057	R	Tap579b07.q1c.cand.115 - score = 44.55; SMART DEXDc (SM00487) at aa 72-474, E()=5.53e-06; HELICc (SM00490) at aa 551-626, E()=1.50e-07; DEAD-family helicase, putative	complement(join(1287746..1288766,1288856..1289729,1289760..1290057))	Theileria annulata	3862640
TA10665	CDS	TA10665	NC_011098.1	1290310	1290989	D	Tap579b07.q1c.C.cand.33 - score = 21.48; uncharacterized protein	join(1290310..1290413,1290442..1290471,1290501..1290573,1290717..1290989)	Theileria annulata	3862639
TA10660	CDS	TA10660	NC_011098.1	1291373	1292794	D	Tap579b07.q1c.C.cand.34 - score = 11.76; SMART 10 transmembrane domains at aa 16-38, 61-83, 90-112, 122-141, 148-170, 180-202, 254-276, 286-308, 321-343 and 358-380; 10 probable transmembrane helices predicted for TA10660 by TMHMM2.0 at aa 16-38, 61-83, 90-112, 122-141, 148-170, 180-202, 254-276, 286-308, 321-343 and 358-380; uncharacterized protein	1291373..1292794	Theileria annulata	3862638
TA10655	CDS	TA10655	NC_011098.1	1293200	1295863	D	10 probable transmembrane helices predicted for TA10655 by TMHMM2.0 at aa 13-35, 62-81, 102-119, 129-151, 187-209, 668-690, 703-722, 737-759, 766-788 and 810-828; uncharacterized protein	1293200..1295863	Theileria annulata	3862637
TA10650	CDS	TA10650	NC_011098.1	1296217	1297725	D	Tap579b07.q1c.C.cand.36 - score = 22.35; SMART 10 transmembrane domains at aa 32-51, 66-88, 100-122, 127-149, 156-178, 193-212, 316-335, 350-372, 385-407 and 427-449; 10 probable transmembrane helices predicted for TA10650 by TMHMM2.0 at aa 32-51, 66-88, 100-122, 127-149, 156-178, 193-212, 316-335, 350-372, 385-407 and 427-449; uncharacterized protein	1296217..1297725	Theileria annulata	3862636
TA10645	CDS	TA10645	NC_011098.1	1298178	1299725	D	Tap579b07.q1c.C.cand.37 - score = 18.55; SMART 11 transmembrane domains at aa 24-46, 80-102, 107-129, 138-160, 199-221, 300-322, 337-356, 368-390, 410-432, 445-467 and 482-504; 11 probable transmembrane helices predicted for TA10645 by TMHMM2.0 at aa 24-46, 80-102, 107-129, 138-160, 199-221, 300-322, 337-356, 368-390, 410-432, 445-467 and 482-504; Signal anchor predicted for TA10645 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.926) with cleavage site probability 0.000 between residues 47 and 48; uncharacterized protein	1298178..1299725	Theileria annulata	3862635
TA10640	CDS	TA10640	NC_011098.1	1300114	1301547	D	Tap579b07.q1c.C.cand.38 - score = 17.60; SMART 8 transmembrane domains at aa 65-87, 92-114, 121-143, 184-206, 268-290, 300-318, 331-353 and 373-395; 8 probable transmembrane helices predicted for TA10640 by TMHMM2.0 at aa 65-87, 92-114, 121-143, 184-206, 268-290, 300-318, 331-353 and 373-395; uncharacterized protein	1300114..1301547	Theileria annulata	3862722
TA10635	CDS	TA10635	NC_011098.1	1301593	1304315	R	SMART 1 transmembrane domain at aa 12-31; 1 probable transmembrane helix predicted for TA10635 by TMHMM2.0 at aa 12-31; uncharacterized protein	complement(join(1301593..1301769,1301800..1301935,1301974..1302141,1302182..1302231,1302253..1302813,1302843..1302928,1302959..1303025,1303055..1303158,1303204..1303574,1303604..1303748,1303814..1304315))	Theileria annulata	3862721
TA10630	CDS	TA10630	NC_011098.1	1304983	1306245	D	Tap579b07.q1c.C.cand.39 - score = 25.01; SMART S_TKc (SM00220) at aa 127-412, E()=1.03e-75; casein kinase II, alpha subunit, putative	1304983..1306245	Theileria annulata	3862720
TA10625	CDS	TA10625	NC_011098.1	1306472	1307744	D	Tap579b07.q1c.C.cand.40 - score = 35.83; SMART pfam:CoA_binding (PF02629) at aa 32-150, E()=1.40e-58; pfam:ligase-CoA (PF00549) at aa 170-318, E()=3.20e-60; Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor	join(1306472..1306510,1306548..1306652,1306704..1306841,1306893..1307166,1307219..1307380,1307442..1307573,1307605..1307744)	Theileria annulata	3862719
TA10620	CDS	TA10620	NC_011098.1	1307894	1309740	D	SMART pfam:UPF0027 (PF01139) at aa 34-515, E()=1.00e-241; uncharacterized protein	join(1307894..1308170,1308214..1308441,1308470..1308690,1308723..1309103,1309134..1309347,1309405..1309487,1309560..1309634,1309672..1309740)	Theileria annulata	3862718
TA10615	CDS	TA10615	NC_011098.1	1310079	1310930	D	Tap579b07.q1c.C.cand.42 - score = 28.14; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA10615 by TMHMM2.0 at aa 5-27; uncharacterized protein	join(1310079..1310121,1310162..1310289,1310352..1310930)	Theileria annulata	3862717
TA10610	CDS	TA10610	NC_011098.1	1311022	1312816	R	Tap579b07.q1c.cand.111 - score = 40.31; SMART AAA (SM00382) at aa 101-403, E()=9.65e-10; RuvB-like DNA repair helicase, putative	complement(join(1311022..1311282,1311313..1311417,1311469..1311717,1311782..1311942,1311976..1312116,1312185..1312448,1312513..1312816))	Theileria annulata	3862716
TA10605	CDS	TA10605	NC_011098.1	1313319	1316270	D	Tap579b07.q1c.C.cand.43 - score = 49.36; SMART CysPc (SM00230) at aa 35-406, E()=3.49e-13; uncharacterized protein	join(1313319..1314270,1314301..1314470,1314521..1315169,1315228..1316270)	Theileria annulata	3862715
TA10600	CDS	TA10600	NC_011098.1	1316515	1328998	R	Tap579b07.q1c.cand.110 - score = 251.52; SMART pfam:FAT (PF02259) at aa 2595-3205, E()=7.80e-05; PIKc (SM00146) at aa 3491-3865, E()=8.43e-02; uncharacterized protein	complement(join(1316515..1318897,1318975..1319179,1319248..1319643,1319715..1320024,1320108..1321406,1321456..1323679,1323708..1323799,1323826..1324563,1324653..1324983,1325018..1327566,1327620..1327905,1327937..1328065,1328097..1328262,1328293..1328421,1328451..1328837,1328881..1328998))	Theileria annulata	3862714
TA10595	CDS	TA10595	NC_011098.1	1329408	1330973	D	Tap579b07.q1c.C.cand.44 - score = 32.50; SMART 7 WD40 (SM00320) domains at aa 198-237, E()=5.26e-08; 240-279, E()=1.49e-07; 282-321, E()=1.96e-07; 324-363, E()=6.04e-08; 368-404, E()=4.02e-04; 407-448, E()=4.38e-05; 460-498, E()=1.79e-01; uncharacterized protein	1329408..1330973	Theileria annulata	3862713
TA10590	CDS	TA10590	NC_011098.1	1331136	1331663	R	Tap579b07.q1c.cand.109 - score = 9.36; SMART 4 transmembrane domains at 13-35, 40-62, 75-97 and 112-134; 4 probable transmembrane helices predicted for TA10590 by TMHMM2.0 at aa 13-35, 40-62, 75-97 and 112-134; uncharacterized protein	complement(1331136..1331663)	Theileria annulata	3862712
TA10580	CDS	TA10580	NC_011098.1	1332805	1334373	R	Tap579b07.q1c.cand.108 - score = 45.19; SMART 2 KH (SM00322) domains at aa 269-343, E()=8.52e-02; 362-433, E()=7.42e-01; uncharacterized protein	complement(join(1332805..1333688,1333720..1334061,1334092..1334169,1334200..1334248,1334281..1334373))	Theileria annulata	3862710
TA10575	CDS	TA10575	NC_011098.1	1335500	1335880	R	uncharacterized protein	complement(join(1335500..1335628,1335669..1335767,1335803..1335880))	Theileria annulata	3862709
TA10570	CDS	TA10570	NC_011098.1	1336134	1337473	R	Tap579b07.q1c.cand.106 - score = 37.48; SMART 1 transmembrane domain at aa 97-119; 2 probable transmembrane helices predicted for TA10570 by TMHMM2.0 at aa 7-29 and 97-119; uncharacterized protein	complement(join(1336134..1336314,1336360..1336547,1336597..1336665,1336696..1336791,1336822..1336966,1336998..1337181,1337234..1337335,1337374..1337473))	Theileria annulata	3862708
TA10565	CDS	TA10565	NC_011098.1	1337653	1337994	R	Tap579b07.q1c.cand.105 - score = 9.84; SMART RING (SM00184) at aa 30-90, E()=1.11e-01; ZnF_NFX (SM00438) at aa 33-46, E()=0.00e+00; uncharacterized protein	complement(join(1337653..1337823,1337860..1337994))	Theileria annulata	3862707
TA10560	CDS	TA10560	NC_011098.1	1338227	1339479	D	Tap579b07.q1c.C.cand.45 - score = 27.45; SMART 4 WD40 (SM00320) domains at aa 52-95, E()=3.98e+00; 239-278, E()=2.48e-04; 282-327, E()=7.13e+00; 355-395, E()=5.11e+01; uncharacterized protein	join(1338227..1338607,1338637..1339479)	Theileria annulata	3862706
TA10555	CDS	TA10555	NC_011098.1	1339507	1341098	D	SMART 5 transmembrane domains at aa 170-192, 205-239, 317-339, 346-368 and 388-410; 5 probable transmembrane helices predicted for TA10555 by TMHMM2.0 at aa 170-192, 205-239, 317-339, 346-368 and 388-410; uncharacterized protein	join(1339507..1339778,1339829..1339895,1339925..1340055,1340112..1340204,1340236..1340379,1340410..1340510,1340525..1340627,1340667..1340890,1340983..1341098)	Theileria annulata	3862705
TA10550	CDS	TA10550	NC_011098.1	1341185	1343482	D	Tap579b07.q1c.C.cand.47 - score = 53.95; SMART pfam:efhand (PF00036) at aa 477-505, E()=3.40e-06; uncharacterized protein	join(1341185..1341840,1341873..1342068,1342099..1342243,1342275..1342332,1342363..1342466,1342497..1342689,1342732..1342801,1342998..1343133,1343178..1343345,1343376..1343482)	Theileria annulata	3862704
TA10545	CDS	TA10545	NC_011098.1	1343910	1344221	D	Tap579b07.q1c.C.cand.48 - score = 31.86; SMART H4 (SM00417) at aa 16-90, E()=1.33e-26; histone H4, putative	1343910..1344221	Theileria annulata	3862703
TA10540	CDS	TA10540	NC_011098.1	1344356	1345660	D	Tap579b07.q1c.C.cand.48 - score = 31.86; SMART pfam:TIM (PF00121) at aa 118-365, E()=8.70e-21; 1 probable transmembrane helix predicted for TA10540 by TMHMM2.0 at aa 21-43; triosephosphate isomerase, putative	join(1344356..1344532,1344574..1344852,1344882..1345034,1345063..1345125,1345156..1345231,1345263..1345331,1345362..1345660)	Theileria annulata	3862692
TA10535	CDS	TA10535	NC_011098.1	1345977	1346288	D	Tap579b07.q1c.C.cand.49 - score = 10.12; SMART H4 (SM00417) at aa 16-90, E()=1.33e-24; histone H4, putative	1345977..1346288	Theileria annulata	3862691
TA10525	CDS	TA10525	NC_011098.1	1346491	1348026	R	SMART STYKc (SM00221) at aa 58-345, E()=6.42e-04; 74-363, E()=3.84e-43; protein kinase, putative	complement(1346491..1348026)	Theileria annulata	3862689
TA10520	CDS	TA10520	NC_011098.1	1349049	1349758	R	Tap579b07.q1c.cand.103 - score = 29.42; SMART 3 EFh (SM00054) domains at aa 55-83, E()=7.52e-06; 91-119, E()=1.10e+01; 128-155, E()=1.55e+01; centrosome protein (centrin), putative	complement(join(1349049..1349203,1349233..1349277,1349310..1349457,1349486..1349758))	Theileria annulata	3862688
TA10515	CDS	TA10515	NC_011098.1	1350597	1351361	D	40s ribosomal protein s4, putative	1350597..1351361	Theileria annulata	3862687
TA10510	CDS	TA10510	NC_011098.1	1351414	1352387	R	Tap579b07.q1c.cand.102 - score = 51.72; SMART 5 EFh (SM00054) domains at aa 45-73, E()=7.93e-01; 81-109, E()=6.16e-02; 121-149, E()=5.53e+00; 158-186, E()=3.25e-01 and 192-220, E()=2.04e+00; concerned of calling too much for a function; Signal peptide predicted for TA10510 by SignalP 2.0 HMM (Signal peptide probability 0.706, signal anchor probability 0.000) with cleavage site probability 0.449 between residues 21 and 22; uncharacterized protein	complement(join(1351414..1351760,1351791..1351851,1351896..1352387))	Theileria annulata	3862686
TA10505	CDS	TA10505	NC_011098.1	1353000	1355120	R	SMART 9 transmembrane domains at aa 21-40, 73-90, 182-204, 219-238, 492-514, 524-546, 558-580, 585-607 and 628-650; 9 probable transmembrane helices predicted for TA10505 by TMHMM2.0 at aa 21-40, 73-90, 182-204, 219-238, 492-514, 524-546, 558-580, 585-607 and 628-650; uncharacterized protein	complement(1353000..1355120)	Theileria annulata	3862685
TA10500	CDS	TA10500	NC_011098.1	1355825	1358042	R	Tap579b07.q1c.cand.101 - score = 70.63; SMART pfam:HSP70 (PF00012) at aa 38-638, E()=0.00e+00; pfam:Hydantoinase_A (PF01968) at aa 157-411, E()=7.20e-02; pfam:UVR (PF02151) at aa 590-628, E()=1.00e-01; Signal peptide predicted for TA10500 by SignalP 2.0 HMM (Signal peptide probability 0.827, signal anchor probability 0.000) with cleavage site probability 0.784 between residues 26 and 27; heat-shock (HSP70 homologue) protein, putative	complement(join(1355825..1356345,1356417..1356581,1356649..1357680,1357755..1357904,1357943..1358042))	Theileria annulata	3862684
TA10495	CDS	TA10495	NC_011098.1	1358661	1358969	R	Tap579b07.q1c.cand.100 - score = 11.57; uncharacterized protein	complement(1358661..1358969)	Theileria annulata	3862683
TA10490	CDS	TA10490	NC_011098.1	1359613	1361192	D	Tap579b07.q1c.C.cand.51 - score = 20.16; uncharacterized protein	join(1359613..1359705,1359736..1359830,1360162..1360259,1360289..1360344,1360394..1360719,1360933..1360989,1361021..1361192)	Theileria annulata	3862682
TA10485	CDS	TA10485	NC_011098.1	1361502	1362958	R	Tap579b07.q1c.cand.99 - score = 24.21; uncharacterized protein	complement(join(1361502..1361642,1361670..1361789,1362007..1362066,1362109..1362367,1362554..1362649,1362734..1362815,1362853..1362958))	Theileria annulata	3862681
TA10480	CDS	TA10480	NC_011098.1	1363885	1364871	R	Tap579b07.q1c.cand.98 - score = 50.55; SMART DnaJ (SM00271) at aa 22-77, E()=5.14e-25; Signal peptide predicted for TA10480 by SignalP 2.0 HMM (Signal peptide probability 0.847, signal anchor probability 0.023) with cleavage site probability 0.449 between residues 20 and 21; molecular chaperone (DnaJ family), putative	complement(join(1363885..1364315,1364448..1364871))	Theileria annulata	3862680
TA10470	CDS	TA10470	NC_011098.1	1365138	1366127	R	Tap579b07.q1c.cand.98 - score = 50.55; SMART 2 transmembrane domains at aa 59-81 and 85-104; pfam:Acetyltransf (PF00583) at aa 198-276, E()=3.90e-10; 2 probable transmembrane helices predicted for TA10470 by TMHMM2.0 at aa 59-81 and 85-104; uncharacterized protein	complement(1365138..1366127)	Theileria annulata	3862678
TA10465	CDS	TA10465	NC_011098.1	1366906	1367784	D	Tap579b07.q1c.C.cand.52 - score = 26.60; SMART pfam:PGAM (PF00300) at aa 2-222, E()=1.50e-81; phosphoglycerate mutase, putative	join(1366906..1366976,1367006..1367146,1367175..1367784)	Theileria annulata	3862677
TA10460	CDS	TA10460	NC_011098.1	1368487	1373798	R	Tap579b07.q1c.cand.97 - score = 111.32; uncharacterized protein	complement(join(1368487..1369554,1369728..1373798))	Theileria annulata	3862676
TA10455	CDS	TA10455	NC_011098.1	1374518	1375213	D	Tap579b07.q1c.C.cand.53 - score = 16.65; uncharacterized protein	join(1374518..1374784,1374815..1375213)	Theileria annulata	3862675
TA10450	CDS	TA10450	NC_011098.1	1375220	1377280	R	Tap579b07.q1c.cand.96 - score = 70.12; SMART 1 transmembrane domain at aa 12-31; SEL1 (SM00671) at aa 86-125, E()=8.19e-02; 126-163, E()=1.75e-01; 289-324, E()=1.25e-06; 325-367, E()=6.76e+00; 410-445, E()=3.67e+01; 1 probable transmembrane helix predicted for TA10450 by TMHMM2.0 at aa 12-31; Signal anchor predicted for TA10450 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.886) with cleavage site probability 0.002 between residues 27 and 28; uncharacterized protein	complement(join(1375220..1375642,1375672..1376810,1376842..1376911,1376943..1377000,1377035..1377077,1377112..1377182,1377228..1377280))	Theileria annulata	3862674
TA10445	CDS	TA10445	NC_011098.1	1377313	1378502	R	Tap579b07.q1c.cand.96 - score = 70.12; uncharacterized protein	complement(join(1377313..1377447,1377480..1377652,1377682..1377908,1377940..1378502))	Theileria annulata	3862566
TA10440	CDS	TA10440	NC_011098.1	1378894	1380867	D	Tap579b07.q1c.C.cand.54 - score = 61.98; SMART pfam:SART-1 (PF003343) at aa 1-522, E()=4.70e-04; uncharacterized protein	join(1378894..1379969,1380049..1380137,1380170..1380318,1380389..1380523,1380587..1380704,1380749..1380867)	Theileria annulata	3862565
TA10435	CDS	TA10435	NC_011098.1	1380933	1383027	R	SMART pfam:BSD (PF03909) at aa 212-260, E()=3.10e-03; uncharacterized protein	complement(join(1380933..1381064,1381098..1381397,1381463..1381675,1381705..1381757,1381790..1381984,1382016..1382381,1382411..1382791,1382829..1383027))	Theileria annulata	3862564
TA10430	CDS	TA10430	NC_011098.1	1383275	1384270	R	uncharacterized protein	complement(join(1383275..1383495,1383544..1383817,1383849..1383919,1383950..1384205,1384238..1384270))	Theileria annulata	3862563
TA10425	CDS	TA10425	NC_011098.1	1384590	1385954	D	Tap579b07.q1c.C.cand.55 - score = 47.87; SMART pfam:enolase_N (PF03952) at aa 3-139, E()=9.70e-67; pfam:enolase (PF00113) at aa 149-441, E()=1.80e-199; enolase, putative	join(1384590..1384629,1384666..1385954)	Theileria annulata	3862562
TA10415	CDS	TA10415	NC_011098.1	1386119	1386919	D	Tap579b07.q1c.C.cand.56 - score = 22.74; uncharacterized protein	1386119..1386919	Theileria annulata	3862560
TA10410	CDS	TA10410	NC_011098.1	1387173	1392505	D	Tap579b07.q1c.C.cand.57 - score = 115.92; SMART pfam:Yeast_VAR1 (PF05316) at aa 844-1154, E()=5.60e-02; uncharacterized protein	join(1387173..1387319,1387352..1387652,1387684..1392248,1392278..1392505)	Theileria annulata	3862559
TA10405	CDS	TA10405	NC_011098.1	1392544	1393365	D	Tap579b07.q1c.C.cand.58 - score = 28.68; SMART pfam:Maf (PF02545) at aa 19-243, E()=1.20e-20; Maf-like protein, putative	join(1392544..1392879,1392920..1393190,1393223..1393365)	Theileria annulata	3862558
TA10400	CDS	TA10400	NC_011098.1	1393552	1397632	D	Tap579b07.q1c.C.cand.59 - score = 159.19; uncharacterized protein	join(1393552..1393825,1393859..1394120,1394156..1394316,1394346..1394583,1394615..1395148,1395180..1395332,1395362..1395454,1395485..1395765,1395796..1396164,1396193..1396374,1396407..1396600,1396629..1396824,1396854..1397252,1397282..1397478,1397512..1397632)	Theileria annulata	3862557
TA10395	CDS	TA10395	NC_011098.1	1397976	1401257	D	SMART 12 transmembrane domains at aa 50-72, 335-357, 372-394, 448-470, 490-512, 524-543, 558-580, 668-687, 910-932, 966-988, 1014-1036 and 1057-1079; 12 probable transmembrane helices predicted for TA10395 by TMHMM2.0 at aa 50-72, 335-357, 372-394, 448-470, 490-512, 524-543, 558-580, 668-687, 910-932, 966-988, 1014-1036 and 1057-1079; uncharacterized protein	1397976..1401257	Theileria annulata	3862556
TA10390	CDS	TA10390	NC_011098.1	1402050	1403963	D	Tap579b07.q1c.C.cand.60 - score = 48.72; SMART DEXDc (SM00487) at aa 117-376, E()=2.42e-11; pfam:helicase_C (PF00271) at aa 434-528, E()=7.90e-03; DEAD-box family helicase, putative	join(1402050..1402706,1402735..1402808,1402839..1403014,1403046..1403116,1403147..1403283,1403315..1403406,1403436..1403554,1403584..1403716,1403749..1403804,1403835..1403963)	Theileria annulata	3862555
TA10385	CDS	TA10385	NC_011098.1	1404554	1404904	D	Tap579b07.q1c.C.cand.61 - score = 15.89; SMART pfam:60s_ribosomal (PF00428) at aa 32-115, E()=1.40e-20; 60S ribosomal protein P1, putative	1404554..1404904	Theileria annulata	3862554
TA10380	CDS	TA10380	NC_011098.1	1405086	1405590	D	Tap579b07.q1c.C.cand.62 - score = 16.76; SMART pfam:cytochrome_c (PF00034) at aa 19-139, E()=3.70e-05; cyctochrome C, putative	join(1405086..1405224,1405262..1405590)	Theileria annulata	3862553
TA10375	CDS	TA10375	NC_011098.1	1405706	1406902	R	Tap579b07.q1c.cand.93 - score = 30.24; uncharacterized protein	complement(join(1405706..1406025,1406056..1406902))	Theileria annulata	3862552
TA10370	CDS	TA10370	NC_011098.1	1407802	1409988	D	Tap579b07.q1c.C.cand.63 - score = 52.28; SMART pfam:ATP-synt_ab_N (PF02874) at aa 41-96, E()=2.80e-12; pfam:ATP-synt_ab (PF00006) at aa 283-475, E()=2.00e-79; pfam:ATP-synt_ab-C (PF00306) at aa 483-630, E()=1.50e-36; 1 probable transmembrane helix predicted for TA10370 by TMHMM2.0 at aa 21-43; vacuolar H+-ATPase, a subunit, putative	join(1407802..1408051,1408137..1408422,1408456..1408633,1408665..1408775,1408806..1409190,1409273..1409773,1409804..1409988)	Theileria annulata	3862551
TA10360	CDS	TA10360	NC_011098.1	1409999	1410696	R	Tap579b07.q1c.cand.92 - score = 24.53; uncharacterized protein	complement(join(1409999..1410412,1410442..1410585,1410616..1410696))	Theileria annulata	3862549
TA10355	CDS	TA10355	NC_011098.1	1411125	1414027	D	tRNA-splicing endonuclease, SEN1 homologue, putative	join(1411125..1411403,1411434..1413738,1413777..1413931,1413962..1414027)	Theileria annulata	3862548
TA10350	CDS	TA10350	NC_011098.1	1414076	1414809	R	Tap579b07.q1c.cand.91 - score = 21.96; uncharacterized protein	complement(join(1414076..1414524,1414563..1414809))	Theileria annulata	3862547
TA10345	CDS	TA10345	NC_011098.1	1415033	1416223	D	Tap579b07.q1c.C.cand.65 - score = 24.90; SMART 1 transmembrane domain at aa 365-387; 1 probable transmembrane helix predicted for TA10345 by TMHMM2.0 at aa 365-387; GPI-Anchor Signal predicted for TA10345 by DGPI v2.04, no cleavage site predicted; uncharacterized protein	1415033..1416223	Theileria annulata	3862634
TA10340	CDS	TA10340	NC_011098.1	1416393	1417965	R	Tap579b07.q1c.cand.90 - score = 53.65; SMART pfam:E1_dehydrog (PF00676) at aa 110-411, E()=5.10e-94; branched-chain alpha-keto acid dehydrogenase E1, subunit, putative	complement(join(1416393..1416476,1416506..1416687,1416718..1416809,1416839..1416943,1416973..1417323,1417357..1417419,1417449..1417548,1417578..1417965))	Theileria annulata	3862633
TA10335	CDS	TA10335	NC_011098.1	1418378	1419310	D	Tap579b07.q1c.C.cand.66 - score = 21.19; uncharacterized protein	1418378..1419310	Theileria annulata	3862632
TA10330	CDS	TA10330	NC_011098.1	1419350	1420170	R	Tap579b07.q1c.cand.89 - score = 17.84; uncharacterized protein	complement(join(1419350..1419497,1419529..1419664,1419694..1419968,1420001..1420170))	Theileria annulata	3862631
TA10325	CDS	TA10325	NC_011098.1	1420609	1421886	D	Tap579b07.q1c.C.cand.67 - score = 35.31; uncharacterized protein	join(1420609..1421487,1421518..1421583,1421615..1421781,1421814..1421886)	Theileria annulata	3862630
TA10320	CDS	TA10320	NC_011098.1	1422181	1422595	D	Tap579b07.q1c.C.cand.68 - score = 12.11; SMART RRM (SM00360) at aa 11-84, E()=2.73e-07; uncharacterized protein	join(1422181..1422318,1422432..1422512,1422542..1422595)	Theileria annulata	3862629
TA10315	CDS	TA10315	NC_011098.1	1422781	1424172	R	Tap579b07.q1c.cand.88 - score = 23.19; SMART pfam:SDF (PF00375) at aa 32-452, E()=5.40e-06; 10 probable transmembrane helices predicted for TA10315 by TMHMM2.0 at aa 23-45, 71-93, 106-128, 194-213, 233-255, 270-292, 305-324, 344-366, 378-400 and 404-426; Signal anchor predicted for TA10315 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.944) with cleavage site probability 0.001 between residues 47 and 48; sodium transporter, putative	complement(1422781..1424172)	Theileria annulata	3862628
TA10300	CDS	TA10300	NC_011098.1	1424497	1425737	R	Tap579b07.q1c.cand.87 - score = 23.49; SMART 6 transmembrane domains at aa 24-46, 67-89, 117-135, 213-235, 250-272 and 297-319; 6 probable transmembrane helices predicted for TA10300 by TMHMM2.0 at aa 24-46, 67-89, 117-135, 213-235, 250-272 and 297-319; uncharacterized protein	complement(join(1424497..1425365,1425395..1425737))	Theileria annulata	3862625
TA10295	CDS	TA10295	NC_011098.1	1425925	1428344	D	Tap579b07.q1c.C.cand.69 - score = 49.71; SMART DEXDc (SM00487) at aa 22-262, E()=2.91e-23; HELICc (SM00490) at aa 400-480, E()=1.73e-16; DEAD-box-family helicase, putative	join(1425925..1426048,1426084..1428344)	Theileria annulata	3862624
TA10290	CDS	TA10290	NC_011098.1	1428513	1429382	R	Tap579b07.q1c.cand.86 - score = 24.44; SMART pfam:YEATS (PF03366) at aa 12-117, E()=1.20e-27; uncharacterized protein	complement(join(1428513..1428602,1428633..1428748,1428780..1428930,1428961..1429079,1429109..1429241,1429302..1429382))	Theileria annulata	3862623
TA10285	CDS	TA10285	NC_011098.1	1429628	1430893	D	Tap579b07.q1c.C.cand.70 - score = 41.31; Signal peptide predicted for TA10285 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.859 between residues 17 and 18; uncharacterized protein	join(1429628..1430194,1430233..1430478,1430511..1430546,1430579..1430648,1430676..1430893)	Theileria annulata	3862622
TA10280	CDS	TA10280	NC_011098.1	1431340	1434150	D	Tap579b07.q1c.C.cand.71 - score = 65.21; SMART pfam:V_ATPase_sub_a (PF01496) at aa 25-924, E()=2.30e-103; 6 probable transmembrane helices predicted for TA10280 by TMHMM2.0 at aa 471-493, 513-535, 599-621, 628-650, 696-718 and 864-886; vacuolar H+ ATPase, 116 kDa subunit, putative	1431340..1434150	Theileria annulata	3862621
TA10275	CDS	TA10275	NC_011098.1	1434246	1435794	R	Tap579b07.q1c.cand.85 - score = 37.03; SMART pfam:MMR_HSR1 (PF01926) at aa 81-401, E()=3.40e-05; pfam:GTP_EFTU (PF00009) at aa 196-388, E()=5.00e-02; Signal peptide predicted for TA10275 by SignalP 2.0 HMM (Signal peptide probability 0.841, signal anchor probability 0.000) with cleavage site probability 0.813 between residues 16 and 17; GTP-binding protein/GTPase, putative	complement(join(1434246..1434502,1434587..1435413,1435445..1435794))	Theileria annulata	3862620
TA10270	CDS	TA10270	NC_011098.1	1435800	1436894	R	Tap579b07.q1c.cand.84 - score = 18.59; SMART pfam:Ribosomal_L3 (PF00297) at aa 95-291, E()=1.30e-31; 50S ribosomal protein L3, putative	complement(join(1435800..1436580,1436632..1436894))	Theileria annulata	3862619
TA10265	CDS	TA10265	NC_011098.1	1437038	1438455	R	Tap579b07.q1c.cand.83 - score = 33.18; uncharacterized protein	complement(join(1437038..1437124,1437159..1437410,1437443..1437571,1437604..1437714,1437759..1437909,1437940..1438232,1438263..1438359,1438397..1438455))	Theileria annulata	3862618
TA10260	CDS	TA10260	NC_011098.1	1438741	1441842	D	Tap579b07.q1c.C.cand.72 - score = 63.22; SMART pfam:Nucleoporin2 (PF04096) at aa 864-1026, E()=7.70e-10; nucleoporin, putative	1438741..1441842	Theileria annulata	3862617
TA10255	CDS	TA10255	NC_011098.1	1442072	1442403	D	Tap579b07.q1c.C.cand.73 - score = 9.75; SMART pfam:Ribosomal_S21e (PF01249) at aa 1-81, E()=4.40e-30; 40S ribosomal protein S21, putative	join(1442072..1442185,1442269..1442403)	Theileria annulata	3862616
TA10250	CDS	TA10250	NC_011098.1	1442480	1442952	R	Tap579b07.q1c.cand.82 - score = 8.00; SMART pfam:Img2 (PF05046) at aa 31-94, E()=1.80e-05; mitochondrial large subunit ribosomal protein, putative	complement(join(1442480..1442614,1442659..1442760,1442827..1442952))	Theileria annulata	3862546
TA10245	CDS	TA10245	NC_011098.1	1443028	1445450	R	Tap579b07.q1c.cand.81 - score = 68.97; SMART pfam:Peptidase_M24 (PF00557) at aa 356-595, E()=3.40e-07; peptidase, putative	complement(join(1443028..1443165,1443197..1443607,1443728..1443881,1443911..1443981,1444039..1444119,1444149..1444238,1444268..1444472,1444502..1444573,1444604..1444704,1444734..1445127,1445158..1445450))	Theileria annulata	3862545
TA10240	CDS	TA10240	NC_011098.1	1445904	1448723	D	Tap579b07.q1c.C.cand.74 - score = 86.03; SMART PINT (SM00088) at aa 784-872, E()=5.08e-06; eukaryotic translation initiation factor 3 (subunit 8), putative	1445904..1448723	Theileria annulata	3862544
TA10235	CDS	TA10235	NC_011098.1	1448831	1452092	R	SMART pfam:tRNA-synt_1 (PF00133) at aa 41-666, E()=8.60e-221; valyl-tRNA synthetase, putative	complement(join(1448831..1449190,1449281..1449790,1449947..1451457,1451614..1451831,1451866..1452092))	Theileria annulata	3862543
TA10230	CDS	TA10230	NC_011098.1	1452861	1456304	D	Tap579b07.q1c.C.cand.75 - score = 71.56; SMART 1 transmembrane domain at aa 12-31; 1 probable transmembrane helix predicted for TA10230 by TMHMM2.0 at aa 12-31; Signal peptide predicted for TA10230 by SignalP 2.0 HMM (Signal peptide probability 0.828, signal anchor probability 0.155) with cleavage site probability 0.739 between residues 30 and 31; uncharacterized protein	join(1452861..1453814,1453852..1454372,1454409..1454631,1454702..1455897,1455992..1456304)	Theileria annulata	3862542
TA10225	CDS	TA10225	NC_011098.1	1456922	1458590	R	Tap579b07.q1c.cand.79 - score = 28.42; uncharacterized protein	complement(join(1456922..1457284,1457484..1457658,1457702..1457835,1457867..1457919,1457949..1458084,1458115..1458163,1458202..1458243,1458275..1458325,1458391..1458590))	Theileria annulata	3862541
TA10220	CDS	TA10220	NC_011098.1	1458797	1460437	D	Tap579b07.q1c.C.cand.77 - score = 43.96; uncharacterized protein	join(1458797..1459075,1459107..1459304,1459334..1459486,1459517..1459625,1459655..1459726,1459792..1459968,1459999..1460045,1460088..1460117,1460148..1460302,1460335..1460437)	Theileria annulata	3862540
TA10215	CDS	TA10215	NC_011098.1	1460464	1461201	D	Tap579b07.q1c.C.cand.78 - score = 34.30; SMART pfam:RimM (PF01782) at aa 93-181, E()=2.80e-20; 16S rRNA processing protein (RimM homologue), putative	join(1460464..1460530,1460561..1461201)	Theileria annulata	3862539
TA10210	CDS	TA10210	NC_011098.1	1461282	1461785	D	Tap579b07.q1c.C.cand.78 - score = 34.30; SMART ZnF_C2H2 (SM00355) at aa 68-90, E()=2.67e-01; uncharacterized protein	1461282..1461785	Theileria annulata	3862538
TA10205	CDS	TA10205	NC_011098.1	1461814	1463264	R	Tap579b07.q1c.cand.78 - score = 28.57; uncharacterized protein	complement(join(1461814..1462017,1462070..1462229,1462259..1462514,1462590..1462832,1462901..1463264))	Theileria annulata	3862537
TA10190	CDS	TA10190	NC_011098.1	1463422	1465410	R	Tap579b07.q1c.cand.77 - score = 46.44; uncharacterized protein	complement(1463422..1465410)	Theileria annulata	3862534
TA10185	CDS	TA10185	NC_011098.1	1465892	1466864	R	Tap579b07.q1c.cand.76 - score = 26.07; SMART pfam:Ribosomal_S2 (PF00318) at aa 18-186, E()=1.10e-75; ribosomal protein S2, putative	complement(join(1465892..1466650,1466799..1466864))	Theileria annulata	3862533
TA10180	CDS	TA10180	NC_011098.1	1467328	1467662	R	Tap579b07.q1c.cand.75 - score = 11.82; uncharacterized protein	complement(join(1467328..1467383,1467437..1467662))	Theileria annulata	3862532
TA10175	CDS	TA10175	NC_011098.1	1467938	1468653	D	Tap579b07.q1c.C.cand.79 - score = 13.80; SMART 1 transmembrane domain at aa 138-160; 1 probable transmembrane helix predicted for TA10175 by TMHMM2.0 at aa 138-160; uncharacterized protein	join(1467938..1468001,1468142..1468653)	Theileria annulata	3862531
TA10170	CDS	TA10170	NC_011098.1	1468866	1471805	D	SMART RRM (SM00360) at aa 168-243, E()=6.45e-18; SWAP (SM00064) at aa 291-366, E()=3.61e-01; RPR (SM00582) at aa 424-559, E()=4.43e-05; uncharacterized protein	join(1468866..1468925,1468969..1469139,1469194..1469308,1469365..1469436,1469468..1469991,1470033..1470163,1470199..1470339,1470389..1470596,1470653..1470776,1470811..1470920,1471006..1471060,1471089..1471192,1471250..1471381,1471437..1471691,1471767..1471805)	Theileria annulata	3862530
TA10165	CDS	TA10165	NC_011098.1	1471871	1474624	D	Tap579b07.q1c.C.cand.82 - score = 47.37; SMART 10 transmembrane domains at aa 12-34, 49-71, 92-114, 119-141, 148-170, 185-207, 278-300, 755-777, 797-819 and 824-846; 10 probable transmembrane helices predicted for TA10165 by TMHMM2.0 at aa 12-34, 49-71, 92-114, 119-141, 148-170, 185-207, 278-300, 755-777, 797-819 and 824-846; Tpr-related protein family member, putative	1471871..1474624	Theileria annulata	3862529
TA10160	CDS	TA10160	NC_011098.1	1474697	1475185	R	Tap579b07.q1c.cand.73 - score = 14.34; SMART pfam:Ribosomal_S27 (PF01599) at aa 110-155, E()=1.40e-25; S27 ribosomal protein, putative	complement(1474697..1475185)	Theileria annulata	3862528
TA10155	CDS	TA10155	NC_011098.1	1475733	1478870	D	SMART pfam:WW (PF00397) at aa 184-215, E()=1.40e-02; uncharacterized protein	join(1475733..1475807,1475884..1476208,1476245..1476403,1476465..1477054,1477237..1477445,1477481..1478269,1478304..1478393,1478426..1478870)	Theileria annulata	3862527
TA10150	CDS	TA10150	NC_011098.1	1479097	1480022	R	SMART pfam:NUDIX (PF00293) at aa 85-224, E()=8.50e-05; nucleoside diphosphate hydrolase, putative	complement(join(1479097..1479177,1479210..1479308,1479340..1479425,1479461..1479607,1479675..1479824,1479884..1480022))	Theileria annulata	3863349
TA10145	CDS	TA10145	NC_011098.1	1480388	1484481	D	Tap579b07.q1c.C.cand.84 - score = 88.73; SMART pfam:SAC3_GANP (PF03399) at aa 101-392, E()=1.60e-08; uncharacterized protein	join(1480388..1480427,1480507..1480626,1480691..1484481)	Theileria annulata	3863348
TA10140	CDS	TA10140	NC_011098.1	1484594	1485919	D	Tap579b07.q1c.C.cand.84 - score = 88.73; uncharacterized protein	join(1484594..1484659,1484743..1484861,1484975..1485155,1485220..1485405,1485473..1485919)	Theileria annulata	3863347
TA10135	CDS	TA10135	NC_011098.1	1485976	1488115	D	Tap579b07.q1c.C.cand.85 - score = 30.22; uncharacterized protein	join(1485976..1486075,1486165..1486301,1486688..1486888,1486930..1487267,1487327..1487425,1487460..1487526,1487557..1487697,1487726..1487827,1487857..1487940,1487975..1488115)	Theileria annulata	3863346
TA10130	CDS	TA10130	NC_011098.1	1488203	1490108	R	Tap579b07.q1c.cand.71 - score = 17.58; SMART pfam:Glycos_transf_1 (PF00534) at aa 189-357, E()=4.40e-34; glycosyl transferase, putative	complement(join(1488203..1488502,1488534..1488575,1488633..1488749,1488783..1488838,1488873..1488968,1489000..1489077,1489137..1489293,1489378..1489500,1489530..1489649,1489752..1489951,1489991..1490108))	Theileria annulata	3863345
TA10125	CDS	TA10125	NC_011098.1	1490416	1492833	R	Tap579b07.q1c.cand.70 - score = 32.63; uncharacterized protein	complement(join(1490416..1491062,1491133..1491247,1491277..1491395,1491454..1491672,1491730..1491906,1491968..1492157,1492192..1492474,1492550..1492644,1492786..1492833))	Theileria annulata	3863344
TA10120	CDS	TA10120	NC_011098.1	1492987	1494765	R	Tap579b07.q1c.cand.69 - score = 62.92; SMART PINT (SM00088) at aa 491-574. E()=1.88e-18; proteasome subunit, putative	complement(1492987..1494765)	Theileria annulata	3863343
TA10115	CDS	TA10115	NC_011098.1	1495111	1495921	R	Tap579b07.q1c.cand.69 - score = 62.92; uncharacterized protein	complement(join(1495111..1495216,1495344..1495444,1495484..1495825,1495856..1495921))	Theileria annulata	3863342
TA10110	CDS	TA10110	NC_011098.1	1496333	1497249	D	Tap579b07.q1c.C.cand.86 - score = 10.61; SMART pfam:DER1 (PF04511) at aa 14-212, E()=2.80e-34; 5 probable transmembrane helices predicted for TA10110 by TMHMM2.0 at aa 20-37, 57-79, 91-113, 117-139 and 159-181; Signal anchor predicted for TA10110 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.950) with cleavage site probability 0.009 between residues 39 and 40; uncharacterized protein	join(1496333..1496696,1496780..1497007,1497122..1497249)	Theileria annulata	3863341
TA10105	CDS	TA10105	NC_011098.1	1497443	1498466	R	Tap579b07.q1c.cand.68 - score = 19.64; SMART pfam:DUF155 (PF02582) at aa 1-210, E()=3.90e-02; uncharacterized protein	complement(join(1497443..1497621,1497656..1497728,1497758..1497811,1497840..1497914,1497947..1498010,1498099..1498208,1498250..1498317,1498391..1498466))	Theileria annulata	3863340
TA10100	CDS	TA10100	NC_011098.1	1499235	1500952	R	Tap579b07.q1c.cand.67 - score = 104.10; SMART 2 RRM (SM00360) at aa 128-199, E()=3.16e-12; 212-283, E()=2.13e-18; RNA-binding protein, putative	complement(join(1499235..1500040,1500110..1500260,1500307..1500470,1500500..1500577,1500610..1500952))	Theileria annulata	3863339
TA10095	CDS	TA10095	NC_011098.1	1501258	1503100	R	Tap579b07.q1c.cand.67 - score = 104.10; SMART UBQ (SM00213) at aa 8-78, E()=2.01e-09; pfam:UCH (PF00443) at aa 111-531, E()=4.40e-47; ubiquitin C-terminal hydrolase, putative	complement(join(1501258..1502253,1502284..1502309,1502342..1502396,1502427..1502624,1502702..1502930,1502988..1503100))	Theileria annulata	3863338
TA10080	CDS	TA10080	NC_011098.1	1503159	1504623	D	Tap579b07.q1c.C.cand.87 - score = 28.50; uncharacterized protein	join(1503159..1503263,1503460..1503573,1503603..1503788,1503819..1504068,1504099..1504158,1504187..1504284,1504315..1504623)	Theileria annulata	3863335
TA10075	CDS	TA10075	NC_011098.1	1504721	1505956	R	Tap579b07.q1c.cand.66 - score = 30.90; SMART pfam:Peptidase_M24 (PF00557) at aa 87-327, E()=7.30e-46; methionine aminopeptidase, putative	complement(join(1504721..1504866,1504896..1504943,1504973..1505144,1505174..1505244,1505274..1505363,1505393..1505512,1505555..1505767,1505818..1505956))	Theileria annulata	3863334
TA10070	CDS	TA10070	NC_011098.1	1506137	1506792	D	Tap579b07.q1c.C.cand.88 - score = 26.00; SMART pfam:efhand (PF00036) at aa 16-44, E()=3.40e-05; uncharacterized protein	join(1506137..1506189,1506229..1506283,1506316..1506382,1506416..1506445,1506477..1506581,1506611..1506792)	Theileria annulata	3863333
TA10065	CDS	TA10065	NC_011098.1	1506868	1507341	R	SMART KOW (SM00739) at aa 53-80, E()=4.73e-05; 60S ribosomal protein L26, putative	complement(join(1506868..1507265,1507311..1507341))	Theileria annulata	3863332
TA10060	CDS	TA10060	NC_011098.1	1508708	1510376	R	Tap579b07.q1c.cand.64 - score = 34.20; SMART 4 WD40 (SM00320) domains at aa 66-106, E()=2.82e-08; 115-155, E()=1.26e-05; 160-196, E()=3.82e+01; 199-246, E()=9.21e+00; 1 probable transmembrane helix predicted for TA10060 by TMHMM2.0 at aa 39-61; Signal anchor predicted for TA10060 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.992) with cleavage site probability 0.000 between residues 57 and 58; coronin, putative	complement(join(1508708..1508857,1508887..1509234,1509265..1509571,1509604..1509681,1509718..1509883,1509916..1509987,1510025..1510092,1510114..1510237,1510346..1510376))	Theileria annulata	3863331
TA10055	CDS	TA10055	NC_011098.1	1511305	1512855	D	Tap579b07.q1c.C.cand.89 - score = 86.32; Signal peptide predicted for TA10055 by SignalP 2.0 HMM (Signal peptide probability 0.840, signal anchor probability 0.000) with cleavage site probability 0.184 between residues 31 and 32; uncharacterized protein	1511305..1512855	Theileria annulata	3863330
TA10050	CDS	TA10050	NC_011098.1	1513132	1515244	D	Tap579b07.q1c.C.cand.89 - score = 86.32; SMART DEXDc (SM00487) at aa 97-310, E()=5.00e-45; HELICc (SM00490) at aa 347-428, E()=1.02e-27; DEAD-box family helicase, putative	join(1513132..1513197,1513288..1513494,1513534..1513617,1513648..1513740,1513771..1513902,1513935..1514042,1514074..1514151,1514182..1514436,1514465..1514574,1514605..1514718,1514750..1515042,1515072..1515244)	Theileria annulata	3863329
TA10045	CDS	TA10045	NC_011098.1	1515780	1517610	D	Tap579b07.q1c.C.cand.90 - score = 68.29; uncharacterized protein	join(1515780..1517102,1517134..1517610)	Theileria annulata	3863328
TA10040	CDS	TA10040	NC_011098.1	1517659	1519115	R	Tap579b07.q1c.cand.62 - score = 25.80; SMART pfam:tRNA-synt_1b (PF00579) at aa 51-329, E()=1.10e-39; tryptophan-tRNA synthetase, putative	complement(join(1517659..1518032,1518062..1518195,1518225..1518385,1518416..1518501,1518531..1518689,1518721..1518835,1518933..1519115))	Theileria annulata	3863327
TA10035	CDS	TA10035	NC_011098.1	1519377	1522719	D	Tap579b07.q1c.C.cand.91 - score = 98.51; SMART STYKc (SM00221) at aa 682-976, E()=2.97e-07; protein kinase, putative	join(1519377..1519763,1519801..1520015,1520046..1520145,1520178..1520213,1520243..1520840,1520876..1521017,1521057..1521886,1521922..1522082,1522111..1522179,1522208..1522327,1522357..1522406,1522435..1522475,1522529..1522719)	Theileria annulata	3863326
TA10025	CDS	TA10025	NC_011098.1	1522742	1523455	R	uncharacterized protein	complement(join(1522742..1523394,1523434..1523455))	Theileria annulata	3863324
TA10020	CDS	TA10020	NC_011098.1	1523707	1526455	D	Tap579b07.q1c.C.cand.92 - score = 51.49; SMART 2 transmembrane domains at 187-209 and 230-249; pfam:DUF221 (PF02714) at 441-819, E()=2.40e-05; 8 probable transmembrane helices predicted for TA10020 by TMHMM2.0 at aa 7-29, 187-209, 230-249, 505-527, 548-570, 574-596, 609-631 and 708-730; uncharacterized protein	join(1523707..1524477,1524509..1524678,1524711..1525098,1525129..1525213,1525244..1525450,1525482..1525526,1525558..1525778,1525810..1525957,1525999..1526110,1526140..1526455)	Theileria annulata	3863323
TA10015	CDS	TA10015	NC_011098.1	1526889	1527520	R	Tap579b07.q1c.cand.60 - score = 9.09; uncharacterized protein	complement(join(1526889..1527037,1527136..1527289,1527371..1527520))	Theileria annulata	3863322
TA10010	CDS	TA10010	NC_011098.1	1527620	1529776	R	uncharacterized protein	complement(join(1527620..1527790,1527821..1527910,1527941..1527965,1527989..1528041,1528071..1528289,1528321..1528434,1528466..1528588,1528623..1528815,1528880..1529043,1529168..1529355,1529393..1529572,1529677..1529776))	Theileria annulata	3863321
TA10005	CDS	TA10005	NC_011098.1	1529914	1530957	R	Tap579b07.q1c.cand.59 - score = 165.13; SMART pfam:Vps26 (PF03643) at aa 3-277, E()=8.20e-110; vacuolar protein sorting (Vps) 26 homologue, putative	complement(join(1529914..1530158,1530188..1530423,1530453..1530582,1530614..1530679,1530718..1530814,1530847..1530957))	Theileria annulata	3863320
TA10000	CDS	TA10000	NC_011098.1	1531327	1536111	R	Tap579b07.q1c.cand.59 - score = 165.13; SMART 2 transmembrane domains at aa 349-371 and 378-400; 2 probable transmembrane helices predicted for TA10000 by TMHMM2.0 at aa 349-371 and 378-400; uncharacterized protein	complement(1531327..1536111)	Theileria annulata	3863319
TA09995	CDS	TA09995	NC_011098.1	1536628	1539483	D	Tap579b07.q1c.C.cand.93 - score = 65.11; SMART DEXDc2 (unknown) at aa 14-319, E()=2.48e-49; HELICc2 (unknown) at aa 648-808, E()=4.97e-40; helicase, putative	1536628..1539483	Theileria annulata	3863318
TA09990	CDS	TA09990	NC_011098.1	1539629	1540780	R	Tap579b07.q1c.cand.58 - score = 37.73; SMART 1 transmembrane domain at aa 178-200; 1 probable transmembrane helix predicted for TA09990 by TMHMM2.0 at aa 178-200; uncharacterized protein	complement(join(1539629..1540470,1540507..1540780))	Theileria annulata	3863317
TA09985	CDS	TA09985	NC_011098.1	1541493	1543950	R	Tap579b07.q1c.cand.57 - score = 80.63; uncharacterized protein	complement(join(1541493..1542023,1542055..1542141,1542171..1542833,1542867..1542940,1542970..1543292,1543326..1543389,1543421..1543640,1543674..1543799,1543837..1543950))	Theileria annulata	3863316
TA09980	CDS	TA09980	NC_011098.1	1544576	1546257	D	SMART pfam:MMR_HSR1 (PF01926) at aa 13-306, E()=5.60e-05; GTPase, putative	join(1544576..1544671,1544703..1544782,1544826..1544892,1544915..1544999,1545029..1545193,1545229..1545296,1545326..1545431,1545462..1545625,1545666..1545718,1545748..1545871,1545901..1545944,1545976..1546078,1546108..1546257)	Theileria annulata	3863315
TA09970	CDS	TA09970	NC_011098.1	1546441	1547395	R	uncharacterized protein	complement(join(1546441..1546509,1546543..1546618,1546649..1546785,1546843..1546917,1546954..1547042,1547081..1547166,1547199..1547395))	Theileria annulata	3863313
TA09965	CDS	TA09965	NC_011098.1	1547461	1548663	R	Tap579b07.q1c.cand.56 - score = 43.78; uncharacterized protein	complement(1547461..1548663)	Theileria annulata	3863312
TA09960	CDS	TA09960	NC_011098.1	1549672	1551513	R	Tap579b07.q1c.cand.55 - score = 40.53; SMART STYKc (SM00221) at aa 30-457, E()=9.36e-08; cell-cycle-related serine/threonine protein kinase, CDK homologue, putative	complement(join(1549672..1550131,1550171..1550337,1550367..1550585,1550615..1550739,1550775..1550921,1550956..1551004,1551034..1551513))	Theileria annulata	3863311
TA09955	CDS	TA09955	NC_011098.1	1552033	1552520	R	Tap579b07.q1c.cand.54 - score = 26.90; SMART pfam:DUF343 (PF03966) at aa 1-115, E()=1.40e-03; uncharacterized protein	complement(join(1552033..1552110,1552150..1552236,1552277..1552433,1552489..1552520))	Theileria annulata	3863115
TA09950	CDS	TA09950	NC_011098.1	1552551	1554349	R	SMART pfam:PRP38 (PF03371) at aa 124-306, E()=5.00e-12; 1 transmembrane domain at aa 496-513; 1 probable transmembrane helix predicted for TA09950 by TMHMM2.0 at aa 496-513; splicing component, putative	complement(join(1552551..1553088,1553121..1553262,1553332..1553430,1553451..1553755,1553787..1553861,1553891..1554011,1554043..1554117,1554157..1554349))	Theileria annulata	3863114
TA09945	CDS	TA09945	NC_011098.1	1554848	1555750	D	Tap579b07.q1c.C.cand.95 - score = 31.83; SMART 1 transmembrane domain at aa 242-264; 1 probable transmembrane helix predicted for TA09945 by TMHMM2.0 at aa 242-264; uncharacterized protein	join(1554848..1555022,1555053..1555334,1555364..1555480,1555512..1555750)	Theileria annulata	3863113
TA09940	CDS	TA09940	NC_011098.1	1555762	1556933	R	Tap579b07.q1c.cand.52 - score = 70.43; SMART 1 transmembrane domain at aa 7-29; pfam:Fibrillarin (PF01269) at aa 70-312, E()=2.00e-155; 1 probable transmembrane helix predicted for TA09940 by TMHMM2.0 at aa 7-29; fibrillarin, putative	complement(join(1555762..1556148,1556179..1556288,1556318..1556441,1556475..1556674,1556719..1556760,1556840..1556933))	Theileria annulata	3863112
TA09935	CDS	TA09935	NC_011098.1	1556960	1561653	R	SMART LH2 (SM00308) at aa 163-271, E()=7.17e-03; LCCL (SM00603) at aa 650-738, E()=2.38e-19; 984-1072, E()=4.09e-05; 1091-1178, E()=2.80e-16; SR (SM00202) at aa 402-515, E()=3.99e-10; uncharacterized protein	complement(join(1556960..1557106,1557141..1557196,1557232..1557333,1557367..1557453,1557488..1557998,1558027..1558136,1558168..1558311,1558341..1558448,1558583..1558657,1558687..1558846,1558881..1558932,1558972..1559236,1559268..1559351,1559469..1559712,1559744..1559844,1559876..1559937,1559970..1560036,1560068..1560109,1560139..1560207,1560237..1560302,1560335..1560483,1560513..1561103,1561186..1561217,1561312..1561518,1561591..1561653))	Theileria annulata	3863111
TA09930	CDS	TA09930	NC_011098.1	1561743	1563173	R	SMART pfam:Radical_SAM (PF04055) at aa 103-272, E()=6.30e-11; uncharacterized protein	complement(join(1561743..1561920,1561952..1561989,1562022..1562236,1562268..1562373,1562403..1562456,1562492..1562643,1562678..1562816,1562856..1563173))	Theileria annulata	3863110
TA09925	CDS	TA09925	NC_011098.1	1563984	1564881	D	Tap579b07.q1c.C.cand.96 - score = 25.13; SMART 6 transmembrane domains at aa 32-54, 83-102, 117-139, 159-178, 193-215 and 217-239; 6 probable transmembrane helices predicted for TA09925 by TMHMM2.0 at aa 32-54, 83-102, 117-139, 159-178, 193-215 and 217-239; uncharacterized protein	join(1563984..1564300,1564331..1564638,1564670..1564881)	Theileria annulata	3863109
TA09915	CDS	TA09915	NC_011098.1	1564959	1565639	R	Tap579b07.q1c.cand.50 - score = 21.67; SMART pfam:Metallophos (PF00149) at aa 10-128, E()=5.30e-02; vacuolar protein sorting, VPS29 homologue, putative	complement(join(1564959..1565341,1565381..1565639))	Theileria annulata	3863107
TA09910	CDS	TA09910	NC_011098.1	1565760	1568745	R	Tap579b07.q1c.cand.49 - score = 85.42; SMART 2 pfam:Clp_N (PF02861) at aa 85-137, E()=3.00e-05; 161-206, E()=9.70e-03; 2 AAA domains (SM00382) at aa 289-444, E()=1.21e-10; 618-768, E()=1.36e-09; endopeptidase (CLP homologue) ATP-binding chain, putative	complement(join(1565760..1565958,1566015..1566890,1566920..1567059,1567091..1567203,1567235..1567379,1567410..1567763,1567793..1568298,1568328..1568745))	Theileria annulata	3863106
TA09905	CDS	TA09905	NC_011098.1	1568988	1570737	R	Tap579b07.q1c.cand.48 - score = 51.40; SMART pfam:PPR (PF01535) at aa 224-258, E()=3.20e-05; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal anchor predicted for TA09905 by SignalP 2.0 HMM (Signal peptide probability 0.183, signal anchor probability 0.714) with cleavage site probability 0.036 between residues 40 and 41; uncharacterized protein	complement(join(1568988..1570141,1570194..1570737))	Theileria annulata	3863105
TA09900	CDS	TA09900	NC_011098.1	1570881	1571570	R	Tap579b07.q1c.cand.48 - score = 51.40; SMART pfam:DUF59 (PF01883) at aa 71-150, E()=4.80e-09; uncharacterized protein	complement(join(1570881..1571011,1571044..1571128,1571168..1571320,1571352..1571570))	Theileria annulata	3863104
TA09895	CDS	TA09895	NC_011098.1	1571812	1573286	R	5 probable transmembrane helices predicted for TA09895 by TMHMM2.0 at aa 127-149, 227-249, 259-281, 286-308 and 328-350; uncharacterized protein	complement(join(1571812..1572036,1572068..1572173,1572205..1572298,1572312..1572545,1572578..1572821,1572852..1573286))	Theileria annulata	3863103
TA09890	CDS	TA09890	NC_011098.1	1574506	1585798	D	Tap579b07.q1c.C.cand.97 - score = 266.09; SMART 3 PHD (SM00249) at aa 1211-1267, E()=1.91e+00; 1616-1667, E()=3.15e-02; 2975-3045, E()=1.31e+00; BROMO (SM00297) at aa 1269-1371, E()=6.40e-06; SET (SM00317) at aa 3466-3592, E()=5.78e-37; uncharacterized protein	join(1574506..1575205,1575240..1577590,1577621..1578523,1578616..1581402,1581436..1581639,1581735..1584958,1585051..1585171,1585204..1585563,1585661..1585798)	Theileria annulata	3863102
TA09885	CDS	TA09885	NC_011098.1	1585920	1586935	R	Tap579b07.q1c.cand.46 - score = 64.75; SMART pfam:Ubie_methyltran (PF01209) at aa 32-319, E()=2.40e-78; GPI-Anchor Signal predicted for TA09885 by DGPI v2.04, no cleavage site predicted; methyltransferase, putative	complement(join(1585920..1586590,1586641..1586935))	Theileria annulata	3863101
TA09880	CDS	TA09880	NC_011098.1	1587056	1588914	R	uncharacterized protein	complement(join(1587056..1587133,1587163..1587254,1587305..1587683,1587741..1587839,1587898..1588914))	Theileria annulata	3863100
TA09875	CDS	TA09875	NC_011098.1	1589633	1591436	D	Tap579b07.q1c.C.cand.98 - score = 28.81; SMART pfam:UPF0020 (PF01170) at aa 222-462, E()=2.60e-02; methylase, putative	join(1589633..1589817,1589853..1591045,1591192..1591436)	Theileria annulata	3863099
TA09870	CDS	TA09870	NC_011098.1	1591983	1595051	D	Tap579b07.q1c.C.cand.99 - score = 13.71; SMART 15 transmembrane domains 44-66, 108-130, 134-156, 284-301, 308-330, 340-362, 561-583, 593-611, 618-640, 655-677, 684-706, 75-777, 807-829, 839-861 and 987-1009; pfam:COX2_TM (PF02790) at aa 180-251, E()=7.50e-02; pfam:Glycos_transf_4 (PF00953) at aa 398-552, E()=9.10e-02; 22 probable transmembrane helices predicted for TA09870 by TMHMM2.0 at aa 44-66, 108-130, 134-156, 163-185, 200-222, 227-249, 284-301, 308-330, 340-362, 400-419, 429-451, 471-490, 526-548, 561-583, 593-611, 618-640, 655-677, 684-706, 755-777, 807-829, 839-861 and 987-1009; uncharacterized protein	1591983..1595051	Theileria annulata	3863098
TA09860	CDS	TA09860	NC_011098.1	1595198	1597465	R	Tap579b07.q1c.cand.45 - score = 97.78; uncharacterized protein	complement(join(1595198..1595448,1595484..1595594,1595629..1595716,1595749..1596036,1596103..1596165,1596195..1596368,1596398..1596498,1596576..1596823,1596855..1597146,1597239..1597298,1597360..1597465))	Theileria annulata	3863310
TA09855	CDS	TA09855	NC_011098.1	1597661	1599351	R	Tap579b07.q1c.cand.45 - score = 97.78; SMART 4 WD40 (SM00320) at aa 178-221, E()=8.59e-01; 245-285, E()=1.78e-05; 288-326, E()=5.15e-02; 344-383, E()=2.77e-01; microtubule-associated protein (YTM1 homologue), putative	complement(join(1597661..1597783,1597846..1598127,1598157..1598273,1598303..1598369,1598399..1598445,1598508..1598601,1598631..1598747,1598778..1598895,1598925..1599061,1599112..1599197,1599238..1599351))	Theileria annulata	3863309
TA09850	CDS	TA09850	NC_011098.1	1599799	1603080	D	Tap579b07.q1c.C.cand.100 - score = 77.99; SMART ZnF_NFX (SM00438) at aa 347-374, E()=0.00e+00; AWS (SM00570) at aa 721-765, E()=8.65e-02; SET (SM00317) at aa 768-896, E()=3.22e-35; uncharacterized protein	join(1599799..1602921,1602952..1603080)	Theileria annulata	3863308
TA09845	CDS	TA09845	NC_011098.1	1603114	1603939	D	Tap579b07.q1c.C.cand.100 - score = 77.99; SMART 2 transmembrane domains at aa 21-40, 78-100; 2 probable transmembrane helices predicted for TA09845 by TMHMM2.0 at aa 21-40 and 78-100; uncharacterized protein	join(1603114..1603215,1603245..1603331,1603385..1603547,1603608..1603939)	Theileria annulata	3863307
TA09840	CDS	TA09840	NC_011098.1	1604257	1612634	D	Tap579b07.q1c.C.cand.101 - score = 116.11; SMART POLBc (SM00486) at aa 295-976, E()=1.02e-60; DNA polymerase epsilon (catalytic subunit), putative	join(1604257..1607233,1607336..1608540,1608648..1609080,1609279..1609426,1609533..1609686,1609762..1609968,1610168..1610259,1610355..1610535,1610688..1610972,1611122..1611301,1611442..1611645,1611849..1611997,1612217..1612634)	Theileria annulata	3863306
TA09835	CDS	TA09835	NC_011098.1	1613989	1614635	R	uncharacterized protein	complement(join(1613989..1614043,1614072..1614171,1614284..1614323,1614359..1614421,1614540..1614635))	Theileria annulata	3863305
TA09830	CDS	TA09830	NC_011098.1	1614722	1616398	D	Tap579b07.q1c.C.cand.102 - score = 49.39; uncharacterized protein	join(1614722..1614891,1614923..1615112,1615144..1615197,1615275..1615335,1615367..1615406,1615438..1615455,1615599..1615627,1615661..1615712,1615848..1615910,1615943..1615971,1616000..1616076,1616104..1616182,1616271..1616398)	Theileria annulata	3863304
TA09825	CDS	TA09825	NC_011098.1	1616509	1617051	R	Tap579b07.q1c.cand.43 - score = 11.68; SMART 1 transmembrane domain at aa 99-121; 1 probable transmembrane helix predicted for TA09825 by TMHMM2.0 at aa 99-121; uncharacterized protein	complement(1616509..1617051)	Theileria annulata	3863303
TA09820	CDS	TA09820	NC_011098.1	1617170	1619123	D	Tap579b07.q1c.C.cand.103 - score = 19.95; SMART S_TKc (SM00220) at aa 10-297, E()=1.66e-79; pfam:KA1 (PF02149) at aa 397-445, E()=4.00e-02; serine/threonine kinase, putative	join(1617170..1617245,1617357..1617554,1617586..1617709,1617749..1617786,1617811..1617846,1617864..1617880,1617915..1618006,1618149..1618339,1618451..1618553,1618584..1618833,1618866..1619031,1619062..1619123)	Theileria annulata	3863302
TA09815	CDS	TA09815	NC_011098.1	1619432	1621108	R	Tap579b07.q1c.cand.42 - score = 30.52; SMART pfam:DUF529 (PF04385) at aa 119-282, E()=5.00e-07; 363-500, E()=1.70e-87; SfiI-subtelomeric fragment related protein family member, putative	complement(1619432..1621108)	Theileria annulata	3863301
TA11380	CDS	TA11380	NC_011098.1	1621634	1623905	R	Tap579b07.q1c.cand.41 - score = 25.52; SMART DEXDc (SM00487) at aa 89-292, E()=1.30e-52; HELICc (SM00490) at aa 328-409, E()=8.55e-21; DEAD-box family ATP-dependent helicase, putative	complement(join(1621634..1621810,1622023..1622307,1622398..1622451,1622603..1622863,1622980..1623461,1623557..1623905))	Theileria annulata	3862932
TA11375	CDS	TA11375	NC_011098.1	1624021	1626710	D	Tap579b07.q1c.C.cand.104 - score = 45.92; SMART ZnF_RBZ (SM00547) at aa 294-318, E()=1.24e-06; ZnF_C2H2 (SM00355) at aa 812-837, E()=2.12e+01; uncharacterized protein	join(1624021..1626268,1626418..1626710)	Theileria annulata	3862931
TA11370	CDS	TA11370	NC_011098.1	1626873	1628377	D	SMART pfam:Tfb4 (PF03850) at aa 27-370, E()=1.10e-04; 5 probable transmembrane helices predicted for TA11370 by TMHMM2.0 at aa 56-78, 98-120, 169-191, 277-299 and 330-352; uncharacterized protein	join(1626873..1627219,1627257..1627483,1627515..1627645,1627675..1627713,1627745..1627885,1628056..1628279,1628311..1628377)	Theileria annulata	3862930
TA11365	CDS	TA11365	NC_011098.1	1628724	1629661	R	Tap579b07.q1c.cand.40 - score = 7.94; SMART pfam:ER_lumen_recept (PF00810) at aa 2-209, E()=1.00e-111; 3 probable transmembrane helices predicted for TA11365 by TMHMM2.0 at aa 60-82, 103-125 and 182-204; Signal peptide predicted for TA11365 by SignalP 2.0 HMM (Signal peptide probability 0.733, signal anchor probability 0.063) with cleavage site probability 0.459 between residues 28 and 29; endoplasmic reticulum lumen protein retaining receptor (ERD2 homologue), putative	complement(join(1628724..1629070,1629236..1629414,1629516..1629661))	Theileria annulata	3862929
TA11360	CDS	TA11360	NC_011098.1	1629954	1633662	R	SMART 3 transmembrane domains at aa 36-58, 93-115 and 128-150; ZnF_NFX (SM00438) at aa 547-562, E()=0.00e+00; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA11360 by TMHMM2.0 at aa 36-58, 93-115 and 128-150; Signal anchor predicted for TA11360 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.993) with cleavage site probability 0.000 between residues 62 and 63; uncharacterized protein	complement(join(1629954..1630122,1630220..1631872,1632131..1633662))	Theileria annulata	3862928
TA11355	CDS	TA11355	NC_011098.1	1634003	1634959	D	SMART 2 transmembrane domains at aa 113-135 and 140-162; 2 probable transmembrane helices predicted for TA11355 by TMHMM2.0 at aa 113-135 and 140-162; uncharacterized protein	join(1634003..1634010,1634110..1634216,1634315..1634398,1634453..1634489,1634575..1634689,1634722..1634811,1634903..1634959)	Theileria annulata	3862927
TA11350	CDS	TA11350	NC_011098.1	1635198	1636165	R	Tap579b07.q1c.cand.38 - score = 15.05; SMART pfam:proteasome (PF00227) at aa 28-215, E()=3.00e-53; proteasome subunit, putative	complement(join(1635198..1635431,1635568..1635741,1635809..1636165))	Theileria annulata	3862926
TA11345	CDS	TA11345	NC_011098.1	1636545	1637708	D	Tap579b07.q1c.C.cand.107 - score = 17.10; SMART pfam:proteasome (PF00227) at aa 26-209, E()=1.70e-41; proteasome subunit, putative	join(1636545..1636714,1636776..1636863,1637061..1637150,1637246..1637395,1637496..1637708)	Theileria annulata	3862925
TA11340	CDS	TA11340	NC_011098.1	1637862	1639386	D	SMART RING (SM00184) at aa 58-97, E()=5.56e-03; ZnF_NFX (SM00438) at aa 79-99, E()=0.00e+00; uncharacterized protein	join(1637862..1638130,1638198..1638303,1638367..1638412,1638441..1638527,1638805..1638986,1639186..1639284,1639315..1639386)	Theileria annulata	3862924
TA11335	CDS	TA11335	NC_011098.1	1639545	1639937	R	Tap579b07.q1c.cand.37 - score = 8.05; uncharacterized protein	complement(1639545..1639937)	Theileria annulata	3862923
TA11330	CDS	TA11330	NC_011098.1	1640030	1642990	R	Tap579b07.q1c.cand.36 - score = 63.24; SMART pfam:FtsJ (PF01728) at aa 24-202, E()=1.90e-74; uncharacterized protein	complement(join(1640030..1642471,1642567..1642750,1642854..1642990))	Theileria annulata	3862922
TA11325	CDS	TA11325	NC_011098.1	1643152	1643972	R	Tap579b07.q1c.cand.36 - score = 63.24; SMART pfam:ATP-synt_C (PF00137) at aa 17-82, E()=3.30e-04; 113-178, E()=5.80e-09; 4 probable transmembrane helices predicted for TA11325 by TMHMM2.0 at aa 15-37, 58-80, 115-137 and 157-179; Signal anchor predicted for TA11325 by SignalP 2.0 HMM (Signal peptide probability 0.078, signal anchor probability 0.910) with cleavage site probability 0.053 between residues 36 and 37; vacuolar proton-translocating ATPase, putative	complement(join(1643152..1643201,1643264..1643367,1643449..1643733,1643869..1643972))	Theileria annulata	3862921
TA11320	CDS	TA11320	NC_011098.1	1644191	1645000	D	Tap579b07.q1c.C.cand.109 - score = 12.55; SMART pfam:V-SNARE (PF05008) at aa 103-245, E()=4.00e-02; 1 transmembrane domain at aa 247-266; 1 probable transmembrane helix predicted for TA11320 by TMHMM2.0 at aa 247-266; uncharacterized protein	1644191..1645000	Theileria annulata	3862920
TA11315	CDS	TA11315	NC_011098.1	1645201	1646547	D	Tap579b07.q1c.C.cand.110 - score = 25.78; uncharacterized protein	join(1645201..1645555,1645676..1646093,1646123..1646262,1646294..1646547)	Theileria annulata	3862919
TA11310	CDS	TA11310	NC_011098.1	1647717	1650032	D	Tap579b07.q1c.C.cand.111 - score = 48.06; uncharacterized protein	1647717..1650032	Theileria annulata	3862918
TA11305	CDS	TA11305	NC_011098.1	1650085	1650463	R	Tap579b07.q1c.cand.35 - score = 10.85; SMART pfam:S10_plectin (PF03501) at aa 11-106, E()=2.10e-48; 40S ribosomal protein S10, putative	complement(join(1650085..1650353,1650388..1650463))	Theileria annulata	3862917
TA11300	CDS	TA11300	NC_011098.1	1650937	1652433	D	Tap579b07.q1c.C.cand.112 - score = 20.51; uncharacterized protein	join(1650937..1651564,1651691..1652433)	Theileria annulata	3862916
TA11295	CDS	TA11295	NC_011098.1	1652558	1653750	D	Tap579b07.q1c.C.cand.113 - score = 75.73; SMART RRM (SM00360) at aa 214-297, E()=4.03e-19; uncharacterized protein	join(1652558..1652965,1652996..1653148,1653178..1653237,1653268..1653438,1653469..1653546,1653580..1653750)	Theileria annulata	3862914
TA11297	CDS	TA11297	NC_011098.1	1653826	1654296	D	uncharacterized protein	1653826..1654296	Theileria annulata	3862915
TA11285	CDS	TA11285	NC_011098.1	1656454	1657431	D	Tap579b07.q1c.C.cand.114 - score = 12.56; uncharacterized protein	join(1656454..1656503,1656535..1656757,1656787..1656834,1657106..1657201,1657231..1657431)	Theileria annulata	3862913
TA11280	CDS	TA11280	NC_011098.1	1658050	1659204	D	Tap579b07.q1c.C.cand.115 - score = 36.85; uncharacterized protein	join(1658050..1658254,1658293..1658463,1658496..1658582,1658611..1658680,1658713..1658759,1658794..1658838,1658873..1659204)	Theileria annulata	3862912
TA11275	CDS	TA11275	NC_011098.1	1659278	1660478	D	Tap579b07.q1c.C.cand.116 - score = 28.96; SMART pfam:DUF143 (PF02410) at aa 207-314, E()=3.40e-04; uncharacterized protein	join(1659278..1659593,1659624..1659964,1659995..1660098,1660164..1660325,1660409..1660478)	Theileria annulata	3862911
TA11270	CDS	TA11270	NC_011098.1	1660768	1661417	R	Tap579b07.q1c.cand.34 - score = 15.66; SMART pfam:Ribosomal_S7e (PF01251) at aa 3-192, E()=1.60e-43; 40S ribosomal protein S7 (RPS7), putative	complement(join(1660768..1660927,1660999..1661417))	Theileria annulata	3862910
TA11265	CDS	TA11265	NC_011098.1	1662182	1664055	D	Tap579b07.q1c.C.cand.117 - score = 42.42; uncharacterized protein	join(1662182..1663264,1663332..1663414,1663447..1663587,1663620..1664055)	Theileria annulata	3862909
TA11260	CDS	TA11260	NC_011098.1	1664312	1665172	D	Tap579b07.q1c.C.cand.118 - score = 22.65; SMART DnaJ (SM00271) at aa 11-76, E()=3.73e-04; uncharacterized protein	1664312..1665172	Theileria annulata	3862908
TA11255	CDS	TA11255	NC_011098.1	1665211	1666723	R	Tap579b07.q1c.cand.33 - score = 37.83; SMART pfam:Ribosomal_L21p (PF00829) at aa 202-299, E()=1.60e-07; 50S ribosomal protein L21, putative	complement(join(1665211..1665317,1665388..1665493,1665522..1665582,1665612..1665676,1665708..1665747,1665779..1665848,1665879..1665930,1665960..1666100,1666129..1666406,1666445..1666606,1666660..1666723))	Theileria annulata	3862907
TA11250	CDS	TA11250	NC_011098.1	1667086	1668659	D	Tap579b07.q1c.C.cand.119 - score = 55.31; SMART RIO (SM00090) at aa 65-288, E()=5.87e-52; uncharacterized protein	join(1667086..1667461,1667494..1667705,1667738..1667882,1667913..1668033,1668074..1668188,1668219..1668659)	Theileria annulata	3862906
TA11245	CDS	TA11245	NC_011098.1	1668737	1669570	R	uncharacterized protein	complement(1668737..1669570)	Theileria annulata	3862905
TA11240	CDS	TA11240	NC_011098.1	1670610	1671809	D	SMART pfam:UPF0160 (PF03690) at aa 1-334, E()=1.30e-63; uncharacterized protein	join(1670610..1671164,1671194..1671237,1671276..1671300,1671330..1671434,1671465..1671556,1671596..1671809)	Theileria annulata	3862904
TA11235	CDS	TA11235	NC_011098.1	1671876	1673118	R	Tap579b07.q1c.cand.31 - score = 26.23; uncharacterized protein	complement(join(1671876..1672148,1672177..1672287,1672317..1672379,1672409..1672549,1672580..1672755,1672792..1672881,1672917..1673118))	Theileria annulata	3862903
TA11230	CDS	TA11230	NC_011098.1	1673203	1675374	D	Tap579b07.q1c.C.cand.121 - score = 49.00; SMART 1 transmembrane domain at aa 5-27; pfam:Peptidase_M22 (PF00814) at aa 97-403, E()=5.90e-56; 1 probable transmembrane helix predicted for TA11230 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA11230 by SignalP 2.0 HMM (Signal peptide probability 0.846, signal anchor probability 0.000) with cleavage site probability 0.372 between residues 17 and 18; glycoprotease, putative	join(1673203..1673546,1673582..1673721,1673753..1673967,1674003..1674142,1674175..1674297,1674327..1674451,1674511..1674600,1674630..1675212,1675242..1675374)	Theileria annulata	3862902
TA11225	CDS	TA11225	NC_011098.1	1675385	1676671	R	Tap579b07.q1c.cand.30 - score = 26.82; SMART pfam:Ribosomal_S10 (PF00338) at aa 204-301, E()=2.50e-03; 30S ribosomal protein S10-like protein, putative	complement(1675385..1676671)	Theileria annulata	3862901
TA11220	CDS	TA11220	NC_011098.1	1676792	1678943	R	Tap579b07.q1c.cand.29 - score = 60.91; SMART pfam:RLI (PF04088) at aa 19-50, E()=3.90e-12; pfam:fer4 (PF00037) at aa 61-84, E()=6.00e-08; AAA (SM00382) at aa 115-317, E()=6.08e-07; 405-577, E()=2.25e-10; RNAse L inhibitor protein, putative	complement(join(1676792..1676972,1677002..1677103,1677133..1677489,1677521..1677660,1677693..1678472,1678508..1678716,1678802..1678943))	Theileria annulata	3862900
TA11215	CDS	TA11215	NC_011098.1	1679253	1680005	D	Tap579b07.q1c.C.cand.122 - score = 24.09; uncharacterized protein	1679253..1680005	Theileria annulata	3862899
TA11210	CDS	TA11210	NC_011098.1	1680110	1680433	D	Tap579b07.q1c.C.cand.123 - score = 8.89; uncharacterized protein	1680110..1680433	Theileria annulata	3862898
TA11205	CDS	TA11205	NC_011098.1	1680475	1681182	R	Tap579b07.q1c.cand.28 - score = 18.36; uncharacterized protein	complement(1680475..1681182)	Theileria annulata	3862897
TA11200	CDS	TA11200	NC_011098.1	1681725	1682546	D	Tap579b07.q1c.C.cand.124 - score = 22.74; uncharacterized protein	join(1681725..1681881,1681915..1682039,1682079..1682156,1682194..1682283,1682312..1682406,1682435..1682546)	Theileria annulata	3862896
TA11195	CDS	TA11195	NC_011098.1	1682573	1682798	D	Tap579b07.q1c.C.cand.125 - score = 9.44; uncharacterized protein	join(1682573..1682691,1682726..1682798)	Theileria annulata	3862895
TA11190	CDS	TA11190	NC_011098.1	1683144	1685136	D	Tap579b07.q1c.C.cand.126 - score = 54.44; signal recognition particle (SRP), 68-kDa subunit, putative	join(1683144..1683237,1683272..1683573,1683612..1683728,1683760..1684314,1684344..1684383,1684413..1684831,1684861..1685136)	Theileria annulata	3862894
TA11185	CDS	TA11185	NC_011098.1	1685197	1685799	R	Tap579b07.q1c.cand.27 - score = 21.69; SMART pfam:NAC (PF01849) at aa 55-114, E()=2.30e-17; pfam:UBA (PF00627) at aa 160-200, E()=4.60e-04; nascent polypeptide associated complex (NAC), alpha chain, putative	complement(1685197..1685799)	Theileria annulata	3862893
TA11180	CDS	TA11180	NC_011098.1	1686027	1686656	R	Tap579b07.q1c.cand.26 - score = 15.73; uncharacterized protein	complement(1686027..1686656)	Theileria annulata	3862892
TA11175	CDS	TA11175	NC_011098.1	1688067	1688919	D	Tap579b07.q1c.C.cand.127 - score = 32.19; SMART pfam:DUF558 (PF04452) at aa 109-219, E()=8.10e-14; uncharacterized protein	join(1688067..1688290,1688322..1688403,1688515..1688919)	Theileria annulata	3862891
TA11170	CDS	TA11170	NC_011098.1	1689112	1693032	R	Tap579b07.q1c.cand.25 - score = 92.90; uncharacterized protein	complement(join(1689112..1689327,1689362..1692199,1692230..1692608,1692647..1693032))	Theileria annulata	3862890
TA11165	CDS	TA11165	NC_011098.1	1693263	1693781	D	Tap579b07.q1c.C.cand.129 - score = 15.69; uncharacterized protein	1693263..1693781	Theileria annulata	3862889
TA11160	CDS	TA11160	NC_011098.1	1693824	1698230	R	Tap579b07.q1c.cand.24 - score = 90.89; SMART pfam:B-tub_coD (PF05074) at aa 47-1052, E()=2.70e-30; pfam:HEAT_PBS (PF03130) at aa 419-452, E()=9.50e-02; beta-tubulin cofactor D, putative	complement(1693824..1698230)	Theileria annulata	3862888
TA11155	CDS	TA11155	NC_011098.1	1700159	1702003	R	Tap579b07.q1c.cand.23 - score = 147.26; uncharacterized protein	complement(1700159..1702003)	Theileria annulata	3862887
TA11150	CDS	TA11150	NC_011098.1	1702293	1704692	R	Tap579b07.q1c.cand.23 - score = 147.26; SMART pfam:B3_4 (PF03483) at aa 63-202, E()=1.20e-06; pfam:B5 (PF03484) at aa 314-384, E()=2.50e-16; phenylalanyl-tRNA synthetase, putative	complement(join(1702293..1702622,1702653..1702751,1702829..1703190,1703221..1703378,1703451..1703507,1703538..1703614,1703645..1703791,1703822..1704109,1704142..1704271,1704314..1704422,1704457..1704544,1704648..1704692))	Theileria annulata	3862886
TA11145	CDS	TA11145	NC_011098.1	1704930	1706666	R	Tap579b07.q1c.cand.23 - score = 147.26; uncharacterized protein	complement(1704930..1706666)	Theileria annulata	3862885
TA11140	CDS	TA11140	NC_011098.1	1708188	1710490	R	Tap579b07.q1c.cand.22 - score = 54.47; SMART 3 pfam:PPTA (PF01239) at aa 102-132, E()=4.30e-02; 145-174, E()=6.90e-02; 221-249, E()=7.20e-04; Rab geranylgeranyltransferase, putative	complement(join(1708188..1708602,1708634..1708777,1708809..1708931,1708963..1709316,1709346..1709405,1709436..1709475,1709505..1709605,1709641..1709863,1709917..1710056,1710087..1710490))	Theileria annulata	3862884
TA11135	CDS	TA11135	NC_011098.1	1710996	1716715	D	SMART Sec7 (SM00222) at aa 542-945, E()=1.09e-06; vesicle trafficking protein (SEC7 homologue), putative	join(1710996..1711356,1711386..1711510,1711540..1711652,1711686..1711794,1711826..1716715)	Theileria annulata	3862883
TA11130	CDS	TA11130	NC_011098.1	1718516	1720475	D	Tap579b07.q1c.C.cand.132 - score = 39.49; SMART pfam:Peptidase_C48 (PF02902) at aa 298-517, E()=5.80e-23; ubiquitin-like protease (Ul), putative	join(1718516..1719184,1719255..1719437,1719469..1719597,1719681..1720016,1720060..1720334,1720367..1720475)	Theileria annulata	3862882
TA11125	CDS	TA11125	NC_011098.1	1720594	1722055	R	Tap579b07.q1c.cand.21 - score = 26.83; SMAR pfam:PMI_typeI (PF01238) at aa 4-395, E()=7.90e-23; mannose-6 phosphate isomerase, putative	complement(join(1720594..1720842,1720877..1721112,1721185..1722055))	Theileria annulata	3862881
TA11120	CDS	TA11120	NC_011098.1	1722298	1724585	D	Tap579b07.q1c.C.cand.133 - score = 59.19; SMART STYKc (SM00221) at aa 299-543, E()=1.37e-03; serine/threonine protein kinase, putative	join(1722298..1723654,1723702..1724585)	Theileria annulata	3862880
TA11115	CDS	TA11115	NC_011098.1	1724820	1726806	D	SMART pfam:Gpi1 (PF05024) at aa 277-462, E()=3.40e-09; 7 probable transmembrane helices predicted for TA11115 by TMHMM2.0 at aa 199-221, 241-258, 278-300, 313-335, 401-423, 445-467 and 482-504; N-acetylglucosaminyl transferase, putative	join(1724820..1724972,1725040..1725179,1725211..1725335,1725364..1725744,1725815..1725932,1725974..1726327,1726361..1726524,1726559..1726806)	Theileria annulata	3862879
TA11110	CDS	TA11110	NC_011098.1	1727164	1728467	D	SMART pfam:Amidohydro_1 (PF01979) at aa 3-361, E()=1.80e-06; dihydroorotase, putative	join(1727164..1727255,1727326..1727509,1727540..1727608,1727639..1727767,1727792..1728102,1728145..1728205,1728233..1728329,1728358..1728467)	Theileria annulata	3862878
TA11105	CDS	TA11105	NC_011098.1	1728514	1732114	R	Tap579b07.q1c.cand.20 - score = 72.94; SMART pfam:GFLV_dehydrog_N (PF02812) at aa 327-719, E()=6.50e-12; pfam:GFLV_dehydrog (PF00208) at aa 736-1058, E()=4.20e-37; glutamate dehydrogenase, putative	complement(join(1728514..1730738,1730827..1732114))	Theileria annulata	3862877
TA11100	CDS	TA11100	NC_011098.1	1733167	1737728	D	Tap579b07.q1c.C.cand.135 - score = 93.52; uncharacterized protein	join(1733167..1736085,1736165..1736795,1736855..1737045,1737075..1737200,1737273..1737397,1737432..1737551,1737641..1737728)	Theileria annulata	3862876
TA11095	CDS	TA11095	NC_011098.1	1738307	1739494	D	Tap579b07.q1c.C.cand.136 - score = 17.46; SMART 7 transmembrane domains at aa 67-89, 94-116, 152-169, 184-203, 210-232, 242-264 and 331-353; 7 probable transmembrane helices predicted for TA11095 by TMHMM2.0 at aa 67-89, 94-116, 152-169, 184-203, 210-232, 242-264 and 331-353; uncharacterized protein	1738307..1739494	Theileria annulata	3862875
TA11090	CDS	TA11090	NC_011098.1	1739780	1742634	D	Tap579b07.q1c.C.cand.137 - score = 64.41; SMART DEXDc (SM00487) at aa 353-575, E()=2.40e-24; HELICc (SM00490) at aa 757-862, E()=2.83e-12; DEAD-box family helicase, putative	join(1739780..1742165,1742237..1742634)	Theileria annulata	3862874
TA11085	CDS	TA11085	NC_011098.1	1742715	1746425	R	SMART 2 S1 domains (SM00316) at aa 114-185, E()=3.44e-12; 204-285, E()=6.14e-09; pfam:Sas10_Utp3 (PF04000) at aa 540-944, E()=9.30e-02; uncharacterized protein	complement(join(1742715..1743054,1743086..1743865,1743896..1744714,1744773..1744844,1744873..1744964,1745033..1745181,1745251..1745342,1745378..1745601,1745631..1745677,1745708..1745981,1746065..1746146,1746217..1746425))	Theileria annulata	3862873
TA11080	CDS	TA11080	NC_011098.1	1746437	1747096	R	uncharacterized protein	complement(1746437..1747096)	Theileria annulata	3862872
TA11075	CDS	TA11075	NC_011098.1	1747888	1748494	R	Tap579b07.q1c.cand.17 - score = 12.22; SMART pfam:Ribosomal_L7Ae (PF01248) at aa 21-115, E()=4.90e-31; high-mobility group protein, putative	complement(join(1747888..1748046,1748152..1748255,1748368..1748494))	Theileria annulata	3862871
TA11070	CDS	TA11070	NC_011098.1	1748964	1750469	D	Tap579b07.q1c.C.cand.138 - score = 36.14; SMART pfam:S-AdoMet_synt (PF00438) at aa 12-112, E()=5.20e-49; pfam:S-AdoMet_syntD2 (PF02772) at aa 124-247, E()=6.10e-69; pfam:S-AdoMet_syntD3 (PF02773) at aa 249-402, E()=2.70e-70; S-adenosylmethionne synthetase, putative	join(1748964..1749095,1749132..1749279,1749325..1749429,1749511..1749752,1749864..1750469)	Theileria annulata	3862870
TA11065	CDS	TA11065	NC_011098.1	1750631	1752440	D	Tap579b07.q1c.C.cand.139 - score = 39.29; C terminal extensio clearly relies on P. yoelii; SMART pfam:Amidase (PF01425) at aa 65-519, E()=1.90e-37; 1 probable transmembrane helix predicted for TA11065 by TMHMM2.0 at aa 475-497; glutamyl-tRNA amidotransferase, subunit, putative	join(1750631..1751012,1751041..1751539,1751579..1751946,1752047..1752228,1752261..1752440)	Theileria annulata	3862869
TA11060	CDS	TA11060	NC_011098.1	1752775	1753479	D	Tap579b07.q1c.C.cand.140 - score = 31.16; SMART RING (SM00184) at aa 23-61, E()=9.37e-10; 2 transmembrane domains at aa 114-133, 166-188; 2 probable transmembrane helices predicted for TA11060 by TMHMM2.0 at aa 114-133 and 166-188; uncharacterized protein	join(1752775..1753025,1753062..1753125,1753215..1753362,1753373..1753479)	Theileria annulata	3862868
TA11055	CDS	TA11055	NC_011098.1	1753633	1754211	D	calcium-binding protein; SMART pfam:efhand (PF00036) at aa 76-104, E()=3.10e-03; uncharacterized protein	join(1753633..1753683,1753715..1753768,1753838..1753993,1754023..1754114,1754145..1754211)	Theileria annulata	3862867
TA11050	CDS	TA11050	NC_011098.1	1754257	1756010	R	Tap579b07.q1c.cand.16 - score = 42.16; 1 probable transmembrane helix predicted for TA11050 by TMHMM2.0 at aa 9-31; Signal peptide predicted for TA11050 by SignalP 2.0 HMM (Signal peptide probability 0.676, signal anchor probability 0.317) with cleavage site probability 0.439 between residues 25 and 26; uncharacterized protein	complement(join(1754257..1755785,1755902..1756010))	Theileria annulata	3862866
TA11025	CDS	TA11025	NC_011098.1	1756488	1758857	R	Tap579b07.q1c.cand.15 - score = 35.52; SMART pfam:Patatin (PF01734) at aa 221-395, E()=2.60e-02; phospholipase, putative	complement(1756488..1758857)	Theileria annulata	3862861
TA10970	CDS	TA10970	NC_011098.1	1759224	1761753	R	Tap579b07.q1c.cand.14 - score = 49.32; SMART AAA (SM00382) at aa 547-696, E()=1.64e-03; uncharacterized protein	complement(join(1759224..1759544,1759579..1759787,1759818..1760371,1760402..1761257,1761287..1761520,1761561..1761753))	Theileria annulata	3862850
TA10965	CDS	TA10965	NC_011098.1	1762247	1763525	D	Tap579b07.q1c.C.cand.141 - score = 26.10; SMART SEC14 (SM00516) at aa 132-287, E()=3.80e-07; phosphoinositide binding protein (SEC14 homologue), putative	join(1762247..1762791,1762862..1763525)	Theileria annulata	3862849
TA10860	CDS	TA10860	NC_011098.1	1763581	1764615	R	Tap579b07.q1c.cand.13 - score = 14.92; SMART 3 transmembrane domains at aa 218-240, 253-275 and 290-311; 3 probable transmembrane helices predicted for TA10860 by TMHMM2.0 at aa 218-240, 253-275 and 290-311; uncharacterized protein	complement(1763581..1764615)	Theileria annulata	3862828
TA10855	CDS	TA10855	NC_011098.1	1764981	1768415	D	Tap579b07.q1c.C.cand.142 - score = 94.63; uncharacterized protein	1764981..1768415	Theileria annulata	3862827
TA10750	CDS	TA10750	NC_011098.1	1769079	1769988	R	Tap579b07.q1c.cand.12 - score = 11.97; SMART 2 transmembrane domains at aa 180-202 and 233-255; 2 probable transmembrane helices predicted for TA10750 by TMHMM2.0 at aa 180-202 and 233-255; uncharacterized protein	complement(join(1769079..1769581,1769639..1769831,1769863..1769988))	Theileria annulata	3862806
TA10745	CDS	TA10745	NC_011098.1	1770456	1772711	D	Tap579b07.q1c.C.cand.143 - score = 59.27; SMART 4 WD (SM00320) domains at aa 280-319, E()=1.64e+02; 352-398, E()=3.27e-04; 486-525, E()=2.66e+00; 528-575, E()=2.47e+01; uncharacterized protein	1770456..1772711	Theileria annulata	3862805
TA10690	CDS	TA10690	NC_011098.1	1772977	1773600	D	SMART UBCc (SM00212) at aa 20-170, E()=1.24e-50; ubiquitin-conjugating enzyme E2, putative	join(1772977..1773037,1773061..1773399,1773488..1773600)	Theileria annulata	3862644
TA10585	CDS	TA10585	NC_011098.1	1773731	1777150	R	Tap579b07.q1c.cand.11 - score = 68.58; SMART 6 HAT (SM00386) domains at aa82-113, E()=1.46e+00; 119-155, E()=3.91e-01; 167-200, E()=5.59e+02; 225-259, E()=5.41e+02; 261-294, E()=1.88e+01; 295-327, E()=4.63e+02; pfam:rrm (PF00076) at aa 817-895, E()=1.60e-02; RRM (SM00360) at aa 1017-1088, E()=8.20e-11; uncharacterized protein	complement(1773731..1777150)	Theileria annulata	3862711
TA10530	CDS	TA10530	NC_011098.1	1777877	1780777	R	Tap579b07.q1c.cand.10 - score = 37.31; SMART 10 transmembrane domains at aa 23-45, 66-88, 93-115, 120-142, 152-174, 187-204, 742-764, 785-807, 817-839 and 852-874; 10 probable transmembrane helices predicted for TA10530 by TMHMM2.0 at aa 23-45, 66-88, 93-115, 120-142, 152-174, 187-204, 742-764, 785-807, 817-839 and 852-874; uncharacterized protein	complement(1777877..1780777)	Theileria annulata	3862690
TA10475	CDS	TA10475	NC_011098.1	1781291	1783960	R	Tap579b07.q1c.cand.9 - score = 28.81; SMART 10 transmembrane domains at aa 81-103, 118-140, 147-169, 175-197, 210-232, 674-696, 703-725, 740-762, 775-794 and 814-836; 10 probable transmembrane helices predicted for TA10475 by TMHMM2.0 at aa 81-103, 118-140, 147-169, 175-197, 210-232, 674-696, 703-725, 740-762, 775-794 and 814-836; uncharacterized protein	complement(1781291..1783960)	Theileria annulata	3862679
TA10420	CDS	TA10420	NC_011098.1	1784387	1786732	R	Tap579b07.q1c.cand.8 - score = 21.64; SMART 11 transmembrane domains at aa 4-23 90-112, 141-160, 167-189, 204-226, 231-250, 265-287, 561-583, 596-618, 630-652, and 667-689; 11 probable transmembrane helices predicted for TA10420 by TMHMM2.0 at aa 4-23, 90-112, 141-160, 167-189, 204-226, 231-250, 265-287, 561-583, 596-618, 630-652 and 667-689; uncharacterized protein	complement(1784387..1786732)	Theileria annulata	3862561
TA10365	CDS	TA10365	NC_011098.1	1787209	1789004	R	Tap579b07.q1c.cand.7 - score = 36.78; SMART pfam:IBB (PF01749) at aa 2-110, E()=2.30e-04; 8 ARM (SM00185) domains at aa 119-160, E()=2.06e-04; 162-202, E()=2.80e-08; 204-245, E()=5.64e-04; 247-286, E()=1.34e+01; 288-328, E()=1.74e-04; 220-370, E()=4.02e-09; 372-412, E()=1.51e-04; 415-455, E()=3.52e+00; importin alpha, putative	complement(join(1787209..1787388,1787427..1788041,1788125..1788422,1788487..1789004))	Theileria annulata	3862550
TA10310	CDS	TA10310	NC_011098.1	1789359	1790598	R	SMART 2 transmembrane domains at aa 21-39 and 59-81; pfam:Nucleoplasmin (PF03066) at aa 87-230, E()=7.10e-03; 2 probable transmembrane helices predicted for TA10310 by TMHMM2.0 at aa 21-39 and 59-81; Signal anchor predicted for TA10310 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.794) with cleavage site probability 0.001 between residues 34 and 35; uncharacterized protein	complement(join(1789359..1789589,1789684..1789881,1789914..1789974,1790042..1790070,1790203..1790235,1790458..1790598))	Theileria annulata	3862627
TA10305	CDS	TA10305	NC_011098.1	1790954	1791411	D	SMART pfam:Ribosomal_S17 (PF00366) at aa 39-118, E()=5.10e-04; ribosomal protein S17, putative	join(1790954..1791032,1791101..1791411)	Theileria annulata	3862626
TA10200	CDS	TA10200	NC_011098.1	1791489	1792271	R	Tap579b07.q1c.cand.5 - score = 25.10; uncharacterized protein	complement(1791489..1792271)	Theileria annulata	3862536
TA10195	CDS	TA10195	NC_011098.1	1792500	1793346	D	SMART pfam:RNA_pol_Rpb5_N (PF03871) at aa 1-90, E()=6.70e-12; pfam:RNA_pol_Rpb5_C (PF01191) at aa 132-205, E()=2.00e-41; DNA-directed RNA polymerase, subunit (RPB5 homologue), putative	join(1792500..1792642,1792675..1792782,1792816..1792897,1792998..1793141,1793172..1793246,1793281..1793346)	Theileria annulata	3862535
TA10090	CDS	TA10090	NC_011098.1	1793440	1794505	R	Tap579b07.q1c.cand.4 - score = 18.98; SMART 3 WD40 (SM00320) domains at aa 2-38, E()=9.55e+00; 242-279, E()=4.95e+00; 282-321, E()=3.05e-04; uncharacterized protein	complement(join(1793440..1794014,1794075..1794284,1794319..1794505))	Theileria annulata	3863337
TA10085	CDS	TA10085	NC_011098.1	1795022	1796191	D	Tap579b07.q1c.C.cand.147 - score = 28.94; SMART pfam:Rieske (PF00355) at aa 238-343, E()=3.80e-09; 1 probable transmembrane helix predicted for TA10085 by TMHMM2.0 at aa 176-198; ubiquinol-cytochrome c reductase, putative	join(1795022..1795645,1795676..1795806,1795891..1796191)	Theileria annulata	3863336
TA10030	CDS	TA10030	NC_011098.1	1796755	1801884	D	Tap579b07.q1c.C.cand.148 - score = 83.00; SMART 7 transmembrane domains at aa 144-166, 173-195, 205-227, 286-308, 323-345, 397-419 and 439-461; 2 AAA (SM00382) domains at aa 569-703, E()=4.40e-04; 1425-1682, E()=3.63e-01; pfam:ABC_membrane (PF00664) at aa 896-1186, E()=2.10e-02; 12 probable transmembrane helices predicted for TA10030 by TMHMM2.0 at aa 144-166, 173-195, 205-227, 286-308, 323-345, 397-419, 439-461, 882-904, 954-976, 1026-1048, 1053-1075 and 1132-1154; (subtelomeric) ABC-transporter protein family member, putative	1796755..1801884	Theileria annulata	3863325
TA09975	CDS	TA09975	NC_011098.1	1802691	1804019	D	Tap579b07.q1c.C.cand.149 - score = 16.32; Signal peptide predicted for TA09975 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.605 between residues 22 and 23; uncharacterized protein	1802691..1804019	Theileria annulata	3863314
TA09920	CDS	TA09920	NC_011098.1	1804732	1806714	D	Tap579b07.q1c.C.cand.150 - score = 36.14; SMART 2 pfam:DUF529 (PF04385) at aa 40-181, E()=1.60e-40; 476-617, E()=4.00e-22; SfiI-subtelomeric fragment related protein family member, putative	1804732..1806714	Theileria annulata	3863108
TA09865	CDS	TA09865	NC_011098.1	1807516	1809609	D	Tap579b07.q1c.C.cand.151 - score = 38.90; 1 probable transmembrane helix predicted for TA09865 by TMHMM2.0 at aa 5-24; Signal peptide predicted for TA09865 by SignalP 2.0 HMM (Signal peptide probability 0.700, signal anchor probability 0.292) with cleavage site probability 0.677 between residues 23 and 24; Theileria-specific sub-telomeric protein, SVSP family	1807516..1809609	Theileria annulata	3863097
TA09810	CDS	TA09810	NC_011098.1	1810696	1812141	D	Tap579b07.q1c.C.cand.152 - score = 14.18; 1 probable transmembrane helix predicted for TA09810 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09810 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.720) with cleavage site probability 0.000 between residues 40 and 41; Theileria-specific sub-telomeric protein, SVSP family member, putative	1810696..1812141	Theileria annulata	3863300
TA09805	CDS	TA09805	NC_011098.1	1812413	1814080	D	Tap579b07.q1c.C.cand.153 - score = 36.40; Signal peptide predicted for TA09805 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.063) with cleavage site probability 0.449 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family member, putative	1812413..1814080	Theileria annulata	3863299
TA09800	CDS	TA09800	NC_011098.1	1814334	1816532	D	Tap579b07.q1c.C.cand.154 - score = 42.52; Signal peptide predicted for TA09800 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.063) with cleavage site probability 0.449 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family member, putative	1814334..1816532	Theileria annulata	3863298
TA09795	CDS	TA09795	NC_011098.1	1816817	1818997	D	Tap579b07.q1c.C.cand.155 - score = 33.22; Signal peptide predicted for TA09795 by SignalP 2.0 HMM (Signal peptide probability 0.914, signal anchor probability 0.000) with cleavage site probability 0.885 between residues 18 and 19; Theileria-specific sub-telomeric protein, SVSP family member, putative	1816817..1818997	Theileria annulata	3863297
TA09790	CDS	TA09790	NC_011098.1	1819165	1821225	D	Tap579b07.q1c.C.cand.156 - score = 46.01; Signal peptide predicted for TA09790 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.063) with cleavage site probability 0.449 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family member, putative	1819165..1821225	Theileria annulata	3863296
TA09785	CDS	TA09785	NC_011098.1	1821852	1823660	D	Tap579b07.q1c.C.cand.157 - score = 155.73; 1 probable transmembrane helix predicted for TA09785 by TMHMM2.0 at aa 5-22; Signal peptide predicted for TA09785 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.039) with cleavage site probability 0.936 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family member, putative	1821852..1823660	Theileria annulata	3863295
TA09780	CDS	TA09780	NC_011098.1	1824870	1830224	D	Tap579b07.q1c.C.cand.157 - score = 155.73; SMART 6 pfam:DUF529 (PF04385) domains at aa 378-528, E()=8.30e-08; 678-828, E()=1.50e-22; 976-1116, E()=6.00e-63; 1191-1332, E()=1.80e-50; 1376-1537, E()=1.60e-58; 1581-1722, E()=7.30e-70; SfiI-subtelomeric fragment related protein family member, putative	1824870..1830224	Theileria annulata	3863294
TA09775	CDS	TA09775	NC_011098.1	1831115	1833475	D	Tap579b07.q1c.C.cand.158 - score = 49.60; SMART pfam:DUF529 (PF04385) at aa 145-286, E()=4.30e-73; 329-478, E()=1.10e-59; 543-681, E()=2.50e-74; Signal peptide predicted for TA09775 by SignalP 2.0 HMM (Signal peptide probability 0.875, signal anchor probability 0.000) with cleavage site probability 0.791 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	1831115..1833475	Theileria annulata	3863293
TA09770	CDS	TA09770	NC_011098.1	1834424	1839549	D	Tap579b07.q1c.C.cand.159 - score = 92.69; SMART pfam:EMA (PF02488) at aa 964-1220, E()=1.00e-02; pfam:DUF529 (PF04385) at aa 94-232, E()=2.70e-67; 415-552, E()=1.00e-57; 595-757, E()=8.20e-58; 805-942, E()=2.00e-57; 985-1095, E()=8.40e-09; 1111-1234, E()=6.00e-39; Signal peptide predicted for TA09770 by SignalP 2.0 HMM (Signal peptide probability 0.975, signal anchor probability 0.000) with cleavage site probability 0.696 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative	join(1834424..1839194,1839236..1839549)	Theileria annulata	3863292
Tap370b08.q2ca38.01	CDS	Tap370b08.q2ca38.01	NT_167255.1	1	1519	D	SMART pfam:COX1 (PF00115) at aa 38-497, E()=5.90e-166; cytochrome C oxidase subunit I (COX1 homologue), putative	<1..1519	Theileria annulata	3864552
Tap370b08.q2ca38.02c	CDS	Tap370b08.q2ca38.02c	NT_167255.1	2326	3124	R	SMART pfam:COX3 (PF00520) at aa 56-264, E()=6.00e-05; cytochrome C oxidase subunit III (COX3 homologue), putative	complement(join(2326..3090,3122..3124))	Theileria annulata	3864553
Tap370b08.q2ca38.03c	CDS	Tap370b08.q2ca38.03c	NT_167255.1	4452	5543	R	SMART pfam:cytochrome_b_N (PF00033) at aa 1-190, E()=3.00e-44; pfam:cytochrome_b_C (PF00032) at aa 246-351, E()=5.50e-06; 1 transmembrane domain at aa 215-237; cytochrome B, putative	complement(4452..5543)	Theileria annulata	3864554
TA17495	mRNA	TA17495	NC_011129.2	1	704	R	TA17495	complement(<1..>704)	Theileria annulata	3864312
TA17500	mRNA	TA17500	NC_011129.2	2448	4289	R	TA17500	complement(join(<2448..2675,2687..2977,3054..>4289))	Theileria annulata	3864313
TA17505	mRNA	TA17505	NC_011129.2	4455	12653	R	TA17505	complement(<4455..>12653)	Theileria annulata	3864314
TA09760	mRNA	TA09760	NC_011129.2	14409	15083	R	TA09760	complement(<14409..>15083)	Theileria annulata	3864343
TA09756	mRNA	TA09756	NC_011129.2	15519	16016	D	TA09756	<15519..>16016	Theileria annulata	3864342
TA09755	mRNA	TA09755	NC_011129.2	16715	17212	D	TA09755	<16715..>17212	Theileria annulata	3864341
TA09750	mRNA	TA09750	NC_011129.2	17321	18259	R	TA09750	complement(join(<17321..17431,17537..17633,17663..17856,17887..18024,18055..18159,18191..>18259))	Theileria annulata	3864340
TA09745	mRNA	TA09745	NC_011129.2	19682	20645	R	TA09745	complement(join(<19682..19947,19977..20469,20502..>20645))	Theileria annulata	3864339
TA09740	mRNA	TA09740	NC_011129.2	20925	24083	R	TA09740	complement(join(<20925..21193,21286..21386,21423..21517,21837..22115,22219..22276,22334..22420,22453..22492,22542..22677,22707..22949,23038..23097,23193..>24083))	Theileria annulata	3864338
TA09735	mRNA	TA09735	NC_011129.2	24180	25901	D	TA09735	<24180..>25901	Theileria annulata	3864337
TA09730	mRNA	TA09730	NC_011129.2	26499	27412	R	TA09730	complement(join(<26499..26729,26814..26911,26943..27030,27118..27222,27257..>27412))	Theileria annulata	3864336
TA09725	mRNA	TA09725	NC_011129.2	27626	29456	R	TA09725	complement(join(<27626..27764,27795..27891,27921..28118,28535..28807,29216..>29456))	Theileria annulata	3864335
TA09720	mRNA	TA09720	NC_011129.2	29587	31299	D	TA09720	join(<29587..29668,29698..29943,30478..30581,30964..>31299)	Theileria annulata	3864334
TA09715	mRNA	TA09715	NC_011129.2	31429	32064	D	TA09715	join(<31429..31722,31798..>32064)	Theileria annulata	3864333
TA09710	mRNA	TA09710	NC_011129.2	32569	34767	D	TA09710	<32569..>34767	Theileria annulata	3864332
TA09705	mRNA	TA09705	NC_011129.2	35529	37628	R	TA09705	complement(join(<35529..35636,35672..35804,36389..36902,37140..37217,37364..>37628))	Theileria annulata	3864331
TA09700	mRNA	TA09700	NC_011129.2	38037	38660	R	TA09700	complement(<38037..>38660)	Theileria annulata	3864330
TA09695	mRNA	TA09695	NC_011129.2	39215	39634	D	TA09695	join(<39215..39397,39428..>39634)	Theileria annulata	3864329
TA09690	mRNA	TA09690	NC_011129.2	39696	41536	D	TA09690	join(<39696..39813,39870..>41536)	Theileria annulata	3864328
TA09685	mRNA	TA09685	NC_011129.2	42287	43567	R	TA09685	complement(join(<42287..42874,43150..43383,43502..>43567))	Theileria annulata	3864092
TA09680	mRNA	TA09680	NC_011129.2	44253	46847	R	TA09680	complement(join(<44253..44513,44659..44788,44896..45391,45621..45833,46223..>46847))	Theileria annulata	3864091
TA09675	mRNA	TA09675	NC_011129.2	48407	49027	D	TA09675	<48407..>49027	Theileria annulata	3864090
TA09670	mRNA	TA09670	NC_011129.2	49214	50032	R	TA09670	complement(<49214..>50032)	Theileria annulata	3864089
TA09665	mRNA	TA09665	NC_011129.2	50223	52519	D	TA09665	join(<50223..50306,50340..50372,50487..50623,50716..50920,51811..52153,52323..>52519)	Theileria annulata	3864088
TA09660	mRNA	TA09660	NC_011129.2	52787	54043	R	TA09660	complement(join(<52787..52972,53251..53421,53656..53782,53901..>54043))	Theileria annulata	3864087
TA09655	mRNA	TA09655	NC_011129.2	54191	54915	D	TA09655	join(<54191..54394,54547..>54915)	Theileria annulata	3864086
TA09650	mRNA	TA09650	NC_011129.2	56303	57709	D	TA09650	join(<56303..56420,56494..56567,56749..57121,57312..57370,57402..57476,57530..>57709)	Theileria annulata	3864085
TA09645	mRNA	TA09645	NC_011129.2	58326	60463	R	TA09645	complement(join(<58326..58390,58466..58694,58798..58869,59245..59319,59370..59440,59552..59702,59735..59787,59909..60008,60197..>60463))	Theileria annulata	3864084
TA09640	mRNA	TA09640	NC_011129.2	60829	64173	R	TA09640	complement(join(<60829..60938,61205..61408,61671..61813,61919..61970,62064..62161,62246..62334,62552..62670,62816..63109,63682..63732,63889..63955,64060..>64173))	Theileria annulata	3864083
TA09635	mRNA	TA09635	NC_011129.2	64296	65903	D	TA09635	join(<64296..64421,64538..64758,64841..64978,65108..>65903)	Theileria annulata	3864082
TA09630	mRNA	TA09630	NC_011129.2	65960	66121	R	TA09630	complement(<65960..>66121)	Theileria annulata	3864081
TA09625	mRNA	TA09625	NC_011129.2	66971	70502	R	TA09625	complement(join(<66971..67676,67707..68103,68520..69461,69834..69915,69949..70051,70157..70272,70365..>70502))	Theileria annulata	3864080
TA09620	mRNA	TA09620	NC_011129.2	70615	74154	R	TA09620	complement(<70615..>74154)	Theileria annulata	3864079
TA09615	mRNA	TA09615	NC_011129.2	75362	79330	R	TA09615	complement(<75362..>79330)	Theileria annulata	3864078
TA09610	mRNA	TA09610	NC_011129.2	80506	85340	R	TA09610	complement(join(<80506..85005,85230..>85340))	Theileria annulata	3864077
TA09605	mRNA	TA09605	NC_011129.2	85606	87352	R	TA09605	complement(join(<85606..86059,86172..86453,86537..86597,86655..86692,86722..86805,86873..86954,86987..87044,87086..87210,87304..>87352))	Theileria annulata	3864076
TA09600	mRNA	TA09600	NC_011129.2	87783	91313	D	TA09600	join(<87783..88206,88500..88910,89003..89241,89276..89613,89664..90711,90834..>91313)	Theileria annulata	3864075
TA09590	mRNA	TA09590	NC_011129.2	91424	93040	R	TA09590	complement(join(<91424..92140,92434..92568,92619..92746,92917..>93040))	Theileria annulata	3864074
TA09585	mRNA	TA09585	NC_011129.2	93453	94201	R	TA09585	complement(join(<93453..93880,93988..>94201))	Theileria annulata	3864073
TA09580	mRNA	TA09580	NC_011129.2	94549	96701	D	TA09580	join(<94549..94571,94686..94822,95016..95195,96181..>96701)	Theileria annulata	3864522
TA09575	mRNA	TA09575	NC_011129.2	97516	99618	R	TA09575	complement(<97516..>99618)	Theileria annulata	3864521
TA09570	mRNA	TA09570	NC_011129.2	99620	100824	R	TA09570	complement(join(<99620..99729,99763..99810,99841..100095,100566..>100824))	Theileria annulata	3864520
TA09565	mRNA	TA09565	NC_011129.2	100997	101944	D	TA09565	<100997..>101944	Theileria annulata	3864519
TA09560	mRNA	TA09560	NC_011129.2	102295	112476	D	TA09560	<102295..>112476	Theileria annulata	3864518
TA09555	mRNA	TA09555	NC_011129.2	112797	119969	D	TA09555	join(<112797..119729,119790..>119969)	Theileria annulata	3864517
TA09550	mRNA	TA09550	NC_011129.2	120108	120761	D	TA09550	<120108..>120761	Theileria annulata	3864516
TA09545	mRNA	TA09545	NC_011129.2	121010	121844	R	TA09545	complement(join(<121010..121177,121251..>121844))	Theileria annulata	3864515
TA09540	mRNA	TA09540	NC_011129.2	122118	122858	R	TA09540	complement(<122118..>122858)	Theileria annulata	3864514
TA09535	mRNA	TA09535	NC_011129.2	122936	124182	R	TA09535	complement(join(<122936..123610,123704..124042,124123..>124182))	Theileria annulata	3864513
TA09530	mRNA	TA09530	NC_011129.2	124667	126492	D	TA09530	join(<124667..124807,124903..125052,125210..125368,125447..125563,125683..125840,125901..125971,126074..>126492)	Theileria annulata	3864512
TA09525	mRNA	TA09525	NC_011129.2	126549	127562	R	TA09525	complement(<126549..>127562)	Theileria annulata	3864511
TA09520	mRNA	TA09520	NC_011129.2	128076	128330	R	TA09520	complement(<128076..>128330)	Theileria annulata	3864510
TA09515	mRNA	TA09515	NC_011129.2	128647	129230	D	TA09515	join(<128647..128764,128893..>129230)	Theileria annulata	3864509
TA09510	mRNA	TA09510	NC_011129.2	129465	131036	D	TA09510	<129465..>131036	Theileria annulata	3864508
TA09505	mRNA	TA09505	NC_011129.2	131537	133108	D	TA09505	<131537..>133108	Theileria annulata	3864507
TA16700	mRNA	TA16700	NC_011129.2	133664	134866	D	TA16700	<133664..>134866	Theileria annulata	3863677
TA16695	mRNA	TA16695	NC_011129.2	135117	139601	R	TA16695	complement(join(<135117..135449,135482..135734,135853..136134,136228..>139601))	Theileria annulata	3863676
TA16690	mRNA	TA16690	NC_011129.2	140584	141667	D	TA16690	join(<140584..141108,141209..>141667)	Theileria annulata	3863675
TA16680	mRNA	TA16680	NC_011129.2	141874	144961	R	TA16680	complement(join(<141874..142161,142249..142336,142387..142568,142598..142965,143041..143494,143546..143710,143779..143856,143928..144059,144187..144471,144530..>144961))	Theileria annulata	3864033
TA16675	mRNA	TA16675	NC_011129.2	145373	146374	D	TA16675	<145373..>146374	Theileria annulata	3864032
TA16670	mRNA	TA16670	NC_011129.2	147293	149315	D	TA16670	join(<147293..147631,147825..148229,148261..148456,148578..148780,148834..149059,149230..>149315)	Theileria annulata	3864031
TA16665	mRNA	TA16665	NC_011129.2	149660	151048	D	TA16665	join(<149660..149692,149724..149895,149984..150123,150229..150344,150385..150437,150469..150720,150870..>151048)	Theileria annulata	3864030
TA16660	mRNA	TA16660	NC_011129.2	151238	156544	R	TA16660	complement(join(<151238..154260,154324..156339,156439..>156544))	Theileria annulata	3864029
TA16655	mRNA	TA16655	NC_011129.2	157317	159016	D	TA16655	join(<157317..158094,158166..>159016)	Theileria annulata	3864028
TA16650	mRNA	TA16650	NC_011129.2	159178	160965	D	TA16650	join(<159178..159321,159403..159422,159454..159587,159650..>160965)	Theileria annulata	3864027
TA16645	mRNA	TA16645	NC_011129.2	161087	163948	R	TA16645	complement(join(<161087..161362,161378..161595,161657..161729,161859..162075,162092..162203,162264..162316,162349..162605,162700..162858,162995..163113,163186..163431,163519..>163948))	Theileria annulata	3864026
TA16640	mRNA	TA16640	NC_011129.2	164735	166835	R	TA16640	complement(join(<164735..165019,165135..165325,165460..165589,165639..165866,165957..166061,166136..166237,166272..166446,166576..>166835))	Theileria annulata	3864025
TA16635	mRNA	TA16635	NC_011129.2	167270	168176	D	TA16635	join(<167270..167390,167492..167533,167594..167903,168020..>168176)	Theileria annulata	3864024
TA16625	mRNA	TA16625	NC_011129.2	168413	170623	D	TA16625	join(<168413..168867,168898..168971,169026..169201,169215..169288,169320..169421,169566..169761,169824..169895,169947..170086,170108..170192,170225..170437,170507..>170623)	Theileria annulata	3864022
TA16620	mRNA	TA16620	NC_011129.2	171591	173067	R	TA16620	complement(join(<171591..172002,172158..172432,172588..172959,172990..>173067))	Theileria annulata	3864021
TA16615	mRNA	TA16615	NC_011129.2	173442	176419	R	TA16615	complement(join(<173442..173760,173812..173896,173946..173989,174027..174095,174150..174253,174350..174508,174558..174697,174792..175686,175793..176020,176061..176203,176365..>176419))	Theileria annulata	3864020
TA16610	mRNA	TA16610	NC_011129.2	176554	178503	D	TA16610	join(<176554..176705,176764..176867,176957..177069,177184..177274,177307..177416,177524..177854,177968..>178503)	Theileria annulata	3864019
TA16605	mRNA	TA16605	NC_011129.2	178672	179787	R	TA16605	complement(<178672..>179787)	Theileria annulata	3864018
TA16600	mRNA	TA16600	NC_011129.2	180077	180982	D	TA16600	<180077..>180982	Theileria annulata	3864017
TA16595	mRNA	TA16595	NC_011129.2	180933	185296	R	TA16595	complement(join(<180933..181259,181284..182420,182507..>185296))	Theileria annulata	3864016
TA16590	mRNA	TA16590	NC_011129.2	185409	190809	R	TA16590	complement(join(<185409..186861,187030..187116,187212..187539,187692..187769,187842..188045,188207..189637,189816..>190809))	Theileria annulata	3864268
TA16585	mRNA	TA16585	NC_011129.2	191515	193901	D	TA16585	join(<191515..192283,192379..192841,192934..193181,193269..193428,193588..193659,193760..>193901)	Theileria annulata	3864267
TA16580	mRNA	TA16580	NC_011129.2	196343	197059	R	TA16580	complement(<196343..>197059)	Theileria annulata	3864266
TA16565	mRNA	TA16565	NC_011129.2	197514	198215	R	TA16565	complement(<197514..>198215)	Theileria annulata	3864263
TA16560	mRNA	TA16560	NC_011129.2	198592	199882	R	TA16560	complement(join(<198592..198957,199073..>199882))	Theileria annulata	3864262
TA16555	mRNA	TA16555	NC_011129.2	200602	202172	D	TA16555	join(<200602..201353,201389..201508,201588..201704,201812..201931,201962..>202172)	Theileria annulata	3864261
TA16550	mRNA	TA16550	NC_011129.2	202420	203847	D	TA16550	<202420..>203847	Theileria annulata	3864260
TA16545	mRNA	TA16545	NC_011129.2	203864	204154	R	TA16545	complement(<203864..>204154)	Theileria annulata	3864259
TA16540	mRNA	TA16540	NC_011129.2	205426	205932	D	TA16540	<205426..>205932	Theileria annulata	3864258
TA16535	mRNA	TA16535	NC_011129.2	207047	209146	D	TA16535	join(<207047..207458,207582..208325,208530..>209146)	Theileria annulata	3864257
TA16530	mRNA	TA16530	NC_011129.2	210788	211981	D	TA16530	join(<210788..210932,210962..211123,211153..211218,211271..211431,211526..211691,211722..>211981)	Theileria annulata	3864256
TA16525	mRNA	TA16525	NC_011129.2	212155	213273	R	TA16525	complement(<212155..>213273)	Theileria annulata	3864255
TA16520	mRNA	TA16520	NC_011129.2	213623	214768	D	TA16520	join(<213623..213829,213925..214300,214330..214432,214489..>214768)	Theileria annulata	3864254
TA16515	mRNA	TA16515	NC_011129.2	215248	217821	D	TA16515	<215248..>217821	Theileria annulata	3864253
TA16510	mRNA	TA16510	NC_011129.2	217858	219021	D	TA16510	join(<217858..218151,218297..218621,218687..218836,218873..>219021)	Theileria annulata	3864252
TA16505	mRNA	TA16505	NC_011129.2	219025	224413	R	TA16505	complement(join(<219025..219276,219306..219494,219524..219716,219778..219947,219991..221519,221572..>224413))	Theileria annulata	3864251
TA16500	mRNA	TA16500	NC_011129.2	224457	227303	R	TA16500	complement(join(<224457..224852,224902..224972,225004..225078,225116..225331,225461..>227303))	Theileria annulata	3864250
TA16495	mRNA	TA16495	NC_011129.2	228010	230013	D	TA16495	join(<228010..228543,228693..229535,229602..229685,229732..229851,229888..>230013)	Theileria annulata	3864249
TA16490	mRNA	TA16490	NC_011129.2	230052	230902	D	TA16490	join(<230052..230095,230124..230572,230605..230750,230783..>230902)	Theileria annulata	3864072
TA16485	mRNA	TA16485	NC_011129.2	231843	233504	D	TA16485	<231843..>233504	Theileria annulata	3864071
TA16480	mRNA	TA16480	NC_011129.2	233688	234065	R	TA16480	complement(join(<233688..233764,233791..233836,233866..233924,233954..>234065))	Theileria annulata	3864070
TA16475	mRNA	TA16475	NC_011129.2	234726	237872	D	TA16475	join(<234726..235880,235950..236053,236110..236257,236310..236388,236463..236563,236601..236760,236817..237010,237045..>237872)	Theileria annulata	3864069
TA16470	mRNA	TA16470	NC_011129.2	237934	239253	R	TA16470	complement(join(<237934..238184,238231..238332,238362..238533,238564..238665,238694..238755,238785..>239253))	Theileria annulata	3864068
TA16460	mRNA	TA16460	NC_011129.2	239830	242376	D	TA16460	join(<239830..240532,240576..240731,240764..241273,241328..>242376)	Theileria annulata	3864066
TA16455	mRNA	TA16455	NC_011129.2	242436	245225	R	TA16455	complement(<242436..>245225)	Theileria annulata	3864065
TA16450	mRNA	TA16450	NC_011129.2	245555	247088	R	TA16450	complement(join(<245555..246402,246457..246586,246617..246718,246819..>247088))	Theileria annulata	3864064
TA16445	mRNA	TA16445	NC_011129.2	247130	248286	R	TA16445	complement(join(<247130..247253,247297..247633,247668..>248286))	Theileria annulata	3864063
TA16440	mRNA	TA16440	NC_011129.2	250106	252058	D	TA16440	<250106..>252058	Theileria annulata	3864062
TA16435	mRNA	TA16435	NC_011129.2	252654	253728	D	TA16435	join(<252654..252725,252757..>253728)	Theileria annulata	3864061
TA16430	mRNA	TA16430	NC_011129.2	254026	254542	D	TA16430	join(<254026..254286,254319..254383,254416..>254542)	Theileria annulata	3864060
TA16425	mRNA	TA16425	NC_011129.2	254738	255660	R	TA16425	complement(join(<254738..254806,254836..254864,254952..>255660))	Theileria annulata	3864059
TA16420	mRNA	TA16420	NC_011129.2	255936	257295	D	TA16420	join(<255936..256532,256587..256839,256940..>257295)	Theileria annulata	3864058
TA16415	mRNA	TA16415	NC_011129.2	257355	259346	R	TA16415	complement(join(<257355..257675,257709..257819,257870..258638,258670..>259346))	Theileria annulata	3864057
TA16400	mRNA	TA16400	NC_011129.2	259531	261246	R	TA16400	complement(join(<259531..260762,260823..>261246))	Theileria annulata	3864054
TA16395	mRNA	TA16395	NC_011129.2	261754	262941	D	TA16395	<261754..>262941	Theileria annulata	3863409
TA16390	mRNA	TA16390	NC_011129.2	263040	264069	R	TA16390	complement(join(<263040..263112,263143..263934,264023..>264069))	Theileria annulata	3863408
TA16385	mRNA	TA16385	NC_011129.2	264399	266837	D	TA16385	<264399..>266837	Theileria annulata	3863407
TA16380	mRNA	TA16380	NC_011129.2	266913	267855	R	TA16380	complement(join(<266913..267572,267605..267715,267757..>267855))	Theileria annulata	3863406
TA16375	mRNA	TA16375	NC_011129.2	268258	270384	R	TA16375	complement(join(<268258..270014,270138..270192,270283..>270384))	Theileria annulata	3863405
TA16370	mRNA	TA16370	NC_011129.2	270921	273932	R	TA16370	complement(<270921..>273932)	Theileria annulata	3863404
TA16365	mRNA	TA16365	NC_011129.2	274186	275731	R	TA16365	complement(join(<274186..274976,275034..275508,275576..>275731))	Theileria annulata	3863403
TA16360	mRNA	TA16360	NC_011129.2	275835	279220	R	TA16360	complement(join(<275835..276017,276097..278462,278520..278805,278861..>279220))	Theileria annulata	3863402
TA16355	mRNA	TA16355	NC_011129.2	280143	281181	D	TA16355	join(<280143..280368,280403..>281181)	Theileria annulata	3863401
TA16345	mRNA	TA16345	NC_011129.2	282009	283472	D	TA16345	<282009..>283472	Theileria annulata	3863399
TA16340	mRNA	TA16340	NC_011129.2	283640	285211	D	TA16340	<283640..>285211	Theileria annulata	3863398
TA16335	mRNA	TA16335	NC_011129.2	285263	285941	R	TA16335	complement(join(<285263..285762,285824..>285941))	Theileria annulata	3863397
TA16330	mRNA	TA16330	NC_011129.2	286040	287826	R	TA16330	complement(join(<286040..286121,286216..286358,286426..286966,287021..287464,287600..>287826))	Theileria annulata	3863396
TA16325	mRNA	TA16325	NC_011129.2	288078	289141	R	TA16325	complement(join(<288078..288164,288234..288285,288339..288518,288550..288928,288959..288989,289046..>289141))	Theileria annulata	3863395
TA16320	mRNA	TA16320	NC_011129.2	289342	290677	R	TA16320	complement(join(<289342..289435,289486..289592,289693..289904,289937..290096,290132..>290677))	Theileria annulata	3863394
TA16315	mRNA	TA16315	NC_011129.2	290834	291819	R	TA16315	complement(join(<290834..290938,290973..291051,291084..291187,291220..291569,291626..291680,291742..>291819))	Theileria annulata	3863393
TA16310	mRNA	TA16310	NC_011129.2	292131	295428	R	TA16310	complement(join(<292131..292226,292279..292561,292595..292629,292683..292763,292831..292978,293100..293236,293308..>295428))	Theileria annulata	3863392
TA16305	mRNA	TA16305	NC_011129.2	296018	296805	D	TA16305	join(<296018..296309,296375..>296805)	Theileria annulata	3863391
TA16300	mRNA	TA16300	NC_011129.2	296878	298722	R	TA16300	complement(join(<296878..297043,297093..297198,297239..298168,298252..298425,298491..>298722))	Theileria annulata	3863390
TA16295	mRNA	TA16295	NC_011129.2	299020	300756	D	TA16295	join(<299020..299259,299299..299379,299464..299579,299620..299962,299991..300134,300192..300320,300351..300531,300611..>300756)	Theileria annulata	3863606
TA16290	mRNA	TA16290	NC_011129.2	300813	302373	D	TA16290	join(<300813..301140,301208..301334,301399..301455,301487..301705,301768..301860,301893..302223,302242..>302373)	Theileria annulata	3863605
TA16285	mRNA	TA16285	NC_011129.2	302569	303957	D	TA16285	<302569..>303957	Theileria annulata	3863604
TA16280	mRNA	TA16280	NC_011129.2	304080	306779	D	TA16280	<304080..>306779	Theileria annulata	3863603
TA16275	mRNA	TA16275	NC_011129.2	306854	308196	R	TA16275	complement(join(<306854..307177,307207..307263,307304..307405,307436..307727,307780..307933,307963..308008,308107..>308196))	Theileria annulata	3863602
TA16270	mRNA	TA16270	NC_011129.2	308456	310156	R	TA16270	complement(<308456..>310156)	Theileria annulata	3863601
TA16265	mRNA	TA16265	NC_011129.2	310543	311744	R	TA16265	complement(join(<310543..311012,311067..311243,311273..>311744))	Theileria annulata	3863600
TA16260	mRNA	TA16260	NC_011129.2	312127	312861	D	TA16260	join(<312127..312190,312272..>312861)	Theileria annulata	3863599
TA16255	mRNA	TA16255	NC_011129.2	312882	317095	R	TA16255	complement(join(<312882..312950,312982..313068,313201..313457,313493..313577,313627..314002,314059..314506,314541..314861,314923..315031,315096..315203,315235..315417,315458..>317095))	Theileria annulata	3863598
TA16250	mRNA	TA16250	NC_011129.2	317286	318007	R	TA16250	complement(join(<317286..317461,317505..317794,317847..>318007))	Theileria annulata	3863597
TA16235	mRNA	TA16235	NC_011129.2	318681	319616	D	TA16235	join(<318681..318733,318800..318852,318883..318986,319018..319176,319246..319365,319395..>319616)	Theileria annulata	3863594
TA16230	mRNA	TA16230	NC_011129.2	319687	322212	R	TA16230	complement(<319687..>322212)	Theileria annulata	3863593
TA16225	mRNA	TA16225	NC_011129.2	322379	323232	R	TA16225	complement(join(<322379..323049,323082..>323232))	Theileria annulata	3863592
TA16220	mRNA	TA16220	NC_011129.2	323701	324692	R	TA16220	complement(join(<323701..324428,324455..>324692))	Theileria annulata	3863591
TA16215	mRNA	TA16215	NC_011129.2	325090	326097	R	TA16215	complement(join(<325090..325763,325878..>326097))	Theileria annulata	3863590
TA16210	mRNA	TA16210	NC_011129.2	326392	327783	D	TA16210	join(<326392..326451,326493..326721,326757..327273,327309..327662,327693..>327783)	Theileria annulata	3863589
TA16205	mRNA	TA16205	NC_011129.2	327906	328385	D	TA16205	<327906..>328385	Theileria annulata	3863588
TA16200	mRNA	TA16200	NC_011129.2	328472	329415	R	TA16200	complement(join(<328472..329193,329226..>329415))	Theileria annulata	3864150
TA16195	mRNA	TA16195	NC_011129.2	329799	330712	R	TA16195	complement(join(<329799..330472,330505..>330712))	Theileria annulata	3864149
TA16190	mRNA	TA16190	NC_011129.2	330967	331877	R	TA16190	complement(join(<330967..331637,331670..>331877))	Theileria annulata	3864148
TA16185	mRNA	TA16185	NC_011129.2	332132	333027	R	TA16185	complement(join(<332132..332805,332865..>333027))	Theileria annulata	3864147
TA16180	mRNA	TA16180	NC_011129.2	333634	335273	R	TA16180	complement(join(<333634..333878,333910..334018,334049..334309,334341..334507,334541..>335273))	Theileria annulata	3864146
TA16175	mRNA	TA16175	NC_011129.2	335659	337136	R	TA16175	complement(join(<335659..335759,335793..335934,335963..336038,336066..336271,336300..336495,336532..336632,336662..336786,336818..336953,336996..>337136))	Theileria annulata	3864145
TA16170	mRNA	TA16170	NC_011129.2	337279	338534	R	TA16170	complement(join(<337279..337893,337924..338176,338206..>338534))	Theileria annulata	3864144
TA16165	mRNA	TA16165	NC_011129.2	339163	339558	D	TA16165	<339163..>339558	Theileria annulata	3864143
TA16160	mRNA	TA16160	NC_011129.2	340651	342075	D	TA16160	<340651..>342075	Theileria annulata	3864142
TA16155	mRNA	TA16155	NC_011129.2	342194	343555	D	TA16155	join(<342194..342224,342254..342512,342646..342778,342834..342911,342944..343227,343351..>343555)	Theileria annulata	3864141
TA16150	mRNA	TA16150	NC_011129.2	344123	345118	R	TA16150	complement(join(<344123..344235,344265..344603,344636..344768,344801..345006,345037..>345118))	Theileria annulata	3864140
TA16145	mRNA	TA16145	NC_011129.2	345973	347199	R	TA16145	complement(join(<345973..346250,346282..346441,346472..346591,346621..346742,346772..347056,347094..>347199))	Theileria annulata	3864139
TA16140	mRNA	TA16140	NC_011129.2	347517	349695	D	TA16140	join(<347517..348347,348382..348947,348977..349113,349142..349269,349299..349469,349501..>349695)	Theileria annulata	3864138
TA17100	mRNA	TA17100	NC_011129.2	349697	350907	R	TA17100	complement(join(<349697..350701,350743..>350907))	Theileria annulata	3864311
TA17095	mRNA	TA17095	NC_011129.2	351276	353545	D	TA17095	join(<351276..351934,351967..352111,352143..352261,352293..352485,352516..352591,352632..352719,352752..352905,352938..353099,353132..353217,353241..353291,353362..>353545)	Theileria annulata	3864310
TA17090	mRNA	TA17090	NC_011129.2	353728	359136	D	TA17090	join(<353728..356338,356406..358706,358754..>359136)	Theileria annulata	3864309
TA17085	mRNA	TA17085	NC_011129.2	359237	360469	D	TA17085	join(<359237..359289,359320..359377,359423..359569,359599..360108,360137..360232,360259..360374,360403..>360469)	Theileria annulata	3864308
TA17080	mRNA	TA17080	NC_011129.2	360639	361932	D	TA17080	join(<360639..360839,360875..360947,360985..361098,361137..361255,361288..361350,361383..361621,361652..361721,361756..>361932)	Theileria annulata	3864444
TA17075	mRNA	TA17075	NC_011129.2	362289	363819	R	TA17075	complement(join(<362289..362921,362952..363120,363150..363217,363246..363360,363391..363641,363670..>363819))	Theileria annulata	3864443
TA17070	mRNA	TA17070	NC_011129.2	363932	365601	D	TA17070	join(<363932..364084,364125..364250,364285..364578,364610..364781,364812..364900,364932..365054,365092..365184,365214..365363,365393..365446,365503..>365601)	Theileria annulata	3864442
TA17065	mRNA	TA17065	NC_011129.2	365735	368221	D	TA17065	join(<365735..365880,365926..366112,366148..366521,366553..366745,366778..366921,366953..367039,367073..367185,367247..367676,367707..367783,367818..368035,368067..>368221)	Theileria annulata	3864441
TA17060	mRNA	TA17060	NC_011129.2	368770	370403	D	TA17060	join(<368770..368881,368925..369036,369068..>370403)	Theileria annulata	3864440
TA17055	mRNA	TA17055	NC_011129.2	370622	371227	D	TA17055	<370622..>371227	Theileria annulata	3864439
TA17050	mRNA	TA17050	NC_011129.2	371415	372260	R	TA17050	complement(<371415..>372260)	Theileria annulata	3864438
TA17045	mRNA	TA17045	NC_011129.2	372803	374354	D	TA17045	join(<372803..372949,373016..373087,373169..373333,373379..373442,373472..373698,373730..374214,374249..>374354)	Theileria annulata	3864437
TA17040	mRNA	TA17040	NC_011129.2	374921	377220	R	TA17040	complement(join(<374921..375512,375563..375782,375815..376834,376869..>377220))	Theileria annulata	3864436
TA17035	mRNA	TA17035	NC_011129.2	377564	380088	R	TA17035	complement(join(<377564..377614,377648..377733,377825..377990,378054..378896,378939..379063,379095..379487,379540..379616,379649..>380088))	Theileria annulata	3864435
TA17030	mRNA	TA17030	NC_011129.2	380992	381936	D	TA17030	join(<380992..381049,381130..381506,381540..381596,381633..381758,381790..>381936)	Theileria annulata	3864434
TA17025	mRNA	TA17025	NC_011129.2	382462	383378	D	TA17025	join(<382462..382480,382621..>383378)	Theileria annulata	3864433
TA17020	mRNA	TA17020	NC_011129.2	383818	387038	D	TA17020	join(<383818..384053,384147..384251,384282..384552,384615..385323,385367..385542,385625..386213,386259..386598,386675..>387038)	Theileria annulata	3864432
TA17015	mRNA	TA17015	NC_011129.2	387115	388746	R	TA17015	complement(<387115..>388746)	Theileria annulata	3864431
TA17010	mRNA	TA17010	NC_011129.2	388937	390387	R	TA17010	complement(join(<388937..389257,389319..389472,389541..389619,389683..390267,390321..>390387))	Theileria annulata	3864430
TA17005	mRNA	TA17005	NC_011129.2	390530	392536	R	TA17005	complement(<390530..>392536)	Theileria annulata	3864429
TA17000	mRNA	TA17000	NC_011129.2	392914	393558	D	TA17000	join(<392914..393320,393384..>393558)	Theileria annulata	3864428
TA16995	mRNA	TA16995	NC_011129.2	393619	395023	R	TA16995	complement(join(<393619..393819,393852..394009,394041..394107,394138..394214,394280..394422,394455..394706,394737..>395023))	Theileria annulata	3864427
TA16990	mRNA	TA16990	NC_011129.2	395568	397975	R	TA16990	complement(join(<395568..395833,395863..396590,396639..396728,396746..397043,397073..397160,397191..397359,397389..397539,397573..>397975))	Theileria annulata	3864426
TA16985	mRNA	TA16985	NC_011129.2	398805	406628	D	TA16985	join(<398805..398925,398958..399290,399320..399454,399486..399641,399672..400019,400051..400371,400402..401594,401628..402429,402459..402567,402603..405467,405506..>406628)	Theileria annulata	3863389
TA16980	mRNA	TA16980	NC_011129.2	406644	415329	R	TA16980	complement(join(<406644..407868,407907..413262,413294..413686,413716..414126,414158..414400,414437..414679,414710..414982,415015..415165,415197..415238,415270..>415329))	Theileria annulata	3863388
TA16975	mRNA	TA16975	NC_011129.2	415554	416349	R	TA16975	complement(join(<415554..415692,415727..416152,416183..416249,416334..>416349))	Theileria annulata	3863387
TA16970	mRNA	TA16970	NC_011129.2	416797	417156	R	TA16970	complement(join(<416797..416912,416951..417047,417079..>417156))	Theileria annulata	3863386
TA16965	mRNA	TA16965	NC_011129.2	417432	422543	R	TA16965	complement(<417432..>422543)	Theileria annulata	3863385
TA16960	mRNA	TA16960	NC_011129.2	422554	424027	D	TA16960	join(<422554..422860,422900..423186,423221..423307,423392..423611,423661..423797,423887..>424027)	Theileria annulata	3863384
TA16955	mRNA	TA16955	NC_011129.2	424207	424518	D	TA16955	<424207..>424518	Theileria annulata	3863383
TA16950	mRNA	TA16950	NC_011129.2	424537	426314	R	TA16950	complement(join(<424537..424714,424768..>426314))	Theileria annulata	3863382
TA16945	mRNA	TA16945	NC_011129.2	426463	427665	D	TA16945	join(<426463..426525,426556..>427665)	Theileria annulata	3863381
TA16940	mRNA	TA16940	NC_011129.2	427727	429980	R	TA16940	complement(join(<427727..427987,428050..428383,428615..428918,428993..429478,429511..429695,429754..>429980))	Theileria annulata	3863380
TA16935	mRNA	TA16935	NC_011129.2	430129	430846	R	TA16935	complement(join(<430129..430416,430506..430658,430700..>430846))	Theileria annulata	3863379
TA16930	mRNA	TA16930	NC_011129.2	430953	432266	R	TA16930	complement(<430953..>432266)	Theileria annulata	3863378
TA16925	mRNA	TA16925	NC_011129.2	432366	437879	R	TA16925	complement(join(<432366..432909,433011..433135,433168..433520,433579..434029,434085..>437879))	Theileria annulata	3863377
TA16920	mRNA	TA16920	NC_011129.2	438037	439555	R	TA16920	complement(join(<438037..438323,438386..438496,438562..439109,439196..439407,439493..>439555))	Theileria annulata	3863376
TA16915	mRNA	TA16915	NC_011129.2	440193	441916	D	TA16915	join(<440193..440387,440578..441536,441601..>441916)	Theileria annulata	3863375
TA16910	mRNA	TA16910	NC_011129.2	441971	443258	R	TA16910	complement(join(<441971..443093,443149..>443258))	Theileria annulata	3863374
TA16905	mRNA	TA16905	NC_011129.2	443557	444793	D	TA16905	join(<443557..444511,444573..>444793)	Theileria annulata	3863373
TA16900	mRNA	TA16900	NC_011129.2	444826	447021	R	TA16900	complement(<444826..>447021)	Theileria annulata	3863372
TA16895	mRNA	TA16895	NC_011129.2	447130	448863	R	TA16895	complement(<447130..>448863)	Theileria annulata	3863371
TA16890	mRNA	TA16890	NC_011129.2	449015	451137	R	TA16890	complement(join(<449015..449283,449314..449490,449535..449784,449824..450581,450648..450900,450976..>451137))	Theileria annulata	3863370
TA16885	mRNA	TA16885	NC_011129.2	451540	452485	R	TA16885	complement(join(<451540..451623,451691..451852,451911..452042,452112..452202,452277..>452485))	Theileria annulata	3864208
TA16880	mRNA	TA16880	NC_011129.2	452747	454186	D	TA16880	join(<452747..453556,453629..453784,453848..>454186)	Theileria annulata	3864207
TA16875	mRNA	TA16875	NC_011129.2	454442	455776	D	TA16875	<454442..>455776	Theileria annulata	3864206
TA16870	mRNA	TA16870	NC_011129.2	455911	458193	D	TA16870	<455911..>458193	Theileria annulata	3864205
TA16865	mRNA	TA16865	NC_011129.2	458241	462212	R	TA16865	complement(join(<458241..458321,458360..461607,461659..461793,461894..>462212))	Theileria annulata	3864204
TA16860	mRNA	TA16860	NC_011129.2	462572	463919	D	TA16860	join(<462572..462704,462829..462954,462995..463279,463342..463515,463648..>463919)	Theileria annulata	3864203
TA16855	mRNA	TA16855	NC_011129.2	464093	466483	D	TA16855	join(<464093..464147,464257..464795,464888..>466483)	Theileria annulata	3864202
TA16850	mRNA	TA16850	NC_011129.2	466633	468985	R	TA16850	complement(join(<466633..468719,468814..>468985))	Theileria annulata	3864201
TA16845	mRNA	TA16845	NC_011129.2	469521	471639	D	TA16845	join(<469521..469953,470066..470117,470170..470270,470373..470463,470524..470851,470911..471046,471110..>471639)	Theileria annulata	3864200
TA16840	mRNA	TA16840	NC_011129.2	473065	474174	R	TA16840	complement(join(<473065..473487,473639..473739,473772..473843,473949..>474174))	Theileria annulata	3864199
TA16835	mRNA	TA16835	NC_011129.2	474348	475301	R	TA16835	complement(join(<474348..474541,474613..474747,474820..474949,475122..>475301))	Theileria annulata	3864198
TA16830	mRNA	TA16830	NC_011129.2	475591	476972	D	TA16830	join(<475591..476590,476656..>476972)	Theileria annulata	3864197
TA16825	mRNA	TA16825	NC_011129.2	477402	478894	D	TA16825	join(<477402..477671,477758..>478894)	Theileria annulata	3864196
TA16820	mRNA	TA16820	NC_011129.2	479050	480120	R	TA16820	complement(<479050..>480120)	Theileria annulata	3864195
TA16815	mRNA	TA16815	NC_011129.2	480869	483026	R	TA16815	complement(join(<480869..481714,481805..481924,481975..482152,482219..482414,482454..482580,482706..>483026))	Theileria annulata	3864194
TA16810	mRNA	TA16810	NC_011129.2	483189	484817	R	TA16810	complement(join(<483189..483561,483692..484545,484719..>484817))	Theileria annulata	3864193
TA16805	mRNA	TA16805	NC_011129.2	484916	486829	D	TA16805	<484916..>486829	Theileria annulata	3864192
TA16800	mRNA	TA16800	NC_011129.2	487076	488194	D	TA16800	<487076..>488194	Theileria annulata	3864191
TA16795	mRNA	TA16795	NC_011129.2	488616	490724	R	TA16795	complement(<488616..>490724)	Theileria annulata	3864190
TA16790	mRNA	TA16790	NC_011129.2	490820	493423	R	TA16790	complement(<490820..>493423)	Theileria annulata	3863694
TA16785	mRNA	TA16785	NC_011129.2	493630	496072	R	TA16785	complement(join(<493630..493703,493733..493825,493852..494229,494261..494593,494629..494956,494999..495121,495168..495226,495257..495636,495699..>496072))	Theileria annulata	3863693
TA16780	mRNA	TA16780	NC_011129.2	496302	499569	D	TA16780	join(<496302..498231,498291..498742,498822..499127,499183..>499569)	Theileria annulata	3863692
TA16775	mRNA	TA16775	NC_011129.2	499698	501015	D	TA16775	join(<499698..499862,499892..500042,500073..500166,500233..500320,500357..500827,500905..>501015)	Theileria annulata	3863691
TA16770	mRNA	TA16770	NC_011129.2	501040	503046	D	TA16770	join(<501040..502171,502213..502472,502528..>503046)	Theileria annulata	3863690
TA16765	mRNA	TA16765	NC_011129.2	503205	504563	R	TA16765	complement(<503205..>504563)	Theileria annulata	3863689
TA16760	mRNA	TA16760	NC_011129.2	504832	506976	R	TA16760	complement(<504832..>506976)	Theileria annulata	3863688
TA16755	mRNA	TA16755	NC_011129.2	507421	509309	D	TA16755	join(<507421..507684,507749..508868,508904..509024,509075..>509309)	Theileria annulata	3863687
TA16750	mRNA	TA16750	NC_011129.2	509875	510890	R	TA16750	complement(join(<509875..510213,510245..510312,510364..510461,510490..510562,510593..510635,510666..510770,510801..>510890))	Theileria annulata	3863686
TA16745	mRNA	TA16745	NC_011129.2	511063	511801	D	TA16745	join(<511063..511136,511175..511692,511743..>511801)	Theileria annulata	3863685
TA16740	mRNA	TA16740	NC_011129.2	512534	513265	D	TA16740	<512534..>513265	Theileria annulata	3863684
TA16735	mRNA	TA16735	NC_011129.2	513907	517137	D	TA16735	<513907..>517137	Theileria annulata	3863683
TA16730	mRNA	TA16730	NC_011129.2	517305	518348	D	TA16730	join(<517305..517667,517734..>518348)	Theileria annulata	3863682
TA16725	mRNA	TA16725	NC_011129.2	518495	518775	R	TA16725	complement(join(<518495..518637,518688..>518775))	Theileria annulata	3863681
TA16720	mRNA	TA16720	NC_011129.2	518832	519845	R	TA16720	complement(join(<518832..519062,519105..519230,519283..519472,519619..>519845))	Theileria annulata	3863680
TA16715	mRNA	TA16715	NC_011129.2	520396	521480	D	TA16715	join(<520396..520473,520620..520706,520750..520947,521124..>521480)	Theileria annulata	3863679
TA16710	mRNA	TA16710	NC_011129.2	521572	523574	R	TA16710	complement(join(<521572..522666,522732..>523574))	Theileria annulata	3863678
TA16685	mRNA	TA16685	NC_011129.2	524200	527136	R	TA16685	complement(<524200..>527136)	Theileria annulata	3864034
TA16630	mRNA	TA16630	NC_011129.2	527838	529236	R	TA16630	complement(join(<527838..527949,528033..528045,528082..528271,528321..528377,528407..528532,528613..528721,528755..528985,529014..529145,529181..>529236))	Theileria annulata	3864023
TA16575	mRNA	TA16575	NC_011129.2	529833	531232	R	TA16575	complement(join(<529833..530180,530212..530587,530625..>531232))	Theileria annulata	3864265
TA16570	mRNA	TA16570	NC_011129.2	531525	533515	D	TA16570	join(<531525..531642,531768..532296,532379..532473,532569..533002,533057..533165,533198..533316,533390..>533515)	Theileria annulata	3864264
TA16465	mRNA	TA16465	NC_011129.2	533577	536501	R	TA16465	complement(<533577..>536501)	Theileria annulata	3864067
TA16410	mRNA	TA16410	NC_011129.2	536910	537666	R	TA16410	complement(join(<536910..537156,537280..537355,537450..537545,537606..>537666))	Theileria annulata	3864056
TA16405	mRNA	TA16405	NC_011129.2	538200	538601	D	TA16405	join(<538200..538380,538438..>538601)	Theileria annulata	3864055
TA16350	mRNA	TA16350	NC_011129.2	539575	541095	D	TA16350	join(<539575..539691,539724..539803,539858..539910,539972..540053,540085..540343,540393..540458,540521..540577,540620..540679,540760..540822,540884..540980,541019..>541095)	Theileria annulata	3863400
TA16245	mRNA	TA16245	NC_011129.2	542043	544095	R	TA16245	complement(join(<542043..542108,542140..542239,542270..542398,542431..542549,542582..542749,542802..542986,543019..543369,543433..543578,543620..543727,543782..>544095))	Theileria annulata	3863596
TA16240	mRNA	TA16240	NC_011129.2	544250	547918	D	TA16240	<544250..>547918	Theileria annulata	3863595
TA16135	mRNA	TA16135	NC_011129.2	549120	549368	R	TA16135	complement(<549120..>549368)	Theileria annulata	3864137
TA16130	mRNA	TA16130	NC_011129.2	550206	552562	D	TA16130	join(<550206..550624,550660..550844,550907..552374,552406..>552562)	Theileria annulata	3864136
TA16125	mRNA	TA16125	NC_011129.2	553131	554123	D	TA16125	<553131..>554123	Theileria annulata	3864135
TA16120	mRNA	TA16120	NC_011129.2	554255	555115	R	TA16120	complement(join(<554255..554392,554424..554482,554512..554763,554824..554938,554975..>555115))	Theileria annulata	3864134
TA16115	mRNA	TA16115	NC_011129.2	555228	555830	D	TA16115	join(<555228..555332,555420..555666,555727..>555830)	Theileria annulata	3864133
TA16110	mRNA	TA16110	NC_011129.2	555913	556416	R	TA16110	complement(join(<555913..556072,556121..556305,556360..>556416))	Theileria annulata	3864132
TA16105	mRNA	TA16105	NC_011129.2	556941	557807	D	TA16105	<556941..>557807	Theileria annulata	3864131
TA16100	mRNA	TA16100	NC_011129.2	557893	559129	D	TA16100	join(<557893..557980,558057..558159,558226..558696,558811..558909,558963..559037,559066..>559129)	Theileria annulata	3864346
TA16095	mRNA	TA16095	NC_011129.2	559382	560890	R	TA16095	complement(<559382..>560890)	Theileria annulata	3864345
TA16090	mRNA	TA16090	NC_011129.2	561370	566721	R	TA16090	complement(<561370..>566721)	Theileria annulata	3864344
TA06655	mRNA	TA06655	NC_011129.2	567702	569105	R	TA06655	complement(join(<567702..568904,569055..>569105))	Theileria annulata	3863477
TA06650	mRNA	TA06650	NC_011129.2	569316	570031	R	TA06650	complement(join(<569316..569684,569803..569833,570003..>570031))	Theileria annulata	3863476
TA06645	mRNA	TA06645	NC_011129.2	570184	570772	R	TA06645	complement(join(<570184..570561,570617..>570772))	Theileria annulata	3863475
TA06640	mRNA	TA06640	NC_011129.2	571338	572408	R	TA06640	complement(<571338..>572408)	Theileria annulata	3863474
TA06630	mRNA	TA06630	NC_011129.2	572442	573147	R	TA06630	complement(join(<572442..572627,572681..573007,573046..>573147))	Theileria annulata	3863472
TA06625	mRNA	TA06625	NC_011129.2	573588	576458	D	TA06625	join(<573588..574911,574969..>576458)	Theileria annulata	3863471
TA06620	mRNA	TA06620	NC_011129.2	576821	578239	D	TA06620	<576821..>578239	Theileria annulata	3863470
TA06615	mRNA	TA06615	NC_011129.2	578500	581557	D	TA06615	join(<578500..578787,578819..>581557)	Theileria annulata	3863469
TA06610	mRNA	TA06610	NC_011129.2	581604	583998	D	TA06610	join(<581604..582847,582879..582960,583015..583105,583135..583270,583343..583492,583549..583721,583755..583855,583885..>583998)	Theileria annulata	3863429
TA06605	mRNA	TA06605	NC_011129.2	584422	587268	D	TA06605	join(<584422..584575,584623..584765,584798..584987,585016..585107,585177..585633,585681..585742,585775..585870,585924..586105,586228..586385,586441..586510,586569..586714,586787..>587268)	Theileria annulata	3863428
TA06600	mRNA	TA06600	NC_011129.2	587476	588808	R	TA06600	complement(join(<587476..587655,587687..587869,587899..588234,588266..588415,588468..588579,588648..>588808))	Theileria annulata	3863427
TA06595	mRNA	TA06595	NC_011129.2	589190	590229	R	TA06595	complement(join(<589190..589339,589371..589399,589451..589481,589512..589572,589607..589695,589730..589823,589881..590075,590108..>590229))	Theileria annulata	3863426
TA06590	mRNA	TA06590	NC_011129.2	590280	592197	R	TA06590	complement(join(<590280..590470,590506..590577,590609..590642,590676..590859,590914..591086,591159..591238,591268..591538,591613..592052,592134..>592197))	Theileria annulata	3863425
TA06585	mRNA	TA06585	NC_011129.2	592386	595640	R	TA06585	complement(join(<592386..595451,595482..>595640))	Theileria annulata	3863424
TA06575	mRNA	TA06575	NC_011129.2	596091	596590	D	TA06575	join(<596091..596460,596490..>596590)	Theileria annulata	3863422
TA06570	mRNA	TA06570	NC_011129.2	596766	598186	R	TA06570	complement(join(<596766..597028,597060..597171,597269..597444,597521..597781,597811..>598186))	Theileria annulata	3863421
TA06565	mRNA	TA06565	NC_011129.2	598565	598942	R	TA06565	complement(<598565..>598942)	Theileria annulata	3863420
TA06560	mRNA	TA06560	NC_011129.2	599409	600228	D	TA06560	join(<599409..599647,599754..>600228)	Theileria annulata	3863419
TA06555	mRNA	TA06555	NC_011129.2	600383	601250	R	TA06555	complement(join(<600383..600838,600942..>601250))	Theileria annulata	3863418
TA06550	mRNA	TA06550	NC_011129.2	601435	602677	R	TA06550	complement(join(<601435..601579,601647..601714,601745..601818,601868..602005,602035..602213,602372..602476,602667..>602677))	Theileria annulata	3863417
TA06545	mRNA	TA06545	NC_011129.2	603131	605125	D	TA06545	<603131..>605125	Theileria annulata	3863416
TA06540	mRNA	TA06540	NC_011129.2	605787	606937	D	TA06540	join(<605787..606411,606471..>606937)	Theileria annulata	3863415
TA06535	mRNA	TA06535	NC_011129.2	607542	607718	D	TA06535	join(<607542..607562,607614..>607718)	Theileria annulata	3863414
TA06530	mRNA	TA06530	NC_011129.2	607974	608775	D	TA06530	join(<607974..608115,608157..608302,608333..608464,608506..608625,608656..>608775)	Theileria annulata	3863413
TA06525	mRNA	TA06525	NC_011129.2	609175	610691	D	TA06525	join(<609175..609490,609559..609659,609689..609835,609865..610020,610047..610146,610222..610509,610570..>610691)	Theileria annulata	3863412
TA06520	mRNA	TA06520	NC_011129.2	610779	612774	R	TA06520	complement(join(<610779..610878,610909..611003,611045..611124,611229..612328,612415..612455,612499..612642,612709..>612774))	Theileria annulata	3863411
TA06515	mRNA	TA06515	NC_011129.2	613074	613624	R	TA06515	complement(join(<613074..613348,613414..>613624))	Theileria annulata	3863410
TA06510	mRNA	TA06510	NC_011129.2	613796	614731	R	TA06510	complement(<613796..>614731)	Theileria annulata	3864541
TA06505	mRNA	TA06505	NC_011129.2	614938	616764	R	TA06505	complement(join(<614938..616281,616333..>616764))	Theileria annulata	3864540
TA06500	mRNA	TA06500	NC_011129.2	617939	620651	D	TA06500	join(<617939..618752,618794..619159,619195..619307,619364..619703,619754..619822,619885..>620651)	Theileria annulata	3864539
TA06495	mRNA	TA06495	NC_011129.2	620731	621666	R	TA06495	complement(<620731..>621666)	Theileria annulata	3864538
TA06490	mRNA	TA06490	NC_011129.2	621724	625179	R	TA06490	complement(join(<621724..621810,621877..622031,622088..622220,622280..622472,622558..622709,622740..623211,623242..623729,623783..624255,624294..>625179))	Theileria annulata	3864537
TA06485	mRNA	TA06485	NC_011129.2	625462	627331	R	TA06485	complement(join(<625462..625933,625962..626342,626351..626432,626478..626560,626591..626766,626796..626883,626957..627021,627052..627147,627179..>627331))	Theileria annulata	3864536
TA06480	mRNA	TA06480	NC_011129.2	627446	628637	R	TA06480	complement(join(<627446..627593,627627..627724,627756..628379,628410..>628637))	Theileria annulata	3864535
TA06470	mRNA	TA06470	NC_011129.2	628985	631951	D	TA06470	<628985..>631951	Theileria annulata	3864533
TA06465	mRNA	TA06465	NC_011129.2	632202	635900	D	TA06465	<632202..>635900	Theileria annulata	3864532
TA06460	mRNA	TA06460	NC_011129.2	636050	638473	R	TA06460	complement(join(<636050..636407,636438..637219,637259..637393,637450..637552,637583..638081,638137..>638473))	Theileria annulata	3864531
TA06455	mRNA	TA06455	NC_011129.2	638630	640627	R	TA06455	complement(<638630..>640627)	Theileria annulata	3864530
TA06450	mRNA	TA06450	NC_011129.2	641220	641903	D	TA06450	<641220..>641903	Theileria annulata	3864529
TA06445	mRNA	TA06445	NC_011129.2	641932	642351	R	TA06445	complement(join(<641932..642144,642199..>642351))	Theileria annulata	3864528
TA06440	mRNA	TA06440	NC_011129.2	642610	643473	D	TA06440	join(<642610..642675,642733..642803,642867..642978,643052..643156,643190..643279,643351..>643473)	Theileria annulata	3864527
TA06435	mRNA	TA06435	NC_011129.2	644591	644985	D	TA06435	join(<644591..644789,644822..>644985)	Theileria annulata	3864526
TA06430	mRNA	TA06430	NC_011129.2	645111	647330	R	TA06430	complement(join(<645111..645422,645452..645988,646087..646272,646332..646470,646519..646669,646749..646871,646906..647058,647147..>647330))	Theileria annulata	3864525
TA06425	mRNA	TA06425	NC_011129.2	648068	648485	D	TA06425	join(<648068..648229,648288..>648485)	Theileria annulata	3864524
TA06415	mRNA	TA06415	NC_011129.2	648630	650363	R	TA06415	complement(join(<648630..648891,648930..649040,649072..649118,649159..649312,649369..649539,649568..649602,649636..649825,649855..649940,649971..650113,650154..650193,650235..>650363))	Theileria annulata	3864228
TA06410	mRNA	TA06410	NC_011129.2	650371	655518	R	TA06410	complement(join(<650371..650508,650587..650788,650821..650946,651155..651232,651264..651449,651538..651608,651651..651770,651820..652502,652546..652617,652647..652741,652809..653007,653082..653262,653348..653407,653439..654946,654977..655014,655046..>655518))	Theileria annulata	3864227
TA06405	mRNA	TA06405	NC_011129.2	655724	657283	R	TA06405	complement(join(<655724..655796,655828..656816,656847..657068,657098..>657283))	Theileria annulata	3864226
TA06400	mRNA	TA06400	NC_011129.2	657485	660831	D	TA06400	join(<657485..659407,659439..659987,660034..>660831)	Theileria annulata	3864225
TA06395	mRNA	TA06395	NC_011129.2	661311	665287	D	TA06395	join(<661311..661716,661803..>665287)	Theileria annulata	3864224
TA06390	mRNA	TA06390	NC_011129.2	665367	666578	R	TA06390	complement(<665367..>666578)	Theileria annulata	3864223
TA06385	mRNA	TA06385	NC_011129.2	666874	667278	R	TA06385	complement(<666874..>667278)	Theileria annulata	3864222
TA06380	mRNA	TA06380	NC_011129.2	668513	669383	R	TA06380	complement(join(<668513..668956,669033..>669383))	Theileria annulata	3864221
TA06375	mRNA	TA06375	NC_011129.2	669780	670232	R	TA06375	complement(<669780..>670232)	Theileria annulata	3864220
TA06370	mRNA	TA06370	NC_011129.2	670430	673390	R	TA06370	complement(<670430..>673390)	Theileria annulata	3864219
TA06360	mRNA	TA06360	NC_011129.2	673518	675194	R	TA06360	complement(<673518..>675194)	Theileria annulata	3864217
TA06355	mRNA	TA06355	NC_011129.2	675572	675949	R	TA06355	complement(<675572..>675949)	Theileria annulata	3864216
TA06350	mRNA	TA06350	NC_011129.2	676046	678438	R	TA06350	complement(join(<676046..676486,676579..676791,676832..677506,677580..677707,677745..677918,677973..678263,678333..>678438))	Theileria annulata	3864215
TA06345	mRNA	TA06345	NC_011129.2	678652	679560	R	TA06345	complement(<678652..>679560)	Theileria annulata	3864214
TA06340	mRNA	TA06340	NC_011129.2	679820	680429	R	TA06340	complement(join(<679820..680198,680228..680295,680328..>680429))	Theileria annulata	3864213
TA06335	mRNA	TA06335	NC_011129.2	680551	681513	D	TA06335	join(<680551..680647,680726..681169,681239..>681513)	Theileria annulata	3864212
TA06330	mRNA	TA06330	NC_011129.2	681731	684061	D	TA06330	<681731..>684061	Theileria annulata	3864211
TA06325	mRNA	TA06325	NC_011129.2	684172	685058	D	TA06325	join(<684172..684454,684544..>685058)	Theileria annulata	3864210
TA06320	mRNA	TA06320	NC_011129.2	685501	687540	D	TA06320	join(<685501..686124,686249..687013,687125..687220,687247..>687540)	Theileria annulata	3864209
TA06315	mRNA	TA06315	NC_011129.2	687879	690413	R	TA06315	complement(<687879..>690413)	Theileria annulata	3863468
TA06305	mRNA	TA06305	NC_011129.2	691084	694130	D	TA06305	join(<691084..691466,691502..691625,691656..692843,692873..693043,693099..693776,693807..693971,694002..>694130)	Theileria annulata	3863466
TA06300	mRNA	TA06300	NC_011129.2	694247	695461	D	TA06300	join(<694247..694452,694514..694745,694787..>695461)	Theileria annulata	3863465
TA06295	mRNA	TA06295	NC_011129.2	695600	697719	D	TA06295	join(<695600..697213,697241..697324,697354..>697719)	Theileria annulata	3863464
TA06290	mRNA	TA06290	NC_011129.2	697809	701701	R	TA06290	complement(join(<697809..698057,698088..698254,698287..698433,698497..698559,698594..698656,698687..698944,698974..699081,699117..699240,699272..699352,699391..699552,699582..699638,699669..699939,699982..700129,700159..700689,700726..701140,701172..701246,701276..701511,701590..>701701))	Theileria annulata	3863463
TA06285	mRNA	TA06285	NC_011129.2	702099	703014	D	TA06285	join(<702099..702257,702297..702518,702557..702708,702741..>703014)	Theileria annulata	3863462
TA06280	mRNA	TA06280	NC_011129.2	703049	705658	R	TA06280	complement(<703049..>705658)	Theileria annulata	3863461
TA06275	mRNA	TA06275	NC_011129.2	705896	706254	R	TA06275	complement(join(<705896..705998,706030..706115,706171..>706254))	Theileria annulata	3863460
TA06270	mRNA	TA06270	NC_011129.2	706352	708167	D	TA06270	join(<706352..706453,706549..706695,706727..706834,706867..706976,707008..707185,707240..707309,707340..707656,707687..707849,707881..>708167)	Theileria annulata	3863459
TA06265	mRNA	TA06265	NC_011129.2	708388	710247	D	TA06265	<708388..>710247	Theileria annulata	3863458
TA06260	mRNA	TA06260	NC_011129.2	710444	713464	D	TA06260	<710444..>713464	Theileria annulata	3863457
TA06245	mRNA	TA06245	NC_011129.2	713912	714649	R	TA06245	complement(<713912..>714649)	Theileria annulata	3863454
TA06240	mRNA	TA06240	NC_011129.2	716747	717049	D	TA06240	join(<716747..716775,716823..716921,716953..>717049)	Theileria annulata	3863453
TA06235	mRNA	TA06235	NC_011129.2	717320	719113	D	TA06235	join(<717320..717451,717560..717668,717698..717906,717969..718272,718306..718415,718450..718565,718625..718733,718768..718980,719021..>719113)	Theileria annulata	3863452
TA06230	mRNA	TA06230	NC_011129.2	719507	719954	R	TA06230	complement(join(<719507..719692,719724..>719954))	Theileria annulata	3863451
TA06225	mRNA	TA06225	NC_011129.2	720296	720859	R	TA06225	complement(<720296..>720859)	Theileria annulata	3863450
TA06220	mRNA	TA06220	NC_011129.2	721785	722321	R	TA06220	complement(<721785..>722321)	Theileria annulata	3863714
TA06215	mRNA	TA06215	NC_011129.2	722896	723705	R	TA06215	complement(join(<722896..723573,723667..>723705))	Theileria annulata	3863713
TA06210	mRNA	TA06210	NC_011129.2	724024	724678	D	TA06210	join(<724024..724466,724537..>724678)	Theileria annulata	3863712
TA06205	mRNA	TA06205	NC_011129.2	725444	725923	R	TA06205	complement(<725444..>725923)	Theileria annulata	3863711
TA06200	mRNA	TA06200	NC_011129.2	726320	729412	R	TA06200	complement(join(<726320..728187,728218..728342,728499..>729412))	Theileria annulata	3863710
TA06195	mRNA	TA06195	NC_011129.2	730218	730794	R	TA06195	complement(join(<730218..730374,730433..>730794))	Theileria annulata	3863709
TA06185	mRNA	TA06185	NC_011129.2	730903	731748	R	TA06185	complement(join(<730903..730992,731024..731125,731169..731624,731653..>731748))	Theileria annulata	3863708
TA06180	mRNA	TA06180	NC_011129.2	732154	733701	D	TA06180	<732154..>733701	Theileria annulata	3863707
TA06175	mRNA	TA06175	NC_011129.2	733820	734731	R	TA06175	complement(<733820..>734731)	Theileria annulata	3863706
TA06170	mRNA	TA06170	NC_011129.2	735356	736195	D	TA06170	join(<735356..735423,735474..735593,735630..735691,735746..735819,735859..735972,736004..>736195)	Theileria annulata	3863705
TA06165	mRNA	TA06165	NC_011129.2	736613	737508	D	TA06165	join(<736613..736661,736738..736960,736989..737116,737179..737252,737283..737351,737419..>737508)	Theileria annulata	3863704
TA06160	mRNA	TA06160	NC_011129.2	737768	740220	D	TA06160	join(<737768..737887,738089..738163,738417..738452,738497..738644,738688..738791,738830..738961,738991..739146,739177..739988,740019..>740220)	Theileria annulata	3863703
TA06155	mRNA	TA06155	NC_011129.2	740511	741614	D	TA06155	join(<740511..740612,740672..740947,740979..741086,741121..741233,741309..741400,741493..>741614)	Theileria annulata	3863702
TA06150	mRNA	TA06150	NC_011129.2	741764	742856	D	TA06150	join(<741764..742059,742116..742218,742255..742413,742447..742525,742561..742700,742740..>742856)	Theileria annulata	3863701
TA06135	mRNA	TA06135	NC_011129.2	742943	745537	R	TA06135	complement(<742943..>745537)	Theileria annulata	3863698
TA06130	mRNA	TA06130	NC_011129.2	746467	747641	R	TA06130	complement(join(<746467..746727,746757..746900,746936..746998,747028..747132,747163..747348,747414..>747641))	Theileria annulata	3863697
TA06125	mRNA	TA06125	NC_011129.2	747872	749251	R	TA06125	complement(join(<747872..748080,748111..748229,748263..748358,748397..748517,748549..748582,748627..748688,748719..749023,749055..>749251))	Theileria annulata	3863696
TA06120	mRNA	TA06120	NC_011129.2	749379	750786	R	TA06120	complement(join(<749379..749512,749580..750167,750198..750323,750362..750395,750452..750504,750537..750702,750739..>750786))	Theileria annulata	3863695
TA06115	mRNA	TA06115	NC_011129.2	751162	751988	D	TA06115	join(<751162..751716,751746..>751988)	Theileria annulata	3863810
TA06110	mRNA	TA06110	NC_011129.2	752116	752631	R	TA06110	complement(<752116..>752631)	Theileria annulata	3863809
TA06105	mRNA	TA06105	NC_011129.2	753012	758462	R	TA06105	complement(<753012..>758462)	Theileria annulata	3863808
TA06100	mRNA	TA06100	NC_011129.2	760064	761279	D	TA06100	join(<760064..760168,760228..760469,760601..>761279)	Theileria annulata	3863807
TA06095	mRNA	TA06095	NC_011129.2	761465	764143	D	TA06095	<761465..>764143	Theileria annulata	3863806
TA06090	mRNA	TA06090	NC_011129.2	764308	765825	D	TA06090	<764308..>765825	Theileria annulata	3863805
TA06080	mRNA	TA06080	NC_011129.2	765919	767347	R	TA06080	complement(join(<765919..766013,766042..766111,766144..766231,766281..766315,766372..766398,766432..766612,766662..766778,766811..766890,766943..767018,767073..>767347))	Theileria annulata	3863803
TA06075	mRNA	TA06075	NC_011129.2	767625	768936	D	TA06075	join(<767625..767788,767882..768033,768094..768219,768256..768557,768637..>768936)	Theileria annulata	3863802
TA06070	mRNA	TA06070	NC_011129.2	769457	771247	D	TA06070	<769457..>771247	Theileria annulata	3863801
TA06065	mRNA	TA06065	NC_011129.2	771274	772836	R	TA06065	complement(<771274..>772836)	Theileria annulata	3863800
TA06060	mRNA	TA06060	NC_011129.2	773270	774376	R	TA06060	complement(join(<773270..773958,774082..>774376))	Theileria annulata	3863799
TA06055	mRNA	TA06055	NC_011129.2	774862	775592	R	TA06055	complement(join(<774862..774962,775058..775327,775370..>775592))	Theileria annulata	3863798
TA06050	mRNA	TA06050	NC_011129.2	775866	776748	R	TA06050	complement(join(<775866..775915,776034..776085,776116..776190,776261..776403,776502..>776748))	Theileria annulata	3863797
TA06045	mRNA	TA06045	NC_011129.2	776896	777689	D	TA06045	join(<776896..777355,777397..>777689)	Theileria annulata	3863796
TA06040	mRNA	TA06040	NC_011129.2	778263	779099	D	TA06040	join(<778263..778340,778374..778429,778496..778621,778654..778696,778760..778870,778920..>779099)	Theileria annulata	3863795
TA06035	mRNA	TA06035	NC_011129.2	779425	780441	D	TA06035	<779425..>780441	Theileria annulata	3863794
TA06030	mRNA	TA06030	NC_011129.2	780767	781784	D	TA06030	join(<780767..780918,780949..780962,781059..781436,781513..>781784)	Theileria annulata	3863793
TA06025	mRNA	TA06025	NC_011129.2	782217	784463	D	TA06025	<782217..>784463	Theileria annulata	3863792
TA06020	mRNA	TA06020	NC_011129.2	784939	785872	R	TA06020	complement(join(<784939..785062,785095..785410,785441..785601,785658..>785872))	Theileria annulata	3864307
TA06015	mRNA	TA06015	NC_011129.2	786250	787819	D	TA06015	join(<786250..786397,786454..786674,786746..786832,786895..787010,787250..787337,787385..787471,787562..>787819)	Theileria annulata	3864306
TA06010	mRNA	TA06010	NC_011129.2	788101	790122	D	TA06010	join(<788101..788178,788271..788423,788493..788646,788701..789100,789153..789253,789316..789443,789512..789656,789731..789836,789900..>790122)	Theileria annulata	3864305
TA06005	mRNA	TA06005	NC_011129.2	790347	792200	D	TA06005	<790347..>792200	Theileria annulata	3864304
TA06000	mRNA	TA06000	NC_011129.2	792229	793248	R	TA06000	complement(<792229..>793248)	Theileria annulata	3864303
TA05995	mRNA	TA05995	NC_011129.2	794019	795262	D	TA05995	join(<794019..794199,794268..794602,794666..794736,794788..794867,794898..794972,795026..795141,795182..>795262)	Theileria annulata	3864302
TA05990	mRNA	TA05990	NC_011129.2	795299	796088	R	TA05990	complement(join(<795299..795916,795978..>796088))	Theileria annulata	3864301
TA05985	mRNA	TA05985	NC_011129.2	796174	798279	R	TA05985	complement(<796174..>798279)	Theileria annulata	3864300
TA05975	mRNA	TA05975	NC_011129.2	798410	802334	D	TA05975	join(<798410..799120,799150..799236,799271..799408,799440..799534,799593..799683,799757..799957,799987..800231,800269..800407,800537..800752,800783..800842,801045..>802334)	Theileria annulata	3864298
TA05970	mRNA	TA05970	NC_011129.2	802428	805352	R	TA05970	complement(<802428..>805352)	Theileria annulata	3864297
TA05965	mRNA	TA05965	NC_011129.2	805475	807289	R	TA05965	complement(<805475..>807289)	Theileria annulata	3864296
TA05960	mRNA	TA05960	NC_011129.2	807545	809257	R	TA05960	complement(<807545..>809257)	Theileria annulata	3864295
TA05955	mRNA	TA05955	NC_011129.2	809491	810389	R	TA05955	complement(join(<809491..809659,809732..809838,809869..809934,809966..810185,810226..810288,810346..>810389))	Theileria annulata	3864294
TA05950	mRNA	TA05950	NC_011129.2	810519	812220	R	TA05950	complement(join(<810519..810960,811029..811224,811319..811772,811849..811925,812008..812121,812187..>812220))	Theileria annulata	3864293
TA05945	mRNA	TA05945	NC_011129.2	812451	813341	R	TA05945	complement(join(<812451..812690,812720..812958,813071..>813341))	Theileria annulata	3864292
TA05940	mRNA	TA05940	NC_011129.2	813495	814145	R	TA05940	complement(join(<813495..813605,813640..813685,813731..814055,814103..>814145))	Theileria annulata	3864291
TA05935	mRNA	TA05935	NC_011129.2	814746	817297	D	TA05935	join(<814746..814799,814828..814955,815005..815050,815080..815161,815225..815319,815370..815525,815559..815704,815750..815864,815917..816100,816144..816226,816256..816382,816409..816563,816619..816767,816900..817055,817114..>817297)	Theileria annulata	3864290
TA05930	mRNA	TA05930	NC_011129.2	817494	821541	D	TA05930	join(<817494..817593,817624..817739,818022..818318,818393..818526,818556..818709,818757..818864,818897..818943,818974..819790,819832..819988,820020..820076,820142..820899,820978..821078,821109..821193,821226..821309,821339..821388,821442..>821541)	Theileria annulata	3864289
TA05920	mRNA	TA05920	NC_011129.2	821598	822153	D	TA05920	join(<821598..821733,821771..>822153)	Theileria annulata	3864287
TA05915	mRNA	TA05915	NC_011129.2	822241	824516	D	TA05915	join(<822241..824002,824080..824279,824331..>824516)	Theileria annulata	3864286
TA05910	mRNA	TA05910	NC_011129.2	824654	827860	R	TA05910	complement(<824654..>827860)	Theileria annulata	3864285
TA05905	mRNA	TA05905	NC_011129.2	827989	831342	R	TA05905	complement(join(<827989..828400,828466..828607,828675..828768,828840..829395,829480..831161,831193..>831342))	Theileria annulata	3864284
TA05900	mRNA	TA05900	NC_011129.2	831798	841681	D	TA05900	join(<831798..833927,833960..>841681)	Theileria annulata	3864283
TA05895	mRNA	TA05895	NC_011129.2	841791	842061	R	TA05895	complement(join(<841791..841939,841971..>842061))	Theileria annulata	3864282
TA05890	mRNA	TA05890	NC_011129.2	842277	845185	D	TA05890	join(<842277..842351,842384..843398,843711..843760,843807..843981,844048..844129,844159..844243,844275..844349,844378..844443,844472..844924,844953..845011,845041..>845185)	Theileria annulata	3864281
TA05885	mRNA	TA05885	NC_011129.2	845202	846281	R	TA05885	complement(<845202..>846281)	Theileria annulata	3864280
TA05880	mRNA	TA05880	NC_011129.2	846472	847570	R	TA05880	complement(join(<846472..846543,846558..846632,846664..846758,846789..847076,847111..847211,847244..847302,847334..>847570))	Theileria annulata	3864279
TA05875	mRNA	TA05875	NC_011129.2	847676	849376	R	TA05875	complement(join(<847676..847796,847827..847960,847992..848720,848752..849094,849165..>849376))	Theileria annulata	3864278
TA05865	mRNA	TA05865	NC_011129.2	850109	851661	D	TA05865	join(<850109..850162,850195..850268,850427..850598,850629..850734,850764..850915,850947..851135,851165..851218,851248..851358,851389..851481,851514..851576,851608..>851661)	Theileria annulata	3864276
TA05860	mRNA	TA05860	NC_011129.2	851783	852944	R	TA05860	complement(join(<851783..852178,852208..852261,852323..852482,852517..>852944))	Theileria annulata	3864275
TA05855	mRNA	TA05855	NC_011129.2	853239	856899	R	TA05855	complement(join(<853239..853487,853519..853630,853663..854032,854063..854230,854260..854365,854395..854491,854524..854618,854650..855027,855080..855999,856034..856717,856824..>856899))	Theileria annulata	3864274
TA05850	mRNA	TA05850	NC_011129.2	857097	858257	R	TA05850	complement(<857097..>858257)	Theileria annulata	3864273
TA05845	mRNA	TA05845	NC_011129.2	858963	861127	D	TA05845	join(<858963..859412,859443..859884,859915..860027,860056..860306,860336..860660,860694..860794,860824..>861127)	Theileria annulata	3864272
TA05840	mRNA	TA05840	NC_011129.2	861192	862082	R	TA05840	complement(<861192..>862082)	Theileria annulata	3864271
TA05835	mRNA	TA05835	NC_011129.2	862184	865429	R	TA05835	complement(join(<862184..864617,864646..864991,865024..>865429))	Theileria annulata	3864270
TA05830	mRNA	TA05830	NC_011129.2	865881	866495	D	TA05830	join(<865881..866013,866045..866126,866164..866199,866234..866287,866317..866383,866415..>866495)	Theileria annulata	3864269
TA05825	mRNA	TA05825	NC_011129.2	866563	868653	R	TA05825	complement(join(<866563..866695,866727..866768,866798..866917,866951..867099,867133..867345,867375..867437,867483..867593,867623..867682,867711..867782,867812..868356,868389..>868653))	Theileria annulata	3863567
TA05820	mRNA	TA05820	NC_011129.2	868951	870183	R	TA05820	complement(<868951..>870183)	Theileria annulata	3863566
TA05810	mRNA	TA05810	NC_011129.2	870415	871171	R	TA05810	complement(join(<870415..870556,870587..870652,870698..870819,870857..>871171))	Theileria annulata	3863564
TA05805	mRNA	TA05805	NC_011129.2	871951	874187	D	TA05805	join(<871951..871999,872036..872074,872106..872195,872230..872346,872378..872561,872591..872837,872871..873215,873266..873358,873400..873479,873529..873629,873660..873872,873904..>874187)	Theileria annulata	3863563
TA05800	mRNA	TA05800	NC_011129.2	875077	876584	D	TA05800	join(<875077..875971,876049..>876584)	Theileria annulata	3863562
TA05795	mRNA	TA05795	NC_011129.2	876925	878105	D	TA05795	join(<876925..876997,877053..877123,877161..877229,877260..>878105)	Theileria annulata	3863561
TA05790	mRNA	TA05790	NC_011129.2	879701	880802	D	TA05790	join(<879701..879849,879884..880385,880416..880541,880575..>880802)	Theileria annulata	3863560
TA05785	mRNA	TA05785	NC_011129.2	881234	887483	D	TA05785	join(<881234..881533,881564..881699,881729..883707,883751..886637,886692..886779,886809..887155,887221..>887483)	Theileria annulata	3863559
TA05780	mRNA	TA05780	NC_011129.2	887562	889784	R	TA05780	complement(<887562..>889784)	Theileria annulata	3863558
TA05775	mRNA	TA05775	NC_011129.2	889907	891889	R	TA05775	complement(<889907..>891889)	Theileria annulata	3863557
TA05770	mRNA	TA05770	NC_011129.2	892105	894243	R	TA05770	complement(<892105..>894243)	Theileria annulata	3863556
TA05765	mRNA	TA05765	NC_011129.2	894500	897832	R	TA05765	complement(<894500..>897832)	Theileria annulata	3863555
TA05755	mRNA	TA05755	NC_011129.2	898094	901342	R	TA05755	complement(<898094..>901342)	Theileria annulata	3863553
TA05750	mRNA	TA05750	NC_011129.2	901808	902115	D	TA05750	join(<901808..901948,901984..>902115)	Theileria annulata	3863552
TA05745	mRNA	TA05745	NC_011129.2	902123	905190	R	TA05745	complement(join(<902123..902215,902247..902452,902483..902726,902761..902853,902883..903017,903052..903324,903355..903466,903499..903563,903597..903698,903734..903787,903817..903903,903935..904023,904055..904151,904182..904444,904476..904579,904611..904818,904856..904974,905007..905045,905153..>905190))	Theileria annulata	3863551
TA05740	mRNA	TA05740	NC_011129.2	905445	906159	R	TA05740	complement(join(<905445..905587,905625..905753,905787..905954,905989..906068,906110..>906159))	Theileria annulata	3863550
TA05735	mRNA	TA05735	NC_011129.2	906948	908534	R	TA05735	complement(join(<906948..907028,907066..907098,907131..907234,907264..907363,907397..907422,907455..907478,907510..907646,907678..907741,907772..907949,907980..>908534))	Theileria annulata	3863549
TA05730	mRNA	TA05730	NC_011129.2	908892	909944	D	TA05730	join(<908892..909223,909256..909367,909396..909544,909574..909672,909702..909761,909791..>909944)	Theileria annulata	3863548
TA05725	mRNA	TA05725	NC_011129.2	910210	912201	D	TA05725	join(<910210..910824,910854..910934,911026..>912201)	Theileria annulata	3863925
TA05720	mRNA	TA05720	NC_011129.2	912272	912547	R	TA05720	complement(<912272..>912547)	Theileria annulata	3863924
TA05715	mRNA	TA05715	NC_011129.2	912839	913910	R	TA05715	complement(join(<912839..913052,913175..913244,913279..913392,913427..913616,913646..913833,913865..>913910))	Theileria annulata	3863923
TA05710	mRNA	TA05710	NC_011129.2	915660	919266	R	TA05710	complement(join(<915660..915919,915952..916108,916173..916600,916635..916815,916892..917122,917154..917369,917401..917535,917569..917898,917982..918248,918277..918653,918684..918742,918773..919066,919097..919150,919187..>919266))	Theileria annulata	3863922
TA05700	mRNA	TA05700	NC_011129.2	919808	921763	R	TA05700	complement(join(<919808..920458,920527..920584,920673..>921763))	Theileria annulata	3863920
TA05695	mRNA	TA05695	NC_011129.2	922006	924805	D	TA05695	join(<922006..922125,922237..923032,923063..923151,923181..923765,923825..924112,924161..924707,924738..>924805)	Theileria annulata	3863919
TA05690	mRNA	TA05690	NC_011129.2	925812	928002	R	TA05690	complement(join(<925812..925939,925968..926052,926082..926210,926288..926806,926869..926934,926968..927064,927115..927326,927357..927459,927534..927675,927716..927814,927849..>928002))	Theileria annulata	3863918
TA05685	mRNA	TA05685	NC_011129.2	928170	929500	R	TA05685	complement(join(<928170..928385,928456..929051,929083..>929500))	Theileria annulata	3863917
TA05680	mRNA	TA05680	NC_011129.2	929706	931136	D	TA05680	<929706..>931136	Theileria annulata	3863916
TA05675	mRNA	TA05675	NC_011129.2	931211	932362	R	TA05675	complement(<931211..>932362)	Theileria annulata	3863915
TA05670	mRNA	TA05670	NC_011129.2	932729	933340	D	TA05670	join(<932729..932913,932958..933078,933113..>933340)	Theileria annulata	3863914
TA05665	mRNA	TA05665	NC_011129.2	933610	935231	D	TA05665	join(<933610..933719,933752..934014,934052..934157,934336..934460,934535..934975,935005..>935231)	Theileria annulata	3863913
TA05660	mRNA	TA05660	NC_011129.2	935302	936749	R	TA05660	complement(join(<935302..936590,936656..>936749))	Theileria annulata	3863912
TA05655	mRNA	TA05655	NC_011129.2	937008	938033	R	TA05655	complement(join(<937008..937098,937129..937229,937260..937427,937462..937536,937569..937654,937683..937724,937756..937925,937969..>938033))	Theileria annulata	3863911
TA07020	mRNA	TA07020	NC_011129.2	938139	939166	D	TA07020	join(<938139..938201,938232..938346,938377..938453,938483..938574,938605..938748,938810..938879,938949..939026,939059..>939166)	Theileria annulata	3864506
TA07015	mRNA	TA07015	NC_011129.2	939212	940954	R	TA07015	complement(join(<939212..940027,940103..>940954))	Theileria annulata	3864505
TA07010	mRNA	TA07010	NC_011129.2	941268	941779	R	TA07010	complement(join(<941268..941362,941458..941519,941589..>941779))	Theileria annulata	3864504
TA07005	mRNA	TA07005	NC_011129.2	942135	943844	D	TA07005	join(<942135..942281,942350..942498,942588..942742,942793..942914,943006..943144,943214..943330,943361..943611,943698..>943844)	Theileria annulata	3864189
TA07000	mRNA	TA07000	NC_011129.2	944621	946036	D	TA07000	join(<944621..944946,944998..945749,945848..945924,945956..>946036)	Theileria annulata	3864188
TA06995	mRNA	TA06995	NC_011129.2	946098	950127	R	TA06995	complement(join(<946098..947728,947980..948406,948447..948590,948645..948864,948954..949176,949247..949337,949371..949478,949531..>950127))	Theileria annulata	3864187
TA06990	mRNA	TA06990	NC_011129.2	950769	953331	D	TA06990	join(<950769..951941,951970..951978,952013..952630,952661..952948,953005..953112,953187..953229,953264..>953331)	Theileria annulata	3864186
TA06985	mRNA	TA06985	NC_011129.2	953364	956265	D	TA06985	join(<953364..953523,953554..954599,954667..954805,954845..955073,955134..955707,955769..956175,956205..>956265)	Theileria annulata	3864185
TA06980	mRNA	TA06980	NC_011129.2	957073	958587	R	TA06980	complement(<957073..>958587)	Theileria annulata	3864184
TA06975	mRNA	TA06975	NC_011129.2	958790	961042	R	TA06975	complement(<958790..>961042)	Theileria annulata	3864183
TA06970	mRNA	TA06970	NC_011129.2	961240	962685	R	TA06970	complement(<961240..>962685)	Theileria annulata	3864182
TA06965	mRNA	TA06965	NC_011129.2	962984	965991	R	TA06965	complement(join(<962984..965277,965361..>965991))	Theileria annulata	3864181
TA06960	mRNA	TA06960	NC_011129.2	966629	973574	D	TA06960	join(<966629..966746,966964..967028,967581..968942,969153..969398,969446..969660,970077..970570,970659..970967,971037..971095,971425..971722,971796..971924,972044..972380,972414..972735,972836..972957,973313..>973574)	Theileria annulata	3864180
TA06955	mRNA	TA06955	NC_011129.2	973702	975354	R	TA06955	complement(<973702..>975354)	Theileria annulata	3864179
TA06950	mRNA	TA06950	NC_011129.2	975546	976937	R	TA06950	complement(<975546..>976937)	Theileria annulata	3864178
TA06945	mRNA	TA06945	NC_011129.2	977210	977797	R	TA06945	complement(<977210..>977797)	Theileria annulata	3864177
TA06940	mRNA	TA06940	NC_011129.2	978189	980465	D	TA06940	<978189..>980465	Theileria annulata	3864176
TA06935	mRNA	TA06935	NC_011129.2	980580	981179	R	TA06935	complement(join(<980580..980899,981026..>981179))	Theileria annulata	3864175
TA06930	mRNA	TA06930	NC_011129.2	981583	982225	R	TA06930	complement(join(<981583..981712,981902..981974,982006..>982225))	Theileria annulata	3864174
TA06925	mRNA	TA06925	NC_011129.2	982408	984217	R	TA06925	complement(join(<982408..982601,982632..982705,982770..983470,983500..983755,983805..>984217))	Theileria annulata	3864173
TA06920	mRNA	TA06920	NC_011129.2	984505	985885	D	TA06920	join(<984505..984861,984954..985580,985649..985759,985796..>985885)	Theileria annulata	3864172
TA06915	mRNA	TA06915	NC_011129.2	986013	987335	D	TA06915	<986013..>987335	Theileria annulata	3864171
TA06910	mRNA	TA06910	NC_011129.2	987393	987884	R	TA06910	complement(join(<987393..987648,987703..>987884))	Theileria annulata	3864170
TA06905	mRNA	TA06905	NC_011129.2	988146	990740	D	TA06905	join(<988146..988476,988513..988574,988617..>990740)	Theileria annulata	3863772
TA06900	mRNA	TA06900	NC_011129.2	990940	993207	D	TA06900	<990940..>993207	Theileria annulata	3863771
TA06895	mRNA	TA06895	NC_011129.2	993322	994827	D	TA06895	<993322..>994827	Theileria annulata	3863770
TA06890	mRNA	TA06890	NC_011129.2	994895	996151	R	TA06890	complement(join(<994895..995648,995724..>996151))	Theileria annulata	3863769
TA06885	mRNA	TA06885	NC_011129.2	997386	999071	D	TA06885	join(<997386..997497,997528..998211,998244..998551,998583..998789,998820..>999071)	Theileria annulata	3863768
TA06880	mRNA	TA06880	NC_011129.2	999156	1000460	R	TA06880	complement(<999156..>1000460)	Theileria annulata	3863767
TA06875	mRNA	TA06875	NC_011129.2	1000633	1004501	R	TA06875	complement(join(<1000633..1000849,1000879..1001142,1001201..1001300,1001333..1001726,1001756..1002215,1002253..1002746,1002779..1002874,1002939..1003253,1003283..1003408,1003448..1003576,1003607..1003707,1003769..1003983,1004065..>1004501))	Theileria annulata	3863766
TA06870	mRNA	TA06870	NC_011129.2	1005091	1007718	D	TA06870	join(<1005091..1005213,1005255..1005342,1005384..1005586,1005618..1005746,1005776..1006034,1006090..1006299,1006360..1006463,1006514..1006605,1006666..1006864,1006931..1007038,1007076..1007369,1007437..>1007718)	Theileria annulata	3863765
TA06865	mRNA	TA06865	NC_011129.2	1008419	1009150	D	TA06865	join(<1008419..1008530,1008627..>1009150)	Theileria annulata	3863764
TA06860	mRNA	TA06860	NC_011129.2	1009270	1012353	R	TA06860	complement(join(<1009270..1009429,1009501..1009679,1009712..1009899,1009943..1010118,1010160..1010791,1010856..1010945,1010980..1011154,1011201..1012254,1012293..>1012353))	Theileria annulata	3863763
TA06855	mRNA	TA06855	NC_011129.2	1013005	1015042	D	TA06855	join(<1013005..1013052,1013086..1014139,1014171..>1015042)	Theileria annulata	3863762
TA06850	mRNA	TA06850	NC_011129.2	1015184	1015725	D	TA06850	join(<1015184..1015365,1015419..1015563,1015594..>1015725)	Theileria annulata	3863761
TA06845	mRNA	TA06845	NC_011129.2	1015811	1018398	R	TA06845	complement(join(<1015811..1016093,1016126..1016382,1016414..1016515,1016557..1016662,1016748..1016872,1016925..1017108,1017149..1017532,1017575..1018101,1018131..1018175,1018231..>1018398))	Theileria annulata	3863760
TA06840	mRNA	TA06840	NC_011129.2	1018717	1021937	D	TA06840	join(<1018717..1021010,1021070..1021539,1021628..1021743,1021827..>1021937)	Theileria annulata	3863759
TA06835	mRNA	TA06835	NC_011129.2	1022512	1024164	D	TA06835	join(<1022512..1022670,1022729..1022817,1022848..1023041,1023083..1023326,1023395..1023499,1023532..1023877,1023943..>1024164)	Theileria annulata	3863758
TA06830	mRNA	TA06830	NC_011129.2	1024238	1024814	R	TA06830	complement(join(<1024238..1024537,1024569..>1024814))	Theileria annulata	3863757
TA06825	mRNA	TA06825	NC_011129.2	1024942	1026612	R	TA06825	complement(<1024942..>1026612)	Theileria annulata	3863756
TA06820	mRNA	TA06820	NC_011129.2	1027331	1029042	D	TA06820	join(<1027331..1027514,1027547..1027774,1027808..1027993,1028024..1028179,1028212..1028633,1028666..1028793,1028834..1028921,1028962..>1029042)	Theileria annulata	3863755
TA06815	mRNA	TA06815	NC_011129.2	1029167	1030151	D	TA06815	join(<1029167..1029335,1029399..1029474,1029533..1029644,1029816..1029828,1029858..1029924,1029954..1029991,1030030..>1030151)	Theileria annulata	3863754
TA06810	mRNA	TA06810	NC_011129.2	1030218	1031218	R	TA06810	complement(join(<1030218..1030349,1030403..1030494,1030526..1030570,1030628..1030728,1030757..1030806,1030838..1030895,1030929..>1031218))	Theileria annulata	3864015
TA06805	mRNA	TA06805	NC_011129.2	1031624	1032355	D	TA06805	join(<1031624..1031903,1031935..1032027,1032059..1032091,1032121..1032166,1032196..>1032355)	Theileria annulata	3864014
TA06800	mRNA	TA06800	NC_011129.2	1032789	1033111	R	TA06800	complement(join(<1032789..1032929,1032965..>1033111))	Theileria annulata	3864013
TA06795	mRNA	TA06795	NC_011129.2	1033159	1036122	R	TA06795	complement(<1033159..>1036122)	Theileria annulata	3864012
TA06790	mRNA	TA06790	NC_011129.2	1036871	1038929	D	TA06790	join(<1036871..1037015,1037077..1037145,1037175..1037452,1037483..1037719,1037751..1037961,1037993..1038111,1038141..1038255,1038294..1038689,1038721..>1038929)	Theileria annulata	3864011
TA06785	mRNA	TA06785	NC_011129.2	1039034	1041298	D	TA06785	<1039034..>1041298	Theileria annulata	3864010
TA06780	mRNA	TA06780	NC_011129.2	1041347	1042678	D	TA06780	join(<1041347..1041547,1041579..1041650,1041681..1041801,1041834..1042244,1042275..1042489,1042520..>1042678)	Theileria annulata	3864009
TA06775	mRNA	TA06775	NC_011129.2	1042746	1044615	R	TA06775	complement(join(<1042746..1043132,1043164..1044453,1044484..>1044615))	Theileria annulata	3864008
TA06770	mRNA	TA06770	NC_011129.2	1045217	1045938	R	TA06770	complement(join(<1045217..1045408,1045445..1045546,1045586..1045618,1045651..>1045938))	Theileria annulata	3864007
TA06765	mRNA	TA06765	NC_011129.2	1046218	1047205	D	TA06765	join(<1046218..1046329,1046367..1046602,1046638..1046994,1047026..>1047205)	Theileria annulata	3864006
TA06760	mRNA	TA06760	NC_011129.2	1047453	1048069	R	TA06760	complement(join(<1047453..1047796,1047852..1047911,1047946..>1048069))	Theileria annulata	3864005
TA06755	mRNA	TA06755	NC_011129.2	1048203	1049026	R	TA06755	complement(join(<1048203..1048265,1048301..1048345,1048375..1048426,1048456..1048525,1048555..1048705,1048748..1048825,1048855..1048950,1048988..>1049026))	Theileria annulata	3864004
TA06750	mRNA	TA06750	NC_011129.2	1050242	1054822	D	TA06750	<1050242..>1054822	Theileria annulata	3864003
TA06745	mRNA	TA06745	NC_011129.2	1055026	1057029	R	TA06745	complement(<1055026..>1057029)	Theileria annulata	3864002
TA06740	mRNA	TA06740	NC_011129.2	1057252	1058778	R	TA06740	complement(<1057252..>1058778)	Theileria annulata	3864001
TA06735	mRNA	TA06735	NC_011129.2	1058998	1060570	R	TA06735	complement(join(<1058998..1059036,1059218..1059351,1059386..1060300,1060331..1060384,1060417..1060456,1060490..>1060570))	Theileria annulata	3864000
TA06730	mRNA	TA06730	NC_011129.2	1062713	1063881	R	TA06730	complement(join(<1062713..1062862,1062895..1063064,1063099..1063232,1063306..1063465,1063570..1063713,1063743..>1063881))	Theileria annulata	3863999
TA06725	mRNA	TA06725	NC_011129.2	1064185	1066231	R	TA06725	complement(join(<1064185..1064323,1064355..1064421,1064486..1064817,1064848..1064916,1064949..1065083,1065144..1065287,1065342..1065448,1065516..1065597,1065629..1065712,1065762..>1066231))	Theileria annulata	3863998
TA06720	mRNA	TA06720	NC_011129.2	1067084	1068430	D	TA06720	<1067084..>1068430	Theileria annulata	3863997
TA06715	mRNA	TA06715	NC_011129.2	1068641	1069982	D	TA06715	join(<1068641..1068721,1068976..1069145,1069175..1069478,1069538..1069814,1069846..>1069982)	Theileria annulata	3863996
TA06710	mRNA	TA06710	NC_011129.2	1070191	1073004	D	TA06710	join(<1070191..1071045,1071077..1071655,1071717..1071953,1071982..1072170,1072201..>1073004)	Theileria annulata	3863487
TA06705	mRNA	TA06705	NC_011129.2	1073039	1073599	R	TA06705	complement(join(<1073039..1073220,1073293..>1073599))	Theileria annulata	3863486
TA06700	mRNA	TA06700	NC_011129.2	1073674	1081790	D	TA06700	join(<1073674..1076834,1076874..1077061,1077166..1077294,1077419..1080613,1080679..>1081790)	Theileria annulata	3863485
TA06695	mRNA	TA06695	NC_011129.2	1082075	1084825	D	TA06695	join(<1082075..1082458,1082500..1082825,1082858..1082930,1083001..1083078,1083136..1083301,1083331..1083436,1083468..1083673,1083772..1084171,1084201..1084294,1084346..>1084825)	Theileria annulata	3863484
TA06690	mRNA	TA06690	NC_011129.2	1085655	1086134	D	TA06690	<1085655..>1086134	Theileria annulata	3863483
TA06685	mRNA	TA06685	NC_011129.2	1086304	1090380	R	TA06685	complement(<1086304..>1090380)	Theileria annulata	3863482
TA06680	mRNA	TA06680	NC_011129.2	1090862	1091974	D	TA06680	<1090862..>1091974	Theileria annulata	3863481
TA06675	mRNA	TA06675	NC_011129.2	1092166	1092960	R	TA06675	complement(join(<1092166..1092333,1092366..1092500,1092608..1092844,1092895..>1092960))	Theileria annulata	3863480
TA06670	mRNA	TA06670	NC_011129.2	1093083	1094627	D	TA06670	<1093083..>1094627	Theileria annulata	3863479
TA06665	mRNA	TA06665	NC_011129.2	1094716	1095373	D	TA06665	join(<1094716..1094797,1094832..>1095373)	Theileria annulata	3863478
TA06635	mRNA	TA06635	NC_011129.2	1095634	1098153	D	TA06635	<1095634..>1098153	Theileria annulata	3863473
TA06580	mRNA	TA06580	NC_011129.2	1098412	1099746	D	TA06580	<1098412..>1099746	Theileria annulata	3863423
TA06475	mRNA	TA06475	NC_011129.2	1099951	1100970	R	TA06475	complement(<1099951..>1100970)	Theileria annulata	3864534
TA06420	mRNA	TA06420	NC_011129.2	1101179	1101463	R	TA06420	complement(<1101179..>1101463)	Theileria annulata	3864523
TA06365	mRNA	TA06365	NC_011129.2	1101752	1103878	R	TA06365	complement(join(<1101752..1101945,1101976..1102063,1102098..1102246,1102277..1102442,1102476..1102553,1102589..1102686,1102716..1102830,1102873..1102947,1102979..1103150,1103198..1103256,1103328..1103375,1103425..1103523,1103558..1103731,1103762..>1103878))	Theileria annulata	3864218
TA06310	mRNA	TA06310	NC_011129.2	1104121	1105425	R	TA06310	complement(<1104121..>1105425)	Theileria annulata	3863467
TA06255	mRNA	TA06255	NC_011129.2	1105866	1107615	R	TA06255	complement(join(<1105866..1106120,1106181..1106514,1106568..1106778,1106807..1106916,1106948..1107000,1107082..1107260,1107338..1107419,1107532..>1107615))	Theileria annulata	3863456
TA06250	mRNA	TA06250	NC_011129.2	1107894	1110405	D	TA06250	join(<1107894..1108032,1108065..1108141,1108172..1109072,1109163..1109356,1109392..1109478,1109509..>1110405)	Theileria annulata	3863455
TA06145	mRNA	TA06145	NC_011129.2	1110461	1113866	R	TA06145	complement(join(<1110461..1112262,1112351..>1113866))	Theileria annulata	3863700
TA06140	mRNA	TA06140	NC_011129.2	1114727	1116905	D	TA06140	join(<1114727..1116508,1116612..>1116905)	Theileria annulata	3863699
TA06085	mRNA	TA06085	NC_011129.2	1116941	1119599	D	TA06085	join(<1116941..1116956,1117142..1117374,1117407..1117494,1117601..1117708,1117772..1117872,1117966..1118253,1118284..1118379,1118412..1118561,1118654..1118770,1118841..1119017,1119091..1119396,1119489..>1119599)	Theileria annulata	3863804
TA05980	mRNA	TA05980	NC_011129.2	1119719	1121345	R	TA05980	complement(join(<1119719..1120051,1120109..1120642,1120718..1120810,1120887..1120983,1121099..1121247,1121277..>1121345))	Theileria annulata	3864299
TA05925	mRNA	TA05925	NC_011129.2	1121883	1123087	R	TA05925	complement(join(<1121883..1122227,1122259..1122310,1122362..1122591,1122654..1122701,1122735..1122840,1122879..>1123087))	Theileria annulata	3864288
TA05870	mRNA	TA05870	NC_011129.2	1123466	1126027	R	TA05870	complement(<1123466..>1126027)	Theileria annulata	3864277
TA05815	mRNA	TA05815	NC_011129.2	1126651	1128534	R	TA05815	complement(<1126651..>1128534)	Theileria annulata	3863565
TA05760	mRNA	TA05760	NC_011129.2	1129286	1131043	R	TA05760	complement(<1129286..>1131043)	Theileria annulata	3863554
TA05705	mRNA	TA05705	NC_011129.2	1131774	1133951	R	TA05705	complement(<1131774..>1133951)	Theileria annulata	3863921
TA05650	mRNA	TA05650	NC_011129.2	1134497	1134960	R	TA05650	complement(join(<1134497..1134550,1134580..1134705,1134736..1134765,1134796..>1134960))	Theileria annulata	3863910
TA05645	mRNA	TA05645	NC_011129.2	1135184	1141506	D	TA05645	join(<1135184..1135336,1135369..1135548,1135648..1135920,1136155..1136224,1136256..1136740,1137061..1137201,1137234..1137328,1137418..1137552,1137946..1138843,1138905..1138996,1139464..1139819,1139876..>1141506)	Theileria annulata	3863909
TA05640	mRNA	TA05640	NC_011129.2	1142178	1143809	D	TA05640	join(<1142178..1142451,1143526..>1143809)	Theileria annulata	3863908
TA05635	mRNA	TA05635	NC_011129.2	1144122	1144613	D	TA05635	<1144122..>1144613	Theileria annulata	3863907
TA05630	mRNA	TA05630	NC_011129.2	1146267	1147431	D	TA05630	join(<1146267..1146530,1146668..1146788,1146852..1146951,1147054..1147201,1147318..>1147431)	Theileria annulata	3863527
TA05626	mRNA	TA05626	NC_011129.2	1147771	1149832	D	TA05626	join(<1147771..1147896,1148020..1148103,1148136..1148246,1148969..>1149832)	Theileria annulata	3863526
TA05625	mRNA	TA05625	NC_011129.2	1150624	1152986	D	TA05625	join(<1150624..1150648,1150900..>1152986)	Theileria annulata	3863525
TA05620	mRNA	TA05620	NC_011129.2	1153549	1154572	D	TA05620	join(<1153549..1153777,1154018..1154382,1154492..>1154572)	Theileria annulata	3863524
TA05615	mRNA	TA05615	NC_011129.2	1155914	1156504	D	TA05615	<1155914..>1156504	Theileria annulata	3863523
TA05610	mRNA	TA05610	NC_011129.2	1156841	1158773	R	TA05610	complement(join(<1156841..1158683,1158742..>1158773))	Theileria annulata	3863522
TA05605	mRNA	TA05605	NC_011129.2	1158826	1160182	D	TA05605	join(<1158826..1158829,1159119..1159231,1159319..>1160182)	Theileria annulata	3863521
TA18476	mRNA	TA18476	NC_011129.2	1161513	1165313	D	TA18476	<1161513..>1165313	Theileria annulata	3864315
TA02750	mRNA	TA02750	NC_011129.2	1167748	1170131	R	TA02750	complement(join(<1167748..1168136,1168377..1168617,1168722..1168853,1169219..1169905,1170021..>1170131))	Theileria annulata	3863964
TA02755	mRNA	TA02755	NC_011129.2	1171727	1173966	D	TA02755	join(<1171727..1172666,1172732..1172786,1172903..1173019,1173143..1173209,1173240..1173430,1173482..1173608,1173687..1173827,1173868..>1173966)	Theileria annulata	3863965
TA02760	mRNA	TA02760	NC_011129.2	1176417	1178595	R	TA02760	complement(join(<1176417..1178363,1178512..>1178595))	Theileria annulata	3863966
TA02765	mRNA	TA02765	NC_011129.2	1179883	1185333	R	TA02765	complement(join(<1179883..1180765,1182021..1183440,1183661..1183849,1184014..1184104,1184213..1184332,1184458..1184584,1185185..>1185333))	Theileria annulata	3863967
TA02770	mRNA	TA02770	NC_011129.2	1186502	1186945	R	TA02770	complement(<1186502..>1186945)	Theileria annulata	3863968
TA02775	mRNA	TA02775	NC_011129.2	1187102	1189380	R	TA02775	complement(join(<1187102..1187260,1187662..1187829,1188154..1188361,1188470..1188639,1188892..>1189380))	Theileria annulata	3863969
TA02780	mRNA	TA02780	NC_011129.2	1189450	1191917	R	TA02780	complement(join(<1189450..1191717,1191807..>1191917))	Theileria annulata	3863970
TA02785	mRNA	TA02785	NC_011129.2	1193314	1194353	D	TA02785	join(<1193314..1193360,1193392..1193408,1193438..1193570,1193686..1193780,1193856..1193947,1194022..1194057,1194091..1194103,1194133..1194218,1194306..>1194353)	Theileria annulata	3863971
TA02790	mRNA	TA02790	NC_011129.2	1194458	1195142	R	TA02790	complement(join(<1194458..1194642,1194848..>1195142))	Theileria annulata	3863972
TA02795	mRNA	TA02795	NC_011129.2	1196179	1197506	R	TA02795	complement(join(<1196179..1196447,1196787..1196893,1197406..>1197506))	Theileria annulata	3863973
TA02800	mRNA	TA02800	NC_011129.2	1197689	1201197	D	TA02800	join(<1197689..1198858,1198969..1199121,1199315..1199392,1199424..1199898,1200029..1200104,1200190..1200914,1201036..1201056,1201166..>1201197)	Theileria annulata	3863974
TA02805	mRNA	TA02805	NC_011129.2	1201366	1203305	R	TA02805	complement(join(<1201366..1202627,1202936..>1203305))	Theileria annulata	3863975
TA02810	mRNA	TA02810	NC_011129.2	1205203	1207627	D	TA02810	join(<1205203..1205749,1206045..>1207627)	Theileria annulata	3864407
TA02815	mRNA	TA02815	NC_011129.2	1207816	1209117	D	TA02815	<1207816..>1209117	Theileria annulata	3864408
TA02820	mRNA	TA02820	NC_011129.2	1209208	1210319	R	TA02820	complement(join(<1209208..1209376,1209465..1209535,1209599..1209733,1209807..1209887,1209917..1210078,1210173..>1210319))	Theileria annulata	3864409
TA02825	mRNA	TA02825	NC_011129.2	1210973	1211524	D	TA02825	join(<1210973..1211044,1211074..1211138,1211275..>1211524)	Theileria annulata	3864410
TA02830	mRNA	TA02830	NC_011129.2	1211674	1213537	R	TA02830	complement(join(<1211674..1212262,1212307..1212773,1212833..1213021,1213116..1213255,1213290..1213371,1213469..>1213537))	Theileria annulata	3864411
TA02835	mRNA	TA02835	NC_011129.2	1213816	1214940	R	TA02835	complement(join(<1213816..1213973,1214037..1214100,1214131..>1214940))	Theileria annulata	3864412
TA02840	mRNA	TA02840	NC_011129.2	1215325	1216824	D	TA02840	join(<1215325..1215400,1215509..1215691,1215734..1216130,1216163..1216382,1216490..1216509,1216626..>1216824)	Theileria annulata	3864413
TA02845	mRNA	TA02845	NC_011129.2	1217435	1225972	D	TA02845	<1217435..>1225972	Theileria annulata	3864414
TA02850	mRNA	TA02850	NC_011129.2	1226749	1227021	R	TA02850	complement(join(<1226749..1226871,1226968..>1227021))	Theileria annulata	3864415
TA02855	mRNA	TA02855	NC_011129.2	1227224	1228013	D	TA02855	join(<1227224..1227406,1227493..1227639,1227696..>1228013)	Theileria annulata	3864416
TA02860	mRNA	TA02860	NC_011129.2	1228174	1229861	D	TA02860	join(<1228174..1228678,1228708..1228847,1228889..1228977,1229008..1229092,1229122..1229160,1229190..1229249,1229283..>1229861)	Theileria annulata	3864417
TA02865	mRNA	TA02865	NC_011129.2	1230500	1231906	D	TA02865	<1230500..>1231906	Theileria annulata	3864418
TA02870	mRNA	TA02870	NC_011129.2	1232088	1233475	R	TA02870	complement(join(<1232088..1233074,1233176..>1233475))	Theileria annulata	3864419
TA02875	mRNA	TA02875	NC_011129.2	1234471	1235859	R	TA02875	complement(join(<1234471..1234623,1234654..1234806,1234882..>1235859))	Theileria annulata	3864420
TA02880	mRNA	TA02880	NC_011129.2	1236420	1239925	R	TA02880	complement(join(<1236420..1236581,1236619..1236834,1236868..1237092,1237146..1237218,1237248..1237325,1237376..1237503,1237533..1237690,1237740..1237895,1237976..1238270,1238347..1238410,1238463..1239709,1239745..1239821,1239853..>1239925))	Theileria annulata	3864421
TA02885	mRNA	TA02885	NC_011129.2	1240452	1241440	D	TA02885	join(<1240452..1240563,1240673..1240774,1240803..1240893,1240968..1241047,1241107..1241286,1241316..>1241440)	Theileria annulata	3864422
TA02890	mRNA	TA02890	NC_011129.2	1241619	1243270	R	TA02890	complement(join(<1241619..1241807,1241940..1242206,1242282..1242514,1242546..1242660,1242740..>1243270))	Theileria annulata	3864423
TA02895	mRNA	TA02895	NC_011129.2	1244039	1245179	R	TA02895	complement(join(<1244039..1244274,1244334..1244545,1244581..>1245179))	Theileria annulata	3864424
TA02900	mRNA	TA02900	NC_011129.2	1245536	1249309	D	TA02900	join(<1245536..1249098,1249129..>1249309)	Theileria annulata	3864425
TA02905	mRNA	TA02905	NC_011129.2	1249395	1251276	R	TA02905	complement(join(<1249395..1249733,1249804..1250354,1250390..1251148,1251216..>1251276))	Theileria annulata	3864387
TA02910	mRNA	TA02910	NC_011129.2	1251711	1253249	R	TA02910	complement(join(<1251711..1252345,1252403..>1253249))	Theileria annulata	3864388
TA02915	mRNA	TA02915	NC_011129.2	1254087	1255133	D	TA02915	<1254087..>1255133	Theileria annulata	3864389
TA02920	mRNA	TA02920	NC_011129.2	1255202	1258730	R	TA02920	complement(join(<1255202..1258323,1258394..>1258730))	Theileria annulata	3864390
TA02925	mRNA	TA02925	NC_011129.2	1259859	1261110	R	TA02925	complement(join(<1259859..1260100,1260169..1260559,1260619..>1261110))	Theileria annulata	3864391
TA02930	mRNA	TA02930	NC_011129.2	1261190	1264015	R	TA02930	complement(<1261190..>1264015)	Theileria annulata	3864392
TA02935	mRNA	TA02935	NC_011129.2	1264165	1266519	R	TA02935	complement(join(<1264165..1264994,1265044..1265216,1265266..1265339,1265401..1265472,1265504..1265601,1265640..1265718,1265784..1265933,1265964..1266134,1266218..1266310,1266382..>1266519))	Theileria annulata	3864393
TA02940	mRNA	TA02940	NC_011129.2	1266666	1267839	D	TA02940	join(<1266666..1267305,1267391..>1267839)	Theileria annulata	3864394
TA02945	mRNA	TA02945	NC_011129.2	1268000	1269888	D	TA02945	join(<1268000..1268119,1268172..1269048,1269113..>1269888)	Theileria annulata	3864395
TA02955	mRNA	TA02955	NC_011129.2	1270141	1272009	D	TA02955	<1270141..>1272009	Theileria annulata	3864396
TA02960	mRNA	TA02960	NC_011129.2	1272358	1277254	D	TA02960	join(<1272358..1272777,1272808..1273112,1273158..1274507,1274570..1275482,1275548..1276118,1276153..1276346,1276394..>1277254)	Theileria annulata	3864397
TA02965	mRNA	TA02965	NC_011129.2	1277259	1277634	R	TA02965	complement(join(<1277259..1277501,1277560..>1277634))	Theileria annulata	3864398
TA02970	mRNA	TA02970	NC_011129.2	1277915	1279790	R	TA02970	complement(join(<1277915..1278492,1278637..1278715,1278801..1278941,1278981..1279259,1279344..1279486,1279580..>1279790))	Theileria annulata	3864399
TA02975	mRNA	TA02975	NC_011129.2	1280029	1281446	R	TA02975	complement(join(<1280029..1280392,1280428..1280444,1280463..1280627,1280676..1280799,1280836..1280964,1280998..>1281446))	Theileria annulata	3864400
TA02980	mRNA	TA02980	NC_011129.2	1281560	1283908	R	TA02980	complement(<1281560..>1283908)	Theileria annulata	3864401
TA02985	mRNA	TA02985	NC_011129.2	1284582	1286085	R	TA02985	complement(join(<1284582..1285026,1285108..1285318,1285395..>1286085))	Theileria annulata	3864402
TA02990	mRNA	TA02990	NC_011129.2	1287241	1289357	D	TA02990	join(<1287241..1287523,1287613..1289075,1289190..>1289357)	Theileria annulata	3864403
TA02995	mRNA	TA02995	NC_011129.2	1290014	1294966	D	TA02995	<1290014..>1294966	Theileria annulata	3864404
TA03000	mRNA	TA03000	NC_011129.2	1295306	1299889	R	TA03000	complement(<1295306..>1299889)	Theileria annulata	3864405
TA03005	mRNA	TA03005	NC_011129.2	1300385	1302719	D	TA03005	join(<1300385..1300561,1300603..1300722,1300763..1300885,1300938..1301039,1301208..1301358,1301399..1301456,1301492..1301633,1301724..1301899,1301932..1302034,1302087..1302148,1302266..>1302719)	Theileria annulata	3864406
TA03010	mRNA	TA03010	NC_011129.2	1302863	1303576	R	TA03010	complement(<1302863..>1303576)	Theileria annulata	3863869
TA03015	mRNA	TA03015	NC_011129.2	1303778	1304509	R	TA03015	complement(join(<1303778..1304146,1304214..1304315,1304358..1304435,1304468..>1304509))	Theileria annulata	3863870
TA03020	mRNA	TA03020	NC_011129.2	1304808	1307977	D	TA03020	join(<1304808..1306228,1306297..1306479,1306542..1306759,1306829..1307026,1307094..1307330,1307397..>1307977)	Theileria annulata	3863871
TA03025	mRNA	TA03025	NC_011129.2	1308022	1314454	D	TA03025	join(<1308022..1308048,1308110..>1314454)	Theileria annulata	3863872
TA03030	mRNA	TA03030	NC_011129.2	1315117	1316381	R	TA03030	complement(join(<1315117..1315277,1315337..1315430,1315519..1315595,1315627..1315739,1315772..1315810,1315967..1316036,1316168..>1316381))	Theileria annulata	3863873
TA03035	mRNA	TA03035	NC_011129.2	1316645	1317349	R	TA03035	complement(join(<1316645..1316730,1316815..1316952,1316984..1317053,1317153..1317217,1317247..>1317349))	Theileria annulata	3863874
TA03040	mRNA	TA03040	NC_011129.2	1317498	1318550	R	TA03040	complement(join(<1317498..1317613,1317673..1317754,1317989..1318003,1318030..1318071,1318413..>1318550))	Theileria annulata	3863875
TA03045	mRNA	TA03045	NC_011129.2	1318752	1320881	D	TA03045	join(<1318752..1319075,1319207..1319440,1319530..1319703,1319987..1320066,1320199..1320284,1320315..1320394,1320425..1320540,1320594..1320749,1320791..>1320881)	Theileria annulata	3863876
TA03050	mRNA	TA03050	NC_011129.2	1320991	1322396	R	TA03050	complement(join(<1320991..1321235,1321308..1321372,1321410..1321597,1321643..1321751,1321841..1322022,1322256..>1322396))	Theileria annulata	3863877
TA03055	mRNA	TA03055	NC_011129.2	1322823	1323944	D	TA03055	join(<1322823..1322942,1323049..1323153,1323318..1323458,1323582..>1323944)	Theileria annulata	3863878
TA03060	mRNA	TA03060	NC_011129.2	1324270	1324944	D	TA03060	<1324270..>1324944	Theileria annulata	3863879
TA03065	mRNA	TA03065	NC_011129.2	1325193	1326420	R	TA03065	complement(join(<1325193..1325942,1326247..>1326420))	Theileria annulata	3863880
TA03070	mRNA	TA03070	NC_011129.2	1326857	1328682	R	TA03070	complement(join(<1326857..1327918,1327962..1328065,1328106..>1328682))	Theileria annulata	3863881
TA03075	mRNA	TA03075	NC_011129.2	1328983	1330237	D	TA03075	join(<1328983..1329100,1329359..1329550,1329665..1329868,1330083..>1330237)	Theileria annulata	3863882
TA03080	mRNA	TA03080	NC_011129.2	1330942	1335044	D	TA03080	join(<1330942..1334089,1334204..1334334,1334521..1334642,1334744..>1335044)	Theileria annulata	3863883
TA03085	mRNA	TA03085	NC_011129.2	1335076	1336738	R	TA03085	complement(join(<1335076..1335310,1335475..1335633,1335665..1336101,1336343..1336375,1336411..1336430,1336561..>1336738))	Theileria annulata	3863884
TA03090	mRNA	TA03090	NC_011129.2	1337014	1338381	R	TA03090	complement(join(<1337014..1337268,1337341..1337418,1337567..1337648,1337812..1337964,1338101..>1338381))	Theileria annulata	3863885
TA03095	mRNA	TA03095	NC_011129.2	1338579	1338896	D	TA03095	<1338579..>1338896	Theileria annulata	3863886
TA03100	mRNA	TA03100	NC_011129.2	1339179	1340896	D	TA03100	join(<1339179..1339290,1339459..1339719,1339834..1340010,1340226..>1340896)	Theileria annulata	3863887
TA03105	mRNA	TA03105	NC_011129.2	1341012	1341167	D	TA03105	<1341012..>1341167	Theileria annulata	3863508
TA03110	mRNA	TA03110	NC_011129.2	1341437	1343296	R	TA03110	complement(<1341437..>1343296)	Theileria annulata	3863509
TA03115	mRNA	TA03115	NC_011129.2	1343582	1346899	R	TA03115	complement(<1343582..>1346899)	Theileria annulata	3863510
TA03120	mRNA	TA03120	NC_011129.2	1347606	1348295	R	TA03120	complement(<1347606..>1348295)	Theileria annulata	3863511
TA03125	mRNA	TA03125	NC_011129.2	1348922	1350172	R	TA03125	complement(<1348922..>1350172)	Theileria annulata	3863512
TA03130	mRNA	TA03130	NC_011129.2	1350792	1352081	R	TA03130	complement(<1350792..>1352081)	Theileria annulata	3863513
TA03135	mRNA	TA03135	NC_011129.2	1352701	1354377	R	TA03135	complement(<1352701..>1354377)	Theileria annulata	3863514
TA03140	mRNA	TA03140	NC_011129.2	1354992	1356164	R	TA03140	complement(<1354992..>1356164)	Theileria annulata	3863515
TA03145	mRNA	TA03145	NC_011129.2	1356648	1357784	R	TA03145	complement(<1356648..>1357784)	Theileria annulata	3863516
TA03150	mRNA	TA03150	NC_011129.2	1358162	1359373	R	TA03150	complement(<1358162..>1359373)	Theileria annulata	3863517
TA03155	mRNA	TA03155	NC_011129.2	1359971	1360876	R	TA03155	complement(<1359971..>1360876)	Theileria annulata	3863518
TA03160	mRNA	TA03160	NC_011129.2	1361311	1362822	R	TA03160	complement(<1361311..>1362822)	Theileria annulata	3863519
TA03165	mRNA	TA03165	NC_011129.2	1363371	1364450	R	TA03165	complement(<1363371..>1364450)	Theileria annulata	3863520
TA20082	mRNA	TA20082	NC_011129.2	1364948	1367932	R	TA20082	complement(<1364948..>1367932)	Theileria annulata	3864462
TA20083	mRNA	TA20083	NC_011129.2	1368397	1369395	R	TA20083	complement(<1368397..>1369395)	Theileria annulata	3864463
TA20085	mRNA	TA20085	NC_011129.2	1369836	1371233	R	TA20085	complement(<1369836..>1371233)	Theileria annulata	3864464
TA20090	mRNA	TA20090	NC_011129.2	1371701	1372699	R	TA20090	complement(<1371701..>1372699)	Theileria annulata	3863830
TA20095	mRNA	TA20095	NC_011129.2	1373140	1376631	R	TA20095	complement(<1373140..>1376631)	Theileria annulata	3863831
TA20100	mRNA	TA20100	NC_011129.2	1377294	1378991	D	TA20100	join(<1377294..1377529,1377589..1377871,1377927..1377981,1378013..1378185,1378223..1378372,1378419..1378544,1378582..1378652,1378683..1378743,1378802..1378833,1378883..>1378991)	Theileria annulata	3863832
TA20105	mRNA	TA20105	NC_011129.2	1379081	1381654	R	TA20105	complement(join(<1379081..1379227,1379288..1379379,1379435..1379454,1379582..1379687,1379762..1379859,1379873..1379994,1380113..>1381654))	Theileria annulata	3863833
TA20110	mRNA	TA20110	NC_011129.2	1381792	1382746	R	TA20110	complement(join(<1381792..1381854,1381934..>1382746))	Theileria annulata	3863834
TA20115	mRNA	TA20115	NC_011129.2	1382852	1383925	R	TA20115	complement(join(<1382852..1383394,1383446..1383526,1383610..1383708,1383739..1383802,1383882..>1383925))	Theileria annulata	3863835
TA20120	mRNA	TA20120	NC_011129.2	1384847	1386139	R	TA20120	complement(join(<1384847..1384889,1384964..1385080,1385343..1385440,1385470..1385529,1385674..1385862,1385939..1386001,1386041..>1386139))	Theileria annulata	3863836
TA20125	mRNA	TA20125	NC_011129.2	1386362	1390270	R	TA20125	complement(join(<1386362..1386509,1386622..1386981,1387205..1387623,1387724..1388329,1388429..1389804,1389904..>1390270))	Theileria annulata	3863837
TA20135	mRNA	TA20135	NC_011129.2	1391541	1394229	R	TA20135	complement(join(<1391541..1392260,1392328..1393721,1393772..1394024,1394110..>1394229))	Theileria annulata	3863838
TA20140	mRNA	TA20140	NC_011129.2	1395151	1396784	D	TA20140	join(<1395151..1395334,1395436..1396037,1396117..1396395,1396425..1396494,1396529..1396662,1396695..>1396784)	Theileria annulata	3863839
TA20145	mRNA	TA20145	NC_011129.2	1397088	1398365	D	TA20145	<1397088..>1398365	Theileria annulata	3863840
TA20150	mRNA	TA20150	NC_011129.2	1398861	1400261	D	TA20150	<1398861..>1400261	Theileria annulata	3863841
TA20155	mRNA	TA20155	NC_011129.2	1403122	1403903	D	TA20155	join(<1403122..1403271,1403341..1403375,1403446..1403500,1403521..1403606,1403655..1403708,1403867..>1403903)	Theileria annulata	3863842
TA20160	mRNA	TA20160	NC_011129.2	1404482	1406589	D	TA20160	join(<1404482..1404913,1404944..1405073,1405104..1405229,1405262..>1406589)	Theileria annulata	3863843
TA20165	mRNA	TA20165	NC_011129.2	1406738	1408285	R	TA20165	complement(<1406738..>1408285)	Theileria annulata	3863844
TA20170	mRNA	TA20170	NC_011129.2	1409804	1410735	R	TA20170	complement(join(<1409804..1410184,1410259..1410369,1410401..1410514,1410546..1410628,1410669..>1410735))	Theileria annulata	3863845
TA20175	mRNA	TA20175	NC_011129.2	1411707	1418256	D	TA20175	join(<1411707..1412441,1412528..1413075,1413161..1413319,1413415..1413692,1413756..1415909,1415943..1416335,1416548..1416672,1416732..1416797,1416830..1417103,1417174..1417917,1417955..>1418256)	Theileria annulata	3863846
TA20180	mRNA	TA20180	NC_011129.2	1418582	1421393	R	TA20180	complement(join(<1418582..1419184,1419296..1419566,1419600..1420070,1420110..1420916,1420948..1421280,1421332..>1421393))	Theileria annulata	3863847
TA20185	mRNA	TA20185	NC_011129.2	1422055	1423557	R	TA20185	complement(<1422055..>1423557)	Theileria annulata	3863848
TA20190	mRNA	TA20190	NC_011129.2	1424035	1426038	D	TA20190	<1424035..>1426038	Theileria annulata	3864229
TA20195	mRNA	TA20195	NC_011129.2	1426079	1428763	R	TA20195	complement(join(<1426079..1426400,1426510..1426943,1427039..>1428763))	Theileria annulata	3864230
TA20200	mRNA	TA20200	NC_011129.2	1428987	1430143	R	TA20200	complement(join(<1428987..1429168,1429439..1429648,1429737..1430095,1430130..>1430143))	Theileria annulata	3864231
TA20205	mRNA	TA20205	NC_011129.2	1430283	1432004	R	TA20205	complement(join(<1430283..1430406,1430463..1430558,1430646..1430873,1430919..1431047,1431080..1431240,1431278..1431394,1431425..1431578,1431628..1431702,1431732..1431857,1431889..>1432004))	Theileria annulata	3864232
TA20210	mRNA	TA20210	NC_011129.2	1432313	1435691	D	TA20210	join(<1432313..1432346,1432380..1432458,1432495..1432607,1432704..1433398,1433443..1435128,1435224..>1435691)	Theileria annulata	3864233
TA20215	mRNA	TA20215	NC_011129.2	1436812	1440624	D	TA20215	join(<1436812..1436866,1436900..1440350,1440507..>1440624)	Theileria annulata	3864234
TA20220	mRNA	TA20220	NC_011129.2	1441477	1446794	D	TA20220	join(<1441477..1441509,1441605..1446511,1446635..>1446794)	Theileria annulata	3864235
TA20225	mRNA	TA20225	NC_011129.2	1446990	1447409	D	TA20225	join(<1446990..1447002,1447067..1447210,1447285..>1447409)	Theileria annulata	3864236
TA20230	mRNA	TA20230	NC_011129.2	1448726	1451867	D	TA20230	join(<1448726..1450166,1450419..1451491,1451547..>1451867)	Theileria annulata	3864237
TA20235	mRNA	TA20235	NC_011129.2	1452311	1452829	D	TA20235	<1452311..>1452829	Theileria annulata	3864238
TA20240	mRNA	TA20240	NC_011129.2	1454660	1458027	D	TA20240	join(<1454660..1454837,1454889..1454983,1455056..1455142,1455332..1455360,1455457..1455508,1455712..1455778,1455842..1455888,1456037..1456153,1456233..1456251,1456423..1456687,1456772..1456799,1456933..1456961,1457102..1457280,1457319..1457452,1457551..1457569,1457909..>1458027)	Theileria annulata	3864239
TA20245	mRNA	TA20245	NC_011129.2	1458500	1459136	R	TA20245	complement(join(<1458500..1458557,1458651..1458771,1458819..1458944,1459079..>1459136))	Theileria annulata	3864240
TA20250	mRNA	TA20250	NC_011129.2	1459309	1463611	D	TA20250	join(<1459309..1459492,1459573..1459862,1459892..1459989,1460330..1460850,1460902..1461053,1461466..1461613,1461808..1461849,1462001..1462098,1462245..1462327,1462362..1462433,1462668..1462947,1463064..1463159,1463365..1463496,1463531..>1463611)	Theileria annulata	3864241
TA20255	mRNA	TA20255	NC_011129.2	1463699	1464390	R	TA20255	complement(join(<1463699..1464024,1464135..>1464390))	Theileria annulata	3864242
TA20260	mRNA	TA20260	NC_011129.2	1465373	1468348	R	TA20260	complement(<1465373..>1468348)	Theileria annulata	3864243
TA20265	mRNA	TA20265	NC_011129.2	1469753	1470274	R	TA20265	complement(<1469753..>1470274)	Theileria annulata	3864244
TA20270	mRNA	TA20270	NC_011129.2	1471020	1471631	R	TA20270	complement(<1471020..>1471631)	Theileria annulata	3864245
TA20275	mRNA	TA20275	NC_011129.2	1472416	1472892	D	TA20275	<1472416..>1472892	Theileria annulata	3864246
TA20280	mRNA	TA20280	NC_011129.2	1473424	1474977	D	TA20280	join(<1473424..1473634,1473686..1473850,1473887..1474066,1474103..1474483,1474526..>1474977)	Theileria annulata	3864247
TA20285	mRNA	TA20285	NC_011129.2	1475079	1478967	R	TA20285	complement(join(<1475079..1475249,1475328..1475528,1475806..1475960,1476019..1476036,1476309..1477982,1478043..1478162,1478373..1478414,1478772..>1478967))	Theileria annulata	3864248
TA20290	mRNA	TA20290	NC_011129.2	1479085	1479305	D	TA20290	join(<1479085..1479129,1479168..>1479305)	Theileria annulata	3863656
TA20295	mRNA	TA20295	NC_011129.2	1480230	1480963	D	TA20295	join(<1480230..1480352,1480398..1480633,1480783..>1480963)	Theileria annulata	3863657
TA20300	mRNA	TA20300	NC_011129.2	1481505	1482947	R	TA20300	complement(join(<1481505..1482442,1482485..1482634,1482677..>1482947))	Theileria annulata	3863658
TA20305	mRNA	TA20305	NC_011129.2	1484668	1486179	D	TA20305	join(<1484668..1484748,1485004..>1486179)	Theileria annulata	3863659
TA20310	mRNA	TA20310	NC_011129.2	1487624	1490434	D	TA20310	join(<1487624..1487644,1487679..1489131,1489449..>1490434)	Theileria annulata	3863660
TA20315	mRNA	TA20315	NC_011129.2	1491401	1491985	D	TA20315	<1491401..>1491985	Theileria annulata	3863661
TA20320	mRNA	TA20320	NC_011129.2	1492470	1494095	R	TA20320	complement(<1492470..>1494095)	Theileria annulata	3863662
TA20325	mRNA	TA20325	NC_011129.2	1494758	1496176	R	TA20325	complement(<1494758..>1496176)	Theileria annulata	3863663
TA20330	mRNA	TA20330	NC_011129.2	1497309	1498919	R	TA20330	complement(<1497309..>1498919)	Theileria annulata	3863664
TA20335	mRNA	TA20335	NC_011129.2	1500436	1502768	R	TA20335	complement(join(<1500436..1501988,1502031..1502125,1502193..1502244,1502303..>1502768))	Theileria annulata	3863665
TA20340	mRNA	TA20340	NC_011129.2	1502979	1509497	D	TA20340	join(<1502979..1503065,1503154..1503301,1503574..1503686,1503946..1504498,1504835..1505715,1506082..1506138,1506335..1506572,1506913..1507119,1507318..1507377,1507487..1507733,1508063..1508192,1508264..1508494,1508725..1508967,1509210..>1509497)	Theileria annulata	3863666
TA20345	mRNA	TA20345	NC_011129.2	1509684	1510809	R	TA20345	complement(join(<1509684..1509763,1509876..1510113,1510183..1510325,1510348..1510502,1510535..1510598,1510797..>1510809))	Theileria annulata	3863667
TA20350	mRNA	TA20350	NC_011129.2	1510972	1512354	D	TA20350	<1510972..>1512354	Theileria annulata	3863668
TA20355	mRNA	TA20355	NC_011129.2	1512443	1513739	D	TA20355	join(<1512443..1512578,1512671..1512903,1513088..1513156,1513371..>1513739)	Theileria annulata	3863669
TA20360	mRNA	TA20360	NC_011129.2	1514463	1518368	R	TA20360	complement(join(<1514463..1517861,1517895..1518223,1518269..>1518368))	Theileria annulata	3863670
TA20365	mRNA	TA20365	NC_011129.2	1518657	1519364	R	TA20365	complement(join(<1518657..1518940,1518983..>1519364))	Theileria annulata	3863671
TA20370	mRNA	TA20370	NC_011129.2	1519482	1520696	D	TA20370	join(<1519482..1519944,1519990..>1520696)	Theileria annulata	3863672
TA20375	mRNA	TA20375	NC_011129.2	1521088	1521957	D	TA20375	<1521088..>1521957	Theileria annulata	3863673
TA20380	mRNA	TA20380	NC_011129.2	1522517	1523429	D	TA20380	join(<1522517..1522574,1522643..1522743,1522830..>1523429)	Theileria annulata	3863674
TA20385	mRNA	TA20385	NC_011129.2	1523672	1524708	D	TA20385	join(<1523672..1523819,1523869..1524285,1524440..>1524708)	Theileria annulata	3863488
TA20390	mRNA	TA20390	NC_011129.2	1524820	1528051	R	TA20390	complement(join(<1524820..1525910,1525956..1527918,1528043..>1528051))	Theileria annulata	3863489
TA20395	mRNA	TA20395	NC_011129.2	1528233	1529171	D	TA20395	join(<1528233..1528590,1528696..1528794,1528825..>1529171)	Theileria annulata	3863490
TA20400	mRNA	TA20400	NC_011129.2	1529277	1530219	R	TA20400	complement(join(<1529277..1529847,1529906..>1530219))	Theileria annulata	3863491
TA20405	mRNA	TA20405	NC_011129.2	1531085	1533641	D	TA20405	join(<1531085..1533244,1533324..>1533641)	Theileria annulata	3863492
TA20410	mRNA	TA20410	NC_011129.2	1533832	1534719	D	TA20410	join(<1533832..1533955,1534075..1534173,1534219..1534504,1534563..>1534719)	Theileria annulata	3863493
TA20415	mRNA	TA20415	NC_011129.2	1534756	1537754	D	TA20415	join(<1534756..1534918,1535002..1535631,1535670..1536244,1536336..>1537754)	Theileria annulata	3863494
TA20420	mRNA	TA20420	NC_011129.2	1537869	1538585	R	TA20420	complement(join(<1537869..1538144,1538205..>1538585))	Theileria annulata	3863495
TA20425	mRNA	TA20425	NC_011129.2	1539077	1539912	D	TA20425	join(<1539077..1539745,1539799..>1539912)	Theileria annulata	3863496
TA20430	mRNA	TA20430	NC_011129.2	1539972	1541023	R	TA20430	complement(join(<1539972..1540363,1540426..1540485,1540639..1540700,1540820..1540901,1540933..>1541023))	Theileria annulata	3863497
TA20435	mRNA	TA20435	NC_011129.2	1541335	1542173	R	TA20435	complement(join(<1541335..1541715,1541794..1541960,1542059..>1542173))	Theileria annulata	3863498
TA20440	mRNA	TA20440	NC_011129.2	1542891	1543750	D	TA20440	join(<1542891..1542938,1542971..1543030,1543118..>1543750)	Theileria annulata	3863499
TA20445	mRNA	TA20445	NC_011129.2	1543844	1547767	R	TA20445	complement(join(<1543844..1544905,1544940..1545158,1545257..1545385,1545469..1545558,1545589..1545676,1545707..1545796,1545894..1546045,1546075..1546169,1546230..1546601,1546670..1547002,1547082..1547425,1547486..1547570,1547722..>1547767))	Theileria annulata	3863500
TA20450	mRNA	TA20450	NC_011129.2	1548380	1548790	D	TA20450	<1548380..>1548790	Theileria annulata	3863501
TA20455	mRNA	TA20455	NC_011129.2	1549092	1550436	D	TA20455	join(<1549092..1549750,1549785..1549918,1550019..1550179,1550251..>1550436)	Theileria annulata	3863502
TA20460	mRNA	TA20460	NC_011129.2	1550552	1552833	R	TA20460	complement(join(<1550552..1550635,1550665..1550867,1550948..1551155,1551230..1551636,1551703..1551857,1551960..1552195,1552226..1552349,1552405..1552514,1552545..1552637,1552720..>1552833))	Theileria annulata	3863503
TA20465	mRNA	TA20465	NC_011129.2	1553161	1553800	D	TA20465	join(<1553161..1553302,1553411..1553596,1553631..>1553800)	Theileria annulata	3863504
TA20470	mRNA	TA20470	NC_011129.2	1553937	1556251	R	TA20470	complement(join(<1553937..1554062,1554092..>1556251))	Theileria annulata	3863505
TA20475	mRNA	TA20475	NC_011129.2	1556540	1559418	D	TA20475	join(<1556540..1556982,1557015..1557108,1557153..1557272,1557321..1557472,1557503..1557563,1557613..1557704,1557747..1557813,1557843..1558083,1558116..1558552,1558590..1558659,1558688..1558845,1558879..1559075,1559105..1559189,1559222..1559290,1559353..>1559418)	Theileria annulata	3863506
TA20480	mRNA	TA20480	NC_011129.2	1559585	1561356	D	TA20480	join(<1559585..1560151,1560195..1560545,1560625..1560930,1560990..1561112,1561177..>1561356)	Theileria annulata	3863507
TA20485	mRNA	TA20485	NC_011129.2	1561680	1562452	D	TA20485	join(<1561680..1561889,1561975..1562220,1562294..>1562452)	Theileria annulata	3864093
TA20490	mRNA	TA20490	NC_011129.2	1562526	1563164	D	TA20490	join(<1562526..1562722,1562768..1562878,1562939..>1563164)	Theileria annulata	3864094
TA20495	mRNA	TA20495	NC_011129.2	1563210	1568496	R	TA20495	complement(join(<1563210..1563634,1563700..1563848,1563890..>1568496))	Theileria annulata	3864095
TA20500	mRNA	TA20500	NC_011129.2	1569755	1570723	R	TA20500	complement(join(<1569755..1569901,1569973..1570035,1570140..1570331,1570361..1570507,1570548..1570622,1570682..>1570723))	Theileria annulata	3864096
TA20505	mRNA	TA20505	NC_011129.2	1571187	1573320	D	TA20505	join(<1571187..1571240,1571330..1571831,1571895..1571980,1572056..1572427,1572507..1572736,1572807..1572897,1572940..>1573320)	Theileria annulata	3864097
TA20510	mRNA	TA20510	NC_011129.2	1573382	1573943	R	TA20510	complement(join(<1573382..1573788,1573892..>1573943))	Theileria annulata	3864098
TA20515	mRNA	TA20515	NC_011129.2	1574261	1577672	D	TA20515	join(<1574261..1574969,1575068..1575946,1576088..1576361,1576475..>1577672)	Theileria annulata	3864099
TA20520	mRNA	TA20520	NC_011129.2	1577734	1578527	R	TA20520	complement(join(<1577734..1577982,1578035..1578195,1578229..1578309,1578371..>1578527))	Theileria annulata	3864100
TA20525	mRNA	TA20525	NC_011129.2	1578760	1579626	D	TA20525	<1578760..>1579626	Theileria annulata	3864101
TA20530	mRNA	TA20530	NC_011129.2	1579714	1580178	R	TA20530	complement(<1579714..>1580178)	Theileria annulata	3864102
TA20535	mRNA	TA20535	NC_011129.2	1580417	1583212	R	TA20535	complement(join(<1580417..1580564,1580754..1580827,1580947..1581813,1581914..1582048,1582110..1582211,1582242..1582510,1582584..1582890,1582943..1583021,1583058..>1583212))	Theileria annulata	3864103
TA20540	mRNA	TA20540	NC_011129.2	1583415	1584981	D	TA20540	join(<1583415..1584072,1584104..1584238,1584275..1584347,1584380..1584457,1584518..1584645,1584686..>1584981)	Theileria annulata	3864104
TA20545	mRNA	TA20545	NC_011129.2	1585032	1585563	R	TA20545	complement(join(<1585032..1585252,1585329..>1585563))	Theileria annulata	3864105
TA20550	mRNA	TA20550	NC_011129.2	1585772	1586432	R	TA20550	complement(join(<1585772..1586124,1586187..1586274,1586325..>1586432))	Theileria annulata	3864106
TA20555	mRNA	TA20555	NC_011129.2	1587198	1589860	R	TA20555	complement(join(<1587198..1589435,1589560..1589694,1589762..>1589860))	Theileria annulata	3864107
TA20560	mRNA	TA20560	NC_011129.2	1590974	1592554	D	TA20560	join(<1590974..1591244,1591425..1591889,1591956..1592011,1592088..1592200,1592464..>1592554)	Theileria annulata	3864108
TA20565	mRNA	TA20565	NC_011129.2	1592612	1593306	D	TA20565	join(<1592612..1592719,1592760..1592797,1592840..1592940,1593004..1593081,1593155..>1593306)	Theileria annulata	3864109
TA20570	mRNA	TA20570	NC_011129.2	1593354	1593728	D	TA20570	<1593354..>1593728	Theileria annulata	3864110
TA20575	mRNA	TA20575	NC_011129.2	1593981	1596062	R	TA20575	complement(<1593981..>1596062)	Theileria annulata	3864111
TA20580	mRNA	TA20580	NC_011129.2	1597693	1599240	D	TA20580	<1597693..>1599240	Theileria annulata	3864347
TA20585	mRNA	TA20585	NC_011129.2	1599390	1603054	R	TA20585	complement(join(<1599390..1599626,1599691..1599792,1599879..1600055,1600114..1600222,1600379..1600536,1600567..1600638,1600687..1600786,1600867..1601016,1601131..1601440,1601507..1602403,1602438..1602827,1602889..>1603054))	Theileria annulata	3864348
TA20590	mRNA	TA20590	NC_011129.2	1603699	1605680	D	TA20590	join(<1603699..1603839,1603912..1604032,1604121..1604474,1604554..>1605680)	Theileria annulata	3864349
TA20595	mRNA	TA20595	NC_011129.2	1605861	1608115	R	TA20595	complement(join(<1605861..1606225,1606324..>1608115))	Theileria annulata	3864350
TA20600	mRNA	TA20600	NC_011129.2	1608756	1610581	D	TA20600	join(<1608756..1609833,1610031..>1610581)	Theileria annulata	3864351
TA20605	mRNA	TA20605	NC_011129.2	1610691	1612382	R	TA20605	complement(join(<1610691..1610927,1611004..1612309,1612354..>1612382))	Theileria annulata	3864352
TA20610	mRNA	TA20610	NC_011129.2	1612814	1614730	R	TA20610	complement(join(<1612814..1613693,1613759..1614195,1614359..>1614730))	Theileria annulata	3864353
TA20615	mRNA	TA20615	NC_011129.2	1614983	1616455	R	TA20615	complement(<1614983..>1616455)	Theileria annulata	3864354
TA20620	mRNA	TA20620	NC_011129.2	1616534	1632411	R	TA20620	complement(join(<1616534..1616914,1616945..1617657,1617719..1623292,1623405..1629101,1629165..1629540,1629612..1631918,1631952..1632162,1632233..>1632411))	Theileria annulata	3864355
TA20625	mRNA	TA20625	NC_011129.2	1632970	1634841	D	TA20625	join(<1632970..1633022,1633096..1633125,1633290..>1634841)	Theileria annulata	3864356
TA20630	mRNA	TA20630	NC_011129.2	1634910	1637945	R	TA20630	complement(join(<1634910..1636316,1636347..1636686,1636723..1637294,1637328..>1637945))	Theileria annulata	3864357
TA20635	mRNA	TA20635	NC_011129.2	1638315	1640494	D	TA20635	join(<1638315..1638960,1639003..1639359,1639390..1639474,1639504..1639725,1639755..1639920,1639952..>1640494)	Theileria annulata	3864358
TA20640	mRNA	TA20640	NC_011129.2	1640776	1643895	D	TA20640	<1640776..>1643895	Theileria annulata	3864359
TA20645	mRNA	TA20645	NC_011129.2	1644071	1646422	R	TA20645	complement(<1644071..>1646422)	Theileria annulata	3864360
TA20650	mRNA	TA20650	NC_011129.2	1648701	1649944	D	TA20650	join(<1648701..1649507,1649579..1649767,1649807..>1649944)	Theileria annulata	3864361
TA20655	mRNA	TA20655	NC_011129.2	1650068	1650695	R	TA20655	complement(join(<1650068..1650283,1650312..1650337,1650377..1650648,1650679..>1650695))	Theileria annulata	3864362
TA20660	mRNA	TA20660	NC_011129.2	1651055	1653771	D	TA20660	join(<1651055..1652996,1653054..1653423,1653454..1653571,1653679..>1653771)	Theileria annulata	3864363
TA20665	mRNA	TA20665	NC_011129.2	1653810	1654779	D	TA20665	join(<1653810..1653885,1653920..1654199,1654230..1654332,1654364..1654465,1654495..>1654779)	Theileria annulata	3864364
TA20670	mRNA	TA20670	NC_011129.2	1654948	1655641	D	TA20670	join(<1654948..1655110,1655221..1655291,1655322..1655477,1655507..>1655641)	Theileria annulata	3864365
TA20675	mRNA	TA20675	NC_011129.2	1655726	1656588	R	TA20675	complement(join(<1655726..1655935,1656116..1656307,1656346..>1656588))	Theileria annulata	3864366
TA20680	mRNA	TA20680	NC_011129.2	1656786	1658418	R	TA20680	complement(join(<1656786..1657234,1657291..1657455,1657497..>1658418))	Theileria annulata	3863945
TA20685	mRNA	TA20685	NC_011129.2	1658762	1659110	R	TA20685	complement(join(<1658762..1658794,1658828..1658923,1658958..>1659110))	Theileria annulata	3863946
TA20690	mRNA	TA20690	NC_011129.2	1659243	1661550	R	TA20690	complement(join(<1659243..1659366,1659400..1659651,1659684..1659874,1659908..1659998,1660035..1660169,1660223..1660290,1660320..1660411,1660444..1661223,1661253..>1661550))	Theileria annulata	3863947
TA20695	mRNA	TA20695	NC_011129.2	1662177	1663376	D	TA20695	<1662177..>1663376	Theileria annulata	3863948
TA20700	mRNA	TA20700	NC_011129.2	1663831	1671728	D	TA20700	join(<1663831..1671226,1671439..>1671728)	Theileria annulata	3863949
TA20705	mRNA	TA20705	NC_011129.2	1671897	1673795	D	TA20705	<1671897..>1673795	Theileria annulata	3863950
TA20710	mRNA	TA20710	NC_011129.2	1674029	1674894	R	TA20710	complement(join(<1674029..1674424,1674523..>1674894))	Theileria annulata	3863951
TA20715	mRNA	TA20715	NC_011129.2	1675144	1677534	D	TA20715	<1675144..>1677534	Theileria annulata	3863952
TA20720	mRNA	TA20720	NC_011129.2	1677793	1678543	R	TA20720	complement(join(<1677793..1677863,1677893..1677991,1678029..1678101,1678193..>1678543))	Theileria annulata	3863953
TA20725	mRNA	TA20725	NC_011129.2	1679089	1683757	D	TA20725	join(<1679089..1679223,1679281..1679570,1679669..1679912,1680026..1683269,1683357..>1683757)	Theileria annulata	3863954
TA20730	mRNA	TA20730	NC_011129.2	1684045	1684477	D	TA20730	join(<1684045..1684290,1684334..>1684477)	Theileria annulata	3863955
TA20735	mRNA	TA20735	NC_011129.2	1684599	1686990	D	TA20735	join(<1684599..1684809,1684895..1686015,1686091..1686206,1686259..1686373,1686431..1686533,1686565..1686710,1686847..>1686990)	Theileria annulata	3863956
TA20740	mRNA	TA20740	NC_011129.2	1695726	1697608	R	TA20740	complement(join(<1695726..1697203,1697260..>1697608))	Theileria annulata	3863957
TA20745	mRNA	TA20745	NC_011129.2	1697767	1698454	D	TA20745	join(<1697767..1697853,1697911..1698196,1698225..>1698454)	Theileria annulata	3863958
TA20750	mRNA	TA20750	NC_011129.2	1698438	1699834	R	TA20750	complement(join(<1698438..1698736,1698852..1698894,1698926..1699010,1699082..1699292,1699343..1699448,1699480..1699617,1699670..1699773,1699807..>1699834))	Theileria annulata	3863959
TA20755	mRNA	TA20755	NC_011129.2	1699938	1701446	R	TA20755	complement(join(<1699938..1700093,1700126..1700167,1700197..1700260,1700379..1700530,1700560..1700612,1700645..1700738,1700771..1700815,1700846..1700909,1700941..1701017,1701054..1701134,1701167..1701229,1701282..1701365,1701414..>1701446))	Theileria annulata	3863960
TA20760	mRNA	TA20760	NC_011129.2	1701970	1702617	R	TA20760	complement(<1701970..>1702617)	Theileria annulata	3863961
TA20765	mRNA	TA20765	NC_011129.2	1702800	1703391	D	TA20765	join(<1702800..1703138,1703197..>1703391)	Theileria annulata	3863962
TA20770	mRNA	TA20770	NC_011129.2	1703509	1711455	D	TA20770	join(<1703509..1703608,1703674..1703930,1703964..1704079,1704109..1704282,1704313..1710217,1710268..>1711455)	Theileria annulata	3863963
TA20775	mRNA	TA20775	NC_011129.2	1711587	1713037	R	TA20775	complement(join(<1711587..1711686,1711722..1711930,1711964..1712192,1712232..1712445,1712478..1712613,1712653..1712804,1712842..>1713037))	Theileria annulata	3863568
TA20780	mRNA	TA20780	NC_011129.2	1713158	1714459	R	TA20780	complement(join(<1713158..1713517,1713548..1713621,1713650..1713793,1713823..1714269,1714306..1714382,1714416..>1714459))	Theileria annulata	3863569
TA20781	mRNA	TA20781	NC_011129.2	1714883	1719172	D	TA20781	<1714883..>1719172	Theileria annulata	3863570
TA20782	mRNA	TA20782	NC_011129.2	1719243	1723344	D	TA20782	join(<1719243..1719774,1719815..>1723344)	Theileria annulata	3863571
TA20783	mRNA	TA20783	NC_011129.2	1726361	1734434	D	TA20783	join(<1726361..1726991,1727027..1733561,1733693..>1734434)	Theileria annulata	3863572
TA20790	mRNA	TA20790	NC_011129.2	1735524	1737143	D	TA20790	<1735524..>1737143	Theileria annulata	3863573
TA20795	mRNA	TA20795	NC_011129.2	1737190	1740345	R	TA20795	complement(join(<1737190..1738783,1738863..1739092,1739186..1739784,1739853..>1740345))	Theileria annulata	3863574
TA20800	mRNA	TA20800	NC_011129.2	1742511	1747667	D	TA20800	join(<1742511..1743723,1743867..1744256,1744319..1744705,1744759..1747028,1747203..>1747667)	Theileria annulata	3863575
TA20805	mRNA	TA20805	NC_011129.2	1747712	1749482	D	TA20805	join(<1747712..1748017,1748115..>1749482)	Theileria annulata	3863576
TA20810	mRNA	TA20810	NC_011129.2	1749560	1750240	R	TA20810	complement(join(<1749560..1749622,1749653..1749820,1749953..1750016,1750047..>1750240))	Theileria annulata	3863577
TA20815	mRNA	TA20815	NC_011129.2	1750530	1752032	R	TA20815	complement(join(<1750530..1750817,1750969..1751495,1751642..>1752032))	Theileria annulata	3863578
TA20820	mRNA	TA20820	NC_011129.2	1752708	1753669	R	TA20820	complement(join(<1752708..1752848,1752878..1753048,1753185..1753263,1753417..1753516,1753576..>1753669))	Theileria annulata	3863579
TA20825	mRNA	TA20825	NC_011129.2	1753953	1758284	R	TA20825	complement(join(<1753953..1755512,1755603..>1758284))	Theileria annulata	3863580
TA20830	mRNA	TA20830	NC_011129.2	1758913	1762032	D	TA20830	<1758913..>1762032	Theileria annulata	3863581
TA20835	mRNA	TA20835	NC_011129.2	1762874	1765085	D	TA20835	join(<1762874..1763870,1763952..1764053,1764145..>1765085)	Theileria annulata	3863582
TA20840	mRNA	TA20840	NC_011129.2	1765352	1769421	R	TA20840	complement(join(<1765352..1765444,1765494..1765631,1765881..1766243,1766329..1766385,1766420..1766521,1766647..1766926,1766991..1767082,1767116..1767205,1767239..1767273,1767313..1767441,1767525..1767650,1767716..1768316,1768405..1768636,1768673..>1769421))	Theileria annulata	3863583
TA20845	mRNA	TA20845	NC_011129.2	1769616	1771075	D	TA20845	join(<1769616..1769967,1770150..1770317,1770347..1770396,1770489..1770555,1770587..1770679,1770743..1770868,1771011..>1771075)	Theileria annulata	3863584
TA20850	mRNA	TA20850	NC_011129.2	1771190	1771723	D	TA20850	<1771190..>1771723	Theileria annulata	3863585
TA20855	mRNA	TA20855	NC_011129.2	1772076	1773436	R	TA20855	complement(join(<1772076..1772498,1772528..1772593,1772663..1772764,1772824..1772863,1772913..1772939,1772971..1772992,1773029..1773070,1773265..>1773436))	Theileria annulata	3863586
TA20860	mRNA	TA20860	NC_011129.2	1773640	1774075	R	TA20860	complement(join(<1773640..1773822,1773908..>1774075))	Theileria annulata	3863587
TA20865	mRNA	TA20865	NC_011129.2	1774268	1775486	D	TA20865	join(<1774268..1774864,1774917..>1775486)	Theileria annulata	3863811
TA20870	mRNA	TA20870	NC_011129.2	1775618	1778395	R	TA20870	complement(<1775618..>1778395)	Theileria annulata	3863812
TA20875	mRNA	TA20875	NC_011129.2	1779255	1784849	R	TA20875	complement(join(<1779255..1779630,1779718..1779785,1779855..1779956,1779995..1781921,1781981..1782085,1782166..>1784849))	Theileria annulata	3863813
TA20880	mRNA	TA20880	NC_011129.2	1785396	1787415	D	TA20880	join(<1785396..1785605,1785645..1786567,1786607..1786716,1786747..1786891,1786947..>1787415)	Theileria annulata	3863814
TA20885	mRNA	TA20885	NC_011129.2	1787510	1791126	R	TA20885	complement(join(<1787510..1788514,1788573..1788743,1788852..1788919,1789000..1789728,1789867..1790663,1791017..>1791126))	Theileria annulata	3863815
TA20890	mRNA	TA20890	NC_011129.2	1791581	1793176	D	TA20890	join(<1791581..1792390,1792472..>1793176)	Theileria annulata	3863816
TA20895	mRNA	TA20895	NC_011129.2	1793278	1794892	D	TA20895	join(<1793278..1793334,1793367..1793460,1793550..1793657,1793690..1793725,1793827..1793987,1794028..1794422,1794559..>1794892)	Theileria annulata	3863817
TA20900	mRNA	TA20900	NC_011129.2	1794978	1795942	D	TA20900	join(<1794978..1795349,1795409..1795631,1795681..1795785,1795821..>1795942)	Theileria annulata	3863818
TA20905	mRNA	TA20905	NC_011129.2	1796100	1797102	D	TA20905	join(<1796100..1796255,1796364..1796709,1796740..1796810,1796938..>1797102)	Theileria annulata	3863819
TA20910	mRNA	TA20910	NC_011129.2	1797505	1800514	R	TA20910	complement(join(<1797505..1798925,1799014..>1800514))	Theileria annulata	3863820
TA20915	mRNA	TA20915	NC_011129.2	1800868	1804056	R	TA20915	complement(<1800868..>1804056)	Theileria annulata	3863821
TA20920	mRNA	TA20920	NC_011129.2	1804162	1805015	D	TA20920	join(<1804162..1804224,1804375..1804581,1804656..1804766,1804824..>1805015)	Theileria annulata	3863822
TA20925	mRNA	TA20925	NC_011129.2	1805252	1808387	D	TA20925	join(<1805252..1806440,1806494..1806582,1806696..1807857,1807890..1807999,1808071..1808181,1808226..>1808387)	Theileria annulata	3863823
TA20930	mRNA	TA20930	NC_011129.2	1809490	1810137	D	TA20930	<1809490..>1810137	Theileria annulata	3863824
TA20935	mRNA	TA20935	NC_011129.2	1810428	1812490	D	TA20935	join(<1810428..1810530,1810604..1810767,1810799..>1812490)	Theileria annulata	3863825
TA20940	mRNA	TA20940	NC_011129.2	1812662	1814443	D	TA20940	join(<1812662..1812943,1812987..1813444,1813504..1813804,1813885..1814239,1814328..>1814443)	Theileria annulata	3863826
TA20945	mRNA	TA20945	NC_011129.2	1814697	1816625	D	TA20945	join(<1814697..1815618,1815722..1816288,1816363..>1816625)	Theileria annulata	3863827
TA20955	mRNA	TA20955	NC_011129.2	1817361	1819401	R	TA20955	complement(join(<1817361..1817649,1817687..1817765,1817830..1817916,1817964..1818222,1818276..1818425,1818456..1819261,1819299..>1819401))	Theileria annulata	3863828
TA20960	mRNA	TA20960	NC_011129.2	1820144	1826174	D	TA20960	join(<1820144..1820208,1820304..1820947,1821017..1822306,1822398..1824734,1824817..1825038,1825100..1825317,1825434..1825473,1825527..1825735,1825769..1825861,1825902..1826033,1826064..>1826174)	Theileria annulata	3863829
TA20965	mRNA	TA20965	NC_011129.2	1826909	1828320	D	TA20965	join(<1826909..1827626,1827722..>1828320)	Theileria annulata	3863715
TA20970	mRNA	TA20970	NC_011129.2	1828962	1831127	D	TA20970	join(<1828962..1830030,1830066..1830910,1830978..>1831127)	Theileria annulata	3863716
TA20975	mRNA	TA20975	NC_011129.2	1831250	1832140	R	TA20975	complement(join(<1831250..1831312,1831342..1831478,1831570..1831896,1831937..1831964,1832084..>1832140))	Theileria annulata	3863717
TA20980	mRNA	TA20980	NC_011129.2	1832296	1835299	R	TA20980	complement(join(<1832296..1833461,1833496..>1835299))	Theileria annulata	3863718
TA20985	mRNA	TA20985	NC_011129.2	1835818	1836483	R	TA20985	complement(<1835818..>1836483)	Theileria annulata	3863719
TA20990	mRNA	TA20990	NC_011129.2	1837225	1837749	R	TA20990	complement(<1837225..>1837749)	Theileria annulata	3863720
TA20995	mRNA	TA20995	NC_011129.2	1838179	1839417	R	TA20995	complement(join(<1838179..1838283,1838351..1838638,1838679..1838747,1838777..1838833,1838887..1839028,1839142..1839260,1839325..>1839417))	Theileria annulata	3863721
TA21000	mRNA	TA21000	NC_011129.2	1839649	1840050	D	TA21000	join(<1839649..1839675,1839724..1839814,1839857..1839962,1839999..>1840050)	Theileria annulata	3863722
TA21005	mRNA	TA21005	NC_011129.2	1840114	1841707	R	TA21005	complement(join(<1840114..1840315,1840351..1840534,1840591..1840707,1840761..1840839,1840869..1841039,1841079..1841195,1841301..1841436,1841502..1841540,1841670..>1841707))	Theileria annulata	3863723
TA21010	mRNA	TA21010	NC_011129.2	1841819	1843707	R	TA21010	complement(join(<1841819..1842104,1842136..1842273,1842306..1842383,1842416..1842611,1842663..1842740,1842771..1842938,1842986..1843103,1843133..1843257,1843315..1843374,1843408..1843500,1843536..>1843707))	Theileria annulata	3863724
TA21015	mRNA	TA21015	NC_011129.2	1844263	1847498	D	TA21015	join(<1844263..1845670,1845751..>1847498)	Theileria annulata	3863725
TA21020	mRNA	TA21020	NC_011129.2	1847776	1849132	D	TA21020	join(<1847776..1847905,1847965..1848105,1848136..1848325,1848358..1848416,1848500..1848597,1848629..1848758,1848793..1849022,1849073..>1849132)	Theileria annulata	3863726
TA21025	mRNA	TA21025	NC_011129.2	1849276	1850995	D	TA21025	join(<1849276..1849401,1849434..1849526,1849592..1849672,1849731..1849851,1849881..1849955,1850004..1850303,1850336..1850450,1850494..1850601,1850634..1850676,1850728..1850847,1850915..>1850995)	Theileria annulata	3863727
TA21030	mRNA	TA21030	NC_011129.2	1851078	1852268	D	TA21030	join(<1851078..1851163,1851277..1851409,1851493..1851661,1851701..1851765,1851832..1851890,1851951..1852148,1852205..>1852268)	Theileria annulata	3863728
TA21035	mRNA	TA21035	NC_011129.2	1852375	1853093	D	TA21035	join(<1852375..1852456,1852516..1852732,1852872..1852921,1852951..>1853093)	Theileria annulata	3863729
TA21040	mRNA	TA21040	NC_011129.2	1853142	1853949	D	TA21040	join(<1853142..1853511,1853570..1853723,1853775..>1853949)	Theileria annulata	3863730
TA21045	mRNA	TA21045	NC_011129.2	1854098	1854703	R	TA21045	complement(<1854098..>1854703)	Theileria annulata	3863731
TA21050	mRNA	TA21050	NC_011129.2	1855365	1856399	R	TA21050	complement(join(<1855365..1856198,1856343..>1856399))	Theileria annulata	3863732
TA21055	mRNA	TA21055	NC_011129.2	1856788	1858199	R	TA21055	complement(join(<1856788..1856841,1856875..1857670,1857734..1857843,1857875..1857966,1858043..>1858199))	Theileria annulata	3863733
TA21060	mRNA	TA21060	NC_011129.2	1858273	1858602	D	TA21060	join(<1858273..1858281,1858322..1858370,1858403..>1858602)	Theileria annulata	3863734
TA21065	mRNA	TA21065	NC_011129.2	1858951	1859943	R	TA21065	complement(<1858951..>1859943)	Theileria annulata	3864112
TA21070	mRNA	TA21070	NC_011129.2	1860278	1862215	D	TA21070	join(<1860278..1860637,1860668..1860800,1860831..1860917,1860988..1861085,1861125..1861372,1861413..1861460,1861503..1861567,1861597..1861679,1861711..1862034,1862093..>1862215)	Theileria annulata	3864113
TA21075	mRNA	TA21075	NC_011129.2	1862614	1864064	D	TA21075	join(<1862614..1862861,1862898..1862990,1863022..1863090,1863156..1863324,1863357..1863471,1863543..1863639,1863680..>1864064)	Theileria annulata	3864114
TA21080	mRNA	TA21080	NC_011129.2	1864153	1866081	R	TA21080	complement(<1864153..>1866081)	Theileria annulata	3864115
TA21085	mRNA	TA21085	NC_011129.2	1867282	1869977	D	TA21085	join(<1867282..1867548,1867633..1868760,1868828..1869058,1869129..>1869977)	Theileria annulata	3864116
TA21090	mRNA	TA21090	NC_011129.2	1870034	1870708	R	TA21090	complement(join(<1870034..1870168,1870210..1870446,1870547..1870585,1870676..>1870708))	Theileria annulata	3864117
TA21095	mRNA	TA21095	NC_011129.2	1870870	1873006	D	TA21095	join(<1870870..1871674,1871702..1871748,1871811..1871942,1872005..1872350,1872415..1872587,1872674..1872853,1872962..>1873006)	Theileria annulata	3864118
TA21100	mRNA	TA21100	NC_011129.2	1873451	1875364	D	TA21100	<1873451..>1875364	Theileria annulata	3864119
TA21105	mRNA	TA21105	NC_011129.2	1875648	1877790	D	TA21105	join(<1875648..1875799,1875855..1876332,1876392..1876475,1876530..1876645,1876699..1876811,1876870..1876937,1876985..1877156,1877186..1877343,1877376..1877439,1877474..>1877790)	Theileria annulata	3864120
TA21110	mRNA	TA21110	NC_011129.2	1878205	1878837	D	TA21110	join(<1878205..1878273,1878305..1878590,1878677..>1878837)	Theileria annulata	3864121
TA21115	mRNA	TA21115	NC_011129.2	1879318	1879782	D	TA21115	<1879318..>1879782	Theileria annulata	3864122
TA21120	mRNA	TA21120	NC_011129.2	1879863	1881295	D	TA21120	join(<1879863..1880025,1880087..1880132,1880230..1880393,1880440..1880627,1880658..1880726,1880768..1880816,1880850..1880962,1880996..>1881295)	Theileria annulata	3864123
TA21125	mRNA	TA21125	NC_011129.2	1881317	1883036	R	TA21125	complement(join(<1881317..1881874,1881904..1882215,1882268..1882522,1882554..>1883036))	Theileria annulata	3864124
TA21130	mRNA	TA21130	NC_011129.2	1883176	1883919	R	TA21130	complement(<1883176..>1883919)	Theileria annulata	3864125
TA21135	mRNA	TA21135	NC_011129.2	1884758	1885555	D	TA21135	<1884758..>1885555	Theileria annulata	3864126
TA21140	mRNA	TA21140	NC_011129.2	1885716	1887106	D	TA21140	join(<1885716..1886339,1886372..>1887106)	Theileria annulata	3864127
TA21145	mRNA	TA21145	NC_011129.2	1887128	1888678	R	TA21145	complement(<1887128..>1888678)	Theileria annulata	3864128
TA21150	mRNA	TA21150	NC_011129.2	1888848	1890836	D	TA21150	join(<1888848..1888989,1889024..1889142,1889176..1889224,1889353..1889636,1889671..1889781,1889816..1889978,1890034..1890246,1890307..>1890836)	Theileria annulata	3864129
TA21155	mRNA	TA21155	NC_011129.2	1890853	1892367	R	TA21155	complement(join(<1890853..1891041,1891193..1891294,1891326..1891394,1891456..1891558,1891633..1891697,1891790..1891911,1891948..1892239,1892269..>1892367))	Theileria annulata	3864130
TA21160	mRNA	TA21160	NC_011129.2	1892418	1897647	R	TA21160	complement(join(<1892418..1894030,1894061..1896572,1896606..1897608,1897640..>1897647))	Theileria annulata	3863528
TA21165	mRNA	TA21165	NC_011129.2	1897802	1898510	D	TA21165	join(<1897802..1897847,1897881..1897968,1898000..1898254,1898372..>1898510)	Theileria annulata	3863529
TA21175	mRNA	TA21175	NC_011129.2	1898917	1899236	R	TA21175	complement(join(<1898917..1899044,1899110..>1899236))	Theileria annulata	3863530
TA21180	mRNA	TA21180	NC_011129.2	1899327	1901109	D	TA21180	join(<1899327..1899568,1899628..1899776,1899808..1899932,1900029..1900117,1900147..1900242,1900307..1900378,1900554..>1901109)	Theileria annulata	3863531
TA21185	mRNA	TA21185	NC_011129.2	1901239	1901822	R	TA21185	complement(join(<1901239..1901574,1901613..>1901822))	Theileria annulata	3863532
TA21190	mRNA	TA21190	NC_011129.2	1902701	1904485	R	TA21190	complement(join(<1902701..1902971,1903003..1903188,1903240..1903552,1903630..1903883,1903956..1904093,1904136..1904247,1904340..1904418,1904450..>1904485))	Theileria annulata	3863533
TA21195	mRNA	TA21195	NC_011129.2	1905256	1906521	D	TA21195	<1905256..>1906521	Theileria annulata	3863534
TA21200	mRNA	TA21200	NC_011129.2	1906554	1907112	D	TA21200	join(<1906554..1906563,1906680..1906888,1906921..>1907112)	Theileria annulata	3863535
TA21205	mRNA	TA21205	NC_011129.2	1907272	1907717	D	TA21205	join(<1907272..1907346,1907376..>1907717)	Theileria annulata	3863536
TA21210	mRNA	TA21210	NC_011129.2	1907848	1908603	R	TA21210	complement(join(<1907848..1907940,1908000..1908182,1908278..1908377,1908413..1908510,1908550..>1908603))	Theileria annulata	3863537
TA21215	mRNA	TA21215	NC_011129.2	1908950	1910172	D	TA21215	join(<1908950..1909590,1909647..1909944,1910035..>1910172)	Theileria annulata	3863538
TA21220	mRNA	TA21220	NC_011129.2	1910298	1912749	D	TA21220	join(<1910298..1910427,1910511..1910672,1910703..1910741,1910770..1910836,1910909..1911069,1911124..1911277,1911298..1911309,1911468..1911579,1911714..1912015,1912092..1912297,1912385..1912405,1912505..1912601,1912638..>1912749)	Theileria annulata	3863539
TA21225	mRNA	TA21225	NC_011129.2	1913232	1919179	D	TA21225	join(<1913232..1914165,1914275..1914439,1914469..1916193,1916289..>1919179)	Theileria annulata	3863540
TA21230	mRNA	TA21230	NC_011129.2	1919281	1920121	D	TA21230	join(<1919281..1919400,1919447..1919696,1919730..>1920121)	Theileria annulata	3863541
TA21235	mRNA	TA21235	NC_011129.2	1920325	1923738	R	TA21235	complement(<1920325..>1923738)	Theileria annulata	3863542
TA21240	mRNA	TA21240	NC_011129.2	1925852	1927551	D	TA21240	join(<1925852..1925913,1926074..1926200,1926272..1927047,1927194..>1927551)	Theileria annulata	3863543
TA21245	mRNA	TA21245	NC_011129.2	1927661	1928147	R	TA21245	complement(join(<1927661..1927784,1927894..>1928147))	Theileria annulata	3863544
TA21250	mRNA	TA21250	NC_011129.2	1928453	1928900	R	TA21250	complement(join(<1928453..1928576,1928656..>1928900))	Theileria annulata	3863545
TA21255	mRNA	TA21255	NC_011129.2	1929167	1931270	R	TA21255	complement(join(<1929167..1929470,1929520..>1931270))	Theileria annulata	3863546
TA21260	mRNA	TA21260	NC_011129.2	1931917	1932561	D	TA21260	join(<1931917..1932125,1932156..1932216,1932293..1932359,1932408..1932469,1932505..>1932561)	Theileria annulata	3863547
TA21265	mRNA	TA21265	NC_011129.2	1932824	1934932	D	TA21265	join(<1932824..1932840,1932866..1933276,1933308..1933394,1933472..1933711,1933763..1934034,1934097..1934223,1934274..1934376,1934409..1934522,1934573..>1934932)	Theileria annulata	3863735
TA21270	mRNA	TA21270	NC_011129.2	1935387	1936130	D	TA21270	<1935387..>1936130	Theileria annulata	3863736
TA21275	mRNA	TA21275	NC_011129.2	1936227	1939267	R	TA21275	complement(join(<1936227..1936511,1936834..1937109,1937144..1937302,1937332..1937450,1937510..1937557,1937589..1937754,1937786..1937906,1937940..1938050,1938081..1938148,1938211..1938291,1938326..1938407,1938448..1938566,1938604..1938696,1938758..1938860,1938892..1939089,1939167..>1939267))	Theileria annulata	3863737
TA21280	mRNA	TA21280	NC_011129.2	1939402	1940571	D	TA21280	<1939402..>1940571	Theileria annulata	3863738
TA21285	mRNA	TA21285	NC_011129.2	1940620	1942187	R	TA21285	complement(join(<1940620..1940652,1940683..1940794,1940872..1940984,1941052..1941129,1941160..1941237,1941328..1941528,1941629..1941718,1942111..1942143,1942176..>1942187))	Theileria annulata	3863739
TA21290	mRNA	TA21290	NC_011129.2	1943871	1944296	D	TA21290	<1943871..>1944296	Theileria annulata	3863740
TA21295	mRNA	TA21295	NC_011129.2	1944597	1945879	R	TA21295	complement(join(<1944597..1944831,1944880..1944965,1945044..1945239,1945305..1945444,1945607..>1945879))	Theileria annulata	3863741
TA21300	mRNA	TA21300	NC_011129.2	1945969	1946739	D	TA21300	<1945969..>1946739	Theileria annulata	3863742
TA21305	mRNA	TA21305	NC_011129.2	1946883	1947666	R	TA21305	complement(join(<1946883..1946904,1946935..1947001,1947054..1947135,1947169..1947253,1947328..1947479,1947532..>1947666))	Theileria annulata	3863743
TA21310	mRNA	TA21310	NC_011129.2	1947737	1952412	R	TA21310	complement(join(<1947737..1948520,1948589..1949650,1949756..>1952412))	Theileria annulata	3863744
TA21315	mRNA	TA21315	NC_011129.2	1952384	1952992	D	TA21315	join(<1952384..1952400,1952623..>1952992)	Theileria annulata	3863745
TA21320	mRNA	TA21320	NC_011129.2	1953425	1953955	R	TA21320	complement(join(<1953425..1953706,1953781..1953813,1953941..>1953955))	Theileria annulata	3863746
TA21325	mRNA	TA21325	NC_011129.2	1954149	1957084	R	TA21325	complement(join(<1954149..1954517,1954697..1954920,1955018..1955124,1955207..1955517,1955604..1955777,1955846..1956444,1956512..1956575,1956632..>1957084))	Theileria annulata	3863747
TA21330	mRNA	TA21330	NC_011129.2	1957232	1959162	D	TA21330	join(<1957232..1957281,1957439..1957481,1957516..1957605,1957758..1957949,1958018..1958188,1958324..1958605,1958706..1958858,1958940..1959074,1959136..>1959162)	Theileria annulata	3863748
TA21335	mRNA	TA21335	NC_011129.2	1959327	1960677	D	TA21335	join(<1959327..1959644,1959738..1959825,1959914..1960089,1960187..1960333,1960420..1960523,1960569..>1960677)	Theileria annulata	3863749
TA21340	mRNA	TA21340	NC_011129.2	1960829	1962932	D	TA21340	join(<1960829..1961012,1961047..1961327,1961364..1961451,1961486..1961552,1961602..1961711,1961778..1961881,1961911..1962255,1962334..1962514,1962544..>1962932)	Theileria annulata	3863750
TA21345	mRNA	TA21345	NC_011129.2	1963025	1963423	R	TA21345	complement(<1963025..>1963423)	Theileria annulata	3863751
TA21350	mRNA	TA21350	NC_011129.2	1963740	1967323	R	TA21350	complement(join(<1963740..1963796,1963848..1963948,1963982..1964236,1964313..1964360,1964435..1964764,1964837..1965514,1965610..1965674,1965705..1965862,1965892..1965978,1966027..1966248,1966336..1966516,1966559..1966796,1966845..1966980,1967050..1967222,1967287..>1967323))	Theileria annulata	3863752
TA21355	mRNA	TA21355	NC_011129.2	1967929	1968858	D	TA21355	<1967929..>1968858	Theileria annulata	3863753
TA21360	mRNA	TA21360	NC_011129.2	1969342	1969581	D	TA21360	<1969342..>1969581	Theileria annulata	3863430
TA21365	mRNA	TA21365	NC_011129.2	1969699	1971190	R	TA21365	complement(join(<1969699..1969809,1969850..1969955,1970024..1970165,1970219..1970326,1970361..1970552,1970622..1970811,1970951..>1971190))	Theileria annulata	3863431
TA21370	mRNA	TA21370	NC_011129.2	1971560	1972849	D	TA21370	join(<1971560..1971631,1971697..1971830,1971941..1972082,1972175..>1972849)	Theileria annulata	3863432
TA21375	mRNA	TA21375	NC_011129.2	1973142	1974528	R	TA21375	complement(join(<1973142..1974190,1974234..>1974528))	Theileria annulata	3863433
TA21380	mRNA	TA21380	NC_011129.2	1974993	1976321	R	TA21380	complement(join(<1974993..1975975,1976087..>1976321))	Theileria annulata	3863434
TA21385	mRNA	TA21385	NC_011129.2	1976843	1978027	D	TA21385	<1976843..>1978027	Theileria annulata	3863435
TA21390	mRNA	TA21390	NC_011129.2	1978460	1980313	D	TA21390	<1978460..>1980313	Theileria annulata	3863436
TA21395	mRNA	TA21395	NC_011129.2	1980276	1981076	R	TA21395	complement(join(<1980276..1980924,1980934..>1981076))	Theileria annulata	3863437
TA21400	mRNA	TA21400	NC_011129.2	1981122	1981511	R	TA21400	complement(<1981122..>1981511)	Theileria annulata	3863438
TA21405	mRNA	TA21405	NC_011129.2	1981577	1983354	R	TA21405	complement(join(<1981577..1981705,1981750..1981862,1981932..1982153,1982221..1982347,1982380..1982444,1982476..1982532,1982620..1982836,1982893..1982997,1983130..>1983354))	Theileria annulata	3863439
TA21410	mRNA	TA21410	NC_011129.2	1983694	1987349	D	TA21410	join(<1983694..1984501,1984564..1986089,1986159..1986254,1986349..1986435,1986465..1986527,1986557..1986688,1986720..1986802,1987024..1987077,1987238..>1987349)	Theileria annulata	3863440
TA21415	mRNA	TA21415	NC_011129.2	1987525	1991825	R	TA21415	complement(join(<1987525..1989990,1990081..1990561,1990620..1990708,1990766..1990931,1991009..1991160,1991246..1991472,1991507..>1991825))	Theileria annulata	3863441
TA21420	mRNA	TA21420	NC_011129.2	1992135	1993089	D	TA21420	join(<1992135..1992249,1992267..1992331,1992389..1992700,1992785..1992868,1992901..>1993089)	Theileria annulata	3863442
TA21425	mRNA	TA21425	NC_011129.2	1993216	1995288	R	TA21425	complement(join(<1993216..1993457,1993575..1993660,1993692..1993958,1994047..1994132,1994163..1994356,1994453..1994538,1994570..1994724,1994753..1995103,1995202..>1995288))	Theileria annulata	3863443
TA21430	mRNA	TA21430	NC_011129.2	1995762	2000412	D	TA21430	join(<1995762..1997484,1997570..1997790,1997873..1998546,1998651..1999116,1999251..1999462,1999608..1999869,1999900..1999991,2000024..2000091,2000165..2000250,2000278..>2000412)	Theileria annulata	3863444
TA21435	mRNA	TA21435	NC_011129.2	2000871	2003808	D	TA21435	join(<2000871..2001629,2001717..2002057,2002111..2003043,2003126..2003283,2003354..2003432,2003513..2003698,2003733..>2003808)	Theileria annulata	3863445
TA21440	mRNA	TA21440	NC_011129.2	2003862	2004265	R	TA21440	complement(join(<2003862..2004050,2004086..>2004265))	Theileria annulata	3863446
TA21445	mRNA	TA21445	NC_011129.2	2004430	2005671	R	TA21445	complement(join(<2004430..2004708,2004740..2005005,2005076..2005501,2005542..>2005671))	Theileria annulata	3863447
TA21450	mRNA	TA21450	NC_011129.2	2005983	2008894	D	TA21450	join(<2005983..2006289,2006334..2006429,2006459..2006616,2006647..2006772,2006825..2006982,2007012..2007107,2007142..2007206,2007236..2007517,2007548..2007606,2007648..2007833,2007872..2008060,2008092..2008252,2008294..>2008894)	Theileria annulata	3863448
TA21455	mRNA	TA21455	NC_011129.2	2008931	2009859	R	TA21455	complement(join(<2008931..2009186,2009220..2009340,2009382..>2009859))	Theileria annulata	3863449
TA21460	mRNA	TA21460	NC_011129.2	2010107	2010740	R	TA21460	complement(join(<2010107..2010470,2010509..2010572,2010647..>2010740))	Theileria annulata	3863926
TA21465	mRNA	TA21465	NC_011129.2	2011250	2012647	D	TA21465	join(<2011250..2011951,2011984..2012441,2012472..2012529,2012561..>2012647)	Theileria annulata	3863927
TA21470	mRNA	TA21470	NC_011129.2	2012709	2015634	D	TA21470	join(<2012709..2014402,2014476..2014549,2014581..2014678,2014735..>2015634)	Theileria annulata	3863928
TA21475	mRNA	TA21475	NC_011129.2	2015689	2016497	R	TA21475	complement(join(<2015689..2015775,2015848..2015937,2015967..2016050,2016080..2016202,2016234..>2016497))	Theileria annulata	3863929
TA21480	mRNA	TA21480	NC_011129.2	2016705	2018664	D	TA21480	join(<2016705..2017282,2017312..2018008,2018038..>2018664)	Theileria annulata	3863930
TA21485	mRNA	TA21485	NC_011129.2	2018758	2019374	D	TA21485	join(<2018758..2018946,2018988..2019247,2019284..>2019374)	Theileria annulata	3863931
TA21490	mRNA	TA21490	NC_011129.2	2019677	2021076	D	TA21490	join(<2019677..2019801,2019836..2019892,2019924..2020006,2020039..2020124,2020157..2020215,2020309..2020502,2020541..2020601,2020633..2020743,2020773..>2021076)	Theileria annulata	3863932
TA21495	mRNA	TA21495	NC_011129.2	2021206	2021606	D	TA21495	join(<2021206..2021296,2021344..>2021606)	Theileria annulata	3863933
TA21500	mRNA	TA21500	NC_011129.2	2021796	2022277	D	TA21500	join(<2021796..2021835,2021880..2021950,2021982..2022106,2022138..2022198,2022227..>2022277)	Theileria annulata	3863934
TA21505	mRNA	TA21505	NC_011129.2	2022283	2024390	R	TA21505	complement(join(<2022283..2023562,2023594..2024211,2024246..>2024390))	Theileria annulata	3863935
TA21510	mRNA	TA21510	NC_011129.2	2026512	2033729	R	TA21510	complement(<2026512..>2033729)	Theileria annulata	3863936
TA21515	mRNA	TA21515	NC_011129.2	2035828	2043045	D	TA21515	<2035828..>2043045	Theileria annulata	3863937
TA19700	mRNA	TA19700	NC_011129.2	2044234	2046184	D	TA19700	join(<2044234..2044861,2044891..2045675,2045705..>2046184)	Theileria annulata	3863866
TA19695	mRNA	TA19695	NC_011129.2	2047039	2055042	D	TA19695	<2047039..>2055042	Theileria annulata	3863865
TA19690	mRNA	TA19690	NC_011129.2	2055243	2056912	R	TA19690	complement(join(<2055243..2055418,2055468..2055530,2055560..2055644,2055719..2055846,2055899..2056121,2056152..2056450,2056482..2056670,2056702..>2056912))	Theileria annulata	3863864
TA19685	mRNA	TA19685	NC_011129.2	2057553	2058293	D	TA19685	<2057553..>2058293	Theileria annulata	3863863
TA19680	mRNA	TA19680	NC_011129.2	2058405	2064330	R	TA19680	complement(join(<2058405..2063484,2063513..>2064330))	Theileria annulata	3863862
TA19675	mRNA	TA19675	NC_011129.2	2065652	2067055	D	TA19675	join(<2065652..2066614,2066657..>2067055)	Theileria annulata	3863861
TA19665	mRNA	TA19665	NC_011129.2	2068135	2076450	D	TA19665	<2068135..>2076450	Theileria annulata	3863859
TA19660	mRNA	TA19660	NC_011129.2	2077383	2084795	D	TA19660	<2077383..>2084795	Theileria annulata	3863858
TA19655	mRNA	TA19655	NC_011129.2	2085551	2086163	D	TA19655	join(<2085551..2085564,2085699..2085918,2085950..2086033,2086065..>2086163)	Theileria annulata	3863857
TA19650	mRNA	TA19650	NC_011129.2	2086423	2089165	R	TA19650	complement(join(<2086423..2086545,2086583..2086782,2086860..2086955,2087024..2087136,2087256..2087283,2087330..2087364,2087462..2087521,2087802..2087910,2087944..2087990,2088029..2088129,2088169..2088236,2088268..2088590,2088808..2088847,2088883..2089004,2089083..>2089165))	Theileria annulata	3863856
TA19645	mRNA	TA19645	NC_011129.2	2089753	2092099	D	TA19645	join(<2089753..2090509,2090553..2090605,2090685..2090862,2090897..2090961,2091035..2091133,2091181..2091712,2091802..2091901,2091931..>2092099)	Theileria annulata	3863855
TA19640	mRNA	TA19640	NC_011129.2	2092215	2094130	D	TA19640	join(<2092215..2092529,2092773..2092854,2092884..2093462,2093497..2093897,2093930..>2094130)	Theileria annulata	3863854
TA19635	mRNA	TA19635	NC_011129.2	2094187	2095607	R	TA19635	complement(join(<2094187..2094501,2094554..2094628,2094687..2094707,2094739..2095037,2095103..2095132,2095164..2095301,2095335..2095430,2095496..>2095607))	Theileria annulata	3863853
TA19630	mRNA	TA19630	NC_011129.2	2095818	2097163	D	TA19630	join(<2095818..2095997,2096029..2096098,2096132..2096236,2096293..2097026,2097089..>2097163)	Theileria annulata	3863852
TA19625	mRNA	TA19625	NC_011129.2	2097305	2098431	D	TA19625	join(<2097305..2097660,2097681..2097850,2097903..2097988,2098021..2098100,2098131..>2098431)	Theileria annulata	3863851
TA19620	mRNA	TA19620	NC_011129.2	2098716	2101055	D	TA19620	join(<2098716..2099044,2099094..2099281,2099336..2099409,2099460..2099619,2099651..2099744,2099775..2099931,2100033..2100161,2100195..2100314,2100392..2100791,2100895..>2101055)	Theileria annulata	3863850
TA19610	mRNA	TA19610	NC_011129.2	2101219	2103110	D	TA19610	join(<2101219..2101333,2101387..2101503,2101570..>2103110)	Theileria annulata	3864053
TA19605	mRNA	TA19605	NC_011129.2	2103152	2104496	R	TA19605	complement(join(<2103152..2103672,2103758..>2104496))	Theileria annulata	3864052
TA19600	mRNA	TA19600	NC_011129.2	2104931	2105820	D	TA19600	join(<2104931..2105173,2105267..2105358,2105412..2105658,2105716..>2105820)	Theileria annulata	3864051
TA19595	mRNA	TA19595	NC_011129.2	2105937	2110596	R	TA19595	complement(join(<2105937..2106388,2106474..2110167,2110237..>2110596))	Theileria annulata	3864050
TA19590	mRNA	TA19590	NC_011129.2	2110777	2113973	R	TA19590	complement(join(<2110777..2111034,2111064..2111140,2111196..2111847,2111910..2112017,2112051..2112152,2112225..2112353,2112406..2112770,2112832..2112939,2112971..2113680,2113708..>2113973))	Theileria annulata	3864049
TA19585	mRNA	TA19585	NC_011129.2	2114800	2116893	D	TA19585	join(<2114800..2114899,2114983..2115125,2115188..2115346,2115401..2115493,2115558..2115974,2116048..2116200,2116233..2116459,2116590..>2116893)	Theileria annulata	3864048
TA19580	mRNA	TA19580	NC_011129.2	2117005	2118584	R	TA19580	complement(join(<2117005..2117344,2117445..2118153,2118262..2118326,2118378..2118471,2118515..>2118584))	Theileria annulata	3864047
TA19575	mRNA	TA19575	NC_011129.2	2118880	2120700	R	TA19575	complement(<2118880..>2120700)	Theileria annulata	3864046
TA19570	mRNA	TA19570	NC_011129.2	2121285	2122315	R	TA19570	complement(join(<2121285..2121782,2121827..2121978,2122051..2122149,2122186..>2122315))	Theileria annulata	3864045
TA19565	mRNA	TA19565	NC_011129.2	2122466	2123586	R	TA19565	complement(join(<2122466..2122571,2122638..2122841,2122906..2123066,2123101..2123230,2123294..>2123586))	Theileria annulata	3864044
TA19550	mRNA	TA19550	NC_011129.2	2123999	2126071	R	TA19550	complement(<2123999..>2126071)	Theileria annulata	3864041
TA19545	mRNA	TA19545	NC_011129.2	2126987	2130514	D	TA19545	join(<2126987..2129023,2129219..>2130514)	Theileria annulata	3864040
TA19540	mRNA	TA19540	NC_011129.2	2130790	2131086	D	TA19540	<2130790..>2131086	Theileria annulata	3864039
TA19535	mRNA	TA19535	NC_011129.2	2131200	2131900	R	TA19535	complement(join(<2131200..2131323,2131483..2131634,2131739..>2131900))	Theileria annulata	3864038
TA19530	mRNA	TA19530	NC_011129.2	2131950	2133331	R	TA19530	complement(join(<2131950..2132058,2132113..2132548,2132694..2132804,2133008..2133121,2133155..2133248,2133275..>2133331))	Theileria annulata	3864037
TA19525	mRNA	TA19525	NC_011129.2	2133871	2135678	D	TA19525	join(<2133871..2133981,2134015..2134140,2134217..2134319,2134434..2134597,2134629..2134704,2134729..2134838,2134907..2135136,2135170..2135563,2135598..>2135678)	Theileria annulata	3864036
TA19520	mRNA	TA19520	NC_011129.2	2136895	2138978	D	TA19520	join(<2136895..2138143,2138343..2138603,2138716..>2138978)	Theileria annulata	3864035
TA19515	mRNA	TA19515	NC_011129.2	2139398	2153057	R	TA19515	complement(join(<2139398..2146339,2146436..2151691,2151774..2151896,2152059..2152753,2152787..2152874,2152905..>2153057))	Theileria annulata	3863655
TA19510	mRNA	TA19510	NC_011129.2	2154314	2155005	D	TA19510	join(<2154314..2154487,2154542..2154656,2154695..2154772,2154835..2154878,2154913..>2155005)	Theileria annulata	3863654
TA19505	mRNA	TA19505	NC_011129.2	2155088	2156781	D	TA19505	join(<2155088..2155135,2155245..2155339,2155461..2155535,2155612..2155763,2155830..2155951,2155981..2156073,2156109..2156513,2156749..>2156781)	Theileria annulata	3863653
TA19500	mRNA	TA19500	NC_011129.2	2157124	2157765	D	TA19500	join(<2157124..2157372,2157487..>2157765)	Theileria annulata	3863652
TA19495	mRNA	TA19495	NC_011129.2	2158057	2158720	D	TA19495	join(<2158057..2158201,2158226..2158473,2158535..>2158720)	Theileria annulata	3863651
TA19485	mRNA	TA19485	NC_011129.2	2158917	2160971	R	TA19485	complement(join(<2158917..2159073,2159108..2159145,2159234..2159302,2159339..2159524,2159564..2159662,2159691..2159795,2159826..2159882,2159913..2160013,2160043..2160238,2160271..2160366,2160397..2160563,2160617..>2160971))	Theileria annulata	3863650
TA19480	mRNA	TA19480	NC_011129.2	2161482	2163174	D	TA19480	join(<2161482..2161546,2161614..2161779,2161810..2162097,2162127..2162213,2162253..2162301,2162335..2162462,2162493..2162570,2162600..2162665,2162698..>2163174)	Theileria annulata	3863649
TA19475	mRNA	TA19475	NC_011129.2	2163866	2165315	R	TA19475	complement(join(<2163866..2164694,2164729..2165099,2165202..>2165315))	Theileria annulata	3863648
TA19470	mRNA	TA19470	NC_011129.2	2165344	2168591	R	TA19470	complement(join(<2165344..2165467,2165498..2165649,2165727..2166410,2166478..2166658,2166688..2166845,2166878..2167021,2167051..2167869,2167900..2168122,2168154..2168292,2168348..>2168591))	Theileria annulata	3863647
TA19465	mRNA	TA19465	NC_011129.2	2168992	2172291	R	TA19465	complement(join(<2168992..2169890,2169921..2170044,2170076..2170161,2170191..2170277,2170311..2171958,2172019..2172165,2172250..>2172291))	Theileria annulata	3863646
TA19460	mRNA	TA19460	NC_011129.2	2172434	2175501	R	TA19460	complement(join(<2172434..2172597,2172632..2172909,2172917..2173029,2173071..2173258,2173301..2173373,2173405..2173551,2173588..2173668,2173699..>2175501))	Theileria annulata	3863645
TA19455	mRNA	TA19455	NC_011129.2	2175794	2176727	R	TA19455	complement(join(<2175794..2176585,2176659..>2176727))	Theileria annulata	3863644
TA19440	mRNA	TA19440	NC_011129.2	2177003	2180196	D	TA19440	join(<2177003..2177129,2177191..2177605,2177699..2179790,2179864..>2180196)	Theileria annulata	3863641
TA19435	mRNA	TA19435	NC_011129.2	2180348	2182629	D	TA19435	join(<2180348..2180439,2180470..2181161,2181196..2181377,2181419..2181466,2181498..2181990,2182026..2182507,2182546..>2182629)	Theileria annulata	3863640
TA19430	mRNA	TA19430	NC_011129.2	2182834	2183840	D	TA19430	join(<2182834..2183022,2183057..2183299,2183329..2183391,2183444..2183530,2183560..2183746,2183776..>2183840)	Theileria annulata	3863639
TA19425	mRNA	TA19425	NC_011129.2	2183934	2186015	R	TA19425	complement(join(<2183934..2184077,2184108..2184232,2184272..>2186015))	Theileria annulata	3863638
TA19420	mRNA	TA19420	NC_011129.2	2186771	2187649	D	TA19420	join(<2186771..2186915,2186946..2187092,2187124..2187214,2187245..2187344,2187410..2187508,2187518..>2187649)	Theileria annulata	3863637
TA19415	mRNA	TA19415	NC_011129.2	2187697	2188273	R	TA19415	complement(join(<2187697..2187948,2187968..>2188273))	Theileria annulata	3863636
TA19410	mRNA	TA19410	NC_011129.2	2188586	2189896	D	TA19410	join(<2188586..2188957,2188989..2189247,2189277..2189482,2189515..2189602,2189643..>2189896)	Theileria annulata	3864503
TA19405	mRNA	TA19405	NC_011129.2	2190081	2192061	R	TA19405	complement(join(<2190081..2190239,2190331..2190432,2190463..2190531,2190590..2190631,2190663..2190782,2190887..2190931,2190965..2191174,2191202..2191293,2191323..2191626,2191657..2191846,2191880..>2192061))	Theileria annulata	3864502
TA19400	mRNA	TA19400	NC_011129.2	2192315	2194351	R	TA19400	complement(join(<2192315..2192413,2192452..2192694,2192724..2192896,2193028..2193111,2193142..2193199,2193229..2193324,2193356..2193454,2193555..2193739,2193770..2193998,2194030..2194240,2194320..>2194351))	Theileria annulata	3864501
TA19395	mRNA	TA19395	NC_011129.2	2194790	2195914	D	TA19395	join(<2194790..2194960,2194994..2195086,2195134..2195209,2195248..2195477,2195509..2195610,2195642..>2195914)	Theileria annulata	3864500
TA19385	mRNA	TA19385	NC_011129.2	2195955	2196398	R	TA19385	complement(<2195955..>2196398)	Theileria annulata	3864498
TA19380	mRNA	TA19380	NC_011129.2	2197005	2197604	D	TA19380	<2197005..>2197604	Theileria annulata	3864497
TA19375	mRNA	TA19375	NC_011129.2	2197671	2198175	D	TA19375	join(<2197671..2197782,2197838..>2198175)	Theileria annulata	3864496
TA19370	mRNA	TA19370	NC_011129.2	2198288	2199299	D	TA19370	join(<2198288..2198311,2198372..2198416,2198486..2198584,2198614..2198706,2198736..2198777,2198822..2198967,2199032..2199161,2199240..>2199299)	Theileria annulata	3864495
TA19365	mRNA	TA19365	NC_011129.2	2199619	2201124	R	TA19365	complement(join(<2199619..2200878,2200915..2200994,2201028..>2201124))	Theileria annulata	3864494
TA19360	mRNA	TA19360	NC_011129.2	2201632	2203407	D	TA19360	join(<2201632..2202603,2202633..2202781,2202812..2203042,2203137..>2203407)	Theileria annulata	3864493
TA19355	mRNA	TA19355	NC_011129.2	2203791	2205407	D	TA19355	<2203791..>2205407	Theileria annulata	3864492
TA19350	mRNA	TA19350	NC_011129.2	2205660	2207202	D	TA19350	join(<2205660..2205890,2205923..2205967,2205998..2206255,2206284..2206509,2206541..2206741,2206774..2206902,2206932..2207016,2207046..>2207202)	Theileria annulata	3864491
TA19345	mRNA	TA19345	NC_011129.2	2207480	2208375	D	TA19345	join(<2207480..2207929,2208040..>2208375)	Theileria annulata	3864490
TA19340	mRNA	TA19340	NC_011129.2	2208675	2209484	D	TA19340	join(<2208675..2208767,2208801..2209141,2209256..>2209484)	Theileria annulata	3864489
TA19325	mRNA	TA19325	NC_011129.2	2210314	2211430	D	TA19325	join(<2210314..2210440,2210511..2210708,2210742..>2211430)	Theileria annulata	3864487
TA19320	mRNA	TA19320	NC_011129.2	2211506	2212551	D	TA19320	join(<2211506..2211614,2211827..>2212551)	Theileria annulata	3864486
TA19315	mRNA	TA19315	NC_011129.2	2212708	2213441	R	TA19315	complement(join(<2212708..2213019,2213115..>2213441))	Theileria annulata	3864485
TA19310	mRNA	TA19310	NC_011129.2	2213941	2217134	D	TA19310	join(<2213941..2214052,2214174..2214911,2215045..2215207,2215274..2215357,2215398..2215524,2215591..2215725,2215847..2216122,2216152..2216344,2216525..2216582,2216614..2216754,2216888..>2217134)	Theileria annulata	3864484
TA19305	mRNA	TA19305	NC_011129.2	2217345	2222103	D	TA19305	join(<2217345..2217377,2217411..2217653,2217826..2220097,2220184..2220714,2220837..2220961,2221115..2221227,2221347..2221676,2221911..>2222103)	Theileria annulata	3864483
TA19300	mRNA	TA19300	NC_011129.2	2222452	2223084	D	TA19300	<2222452..>2223084	Theileria annulata	3864482
TA19295	mRNA	TA19295	NC_011129.2	2223284	2224742	R	TA19295	complement(join(<2223284..2223354,2223384..2223483,2223588..2223677,2223730..2223792,2223857..2223925,2224013..2224040,2224091..2224197,2224296..2224337,2224519..2224576,2224666..>2224742))	Theileria annulata	3864481
TA19290	mRNA	TA19290	NC_011129.2	2224793	2225978	D	TA19290	join(<2224793..2224845,2224959..2225026,2225207..2225311,2225524..>2225978)	Theileria annulata	3864480
TA19285	mRNA	TA19285	NC_011129.2	2226087	2226791	D	TA19285	<2226087..>2226791	Theileria annulata	3864479
TA19275	mRNA	TA19275	NC_011129.2	2226919	2229303	R	TA19275	complement(<2226919..>2229303)	Theileria annulata	3864477
TA19270	mRNA	TA19270	NC_011129.2	2229928	2230713	R	TA19270	complement(<2229928..>2230713)	Theileria annulata	3864476
TA19265	mRNA	TA19265	NC_011129.2	2230906	2232103	R	TA19265	complement(join(<2230906..2230986,2231100..2231258,2231326..2231529,2231721..2231834,2231906..>2232103))	Theileria annulata	3864475
TA19255	mRNA	TA19255	NC_011129.2	2233016	2233611	R	TA19255	complement(join(<2233016..2233242,2233324..2233396,2233456..>2233611))	Theileria annulata	3864474
TA19250	mRNA	TA19250	NC_011129.2	2233797	2234664	D	TA19250	join(<2233797..2233900,2233957..2234060,2234217..2234346,2234550..>2234664)	Theileria annulata	3864473
TA19245	mRNA	TA19245	NC_011129.2	2234911	2235516	R	TA19245	complement(join(<2234911..2235065,2235176..2235197,2235229..2235320,2235387..>2235516))	Theileria annulata	3864472
TA19240	mRNA	TA19240	NC_011129.2	2235657	2236942	D	TA19240	join(<2235657..2236501,2236573..>2236942)	Theileria annulata	3864471
TA19235	mRNA	TA19235	NC_011129.2	2237020	2241345	R	TA19235	complement(join(<2237020..2237121,2237170..2237257,2237351..2239692,2239807..2240282,2240357..2240444,2240599..2240899,2241023..>2241345))	Theileria annulata	3864470
TA19230	mRNA	TA19230	NC_011129.2	2241573	2242015	D	TA19230	join(<2241573..2241751,2241853..>2242015)	Theileria annulata	3864469
TA19225	mRNA	TA19225	NC_011129.2	2242166	2244330	D	TA19225	join(<2242166..2242495,2242639..2242760,2242809..>2244330)	Theileria annulata	3864468
TA19220	mRNA	TA19220	NC_011129.2	2244495	2247450	D	TA19220	join(<2244495..2244557,2244638..2244775,2244892..2245031,2245140..2245461,2245536..2245655,2245819..2246192,2246232..2246447,2246604..2247236,2247348..>2247450)	Theileria annulata	3864467
TA19215	mRNA	TA19215	NC_011129.2	2247489	2249520	R	TA19215	complement(join(<2247489..2247608,2247795..2249066,2249215..2249232,2249311..>2249520))	Theileria annulata	3864466
TA19210	mRNA	TA19210	NC_011129.2	2249803	2254529	D	TA19210	join(<2249803..2249901,2249967..2249984,2250172..2250223,2250439..2250615,2250760..2250945,2251017..2251307,2251443..2251520,2251589..2252421,2252495..2253322,2253417..2253701,2253798..2253995,2254135..2254243,2254342..>2254529)	Theileria annulata	3864465
TA19205	mRNA	TA19205	NC_011129.2	2254679	2255243	R	TA19205	complement(join(<2254679..2254800,2254831..2254918,2255064..>2255243))	Theileria annulata	3863791
TA19200	mRNA	TA19200	NC_011129.2	2255389	2256312	R	TA19200	complement(join(<2255389..2255450,2255491..2255534,2255584..2255692,2255735..2255774,2255828..2255920,2255951..2256001,2256096..2256157,2256189..2256253,2256275..>2256312))	Theileria annulata	3863790
TA19195	mRNA	TA19195	NC_011129.2	2256544	2258445	R	TA19195	complement(join(<2256544..2256719,2256791..2257468,2257511..2258251,2258286..>2258445))	Theileria annulata	3863789
TA19190	mRNA	TA19190	NC_011129.2	2258656	2260440	D	TA19190	<2258656..>2260440	Theileria annulata	3863788
TA19185	mRNA	TA19185	NC_011129.2	2260513	2261270	R	TA19185	complement(join(<2260513..2260584,2260631..2260768,2260798..2260836,2260868..2260889,2260974..2261068,2261131..2261206,2261230..>2261270))	Theileria annulata	3863787
TA19180	mRNA	TA19180	NC_011129.2	2261624	2263442	D	TA19180	join(<2261624..2261912,2262045..2262335,2262509..2262605,2262681..2262859,2263052..2263120,2263171..>2263442)	Theileria annulata	3863786
TA19165	mRNA	TA19165	NC_011129.2	2263603	2266146	R	TA19165	complement(join(<2263603..2265664,2265785..>2266146))	Theileria annulata	3863783
TA19160	mRNA	TA19160	NC_011129.2	2267133	2268322	D	TA19160	join(<2267133..2267318,2267423..2267530,2267600..>2268322)	Theileria annulata	3863782
TA19155	mRNA	TA19155	NC_011129.2	2268651	2271974	D	TA19155	join(<2268651..2268792,2268991..2269311,2269341..2269745,2269981..2270611,2270701..2271535,2271624..>2271974)	Theileria annulata	3863781
TA19150	mRNA	TA19150	NC_011129.2	2272399	2274966	R	TA19150	complement(join(<2272399..2273954,2274051..>2274966))	Theileria annulata	3863780
TA19145	mRNA	TA19145	NC_011129.2	2275304	2278098	R	TA19145	complement(join(<2275304..2277843,2277891..>2278098))	Theileria annulata	3863779
TA19140	mRNA	TA19140	NC_011129.2	2278645	2279490	D	TA19140	join(<2278645..2279059,2279153..>2279490)	Theileria annulata	3863778
TA19135	mRNA	TA19135	NC_011129.2	2279531	2279767	R	TA19135	complement(<2279531..>2279767)	Theileria annulata	3863777
TA19130	mRNA	TA19130	NC_011129.2	2279837	2282144	R	TA19130	complement(join(<2279837..2279923,2279936..2279962,2280041..2280250,2280370..2280563,2280654..2280861,2280974..2281042,2281073..2281153,2281269..2281304,2281336..2281516,2281588..2281679,2281742..2281893,2281928..>2282144))	Theileria annulata	3863776
TA19125	mRNA	TA19125	NC_011129.2	2282312	2283000	D	TA19125	join(<2282312..2282447,2282506..2282627,2282698..2282742,2282775..2282823,2282890..2282927,2282974..>2283000)	Theileria annulata	3863775
TA19120	mRNA	TA19120	NC_011129.2	2283399	2283885	D	TA19120	join(<2283399..2283734,2283835..>2283885)	Theileria annulata	3863774
TA19110	mRNA	TA19110	NC_011129.2	2285335	2287326	D	TA19110	join(<2285335..2285795,2285832..2286453,2286542..2286684,2286721..2286883,2286930..2287027,2287085..2287145,2287192..>2287326)	Theileria annulata	3863995
TA19100	mRNA	TA19100	NC_011129.2	2287385	2289222	R	TA19100	complement(join(<2287385..2287592,2287621..2287693,2287755..2287895,2287933..2288072,2288107..2288180,2288218..2288421,2288478..2288609,2288641..2288810,2288877..>2289222))	Theileria annulata	3863994
TA19095	mRNA	TA19095	NC_011129.2	2289267	2289983	R	TA19095	complement(<2289267..>2289983)	Theileria annulata	3863993
TA19090	mRNA	TA19090	NC_011129.2	2290254	2292530	R	TA19090	complement(join(<2290254..2290409,2290449..2290690,2290750..2290907,2290970..2291110,2291140..2291252,2291282..2291530,2291589..2292017,2292087..>2292530))	Theileria annulata	3863992
TA19085	mRNA	TA19085	NC_011129.2	2292644	2293764	D	TA19085	join(<2292644..2293348,2293398..2293533,2293574..>2293764)	Theileria annulata	3863991
TA19080	mRNA	TA19080	NC_011129.2	2293823	2295666	D	TA19080	join(<2293823..2293830,2293858..2295389,2295455..>2295666)	Theileria annulata	3863990
TA19075	mRNA	TA19075	NC_011129.2	2296012	2299650	D	TA19075	<2296012..>2299650	Theileria annulata	3863989
TA19070	mRNA	TA19070	NC_011129.2	2300059	2302491	D	TA19070	<2300059..>2302491	Theileria annulata	3863988
TA19065	mRNA	TA19065	NC_011129.2	2302782	2304406	R	TA19065	complement(join(<2302782..2303087,2303116..2303199,2303262..2303295,2303327..2303438,2303497..2303579,2303616..2303658,2303691..2303738,2303770..2303825,2303995..2304140,2304173..2304263,2304294..>2304406))	Theileria annulata	3863987
TA19055	mRNA	TA19055	NC_011129.2	2304877	2306051	R	TA19055	complement(join(<2304877..2305671,2305756..2305911,2305962..>2306051))	Theileria annulata	3863985
TA19050	mRNA	TA19050	NC_011129.2	2306824	2307623	R	TA19050	complement(join(<2306824..2307446,2307482..>2307623))	Theileria annulata	3863984
TA19045	mRNA	TA19045	NC_011129.2	2307991	2308543	D	TA19045	join(<2307991..2308356,2308394..>2308543)	Theileria annulata	3863983
TA19040	mRNA	TA19040	NC_011129.2	2308634	2309671	D	TA19040	join(<2308634..2308705,2308806..2308875,2308911..2308951,2309018..2309170,2309279..>2309671)	Theileria annulata	3863982
TA19035	mRNA	TA19035	NC_011129.2	2309830	2311007	R	TA19035	complement(join(<2309830..2309916,2309979..2310330,2310374..2310467,2310524..2310737,2310798..>2311007))	Theileria annulata	3863981
TA19030	mRNA	TA19030	NC_011129.2	2311390	2312043	D	TA19030	<2311390..>2312043	Theileria annulata	3863980
TA19025	mRNA	TA19025	NC_011129.2	2312189	2313739	R	TA19025	complement(join(<2312189..2312284,2312317..2312720,2312751..2312803,2312836..2312953,2313012..2313465,2313524..>2313739))	Theileria annulata	3863979
TA19020	mRNA	TA19020	NC_011129.2	2314438	2315706	D	TA19020	<2314438..>2315706	Theileria annulata	3863978
TA19015	mRNA	TA19015	NC_011129.2	2315787	2319173	R	TA19015	complement(join(<2315787..2315840,2315892..2315960,2316022..2317070,2317139..2317597,2317628..2317675,2317750..2318020,2318059..2318226,2318296..2318439,2318475..2318600,2318659..2318730,2318790..2318930,2318985..>2319173))	Theileria annulata	3863977
TA19010	mRNA	TA19010	NC_011129.2	2319545	2321581	D	TA19010	join(<2319545..2319637,2319710..2319865,2319935..2320309,2320375..2320827,2320893..2321071,2321196..2321320,2321388..>2321581)	Theileria annulata	3863976
TA19000	mRNA	TA19000	NC_011129.2	2321630	2323850	R	TA19000	complement(join(<2321630..2322841,2322936..2323070,2323130..2323197,2323266..2323504,2323672..>2323850))	Theileria annulata	3863634
TA18995	mRNA	TA18995	NC_011129.2	2324470	2326201	D	TA18995	join(<2324470..2324842,2324894..2325717,2325764..>2326201)	Theileria annulata	3863633
TA18990	mRNA	TA18990	NC_011129.2	2326222	2328827	R	TA18990	complement(join(<2326222..2326353,2326400..2326585,2326655..2326848,2326899..2327077,2327154..2327316,2327378..2327591,2327668..2327867,2327948..2328203,2328269..2328384,2328425..>2328827))	Theileria annulata	3863632
TA18985	mRNA	TA18985	NC_011129.2	2328953	2331098	D	TA18985	join(<2328953..2329765,2329844..2330224,2330279..2330527,2330565..2330747,2330799..2330874,2330983..>2331098)	Theileria annulata	3863631
TA18980	mRNA	TA18980	NC_011129.2	2332293	2333561	D	TA18980	join(<2332293..2332358,2332388..2332634,2332664..2332815,2332902..>2333561)	Theileria annulata	3863630
TA18975	mRNA	TA18975	NC_011129.2	2334154	2337669	R	TA18975	complement(join(<2334154..2334234,2334266..2334418,2334451..2334603,2334634..2334768,2334820..2335014,2335071..2335703,2335773..2335897,2335943..2336018,2336071..2336178,2336208..2336318,2336387..2336437,2336482..2336557,2336612..2337030,2337061..2337168,2337207..2337357,2337388..2337474,2337506..>2337669))	Theileria annulata	3863629
TA18970	mRNA	TA18970	NC_011129.2	2338076	2340594	R	TA18970	complement(join(<2338076..2338276,2338360..2339031,2339127..2339336,2339368..2339501,2339536..2339683,2339749..2339930,2340012..2340246,2340278..2340392,2340423..2340498,2340528..>2340594))	Theileria annulata	3863628
TA18965	mRNA	TA18965	NC_011129.2	2341208	2342787	D	TA18965	join(<2341208..2341436,2341470..2341600,2341635..2341685,2341716..2341776,2341808..2341966,2341998..2342065,2342096..2342149,2342180..2342293,2342349..2342450,2342480..2342520,2342590..2342647,2342677..>2342787)	Theileria annulata	3863627
TA18960	mRNA	TA18960	NC_011129.2	2342953	2346237	D	TA18960	join(<2342953..2345887,2345932..2346077,2346169..>2346237)	Theileria annulata	3863626
TA18955	mRNA	TA18955	NC_011129.2	2346422	2347983	R	TA18955	complement(join(<2346422..2346526,2346556..2346622,2346652..2346706,2346735..2346792,2346862..2346929,2346964..2347123,2347153..2347395,2347459..2347763,2347791..>2347983))	Theileria annulata	3863625
TA18945	mRNA	TA18945	NC_011129.2	2348108	2348679	D	TA18945	join(<2348108..2348160,2348304..>2348679)	Theileria annulata	3863623
TA18940	mRNA	TA18940	NC_011129.2	2348737	2350216	R	TA18940	complement(join(<2348737..2348782,2348814..2348857,2348888..2349082,2349135..2349248,2349302..2349397,2349439..2349607,2349681..2349844,2349875..>2350216))	Theileria annulata	3863622
TA18935	mRNA	TA18935	NC_011129.2	2350375	2350837	D	TA18935	join(<2350375..2350524,2350595..>2350837)	Theileria annulata	3863621
TA18930	mRNA	TA18930	NC_011129.2	2351182	2354193	D	TA18930	<2351182..>2354193	Theileria annulata	3863620
TA18925	mRNA	TA18925	NC_011129.2	2354515	2357658	R	TA18925	complement(join(<2354515..2357510,2357622..>2357658))	Theileria annulata	3863619
TA18920	mRNA	TA18920	NC_011129.2	2358117	2359437	D	TA18920	join(<2358117..2358221,2358258..2358329,2358414..2358496,2358581..2358833,2358927..2359016,2359051..2359317,2359369..>2359437)	Theileria annulata	3863618
TA18915	mRNA	TA18915	NC_011129.2	2359666	2360144	D	TA18915	join(<2359666..2359801,2359887..2359957,2360037..>2360144)	Theileria annulata	3863617
TA18910	mRNA	TA18910	NC_011129.2	2360611	2361707	D	TA18910	join(<2360611..2360689,2360721..2360781,2360867..2360957,2360987..2361076,2361107..2361187,2361244..2361364,2361428..2361528,2361576..>2361707)	Theileria annulata	3864327
TA18905	mRNA	TA18905	NC_011129.2	2361741	2363435	R	TA18905	complement(join(<2361741..2361784,2361822..2361870,2361984..2362024,2362056..2362161,2362206..2362278,2362334..2362574,2362645..2363081,2363131..2363252,2363310..>2363435))	Theileria annulata	3864326
TA18900	mRNA	TA18900	NC_011129.2	2363813	2365539	D	TA18900	join(<2363813..2364013,2364046..2364545,2364591..>2365539)	Theileria annulata	3864325
TA20080	mRNA	TA20080	NC_011129.2	2365933	2366882	D	TA20080	join(<2365933..2366040,2366102..2366153,2366210..2366337,2366415..2366552,2366612..2366737,2366790..>2366882)	Theileria annulata	3864461
TA20075	mRNA	TA20075	NC_011129.2	2367076	2368144	R	TA20075	complement(join(<2367076..2367188,2367254..2367319,2367351..2367443,2367474..2367626,2367712..>2368144))	Theileria annulata	3864460
TA20070	mRNA	TA20070	NC_011129.2	2368501	2371006	R	TA20070	complement(join(<2368501..2368672,2368766..2369232,2369306..2369608,2369665..2370092,2370152..2370640,2370754..>2371006))	Theileria annulata	3864459
TA20065	mRNA	TA20065	NC_011129.2	2371349	2372103	R	TA20065	complement(join(<2371349..2371475,2371563..2371713,2371766..2371907,2371993..>2372103))	Theileria annulata	3864458
TA20060	mRNA	TA20060	NC_011129.2	2372231	2373364	R	TA20060	complement(<2372231..>2373364)	Theileria annulata	3864457
TA20055	mRNA	TA20055	NC_011129.2	2373831	2375954	R	TA20055	complement(<2373831..>2375954)	Theileria annulata	3864456
TA20050	mRNA	TA20050	NC_011129.2	2376580	2379863	D	TA20050	join(<2376580..2376766,2376796..2376852,2376921..2377094,2377146..2377382,2377430..2377797,2377858..2378052,2378098..2378166,2378236..2378542,2378614..2378874,2378937..2379407,2379472..>2379863)	Theileria annulata	3864455
TA20045	mRNA	TA20045	NC_011129.2	2380263	2382629	D	TA20045	<2380263..>2382629	Theileria annulata	3864454
TA20040	mRNA	TA20040	NC_011129.2	2382698	2383452	D	TA20040	join(<2382698..2382793,2382825..2382888,2382981..2383043,2383079..2383117,2383148..2383180,2383240..2383284,2383361..>2383452)	Theileria annulata	3864453
TA20035	mRNA	TA20035	NC_011129.2	2383714	2385650	D	TA20035	join(<2383714..2383833,2383866..2383923,2383953..2384263,2384331..2384384,2384468..2384619,2384693..2384803,2384885..>2385650)	Theileria annulata	3864452
TA20030	mRNA	TA20030	NC_011129.2	2385809	2386327	R	TA20030	complement(<2385809..>2386327)	Theileria annulata	3864451
TA20025	mRNA	TA20025	NC_011129.2	2386811	2387599	D	TA20025	<2386811..>2387599	Theileria annulata	3864450
TA20020	mRNA	TA20020	NC_011129.2	2388232	2396649	D	TA20020	join(<2388232..2391112,2391177..2394064,2394143..2394725,2394795..2395415,2395637..2396092,2396165..>2396649)	Theileria annulata	3864449
TA20015	mRNA	TA20015	NC_011129.2	2396802	2398575	R	TA20015	complement(join(<2396802..2396996,2397046..2397252,2397287..2397450,2397530..2397880,2398071..2398198,2398244..2398461,2398492..>2398575))	Theileria annulata	3864448
TA20010	mRNA	TA20010	NC_011129.2	2398834	2401427	D	TA20010	join(<2398834..2400044,2400134..>2401427)	Theileria annulata	3864447
TA20005	mRNA	TA20005	NC_011129.2	2401919	2404670	R	TA20005	complement(join(<2401919..2402107,2402219..2403359,2403400..2403500,2403549..2403726,2403799..>2404670))	Theileria annulata	3864446
TA20000	mRNA	TA20000	NC_011129.2	2405035	2405980	D	TA20000	join(<2405035..2405317,2405422..2405718,2405796..>2405980)	Theileria annulata	3864445
TA19995	mRNA	TA19995	NC_011129.2	2406192	2407057	R	TA19995	complement(join(<2406192..2406464,2406498..2406583,2406613..2406700,2406768..2406833,2406863..2406924,2406964..>2407057))	Theileria annulata	3864169
TA19990	mRNA	TA19990	NC_011129.2	2408217	2410342	D	TA19990	join(<2408217..2409020,2409086..>2410342)	Theileria annulata	3864168
TA19985	mRNA	TA19985	NC_011129.2	2410677	2411504	D	TA19985	join(<2410677..2411084,2411138..2411281,2411358..>2411504)	Theileria annulata	3864167
TA19980	mRNA	TA19980	NC_011129.2	2411556	2412138	R	TA19980	complement(join(<2411556..2411698,2411738..2411854,2411892..>2412138))	Theileria annulata	3864166
TA19975	mRNA	TA19975	NC_011129.2	2412782	2413873	D	TA19975	<2412782..>2413873	Theileria annulata	3864165
TA19970	mRNA	TA19970	NC_011129.2	2413933	2414330	R	TA19970	complement(join(<2413933..2414120,2414153..2414242,2414279..>2414330))	Theileria annulata	3864164
TA19965	mRNA	TA19965	NC_011129.2	2415551	2420951	D	TA19965	join(<2415551..2415682,2415717..2416708,2416748..2420265,2420300..2420409,2420443..2420738,2420789..>2420951)	Theileria annulata	3864163
TA19960	mRNA	TA19960	NC_011129.2	2421125	2421795	R	TA19960	complement(join(<2421125..2421288,2421328..2421465,2421531..>2421795))	Theileria annulata	3864162
TA19955	mRNA	TA19955	NC_011129.2	2422006	2424308	D	TA19955	join(<2422006..2422618,2422648..2422725,2422763..2422864,2422917..2423104,2423161..2423223,2423296..2423587,2423641..>2424308)	Theileria annulata	3864161
TA19950	mRNA	TA19950	NC_011129.2	2424346	2425019	R	TA19950	complement(join(<2424346..2424626,2424701..2424806,2424852..>2425019))	Theileria annulata	3864160
TA19945	mRNA	TA19945	NC_011129.2	2425160	2427892	R	TA19945	complement(<2425160..>2427892)	Theileria annulata	3864159
TA19940	mRNA	TA19940	NC_011129.2	2428153	2428844	D	TA19940	join(<2428153..2428398,2428437..2428713,2428750..>2428844)	Theileria annulata	3864158
TA19935	mRNA	TA19935	NC_011129.2	2428901	2431674	R	TA19935	complement(join(<2428901..2429069,2429140..2430091,2430174..>2431674))	Theileria annulata	3864157
TA19930	mRNA	TA19930	NC_011129.2	2432934	2433165	D	TA19930	join(<2432934..2432950,2432982..>2433165)	Theileria annulata	3864156
TA19925	mRNA	TA19925	NC_011129.2	2433367	2435991	R	TA19925	complement(join(<2433367..2433759,2433814..2433968,2433997..2434134,2434197..2434310,2434341..2434408,2434475..2434609,2434679..2434982,2435013..2435198,2435228..2435378,2435425..2435549,2435588..2435702,2435746..>2435991))	Theileria annulata	3864155
TA19920	mRNA	TA19920	NC_011129.2	2437801	2440293	R	TA19920	complement(<2437801..>2440293)	Theileria annulata	3864154
TA19915	mRNA	TA19915	NC_011129.2	2441028	2441497	R	TA19915	complement(join(<2441028..2441284,2441378..2441469,2441484..>2441497))	Theileria annulata	3864153
TA19910	mRNA	TA19910	NC_011129.2	2441641	2441910	R	TA19910	complement(<2441641..>2441910)	Theileria annulata	3864152
TA19905	mRNA	TA19905	NC_011129.2	2442099	2442436	R	TA19905	complement(join(<2442099..2442295,2442331..>2442436))	Theileria annulata	3864151
TA19900	mRNA	TA19900	NC_011129.2	2442599	2444827	D	TA19900	join(<2442599..2443022,2443055..2443117,2443194..2443252,2443283..2443367,2443399..2443523,2443555..2443641,2443677..2443991,2444032..2444142,2444174..2444243,2444313..2444377,2444408..2444510,2444568..2444626,2444657..>2444827)	Theileria annulata	3864386
TA19895	mRNA	TA19895	NC_011129.2	2444947	2446172	R	TA19895	complement(join(<2444947..2445093,2445128..2445281,2445331..2445463,2445526..2445851,2445884..2446010,2446040..>2446172))	Theileria annulata	3864385
TA19890	mRNA	TA19890	NC_011129.2	2446260	2447880	R	TA19890	complement(join(<2446260..2446432,2446514..2446811,2446847..2447149,2447180..2447259,2447296..2447450,2447484..2447637,2447679..>2447880))	Theileria annulata	3864384
TA19885	mRNA	TA19885	NC_011129.2	2448095	2448582	D	TA19885	join(<2448095..2448415,2448451..>2448582)	Theileria annulata	3864383
TA19880	mRNA	TA19880	NC_011129.2	2448633	2450223	R	TA19880	complement(join(<2448633..2449091,2449120..2449357,2449391..2449593,2449623..2449724,2449760..2449847,2449890..2449991,2450021..>2450223))	Theileria annulata	3864382
TA19875	mRNA	TA19875	NC_011129.2	2450418	2453747	D	TA19875	join(<2450418..2450685,2450755..2450877,2450911..2452556,2452590..>2453747)	Theileria annulata	3864381
TA19870	mRNA	TA19870	NC_011129.2	2453840	2454729	R	TA19870	complement(join(<2453840..2453950,2453972..2454247,2454280..>2454729))	Theileria annulata	3864380
TA19865	mRNA	TA19865	NC_011129.2	2455778	2456314	R	TA19865	complement(<2455778..>2456314)	Theileria annulata	3864379
TA19860	mRNA	TA19860	NC_011129.2	2457168	2459000	D	TA19860	join(<2457168..2457357,2457392..2457449,2457490..2457651,2457684..2457783,2457816..2457930,2457962..2458047,2458080..2458268,2458299..2458480,2458514..2458751,2458785..2458900,2458931..>2459000)	Theileria annulata	3864378
TA19855	mRNA	TA19855	NC_011129.2	2459059	2461148	D	TA19855	join(<2459059..2459274,2459310..2459418,2459462..2459538,2459570..2459635,2459666..2460004,2460033..2460088,2460120..2460202,2460233..2460371,2460416..2460726,2460760..2460817,2460920..2461051,2461082..>2461148)	Theileria annulata	3864377
TA19850	mRNA	TA19850	NC_011129.2	2461259	2461744	D	TA19850	<2461259..>2461744	Theileria annulata	3864376
TA19845	mRNA	TA19845	NC_011129.2	2461794	2463745	R	TA19845	complement(join(<2461794..2461901,2462009..2462179,2462207..>2463745))	Theileria annulata	3864375
TA19840	mRNA	TA19840	NC_011129.2	2463993	2465321	R	TA19840	complement(join(<2463993..2464154,2464187..2464417,2464451..2464540,2464571..2464929,2464961..2465231,2465265..>2465321))	Theileria annulata	3864374
TA19835	mRNA	TA19835	NC_011129.2	2465691	2467574	D	TA19835	<2465691..>2467574	Theileria annulata	3864373
TA19830	mRNA	TA19830	NC_011129.2	2467571	2469353	R	TA19830	complement(join(<2467571..2467784,2467814..2467880,2467929..2468042,2468073..2468176,2468206..2468287,2468316..2468386,2468417..2468435,2468467..2468509,2468539..2468588,2468620..2468725,2468758..2468882,2468918..2469097,2469141..2469212,2469251..>2469353))	Theileria annulata	3864372
TA19825	mRNA	TA19825	NC_011129.2	2469812	2470517	D	TA19825	join(<2469812..2469895,2469930..>2470517)	Theileria annulata	3864371
TA19824	mRNA	TA19824	NC_011129.2	2470789	2470986	D	TA19824	<2470789..>2470986	Theileria annulata	3864370
TA19823	mRNA	TA19823	NC_011129.2	2471231	2471653	D	TA19823	join(<2471231..2471341,2471372..>2471653)	Theileria annulata	3864369
TA19820	mRNA	TA19820	NC_011129.2	2471738	2472558	R	TA19820	complement(join(<2471738..2471845,2471861..2471951,2471969..2472091,2472121..2472226,2472275..2472334,2472380..2472403,2472456..>2472558))	Theileria annulata	3864368
TA19815	mRNA	TA19815	NC_011129.2	2472841	2473244	D	TA19815	join(<2472841..2472889,2472932..2472948,2472981..>2473244)	Theileria annulata	3864367
TA19810	mRNA	TA19810	NC_011129.2	2473371	2474828	R	TA19810	complement(<2473371..>2474828)	Theileria annulata	3863906
TA19805	mRNA	TA19805	NC_011129.2	2475280	2476142	R	TA19805	complement(join(<2475280..2475556,2475589..2475847,2475881..>2476142))	Theileria annulata	3863905
TA19800	mRNA	TA19800	NC_011129.2	2476204	2477661	R	TA19800	complement(<2476204..>2477661)	Theileria annulata	3863904
TA19795	mRNA	TA19795	NC_011129.2	2478107	2479559	D	TA19795	join(<2478107..2478233,2478271..2478603,2478634..>2479559)	Theileria annulata	3863903
TA19790	mRNA	TA19790	NC_011129.2	2479580	2480602	R	TA19790	complement(join(<2479580..2479791,2479822..2479957,2479989..2480066,2480100..2480187,2480220..2480346,2480380..2480493,2480524..>2480602))	Theileria annulata	3863902
TA19785	mRNA	TA19785	NC_011129.2	2480941	2481952	D	TA19785	join(<2480941..2481591,2481620..>2481952)	Theileria annulata	3863901
TA19780	mRNA	TA19780	NC_011129.2	2482342	2483306	D	TA19780	join(<2482342..2482576,2482606..2482800,2482830..2482945,2482977..>2483306)	Theileria annulata	3863900
TA19775	mRNA	TA19775	NC_011129.2	2483342	2484718	R	TA19775	complement(<2483342..>2484718)	Theileria annulata	3863899
TA19770	mRNA	TA19770	NC_011129.2	2485277	2486906	D	TA19770	join(<2485277..2486194,2486226..2486462,2486493..2486606,2486637..>2486906)	Theileria annulata	3863898
TA19765	mRNA	TA19765	NC_011129.2	2487342	2489224	R	TA19765	complement(join(<2487342..2487416,2487447..2487576,2487608..2487760,2487791..2487903,2487934..2488053,2488086..2488120,2488233..2488365,2488393..2488460,2488490..2488650,2488683..>2489224))	Theileria annulata	3863897
TA19760	mRNA	TA19760	NC_011129.2	2489952	2491199	D	TA19760	join(<2489952..2490659,2490691..2490857,2490923..>2491199)	Theileria annulata	3863896
TA19755	mRNA	TA19755	NC_011129.2	2491298	2493976	D	TA19755	join(<2491298..2491588,2491624..2493188,2493235..>2493976)	Theileria annulata	3863895
TA19750	mRNA	TA19750	NC_011129.2	2494523	2496121	D	TA19750	<2494523..>2496121	Theileria annulata	3863894
TA19745	mRNA	TA19745	NC_011129.2	2496246	2498204	R	TA19745	complement(<2496246..>2498204)	Theileria annulata	3863893
TA19740	mRNA	TA19740	NC_011129.2	2498488	2499718	R	TA19740	complement(join(<2498488..2498726,2498777..2498853,2498884..2499020,2499056..2499277,2499309..2499388,2499421..>2499718))	Theileria annulata	3863892
TA19735	mRNA	TA19735	NC_011129.2	2499800	2500864	R	TA19735	complement(<2499800..>2500864)	Theileria annulata	3863891
TA19730	mRNA	TA19730	NC_011129.2	2501213	2502596	R	TA19730	complement(join(<2501213..2501886,2501924..2502034,2502064..2502102,2502133..2502236,2502266..2502535,2502568..>2502596))	Theileria annulata	3863890
TA19725	mRNA	TA19725	NC_011129.2	2503329	2505533	R	TA19725	complement(<2503329..>2505533)	Theileria annulata	3863889
TA19720	mRNA	TA19720	NC_011129.2	2505846	2507638	D	TA19720	join(<2505846..2506010,2506041..2506260,2506446..2506546,2506578..2507069,2507146..2507278,2507442..>2507638)	Theileria annulata	3863888
TA19715	mRNA	TA19715	NC_011129.2	2508195	2511038	D	TA19715	join(<2508195..2509305,2509372..2509564,2509711..2509770,2509805..2509974,2510114..2510300,2510372..>2511038)	Theileria annulata	3863868
TA19710	mRNA	TA19710	NC_011129.2	2511368	2518525	D	TA19710	join(<2511368..2512334,2512421..2513539,2513645..2514014,2514047..2515644,2515719..2518266,2518339..>2518525)	Theileria annulata	3863867
TA19670	mRNA	TA19670	NC_011129.2	2518636	2520274	R	TA19670	complement(join(<2518636..2518850,2518917..2519679,2519750..>2520274))	Theileria annulata	3863860
TA19615	mRNA	TA19615	NC_011129.2	2520454	2521731	R	TA19615	complement(join(<2520454..2520818,2520960..>2521731))	Theileria annulata	3863849
TA19560	mRNA	TA19560	NC_011129.2	2521926	2526105	R	TA19560	complement(join(<2521926..2522153,2522301..2522506,2522644..2522719,2522846..2522878,2522908..2523593,2523710..2523908,2523939..2524010,2524140..2524332,2524435..2524997,2525078..2525333,2525365..2525430,2525518..2525623,2525706..2525815,2525847..2525859,2525913..>2526105))	Theileria annulata	3864043
TA19555	mRNA	TA19555	NC_011129.2	2527089	2529927	D	TA19555	join(<2527089..2528393,2528521..2529511,2529635..>2529927)	Theileria annulata	3864042
TA19450	mRNA	TA19450	NC_011129.2	2530391	2532732	R	TA19450	complement(join(<2530391..2530625,2530717..2530982,2531022..2531127,2531202..2531924,2531956..2532096,2532239..>2532732))	Theileria annulata	3863643
TA19445	mRNA	TA19445	NC_011129.2	2533392	2535272	D	TA19445	<2533392..>2535272	Theileria annulata	3863642
TA19390	mRNA	TA19390	NC_011129.2	2535697	2537829	D	TA19390	<2535697..>2537829	Theileria annulata	3864499
TA19335	mRNA	TA19335	NC_011129.2	2538103	2539300	D	TA19335	join(<2538103..2538267,2538298..2538543,2538575..2538679,2538710..2538777,2538809..2538944,2539024..2539119,2539148..>2539300)	Theileria annulata	3864488
TA19280	mRNA	TA19280	NC_011129.2	2539605	2540114	D	TA19280	join(<2539605..2539738,2539793..2539875,2539906..>2540114)	Theileria annulata	3864478
TA19175	mRNA	TA19175	NC_011129.2	2540622	2545199	R	TA19175	complement(<2540622..>2545199)	Theileria annulata	3863785
TA19170	mRNA	TA19170	NC_011129.2	2546359	2549297	D	TA19170	join(<2546359..2547632,2547674..>2549297)	Theileria annulata	3863784
TA19115	mRNA	TA19115	NC_011129.2	2550478	2557515	D	TA19115	<2550478..>2557515	Theileria annulata	3863773
TA19060	mRNA	TA19060	NC_011129.2	2557972	2559012	D	TA19060	<2557972..>2559012	Theileria annulata	3863986
TA19005	mRNA	TA19005	NC_011129.2	2559353	2561176	D	TA19005	<2559353..>2561176	Theileria annulata	3863635
TA18950	mRNA	TA18950	NC_011129.2	2561444	2563261	D	TA18950	<2561444..>2563261	Theileria annulata	3863624
TA18895	mRNA	TA18895	NC_011129.2	2563483	2564892	D	TA18895	<2563483..>2564892	Theileria annulata	3864324
TA18890	mRNA	TA18890	NC_011129.2	2565128	2566489	D	TA18890	<2565128..>2566489	Theileria annulata	3864323
TA18885	mRNA	TA18885	NC_011129.2	2566702	2568492	D	TA18885	<2566702..>2568492	Theileria annulata	3864322
TA18880	mRNA	TA18880	NC_011129.2	2569016	2569894	D	TA18880	<2569016..>2569894	Theileria annulata	3864321
TA18875	mRNA	TA18875	NC_011129.2	2570855	2571949	D	TA18875	<2570855..>2571949	Theileria annulata	3864320
TA18870	mRNA	TA18870	NC_011129.2	2572786	2575830	R	TA18870	complement(<2572786..>2575830)	Theileria annulata	3864319
TA18865	mRNA	TA18865	NC_011129.2	2577067	2578575	D	TA18865	<2577067..>2578575	Theileria annulata	3864318
TA18860	mRNA	TA18860	NC_011129.2	2578905	2581529	D	TA18860	<2578905..>2581529	Theileria annulata	3864317
TA18855	mRNA	TA18855	NC_011129.2	2582678	2589937	D	TA18855	<2582678..>2589937	Theileria annulata	3864316
TA17350	mRNA	TA17350	NW_001091930.1	500	5080	D	TA17350	<500..>5080	Theileria annulata	3864543
TA17355	mRNA	TA17355	NW_001091930.1	5889	11789	R	TA17355	complement(<5889..>11789)	Theileria annulata	3864544
TA09765	mRNA	TA09765	NW_001091930.1	14336	15378	D	TA09765	<14336..>15378	Theileria annulata	3864542
TA17491	mRNA	TA17491	NW_001091931.1	1	3616	D	TA17491	<1..>3616	Theileria annulata	3864549
TA17490	mRNA	TA17490	NW_001091931.1	4080	4844	D	TA17490	<4080..>4844	Theileria annulata	3864548
TA17485	mRNA	TA17485	NW_001091931.1	6210	7442	D	TA17485	<6210..>7442	Theileria annulata	3864547
TA17480	mRNA	TA17480	NW_001091931.1	7729	9285	D	TA17480	join(<7729..8093,8421..>9285)	Theileria annulata	3864546
TA17475	mRNA	TA17475	NW_001091931.1	9605	10987	D	TA17475	<9605..>10987	Theileria annulata	3864545
TA17358	mRNA	TA17358	NW_001091932.1	3423	10436	R	TA17358	complement(<3423..>10436)	Theileria annulata	3864551
TA17346	mRNA	TA17346	NW_001091932.1	11836	12928	R	TA17346	complement(<11836..>12928)	Theileria annulata	3864550
TA16055	mRNA	TA16055	NC_011099.1	3563	7171	R	TA16055	complement(<3563..>7171)	Theileria annulata	3862307
TA16050	mRNA	TA16050	NC_011099.1	8106	23891	R	TA16050	complement(<8106..>23891)	Theileria annulata	3862306
TA16045	mRNA	TA16045	NC_011099.1	24579	26027	R	TA16045	complement(<24579..>26027)	Theileria annulata	3862305
TA16040	mRNA	TA16040	NC_011099.1	27623	29470	R	TA16040	complement(<27623..>29470)	Theileria annulata	3862304
TA16035	mRNA	TA16035	NC_011099.1	29797	31008	R	TA16035	complement(<29797..>31008)	Theileria annulata	3862303
TA16030	mRNA	TA16030	NC_011099.1	31417	33132	R	TA16030	complement(<31417..>33132)	Theileria annulata	3861852
TA16025	mRNA	TA16025	NC_011099.1	33419	35101	R	TA16025	complement(<33419..>35101)	Theileria annulata	3861851
TA16020	mRNA	TA16020	NC_011099.1	35497	36564	R	TA16020	complement(<35497..>36564)	Theileria annulata	3861850
TA16015	mRNA	TA16015	NC_011099.1	38170	42720	D	TA16015	<38170..>42720	Theileria annulata	3861849
TA16010	mRNA	TA16010	NC_011099.1	43190	46132	R	TA16010	complement(join(<43190..44333,44379..44816,44856..>46132))	Theileria annulata	3861848
TA16005	mRNA	TA16005	NC_011099.1	47220	48503	R	TA16005	complement(<47220..>48503)	Theileria annulata	3861847
TA16000	mRNA	TA16000	NC_011099.1	49046	49760	R	TA16000	complement(join(<49046..49236,49280..49432,49550..>49760))	Theileria annulata	3861846
TA15985	mRNA	TA15985	NC_011099.1	50479	51160	D	TA15985	join(<50479..50681,50719..50776,50828..50908,50939..>51160)	Theileria annulata	3861843
TA15980	mRNA	TA15980	NC_011099.1	51506	53120	R	TA15980	complement(join(<51506..51670,51707..51897,51961..52086,52409..52530,52570..52667,52701..52808,52840..52959,53070..>53120))	Theileria annulata	3861842
TA15975	mRNA	TA15975	NC_011099.1	53604	55443	D	TA15975	join(<53604..53880,53956..54072,54103..54210,54239..54310,54341..54414,54443..54514,54547..55268,55335..>55443)	Theileria annulata	3861841
TA15970	mRNA	TA15970	NC_011099.1	56158	58461	D	TA15970	<56158..>58461	Theileria annulata	3861840
TA15965	mRNA	TA15965	NC_011099.1	58880	60252	D	TA15965	join(<58880..59294,59324..>60252)	Theileria annulata	3861839
TA15960	mRNA	TA15960	NC_011099.1	60315	63154	R	TA15960	complement(join(<60315..60455,60532..60652,60682..60805,60835..60940,60970..61035,61066..61140,61169..61328,61360..61529,61559..61724,61774..61861,61891..>63154))	Theileria annulata	3861838
TA15955	mRNA	TA15955	NC_011099.1	63465	68000	R	TA15955	complement(<63465..>68000)	Theileria annulata	3861837
TA15950	mRNA	TA15950	NC_011099.1	69133	70176	D	TA15950	<69133..>70176	Theileria annulata	3861836
TA15945	mRNA	TA15945	NC_011099.1	70258	84424	R	TA15945	complement(join(<70258..72863,72975..79711,79778..80240,80274..80422,80504..82322,82390..>84424))	Theileria annulata	3861835
TA15940	mRNA	TA15940	NC_011099.1	84935	86667	R	TA15940	complement(join(<84935..85267,85354..>86667))	Theileria annulata	3861834
TA15935	mRNA	TA15935	NC_011099.1	87035	87910	D	TA15935	<87035..>87910	Theileria annulata	3861833
TA15930	mRNA	TA15930	NC_011099.1	87995	90612	R	TA15930	complement(join(<87995..88468,88535..89036,89084..90433,90530..>90612))	Theileria annulata	3861871
TA15925	mRNA	TA15925	NC_011099.1	91595	93464	D	TA15925	join(<91595..93236,93334..>93464)	Theileria annulata	3861870
TA15920	mRNA	TA15920	NC_011099.1	93576	96138	R	TA15920	complement(join(<93576..94030,94094..94430,94507..95797,95835..95864,95900..96081,96112..>96138))	Theileria annulata	3861869
TA15915	mRNA	TA15915	NC_011099.1	96297	96740	R	TA15915	complement(join(<96297..96391,96431..>96740))	Theileria annulata	3861868
TA15910	mRNA	TA15910	NC_011099.1	97366	101701	D	TA15910	join(<97366..97474,97524..97721,97762..99684,99752..99875,99917..100376,100448..100688,100743..>101701)	Theileria annulata	3861867
TA15905	mRNA	TA15905	NC_011099.1	101731	103018	R	TA15905	complement(join(<101731..102039,102070..102253,102286..102865,102928..>103018))	Theileria annulata	3861866
TA15900	mRNA	TA15900	NC_011099.1	103157	104250	R	TA15900	complement(join(<103157..103262,103316..103455,103532..103662,103812..104022,104119..>104250))	Theileria annulata	3861865
TA15895	mRNA	TA15895	NC_011099.1	104652	106197	R	TA15895	complement(join(<104652..105260,105329..105451,105488..105712,105811..>106197))	Theileria annulata	3861864
TA15890	mRNA	TA15890	NC_011099.1	106644	108180	R	TA15890	complement(join(<106644..106918,106975..107141,107189..107451,107503..107733,107800..>108180))	Theileria annulata	3861863
TA15875	mRNA	TA15875	NC_011099.1	108362	109448	R	TA15875	complement(join(<108362..108467,108521..108660,108728..108858,109010..109220,109317..>109448))	Theileria annulata	3861860
TA15870	mRNA	TA15870	NC_011099.1	109869	111446	R	TA15870	complement(join(<109869..110504,110566..110688,110731..110961,111060..>111446))	Theileria annulata	3861859
TA15865	mRNA	TA15865	NC_011099.1	112475	114355	D	TA15865	<112475..>114355	Theileria annulata	3861858
TA15860	mRNA	TA15860	NC_011099.1	114556	116643	R	TA15860	complement(join(<114556..115066,115096..116543,116599..>116643))	Theileria annulata	3861857
TA15855	mRNA	TA15855	NC_011099.1	116989	117594	R	TA15855	complement(<116989..>117594)	Theileria annulata	3861856
TA15850	mRNA	TA15850	NC_011099.1	117827	119983	R	TA15850	complement(<117827..>119983)	Theileria annulata	3861855
TA15845	mRNA	TA15845	NC_011099.1	120077	120742	R	TA15845	complement(<120077..>120742)	Theileria annulata	3861854
TA15840	mRNA	TA15840	NC_011099.1	121262	122113	R	TA15840	complement(join(<121262..121430,121486..121699,121730..121829,121862..>122113))	Theileria annulata	3861853
TA15835	mRNA	TA15835	NC_011099.1	122239	127531	R	TA15835	complement(join(<122239..122302,122358..>127531))	Theileria annulata	3862007
TA15830	mRNA	TA15830	NC_011099.1	128000	128863	R	TA15830	complement(<128000..>128863)	Theileria annulata	3862006
TA15825	mRNA	TA15825	NC_011099.1	129635	131582	D	TA15825	join(<129635..129661,129705..>131582)	Theileria annulata	3862005
TA15820	mRNA	TA15820	NC_011099.1	131684	134767	R	TA15820	complement(join(<131684..134631,134719..>134767))	Theileria annulata	3862004
TA15815	mRNA	TA15815	NC_011099.1	135161	135457	R	TA15815	complement(<135161..>135457)	Theileria annulata	3862003
TA15810	mRNA	TA15810	NC_011099.1	135560	136195	R	TA15810	complement(<135560..>136195)	Theileria annulata	3862002
TA15805	mRNA	TA15805	NC_011099.1	136173	136709	R	TA15805	complement(<136173..>136709)	Theileria annulata	3862001
TA15800	mRNA	TA15800	NC_011099.1	137294	138166	R	TA15800	complement(<137294..>138166)	Theileria annulata	3862000
TA15795	mRNA	TA15795	NC_011099.1	138816	139678	D	TA15795	join(<138816..139025,139055..>139678)	Theileria annulata	3861999
TA15790	mRNA	TA15790	NC_011099.1	140038	140601	D	TA15790	join(<140038..140078,140145..140209,140247..140301,140335..140407,140467..>140601)	Theileria annulata	3861998
TA15785	mRNA	TA15785	NC_011099.1	140677	142227	D	TA15785	join(<140677..142126,142157..>142227)	Theileria annulata	3861997
TA15780	mRNA	TA15780	NC_011099.1	142268	143128	D	TA15780	<142268..>143128	Theileria annulata	3861996
TA15765	mRNA	TA15765	NC_011099.1	144034	146370	D	TA15765	<144034..>146370	Theileria annulata	3861993
TA15760	mRNA	TA15760	NC_011099.1	146670	149376	D	TA15760	join(<146670..146838,146870..147007,147041..147630,147661..147822,147852..148050,148086..148195,148229..148393,148423..148552,148585..148598,148629..148719,148784..148865,148896..>149376)	Theileria annulata	3861992
TA15755	mRNA	TA15755	NC_011099.1	149412	150881	R	TA15755	complement(join(<149412..150238,150296..>150881))	Theileria annulata	3861991
TA15750	mRNA	TA15750	NC_011099.1	152797	153927	D	TA15750	<152797..>153927	Theileria annulata	3861990
TA15745	mRNA	TA15745	NC_011099.1	154044	155814	R	TA15745	complement(join(<154044..154340,154406..155463,155496..>155814))	Theileria annulata	3861989
TA15740	mRNA	TA15740	NC_011099.1	156545	157796	D	TA15740	join(<156545..156643,156676..157213,157279..>157796)	Theileria annulata	3861988
TA15735	mRNA	TA15735	NC_011099.1	157857	158559	R	TA15735	complement(join(<157857..158210,158254..>158559))	Theileria annulata	3862125
TA15730	mRNA	TA15730	NC_011099.1	158684	163117	R	TA15730	complement(<158684..>163117)	Theileria annulata	3862124
TA15725	mRNA	TA15725	NC_011099.1	163826	166807	D	TA15725	<163826..>166807	Theileria annulata	3862123
TA15720	mRNA	TA15720	NC_011099.1	167581	172189	D	TA15720	join(<167581..170692,170731..170841,170892..>172189)	Theileria annulata	3862122
TA15710	mRNA	TA15710	NC_011099.1	172265	173338	R	TA15710	complement(<172265..>173338)	Theileria annulata	3862120
TA15705	mRNA	TA15705	NC_011099.1	173922	174929	R	TA15705	complement(<173922..>174929)	Theileria annulata	3862119
TA15700	mRNA	TA15700	NC_011099.1	175343	176524	R	TA15700	complement(<175343..>176524)	Theileria annulata	3862118
TA15695	mRNA	TA15695	NC_011099.1	176980	177507	R	TA15695	complement(<176980..>177507)	Theileria annulata	3862117
TA15690	mRNA	TA15690	NC_011099.1	177908	178915	R	TA15690	complement(<177908..>178915)	Theileria annulata	3862116
TA15685	mRNA	TA15685	NC_011099.1	179384	180154	R	TA15685	complement(<179384..>180154)	Theileria annulata	3862115
TA15680	mRNA	TA15680	NC_011099.1	180707	183569	D	TA15680	join(<180707..180745,180859..180975,181025..181651,181872..182231,182277..182407,182440..183184,183242..183397,183498..>183569)	Theileria annulata	3862114
TA15675	mRNA	TA15675	NC_011099.1	183734	190177	D	TA15675	<183734..>190177	Theileria annulata	3862113
TA15670	mRNA	TA15670	NC_011099.1	190224	190799	R	TA15670	complement(<190224..>190799)	Theileria annulata	3862112
TA15665	mRNA	TA15665	NC_011099.1	190929	194347	D	TA15665	join(<190929..191024,191156..191424,191575..191630,191662..191715,191855..192953,192983..193038,193275..193414,193451..193614,193644..193780,193928..193990,194103..>194347)	Theileria annulata	3862111
TA15655	mRNA	TA15655	NC_011099.1	194524	195870	D	TA15655	join(<194524..194799,194923..195034,195542..>195870)	Theileria annulata	3862109
TA15650	mRNA	TA15650	NC_011099.1	195940	196266	R	TA15650	complement(<195940..>196266)	Theileria annulata	3862108
TA15645	mRNA	TA15645	NC_011099.1	196478	196889	D	TA15645	join(<196478..196625,196662..196704,196796..>196889)	Theileria annulata	3862107
TA15640	mRNA	TA15640	NC_011099.1	198517	199078	D	TA15640	join(<198517..198607,198742..198857,199016..>199078)	Theileria annulata	3862164
TA15635	mRNA	TA15635	NC_011099.1	199420	201373	D	TA15635	join(<199420..199591,199622..199936,199980..200070,200193..200242,200319..>201373)	Theileria annulata	3862163
TA15630	mRNA	TA15630	NC_011099.1	201674	207469	D	TA15630	<201674..>207469	Theileria annulata	3862162
TA15625	mRNA	TA15625	NC_011099.1	207923	210118	R	TA15625	complement(<207923..>210118)	Theileria annulata	3862161
TA15620	mRNA	TA15620	NC_011099.1	210361	211369	R	TA15620	complement(join(<210361..211275,211337..>211369))	Theileria annulata	3862160
TA15615	mRNA	TA15615	NC_011099.1	211456	213541	R	TA15615	complement(join(<211456..212096,212148..213098,213277..213327,213439..>213541))	Theileria annulata	3862159
TA15610	mRNA	TA15610	NC_011099.1	213707	214649	D	TA15610	join(<213707..213900,214036..214144,214266..>214649)	Theileria annulata	3862158
TA15600	mRNA	TA15600	NC_011099.1	215484	216041	R	TA15600	complement(<215484..>216041)	Theileria annulata	3862156
TA15595	mRNA	TA15595	NC_011099.1	216574	217206	R	TA15595	complement(<216574..>217206)	Theileria annulata	3862155
TA15590	mRNA	TA15590	NC_011099.1	217303	222231	R	TA15590	complement(<217303..>222231)	Theileria annulata	3862154
TA15585	mRNA	TA15585	NC_011099.1	222315	224524	R	TA15585	complement(join(<222315..223904,224297..>224524))	Theileria annulata	3862153
TA15580	mRNA	TA15580	NC_011099.1	224757	231186	R	TA15580	complement(join(<224757..229977,230690..>231186))	Theileria annulata	3862152
TA15573	mRNA	TA15573	NC_011099.1	232617	233374	D	TA15573	join(<232617..232823,233027..>233374)	Theileria annulata	3862151
TA15570	mRNA	TA15570	NC_011099.1	233994	234593	R	TA15570	complement(<233994..>234593)	Theileria annulata	3862150
TA15565	mRNA	TA15565	NC_011099.1	235315	235959	R	TA15565	complement(join(<235315..235691,235743..235853,235887..>235959))	Theileria annulata	3862149
TA15560	mRNA	TA15560	NC_011099.1	236431	237183	R	TA15560	complement(<236431..>237183)	Theileria annulata	3862148
TA15555	mRNA	TA15555	NC_011099.1	237369	239051	R	TA15555	complement(join(<237369..238120,238292..>239051))	Theileria annulata	3862147
TA15545	mRNA	TA15545	NC_011099.1	240036	242399	R	TA15545	complement(join(<240036..241210,241442..241909,242195..>242399))	Theileria annulata	3862145
TA15540	mRNA	TA15540	NC_011099.1	243145	244146	D	TA15540	<243145..>244146	Theileria annulata	3861630
TA15535	mRNA	TA15535	NC_011099.1	244364	246031	D	TA15535	<244364..>246031	Theileria annulata	3861629
TA15530	mRNA	TA15530	NC_011099.1	246417	247427	D	TA15530	<246417..>247427	Theileria annulata	3861628
TA15525	mRNA	TA15525	NC_011099.1	248012	250699	D	TA15525	<248012..>250699	Theileria annulata	3861627
TA15520	mRNA	TA15520	NC_011099.1	251648	254353	D	TA15520	<251648..>254353	Theileria annulata	3861626
TA15515	mRNA	TA15515	NC_011099.1	254720	256392	R	TA15515	complement(join(<254720..254842,255050..255233,255472..255583,255646..255756,256041..>256392))	Theileria annulata	3861625
TA15510	mRNA	TA15510	NC_011099.1	256650	257168	D	TA15510	<256650..>257168	Theileria annulata	3861624
TA15505	mRNA	TA15505	NC_011099.1	257376	257729	D	TA15505	<257376..>257729	Theileria annulata	3861623
TA15500	mRNA	TA15500	NC_011099.1	257935	261068	D	TA15500	join(<257935..258190,258400..>261068)	Theileria annulata	3861622
TA15490	mRNA	TA15490	NC_011099.1	261580	261939	D	TA15490	<261580..>261939	Theileria annulata	3861620
TA15485	mRNA	TA15485	NC_011099.1	261969	266774	R	TA15485	complement(join(<261969..265229,265392..>266774))	Theileria annulata	3861619
TA15480	mRNA	TA15480	NC_011099.1	266861	267535	R	TA15480	complement(<266861..>267535)	Theileria annulata	3861618
TA15475	mRNA	TA15475	NC_011099.1	267931	276578	R	TA15475	complement(join(<267931..268266,268374..268468,268570..268906,268985..269219,269319..269608,269639..269778,269857..270693,270804..271484,271617..272210,272265..272759,272906..275692,275726..>276578))	Theileria annulata	3861617
TA15470	mRNA	TA15470	NC_011099.1	277362	278493	D	TA15470	join(<277362..277559,277631..277825,277891..278319,278350..>278493)	Theileria annulata	3861616
TA15465	mRNA	TA15465	NC_011099.1	278483	279739	R	TA15465	complement(join(<278483..278957,278996..279102,279139..279391,279425..279507,279629..>279739))	Theileria annulata	3861615
TA15460	mRNA	TA15460	NC_011099.1	279928	280860	D	TA15460	join(<279928..280031,280061..280100,280144..280251,280281..280325,280356..280439,280470..280524,280556..>280860)	Theileria annulata	3861614
TA15455	mRNA	TA15455	NC_011099.1	280944	283220	R	TA15455	complement(join(<280944..281366,281398..281469,281500..281647,281678..282034,282065..282137,282169..282505,282540..282904,282938..>283220))	Theileria annulata	3861613
TA15450	mRNA	TA15450	NC_011099.1	283517	285085	D	TA15450	<283517..>285085	Theileria annulata	3861612
TA15445	mRNA	TA15445	NC_011099.1	288091	289464	R	TA15445	complement(<288091..>289464)	Theileria annulata	3861586
TA15435	mRNA	TA15435	NC_011099.1	289931	291127	R	TA15435	complement(<289931..>291127)	Theileria annulata	3861584
TA15430	mRNA	TA15430	NC_011099.1	291715	292723	R	TA15430	complement(join(<291715..291858,291891..291945,292015..292175,292281..292367,292407..292523,292562..>292723))	Theileria annulata	3861583
TA15425	mRNA	TA15425	NC_011099.1	292903	295181	R	TA15425	complement(join(<292903..293501,293680..293739,293772..294003,294107..294190,294233..294346,294431..294703,294815..294979,295011..>295181))	Theileria annulata	3861582
TA15420	mRNA	TA15420	NC_011099.1	295558	297097	R	TA15420	complement(join(<295558..295940,296003..296548,296643..296715,296768..296856,296907..296954,297043..>297097))	Theileria annulata	3861581
TA15415	mRNA	TA15415	NC_011099.1	297331	298186	R	TA15415	complement(join(<297331..297482,297534..297592,297660..297748,297830..297892,297947..>298186))	Theileria annulata	3861580
TA15410	mRNA	TA15410	NC_011099.1	298611	299588	D	TA15410	join(<298611..298859,298918..299085,299159..299450,299485..>299588)	Theileria annulata	3861579
TA15405	mRNA	TA15405	NC_011099.1	300095	300398	D	TA15405	join(<300095..300109,300168..>300398)	Theileria annulata	3861578
TA15400	mRNA	TA15400	NC_011099.1	300593	300955	D	TA15400	<300593..>300955	Theileria annulata	3861577
TA15395	mRNA	TA15395	NC_011099.1	302062	304141	D	TA15395	join(<302062..302120,302156..302198,302286..302929,302997..303312,303392..303958,304034..>304141)	Theileria annulata	3861576
TA15390	mRNA	TA15390	NC_011099.1	304303	305780	R	TA15390	complement(join(<304303..304547,304675..304988,305059..305161,305191..305260,305586..>305780))	Theileria annulata	3861575
TA15380	mRNA	TA15380	NC_011099.1	305886	307019	D	TA15380	join(<305886..305931,306034..306168,306282..306380,306428..306482,306516..306649,306796..306899,306930..>307019)	Theileria annulata	3861573
TA15375	mRNA	TA15375	NC_011099.1	307330	308887	D	TA15375	join(<307330..307468,307682..307804,307884..308146,308241..308429,308548..308600,308690..308747,308813..>308887)	Theileria annulata	3861572
TA15370	mRNA	TA15370	NC_011099.1	308985	310520	D	TA15370	join(<308985..309013,309090..309120,309234..309538,309670..310213,310368..>310520)	Theileria annulata	3861571
TA15365	mRNA	TA15365	NC_011099.1	311568	313380	D	TA15365	join(<311568..311900,312062..312153,312301..312445,312550..>313380)	Theileria annulata	3861570
TA15360	mRNA	TA15360	NC_011099.1	314180	315180	R	TA15360	complement(join(<314180..314387,314561..314662,314738..314880,314977..>315180))	Theileria annulata	3861569
TA15355	mRNA	TA15355	NC_011099.1	315989	316210	R	TA15355	complement(<315989..>316210)	Theileria annulata	3861568
TA15350	mRNA	TA15350	NC_011099.1	316449	317029	R	TA15350	complement(join(<316449..316643,316824..316907,316940..>317029))	Theileria annulata	3861567
TA15345	mRNA	TA15345	NC_011099.1	317104	319317	R	TA15345	complement(join(<317104..317318,317381..317919,318033..318220,318299..318493,318538..318650,318685..318766,318809..318959,319021..319250,319282..>319317))	Theileria annulata	3861755
TA15340	mRNA	TA15340	NC_011099.1	319965	320282	D	TA15340	<319965..>320282	Theileria annulata	3861754
TA15335	mRNA	TA15335	NC_011099.1	320764	323366	D	TA15335	join(<320764..321178,321285..321419,321451..321587,321636..321732,321854..321909,321939..322100,322215..322332,322362..322449,322490..322559,322691..322892,323024..323206,323293..>323366)	Theileria annulata	3861753
TA15330	mRNA	TA15330	NC_011099.1	323527	325083	D	TA15330	join(<323527..323625,323792..323939,324080..>325083)	Theileria annulata	3861752
TA15325	mRNA	TA15325	NC_011099.1	325167	327658	D	TA15325	join(<325167..325313,325340..>327658)	Theileria annulata	3861751
TA15320	mRNA	TA15320	NC_011099.1	327688	328919	D	TA15320	join(<327688..327724,327736..>328919)	Theileria annulata	3861750
TA15315	mRNA	TA15315	NC_011099.1	329081	329518	R	TA15315	complement(<329081..>329518)	Theileria annulata	3861749
TA15310	mRNA	TA15310	NC_011099.1	329875	330693	D	TA15310	<329875..>330693	Theileria annulata	3861748
TA15305	mRNA	TA15305	NC_011099.1	331395	333110	D	TA15305	<331395..>333110	Theileria annulata	3861747
TA15300	mRNA	TA15300	NC_011099.1	333694	336037	D	TA15300	join(<333694..333787,333882..334181,334211..334366,334398..335149,335219..335634,335665..>336037)	Theileria annulata	3861746
TA15295	mRNA	TA15295	NC_011099.1	336327	337289	D	TA15295	<336327..>337289	Theileria annulata	3861745
TA15290	mRNA	TA15290	NC_011099.1	337616	338284	D	TA15290	<337616..>338284	Theileria annulata	3861744
TA15285	mRNA	TA15285	NC_011099.1	338434	339294	R	TA15285	complement(<338434..>339294)	Theileria annulata	3861743
TA15270	mRNA	TA15270	NC_011099.1	339368	339995	R	TA15270	complement(join(<339368..339853,339885..>339995))	Theileria annulata	3861740
TA15265	mRNA	TA15265	NC_011099.1	341038	342780	D	TA15265	<341038..>342780	Theileria annulata	3861739
TA15260	mRNA	TA15260	NC_011099.1	343138	343658	D	TA15260	join(<343138..343544,343595..>343658)	Theileria annulata	3861738
TA15255	mRNA	TA15255	NC_011099.1	343717	345370	R	TA15255	complement(join(<343717..344590,344634..>345370))	Theileria annulata	3861737
TA15250	mRNA	TA15250	NC_011099.1	345563	347830	D	TA15250	<345563..>347830	Theileria annulata	3861669
TA15245	mRNA	TA15245	NC_011099.1	348115	350490	D	TA15245	<348115..>350490	Theileria annulata	3861668
TA15240	mRNA	TA15240	NC_011099.1	350866	351582	R	TA15240	complement(join(<350866..351259,351296..351350,351386..351521,351553..>351582))	Theileria annulata	3861667
TA15235	mRNA	TA15235	NC_011099.1	351786	352166	R	TA15235	complement(<351786..>352166)	Theileria annulata	3861666
TA15230	mRNA	TA15230	NC_011099.1	352573	354622	R	TA15230	complement(join(<352573..353360,353597..354481,354613..>354622))	Theileria annulata	3861665
TA15225	mRNA	TA15225	NC_011099.1	356010	356636	R	TA15225	complement(<356010..>356636)	Theileria annulata	3861664
TA15215	mRNA	TA15215	NC_011099.1	356966	357597	R	TA15215	complement(join(<356966..357235,357376..>357597))	Theileria annulata	3861662
TA15210	mRNA	TA15210	NC_011099.1	358212	358778	D	TA15210	<358212..>358778	Theileria annulata	3861661
TA15205	mRNA	TA15205	NC_011099.1	359799	364879	R	TA15205	complement(join(<359799..364795,364870..>364879))	Theileria annulata	3861660
TA15200	mRNA	TA15200	NC_011099.1	365404	366290	D	TA15200	join(<365404..365406,365478..365829,365977..>366290)	Theileria annulata	3861659
TA15195	mRNA	TA15195	NC_011099.1	366344	367394	R	TA15195	complement(join(<366344..366577,366664..366858,367017..>367394))	Theileria annulata	3861658
TA15190	mRNA	TA15190	NC_011099.1	367439	368819	R	TA15190	complement(join(<367439..367545,367614..367731,367955..367994,368028..368088,368172..368495,368801..>368819))	Theileria annulata	3861657
TA15185	mRNA	TA15185	NC_011099.1	368956	370282	R	TA15185	complement(join(<368956..369131,369247..369932,369969..>370282))	Theileria annulata	3861656
TA15180	mRNA	TA15180	NC_011099.1	371425	382566	R	TA15180	complement(<371425..>382566)	Theileria annulata	3861655
TA15175	mRNA	TA15175	NC_011099.1	382940	384091	R	TA15175	complement(<382940..>384091)	Theileria annulata	3861654
TA15170	mRNA	TA15170	NC_011099.1	384335	384583	R	TA15170	complement(<384335..>384583)	Theileria annulata	3861653
TA15165	mRNA	TA15165	NC_011099.1	385943	388437	R	TA15165	complement(join(<385943..386463,386704..387140,387269..387444,387638..387690,387787..388306,388375..>388437))	Theileria annulata	3861652
TA15160	mRNA	TA15160	NC_011099.1	388644	389735	D	TA15160	<388644..>389735	Theileria annulata	3861651
TA15155	mRNA	TA15155	NC_011099.1	390118	391194	D	TA15155	<390118..>391194	Theileria annulata	3861650
TA15150	mRNA	TA15150	NC_011099.1	391394	391615	D	TA15150	<391394..>391615	Theileria annulata	3862203
TA15145	mRNA	TA15145	NC_011099.1	392090	393576	R	TA15145	complement(join(<392090..392823,392898..>393576))	Theileria annulata	3862202
TA15140	mRNA	TA15140	NC_011099.1	394105	394857	D	TA15140	<394105..>394857	Theileria annulata	3862201
TA15135	mRNA	TA15135	NC_011099.1	394893	395832	D	TA15135	join(<394893..395121,395169..395248,395281..395362,395529..395664,395724..>395832)	Theileria annulata	3862200
TA15130	mRNA	TA15130	NC_011099.1	395899	396480	R	TA15130	complement(join(<395899..396051,396214..>396480))	Theileria annulata	3862199
TA15125	mRNA	TA15125	NC_011099.1	396787	404127	R	TA15125	complement(<396787..>404127)	Theileria annulata	3862198
TA15120	mRNA	TA15120	NC_011099.1	404320	405546	D	TA15120	join(<404320..404709,404818..>405546)	Theileria annulata	3862197
TA15110	mRNA	TA15110	NC_011099.1	405559	407643	R	TA15110	complement(<405559..>407643)	Theileria annulata	3862195
TA15105	mRNA	TA15105	NC_011099.1	407852	408732	R	TA15105	complement(join(<407852..408056,408170..408256,408287..408467,408543..>408732))	Theileria annulata	3862194
TA15100	mRNA	TA15100	NC_011099.1	408933	409517	D	TA15100	<408933..>409517	Theileria annulata	3862193
TA15095	mRNA	TA15095	NC_011099.1	409569	410723	R	TA15095	complement(<409569..>410723)	Theileria annulata	3862192
TA15090	mRNA	TA15090	NC_011099.1	411068	412205	D	TA15090	join(<411068..411081,411128..>412205)	Theileria annulata	3862191
TA15085	mRNA	TA15085	NC_011099.1	412326	415081	R	TA15085	complement(join(<412326..414151,414283..>415081))	Theileria annulata	3862190
TA15080	mRNA	TA15080	NC_011099.1	415099	415757	R	TA15080	complement(join(<415099..415581,415734..>415757))	Theileria annulata	3862189
TA15075	mRNA	TA15075	NC_011099.1	415799	417052	R	TA15075	complement(join(<415799..415926,415975..416316,416365..416545,416641..416740,416776..416909,416999..>417052))	Theileria annulata	3862188
TA15070	mRNA	TA15070	NC_011099.1	417503	417748	D	TA15070	<417503..>417748	Theileria annulata	3862187
TA15065	mRNA	TA15065	NC_011099.1	417880	418794	R	TA15065	complement(join(<417880..418634,418788..>418794))	Theileria annulata	3862186
TA15055	mRNA	TA15055	NC_011099.1	419226	421054	D	TA15055	join(<419226..419435,419548..419762,419828..420237,420288..>421054)	Theileria annulata	3862223
TA15050	mRNA	TA15050	NC_011099.1	421117	422664	R	TA15050	complement(<421117..>422664)	Theileria annulata	3862222
TA15045	mRNA	TA15045	NC_011099.1	422852	423381	R	TA15045	complement(join(<422852..423022,423088..423194,423357..>423381))	Theileria annulata	3862221
TA15040	mRNA	TA15040	NC_011099.1	423731	424639	D	TA15040	join(<423731..423794,423871..423993,424066..424127,424159..424281,424311..424486,424534..>424639)	Theileria annulata	3862220
TA15035	mRNA	TA15035	NC_011099.1	424709	431673	D	TA15035	join(<424709..429625,429700..429813,429910..430036,430106..430601,430652..431258,431336..431411,431456..>431673)	Theileria annulata	3862219
TA15030	mRNA	TA15030	NC_011099.1	431751	432414	D	TA15030	join(<431751..431897,431930..432068,432098..>432414)	Theileria annulata	3862218
TA15025	mRNA	TA15025	NC_011099.1	432645	433166	D	TA15025	<432645..>433166	Theileria annulata	3862217
TA15020	mRNA	TA15020	NC_011099.1	433250	435954	D	TA15020	join(<433250..433740,433777..434682,434852..434889,435020..>435954)	Theileria annulata	3862216
TA15015	mRNA	TA15015	NC_011099.1	436106	438702	R	TA15015	complement(join(<436106..437542,437602..437763,437836..>438702))	Theileria annulata	3862215
TA15010	mRNA	TA15010	NC_011099.1	438679	440750	D	TA15010	join(<438679..438687,438736..439512,439565..439992,440030..>440750)	Theileria annulata	3862214
TA14995	mRNA	TA14995	NC_011099.1	440812	441330	D	TA14995	<440812..>441330	Theileria annulata	3862211
TA14990	mRNA	TA14990	NC_011099.1	441402	445534	R	TA14990	complement(join(<441402..442600,442698..445108,445220..445292,445360..>445534))	Theileria annulata	3862210
TA14985	mRNA	TA14985	NC_011099.1	446213	450149	D	TA14985	join(<446213..446644,446794..447023,447129..447198,447267..447631,447794..447836,447914..448316,448404..449156,449332..449508,449641..>450149)	Theileria annulata	3862209
TA14980	mRNA	TA14980	NC_011099.1	450305	451765	R	TA14980	complement(join(<450305..450631,450794..>451765))	Theileria annulata	3862208
TA14975	mRNA	TA14975	NC_011099.1	451978	453730	D	TA14975	join(<451978..452100,452229..452642,452757..453086,453151..453477,453587..>453730)	Theileria annulata	3862207
TA14970	mRNA	TA14970	NC_011099.1	454242	454903	D	TA14970	join(<454242..454257,454292..454375,454469..454553,454621..>454903)	Theileria annulata	3862206
TA14965	mRNA	TA14965	NC_011099.1	455241	456733	R	TA14965	complement(join(<455241..455455,455557..455667,455717..455816,455960..456078,456158..456371,456503..>456733))	Theileria annulata	3862205
TA14960	mRNA	TA14960	NC_011099.1	458320	459934	D	TA14960	join(<458320..458540,458658..458891,458918..459028,459157..459226,459388..459561,459686..>459934)	Theileria annulata	3862204
TA14955	mRNA	TA14955	NC_011099.1	460695	478121	D	TA14955	<460695..>478121	Theileria annulata	3862242
TA14950	mRNA	TA14950	NC_011099.1	478628	480322	D	TA14950	join(<478628..479963,480000..>480322)	Theileria annulata	3862241
TA14945	mRNA	TA14945	NC_011099.1	480869	482779	D	TA14945	<480869..>482779	Theileria annulata	3862240
TA14940	mRNA	TA14940	NC_011099.1	483065	484356	D	TA14940	join(<483065..483145,483215..483355,483473..483607,483680..483775,483827..483915,483945..484092,484123..>484356)	Theileria annulata	3862239
TA14935	mRNA	TA14935	NC_011099.1	484707	485045	D	TA14935	<484707..>485045	Theileria annulata	3862238
TA14930	mRNA	TA14930	NC_011099.1	485111	486228	R	TA14930	complement(join(<485111..485289,485344..485411,485483..>486228))	Theileria annulata	3862237
TA14925	mRNA	TA14925	NC_011099.1	486279	486846	R	TA14925	complement(join(<486279..486348,486411..486486,486555..486582,486616..>486846))	Theileria annulata	3862236
TA14920	mRNA	TA14920	NC_011099.1	487582	489627	D	TA14920	<487582..>489627	Theileria annulata	3862235
TA14915	mRNA	TA14915	NC_011099.1	489700	491271	R	TA14915	complement(<489700..>491271)	Theileria annulata	3862234
TA14910	mRNA	TA14910	NC_011099.1	491316	491669	R	TA14910	complement(<491316..>491669)	Theileria annulata	3862233
TA14905	mRNA	TA14905	NC_011099.1	492253	493814	D	TA14905	join(<492253..492320,492398..492552,492585..492745,492776..492874,492910..493090,493120..493332,493405..>493814)	Theileria annulata	3862232
TA14900	mRNA	TA14900	NC_011099.1	493920	499052	R	TA14900	complement(join(<493920..493964,493994..494069,494100..494281,494310..494387,494451..494637,494695..>499052))	Theileria annulata	3862231
TA14885	mRNA	TA14885	NC_011099.1	500033	501613	D	TA14885	<500033..>501613	Theileria annulata	3862228
TA14880	mRNA	TA14880	NC_011099.1	501775	503985	R	TA14880	complement(join(<501775..502013,502052..502252,502311..>503985))	Theileria annulata	3862227
TA14875	mRNA	TA14875	NC_011099.1	504299	505166	D	TA14875	join(<504299..504383,504502..504541,504605..504683,504720..>505166)	Theileria annulata	3862226
TA14870	mRNA	TA14870	NC_011099.1	505174	506184	R	TA14870	complement(join(<505174..505531,505570..505882,505938..>506184))	Theileria annulata	3862225
TA14865	mRNA	TA14865	NC_011099.1	506364	507941	R	TA14865	complement(join(<506364..506469,506499..506653,506732..507513,507545..>507941))	Theileria annulata	3862224
TA14860	mRNA	TA14860	NC_011099.1	508415	509641	D	TA14860	join(<508415..508501,508545..509058,509108..509215,509279..509458,509505..>509641)	Theileria annulata	3862302
TA14855	mRNA	TA14855	NC_011099.1	509790	510584	R	TA14855	complement(join(<509790..510031,510082..510227,510304..510440,510561..>510584))	Theileria annulata	3862301
TA14850	mRNA	TA14850	NC_011099.1	510699	511760	D	TA14850	join(<510699..510811,510843..511408,511467..511529,511561..>511760)	Theileria annulata	3862300
TA14845	mRNA	TA14845	NC_011099.1	512869	513597	D	TA14845	<512869..>513597	Theileria annulata	3862299
TA14840	mRNA	TA14840	NC_011099.1	514435	516561	R	TA14840	complement(join(<514435..514646,514759..515119,515242..515478,515506..>516561))	Theileria annulata	3862298
TA14835	mRNA	TA14835	NC_011099.1	516786	518138	R	TA14835	complement(<516786..>518138)	Theileria annulata	3862297
TA14830	mRNA	TA14830	NC_011099.1	518552	522027	D	TA14830	join(<518552..518657,518708..519032,519104..519380,519454..520683,520761..521000,521105..521270,521341..521459,521510..521641,521719..521904,521938..>522027)	Theileria annulata	3862296
TA14825	mRNA	TA14825	NC_011099.1	522433	525145	D	TA14825	join(<522433..522537,522598..522861,522921..523628,523661..524172,524254..524560,524690..524891,525012..>525145)	Theileria annulata	3862295
TA14820	mRNA	TA14820	NC_011099.1	525904	526777	D	TA14820	join(<525904..526011,526058..526195,526228..526346,526378..526678,526730..>526777)	Theileria annulata	3862294
TA14815	mRNA	TA14815	NC_011099.1	526814	528175	D	TA14815	join(<526814..526917,526951..527054,527147..527231,527267..527339,527369..527435,527465..527507,527537..527633,527663..527779,527812..527896,527965..528048,528078..>528175)	Theileria annulata	3862293
TA14810	mRNA	TA14810	NC_011099.1	528205	529687	R	TA14810	complement(join(<528205..529226,529288..>529687))	Theileria annulata	3862292
TA14805	mRNA	TA14805	NC_011099.1	530047	533037	R	TA14805	complement(join(<530047..530343,530380..530497,530588..532621,532672..532888,532977..>533037))	Theileria annulata	3862291
TA14800	mRNA	TA14800	NC_011099.1	533239	533654	R	TA14800	complement(join(<533239..533409,533473..533612,533645..>533654))	Theileria annulata	3862290
TA14795	mRNA	TA14795	NC_011099.1	534136	535747	D	TA14795	join(<534136..534532,534570..534796,534830..534925,534958..535152,535188..535251,535291..535462,535494..535557,535595..>535747)	Theileria annulata	3862289
TA14790	mRNA	TA14790	NC_011099.1	535845	537260	R	TA14790	complement(<535845..>537260)	Theileria annulata	3862288
TA14780	mRNA	TA14780	NC_011099.1	538635	539019	D	TA14780	join(<538635..538651,538684..538746,538779..538855,538901..538932,538969..>539019)	Theileria annulata	3862286
TA14775	mRNA	TA14775	NC_011099.1	539373	541167	D	TA14775	join(<539373..539503,539535..539716,539757..539867,539905..539969,540037..540376,540406..540494,540533..540610,540652..>541167)	Theileria annulata	3862285
TA14770	mRNA	TA14770	NC_011099.1	541241	544163	R	TA14770	complement(join(<541241..542770,542837..542962,543025..543372,543426..543796,543836..>544163))	Theileria annulata	3862284
TA14765	mRNA	TA14765	NC_011099.1	545584	546201	D	TA14765	join(<545584..546030,546091..>546201)	Theileria annulata	3862283
TA14760	mRNA	TA14760	NC_011099.1	546334	546819	D	TA14760	join(<546334..546412,546470..546596,546627..>546819)	Theileria annulata	3862352
TA14755	mRNA	TA14755	NC_011099.1	546909	548762	R	TA14755	complement(<546909..>548762)	Theileria annulata	3862351
TA14750	mRNA	TA14750	NC_011099.1	548893	549737	R	TA14750	complement(join(<548893..549147,549429..>549737))	Theileria annulata	3862350
TA14745	mRNA	TA14745	NC_011099.1	550668	551840	D	TA14745	<550668..>551840	Theileria annulata	3862349
TA14740	mRNA	TA14740	NC_011099.1	551973	552830	R	TA14740	complement(<551973..>552830)	Theileria annulata	3862348
TA14735	mRNA	TA14735	NC_011099.1	553191	554087	R	TA14735	complement(join(<553191..553345,553454..553564,553704..553808,554009..>554087))	Theileria annulata	3862347
TA14720	mRNA	TA14720	NC_011099.1	555135	557118	D	TA14720	join(<555135..555232,555372..555519,555589..>557118)	Theileria annulata	3862344
TA14715	mRNA	TA14715	NC_011099.1	557267	557775	R	TA14715	complement(join(<557267..557326,557356..>557775))	Theileria annulata	3862343
TA14710	mRNA	TA14710	NC_011099.1	557829	559579	R	TA14710	complement(join(<557829..558067,558097..558517,558583..559082,559131..559298,559393..>559579))	Theileria annulata	3862342
TA14705	mRNA	TA14705	NC_011099.1	560109	561023	D	TA14705	join(<560109..560284,560318..560530,560560..560748,560779..560820,560850..560906,560936..>561023)	Theileria annulata	3862341
TA14700	mRNA	TA14700	NC_011099.1	561134	562014	R	TA14700	complement(join(<561134..561306,561402..561559,561701..561851,561930..>562014))	Theileria annulata	3862340
TA14695	mRNA	TA14695	NC_011099.1	562213	564249	D	TA14695	join(<562213..562333,562368..562569,562599..562890,562936..563009,563039..563236,563265..563395,563451..563551,563581..563660,563693..563820,563885..563976,564016..>564249)	Theileria annulata	3862339
TA14690	mRNA	TA14690	NC_011099.1	564287	564764	D	TA14690	join(<564287..564347,564380..564558,564588..>564764)	Theileria annulata	3862338
TA14685	mRNA	TA14685	NC_011099.1	564796	566151	D	TA14685	<564796..>566151	Theileria annulata	3862337
TA14680	mRNA	TA14680	NC_011099.1	566479	576060	R	TA14680	complement(<566479..>576060)	Theileria annulata	3862336
TA14675	mRNA	TA14675	NC_011099.1	576682	577734	R	TA14675	complement(<576682..>577734)	Theileria annulata	3862335
TA14665	mRNA	TA14665	NC_011099.1	578923	590685	D	TA14665	<578923..>590685	Theileria annulata	3862392
TA14660	mRNA	TA14660	NC_011099.1	590865	591431	R	TA14660	complement(join(<590865..591122,591177..>591431))	Theileria annulata	3862391
TA14655	mRNA	TA14655	NC_011099.1	591735	593756	D	TA14655	join(<591735..591882,591941..592250,592321..592492,592557..592710,592740..592954,593011..593132,593201..593260,593296..593392,593459..593578,593619..>593756)	Theileria annulata	3862390
TA14650	mRNA	TA14650	NC_011099.1	594494	596934	D	TA14650	join(<594494..594949,595066..>596934)	Theileria annulata	3862389
TA14645	mRNA	TA14645	NC_011099.1	597170	599065	D	TA14645	<597170..>599065	Theileria annulata	3862388
TA14640	mRNA	TA14640	NC_011099.1	599403	599832	D	TA14640	join(<599403..599469,599651..>599832)	Theileria annulata	3862387
TA14635	mRNA	TA14635	NC_011099.1	600541	601710	D	TA14635	join(<600541..600661,600704..600870,600993..601252,601325..601545,601640..>601710)	Theileria annulata	3862386
TA14630	mRNA	TA14630	NC_011099.1	601792	602703	R	TA14630	complement(join(<601792..601861,601969..602097,602197..602386,602466..>602703))	Theileria annulata	3862385
TA14625	mRNA	TA14625	NC_011099.1	602978	604696	D	TA14625	<602978..>604696	Theileria annulata	3862384
TA14620	mRNA	TA14620	NC_011099.1	605092	606945	D	TA14620	join(<605092..606063,606096..606437,606592..>606945)	Theileria annulata	3862383
TA14615	mRNA	TA14615	NC_011099.1	606985	608023	R	TA14615	complement(join(<606985..607264,607320..607497,607604..607687,607747..>608023))	Theileria annulata	3862382
TA14610	mRNA	TA14610	NC_011099.1	608318	610496	D	TA14610	join(<608318..608865,608937..609114,609181..609261,609331..609429,609496..609577,609643..609744,609817..>610496)	Theileria annulata	3862381
TA14605	mRNA	TA14605	NC_011099.1	611011	612465	R	TA14605	complement(<611011..>612465)	Theileria annulata	3862380
TA14600	mRNA	TA14600	NC_011099.1	612683	613495	R	TA14600	complement(join(<612683..612873,612956..613183,613348..>613495))	Theileria annulata	3862379
TA14595	mRNA	TA14595	NC_011099.1	614263	614937	D	TA14595	<614263..>614937	Theileria annulata	3862378
TA14590	mRNA	TA14590	NC_011099.1	615139	619091	D	TA14590	join(<615139..615271,615369..615565,615728..615958,616033..616217,616340..616673,616730..616912,616984..617127,617195..617368,617494..617770,617806..618122,618208..618930,618966..>619091)	Theileria annulata	3862377
TA14585	mRNA	TA14585	NC_011099.1	619146	621772	D	TA14585	join(<619146..619430,619520..619612,619762..619839,619904..620084,620175..620274,620353..620805,620880..620955,620984..621100,621135..621230,621373..621446,621477..621557,621619..>621772)	Theileria annulata	3862376
TA14580	mRNA	TA14580	NC_011099.1	621945	622916	R	TA14580	complement(<621945..>622916)	Theileria annulata	3862375
TA14575	mRNA	TA14575	NC_011099.1	623175	624563	D	TA14575	join(<623175..623401,623465..623565,623594..623804,623875..624014,624079..624267,624298..>624563)	Theileria annulata	3862374
TA14570	mRNA	TA14570	NC_011099.1	624934	626879	D	TA14570	join(<624934..625070,625199..625576,625607..625815,625960..>626879)	Theileria annulata	3862373
TA14560	mRNA	TA14560	NC_011099.1	626930	628847	R	TA14560	complement(join(<626930..627215,627246..627461,627519..627957,628009..628474,628505..628603,628635..>628847))	Theileria annulata	3862506
TA14555	mRNA	TA14555	NC_011099.1	629187	630847	D	TA14555	join(<629187..629341,629417..629722,629789..630145,630212..630384,630427..630671,630707..>630847)	Theileria annulata	3862505
TA14550	mRNA	TA14550	NC_011099.1	631154	632078	R	TA14550	complement(join(<631154..631330,631364..631445,631517..631617,631649..631714,631754..631838,631903..>632078))	Theileria annulata	3862504
TA14545	mRNA	TA14545	NC_011099.1	632176	633521	D	TA14545	join(<632176..632302,632338..632592,632685..632933,633001..>633521)	Theileria annulata	3862503
TA14540	mRNA	TA14540	NC_011099.1	633634	635874	R	TA14540	complement(<633634..>635874)	Theileria annulata	3862502
TA14535	mRNA	TA14535	NC_011099.1	636057	637699	R	TA14535	complement(join(<636057..636748,636818..636882,636944..637171,637229..637362,637456..637514,637588..>637699))	Theileria annulata	3862501
TA14530	mRNA	TA14530	NC_011099.1	638385	638615	R	TA14530	complement(<638385..>638615)	Theileria annulata	3862500
TA14525	mRNA	TA14525	NC_011099.1	638851	639882	R	TA14525	complement(join(<638851..639026,639097..639239,639288..639430,639480..639553,639613..639678,639728..639818,639853..>639882))	Theileria annulata	3862499
TA14520	mRNA	TA14520	NC_011099.1	640053	641555	R	TA14520	complement(join(<640053..640487,640525..640601,640665..640734,640765..640883,640952..641071,641136..641275,641434..>641555))	Theileria annulata	3862498
TA14515	mRNA	TA14515	NC_011099.1	641841	643712	R	TA14515	complement(<641841..>643712)	Theileria annulata	3862497
TA14500	mRNA	TA14500	NC_011099.1	644074	647117	D	TA14500	join(<644074..644583,644636..645525,645557..646552,646609..646893,646937..>647117)	Theileria annulata	3862494
TA14495	mRNA	TA14495	NC_011099.1	647253	648578	R	TA14495	complement(<647253..>648578)	Theileria annulata	3862493
TA14490	mRNA	TA14490	NC_011099.1	649000	650705	R	TA14490	complement(join(<649000..649688,649775..>650705))	Theileria annulata	3862492
TA14485	mRNA	TA14485	NC_011099.1	650957	652522	R	TA14485	complement(<650957..>652522)	Theileria annulata	3862491
TA14480	mRNA	TA14480	NC_011099.1	652954	655000	R	TA14480	complement(join(<652954..653076,653107..653175,653335..654122,654187..654271,654301..654393,654505..654600,654648..654802,654904..>655000))	Theileria annulata	3862490
TA14475	mRNA	TA14475	NC_011099.1	655182	656680	D	TA14475	join(<655182..655410,655467..655877,655934..656204,656236..>656680)	Theileria annulata	3862489
TA14470	mRNA	TA14470	NC_011099.1	656767	658551	R	TA14470	complement(join(<656767..657402,657448..657703,657779..657867,657923..658016,658077..658167,658214..658444,658509..>658551))	Theileria annulata	3862184
TA14465	mRNA	TA14465	NC_011099.1	658855	659985	D	TA14465	join(<658855..659044,659127..659234,659278..659462,659495..659636,659718..659809,659875..>659985)	Theileria annulata	3862183
TA14455	mRNA	TA14455	NC_011099.1	660978	663973	R	TA14455	complement(join(<660978..661091,661122..661256,661301..661375,661423..661548,661608..661793,661835..662293,662338..662744,662803..663035,663102..663307,663338..663487,663541..663701,663737..663827,663890..>663973))	Theileria annulata	3862182
TA14450	mRNA	TA14450	NC_011099.1	664036	666248	R	TA14450	complement(join(<664036..664262,664333..664710,664774..664864,664923..>666248))	Theileria annulata	3862181
TA14445	mRNA	TA14445	NC_011099.1	666626	667371	R	TA14445	complement(join(<666626..666843,666927..>667371))	Theileria annulata	3862180
TA14440	mRNA	TA14440	NC_011099.1	667393	668191	R	TA14440	complement(join(<667393..667500,667564..667689,667743..667832,667899..668027,668075..>668191))	Theileria annulata	3862179
TA14435	mRNA	TA14435	NC_011099.1	668542	671974	D	TA14435	join(<668542..669964,670023..>671974)	Theileria annulata	3862178
TA14430	mRNA	TA14430	NC_011099.1	672179	673344	D	TA14430	join(<672179..672280,672311..672536,672608..672762,672797..672855,672885..>673344)	Theileria annulata	3862177
TA14425	mRNA	TA14425	NC_011099.1	673411	676638	R	TA14425	complement(join(<673411..674028,674100..674243,674276..674479,674536..674891,674939..675416,675469..675910,675942..676093,676125..676390,676449..>676638))	Theileria annulata	3862176
TA14420	mRNA	TA14420	NC_011099.1	676821	678153	D	TA14420	join(<676821..676882,676925..677086,677117..677228,677263..677375,677407..677484,677526..677624,677676..677799,677833..677910,677944..>678153)	Theileria annulata	3862175
TA14415	mRNA	TA14415	NC_011099.1	678797	680007	R	TA14415	complement(join(<678797..678920,678983..>680007))	Theileria annulata	3862174
TA14410	mRNA	TA14410	NC_011099.1	680209	681422	R	TA14410	complement(join(<680209..680332,680398..>681422))	Theileria annulata	3862173
TA14405	mRNA	TA14405	NC_011099.1	681624	682845	R	TA14405	complement(join(<681624..681747,681812..>682845))	Theileria annulata	3862172
TA14390	mRNA	TA14390	NC_011099.1	683403	684603	R	TA14390	complement(join(<683403..683511,683576..>684603))	Theileria annulata	3862169
TA14385	mRNA	TA14385	NC_011099.1	684805	686018	R	TA14385	complement(join(<684805..684928,684991..>686018))	Theileria annulata	3862168
TA14380	mRNA	TA14380	NC_011099.1	686223	687456	R	TA14380	complement(join(<686223..686343,686408..>687456))	Theileria annulata	3862167
TA14375	mRNA	TA14375	NC_011099.1	687923	689122	R	TA14375	complement(join(<687923..688031,688101..>689122))	Theileria annulata	3862166
TA14370	mRNA	TA14370	NC_011099.1	689455	690334	R	TA14370	complement(join(<689455..690029,690124..>690334))	Theileria annulata	3862165
TA14365	mRNA	TA14365	NC_011099.1	690424	691654	D	TA14365	join(<690424..690498,690701..690739,690795..690974,691019..691128,691181..691269,691308..>691654)	Theileria annulata	3861649
TA14360	mRNA	TA14360	NC_011099.1	691850	693358	D	TA14360	join(<691850..692065,692165..692258,692289..>693358)	Theileria annulata	3861648
TA14355	mRNA	TA14355	NC_011099.1	693405	694091	D	TA14355	<693405..>694091	Theileria annulata	3861647
TA14350	mRNA	TA14350	NC_011099.1	694144	697730	R	TA14350	complement(join(<694144..694297,694326..694439,694471..694613,694646..694716,694771..694951,694983..696632,696664..696731,696763..696841,696881..696939,696980..697085,697115..697263,697314..697447,697490..697621,697657..>697730))	Theileria annulata	3861646
TA14345	mRNA	TA14345	NC_011099.1	698100	698842	R	TA14345	complement(join(<698100..698335,698369..698619,698676..>698842))	Theileria annulata	3861645
TA14340	mRNA	TA14340	NC_011099.1	698985	700137	R	TA14340	complement(join(<698985..699222,699254..699318,699367..>700137))	Theileria annulata	3861644
TA14335	mRNA	TA14335	NC_011099.1	700391	701285	R	TA14335	complement(join(<700391..700641,700671..700748,700810..701085,701117..701222,701253..>701285))	Theileria annulata	3861643
TA14330	mRNA	TA14330	NC_011099.1	701439	702655	R	TA14330	complement(join(<701439..701540,701611..701862,701912..>702655))	Theileria annulata	3861642
TA14325	mRNA	TA14325	NC_011099.1	703080	704138	R	TA14325	complement(join(<703080..703868,703899..>704138))	Theileria annulata	3861641
TA14320	mRNA	TA14320	NC_011099.1	704682	706272	D	TA14320	join(<704682..704763,704798..704979,705021..705179,705212..705943,706009..706065,706099..>706272)	Theileria annulata	3861640
TA14315	mRNA	TA14315	NC_011099.1	706339	706727	R	TA14315	complement(join(<706339..706646,706676..>706727))	Theileria annulata	3861639
TA14310	mRNA	TA14310	NC_011099.1	706874	707380	R	TA14310	complement(<706874..>707380)	Theileria annulata	3861638
TA14305	mRNA	TA14305	NC_011099.1	707504	708100	R	TA14305	complement(join(<707504..707703,707745..707937,707969..>708100))	Theileria annulata	3861637
TA14300	mRNA	TA14300	NC_011099.1	708116	709784	R	TA14300	complement(join(<708116..708250,708310..708380,708447..708558,708614..708818,708868..708994,709028..709142,709181..709329,709399..709447,709525..709602,709656..>709784))	Theileria annulata	3861636
TA14295	mRNA	TA14295	NC_011099.1	709937	711887	D	TA14295	join(<709937..709953,709989..710019,710050..710152,710198..710348,710379..710455,710517..710836,710902..711312,711369..>711887)	Theileria annulata	3861635
TA14285	mRNA	TA14285	NC_011099.1	712273	714393	R	TA14285	complement(<712273..>714393)	Theileria annulata	3861633
TA14280	mRNA	TA14280	NC_011099.1	715479	716354	R	TA14280	complement(join(<715479..715562,715594..715694,715724..715955,716046..>716354))	Theileria annulata	3861632
TA14275	mRNA	TA14275	NC_011099.1	716429	719681	R	TA14275	complement(join(<716429..716747,716797..717119,717171..717290,717322..717566,717604..718024,718104..718253,718313..718431,718463..718921,718978..719158,719241..>719681))	Theileria annulata	3861631
TA14270	mRNA	TA14270	NC_011099.1	720025	720737	D	TA14270	join(<720025..720165,720213..>720737)	Theileria annulata	3862106
TA14265	mRNA	TA14265	NC_011099.1	720916	721897	R	TA14265	complement(join(<720916..721031,721063..721139,721169..721386,721492..721579,721692..721735,721775..>721897))	Theileria annulata	3862105
TA14260	mRNA	TA14260	NC_011099.1	722242	723565	R	TA14260	complement(join(<722242..722523,722555..722662,722732..723012,723042..723138,723171..723273,723316..723416,723470..>723565))	Theileria annulata	3862104
TA14255	mRNA	TA14255	NC_011099.1	723598	724825	R	TA14255	complement(join(<723598..723669,723723..724018,724090..724215,724369..724491,724525..>724825))	Theileria annulata	3862103
TA14250	mRNA	TA14250	NC_011099.1	725171	727324	D	TA14250	join(<725171..726457,726524..>727324)	Theileria annulata	3862102
TA14245	mRNA	TA14245	NC_011099.1	727311	729905	R	TA14245	complement(<727311..>729905)	Theileria annulata	3862101
TA14240	mRNA	TA14240	NC_011099.1	730089	732014	D	TA14240	join(<730089..730782,730950..731182,731252..731492,731652..731753,731781..731890,731928..>732014)	Theileria annulata	3862100
TA14230	mRNA	TA14230	NC_011099.1	732165	732816	D	TA14230	join(<732165..732497,732640..>732816)	Theileria annulata	3862098
TA14225	mRNA	TA14225	NC_011099.1	733285	734931	D	TA14225	join(<733285..733293,733327..733449,733534..733738,733861..734040,734196..734287,734325..734407,734572..734653,734704..>734931)	Theileria annulata	3862097
TA14220	mRNA	TA14220	NC_011099.1	735068	736241	R	TA14220	complement(join(<735068..735349,735468..735581,735876..736020,736138..>736241))	Theileria annulata	3862096
TA14215	mRNA	TA14215	NC_011099.1	736468	741343	D	TA14215	join(<736468..736550,736746..737005,737130..737318,737386..737439,737577..738194,738249..739439,739499..740790,740891..741036,741124..>741343)	Theileria annulata	3862095
TA14210	mRNA	TA14210	NC_011099.1	741521	742305	D	TA14210	join(<741521..741850,741943..>742305)	Theileria annulata	3862094
TA14205	mRNA	TA14205	NC_011099.1	742730	745062	D	TA14205	join(<742730..742765,742801..>745062)	Theileria annulata	3862093
TA14200	mRNA	TA14200	NC_011099.1	745143	748329	R	TA14200	complement(join(<745143..745896,746087..747188,747346..747537,747597..>748329))	Theileria annulata	3862092
TA14195	mRNA	TA14195	NC_011099.1	748575	749635	R	TA14195	complement(join(<748575..749111,749141..749227,749339..749490,749521..>749635))	Theileria annulata	3862091
TA14190	mRNA	TA14190	NC_011099.1	750312	750622	D	TA14190	join(<750312..750360,750429..>750622)	Theileria annulata	3862090
TA14185	mRNA	TA14185	NC_011099.1	751127	752766	D	TA14185	join(<751127..751231,751300..751468,751568..751633,751713..752553,752697..>752766)	Theileria annulata	3862089
TA14165	mRNA	TA14165	NC_011099.1	753196	753411	D	TA14165	<753196..>753411	Theileria annulata	3861611
TA14160	mRNA	TA14160	NC_011099.1	753808	753963	D	TA14160	<753808..>753963	Theileria annulata	3861610
TA14155	mRNA	TA14155	NC_011099.1	754392	755138	D	TA14155	join(<754392..754470,754759..>755138)	Theileria annulata	3861609
TA14150	mRNA	TA14150	NC_011099.1	755489	756105	D	TA14150	join(<755489..755782,755971..>756105)	Theileria annulata	3861608
TA14145	mRNA	TA14145	NC_011099.1	756236	757216	D	TA14145	join(<756236..756256,756269..756339,756396..756449,756481..756629,756749..756909,757079..>757216)	Theileria annulata	3861607
TA14140	mRNA	TA14140	NC_011099.1	757381	758454	R	TA14140	complement(<757381..>758454)	Theileria annulata	3861606
TA14135	mRNA	TA14135	NC_011099.1	758548	759276	R	TA14135	complement(<758548..>759276)	Theileria annulata	3861605
TA14130	mRNA	TA14130	NC_011099.1	759322	761467	R	TA14130	complement(join(<759322..760387,760469..760761,760812..761373,761430..>761467))	Theileria annulata	3861604
TA14125	mRNA	TA14125	NC_011099.1	761846	763239	D	TA14125	join(<761846..762457,762490..>763239)	Theileria annulata	3861603
TA14120	mRNA	TA14120	NC_011099.1	763261	764820	R	TA14120	complement(<763261..>764820)	Theileria annulata	3861602
TA14115	mRNA	TA14115	NC_011099.1	764908	766071	R	TA14115	complement(join(<764908..765148,765251..765420,765521..765724,765822..765904,765999..>766071))	Theileria annulata	3861601
TA14110	mRNA	TA14110	NC_011099.1	766731	767078	D	TA14110	<766731..>767078	Theileria annulata	3861600
TA14105	mRNA	TA14105	NC_011099.1	767535	768894	R	TA14105	complement(join(<767535..767690,767755..767873,768014..768640,768849..>768894))	Theileria annulata	3861599
TA14100	mRNA	TA14100	NC_011099.1	769265	770439	R	TA14100	complement(join(<769265..769372,769467..769614,769799..769860,769894..>770439))	Theileria annulata	3861598
TA14095	mRNA	TA14095	NC_011099.1	770462	772646	D	TA14095	join(<770462..770531,770572..771294,771408..771553,771679..772129,772174..>772646)	Theileria annulata	3861597
TA14090	mRNA	TA14090	NC_011099.1	772772	773395	R	TA14090	complement(join(<772772..773025,773194..>773395))	Theileria annulata	3861596
TA14085	mRNA	TA14085	NC_011099.1	773480	773740	R	TA14085	complement(<773480..>773740)	Theileria annulata	3861595
TA14080	mRNA	TA14080	NC_011099.1	774033	776051	R	TA14080	complement(join(<774033..774187,774316..774758,774892..>776051))	Theileria annulata	3861594
TA14075	mRNA	TA14075	NC_011099.1	776813	777689	D	TA14075	join(<776813..777155,777247..>777689)	Theileria annulata	3861593
TA14060	mRNA	TA14060	NC_011099.1	777908	779568	D	TA14060	join(<777908..779380,779461..>779568)	Theileria annulata	3861734
TA14055	mRNA	TA14055	NC_011099.1	779700	781296	D	TA14055	join(<779700..779919,780002..780070,780147..780212,780241..780383,780413..780513,780544..780877,780909..780999,781040..>781296)	Theileria annulata	3861733
TA14050	mRNA	TA14050	NC_011099.1	781561	781878	D	TA14050	join(<781561..781663,781697..781732,781787..>781878)	Theileria annulata	3861732
TA14045	mRNA	TA14045	NC_011099.1	781897	783694	R	TA14045	complement(join(<781897..781988,782029..782109,782276..782495,782584..783369,783403..783630,783692..>783694))	Theileria annulata	3861731
TA14040	mRNA	TA14040	NC_011099.1	783910	787153	D	TA14040	join(<783910..784380,784411..784521,784552..784673,784736..785510,785541..785666,785697..785974,786009..786120,786152..786228,786258..786792,786848..>787153)	Theileria annulata	3861730
TA14035	mRNA	TA14035	NC_011099.1	787259	788080	R	TA14035	complement(<787259..>788080)	Theileria annulata	3861729
TA14030	mRNA	TA14030	NC_011099.1	788958	792293	D	TA14030	<788958..>792293	Theileria annulata	3861728
TA14025	mRNA	TA14025	NC_011099.1	792617	796123	D	TA14025	<792617..>796123	Theileria annulata	3861727
TA14020	mRNA	TA14020	NC_011099.1	796456	797796	D	TA14020	<796456..>797796	Theileria annulata	3861726
TA14015	mRNA	TA14015	NC_011099.1	797914	801569	D	TA14015	join(<797914..800400,800479..800788,800859..800974,801044..801355,801387..>801569)	Theileria annulata	3861725
TA14010	mRNA	TA14010	NC_011099.1	802152	802681	R	TA14010	complement(join(<802152..802462,802492..>802681))	Theileria annulata	3861724
TA14005	mRNA	TA14005	NC_011099.1	802915	803772	D	TA14005	<802915..>803772	Theileria annulata	3861723
TA14000	mRNA	TA14000	NC_011099.1	803839	804704	R	TA14000	complement(join(<803839..803991,804023..804144,804307..804376,804408..804520,804605..>804704))	Theileria annulata	3861722
TA13995	mRNA	TA13995	NC_011099.1	804823	805782	R	TA13995	complement(join(<804823..804885,805028..805354,805383..805595,805675..>805782))	Theileria annulata	3861721
TA13990	mRNA	TA13990	NC_011099.1	806156	809385	D	TA13990	join(<806156..806564,806616..807971,808011..808430,808479..808952,808987..809019,809141..>809385)	Theileria annulata	3861720
TA13985	mRNA	TA13985	NC_011099.1	809964	811827	D	TA13985	join(<809964..810533,810793..>811827)	Theileria annulata	3861719
TA13980	mRNA	TA13980	NC_011099.1	811911	816454	R	TA13980	complement(join(<811911..812102,812277..812869,813099..813184,813246..813367,813539..813709,814008..814235,814396..815138,815298..815357,815544..815682,815816..815873,815910..>816454))	Theileria annulata	3861718
TA13975	mRNA	TA13975	NC_011099.1	816656	818430	D	TA13975	join(<816656..817097,817325..>818430)	Theileria annulata	3861717
TA13970	mRNA	TA13970	NC_011099.1	818823	822884	R	TA13970	complement(join(<818823..819028,819122..>822884))	Theileria annulata	3861928
TA13965	mRNA	TA13965	NC_011099.1	823238	824494	R	TA13965	complement(<823238..>824494)	Theileria annulata	3861927
TA13950	mRNA	TA13950	NC_011099.1	824888	831264	R	TA13950	complement(join(<824888..826680,826947..827189,827350..829254,829816..830871,831084..>831264))	Theileria annulata	3861924
TA13945	mRNA	TA13945	NC_011099.1	831993	832583	D	TA13945	<831993..>832583	Theileria annulata	3861923
TA13940	mRNA	TA13940	NC_011099.1	832872	835244	D	TA13940	join(<832872..833374,833431..834760,834891..>835244)	Theileria annulata	3861922
TA13935	mRNA	TA13935	NC_011099.1	835719	836341	R	TA13935	complement(join(<835719..835941,836076..>836341))	Theileria annulata	3861921
TA13930	mRNA	TA13930	NC_011099.1	836486	836764	D	TA13930	<836486..>836764	Theileria annulata	3861920
TA13925	mRNA	TA13925	NC_011099.1	836767	837156	D	TA13925	join(<836767..836830,836901..836948,837002..>837156)	Theileria annulata	3861919
TA13920	mRNA	TA13920	NC_011099.1	838034	838453	D	TA13920	join(<838034..838145,838254..>838453)	Theileria annulata	3861918
TA13915	mRNA	TA13915	NC_011099.1	838599	840539	R	TA13915	complement(<838599..>840539)	Theileria annulata	3861917
TA13910	mRNA	TA13910	NC_011099.1	841109	842389	D	TA13910	<841109..>842389	Theileria annulata	3861916
TA13905	mRNA	TA13905	NC_011099.1	843754	846896	D	TA13905	join(<843754..844088,844342..844653,844861..844951,845140..845290,845387..845496,845520..845573,845675..845741,845864..845994,846080..846367,846558..846768,846826..>846896)	Theileria annulata	3861915
TA13895	mRNA	TA13895	NC_011099.1	847017	847673	D	TA13895	join(<847017..847395,847435..>847673)	Theileria annulata	3861913
TA13890	mRNA	TA13890	NC_011099.1	847773	851496	R	TA13890	complement(join(<847773..848390,848489..848715,848783..849538,849630..850205,850304..851059,851202..>851496))	Theileria annulata	3861912
TA13885	mRNA	TA13885	NC_011099.1	852106	852696	D	TA13885	<852106..>852696	Theileria annulata	3861911
TA13880	mRNA	TA13880	NC_011099.1	853067	855468	R	TA13880	complement(join(<853067..853966,854140..854337,854560..854777,855020..855203,855319..>855468))	Theileria annulata	3861910
TA13875	mRNA	TA13875	NC_011099.1	855699	858695	R	TA13875	complement(join(<855699..855890,855996..856141,856352..856511,856637..856897,857102..857192,857476..857852,857901..>858695))	Theileria annulata	3861812
TA13870	mRNA	TA13870	NC_011099.1	859209	860065	R	TA13870	complement(join(<859209..859759,859867..>860065))	Theileria annulata	3861811
TA13865	mRNA	TA13865	NC_011099.1	860455	861484	R	TA13865	complement(join(<860455..860900,861046..>861484))	Theileria annulata	3861810
TA13860	mRNA	TA13860	NC_011099.1	861865	862756	D	TA13860	join(<861865..862259,862339..>862756)	Theileria annulata	3861809
TA13855	mRNA	TA13855	NC_011099.1	862880	865354	R	TA13855	complement(join(<862880..863022,863422..863744,863985..864123,864239..864429,864617..864708,864749..864828,864931..>865354))	Theileria annulata	3861808
TA13850	mRNA	TA13850	NC_011099.1	865453	866100	R	TA13850	complement(join(<865453..865872,866026..>866100))	Theileria annulata	3861807
TA13845	mRNA	TA13845	NC_011099.1	866643	869273	D	TA13845	join(<866643..866965,867290..867828,868221..868399,868628..868906,869061..>869273)	Theileria annulata	3861806
TA13840	mRNA	TA13840	NC_011099.1	869509	870166	R	TA13840	complement(join(<869509..869720,869750..869875,869905..870085,870119..>870166))	Theileria annulata	3861805
TA13835	mRNA	TA13835	NC_011099.1	871141	873724	D	TA13835	join(<871141..871534,871857..873427,873522..873647,873677..>873724)	Theileria annulata	3861804
TA13830	mRNA	TA13830	NC_011099.1	873827	874604	D	TA13830	join(<873827..873865,873895..874248,874281..874381,874411..874530,874568..>874604)	Theileria annulata	3861803
TA13825	mRNA	TA13825	NC_011099.1	875121	875762	D	TA13825	<875121..>875762	Theileria annulata	3861802
TA13820	mRNA	TA13820	NC_011099.1	876151	876750	D	TA13820	<876151..>876750	Theileria annulata	3861801
TA13815	mRNA	TA13815	NC_011099.1	877110	877751	D	TA13815	<877110..>877751	Theileria annulata	3861800
TA13810	mRNA	TA13810	NC_011099.1	877952	878641	D	TA13810	<877952..>878641	Theileria annulata	3861799
TA13805	mRNA	TA13805	NC_011099.1	879945	881790	R	TA13805	complement(join(<879945..880170,880412..881551,881666..>881790))	Theileria annulata	3861798
TA13800	mRNA	TA13800	NC_011099.1	882073	882888	D	TA13800	<882073..>882888	Theileria annulata	3861797
TA13790	mRNA	TA13790	NC_011099.1	882952	884514	R	TA13790	complement(join(<882952..883180,883254..883714,883766..884003,884182..884456,884500..>884514))	Theileria annulata	3861795
TA13785	mRNA	TA13785	NC_011099.1	884680	885198	D	TA13785	join(<884680..884733,884768..884852,884887..884934,885035..>885198)	Theileria annulata	3861794
TA13780	mRNA	TA13780	NC_011099.1	885258	886409	R	TA13780	complement(<885258..>886409)	Theileria annulata	3861793
TA13775	mRNA	TA13775	NC_011099.1	886659	887012	D	TA13775	join(<886659..886705,886802..>887012)	Theileria annulata	3861909
TA13770	mRNA	TA13770	NC_011099.1	887029	887659	D	TA13770	join(<887029..887161,887232..>887659)	Theileria annulata	3861908
TA13765	mRNA	TA13765	NC_011099.1	887721	889034	R	TA13765	complement(join(<887721..888048,888110..888484,888555..888755,888787..>889034))	Theileria annulata	3861907
TA13760	mRNA	TA13760	NC_011099.1	889178	889861	R	TA13760	complement(<889178..>889861)	Theileria annulata	3861906
TA13755	mRNA	TA13755	NC_011099.1	890339	891790	D	TA13755	join(<890339..890428,890468..>891790)	Theileria annulata	3861905
TA13750	mRNA	TA13750	NC_011099.1	892321	896166	R	TA13750	complement(join(<892321..892411,892443..892576,892666..>896166))	Theileria annulata	3861904
TA13745	mRNA	TA13745	NC_011099.1	896245	897304	R	TA13745	complement(join(<896245..896319,896414..>897304))	Theileria annulata	3861903
TA13730	mRNA	TA13730	NC_011099.1	897783	898449	D	TA13730	join(<897783..898054,898086..>898449)	Theileria annulata	3861900
TA13725	mRNA	TA13725	NC_011099.1	898693	899163	R	TA13725	complement(join(<898693..898804,898834..898938,898981..899058,899090..>899163))	Theileria annulata	3861899
TA13720	mRNA	TA13720	NC_011099.1	899955	904841	D	TA13720	join(<899955..900056,900203..903092,903193..>904841)	Theileria annulata	3861898
TA13715	mRNA	TA13715	NC_011099.1	904904	906696	R	TA13715	complement(join(<904904..905143,905234..905361,905454..906424,906530..>906696))	Theileria annulata	3861897
TA13710	mRNA	TA13710	NC_011099.1	906863	907686	D	TA13710	join(<906863..906979,907047..907156,907226..907259,907292..907349,907402..907499,907564..>907686)	Theileria annulata	3861896
TA13705	mRNA	TA13705	NC_011099.1	909289	910296	R	TA13705	complement(<909289..>910296)	Theileria annulata	3861895
TA13700	mRNA	TA13700	NC_011099.1	910845	911786	R	TA13700	complement(<910845..>911786)	Theileria annulata	3861894
TA13695	mRNA	TA13695	NC_011099.1	912057	912425	D	TA13695	<912057..>912425	Theileria annulata	3861893
TA13690	mRNA	TA13690	NC_011099.1	913250	914152	D	TA13690	<913250..>914152	Theileria annulata	3861892
TA13685	mRNA	TA13685	NC_011099.1	914489	915557	D	TA13685	join(<914489..914544,914638..915116,915172..915325,915350..>915557)	Theileria annulata	3861891
TA13680	mRNA	TA13680	NC_011099.1	916074	918946	D	TA13680	join(<916074..916471,916548..916905,916948..917803,917847..>918946)	Theileria annulata	3861832
TA13675	mRNA	TA13675	NC_011099.1	919057	919619	R	TA13675	complement(join(<919057..919239,919271..919355,919387..919443,919495..>919619))	Theileria annulata	3861831
TA13670	mRNA	TA13670	NC_011099.1	919843	921191	R	TA13670	complement(join(<919843..919884,919905..920126,920174..920267,920346..920476,920528..920706,920726..920833,921155..>921191))	Theileria annulata	3861830
TA13665	mRNA	TA13665	NC_011099.1	921279	922017	D	TA13665	join(<921279..921435,921498..921563,921604..921659,921709..921805,921872..>922017)	Theileria annulata	3861829
TA13660	mRNA	TA13660	NC_011099.1	922084	924143	R	TA13660	complement(join(<922084..922210,922277..922438,922506..922588,922618..923786,923832..923918,923987..>924143))	Theileria annulata	3861828
TA13655	mRNA	TA13655	NC_011099.1	924794	928789	D	TA13655	join(<924794..925976,926055..>928789)	Theileria annulata	3861827
TA13650	mRNA	TA13650	NC_011099.1	929200	929859	D	TA13650	<929200..>929859	Theileria annulata	3861826
TA13645	mRNA	TA13645	NC_011099.1	929924	934513	R	TA13645	complement(join(<929924..931206,931275..932631,932717..933465,933531..933666,933734..934069,934127..>934513))	Theileria annulata	3861825
TA13640	mRNA	TA13640	NC_011099.1	935215	936250	D	TA13640	join(<935215..935384,935439..935512,935567..935655,935727..935840,935875..935943,936026..936084,936115..>936250)	Theileria annulata	3861824
TA13635	mRNA	TA13635	NC_011099.1	936391	936957	D	TA13635	join(<936391..936683,936723..>936957)	Theileria annulata	3861823
TA13625	mRNA	TA13625	NC_011099.1	937059	937586	D	TA13625	<937059..>937586	Theileria annulata	3861821
TA13620	mRNA	TA13620	NC_011099.1	937654	939615	D	TA13620	<937654..>939615	Theileria annulata	3861820
TA13615	mRNA	TA13615	NC_011099.1	939738	940937	D	TA13615	join(<939738..940254,940312..940529,940582..940639,940762..>940937)	Theileria annulata	3861819
TA13610	mRNA	TA13610	NC_011099.1	941072	944519	D	TA13610	join(<941072..941120,941236..942702,942790..943232,943302..943759,943793..944138,944170..944354,944384..>944519)	Theileria annulata	3861818
TA13605	mRNA	TA13605	NC_011099.1	944883	946288	D	TA13605	join(<944883..945029,945113..945165,945246..945357,945393..945488,945554..945716,945788..945905,945981..946036,946089..>946288)	Theileria annulata	3861817
TA13600	mRNA	TA13600	NC_011099.1	946502	947990	R	TA13600	complement(join(<946502..947508,947546..>947990))	Theileria annulata	3861816
TA13595	mRNA	TA13595	NC_011099.1	949438	950629	D	TA13595	join(<949438..949567,949649..950310,950483..>950629)	Theileria annulata	3861815
TA13590	mRNA	TA13590	NC_011099.1	951032	954967	D	TA13590	<951032..>954967	Theileria annulata	3861814
TA13585	mRNA	TA13585	NC_011099.1	955000	956751	R	TA13585	complement(join(<955000..955126,955205..955320,955363..956106,956163..956441,956506..956635,956735..>956751))	Theileria annulata	3861813
TA13580	mRNA	TA13580	NC_011099.1	957862	958899	D	TA13580	<957862..>958899	Theileria annulata	3862469
TA13565	mRNA	TA13565	NC_011099.1	959287	961914	D	TA13565	<959287..>961914	Theileria annulata	3862466
TA13560	mRNA	TA13560	NC_011099.1	962021	963522	R	TA13560	complement(join(<962021..962857,962923..962987,963049..963325,963439..>963522))	Theileria annulata	3862465
TA13555	mRNA	TA13555	NC_011099.1	964437	971852	D	TA13555	<964437..>971852	Theileria annulata	3862464
TA13550	mRNA	TA13550	NC_011099.1	972375	973705	D	TA13550	join(<972375..972989,973047..973072,973102..973288,973451..973567,973598..>973705)	Theileria annulata	3862463
TA13545	mRNA	TA13545	NC_011099.1	973907	977247	D	TA13545	join(<973907..973985,974057..>977247)	Theileria annulata	3862462
TA13540	mRNA	TA13540	NC_011099.1	977369	985339	R	TA13540	complement(<977369..>985339)	Theileria annulata	3862461
TA13535	mRNA	TA13535	NC_011099.1	985552	986382	R	TA13535	complement(join(<985552..985833,985868..986027,986237..>986382))	Theileria annulata	3862460
TA13530	mRNA	TA13530	NC_011099.1	986662	988896	D	TA13530	<986662..>988896	Theileria annulata	3862459
TA13525	mRNA	TA13525	NC_011099.1	989058	991244	R	TA13525	complement(join(<989058..990308,990401..990979,991036..991127,991166..>991244))	Theileria annulata	3862458
TA13520	mRNA	TA13520	NC_011099.1	991924	993979	D	TA13520	join(<991924..992142,992194..992488,992547..>993979)	Theileria annulata	3862457
TA13515	mRNA	TA13515	NC_011099.1	994148	995962	R	TA13515	complement(<994148..>995962)	Theileria annulata	3862456
TA13510	mRNA	TA13510	NC_011099.1	997778	998520	D	TA13510	join(<997778..998186,998273..>998520)	Theileria annulata	3862455
TA13505	mRNA	TA13505	NC_011099.1	998737	999396	R	TA13505	complement(join(<998737..998842,998885..999083,999113..999152,999262..>999396))	Theileria annulata	3862454
TA13500	mRNA	TA13500	NC_011099.1	1000178	1001492	D	TA13500	join(<1000178..1000210,1000279..1000368,1000404..1000472,1000538..1000596,1000627..1000714,1000748..1000815,1000865..1001187,1001253..1001317,1001346..>1001492)	Theileria annulata	3862453
TA13495	mRNA	TA13495	NC_011099.1	1001550	1002837	R	TA13495	complement(join(<1001550..1002571,1002666..>1002837))	Theileria annulata	3862452
TA13490	mRNA	TA13490	NC_011099.1	1003252	1004436	D	TA13490	<1003252..>1004436	Theileria annulata	3862451
TA13485	mRNA	TA13485	NC_011099.1	1004534	1005469	R	TA13485	complement(<1004534..>1005469)	Theileria annulata	3861968
TA13480	mRNA	TA13480	NC_011099.1	1005614	1007831	R	TA13480	complement(join(<1005614..1006821,1006890..1007005,1007042..1007118,1007172..1007371,1007462..>1007831))	Theileria annulata	3861967
TA13475	mRNA	TA13475	NC_011099.1	1008063	1009238	R	TA13475	complement(join(<1008063..1008956,1009011..>1009238))	Theileria annulata	3861966
TA13470	mRNA	TA13470	NC_011099.1	1009558	1010642	R	TA13470	complement(join(<1009558..1009666,1009767..1009846,1009882..1009947,1010014..1010117,1010175..1010370,1010438..1010555,1010605..>1010642))	Theileria annulata	3861965
TA13460	mRNA	TA13460	NC_011099.1	1010919	1011575	R	TA13460	complement(<1010919..>1011575)	Theileria annulata	3861963
TA13455	mRNA	TA13455	NC_011099.1	1012356	1012791	R	TA13455	complement(join(<1012356..1012686,1012787..>1012791))	Theileria annulata	3861962
TA13450	mRNA	TA13450	NC_011099.1	1013344	1014874	D	TA13450	join(<1013344..1013414,1013448..1014261,1014344..1014564,1014598..>1014874)	Theileria annulata	3861961
TA13445	mRNA	TA13445	NC_011099.1	1014954	1015841	R	TA13445	complement(join(<1014954..1015220,1015254..>1015841))	Theileria annulata	3861960
TA13440	mRNA	TA13440	NC_011099.1	1016042	1016944	D	TA13440	<1016042..>1016944	Theileria annulata	3861959
TA13435	mRNA	TA13435	NC_011099.1	1017257	1017523	R	TA13435	complement(<1017257..>1017523)	Theileria annulata	3861958
TA13430	mRNA	TA13430	NC_011099.1	1017777	1019273	R	TA13430	complement(<1017777..>1019273)	Theileria annulata	3861957
TA13425	mRNA	TA13425	NC_011099.1	1019482	1026889	R	TA13425	complement(join(<1019482..1019664,1019726..1020045,1020087..1020267,1020428..1020783,1020835..>1026889))	Theileria annulata	3861956
TA13420	mRNA	TA13420	NC_011099.1	1026918	1031336	R	TA13420	complement(join(<1026918..1027345,1027384..1027519,1027551..1027688,1027720..1027887,1027979..1028037,1028093..1028279,1028338..1028434,1028495..1030904,1030951..1031065,1031133..>1031336))	Theileria annulata	3861955
TA13415	mRNA	TA13415	NC_011099.1	1031490	1031867	D	TA13415	join(<1031490..1031581,1031635..1031758,1031799..>1031867)	Theileria annulata	3861954
TA13400	mRNA	TA13400	NC_011099.1	1031953	1032993	R	TA13400	complement(<1031953..>1032993)	Theileria annulata	3861951
TA13395	mRNA	TA13395	NC_011099.1	1033029	1033857	D	TA13395	join(<1033029..1033255,1033298..1033526,1033567..>1033857)	Theileria annulata	3861950
TA13390	mRNA	TA13390	NC_011099.1	1033920	1034428	D	TA13390	join(<1033920..1033968,1034004..1034140,1034172..1034225,1034256..1034333,1034363..>1034428)	Theileria annulata	3861949
TA13385	mRNA	TA13385	NC_011099.1	1034650	1035990	R	TA13385	complement(join(<1034650..1035434,1035477..>1035990))	Theileria annulata	3861566
TA13380	mRNA	TA13380	NC_011099.1	1036531	1038925	R	TA13380	complement(join(<1036531..1036854,1036894..1037097,1037150..1037323,1037377..1038052,1038085..1038183,1038266..1038490,1038555..1038662,1038728..1038861,1038896..>1038925))	Theileria annulata	3861565
TA13375	mRNA	TA13375	NC_011099.1	1038986	1040627	R	TA13375	complement(join(<1038986..1039066,1039096..1039191,1039250..1039348,1039440..1039679,1039741..1039881,1039915..1040038,1040072..1040144,1040184..1040300,1040329..1040467,1040562..>1040627))	Theileria annulata	3861564
TA13370	mRNA	TA13370	NC_011099.1	1041155	1042238	R	TA13370	complement(join(<1041155..1041337,1041366..1041479,1041509..1041684,1041731..1041986,1042034..1042081,1042122..>1042238))	Theileria annulata	3861563
TA13365	mRNA	TA13365	NC_011099.1	1042492	1043028	D	TA13365	join(<1042492..1042500,1042537..>1043028)	Theileria annulata	3861562
TA13360	mRNA	TA13360	NC_011099.1	1043138	1043875	D	TA13360	<1043138..>1043875	Theileria annulata	3861561
TA13355	mRNA	TA13355	NC_011099.1	1043985	1045166	D	TA13355	join(<1043985..1044063,1044140..1044555,1044590..1044688,1044718..1044862,1044931..>1045166)	Theileria annulata	3861560
TA13345	mRNA	TA13345	NC_011099.1	1045229	1046038	R	TA13345	complement(join(<1045229..1045849,1045910..>1046038))	Theileria annulata	3861558
TA13340	mRNA	TA13340	NC_011099.1	1046292	1048101	R	TA13340	complement(join(<1046292..1046511,1046616..1046676,1046706..1046823,1046862..1046986,1047046..1047125,1047186..1047257,1047290..1047362,1047402..1047534,1047571..1047687,1047730..1047819,1047877..>1048101))	Theileria annulata	3861557
TA13335	mRNA	TA13335	NC_011099.1	1048198	1048774	R	TA13335	complement(join(<1048198..1048353,1048398..1048485,1048518..1048653,1048690..>1048774))	Theileria annulata	3861556
TA13330	mRNA	TA13330	NC_011099.1	1049396	1051599	D	TA13330	join(<1049396..1049590,1049632..1049742,1049812..>1051599)	Theileria annulata	3861555
TA13325	mRNA	TA13325	NC_011099.1	1051987	1056234	D	TA13325	join(<1051987..1053057,1053138..1053848,1053907..>1056234)	Theileria annulata	3861554
TA13320	mRNA	TA13320	NC_011099.1	1056328	1058881	D	TA13320	join(<1056328..1057642,1057673..1057790,1057867..>1058881)	Theileria annulata	3861553
TA13315	mRNA	TA13315	NC_011099.1	1059437	1060916	D	TA13315	join(<1059437..1059532,1059693..>1060916)	Theileria annulata	3861552
TA13310	mRNA	TA13310	NC_011099.1	1061763	1062974	R	TA13310	complement(join(<1061763..1061868,1061899..1062137,1062243..1062338,1062369..1062475,1062506..1062621,1062655..>1062974))	Theileria annulata	3861551
TA13305	mRNA	TA13305	NC_011099.1	1063297	1065348	R	TA13305	complement(join(<1063297..1063997,1064066..1064296,1064331..>1065348))	Theileria annulata	3861550
TA13300	mRNA	TA13300	NC_011099.1	1066886	1067595	D	TA13300	join(<1066886..1067001,1067035..1067183,1067279..1067452,1067504..>1067595)	Theileria annulata	3861549
TA13295	mRNA	TA13295	NC_011099.1	1067659	1068859	D	TA13295	join(<1067659..1067725,1067764..1068089,1068116..1068479,1068510..1068567,1068599..1068706,1068741..1068776,1068823..>1068859)	Theileria annulata	3861548
TA13290	mRNA	TA13290	NC_011099.1	1069544	1071807	D	TA13290	join(<1069544..1071189,1071226..1071328,1071358..1071567,1071598..>1071807)	Theileria annulata	3862262
TA13285	mRNA	TA13285	NC_011099.1	1071922	1073458	R	TA13285	complement(join(<1071922..1072089,1072166..1072547,1072601..1072672,1072707..1072766,1072810..1073039,1073069..1073265,1073298..1073332,1073406..>1073458))	Theileria annulata	3862261
TA13280	mRNA	TA13280	NC_011099.1	1074038	1077520	D	TA13280	join(<1074038..1076455,1076518..1077038,1077068..1077166,1077196..>1077520)	Theileria annulata	3862260
TA13275	mRNA	TA13275	NC_011099.1	1077768	1079584	R	TA13275	complement(join(<1077768..1078149,1078191..1078365,1078407..1078703,1078791..1079057,1079088..1079178,1079225..>1079584))	Theileria annulata	3862259
TA13270	mRNA	TA13270	NC_011099.1	1080828	1082161	R	TA13270	complement(join(<1080828..1080886,1080918..1080991,1081021..1081143,1081173..1081303,1081339..1081505,1081544..1081623,1081653..1081872,1081912..>1082161))	Theileria annulata	3862258
TA13265	mRNA	TA13265	NC_011099.1	1082394	1083550	D	TA13265	join(<1082394..1082791,1082821..>1083550)	Theileria annulata	3862257
TA13260	mRNA	TA13260	NC_011099.1	1083618	1084553	R	TA13260	complement(<1083618..>1084553)	Theileria annulata	3862256
TA13255	mRNA	TA13255	NC_011099.1	1084881	1087042	R	TA13255	complement(join(<1084881..1085053,1085086..>1087042))	Theileria annulata	3862255
TA13250	mRNA	TA13250	NC_011099.1	1087476	1089238	R	TA13250	complement(join(<1087476..1088514,1088544..1088757,1088787..1089139,1089174..>1089238))	Theileria annulata	3862254
TA13240	mRNA	TA13240	NC_011099.1	1089506	1091851	R	TA13240	complement(<1089506..>1091851)	Theileria annulata	3862252
TA13235	mRNA	TA13235	NC_011099.1	1092748	1094909	R	TA13235	complement(join(<1092748..1092920,1092953..>1094909))	Theileria annulata	3862251
TA13230	mRNA	TA13230	NC_011099.1	1095343	1097102	R	TA13230	complement(join(<1095343..1096378,1096408..1096621,1096651..1097003,1097038..>1097102))	Theileria annulata	3862250
TA13225	mRNA	TA13225	NC_011099.1	1097202	1098778	D	TA13225	join(<1097202..1097277,1097426..1097652,1097682..1097996,1098029..1098197,1098342..>1098778)	Theileria annulata	3862249
TA13220	mRNA	TA13220	NC_011099.1	1099057	1100619	D	TA13220	join(<1099057..1099122,1099171..1099233,1099263..1099563,1099594..1099675,1099706..1099934,1099968..1100300,1100343..1100489,1100521..>1100619)	Theileria annulata	3862248
TA13215	mRNA	TA13215	NC_011099.1	1100860	1102106	D	TA13215	join(<1100860..1100959,1100999..1101636,1101667..1101913,1101946..>1102106)	Theileria annulata	3862247
TA13210	mRNA	TA13210	NC_011099.1	1102171	1102632	R	TA13210	complement(join(<1102171..1102400,1102435..1102516,1102579..>1102632))	Theileria annulata	3862246
TA13205	mRNA	TA13205	NC_011099.1	1103356	1104306	R	TA13205	complement(join(<1103356..1103446,1103479..1103570,1103604..1103665,1103696..1103814,1103845..1103856,1103919..1104051,1104087..>1104306))	Theileria annulata	3862245
TA13200	mRNA	TA13200	NC_011099.1	1104487	1106178	R	TA13200	complement(join(<1104487..1104708,1104739..1104830,1104863..1104930,1104961..1105241,1105283..1105465,1105499..1105594,1105625..1105727,1105757..1105896,1105929..1106000,1106035..>1106178))	Theileria annulata	3862244
TA13195	mRNA	TA13195	NC_011099.1	1106550	1107331	D	TA13195	join(<1106550..1106802,1106835..>1107331)	Theileria annulata	3862243
TA13180	mRNA	TA13180	NC_011099.1	1107608	1108908	D	TA13180	join(<1107608..1108153,1108188..1108537,1108611..>1108908)	Theileria annulata	3862084
TA13175	mRNA	TA13175	NC_011099.1	1109138	1109902	D	TA13175	<1109138..>1109902	Theileria annulata	3862083
TA13170	mRNA	TA13170	NC_011099.1	1109947	1110717	R	TA13170	complement(<1109947..>1110717)	Theileria annulata	3862082
TA13165	mRNA	TA13165	NC_011099.1	1110921	1111691	D	TA13165	<1110921..>1111691	Theileria annulata	3862081
TA13160	mRNA	TA13160	NC_011099.1	1112600	1114912	D	TA13160	<1112600..>1114912	Theileria annulata	3862080
TA13155	mRNA	TA13155	NC_011099.1	1115278	1116815	D	TA13155	join(<1115278..1115688,1115750..1116036,1116066..1116129,1116196..1116304,1116337..1116412,1116450..1116621,1116684..>1116815)	Theileria annulata	3862079
TA13150	mRNA	TA13150	NC_011099.1	1116931	1117963	R	TA13150	complement(join(<1116931..1117256,1117385..1117561,1117599..1117672,1117815..>1117963))	Theileria annulata	3862078
TA13145	mRNA	TA13145	NC_011099.1	1118133	1119252	R	TA13145	complement(join(<1118133..1118915,1118998..>1119252))	Theileria annulata	3862077
TA13140	mRNA	TA13140	NC_011099.1	1119518	1120698	R	TA13140	complement(join(<1119518..1120003,1120036..>1120698))	Theileria annulata	3862076
TA13135	mRNA	TA13135	NC_011099.1	1121215	1123732	R	TA13135	complement(join(<1121215..1121313,1121397..1121502,1121533..1121764,1121795..1121864,1121894..1121986,1122017..1122255,1122313..1122404,1122444..1123440,1123519..>1123732))	Theileria annulata	3862075
TA13125	mRNA	TA13125	NC_011099.1	1124216	1126796	D	TA13125	join(<1124216..1124980,1125033..1125245,1125318..>1126796)	Theileria annulata	3862073
TA13120	mRNA	TA13120	NC_011099.1	1127138	1127813	D	TA13120	join(<1127138..1127498,1127585..1127688,1127718..>1127813)	Theileria annulata	3862072
TA13115	mRNA	TA13115	NC_011099.1	1127929	1128742	R	TA13115	complement(join(<1127929..1128470,1128562..>1128742))	Theileria annulata	3862071
TA13110	mRNA	TA13110	NC_011099.1	1128983	1129369	D	TA13110	<1128983..>1129369	Theileria annulata	3862070
TA13105	mRNA	TA13105	NC_011099.1	1129406	1131082	R	TA13105	complement(<1129406..>1131082)	Theileria annulata	3862069
TA13100	mRNA	TA13100	NC_011099.1	1132322	1134112	D	TA13100	join(<1132322..1132459,1132540..1132635,1132703..>1134112)	Theileria annulata	3862068
TA13095	mRNA	TA13095	NC_011099.1	1134199	1134709	R	TA13095	complement(join(<1134199..1134380,1134442..>1134709))	Theileria annulata	3862027
TA13090	mRNA	TA13090	NC_011099.1	1135044	1136825	D	TA13090	<1135044..>1136825	Theileria annulata	3862026
TA13085	mRNA	TA13085	NC_011099.1	1137059	1142611	D	TA13085	<1137059..>1142611	Theileria annulata	3862025
TA13080	mRNA	TA13080	NC_011099.1	1142830	1145027	R	TA13080	complement(join(<1142830..1143836,1143979..1144335,1144463..1144761,1144798..>1145027))	Theileria annulata	3862024
TA13075	mRNA	TA13075	NC_011099.1	1145429	1146167	R	TA13075	complement(join(<1145429..1145761,1145868..>1146167))	Theileria annulata	3862023
TA13070	mRNA	TA13070	NC_011099.1	1146624	1147120	D	TA13070	join(<1146624..1146679,1146748..>1147120)	Theileria annulata	3862022
TA13065	mRNA	TA13065	NC_011099.1	1147441	1148076	R	TA13065	complement(join(<1147441..1147766,1147815..>1148076))	Theileria annulata	3862021
TA13060	mRNA	TA13060	NC_011099.1	1148262	1148615	R	TA13060	complement(<1148262..>1148615)	Theileria annulata	3862020
TA13055	mRNA	TA13055	NC_011099.1	1148977	1151973	R	TA13055	complement(join(<1148977..1151645,1151688..>1151973))	Theileria annulata	3862019
TA13050	mRNA	TA13050	NC_011099.1	1152406	1154821	D	TA13050	join(<1152406..1152420,1152453..1152559,1152589..1152728,1152834..1152928,1152959..1153013,1153044..1153360,1153617..1153666,1153779..1153931,1154024..1154109,1154182..1154238,1154270..1154578,1154715..>1154821)	Theileria annulata	3862018
TA13045	mRNA	TA13045	NC_011099.1	1155230	1157212	D	TA13045	join(<1155230..1155464,1155497..1155705,1155742..1156216,1156281..>1157212)	Theileria annulata	3862017
TA13040	mRNA	TA13040	NC_011099.1	1157370	1160247	R	TA13040	complement(join(<1157370..1157516,1157610..1157843,1157951..1158048,1158105..1158378,1158478..1158901,1158947..>1160247))	Theileria annulata	3862016
TA13035	mRNA	TA13035	NC_011099.1	1160585	1162666	D	TA13035	<1160585..>1162666	Theileria annulata	3862015
TA13030	mRNA	TA13030	NC_011099.1	1162715	1163614	D	TA13030	join(<1162715..1163177,1163212..1163340,1163391..>1163614)	Theileria annulata	3862014
TA13020	mRNA	TA13020	NC_011099.1	1163815	1164540	D	TA13020	<1163815..>1164540	Theileria annulata	3862012
TA13015	mRNA	TA13015	NC_011099.1	1164641	1165564	R	TA13015	complement(<1164641..>1165564)	Theileria annulata	3862011
TA13010	mRNA	TA13010	NC_011099.1	1165607	1168032	R	TA13010	complement(join(<1165607..1166983,1167082..>1168032))	Theileria annulata	3862010
TA13005	mRNA	TA13005	NC_011099.1	1168167	1171306	R	TA13005	complement(join(<1168167..1168619,1168754..1168813,1168846..1168938,1168968..1169095,1169124..1169183,1169235..1170147,1170234..1170414,1170444..1170604,1170766..1171120,1171155..1171260,1171291..>1171306))	Theileria annulata	3862009
TA13000	mRNA	TA13000	NC_011099.1	1171667	1173653	D	TA13000	join(<1171667..1171828,1171919..1172083,1172148..1172312,1172369..1172477,1172512..1172682,1172712..1172806,1172886..1172928,1172981..1173093,1173184..1173418,1173463..>1173653)	Theileria annulata	3862008
TA12995	mRNA	TA12995	NC_011099.1	1173968	1175815	D	TA12995	<1173968..>1175815	Theileria annulata	3862488
TA12990	mRNA	TA12990	NC_011099.1	1175947	1176261	R	TA12990	complement(<1175947..>1176261)	Theileria annulata	3862487
TA12985	mRNA	TA12985	NC_011099.1	1176475	1177905	R	TA12985	complement(join(<1176475..1176630,1176662..1176844,1176928..1177074,1177135..>1177905))	Theileria annulata	3862486
TA12980	mRNA	TA12980	NC_011099.1	1178098	1181057	R	TA12980	complement(join(<1178098..1178166,1178207..1178300,1178331..1178641,1178672..1178846,1178880..1179073,1179125..1179229,1179278..1179543,1179644..1180753,1180842..1180945,1180978..>1181057))	Theileria annulata	3862485
TA12975	mRNA	TA12975	NC_011099.1	1181537	1181974	R	TA12975	complement(<1181537..>1181974)	Theileria annulata	3862484
TA12965	mRNA	TA12965	NC_011099.1	1183027	1185625	D	TA12965	join(<1183027..1184282,1184376..1185292,1185372..1185483,1185514..>1185625)	Theileria annulata	3862482
TA12960	mRNA	TA12960	NC_011099.1	1185789	1186883	R	TA12960	complement(<1185789..>1186883)	Theileria annulata	3862481
TA12955	mRNA	TA12955	NC_011099.1	1187342	1188972	R	TA12955	complement(join(<1187342..1187503,1187545..1187667,1187702..1187855,1187925..1188098,1188158..1188362,1188429..>1188972))	Theileria annulata	3862480
TA12950	mRNA	TA12950	NC_011099.1	1189325	1189759	D	TA12950	join(<1189325..1189427,1189481..1189576,1189611..>1189759)	Theileria annulata	3862479
TA12945	mRNA	TA12945	NC_011099.1	1190258	1191345	D	TA12945	join(<1190258..1190493,1190546..1190665,1190697..1190934,1190965..1191237,1191268..>1191345)	Theileria annulata	3862478
TA12940	mRNA	TA12940	NC_011099.1	1191397	1192197	R	TA12940	complement(join(<1191397..1191565,1191694..1191838,1191867..>1192197))	Theileria annulata	3862477
TA12935	mRNA	TA12935	NC_011099.1	1192323	1193867	R	TA12935	complement(join(<1192323..1192436,1192469..1192551,1192583..1192684,1192714..1192821,1192852..1193047,1193110..1193159,1193185..1193328,1193362..1193398,1193431..1193538,1193569..1193652,1193714..1193797,1193853..>1193867))	Theileria annulata	3862476
TA12930	mRNA	TA12930	NC_011099.1	1194182	1194577	D	TA12930	join(<1194182..1194328,1194359..>1194577)	Theileria annulata	3862475
TA12925	mRNA	TA12925	NC_011099.1	1194705	1199396	R	TA12925	complement(<1194705..>1199396)	Theileria annulata	3862474
TA12920	mRNA	TA12920	NC_011099.1	1200036	1204619	R	TA12920	complement(<1200036..>1204619)	Theileria annulata	3862473
TA12905	mRNA	TA12905	NC_011099.1	1205221	1206960	D	TA12905	join(<1205221..1205446,1205488..1205671,1205727..1206102,1206136..1206243,1206275..1206466,1206497..1206651,1206683..1206744,1206774..1206841,1206871..>1206960)	Theileria annulata	3862470
TA12900	mRNA	TA12900	NC_011099.1	1206991	1211610	R	TA12900	complement(<1206991..>1211610)	Theileria annulata	3861792
TA12895	mRNA	TA12895	NC_011099.1	1212245	1215386	R	TA12895	complement(join(<1212245..1212320,1212351..1212411,1212442..1212531,1212561..1212642,1212671..1212803,1212833..1213089,1213119..1213242,1213272..1213591,1213621..1213663,1213698..1214203,1214233..1214514,1214545..1215326,1215362..>1215386))	Theileria annulata	3861791
TA12890	mRNA	TA12890	NC_011099.1	1215697	1219045	D	TA12890	join(<1215697..1216558,1216590..1216979,1217048..1217314,1217379..>1219045)	Theileria annulata	3861790
TA12885	mRNA	TA12885	NC_011099.1	1219112	1222848	R	TA12885	complement(join(<1219112..1219168,1219240..>1222848))	Theileria annulata	3861789
TA12880	mRNA	TA12880	NC_011099.1	1223106	1224097	R	TA12880	complement(join(<1223106..1223300,1223342..1223823,1223857..1223991,1224031..>1224097))	Theileria annulata	3861788
TA12875	mRNA	TA12875	NC_011099.1	1224860	1225445	D	TA12875	join(<1224860..1224976,1225010..1225067,1225131..1225215,1225265..>1225445)	Theileria annulata	3861787
TA12870	mRNA	TA12870	NC_011099.1	1225553	1226169	D	TA12870	join(<1225553..1225740,1225772..1225821,1225852..1225908,1225949..>1226169)	Theileria annulata	3861786
TA12865	mRNA	TA12865	NC_011099.1	1226621	1229818	R	TA12865	complement(<1226621..>1229818)	Theileria annulata	3861785
TA12860	mRNA	TA12860	NC_011099.1	1230332	1231483	R	TA12860	complement(join(<1230332..1230427,1230459..1230618,1230647..1231289,1231321..>1231483))	Theileria annulata	3861784
TA12855	mRNA	TA12855	NC_011099.1	1231875	1232526	R	TA12855	complement(join(<1231875..1232304,1232336..>1232526))	Theileria annulata	3861783
TA12850	mRNA	TA12850	NC_011099.1	1232592	1232810	R	TA12850	complement(<1232592..>1232810)	Theileria annulata	3861782
TA12845	mRNA	TA12845	NC_011099.1	1233211	1234948	D	TA12845	join(<1233211..1234224,1234254..1234367,1234399..1234508,1234540..1234619,1234653..>1234948)	Theileria annulata	3861781
TA12840	mRNA	TA12840	NC_011099.1	1235905	1237040	D	TA12840	join(<1235905..1236751,1236829..1236872,1236906..>1237040)	Theileria annulata	3861780
TA12835	mRNA	TA12835	NC_011099.1	1237402	1238517	D	TA12835	join(<1237402..1237468,1237565..1237675,1237705..1237832,1237862..1237960,1237990..1238140,1238171..1238314,1238345..>1238517)	Theileria annulata	3861779
TA12830	mRNA	TA12830	NC_011099.1	1238543	1239588	R	TA12830	complement(join(<1238543..1238622,1238651..1238749,1238783..1238858,1238888..1239067,1239101..1239164,1239193..1239324,1239359..>1239588))	Theileria annulata	3861778
TA12825	mRNA	TA12825	NC_011099.1	1239762	1240306	D	TA12825	join(<1239762..1240163,1240193..>1240306)	Theileria annulata	3861777
TA12820	mRNA	TA12820	NC_011099.1	1240394	1240795	R	TA12820	complement(<1240394..>1240795)	Theileria annulata	3861776
TA12815	mRNA	TA12815	NC_011099.1	1241395	1241789	D	TA12815	join(<1241395..1241559,1241590..1241680,1241713..>1241789)	Theileria annulata	3861775
TA12810	mRNA	TA12810	NC_011099.1	1241977	1243038	D	TA12810	join(<1241977..1242046,1242110..1242230,1242260..1242402,1242432..1242490,1242522..1242583,1242621..1242714,1242745..1242809,1242846..>1243038)	Theileria annulata	3861774
TA12800	mRNA	TA12800	NC_011099.1	1243239	1244395	R	TA12800	complement(join(<1243239..1243848,1243890..1243940,1243974..>1244395))	Theileria annulata	3862144
TA12795	mRNA	TA12795	NC_011099.1	1244701	1246085	D	TA12795	join(<1244701..1245159,1245205..1245338,1245375..1245475,1245508..1245586,1245617..>1246085)	Theileria annulata	3862143
TA12790	mRNA	TA12790	NC_011099.1	1246148	1247111	D	TA12790	join(<1246148..1246200,1246305..1246597,1246648..>1247111)	Theileria annulata	3862142
TA12785	mRNA	TA12785	NC_011099.1	1247147	1247824	D	TA12785	<1247147..>1247824	Theileria annulata	3862141
TA12780	mRNA	TA12780	NC_011099.1	1248045	1249206	R	TA12780	complement(join(<1248045..1248883,1248936..>1249206))	Theileria annulata	3862140
TA12775	mRNA	TA12775	NC_011099.1	1249652	1250501	D	TA12775	join(<1249652..1250246,1250281..>1250501)	Theileria annulata	3862139
TA12770	mRNA	TA12770	NC_011099.1	1250589	1250945	D	TA12770	<1250589..>1250945	Theileria annulata	3862138
TA12765	mRNA	TA12765	NC_011099.1	1251061	1252486	R	TA12765	complement(join(<1251061..1251158,1251190..1251352,1251390..1251635,1251667..1252185,1252226..>1252486))	Theileria annulata	3862137
TA12760	mRNA	TA12760	NC_011099.1	1253016	1255536	D	TA12760	join(<1253016..1253346,1253402..1255033,1255065..1255322,1255355..1255434,1255465..>1255536)	Theileria annulata	3862136
TA12755	mRNA	TA12755	NC_011099.1	1256025	1256524	D	TA12755	join(<1256025..1256198,1256231..>1256524)	Theileria annulata	3862135
TA12745	mRNA	TA12745	NC_011099.1	1256651	1259962	R	TA12745	complement(<1256651..>1259962)	Theileria annulata	3862133
TA12740	mRNA	TA12740	NC_011099.1	1260360	1263108	R	TA12740	complement(join(<1260360..1260973,1261009..1261053,1261086..>1263108))	Theileria annulata	3862132
TA12735	mRNA	TA12735	NC_011099.1	1263397	1263855	D	TA12735	join(<1263397..1263539,1263571..1263648,1263684..>1263855)	Theileria annulata	3862131
TA12730	mRNA	TA12730	NC_011099.1	1264615	1265636	R	TA12730	complement(join(<1264615..1264656,1264682..1264775,1264806..1264855,1264942..1265097,1265160..1265262,1265293..1265456,1265490..>1265636))	Theileria annulata	3862130
TA12725	mRNA	TA12725	NC_011099.1	1265796	1266474	D	TA12725	join(<1265796..1265858,1265897..1266082,1266113..1266227,1266266..>1266474)	Theileria annulata	3862129
TA12720	mRNA	TA12720	NC_011099.1	1266560	1266981	R	TA12720	complement(join(<1266560..1266615,1266648..1266721,1266755..>1266981))	Theileria annulata	3862128
TA12715	mRNA	TA12715	NC_011099.1	1267221	1268817	D	TA12715	join(<1267221..1267354,1267391..1267469,1267500..1267574,1267605..1267661,1267693..1267770,1267801..1267926,1267957..1268058,1268087..1268127,1268160..1268225,1268254..1268332,1268362..1268637,1268680..>1268817)	Theileria annulata	3862127
TA12710	mRNA	TA12710	NC_011099.1	1268932	1270087	R	TA12710	complement(join(<1268932..1269165,1269201..1269421,1269451..1269552,1269584..1269793,1269841..1269988,1270031..>1270087))	Theileria annulata	3862126
TA12705	mRNA	TA12705	NC_011099.1	1270525	1271875	R	TA12705	complement(join(<1270525..1270884,1270936..1271235,1271272..1271457,1271486..>1271875))	Theileria annulata	3862282
TA12700	mRNA	TA12700	NC_011099.1	1272350	1273767	R	TA12700	complement(join(<1272350..1272719,1272753..1272826,1272859..1272892,1272916..1273349,1273383..1273587,1273619..>1273767))	Theileria annulata	3862281
TA12685	mRNA	TA12685	NC_011099.1	1274052	1277938	D	TA12685	join(<1274052..1277571,1277629..1277801,1277834..>1277938)	Theileria annulata	3862278
TA12680	mRNA	TA12680	NC_011099.1	1278072	1279059	R	TA12680	complement(join(<1278072..1278107,1278159..1278622,1278654..>1279059))	Theileria annulata	3862277
TA12675	mRNA	TA12675	NC_011099.1	1280036	1281396	R	TA12675	complement(join(<1280036..1280133,1280164..1280565,1280604..>1281396))	Theileria annulata	3862276
TA12670	mRNA	TA12670	NC_011099.1	1281756	1282625	R	TA12670	complement(join(<1281756..1281971,1282011..>1282625))	Theileria annulata	3862275
TA12665	mRNA	TA12665	NC_011099.1	1283262	1285235	D	TA12665	join(<1283262..1283395,1283439..1283482,1283515..>1285235)	Theileria annulata	3862274
TA12660	mRNA	TA12660	NC_011099.1	1285342	1286559	D	TA12660	join(<1285342..1285471,1285511..1285662,1285693..>1286559)	Theileria annulata	3862273
TA12655	mRNA	TA12655	NC_011099.1	1286643	1287354	D	TA12655	join(<1286643..1286750,1286792..1286944,1287028..1287091,1287139..1287234,1287269..>1287354)	Theileria annulata	3862272
TA12650	mRNA	TA12650	NC_011099.1	1287424	1287831	R	TA12650	complement(join(<1287424..1287567,1287607..>1287831))	Theileria annulata	3862271
TA12645	mRNA	TA12645	NC_011099.1	1287968	1289866	D	TA12645	<1287968..>1289866	Theileria annulata	3862270
TA12640	mRNA	TA12640	NC_011099.1	1290033	1290484	D	TA12640	join(<1290033..1290140,1290185..1290241,1290275..>1290484)	Theileria annulata	3862269
TA12630	mRNA	TA12630	NC_011099.1	1290497	1291737	R	TA12630	complement(join(<1290497..1290577,1290608..1290961,1290993..1291234,1291265..1291391,1291423..1291577,1291610..1291642,1291674..>1291737))	Theileria annulata	3862267
TA12625	mRNA	TA12625	NC_011099.1	1291914	1292483	D	TA12625	<1291914..>1292483	Theileria annulata	3862266
TA12620	mRNA	TA12620	NC_011099.1	1292545	1296083	R	TA12620	complement(join(<1292545..1293632,1293694..1293733,1293806..1293919,1293996..1294502,1294534..1294855,1294884..1295013,1295043..1295161,1295191..>1296083))	Theileria annulata	3862265
TA12615	mRNA	TA12615	NC_011099.1	1296192	1296681	R	TA12615	complement(join(<1296192..1296426,1296464..1296569,1296642..>1296681))	Theileria annulata	3862264
TA12610	mRNA	TA12610	NC_011099.1	1297388	1300010	D	TA12610	join(<1297388..1297537,1297580..1297735,1297767..>1300010)	Theileria annulata	3862263
TA12605	mRNA	TA12605	NC_011099.1	1300019	1300911	R	TA12605	complement(join(<1300019..1300098,1300167..1300296,1300325..1300544,1300577..>1300911))	Theileria annulata	3861716
TA12600	mRNA	TA12600	NC_011099.1	1301055	1301614	D	TA12600	join(<1301055..1301205,1301239..1301358,1301388..1301566,1301597..>1301614)	Theileria annulata	3861715
TA12595	mRNA	TA12595	NC_011099.1	1301633	1302980	R	TA12595	complement(join(<1301633..1301657,1301692..1301912,1301942..1302112,1302146..1302345,1302375..1302652,1302691..>1302980))	Theileria annulata	3861714
TA12590	mRNA	TA12590	NC_011099.1	1303261	1304818	R	TA12590	complement(join(<1303261..1303556,1303587..1303626,1303660..1303797,1303828..1303877,1303908..1304000,1304030..1304135,1304166..1304221,1304254..1304388,1304418..1304610,1304663..>1304818))	Theileria annulata	3861713
TA12585	mRNA	TA12585	NC_011099.1	1304896	1305749	R	TA12585	complement(join(<1304896..1305059,1305091..1305483,1305526..1305708,1305740..>1305749))	Theileria annulata	3861712
TA12575	mRNA	TA12575	NC_011099.1	1305952	1307418	D	TA12575	join(<1305952..1306887,1306921..>1307418)	Theileria annulata	3861710
TA12570	mRNA	TA12570	NC_011099.1	1307563	1311040	D	TA12570	join(<1307563..1308838,1308870..1309475,1309521..>1311040)	Theileria annulata	3861709
TA12565	mRNA	TA12565	NC_011099.1	1311097	1311738	R	TA12565	complement(<1311097..>1311738)	Theileria annulata	3861708
TA12560	mRNA	TA12560	NC_011099.1	1312080	1314311	D	TA12560	join(<1312080..1313778,1313842..>1314311)	Theileria annulata	3861707
TA12555	mRNA	TA12555	NC_011099.1	1314405	1315580	D	TA12555	<1314405..>1315580	Theileria annulata	3861706
TA12550	mRNA	TA12550	NC_011099.1	1315718	1321073	R	TA12550	complement(join(<1315718..1315852,1315885..1316609,1316641..1316740,1316851..1317097,1317129..1317722,1317819..1319799,1319831..1320133,1320223..1320310,1320346..1320608,1320647..1320725,1320754..1320827,1320857..>1321073))	Theileria annulata	3861705
TA12545	mRNA	TA12545	NC_011099.1	1321185	1322785	R	TA12545	complement(join(<1321185..1321248,1321280..1321334,1321366..1321427,1321459..1321571,1321602..1321667,1321695..1321811,1321841..1321921,1321953..1322099,1322130..1322210,1322252..1322326,1322356..1322499,1322536..1322567,1322601..1322634,1322672..>1322785))	Theileria annulata	3861704
TA12540	mRNA	TA12540	NC_011099.1	1322865	1323831	D	TA12540	join(<1322865..1323415,1323468..1323658,1323688..1323749,1323778..>1323831)	Theileria annulata	3861703
TA12535	mRNA	TA12535	NC_011099.1	1323975	1324456	R	TA12535	complement(join(<1323975..1324268,1324298..1324413,1324447..>1324456))	Theileria annulata	3861702
TA12530	mRNA	TA12530	NC_011099.1	1325001	1327898	D	TA12530	join(<1325001..1325923,1325953..1326135,1326166..1326298,1326330..1326458,1326544..1326937,1327199..1327393,1327423..1327647,1327678..>1327898)	Theileria annulata	3861701
TA12520	mRNA	TA12520	NC_011099.1	1328016	1329776	R	TA12520	complement(join(<1328016..1329461,1329501..>1329776))	Theileria annulata	3861699
TA12515	mRNA	TA12515	NC_011099.1	1329999	1331772	R	TA12515	complement(join(<1329999..1330373,1330405..1330538,1330651..1330841,1330898..>1331772))	Theileria annulata	3861698
TA12510	mRNA	TA12510	NC_011099.1	1332060	1332994	D	TA12510	join(<1332060..1332115,1332151..1332233,1332277..1332388,1332428..1332660,1332695..1332804,1332838..1332873,1332980..>1332994)	Theileria annulata	3862333
TA12505	mRNA	TA12505	NC_011099.1	1333219	1335255	D	TA12505	<1333219..>1335255	Theileria annulata	3862332
TA12500	mRNA	TA12500	NC_011099.1	1336173	1336646	R	TA12500	complement(join(<1336173..1336451,1336482..>1336646))	Theileria annulata	3862331
TA12495	mRNA	TA12495	NC_011099.1	1336987	1339089	R	TA12495	complement(join(<1336987..1337096,1337115..1337142,1337185..1337297,1337337..1337881,1337957..1338317,1338347..1338677,1338715..>1339089))	Theileria annulata	3862330
TA12490	mRNA	TA12490	NC_011099.1	1339151	1339740	D	TA12490	join(<1339151..1339344,1339377..1339494,1339534..>1339740)	Theileria annulata	3862329
TA12485	mRNA	TA12485	NC_011099.1	1339876	1341855	R	TA12485	complement(join(<1339876..1340014,1340048..1340148,1340178..1340264,1340328..1340390,1340422..1340535,1340566..1340685,1340751..1340859,1340891..>1341855))	Theileria annulata	3862328
TA12480	mRNA	TA12480	NC_011099.1	1342442	1344520	D	TA12480	<1342442..>1344520	Theileria annulata	3862327
TA12475	mRNA	TA12475	NC_011099.1	1344663	1345187	D	TA12475	<1344663..>1345187	Theileria annulata	3862326
TA12470	mRNA	TA12470	NC_011099.1	1345321	1347303	R	TA12470	complement(join(<1345321..1345701,1345740..1345844,1345888..1345969,1346000..1346250,1346280..1346347,1346380..1346559,1346596..1346665,1346759..1346913,1346966..1347086,1347118..>1347303))	Theileria annulata	3862325
TA12465	mRNA	TA12465	NC_011099.1	1347419	1348705	R	TA12465	complement(join(<1347419..1347450,1347491..1347693,1347734..1347858,1347892..1347961,1348095..1348127,1348158..1348222,1348310..1348455,1348513..>1348705))	Theileria annulata	3862324
TA12460	mRNA	TA12460	NC_011099.1	1348814	1352715	D	TA12460	join(<1348814..1349006,1349048..1349229,1349337..1349503,1349554..1349823,1349903..1350319,1350388..1350806,1350883..1351642,1351734..>1352715)	Theileria annulata	3862323
TA12455	mRNA	TA12455	NC_011099.1	1352848	1354824	R	TA12455	complement(join(<1352848..1354632,1354669..>1354824))	Theileria annulata	3862322
TA12450	mRNA	TA12450	NC_011099.1	1355335	1356378	R	TA12450	complement(join(<1355335..1355594,1355634..>1356378))	Theileria annulata	3862321
TA12445	mRNA	TA12445	NC_011099.1	1358536	1359639	D	TA12445	<1358536..>1359639	Theileria annulata	3862320
TA12440	mRNA	TA12440	NC_011099.1	1360106	1362496	D	TA12440	<1360106..>1362496	Theileria annulata	3862319
TA12435	mRNA	TA12435	NC_011099.1	1362865	1363224	D	TA12435	join(<1362865..1362988,1363022..>1363224)	Theileria annulata	3862318
TA12430	mRNA	TA12430	NC_011099.1	1363547	1366366	D	TA12430	join(<1363547..1363851,1363968..1364107,1364187..>1366366)	Theileria annulata	3862317
TA12425	mRNA	TA12425	NC_011099.1	1366491	1367225	R	TA12425	complement(<1366491..>1367225)	Theileria annulata	3862316
TA12415	mRNA	TA12415	NC_011099.1	1367457	1369840	D	TA12415	join(<1367457..1367738,1367813..1368030,1368103..1368347,1368463..1368653,1368686..>1369840)	Theileria annulata	3862314
TA12410	mRNA	TA12410	NC_011099.1	1370211	1370974	D	TA12410	join(<1370211..1370616,1370731..1370837,1370867..>1370974)	Theileria annulata	3862450
TA12405	mRNA	TA12405	NC_011099.1	1371386	1372889	R	TA12405	complement(join(<1371386..1372026,1372088..>1372889))	Theileria annulata	3862449
TA12400	mRNA	TA12400	NC_011099.1	1373305	1373984	R	TA12400	complement(join(<1373305..1373483,1373632..1373714,1373773..>1373984))	Theileria annulata	3862448
TA12395	mRNA	TA12395	NC_011099.1	1374178	1376399	D	TA12395	join(<1374178..1374264,1374324..1374556,1374649..1375069,1375085..1375265,1375317..1375412,1375445..1375547,1375590..1375640,1375657..1375729,1375880..1376131,1376162..1376334,1376366..>1376399)	Theileria annulata	3862447
TA12390	mRNA	TA12390	NC_011099.1	1376455	1376960	R	TA12390	complement(join(<1376455..1376904,1376940..>1376960))	Theileria annulata	3862446
TA12385	mRNA	TA12385	NC_011099.1	1377456	1378101	D	TA12385	join(<1377456..1377637,1377670..1377817,1377847..>1378101)	Theileria annulata	3862445
TA12380	mRNA	TA12380	NC_011099.1	1378173	1380162	R	TA12380	complement(join(<1378173..1378373,1378405..1378530,1378559..1378679,1378711..1378778,1378808..1379168,1379204..1379285,1379322..1379432,1379461..1379568,1379622..1379715,1379745..1379801,1379831..1379981,1380011..>1380162))	Theileria annulata	3862444
TA12375	mRNA	TA12375	NC_011099.1	1380373	1381004	D	TA12375	join(<1380373..1380566,1380598..1380770,1380802..>1381004)	Theileria annulata	3862443
TA12370	mRNA	TA12370	NC_011099.1	1381850	1383280	D	TA12370	<1381850..>1383280	Theileria annulata	3862442
TA12360	mRNA	TA12360	NC_011099.1	1383357	1385700	D	TA12360	join(<1383357..1383953,1384034..1384523,1384552..1384658,1384698..1384828,1384870..1385003,1385058..1385155,1385187..1385423,1385456..1385520,1385553..>1385700)	Theileria annulata	3862440
TA12355	mRNA	TA12355	NC_011099.1	1385900	1386391	D	TA12355	join(<1385900..1385922,1385961..1386069,1386111..1386161,1386193..1386323,1386361..>1386391)	Theileria annulata	3862439
TA12350	mRNA	TA12350	NC_011099.1	1386605	1387400	D	TA12350	join(<1386605..1387007,1387049..1387195,1387225..>1387400)	Theileria annulata	3862438
TA12345	mRNA	TA12345	NC_011099.1	1387678	1389651	D	TA12345	join(<1387678..1387908,1387974..1388221,1388285..1388420,1388487..1388627,1388693..1388818,1388852..1389080,1389152..>1389651)	Theileria annulata	3862437
TA12340	mRNA	TA12340	NC_011099.1	1389816	1390365	R	TA12340	complement(join(<1389816..1389974,1390004..1390092,1390125..>1390365))	Theileria annulata	3862436
TA12335	mRNA	TA12335	NC_011099.1	1390598	1392955	D	TA12335	join(<1390598..1390851,1390921..1392136,1392171..1392489,1392543..1392769,1392848..>1392955)	Theileria annulata	3862435
TA12330	mRNA	TA12330	NC_011099.1	1393139	1395076	D	TA12330	join(<1393139..1393163,1393215..>1395076)	Theileria annulata	3862434
TA12325	mRNA	TA12325	NC_011099.1	1395294	1397443	D	TA12325	join(<1395294..1395662,1395702..1395815,1395845..1395953,1396026..1396836,1396903..1397157,1397218..>1397443)	Theileria annulata	3862433
TA12320	mRNA	TA12320	NC_011099.1	1397532	1399706	R	TA12320	complement(<1397532..>1399706)	Theileria annulata	3862432
TA12315	mRNA	TA12315	NC_011099.1	1399841	1400372	R	TA12315	complement(join(<1399841..1400012,1400048..1400263,1400299..1400321,1400355..>1400372))	Theileria annulata	3862067
TA12295	mRNA	TA12295	NC_011099.1	1402469	1404145	D	TA12295	join(<1402469..1403093,1403150..1403427,1403477..1403611,1403678..1403769,1403802..1403907,1403963..>1404145)	Theileria annulata	3862064
TA12290	mRNA	TA12290	NC_011099.1	1404340	1405979	D	TA12290	join(<1404340..1404433,1404499..1404569,1404599..1404709,1404742..1404782,1404823..1405585,1405617..>1405979)	Theileria annulata	3862063
TA12285	mRNA	TA12285	NC_011099.1	1406340	1412763	D	TA12285	join(<1406340..1406637,1406669..1407235,1407299..1411016,1411088..1411851,1411937..>1412763)	Theileria annulata	3862062
TA12280	mRNA	TA12280	NC_011099.1	1412906	1415572	D	TA12280	join(<1412906..1413119,1413213..1413502,1413546..1413644,1413693..1413789,1413849..1413946,1414031..1414102,1414134..1414235,1414291..1414414,1414504..1414731,1414775..1414825,1414857..1414907,1414992..1415176,1415209..1415316,1415376..1415454,1415487..>1415572)	Theileria annulata	3862061
TA12275	mRNA	TA12275	NC_011099.1	1415720	1417690	D	TA12275	join(<1415720..1415875,1415912..>1417690)	Theileria annulata	3862060
TA12270	mRNA	TA12270	NC_011099.1	1418755	1419795	D	TA12270	<1418755..>1419795	Theileria annulata	3862059
TA12265	mRNA	TA12265	NC_011099.1	1420308	1422278	D	TA12265	join(<1420308..1420463,1420500..>1422278)	Theileria annulata	3862058
TA12260	mRNA	TA12260	NC_011099.1	1423449	1424489	D	TA12260	<1423449..>1424489	Theileria annulata	3862057
TA12255	mRNA	TA12255	NC_011099.1	1425113	1425769	R	TA12255	complement(join(<1425113..1425521,1425561..>1425769))	Theileria annulata	3862056
TA12245	mRNA	TA12245	NC_011099.1	1425883	1426347	R	TA12245	complement(join(<1425883..1426005,1426078..1426188,1426228..>1426347))	Theileria annulata	3862054
TA12240	mRNA	TA12240	NC_011099.1	1426558	1427350	D	TA12240	join(<1426558..1426864,1426971..>1427350)	Theileria annulata	3862053
TA12235	mRNA	TA12235	NC_011099.1	1427517	1429964	R	TA12235	complement(join(<1427517..1427903,1427957..1428095,1428128..1428256,1428344..1428414,1428445..1428570,1428599..1428706,1428763..1428887,1428938..1429075,1429106..1429201,1429288..1429435,1429509..>1429964))	Theileria annulata	3862052
TA12230	mRNA	TA12230	NC_011099.1	1430318	1432468	D	TA12230	join(<1430318..1430695,1430757..1430955,1430999..1431147,1431195..1431371,1431450..1431995,1432100..>1432468)	Theileria annulata	3862051
TA12225	mRNA	TA12225	NC_011099.1	1432566	1433885	D	TA12225	join(<1432566..1433251,1433294..>1433885)	Theileria annulata	3862050
TA12220	mRNA	TA12220	NC_011099.1	1434384	1437904	D	TA12220	join(<1434384..1435587,1435653..1435972,1436057..1436665,1436742..1437016,1437082..>1437904)	Theileria annulata	3862049
TA12215	mRNA	TA12215	NC_011099.1	1438089	1438713	D	TA12215	join(<1438089..1438302,1438332..1438376,1438457..>1438713)	Theileria annulata	3862048
TA12210	mRNA	TA12210	NC_011099.1	1438783	1439463	R	TA12210	complement(<1438783..>1439463)	Theileria annulata	3861947
TA12205	mRNA	TA12205	NC_011099.1	1439836	1440684	D	TA12205	join(<1439836..1439904,1439942..1439986,1440016..>1440684)	Theileria annulata	3861946
TA12200	mRNA	TA12200	NC_011099.1	1440792	1443668	D	TA12200	join(<1440792..1441113,1441174..>1443668)	Theileria annulata	3861945
TA12190	mRNA	TA12190	NC_011099.1	1443719	1445194	R	TA12190	complement(<1443719..>1445194)	Theileria annulata	3861943
TA12185	mRNA	TA12185	NC_011099.1	1445631	1449176	D	TA12185	<1445631..>1449176	Theileria annulata	3861942
TA12180	mRNA	TA12180	NC_011099.1	1449247	1453196	D	TA12180	join(<1449247..1449625,1449707..1449925,1449956..1450112,1450142..1450279,1450312..1450441,1450472..1450599,1450629..1450729,1450766..1450903,1450933..1451177,1451206..1451312,1451342..1451447,1451479..1451635,1451667..1451822,1451851..1452105,1452134..1452302,1452332..1452483,1452514..>1453196)	Theileria annulata	3861941
TA12175	mRNA	TA12175	NC_011099.1	1453503	1456862	D	TA12175	<1453503..>1456862	Theileria annulata	3861940
TA12170	mRNA	TA12170	NC_011099.1	1456876	1457598	R	TA12170	complement(join(<1456876..1456984,1457114..1457177,1457212..1457243,1457337..1457443,1457536..>1457598))	Theileria annulata	3861939
TA12165	mRNA	TA12165	NC_011099.1	1457977	1458677	D	TA12165	join(<1457977..1458337,1458430..1458505,1458542..>1458677)	Theileria annulata	3861938
TA12160	mRNA	TA12160	NC_011099.1	1458801	1459283	D	TA12160	join(<1458801..1458873,1458903..1459204,1459239..>1459283)	Theileria annulata	3861937
TA12155	mRNA	TA12155	NC_011099.1	1459306	1459874	R	TA12155	complement(join(<1459306..1459345,1459376..1459528,1459561..1459702,1459745..>1459874))	Theileria annulata	3861936
TA12150	mRNA	TA12150	NC_011099.1	1460129	1461351	D	TA12150	join(<1460129..1460160,1460196..1460291,1460328..1460440,1460599..1460767,1460833..1460850,1460882..1460951,1460982..1461059,1461089..1461149,1461182..>1461351)	Theileria annulata	3861935
TA12145	mRNA	TA12145	NC_011099.1	1461612	1464485	D	TA12145	join(<1461612..1461977,1462009..1464129,1464159..1464333,1464364..>1464485)	Theileria annulata	3861934
TA12135	mRNA	TA12135	NC_011099.1	1464574	1466245	R	TA12135	complement(join(<1464574..1466040,1466192..>1466245))	Theileria annulata	3861932
TA12130	mRNA	TA12130	NC_011099.1	1466476	1467666	R	TA12130	complement(<1466476..>1467666)	Theileria annulata	3861931
TA12125	mRNA	TA12125	NC_011099.1	1468105	1470132	D	TA12125	join(<1468105..1468137,1468183..1468380,1468481..1468758,1468790..1469487,1469517..1469683,1469713..>1470132)	Theileria annulata	3861930
TA12120	mRNA	TA12120	NC_011099.1	1470572	1472443	R	TA12120	complement(join(<1470572..1471112,1471181..1471399,1471432..1471643,1471675..1471826,1471858..1471964,1472025..>1472443))	Theileria annulata	3861929
TA12115	mRNA	TA12115	NC_011099.1	1472820	1473665	R	TA12115	complement(<1472820..>1473665)	Theileria annulata	3862047
TA12110	mRNA	TA12110	NC_011099.1	1473682	1474334	R	TA12110	complement(join(<1473682..1473769,1473814..1474052,1474116..>1474334))	Theileria annulata	3862046
TA12105	mRNA	TA12105	NC_011099.1	1474807	1477590	R	TA12105	complement(join(<1474807..1475112,1475289..1475789,1476009..1477300,1477521..>1477590))	Theileria annulata	3862045
TA12100	mRNA	TA12100	NC_011099.1	1478723	1481538	D	TA12100	join(<1478723..1478829,1478983..1479199,1479277..1479859,1479896..1480140,1480174..1480289,1480371..>1481538)	Theileria annulata	3862044
TA12095	mRNA	TA12095	NC_011099.1	1481700	1482700	D	TA12095	join(<1481700..1481825,1481856..1481871,1481981..1482103,1482144..1482212,1482269..1482310,1482349..1482434,1482465..1482573,1482612..>1482700)	Theileria annulata	3862043
TA12090	mRNA	TA12090	NC_011099.1	1482725	1483514	R	TA12090	complement(join(<1482725..1482835,1482876..1482926,1482996..1483403,1483458..>1483514))	Theileria annulata	3862042
TA12085	mRNA	TA12085	NC_011099.1	1483729	1484397	D	TA12085	join(<1483729..1483807,1483840..1483941,1483986..1484229,1484271..>1484397)	Theileria annulata	3862041
TA12080	mRNA	TA12080	NC_011099.1	1484420	1485704	D	TA12080	join(<1484420..1484867,1484931..1485101,1485169..1485285,1485330..1485424,1485474..1485568,1485611..>1485704)	Theileria annulata	3862040
TA12075	mRNA	TA12075	NC_011099.1	1485907	1488783	D	TA12075	<1485907..>1488783	Theileria annulata	3862039
TA12070	mRNA	TA12070	NC_011099.1	1488946	1489761	D	TA12070	join(<1488946..1489536,1489596..1489695,1489727..>1489761)	Theileria annulata	3862038
TA12065	mRNA	TA12065	NC_011099.1	1490424	1492302	D	TA12065	join(<1490424..1490549,1490609..1491418,1491465..1491603,1491637..1491755,1491823..1491893,1491924..1492095,1492126..>1492302)	Theileria annulata	3862037
TA12060	mRNA	TA12060	NC_011099.1	1492552	1493008	D	TA12060	join(<1492552..1492672,1492854..>1493008)	Theileria annulata	3862036
TA12055	mRNA	TA12055	NC_011099.1	1493055	1493579	D	TA12055	<1493055..>1493579	Theileria annulata	3862035
TA12050	mRNA	TA12050	NC_011099.1	1494004	1500483	D	TA12050	join(<1494004..1494080,1494125..1498393,1498455..1498526,1498560..1498887,1498993..1499106,1499174..1499644,1499797..>1500483)	Theileria annulata	3862034
TA12045	mRNA	TA12045	NC_011099.1	1500672	1502366	R	TA12045	complement(<1500672..>1502366)	Theileria annulata	3862033
TA12040	mRNA	TA12040	NC_011099.1	1502964	1506632	R	TA12040	complement(join(<1502964..1503364,1503459..1504235,1504321..1505349,1505420..1505600,1505643..1506329,1506525..>1506632))	Theileria annulata	3862032
TA12030	mRNA	TA12030	NC_011099.1	1506852	1507672	R	TA12030	complement(join(<1506852..1506905,1506937..1507030,1507097..1507245,1507321..1507385,1507442..1507523,1507592..>1507672))	Theileria annulata	3862030
TA12025	mRNA	TA12025	NC_011099.1	1507952	1509075	R	TA12025	complement(join(<1507952..1508196,1508260..1508329,1508381..1508887,1508959..>1509075))	Theileria annulata	3862029
TA12020	mRNA	TA12020	NC_011099.1	1509700	1510983	D	TA12020	join(<1509700..1509876,1509908..1509975,1510064..1510433,1510484..1510547,1510589..1510690,1510727..1510782,1510812..1510888,1510941..>1510983)	Theileria annulata	3862028
TA12015	mRNA	TA12015	NC_011099.1	1511139	1512142	R	TA12015	complement(join(<1511139..1511260,1511410..>1512142))	Theileria annulata	3861987
TA12010	mRNA	TA12010	NC_011099.1	1512565	1514292	R	TA12010	complement(join(<1512565..1513080,1513163..1513359,1513456..1513555,1513630..1513806,1513993..>1514292))	Theileria annulata	3861986
TA12005	mRNA	TA12005	NC_011099.1	1514969	1516261	D	TA12005	<1514969..>1516261	Theileria annulata	3861985
TA12000	mRNA	TA12000	NC_011099.1	1517701	1518013	D	TA12000	join(<1517701..1517756,1517834..1517933,1518005..>1518013)	Theileria annulata	3861984
TA11995	mRNA	TA11995	NC_011099.1	1518086	1519777	R	TA11995	complement(<1518086..>1519777)	Theileria annulata	3861983
TA11990	mRNA	TA11990	NC_011099.1	1520654	1521146	D	TA11990	join(<1520654..1520824,1520916..>1521146)	Theileria annulata	3861982
TA11985	mRNA	TA11985	NC_011099.1	1521220	1523780	R	TA11985	complement(join(<1521220..1522620,1522663..1523614,1523671..>1523780))	Theileria annulata	3861981
TA11975	mRNA	TA11975	NC_011099.1	1523935	1525784	D	TA11975	join(<1523935..1523997,1524114..1524630,1524715..1525047,1525120..>1525784)	Theileria annulata	3861979
TA11970	mRNA	TA11970	NC_011099.1	1525919	1526457	R	TA11970	complement(join(<1525919..1526148,1526241..>1526457))	Theileria annulata	3861978
TA11965	mRNA	TA11965	NC_011099.1	1527227	1530538	D	TA11965	<1527227..>1530538	Theileria annulata	3861977
TA11960	mRNA	TA11960	NC_011099.1	1531611	1534541	D	TA11960	<1531611..>1534541	Theileria annulata	3861976
TA11955	mRNA	TA11955	NC_011099.1	1535410	1539249	D	TA11955	<1535410..>1539249	Theileria annulata	3861975
TA11950	mRNA	TA11950	NC_011099.1	1540144	1544022	D	TA11950	<1540144..>1544022	Theileria annulata	3861974
TA11945	mRNA	TA11945	NC_011099.1	1545190	1545984	D	TA11945	<1545190..>1545984	Theileria annulata	3861973
TA11940	mRNA	TA11940	NC_011099.1	1546201	1546989	D	TA11940	<1546201..>1546989	Theileria annulata	3861972
TA11935	mRNA	TA11935	NC_011099.1	1547350	1548102	D	TA11935	<1547350..>1548102	Theileria annulata	3861971
TA11930	mRNA	TA11930	NC_011099.1	1548364	1548663	R	TA11930	complement(<1548364..>1548663)	Theileria annulata	3861970
TA11915	mRNA	TA11915	NC_011099.1	1549046	1550107	D	TA11915	<1549046..>1550107	Theileria annulata	3862411
TA11910	mRNA	TA11910	NC_011099.1	1550712	1551473	D	TA11910	<1550712..>1551473	Theileria annulata	3862410
TA11905	mRNA	TA11905	NC_011099.1	1551842	1552441	D	TA11905	join(<1551842..1552122,1552315..>1552441)	Theileria annulata	3862409
TA11900	mRNA	TA11900	NC_011099.1	1552730	1553491	D	TA11900	<1552730..>1553491	Theileria annulata	3862408
TA11895	mRNA	TA11895	NC_011099.1	1554543	1555679	R	TA11895	complement(join(<1554543..1554905,1554949..1555018,1555047..1555262,1555330..1555419,1555526..1555603,1555642..>1555679))	Theileria annulata	3862407
TA11890	mRNA	TA11890	NC_011099.1	1555920	1556629	D	TA11890	join(<1555920..1556263,1556320..1556398,1556445..1556519,1556597..>1556629)	Theileria annulata	3862406
TA11885	mRNA	TA11885	NC_011099.1	1557117	1557576	D	TA11885	join(<1557117..1557272,1557337..>1557576)	Theileria annulata	3862405
TA11880	mRNA	TA11880	NC_011099.1	1557726	1558400	R	TA11880	complement(join(<1557726..1558056,1558158..1558301,1558372..>1558400))	Theileria annulata	3862404
TA11875	mRNA	TA11875	NC_011099.1	1558615	1559332	R	TA11875	complement(join(<1558615..1558666,1558699..1558769,1558828..1558956,1559045..>1559332))	Theileria annulata	3862403
TA11870	mRNA	TA11870	NC_011099.1	1559454	1561005	R	TA11870	complement(join(<1559454..1559690,1559895..1559975,1560010..1560105,1560136..1560264,1560301..1560443,1560540..>1561005))	Theileria annulata	3862402
TA11865	mRNA	TA11865	NC_011099.1	1561252	1561809	D	TA11865	<1561252..>1561809	Theileria annulata	3862401
TA11860	mRNA	TA11860	NC_011099.1	1561868	1562893	R	TA11860	complement(<1561868..>1562893)	Theileria annulata	3862400
TA11855	mRNA	TA11855	NC_011099.1	1562978	1563418	R	TA11855	complement(<1562978..>1563418)	Theileria annulata	3862399
TA11850	mRNA	TA11850	NC_011099.1	1563589	1564838	D	TA11850	join(<1563589..1563735,1563824..1563920,1563951..1564085,1564169..1564309,1564340..1564524,1564605..>1564838)	Theileria annulata	3862398
TA11845	mRNA	TA11845	NC_011099.1	1565607	1568043	D	TA11845	join(<1565607..1565731,1565838..>1568043)	Theileria annulata	3862397
TA11840	mRNA	TA11840	NC_011099.1	1568214	1571059	R	TA11840	complement(join(<1568214..1570407,1570449..1570603,1570722..1570865,1571012..>1571059))	Theileria annulata	3862396
TA11835	mRNA	TA11835	NC_011099.1	1571195	1574453	D	TA11835	join(<1571195..1571212,1571251..1573021,1573053..1573261,1573362..1573442,1573475..1574101,1574131..1574213,1574243..>1574453)	Theileria annulata	3862395
TA11830	mRNA	TA11830	NC_011099.1	1574522	1575790	R	TA11830	complement(join(<1574522..1574589,1574620..1574857,1574956..1575248,1575336..1575597,1575707..>1575790))	Theileria annulata	3862394
TA11825	mRNA	TA11825	NC_011099.1	1575830	1576759	R	TA11825	complement(<1575830..>1576759)	Theileria annulata	3862393
TA11820	mRNA	TA11820	NC_011099.1	1576892	1577615	D	TA11820	join(<1576892..1577023,1577052..1577144,1577179..1577490,1577526..>1577615)	Theileria annulata	3862431
TA11810	mRNA	TA11810	NC_011099.1	1577699	1579066	R	TA11810	complement(<1577699..>1579066)	Theileria annulata	3862429
TA11805	mRNA	TA11805	NC_011099.1	1579945	1581795	D	TA11805	join(<1579945..1580342,1580388..1580566,1580635..1580881,1580974..1581296,1581373..1581574,1581666..>1581795)	Theileria annulata	3862428
TA11800	mRNA	TA11800	NC_011099.1	1581863	1582579	R	TA11800	complement(join(<1581863..1581965,1581996..1582117,1582150..1582241,1582270..>1582579))	Theileria annulata	3862427
TA11795	mRNA	TA11795	NC_011099.1	1582795	1584055	D	TA11795	join(<1582795..1582917,1582998..1583092,1583152..1583223,1583254..>1584055)	Theileria annulata	3862426
TA11790	mRNA	TA11790	NC_011099.1	1584341	1585756	R	TA11790	complement(join(<1584341..1584406,1584435..1584515,1584595..1584772,1584821..1584910,1585018..1585520,1585601..>1585756))	Theileria annulata	3862425
TA11785	mRNA	TA11785	NC_011099.1	1586356	1587496	D	TA11785	join(<1586356..1587046,1587102..1587155,1587219..>1587496)	Theileria annulata	3862424
TA11780	mRNA	TA11780	NC_011099.1	1587621	1588566	D	TA11780	join(<1587621..1587932,1587988..1588083,1588127..1588212,1588242..1588288,1588320..1588366,1588406..1588424,1588454..>1588566)	Theileria annulata	3862423
TA11775	mRNA	TA11775	NC_011099.1	1588700	1591663	R	TA11775	complement(<1588700..>1591663)	Theileria annulata	3862422
TA11770	mRNA	TA11770	NC_011099.1	1592338	1593548	R	TA11770	complement(join(<1592338..1592444,1592481..1592557,1592638..1592716,1592881..1593040,1593084..1593144,1593175..>1593548))	Theileria annulata	3862421
TA11765	mRNA	TA11765	NC_011099.1	1593799	1595336	R	TA11765	complement(join(<1593799..1594103,1594136..1594236,1594303..1594436,1594487..1594545,1594611..1594814,1594844..1595080,1595153..>1595336))	Theileria annulata	3862420
TA11755	mRNA	TA11755	NC_011099.1	1595825	1597987	D	TA11755	<1595825..>1597987	Theileria annulata	3862418
TA11750	mRNA	TA11750	NC_011099.1	1598191	1598485	R	TA11750	complement(join(<1598191..1598374,1598412..>1598485))	Theileria annulata	3862417
TA11745	mRNA	TA11745	NC_011099.1	1599740	1602679	D	TA11745	join(<1599740..1600532,1600564..1601275,1601331..1601492,1601524..1601757,1601835..1601975,1602006..1602095,1602125..1602253,1602339..1602519,1602551..>1602679)	Theileria annulata	3862416
TA11740	mRNA	TA11740	NC_011099.1	1603089	1604693	D	TA11740	join(<1603089..1603403,1603436..1604068,1604163..>1604693)	Theileria annulata	3862415
TA11735	mRNA	TA11735	NC_011099.1	1604785	1608414	R	TA11735	complement(join(<1604785..1604835,1604880..1605022,1605083..1605149,1605273..1605863,1605956..1606162,1606275..1606817,1606872..1607071,1607124..1607219,1607279..1607595,1607627..1607937,1607996..1608076,1608108..1608149,1608188..1608240,1608315..>1608414))	Theileria annulata	3862414
TA11730	mRNA	TA11730	NC_011099.1	1608713	1609271	R	TA11730	complement(join(<1608713..1608886,1608954..1609066,1609217..>1609271))	Theileria annulata	3862413
TA11725	mRNA	TA11725	NC_011099.1	1609352	1613199	R	TA11725	complement(join(<1609352..1610165,1610195..>1613199))	Theileria annulata	3861697
TA11720	mRNA	TA11720	NC_011099.1	1613289	1615822	R	TA11720	complement(join(<1613289..1614097,1614129..1614440,1614517..>1615822))	Theileria annulata	3861696
TA11715	mRNA	TA11715	NC_011099.1	1617794	1621736	D	TA11715	join(<1617794..1621013,1621111..>1621736)	Theileria annulata	3861695
TA11710	mRNA	TA11710	NC_011099.1	1622189	1625225	D	TA11710	join(<1622189..1622237,1622413..1624801,1624901..>1625225)	Theileria annulata	3861694
TA11700	mRNA	TA11700	NC_011099.1	1625285	1627988	D	TA11700	join(<1625285..1625347,1625382..1625470,1625506..1625708,1625895..1626176,1626208..1626293,1626332..1626514,1626545..1626616,1626647..1626868,1626915..1627310,1627366..1627593,1627629..1627760,1627809..>1627988)	Theileria annulata	3861692
TA11695	mRNA	TA11695	NC_011099.1	1628186	1629634	D	TA11695	join(<1628186..1628396,1628431..1628605,1628641..1628998,1629105..1629149,1629183..1629329,1629364..1629444,1629481..1629547,1629585..>1629634)	Theileria annulata	3861691
TA11690	mRNA	TA11690	NC_011099.1	1629967	1634703	D	TA11690	join(<1629967..1630152,1630185..1630494,1630528..1630560,1630590..1632877,1632935..1633158,1633197..>1634703)	Theileria annulata	3861690
TA11685	mRNA	TA11685	NC_011099.1	1634763	1636356	R	TA11685	complement(join(<1634763..1635610,1635642..>1636356))	Theileria annulata	3861689
TA11680	mRNA	TA11680	NC_011099.1	1636554	1639240	D	TA11680	join(<1636554..1637595,1637680..1637879,1637911..1638122,1638151..1638347,1638378..1638802,1638834..1639085,1639115..>1639240)	Theileria annulata	3861688
TA11675	mRNA	TA11675	NC_011099.1	1639694	1644097	R	TA11675	complement(<1639694..>1644097)	Theileria annulata	3861687
TA11670	mRNA	TA11670	NC_011099.1	1644324	1646945	R	TA11670	complement(<1644324..>1646945)	Theileria annulata	3861686
TA11665	mRNA	TA11665	NC_011099.1	1647078	1649432	R	TA11665	complement(<1647078..>1649432)	Theileria annulata	3861685
TA11660	mRNA	TA11660	NC_011099.1	1651257	1655437	R	TA11660	complement(join(<1651257..1651831,1651961..1652553,1652591..1652756,1652791..1652865,1652897..1653014,1653066..1653452,1653512..>1655437))	Theileria annulata	3861684
TA11655	mRNA	TA11655	NC_011099.1	1656225	1656563	D	TA11655	join(<1656225..1656438,1656514..>1656563)	Theileria annulata	3861683
TA11640	mRNA	TA11640	NC_011099.1	1656612	1657215	D	TA11640	join(<1656612..1656694,1656735..1656795,1656831..1656939,1656995..>1657215)	Theileria annulata	3861680
TA11635	mRNA	TA11635	NC_011099.1	1657455	1658055	D	TA11635	join(<1657455..1657532,1657568..1657743,1657773..>1658055)	Theileria annulata	3861679
TA11630	mRNA	TA11630	NC_011099.1	1658200	1662661	R	TA11630	complement(join(<1658200..1658376,1658439..1658616,1658661..1658863,1658901..1658960,1658991..1659135,1659167..1659242,1659289..1659454,1659493..1659613,1659643..1659747,1659778..1659927,1659982..1660062,1660092..1660225,1660257..1660288,1660328..1660410,1660454..1660484,1660515..1660697,1660743..1660833,1660864..1660940,1660970..1661085,1661116..1661240,1661274..1661372,1661402..1661507,1661537..1661653,1661687..1661854,1661884..1661919,1661950..1662040,1662072..1662156,1662185..1662226,1662256..1662321,1662352..1662504,1662539..>1662661))	Theileria annulata	3861678
TA11625	mRNA	TA11625	NC_011099.1	1663354	1664626	D	TA11625	join(<1663354..1663633,1663674..>1664626)	Theileria annulata	3861890
TA11620	mRNA	TA11620	NC_011099.1	1664815	1667631	D	TA11620	join(<1664815..1664987,1665020..1666057,1666090..1666098,1666170..1666278,1666311..1666693,1666851..>1667631)	Theileria annulata	3861889
TA11615	mRNA	TA11615	NC_011099.1	1667879	1670006	D	TA11615	join(<1667879..1667941,1667976..1668571,1668608..>1670006)	Theileria annulata	3861888
TA11610	mRNA	TA11610	NC_011099.1	1670249	1672189	R	TA11610	complement(<1670249..>1672189)	Theileria annulata	3861887
TA11605	mRNA	TA11605	NC_011099.1	1672937	1673443	R	TA11605	complement(<1672937..>1673443)	Theileria annulata	3861886
TA11600	mRNA	TA11600	NC_011099.1	1673746	1676479	D	TA11600	join(<1673746..1675777,1675830..1675937,1675989..>1676479)	Theileria annulata	3861885
TA11595	mRNA	TA11595	NC_011099.1	1676596	1677283	R	TA11595	complement(join(<1676596..1676691,1676723..1676836,1676877..1677017,1677056..>1677283))	Theileria annulata	3861884
TA11585	mRNA	TA11585	NC_011099.1	1677317	1679864	R	TA11585	complement(join(<1677317..1677667,1677699..1677849,1677882..1677988,1678024..1678873,1678913..1679156,1679187..1679403,1679435..1679566,1679604..>1679864))	Theileria annulata	3861882
TA11580	mRNA	TA11580	NC_011099.1	1679967	1682396	R	TA11580	complement(join(<1679967..1680027,1680064..1680240,1680271..1680407,1680436..1680759,1680790..1680942,1681007..1681356,1681389..1681476,1681507..1681657,1681688..1682166,1682199..>1682396))	Theileria annulata	3861881
TA11575	mRNA	TA11575	NC_011099.1	1682637	1683416	R	TA11575	complement(join(<1682637..1682681,1682728..1682885,1682924..1682996,1683044..1683177,1683314..>1683416))	Theileria annulata	3861880
TA11570	mRNA	TA11570	NC_011099.1	1684016	1684921	D	TA11570	<1684016..>1684921	Theileria annulata	3861879
TA11565	mRNA	TA11565	NC_011099.1	1685503	1686744	D	TA11565	<1685503..>1686744	Theileria annulata	3861878
TA11560	mRNA	TA11560	NC_011099.1	1687175	1688723	D	TA11560	join(<1687175..1687267,1687309..1687621,1687678..>1688723)	Theileria annulata	3861877
TA11555	mRNA	TA11555	NC_011099.1	1688821	1690125	D	TA11555	<1688821..>1690125	Theileria annulata	3861876
TA11550	mRNA	TA11550	NC_011099.1	1690809	1691653	R	TA11550	complement(join(<1690809..1690937,1690967..1691161,1691194..1691340,1691376..1691543,1691576..>1691653))	Theileria annulata	3861875
TA11545	mRNA	TA11545	NC_011099.1	1692016	1693067	D	TA11545	join(<1692016..1692832,1692862..>1693067)	Theileria annulata	3861874
TA11540	mRNA	TA11540	NC_011099.1	1693112	1695211	R	TA11540	complement(<1693112..>1695211)	Theileria annulata	3861873
TA11535	mRNA	TA11535	NC_011099.1	1695518	1696168	D	TA11535	join(<1695518..1695808,1695842..>1696168)	Theileria annulata	3861872
TA11530	mRNA	TA11530	NC_011099.1	1696257	1697608	D	TA11530	join(<1696257..1696991,1697031..1697294,1697366..>1697608)	Theileria annulata	3862372
TA11525	mRNA	TA11525	NC_011099.1	1697693	1700515	R	TA11525	complement(join(<1697693..1697917,1697961..1698598,1698646..1698745,1698817..1698952,1698984..1699052,1699083..1699165,1699214..1699317,1699357..1699512,1699560..1699669,1699703..1699785,1699818..1699958,1700004..1700162,1700194..1700433,1700474..>1700515))	Theileria annulata	3862371
TA11520	mRNA	TA11520	NC_011099.1	1700840	1703639	D	TA11520	join(<1700840..1700974,1701008..1701367,1701397..1701458,1701488..1701683,1701713..1701925,1701959..1702104,1702157..1702257,1702287..1702808,1702837..1702967,1702998..1703273,1703305..1703442,1703472..>1703639)	Theileria annulata	3862370
TA11515	mRNA	TA11515	NC_011099.1	1704140	1704544	D	TA11515	<1704140..>1704544	Theileria annulata	3862369
TA11510	mRNA	TA11510	NC_011099.1	1704797	1706243	D	TA11510	join(<1704797..1704824,1704866..1705114,1705150..1705319,1705351..1705498,1705531..1705607,1705641..1705720,1705750..1706115,1706144..>1706243)	Theileria annulata	3862368
TA11505	mRNA	TA11505	NC_011099.1	1706338	1707269	R	TA11505	complement(join(<1706338..1706498,1706531..1706654,1706703..1706937,1706968..>1707269))	Theileria annulata	3862367
TA11500	mRNA	TA11500	NC_011099.1	1708043	1710227	D	TA11500	join(<1708043..1708115,1708169..1708410,1708439..1708701,1708734..1708885,1708923..1709166,1709198..1709343,1709374..1709498,1709527..1709625,1709667..1709753,1709784..1709914,1709952..1710053,1710083..>1710227)	Theileria annulata	3862366
TA11495	mRNA	TA11495	NC_011099.1	1710293	1711520	R	TA11495	complement(join(<1710293..1710730,1710789..1710873,1710904..>1711520))	Theileria annulata	3862365
TA11490	mRNA	TA11490	NC_011099.1	1712987	1714258	D	TA11490	<1712987..>1714258	Theileria annulata	3862364
TA11475	mRNA	TA11475	NC_011099.1	1714358	1715830	R	TA11475	complement(join(<1714358..1714441,1714473..1714568,1714619..1714801,1714871..1714928,1715006..1715046,1715076..1715185,1715224..1715299,1715330..1715425,1715455..1715526,1715556..1715678,1715717..>1715830))	Theileria annulata	3862361
TA11470	mRNA	TA11470	NC_011099.1	1716733	1718170	D	TA11470	join(<1716733..1717074,1717105..1717342,1717414..1717891,1717958..1718084,1718153..>1718170)	Theileria annulata	3862360
TA11465	mRNA	TA11465	NC_011099.1	1718197	1719808	R	TA11465	complement(join(<1718197..1718275,1718307..1719006,1719044..1719286,1719317..1719349,1719426..1719629,1719662..1719712,1719745..>1719808))	Theileria annulata	3862359
TA11460	mRNA	TA11460	NC_011099.1	1720556	1721362	D	TA11460	join(<1720556..1720770,1720801..1720894,1720925..1721064,1721150..1721302,1721335..>1721362)	Theileria annulata	3862358
TA11455	mRNA	TA11455	NC_011099.1	1721440	1722544	R	TA11455	complement(join(<1721440..1722251,1722493..>1722544))	Theileria annulata	3862357
TA11450	mRNA	TA11450	NC_011099.1	1722868	1727739	R	TA11450	complement(<1722868..>1727739)	Theileria annulata	3862356
TA11445	mRNA	TA11445	NC_011099.1	1728877	1729640	R	TA11445	complement(join(<1728877..1729157,1729191..1729261,1729329..1729366,1729425..>1729640))	Theileria annulata	3862355
TA11440	mRNA	TA11440	NC_011099.1	1729738	1733984	R	TA11440	complement(join(<1729738..1730042,1730103..1730226,1730299..1731707,1731776..>1733984))	Theileria annulata	3862354
TA11435	mRNA	TA11435	NC_011099.1	1734397	1734842	D	TA11435	join(<1734397..1734507,1734542..1734626,1734658..>1734842)	Theileria annulata	3862353
TA11430	mRNA	TA11430	NC_011099.1	1734878	1737139	R	TA11430	complement(<1734878..>1737139)	Theileria annulata	3861772
TA16085	mRNA	TA16085	NC_011099.1	1737617	1738299	D	TA16085	join(<1737617..1737754,1737785..1737944,1737981..1738157,1738196..>1738299)	Theileria annulata	3862313
TA16080	mRNA	TA16080	NC_011099.1	1738596	1741770	D	TA16080	join(<1738596..1739041,1739104..1739223,1739271..>1741770)	Theileria annulata	3862312
TA16075	mRNA	TA16075	NC_011099.1	1741808	1743865	R	TA16075	complement(join(<1741808..1742073,1742103..1742347,1742409..1742479,1742509..1742603,1742644..1743007,1743076..1743209,1743240..1743389,1743421..>1743865))	Theileria annulata	3862311
TA16070	mRNA	TA16070	NC_011099.1	1744073	1745315	D	TA16070	join(<1744073..1744360,1744391..1744445,1744475..1744522,1744558..>1745315)	Theileria annulata	3862310
TA16065	mRNA	TA16065	NC_011099.1	1745741	1748732	D	TA16065	join(<1745741..1745996,1746042..1747242,1747272..1747747,1747777..1748595,1748626..>1748732)	Theileria annulata	3862309
TA16060	mRNA	TA16060	NC_011099.1	1748768	1750932	D	TA16060	join(<1748768..1749028,1749074..1749111,1749145..1749289,1749323..1750207,1750237..>1750932)	Theileria annulata	3862308
TA15995	mRNA	TA15995	NC_011099.1	1751112	1753383	R	TA15995	complement(join(<1751112..1751525,1751588..1752160,1752212..1753109,1753147..1753231,1753269..>1753383))	Theileria annulata	3861845
TA15990	mRNA	TA15990	NC_011099.1	1753528	1753924	D	TA15990	join(<1753528..1753552,1753593..1753678,1753721..1753816,1753847..>1753924)	Theileria annulata	3861844
TA15885	mRNA	TA15885	NC_011099.1	1753962	1754882	R	TA15885	complement(<1753962..>1754882)	Theileria annulata	3861862
TA15880	mRNA	TA15880	NC_011099.1	1754976	1756430	D	TA15880	join(<1754976..1755120,1755163..1755189,1755231..1755293,1755358..1755484,1755517..1755776,1755806..1755992,1756022..>1756430)	Theileria annulata	3861861
TA15775	mRNA	TA15775	NC_011099.1	1756506	1757362	R	TA15775	complement(join(<1756506..1756863,1756899..1757046,1757087..1757189,1757228..>1757362))	Theileria annulata	3861995
TA15770	mRNA	TA15770	NC_011099.1	1757560	1758654	D	TA15770	<1757560..>1758654	Theileria annulata	3861994
TA15715	mRNA	TA15715	NC_011099.1	1759574	1761384	D	TA15715	join(<1759574..1760525,1760594..>1761384)	Theileria annulata	3862121
TA15660	mRNA	TA15660	NC_011099.1	1761772	1763291	D	TA15660	join(<1761772..1762420,1762477..>1763291)	Theileria annulata	3862110
TA15605	mRNA	TA15605	NC_011099.1	1763566	1763955	D	TA15605	<1763566..>1763955	Theileria annulata	3862157
TA15550	mRNA	TA15550	NC_011099.1	1764117	1765649	D	TA15550	join(<1764117..1764487,1764521..1764609,1764640..1764779,1764811..1764858,1764889..1764988,1765021..>1765649)	Theileria annulata	3862146
TA15495	mRNA	TA15495	NC_011099.1	1765733	1768292	D	TA15495	join(<1765733..1765890,1766004..1766141,1766175..1766271,1766332..1766363,1766395..1766589,1766629..1766701,1766735..1766803,1766835..1767080,1767151..1767292,1767325..1767437,1767493..1767610,1767644..1767719,1767749..1767838,1767868..1767940,1767971..1768078,1768112..1768174,1768206..>1768292)	Theileria annulata	3861621
TA15440	mRNA	TA15440	NC_011099.1	1768662	1769472	D	TA15440	join(<1768662..1768940,1769000..1769106,1769153..1769220,1769255..1769331,1769365..>1769472)	Theileria annulata	3861585
TA15385	mRNA	TA15385	NC_011099.1	1770066	1770869	D	TA15385	join(<1770066..1770287,1770359..1770559,1770624..>1770869)	Theileria annulata	3861574
TA15280	mRNA	TA15280	NC_011099.1	1771148	1772157	R	TA15280	complement(join(<1771148..1771615,1771694..1771807,1771864..>1772157))	Theileria annulata	3861742
TA15275	mRNA	TA15275	NC_011099.1	1772729	1773223	D	TA15275	<1772729..>1773223	Theileria annulata	3861741
TA15220	mRNA	TA15220	NC_011099.1	1773769	1774251	D	TA15220	<1773769..>1774251	Theileria annulata	3861663
TA15115	mRNA	TA15115	NC_011099.1	1774377	1775654	R	TA15115	complement(join(<1774377..1774715,1774746..1774877,1774939..1775016,1775047..1775378,1775426..>1775654))	Theileria annulata	3862196
TA15060	mRNA	TA15060	NC_011099.1	1775903	1778029	R	TA15060	complement(<1775903..>1778029)	Theileria annulata	3862185
TA15005	mRNA	TA15005	NC_011099.1	1778782	1781000	R	TA15005	complement(join(<1778782..1779730,1779826..1780323,1780455..1780649,1780762..>1781000))	Theileria annulata	3862213
TA15000	mRNA	TA15000	NC_011099.1	1781355	1782271	D	TA15000	join(<1781355..1781708,1781757..1781850,1781892..>1782271)	Theileria annulata	3862212
TA14895	mRNA	TA14895	NC_011099.1	1784338	1785138	R	TA14895	complement(<1784338..>1785138)	Theileria annulata	3862230
TA14890	mRNA	TA14890	NC_011099.1	1786383	1787602	D	TA14890	join(<1786383..1786455,1786700..1787520,1787576..>1787602)	Theileria annulata	3862229
TA14785	mRNA	TA14785	NC_011099.1	1787605	1788821	R	TA14785	complement(join(<1787605..1787710,1787748..1787798,1787913..1788115,1788162..1788290,1788321..1788581,1788690..>1788821))	Theileria annulata	3862287
TA14730	mRNA	TA14730	NC_011099.1	1789337	1789685	R	TA14730	complement(join(<1789337..1789423,1789493..1789558,1789650..>1789685))	Theileria annulata	3862346
TA14725	mRNA	TA14725	NC_011099.1	1790486	1791437	D	TA14725	join(<1790486..1790654,1790778..1791106,1791163..1791208,1791238..>1791437)	Theileria annulata	3862345
TA14670	mRNA	TA14670	NC_011099.1	1791760	1793953	D	TA14670	join(<1791760..1792996,1793079..>1793953)	Theileria annulata	3862334
TA14565	mRNA	TA14565	NC_011099.1	1793993	1794552	R	TA14565	complement(join(<1793993..1794074,1794105..1794218,1794302..>1794552))	Theileria annulata	3862507
TA14510	mRNA	TA14510	NC_011099.1	1794996	1796466	R	TA14510	complement(join(<1794996..1795496,1795531..>1796466))	Theileria annulata	3862496
TA14505	mRNA	TA14505	NC_011099.1	1796696	1797854	D	TA14505	join(<1796696..1796849,1796884..1797015,1797047..1797156,1797194..1797255,1797334..1797574,1797636..>1797854)	Theileria annulata	3862495
TA14400	mRNA	TA14400	NC_011099.1	1797946	1801242	R	TA14400	complement(join(<1797946..1798276,1798347..1798516,1798566..1799839,1799890..1800049,1800106..1800515,1800555..1800989,1801029..>1801242))	Theileria annulata	3862171
TA14395	mRNA	TA14395	NC_011099.1	1801468	1803139	D	TA14395	join(<1801468..1801781,1801819..1801954,1802042..1802230,1802302..1802394,1802444..>1803139)	Theileria annulata	3862170
TA14290	mRNA	TA14290	NC_011099.1	1803206	1804767	R	TA14290	complement(join(<1803206..1803274,1803344..1804328,1804363..1804542,1804580..1804610,1804704..>1804767))	Theileria annulata	3861634
TA14235	mRNA	TA14235	NC_011099.1	1805435	1807050	R	TA14235	complement(join(<1805435..1805758,1805801..1806975,1807032..>1807050))	Theileria annulata	3862099
TA14180	mRNA	TA14180	NC_011099.1	1807249	1808205	R	TA14180	complement(join(<1807249..1807374,1807456..>1808205))	Theileria annulata	3862088
TA14175	mRNA	TA14175	NC_011099.1	1809897	1813497	D	TA14175	join(<1809897..1813103,1813204..>1813497)	Theileria annulata	3862087
TA14070	mRNA	TA14070	NC_011099.1	1813580	1814614	R	TA14070	complement(<1813580..>1814614)	Theileria annulata	3861736
TA14065	mRNA	TA14065	NC_011099.1	1815086	1815854	D	TA14065	join(<1815086..1815137,1815180..1815406,1815459..1815527,1815636..>1815854)	Theileria annulata	3861735
TA13960	mRNA	TA13960	NC_011099.1	1816015	1816868	R	TA13960	complement(join(<1816015..1816191,1816263..>1816868))	Theileria annulata	3861926
TA13955	mRNA	TA13955	NC_011099.1	1817518	1818321	D	TA13955	<1817518..>1818321	Theileria annulata	3861925
TA13900	mRNA	TA13900	NC_011099.1	1818737	1819129	D	TA13900	<1818737..>1819129	Theileria annulata	3861914
TA13795	mRNA	TA13795	NC_011099.1	1819258	1820757	R	TA13795	complement(join(<1819258..1820389,1820476..1820689,1820724..>1820757))	Theileria annulata	3861796
TA13740	mRNA	TA13740	NC_011099.1	1821366	1824138	R	TA13740	complement(join(<1821366..1821476,1821574..>1824138))	Theileria annulata	3861902
TA13735	mRNA	TA13735	NC_011099.1	1824872	1825760	D	TA13735	join(<1824872..1824902,1825012..>1825760)	Theileria annulata	3861901
TA13630	mRNA	TA13630	NC_011099.1	1825825	1828081	R	TA13630	complement(join(<1825825..1825998,1826028..1826096,1826157..1826227,1826312..1826395,1826426..1826627,1826714..>1828081))	Theileria annulata	3861822
TA13575	mRNA	TA13575	NC_011099.1	1828215	1831284	R	TA13575	complement(join(<1828215..1828342,1828406..1828861,1828947..1829042,1829190..1830119,1830249..>1831284))	Theileria annulata	3862468
TA13570	mRNA	TA13570	NC_011099.1	1831866	1832978	D	TA13570	<1831866..>1832978	Theileria annulata	3862467
TA13465	mRNA	TA13465	NC_011099.1	1833082	1835255	R	TA13465	complement(join(<1833082..1833117,1833149..1833214,1833303..1833517,1833546..1833643,1833693..1833763,1833889..1833963,1834057..1834143,1834201..1834374,1834432..1834581,1834653..1834724,1834757..1834804,1834942..1835109,1835139..>1835255))	Theileria annulata	3861964
TA13410	mRNA	TA13410	NC_011099.1	1835793	1837148	R	TA13410	complement(join(<1835793..1836684,1836780..1836921,1837040..>1837148))	Theileria annulata	3861953
TA13405	mRNA	TA13405	NC_011099.1	1837415	1842611	D	TA13405	join(<1837415..1837842,1837894..1840262,1840366..1842019,1842077..>1842611)	Theileria annulata	3861952
TA13350	mRNA	TA13350	NC_011099.1	1842856	1844706	D	TA13350	<1842856..>1844706	Theileria annulata	3861559
TA13245	mRNA	TA13245	NC_011099.1	1844890	1850539	R	TA13245	complement(join(<1844890..1846668,1846798..1847240,1847286..1847300,1847432..1848295,1848437..1849633,1849760..1850053,1850234..1850266,1850365..>1850539))	Theileria annulata	3862253
TA13190	mRNA	TA13190	NC_011099.1	1851246	1851759	R	TA13190	complement(join(<1851246..1851627,1851677..>1851759))	Theileria annulata	3862086
TA13185	mRNA	TA13185	NC_011099.1	1852048	1852921	D	TA13185	join(<1852048..1852329,1852530..1852647,1852731..>1852921)	Theileria annulata	3862085
TA13130	mRNA	TA13130	NC_011099.1	1853338	1855158	D	TA13130	<1853338..>1855158	Theileria annulata	3862074
TA13025	mRNA	TA13025	NC_011099.1	1855488	1856371	R	TA13025	complement(join(<1855488..1855819,1855882..>1856371))	Theileria annulata	3862013
TA12970	mRNA	TA12970	NC_011099.1	1856723	1858506	R	TA12970	complement(join(<1856723..1857148,1857322..1857741,1857937..1858180,1858358..>1858506))	Theileria annulata	3862483
TA12915	mRNA	TA12915	NC_011099.1	1858951	1860091	R	TA12915	complement(join(<1858951..1859051,1859229..1859512,1859664..>1860091))	Theileria annulata	3862472
TA12910	mRNA	TA12910	NC_011099.1	1860848	1861983	D	TA12910	join(<1860848..1860851,1861013..>1861983)	Theileria annulata	3862471
TA12805	mRNA	TA12805	NC_011099.1	1862271	1863281	R	TA12805	complement(join(<1862271..1863044,1863141..>1863281))	Theileria annulata	3861773
TA12750	mRNA	TA12750	NC_011099.1	1863660	1865264	R	TA12750	complement(join(<1863660..1863815,1863996..1864939,1865222..>1865264))	Theileria annulata	3862134
TA12695	mRNA	TA12695	NC_011099.1	1865660	1867588	R	TA12695	complement(join(<1865660..1866024,1866106..1866337,1866564..1867249,1867403..1867450,1867537..>1867588))	Theileria annulata	3862280
TA12690	mRNA	TA12690	NC_011099.1	1868362	1869702	D	TA12690	<1868362..>1869702	Theileria annulata	3862279
TA12635	mRNA	TA12635	NC_011099.1	1870307	1872346	D	TA12635	<1870307..>1872346	Theileria annulata	3862268
TA12580	mRNA	TA12580	NC_011099.1	1873761	1875611	D	TA12580	<1873761..>1875611	Theileria annulata	3861711
TA12525	mRNA	TA12525	NC_011099.1	1877026	1878984	D	TA12525	<1877026..>1878984	Theileria annulata	3861700
TA12420	mRNA	TA12420	NC_011099.1	1879432	1880272	R	TA12420	complement(join(<1879432..1879503,1879551..1879618,1879806..1879906,1880097..>1880272))	Theileria annulata	3862315
TA12365	mRNA	TA12365	NC_011099.1	1880689	1881138	R	TA12365	complement(<1880689..>1881138)	Theileria annulata	3862441
TA12310	mRNA	TA12310	NC_011099.1	1881423	1882800	R	TA12310	complement(join(<1881423..1881918,1882100..>1882800))	Theileria annulata	3862066
TA12305	mRNA	TA12305	NC_011099.1	1883220	1886613	D	TA12305	join(<1883220..1883901,1883999..1884914,1885042..1885176,1885336..1885555,1885644..1885777,1885911..1886028,1886046..1886224,1886244..1886348,1886451..>1886613)	Theileria annulata	3862065
TA12250	mRNA	TA12250	NC_011099.1	1887087	1889033	D	TA12250	<1887087..>1889033	Theileria annulata	3862055
TA12195	mRNA	TA12195	NC_011099.1	1889214	1890680	D	TA12195	<1889214..>1890680	Theileria annulata	3861944
TA12140	mRNA	TA12140	NC_011099.1	1890941	1892560	D	TA12140	<1890941..>1892560	Theileria annulata	3861933
TA12035	mRNA	TA12035	NC_011099.1	1892670	1897435	R	TA12035	complement(join(<1892670..1896623,1896851..>1897435))	Theileria annulata	3862031
TA11980	mRNA	TA11980	NC_011099.1	1897610	1898159	R	TA11980	complement(join(<1897610..1897664,1897702..1897871,1897989..>1898159))	Theileria annulata	3861980
TA11925	mRNA	TA11925	NC_011099.1	1898451	1899421	R	TA11925	complement(join(<1898451..1898573,1898624..1898830,1898924..1899170,1899210..>1899421))	Theileria annulata	3861969
TA11920	mRNA	TA11920	NC_011099.1	1899572	1900803	D	TA11920	join(<1899572..1899869,1900016..>1900803)	Theileria annulata	3862412
TA11815	mRNA	TA11815	NC_011099.1	1901228	1903011	R	TA11815	complement(join(<1901228..1901476,1901596..>1903011))	Theileria annulata	3862430
TA11760	mRNA	TA11760	NC_011099.1	1903158	1904975	R	TA11760	complement(join(<1903158..1904340,1904377..>1904975))	Theileria annulata	3862419
TA11705	mRNA	TA11705	NC_011099.1	1905123	1909799	R	TA11705	complement(join(<1905123..1905356,1905427..1905550,1905640..1905983,1906097..1906193,1906362..1906663,1906773..1907295,1907402..1907499,1907575..1907668,1907785..1909640,1909779..>1909799))	Theileria annulata	3861693
TA11650	mRNA	TA11650	NC_011099.1	1909986	1911362	R	TA11650	complement(join(<1909986..1910089,1910158..1910290,1910353..1910511,1910564..1910910,1911055..1911174,1911299..>1911362))	Theileria annulata	3861682
TA11645	mRNA	TA11645	NC_011099.1	1911594	1912784	D	TA11645	join(<1911594..1911681,1911724..1911769,1911925..1912534,1912572..>1912784)	Theileria annulata	3861681
TA11590	mRNA	TA11590	NC_011099.1	1913058	1915361	D	TA11590	<1913058..>1915361	Theileria annulata	3861883
TA11485	mRNA	TA11485	NC_011099.1	1915451	1920520	R	TA11485	complement(<1915451..>1920520)	Theileria annulata	3862363
TA11480	mRNA	TA11480	NC_011099.1	1921082	1922416	D	TA11480	<1921082..>1922416	Theileria annulata	3862362
TA11425	mRNA	TA11425	NC_011099.1	1922938	1927521	R	TA11425	complement(<1922938..>1927521)	Theileria annulata	3861771
TA11420	mRNA	TA11420	NC_011099.1	1928676	1931633	D	TA11420	join(<1928676..1929958,1929998..1930435,1930481..1930894,1930928..>1931633)	Theileria annulata	3861770
TA11415	mRNA	TA11415	NC_011099.1	1932888	1934876	D	TA11415	<1932888..>1934876	Theileria annulata	3861769
TA11410	mRNA	TA11410	NC_011099.1	1935169	1936044	D	TA11410	<1935169..>1936044	Theileria annulata	3861768
TA11405	mRNA	TA11405	NC_011099.1	1936306	1937631	D	TA11405	<1936306..>1937631	Theileria annulata	3861767
TA11400	mRNA	TA11400	NC_011099.1	1938366	1940765	D	TA11400	<1938366..>1940765	Theileria annulata	3861766
TA11395	mRNA	TA11395	NC_011099.1	1941191	1942687	D	TA11395	<1941191..>1942687	Theileria annulata	3861765
TA11390	mRNA	TA11390	NC_011099.1	1942993	1944585	D	TA11390	<1942993..>1944585	Theileria annulata	3861764
TA11385	mRNA	TA11385	NC_011099.1	1945039	1947288	D	TA11385	<1945039..>1947288	Theileria annulata	3861763
TA09420	mRNA	TA09420	NC_011099.1	1947519	1948880	D	TA09420	<1947519..>1948880	Theileria annulata	3861756
TA09425	mRNA	TA09425	NC_011099.1	1949082	1950743	D	TA09425	<1949082..>1950743	Theileria annulata	3861757
TA09430	mRNA	TA09430	NC_011099.1	1950994	1952640	D	TA09430	<1950994..>1952640	Theileria annulata	3861758
TA09435	mRNA	TA09435	NC_011099.1	1953343	1954290	D	TA09435	<1953343..>1954290	Theileria annulata	3861759
TA09440	mRNA	TA09440	NC_011099.1	1954963	1959120	R	TA09440	complement(join(<1954963..1955118,1955146..>1959120))	Theileria annulata	3861760
TA09445	mRNA	TA09445	NC_011099.1	1961396	1964125	D	TA09445	<1961396..>1964125	Theileria annulata	3861761
TA09450	mRNA	TA09450	NC_011099.1	1967600	1976875	D	TA09450	<1967600..>1976875	Theileria annulata	3861762
TA17565	mRNA	TA17565	NC_011100.1	2557	6069	R	TA17565	complement(<2557..>6069)	Theileria annulata	3864585
TA17560	mRNA	TA17560	NC_011100.1	7552	8335	R	TA17560	complement(join(<7552..7860,7919..>8335))	Theileria annulata	3864584
TA17555	mRNA	TA17555	NC_011100.1	9537	11222	D	TA17555	<9537..>11222	Theileria annulata	3864583
TA17550	mRNA	TA17550	NC_011100.1	11545	13278	D	TA17550	<11545..>13278	Theileria annulata	3864582
TA17545	mRNA	TA17545	NC_011100.1	14073	15323	R	TA17545	complement(<14073..>15323)	Theileria annulata	3864581
TA17540	mRNA	TA17540	NC_011100.1	15865	17595	R	TA17540	complement(<15865..>17595)	Theileria annulata	3864580
TA17535	mRNA	TA17535	NC_011100.1	17903	20356	R	TA17535	complement(<17903..>20356)	Theileria annulata	3864579
TA02740	mRNA	TA02740	NC_011100.1	20629	22206	R	TA02740	complement(<20629..>22206)	Theileria annulata	3864974
TA02735	mRNA	TA02735	NC_011100.1	22651	23256	R	TA02735	complement(<22651..>23256)	Theileria annulata	3864973
TA02730	mRNA	TA02730	NC_011100.1	24527	29101	D	TA02730	join(<24527..28616,28716..>29101)	Theileria annulata	3864972
TA02725	mRNA	TA02725	NC_011100.1	29567	32503	R	TA02725	complement(join(<29567..31187,31227..>32503))	Theileria annulata	3864971
TA02720	mRNA	TA02720	NC_011100.1	34684	39261	D	TA02720	<34684..>39261	Theileria annulata	3864970
TA02715	mRNA	TA02715	NC_011100.1	40013	42766	R	TA02715	complement(<40013..>42766)	Theileria annulata	3864969
TA02710	mRNA	TA02710	NC_011100.1	43716	44426	R	TA02710	complement(<43716..>44426)	Theileria annulata	3864968
TA02705	mRNA	TA02705	NC_011100.1	45379	46116	R	TA02705	complement(<45379..>46116)	Theileria annulata	3864967
TA02700	mRNA	TA02700	NC_011100.1	46547	48347	R	TA02700	complement(join(<46547..46774,46821..46913,46944..47155,47186..47366,47399..47498,47561..47755,47791..47855,47886..48031,48107..>48347))	Theileria annulata	3864966
TA02695	mRNA	TA02695	NC_011100.1	48428	48922	D	TA02695	<48428..>48922	Theileria annulata	3864965
TA02690	mRNA	TA02690	NC_011100.1	49015	51456	R	TA02690	complement(join(<49015..49111,49167..49310,49364..49470,49526..49649,49693..50222,50350..50800,50867..51273,51340..>51456))	Theileria annulata	3864964
TA02685	mRNA	TA02685	NC_011100.1	51685	53147	R	TA02685	complement(join(<51685..51790,51863..52086,52162..52600,52679..52755,52937..52996,53028..>53147))	Theileria annulata	3864963
TA02680	mRNA	TA02680	NC_011100.1	53488	55015	R	TA02680	complement(join(<53488..53797,53834..53952,54019..54123,54170..54334,54455..>55015))	Theileria annulata	3865137
TA02675	mRNA	TA02675	NC_011100.1	55085	57166	D	TA02675	join(<55085..55145,55240..55332,55549..55736,55794..55880,55922..56094,56141..56451,56485..56633,56721..56861,56893..56934,57005..>57166)	Theileria annulata	3865136
TA02670	mRNA	TA02670	NC_011100.1	57250	58284	R	TA02670	complement(<57250..>58284)	Theileria annulata	3865135
TA02665	mRNA	TA02665	NC_011100.1	58611	59688	D	TA02665	join(<58611..58649,58683..58787,58822..58933,59003..59207,59246..59401,59433..>59688)	Theileria annulata	3865134
TA02660	mRNA	TA02660	NC_011100.1	59818	62337	R	TA02660	complement(join(<59818..59871,59902..59967,60017..60053,60109..60177,60212..60279,60372..60444,60476..60512,60581..60672,60722..60771,60861..60917,60948..60979,61021..61176,61250..61298,61366..62124,62176..>62337))	Theileria annulata	3865133
TA02655	mRNA	TA02655	NC_011100.1	62756	63745	D	TA02655	<62756..>63745	Theileria annulata	3865132
TA02650	mRNA	TA02650	NC_011100.1	63806	65114	R	TA02650	complement(join(<63806..63973,64032..64133,64168..64313,64349..64474,64559..64619,64652..64803,64835..>65114))	Theileria annulata	3865131
TA02645	mRNA	TA02645	NC_011100.1	65381	66008	R	TA02645	complement(join(<65381..65524,65567..65689,65742..65888,66000..>66008))	Theileria annulata	3865130
TA02640	mRNA	TA02640	NC_011100.1	66161	67030	R	TA02640	complement(join(<66161..66637,66729..66809,66848..>67030))	Theileria annulata	3865129
TA02635	mRNA	TA02635	NC_011100.1	67580	68085	D	TA02635	join(<67580..67653,67721..67810,67875..>68085)	Theileria annulata	3865128
TA02630	mRNA	TA02630	NC_011100.1	68495	71968	D	TA02630	join(<68495..70187,70350..70409,70441..70935,71015..71056,71088..71296,71329..71772,71873..>71968)	Theileria annulata	3865127
TA02625	mRNA	TA02625	NC_011100.1	72104	73351	R	TA02625	complement(<72104..>73351)	Theileria annulata	3865126
TA02620	mRNA	TA02620	NC_011100.1	74708	75481	D	TA02620	<74708..>75481	Theileria annulata	3865125
TA02615	mRNA	TA02615	NC_011100.1	75756	76658	D	TA02615	<75756..>76658	Theileria annulata	3865124
TA02610	mRNA	TA02610	NC_011100.1	76742	78552	R	TA02610	complement(join(<76742..76923,76993..77210,77297..77397,77428..77514,77596..77801,77855..77983,78049..78177,78279..>78552))	Theileria annulata	3865123
TA02605	mRNA	TA02605	NC_011100.1	78780	80280	R	TA02605	complement(join(<78780..79153,79210..79260,79290..79350,79423..79584,79615..79786,79816..79895,79962..80172,80210..>80280))	Theileria annulata	3865122
TA02600	mRNA	TA02600	NC_011100.1	80484	81706	D	TA02600	join(<80484..80571,80631..80882,80954..81348,81401..>81706)	Theileria annulata	3865121
TA02595	mRNA	TA02595	NC_011100.1	81874	82544	R	TA02595	complement(join(<81874..81979,82010..82172,82223..82355,82428..82493,82524..>82544))	Theileria annulata	3865120
TA02590	mRNA	TA02590	NC_011100.1	82763	83845	R	TA02590	complement(<82763..>83845)	Theileria annulata	3865119
TA02585	mRNA	TA02585	NC_011100.1	84218	84754	R	TA02585	complement(<84218..>84754)	Theileria annulata	3865118
TA02580	mRNA	TA02580	NC_011100.1	84821	85885	R	TA02580	complement(<84821..>85885)	Theileria annulata	3865097
TA02575	mRNA	TA02575	NC_011100.1	86798	88488	D	TA02575	join(<86798..86911,86942..87013,87044..87231,87327..87522,87617..88101,88197..>88488)	Theileria annulata	3865096
TA02570	mRNA	TA02570	NC_011100.1	88623	89386	R	TA02570	complement(join(<88623..88998,89094..89241,89275..>89386))	Theileria annulata	3865095
TA02565	mRNA	TA02565	NC_011100.1	89617	90573	R	TA02565	complement(<89617..>90573)	Theileria annulata	3865094
TA02560	mRNA	TA02560	NC_011100.1	90931	92666	D	TA02560	join(<90931..90949,91088..92304,92406..>92666)	Theileria annulata	3865093
TA02555	mRNA	TA02555	NC_011100.1	92812	93818	D	TA02555	join(<92812..93096,93181..93513,93600..>93818)	Theileria annulata	3865092
TA02550	mRNA	TA02550	NC_011100.1	93868	95179	R	TA02550	complement(join(<93868..94274,94349..94961,95036..>95179))	Theileria annulata	3865091
TA02545	mRNA	TA02545	NC_011100.1	96264	102463	D	TA02545	join(<96264..96303,96529..96773,96887..97862,97937..98254,98342..98602,98655..98828,98891..98985,99049..99625,99654..100379,100493..100771,100859..101108,101174..101711,101840..>102463)	Theileria annulata	3865090
TA02540	mRNA	TA02540	NC_011100.1	102898	103923	D	TA02540	<102898..>103923	Theileria annulata	3865089
TA02535	mRNA	TA02535	NC_011100.1	104360	105038	D	TA02535	join(<104360..104539,104650..104802,104904..>105038)	Theileria annulata	3865088
TA02530	mRNA	TA02530	NC_011100.1	105224	105843	R	TA02530	complement(join(<105224..105726,105780..>105843))	Theileria annulata	3865087
TA02525	mRNA	TA02525	NC_011100.1	106275	106652	R	TA02525	complement(join(<106275..106356,106486..>106652))	Theileria annulata	3865086
TA02520	mRNA	TA02520	NC_011100.1	108128	109809	R	TA02520	complement(join(<108128..108579,108696..>109809))	Theileria annulata	3865085
TA02515	mRNA	TA02515	NC_011100.1	109935	111811	R	TA02515	complement(join(<109935..110274,110328..111100,111174..111275,111347..>111811))	Theileria annulata	3865084
TA02510	mRNA	TA02510	NC_011100.1	112231	114545	R	TA02510	complement(join(<112231..112766,112830..112915,112949..113001,113079..113235,113270..113309,113384..113508,113927..113979,114015..>114545))	Theileria annulata	3865083
TA02505	mRNA	TA02505	NC_011100.1	115036	116355	D	TA02505	<115036..>116355	Theileria annulata	3865082
TA02500	mRNA	TA02500	NC_011100.1	116746	117808	D	TA02500	join(<116746..116890,117044..117111,117150..117236,117340..117420,117488..117547,117722..>117808)	Theileria annulata	3865081
TA02495	mRNA	TA02495	NC_011100.1	118251	121631	D	TA02495	<118251..>121631	Theileria annulata	3865080
TA02490	mRNA	TA02490	NC_011100.1	122818	125941	D	TA02490	join(<122818..123275,123309..123776,123842..124717,124748..124855,124903..124982,125065..125633,125666..>125941)	Theileria annulata	3865079
TA02485	mRNA	TA02485	NC_011100.1	126075	127496	R	TA02485	complement(<126075..>127496)	Theileria annulata	3864752
TA02480	mRNA	TA02480	NC_011100.1	128013	129434	R	TA02480	complement(<128013..>129434)	Theileria annulata	3864751
TA03170	mRNA	TA03170	NC_011100.1	133188	134585	D	TA03170	<133188..>134585	Theileria annulata	3864975
TA03175	mRNA	TA03175	NC_011100.1	134615	137033	R	TA03175	complement(join(<134615..134893,134923..134986,135015..135178,135217..135324,135355..135513,135555..135738,135768..136053,136086..136405,136436..136509,136544..136735,136779..>137033))	Theileria annulata	3864976
TA03180	mRNA	TA03180	NC_011100.1	137845	139725	D	TA03180	join(<137845..137998,138030..138199,138236..138385,138417..138908,138939..139102,139281..139342,139377..139418,139450..139505,139537..>139725)	Theileria annulata	3864977
TA03185	mRNA	TA03185	NC_011100.1	140064	140518	D	TA03185	join(<140064..140129,140222..>140518)	Theileria annulata	3864978
TA03190	mRNA	TA03190	NC_011100.1	141218	141984	D	TA03190	join(<141218..141269,141320..141400,141432..141628,141769..>141984)	Theileria annulata	3864979
TA03195	mRNA	TA03195	NC_011100.1	142212	143060	D	TA03195	<142212..>143060	Theileria annulata	3864980
TA03200	mRNA	TA03200	NC_011100.1	143322	145321	D	TA03200	join(<143322..143411,143442..143559,143611..144020,144080..144206,144280..144383,144430..144563,144612..144899,145022..145115,145145..>145321)	Theileria annulata	3864981
TA03205	mRNA	TA03205	NC_011100.1	145445	146053	R	TA03205	complement(<145445..>146053)	Theileria annulata	3865187
TA03210	mRNA	TA03210	NC_011100.1	146638	147216	D	TA03210	<146638..>147216	Theileria annulata	3865188
TA03265	mRNA	TA03265	NC_011100.1	147302	148257	R	TA03265	complement(join(<147302..147455,147489..148044,148140..>148257))	Theileria annulata	3865199
TA03270	mRNA	TA03270	NC_011100.1	148448	149167	D	TA03270	join(<148448..148537,148618..148734,148766..148810,148840..148903,148968..>149167)	Theileria annulata	3865200
TA03375	mRNA	TA03375	NC_011100.1	149308	151929	R	TA03375	complement(join(<149308..149858,150000..150147,150206..151099,151345..151643,151683..>151929))	Theileria annulata	3865338
TA03430	mRNA	TA03430	NC_011100.1	152136	155328	R	TA03430	complement(join(<152136..152488,152790..152984,153064..153225,153676..153778,153808..153941,154040..154139,154344..154509,154673..>155328))	Theileria annulata	3864620
TA03435	mRNA	TA03435	NC_011100.1	156278	159421	D	TA03435	join(<156278..156509,156680..156958,157269..159002,159372..>159421)	Theileria annulata	3864621
TA03540	mRNA	TA03540	NC_011100.1	159457	160047	R	TA03540	complement(<159457..>160047)	Theileria annulata	3865010
TA03595	mRNA	TA03595	NC_011100.1	160786	161310	R	TA03595	complement(<160786..>161310)	Theileria annulata	3864851
TA03650	mRNA	TA03650	NC_011100.1	163140	166386	R	TA03650	complement(join(<163140..163558,163590..>166386))	Theileria annulata	3864862
TA03705	mRNA	TA03705	NC_011100.1	166858	167709	R	TA03705	complement(<166858..>167709)	Theileria annulata	3864598
TA03710	mRNA	TA03710	NC_011100.1	168197	169321	D	TA03710	<168197..>169321	Theileria annulata	3864599
TA03765	mRNA	TA03765	NC_011100.1	170059	172548	D	TA03765	join(<170059..172150,172253..>172548)	Theileria annulata	3864610
TA03820	mRNA	TA03820	NC_011100.1	172779	174485	D	TA03820	join(<172779..173210,173901..>174485)	Theileria annulata	3864837
TA03875	mRNA	TA03875	NC_011100.1	176832	177899	D	TA03875	join(<176832..176888,177042..177128,177263..177369,177505..177592,177708..>177899)	Theileria annulata	3864848
TA03930	mRNA	TA03930	NC_011100.1	178947	179870	D	TA03930	<178947..>179870	Theileria annulata	3864781
TA03985	mRNA	TA03985	NC_011100.1	180883	182083	D	TA03985	join(<180883..181069,181206..>182083)	Theileria annulata	3865208
TA04090	mRNA	TA04090	NC_011100.1	182826	187112	R	TA04090	complement(join(<182826..183139,183297..183642,183825..184087,184281..184350,184368..184526,185563..185720,185807..185952,186221..186369,186400..186507,186843..186976,187016..>187112))	Theileria annulata	3865386
TA04145	mRNA	TA04145	NC_011100.1	187209	191292	R	TA04145	complement(join(<187209..187526,187724..188840,189251..>191292))	Theileria annulata	3865397
TA04150	mRNA	TA04150	NC_011100.1	192204	193041	D	TA04150	join(<192204..192314,192466..192694,192755..>193041)	Theileria annulata	3865398
TA04205	mRNA	TA04205	NC_011100.1	198323	201029	D	TA04205	join(<198323..198438,198545..198771,199182..199481,199676..200172,200667..>201029)	Theileria annulata	3865029
TA04310	mRNA	TA04310	NC_011100.1	201574	204294	R	TA04310	complement(join(<201574..201666,202098..202216,202518..202743,203029..203232,204172..>204294))	Theileria annulata	3864801
TA04315	mRNA	TA04315	NC_011100.1	205386	208364	D	TA04315	join(<205386..206405,206713..206986,207283..>208364)	Theileria annulata	3864802
TA04420	mRNA	TA04420	NC_011100.1	209351	209956	R	TA04420	complement(<209351..>209956)	Theileria annulata	3865239
TA04425	mRNA	TA04425	NC_011100.1	210165	211313	D	TA04425	join(<210165..210314,210400..210676,211165..>211313)	Theileria annulata	3865240
TA04480	mRNA	TA04480	NC_011100.1	211671	214340	D	TA04480	<211671..>214340	Theileria annulata	3865270
TA04585	mRNA	TA04585	NC_011100.1	215434	217485	R	TA04585	complement(<215434..>217485)	Theileria annulata	3864895
TA04640	mRNA	TA04640	NC_011100.1	218746	222084	R	TA04640	complement(<218746..>222084)	Theileria annulata	3864906
TA04645	mRNA	TA04645	NC_011100.1	222622	227578	D	TA04645	join(<222622..223030,223089..223297,223847..223984,224453..224583,224692..224758,224962..225108,225593..225674,225851..226035,226169..226249,227114..227210,227310..>227578)	Theileria annulata	3864907
TA04700	mRNA	TA04700	NC_011100.1	227703	231039	D	TA04700	join(<227703..228363,229135..230561,230926..>231039)	Theileria annulata	3865371
TA04805	mRNA	TA04805	NC_011100.1	231329	231881	R	TA04805	complement(join(<231329..231777,231806..>231881))	Theileria annulata	3865296
TA04860	mRNA	TA04860	NC_011100.1	233254	234741	R	TA04860	complement(join(<233254..233658,233767..234235,234266..234540,234574..>234741))	Theileria annulata	3864930
TA04915	mRNA	TA04915	NC_011100.1	234837	236783	R	TA04915	complement(<234837..>236783)	Theileria annulata	3864941
TA04970	mRNA	TA04970	NC_011100.1	236908	238338	R	TA04970	complement(<236908..>238338)	Theileria annulata	3864696
TA04975	mRNA	TA04975	NC_011100.1	238991	239264	D	TA04975	join(<238991..239025,239055..239169,239199..>239264)	Theileria annulata	3864697
TA05080	mRNA	TA05080	NC_011100.1	239338	240032	R	TA05080	complement(join(<239338..239469,239503..239583,239614..239776,239808..239918,239968..>240032))	Theileria annulata	3864738
TA05135	mRNA	TA05135	NC_011100.1	240287	242416	R	TA05135	complement(join(<240287..242097,242240..242363,242393..>242416))	Theileria annulata	3864749
TA05140	mRNA	TA05140	NC_011100.1	242435	243308	D	TA05140	join(<242435..242848,242881..242925,243021..>243308)	Theileria annulata	3864750
TA05195	mRNA	TA05195	NC_011100.1	243336	245777	D	TA05195	<243336..>245777	Theileria annulata	3864565
TA05260	mRNA	TA05260	NC_011100.1	245823	246224	R	TA05260	complement(<245823..>246224)	Theileria annulata	3864873
TA05265	mRNA	TA05265	NC_011100.1	246455	248591	R	TA05265	complement(join(<246455..246812,246949..>248591))	Theileria annulata	3864874
TA05270	mRNA	TA05270	NC_011100.1	248678	250166	D	TA05270	join(<248678..249685,249739..249858,249891..>250166)	Theileria annulata	3864875
TA05275	mRNA	TA05275	NC_011100.1	250587	254032	R	TA05275	complement(join(<250587..251313,251347..251599,251630..252425,252473..252540,252571..252877,252942..253140,253191..253477,253512..253654,253689..253764,253823..>254032))	Theileria annulata	3864876
TA05280	mRNA	TA05280	NC_011100.1	254269	254833	R	TA05280	complement(join(<254269..254508,254540..>254833))	Theileria annulata	3864877
TA05285	mRNA	TA05285	NC_011100.1	255470	256471	D	TA05285	<255470..>256471	Theileria annulata	3864878
TA05290	mRNA	TA05290	NC_011100.1	256918	257421	D	TA05290	<256918..>257421	Theileria annulata	3864879
TA05295	mRNA	TA05295	NC_011100.1	257401	261650	R	TA05295	complement(join(<257401..258098,258252..258767,258821..258965,259049..259176,259233..259417,259657..259893,259999..260114,260187..>261650))	Theileria annulata	3864880
TA05300	mRNA	TA05300	NC_011100.1	261876	263079	R	TA05300	complement(join(<261876..261991,262023..262401,262509..262823,262951..>263079))	Theileria annulata	3864881
TA05305	mRNA	TA05305	NC_011100.1	264036	264457	R	TA05305	complement(join(<264036..264162,264202..264338,264371..>264457))	Theileria annulata	3864882
TA05310	mRNA	TA05310	NC_011100.1	264567	265998	D	TA05310	join(<264567..264669,264758..264912,264945..265058,265107..265267,265299..>265998)	Theileria annulata	3864883
TA05315	mRNA	TA05315	NC_011100.1	267811	268383	D	TA05315	<267811..>268383	Theileria annulata	3864884
TA05320	mRNA	TA05320	NC_011100.1	268939	269502	D	TA05320	<268939..>269502	Theileria annulata	3864885
TA05325	mRNA	TA05325	NC_011100.1	269766	272529	D	TA05325	join(<269766..270015,270063..270414,270477..>272529)	Theileria annulata	3864886
TA05330	mRNA	TA05330	NC_011100.1	272891	274999	D	TA05330	join(<272891..273002,273102..273226,273321..273519,273569..273645,273677..274106,274139..274182,274216..274536,274623..274767,274875..>274999)	Theileria annulata	3864887
TA05335	mRNA	TA05335	NC_011100.1	275119	277065	D	TA05335	<275119..>277065	Theileria annulata	3864888
TA05340	mRNA	TA05340	NC_011100.1	277661	278800	D	TA05340	join(<277661..277819,277905..278142,278345..278640,278705..>278800)	Theileria annulata	3865098
TA05345	mRNA	TA05345	NC_011100.1	279091	280342	R	TA05345	complement(join(<279091..279207,279239..279463,279513..279817,279922..279952,280035..280142,280172..>280342))	Theileria annulata	3865099
TA05350	mRNA	TA05350	NC_011100.1	280467	282734	D	TA05350	join(<280467..280617,280702..>282734)	Theileria annulata	3865100
TA05355	mRNA	TA05355	NC_011100.1	282906	288230	D	TA05355	join(<282906..283329,283411..>288230)	Theileria annulata	3865101
TA05360	mRNA	TA05360	NC_011100.1	288555	289346	D	TA05360	join(<288555..288667,288700..288772,288802..288876,288908..288997,289029..289113,289144..>289346)	Theileria annulata	3865102
TA05365	mRNA	TA05365	NC_011100.1	289824	292906	D	TA05365	join(<289824..291014,291079..291348,291406..291473,291535..292615,292697..292785,292816..>292906)	Theileria annulata	3865103
TA05370	mRNA	TA05370	NC_011100.1	293270	294763	D	TA05370	<293270..>294763	Theileria annulata	3865104
TA05375	mRNA	TA05375	NC_011100.1	295072	298944	D	TA05375	<295072..>298944	Theileria annulata	3865105
TA05380	mRNA	TA05380	NC_011100.1	299442	301118	D	TA05380	<299442..>301118	Theileria annulata	3865106
TA05385	mRNA	TA05385	NC_011100.1	301675	302138	D	TA05385	join(<301675..301866,301920..>302138)	Theileria annulata	3865107
TA05390	mRNA	TA05390	NC_011100.1	302764	303315	D	TA05390	<302764..>303315	Theileria annulata	3865108
TA05395	mRNA	TA05395	NC_011100.1	304129	304539	D	TA05395	<304129..>304539	Theileria annulata	3865109
TA05400	mRNA	TA05400	NC_011100.1	305050	307350	D	TA05400	<305050..>307350	Theileria annulata	3865110
TA05405	mRNA	TA05405	NC_011100.1	307610	308177	D	TA05405	join(<307610..307936,307965..>308177)	Theileria annulata	3865111
TA05410	mRNA	TA05410	NC_011100.1	308318	309158	R	TA05410	complement(join(<308318..308415,308475..308640,308705..308942,308991..309045,309101..>309158))	Theileria annulata	3865112
TA05415	mRNA	TA05415	NC_011100.1	309465	311581	D	TA05415	join(<309465..309869,310157..310210,310479..310539,310580..310900,310953..311060,311358..>311581)	Theileria annulata	3865113
TA05420	mRNA	TA05420	NC_011100.1	311828	313255	R	TA05420	complement(join(<311828..312037,312067..312208,312274..312393,312429..312457,312515..>313255))	Theileria annulata	3865114
TA05425	mRNA	TA05425	NC_011100.1	313474	314850	R	TA05425	complement(<313474..>314850)	Theileria annulata	3865115
TA05430	mRNA	TA05430	NC_011100.1	314902	316436	R	TA05430	complement(join(<314902..316031,316097..>316436))	Theileria annulata	3865116
TA05435	mRNA	TA05435	NC_011100.1	317598	318995	D	TA05435	join(<317598..318833,318912..>318995)	Theileria annulata	3865117
TA05440	mRNA	TA05440	NC_011100.1	319270	320646	R	TA05440	complement(join(<319270..319410,319458..319817,319857..320374,320532..>320646))	Theileria annulata	3864673
TA05445	mRNA	TA05445	NC_011100.1	321175	321711	D	TA05445	<321175..>321711	Theileria annulata	3864674
TA05450	mRNA	TA05450	NC_011100.1	321822	323853	R	TA05450	complement(join(<321822..322361,322393..>323853))	Theileria annulata	3864675
TA05455	mRNA	TA05455	NC_011100.1	324983	330525	D	TA05455	join(<324983..325565,325632..327062,327158..328174,328245..328570,328654..328757,328831..329299,329366..329681,329782..330430,330462..>330525)	Theileria annulata	3864676
TA05460	mRNA	TA05460	NC_011100.1	330660	331287	D	TA05460	join(<330660..330815,330846..330975,331086..331184,331244..>331287)	Theileria annulata	3864677
TA05465	mRNA	TA05465	NC_011100.1	331440	339745	D	TA05465	join(<331440..331803,332156..334270,334343..336265,336363..>339745)	Theileria annulata	3864678
TA05470	mRNA	TA05470	NC_011100.1	340098	340817	D	TA05470	<340098..>340817	Theileria annulata	3864679
TA05475	mRNA	TA05475	NC_011100.1	341010	348225	D	TA05475	join(<341010..341508,341577..342344,342389..342509,342567..>348225)	Theileria annulata	3864680
TA05480	mRNA	TA05480	NC_011100.1	348547	350976	R	TA05480	complement(join(<348547..348831,348864..348971,349003..349092,349137..349249,349293..349358,349400..349754,349834..350000,350081..350466,350524..350662,350694..>350976))	Theileria annulata	3864681
TA05485	mRNA	TA05485	NC_011100.1	351374	355003	D	TA05485	join(<351374..351555,351593..351809,351858..352071,352136..352288,352434..352512,352572..352825,352857..354019,354066..354203,354265..354569,354644..354833,354875..>355003)	Theileria annulata	3864682
TA05490	mRNA	TA05490	NC_011100.1	355193	356338	R	TA05490	complement(join(<355193..355278,355345..355478,355510..355553,355688..355699,355818..355956,356002..356124,356193..>356338))	Theileria annulata	3864683
TA05495	mRNA	TA05495	NC_011100.1	356935	357930	D	TA05495	join(<356935..357619,357692..>357930)	Theileria annulata	3864684
TA05500	mRNA	TA05500	NC_011100.1	358299	358970	D	TA05500	join(<358299..358308,358480..>358970)	Theileria annulata	3864685
TA05505	mRNA	TA05505	NC_011100.1	359299	360461	R	TA05505	complement(join(<359299..359471,359506..359740,359786..359912,360250..>360461))	Theileria annulata	3864686
TA05510	mRNA	TA05510	NC_011100.1	360493	361958	R	TA05510	complement(join(<360493..360681,360741..361008,361102..361387,361453..361578,361679..>361958))	Theileria annulata	3864687
TA05515	mRNA	TA05515	NC_011100.1	362165	364312	R	TA05515	complement(<362165..>364312)	Theileria annulata	3864688
TA05520	mRNA	TA05520	NC_011100.1	365013	366064	R	TA05520	complement(join(<365013..365620,365702..365813,365882..>366064))	Theileria annulata	3864689
TA03215	mRNA	TA03215	NC_011100.1	366301	368630	R	TA03215	complement(join(<366301..368444,368471..>368630))	Theileria annulata	3865189
TA03220	mRNA	TA03220	NC_011100.1	368895	370564	R	TA03220	complement(join(<368895..369007,369043..>370564))	Theileria annulata	3865190
TA03225	mRNA	TA03225	NC_011100.1	370781	372904	R	TA03225	complement(join(<370781..370984,371041..371184,371221..371417,371480..371614,371665..371840,371919..372337,372386..372508,372579..372769,372847..>372904))	Theileria annulata	3865191
TA03230	mRNA	TA03230	NC_011100.1	373695	375248	R	TA03230	complement(join(<373695..373840,373874..373942,373972..374242,374306..374631,374672..>375248))	Theileria annulata	3865192
TA03235	mRNA	TA03235	NC_011100.1	375650	380686	R	TA03235	complement(<375650..>380686)	Theileria annulata	3865193
TA03240	mRNA	TA03240	NC_011100.1	380893	381737	R	TA03240	complement(join(<380893..380975,381052..381210,381273..381489,381660..>381737))	Theileria annulata	3865194
TA03245	mRNA	TA03245	NC_011100.1	382781	383301	R	TA03245	complement(join(<382781..382917,382991..383047,383079..>383301))	Theileria annulata	3865195
TA03250	mRNA	TA03250	NC_011100.1	383444	384841	R	TA03250	complement(<383444..>384841)	Theileria annulata	3865196
TA03255	mRNA	TA03255	NC_011100.1	385322	385693	D	TA03255	<385322..>385693	Theileria annulata	3865197
TA03260	mRNA	TA03260	NC_011100.1	386113	386674	D	TA03260	join(<386113..386176,386308..386339,386399..386452,386493..386532,386598..>386674)	Theileria annulata	3865198
TA03275	mRNA	TA03275	NC_011100.1	386893	387606	D	TA03275	<386893..>387606	Theileria annulata	3865201
TA03280	mRNA	TA03280	NC_011100.1	387859	390011	R	TA03280	complement(join(<387859..388143,388345..388407,388502..388846,388941..>390011))	Theileria annulata	3865202
TA03285	mRNA	TA03285	NC_011100.1	390074	391072	R	TA03285	complement(<390074..>391072)	Theileria annulata	3865203
TA03290	mRNA	TA03290	NC_011100.1	391205	392170	R	TA03290	complement(<391205..>392170)	Theileria annulata	3865204
TA03295	mRNA	TA03295	NC_011100.1	393129	395768	D	TA03295	join(<393129..393838,393994..394042,394092..>395768)	Theileria annulata	3865205
TA03300	mRNA	TA03300	NC_011100.1	395860	397872	R	TA03300	complement(<395860..>397872)	Theileria annulata	3865206
TA03305	mRNA	TA03305	NC_011100.1	398143	400326	R	TA03305	complement(<398143..>400326)	Theileria annulata	3865324
TA03310	mRNA	TA03310	NC_011100.1	401320	403720	D	TA03310	join(<401320..401596,401769..401866,401925..401972,402179..402548,402648..403212,403315..>403720)	Theileria annulata	3865325
TA03315	mRNA	TA03315	NC_011100.1	404037	406541	R	TA03315	complement(join(<404037..404204,404331..>406541))	Theileria annulata	3865326
TA03320	mRNA	TA03320	NC_011100.1	406839	408453	R	TA03320	complement(join(<406839..407482,407553..408089,408174..>408453))	Theileria annulata	3865327
TA03325	mRNA	TA03325	NC_011100.1	408615	409052	R	TA03325	complement(<408615..>409052)	Theileria annulata	3865328
TA03330	mRNA	TA03330	NC_011100.1	409796	414458	R	TA03330	complement(join(<409796..410300,410407..410528,410561..410644,410766..411025,411168..411560,411700..411805,412044..412250,412337..412540,412686..412886,413021..413236,413380..413873,413917..414073,414183..>414458))	Theileria annulata	3865329
TA03335	mRNA	TA03335	NC_011100.1	414638	418062	R	TA03335	complement(join(<414638..414874,415026..415123,415306..416629,416728..416815,416915..417160,417211..417313,417462..>418062))	Theileria annulata	3865330
TA03340	mRNA	TA03340	NC_011100.1	418247	419917	D	TA03340	join(<418247..418471,418556..418692,418725..418926,419047..419328,419462..419632,419662..419715,419777..>419917)	Theileria annulata	3865331
TA03345	mRNA	TA03345	NC_011100.1	419991	421939	R	TA03345	complement(join(<419991..420372,420459..420509,420587..420840,420913..421102,421192..421365,421485..>421939))	Theileria annulata	3865332
TA03350	mRNA	TA03350	NC_011100.1	422406	424973	D	TA03350	join(<422406..423306,423441..423640,423739..423953,424050..424402,424723..>424973)	Theileria annulata	3865333
TA03355	mRNA	TA03355	NC_011100.1	425106	426539	R	TA03355	complement(<425106..>426539)	Theileria annulata	3865334
TA03360	mRNA	TA03360	NC_011100.1	426764	427730	R	TA03360	complement(join(<426764..427197,427262..>427730))	Theileria annulata	3865335
TA03365	mRNA	TA03365	NC_011100.1	427864	429092	D	TA03365	join(<427864..428279,428313..428766,428820..>429092)	Theileria annulata	3865336
TA03370	mRNA	TA03370	NC_011100.1	429210	431832	R	TA03370	complement(join(<429210..429427,429624..430103,430241..430354,430453..430582,430704..431040,431170..431311,431400..431579,431703..>431832))	Theileria annulata	3865337
TA03380	mRNA	TA03380	NC_011100.1	432976	437005	D	TA03380	join(<432976..433312,433422..434450,434552..434812,434908..435639,435808..436335,436450..436754,436871..>437005)	Theileria annulata	3865339
TA03385	mRNA	TA03385	NC_011100.1	437496	446786	D	TA03385	<437496..>446786	Theileria annulata	3865340
TA03390	mRNA	TA03390	NC_011100.1	447466	448564	R	TA03390	complement(join(<447466..447651,447698..447909,448135..>448564))	Theileria annulata	3865341
TA03395	mRNA	TA03395	NC_011100.1	449307	451243	D	TA03395	join(<449307..449472,449581..449868,449955..450360,450406..450947,451062..>451243)	Theileria annulata	3865342
TA03400	mRNA	TA03400	NC_011100.1	451362	453285	D	TA03400	join(<451362..451658,451797..451848,451922..451996,452042..452157,452231..452432,452538..452600,452646..452842,452983..>453285)	Theileria annulata	3864614
TA03405	mRNA	TA03405	NC_011100.1	453489	455583	R	TA03405	complement(join(<453489..453917,453989..454117,454171..454278,454403..454562,454618..454944,455038..455199,455284..455422,455502..>455583))	Theileria annulata	3864615
TA03410	mRNA	TA03410	NC_011100.1	455836	457587	R	TA03410	complement(join(<455836..456145,456206..456321,456352..>457587))	Theileria annulata	3864616
TA03415	mRNA	TA03415	NC_011100.1	457827	458698	D	TA03415	join(<457827..457872,457960..458091,458179..458459,458594..>458698)	Theileria annulata	3864617
TA03420	mRNA	TA03420	NC_011100.1	458892	460296	D	TA03420	join(<458892..458924,459008..459133,459331..459443,459575..460182,460232..>460296)	Theileria annulata	3864618
TA03425	mRNA	TA03425	NC_011100.1	460654	461346	D	TA03425	join(<460654..460762,460843..460985,461026..461091,461146..>461346)	Theileria annulata	3864619
TA03440	mRNA	TA03440	NC_011100.1	461354	462225	R	TA03440	complement(join(<461354..461505,461767..462009,462180..>462225))	Theileria annulata	3864622
TA03445	mRNA	TA03445	NC_011100.1	462589	464277	R	TA03445	complement(join(<462589..463253,463370..463487,463601..464041,464146..>464277))	Theileria annulata	3864623
TA03450	mRNA	TA03450	NC_011100.1	464880	465334	D	TA03450	join(<464880..465054,465150..>465334)	Theileria annulata	3864624
TA03455	mRNA	TA03455	NC_011100.1	465503	467346	R	TA03455	complement(join(<465503..466926,466992..>467346))	Theileria annulata	3864625
TA03460	mRNA	TA03460	NC_011100.1	468037	469585	D	TA03460	join(<468037..468186,468239..>469585)	Theileria annulata	3864626
TA03465	mRNA	TA03465	NC_011100.1	469656	471254	R	TA03465	complement(<469656..>471254)	Theileria annulata	3864627
TA03470	mRNA	TA03470	NC_011100.1	471432	473386	R	TA03470	complement(join(<471432..471570,471603..471670,471724..471879,471961..472038,472108..472719,472781..472908,472974..473034,473066..473197,473288..>473386))	Theileria annulata	3864628
TA03475	mRNA	TA03475	NC_011100.1	473716	474459	R	TA03475	complement(<473716..>474459)	Theileria annulata	3864629
TA03480	mRNA	TA03480	NC_011100.1	474688	478163	R	TA03480	complement(join(<474688..474814,474881..475197,475266..476746,476851..477807,477953..>478163))	Theileria annulata	3864630
TA03485	mRNA	TA03485	NC_011100.1	479138	482351	D	TA03485	join(<479138..479299,479337..479396,479483..479614,479684..479772,479852..480032,480082..480170,480201..480301,480368..480576,480586..480604,480625..480770,480869..481070,481114..481700,481746..481892,481933..482093,482153..>482351)	Theileria annulata	3864631
TA03490	mRNA	TA03490	NC_011100.1	482399	482827	R	TA03490	complement(<482399..>482827)	Theileria annulata	3864632
TA03495	mRNA	TA03495	NC_011100.1	482959	488148	R	TA03495	complement(<482959..>488148)	Theileria annulata	3864633
TA03500	mRNA	TA03500	NC_011100.1	488388	489317	R	TA03500	complement(join(<488388..488506,488552..>489317))	Theileria annulata	3865001
TA03505	mRNA	TA03505	NC_011100.1	489417	491059	D	TA03505	join(<489417..489493,489552..489973,490005..490201,490285..490477,490513..490634,490664..>491059)	Theileria annulata	3865002
TA03510	mRNA	TA03510	NC_011100.1	491891	493273	D	TA03510	join(<491891..491992,492022..492089,492162..492318,492350..>493273)	Theileria annulata	3865003
TA03515	mRNA	TA03515	NC_011100.1	493342	495902	R	TA03515	complement(join(<493342..493421,493475..494582,494817..494927,495052..495289,495383..495550,495607..>495902))	Theileria annulata	3865004
TA03520	mRNA	TA03520	NC_011100.1	496040	499969	R	TA03520	complement(<496040..>499969)	Theileria annulata	3865005
TA03521	mRNA	TA03521	NC_011100.1	500770	513651	R	TA03521	complement(<500770..>513651)	Theileria annulata	3865006
TA03525	mRNA	TA03525	NC_011100.1	514691	518132	R	TA03525	complement(join(<514691..517385,517420..517535,517567..517637,517679..>518132))	Theileria annulata	3865007
TA03530	mRNA	TA03530	NC_011100.1	518224	520128	D	TA03530	<518224..>520128	Theileria annulata	3865008
TA03535	mRNA	TA03535	NC_011100.1	520238	521083	R	TA03535	complement(<520238..>521083)	Theileria annulata	3865009
TA03545	mRNA	TA03545	NC_011100.1	521248	523368	R	TA03545	complement(<521248..>523368)	Theileria annulata	3865011
TA03550	mRNA	TA03550	NC_011100.1	523728	525256	R	TA03550	complement(join(<523728..525073,525142..>525256))	Theileria annulata	3865012
TA03555	mRNA	TA03555	NC_011100.1	525552	526841	D	TA03555	join(<525552..525588,525667..525705,525862..>526841)	Theileria annulata	3865013
TA03560	mRNA	TA03560	NC_011100.1	526927	528749	R	TA03560	complement(join(<526927..527274,527305..527589,527618..527742,527779..527832,527873..527950,528010..528356,528421..528554,528585..>528749))	Theileria annulata	3865014
TA03565	mRNA	TA03565	NC_011100.1	529085	531268	D	TA03565	<529085..>531268	Theileria annulata	3865015
TA03570	mRNA	TA03570	NC_011100.1	531443	533974	R	TA03570	complement(join(<531443..532389,532463..532538,532784..>533974))	Theileria annulata	3865016
TA03575	mRNA	TA03575	NC_011100.1	534913	535985	D	TA03575	join(<534913..535111,535165..>535985)	Theileria annulata	3865017
TA03580	mRNA	TA03580	NC_011100.1	536166	537485	R	TA03580	complement(join(<536166..536192,536223..536312,536345..536390,536421..536508,536565..536715,536782..537003,537059..537150,537215..>537485))	Theileria annulata	3865018
TA03585	mRNA	TA03585	NC_011100.1	537693	539198	R	TA03585	complement(join(<537693..538031,538176..>539198))	Theileria annulata	3865019
TA03590	mRNA	TA03590	NC_011100.1	539411	541451	R	TA03590	complement(join(<539411..539553,539636..539929,540021..540162,540189..>541451))	Theileria annulata	3864850
TA03600	mRNA	TA03600	NC_011100.1	542043	544581	D	TA03600	join(<542043..543103,543318..>544581)	Theileria annulata	3864852
TA03605	mRNA	TA03605	NC_011100.1	545499	546331	R	TA03605	complement(join(<545499..545687,545775..545882,545913..545981,546011..546107,546183..>546331))	Theileria annulata	3864853
TA03610	mRNA	TA03610	NC_011100.1	546799	548198	D	TA03610	join(<546799..546870,546904..547019,547064..547298,547327..547387,547537..547665,547742..547832,547862..>548198)	Theileria annulata	3864854
TA03615	mRNA	TA03615	NC_011100.1	548618	550957	D	TA03615	<548618..>550957	Theileria annulata	3864855
TA03620	mRNA	TA03620	NC_011100.1	551151	552618	R	TA03620	complement(join(<551151..551276,551342..551877,551959..552381,552528..>552618))	Theileria annulata	3864856
TA03625	mRNA	TA03625	NC_011100.1	552789	553953	R	TA03625	complement(join(<552789..553019,553058..553234,553328..553423,553543..553646,553714..553819,553891..>553953))	Theileria annulata	3864857
TA03630	mRNA	TA03630	NC_011100.1	554842	556521	D	TA03630	<554842..>556521	Theileria annulata	3864858
TA03635	mRNA	TA03635	NC_011100.1	556606	557303	R	TA03635	complement(join(<556606..556775,556814..556905,556984..>557303))	Theileria annulata	3864859
TA03640	mRNA	TA03640	NC_011100.1	557464	560904	R	TA03640	complement(<557464..>560904)	Theileria annulata	3864860
TA03645	mRNA	TA03645	NC_011100.1	561062	562452	R	TA03645	complement(join(<561062..561225,561254..561318,561440..561577,561609..561697,561765..562148,562193..562323,562419..>562452))	Theileria annulata	3864861
TA03655	mRNA	TA03655	NC_011100.1	562575	564349	D	TA03655	join(<562575..562661,562702..563066,563100..564027,564059..>564349)	Theileria annulata	3864863
TA03660	mRNA	TA03660	NC_011100.1	564419	564794	D	TA03660	join(<564419..564493,564534..>564794)	Theileria annulata	3864864
TA03665	mRNA	TA03665	NC_011100.1	565013	565840	R	TA03665	complement(<565013..>565840)	Theileria annulata	3864865
TA03670	mRNA	TA03670	NC_011100.1	565929	566519	D	TA03670	<565929..>566519	Theileria annulata	3864866
TA03675	mRNA	TA03675	NC_011100.1	566721	567748	R	TA03675	complement(join(<566721..566999,567032..567061,567097..567270,567303..567398,567455..567556,567587..>567748))	Theileria annulata	3864867
TA03680	mRNA	TA03680	NC_011100.1	567794	568436	R	TA03680	complement(join(<567794..567954,567989..>568436))	Theileria annulata	3864868
TA03685	mRNA	TA03685	NC_011100.1	568725	569809	D	TA03685	join(<568725..568896,568932..569101,569134..569313,569385..569588,569636..>569809)	Theileria annulata	3864869
TA03690	mRNA	TA03690	NC_011100.1	570237	571521	R	TA03690	complement(join(<570237..570592,570653..570971,571022..571260,571296..571348,571421..>571521))	Theileria annulata	3864595
TA03695	mRNA	TA03695	NC_011100.1	571877	572832	R	TA03695	complement(join(<571877..572038,572068..572224,572254..572335,572392..572560,572590..>572832))	Theileria annulata	3864596
TA03700	mRNA	TA03700	NC_011100.1	573070	573694	R	TA03700	complement(join(<573070..573353,573389..573469,573508..>573694))	Theileria annulata	3864597
TA03715	mRNA	TA03715	NC_011100.1	574323	576295	D	TA03715	join(<574323..574739,574771..575289,575321..575762,575793..>576295)	Theileria annulata	3864600
TA03720	mRNA	TA03720	NC_011100.1	576922	578324	D	TA03720	join(<576922..577411,577474..>578324)	Theileria annulata	3864601
TA03725	mRNA	TA03725	NC_011100.1	578681	580086	D	TA03725	join(<578681..579170,579233..>580086)	Theileria annulata	3864602
TA03730	mRNA	TA03730	NC_011100.1	581004	582500	D	TA03730	<581004..>582500	Theileria annulata	3864603
TA03735	mRNA	TA03735	NC_011100.1	582685	584111	D	TA03735	join(<582685..583165,583207..>584111)	Theileria annulata	3864604
TA03740	mRNA	TA03740	NC_011100.1	584825	586150	D	TA03740	<584825..>586150	Theileria annulata	3864605
TA03745	mRNA	TA03745	NC_011100.1	586517	587877	D	TA03745	join(<586517..586991,587024..>587877)	Theileria annulata	3864606
TA03750	mRNA	TA03750	NC_011100.1	588241	589589	D	TA03750	join(<588241..588715,588748..>589589)	Theileria annulata	3864607
TA03755	mRNA	TA03755	NC_011100.1	591333	594086	D	TA03755	<591333..>594086	Theileria annulata	3864608
TA03760	mRNA	TA03760	NC_011100.1	594181	596136	D	TA03760	<594181..>596136	Theileria annulata	3864609
TA03770	mRNA	TA03770	NC_011100.1	596200	597142	R	TA03770	complement(join(<596200..596855,596887..>597142))	Theileria annulata	3864611
TA03775	mRNA	TA03775	NC_011100.1	597289	599202	R	TA03775	complement(join(<597289..597582,597613..598017,598070..598461,598491..598776,598807..>599202))	Theileria annulata	3864612
TA03780	mRNA	TA03780	NC_011100.1	600878	610300	R	TA03780	complement(join(<600878..601413,601623..603053,603444..604294,604571..607892,607972..609972,610081..>610300))	Theileria annulata	3864613
TA03785	mRNA	TA03785	NC_011100.1	610615	611525	R	TA03785	complement(join(<610615..610925,611066..>611525))	Theileria annulata	3864830
TA03790	mRNA	TA03790	NC_011100.1	611679	612876	R	TA03790	complement(join(<611679..611778,611861..612062,612354..612563,612678..>612876))	Theileria annulata	3864831
TA03795	mRNA	TA03795	NC_011100.1	613053	614940	D	TA03795	join(<613053..613187,613351..>614940)	Theileria annulata	3864832
TA03800	mRNA	TA03800	NC_011100.1	615343	618012	D	TA03800	<615343..>618012	Theileria annulata	3864833
TA03805	mRNA	TA03805	NC_011100.1	618449	622031	R	TA03805	complement(join(<618449..620226,620276..620335,620648..620770,620806..621525,621564..621602,621959..>622031))	Theileria annulata	3864834
TA03810	mRNA	TA03810	NC_011100.1	623704	624339	R	TA03810	complement(<623704..>624339)	Theileria annulata	3864835
TA03815	mRNA	TA03815	NC_011100.1	626505	627242	D	TA03815	<626505..>627242	Theileria annulata	3864836
TA03825	mRNA	TA03825	NC_011100.1	627893	628840	D	TA03825	<627893..>628840	Theileria annulata	3864838
TA03830	mRNA	TA03830	NC_011100.1	628962	629786	D	TA03830	join(<628962..629059,629093..629183,629261..629334,629480..>629786)	Theileria annulata	3864839
TA03835	mRNA	TA03835	NC_011100.1	630121	631713	D	TA03835	<630121..>631713	Theileria annulata	3864840
TA03840	mRNA	TA03840	NC_011100.1	631827	634205	D	TA03840	<631827..>634205	Theileria annulata	3864841
TA03845	mRNA	TA03845	NC_011100.1	634649	636694	R	TA03845	complement(join(<634649..634993,635083..635904,635943..636272,636326..>636694))	Theileria annulata	3864842
TA03850	mRNA	TA03850	NC_011100.1	636952	639802	R	TA03850	complement(join(<636952..639330,639662..>639802))	Theileria annulata	3864843
TA03855	mRNA	TA03855	NC_011100.1	639900	640940	R	TA03855	complement(<639900..>640940)	Theileria annulata	3864844
TA03860	mRNA	TA03860	NC_011100.1	641297	642974	R	TA03860	complement(join(<641297..641530,641562..641603,641943..642344,642701..642817,642885..>642974))	Theileria annulata	3864845
TA03865	mRNA	TA03865	NC_011100.1	645102	646576	D	TA03865	join(<645102..645162,645243..>646576)	Theileria annulata	3864846
TA03870	mRNA	TA03870	NC_011100.1	647147	647746	R	TA03870	complement(<647147..>647746)	Theileria annulata	3864847
TA03880	mRNA	TA03880	NC_011100.1	649351	649797	R	TA03880	complement(join(<649351..649450,649481..649575,649606..>649797))	Theileria annulata	3864849
TA03885	mRNA	TA03885	NC_011100.1	649917	651084	R	TA03885	complement(join(<649917..650580,650843..>651084))	Theileria annulata	3864772
TA03890	mRNA	TA03890	NC_011100.1	652254	663629	D	TA03890	join(<652254..654546,655580..656265,656495..656565,656983..657064,657097..657200,657744..657815,658159..658363,658395..658505,658873..658988,659309..659453,659833..659893,659937..660010,660277..660370,660951..661034,661201..661372,661885..661990,662204..662363,662450..662574,662652..>663629)	Theileria annulata	3864773
TA03895	mRNA	TA03895	NC_011100.1	664899	665912	D	TA03895	<664899..>665912	Theileria annulata	3864774
TA03900	mRNA	TA03900	NC_011100.1	666726	668248	R	TA03900	complement(join(<666726..667042,667426..668102,668136..>668248))	Theileria annulata	3864775
TA03905	mRNA	TA03905	NC_011100.1	668494	669090	R	TA03905	complement(<668494..>669090)	Theileria annulata	3864776
TA03910	mRNA	TA03910	NC_011100.1	671140	677563	D	TA03910	join(<671140..671842,671956..672107,672365..672500,672602..672668,673089..673606,674012..674114,674387..674400,674488..674575,674716..674821,675294..675699,676192..676334,676367..676443,677206..677248,677330..>677563)	Theileria annulata	3864777
TA03915	mRNA	TA03915	NC_011100.1	677717	678040	R	TA03915	complement(<677717..>678040)	Theileria annulata	3864778
TA03920	mRNA	TA03920	NC_011100.1	678855	679729	R	TA03920	complement(join(<678855..678965,678998..679054,679163..679373,679492..679556,679652..>679729))	Theileria annulata	3864779
TA03925	mRNA	TA03925	NC_011100.1	679788	685881	R	TA03925	complement(join(<679788..679982,680089..680227,680789..680952,681075..681174,681414..681496,682459..682672,683122..683236,683277..683398,683961..684452,685074..685565,685598..>685881))	Theileria annulata	3864780
TA03935	mRNA	TA03935	NC_011100.1	686912	688111	D	TA03935	join(<686912..687047,687154..687230,687262..687342,687564..687655,687747..687805,687836..687918,687950..>688111)	Theileria annulata	3864782
TA03940	mRNA	TA03940	NC_011100.1	688154	690187	D	TA03940	<688154..>690187	Theileria annulata	3864783
TA03945	mRNA	TA03945	NC_011100.1	692575	694351	D	TA03945	join(<692575..693338,693489..693670,693909..>694351)	Theileria annulata	3864784
TA03950	mRNA	TA03950	NC_011100.1	694551	695378	D	TA03950	<694551..>695378	Theileria annulata	3864785
TA03955	mRNA	TA03955	NC_011100.1	695589	696644	D	TA03955	join(<695589..696486,696562..>696644)	Theileria annulata	3864786
TA03960	mRNA	TA03960	NC_011100.1	697042	698442	D	TA03960	join(<697042..697161,697249..>698442)	Theileria annulata	3864787
TA03965	mRNA	TA03965	NC_011100.1	698631	699872	D	TA03965	<698631..>699872	Theileria annulata	3864788
TA03970	mRNA	TA03970	NC_011100.1	699903	701147	D	TA03970	<699903..>701147	Theileria annulata	3864789
TA03975	mRNA	TA03975	NC_011100.1	701255	702076	R	TA03975	complement(join(<701255..701514,701542..>702076))	Theileria annulata	3864790
TA03980	mRNA	TA03980	NC_011100.1	702093	702751	R	TA03980	complement(join(<702093..702358,702390..702479,702511..702646,702737..>702751))	Theileria annulata	3865207
TA03990	mRNA	TA03990	NC_011100.1	702850	703372	D	TA03990	join(<702850..703073,703102..>703372)	Theileria annulata	3865209
TA03995	mRNA	TA03995	NC_011100.1	703611	707347	R	TA03995	complement(join(<703611..704162,704201..704248,704280..704336,704372..>707347))	Theileria annulata	3865210
TA04000	mRNA	TA04000	NC_011100.1	708380	710239	D	TA04000	<708380..>710239	Theileria annulata	3865211
TA04005	mRNA	TA04005	NC_011100.1	710627	712303	D	TA04005	<710627..>712303	Theileria annulata	3865212
TA04010	mRNA	TA04010	NC_011100.1	712718	714412	D	TA04010	<712718..>714412	Theileria annulata	3865213
TA04015	mRNA	TA04015	NC_011100.1	714790	716424	D	TA04015	<714790..>716424	Theileria annulata	3865214
TA04016	mRNA	TA04016	NC_011100.1	716781	718415	D	TA04016	<716781..>718415	Theileria annulata	3865215
TA04017	mRNA	TA04017	NC_011100.1	718772	720427	D	TA04017	<718772..>720427	Theileria annulata	3865216
TA04018	mRNA	TA04018	NC_011100.1	720805	722439	D	TA04018	<720805..>722439	Theileria annulata	3865217
TA04020	mRNA	TA04020	NC_011100.1	722796	723683	D	TA04020	join(<722796..723163,723359..>723683)	Theileria annulata	3865218
TA04025	mRNA	TA04025	NC_011100.1	724132	725475	D	TA04025	<724132..>725475	Theileria annulata	3865219
TA04030	mRNA	TA04030	NC_011100.1	725694	726724	D	TA04030	join(<725694..726082,726153..726441,726473..>726724)	Theileria annulata	3865220
TA04035	mRNA	TA04035	NC_011100.1	726827	728361	D	TA04035	join(<726827..727204,727235..727297,727329..727706,727737..727817,727847..727888,727918..728109,728140..>728361)	Theileria annulata	3865221
TA04040	mRNA	TA04040	NC_011100.1	728462	729132	D	TA04040	join(<728462..728517,728549..728664,728735..728823,728854..728974,729004..729054,729086..>729132)	Theileria annulata	3865222
TA04045	mRNA	TA04045	NC_011100.1	729455	731380	D	TA04045	join(<729455..729590,729622..730103,730142..730244,730274..730365,730421..730782,730813..730900,730932..731163,731193..>731380)	Theileria annulata	3865223
TA04050	mRNA	TA04050	NC_011100.1	731384	732967	R	TA04050	complement(<731384..>732967)	Theileria annulata	3865224
TA04055	mRNA	TA04055	NC_011100.1	733877	735297	D	TA04055	join(<733877..734356,734389..734618,734649..>735297)	Theileria annulata	3865225
TA04060	mRNA	TA04060	NC_011100.1	735621	737039	D	TA04060	join(<735621..736097,736131..736360,736391..>737039)	Theileria annulata	3865226
TA04065	mRNA	TA04065	NC_011100.1	737770	739003	D	TA04065	join(<737770..737823,737858..738726,738756..738839,738871..>739003)	Theileria annulata	3865381
TA04070	mRNA	TA04070	NC_011100.1	739193	739831	R	TA04070	complement(join(<739193..739325,739356..739477,739524..739718,739754..>739831))	Theileria annulata	3865382
TA04075	mRNA	TA04075	NC_011100.1	739965	740406	D	TA04075	join(<739965..740168,740212..>740406)	Theileria annulata	3865383
TA04080	mRNA	TA04080	NC_011100.1	740422	741884	D	TA04080	join(<740422..740734,740768..740836,740874..740945,740981..741091,741121..741424,741454..741585,741625..741751,741783..>741884)	Theileria annulata	3865384
TA04085	mRNA	TA04085	NC_011100.1	742014	745361	R	TA04085	complement(<742014..>745361)	Theileria annulata	3865385
TA04095	mRNA	TA04095	NC_011100.1	746827	748603	D	TA04095	join(<746827..747077,747108..747186,747218..747300,747331..747481,747513..747656,747713..747862,747908..748069,748370..>748603)	Theileria annulata	3865387
TA04100	mRNA	TA04100	NC_011100.1	748630	749010	D	TA04100	<748630..>749010	Theileria annulata	3865388
TA04105	mRNA	TA04105	NC_011100.1	749151	750915	R	TA04105	complement(join(<749151..749347,749376..750281,750312..750416,750481..750630,750660..750781,750812..>750915))	Theileria annulata	3865389
TA04110	mRNA	TA04110	NC_011100.1	751401	752157	R	TA04110	complement(join(<751401..751745,751776..751862,751892..751976,752006..>752157))	Theileria annulata	3865390
TA04115	mRNA	TA04115	NC_011100.1	752673	753026	R	TA04115	complement(join(<752673..752882,752913..>753026))	Theileria annulata	3865391
TA04120	mRNA	TA04120	NC_011100.1	753339	754499	R	TA04120	complement(join(<753339..753490,753537..753638,753677..753928,753959..>754499))	Theileria annulata	3865392
TA04125	mRNA	TA04125	NC_011100.1	755017	759066	D	TA04125	<755017..>759066	Theileria annulata	3865393
TA04130	mRNA	TA04130	NC_011100.1	759209	760338	R	TA04130	complement(join(<759209..759816,759851..760113,760208..>760338))	Theileria annulata	3865394
TA04135	mRNA	TA04135	NC_011100.1	760641	761625	D	TA04135	join(<760641..760748,760779..760920,760994..761059,761122..761190,761411..>761625)	Theileria annulata	3865395
TA04140	mRNA	TA04140	NC_011100.1	761946	762483	R	TA04140	complement(join(<761946..762200,762286..>762483))	Theileria annulata	3865396
TA04155	mRNA	TA04155	NC_011100.1	762785	763417	D	TA04155	<762785..>763417	Theileria annulata	3865399
TA04160	mRNA	TA04160	NC_011100.1	763497	764829	R	TA04160	complement(join(<763497..763844,763972..764117,764199..>764829))	Theileria annulata	3865020
TA04165	mRNA	TA04165	NC_011100.1	765431	770524	D	TA04165	<765431..>770524	Theileria annulata	3865021
TA04170	mRNA	TA04170	NC_011100.1	770583	773777	R	TA04170	complement(join(<770583..770702,770772..772876,772961..>773777))	Theileria annulata	3865022
TA04175	mRNA	TA04175	NC_011100.1	774650	774898	D	TA04175	<774650..>774898	Theileria annulata	3865023
TA04180	mRNA	TA04180	NC_011100.1	775276	775808	D	TA04180	join(<775276..775296,775390..775500,775656..>775808)	Theileria annulata	3865024
TA04185	mRNA	TA04185	NC_011100.1	775873	776560	R	TA04185	complement(join(<775873..776112,776219..>776560))	Theileria annulata	3865025
TA04190	mRNA	TA04190	NC_011100.1	777477	778967	D	TA04190	join(<777477..778509,778645..>778967)	Theileria annulata	3865026
TA04195	mRNA	TA04195	NC_011100.1	779512	780875	R	TA04195	complement(join(<779512..779651,779731..779925,780118..780252,780295..780471,780557..>780875))	Theileria annulata	3865027
TA04200	mRNA	TA04200	NC_011100.1	781268	786261	D	TA04200	join(<781268..781343,781401..781489,781516..781569,781634..785307,785425..785612,785669..>786261)	Theileria annulata	3865028
TA04210	mRNA	TA04210	NC_011100.1	786356	787951	R	TA04210	complement(<786356..>787951)	Theileria annulata	3865030
TA04215	mRNA	TA04215	NC_011100.1	788037	792525	R	TA04215	complement(join(<788037..788092,788124..788187,788220..788526,788612..>792525))	Theileria annulata	3865031
TA04220	mRNA	TA04220	NC_011100.1	793084	793446	D	TA04220	<793084..>793446	Theileria annulata	3865032
TA04225	mRNA	TA04225	NC_011100.1	793578	796334	R	TA04225	complement(<793578..>796334)	Theileria annulata	3865033
TA04230	mRNA	TA04230	NC_011100.1	796581	801582	D	TA04230	join(<796581..796610,796717..796935,796967..797046,797076..797259,797286..797398,797430..797508,797571..797891,797920..798022,798052..798416,798498..798968,798999..799334,799366..799448,799481..799611,799641..799702,799733..799785,799818..799992,800027..800070,800213..801374,801406..>801582)	Theileria annulata	3865034
TA04235	mRNA	TA04235	NC_011100.1	801801	803156	R	TA04235	complement(<801801..>803156)	Theileria annulata	3865035
TA04240	mRNA	TA04240	NC_011100.1	803354	805534	R	TA04240	complement(<803354..>805534)	Theileria annulata	3865036
TA04245	mRNA	TA04245	NC_011100.1	805705	806938	R	TA04245	complement(join(<805705..805792,805826..805977,806026..806484,806538..806623,806660..806702,806849..>806938))	Theileria annulata	3865037
TA04250	mRNA	TA04250	NC_011100.1	807295	810149	D	TA04250	join(<807295..807429,807476..807576,807610..809700,809792..>810149)	Theileria annulata	3865038
TA04255	mRNA	TA04255	NC_011100.1	810266	811111	R	TA04255	complement(<810266..>811111)	Theileria annulata	3865039
TA04260	mRNA	TA04260	NC_011100.1	811369	811987	R	TA04260	complement(join(<811369..811857,811892..>811987))	Theileria annulata	3864791
TA04265	mRNA	TA04265	NC_011100.1	812054	814577	R	TA04265	complement(join(<812054..812191,812260..812647,812731..>814577))	Theileria annulata	3864792
TA04270	mRNA	TA04270	NC_011100.1	814899	815358	R	TA04270	complement(join(<814899..815036,815133..815222,815311..>815358))	Theileria annulata	3864793
TA04275	mRNA	TA04275	NC_011100.1	815548	817345	R	TA04275	complement(join(<815548..815721,815805..815931,815984..816069,816099..816235,816287..816403,816440..816541,816573..816808,816879..817050,817084..>817345))	Theileria annulata	3864794
TA04280	mRNA	TA04280	NC_011100.1	817861	818733	D	TA04280	join(<817861..818215,818278..818348,818394..818480,818550..818620,818652..>818733)	Theileria annulata	3864795
TA04285	mRNA	TA04285	NC_011100.1	818896	819840	D	TA04285	<818896..>819840	Theileria annulata	3864796
TA04290	mRNA	TA04290	NC_011100.1	819911	820599	R	TA04290	complement(join(<819911..820190,820224..820531,820561..>820599))	Theileria annulata	3864797
TA04295	mRNA	TA04295	NC_011100.1	820883	821932	D	TA04295	<820883..>821932	Theileria annulata	3864798
TA04300	mRNA	TA04300	NC_011100.1	822352	823886	D	TA04300	join(<822352..822696,822750..823448,823551..>823886)	Theileria annulata	3864799
TA04305	mRNA	TA04305	NC_011100.1	823961	828265	R	TA04305	complement(join(<823961..824643,824719..826617,826696..>828265))	Theileria annulata	3864800
TA04320	mRNA	TA04320	NC_011100.1	828536	831874	D	TA04320	join(<828536..829510,829580..830252,830286..830423,830471..830851,830961..831647,831723..>831874)	Theileria annulata	3864803
TA04325	mRNA	TA04325	NC_011100.1	832062	836624	R	TA04325	complement(join(<832062..833033,833065..833155,833223..833344,833455..834871,834958..>836624))	Theileria annulata	3864804
TA04330	mRNA	TA04330	NC_011100.1	836899	837795	D	TA04330	join(<836899..836938,836980..837064,837159..837339,837421..>837795)	Theileria annulata	3864805
TA04335	mRNA	TA04335	NC_011100.1	838246	840555	D	TA04335	<838246..>840555	Theileria annulata	3864806
TA04340	mRNA	TA04340	NC_011100.1	840705	841767	D	TA04340	join(<840705..840725,840802..841148,841231..841303,841332..841455,841490..841650,841690..>841767)	Theileria annulata	3864807
TA04345	mRNA	TA04345	NC_011100.1	842113	842994	R	TA04345	complement(join(<842113..842151,842254..>842994))	Theileria annulata	3864808
TA04350	mRNA	TA04350	NC_011100.1	843238	844955	R	TA04350	complement(join(<843238..844891,844930..>844955))	Theileria annulata	3864809
TA04355	mRNA	TA04355	NC_011100.1	845076	848108	R	TA04355	complement(<845076..>848108)	Theileria annulata	3865227
TA04365	mRNA	TA04365	NC_011100.1	850560	853947	D	TA04365	join(<850560..852395,852476..853431,853521..>853947)	Theileria annulata	3865228
TA04370	mRNA	TA04370	NC_011100.1	854637	856535	D	TA04370	join(<854637..854826,854907..855133,855229..855390,855425..855598,855701..856289,856376..856424,856472..>856535)	Theileria annulata	3865229
TA04375	mRNA	TA04375	NC_011100.1	856692	857513	D	TA04375	<856692..>857513	Theileria annulata	3865230
TA04380	mRNA	TA04380	NC_011100.1	857662	859075	R	TA04380	complement(join(<857662..857888,857962..>859075))	Theileria annulata	3865231
TA04385	mRNA	TA04385	NC_011100.1	859245	861870	D	TA04385	join(<859245..859737,859850..860420,860549..861111,861233..861486,861601..>861870)	Theileria annulata	3865232
TA04390	mRNA	TA04390	NC_011100.1	861911	863315	D	TA04390	join(<861911..862058,862100..862602,862640..862742,862777..>863315)	Theileria annulata	3865233
TA04395	mRNA	TA04395	NC_011100.1	863412	865258	R	TA04395	complement(join(<863412..863648,863788..863908,863994..864419,864567..>865258))	Theileria annulata	3865234
TA04400	mRNA	TA04400	NC_011100.1	865707	866446	D	TA04400	join(<865707..865884,866023..866269,866371..>866446)	Theileria annulata	3865235
TA04405	mRNA	TA04405	NC_011100.1	866494	867925	R	TA04405	complement(join(<866494..866646,866756..866843,866927..867149,867410..867482,867564..867634,867733..867835,867875..>867925))	Theileria annulata	3865236
TA04410	mRNA	TA04410	NC_011100.1	868009	869565	R	TA04410	complement(<868009..>869565)	Theileria annulata	3865237
TA04415	mRNA	TA04415	NC_011100.1	869814	870718	D	TA04415	join(<869814..869844,869961..870123,870236..870396,870522..>870718)	Theileria annulata	3865238
TA04430	mRNA	TA04430	NC_011100.1	870909	873686	R	TA04430	complement(<870909..>873686)	Theileria annulata	3865241
TA04435	mRNA	TA04435	NC_011100.1	874040	875677	D	TA04435	join(<874040..874113,874231..874378,874487..874739,874915..875178,875304..>875677)	Theileria annulata	3865242
TA04440	mRNA	TA04440	NC_011100.1	875971	876381	D	TA04440	join(<875971..876022,876092..>876381)	Theileria annulata	3865243
TA04445	mRNA	TA04445	NC_011100.1	876448	877421	R	TA04445	complement(join(<876448..876647,876675..876957,877086..>877421))	Theileria annulata	3865244
TA04450	mRNA	TA04450	NC_011100.1	877893	879796	D	TA04450	join(<877893..878089,878187..878385,878489..879224,879312..>879796)	Theileria annulata	3865245
TA04455	mRNA	TA04455	NC_011100.1	880123	880948	D	TA04455	join(<880123..880257,880321..880463,880576..880692,880726..>880948)	Theileria annulata	3865246
TA04460	mRNA	TA04460	NC_011100.1	881419	882488	D	TA04460	join(<881419..881825,881882..>882488)	Theileria annulata	3865266
TA04465	mRNA	TA04465	NC_011100.1	882649	884223	D	TA04465	<882649..>884223	Theileria annulata	3865267
TA04470	mRNA	TA04470	NC_011100.1	884293	885693	R	TA04470	complement(<884293..>885693)	Theileria annulata	3865268
TA04475	mRNA	TA04475	NC_011100.1	886642	887453	R	TA04475	complement(join(<886642..886801,886843..886935,886967..887013,887181..887275,887351..>887453))	Theileria annulata	3865269
TA04485	mRNA	TA04485	NC_011100.1	887606	889888	D	TA04485	join(<887606..887762,887851..887940,887976..888144,888181..888334,888386..888520,888547..888604,888636..888693,888777..888960,889001..889053,889109..889164,889196..889235,889323..889416,889483..889573,889645..889740,889791..>889888)	Theileria annulata	3865271
TA04490	mRNA	TA04490	NC_011100.1	890126	898298	D	TA04490	join(<890126..890220,890258..>898298)	Theileria annulata	3865272
TA04495	mRNA	TA04495	NC_011100.1	899333	900622	R	TA04495	complement(join(<899333..899585,899729..900332,900387..900434,900466..>900622))	Theileria annulata	3865273
TA04500	mRNA	TA04500	NC_011100.1	901081	902826	D	TA04500	join(<901081..901177,901274..901485,901557..901683,901721..901823,901929..902015,902047..902132,902255..>902826)	Theileria annulata	3865274
TA04505	mRNA	TA04505	NC_011100.1	902991	903194	R	TA04505	complement(<902991..>903194)	Theileria annulata	3865275
TA04510	mRNA	TA04510	NC_011100.1	903563	904335	R	TA04510	complement(join(<903563..903735,903801..903955,904027..904134,904202..>904335))	Theileria annulata	3865276
TA04515	mRNA	TA04515	NC_011100.1	904467	905792	R	TA04515	complement(join(<904467..905020,905060..905237,905284..905570,905639..>905792))	Theileria annulata	3865277
TA04520	mRNA	TA04520	NC_011100.1	905936	907320	D	TA04520	join(<905936..905948,906044..906319,906377..906458,906522..906721,906860..906946,907005..907081,907138..>907320)	Theileria annulata	3865278
TA04525	mRNA	TA04525	NC_011100.1	907534	908893	D	TA04525	join(<907534..907668,907792..907898,907931..908054,908167..908301,908334..908435,908495..908560,908591..908662,908735..>908893)	Theileria annulata	3865279
TA04530	mRNA	TA04530	NC_011100.1	909283	911218	R	TA04530	complement(join(<909283..910068,910127..910223,910330..910985,911057..>911218))	Theileria annulata	3865280
TA04535	mRNA	TA04535	NC_011100.1	911379	912378	D	TA04535	join(<911379..911903,911990..912087,912149..912189,912224..>912378)	Theileria annulata	3865281
TA04540	mRNA	TA04540	NC_011100.1	912499	915437	R	TA04540	complement(join(<912499..912651,912681..912724,912986..913182,913251..913392,913459..913519,913550..913747,913835..913896,913947..914179,914209..914762,914827..914901,914932..915068,915109..915289,915354..>915437))	Theileria annulata	3865282
TA04545	mRNA	TA04545	NC_011100.1	915609	916214	R	TA04545	complement(join(<915609..915733,915781..915811,915869..915976,916071..>916214))	Theileria annulata	3865283
TA04550	mRNA	TA04550	NC_011100.1	917997	920169	D	TA04550	join(<917997..918891,918959..>920169)	Theileria annulata	3865284
TA04555	mRNA	TA04555	NC_011100.1	920631	922732	D	TA04555	join(<920631..921009,921043..922290,922349..922548,922580..>922732)	Theileria annulata	3864889
TA04560	mRNA	TA04560	NC_011100.1	922910	923125	D	TA04560	<922910..>923125	Theileria annulata	3864890
TA04565	mRNA	TA04565	NC_011100.1	923424	924743	D	TA04565	<923424..>924743	Theileria annulata	3864891
TA04570	mRNA	TA04570	NC_011100.1	925069	925805	D	TA04570	join(<925069..925216,925258..>925805)	Theileria annulata	3864892
TA04575	mRNA	TA04575	NC_011100.1	925900	927769	R	TA04575	complement(join(<925900..925965,925997..926076,926108..926252,926319..926745,926783..927273,927376..927494,927619..>927769))	Theileria annulata	3864893
TA04580	mRNA	TA04580	NC_011100.1	927953	928648	R	TA04580	complement(join(<927953..928298,928333..928415,928466..>928648))	Theileria annulata	3864894
TA04590	mRNA	TA04590	NC_011100.1	928980	930115	D	TA04590	join(<928980..929142,929313..929468,929508..929788,929822..929878,929948..>930115)	Theileria annulata	3864896
TA04595	mRNA	TA04595	NC_011100.1	930232	931177	R	TA04595	complement(join(<930232..930292,930322..930523,930599..930946,931099..>931177))	Theileria annulata	3864897
TA04600	mRNA	TA04600	NC_011100.1	931319	932564	R	TA04600	complement(join(<931319..931438,931518..931574,931619..931699,931804..932166,932198..932338,932369..932436,932516..>932564))	Theileria annulata	3864898
TA04605	mRNA	TA04605	NC_011100.1	933326	934162	D	TA04605	join(<933326..933349,933392..933495,933699..933768,933851..933998,934065..>934162)	Theileria annulata	3864899
TA04610	mRNA	TA04610	NC_011100.1	934219	934668	R	TA04610	complement(join(<934219..934402,934436..>934668))	Theileria annulata	3864900
TA04615	mRNA	TA04615	NC_011100.1	935228	938703	D	TA04615	join(<935228..935553,935618..936717,936788..936979,937076..>938703)	Theileria annulata	3864901
TA04620	mRNA	TA04620	NC_011100.1	939054	942218	R	TA04620	complement(join(<939054..941644,941814..941909,941976..942041,942088..942153,942188..>942218))	Theileria annulata	3864902
TA04625	mRNA	TA04625	NC_011100.1	942601	943777	R	TA04625	complement(join(<942601..942936,942970..943140,943317..943396,943433..943548,943593..943701,943747..>943777))	Theileria annulata	3864903
TA04630	mRNA	TA04630	NC_011100.1	943873	945652	R	TA04630	complement(join(<943873..944398,944542..944740,944768..944867,944900..945108,945139..>945652))	Theileria annulata	3864904
TA04635	mRNA	TA04635	NC_011100.1	946050	947437	R	TA04635	complement(join(<946050..946246,946278..946378,946408..946546,946576..946672,946702..946980,947011..947045,947078..947179,947212..>947437))	Theileria annulata	3864905
TA04650	mRNA	TA04650	NC_011100.1	947737	948764	D	TA04650	join(<947737..948194,948247..948296,948379..>948764)	Theileria annulata	3864908
TA04655	mRNA	TA04655	NC_011100.1	949516	951138	D	TA04655	join(<949516..949983,950045..950121,950174..950341,950378..950452,950544..>951138)	Theileria annulata	3865362
TA04660	mRNA	TA04660	NC_011100.1	951280	952251	R	TA04660	complement(<951280..>952251)	Theileria annulata	3865363
TA04665	mRNA	TA04665	NC_011100.1	952715	955781	R	TA04665	complement(join(<952715..955191,955235..>955781))	Theileria annulata	3865364
TA04670	mRNA	TA04670	NC_011100.1	956974	958545	R	TA04670	complement(<956974..>958545)	Theileria annulata	3865365
TA09460	mRNA	TA09460	NC_011100.1	959194	960765	R	TA09460	complement(<959194..>960765)	Theileria annulata	3864665
TA09465	mRNA	TA09465	NC_011100.1	961701	963269	R	TA09465	complement(<961701..>963269)	Theileria annulata	3864666
TA09470	mRNA	TA09470	NC_011100.1	963920	965491	R	TA09470	complement(<963920..>965491)	Theileria annulata	3864667
TA09475	mRNA	TA09475	NC_011100.1	966427	967995	R	TA09475	complement(<966427..>967995)	Theileria annulata	3864668
TA09480	mRNA	TA09480	NC_011100.1	968933	970504	R	TA09480	complement(<968933..>970504)	Theileria annulata	3864669
TA09485	mRNA	TA09485	NC_011100.1	971441	973000	R	TA09485	complement(<971441..>973000)	Theileria annulata	3864670
TA09490	mRNA	TA09490	NC_011100.1	973939	975504	R	TA09490	complement(<973939..>975504)	Theileria annulata	3864671
TA09495	mRNA	TA09495	NC_011100.1	976189	978279	D	TA09495	join(<976189..976448,976478..976771,976803..977723,977804..977915,977944..978086,978162..>978279)	Theileria annulata	3864672
TA09500	mRNA	TA09500	NC_011100.1	978446	980023	R	TA09500	complement(<978446..>980023)	Theileria annulata	3865305
TA04675	mRNA	TA04675	NC_011100.1	980905	982481	R	TA04675	complement(join(<980905..981784,981817..>982481))	Theileria annulata	3865366
TA04680	mRNA	TA04680	NC_011100.1	983319	984890	R	TA04680	complement(<983319..>984890)	Theileria annulata	3865367
TA04685	mRNA	TA04685	NC_011100.1	985825	987399	R	TA04685	complement(<985825..>987399)	Theileria annulata	3865368
TA04690	mRNA	TA04690	NC_011100.1	988334	989905	R	TA04690	complement(<988334..>989905)	Theileria annulata	3865369
TA04695	mRNA	TA04695	NC_011100.1	990842	992407	R	TA04695	complement(join(<990842..991724,991758..>992407))	Theileria annulata	3865370
TA04705	mRNA	TA04705	NC_011100.1	993937	995528	R	TA04705	complement(join(<993937..994807,994876..>995528))	Theileria annulata	3865372
TA04710	mRNA	TA04710	NC_011100.1	996373	997169	D	TA04710	join(<996373..996663,996708..996839,996883..996940,996970..>997169)	Theileria annulata	3865373
TA04715	mRNA	TA04715	NC_011100.1	997247	999896	R	TA04715	complement(join(<997247..998496,998576..999811,999842..>999896))	Theileria annulata	3865374
TA04720	mRNA	TA04720	NC_011100.1	999959	1005658	R	TA04720	complement(join(<999959..1000977,1001050..>1005658))	Theileria annulata	3865375
TA04725	mRNA	TA04725	NC_011100.1	1006024	1009728	R	TA04725	complement(join(<1006024..1009128,1009195..1009413,1009495..>1009728))	Theileria annulata	3865376
TA04730	mRNA	TA04730	NC_011100.1	1009979	1011294	D	TA04730	join(<1009979..1010222,1010305..1010528,1010558..1010641,1010670..1010769,1011004..1011056,1011086..1011205,1011235..>1011294)	Theileria annulata	3865377
TA04735	mRNA	TA04735	NC_011100.1	1011385	1011669	R	TA04735	complement(<1011385..>1011669)	Theileria annulata	3865378
TA04740	mRNA	TA04740	NC_011100.1	1012545	1015514	D	TA04740	join(<1012545..1012845,1012980..1013167,1013329..1013508,1013699..1014147,1014310..1014476,1014558..1014648,1014743..1014962,1015065..>1015514)	Theileria annulata	3865379
TA04745	mRNA	TA04745	NC_011100.1	1015689	1016070	R	TA04745	complement(join(<1015689..1015878,1015919..>1016070))	Theileria annulata	3865380
TA04750	mRNA	TA04750	NC_011100.1	1016779	1018890	R	TA04750	complement(<1016779..>1018890)	Theileria annulata	3865285
TA04755	mRNA	TA04755	NC_011100.1	1019165	1020873	R	TA04755	complement(join(<1019165..1019819,1019933..>1020873))	Theileria annulata	3865286
TA04760	mRNA	TA04760	NC_011100.1	1020991	1022034	D	TA04760	join(<1020991..1021006,1021073..1021183,1021299..1021380,1021413..1021596,1021689..1021779,1021874..>1022034)	Theileria annulata	3865287
TA04765	mRNA	TA04765	NC_011100.1	1022963	1025516	R	TA04765	complement(join(<1022963..1023131,1023215..1025315,1025393..>1025516))	Theileria annulata	3865288
TA04770	mRNA	TA04770	NC_011100.1	1026425	1032381	D	TA04770	join(<1026425..1026477,1026784..1026961,1027195..1027951,1028318..1029391,1029678..1031945,1032191..>1032381)	Theileria annulata	3865289
TA04775	mRNA	TA04775	NC_011100.1	1032697	1041253	R	TA04775	complement(join(<1032697..1033748,1033962..1035392,1035847..1036710,1037237..1038706,1039098..1039522,1039890..1040556,1040890..1041148,1041215..>1041253))	Theileria annulata	3865290
TA04780	mRNA	TA04780	NC_011100.1	1041522	1043924	D	TA04780	join(<1041522..1041627,1041692..1041863,1042153..1042243,1042378..1042560,1042741..1042917,1043621..1043701,1043775..>1043924)	Theileria annulata	3865291
TA04785	mRNA	TA04785	NC_011100.1	1044065	1044622	D	TA04785	<1044065..>1044622	Theileria annulata	3865292
TA04790	mRNA	TA04790	NC_011100.1	1044659	1048376	D	TA04790	join(<1044659..1045798,1045834..1046245,1046314..>1048376)	Theileria annulata	3865293
TA04795	mRNA	TA04795	NC_011100.1	1048467	1049440	D	TA04795	join(<1048467..1048737,1048812..>1049440)	Theileria annulata	3865294
TA04800	mRNA	TA04800	NC_011100.1	1049710	1050121	D	TA04800	join(<1049710..1049973,1050008..>1050121)	Theileria annulata	3865295
TA04810	mRNA	TA04810	NC_011100.1	1050423	1052229	R	TA04810	complement(join(<1050423..1050719,1050827..1050964,1051086..1051192,1051521..1051694,1051812..>1052229))	Theileria annulata	3865297
TA04815	mRNA	TA04815	NC_011100.1	1052813	1061159	D	TA04815	join(<1052813..1052907,1053292..1053499,1053746..1053873,1054266..1054410,1054689..1054825,1055257..1055798,1056322..1059064,1059863..>1061159)	Theileria annulata	3865298
TA04820	mRNA	TA04820	NC_011100.1	1061595	1063668	R	TA04820	complement(join(<1061595..1062129,1062173..>1063668))	Theileria annulata	3865299
TA04825	mRNA	TA04825	NC_011100.1	1063755	1067598	R	TA04825	complement(join(<1063755..1064684,1064759..1065835,1065959..1066353,1066557..1066858,1066913..>1067598))	Theileria annulata	3865300
TA04830	mRNA	TA04830	NC_011100.1	1067609	1069071	R	TA04830	complement(join(<1067609..1068005,1068292..1068309,1068481..1068530,1068578..1068872,1068989..>1069071))	Theileria annulata	3865301
TA04835	mRNA	TA04835	NC_011100.1	1069377	1070555	R	TA04835	complement(join(<1069377..1069532,1069587..1069714,1069807..1069902,1070080..1070347,1070436..>1070555))	Theileria annulata	3865302
TA04840	mRNA	TA04840	NC_011100.1	1070683	1071223	D	TA04840	join(<1070683..1070945,1071070..>1071223)	Theileria annulata	3865303
TA04845	mRNA	TA04845	NC_011100.1	1071593	1074905	D	TA04845	join(<1071593..1071764,1072016..1072121,1072314..1072536,1072592..1072645,1072960..1073442,1073661..1074372,1074766..>1074905)	Theileria annulata	3865304
TA04855	mRNA	TA04855	NC_011100.1	1076974	1080959	R	TA04855	complement(join(<1076974..1077248,1077436..1077611,1077681..1077924,1078333..1078878,1079130..1079480,1079587..1080021,1080269..>1080959))	Theileria annulata	3864929
TA04865	mRNA	TA04865	NC_011100.1	1081486	1085446	D	TA04865	join(<1081486..1081729,1082043..1082116,1082146..1082280,1082572..1082812,1083080..1083336,1083510..1084440,1084511..1084583,1084622..1084652,1084731..1085119,1085278..>1085446)	Theileria annulata	3864931
TA04870	mRNA	TA04870	NC_011100.1	1085657	1092625	D	TA04870	<1085657..>1092625	Theileria annulata	3864932
TA04875	mRNA	TA04875	NC_011100.1	1092847	1097933	R	TA04875	complement(join(<1092847..1094885,1094999..1096273,1096421..>1097933))	Theileria annulata	3864933
TA04880	mRNA	TA04880	NC_011100.1	1098638	1099303	D	TA04880	join(<1098638..1098770,1098828..1098897,1098979..>1099303)	Theileria annulata	3864934
TA04885	mRNA	TA04885	NC_011100.1	1099328	1100428	R	TA04885	complement(<1099328..>1100428)	Theileria annulata	3864935
TA04890	mRNA	TA04890	NC_011100.1	1100613	1103393	D	TA04890	<1100613..>1103393	Theileria annulata	3864936
TA04895	mRNA	TA04895	NC_011100.1	1104039	1105520	D	TA04895	<1104039..>1105520	Theileria annulata	3864937
TA04900	mRNA	TA04900	NC_011100.1	1105953	1107166	R	TA04900	complement(join(<1105953..1106184,1106217..1106322,1106356..1106600,1106633..1106796,1106876..>1107166))	Theileria annulata	3864938
TA04905	mRNA	TA04905	NC_011100.1	1107360	1108683	D	TA04905	join(<1107360..1107454,1107502..1107617,1107647..1107809,1107839..1108323,1108355..1108401,1108444..>1108683)	Theileria annulata	3864939
TA04910	mRNA	TA04910	NC_011100.1	1108927	1110764	D	TA04910	join(<1108927..1109204,1109223..1109267,1109302..1109395,1109525..1109656,1109698..1110033,1110045..1110149,1110206..1110370,1110401..1110523,1110552..>1110764)	Theileria annulata	3864940
TA04920	mRNA	TA04920	NC_011100.1	1111068	1111402	R	TA04920	complement(join(<1111068..1111165,1111195..>1111402))	Theileria annulata	3864942
TA04925	mRNA	TA04925	NC_011100.1	1111507	1112121	D	TA04925	<1111507..>1112121	Theileria annulata	3864943
TA04930	mRNA	TA04930	NC_011100.1	1112219	1113003	R	TA04930	complement(join(<1112219..1112902,1112938..>1113003))	Theileria annulata	3864944
TA04935	mRNA	TA04935	NC_011100.1	1113120	1114105	D	TA04935	join(<1113120..1113214,1113264..1113567,1113607..1113792,1113825..1113873,1113903..>1114105)	Theileria annulata	3864945
TA04940	mRNA	TA04940	NC_011100.1	1114191	1116307	R	TA04940	complement(join(<1114191..1114337,1114370..1114528,1114587..1114698,1114728..1114809,1114858..1115137,1115209..1115774,1115806..>1116307))	Theileria annulata	3864946
TA04945	mRNA	TA04945	NC_011100.1	1116440	1117894	D	TA04945	join(<1116440..1116664,1116703..1116816,1116860..1116962,1117331..1117395,1117433..>1117894)	Theileria annulata	3864947
TA04950	mRNA	TA04950	NC_011100.1	1118151	1119074	R	TA04950	complement(<1118151..>1119074)	Theileria annulata	3864692
TA04955	mRNA	TA04955	NC_011100.1	1119321	1122423	R	TA04955	complement(join(<1119321..1119401,1119434..1119511,1119581..1119710,1119749..1119881,1119910..1120048,1120153..1120328,1120429..1120593,1120624..1120726,1120756..>1122423))	Theileria annulata	3864693
TA04960	mRNA	TA04960	NC_011100.1	1122650	1123937	R	TA04960	complement(join(<1122650..1123350,1123412..>1123937))	Theileria annulata	3864694
TA04965	mRNA	TA04965	NC_011100.1	1124142	1125397	R	TA04965	complement(join(<1124142..1124542,1124728..1124930,1124970..1125024,1125056..1125205,1125259..>1125397))	Theileria annulata	3864695
TA04980	mRNA	TA04980	NC_011100.1	1125741	1127040	R	TA04980	complement(join(<1125741..1126002,1126099..1126535,1126660..1126734,1126799..1126926,1126956..>1127040))	Theileria annulata	3864698
TA04985	mRNA	TA04985	NC_011100.1	1127296	1128755	R	TA04985	complement(join(<1127296..1128009,1128038..1128142,1128204..1128383,1128534..>1128755))	Theileria annulata	3864699
TA04990	mRNA	TA04990	NC_011100.1	1129059	1129650	R	TA04990	complement(join(<1129059..1129089,1129187..1129326,1129418..1129516,1129570..1129611,1129645..>1129650))	Theileria annulata	3864700
TA04995	mRNA	TA04995	NC_011100.1	1129935	1132664	D	TA04995	join(<1129935..1130729,1130759..1131146,1131206..1131343,1131373..1131521,1131553..1131708,1131765..1131943,1132040..1132260,1132291..1132382,1132413..>1132664)	Theileria annulata	3864701
TA05000	mRNA	TA05000	NC_011100.1	1132867	1134025	D	TA05000	join(<1132867..1133820,1133876..>1134025)	Theileria annulata	3864702
TA05005	mRNA	TA05005	NC_011100.1	1134054	1135700	D	TA05005	<1134054..>1135700	Theileria annulata	3864703
TA05010	mRNA	TA05010	NC_011100.1	1135737	1139345	D	TA05010	join(<1135737..1135975,1136005..1136072,1136104..>1139345)	Theileria annulata	3864704
TA05015	mRNA	TA05015	NC_011100.1	1139515	1140090	R	TA05015	complement(<1139515..>1140090)	Theileria annulata	3864705
TA05020	mRNA	TA05020	NC_011100.1	1140342	1142746	R	TA05020	complement(join(<1140342..1140520,1140552..1140747,1140777..1140872,1140904..1141071,1141102..1141378,1141437..1141948,1142131..1142274,1142315..1142401,1142465..1142590,1142639..>1142746))	Theileria annulata	3864706
TA05025	mRNA	TA05025	NC_011100.1	1142860	1144183	R	TA05025	complement(join(<1142860..1143336,1143596..>1144183))	Theileria annulata	3864707
TA05030	mRNA	TA05030	NC_011100.1	1144470	1146083	R	TA05030	complement(join(<1144470..1144871,1144939..1145064,1145106..1145287,1145320..1145397,1145474..1145641,1145672..>1146083))	Theileria annulata	3864708
TA05035	mRNA	TA05035	NC_011100.1	1146133	1146594	R	TA05035	complement(join(<1146133..1146224,1146280..1146381,1146441..>1146594))	Theileria annulata	3864709
TA05040	mRNA	TA05040	NC_011100.1	1147308	1148299	R	TA05040	complement(join(<1147308..1147445,1147479..1147586,1147636..1147797,1147834..1148005,1148034..>1148299))	Theileria annulata	3864710
TA05045	mRNA	TA05045	NC_011100.1	1148396	1150410	R	TA05045	complement(join(<1148396..1148570,1148601..1149133,1149163..1149290,1149346..1149462,1149497..1149622,1149652..1149756,1149786..1149828,1149858..1150348,1150386..>1150410))	Theileria annulata	3864711
TA05050	mRNA	TA05050	NC_011100.1	1150517	1151170	D	TA05050	<1150517..>1151170	Theileria annulata	3864732
TA05055	mRNA	TA05055	NC_011100.1	1152302	1154557	D	TA05055	<1152302..>1154557	Theileria annulata	3864733
TA05060	mRNA	TA05060	NC_011100.1	1155539	1158214	R	TA05060	complement(<1155539..>1158214)	Theileria annulata	3864734
TA05065	mRNA	TA05065	NC_011100.1	1159315	1161086	R	TA05065	complement(join(<1159315..1159576,1159608..1159684,1159714..1159815,1159902..1160319,1160353..1160523,1160575..>1161086))	Theileria annulata	3864735
TA05070	mRNA	TA05070	NC_011100.1	1161103	1162181	R	TA05070	complement(join(<1161103..1161153,1161182..1161433,1161469..1161508,1161538..1161624,1161680..1161747,1161894..>1162181))	Theileria annulata	3864736
TA05075	mRNA	TA05075	NC_011100.1	1162342	1163084	R	TA05075	complement(join(<1162342..1162432,1162525..1162649,1162710..1162823,1162896..>1163084))	Theileria annulata	3864737
TA05085	mRNA	TA05085	NC_011100.1	1163502	1166639	D	TA05085	join(<1163502..1164744,1164795..1165970,1166005..1166075,1166107..1166166,1166212..1166229,1166277..>1166639)	Theileria annulata	3864739
TA05090	mRNA	TA05090	NC_011100.1	1167017	1169769	D	TA05090	join(<1167017..1167767,1167845..1168089,1168161..1168427,1168542..1168793,1168825..1168966,1169118..1169372,1169402..>1169769)	Theileria annulata	3864740
TA05095	mRNA	TA05095	NC_011100.1	1169851	1172978	D	TA05095	join(<1169851..1169990,1170020..1170110,1170141..1170212,1170242..1170385,1170432..1170734,1170821..1171032,1171082..1171155,1171193..1171459,1171522..>1172978)	Theileria annulata	3864741
TA05100	mRNA	TA05100	NC_011100.1	1173085	1174137	R	TA05100	complement(<1173085..>1174137)	Theileria annulata	3864742
TA05105	mRNA	TA05105	NC_011100.1	1175154	1176665	D	TA05105	join(<1175154..1175399,1175460..1175537,1175608..1175811,1175925..1176464,1176558..>1176665)	Theileria annulata	3864743
TA05110	mRNA	TA05110	NC_011100.1	1176923	1180408	D	TA05110	<1176923..>1180408	Theileria annulata	3864744
TA05115	mRNA	TA05115	NC_011100.1	1180771	1182490	D	TA05115	join(<1180771..1180967,1181038..>1182490)	Theileria annulata	3864745
TA05120	mRNA	TA05120	NC_011100.1	1182582	1183175	R	TA05120	complement(join(<1182582..1182710,1182741..1182944,1183026..>1183175))	Theileria annulata	3864746
TA05125	mRNA	TA05125	NC_011100.1	1183767	1185580	D	TA05125	join(<1183767..1183905,1183946..1184068,1184099..1184350,1184441..1185051,1185169..1185444,1185476..>1185580)	Theileria annulata	3864747
TA05130	mRNA	TA05130	NC_011100.1	1185654	1186364	R	TA05130	complement(join(<1185654..1185915,1185947..1186134,1186163..1186258,1186290..>1186364))	Theileria annulata	3864748
TA05145	mRNA	TA05145	NC_011100.1	1187193	1189155	D	TA05145	join(<1187193..1187295,1187332..1187454,1187484..1187735,1187869..1188425,1188497..1188772,1188814..>1189155)	Theileria annulata	3864555
TA05150	mRNA	TA05150	NC_011100.1	1189692	1191179	D	TA05150	join(<1189692..1189839,1189871..1190122,1190178..1190863,1190895..>1191179)	Theileria annulata	3864556
TA05155	mRNA	TA05155	NC_011100.1	1192467	1194379	D	TA05155	join(<1192467..1192489,1192522..1192673,1192788..1192907,1192940..1193191,1193254..1193861,1193983..1194249,1194281..>1194379)	Theileria annulata	3864557
TA05160	mRNA	TA05160	NC_011100.1	1194660	1196423	D	TA05160	join(<1194660..1195922,1196049..>1196423)	Theileria annulata	3864558
TA05165	mRNA	TA05165	NC_011100.1	1196695	1197773	D	TA05165	join(<1196695..1196822,1196957..>1197773)	Theileria annulata	3864559
TA05170	mRNA	TA05170	NC_011100.1	1198014	1199542	D	TA05170	join(<1198014..1198608,1198664..1198983,1199126..1199191,1199223..1199376,1199406..>1199542)	Theileria annulata	3864560
TA05175	mRNA	TA05175	NC_011100.1	1199655	1203128	D	TA05175	join(<1199655..1199779,1199816..1199919,1199952..1199993,1200028..1200364,1200456..1200617,1200647..1200750,1200784..1200992,1201088..1201192,1201244..1201683,1201736..1202009,1202054..1202255,1202390..1202577,1202656..1202841,1202872..1202979,1203015..>1203128)	Theileria annulata	3864561
TA05180	mRNA	TA05180	NC_011100.1	1203426	1204680	R	TA05180	complement(join(<1203426..1203797,1203827..1203961,1204040..1204115,1204148..>1204680))	Theileria annulata	3864562
TA05185	mRNA	TA05185	NC_011100.1	1204937	1205726	R	TA05185	complement(join(<1204937..1205509,1205541..>1205726))	Theileria annulata	3864563
TA05190	mRNA	TA05190	NC_011100.1	1206156	1210602	D	TA05190	join(<1206156..1207751,1207808..1209994,1210189..1210278,1210348..>1210602)	Theileria annulata	3864564
TA05200	mRNA	TA05200	NC_011100.1	1210647	1211558	R	TA05200	complement(<1210647..>1211558)	Theileria annulata	3864566
TA05205	mRNA	TA05205	NC_011100.1	1211728	1212302	R	TA05205	complement(join(<1211728..1212051,1212151..1212206,1212239..>1212302))	Theileria annulata	3864567
TA05210	mRNA	TA05210	NC_011100.1	1212527	1216391	R	TA05210	complement(join(<1212527..1213441,1213537..1216226,1216256..>1216391))	Theileria annulata	3864568
TA05215	mRNA	TA05215	NC_011100.1	1216686	1222033	D	TA05215	join(<1216686..1216839,1216881..1217049,1217085..1217246,1217308..1217410,1217475..1217620,1217685..1217814,1217844..1217911,1218011..1218104,1218136..1218217,1218248..1218535,1218653..1219631,1219726..1219852,1219918..1220468,1220529..1220757,1220923..1221202,1221307..1221482,1221564..1221643,1221754..>1222033)	Theileria annulata	3864569
TA05220	mRNA	TA05220	NC_011100.1	1222049	1224973	R	TA05220	complement(join(<1222049..1223240,1223322..1224045,1224155..1224667,1224766..>1224973))	Theileria annulata	3864570
TA05225	mRNA	TA05225	NC_011100.1	1226562	1227838	R	TA05225	complement(join(<1226562..1226795,1226867..1227432,1227572..1227639,1227741..>1227838))	Theileria annulata	3864571
TA05230	mRNA	TA05230	NC_011100.1	1228184	1233454	D	TA05230	join(<1228184..1228535,1228688..1229247,1229355..1229445,1229555..1229739,1229921..1230067,1230142..1230570,1230672..1230932,1231220..1231254,1231482..1231666,1231851..>1233454)	Theileria annulata	3864572
TA05235	mRNA	TA05235	NC_011100.1	1234368	1235291	D	TA05235	join(<1234368..1234617,1234660..>1235291)	Theileria annulata	3864573
TA05240	mRNA	TA05240	NC_011100.1	1235324	1236252	D	TA05240	join(<1235324..1235916,1235952..>1236252)	Theileria annulata	3864574
TA05245	mRNA	TA05245	NC_011100.1	1236264	1236873	D	TA05245	join(<1236264..1236391,1236465..>1236873)	Theileria annulata	3864870
TA05250	mRNA	TA05250	NC_011100.1	1236984	1240066	D	TA05250	join(<1236984..1237175,1237214..1238161,1238206..1239553,1239651..>1240066)	Theileria annulata	3864871
TA05255	mRNA	TA05255	NC_011100.1	1240292	1240738	D	TA05255	<1240292..>1240738	Theileria annulata	3864872
TA17570	mRNA	TA17570	NC_011100.1	1240751	1242931	D	TA17570	<1240751..>1242931	Theileria annulata	3864586
TA17575	mRNA	TA17575	NC_011100.1	1244176	1244709	D	TA17575	<1244176..>1244709	Theileria annulata	3864587
TA17580	mRNA	TA17580	NC_011100.1	1245008	1245337	D	TA17580	<1245008..>1245337	Theileria annulata	3864588
TA17585	mRNA	TA17585	NC_011100.1	1246625	1248340	R	TA17585	complement(<1246625..>1248340)	Theileria annulata	3864589
TA17590	mRNA	TA17590	NC_011100.1	1250494	1255756	D	TA17590	join(<1250494..1252024,1252169..1253071,1253168..1253305,1253337..1253744,1253835..1254022,1254052..1254285,1254362..>1255756)	Theileria annulata	3864590
TA17595	mRNA	TA17595	NC_011100.1	1256488	1256709	D	TA17595	<1256488..>1256709	Theileria annulata	3864591
TA17600	mRNA	TA17600	NC_011100.1	1257518	1258713	D	TA17600	join(<1257518..1258237,1258258..>1258713)	Theileria annulata	3864592
TA17605	mRNA	TA17605	NC_011100.1	1258804	1259328	D	TA17605	<1258804..>1259328	Theileria annulata	3864593
TA17610	mRNA	TA17610	NC_011100.1	1260271	1260498	D	TA17610	<1260271..>1260498	Theileria annulata	3864594
TA17615	mRNA	TA17615	NC_011100.1	1260704	1261402	D	TA17615	<1260704..>1261402	Theileria annulata	3865343
TA17720	mRNA	TA17720	NC_011100.1	1261616	1262317	R	TA17720	complement(join(<1261616..1261843,1261899..1262053,1262200..>1262317))	Theileria annulata	3865168
TA17775	mRNA	TA17775	NC_011100.1	1262407	1262646	R	TA17775	complement(<1262407..>1262646)	Theileria annulata	3865179
TA17780	mRNA	TA17780	NC_011100.1	1263595	1267149	D	TA17780	join(<1263595..1263705,1263817..1264300,1264352..>1267149)	Theileria annulata	3865180
TA17885	mRNA	TA17885	NC_011100.1	1267623	1270094	R	TA17885	complement(join(<1267623..1267820,1267871..1269469,1269510..1269739,1269872..>1270094))	Theileria annulata	3864995
TA17940	mRNA	TA17940	NC_011100.1	1270411	1270912	R	TA17940	complement(join(<1270411..1270572,1270634..>1270912))	Theileria annulata	3864914
TA17945	mRNA	TA17945	NC_011100.1	1271088	1271673	D	TA17945	join(<1271088..1271256,1271316..1271433,1271508..>1271673)	Theileria annulata	3864915
TA18050	mRNA	TA18050	NC_011100.1	1271723	1272197	R	TA18050	complement(join(<1271723..1271993,1272115..>1272197))	Theileria annulata	3864641
TA18055	mRNA	TA18055	NC_011100.1	1272928	1273966	D	TA18055	join(<1272928..1273182,1273328..>1273966)	Theileria annulata	3864642
TA18160	mRNA	TA18160	NC_011100.1	1274014	1275248	R	TA18160	complement(join(<1274014..1274209,1274254..1274632,1274695..1275094,1275198..>1275248))	Theileria annulata	3864722
TA18215	mRNA	TA18215	NC_011100.1	1275442	1275910	R	TA18215	complement(join(<1275442..1275589,1275666..>1275910))	Theileria annulata	3865041
TA18270	mRNA	TA18270	NC_011100.1	1276155	1278824	R	TA18270	complement(join(<1276155..1276314,1276346..1276420,1276489..1276632,1276697..1276916,1277083..1277128,1277191..1277700,1277769..1278006,1278103..1278180,1278212..1278297,1278340..1278491,1278554..>1278824))	Theileria annulata	3865052
TA18275	mRNA	TA18275	NC_011100.1	1279552	1284240	D	TA18275	join(<1279552..1280026,1280110..1283574,1283651..>1284240)	Theileria annulata	3865053
TA18380	mRNA	TA18380	NC_011100.1	1284393	1284959	R	TA18380	complement(<1284393..>1284959)	Theileria annulata	3865155
TA18385	mRNA	TA18385	NC_011100.1	1285214	1286110	D	TA18385	<1285214..>1286110	Theileria annulata	3865156
TA18480	mRNA	TA18480	NC_011100.1	1286180	1287659	R	TA18480	complement(join(<1286180..1286750,1286781..1286874,1286930..1287110,1287197..1287345,1287377..>1287659))	Theileria annulata	3864769
TA18485	mRNA	TA18485	NC_011100.1	1287720	1289369	D	TA18485	join(<1287720..1287990,1288086..1288244,1288309..1288473,1288539..1288826,1288892..1289097,1289157..>1289369)	Theileria annulata	3864770
TA18490	mRNA	TA18490	NC_011100.1	1290110	1290939	D	TA18490	join(<1290110..1290350,1290397..1290456,1290533..>1290939)	Theileria annulata	3864771
TA18495	mRNA	TA18495	NC_011100.1	1291163	1303270	D	TA18495	join(<1291163..1291761,1291801..1294388,1294420..1294524,1294556..1296535,1296618..1302377,1302502..1302859,1302919..>1303270)	Theileria annulata	3865059
TA18500	mRNA	TA18500	NC_011100.1	1303918	1304360	D	TA18500	join(<1303918..1303993,1304026..>1304360)	Theileria annulata	3865060
TA18505	mRNA	TA18505	NC_011100.1	1304598	1305098	D	TA18505	join(<1304598..1304694,1304773..>1305098)	Theileria annulata	3865061
TA18510	mRNA	TA18510	NC_011100.1	1305303	1305566	D	TA18510	<1305303..>1305566	Theileria annulata	3865062
TA18515	mRNA	TA18515	NC_011100.1	1305858	1307902	R	TA18515	complement(join(<1305858..1306085,1306118..1306282,1306313..1306413,1306459..1306516,1306579..1306761,1306818..1307051,1307084..1307221,1307253..1307422,1307496..1307558,1307588..1307660,1307693..>1307902))	Theileria annulata	3865063
TA18520	mRNA	TA18520	NC_011100.1	1308078	1309286	R	TA18520	complement(<1308078..>1309286)	Theileria annulata	3865064
TA18525	mRNA	TA18525	NC_011100.1	1309495	1310160	R	TA18525	complement(join(<1309495..1309581,1309612..1309731,1309762..1309862,1309893..>1310160))	Theileria annulata	3865065
TA18530	mRNA	TA18530	NC_011100.1	1310439	1312228	D	TA18530	join(<1310439..1310522,1310566..1311072,1311103..1311609,1311744..1311991,1312020..1312090,1312164..>1312228)	Theileria annulata	3865066
TA18535	mRNA	TA18535	NC_011100.1	1312476	1313426	D	TA18535	<1312476..>1313426	Theileria annulata	3865067
TA18540	mRNA	TA18540	NC_011100.1	1313640	1314569	D	TA18540	<1313640..>1314569	Theileria annulata	3865068
TA18545	mRNA	TA18545	NC_011100.1	1315165	1316538	D	TA18545	<1315165..>1316538	Theileria annulata	3865069
TA18550	mRNA	TA18550	NC_011100.1	1316740	1318719	R	TA18550	complement(join(<1316740..1316856,1316909..1317023,1317053..1317119,1317151..1317198,1317230..1317296,1317410..1317804,1317931..1318062,1318203..>1318719))	Theileria annulata	3865070
TA18555	mRNA	TA18555	NC_011100.1	1319648	1321681	D	TA18555	join(<1319648..1319700,1319741..1319859,1319984..1320007,1320038..1320210,1320317..1320554,1320730..1320971,1321112..1321284,1321310..1321375,1321443..1321464,1321517..>1321681)	Theileria annulata	3865071
TA18560	mRNA	TA18560	NC_011100.1	1321897	1322586	R	TA18560	complement(join(<1321897..1322489,1322532..>1322586))	Theileria annulata	3865072
TA18565	mRNA	TA18565	NC_011100.1	1322874	1325537	D	TA18565	join(<1322874..1322933,1322974..1323168,1323284..1323438,1323685..1323906,1323937..1324087,1324357..1324599,1324750..1324890,1325031..1325225,1325352..>1325537)	Theileria annulata	3865073
TA18570	mRNA	TA18570	NC_011100.1	1325797	1326641	D	TA18570	join(<1325797..1325844,1325916..1326246,1326305..1326504,1326537..>1326641)	Theileria annulata	3865074
TA18575	mRNA	TA18575	NC_011100.1	1328334	1328723	D	TA18575	<1328334..>1328723	Theileria annulata	3865075
TA18580	mRNA	TA18580	NC_011100.1	1329098	1330349	D	TA18580	join(<1329098..1329268,1329369..1329522,1329658..1329745,1329881..1330034,1330119..>1330349)	Theileria annulata	3865076
TA18585	mRNA	TA18585	NC_011100.1	1330528	1331979	D	TA18585	<1330528..>1331979	Theileria annulata	3865077
TA18590	mRNA	TA18590	NC_011100.1	1332236	1332908	D	TA18590	join(<1332236..1332617,1332668..1332823,1332853..>1332908)	Theileria annulata	3865078
TA18595	mRNA	TA18595	NC_011100.1	1332944	1333739	D	TA18595	join(<1332944..1333252,1333281..1333339,1333370..1333587,1333618..>1333739)	Theileria annulata	3865247
TA18600	mRNA	TA18600	NC_011100.1	1333940	1334428	R	TA18600	complement(<1333940..>1334428)	Theileria annulata	3865248
TA18605	mRNA	TA18605	NC_011100.1	1334793	1336709	R	TA18605	complement(join(<1334793..1335212,1335359..1335419,1335547..1335636,1335727..1335874,1335956..>1336709))	Theileria annulata	3865249
TA18610	mRNA	TA18610	NC_011100.1	1337446	1337733	D	TA18610	<1337446..>1337733	Theileria annulata	3865250
TA18615	mRNA	TA18615	NC_011100.1	1337974	1340501	D	TA18615	join(<1337974..1338141,1338302..1338474,1338634..1339142,1339403..1339540,1339688..1339879,1340044..>1340501)	Theileria annulata	3865251
TA18620	mRNA	TA18620	NC_011100.1	1341360	1343348	R	TA18620	complement(join(<1341360..1341583,1341737..>1343348))	Theileria annulata	3865252
TA18625	mRNA	TA18625	NC_011100.1	1343994	1345058	R	TA18625	complement(join(<1343994..1344161,1344205..1344758,1344917..>1345058))	Theileria annulata	3865253
TA18630	mRNA	TA18630	NC_011100.1	1345252	1349055	R	TA18630	complement(join(<1345252..1345590,1345714..1345813,1345844..1345926,1346115..1346210,1346377..1346505,1346561..1346794,1346951..1347087,1347119..1347364,1347498..1348271,1348308..>1349055))	Theileria annulata	3865254
TA18635	mRNA	TA18635	NC_011100.1	1349402	1350325	R	TA18635	complement(join(<1349402..1349676,1349746..1349772,1349947..1350090,1350277..>1350325))	Theileria annulata	3865255
TA18640	mRNA	TA18640	NC_011100.1	1350742	1351674	D	TA18640	join(<1350742..1350765,1350887..1351056,1351089..>1351674)	Theileria annulata	3865256
TA18645	mRNA	TA18645	NC_011100.1	1352323	1353947	D	TA18645	join(<1352323..1352871,1352907..>1353947)	Theileria annulata	3865257
TA18650	mRNA	TA18650	NC_011100.1	1354205	1355760	R	TA18650	complement(join(<1354205..1354851,1354945..1355615,1355744..>1355760))	Theileria annulata	3865258
TA18655	mRNA	TA18655	NC_011100.1	1356447	1358177	R	TA18655	complement(<1356447..>1358177)	Theileria annulata	3865259
TA18660	mRNA	TA18660	NC_011100.1	1359467	1360822	R	TA18660	complement(join(<1359467..1359697,1359747..1359843,1359901..1360238,1360389..1360456,1360490..1360587,1360635..>1360822))	Theileria annulata	3865260
TA18665	mRNA	TA18665	NC_011100.1	1360987	1362181	D	TA18665	join(<1360987..1361074,1361223..1361312,1361483..1361567,1361603..1361715,1361771..1361879,1361899..1361989,1362032..>1362181)	Theileria annulata	3865261
TA18670	mRNA	TA18670	NC_011100.1	1362817	1363206	D	TA18670	<1362817..>1363206	Theileria annulata	3865262
TA18675	mRNA	TA18675	NC_011100.1	1363498	1365291	R	TA18675	complement(<1363498..>1365291)	Theileria annulata	3865263
TA18680	mRNA	TA18680	NC_011100.1	1366740	1367387	R	TA18680	complement(<1366740..>1367387)	Theileria annulata	3865264
TA18685	mRNA	TA18685	NC_011100.1	1367538	1368421	D	TA18685	join(<1367538..1367647,1367734..>1368421)	Theileria annulata	3865265
TA18690	mRNA	TA18690	NC_011100.1	1368708	1373412	R	TA18690	complement(join(<1368708..1368850,1369026..1369383,1369419..1369437,1369491..1370382,1370433..1370609,1370674..1371506,1371608..1373050,1373234..>1373412))	Theileria annulata	3864810
TA18695	mRNA	TA18695	NC_011100.1	1373712	1374108	D	TA18695	join(<1373712..1373720,1373801..1373906,1373993..>1374108)	Theileria annulata	3864811
TA18700	mRNA	TA18700	NC_011100.1	1374749	1375636	D	TA18700	<1374749..>1375636	Theileria annulata	3864812
TA18705	mRNA	TA18705	NC_011100.1	1375718	1376704	R	TA18705	complement(<1375718..>1376704)	Theileria annulata	3864813
TA18710	mRNA	TA18710	NC_011100.1	1377177	1377583	D	TA18710	join(<1377177..1377233,1377299..>1377583)	Theileria annulata	3864814
TA18715	mRNA	TA18715	NC_011100.1	1377731	1379635	D	TA18715	<1377731..>1379635	Theileria annulata	3864815
TA18720	mRNA	TA18720	NC_011100.1	1379876	1381373	R	TA18720	complement(join(<1379876..1380116,1380147..1380220,1380286..1380447,1380539..1380705,1380738..1380816,1380862..1380926,1381013..>1381373))	Theileria annulata	3864816
TA18725	mRNA	TA18725	NC_011100.1	1381576	1382563	D	TA18725	join(<1381576..1381614,1381655..1381816,1381892..1382071,1382146..1382331,1382408..>1382563)	Theileria annulata	3864817
TA18730	mRNA	TA18730	NC_011100.1	1382717	1383486	D	TA18730	join(<1382717..1382969,1383116..>1383486)	Theileria annulata	3864818
TA18735	mRNA	TA18735	NC_011100.1	1383816	1386185	D	TA18735	<1383816..>1386185	Theileria annulata	3864819
TA18740	mRNA	TA18740	NC_011100.1	1386371	1387472	R	TA18740	complement(join(<1386371..1386421,1386504..1386587,1386621..1386665,1386695..1386741,1386821..1386887,1386927..1386999,1387037..1387092,1387175..1387219,1387260..1387345,1387424..>1387472))	Theileria annulata	3864820
TA18745	mRNA	TA18745	NC_011100.1	1387532	1388241	R	TA18745	complement(join(<1387532..1387781,1387826..>1388241))	Theileria annulata	3864821
TA18750	mRNA	TA18750	NC_011100.1	1389168	1389590	R	TA18750	complement(<1389168..>1389590)	Theileria annulata	3864822
TA18755	mRNA	TA18755	NC_011100.1	1389799	1390749	R	TA18755	complement(<1389799..>1390749)	Theileria annulata	3864823
TA18760	mRNA	TA18760	NC_011100.1	1390957	1391700	R	TA18760	complement(<1390957..>1391700)	Theileria annulata	3864824
TA18765	mRNA	TA18765	NC_011100.1	1391881	1392618	R	TA18765	complement(<1391881..>1392618)	Theileria annulata	3864825
TA18770	mRNA	TA18770	NC_011100.1	1392969	1393859	R	TA18770	complement(<1392969..>1393859)	Theileria annulata	3864826
TA18775	mRNA	TA18775	NC_011100.1	1394594	1396738	D	TA18775	join(<1394594..1394640,1394678..1394744,1394821..1394938,1395017..1395104,1395135..1395367,1395406..1395572,1395640..1395786,1395851..1396299,1396345..1396540,1396619..>1396738)	Theileria annulata	3864827
TA18780	mRNA	TA18780	NC_011100.1	1396777	1397737	R	TA18780	complement(join(<1396777..1396997,1397029..1397103,1397134..>1397737))	Theileria annulata	3864828
TA18785	mRNA	TA18785	NC_011100.1	1398044	1398790	D	TA18785	<1398044..>1398790	Theileria annulata	3864829
TA18790	mRNA	TA18790	NC_011100.1	1399354	1402463	R	TA18790	complement(join(<1399354..1399528,1399680..1399715,1399796..1400051,1400131..1400328,1400360..1400603,1400628..1400770,1400863..1401856,1401867..1402072,1402151..1402209,1402251..1402369,1402404..>1402463))	Theileria annulata	3864948
TA18795	mRNA	TA18795	NC_011100.1	1402909	1405489	D	TA18795	join(<1402909..1403000,1403057..1403403,1403434..1403828,1403860..1403927,1403979..1404294,1404387..1404488,1404521..1404787,1404885..1404957,1404987..1405317,1405363..>1405489)	Theileria annulata	3864949
TA18800	mRNA	TA18800	NC_011100.1	1405833	1407839	R	TA18800	complement(<1405833..>1407839)	Theileria annulata	3864950
TA18805	mRNA	TA18805	NC_011100.1	1408365	1408619	R	TA18805	complement(<1408365..>1408619)	Theileria annulata	3864951
TA18810	mRNA	TA18810	NC_011100.1	1408968	1412591	D	TA18810	<1408968..>1412591	Theileria annulata	3864952
TA18815	mRNA	TA18815	NC_011100.1	1412931	1413339	D	TA18815	join(<1412931..1412961,1413033..1413224,1413266..>1413339)	Theileria annulata	3864953
TA18820	mRNA	TA18820	NC_011100.1	1413911	1420027	D	TA18820	join(<1413911..1414561,1414623..1414979,1415057..1418915,1419038..1419357,1419449..>1420027)	Theileria annulata	3864954
TA18825	mRNA	TA18825	NC_011100.1	1420112	1421740	D	TA18825	join(<1420112..1420487,1420521..1421232,1421263..1421357,1421534..1421621,1421662..>1421740)	Theileria annulata	3864955
TA18830	mRNA	TA18830	NC_011100.1	1422200	1426878	D	TA18830	join(<1422200..1422613,1422646..1422741,1422774..1422861,1422893..1423020,1423089..1423274,1423335..1423421,1423453..1423596,1423649..1423820,1423851..1424016,1424062..1424302,1424344..1424613,1424646..1424738,1424805..1424994,1425078..1425173,1425247..1425447,1425510..1425618,1425692..1425831,1425893..1426034,1426070..1426205,1426235..1426300,1426357..1426553,1426643..1426690,1426719..>1426878)	Theileria annulata	3864956
TA18835	mRNA	TA18835	NC_011100.1	1427037	1428426	D	TA18835	join(<1427037..1427164,1427236..1427283,1427352..1427460,1427515..1427593,1427696..1427735,1427777..1428046,1428192..>1428426)	Theileria annulata	3864957
TA18840	mRNA	TA18840	NC_011100.1	1428792	1429989	D	TA18840	join(<1428792..1428894,1428926..1428967,1428997..1429077,1429110..1429239,1429325..1429447,1429515..1429681,1429745..>1429989)	Theileria annulata	3864958
TA18845	mRNA	TA18845	NC_011100.1	1430044	1432680	R	TA18845	complement(<1430044..>1432680)	Theileria annulata	3864959
TA18850	mRNA	TA18850	NC_011100.1	1432751	1433356	R	TA18850	complement(<1432751..>1433356)	Theileria annulata	3864960
TA17620	mRNA	TA17620	NC_011100.1	1434127	1435683	D	TA17620	<1434127..>1435683	Theileria annulata	3865344
TA17625	mRNA	TA17625	NC_011100.1	1435767	1438940	R	TA17625	complement(join(<1435767..1436012,1436043..1436129,1436177..1436271,1436301..1436373,1436404..1436439,1436471..1436868,1436946..1437036,1437065..1437174,1437205..1437268,1437313..1437465,1437553..1437777,1437808..1437929,1438000..1438216,1438278..1438292,1438369..1438507,1438559..1438650,1438684..1438802,1438886..>1438940))	Theileria annulata	3865345
TA17630	mRNA	TA17630	NC_011100.1	1439464	1444498	D	TA17630	join(<1439464..1440139,1440183..1440287,1440321..1444099,1444143..1444282,1444369..>1444498)	Theileria annulata	3865346
TA17635	mRNA	TA17635	NC_011100.1	1444509	1445321	R	TA17635	complement(<1444509..>1445321)	Theileria annulata	3865347
TA17640	mRNA	TA17640	NC_011100.1	1445631	1446508	R	TA17640	complement(join(<1445631..1445814,1445868..1446154,1446187..1446245,1446355..1446422,1446459..>1446508))	Theileria annulata	3865348
TA17645	mRNA	TA17645	NC_011100.1	1446771	1453313	R	TA17645	complement(join(<1446771..1450656,1450684..1453158,1453189..>1453313))	Theileria annulata	3865349
TA17650	mRNA	TA17650	NC_011100.1	1454472	1465872	D	TA17650	join(<1454472..1459820,1459861..1465561,1465592..1465673,1465740..>1465872)	Theileria annulata	3865350
TA17655	mRNA	TA17655	NC_011100.1	1466017	1466441	D	TA17655	join(<1466017..1466117,1466159..1466256,1466323..>1466441)	Theileria annulata	3865351
TA17660	mRNA	TA17660	NC_011100.1	1466561	1468926	R	TA17660	complement(join(<1466561..1466713,1466743..1466836,1466869..1467004,1467035..1467099,1467129..1467287,1467322..1467434,1467508..1467591,1467655..1467789,1467819..1468048,1468077..1468197,1468228..1468313,1468377..1468454,1468485..1468574,1468608..1468700,1468740..>1468926))	Theileria annulata	3865352
TA17665	mRNA	TA17665	NC_011100.1	1469098	1469932	D	TA17665	join(<1469098..1469112,1469163..1469226,1469261..1469337,1469372..1469508,1469539..1469787,1469818..>1469932)	Theileria annulata	3865353
TA17670	mRNA	TA17670	NC_011100.1	1470045	1471198	R	TA17670	complement(join(<1470045..1470589,1470618..1470840,1470887..1470972,1471096..>1471198))	Theileria annulata	3865354
TA17680	mRNA	TA17680	NC_011100.1	1471212	1474910	R	TA17680	complement(join(<1471212..1471989,1472017..>1474910))	Theileria annulata	3865355
TA17685	mRNA	TA17685	NC_011100.1	1475894	1477360	D	TA17685	join(<1475894..1477035,1477067..1477120,1477154..1477281,1477311..>1477360)	Theileria annulata	3865356
TA17690	mRNA	TA17690	NC_011100.1	1477529	1479397	R	TA17690	complement(join(<1477529..1479237,1479304..>1479397))	Theileria annulata	3865357
TA17695	mRNA	TA17695	NC_011100.1	1479952	1480584	R	TA17695	complement(<1479952..>1480584)	Theileria annulata	3865358
TA17700	mRNA	TA17700	NC_011100.1	1481139	1481754	R	TA17700	complement(join(<1481139..1481657,1481713..>1481754))	Theileria annulata	3865359
TA17705	mRNA	TA17705	NC_011100.1	1482682	1484775	D	TA17705	join(<1482682..1482792,1482969..1483386,1483419..1483723,1483753..1484220,1484250..1484306,1484341..>1484775)	Theileria annulata	3865360
TA17710	mRNA	TA17710	NC_011100.1	1485043	1486453	D	TA17710	join(<1485043..1485750,1485781..1486203,1486235..>1486453)	Theileria annulata	3865361
TA17715	mRNA	TA17715	NC_011100.1	1486928	1487527	D	TA17715	join(<1486928..1486949,1487012..1487117,1487161..1487406,1487443..>1487527)	Theileria annulata	3865167
TA17725	mRNA	TA17725	NC_011100.1	1487563	1488424	R	TA17725	complement(join(<1487563..1487766,1487797..1487894,1487924..1488271,1488328..>1488424))	Theileria annulata	3865169
TA17730	mRNA	TA17730	NC_011100.1	1488548	1489135	D	TA17730	join(<1488548..1488644,1488698..1488798,1488883..1488996,1489118..>1489135)	Theileria annulata	3865170
TA17735	mRNA	TA17735	NC_011100.1	1489244	1491728	D	TA17735	join(<1489244..1489999,1490029..1490222,1490252..1491208,1491238..1491406,1491473..1491577,1491609..>1491728)	Theileria annulata	3865171
TA17740	mRNA	TA17740	NC_011100.1	1491806	1492761	R	TA17740	complement(join(<1491806..1492356,1492386..>1492761))	Theileria annulata	3865172
TA17745	mRNA	TA17745	NC_011100.1	1493503	1494395	D	TA17745	join(<1493503..1493831,1493863..1494190,1494222..>1494395)	Theileria annulata	3865173
TA17750	mRNA	TA17750	NC_011100.1	1494905	1496909	D	TA17750	join(<1494905..1496536,1496610..>1496909)	Theileria annulata	3865174
TA17755	mRNA	TA17755	NC_011100.1	1497099	1499820	D	TA17755	join(<1497099..1497182,1497211..1497302,1497334..1497511,1497641..1497805,1497832..1497868,1497899..1497968,1497998..1498105,1498214..1498274,1498307..1498349,1498439..1498651,1498719..1498919,1498988..1499060,1499099..1499165,1499208..1499270,1499323..1499373,1499441..1499512,1499575..>1499820)	Theileria annulata	3865175
TA17760	mRNA	TA17760	NC_011100.1	1499881	1502217	R	TA17760	complement(join(<1499881..1500266,1500327..1500408,1500454..1500771,1500859..1500966,1501012..1501187,1501256..1501346,1501386..1501922,1501969..>1502217))	Theileria annulata	3865176
TA17765	mRNA	TA17765	NC_011100.1	1502337	1503288	R	TA17765	complement(join(<1502337..1502559,1502666..>1503288))	Theileria annulata	3865177
TA17770	mRNA	TA17770	NC_011100.1	1503625	1504576	R	TA17770	complement(join(<1503625..1503799,1503872..1503971,1504001..1504050,1504080..1504196,1504276..1504484,1504526..>1504576))	Theileria annulata	3865178
TA17785	mRNA	TA17785	NC_011100.1	1504824	1505549	R	TA17785	complement(join(<1504824..1505063,1505122..1505182,1505272..1505410,1505444..>1505549))	Theileria annulata	3865181
TA17790	mRNA	TA17790	NC_011100.1	1505712	1510970	R	TA17790	complement(join(<1505712..1505741,1505841..1508832,1508860..>1510970))	Theileria annulata	3865182
TA17795	mRNA	TA17795	NC_011100.1	1511264	1512052	R	TA17795	complement(<1511264..>1512052)	Theileria annulata	3865183
TA17800	mRNA	TA17800	NC_011100.1	1512880	1513035	R	TA17800	complement(join(<1512880..1512978,1513018..>1513035))	Theileria annulata	3865184
TA17805	mRNA	TA17805	NC_011100.1	1513206	1514631	R	TA17805	complement(join(<1513206..1513340,1513429..>1514631))	Theileria annulata	3865185
TA17810	mRNA	TA17810	NC_011100.1	1514802	1516685	R	TA17810	complement(join(<1514802..1515011,1515042..1515301,1515331..1515440,1515480..1515596,1515639..1515777,1515834..1515930,1515960..1515994,1516025..1516088,1516118..1516253,1516304..1516408,1516486..1516561,1516607..>1516685))	Theileria annulata	3865186
TA17815	mRNA	TA17815	NC_011100.1	1516764	1517696	R	TA17815	complement(join(<1516764..1516838,1516990..1517015,1517047..1517238,1517268..1517538,1517571..>1517696))	Theileria annulata	3864982
TA17820	mRNA	TA17820	NC_011100.1	1518002	1518485	D	TA17820	join(<1518002..1518120,1518175..1518212,1518247..>1518485)	Theileria annulata	3864983
TA17825	mRNA	TA17825	NC_011100.1	1518619	1520733	R	TA17825	complement(join(<1518619..1518688,1518736..1518818,1518913..1519046,1519077..1519248,1519276..>1520733))	Theileria annulata	3864984
TA17830	mRNA	TA17830	NC_011100.1	1521055	1523256	D	TA17830	join(<1521055..1521154,1521259..1522542,1522601..>1523256)	Theileria annulata	3864985
TA17835	mRNA	TA17835	NC_011100.1	1523538	1525883	R	TA17835	complement(join(<1523538..1523645,1523692..1523982,1524041..1524257,1524328..1524530,1524563..1524619,1524696..1524770,1524822..1524945,1524996..1525134,1525220..1525326,1525380..1525507,1525568..1525704,1525796..>1525883))	Theileria annulata	3864986
TA17840	mRNA	TA17840	NC_011100.1	1526453	1527444	D	TA17840	join(<1526453..1526511,1526543..1526652,1526723..1527233,1527408..>1527444)	Theileria annulata	3864987
TA17845	mRNA	TA17845	NC_011100.1	1527460	1529191	R	TA17845	complement(join(<1527460..1528727,1528768..>1529191))	Theileria annulata	3864988
TA17850	mRNA	TA17850	NC_011100.1	1529399	1531004	R	TA17850	complement(join(<1529399..1529524,1529555..1529806,1529838..1529951,1530006..1530123,1530152..1530199,1530230..1530326,1530356..1530393,1530423..1530496,1530527..1530601,1530635..1530698,1530742..1530819,1530853..>1531004))	Theileria annulata	3864989
TA17855	mRNA	TA17855	NC_011100.1	1531044	1532869	D	TA17855	join(<1531044..1531087,1531209..1531397,1531430..1531510,1531542..1531621,1531655..1531756,1531785..1531971,1532010..1532061,1532091..1532146,1532177..1532232,1532264..1532320,1532382..>1532869)	Theileria annulata	3864990
TA17865	mRNA	TA17865	NC_011100.1	1534630	1536159	D	TA17865	<1534630..>1536159	Theileria annulata	3864991
TA17870	mRNA	TA17870	NC_011100.1	1536299	1537358	R	TA17870	complement(join(<1536299..1536797,1536828..1536943,1536977..1537020,1537050..1537220,1537268..>1537358))	Theileria annulata	3864992
TA17875	mRNA	TA17875	NC_011100.1	1537469	1538377	R	TA17875	complement(join(<1537469..1537779,1537817..1538194,1538236..>1538377))	Theileria annulata	3864993
TA17880	mRNA	TA17880	NC_011100.1	1538504	1540513	R	TA17880	complement(join(<1538504..1538560,1538587..1538960,1538991..1539554,1539566..1539831,1539876..1540140,1540201..1540381,1540454..>1540513))	Theileria annulata	3864994
TA17890	mRNA	TA17890	NC_011100.1	1540611	1542361	R	TA17890	complement(join(<1540611..1540622,1540666..1540720,1540751..1540818,1540853..1540950,1540982..1541083,1541196..1542056,1542088..1542180,1542227..1542287,1542344..>1542361))	Theileria annulata	3864996
TA17895	mRNA	TA17895	NC_011100.1	1543173	1543682	D	TA17895	<1543173..>1543682	Theileria annulata	3864997
TA17900	mRNA	TA17900	NC_011100.1	1543857	1544285	R	TA17900	complement(<1543857..>1544285)	Theileria annulata	3864998
TA17905	mRNA	TA17905	NC_011100.1	1545062	1546162	R	TA17905	complement(<1545062..>1546162)	Theileria annulata	3864999
TA17910	mRNA	TA17910	NC_011100.1	1547230	1547815	D	TA17910	join(<1547230..1547418,1547450..>1547815)	Theileria annulata	3865000
TA17915	mRNA	TA17915	NC_011100.1	1548198	1549616	D	TA17915	<1548198..>1549616	Theileria annulata	3864909
TA17920	mRNA	TA17920	NC_011100.1	1549955	1550755	D	TA17920	<1549955..>1550755	Theileria annulata	3864910
TA17925	mRNA	TA17925	NC_011100.1	1551024	1553147	R	TA17925	complement(join(<1551024..1551457,1551526..1551773,1551847..1552465,1552530..1552865,1552937..>1553147))	Theileria annulata	3864911
TA17930	mRNA	TA17930	NC_011100.1	1553640	1554914	R	TA17930	complement(<1553640..>1554914)	Theileria annulata	3864912
TA17935	mRNA	TA17935	NC_011100.1	1556387	1558288	D	TA17935	join(<1556387..1556897,1556929..1556982,1557037..1557777,1557812..1557966,1558136..>1558288)	Theileria annulata	3864913
TA17950	mRNA	TA17950	NC_011100.1	1558354	1559059	D	TA17950	join(<1558354..1558492,1558647..>1559059)	Theileria annulata	3864916
TA17955	mRNA	TA17955	NC_011100.1	1559349	1559747	D	TA17955	<1559349..>1559747	Theileria annulata	3864917
TA17960	mRNA	TA17960	NC_011100.1	1560100	1560966	D	TA17960	<1560100..>1560966	Theileria annulata	3864918
TA17965	mRNA	TA17965	NC_011100.1	1561181	1561612	D	TA17965	join(<1561181..1561306,1561373..1561449,1561525..>1561612)	Theileria annulata	3864919
TA17970	mRNA	TA17970	NC_011100.1	1562006	1563658	R	TA17970	complement(<1562006..>1563658)	Theileria annulata	3864920
TA17975	mRNA	TA17975	NC_011100.1	1564673	1566280	D	TA17975	<1564673..>1566280	Theileria annulata	3864921
TA17980	mRNA	TA17980	NC_011100.1	1566600	1566996	D	TA17980	join(<1566600..1566702,1566798..1566869,1566908..>1566996)	Theileria annulata	3864922
TA17985	mRNA	TA17985	NC_011100.1	1567165	1568133	R	TA17985	complement(join(<1567165..1567431,1567461..1567499,1567531..1567595,1567628..1567765,1567795..1567981,1568044..>1568133))	Theileria annulata	3864923
TA17990	mRNA	TA17990	NC_011100.1	1568343	1570650	D	TA17990	join(<1568343..1568552,1568591..1568785,1568818..1569001,1569031..1569127,1569158..1569273,1569306..1569446,1569476..1569558,1569590..1569652,1569683..1569787,1570009..1570114,1570228..1570464,1570568..>1570650)	Theileria annulata	3864924
TA17995	mRNA	TA17995	NC_011100.1	1570755	1571077	D	TA17995	join(<1570755..1570808,1570865..>1571077)	Theileria annulata	3864925
TA18000	mRNA	TA18000	NC_011100.1	1571269	1574148	D	TA18000	<1571269..>1574148	Theileria annulata	3864926
TA18005	mRNA	TA18005	NC_011100.1	1574584	1576988	D	TA18005	join(<1574584..1576563,1576627..1576779,1576815..>1576988)	Theileria annulata	3864927
TA18010	mRNA	TA18010	NC_011100.1	1577541	1579043	D	TA18010	<1577541..>1579043	Theileria annulata	3864928
TA18015	mRNA	TA18015	NC_011100.1	1579323	1581535	R	TA18015	complement(join(<1579323..1579479,1579593..1579755,1579785..1580326,1580373..>1581535))	Theileria annulata	3864634
TA18020	mRNA	TA18020	NC_011100.1	1582048	1582945	D	TA18020	join(<1582048..1582096,1582140..1582252,1582323..1582581,1582611..1582695,1582726..>1582945)	Theileria annulata	3864635
TA18025	mRNA	TA18025	NC_011100.1	1583104	1584090	R	TA18025	complement(join(<1583104..1583474,1583517..>1584090))	Theileria annulata	3864636
TA18030	mRNA	TA18030	NC_011100.1	1584231	1585254	R	TA18030	complement(join(<1584231..1584286,1584403..1584657,1584689..1585172,1585249..>1585254))	Theileria annulata	3864637
TA18035	mRNA	TA18035	NC_011100.1	1585813	1586662	R	TA18035	complement(join(<1585813..1586061,1586337..1586515,1586653..>1586662))	Theileria annulata	3864638
TA18040	mRNA	TA18040	NC_011100.1	1587079	1591053	R	TA18040	complement(join(<1587079..1587497,1587569..1588741,1588836..1589372,1589448..>1591053))	Theileria annulata	3864639
TA18045	mRNA	TA18045	NC_011100.1	1591550	1598632	D	TA18045	join(<1591550..1591594,1591703..1591903,1591954..1597761,1597827..1598064,1598121..1598329,1598387..>1598632)	Theileria annulata	3864640
TA18060	mRNA	TA18060	NC_011100.1	1599066	1606340	R	TA18060	complement(<1599066..>1606340)	Theileria annulata	3864643
TA18065	mRNA	TA18065	NC_011100.1	1607237	1607706	D	TA18065	join(<1607237..1607248,1607284..>1607706)	Theileria annulata	3864644
TA18070	mRNA	TA18070	NC_011100.1	1608424	1613928	D	TA18070	join(<1608424..1609981,1610228..>1613928)	Theileria annulata	3864645
TA18075	mRNA	TA18075	NC_011100.1	1614211	1621546	R	TA18075	complement(join(<1614211..1615061,1615165..1615367,1615452..1621350,1621528..>1621546))	Theileria annulata	3864646
TA18080	mRNA	TA18080	NC_011100.1	1622365	1623633	D	TA18080	<1622365..>1623633	Theileria annulata	3864647
TA18085	mRNA	TA18085	NC_011100.1	1623713	1626278	R	TA18085	complement(join(<1623713..1623858,1623952..1624123,1624173..>1626278))	Theileria annulata	3864648
TA18090	mRNA	TA18090	NC_011100.1	1626731	1627388	D	TA18090	join(<1626731..1626761,1626799..>1627388)	Theileria annulata	3864649
TA18095	mRNA	TA18095	NC_011100.1	1627610	1629312	D	TA18095	join(<1627610..1627712,1627809..1627883,1627945..1628128,1628155..1628232,1628263..1628350,1628381..1628404,1628501..1628555,1628635..1628842,1628918..1629004,1629063..1629170,1629210..>1629312)	Theileria annulata	3864650
TA18100	mRNA	TA18100	NC_011100.1	1629429	1631121	D	TA18100	join(<1629429..1629492,1629531..1629674,1629720..1629809,1629842..1629947,1630015..1630138,1630168..>1631121)	Theileria annulata	3864651
TA18105	mRNA	TA18105	NC_011100.1	1631208	1633484	R	TA18105	complement(join(<1631208..1631678,1631709..1631843,1631898..>1633484))	Theileria annulata	3864652
TA18110	mRNA	TA18110	NC_011100.1	1633854	1634884	D	TA18110	join(<1633854..1633865,1633942..1634211,1634366..1634602,1634627..>1634884)	Theileria annulata	3864712
TA18115	mRNA	TA18115	NC_011100.1	1635231	1636403	R	TA18115	complement(<1635231..>1636403)	Theileria annulata	3864713
TA18120	mRNA	TA18120	NC_011100.1	1636593	1643810	R	TA18120	complement(<1636593..>1643810)	Theileria annulata	3864714
TA18125	mRNA	TA18125	NC_011100.1	1644158	1645092	R	TA18125	complement(join(<1644158..1644283,1644315..1644410,1644441..1644509,1644537..1644649,1644681..1644769,1644803..1644892,1644920..>1645092))	Theileria annulata	3864715
TA18130	mRNA	TA18130	NC_011100.1	1645861	1647094	D	TA18130	join(<1645861..1646029,1646123..1646293,1646326..1646589,1646691..>1647094)	Theileria annulata	3864716
TA18135	mRNA	TA18135	NC_011100.1	1647174	1648008	R	TA18135	complement(join(<1647174..1647374,1647492..1647623,1647677..1647820,1647904..>1648008))	Theileria annulata	3864717
TA18140	mRNA	TA18140	NC_011100.1	1656229	1658121	D	TA18140	join(<1656229..1656374,1656533..1656596,1656625..1656759,1656794..1656840,1656966..1657058,1657114..1657246,1657310..1657413,1657519..1657692,1657788..>1658121)	Theileria annulata	3864718
TA18145	mRNA	TA18145	NC_011100.1	1658386	1659741	R	TA18145	complement(join(<1658386..1658614,1658760..1658885,1658913..1658995,1659041..1659097,1659131..1659283,1659323..1659388,1659468..1659581,1659616..>1659741))	Theileria annulata	3864719
TA18150	mRNA	TA18150	NC_011100.1	1659892	1660238	D	TA18150	join(<1659892..1659904,1659938..1659994,1660024..>1660238)	Theileria annulata	3864720
TA18155	mRNA	TA18155	NC_011100.1	1660376	1662034	R	TA18155	complement(join(<1660376..1661419,1661459..1661541,1661569..>1662034))	Theileria annulata	3864721
TA18165	mRNA	TA18165	NC_011100.1	1662284	1664653	D	TA18165	join(<1662284..1662389,1662419..1662614,1662645..1662710,1662740..1662887,1662917..1663261,1663358..1663423,1663495..1663656,1663685..1663791,1663834..1663882,1663913..1663938,1664096..1664208,1664239..1664347,1664449..>1664653)	Theileria annulata	3864723
TA18170	mRNA	TA18170	NC_011100.1	1664889	1666842	D	TA18170	join(<1664889..1665075,1665139..1665212,1665531..1665713,1665745..1665867,1665971..1666111,1666228..1666541,1666641..>1666842)	Theileria annulata	3864724
TA18175	mRNA	TA18175	NC_011100.1	1666956	1668017	R	TA18175	complement(join(<1666956..1667044,1667087..1667250,1667335..1667390,1667483..1667584,1667651..1667839,1667871..1667954,1667985..>1668017))	Theileria annulata	3864725
TA18180	mRNA	TA18180	NC_011100.1	1668103	1668979	R	TA18180	complement(join(<1668103..1668285,1668345..1668501,1668576..1668718,1668749..1668844,1668896..>1668979))	Theileria annulata	3864726
TA18185	mRNA	TA18185	NC_011100.1	1670491	1671303	D	TA18185	join(<1670491..1670864,1670941..1671139,1671169..>1671303)	Theileria annulata	3864727
TA18190	mRNA	TA18190	NC_011100.1	1671529	1672845	R	TA18190	complement(join(<1671529..1671623,1671786..1671797,1671888..1672055,1672139..1672201,1672232..1672268,1672299..1672388,1672419..1672480,1672576..1672680,1672725..>1672845))	Theileria annulata	3864728
TA18195	mRNA	TA18195	NC_011100.1	1673016	1673939	R	TA18195	complement(<1673016..>1673939)	Theileria annulata	3864729
TA18200	mRNA	TA18200	NC_011100.1	1674351	1675670	D	TA18200	join(<1674351..1674530,1674572..1674645,1674707..1674772,1674802..1674846,1675215..1675302,1675449..>1675670)	Theileria annulata	3864730
TA18205	mRNA	TA18205	NC_011100.1	1675762	1680026	D	TA18205	join(<1675762..1675772,1675800..1675981,1676069..1676238,1676394..1676640,1676672..1676772,1676803..1677003,1677035..1677085,1677155..1677209,1677251..1677545,1677575..1677683,1677714..1677883,1677917..1678004,1678035..1678106,1678138..1678218,1678253..1678301,1678381..1678427,1678460..1678498,1678540..1678734,1678765..1678855,1678892..1678986,1679017..1679100,1679130..>1680026)	Theileria annulata	3864731
TA18210	mRNA	TA18210	NC_011100.1	1680643	1686669	D	TA18210	<1680643..>1686669	Theileria annulata	3865040
TA18220	mRNA	TA18220	NC_011100.1	1686866	1690318	R	TA18220	complement(<1686866..>1690318)	Theileria annulata	3865042
TA18225	mRNA	TA18225	NC_011100.1	1690473	1692445	R	TA18225	complement(join(<1690473..1691877,1691999..1692210,1692272..>1692445))	Theileria annulata	3865043
TA18230	mRNA	TA18230	NC_011100.1	1692603	1695269	R	TA18230	complement(join(<1692603..1694622,1694653..>1695269))	Theileria annulata	3865044
TA18235	mRNA	TA18235	NC_011100.1	1695781	1698303	R	TA18235	complement(join(<1695781..1696271,1696301..1696506,1696566..1696703,1696752..1697347,1697377..1697471,1697502..1697997,1698031..>1698303))	Theileria annulata	3865045
TA18240	mRNA	TA18240	NC_011100.1	1698544	1703776	D	TA18240	join(<1698544..1698636,1698671..>1703776)	Theileria annulata	3865046
TA18245	mRNA	TA18245	NC_011100.1	1703960	1704847	R	TA18245	complement(join(<1703960..1704328,1704387..1704622,1704763..>1704847))	Theileria annulata	3865047
TA18250	mRNA	TA18250	NC_011100.1	1704954	1705720	D	TA18250	join(<1704954..1704999,1705034..1705098,1705138..1705281,1705314..1705397,1705447..1705492,1705554..>1705720)	Theileria annulata	3865048
TA18255	mRNA	TA18255	NC_011100.1	1705814	1706522	R	TA18255	complement(join(<1705814..1705949,1705987..1706050,1706111..1706294,1706326..1706436,1706466..>1706522))	Theileria annulata	3865049
TA18260	mRNA	TA18260	NC_011100.1	1706718	1709152	R	TA18260	complement(join(<1706718..1708129,1708159..>1709152))	Theileria annulata	3865050
TA18265	mRNA	TA18265	NC_011100.1	1709339	1710744	D	TA18265	join(<1709339..1709428,1709517..1709720,1709773..1709928,1709962..1710020,1710050..1710098,1710130..1710207,1710277..1710358,1710393..1710546,1710573..>1710744)	Theileria annulata	3865051
TA18280	mRNA	TA18280	NC_011100.1	1710917	1713350	R	TA18280	complement(join(<1710917..1711896,1711973..>1713350))	Theileria annulata	3865054
TA18285	mRNA	TA18285	NC_011100.1	1714530	1719546	D	TA18285	join(<1714530..1714541,1714789..1714992,1715084..1715271,1715329..1715843,1716028..1716111,1716145..1716314,1716357..1716786,1716847..1717262,1717303..1717454,1717484..1717607,1717649..1717736,1717768..1717847,1717877..1717952,1718024..1718116,1718334..1718378,1718421..1718620,1718678..1718889,1718922..1719106,1719161..>1719546)	Theileria annulata	3865055
TA18290	mRNA	TA18290	NC_011100.1	1719639	1721072	D	TA18290	join(<1719639..1720185,1720240..1720306,1720339..1720453,1720485..1720639,1720693..1720780,1720863..>1721072)	Theileria annulata	3865056
TA18295	mRNA	TA18295	NC_011100.1	1721160	1722140	D	TA18295	<1721160..>1722140	Theileria annulata	3865057
TA18300	mRNA	TA18300	NC_011100.1	1722327	1722964	D	TA18300	join(<1722327..1722477,1722564..>1722964)	Theileria annulata	3865058
TA18305	mRNA	TA18305	NC_011100.1	1723042	1724600	R	TA18305	complement(join(<1723042..1723160,1723190..1723393,1723431..1723763,1723830..1723913,1723944..1724073,1724104..1724133,1724281..1724385,1724419..1724478,1724544..>1724600))	Theileria annulata	3865138
TA18315	mRNA	TA18315	NC_011100.1	1725779	1727413	R	TA18315	complement(join(<1725779..1725999,1726033..1726189,1726237..1726320,1726351..1726465,1726496..1726554,1726585..1726749,1726793..1726885,1726978..1727130,1727207..1727295,1727329..>1727413))	Theileria annulata	3865139
TA18320	mRNA	TA18320	NC_011100.1	1727558	1728491	R	TA18320	complement(join(<1727558..1727852,1727926..1728059,1728114..1728283,1728380..>1728491))	Theileria annulata	3865140
TA18325	mRNA	TA18325	NC_011100.1	1728633	1729818	R	TA18325	complement(join(<1728633..1729003,1729033..1729226,1729277..1729312,1729340..1729479,1729507..1729697,1729728..>1729818))	Theileria annulata	3865141
TA18330	mRNA	TA18330	NC_011100.1	1730209	1732143	D	TA18330	<1730209..>1732143	Theileria annulata	3865142
TA18335	mRNA	TA18335	NC_011100.1	1732463	1733095	R	TA18335	complement(join(<1732463..1732566,1732596..1732876,1733004..>1733095))	Theileria annulata	3865143
TA18340	mRNA	TA18340	NC_011100.1	1733757	1734714	R	TA18340	complement(join(<1733757..1733963,1734048..1734131,1734425..1734616,1734649..>1734714))	Theileria annulata	3865144
TA18345	mRNA	TA18345	NC_011100.1	1735762	1738711	R	TA18345	complement(join(<1735762..1735896,1735929..1736131,1736253..1736330,1736477..1736557,1736715..1736781,1736935..1737022,1737054..1737183,1737464..1737778,1737809..1737864,1737897..1737952,1738035..1738564,1738594..>1738711))	Theileria annulata	3865145
TA18350	mRNA	TA18350	NC_011100.1	1739020	1741835	R	TA18350	complement(join(<1739020..1739442,1739600..1739841,1740055..1740405,1740578..>1741835))	Theileria annulata	3865146
TA18355	mRNA	TA18355	NC_011100.1	1741992	1743674	R	TA18355	complement(join(<1741992..1742281,1742492..1743037,1743269..>1743674))	Theileria annulata	3865147
TA18360	mRNA	TA18360	NC_011100.1	1743976	1745200	D	TA18360	join(<1743976..1744255,1744335..1744484,1744718..1744840,1744913..1745038,1745070..>1745200)	Theileria annulata	3865148
TA18361	mRNA	TA18361	NC_011100.1	1745526	1746437	D	TA18361	<1745526..>1746437	Theileria annulata	3865149
TA18362	mRNA	TA18362	NC_011100.1	1746553	1747834	D	TA18362	join(<1746553..1746623,1746717..1746836,1746941..1747046,1747078..1747146,1747176..1747233,1747343..1747421,1747528..1747670,1747701..>1747834)	Theileria annulata	3865150
TA18363	mRNA	TA18363	NC_011100.1	1747993	1750038	D	TA18363	<1747993..>1750038	Theileria annulata	3865151
TA18365	mRNA	TA18365	NC_011100.1	1750292	1750792	D	TA18365	<1750292..>1750792	Theileria annulata	3865152
TA18370	mRNA	TA18370	NC_011100.1	1751363	1754178	R	TA18370	complement(join(<1751363..1751501,1751612..1751684,1751713..1751760,1751791..1751909,1752305..1752532,1752759..1752915,1753056..1753278,1753657..1753967,1754097..>1754178))	Theileria annulata	3865153
TA18375	mRNA	TA18375	NC_011100.1	1754644	1758275	D	TA18375	join(<1754644..1755343,1755453..1755656,1755798..1755808,1756087..1757244,1757382..1757718,1757860..>1758275)	Theileria annulata	3865154
TA18390	mRNA	TA18390	NC_011100.1	1758379	1762251	D	TA18390	join(<1758379..1758723,1758779..1758910,1758991..1760388,1760503..1761700,1761851..>1762251)	Theileria annulata	3865157
TA18395	mRNA	TA18395	NC_011100.1	1762991	1769419	D	TA18395	join(<1762991..1764456,1764536..1765446,1765653..1765940,1766244..1767704,1767777..>1769419)	Theileria annulata	3864753
TA18400	mRNA	TA18400	NC_011100.1	1769545	1772119	R	TA18400	complement(join(<1769545..1772022,1772099..>1772119))	Theileria annulata	3864754
TA18405	mRNA	TA18405	NC_011100.1	1773087	1775726	D	TA18405	join(<1773087..1773474,1773655..>1775726)	Theileria annulata	3864755
TA18410	mRNA	TA18410	NC_011100.1	1775986	1779357	D	TA18410	join(<1775986..1776091,1776143..1776255,1776344..1776456,1776641..1776768,1776897..1777211,1777352..>1779357)	Theileria annulata	3864756
TA18415	mRNA	TA18415	NC_011100.1	1779425	1780705	R	TA18415	complement(<1779425..>1780705)	Theileria annulata	3864757
TA18420	mRNA	TA18420	NC_011100.1	1780900	1783551	R	TA18420	complement(join(<1780900..1781071,1781261..1781627,1781806..1782291,1782472..1782744,1782885..>1783551))	Theileria annulata	3864758
TA18425	mRNA	TA18425	NC_011100.1	1783899	1784537	R	TA18425	complement(join(<1783899..1784120,1784172..1784303,1784385..>1784537))	Theileria annulata	3864759
TA18430	mRNA	TA18430	NC_011100.1	1785286	1785561	D	TA18430	join(<1785286..1785389,1785420..>1785561)	Theileria annulata	3864760
TA18435	mRNA	TA18435	NC_011100.1	1786610	1790465	D	TA18435	join(<1786610..1788961,1789077..>1790465)	Theileria annulata	3864761
TA18440	mRNA	TA18440	NC_011100.1	1791099	1799639	D	TA18440	join(<1791099..1792214,1792528..1792640,1792854..1793173,1793211..1793755,1793791..1794379,1794414..1794577,1794717..1795737,1795764..1797214,1797295..1797515,1797554..1798783,1798942..1799168,1799398..1799441,1799523..>1799639)	Theileria annulata	3864762
TA18445	mRNA	TA18445	NC_011100.1	1799743	1800240	R	TA18445	complement(<1799743..>1800240)	Theileria annulata	3864763
TA18450	mRNA	TA18450	NC_011100.1	1801009	1805797	D	TA18450	join(<1801009..1801288,1801319..1801429,1801640..1801864,1802019..1802309,1802498..1802508,1802540..1802821,1802938..1803216,1803371..1803638,1803813..1804070,1804308..1804624,1804656..1804703,1804877..>1805797)	Theileria annulata	3864764
TA18455	mRNA	TA18455	NC_011100.1	1805867	1806763	R	TA18455	complement(<1805867..>1806763)	Theileria annulata	3864765
TA18460	mRNA	TA18460	NC_011100.1	1807042	1811584	R	TA18460	complement(join(<1807042..1807173,1807439..1807827,1807858..1808224,1808389..1808488,1808634..1809125,1809254..1809378,1809666..1809843,1809940..1810175,1810209..1810278,1810356..1810459,1810765..1810944,1811054..1811145,1811238..1811314,1811436..>1811584))	Theileria annulata	3864766
TA18470	mRNA	TA18470	NC_011100.1	1812232	1815774	R	TA18470	complement(join(<1812232..1813243,1813375..1813526,1813649..1813768,1813860..1813942,1814137..1814218,1814309..1814444,1814566..1814682,1814771..1814832,1814863..1814933,1815269..1815336,1815456..1815521,1815573..1815628,1815700..>1815774))	Theileria annulata	3864767
TA18475	mRNA	TA18475	NC_011100.1	1816190	1817455	D	TA18475	join(<1816190..1816427,1816520..1816994,1817027..1817156,1817288..>1817455)	Theileria annulata	3864768
TA17470	mRNA	TA17470	NC_011100.1	1817874	1818325	D	TA17470	join(<1817874..1817927,1818055..1818110,1818148..1818188,1818216..>1818325)	Theileria annulata	3864578
TA17465	mRNA	TA17465	NC_011100.1	1818638	1820200	D	TA17465	join(<1818638..1818983,1819110..1819310,1819530..>1820200)	Theileria annulata	3864577
TA17460	mRNA	TA17460	NC_011100.1	1820577	1822562	D	TA17460	join(<1820577..1820773,1820889..1821272,1821303..1821373,1821404..1821462,1821492..1821560,1821590..1821771,1821802..1821886,1821916..1822303,1822342..>1822562)	Theileria annulata	3864576
TA17455	mRNA	TA17455	NC_011100.1	1822669	1823662	D	TA17455	join(<1822669..1823025,1823058..1823245,1823278..>1823662)	Theileria annulata	3864575
TA17450	mRNA	TA17450	NC_011100.1	1824293	1825882	D	TA17450	<1824293..>1825882	Theileria annulata	3865323
TA17445	mRNA	TA17445	NC_011100.1	1826267	1827931	R	TA17445	complement(<1826267..>1827931)	Theileria annulata	3865322
TA17440	mRNA	TA17440	NC_011100.1	1828066	1828433	R	TA17440	complement(join(<1828066..1828159,1828243..>1828433))	Theileria annulata	3865321
TA17435	mRNA	TA17435	NC_011100.1	1828606	1829509	R	TA17435	complement(join(<1828606..1828724,1828757..1828981,1829012..1829158,1829189..1829254,1829287..>1829509))	Theileria annulata	3865320
TA17430	mRNA	TA17430	NC_011100.1	1829639	1830453	D	TA17430	join(<1829639..1829708,1829753..1829831,1829869..1830021,1830054..1830140,1830171..>1830453)	Theileria annulata	3865319
TA17425	mRNA	TA17425	NC_011100.1	1830502	1832268	R	TA17425	complement(join(<1830502..1830682,1830715..1831603,1831748..1832027,1832224..>1832268))	Theileria annulata	3865318
TA17420	mRNA	TA17420	NC_011100.1	1832348	1833175	D	TA17420	join(<1832348..1832374,1832501..>1833175)	Theileria annulata	3865317
TA17415	mRNA	TA17415	NC_011100.1	1833202	1833910	R	TA17415	complement(join(<1833202..1833445,1833475..1833632,1833675..1833766,1833823..>1833910))	Theileria annulata	3865316
TA17410	mRNA	TA17410	NC_011100.1	1834110	1834670	R	TA17410	complement(<1834110..>1834670)	Theileria annulata	3865315
TA17405	mRNA	TA17405	NC_011100.1	1834921	1836501	R	TA17405	complement(<1834921..>1836501)	Theileria annulata	3865314
TA17400	mRNA	TA17400	NC_011100.1	1837338	1838803	D	TA17400	join(<1837338..1837506,1837536..1837761,1837890..1837961,1838011..1838228,1838258..1838343,1838373..1838471,1838503..1838726,1838743..>1838803)	Theileria annulata	3865313
TA17395	mRNA	TA17395	NC_011100.1	1838822	1839403	R	TA17395	complement(join(<1838822..1838920,1838955..1839123,1839202..1839247,1839280..>1839403))	Theileria annulata	3865312
TA17390	mRNA	TA17390	NC_011100.1	1839666	1840618	R	TA17390	complement(join(<1839666..1839880,1839940..1840045,1840080..1840135,1840164..1840203,1840252..1840434,1840468..1840545,1840583..>1840618))	Theileria annulata	3865311
TA17385	mRNA	TA17385	NC_011100.1	1840809	1841518	R	TA17385	complement(join(<1840809..1841186,1841280..1841389,1841431..>1841518))	Theileria annulata	3865310
TA17380	mRNA	TA17380	NC_011100.1	1842160	1842970	D	TA17380	join(<1842160..1842231,1842316..1842452,1842565..1842798,1842832..>1842970)	Theileria annulata	3865309
TA17375	mRNA	TA17375	NC_011100.1	1843219	1847235	R	TA17375	complement(<1843219..>1847235)	Theileria annulata	3865308
TA17370	mRNA	TA17370	NC_011100.1	1847684	1852228	R	TA17370	complement(<1847684..>1852228)	Theileria annulata	3865307
TA17365	mRNA	TA17365	NC_011100.1	1854137	1858717	R	TA17365	complement(<1854137..>1858717)	Theileria annulata	3865306
TA05590	mRNA	TA05590	NC_011100.1	1860626	1865203	R	TA05590	complement(<1860626..>1865203)	Theileria annulata	3864664
TA05585	mRNA	TA05585	NC_011100.1	1866882	1869221	D	TA05585	<1866882..>1869221	Theileria annulata	3864663
TA05580	mRNA	TA05580	NC_011100.1	1869491	1870594	D	TA05580	<1869491..>1870594	Theileria annulata	3864662
TA05575	mRNA	TA05575	NC_011100.1	1870847	1872247	D	TA05575	<1870847..>1872247	Theileria annulata	3864661
TA05570	mRNA	TA05570	NC_011100.1	1872648	1874264	D	TA05570	<1872648..>1874264	Theileria annulata	3864660
TA05565	mRNA	TA05565	NC_011100.1	1874431	1876143	D	TA05565	<1874431..>1876143	Theileria annulata	3864659
TA05560	mRNA	TA05560	NC_011100.1	1876431	1877759	D	TA05560	<1876431..>1877759	Theileria annulata	3864658
TA05555	mRNA	TA05555	NC_011100.1	1878017	1879282	D	TA05555	<1878017..>1879282	Theileria annulata	3864657
TA05550	mRNA	TA05550	NC_011100.1	1879553	1880842	D	TA05550	<1879553..>1880842	Theileria annulata	3864656
TA05545	mRNA	TA05545	NC_011100.1	1881087	1882382	D	TA05545	<1881087..>1882382	Theileria annulata	3864655
TA05540	mRNA	TA05540	NC_011100.1	1882537	1883940	D	TA05540	<1882537..>1883940	Theileria annulata	3864654
TA05535	mRNA	TA05535	NC_011100.1	1884323	1885306	D	TA05535	<1884323..>1885306	Theileria annulata	3864653
TA05530	mRNA	TA05530	NC_011100.1	1886184	1895141	D	TA05530	<1886184..>1895141	Theileria annulata	3864691
TA05525	mRNA	TA05525	NC_011100.1	1895206	1895538	D	TA05525	<1895206..>1895538	Theileria annulata	3864690
TA17105	mRNA	TA17105	NC_011098.1	2532	5498	R	TA17105	complement(<2532..>5498)	Theileria annulata	3862933
TA17110	mRNA	TA17110	NC_011098.1	6362	8755	R	TA17110	complement(<6362..>8755)	Theileria annulata	3862934
TA17115	mRNA	TA17115	NC_011098.1	9751	24408	R	TA17115	complement(<9751..>24408)	Theileria annulata	3862935
TA17120	mRNA	TA17120	NC_011098.1	24770	27001	R	TA17120	complement(<24770..>27001)	Theileria annulata	3862936
TA17125	mRNA	TA17125	NC_011098.1	27601	28653	R	TA17125	complement(<27601..>28653)	Theileria annulata	3862937
TA17130	mRNA	TA17130	NC_011098.1	28916	30445	R	TA17130	complement(<28916..>30445)	Theileria annulata	3862938
TA17135	mRNA	TA17135	NC_011098.1	30808	31968	R	TA17135	complement(<30808..>31968)	Theileria annulata	3862939
TA17140	mRNA	TA17140	NC_011098.1	32357	33427	R	TA17140	complement(<32357..>33427)	Theileria annulata	3862940
TA17145	mRNA	TA17145	NC_011098.1	34223	36040	R	TA17145	complement(<34223..>36040)	Theileria annulata	3862587
TA17150	mRNA	TA17150	NC_011098.1	37384	41967	D	TA17150	<37384..>41967	Theileria annulata	3862588
TA17160	mRNA	TA17160	NC_011098.1	43937	48520	D	TA17160	<43937..>48520	Theileria annulata	3862589
TA17170	mRNA	TA17170	NC_011098.1	50493	55076	D	TA17170	<50493..>55076	Theileria annulata	3862590
TA17175	mRNA	TA17175	NC_011098.1	55368	58655	R	TA17175	complement(<55368..>58655)	Theileria annulata	3862591
TA17180	mRNA	TA17180	NC_011098.1	58998	61010	R	TA17180	complement(<58998..>61010)	Theileria annulata	3862592
TA17185	mRNA	TA17185	NC_011098.1	61484	62371	R	TA17185	complement(<61484..>62371)	Theileria annulata	3862593
TA17190	mRNA	TA17190	NC_011098.1	62430	63312	R	TA17190	complement(join(<62430..62554,62682..62810,62893..63078,63108..63152,63179..63269,63298..>63312))	Theileria annulata	3862594
TA17195	mRNA	TA17195	NC_011098.1	63554	64941	R	TA17195	complement(join(<63554..63639,63669..63720,63751..63935,63966..64049,64078..64204,64272..64335,64370..64491,64602..64694,64852..>64941))	Theileria annulata	3862595
TA17200	mRNA	TA17200	NC_011098.1	64978	66993	D	TA17200	join(<64978..65232,65274..65394,65455..65551,65585..65654,65762..65832,65890..66045,66081..66136,66203..>66993)	Theileria annulata	3862596
TA17205	mRNA	TA17205	NC_011098.1	67496	70639	R	TA17205	complement(join(<67496..69670,69698..70068,70157..70376,70416..70493,70586..>70639))	Theileria annulata	3862597
TA17210	mRNA	TA17210	NC_011098.1	71518	73245	D	TA17210	<71518..>73245	Theileria annulata	3862598
TA17215	mRNA	TA17215	NC_011098.1	74866	76893	D	TA17215	<74866..>76893	Theileria annulata	3862599
TA17220	mRNA	TA17220	NC_011098.1	77324	78931	D	TA17220	<77324..>78931	Theileria annulata	3862600
TA17225	mRNA	TA17225	NC_011098.1	79079	80773	D	TA17225	join(<79079..79180,79283..79473,79544..79676,79783..80042,80115..80446,80527..80611,80686..>80773)	Theileria annulata	3862601
TA17230	mRNA	TA17230	NC_011098.1	80857	81889	D	TA17230	join(<80857..80967,81006..81094,81236..81350,81432..81571,81601..>81889)	Theileria annulata	3862602
TA17235	mRNA	TA17235	NC_011098.1	81998	83901	R	TA17235	complement(join(<81998..82248,82298..82561,82640..82792,82878..83136,83199..83542,83729..83825,83863..>83901))	Theileria annulata	3862603
TA17240	mRNA	TA17240	NC_011098.1	84263	85431	D	TA17240	join(<84263..84320,84423..84540,84570..84636,84711..84821,84898..85070,85149..85239,85336..>85431)	Theileria annulata	3862604
TA17245	mRNA	TA17245	NC_011098.1	85612	86923	D	TA17245	join(<85612..85676,85779..85909,85977..>86923)	Theileria annulata	3862605
TA17250	mRNA	TA17250	NC_011098.1	87485	88176	D	TA17250	join(<87485..87934,88030..>88176)	Theileria annulata	3863350
TA17255	mRNA	TA17255	NC_011098.1	88253	88648	R	TA17255	complement(join(<88253..88489,88560..88597,88633..>88648))	Theileria annulata	3863351
TA17260	mRNA	TA17260	NC_011098.1	88777	89734	R	TA17260	complement(join(<88777..88842,88878..89054,89140..89269,89332..89438,89473..89570,89623..>89734))	Theileria annulata	3863352
TA17265	mRNA	TA17265	NC_011098.1	89771	92338	R	TA17265	complement(join(<89771..89987,90016..90156,90210..90324,90399..90570,90639..91423,91504..>92338))	Theileria annulata	3863353
TA17270	mRNA	TA17270	NC_011098.1	93638	94627	D	TA17270	join(<93638..93992,94028..94152,94246..94497,94532..>94627)	Theileria annulata	3863354
TA17275	mRNA	TA17275	NC_011098.1	94774	96116	D	TA17275	join(<94774..94805,94953..95148,95182..95275,95358..95428,95564..95625,95691..95985,96018..>96116)	Theileria annulata	3863355
TA17280	mRNA	TA17280	NC_011098.1	96302	97265	D	TA17280	join(<96302..96430,96552..96631,96688..96785,96876..97003,97074..97141,97151..>97265)	Theileria annulata	3863356
TA17285	mRNA	TA17285	NC_011098.1	97790	100762	R	TA17285	complement(<97790..>100762)	Theileria annulata	3863357
TA17290	mRNA	TA17290	NC_011098.1	101126	101902	R	TA17290	complement(<101126..>101902)	Theileria annulata	3863358
TA17295	mRNA	TA17295	NC_011098.1	101952	102562	R	TA17295	complement(join(<101952..102178,102262..>102562))	Theileria annulata	3863359
TA17300	mRNA	TA17300	NC_011098.1	104074	105450	D	TA17300	<104074..>105450	Theileria annulata	3863360
TA17305	mRNA	TA17305	NC_011098.1	105619	106360	D	TA17305	join(<105619..105868,105976..106086,106179..>106360)	Theileria annulata	3863361
TA17310	mRNA	TA17310	NC_011098.1	106409	107174	R	TA17310	complement(join(<106409..106704,106786..106912,107145..>107174))	Theileria annulata	3863362
TA17315	mRNA	TA17315	NC_011098.1	107488	108552	D	TA17315	join(<107488..107992,108049..108149,108214..>108552)	Theileria annulata	3863363
TA17320	mRNA	TA17320	NC_011098.1	108731	109196	D	TA17320	join(<108731..108938,108976..>109196)	Theileria annulata	3863364
TA17325	mRNA	TA17325	NC_011098.1	109767	110369	D	TA17325	<109767..>110369	Theileria annulata	3863365
TA17330	mRNA	TA17330	NC_011098.1	110490	112292	R	TA17330	complement(<110490..>112292)	Theileria annulata	3863366
TA17335	mRNA	TA17335	NC_011098.1	112480	113733	R	TA17335	complement(join(<112480..112679,112712..112920,112958..>113733))	Theileria annulata	3863367
TA17340	mRNA	TA17340	NC_011098.1	114031	114593	D	TA17340	join(<114031..114186,114266..114325,114531..>114593)	Theileria annulata	3863368
TA17345	mRNA	TA17345	NC_011098.1	114883	117857	D	TA17345	join(<114883..115238,115322..116213,116291..116615,116648..117367,117400..>117857)	Theileria annulata	3863369
TA07025	mRNA	TA07025	NC_011098.1	120669	122045	R	TA07025	complement(<120669..>122045)	Theileria annulata	3862606
TA07030	mRNA	TA07030	NC_011098.1	122519	123969	R	TA07030	complement(join(<122519..122887,123046..123175,123261..123380,123433..123547,123603..123681,123773..123904,123952..>123969))	Theileria annulata	3862607
TA07035	mRNA	TA07035	NC_011098.1	124925	125432	R	TA07035	complement(join(<124925..125085,125191..125284,125325..>125432))	Theileria annulata	3862608
TA07040	mRNA	TA07040	NC_011098.1	125779	126592	D	TA07040	join(<125779..126075,126132..126290,126423..126483,126519..>126592)	Theileria annulata	3862609
TA07045	mRNA	TA07045	NC_011098.1	126735	127337	R	TA07045	complement(<126735..>127337)	Theileria annulata	3862610
TA07050	mRNA	TA07050	NC_011098.1	127636	129250	D	TA07050	join(<127636..127691,127725..127899,127982..128154,128187..128228,128353..128695,128883..128908,128946..129070,129183..>129250)	Theileria annulata	3862611
TA07055	mRNA	TA07055	NC_011098.1	129394	130865	D	TA07055	join(<129394..130716,130746..>130865)	Theileria annulata	3862612
TA07060	mRNA	TA07060	NC_011098.1	131196	132692	R	TA07060	complement(join(<131196..131869,131939..>132692))	Theileria annulata	3862613
TA07065	mRNA	TA07065	NC_011098.1	133212	135421	D	TA07065	join(<133212..133656,133688..133875,133928..134261,134344..134648,134759..134842,134946..135198,135279..>135421)	Theileria annulata	3862614
TA07070	mRNA	TA07070	NC_011098.1	135774	137216	D	TA07070	join(<135774..135918,136014..136328,136387..>137216)	Theileria annulata	3862615
TA07125	mRNA	TA07125	NC_011098.1	137284	140559	D	TA07125	join(<137284..137546,137624..137708,137968..138031,138063..138169,138200..138313,138426..138502,138573..138604,138639..138733,138979..139245,139340..139477,139508..139766,139958..>140559)	Theileria annulata	3862664
TA07230	mRNA	TA07230	NC_011098.1	141035	141972	R	TA07230	complement(join(<141035..141321,141503..141715,141804..>141972))	Theileria annulata	3862522
TA07285	mRNA	TA07285	NC_011098.1	142146	143337	R	TA07285	complement(join(<142146..142357,142446..142536,142933..143022,143056..>143337))	Theileria annulata	3862729
TA07290	mRNA	TA07290	NC_011098.1	144703	145074	D	TA07290	<144703..>145074	Theileria annulata	3862730
TA07395	mRNA	TA07395	NC_011098.1	145182	148154	R	TA07395	complement(<145182..>148154)	Theileria annulata	3863086
TA07450	mRNA	TA07450	NC_011098.1	148489	149559	R	TA07450	complement(<148489..>149559)	Theileria annulata	3862743
TA07505	mRNA	TA07505	NC_011098.1	149699	152097	R	TA07505	complement(join(<149699..150604,150806..150888,151003..151140,151201..151305,151337..151397,151581..151681,151735..151996,152044..>152097))	Theileria annulata	3862754
TA07560	mRNA	TA07560	NC_011098.1	152122	154613	R	TA07560	complement(join(<152122..154349,154425..154457,154514..>154613))	Theileria annulata	3862765
TA07565	mRNA	TA07565	NC_011098.1	155425	155735	D	TA07565	join(<155425..155491,155560..>155735)	Theileria annulata	3862766
TA07670	mRNA	TA07670	NC_011098.1	156643	160017	R	TA07670	complement(join(<156643..156823,157181..158304,158610..158845,159083..159769,159915..>160017))	Theileria annulata	3862573
TA07725	mRNA	TA07725	NC_011098.1	160478	160985	R	TA07725	complement(join(<160478..160641,160734..160896,160974..>160985))	Theileria annulata	3862584
TA07780	mRNA	TA07780	NC_011098.1	161059	164745	R	TA07780	complement(<161059..>164745)	Theileria annulata	3862790
TA07785	mRNA	TA07785	NC_011098.1	165158	168658	D	TA07785	<165158..>168658	Theileria annulata	3862791
TA07890	mRNA	TA07890	NC_011098.1	168755	170029	R	TA07890	complement(<168755..>170029)	Theileria annulata	3862952
TA07895	mRNA	TA07895	NC_011098.1	170118	171251	D	TA07895	<170118..>171251	Theileria annulata	3862953
TA08000	mRNA	TA08000	NC_011098.1	171335	172336	R	TA08000	complement(<171335..>172336)	Theileria annulata	3862974
TA08055	mRNA	TA08055	NC_011098.1	173289	177675	R	TA08055	complement(join(<173289..175462,175609..176536,176694..176881,177378..177570,177661..>177675))	Theileria annulata	3862985
TA08060	mRNA	TA08060	NC_011098.1	178352	181827	D	TA08060	join(<178352..178555,178751..179018,179482..180129,180449..180731,181096..181211,181324..181485,181643..>181827)	Theileria annulata	3862986
TA08165	mRNA	TA08165	NC_011098.1	182018	183653	R	TA08165	complement(join(<182018..182313,182603..182812,183127..183202,183235..183306,183409..183494,183587..>183653))	Theileria annulata	3863007
TA08220	mRNA	TA08220	NC_011098.1	185116	185349	R	TA08220	complement(<185116..>185349)	Theileria annulata	3863018
TA08275	mRNA	TA08275	NC_011098.1	186288	186935	R	TA08275	complement(join(<186288..186638,186733..186782,186812..>186935))	Theileria annulata	3863029
TA08280	mRNA	TA08280	NC_011098.1	187093	187884	D	TA08280	join(<187093..187164,187197..187289,187432..187480,187733..>187884)	Theileria annulata	3863030
TA08335	mRNA	TA08335	NC_011098.1	188755	191536	D	TA08335	join(<188755..188816,188963..189080,189652..189859,190091..190403,190748..190978,191170..>191536)	Theileria annulata	3863042
TA08390	mRNA	TA08390	NC_011098.1	192067	192525	D	TA08390	join(<192067..192153,192214..>192525)	Theileria annulata	3863053
TA08495	mRNA	TA08495	NC_011098.1	192884	194401	R	TA08495	complement(join(<192884..193213,193346..>194401))	Theileria annulata	3863074
TA08550	mRNA	TA08550	NC_011098.1	194463	199320	R	TA08550	complement(join(<194463..194918,195106..196639,197155..197679,197832..198043,198649..198791,198915..199038,199143..199214,199249..>199320))	Theileria annulata	3863123
TA08555	mRNA	TA08555	NC_011098.1	199412	201175	D	TA08555	join(<199412..199484,199605..199708,199830..199942,199974..200043,200180..200259,200660..200735,200769..200805,201084..>201175)	Theileria annulata	3863124
TA08609	mRNA	TA08609	NC_011098.1	201320	201996	R	TA08609	complement(join(<201320..201670,201826..>201996))	Theileria annulata	3863154
TA08610	mRNA	TA08610	NC_011098.1	202138	202836	D	TA08610	join(<202138..202312,202655..>202836)	Theileria annulata	3863155
TA08715	mRNA	TA08715	NC_011098.1	203314	204032	R	TA08715	complement(join(<203314..203637,203844..>204032))	Theileria annulata	3863176
TA08720	mRNA	TA08720	NC_011098.1	204849	205016	D	TA08720	<204849..>205016	Theileria annulata	3863177
TA08825	mRNA	TA08825	NC_011098.1	206829	207255	R	TA08825	complement(join(<206829..207055,207096..>207255))	Theileria annulata	3863198
TA08830	mRNA	TA08830	NC_011098.1	207393	207737	D	TA08830	<207393..>207737	Theileria annulata	3863199
TA08885	mRNA	TA08885	NC_011098.1	208437	209748	D	TA08885	join(<208437..208617,208856..>209748)	Theileria annulata	3863209
TA08940	mRNA	TA08940	NC_011098.1	210469	211047	D	TA08940	join(<210469..210495,210559..>211047)	Theileria annulata	3863142
TA08995	mRNA	TA08995	NC_011098.1	211722	212879	D	TA08995	join(<211722..211879,212015..212258,212337..>212879)	Theileria annulata	3863153
TA09050	mRNA	TA09050	NC_011098.1	213514	214101	D	TA09050	<213514..>214101	Theileria annulata	3863223
TA09140	mRNA	TA09140	NC_011098.1	214504	215571	R	TA09140	complement(<214504..>215571)	Theileria annulata	3863240
TA09145	mRNA	TA09145	NC_011098.1	216090	217526	R	TA09145	complement(join(<216090..216551,216957..>217526))	Theileria annulata	3863241
TA09150	mRNA	TA09150	NC_011098.1	217608	218604	D	TA09150	join(<217608..217697,217728..217856,217947..218024,218350..>218604)	Theileria annulata	3863242
TA09155	mRNA	TA09155	NC_011098.1	220111	223196	R	TA09155	complement(join(<220111..220466,220950..221645,222011..>223196))	Theileria annulata	3863243
TA09160	mRNA	TA09160	NC_011098.1	223311	223887	R	TA09160	complement(join(<223311..223466,223600..223636,223742..>223887))	Theileria annulata	3863244
TA09165	mRNA	TA09165	NC_011098.1	223963	225570	R	TA09165	complement(join(<223963..224432,224649..224914,225155..>225570))	Theileria annulata	3863245
TA09170	mRNA	TA09170	NC_011098.1	226198	228009	R	TA09170	complement(<226198..>228009)	Theileria annulata	3863246
TA09175	mRNA	TA09175	NC_011098.1	228145	228627	R	TA09175	complement(join(<228145..228156,228290..228453,228552..>228627))	Theileria annulata	3863247
TA09180	mRNA	TA09180	NC_011098.1	229650	230403	D	TA09180	join(<229650..229711,229896..>230403)	Theileria annulata	3863248
TA09185	mRNA	TA09185	NC_011098.1	230621	233061	D	TA09185	join(<230621..230683,230805..230919,230985..231103,231141..231464,231846..232068,232100..232240,232292..232386,232438..232529,232559..232691,232802..232940,233033..>233061)	Theileria annulata	3863249
TA09190	mRNA	TA09190	NC_011098.1	233208	234781	D	TA09190	join(<233208..233281,233313..233398,233437..233714,233784..233848,233879..233942,234063..234110,234153..234214,234337..234427,234479..>234781)	Theileria annulata	3863250
TA09195	mRNA	TA09195	NC_011098.1	234926	236392	D	TA09195	join(<234926..234999,235029..235114,235146..235423,235527..235591,235621..235684,235805..235852,235880..235941,235972..>236392)	Theileria annulata	3863251
TA09200	mRNA	TA09200	NC_011098.1	236767	238181	D	TA09200	join(<236767..236828,236862..236947,236978..237249,237408..237536,237567..237626,237657..237704,237737..237798,237828..237921,237951..>238181)	Theileria annulata	3863252
TA09205	mRNA	TA09205	NC_011098.1	238393	239903	D	TA09205	join(<238393..238457,238493..238886,238952..239295,239327..239371,239402..239463,239494..239603,239643..>239903)	Theileria annulata	3863253
TA09210	mRNA	TA09210	NC_011098.1	239945	241551	R	TA09210	complement(join(<239945..240627,240701..240946,240978..241116,241148..241182,241214..241323,241364..>241551))	Theileria annulata	3863254
TA09215	mRNA	TA09215	NC_011098.1	241708	243365	D	TA09215	join(<241708..241865,242026..242054,242111..242618,242650..242871,242903..243028,243059..>243365)	Theileria annulata	3863255
TA09220	mRNA	TA09220	NC_011098.1	243398	245143	R	TA09220	complement(join(<243398..243520,243602..243891,243923..244379,244455..244944,245019..>245143))	Theileria annulata	3863256
TA09225	mRNA	TA09225	NC_011098.1	245224	251265	R	TA09225	complement(<245224..>251265)	Theileria annulata	3863257
TA09230	mRNA	TA09230	NC_011098.1	251662	254425	R	TA09230	complement(join(<251662..251809,251882..252370,252402..252527,252576..252663,252695..252802,252849..253011,253044..253157,253193..253274,253310..253472,253502..253611,253641..254082,254221..>254425))	Theileria annulata	3863258
TA09235	mRNA	TA09235	NC_011098.1	254631	254954	R	TA09235	complement(<254631..>254954)	Theileria annulata	3863259
TA09240	mRNA	TA09240	NC_011098.1	255914	256656	D	TA09240	join(<255914..255976,256049..256135,256175..256401,256494..>256656)	Theileria annulata	3863260
TA09245	mRNA	TA09245	NC_011098.1	256834	257307	R	TA09245	complement(<256834..>257307)	Theileria annulata	3863261
TA09250	mRNA	TA09250	NC_011098.1	257769	258899	D	TA09250	<257769..>258899	Theileria annulata	3863262
TA09255	mRNA	TA09255	NC_011098.1	259285	259926	R	TA09255	complement(<259285..>259926)	Theileria annulata	3863263
TA09260	mRNA	TA09260	NC_011098.1	260095	260790	R	TA09260	complement(<260095..>260790)	Theileria annulata	3863264
TA09265	mRNA	TA09265	NC_011098.1	260874	262300	R	TA09265	complement(join(<260874..262181,262259..>262300))	Theileria annulata	3863265
TA09270	mRNA	TA09270	NC_011098.1	262524	263849	D	TA09270	<262524..>263849	Theileria annulata	3863266
TA09275	mRNA	TA09275	NC_011098.1	263789	264979	R	TA09275	complement(<263789..>264979)	Theileria annulata	3863267
TA09280	mRNA	TA09280	NC_011098.1	265065	266660	R	TA09280	complement(<265065..>266660)	Theileria annulata	3863268
TA09285	mRNA	TA09285	NC_011098.1	266715	267610	R	TA09285	complement(join(<266715..267060,267212..267359,267394..>267610))	Theileria annulata	3863269
TA09290	mRNA	TA09290	NC_011098.1	267767	268879	D	TA09290	<267767..>268879	Theileria annulata	3863270
TA09295	mRNA	TA09295	NC_011098.1	268882	271732	R	TA09295	complement(join(<268882..270074,270105..270371,270401..270605,270761..271484,271515..>271732))	Theileria annulata	3863271
TA09300	mRNA	TA09300	NC_011098.1	271886	273546	D	TA09300	join(<271886..271936,271969..272235,272269..272987,273019..273155,273188..>273546)	Theileria annulata	3863272
TA09305	mRNA	TA09305	NC_011098.1	273771	275418	R	TA09305	complement(join(<273771..273859,273924..274245,274866..275080,275115..>275418))	Theileria annulata	3863273
TA09310	mRNA	TA09310	NC_011098.1	275547	278268	R	TA09310	complement(join(<275547..275737,275850..276170,276688..276840,277377..277475,277507..277962,278142..>278268))	Theileria annulata	3863274
TA09315	mRNA	TA09315	NC_011098.1	279206	292942	D	TA09315	<279206..>292942	Theileria annulata	3863275
TA09320	mRNA	TA09320	NC_011098.1	294336	295657	R	TA09320	complement(join(<294336..294703,294871..295017,295052..295108,295191..295218,295253..>295657))	Theileria annulata	3863276
TA09325	mRNA	TA09325	NC_011098.1	295998	297857	D	TA09325	<295998..>297857	Theileria annulata	3863277
TA09330	mRNA	TA09330	NC_011098.1	298311	300791	D	TA09330	join(<298311..300274,300419..>300791)	Theileria annulata	3863278
TA09335	mRNA	TA09335	NC_011098.1	301392	303409	D	TA09335	join(<301392..302130,302318..302471,302696..302802,302834..302973,303110..>303409)	Theileria annulata	3863279
TA09340	mRNA	TA09340	NC_011098.1	303427	306036	R	TA09340	complement(<303427..>306036)	Theileria annulata	3863280
TA09345	mRNA	TA09345	NC_011098.1	306761	307876	R	TA09345	complement(join(<306761..306842,306879..306978,307172..307258,307490..307587,307698..>307876))	Theileria annulata	3863281
TA09350	mRNA	TA09350	NC_011098.1	308003	308523	R	TA09350	complement(join(<308003..308151,308223..308336,308424..>308523))	Theileria annulata	3863282
TA09355	mRNA	TA09355	NC_011098.1	309153	310207	D	TA09355	join(<309153..309287,309719..>310207)	Theileria annulata	3863283
TA09360	mRNA	TA09360	NC_011098.1	311387	313234	D	TA09360	<311387..>313234	Theileria annulata	3863284
TA09365	mRNA	TA09365	NC_011098.1	313974	314570	D	TA09365	<313974..>314570	Theileria annulata	3863285
TA09370	mRNA	TA09370	NC_011098.1	314960	317254	R	TA09370	complement(<314960..>317254)	Theileria annulata	3863286
TA09375	mRNA	TA09375	NC_011098.1	317755	322943	R	TA09375	complement(join(<317755..317922,318185..318263,318404..318628,318861..318944,318978..318993,319325..321034,321416..>322943))	Theileria annulata	3863287
TA09380	mRNA	TA09380	NC_011098.1	323222	324285	D	TA09380	join(<323222..323375,323404..323559,323834..>324285)	Theileria annulata	3863288
TA09385	mRNA	TA09385	NC_011098.1	324406	326428	D	TA09385	join(<324406..324477,324688..324744,324779..324827,324920..325009,325177..325337,325533..325624,325774..325880,326024..326101,326304..>326428)	Theileria annulata	3863289
TA09390	mRNA	TA09390	NC_011098.1	326898	327862	D	TA09390	join(<326898..327050,327098..327557,327660..>327862)	Theileria annulata	3863290
TA09395	mRNA	TA09395	NC_011098.1	328339	329309	R	TA09395	complement(join(<328339..328622,328923..329160,329226..>329309))	Theileria annulata	3863291
TA07075	mRNA	TA07075	NC_011098.1	329937	332002	D	TA07075	join(<329937..330020,330055..330147,330180..330454,330527..330690,330959..331083,331332..331665,331848..>332002)	Theileria annulata	3862654
TA07080	mRNA	TA07080	NC_011098.1	332842	333277	R	TA07080	complement(join(<332842..333023,333115..333208,333239..>333277))	Theileria annulata	3862655
TA07085	mRNA	TA07085	NC_011098.1	334064	334372	R	TA07085	complement(<334064..>334372)	Theileria annulata	3862656
TA07090	mRNA	TA07090	NC_011098.1	335307	338450	R	TA07090	complement(join(<335307..335452,335481..335766,336123..336667,336749..336913,336953..337004,337027..337220,337257..337361,337451..>338450))	Theileria annulata	3862657
TA07095	mRNA	TA07095	NC_011098.1	338952	345274	D	TA07095	join(<338952..339269,339798..340220,340516..340680,340902..341175,341500..341768,342077..342210,342280..342443,342702..342799,342839..343144,343415..343496,343565..343963,344097..344321,344473..344799,345006..>345274)	Theileria annulata	3862658
TA07100	mRNA	TA07100	NC_011098.1	345834	347111	R	TA07100	complement(<345834..>347111)	Theileria annulata	3862659
TA07105	mRNA	TA07105	NC_011098.1	347501	350209	R	TA07105	complement(<347501..>350209)	Theileria annulata	3862660
TA07110	mRNA	TA07110	NC_011098.1	351994	352452	R	TA07110	complement(join(<351994..352190,352245..352326,352357..>352452))	Theileria annulata	3862661
TA07115	mRNA	TA07115	NC_011098.1	352802	353416	D	TA07115	<352802..>353416	Theileria annulata	3862662
TA07120	mRNA	TA07120	NC_011098.1	354355	355935	D	TA07120	join(<354355..355219,355385..>355935)	Theileria annulata	3862663
TA07130	mRNA	TA07130	NC_011098.1	356318	356911	R	TA07130	complement(<356318..>356911)	Theileria annulata	3862665
TA07135	mRNA	TA07135	NC_011098.1	357490	358585	R	TA07135	complement(join(<357490..357912,357944..>358585))	Theileria annulata	3862666
TA07140	mRNA	TA07140	NC_011098.1	360166	365267	R	TA07140	complement(join(<360166..361043,361527..362474,362682..364547,364937..>365267))	Theileria annulata	3862667
TA07145	mRNA	TA07145	NC_011098.1	365769	370153	D	TA07145	join(<365769..365907,366409..366524,366593..366908,367138..367624,368064..368225,368236..368569,368631..368715,368838..368961,369511..369774,369934..>370153)	Theileria annulata	3862668
TA07146	mRNA	TA07146	NC_011098.1	371066	373798	R	TA07146	complement(join(<371066..373194,373489..>373798))	Theileria annulata	3862669
TA07150	mRNA	TA07150	NC_011098.1	374854	380148	R	TA07150	complement(<374854..>380148)	Theileria annulata	3862670
TA07155	mRNA	TA07155	NC_011098.1	380219	380980	R	TA07155	complement(<380219..>380980)	Theileria annulata	3862671
TA07160	mRNA	TA07160	NC_011098.1	381139	382396	D	TA07160	join(<381139..381544,381616..382130,382160..>382396)	Theileria annulata	3862672
TA07162	mRNA	TA07162	NC_011098.1	383759	384425	D	TA07162	join(<383759..383783,383809..>384425)	Theileria annulata	3862508
TA07165	mRNA	TA07165	NC_011098.1	385188	385871	D	TA07165	<385188..>385871	Theileria annulata	3862509
TA07170	mRNA	TA07170	NC_011098.1	386502	387627	D	TA07170	join(<386502..386730,386760..387007,387037..387240,387271..>387627)	Theileria annulata	3862510
TA07175	mRNA	TA07175	NC_011098.1	387695	388881	D	TA07175	join(<387695..387740,387776..387892,387928..388062,388106..>388881)	Theileria annulata	3862511
TA07180	mRNA	TA07180	NC_011098.1	388871	389764	R	TA07180	complement(join(<388871..389062,389096..389143,389174..>389764))	Theileria annulata	3862512
TA07185	mRNA	TA07185	NC_011098.1	389904	392201	R	TA07185	complement(join(<389904..390976,391011..391110,391168..391264,391318..391396,391426..391578,391610..391663,391694..>392201))	Theileria annulata	3862513
TA07190	mRNA	TA07190	NC_011098.1	392641	393637	D	TA07190	join(<392641..392798,392839..392948,392984..393210,393240..393301,393391..393454,393485..>393637)	Theileria annulata	3862514
TA07195	mRNA	TA07195	NC_011098.1	393723	394466	D	TA07195	<393723..>394466	Theileria annulata	3862515
TA07200	mRNA	TA07200	NC_011098.1	394701	395502	R	TA07200	complement(join(<394701..395065,395095..395202,395232..>395502))	Theileria annulata	3862516
TA07205	mRNA	TA07205	NC_011098.1	396644	397390	R	TA07205	complement(join(<396644..396994,397088..>397390))	Theileria annulata	3862517
TA07210	mRNA	TA07210	NC_011098.1	397726	398472	R	TA07210	complement(join(<397726..398036,398067..398177,398226..>398472))	Theileria annulata	3862518
TA07215	mRNA	TA07215	NC_011098.1	398727	400584	R	TA07215	complement(join(<398727..398849,398894..399105,399231..>400584))	Theileria annulata	3862519
TA07220	mRNA	TA07220	NC_011098.1	400862	402736	D	TA07220	<400862..>402736	Theileria annulata	3862520
TA07225	mRNA	TA07225	NC_011098.1	402806	405022	R	TA07225	complement(join(<402806..403185,403249..404339,404396..404705,404740..>405022))	Theileria annulata	3862521
TA07235	mRNA	TA07235	NC_011098.1	405222	405812	R	TA07235	complement(<405222..>405812)	Theileria annulata	3862523
TA07240	mRNA	TA07240	NC_011098.1	406961	412659	R	TA07240	complement(join(<406961..407821,407862..407926,407996..408241,408310..408400,408432..408785,408843..408953,408985..409044,409077..409765,409840..409983,410018..410335,410367..410612,410653..410948,410992..411569,411628..411711,411759..411922,411957..412028,412060..412238,412270..412507,412569..>412659))	Theileria annulata	3862524
TA07245	mRNA	TA07245	NC_011098.1	413274	414645	D	TA07245	join(<413274..413379,413412..413544,413582..413960,413998..414118,414142..414224,414256..>414645)	Theileria annulata	3862525
TA07250	mRNA	TA07250	NC_011098.1	415313	420064	D	TA07250	join(<415313..419039,419103..419343,419406..419850,419909..>420064)	Theileria annulata	3862526
TA07255	mRNA	TA07255	NC_011098.1	420215	422777	R	TA07255	complement(join(<420215..421839,421901..>422777))	Theileria annulata	3862723
TA07260	mRNA	TA07260	NC_011098.1	423278	427264	D	TA07260	<423278..>427264	Theileria annulata	3862724
TA07265	mRNA	TA07265	NC_011098.1	427396	428661	R	TA07265	complement(join(<427396..427547,427600..427698,427757..427868,427901..427953,428022..428147,428221..428373,428442..428537,428616..>428661))	Theileria annulata	3862725
TA07270	mRNA	TA07270	NC_011098.1	429141	433234	D	TA07270	join(<429141..429260,429489..432535,432704..432788,432820..432907,432960..>433234)	Theileria annulata	3862726
TA07275	mRNA	TA07275	NC_011098.1	433435	433885	R	TA07275	complement(join(<433435..433754,433858..>433885))	Theileria annulata	3862727
TA07280	mRNA	TA07280	NC_011098.1	435174	438254	D	TA07280	join(<435174..436077,436196..437563,437647..>438254)	Theileria annulata	3862728
TA07295	mRNA	TA07295	NC_011098.1	438406	440695	R	TA07295	complement(join(<438406..439551,439640..439903,439969..440448,440540..>440695))	Theileria annulata	3862731
TA07300	mRNA	TA07300	NC_011098.1	442216	443417	D	TA07300	join(<442216..442413,442631..442799,442831..>443417)	Theileria annulata	3862732
TA07305	mRNA	TA07305	NC_011098.1	443508	444026	R	TA07305	complement(<443508..>444026)	Theileria annulata	3862733
TA07310	mRNA	TA07310	NC_011098.1	444153	445469	R	TA07310	complement(<444153..>445469)	Theileria annulata	3862734
TA07315	mRNA	TA07315	NC_011098.1	446040	447911	D	TA07315	join(<446040..446179,446273..>447911)	Theileria annulata	3862735
TA07320	mRNA	TA07320	NC_011098.1	447952	448520	R	TA07320	complement(join(<447952..448259,448327..448445,448489..>448520))	Theileria annulata	3862736
TA07325	mRNA	TA07325	NC_011098.1	448688	451006	R	TA07325	complement(<448688..>451006)	Theileria annulata	3862737
TA07330	mRNA	TA07330	NC_011098.1	451349	456445	D	TA07330	join(<451349..454505,454548..>456445)	Theileria annulata	3862738
TA07335	mRNA	TA07335	NC_011098.1	456557	456955	D	TA07335	<456557..>456955	Theileria annulata	3862739
TA07340	mRNA	TA07340	NC_011098.1	457240	460431	D	TA07340	join(<457240..457524,457622..457952,457984..458117,458170..458441,458472..458521,458587..459096,459155..459651,459715..>460431)	Theileria annulata	3862740
TA07345	mRNA	TA07345	NC_011098.1	460715	462233	D	TA07345	join(<460715..461413,461452..461785,461815..461942,462007..462085,462118..>462233)	Theileria annulata	3862741
TA07350	mRNA	TA07350	NC_011098.1	462484	463828	D	TA07350	join(<462484..462622,462666..462958,463060..463342,463434..>463828)	Theileria annulata	3862742
TA07355	mRNA	TA07355	NC_011098.1	463902	467908	R	TA07355	complement(join(<463902..464959,464992..465439,465502..465810,465882..466218,466289..466747,466799..466948,467004..467435,467492..467604,467638..467717,467749..>467908))	Theileria annulata	3863078
TA07360	mRNA	TA07360	NC_011098.1	468355	471149	D	TA07360	join(<468355..469102,469157..470007,470037..470122,470161..470224,470256..>471149)	Theileria annulata	3863079
TA07365	mRNA	TA07365	NC_011098.1	471329	472336	D	TA07365	<471329..>472336	Theileria annulata	3863080
TA07370	mRNA	TA07370	NC_011098.1	472628	473680	D	TA07370	<472628..>473680	Theileria annulata	3863081
TA07375	mRNA	TA07375	NC_011098.1	473752	474737	R	TA07375	complement(join(<473752..473851,473882..473994,474023..474125,474167..474311,474344..474431,474594..>474737))	Theileria annulata	3863082
TA07380	mRNA	TA07380	NC_011098.1	474892	476154	D	TA07380	join(<474892..475161,475251..475382,475491..475587,475620..475702,475746..475868,475963..>476154)	Theileria annulata	3863083
TA07385	mRNA	TA07385	NC_011098.1	476223	476892	R	TA07385	complement(join(<476223..476464,476571..476648,476686..476793,476826..>476892))	Theileria annulata	3863084
TA07390	mRNA	TA07390	NC_011098.1	477059	477439	R	TA07390	complement(join(<477059..477357,477391..>477439))	Theileria annulata	3863085
TA07400	mRNA	TA07400	NC_011098.1	477784	479620	R	TA07400	complement(join(<477784..477929,478097..478202,478356..478529,478679..478834,478912..479124,479176..479335,479415..>479620))	Theileria annulata	3863087
TA07405	mRNA	TA07405	NC_011098.1	480145	481189	D	TA07405	join(<480145..480249,480295..480889,480957..>481189)	Theileria annulata	3863088
TA07410	mRNA	TA07410	NC_011098.1	481335	484926	R	TA07410	complement(join(<481335..481497,481592..>484926))	Theileria annulata	3863089
TA07415	mRNA	TA07415	NC_011098.1	486228	487453	D	TA07415	join(<486228..486409,486443..486540,486572..487185,487253..>487453)	Theileria annulata	3863090
TA07420	mRNA	TA07420	NC_011098.1	487565	488319	R	TA07420	complement(join(<487565..487711,487743..487824,487890..488127,488157..>488319))	Theileria annulata	3863091
TA07425	mRNA	TA07425	NC_011098.1	489175	490732	R	TA07425	complement(join(<489175..489444,489555..490137,490210..490578,490638..>490732))	Theileria annulata	3863092
TA07430	mRNA	TA07430	NC_011098.1	491747	494563	D	TA07430	<491747..>494563	Theileria annulata	3863093
TA07435	mRNA	TA07435	NC_011098.1	494745	496334	R	TA07435	complement(<494745..>496334)	Theileria annulata	3863094
TA07440	mRNA	TA07440	NC_011098.1	496513	498874	R	TA07440	complement(join(<496513..496632,496733..496891,496978..497194,497275..497503,497643..497818,497879..497956,497988..498092,498153..498241,498300..498461,498494..498659,498727..498800,498842..>498874))	Theileria annulata	3863095
TA07445	mRNA	TA07445	NC_011098.1	499269	501458	D	TA07445	join(<499269..500306,500454..500518,500585..500661,500737..500877,500962..501093,501151..>501458)	Theileria annulata	3863096
TA07455	mRNA	TA07455	NC_011098.1	501738	502272	D	TA07455	join(<501738..501983,502088..502152,502188..>502272)	Theileria annulata	3862744
TA07460	mRNA	TA07460	NC_011098.1	502445	504584	D	TA07460	join(<502445..503408,503473..503742,503807..504189,504297..>504584)	Theileria annulata	3862745
TA07465	mRNA	TA07465	NC_011098.1	504755	506362	R	TA07465	complement(join(<504755..504931,504974..505147,505236..505906,506026..>506362))	Theileria annulata	3862746
TA07470	mRNA	TA07470	NC_011098.1	506602	507555	D	TA07470	join(<506602..506621,506666..506712,506805..506991,507045..>507555)	Theileria annulata	3862747
TA07475	mRNA	TA07475	NC_011098.1	507626	509578	R	TA07475	complement(<507626..>509578)	Theileria annulata	3862748
TA07480	mRNA	TA07480	NC_011098.1	509924	511396	R	TA07480	complement(<509924..>511396)	Theileria annulata	3862749
TA07485	mRNA	TA07485	NC_011098.1	512301	513197	D	TA07485	join(<512301..512387,512417..512508,512538..512599,512672..512778,512864..512937,513020..>513197)	Theileria annulata	3862750
TA07490	mRNA	TA07490	NC_011098.1	513327	514998	R	TA07490	complement(join(<513327..513470,513538..>514998))	Theileria annulata	3862751
TA07495	mRNA	TA07495	NC_011098.1	515064	516530	R	TA07495	complement(join(<515064..516291,516442..>516530))	Theileria annulata	3862752
TA07500	mRNA	TA07500	NC_011098.1	518510	521273	R	TA07500	complement(join(<518510..518641,518672..518770,518890..518988,519018..521054,521148..>521273))	Theileria annulata	3862753
TA07510	mRNA	TA07510	NC_011098.1	522173	523211	R	TA07510	complement(join(<522173..522215,522245..522322,522398..522616,522717..522799,522829..522923,522956..523048,523127..>523211))	Theileria annulata	3862755
TA07515	mRNA	TA07515	NC_011098.1	524461	527077	D	TA07515	join(<524461..524515,524545..524605,524701..>527077)	Theileria annulata	3862756
TA07520	mRNA	TA07520	NC_011098.1	527851	529867	R	TA07520	complement(join(<527851..529011,529103..529180,529286..529664,529710..>529867))	Theileria annulata	3862757
TA07525	mRNA	TA07525	NC_011098.1	530238	533009	D	TA07525	join(<530238..530435,530470..530595,530664..531060,531090..531256,531297..531476,531505..531593,531626..531742,531803..531922,531971..532175,532235..532536,532609..532796,532825..>533009)	Theileria annulata	3862758
TA07530	mRNA	TA07530	NC_011098.1	533602	534009	D	TA07530	<533602..>534009	Theileria annulata	3862759
TA07535	mRNA	TA07535	NC_011098.1	534059	535287	R	TA07535	complement(join(<534059..534194,534251..534393,534424..534627,534664..534740,534773..534936,534998..535191,535225..>535287))	Theileria annulata	3862760
TA07540	mRNA	TA07540	NC_011098.1	536058	539015	D	TA07540	join(<536058..536091,536130..536381,536474..537379,537581..537696,537733..537880,537952..538049,538125..538262,538350..538474,538516..538807,538899..>539015)	Theileria annulata	3862761
TA07545	mRNA	TA07545	NC_011098.1	539060	539959	R	TA07545	complement(join(<539060..539130,539160..539268,539328..539864,539903..>539959))	Theileria annulata	3862762
TA07550	mRNA	TA07550	NC_011098.1	540305	541930	R	TA07550	complement(<540305..>541930)	Theileria annulata	3862763
TA07555	mRNA	TA07555	NC_011098.1	542934	543796	R	TA07555	complement(join(<542934..543697,543727..>543796))	Theileria annulata	3862764
TA07570	mRNA	TA07570	NC_011098.1	544117	545995	D	TA07570	join(<544117..544266,544360..544487,544517..544581,544615..544722,544752..544999,545062..545295,545326..545443,545490..>545995)	Theileria annulata	3862767
TA07575	mRNA	TA07575	NC_011098.1	546109	547173	R	TA07575	complement(<546109..>547173)	Theileria annulata	3862768
TA07580	mRNA	TA07580	NC_011098.1	547914	548168	R	TA07580	complement(<547914..>548168)	Theileria annulata	3862769
TA07585	mRNA	TA07585	NC_011098.1	548490	557220	R	TA07585	complement(join(<548490..549118,549157..555937,555971..556237,556269..556874,556906..>557220))	Theileria annulata	3862770
TA07590	mRNA	TA07590	NC_011098.1	558238	558762	R	TA07590	complement(join(<558238..558343,558374..558551,558591..>558762))	Theileria annulata	3862771
TA07595	mRNA	TA07595	NC_011098.1	559420	561010	D	TA07595	join(<559420..560277,560308..560443,560477..560559,560588..560688,560718..560790,560819..>561010)	Theileria annulata	3862772
TA07600	mRNA	TA07600	NC_011098.1	561007	561831	R	TA07600	complement(<561007..>561831)	Theileria annulata	3862773
TA07605	mRNA	TA07605	NC_011098.1	561910	564042	R	TA07605	complement(join(<561910..562041,562070..562162,562194..562352,562387..562458,562491..562769,562806..563001,563032..563663,563749..>564042))	Theileria annulata	3862774
TA07610	mRNA	TA07610	NC_011098.1	564081	565640	R	TA07610	complement(join(<564081..564242,564273..>565640))	Theileria annulata	3862775
TA07615	mRNA	TA07615	NC_011098.1	565894	567344	R	TA07615	complement(join(<565894..566078,566112..566200,566405..566496,566526..566594,566626..566772,566804..566861,566898..567004,567037..567109,567151..>567344))	Theileria annulata	3862776
TA07620	mRNA	TA07620	NC_011098.1	567501	568033	R	TA07620	complement(join(<567501..567961,567997..>568033))	Theileria annulata	3862777
TA07625	mRNA	TA07625	NC_011098.1	568123	568326	R	TA07625	complement(<568123..>568326)	Theileria annulata	3862778
TA07630	mRNA	TA07630	NC_011098.1	568405	569605	R	TA07630	complement(join(<568405..568668,568700..568822,568856..568954,569105..569254,569290..569420,569452..>569605))	Theileria annulata	3862779
TA07635	mRNA	TA07635	NC_011098.1	570101	571682	R	TA07635	complement(join(<570101..570445,570476..570575,570607..570670,570700..570934,570967..571131,571162..571244,571277..>571682))	Theileria annulata	3862780
TA07639	mRNA	TA07639	NC_011098.1	571820	573699	R	TA07639	complement(join(<571820..571957,571998..572210,572326..572448,572481..572638,572672..572936,572971..573036,573070..573186,573217..573259,573387..573575,573609..573673,573697..>573699))	Theileria annulata	3862781
TA07640	mRNA	TA07640	NC_011098.1	573891	575588	R	TA07640	complement(join(<573891..574016,574052..574147,574180..574262,574296..574357,574389..574501,574536..574628,574658..574723,574755..>575588))	Theileria annulata	3862567
TA07645	mRNA	TA07645	NC_011098.1	575996	579620	D	TA07645	join(<575996..576309,576341..>579620)	Theileria annulata	3862568
TA07650	mRNA	TA07650	NC_011098.1	580336	581512	D	TA07650	join(<580336..580477,580588..581009,581081..>581512)	Theileria annulata	3862569
TA07655	mRNA	TA07655	NC_011098.1	581636	582750	D	TA07655	join(<581636..581770,581811..581941,581970..582069,582100..582234,582264..582419,582452..582538,582568..>582750)	Theileria annulata	3862570
TA07660	mRNA	TA07660	NC_011098.1	582887	584299	D	TA07660	join(<582887..583194,583287..583458,583488..583760,583814..584041,584084..>584299)	Theileria annulata	3862571
TA07665	mRNA	TA07665	NC_011098.1	584388	585119	R	TA07665	complement(<584388..>585119)	Theileria annulata	3862572
TA07675	mRNA	TA07675	NC_011098.1	586221	587770	D	TA07675	join(<586221..586482,586514..586602,586664..586804,586948..587055,587138..587278,587339..587595,587674..>587770)	Theileria annulata	3862574
TA07680	mRNA	TA07680	NC_011098.1	587818	589011	R	TA07680	complement(join(<587818..587939,587989..588129,588183..>589011))	Theileria annulata	3862575
TA07685	mRNA	TA07685	NC_011098.1	589218	590396	R	TA07685	complement(<589218..>590396)	Theileria annulata	3862576
TA07690	mRNA	TA07690	NC_011098.1	590702	593278	D	TA07690	join(<590702..590749,590857..591591,591650..592187,592257..>593278)	Theileria annulata	3862577
TA07695	mRNA	TA07695	NC_011098.1	594309	597080	D	TA07695	<594309..>597080	Theileria annulata	3862578
TA07700	mRNA	TA07700	NC_011098.1	597324	597721	D	TA07700	join(<597324..597444,597538..597600,597633..>597721)	Theileria annulata	3862579
TA07705	mRNA	TA07705	NC_011098.1	597762	598322	R	TA07705	complement(<597762..>598322)	Theileria annulata	3862580
TA07710	mRNA	TA07710	NC_011098.1	598439	599441	R	TA07710	complement(join(<598439..598597,598669..598733,598793..598910,598976..599065,599113..599220,599286..>599441))	Theileria annulata	3862581
TA07715	mRNA	TA07715	NC_011098.1	600112	601521	D	TA07715	<600112..>601521	Theileria annulata	3862582
TA07720	mRNA	TA07720	NC_011098.1	601769	603265	D	TA07720	<601769..>603265	Theileria annulata	3862583
TA07730	mRNA	TA07730	NC_011098.1	603409	605280	D	TA07730	<603409..>605280	Theileria annulata	3862585
TA07735	mRNA	TA07735	NC_011098.1	606476	607849	R	TA07735	complement(join(<606476..606732,606797..606955,607045..>607849))	Theileria annulata	3862586
TA07740	mRNA	TA07740	NC_011098.1	608077	608776	D	TA07740	join(<608077..608209,608346..608452,608513..608625,608674..>608776)	Theileria annulata	3862782
TA07745	mRNA	TA07745	NC_011098.1	608817	609234	R	TA07745	complement(join(<608817..608954,609017..609134,609152..>609234))	Theileria annulata	3862783
TA07750	mRNA	TA07750	NC_011098.1	609950	613075	D	TA07750	join(<609950..610013,610212..612581,612643..612723,612796..612865,612949..>613075)	Theileria annulata	3862784
TA07755	mRNA	TA07755	NC_011098.1	613612	615928	D	TA07755	join(<613612..614182,614501..615508,615623..615730,615795..>615928)	Theileria annulata	3862785
TA07760	mRNA	TA07760	NC_011098.1	615976	617045	D	TA07760	join(<615976..616314,616356..616592,616656..>617045)	Theileria annulata	3862786
TA07765	mRNA	TA07765	NC_011098.1	617134	619386	R	TA07765	complement(<617134..>619386)	Theileria annulata	3862787
TA07770	mRNA	TA07770	NC_011098.1	619556	621646	R	TA07770	complement(<619556..>621646)	Theileria annulata	3862788
TA07775	mRNA	TA07775	NC_011098.1	621817	622391	R	TA07775	complement(join(<621817..621915,621984..622201,622256..>622391))	Theileria annulata	3862789
TA07790	mRNA	TA07790	NC_011098.1	622715	623438	R	TA07790	complement(join(<622715..623064,623135..623288,623376..>623438))	Theileria annulata	3862792
TA07795	mRNA	TA07795	NC_011098.1	623694	625303	R	TA07795	complement(join(<623694..623813,623957..>625303))	Theileria annulata	3862793
TA07800	mRNA	TA07800	NC_011098.1	625548	629563	R	TA07800	complement(join(<625548..625937,626001..626244,626357..626707,626776..626980,627061..627322,627384..627600,627669..627941,628006..628223,628280..628471,628555..628731,628762..628902,628973..629124,629169..629257,629394..>629563))	Theileria annulata	3862794
TA07805	mRNA	TA07805	NC_011098.1	630154	631179	D	TA07805	join(<630154..630471,630599..630779,630869..>631179)	Theileria annulata	3862795
TA07810	mRNA	TA07810	NC_011098.1	631355	632071	D	TA07810	<631355..>632071	Theileria annulata	3862796
TA07815	mRNA	TA07815	NC_011098.1	632204	633114	R	TA07815	complement(join(<632204..632329,632362..632468,632546..632687,632764..632833,632925..633032,633068..>633114))	Theileria annulata	3862797
TA07820	mRNA	TA07820	NC_011098.1	633399	634880	R	TA07820	complement(<633399..>634880)	Theileria annulata	3862798
TA07825	mRNA	TA07825	NC_011098.1	636741	637481	D	TA07825	join(<636741..636813,636896..637054,637143..637222,637293..>637481)	Theileria annulata	3862799
TA07830	mRNA	TA07830	NC_011098.1	637557	639357	R	TA07830	complement(join(<637557..638687,638754..638906,638971..>639357))	Theileria annulata	3862800
TA07835	mRNA	TA07835	NC_011098.1	640379	640821	D	TA07835	join(<640379..640491,640557..>640821)	Theileria annulata	3862941
TA07840	mRNA	TA07840	NC_011098.1	641086	641496	R	TA07840	complement(<641086..>641496)	Theileria annulata	3862942
TA07845	mRNA	TA07845	NC_011098.1	642630	643013	D	TA07845	<642630..>643013	Theileria annulata	3862943
TA07850	mRNA	TA07850	NC_011098.1	643569	646734	D	TA07850	join(<643569..643696,643744..644179,644265..644989,645023..645426,645530..645709,645773..645968,646046..646250,646328..646467,646500..>646734)	Theileria annulata	3862944
TA07855	mRNA	TA07855	NC_011098.1	647000	648372	D	TA07855	join(<647000..647407,647445..647526,647583..647704,647747..647870,647939..648112,648144..648189,648246..>648372)	Theileria annulata	3862945
TA07860	mRNA	TA07860	NC_011098.1	648406	649810	R	TA07860	complement(join(<648406..648544,648615..648838,648884..649118,649188..649578,649636..>649810))	Theileria annulata	3862946
TA07865	mRNA	TA07865	NC_011098.1	650571	651659	D	TA07865	join(<650571..650667,650699..650826,650922..651184,651238..651393,651443..>651659)	Theileria annulata	3862947
TA07870	mRNA	TA07870	NC_011098.1	652132	656167	R	TA07870	complement(join(<652132..652448,652520..653135,653220..653295,653364..653672,653742..>656167))	Theileria annulata	3862948
TA07875	mRNA	TA07875	NC_011098.1	656620	658380	D	TA07875	join(<656620..656745,656775..656862,656904..657067,657138..657575,657635..657835,657876..658003,658037..658224,658253..>658380)	Theileria annulata	3862949
TA07880	mRNA	TA07880	NC_011098.1	658470	660864	R	TA07880	complement(join(<658470..658907,658937..658981,659009..659170,659473..>660864))	Theileria annulata	3862950
TA07885	mRNA	TA07885	NC_011098.1	660975	663005	R	TA07885	complement(join(<660975..661132,661331..661379,661475..661795,661858..662001,662033..662109,662139..662271,662325..662660,662700..662845,662879..>663005))	Theileria annulata	3862951
TA07900	mRNA	TA07900	NC_011098.1	663340	667300	D	TA07900	join(<663340..663511,663546..663785,663817..664042,664086..664359,664390..664584,664617..664767,664798..666600,666676..666965,666995..>667300)	Theileria annulata	3862954
TA07905	mRNA	TA07905	NC_011098.1	667450	669164	D	TA07905	join(<667450..667669,667699..667898,667951..668159,668189..668825,668858..669006,669035..>669164)	Theileria annulata	3862955
TA07910	mRNA	TA07910	NC_011098.1	669641	671755	R	TA07910	complement(join(<669641..669780,669810..669888,669918..670006,670036..670138,670185..670302,670344..670483,670513..670931,670974..671176,671206..671441,671471..>671755))	Theileria annulata	3862956
TA07915	mRNA	TA07915	NC_011098.1	672308	673175	D	TA07915	join(<672308..672386,672425..672639,672669..672761,672800..672876,672906..673012,673042..>673175)	Theileria annulata	3862957
TA07920	mRNA	TA07920	NC_011098.1	673211	675033	R	TA07920	complement(join(<673211..674631,674664..>675033))	Theileria annulata	3862958
TA07925	mRNA	TA07925	NC_011098.1	675544	679792	R	TA07925	complement(join(<675544..675974,676017..676154,676217..676672,676726..676872,676904..677395,677435..677818,677854..677970,678000..678446,678505..678708,678773..679320,679353..679464,679560..679694,679732..>679792))	Theileria annulata	3862959
TA07930	mRNA	TA07930	NC_011098.1	680052	680765	D	TA07930	<680052..>680765	Theileria annulata	3862960
TA07935	mRNA	TA07935	NC_011098.1	681002	682159	D	TA07935	join(<681002..681036,681099..681202,681237..681417,681450..681567,681598..681676,681783..681947,682002..>682159)	Theileria annulata	3862961
TA07940	mRNA	TA07940	NC_011098.1	682685	684391	D	TA07940	<682685..>684391	Theileria annulata	3862962
TA07945	mRNA	TA07945	NC_011098.1	684699	688886	D	TA07945	join(<684699..688325,688584..>688886)	Theileria annulata	3862963
TA07950	mRNA	TA07950	NC_011098.1	689085	691131	D	TA07950	join(<689085..689178,689209..689497,689552..689704,689760..689922,689966..690061,690093..690403,690434..690690,690722..>691131)	Theileria annulata	3862964
TA07955	mRNA	TA07955	NC_011098.1	691184	691957	R	TA07955	complement(<691184..>691957)	Theileria annulata	3862965
TA07960	mRNA	TA07960	NC_011098.1	692349	692819	D	TA07960	join(<692349..692495,692643..>692819)	Theileria annulata	3862966
TA07965	mRNA	TA07965	NC_011098.1	692994	695128	R	TA07965	complement(join(<692994..693259,693348..693504,693547..693912,693947..694087,694131..694496,694529..694878,694919..694957,695002..>695128))	Theileria annulata	3862967
TA07970	mRNA	TA07970	NC_011098.1	695515	696518	D	TA07970	join(<695515..695751,695800..695949,695978..696032,696157..>696518)	Theileria annulata	3862968
TA07975	mRNA	TA07975	NC_011098.1	696663	697391	R	TA07975	complement(join(<696663..696923,697009..697160,697211..697249,697319..>697391))	Theileria annulata	3862969
TA07980	mRNA	TA07980	NC_011098.1	697605	698530	D	TA07980	join(<697605..697700,697733..697924,697968..698060,698093..698191,698265..698377,698410..>698530)	Theileria annulata	3862970
TA07985	mRNA	TA07985	NC_011098.1	698660	701659	R	TA07985	complement(<698660..>701659)	Theileria annulata	3862971
TA07990	mRNA	TA07990	NC_011098.1	702210	703643	R	TA07990	complement(<702210..>703643)	Theileria annulata	3862972
TA07995	mRNA	TA07995	NC_011098.1	703933	709275	D	TA07995	<703933..>709275	Theileria annulata	3862973
TA08005	mRNA	TA08005	NC_011098.1	709370	710404	D	TA08005	<709370..>710404	Theileria annulata	3862975
TA08010	mRNA	TA08010	NC_011098.1	710519	712844	D	TA08010	join(<710519..711835,711880..712369,712431..712727,712759..>712844)	Theileria annulata	3862976
TA08015	mRNA	TA08015	NC_011098.1	712905	714224	R	TA08015	complement(join(<712905..713564,713628..>714224))	Theileria annulata	3862977
TA08020	mRNA	TA08020	NC_011098.1	715510	715982	D	TA08020	join(<715510..715605,715690..715770,715803..>715982)	Theileria annulata	3862978
TA08025	mRNA	TA08025	NC_011098.1	716381	719548	D	TA08025	<716381..>719548	Theileria annulata	3862979
TA08030	mRNA	TA08030	NC_011098.1	719763	721282	D	TA08030	join(<719763..719891,719961..720081,720145..720233,720263..720718,720750..720824,720857..>721282)	Theileria annulata	3862980
TA08035	mRNA	TA08035	NC_011098.1	721322	722685	R	TA08035	complement(join(<721322..721471,721501..721611,721656..722000,722033..722147,722219..722349,722386..722535,722572..>722685))	Theileria annulata	3862981
TA08040	mRNA	TA08040	NC_011098.1	722878	724593	D	TA08040	<722878..>724593	Theileria annulata	3862982
TA08045	mRNA	TA08045	NC_011098.1	725155	728819	D	TA08045	join(<725155..725709,725803..726571,726655..727131,727249..>728819)	Theileria annulata	3862983
TA08050	mRNA	TA08050	NC_011098.1	729003	732656	R	TA08050	complement(join(<729003..729167,729197..729259,729290..729391,729457..729780,729838..730169,730210..730486,730538..730813,730879..731037,731078..731200,731268..>732656))	Theileria annulata	3862984
TA08065	mRNA	TA08065	NC_011098.1	732830	735201	R	TA08065	complement(join(<732830..733413,733467..>735201))	Theileria annulata	3862987
TA08070	mRNA	TA08070	NC_011098.1	735486	736596	D	TA08070	join(<735486..735561,735595..735707,735770..735851,735948..736103,736161..736243,736276..>736596)	Theileria annulata	3862988
TA08075	mRNA	TA08075	NC_011098.1	736703	738126	R	TA08075	complement(join(<736703..736878,736909..737044,737076..737214,737244..737402,737440..737529,737564..737631,737686..>738126))	Theileria annulata	3862989
TA08080	mRNA	TA08080	NC_011098.1	738327	739484	R	TA08080	complement(join(<738327..738694,738775..738987,739037..739100,739131..>739484))	Theileria annulata	3862990
TA08085	mRNA	TA08085	NC_011098.1	739953	742798	D	TA08085	join(<739953..740165,740198..>742798)	Theileria annulata	3862991
TA08090	mRNA	TA08090	NC_011098.1	743525	748699	D	TA08090	<743525..>748699	Theileria annulata	3862992
TA08095	mRNA	TA08095	NC_011098.1	748873	749559	D	TA08095	join(<748873..748959,748991..749263,749338..>749559)	Theileria annulata	3862993
TA08100	mRNA	TA08100	NC_011098.1	749645	751441	R	TA08100	complement(<749645..>751441)	Theileria annulata	3862994
TA08105	mRNA	TA08105	NC_011098.1	752049	753874	D	TA08105	join(<752049..752642,752731..753723,753773..>753874)	Theileria annulata	3862995
TA08110	mRNA	TA08110	NC_011098.1	754005	755393	R	TA08110	complement(join(<754005..754406,754460..754566,754622..754679,754708..754833,754911..754964,754995..>755393))	Theileria annulata	3862996
TA08115	mRNA	TA08115	NC_011098.1	755616	756536	D	TA08115	<755616..>756536	Theileria annulata	3862997
TA08120	mRNA	TA08120	NC_011098.1	756673	761808	R	TA08120	complement(join(<756673..756831,756862..756947,757030..757202,757270..757419,757484..757629,757688..757983,758053..758140,758173..>761808))	Theileria annulata	3862998
TA08125	mRNA	TA08125	NC_011098.1	762653	763268	D	TA08125	join(<762653..762709,762745..762959,762992..>763268)	Theileria annulata	3862999
TA08130	mRNA	TA08130	NC_011098.1	763295	764414	R	TA08130	complement(join(<763295..764190,764267..>764414))	Theileria annulata	3863000
TA08135	mRNA	TA08135	NC_011098.1	764749	766227	D	TA08135	join(<764749..764782,764848..765008,765058..765159,765187..>766227)	Theileria annulata	3863001
TA08140	mRNA	TA08140	NC_011098.1	766278	767561	D	TA08140	<766278..>767561	Theileria annulata	3863002
TA08145	mRNA	TA08145	NC_011098.1	767680	768699	R	TA08145	complement(<767680..>768699)	Theileria annulata	3863003
TA08150	mRNA	TA08150	NC_011098.1	769309	770610	R	TA08150	complement(join(<769309..770424,770536..>770610))	Theileria annulata	3863004
TA08155	mRNA	TA08155	NC_011098.1	771304	772089	D	TA08155	<771304..>772089	Theileria annulata	3863005
TA08160	mRNA	TA08160	NC_011098.1	772163	773392	R	TA08160	complement(join(<772163..772357,772417..772494,772528..772683,772758..773155,773254..>773392))	Theileria annulata	3863006
TA08170	mRNA	TA08170	NC_011098.1	773585	774283	R	TA08170	complement(join(<773585..773761,773833..774110,774175..>774283))	Theileria annulata	3863008
TA08175	mRNA	TA08175	NC_011098.1	774937	778796	D	TA08175	join(<774937..777045,777108..777259,777312..778188,778310..778620,778661..>778796)	Theileria annulata	3863009
TA08180	mRNA	TA08180	NC_011098.1	778843	781210	R	TA08180	complement(join(<778843..779014,779107..779536,779616..779786,779825..780439,780507..780598,780662..780929,781019..781148,781190..>781210))	Theileria annulata	3863010
TA08185	mRNA	TA08185	NC_011098.1	781527	782290	R	TA08185	complement(join(<781527..781678,781741..781827,781970..781985,782018..>782290))	Theileria annulata	3863011
TA08190	mRNA	TA08190	NC_011098.1	782664	783197	D	TA08190	<782664..>783197	Theileria annulata	3863012
TA08195	mRNA	TA08195	NC_011098.1	783228	783599	D	TA08195	<783228..>783599	Theileria annulata	3863013
TA08200	mRNA	TA08200	NC_011098.1	783737	784556	R	TA08200	complement(join(<783737..784166,784249..>784556))	Theileria annulata	3863014
TA08205	mRNA	TA08205	NC_011098.1	784928	785488	R	TA08205	complement(join(<784928..785047,785156..785287,785372..>785488))	Theileria annulata	3863015
TA08210	mRNA	TA08210	NC_011098.1	786163	787855	D	TA08210	join(<786163..786266,786364..786446,786511..786716,786787..787072,787101..787195,787264..787604,787693..>787855)	Theileria annulata	3863016
TA08215	mRNA	TA08215	NC_011098.1	788013	789495	R	TA08215	complement(join(<788013..788559,788631..788794,788834..789127,789196..>789495))	Theileria annulata	3863017
TA08225	mRNA	TA08225	NC_011098.1	789871	790881	R	TA08225	complement(join(<789871..789992,790103..790356,790436..>790881))	Theileria annulata	3863019
TA08230	mRNA	TA08230	NC_011098.1	791470	795802	R	TA08230	complement(join(<791470..792307,792393..795360,795408..795480,795566..795646,795749..>795802))	Theileria annulata	3863020
TA08235	mRNA	TA08235	NC_011098.1	795996	797474	R	TA08235	complement(join(<795996..796059,796134..796539,796608..797257,797434..>797474))	Theileria annulata	3863021
TA08240	mRNA	TA08240	NC_011098.1	797787	799937	R	TA08240	complement(<797787..>799937)	Theileria annulata	3863022
TA08245	mRNA	TA08245	NC_011098.1	800168	801575	D	TA08245	join(<800168..800230,800336..800644,800832..801129,801212..801419,801449..>801575)	Theileria annulata	3863023
TA08250	mRNA	TA08250	NC_011098.1	801620	802123	D	TA08250	<801620..>802123	Theileria annulata	3863024
TA08255	mRNA	TA08255	NC_011098.1	802344	804665	R	TA08255	complement(join(<802344..803115,803230..803322,803354..803443,803478..803732,803790..803913,803953..804450,804530..>804665))	Theileria annulata	3863025
TA08260	mRNA	TA08260	NC_011098.1	804920	805570	R	TA08260	complement(<804920..>805570)	Theileria annulata	3863026
TA08265	mRNA	TA08265	NC_011098.1	805998	806321	R	TA08265	complement(<805998..>806321)	Theileria annulata	3863027
TA08270	mRNA	TA08270	NC_011098.1	807090	809401	D	TA08270	join(<807090..807157,807211..807228,807296..807797,807881..>809401)	Theileria annulata	3863028
TA08285	mRNA	TA08285	NC_011098.1	809567	811396	R	TA08285	complement(<809567..>811396)	Theileria annulata	3863031
TA08290	mRNA	TA08290	NC_011098.1	811648	813898	R	TA08290	complement(join(<811648..812960,813088..813141,813223..>813898))	Theileria annulata	3863032
TA08295	mRNA	TA08295	NC_011098.1	814059	817859	R	TA08295	complement(<814059..>817859)	Theileria annulata	3863033
TA08300	mRNA	TA08300	NC_011098.1	818405	819797	D	TA08300	join(<818405..818525,818564..818916,819001..819108,819205..819333,819409..819568,819670..>819797)	Theileria annulata	3863034
TA08302	mRNA	TA08302	NC_011098.1	821181	821870	D	TA08302	join(<821181..821369,821400..>821870)	Theileria annulata	3863035
TA08305	mRNA	TA08305	NC_011098.1	822078	822824	D	TA08305	<822078..>822824	Theileria annulata	3863036
TA08310	mRNA	TA08310	NC_011098.1	822980	825298	D	TA08310	<822980..>825298	Theileria annulata	3863037
TA08315	mRNA	TA08315	NC_011098.1	825435	826436	R	TA08315	complement(join(<825435..825924,826029..826204,826236..>826436))	Theileria annulata	3863038
TA08320	mRNA	TA08320	NC_011098.1	826641	829886	D	TA08320	join(<826641..826750,826897..827091,827209..827425,827513..827656,827687..827907,827937..828043,828072..828130,828160..828201,828233..828440,828581..828674,828723..828846,828956..829075,829193..829328,829604..829617,829692..>829886)	Theileria annulata	3863039
TA08325	mRNA	TA08325	NC_011098.1	831091	835764	D	TA08325	join(<831091..831211,831242..831368,831463..831631,831994..832231,832273..832377,832407..832520,832589..832883,833015..833343,833499..833770,833816..833966,834026..834519,834607..834698,834746..834863,834896..834996,835096..835294,835418..835593,835623..>835764)	Theileria annulata	3863040
TA08330	mRNA	TA08330	NC_011098.1	835935	838625	R	TA08330	complement(join(<835935..836126,836200..836322,836486..836826,836953..837780,837812..837884,837967..838075,838142..838217,838316..>838625))	Theileria annulata	3863041
TA08340	mRNA	TA08340	NC_011098.1	839488	840171	D	TA08340	join(<839488..839502,839536..>840171)	Theileria annulata	3863043
TA08345	mRNA	TA08345	NC_011098.1	840299	841619	R	TA08345	complement(join(<840299..840339,840449..840563,840679..840695,840725..840849,840879..840980,841038..841126,841185..841331,841432..841483,841513..>841619))	Theileria annulata	3863044
TA08350	mRNA	TA08350	NC_011098.1	842100	845654	D	TA08350	join(<842100..842214,842358..842587,842633..842772,842805..842925,843028..843199,843236..843268,843295..843358,843452..843518,843553..843661,843837..843982,844088..844288,844376..844433,844463..844953,845042..845211,845242..845309,845421..845538,845570..>845654)	Theileria annulata	3863045
TA08355	mRNA	TA08355	NC_011098.1	845756	849755	D	TA08355	join(<845756..845940,846030..846391,846430..846989,847084..847257,847319..847415,847509..847649,847734..847823,847855..847976,848007..848105,848221..848530,848560..848723,848759..848906,848959..849211,849335..>849755)	Theileria annulata	3863046
TA08360	mRNA	TA08360	NC_011098.1	850041	851333	R	TA08360	complement(<850041..>851333)	Theileria annulata	3863047
TA08365	mRNA	TA08365	NC_011098.1	851755	854220	R	TA08365	complement(<851755..>854220)	Theileria annulata	3863048
TA08370	mRNA	TA08370	NC_011098.1	854690	857293	R	TA08370	complement(<854690..>857293)	Theileria annulata	3863049
TA08375	mRNA	TA08375	NC_011098.1	857816	859152	R	TA08375	complement(join(<857816..858727,858835..>859152))	Theileria annulata	3863050
TA08380	mRNA	TA08380	NC_011098.1	860638	861411	D	TA08380	join(<860638..860693,860749..860865,860909..860954,861049..861198,861232..>861411)	Theileria annulata	3863051
TA08385	mRNA	TA08385	NC_011098.1	861552	862579	D	TA08385	join(<861552..862358,862390..862454,862501..>862579)	Theileria annulata	3863052
TA08395	mRNA	TA08395	NC_011098.1	862616	865691	D	TA08395	join(<862616..863131,863163..863372,863421..863473,863634..864405,864438..864529,864561..864606,864636..>865691)	Theileria annulata	3863054
TA08400	mRNA	TA08400	NC_011098.1	865780	867244	R	TA08400	complement(join(<865780..866215,866256..>867244))	Theileria annulata	3863055
TA08405	mRNA	TA08405	NC_011098.1	867537	868911	D	TA08405	join(<867537..867679,867711..867870,867906..868025,868054..868120,868162..868244,868276..868410,868471..>868911)	Theileria annulata	3863056
TA08410	mRNA	TA08410	NC_011098.1	869108	873240	D	TA08410	join(<869108..869623,869656..>873240)	Theileria annulata	3863057
TA08415	mRNA	TA08415	NC_011098.1	873363	874679	D	TA08415	<873363..>874679	Theileria annulata	3863058
TA08420	mRNA	TA08420	NC_011098.1	874711	875997	D	TA08420	join(<874711..874949,874983..875036,875076..875263,875295..875722,875755..>875997)	Theileria annulata	3863059
TA08425	mRNA	TA08425	NC_011098.1	876415	879096	D	TA08425	<876415..>879096	Theileria annulata	3863060
TA08430	mRNA	TA08430	NC_011098.1	879397	881282	R	TA08430	complement(join(<879397..879747,879810..880088,880117..880197,880227..880287,880317..880914,880949..>881282))	Theileria annulata	3863061
TA08435	mRNA	TA08435	NC_011098.1	881352	883381	D	TA08435	join(<881352..881846,881934..882011,882082..882144,882171..882294,882443..882552,882583..882696,882729..882890,882926..883051,883126..883218,883289..>883381)	Theileria annulata	3863062
TA08440	mRNA	TA08440	NC_011098.1	883613	885844	D	TA08440	<883613..>885844	Theileria annulata	3863063
TA08445	mRNA	TA08445	NC_011098.1	885936	886949	R	TA08445	complement(<885936..>886949)	Theileria annulata	3863064
TA08450	mRNA	TA08450	NC_011098.1	887273	888748	D	TA08450	<887273..>888748	Theileria annulata	3863065
TA08455	mRNA	TA08455	NC_011098.1	889037	890308	R	TA08455	complement(join(<889037..889223,889323..>890308))	Theileria annulata	3863066
TA08460	mRNA	TA08460	NC_011098.1	890775	892304	D	TA08460	join(<890775..891348,891384..891517,891551..891599,891631..891650,891706..892092,892134..>892304)	Theileria annulata	3863067
TA08465	mRNA	TA08465	NC_011098.1	892407	893634	R	TA08465	complement(join(<892407..892619,892671..892759,892791..892847,892879..892978,893007..893166,893232..893317,893377..>893634))	Theileria annulata	3863068
TA08470	mRNA	TA08470	NC_011098.1	893793	896532	R	TA08470	complement(join(<893793..894164,894201..894779,894813..895227,895367..>896532))	Theileria annulata	3863069
TA08475	mRNA	TA08475	NC_011098.1	897604	898356	R	TA08475	complement(<897604..>898356)	Theileria annulata	3863070
TA08480	mRNA	TA08480	NC_011098.1	899367	902285	D	TA08480	join(<899367..900128,900184..900626,900681..900789,900838..900975,901055..901660,901736..901855,901894..901977,902124..>902285)	Theileria annulata	3863071
TA08485	mRNA	TA08485	NC_011098.1	902636	903947	D	TA08485	join(<902636..902918,902976..903497,903550..>903947)	Theileria annulata	3863072
TA08490	mRNA	TA08490	NC_011098.1	904130	905911	D	TA08490	join(<904130..904849,904905..905120,905161..905217,905259..905310,905344..905511,905601..>905911)	Theileria annulata	3863073
TA08500	mRNA	TA08500	NC_011098.1	906415	906864	D	TA08500	join(<906415..906496,906511..906689,906727..>906864)	Theileria annulata	3863075
TA08505	mRNA	TA08505	NC_011098.1	907013	907411	D	TA08505	<907013..>907411	Theileria annulata	3863076
TA08510	mRNA	TA08510	NC_011098.1	907647	907868	D	TA08510	<907647..>907868	Theileria annulata	3863077
TA08515	mRNA	TA08515	NC_011098.1	909310	912906	D	TA08515	join(<909310..909435,909542..909636,909748..909859,909891..909936,909993..910445,910514..911447,911498..911624,911674..912336,912400..>912906)	Theileria annulata	3863116
TA08520	mRNA	TA08520	NC_011098.1	912968	914746	R	TA08520	complement(join(<912968..913812,913930..>914746))	Theileria annulata	3863117
TA08525	mRNA	TA08525	NC_011098.1	915061	916094	R	TA08525	complement(join(<915061..915199,915265..915566,915657..>916094))	Theileria annulata	3863118
TA08530	mRNA	TA08530	NC_011098.1	916925	918410	D	TA08530	join(<916925..917078,917161..917450,917534..917599,917652..>918410)	Theileria annulata	3863119
TA08535	mRNA	TA08535	NC_011098.1	918637	920463	R	TA08535	complement(<918637..>920463)	Theileria annulata	3863120
TA08540	mRNA	TA08540	NC_011098.1	920643	923177	R	TA08540	complement(<920643..>923177)	Theileria annulata	3863121
TA08545	mRNA	TA08545	NC_011098.1	923320	925542	R	TA08545	complement(join(<923320..925232,925269..>925542))	Theileria annulata	3863122
TA08560	mRNA	TA08560	NC_011098.1	925694	928081	R	TA08560	complement(join(<925694..926105,926202..926627,926687..926756,926812..927307,927405..927827,927926..>928081))	Theileria annulata	3863125
TA08565	mRNA	TA08565	NC_011098.1	928831	930951	D	TA08565	join(<928831..928963,929025..929246,929329..929619,929679..930035,930100..930644,930715..>930951)	Theileria annulata	3863126
TA08570	mRNA	TA08570	NC_011098.1	931092	931635	R	TA08570	complement(join(<931092..931400,931483..>931635))	Theileria annulata	3863127
TA08575	mRNA	TA08575	NC_011098.1	931779	932637	R	TA08575	complement(join(<931779..931990,932178..>932637))	Theileria annulata	3863128
TA08580	mRNA	TA08580	NC_011098.1	933144	935199	R	TA08580	complement(join(<933144..934037,934109..934191,934235..934395,934448..934783,934937..>935199))	Theileria annulata	3863129
TA08585	mRNA	TA08585	NC_011098.1	936096	938412	R	TA08585	complement(join(<936096..936402,936454..936725,936758..936837,936872..937000,937032..937107,937175..937243,937301..937436,937507..937616,937654..937753,937783..938022,938083..938180,938314..>938412))	Theileria annulata	3863130
TA08590	mRNA	TA08590	NC_011098.1	938350	939577	D	TA08590	join(<938350..938600,938641..938744,938855..939303,939392..>939577)	Theileria annulata	3863131
TA08595	mRNA	TA08595	NC_011098.1	939839	941149	D	TA08595	join(<939839..939887,939975..>941149)	Theileria annulata	3863132
TA08600	mRNA	TA08600	NC_011098.1	941261	941735	R	TA08600	complement(join(<941261..941474,941530..>941735))	Theileria annulata	3863133
TA08605	mRNA	TA08605	NC_011098.1	941978	945536	D	TA08605	join(<941978..942223,942335..942634,942698..942785,942839..942996,943031..943171,943209..944993,945058..945200,945232..945328,945360..>945536)	Theileria annulata	3863134
TA08615	mRNA	TA08615	NC_011098.1	945675	946218	D	TA08615	join(<945675..945781,945899..946022,946105..>946218)	Theileria annulata	3863156
TA08620	mRNA	TA08620	NC_011098.1	946301	948402	R	TA08620	complement(join(<946301..947101,947164..>948402))	Theileria annulata	3863157
TA08625	mRNA	TA08625	NC_011098.1	948610	948958	D	TA08625	join(<948610..948784,948861..>948958)	Theileria annulata	3863158
TA08630	mRNA	TA08630	NC_011098.1	949386	952456	D	TA08630	join(<949386..949556,949613..949769,949854..949943,949975..950200,950232..950382,950431..950784,950818..951333,951401..951499,951552..952151,952217..>952456)	Theileria annulata	3863159
TA08635	mRNA	TA08635	NC_011098.1	952562	956728	R	TA08635	complement(join(<952562..952982,953077..953127,953176..953214,953249..953712,953758..954723,954754..954833,954867..955457,955489..955532,955565..955679,955708..955826,955859..955989,956023..956179,956226..956425,956458..956496,956540..>956728))	Theileria annulata	3863160
TA08640	mRNA	TA08640	NC_011098.1	957069	959407	D	TA08640	join(<957069..957333,957431..957585,957614..957734,957764..957854,957886..958189,958222..958547,958580..958985,959033..959104,959134..959234,959302..>959407)	Theileria annulata	3863161
TA08645	mRNA	TA08645	NC_011098.1	959489	960982	D	TA08645	join(<959489..959600,959673..959876,959929..960175,960220..960353,960417..960487,960519..960683,960714..960858,960927..>960982)	Theileria annulata	3863162
TA08650	mRNA	TA08650	NC_011098.1	960983	964479	R	TA08650	complement(join(<960983..961199,961303..961459,961742..961857,961952..963118,963159..963604,963634..963695,963725..963786,963840..964182,964247..964344,964391..>964479))	Theileria annulata	3863163
TA08655	mRNA	TA08655	NC_011098.1	964719	968015	R	TA08655	complement(<964719..>968015)	Theileria annulata	3863164
TA08660	mRNA	TA08660	NC_011098.1	968427	971143	R	TA08660	complement(join(<968427..968540,968569..968682,968722..968829,969013..969087,969116..969183,969254..969327,969359..969405,969503..969821,969851..969955,969986..970238,970271..970340,970370..970553,970583..970655,970685..970849,970889..971008,971065..>971143))	Theileria annulata	3863165
TA08665	mRNA	TA08665	NC_011098.1	971835	972176	D	TA08665	join(<971835..972047,972078..>972176)	Theileria annulata	3863166
TA08670	mRNA	TA08670	NC_011098.1	973089	974923	D	TA08670	join(<973089..973517,973547..>974923)	Theileria annulata	3863167
TA08675	mRNA	TA08675	NC_011098.1	975072	978197	R	TA08675	complement(<975072..>978197)	Theileria annulata	3863168
TA08680	mRNA	TA08680	NC_011098.1	978375	980099	R	TA08680	complement(<978375..>980099)	Theileria annulata	3863169
TA08685	mRNA	TA08685	NC_011098.1	981321	984560	R	TA08685	complement(join(<981321..982355,982389..982550,982611..982919,982966..983466,983498..983559,983597..983668,983699..984002,984032..984113,984144..984252,984284..984436,984476..>984560))	Theileria annulata	3863170
TA08690	mRNA	TA08690	NC_011098.1	985158	987231	D	TA08690	join(<985158..985446,985476..985543,985591..985702,985739..985812,986035..986051,986090..986686,986727..986876,986907..>987231)	Theileria annulata	3863171
TA08695	mRNA	TA08695	NC_011098.1	987405	989251	D	TA08695	join(<987405..987622,987659..987867,987896..987982,988016..988176,988207..988379,988397..988476,988508..988641,988658..988710,988736..988898,988907..>989251)	Theileria annulata	3863172
TA08700	mRNA	TA08700	NC_011098.1	989448	990329	D	TA08700	join(<989448..989624,989653..989721,989750..989824,989854..989967,990000..990081,990113..990199,990229..>990329)	Theileria annulata	3863173
TA08705	mRNA	TA08705	NC_011098.1	990394	991587	R	TA08705	complement(join(<990394..991554,991579..>991587))	Theileria annulata	3863174
TA08710	mRNA	TA08710	NC_011098.1	992434	993072	D	TA08710	<992434..>993072	Theileria annulata	3863175
TA08725	mRNA	TA08725	NC_011098.1	993196	995500	R	TA08725	complement(join(<993196..993447,993515..994702,994732..994888,994919..995019,995123..>995500))	Theileria annulata	3863178
TA08730	mRNA	TA08730	NC_011098.1	995631	997531	R	TA08730	complement(join(<995631..995728,995760..995899,995930..996110,996140..996211,996241..996706,996737..996934,996962..>997531))	Theileria annulata	3863179
TA08735	mRNA	TA08735	NC_011098.1	997803	999609	D	TA08735	join(<997803..997893,997929..998113,998145..998235,998266..998405,998438..998480,998510..998624,998654..998716,998751..>999609)	Theileria annulata	3863180
TA08740	mRNA	TA08740	NC_011098.1	999884	1000978	R	TA08740	complement(join(<999884..999949,999979..1000304,1000334..1000447,1000491..1000590,1000620..1000831,1000873..>1000978))	Theileria annulata	3863181
TA08745	mRNA	TA08745	NC_011098.1	1001293	1002727	D	TA08745	join(<1001293..1001355,1001389..1001673,1001704..1002001,1002031..1002166,1002199..1002335,1002368..1002498,1002530..1002650,1002696..>1002727)	Theileria annulata	3863182
TA08750	mRNA	TA08750	NC_011098.1	1002982	1006282	D	TA08750	join(<1002982..1003743,1003775..>1006282)	Theileria annulata	3863183
TA08755	mRNA	TA08755	NC_011098.1	1006739	1009516	D	TA08755	<1006739..>1009516	Theileria annulata	3863184
TA08760	mRNA	TA08760	NC_011098.1	1009608	1010119	R	TA08760	complement(join(<1009608..1009707,1009746..1009899,1009940..1009991,1010021..>1010119))	Theileria annulata	3863185
TA08765	mRNA	TA08765	NC_011098.1	1010225	1012693	R	TA08765	complement(join(<1010225..1010331,1010363..1010786,1010818..1010994,1011024..1011614,1011645..1011848,1011878..1012428,1012471..>1012693))	Theileria annulata	3863186
TA08770	mRNA	TA08770	NC_011098.1	1012866	1013591	R	TA08770	complement(<1012866..>1013591)	Theileria annulata	3863187
TA08775	mRNA	TA08775	NC_011098.1	1013675	1015458	R	TA08775	complement(join(<1013675..1013899,1013934..1014094,1014126..1014220,1014250..1014316,1014346..1014491,1014522..1014615,1014644..1015152,1015184..>1015458))	Theileria annulata	3863188
TA08780	mRNA	TA08780	NC_011098.1	1015659	1015913	R	TA08780	complement(join(<1015659..1015752,1015783..>1015913))	Theileria annulata	3863189
TA08785	mRNA	TA08785	NC_011098.1	1016596	1019423	D	TA08785	join(<1016596..1016776,1016816..1017510,1017541..1017628,1017659..1017738,1017796..1017922,1017952..1018186,1018219..1018433,1018463..1018603,1018633..1018871,1018901..1019147,1019178..1019254,1019286..>1019423)	Theileria annulata	3863190
TA08790	mRNA	TA08790	NC_011098.1	1019723	1024360	D	TA08790	<1019723..>1024360	Theileria annulata	3863191
TA08795	mRNA	TA08795	NC_011098.1	1024625	1026513	D	TA08795	join(<1024625..1024738,1024834..1026191,1026222..1026325,1026356..>1026513)	Theileria annulata	3863192
TA08800	mRNA	TA08800	NC_011098.1	1026805	1029950	D	TA08800	join(<1026805..1027810,1027840..1027968,1028001..1028082,1028112..1028270,1028300..1028391,1028426..1028560,1028591..1028719,1028754..1028861,1028892..1029082,1029112..1029628,1029661..>1029950)	Theileria annulata	3863193
TA08805	mRNA	TA08805	NC_011098.1	1030060	1032312	D	TA08805	join(<1030060..1030071,1030108..1030214,1030244..1030466,1030499..1030653,1030684..1030720,1030751..1030820,1030852..1030948,1030977..1031077,1031109..1031256,1031287..1031344,1031375..1031473,1031504..1031597,1031626..1031862,1031893..1031997,1032029..1032137,1032189..>1032312)	Theileria annulata	3863194
TA08810	mRNA	TA08810	NC_011098.1	1032320	1032780	D	TA08810	join(<1032320..1032616,1032646..>1032780)	Theileria annulata	3863195
TA08815	mRNA	TA08815	NC_011098.1	1032859	1034630	R	TA08815	complement(join(<1032859..1033272,1033304..1033794,1033826..1034048,1034080..1034203,1034234..1034360,1034390..>1034630))	Theileria annulata	3863196
TA08820	mRNA	TA08820	NC_011098.1	1034910	1036211	D	TA08820	join(<1034910..1034939,1034971..1035045,1035082..1035345,1035376..1035447,1035475..1035546,1035577..1035959,1036028..>1036211)	Theileria annulata	3863197
TA08835	mRNA	TA08835	NC_011098.1	1036770	1037817	R	TA08835	complement(join(<1036770..1036939,1036981..1037071,1037101..1037289,1037321..1037579,1037609..>1037817))	Theileria annulata	3863200
TA08840	mRNA	TA08840	NC_011098.1	1037995	1041689	R	TA08840	complement(join(<1037995..1040741,1040772..1040897,1040927..1041211,1041242..1041439,1041470..>1041689))	Theileria annulata	3863201
TA08845	mRNA	TA08845	NC_011098.1	1042281	1049011	D	TA08845	join(<1042281..1042440,1042490..1042582,1042612..1042683,1042714..1042963,1042995..1043079,1043109..1043177,1043209..1043459,1043492..1043667,1043703..>1049011)	Theileria annulata	3863202
TA08850	mRNA	TA08850	NC_011098.1	1049152	1049892	D	TA08850	join(<1049152..1049255,1049322..>1049892)	Theileria annulata	3863203
TA08855	mRNA	TA08855	NC_011098.1	1050117	1057516	R	TA08855	complement(join(<1050117..1050353,1050448..1050629,1050659..1050755,1050828..1052126,1052156..1052360,1052391..>1057516))	Theileria annulata	3863204
TA08860	mRNA	TA08860	NC_011098.1	1057825	1060288	D	TA08860	join(<1057825..1059699,1059730..1060159,1060188..>1060288)	Theileria annulata	3863205
TA08865	mRNA	TA08865	NC_011098.1	1060470	1062139	R	TA08865	complement(join(<1060470..1060805,1060834..1060929,1060989..1061106,1061170..1061288,1061326..1061428,1061478..1061747,1061803..1061914,1062004..>1062139))	Theileria annulata	3863206
TA08875	mRNA	TA08875	NC_011098.1	1062928	1063878	D	TA08875	<1062928..>1063878	Theileria annulata	3863207
TA08880	mRNA	TA08880	NC_011098.1	1064456	1065726	D	TA08880	join(<1064456..1064605,1064639..1065128,1065191..1065532,1065575..>1065726)	Theileria annulata	3863208
TA08890	mRNA	TA08890	NC_011098.1	1065979	1068498	D	TA08890	join(<1065979..1066072,1066114..1066836,1066893..1067404,1067435..1067521,1067553..1067604,1067668..1067834,1067881..>1068498)	Theileria annulata	3863210
TA08895	mRNA	TA08895	NC_011098.1	1068685	1069041	R	TA08895	complement(join(<1068685..1068806,1068837..>1069041))	Theileria annulata	3863211
TA08900	mRNA	TA08900	NC_011098.1	1069110	1071970	R	TA08900	complement(join(<1069110..1071564,1071637..1071705,1071752..1071852,1071896..>1071970))	Theileria annulata	3863212
TA08905	mRNA	TA08905	NC_011098.1	1072350	1072970	D	TA08905	<1072350..>1072970	Theileria annulata	3863135
TA08910	mRNA	TA08910	NC_011098.1	1073001	1073399	D	TA08910	join(<1073001..1073190,1073242..>1073399)	Theileria annulata	3863136
TA08915	mRNA	TA08915	NC_011098.1	1075205	1076347	D	TA08915	join(<1075205..1075637,1075698..>1076347)	Theileria annulata	3863137
TA08920	mRNA	TA08920	NC_011098.1	1076563	1079565	D	TA08920	<1076563..>1079565	Theileria annulata	3863138
TA08925	mRNA	TA08925	NC_011098.1	1079732	1081138	R	TA08925	complement(<1079732..>1081138)	Theileria annulata	3863139
TA08930	mRNA	TA08930	NC_011098.1	1081677	1082847	D	TA08930	join(<1081677..1081764,1081800..1081862,1081952..>1082847)	Theileria annulata	3863140
TA08935	mRNA	TA08935	NC_011098.1	1082960	1083354	R	TA08935	complement(join(<1082960..1083049,1083087..1083194,1083232..>1083354))	Theileria annulata	3863141
TA08945	mRNA	TA08945	NC_011098.1	1083421	1085071	R	TA08945	complement(join(<1083421..1083530,1083560..1083665,1083695..1084092,1084140..1084247,1084283..1084484,1084526..1084711,1084742..>1085071))	Theileria annulata	3863143
TA08950	mRNA	TA08950	NC_011098.1	1085865	1089822	D	TA08950	join(<1085865..1086072,1086104..1087411,1087478..1088019,1088077..1088379,1088438..1088788,1088847..1088945,1088998..>1089822)	Theileria annulata	3863144
TA08955	mRNA	TA08955	NC_011098.1	1090292	1090945	D	TA08955	join(<1090292..1090311,1090378..>1090945)	Theileria annulata	3863145
TA08960	mRNA	TA08960	NC_011098.1	1091082	1091794	D	TA08960	join(<1091082..1091209,1091283..1091496,1091567..>1091794)	Theileria annulata	3863146
TA08965	mRNA	TA08965	NC_011098.1	1091824	1095115	R	TA08965	complement(join(<1091824..1091937,1091997..1092489,1092537..1092604,1092674..>1095115))	Theileria annulata	3863147
TA08970	mRNA	TA08970	NC_011098.1	1095206	1095976	R	TA08970	complement(join(<1095206..1095499,1095554..1095686,1095719..1095835,1095867..>1095976))	Theileria annulata	3863148
TA08975	mRNA	TA08975	NC_011098.1	1096407	1097248	D	TA08975	join(<1096407..1096737,1096767..>1097248)	Theileria annulata	3863149
TA08980	mRNA	TA08980	NC_011098.1	1098273	1099672	D	TA08980	join(<1098273..1098877,1099012..1099485,1099546..>1099672)	Theileria annulata	3863150
TA08985	mRNA	TA08985	NC_011098.1	1099778	1102088	D	TA08985	join(<1099778..1100714,1100745..1100844,1100877..1100955,1100996..1101060,1101143..1101760,1101809..>1102088)	Theileria annulata	3863151
TA08990	mRNA	TA08990	NC_011098.1	1102185	1103624	R	TA08990	complement(join(<1102185..1102256,1102292..1102345,1102376..1102446,1102485..1102594,1102624..1102670,1102719..1102750,1102783..1102847,1102912..1103136,1103210..1103278,1103348..1103397,1103526..>1103624))	Theileria annulata	3863152
TA09000	mRNA	TA09000	NC_011098.1	1103687	1105270	R	TA09000	complement(join(<1103687..1103772,1103824..1103865,1103932..1103992,1104062..1104202,1104233..>1105270))	Theileria annulata	3863213
TA09005	mRNA	TA09005	NC_011098.1	1105643	1106694	D	TA09005	join(<1105643..1105706,1105738..1105890,1105928..1106252,1106307..1106439,1106503..>1106694)	Theileria annulata	3863214
TA09010	mRNA	TA09010	NC_011098.1	1107007	1107865	D	TA09010	join(<1107007..1107708,1107776..>1107865)	Theileria annulata	3863215
TA09015	mRNA	TA09015	NC_011098.1	1107881	1109577	R	TA09015	complement(join(<1107881..1108457,1108516..1108599,1108630..1108685,1108719..1108773,1108804..1108985,1109049..1109132,1109186..1109220,1109255..1109367,1109477..>1109577))	Theileria annulata	3863216
TA09020	mRNA	TA09020	NC_011098.1	1109813	1110272	D	TA09020	join(<1109813..1109894,1109926..>1110272)	Theileria annulata	3863217
TA09025	mRNA	TA09025	NC_011098.1	1110299	1113172	D	TA09025	join(<1110299..1110322,1110359..1110407,1110441..1110511,1110541..1110756,1110813..1111084,1111123..1111295,1111352..1111801,1111832..1112549,1112579..1112636,1112671..1112757,1112822..1112948,1113018..>1113172)	Theileria annulata	3863218
TA09030	mRNA	TA09030	NC_011098.1	1113561	1118534	D	TA09030	join(<1113561..1117232,1117284..1117400,1117441..1117528,1117571..1117920,1117953..>1118534)	Theileria annulata	3863219
TA09035	mRNA	TA09035	NC_011098.1	1119228	1120022	R	TA09035	complement(join(<1119228..1119440,1119800..1119922,1119951..>1120022))	Theileria annulata	3863220
TA09040	mRNA	TA09040	NC_011098.1	1120814	1122001	D	TA09040	join(<1120814..1120856,1120910..1121433,1121464..1121580,1121631..1121818,1121881..>1122001)	Theileria annulata	3863221
TA09045	mRNA	TA09045	NC_011098.1	1122190	1124147	D	TA09045	join(<1122190..1122464,1122542..1122881,1122923..1123234,1123289..1123489,1123558..1123681,1123732..1123792,1123849..1124005,1124037..>1124147)	Theileria annulata	3863222
TA09055	mRNA	TA09055	NC_011098.1	1124468	1125187	D	TA09055	<1124468..>1125187	Theileria annulata	3863224
TA09060	mRNA	TA09060	NC_011098.1	1125256	1127218	R	TA09060	complement(join(<1125256..1125503,1125575..1126465,1126507..>1127218))	Theileria annulata	3863225
TA09065	mRNA	TA09065	NC_011098.1	1128315	1129481	D	TA09065	join(<1128315..1128441,1128649..1129376,1129407..>1129481)	Theileria annulata	3863226
TA09070	mRNA	TA09070	NC_011098.1	1129520	1130484	R	TA09070	complement(join(<1129520..1129679,1129711..1129811,1129857..1130123,1130212..>1130484))	Theileria annulata	3863227
TA09075	mRNA	TA09075	NC_011098.1	1130600	1131905	R	TA09075	complement(join(<1130600..1130671,1130702..1130770,1130800..1130832,1130898..1131005,1131048..1131276,1131305..1131443,1131638..1131743,1131813..>1131905))	Theileria annulata	3863228
TA09080	mRNA	TA09080	NC_011098.1	1131998	1132576	R	TA09080	complement(<1131998..>1132576)	Theileria annulata	3863229
TA09085	mRNA	TA09085	NC_011098.1	1132842	1133383	R	TA09085	complement(join(<1132842..1133029,1133062..1133278,1133333..>1133383))	Theileria annulata	3863230
TA09090	mRNA	TA09090	NC_011098.1	1134161	1135525	D	TA09090	<1134161..>1135525	Theileria annulata	3863231
TA09095	mRNA	TA09095	NC_011098.1	1135879	1136181	D	TA09095	<1135879..>1136181	Theileria annulata	3863232
TA09100	mRNA	TA09100	NC_011098.1	1136685	1139008	D	TA09100	join(<1136685..1136843,1136897..1137092,1137141..1137236,1137286..1137624,1137729..1138414,1138484..>1139008)	Theileria annulata	3863233
TA09105	mRNA	TA09105	NC_011098.1	1139079	1141435	R	TA09105	complement(join(<1139079..1141204,1141237..>1141435))	Theileria annulata	3863234
TA09110	mRNA	TA09110	NC_011098.1	1141475	1145764	R	TA09110	complement(<1141475..>1145764)	Theileria annulata	3863235
TA09115	mRNA	TA09115	NC_011098.1	1146378	1147825	D	TA09115	join(<1146378..1146620,1146695..1146802,1146833..1147043,1147110..1147262,1147341..>1147825)	Theileria annulata	3863236
TA09120	mRNA	TA09120	NC_011098.1	1147938	1149549	D	TA09120	join(<1147938..1148148,1148220..1148406,1148496..1148785,1148908..1149038,1149117..1149234,1149326..>1149549)	Theileria annulata	3863237
TA09125	mRNA	TA09125	NC_011098.1	1149678	1150421	R	TA09125	complement(<1149678..>1150421)	Theileria annulata	3863238
TA09130	mRNA	TA09130	NC_011098.1	1150985	1152548	D	TA09130	join(<1150985..1151413,1151460..>1152548)	Theileria annulata	3863239
TA11045	mRNA	TA11045	NC_011098.1	1152586	1154513	R	TA11045	complement(join(<1152586..1152653,1152770..1152824,1152855..1152927,1153114..1153209,1153240..1153349,1153525..1153628,1153729..1153826,1153857..1153930,1153996..1154111,1154190..1154334,1154493..>1154513))	Theileria annulata	3862865
TA11040	mRNA	TA11040	NC_011098.1	1154724	1156768	D	TA11040	join(<1154724..1155330,1155505..1156325,1156454..>1156768)	Theileria annulata	3862864
TA11035	mRNA	TA11035	NC_011098.1	1156787	1157159	R	TA11035	complement(join(<1156787..1156978,1157034..>1157159))	Theileria annulata	3862863
TA11030	mRNA	TA11030	NC_011098.1	1158109	1159743	D	TA11030	<1158109..>1159743	Theileria annulata	3862862
TA11020	mRNA	TA11020	NC_011098.1	1161926	1162219	D	TA11020	join(<1161926..1162090,1162121..>1162219)	Theileria annulata	3862860
TA11015	mRNA	TA11015	NC_011098.1	1162530	1165873	D	TA11015	join(<1162530..1163436,1163600..1163819,1163876..1164670,1164834..1165410,1165476..1165625,1165661..>1165873)	Theileria annulata	3862859
TA11010	mRNA	TA11010	NC_011098.1	1166012	1168561	R	TA11010	complement(join(<1166012..1166304,1166348..1166676,1166799..1166984,1167014..1167264,1167296..1168248,1168321..>1168561))	Theileria annulata	3862858
TA11005	mRNA	TA11005	NC_011098.1	1168895	1169893	D	TA11005	<1168895..>1169893	Theileria annulata	3862857
TA11000	mRNA	TA11000	NC_011098.1	1169895	1172831	R	TA11000	complement(<1169895..>1172831)	Theileria annulata	3862856
TA10995	mRNA	TA10995	NC_011098.1	1172992	1176898	R	TA10995	complement(join(<1172992..1173394,1173424..1173552,1173582..1173720,1173802..1174871,1174935..1175182,1175248..1175697,1175742..1176530,1176564..1176613,1176646..>1176898))	Theileria annulata	3862855
TA10990	mRNA	TA10990	NC_011098.1	1177089	1178033	D	TA10990	<1177089..>1178033	Theileria annulata	3862854
TA10985	mRNA	TA10985	NC_011098.1	1178116	1180258	R	TA10985	complement(join(<1178116..1179390,1179420..1179581,1179612..1179869,1179923..>1180258))	Theileria annulata	3862853
TA10980	mRNA	TA10980	NC_011098.1	1180798	1181886	R	TA10980	complement(<1180798..>1181886)	Theileria annulata	3862852
TA10975	mRNA	TA10975	NC_011098.1	1181900	1186336	R	TA10975	complement(<1181900..>1186336)	Theileria annulata	3862851
TA10960	mRNA	TA10960	NC_011098.1	1186776	1188018	D	TA10960	join(<1186776..1186839,1186959..1187376,1187400..1187639,1187733..>1188018)	Theileria annulata	3862848
TA10955	mRNA	TA10955	NC_011098.1	1188020	1190106	R	TA10955	complement(join(<1188020..1188454,1188543..1188672,1188704..1188864,1188900..1189048,1189078..1189262,1189345..1189451,1189486..>1190106))	Theileria annulata	3862847
TA10950	mRNA	TA10950	NC_011098.1	1190211	1192403	R	TA10950	complement(<1190211..>1192403)	Theileria annulata	3862846
TA10945	mRNA	TA10945	NC_011098.1	1193208	1193568	D	TA10945	join(<1193208..1193326,1193362..1193485,1193515..>1193568)	Theileria annulata	3862845
TA10940	mRNA	TA10940	NC_011098.1	1193613	1194803	R	TA10940	complement(<1193613..>1194803)	Theileria annulata	3862844
TA10935	mRNA	TA10935	NC_011098.1	1195725	1196914	D	TA10935	join(<1195725..1196510,1196564..>1196914)	Theileria annulata	3862843
TA10930	mRNA	TA10930	NC_011098.1	1196969	1197972	R	TA10930	complement(join(<1196969..1197136,1197169..1197315,1197367..1197499,1197524..>1197972))	Theileria annulata	3862842
TA10925	mRNA	TA10925	NC_011098.1	1198075	1199409	R	TA10925	complement(join(<1198075..1198225,1198258..1198419,1198449..1198847,1198877..1199012,1199043..>1199409))	Theileria annulata	3862841
TA10920	mRNA	TA10920	NC_011098.1	1199641	1201035	R	TA10920	complement(join(<1199641..1199788,1199819..1199980,1200012..1200407,1200437..1200572,1200603..>1201035))	Theileria annulata	3862840
TA10915	mRNA	TA10915	NC_011098.1	1201314	1202953	R	TA10915	complement(join(<1201314..1201947,1202014..1202734,1202767..>1202953))	Theileria annulata	3862839
TA10910	mRNA	TA10910	NC_011098.1	1203388	1205097	R	TA10910	complement(join(<1203388..1203559,1203589..1203745,1203803..1203858,1203887..1204010,1204042..1204138,1204168..1204241,1204272..1204458,1204494..1204644,1204673..1204831,1204871..>1205097))	Theileria annulata	3862838
TA10905	mRNA	TA10905	NC_011098.1	1205201	1207963	R	TA10905	complement(<1205201..>1207963)	Theileria annulata	3862837
TA10900	mRNA	TA10900	NC_011098.1	1208479	1209073	D	TA10900	join(<1208479..1208848,1208904..>1209073)	Theileria annulata	3862836
TA10895	mRNA	TA10895	NC_011098.1	1209112	1210841	R	TA10895	complement(join(<1209112..1209259,1209292..>1210841))	Theileria annulata	3862835
TA10890	mRNA	TA10890	NC_011098.1	1211408	1213227	D	TA10890	join(<1211408..1212358,1212414..1212771,1212803..>1213227)	Theileria annulata	3862834
TA10885	mRNA	TA10885	NC_011098.1	1214229	1220468	D	TA10885	join(<1214229..1214298,1214366..1214908,1214935..1215186,1215279..1215524,1215593..1216107,1216176..>1220468)	Theileria annulata	3862833
TA10880	mRNA	TA10880	NC_011098.1	1220754	1221549	R	TA10880	complement(join(<1220754..1220865,1220972..1221218,1221285..>1221549))	Theileria annulata	3862832
TA10875	mRNA	TA10875	NC_011098.1	1224035	1224831	D	TA10875	join(<1224035..1224062,1224073..1224089,1224144..1224334,1224368..1224650,1224688..>1224831)	Theileria annulata	3862831
TA10870	mRNA	TA10870	NC_011098.1	1225193	1226932	D	TA10870	<1225193..>1226932	Theileria annulata	3862830
TA10865	mRNA	TA10865	NC_011098.1	1227087	1228826	R	TA10865	complement(<1227087..>1228826)	Theileria annulata	3862829
TA10850	mRNA	TA10850	NC_011098.1	1229011	1230629	R	TA10850	complement(join(<1229011..1229265,1229304..1229415,1229467..1230058,1230088..1230175,1230226..1230303,1230375..>1230629))	Theileria annulata	3862826
TA10845	mRNA	TA10845	NC_011098.1	1231183	1234135	D	TA10845	join(<1231183..1231393,1231458..1232237,1232280..1232495,1232525..1232583,1232613..1233173,1233203..1233342,1233373..1233437,1233466..1233659,1233691..1233828,1233858..1233991,1234021..>1234135)	Theileria annulata	3862825
TA10840	mRNA	TA10840	NC_011098.1	1234290	1236062	D	TA10840	join(<1234290..1234580,1234638..1235028,1235058..1235173,1235206..1235313,1235345..1235454,1235483..1235576,1235608..1235700,1235730..>1236062)	Theileria annulata	3862824
TA10835	mRNA	TA10835	NC_011098.1	1236851	1237268	R	TA10835	complement(join(<1236851..1237099,1237152..>1237268))	Theileria annulata	3862823
TA10830	mRNA	TA10830	NC_011098.1	1237446	1238016	R	TA10830	complement(join(<1237446..1237726,1237824..>1238016))	Theileria annulata	3862822
TA10825	mRNA	TA10825	NC_011098.1	1238152	1238618	R	TA10825	complement(join(<1238152..1238255,1238266..1238383,1238425..1238554,1238605..>1238618))	Theileria annulata	3862821
TA10820	mRNA	TA10820	NC_011098.1	1239880	1240660	R	TA10820	complement(join(<1239880..1240038,1240139..>1240660))	Theileria annulata	3862820
TA10815	mRNA	TA10815	NC_011098.1	1240779	1244486	R	TA10815	complement(join(<1240779..1241066,1241096..1241208,1241250..1241769,1241799..1241887,1241920..1242036,1242071..1242220,1242253..1242740,1242899..1243220,1243251..1243645,1243679..1243790,1243829..1243912,1243952..>1244486))	Theileria annulata	3862819
TA10810	mRNA	TA10810	NC_011098.1	1244634	1245328	R	TA10810	complement(join(<1244634..1244837,1244885..>1245328))	Theileria annulata	3862818
TA10805	mRNA	TA10805	NC_011098.1	1245694	1246722	R	TA10805	complement(<1245694..>1246722)	Theileria annulata	3862817
TA10800	mRNA	TA10800	NC_011098.1	1247375	1248559	D	TA10800	<1247375..>1248559	Theileria annulata	3862816
TA10795	mRNA	TA10795	NC_011098.1	1249084	1250244	D	TA10795	<1249084..>1250244	Theileria annulata	3862815
TA10790	mRNA	TA10790	NC_011098.1	1250393	1253319	D	TA10790	join(<1250393..1250417,1250449..1250938,1250969..1251155,1251186..1251550,1251580..1251810,1251858..1252102,1252140..1252376,1252454..1252570,1252612..1252748,1252831..>1253319)	Theileria annulata	3862814
TA10785	mRNA	TA10785	NC_011098.1	1253419	1254210	R	TA10785	complement(join(<1253419..1253773,1253803..1254009,1254044..>1254210))	Theileria annulata	3862813
TA10780	mRNA	TA10780	NC_011098.1	1254657	1255220	D	TA10780	<1254657..>1255220	Theileria annulata	3862812
TA10775	mRNA	TA10775	NC_011098.1	1255333	1255882	D	TA10775	join(<1255333..1255543,1255611..>1255882)	Theileria annulata	3862811
TA10770	mRNA	TA10770	NC_011098.1	1255944	1257546	R	TA10770	complement(join(<1255944..1256490,1256523..1256617,1256647..1257224,1257258..>1257546))	Theileria annulata	3862810
TA10765	mRNA	TA10765	NC_011098.1	1257632	1257856	D	TA10765	join(<1257632..1257763,1257794..>1257856)	Theileria annulata	3862809
TA10760	mRNA	TA10760	NC_011098.1	1257981	1260254	R	TA10760	complement(<1257981..>1260254)	Theileria annulata	3862808
TA10755	mRNA	TA10755	NC_011098.1	1260610	1261926	R	TA10755	complement(join(<1260610..1260787,1260835..1261523,1261557..1261771,1261863..>1261926))	Theileria annulata	3862807
TA10740	mRNA	TA10740	NC_011098.1	1262018	1263067	R	TA10740	complement(join(<1262018..1262155,1262195..>1263067))	Theileria annulata	3862804
TA10735	mRNA	TA10735	NC_011098.1	1263634	1265628	R	TA10735	complement(join(<1263634..1264983,1265018..1265069,1265387..>1265628))	Theileria annulata	3862653
TA10730	mRNA	TA10730	NC_011098.1	1266233	1267143	D	TA10730	join(<1266233..1266345,1266379..1266426,1266465..1266504,1266538..1266633,1266665..1266796,1266825..1266893,1266922..1266962,1267056..>1267143)	Theileria annulata	3862652
TA10725	mRNA	TA10725	NC_011098.1	1267284	1269943	R	TA10725	complement(join(<1267284..1267472,1267536..1267595,1267709..1267833,1267863..1267946,1268005..>1269943))	Theileria annulata	3862651
TA10720	mRNA	TA10720	NC_011098.1	1270350	1273416	D	TA10720	join(<1270350..1271048,1271148..1271465,1271636..1271833,1271890..>1273416)	Theileria annulata	3862650
TA10715	mRNA	TA10715	NC_011098.1	1273675	1276074	D	TA10715	join(<1273675..1275061,1275092..>1276074)	Theileria annulata	3862649
TA10710	mRNA	TA10710	NC_011098.1	1276257	1281799	D	TA10710	join(<1276257..1276658,1276705..1276939,1276996..1277303,1277377..1277460,1277491..1277674,1277729..1279410,1279466..1279691,1279760..1280280,1280309..1280908,1280958..1281004,1281044..1281368,1281467..>1281799)	Theileria annulata	3862648
TA10705	mRNA	TA10705	NC_011098.1	1281967	1283655	R	TA10705	complement(<1281967..>1283655)	Theileria annulata	3862647
TA10700	mRNA	TA10700	NC_011098.1	1283836	1284876	D	TA10700	join(<1283836..1284139,1284175..1284383,1284414..1284557,1284592..1284641,1284675..>1284876)	Theileria annulata	3862646
TA10695	mRNA	TA10695	NC_011098.1	1284967	1285951	D	TA10695	join(<1284967..1285668,1285712..>1285951)	Theileria annulata	3862645
TA10685	mRNA	TA10685	NC_011098.1	1286019	1286768	D	TA10685	join(<1286019..1286335,1286420..>1286768)	Theileria annulata	3862643
TA10680	mRNA	TA10680	NC_011098.1	1287039	1287404	D	TA10680	join(<1287039..1287309,1287340..>1287404)	Theileria annulata	3862642
TA10675	mRNA	TA10675	NC_011098.1	1287484	1287741	D	TA10675	<1287484..>1287741	Theileria annulata	3862641
TA10670	mRNA	TA10670	NC_011098.1	1287746	1290057	R	TA10670	complement(join(<1287746..1288766,1288856..1289729,1289760..>1290057))	Theileria annulata	3862640
TA10665	mRNA	TA10665	NC_011098.1	1290310	1290989	D	TA10665	join(<1290310..1290413,1290442..1290471,1290501..1290573,1290717..>1290989)	Theileria annulata	3862639
TA10660	mRNA	TA10660	NC_011098.1	1291373	1292794	D	TA10660	<1291373..>1292794	Theileria annulata	3862638
TA10655	mRNA	TA10655	NC_011098.1	1293200	1295863	D	TA10655	<1293200..>1295863	Theileria annulata	3862637
TA10650	mRNA	TA10650	NC_011098.1	1296217	1297725	D	TA10650	<1296217..>1297725	Theileria annulata	3862636
TA10645	mRNA	TA10645	NC_011098.1	1298178	1299725	D	TA10645	<1298178..>1299725	Theileria annulata	3862635
TA10640	mRNA	TA10640	NC_011098.1	1300114	1301547	D	TA10640	<1300114..>1301547	Theileria annulata	3862722
TA10635	mRNA	TA10635	NC_011098.1	1301593	1304315	R	TA10635	complement(join(<1301593..1301769,1301800..1301935,1301974..1302141,1302182..1302231,1302253..1302813,1302843..1302928,1302959..1303025,1303055..1303158,1303204..1303574,1303604..1303748,1303814..>1304315))	Theileria annulata	3862721
TA10630	mRNA	TA10630	NC_011098.1	1304983	1306245	D	TA10630	<1304983..>1306245	Theileria annulata	3862720
TA10625	mRNA	TA10625	NC_011098.1	1306472	1307744	D	TA10625	join(<1306472..1306510,1306548..1306652,1306704..1306841,1306893..1307166,1307219..1307380,1307442..1307573,1307605..>1307744)	Theileria annulata	3862719
TA10620	mRNA	TA10620	NC_011098.1	1307894	1309740	D	TA10620	join(<1307894..1308170,1308214..1308441,1308470..1308690,1308723..1309103,1309134..1309347,1309405..1309487,1309560..1309634,1309672..>1309740)	Theileria annulata	3862718
TA10615	mRNA	TA10615	NC_011098.1	1310079	1310930	D	TA10615	join(<1310079..1310121,1310162..1310289,1310352..>1310930)	Theileria annulata	3862717
TA10610	mRNA	TA10610	NC_011098.1	1311022	1312816	R	TA10610	complement(join(<1311022..1311282,1311313..1311417,1311469..1311717,1311782..1311942,1311976..1312116,1312185..1312448,1312513..>1312816))	Theileria annulata	3862716
TA10605	mRNA	TA10605	NC_011098.1	1313319	1316270	D	TA10605	join(<1313319..1314270,1314301..1314470,1314521..1315169,1315228..>1316270)	Theileria annulata	3862715
TA10600	mRNA	TA10600	NC_011098.1	1316515	1328998	R	TA10600	complement(join(<1316515..1318897,1318975..1319179,1319248..1319643,1319715..1320024,1320108..1321406,1321456..1323679,1323708..1323799,1323826..1324563,1324653..1324983,1325018..1327566,1327620..1327905,1327937..1328065,1328097..1328262,1328293..1328421,1328451..1328837,1328881..>1328998))	Theileria annulata	3862714
TA10595	mRNA	TA10595	NC_011098.1	1329408	1330973	D	TA10595	<1329408..>1330973	Theileria annulata	3862713
TA10590	mRNA	TA10590	NC_011098.1	1331136	1331663	R	TA10590	complement(<1331136..>1331663)	Theileria annulata	3862712
TA10580	mRNA	TA10580	NC_011098.1	1332805	1334373	R	TA10580	complement(join(<1332805..1333688,1333720..1334061,1334092..1334169,1334200..1334248,1334281..>1334373))	Theileria annulata	3862710
TA10575	mRNA	TA10575	NC_011098.1	1335500	1335880	R	TA10575	complement(join(<1335500..1335628,1335669..1335767,1335803..>1335880))	Theileria annulata	3862709
TA10570	mRNA	TA10570	NC_011098.1	1336134	1337473	R	TA10570	complement(join(<1336134..1336314,1336360..1336547,1336597..1336665,1336696..1336791,1336822..1336966,1336998..1337181,1337234..1337335,1337374..>1337473))	Theileria annulata	3862708
TA10565	mRNA	TA10565	NC_011098.1	1337653	1337994	R	TA10565	complement(join(<1337653..1337823,1337860..>1337994))	Theileria annulata	3862707
TA10560	mRNA	TA10560	NC_011098.1	1338227	1339479	D	TA10560	join(<1338227..1338607,1338637..>1339479)	Theileria annulata	3862706
TA10555	mRNA	TA10555	NC_011098.1	1339507	1341098	D	TA10555	join(<1339507..1339778,1339829..1339895,1339925..1340055,1340112..1340204,1340236..1340379,1340410..1340510,1340525..1340627,1340667..1340890,1340983..>1341098)	Theileria annulata	3862705
TA10550	mRNA	TA10550	NC_011098.1	1341185	1343482	D	TA10550	join(<1341185..1341840,1341873..1342068,1342099..1342243,1342275..1342332,1342363..1342466,1342497..1342689,1342732..1342801,1342998..1343133,1343178..1343345,1343376..>1343482)	Theileria annulata	3862704
TA10545	mRNA	TA10545	NC_011098.1	1343910	1344221	D	TA10545	<1343910..>1344221	Theileria annulata	3862703
TA10540	mRNA	TA10540	NC_011098.1	1344356	1345660	D	TA10540	join(<1344356..1344532,1344574..1344852,1344882..1345034,1345063..1345125,1345156..1345231,1345263..1345331,1345362..>1345660)	Theileria annulata	3862692
TA10535	mRNA	TA10535	NC_011098.1	1345977	1346288	D	TA10535	<1345977..>1346288	Theileria annulata	3862691
TA10525	mRNA	TA10525	NC_011098.1	1346491	1348026	R	TA10525	complement(<1346491..>1348026)	Theileria annulata	3862689
TA10520	mRNA	TA10520	NC_011098.1	1349049	1349758	R	TA10520	complement(join(<1349049..1349203,1349233..1349277,1349310..1349457,1349486..>1349758))	Theileria annulata	3862688
TA10515	mRNA	TA10515	NC_011098.1	1350597	1351361	D	TA10515	<1350597..>1351361	Theileria annulata	3862687
TA10510	mRNA	TA10510	NC_011098.1	1351414	1352387	R	TA10510	complement(join(<1351414..1351760,1351791..1351851,1351896..>1352387))	Theileria annulata	3862686
TA10505	mRNA	TA10505	NC_011098.1	1353000	1355120	R	TA10505	complement(<1353000..>1355120)	Theileria annulata	3862685
TA10500	mRNA	TA10500	NC_011098.1	1355825	1358042	R	TA10500	complement(join(<1355825..1356345,1356417..1356581,1356649..1357680,1357755..1357904,1357943..>1358042))	Theileria annulata	3862684
TA10495	mRNA	TA10495	NC_011098.1	1358661	1358969	R	TA10495	complement(<1358661..>1358969)	Theileria annulata	3862683
TA10490	mRNA	TA10490	NC_011098.1	1359613	1361192	D	TA10490	join(<1359613..1359705,1359736..1359830,1360162..1360259,1360289..1360344,1360394..1360719,1360933..1360989,1361021..>1361192)	Theileria annulata	3862682
TA10485	mRNA	TA10485	NC_011098.1	1361502	1362958	R	TA10485	complement(join(<1361502..1361642,1361670..1361789,1362007..1362066,1362109..1362367,1362554..1362649,1362734..1362815,1362853..>1362958))	Theileria annulata	3862681
TA10480	mRNA	TA10480	NC_011098.1	1363885	1364871	R	TA10480	complement(join(<1363885..1364315,1364448..>1364871))	Theileria annulata	3862680
TA10470	mRNA	TA10470	NC_011098.1	1365138	1366127	R	TA10470	complement(<1365138..>1366127)	Theileria annulata	3862678
TA10465	mRNA	TA10465	NC_011098.1	1366906	1367784	D	TA10465	join(<1366906..1366976,1367006..1367146,1367175..>1367784)	Theileria annulata	3862677
TA10460	mRNA	TA10460	NC_011098.1	1368487	1373798	R	TA10460	complement(join(<1368487..1369554,1369728..>1373798))	Theileria annulata	3862676
TA10455	mRNA	TA10455	NC_011098.1	1374518	1375213	D	TA10455	join(<1374518..1374784,1374815..>1375213)	Theileria annulata	3862675
TA10450	mRNA	TA10450	NC_011098.1	1375220	1377280	R	TA10450	complement(join(<1375220..1375642,1375672..1376810,1376842..1376911,1376943..1377000,1377035..1377077,1377112..1377182,1377228..>1377280))	Theileria annulata	3862674
TA10445	mRNA	TA10445	NC_011098.1	1377313	1378502	R	TA10445	complement(join(<1377313..1377447,1377480..1377652,1377682..1377908,1377940..>1378502))	Theileria annulata	3862566
TA10440	mRNA	TA10440	NC_011098.1	1378894	1380867	D	TA10440	join(<1378894..1379969,1380049..1380137,1380170..1380318,1380389..1380523,1380587..1380704,1380749..>1380867)	Theileria annulata	3862565
TA10435	mRNA	TA10435	NC_011098.1	1380933	1383027	R	TA10435	complement(join(<1380933..1381064,1381098..1381397,1381463..1381675,1381705..1381757,1381790..1381984,1382016..1382381,1382411..1382791,1382829..>1383027))	Theileria annulata	3862564
TA10430	mRNA	TA10430	NC_011098.1	1383275	1384270	R	TA10430	complement(join(<1383275..1383495,1383544..1383817,1383849..1383919,1383950..1384205,1384238..>1384270))	Theileria annulata	3862563
TA10425	mRNA	TA10425	NC_011098.1	1384590	1385954	D	TA10425	join(<1384590..1384629,1384666..>1385954)	Theileria annulata	3862562
TA10415	mRNA	TA10415	NC_011098.1	1386119	1386919	D	TA10415	<1386119..>1386919	Theileria annulata	3862560
TA10410	mRNA	TA10410	NC_011098.1	1387173	1392505	D	TA10410	join(<1387173..1387319,1387352..1387652,1387684..1392248,1392278..>1392505)	Theileria annulata	3862559
TA10405	mRNA	TA10405	NC_011098.1	1392544	1393365	D	TA10405	join(<1392544..1392879,1392920..1393190,1393223..>1393365)	Theileria annulata	3862558
TA10400	mRNA	TA10400	NC_011098.1	1393552	1397632	D	TA10400	join(<1393552..1393825,1393859..1394120,1394156..1394316,1394346..1394583,1394615..1395148,1395180..1395332,1395362..1395454,1395485..1395765,1395796..1396164,1396193..1396374,1396407..1396600,1396629..1396824,1396854..1397252,1397282..1397478,1397512..>1397632)	Theileria annulata	3862557
TA10395	mRNA	TA10395	NC_011098.1	1397976	1401257	D	TA10395	<1397976..>1401257	Theileria annulata	3862556
TA10390	mRNA	TA10390	NC_011098.1	1402050	1403963	D	TA10390	join(<1402050..1402706,1402735..1402808,1402839..1403014,1403046..1403116,1403147..1403283,1403315..1403406,1403436..1403554,1403584..1403716,1403749..1403804,1403835..>1403963)	Theileria annulata	3862555
TA10385	mRNA	TA10385	NC_011098.1	1404554	1404904	D	TA10385	<1404554..>1404904	Theileria annulata	3862554
TA10380	mRNA	TA10380	NC_011098.1	1405086	1405590	D	TA10380	join(<1405086..1405224,1405262..>1405590)	Theileria annulata	3862553
TA10375	mRNA	TA10375	NC_011098.1	1405706	1406902	R	TA10375	complement(join(<1405706..1406025,1406056..>1406902))	Theileria annulata	3862552
TA10370	mRNA	TA10370	NC_011098.1	1407802	1409988	D	TA10370	join(<1407802..1408051,1408137..1408422,1408456..1408633,1408665..1408775,1408806..1409190,1409273..1409773,1409804..>1409988)	Theileria annulata	3862551
TA10360	mRNA	TA10360	NC_011098.1	1409999	1410696	R	TA10360	complement(join(<1409999..1410412,1410442..1410585,1410616..>1410696))	Theileria annulata	3862549
TA10355	mRNA	TA10355	NC_011098.1	1411125	1414027	D	TA10355	join(<1411125..1411403,1411434..1413738,1413777..1413931,1413962..>1414027)	Theileria annulata	3862548
TA10350	mRNA	TA10350	NC_011098.1	1414076	1414809	R	TA10350	complement(join(<1414076..1414524,1414563..>1414809))	Theileria annulata	3862547
TA10345	mRNA	TA10345	NC_011098.1	1415033	1416223	D	TA10345	<1415033..>1416223	Theileria annulata	3862634
TA10340	mRNA	TA10340	NC_011098.1	1416393	1417965	R	TA10340	complement(join(<1416393..1416476,1416506..1416687,1416718..1416809,1416839..1416943,1416973..1417323,1417357..1417419,1417449..1417548,1417578..>1417965))	Theileria annulata	3862633
TA10335	mRNA	TA10335	NC_011098.1	1418378	1419310	D	TA10335	<1418378..>1419310	Theileria annulata	3862632
TA10330	mRNA	TA10330	NC_011098.1	1419350	1420170	R	TA10330	complement(join(<1419350..1419497,1419529..1419664,1419694..1419968,1420001..>1420170))	Theileria annulata	3862631
TA10325	mRNA	TA10325	NC_011098.1	1420609	1421886	D	TA10325	join(<1420609..1421487,1421518..1421583,1421615..1421781,1421814..>1421886)	Theileria annulata	3862630
TA10320	mRNA	TA10320	NC_011098.1	1422181	1422595	D	TA10320	join(<1422181..1422318,1422432..1422512,1422542..>1422595)	Theileria annulata	3862629
TA10315	mRNA	TA10315	NC_011098.1	1422781	1424172	R	TA10315	complement(<1422781..>1424172)	Theileria annulata	3862628
TA10300	mRNA	TA10300	NC_011098.1	1424497	1425737	R	TA10300	complement(join(<1424497..1425365,1425395..>1425737))	Theileria annulata	3862625
TA10295	mRNA	TA10295	NC_011098.1	1425925	1428344	D	TA10295	join(<1425925..1426048,1426084..>1428344)	Theileria annulata	3862624
TA10290	mRNA	TA10290	NC_011098.1	1428513	1429382	R	TA10290	complement(join(<1428513..1428602,1428633..1428748,1428780..1428930,1428961..1429079,1429109..1429241,1429302..>1429382))	Theileria annulata	3862623
TA10285	mRNA	TA10285	NC_011098.1	1429628	1430893	D	TA10285	join(<1429628..1430194,1430233..1430478,1430511..1430546,1430579..1430648,1430676..>1430893)	Theileria annulata	3862622
TA10280	mRNA	TA10280	NC_011098.1	1431340	1434150	D	TA10280	<1431340..>1434150	Theileria annulata	3862621
TA10275	mRNA	TA10275	NC_011098.1	1434246	1435794	R	TA10275	complement(join(<1434246..1434502,1434587..1435413,1435445..>1435794))	Theileria annulata	3862620
TA10270	mRNA	TA10270	NC_011098.1	1435800	1436894	R	TA10270	complement(join(<1435800..1436580,1436632..>1436894))	Theileria annulata	3862619
TA10265	mRNA	TA10265	NC_011098.1	1437038	1438455	R	TA10265	complement(join(<1437038..1437124,1437159..1437410,1437443..1437571,1437604..1437714,1437759..1437909,1437940..1438232,1438263..1438359,1438397..>1438455))	Theileria annulata	3862618
TA10260	mRNA	TA10260	NC_011098.1	1438741	1441842	D	TA10260	<1438741..>1441842	Theileria annulata	3862617
TA10255	mRNA	TA10255	NC_011098.1	1442072	1442403	D	TA10255	join(<1442072..1442185,1442269..>1442403)	Theileria annulata	3862616
TA10250	mRNA	TA10250	NC_011098.1	1442480	1442952	R	TA10250	complement(join(<1442480..1442614,1442659..1442760,1442827..>1442952))	Theileria annulata	3862546
TA10245	mRNA	TA10245	NC_011098.1	1443028	1445450	R	TA10245	complement(join(<1443028..1443165,1443197..1443607,1443728..1443881,1443911..1443981,1444039..1444119,1444149..1444238,1444268..1444472,1444502..1444573,1444604..1444704,1444734..1445127,1445158..>1445450))	Theileria annulata	3862545
TA10240	mRNA	TA10240	NC_011098.1	1445904	1448723	D	TA10240	<1445904..>1448723	Theileria annulata	3862544
TA10235	mRNA	TA10235	NC_011098.1	1448831	1452092	R	TA10235	complement(join(<1448831..1449190,1449281..1449790,1449947..1451457,1451614..1451831,1451866..>1452092))	Theileria annulata	3862543
TA10230	mRNA	TA10230	NC_011098.1	1452861	1456304	D	TA10230	join(<1452861..1453814,1453852..1454372,1454409..1454631,1454702..1455897,1455992..>1456304)	Theileria annulata	3862542
TA10225	mRNA	TA10225	NC_011098.1	1456922	1458590	R	TA10225	complement(join(<1456922..1457284,1457484..1457658,1457702..1457835,1457867..1457919,1457949..1458084,1458115..1458163,1458202..1458243,1458275..1458325,1458391..>1458590))	Theileria annulata	3862541
TA10220	mRNA	TA10220	NC_011098.1	1458797	1460437	D	TA10220	join(<1458797..1459075,1459107..1459304,1459334..1459486,1459517..1459625,1459655..1459726,1459792..1459968,1459999..1460045,1460088..1460117,1460148..1460302,1460335..>1460437)	Theileria annulata	3862540
TA10215	mRNA	TA10215	NC_011098.1	1460464	1461201	D	TA10215	join(<1460464..1460530,1460561..>1461201)	Theileria annulata	3862539
TA10210	mRNA	TA10210	NC_011098.1	1461282	1461785	D	TA10210	<1461282..>1461785	Theileria annulata	3862538
TA10205	mRNA	TA10205	NC_011098.1	1461814	1463264	R	TA10205	complement(join(<1461814..1462017,1462070..1462229,1462259..1462514,1462590..1462832,1462901..>1463264))	Theileria annulata	3862537
TA10190	mRNA	TA10190	NC_011098.1	1463422	1465410	R	TA10190	complement(<1463422..>1465410)	Theileria annulata	3862534
TA10185	mRNA	TA10185	NC_011098.1	1465892	1466864	R	TA10185	complement(join(<1465892..1466650,1466799..>1466864))	Theileria annulata	3862533
TA10180	mRNA	TA10180	NC_011098.1	1467328	1467662	R	TA10180	complement(join(<1467328..1467383,1467437..>1467662))	Theileria annulata	3862532
TA10175	mRNA	TA10175	NC_011098.1	1467938	1468653	D	TA10175	join(<1467938..1468001,1468142..>1468653)	Theileria annulata	3862531
TA10170	mRNA	TA10170	NC_011098.1	1468866	1471805	D	TA10170	join(<1468866..1468925,1468969..1469139,1469194..1469308,1469365..1469436,1469468..1469991,1470033..1470163,1470199..1470339,1470389..1470596,1470653..1470776,1470811..1470920,1471006..1471060,1471089..1471192,1471250..1471381,1471437..1471691,1471767..>1471805)	Theileria annulata	3862530
TA10165	mRNA	TA10165	NC_011098.1	1471871	1474624	D	TA10165	<1471871..>1474624	Theileria annulata	3862529
TA10160	mRNA	TA10160	NC_011098.1	1474697	1475185	R	TA10160	complement(<1474697..>1475185)	Theileria annulata	3862528
TA10155	mRNA	TA10155	NC_011098.1	1475733	1478870	D	TA10155	join(<1475733..1475807,1475884..1476208,1476245..1476403,1476465..1477054,1477237..1477445,1477481..1478269,1478304..1478393,1478426..>1478870)	Theileria annulata	3862527
TA10150	mRNA	TA10150	NC_011098.1	1479097	1480022	R	TA10150	complement(join(<1479097..1479177,1479210..1479308,1479340..1479425,1479461..1479607,1479675..1479824,1479884..>1480022))	Theileria annulata	3863349
TA10145	mRNA	TA10145	NC_011098.1	1480388	1484481	D	TA10145	join(<1480388..1480427,1480507..1480626,1480691..>1484481)	Theileria annulata	3863348
TA10140	mRNA	TA10140	NC_011098.1	1484594	1485919	D	TA10140	join(<1484594..1484659,1484743..1484861,1484975..1485155,1485220..1485405,1485473..>1485919)	Theileria annulata	3863347
TA10135	mRNA	TA10135	NC_011098.1	1485976	1488115	D	TA10135	join(<1485976..1486075,1486165..1486301,1486688..1486888,1486930..1487267,1487327..1487425,1487460..1487526,1487557..1487697,1487726..1487827,1487857..1487940,1487975..>1488115)	Theileria annulata	3863346
TA10130	mRNA	TA10130	NC_011098.1	1488203	1490108	R	TA10130	complement(join(<1488203..1488502,1488534..1488575,1488633..1488749,1488783..1488838,1488873..1488968,1489000..1489077,1489137..1489293,1489378..1489500,1489530..1489649,1489752..1489951,1489991..>1490108))	Theileria annulata	3863345
TA10125	mRNA	TA10125	NC_011098.1	1490416	1492833	R	TA10125	complement(join(<1490416..1491062,1491133..1491247,1491277..1491395,1491454..1491672,1491730..1491906,1491968..1492157,1492192..1492474,1492550..1492644,1492786..>1492833))	Theileria annulata	3863344
TA10120	mRNA	TA10120	NC_011098.1	1492987	1494765	R	TA10120	complement(<1492987..>1494765)	Theileria annulata	3863343
TA10115	mRNA	TA10115	NC_011098.1	1495111	1495921	R	TA10115	complement(join(<1495111..1495216,1495344..1495444,1495484..1495825,1495856..>1495921))	Theileria annulata	3863342
TA10110	mRNA	TA10110	NC_011098.1	1496333	1497249	D	TA10110	join(<1496333..1496696,1496780..1497007,1497122..>1497249)	Theileria annulata	3863341
TA10105	mRNA	TA10105	NC_011098.1	1497443	1498466	R	TA10105	complement(join(<1497443..1497621,1497656..1497728,1497758..1497811,1497840..1497914,1497947..1498010,1498099..1498208,1498250..1498317,1498391..>1498466))	Theileria annulata	3863340
TA10100	mRNA	TA10100	NC_011098.1	1499235	1500952	R	TA10100	complement(join(<1499235..1500040,1500110..1500260,1500307..1500470,1500500..1500577,1500610..>1500952))	Theileria annulata	3863339
TA10095	mRNA	TA10095	NC_011098.1	1501258	1503100	R	TA10095	complement(join(<1501258..1502253,1502284..1502309,1502342..1502396,1502427..1502624,1502702..1502930,1502988..>1503100))	Theileria annulata	3863338
TA10080	mRNA	TA10080	NC_011098.1	1503159	1504623	D	TA10080	join(<1503159..1503263,1503460..1503573,1503603..1503788,1503819..1504068,1504099..1504158,1504187..1504284,1504315..>1504623)	Theileria annulata	3863335
TA10075	mRNA	TA10075	NC_011098.1	1504721	1505956	R	TA10075	complement(join(<1504721..1504866,1504896..1504943,1504973..1505144,1505174..1505244,1505274..1505363,1505393..1505512,1505555..1505767,1505818..>1505956))	Theileria annulata	3863334
TA10070	mRNA	TA10070	NC_011098.1	1506137	1506792	D	TA10070	join(<1506137..1506189,1506229..1506283,1506316..1506382,1506416..1506445,1506477..1506581,1506611..>1506792)	Theileria annulata	3863333
TA10065	mRNA	TA10065	NC_011098.1	1506868	1507341	R	TA10065	complement(join(<1506868..1507265,1507311..>1507341))	Theileria annulata	3863332
TA10060	mRNA	TA10060	NC_011098.1	1508708	1510376	R	TA10060	complement(join(<1508708..1508857,1508887..1509234,1509265..1509571,1509604..1509681,1509718..1509883,1509916..1509987,1510025..1510092,1510114..1510237,1510346..>1510376))	Theileria annulata	3863331
TA10055	mRNA	TA10055	NC_011098.1	1511305	1512855	D	TA10055	<1511305..>1512855	Theileria annulata	3863330
TA10050	mRNA	TA10050	NC_011098.1	1513132	1515244	D	TA10050	join(<1513132..1513197,1513288..1513494,1513534..1513617,1513648..1513740,1513771..1513902,1513935..1514042,1514074..1514151,1514182..1514436,1514465..1514574,1514605..1514718,1514750..1515042,1515072..>1515244)	Theileria annulata	3863329
TA10045	mRNA	TA10045	NC_011098.1	1515780	1517610	D	TA10045	join(<1515780..1517102,1517134..>1517610)	Theileria annulata	3863328
TA10040	mRNA	TA10040	NC_011098.1	1517659	1519115	R	TA10040	complement(join(<1517659..1518032,1518062..1518195,1518225..1518385,1518416..1518501,1518531..1518689,1518721..1518835,1518933..>1519115))	Theileria annulata	3863327
TA10035	mRNA	TA10035	NC_011098.1	1519377	1522719	D	TA10035	join(<1519377..1519763,1519801..1520015,1520046..1520145,1520178..1520213,1520243..1520840,1520876..1521017,1521057..1521886,1521922..1522082,1522111..1522179,1522208..1522327,1522357..1522406,1522435..1522475,1522529..>1522719)	Theileria annulata	3863326
TA10025	mRNA	TA10025	NC_011098.1	1522742	1523455	R	TA10025	complement(join(<1522742..1523394,1523434..>1523455))	Theileria annulata	3863324
TA10020	mRNA	TA10020	NC_011098.1	1523707	1526455	D	TA10020	join(<1523707..1524477,1524509..1524678,1524711..1525098,1525129..1525213,1525244..1525450,1525482..1525526,1525558..1525778,1525810..1525957,1525999..1526110,1526140..>1526455)	Theileria annulata	3863323
TA10015	mRNA	TA10015	NC_011098.1	1526889	1527520	R	TA10015	complement(join(<1526889..1527037,1527136..1527289,1527371..>1527520))	Theileria annulata	3863322
TA10010	mRNA	TA10010	NC_011098.1	1527620	1529776	R	TA10010	complement(join(<1527620..1527790,1527821..1527910,1527941..1527965,1527989..1528041,1528071..1528289,1528321..1528434,1528466..1528588,1528623..1528815,1528880..1529043,1529168..1529355,1529393..1529572,1529677..>1529776))	Theileria annulata	3863321
TA10005	mRNA	TA10005	NC_011098.1	1529914	1530957	R	TA10005	complement(join(<1529914..1530158,1530188..1530423,1530453..1530582,1530614..1530679,1530718..1530814,1530847..>1530957))	Theileria annulata	3863320
TA10000	mRNA	TA10000	NC_011098.1	1531327	1536111	R	TA10000	complement(<1531327..>1536111)	Theileria annulata	3863319
TA09995	mRNA	TA09995	NC_011098.1	1536628	1539483	D	TA09995	<1536628..>1539483	Theileria annulata	3863318
TA09990	mRNA	TA09990	NC_011098.1	1539629	1540780	R	TA09990	complement(join(<1539629..1540470,1540507..>1540780))	Theileria annulata	3863317
TA09985	mRNA	TA09985	NC_011098.1	1541493	1543950	R	TA09985	complement(join(<1541493..1542023,1542055..1542141,1542171..1542833,1542867..1542940,1542970..1543292,1543326..1543389,1543421..1543640,1543674..1543799,1543837..>1543950))	Theileria annulata	3863316
TA09980	mRNA	TA09980	NC_011098.1	1544576	1546257	D	TA09980	join(<1544576..1544671,1544703..1544782,1544826..1544892,1544915..1544999,1545029..1545193,1545229..1545296,1545326..1545431,1545462..1545625,1545666..1545718,1545748..1545871,1545901..1545944,1545976..1546078,1546108..>1546257)	Theileria annulata	3863315
TA09970	mRNA	TA09970	NC_011098.1	1546441	1547395	R	TA09970	complement(join(<1546441..1546509,1546543..1546618,1546649..1546785,1546843..1546917,1546954..1547042,1547081..1547166,1547199..>1547395))	Theileria annulata	3863313
TA09965	mRNA	TA09965	NC_011098.1	1547461	1548663	R	TA09965	complement(<1547461..>1548663)	Theileria annulata	3863312
TA09960	mRNA	TA09960	NC_011098.1	1549672	1551513	R	TA09960	complement(join(<1549672..1550131,1550171..1550337,1550367..1550585,1550615..1550739,1550775..1550921,1550956..1551004,1551034..>1551513))	Theileria annulata	3863311
TA09955	mRNA	TA09955	NC_011098.1	1552033	1552520	R	TA09955	complement(join(<1552033..1552110,1552150..1552236,1552277..1552433,1552489..>1552520))	Theileria annulata	3863115
TA09950	mRNA	TA09950	NC_011098.1	1552551	1554349	R	TA09950	complement(join(<1552551..1553088,1553121..1553262,1553332..1553430,1553451..1553755,1553787..1553861,1553891..1554011,1554043..1554117,1554157..>1554349))	Theileria annulata	3863114
TA09945	mRNA	TA09945	NC_011098.1	1554848	1555750	D	TA09945	join(<1554848..1555022,1555053..1555334,1555364..1555480,1555512..>1555750)	Theileria annulata	3863113
TA09940	mRNA	TA09940	NC_011098.1	1555762	1556933	R	TA09940	complement(join(<1555762..1556148,1556179..1556288,1556318..1556441,1556475..1556674,1556719..1556760,1556840..>1556933))	Theileria annulata	3863112
TA09935	mRNA	TA09935	NC_011098.1	1556960	1561653	R	TA09935	complement(join(<1556960..1557106,1557141..1557196,1557232..1557333,1557367..1557453,1557488..1557998,1558027..1558136,1558168..1558311,1558341..1558448,1558583..1558657,1558687..1558846,1558881..1558932,1558972..1559236,1559268..1559351,1559469..1559712,1559744..1559844,1559876..1559937,1559970..1560036,1560068..1560109,1560139..1560207,1560237..1560302,1560335..1560483,1560513..1561103,1561186..1561217,1561312..1561518,1561591..>1561653))	Theileria annulata	3863111
TA09930	mRNA	TA09930	NC_011098.1	1561743	1563173	R	TA09930	complement(join(<1561743..1561920,1561952..1561989,1562022..1562236,1562268..1562373,1562403..1562456,1562492..1562643,1562678..1562816,1562856..>1563173))	Theileria annulata	3863110
TA09925	mRNA	TA09925	NC_011098.1	1563984	1564881	D	TA09925	join(<1563984..1564300,1564331..1564638,1564670..>1564881)	Theileria annulata	3863109
TA09915	mRNA	TA09915	NC_011098.1	1564959	1565639	R	TA09915	complement(join(<1564959..1565341,1565381..>1565639))	Theileria annulata	3863107
TA09910	mRNA	TA09910	NC_011098.1	1565760	1568745	R	TA09910	complement(join(<1565760..1565958,1566015..1566890,1566920..1567059,1567091..1567203,1567235..1567379,1567410..1567763,1567793..1568298,1568328..>1568745))	Theileria annulata	3863106
TA09905	mRNA	TA09905	NC_011098.1	1568988	1570737	R	TA09905	complement(join(<1568988..1570141,1570194..>1570737))	Theileria annulata	3863105
TA09900	mRNA	TA09900	NC_011098.1	1570881	1571570	R	TA09900	complement(join(<1570881..1571011,1571044..1571128,1571168..1571320,1571352..>1571570))	Theileria annulata	3863104
TA09895	mRNA	TA09895	NC_011098.1	1571812	1573286	R	TA09895	complement(join(<1571812..1572036,1572068..1572173,1572205..1572298,1572312..1572545,1572578..1572821,1572852..>1573286))	Theileria annulata	3863103
TA09890	mRNA	TA09890	NC_011098.1	1574506	1585798	D	TA09890	join(<1574506..1575205,1575240..1577590,1577621..1578523,1578616..1581402,1581436..1581639,1581735..1584958,1585051..1585171,1585204..1585563,1585661..>1585798)	Theileria annulata	3863102
TA09885	mRNA	TA09885	NC_011098.1	1585920	1586935	R	TA09885	complement(join(<1585920..1586590,1586641..>1586935))	Theileria annulata	3863101
TA09880	mRNA	TA09880	NC_011098.1	1587056	1588914	R	TA09880	complement(join(<1587056..1587133,1587163..1587254,1587305..1587683,1587741..1587839,1587898..>1588914))	Theileria annulata	3863100
TA09875	mRNA	TA09875	NC_011098.1	1589633	1591436	D	TA09875	join(<1589633..1589817,1589853..1591045,1591192..>1591436)	Theileria annulata	3863099
TA09870	mRNA	TA09870	NC_011098.1	1591983	1595051	D	TA09870	<1591983..>1595051	Theileria annulata	3863098
TA09860	mRNA	TA09860	NC_011098.1	1595198	1597465	R	TA09860	complement(join(<1595198..1595448,1595484..1595594,1595629..1595716,1595749..1596036,1596103..1596165,1596195..1596368,1596398..1596498,1596576..1596823,1596855..1597146,1597239..1597298,1597360..>1597465))	Theileria annulata	3863310
TA09855	mRNA	TA09855	NC_011098.1	1597661	1599351	R	TA09855	complement(join(<1597661..1597783,1597846..1598127,1598157..1598273,1598303..1598369,1598399..1598445,1598508..1598601,1598631..1598747,1598778..1598895,1598925..1599061,1599112..1599197,1599238..>1599351))	Theileria annulata	3863309
TA09850	mRNA	TA09850	NC_011098.1	1599799	1603080	D	TA09850	join(<1599799..1602921,1602952..>1603080)	Theileria annulata	3863308
TA09845	mRNA	TA09845	NC_011098.1	1603114	1603939	D	TA09845	join(<1603114..1603215,1603245..1603331,1603385..1603547,1603608..>1603939)	Theileria annulata	3863307
TA09840	mRNA	TA09840	NC_011098.1	1604257	1612634	D	TA09840	join(<1604257..1607233,1607336..1608540,1608648..1609080,1609279..1609426,1609533..1609686,1609762..1609968,1610168..1610259,1610355..1610535,1610688..1610972,1611122..1611301,1611442..1611645,1611849..1611997,1612217..>1612634)	Theileria annulata	3863306
TA09835	mRNA	TA09835	NC_011098.1	1613989	1614635	R	TA09835	complement(join(<1613989..1614043,1614072..1614171,1614284..1614323,1614359..1614421,1614540..>1614635))	Theileria annulata	3863305
TA09830	mRNA	TA09830	NC_011098.1	1614722	1616398	D	TA09830	join(<1614722..1614891,1614923..1615112,1615144..1615197,1615275..1615335,1615367..1615406,1615438..1615455,1615599..1615627,1615661..1615712,1615848..1615910,1615943..1615971,1616000..1616076,1616104..1616182,1616271..>1616398)	Theileria annulata	3863304
TA09825	mRNA	TA09825	NC_011098.1	1616509	1617051	R	TA09825	complement(<1616509..>1617051)	Theileria annulata	3863303
TA09820	mRNA	TA09820	NC_011098.1	1617170	1619123	D	TA09820	join(<1617170..1617245,1617357..1617554,1617586..1617709,1617749..1617786,1617811..1617846,1617864..1617880,1617915..1618006,1618149..1618339,1618451..1618553,1618584..1618833,1618866..1619031,1619062..>1619123)	Theileria annulata	3863302
TA09815	mRNA	TA09815	NC_011098.1	1619432	1621108	R	TA09815	complement(<1619432..>1621108)	Theileria annulata	3863301
TA11380	mRNA	TA11380	NC_011098.1	1621634	1623905	R	TA11380	complement(join(<1621634..1621810,1622023..1622307,1622398..1622451,1622603..1622863,1622980..1623461,1623557..>1623905))	Theileria annulata	3862932
TA11375	mRNA	TA11375	NC_011098.1	1624021	1626710	D	TA11375	join(<1624021..1626268,1626418..>1626710)	Theileria annulata	3862931
TA11370	mRNA	TA11370	NC_011098.1	1626873	1628377	D	TA11370	join(<1626873..1627219,1627257..1627483,1627515..1627645,1627675..1627713,1627745..1627885,1628056..1628279,1628311..>1628377)	Theileria annulata	3862930
TA11365	mRNA	TA11365	NC_011098.1	1628724	1629661	R	TA11365	complement(join(<1628724..1629070,1629236..1629414,1629516..>1629661))	Theileria annulata	3862929
TA11360	mRNA	TA11360	NC_011098.1	1629954	1633662	R	TA11360	complement(join(<1629954..1630122,1630220..1631872,1632131..>1633662))	Theileria annulata	3862928
TA11355	mRNA	TA11355	NC_011098.1	1634003	1634959	D	TA11355	join(<1634003..1634010,1634110..1634216,1634315..1634398,1634453..1634489,1634575..1634689,1634722..1634811,1634903..>1634959)	Theileria annulata	3862927
TA11350	mRNA	TA11350	NC_011098.1	1635198	1636165	R	TA11350	complement(join(<1635198..1635431,1635568..1635741,1635809..>1636165))	Theileria annulata	3862926
TA11345	mRNA	TA11345	NC_011098.1	1636545	1637708	D	TA11345	join(<1636545..1636714,1636776..1636863,1637061..1637150,1637246..1637395,1637496..>1637708)	Theileria annulata	3862925
TA11340	mRNA	TA11340	NC_011098.1	1637862	1639386	D	TA11340	join(<1637862..1638130,1638198..1638303,1638367..1638412,1638441..1638527,1638805..1638986,1639186..1639284,1639315..>1639386)	Theileria annulata	3862924
TA11335	mRNA	TA11335	NC_011098.1	1639545	1639937	R	TA11335	complement(<1639545..>1639937)	Theileria annulata	3862923
TA11330	mRNA	TA11330	NC_011098.1	1640030	1642990	R	TA11330	complement(join(<1640030..1642471,1642567..1642750,1642854..>1642990))	Theileria annulata	3862922
TA11325	mRNA	TA11325	NC_011098.1	1643152	1643972	R	TA11325	complement(join(<1643152..1643201,1643264..1643367,1643449..1643733,1643869..>1643972))	Theileria annulata	3862921
TA11320	mRNA	TA11320	NC_011098.1	1644191	1645000	D	TA11320	<1644191..>1645000	Theileria annulata	3862920
TA11315	mRNA	TA11315	NC_011098.1	1645201	1646547	D	TA11315	join(<1645201..1645555,1645676..1646093,1646123..1646262,1646294..>1646547)	Theileria annulata	3862919
TA11310	mRNA	TA11310	NC_011098.1	1647717	1650032	D	TA11310	<1647717..>1650032	Theileria annulata	3862918
TA11305	mRNA	TA11305	NC_011098.1	1650085	1650463	R	TA11305	complement(join(<1650085..1650353,1650388..>1650463))	Theileria annulata	3862917
TA11300	mRNA	TA11300	NC_011098.1	1650937	1652433	D	TA11300	join(<1650937..1651564,1651691..>1652433)	Theileria annulata	3862916
TA11295	mRNA	TA11295	NC_011098.1	1652558	1653750	D	TA11295	join(<1652558..1652965,1652996..1653148,1653178..1653237,1653268..1653438,1653469..1653546,1653580..>1653750)	Theileria annulata	3862914
TA11297	mRNA	TA11297	NC_011098.1	1653826	1654296	D	TA11297	<1653826..>1654296	Theileria annulata	3862915
TA11285	mRNA	TA11285	NC_011098.1	1656454	1657431	D	TA11285	join(<1656454..1656503,1656535..1656757,1656787..1656834,1657106..1657201,1657231..>1657431)	Theileria annulata	3862913
TA11280	mRNA	TA11280	NC_011098.1	1658050	1659204	D	TA11280	join(<1658050..1658254,1658293..1658463,1658496..1658582,1658611..1658680,1658713..1658759,1658794..1658838,1658873..>1659204)	Theileria annulata	3862912
TA11275	mRNA	TA11275	NC_011098.1	1659278	1660478	D	TA11275	join(<1659278..1659593,1659624..1659964,1659995..1660098,1660164..1660325,1660409..>1660478)	Theileria annulata	3862911
TA11270	mRNA	TA11270	NC_011098.1	1660768	1661417	R	TA11270	complement(join(<1660768..1660927,1660999..>1661417))	Theileria annulata	3862910
TA11265	mRNA	TA11265	NC_011098.1	1662182	1664055	D	TA11265	join(<1662182..1663264,1663332..1663414,1663447..1663587,1663620..>1664055)	Theileria annulata	3862909
TA11260	mRNA	TA11260	NC_011098.1	1664312	1665172	D	TA11260	<1664312..>1665172	Theileria annulata	3862908
TA11255	mRNA	TA11255	NC_011098.1	1665211	1666723	R	TA11255	complement(join(<1665211..1665317,1665388..1665493,1665522..1665582,1665612..1665676,1665708..1665747,1665779..1665848,1665879..1665930,1665960..1666100,1666129..1666406,1666445..1666606,1666660..>1666723))	Theileria annulata	3862907
TA11250	mRNA	TA11250	NC_011098.1	1667086	1668659	D	TA11250	join(<1667086..1667461,1667494..1667705,1667738..1667882,1667913..1668033,1668074..1668188,1668219..>1668659)	Theileria annulata	3862906
TA11245	mRNA	TA11245	NC_011098.1	1668737	1669570	R	TA11245	complement(<1668737..>1669570)	Theileria annulata	3862905
TA11240	mRNA	TA11240	NC_011098.1	1670610	1671809	D	TA11240	join(<1670610..1671164,1671194..1671237,1671276..1671300,1671330..1671434,1671465..1671556,1671596..>1671809)	Theileria annulata	3862904
TA11235	mRNA	TA11235	NC_011098.1	1671876	1673118	R	TA11235	complement(join(<1671876..1672148,1672177..1672287,1672317..1672379,1672409..1672549,1672580..1672755,1672792..1672881,1672917..>1673118))	Theileria annulata	3862903
TA11230	mRNA	TA11230	NC_011098.1	1673203	1675374	D	TA11230	join(<1673203..1673546,1673582..1673721,1673753..1673967,1674003..1674142,1674175..1674297,1674327..1674451,1674511..1674600,1674630..1675212,1675242..>1675374)	Theileria annulata	3862902
TA11225	mRNA	TA11225	NC_011098.1	1675385	1676671	R	TA11225	complement(<1675385..>1676671)	Theileria annulata	3862901
TA11220	mRNA	TA11220	NC_011098.1	1676792	1678943	R	TA11220	complement(join(<1676792..1676972,1677002..1677103,1677133..1677489,1677521..1677660,1677693..1678472,1678508..1678716,1678802..>1678943))	Theileria annulata	3862900
TA11215	mRNA	TA11215	NC_011098.1	1679253	1680005	D	TA11215	<1679253..>1680005	Theileria annulata	3862899
TA11210	mRNA	TA11210	NC_011098.1	1680110	1680433	D	TA11210	<1680110..>1680433	Theileria annulata	3862898
TA11205	mRNA	TA11205	NC_011098.1	1680475	1681182	R	TA11205	complement(<1680475..>1681182)	Theileria annulata	3862897
TA11200	mRNA	TA11200	NC_011098.1	1681725	1682546	D	TA11200	join(<1681725..1681881,1681915..1682039,1682079..1682156,1682194..1682283,1682312..1682406,1682435..>1682546)	Theileria annulata	3862896
TA11195	mRNA	TA11195	NC_011098.1	1682573	1682798	D	TA11195	join(<1682573..1682691,1682726..>1682798)	Theileria annulata	3862895
TA11190	mRNA	TA11190	NC_011098.1	1683144	1685136	D	TA11190	join(<1683144..1683237,1683272..1683573,1683612..1683728,1683760..1684314,1684344..1684383,1684413..1684831,1684861..>1685136)	Theileria annulata	3862894
TA11185	mRNA	TA11185	NC_011098.1	1685197	1685799	R	TA11185	complement(<1685197..>1685799)	Theileria annulata	3862893
TA11180	mRNA	TA11180	NC_011098.1	1686027	1686656	R	TA11180	complement(<1686027..>1686656)	Theileria annulata	3862892
TA11175	mRNA	TA11175	NC_011098.1	1688067	1688919	D	TA11175	join(<1688067..1688290,1688322..1688403,1688515..>1688919)	Theileria annulata	3862891
TA11170	mRNA	TA11170	NC_011098.1	1689112	1693032	R	TA11170	complement(join(<1689112..1689327,1689362..1692199,1692230..1692608,1692647..>1693032))	Theileria annulata	3862890
TA11165	mRNA	TA11165	NC_011098.1	1693263	1693781	D	TA11165	<1693263..>1693781	Theileria annulata	3862889
TA11160	mRNA	TA11160	NC_011098.1	1693824	1698230	R	TA11160	complement(<1693824..>1698230)	Theileria annulata	3862888
TA11155	mRNA	TA11155	NC_011098.1	1700159	1702003	R	TA11155	complement(<1700159..>1702003)	Theileria annulata	3862887
TA11150	mRNA	TA11150	NC_011098.1	1702293	1704692	R	TA11150	complement(join(<1702293..1702622,1702653..1702751,1702829..1703190,1703221..1703378,1703451..1703507,1703538..1703614,1703645..1703791,1703822..1704109,1704142..1704271,1704314..1704422,1704457..1704544,1704648..>1704692))	Theileria annulata	3862886
TA11145	mRNA	TA11145	NC_011098.1	1704930	1706666	R	TA11145	complement(<1704930..>1706666)	Theileria annulata	3862885
TA11140	mRNA	TA11140	NC_011098.1	1708188	1710490	R	TA11140	complement(join(<1708188..1708602,1708634..1708777,1708809..1708931,1708963..1709316,1709346..1709405,1709436..1709475,1709505..1709605,1709641..1709863,1709917..1710056,1710087..>1710490))	Theileria annulata	3862884
TA11135	mRNA	TA11135	NC_011098.1	1710996	1716715	D	TA11135	join(<1710996..1711356,1711386..1711510,1711540..1711652,1711686..1711794,1711826..>1716715)	Theileria annulata	3862883
TA11130	mRNA	TA11130	NC_011098.1	1718516	1720475	D	TA11130	join(<1718516..1719184,1719255..1719437,1719469..1719597,1719681..1720016,1720060..1720334,1720367..>1720475)	Theileria annulata	3862882
TA11125	mRNA	TA11125	NC_011098.1	1720594	1722055	R	TA11125	complement(join(<1720594..1720842,1720877..1721112,1721185..>1722055))	Theileria annulata	3862881
TA11120	mRNA	TA11120	NC_011098.1	1722298	1724585	D	TA11120	join(<1722298..1723654,1723702..>1724585)	Theileria annulata	3862880
TA11115	mRNA	TA11115	NC_011098.1	1724820	1726806	D	TA11115	join(<1724820..1724972,1725040..1725179,1725211..1725335,1725364..1725744,1725815..1725932,1725974..1726327,1726361..1726524,1726559..>1726806)	Theileria annulata	3862879
TA11110	mRNA	TA11110	NC_011098.1	1727164	1728467	D	TA11110	join(<1727164..1727255,1727326..1727509,1727540..1727608,1727639..1727767,1727792..1728102,1728145..1728205,1728233..1728329,1728358..>1728467)	Theileria annulata	3862878
TA11105	mRNA	TA11105	NC_011098.1	1728514	1732114	R	TA11105	complement(join(<1728514..1730738,1730827..>1732114))	Theileria annulata	3862877
TA11100	mRNA	TA11100	NC_011098.1	1733167	1737728	D	TA11100	join(<1733167..1736085,1736165..1736795,1736855..1737045,1737075..1737200,1737273..1737397,1737432..1737551,1737641..>1737728)	Theileria annulata	3862876
TA11095	mRNA	TA11095	NC_011098.1	1738307	1739494	D	TA11095	<1738307..>1739494	Theileria annulata	3862875
TA11090	mRNA	TA11090	NC_011098.1	1739780	1742634	D	TA11090	join(<1739780..1742165,1742237..>1742634)	Theileria annulata	3862874
TA11085	mRNA	TA11085	NC_011098.1	1742715	1746425	R	TA11085	complement(join(<1742715..1743054,1743086..1743865,1743896..1744714,1744773..1744844,1744873..1744964,1745033..1745181,1745251..1745342,1745378..1745601,1745631..1745677,1745708..1745981,1746065..1746146,1746217..>1746425))	Theileria annulata	3862873
TA11080	mRNA	TA11080	NC_011098.1	1746437	1747096	R	TA11080	complement(<1746437..>1747096)	Theileria annulata	3862872
TA11075	mRNA	TA11075	NC_011098.1	1747888	1748494	R	TA11075	complement(join(<1747888..1748046,1748152..1748255,1748368..>1748494))	Theileria annulata	3862871
TA11070	mRNA	TA11070	NC_011098.1	1748964	1750469	D	TA11070	join(<1748964..1749095,1749132..1749279,1749325..1749429,1749511..1749752,1749864..>1750469)	Theileria annulata	3862870
TA11065	mRNA	TA11065	NC_011098.1	1750631	1752440	D	TA11065	join(<1750631..1751012,1751041..1751539,1751579..1751946,1752047..1752228,1752261..>1752440)	Theileria annulata	3862869
TA11060	mRNA	TA11060	NC_011098.1	1752775	1753479	D	TA11060	join(<1752775..1753025,1753062..1753125,1753215..1753362,1753373..>1753479)	Theileria annulata	3862868
TA11055	mRNA	TA11055	NC_011098.1	1753633	1754211	D	TA11055	join(<1753633..1753683,1753715..1753768,1753838..1753993,1754023..1754114,1754145..>1754211)	Theileria annulata	3862867
TA11050	mRNA	TA11050	NC_011098.1	1754257	1756010	R	TA11050	complement(join(<1754257..1755785,1755902..>1756010))	Theileria annulata	3862866
TA11025	mRNA	TA11025	NC_011098.1	1756488	1758857	R	TA11025	complement(<1756488..>1758857)	Theileria annulata	3862861
TA10970	mRNA	TA10970	NC_011098.1	1759224	1761753	R	TA10970	complement(join(<1759224..1759544,1759579..1759787,1759818..1760371,1760402..1761257,1761287..1761520,1761561..>1761753))	Theileria annulata	3862850
TA10965	mRNA	TA10965	NC_011098.1	1762247	1763525	D	TA10965	join(<1762247..1762791,1762862..>1763525)	Theileria annulata	3862849
TA10860	mRNA	TA10860	NC_011098.1	1763581	1764615	R	TA10860	complement(<1763581..>1764615)	Theileria annulata	3862828
TA10855	mRNA	TA10855	NC_011098.1	1764981	1768415	D	TA10855	<1764981..>1768415	Theileria annulata	3862827
TA10750	mRNA	TA10750	NC_011098.1	1769079	1769988	R	TA10750	complement(join(<1769079..1769581,1769639..1769831,1769863..>1769988))	Theileria annulata	3862806
TA10745	mRNA	TA10745	NC_011098.1	1770456	1772711	D	TA10745	<1770456..>1772711	Theileria annulata	3862805
TA10690	mRNA	TA10690	NC_011098.1	1772977	1773600	D	TA10690	join(<1772977..1773037,1773061..1773399,1773488..>1773600)	Theileria annulata	3862644
TA10585	mRNA	TA10585	NC_011098.1	1773731	1777150	R	TA10585	complement(<1773731..>1777150)	Theileria annulata	3862711
TA10530	mRNA	TA10530	NC_011098.1	1777877	1780777	R	TA10530	complement(<1777877..>1780777)	Theileria annulata	3862690
TA10475	mRNA	TA10475	NC_011098.1	1781291	1783960	R	TA10475	complement(<1781291..>1783960)	Theileria annulata	3862679
TA10420	mRNA	TA10420	NC_011098.1	1784387	1786732	R	TA10420	complement(<1784387..>1786732)	Theileria annulata	3862561
TA10365	mRNA	TA10365	NC_011098.1	1787209	1789004	R	TA10365	complement(join(<1787209..1787388,1787427..1788041,1788125..1788422,1788487..>1789004))	Theileria annulata	3862550
TA10310	mRNA	TA10310	NC_011098.1	1789359	1790598	R	TA10310	complement(join(<1789359..1789589,1789684..1789881,1789914..1789974,1790042..1790070,1790203..1790235,1790458..>1790598))	Theileria annulata	3862627
TA10305	mRNA	TA10305	NC_011098.1	1790954	1791411	D	TA10305	join(<1790954..1791032,1791101..>1791411)	Theileria annulata	3862626
TA10200	mRNA	TA10200	NC_011098.1	1791489	1792271	R	TA10200	complement(<1791489..>1792271)	Theileria annulata	3862536
TA10195	mRNA	TA10195	NC_011098.1	1792500	1793346	D	TA10195	join(<1792500..1792642,1792675..1792782,1792816..1792897,1792998..1793141,1793172..1793246,1793281..>1793346)	Theileria annulata	3862535
TA10090	mRNA	TA10090	NC_011098.1	1793440	1794505	R	TA10090	complement(join(<1793440..1794014,1794075..1794284,1794319..>1794505))	Theileria annulata	3863337
TA10085	mRNA	TA10085	NC_011098.1	1795022	1796191	D	TA10085	join(<1795022..1795645,1795676..1795806,1795891..>1796191)	Theileria annulata	3863336
TA10030	mRNA	TA10030	NC_011098.1	1796755	1801884	D	TA10030	<1796755..>1801884	Theileria annulata	3863325
TA09975	mRNA	TA09975	NC_011098.1	1802691	1804019	D	TA09975	<1802691..>1804019	Theileria annulata	3863314
TA09920	mRNA	TA09920	NC_011098.1	1804732	1806714	D	TA09920	<1804732..>1806714	Theileria annulata	3863108
TA09865	mRNA	TA09865	NC_011098.1	1807516	1809609	D	TA09865	<1807516..>1809609	Theileria annulata	3863097
TA09810	mRNA	TA09810	NC_011098.1	1810696	1812141	D	TA09810	<1810696..>1812141	Theileria annulata	3863300
TA09805	mRNA	TA09805	NC_011098.1	1812413	1814080	D	TA09805	<1812413..>1814080	Theileria annulata	3863299
TA09800	mRNA	TA09800	NC_011098.1	1814334	1816532	D	TA09800	<1814334..>1816532	Theileria annulata	3863298
TA09795	mRNA	TA09795	NC_011098.1	1816817	1818997	D	TA09795	<1816817..>1818997	Theileria annulata	3863297
TA09790	mRNA	TA09790	NC_011098.1	1819165	1821225	D	TA09790	<1819165..>1821225	Theileria annulata	3863296
TA09785	mRNA	TA09785	NC_011098.1	1821852	1823660	D	TA09785	<1821852..>1823660	Theileria annulata	3863295
TA09780	mRNA	TA09780	NC_011098.1	1824870	1830224	D	TA09780	<1824870..>1830224	Theileria annulata	3863294
TA09775	mRNA	TA09775	NC_011098.1	1831115	1833475	D	TA09775	<1831115..>1833475	Theileria annulata	3863293
TA09770	mRNA	TA09770	NC_011098.1	1834424	1839549	D	TA09770	join(<1834424..1839194,1839236..>1839549)	Theileria annulata	3863292
Tap370b08.q2ca38.01	mRNA	Tap370b08.q2ca38.01	NT_167255.1	1	1519	D	Tap370b08.q2ca38.01	<1..>1519	Theileria annulata	3864552
Tap370b08.q2ca38.02c	mRNA	Tap370b08.q2ca38.02c	NT_167255.1	2326	3124	R	Tap370b08.q2ca38.02c	complement(join(<2326..3090,3122..>3124))	Theileria annulata	3864553
Tap370b08.q2ca38.03c	mRNA	Tap370b08.q2ca38.03c	NT_167255.1	4452	5543	R	Tap370b08.q2ca38.03c	complement(<4452..>5543)	Theileria annulata	3864554
5874000001	tRNA	5874000001	NC_011129.2	18353	18424	R	<NA>	complement(18353..18424)	Theileria annulata	
5874000002	tRNA	5874000002	NC_011129.2	18688	18759	R	<NA>	complement(18688..18759)	Theileria annulata	
5874000003	tRNA	5874000003	NC_011129.2	19541	19612	R	<NA>	complement(19541..19612)	Theileria annulata	
5874000004	tRNA	5874000004	NC_011129.2	60637	60709	R	<NA>	complement(60637..60709)	Theileria annulata	
5874000005	tRNA	5874000005	NC_011129.2	362133	362213	R	<NA>	complement(362133..362213)	Theileria annulata	
5874000006	tRNA	5874000006	NC_011129.2	966554	966624	R	<NA>	complement(966554..966624)	Theileria annulata	
5874000007	tRNA	5874000007	NC_011129.2	1145869	1145940	R	<NA>	complement(1145869..1145940)	Theileria annulata	
5874000008	tRNA	5874000008	NC_011129.2	1391418	1391501	D	<NA>	1391418..1391501	Theileria annulata	
5874000009	tRNA	5874000009	NC_011129.2	1734487	1734558	D	<NA>	1734487..1734558	Theileria annulata	
5874000010	tRNA	5874000010	NC_011129.2	1758631	1758703	D	<NA>	1758631..1758703	Theileria annulata	
5874000011	tRNA	5874000011	NC_011129.2	2331240	2331311	R	<NA>	complement(2331240..2331311)	Theileria annulata	
5874000012	tRNA	5874000012	NC_011129.2	2331856	2331927	R	<NA>	complement(2331856..2331927)	Theileria annulata	
5874000013	tRNA	5874000013	NC_011129.2	2407225	2407296	R	<NA>	complement(2407225..2407296)	Theileria annulata	
5874000014	tRNA	5874000014	NC_011129.2	2407590	2407662	R	<NA>	complement(2407590..2407662)	Theileria annulata	
5874000015	tRNA	5874000015	NC_011129.2	2487082	2487164	R	<NA>	complement(2487082..2487164)	Theileria annulata	
5874000016	tRNA	5874000016	NC_011099.1	297169	297240	D	<NA>	297169..297240	Theileria annulata	
5874000017	tRNA	5874000017	NC_011099.1	899311	899384	D	<NA>	899311..899384	Theileria annulata	
5874000018	tRNA	5874000018	NC_011099.1	1235102	1235174	D	<NA>	1235102..1235174	Theileria annulata	
5874000019	tRNA	5874000019	NC_011099.1	1303057	1303128	D	<NA>	1303057..1303128	Theileria annulata	
5874000020	tRNA	5874000020	NC_011099.1	1470244	1470316	D	<NA>	1470244..1470316	Theileria annulata	
5874000021	tRNA	5874000021	NC_011099.1	1737235	1737307	D	<NA>	1737235..1737307	Theileria annulata	
5874000022	tRNA	5874000022	NC_011099.1	1745526	1745598	D	<NA>	1745526..1745598	Theileria annulata	
5874000023	tRNA	5874000023	NC_011099.1	1789060	1789131	D	<NA>	1789060..1789131	Theileria annulata	
5874000024	tRNA	5874000024	NC_011099.1	1790205	1790276	D	<NA>	1790205..1790276	Theileria annulata	
5874000025	tRNA	5874000025	NC_011100.1	238699	238772	D	<NA>	238699..238772	Theileria annulata	
5874000026	tRNA	5874000026	NC_011100.1	263661	263732	D	<NA>	263661..263732	Theileria annulata	
5874000027	tRNA	5874000027	NC_011100.1	267284	267355	D	<NA>	267284..267355	Theileria annulata	
5874000028	tRNA	5874000028	NC_011100.1	544823	544904	D	<NA>	544823..544904	Theileria annulata	
5874000029	tRNA	5874000029	NC_011100.1	545145	545226	D	<NA>	545145..545226	Theileria annulata	
5874000030	tRNA	5874000030	NC_011100.1	1289521	1289603	D	<NA>	1289521..1289603	Theileria annulata	
5874000031	tRNA	5874000031	NC_011100.1	1388938	1389010	D	tRNA-Lys	1388938..1389010	Theileria annulata	
5874000032	tRNA	5874000032	NC_011100.1	1784668	1784740	D	tRNA-Val	1784668..1784740	Theileria annulata	
5874000033	tRNA	5874000033	NC_011100.1	1784970	1785042	D	tRNA-Val	1784970..1785042	Theileria annulata	
5874000034	tRNA	5874000034	NC_011100.1	1837131	1837204	D	<NA>	1837131..1837204	Theileria annulata	
5874000035	tRNA	5874000035	NC_011098.1	102824	102896	R	tRNA-Arg	complement(102824..102896)	Theileria annulata	
5874000036	tRNA	5874000036	NC_011098.1	103157	103229	R	<NA>	complement(103157..103229)	Theileria annulata	
5874000037	tRNA	5874000037	NC_011098.1	188179	188260	D	<NA>	188179..188260	Theileria annulata	
5874000038	tRNA	5874000038	NC_011098.1	762311	762381	D	<NA>	762311..762381	Theileria annulata	
5874000039	tRNA	5874000039	NC_011098.1	791156	791229	D	<NA>	791156..791229	Theileria annulata	
5874000040	tRNA	5874000040	NC_011098.1	896915	896996	D	<NA>	896915..896996	Theileria annulata	
5874000041	tRNA	5874000041	NC_011098.1	907483	907555	D	<NA>	907483..907555	Theileria annulata	
5874000042	tRNA	5874000042	NC_011098.1	984869	984940	D	<NA>	984869..984940	Theileria annulata	
5874000043	tRNA	5874000043	NC_011098.1	1335191	1335264	D	<NA>	1335191..1335264	Theileria annulata	
5874000044	tRNA	5874000044	NC_011098.1	1507859	1507938	D	<NA>	1507859..1507938	Theileria annulata	
5874000045	tRNA	5874000045	NC_011098.1	1508321	1508400	D	<NA>	1508321..1508400	Theileria annulata	
5874000046	tRNA	5874000046	NC_011098.1	1526641	1526712	D	<NA>	1526641..1526712	Theileria annulata	
5874000047	tRNA	5874000047	NC_011098.1	1646617	1646689	D	<NA>	1646617..1646689	Theileria annulata