-- dump date 20240514_000702 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GeneID -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type TA17495 3864312 complement(<1..704) 1 1 NC_011129.2 SfiI-subtelomeric fragment related protein family member, putative 704 3864312 TA17495 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953551.1 1 R 5874 CDS TA17500 3864313 complement(join(2448..2675,2687..2977,3054..4289)) 1 1 NC_011129.2 TapBAC05a05.q1k.C.cand.2 - score = 17.54; SfiI-subtelomeric fragment related protein family member, putative 4289 3864313 TA17500 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953552.1 2448 R 5874 CDS TA17505 3864314 complement(4455..12653) 1 1 NC_011129.2 TapBAC05a05.q1k.C.cand.1 - score = 157.72; Signal peptide predicted for TA17505 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.887 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 12653 3864314 TA17505 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953553.1 4455 R 5874 CDS TA09760 3864343 complement(14409..15083) 1 1 NC_011129.2 Tap465h02.q1ca.cand.26 - score = 13.62; SMART pfam:PS_Dcarbxylase (PF02666) at aa 38-209, E()=6.20e-28; 1 probable transmembrane helix predicted for TA09760 by TMHMM2.0 at aa 23-45; Signal anchor predicted for TA09760 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues 28 and 29; phosphatidylserine decarboxylase, putative 15083 3864343 TA09760 Theileria annulata phosphatidylserine decarboxylase, putative XP_953554.1 14409 R 5874 CDS TA09756 3864342 15519..16016 1 1 NC_011129.2 Signal peptide predicted for TA09756 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.845 between residues 18 and 19; GPI-Anchor Signal predicted for TA09756 by DGPI v2.04 with cleavage site probability 1.72 near 145; uncharacterized protein 16016 3864342 TA09756 Theileria annulata uncharacterized protein XP_953555.1 15519 D 5874 CDS TA09755 3864341 16715..17212 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.2 - score = 9.39; Signal peptide predicted for TA09755 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.665 between residues 20 and 21; uncharacterized protein 17212 3864341 TA09755 Theileria annulata uncharacterized protein XP_953556.1 16715 D 5874 CDS TA09750 3864340 complement(join(17321..17431,17537..17633,17663..17856,17887..18024,18055..18159,18191..18259)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.25 - score = 24.00; SMART CYCLIN (SM0385) at aa 20-112, E()=7.05e-06; 134-225, E()=6.36e-01; cyclin, putative 18259 3864340 TA09750 Theileria annulata cyclin, putative XP_953557.1 17321 R 5874 CDS TA09745 3864339 complement(join(19682..19947,19977..20469,20502..20645)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.24 - score = 23.66; SMART RING (SM0184) at aa 218-263, E()=2.74e-02; uncharacterized protein 20645 3864339 TA09745 Theileria annulata uncharacterized protein XP_953558.1 19682 R 5874 CDS TA09740 3864338 complement(join(20925..21193,21286..21386,21423..21517,21837..22115,22219..22276,22334..22420,22453..22492,22542..22677,22707..22949,23038..23097,23193..24083)) 1 1 NC_011129.2 SMART 2 transmembrane domains at aa 431-453 and 461-488; 2 probable transmembrane helices predicted for TA09740 by TMHMM2.0 at aa 431-453 and 466-488; uncharacterized protein 24083 3864338 TA09740 Theileria annulata uncharacterized protein XP_953559.1 20925 R 5874 CDS TA09735 3864337 24180..25901 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.4 - score = 15.47; SMART pfam:tRNA-synt_1 (PF00133) at aa 57-468, E()=2.10e-05; methionyl-tRNA synthetase, putative 25901 3864337 TA09735 Theileria annulata methionyl-tRNA synthetase, putative XP_953560.1 24180 D 5874 CDS TA09730 3864336 complement(join(26499..26729,26814..26911,26943..27030,27118..27222,27257..27412)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.22 - score = 16.94; uncharacterized protein 27412 3864336 TA09730 Theileria annulata uncharacterized protein XP_953561.1 26499 R 5874 CDS TA09725 3864335 complement(join(27626..27764,27795..27891,27921..28118,28535..28807,29216..29456)) 1 1 NC_011129.2 SMART 2 transmembrane domains at aa 95-117 and 179-201; 2 probable transmembrane helices predicted for TA09725 by TMHMM2.0 at aa 95-117 and 179-201; uncharacterized protein 29456 3864335 TA09725 Theileria annulata uncharacterized protein XP_953562.1 27626 R 5874 CDS TA09720 3864334 join(29587..29668,29698..29943,30478..30581,30964..31299) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.5 - score = 9.33; 1 probable transmembrane helix predicted for TA09720 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09720 by SignalP 2.0 HMM (Signal peptide probability 0.069, signal anchor probability 0.925) with cleavage site probability 0.033 between residues 28 and 29; uncharacterized protein 31299 3864334 TA09720 Theileria annulata uncharacterized protein XP_953563.1 29587 D 5874 CDS TA09715 3864333 join(31429..31722,31798..32064) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.6 - score = 7.21; uncharacterized protein 32064 3864333 TA09715 Theileria annulata uncharacterized protein XP_953564.1 31429 D 5874 CDS TA09710 3864332 32569..34767 1 1 NC_011129.2 SMART 2 RRM (SM0360) at aa 536-601, E()=4.49e-17 and 620-689, E()=1.91e-11; uncharacterized protein 34767 3864332 TA09710 Theileria annulata uncharacterized protein XP_953565.1 32569 D 5874 CDS TA09705 3864331 complement(join(35529..35636,35672..35804,36389..36902,37140..37217,37364..37628)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.20 - score = 9.08; uncharacterized protein 37628 3864331 TA09705 Theileria annulata uncharacterized protein XP_953566.1 35529 R 5874 CDS TA09700 3864330 complement(38037..38660) 1 1 NC_011129.2 Tap465h02.q1ca.cand.19 - score = 11.60; SMART RAB (SM0175) at aa 10-174, E()=1.66e-93; small GTPase (Rab11) 38660 3864330 TA09700 Theileria annulata small GTPase (Rab11) XP_953567.1 38037 R 5874 CDS TA09695 3864329 join(39215..39397,39428..39634) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.8 - score = 9.09; SMART pfam:Ribosomal_S8 (PF00410) at aa 23-122, E()=7.90e-05; 30S ribosomal protein S8, putative 39634 3864329 TA09695 Theileria annulata 30S ribosomal protein S8, putative XP_953568.1 39215 D 5874 CDS TA09690 3864328 join(39696..39813,39870..41536) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.9 - score = 28.09; SMART MIF4G (SM0543) at aa 101-284, E()-1.24e-24; MA3 (SM0544) at aa 406-511, E()=6.25e-21; cell-cycle-control protein (translation regulation), putative 41536 3864328 TA09690 Theileria annulata cell-cycle-control protein (translation regulation), putative XP_953569.1 39696 D 5874 CDS TA09685 3864092 complement(join(42287..42874,43150..43383,43502..43567)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.18 - score = 14.98; SMART 2 RRM (SM0360) at aa 10-78, E()=5.08e-16; 177-249, E()=4.52e-22; WW (SM0456) at aa 125-157, E()=1.32e-08; uncharacterized protein 43567 3864092 TA09685 Theileria annulata uncharacterized protein XP_953570.1 42287 R 5874 CDS TA09680 3864091 complement(join(44253..44513,44659..44788,44896..45391,45621..45833,46223..46847)) 1 1 NC_011129.2 SMART pfam:Exo_endo_phos (PF03372) at aa 5-364, E()=3.10e-23; sphingomyelinase, putative 46847 3864091 TA09680 Theileria annulata sphingomyelinase, putative XP_953571.1 44253 R 5874 CDS TA09675 3864090 48407..49027 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.10 - score = 15.35; Signal peptide predicted for TA09675 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.965 between residues 17 and 18; uncharacterized protein 49027 3864090 TA09675 Theileria annulata uncharacterized protein XP_953572.1 48407 D 5874 CDS TA09670 3864089 complement(49214..50032) 1 1 NC_011129.2 Tap465h02.q1ca.cand.17 - score = 9.65; Signal peptide predicted for TA09670 by SignalP 2.0 HMM (Signal peptide probability 0.682, signal anchor probability 0.000) with cleavage site probability 0.519 between residues 20 and 21; uncharacterized protein 50032 3864089 TA09670 Theileria annulata uncharacterized protein XP_953573.1 49214 R 5874 CDS TA09665 3864088 join(50223..50306,50340..50372,50487..50623,50716..50920,51811..52153,52323..52519) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.11 - score = 9.54; SMART pfam:ribonuc_red_sm (PF00268) at aa 18-299, E()=3.20e-11; 1 probable transmembrane helix predicted for TA09665 by TMHMM2.0 at aa 175-197; ribonucleoside reductase, putative 52519 3864088 TA09665 Theileria annulata ribonucleoside reductase, putative XP_953574.1 50223 D 5874 CDS TA09660 3864087 complement(join(52787..52972,53251..53421,53656..53782,53901..54043)) 1 1 NC_011129.2 SMART pfam:EMP24_GP25L (PF01105) at aa 4.00e-06; 2 probable transmembrane helices predicted for TA09660 by TMHMM2.0 at aa 10-29 and 176-198; Signal peptide predicted for TA09660 by SignalP 2.0 HMM (Signal peptide probability 0.728, signal anchor probability 0.242) with cleavage site probability 0.670 between residues 23 and 24; GPI-Anchor Signal predicted for TA09660 by DGPI v2.04 with cleavage site probability 0.11019999 near 173; vesicle transport protein, putative 54043 3864087 TA09660 Theileria annulata vesicle transport protein, putative XP_953575.1 52787 R 5874 CDS TA09655 3864086 join(54191..54394,54547..54915) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.12 - score = 14.79; uncharacterized protein 54915 3864086 TA09655 Theileria annulata uncharacterized protein XP_953576.1 54191 D 5874 CDS TA09650 3864085 join(56303..56420,56494..56567,56749..57121,57312..57370,57402..57476,57530..57709) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.13 - score = 11.97; uncharacterized protein 57709 3864085 TA09650 Theileria annulata uncharacterized protein XP_953577.1 56303 D 5874 CDS TA09645 3864084 complement(join(58326..58390,58466..58694,58798..58869,59245..59319,59370..59440,59552..59702,59735..59787,59909..60008,60197..60463)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.16 - score = 10.16; SMART pfam:BPL_LipA_LipB (PF03099) at aa 52-170, E()=4.30e-15; lipoate-protein ligase, putative 60463 3864084 TA09645 Theileria annulata lipoate-protein ligase, putative XP_953578.1 58326 R 5874 CDS TA09640 3864083 complement(join(60829..60938,61205..61408,61671..61813,61919..61970,62064..62161,62246..62334,62552..62670,62816..63109,63682..63732,63889..63955,64060..64173)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.15 - score = 7.21; uncharacterized protein 64173 3864083 TA09640 Theileria annulata uncharacterized protein XP_953579.1 60829 R 5874 CDS TA09635 3864082 join(64296..64421,64538..64758,64841..64978,65108..65903) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.14 - score = 19.83; uncharacterized protein 65903 3864082 TA09635 Theileria annulata uncharacterized protein XP_953580.1 64296 D 5874 CDS TA09630 3864081 complement(65960..66121) 1 1 NC_011129.2 cyclin-dependent kinase regulatory subunit, putative 66121 3864081 TA09630 Theileria annulata cyclin-dependent kinase regulatory subunit, putative XP_953581.1 65960 R 5874 CDS TA09625 3864080 complement(join(66971..67676,67707..68103,68520..69461,69834..69915,69949..70051,70157..70272,70365..70502)) 1 1 NC_011129.2 SMART pfam:GTP_EFTU (PF00009) at aa 123-280, E()=1.40e-06; uncharacterized protein 70502 3864080 TA09625 Theileria annulata uncharacterized protein XP_953582.1 66971 R 5874 CDS TA09620 3864079 complement(70615..74154) 1 1 NC_011129.2 Tap465h02.q1ca.cand.13 - score = 52.74; SMART PH (SM0233) at aa 749-938, E()=9.43e-01; uncharacterized protein 74154 3864079 TA09620 Theileria annulata uncharacterized protein XP_953583.1 70615 R 5874 CDS TA09615 3864078 complement(75362..79330) 1 1 NC_011129.2 Tap465h02.q1ca.cand.12 - score = 69.10; uncharacterized protein 79330 3864078 TA09615 Theileria annulata uncharacterized protein XP_953584.1 75362 R 5874 CDS TA09610 3864077 complement(join(80506..85005,85230..85340)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.11 - score = 72.47; SMART 3 TPR (SM0028) domains at aa 29-62, E()=8.77e+01; 171-204, E()=2.55e-02; 915-948, E()=3.27e+00; uncharacterized protein 85340 3864077 TA09610 Theileria annulata uncharacterized protein XP_953585.1 80506 R 5874 CDS TA09605 3864076 complement(join(85606..86059,86172..86453,86537..86597,86655..86692,86722..86805,86873..86954,86987..87044,87086..87210,87304..87352)) 1 1 NC_011129.2 SMART SFM (SM0500) at aa 79-121, E()=7.40e-03 and pfam:Prp18 (PF02840) at aa 261-408, E()=9.60e-47; pre-mRNA splicing protein (Prp18) 87352 3864076 TA09605 Theileria annulata pre-mRNA splicing protein (Prp18) XP_953586.1 85606 R 5874 CDS TA09600 3864075 join(87783..88206,88500..88910,89003..89241,89276..89613,89664..90711,90834..91313) 1 1 NC_011129.2 SMART 5 transmembrane domains at aa 139-161, 232-250, 371-388, 422-444 and 451-468; 6 probable transmembrane helices predicted for TA09600 by TMHMM2.0 at aa 139-161, 232-250, 371-388, 422-444, 451-468 and 899-921; Tpr-related protein family member, putative 91313 3864075 TA09600 Theileria annulata Tpr-related protein family member, putative XP_953587.1 87783 D 5874 CDS TA09590 3864074 complement(join(91424..92140,92434..92568,92619..92746,92917..93040)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.8 - score = 24.51; SMART pfam:ldh (PF00056) at aa 5-198, E()=2.20e-12; pfam:ldh_C (PF02866) at aa 200-366, E()=2.80e-42; high sequence similarity between lactate- and malate- dehydrogenases but distinguished by comparison to respective enzyme sequences from S. pombe; L-lactate dehydrogenase, putative 93040 3864074 TA09590 Theileria annulata L-lactate dehydrogenase, putative XP_953588.1 91424 R 5874 CDS TA09585 3864073 complement(join(93453..93880,93988..94201)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.7 - score = 14.20; uncharacterized protein 94201 3864073 TA09585 Theileria annulata uncharacterized protein XP_953589.1 93453 R 5874 CDS TA09580 3864522 join(94549..94571,94686..94822,95016..95195,96181..96701) 1 1 NC_011129.2 SMART 2 transmembrane domains aa 15-37 and 156-178; uncharacterized protein 96701 3864522 TA09580 Theileria annulata uncharacterized protein XP_953590.1 94549 D 5874 CDS TA09575 3864521 complement(97516..99618) 1 1 NC_011129.2 Tap465h02.q1ca.cand.6 - score = 50.66; uncharacterized protein 99618 3864521 TA09575 Theileria annulata uncharacterized protein XP_953591.1 97516 R 5874 CDS TA09570 3864520 complement(join(99620..99729,99763..99810,99841..100095,100566..100824)) 1 1 NC_011129.2 SMART 3 EGF (SM0181) domains at aa 23-60, E()=1.00e+01; 78-112, E()=1.47e+01; 117-156, E()=3.57e+01; 1 transmembrane domain at aa 191-213; 1 probable transmembrane helix predicted for TA09570 by TMHMM2.0 at aa 191-213; uncharacterized protein 100824 3864520 TA09570 Theileria annulata uncharacterized protein XP_953592.1 99620 R 5874 CDS TA09565 3864519 100997..101944 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.17 - score = 16.90; SMART pfam:Acetyltransf (PF00583) at aa 222-304, E()=3.50e-03; uncharacterized protein 101944 3864519 TA09565 Theileria annulata uncharacterized protein XP_953593.1 100997 D 5874 CDS TA09560 3864518 102295..112476 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.18 - score = 261.97; SMART 2 transmembrane domains at aa 1475-1497, 1510-1532; 2 probable transmembrane helices predicted for TA09560 by TMHMM2.0 at aa 1475-1497 and 1510-1532; uncharacterized protein 112476 3864518 TA09560 Theileria annulata uncharacterized protein XP_953594.1 102295 D 5874 CDS TA09555 3864517 join(112797..119729,119790..119969) 1 1 NC_011129.2 SMART ANK (SM0248) at aa 895-925, E()=2.39e+02; 930-960, E()=2.92e-02; 964-996, E()=1.21e+01; HECTc (SM0119) at aa 1924-2357, E()=3.76e-13; uncharacterized protein 119969 3864517 TA09555 Theileria annulata uncharacterized protein XP_953595.1 112797 D 5874 CDS TA09550 3864516 120108..120761 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.19 - score = 14.50; SfiI-subtelomeric fragment related protein family member, putative 120761 3864516 TA09550 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953596.1 120108 D 5874 CDS TA09545 3864515 complement(join(121010..121177,121251..121844)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.4 - score = 18.92; SMART POP4 (SM0538) at aa 159-250, E()=3.42e-13; ribonuclease P subunit, putative 121844 3864515 TA09545 Theileria annulata ribonuclease P subunit, putative XP_953597.1 121010 R 5874 CDS TA09540 3864514 complement(122118..122858) 1 1 NC_011129.2 Tap465h02.q1ca.cand.3 - score = 34.74; uncharacterized protein 122858 3864514 TA09540 Theileria annulata uncharacterized protein XP_953598.1 122118 R 5874 CDS TA09535 3864513 complement(join(122936..123610,123704..124042,124123..124182)) 1 1 NC_011129.2 Tap465h02.q1ca.cand.3 - score = 34.74; uncharacterized protein 124182 3864513 TA09535 Theileria annulata uncharacterized protein XP_953599.1 122936 R 5874 CDS TA09530 3864512 join(124667..124807,124903..125052,125210..125368,125447..125563,125683..125840,125901..125971,126074..126492) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.20 - score = 14.22; SMART 5 transmembrane domains at aa 51-73, 267-286, 291-313, 325-347 and 362-384; pfam:CDP-OH_P_transf (PF01066) at aa 90-257, E()=1.50e-04; 7 probable transmembrane helices predicted for TA09530 by TMHMM2.0 at aa 51-73, 178-200, 232-254, 267-286, 291-313, 325-347 and 362-384; ethanolamine phosphotransferase, putative 126492 3864512 TA09530 Theileria annulata ethanolamine phosphotransferase, putative XP_953600.1 124667 D 5874 CDS TA09525 3864511 complement(126549..127562) 1 1 NC_011129.2 Tap465h02.q1ca.cand.2 - score = 21.57; uncharacterized protein 127562 3864511 TA09525 Theileria annulata uncharacterized protein XP_953601.1 126549 R 5874 CDS TA09520 3864510 complement(128076..128330) 1 1 NC_011129.2 Tap465h02.q1ca.cand.1 - score = 7.05; SMART 1 transmembrane domain at aa 33-55; 1 probable transmembrane helix predicted for TA09520 by TMHMM2.0 at aa 33-55; Signal anchor predicted for TA09520 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.928) with cleavage site probability 0.000 between residues 47 and 48; uncharacterized protein 128330 3864510 TA09520 Theileria annulata uncharacterized protein XP_953602.1 128076 R 5874 CDS TA09515 3864509 join(128647..128764,128893..129230) 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.21 - score = 45.52; SMART ZnF_U1 (SM0451) at aa 1-37, E()=8.47e-07; RNA-binding protein (U1 snRNP-like), putative 129230 3864509 TA09515 Theileria annulata RNA-binding protein (U1 snRNP-like), putative XP_953603.1 128647 D 5874 CDS TA09510 3864508 129465..131036 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.21 - score = 45.52; SfiI-subtelomeric fragment related protein family member, putative 131036 3864508 TA09510 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953604.1 129465 D 5874 CDS TA09505 3864507 131537..133108 1 1 NC_011129.2 Tap465h02.q1ca.C.cand.21 - score = 45.52; SfiI-subtelomeric fragment related protein family member, putative 133108 3864507 TA09505 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953605.1 131537 D 5874 CDS TA16700 3863677 133664..134866 1 1 NC_011129.2 Tap821d03.p1c.C.cand.2 - score = 25.82; SMART pfam:DUF529 (PF04385) at aa 28-155, E()=4.50e-07; SfiI-subtelomeric fragment related protein family member, putative 134866 3863677 TA16700 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953606.1 133664 D 5874 CDS TA16695 3863676 complement(join(135117..135449,135482..135734,135853..136134,136228..139601)) 1 1 NC_011129.2 Tap821d03.p1c.cand.110 - score = 89.30; SMART 3 transmembrane domains at aa 183-205, 552-569 and 701-723; STYKc (SM00221) at aa 964-1404, E()=1.34e-04; 3 probable transmembrane helices predicted for TA16695 by TMHMM2.0 at aa 183-205, 552-569 and 701-723; serine/threonine protein kinase, putative 139601 3863676 TA16695 Theileria annulata serine/threonine protein kinase, putative XP_953607.1 135117 R 5874 CDS TA16690 3863675 join(140584..141108,141209..141667) 1 1 NC_011129.2 SMART KH (SM0322) at aa 165-254, E()=5.44e-09; 2 ZnF_C2H2 (SM0343) at aa 286-302, E()=9.87e-02; 314-330, E()=5.04e-02; uncharacterized protein 141667 3863675 TA16690 Theileria annulata uncharacterized protein XP_953608.1 140584 D 5874 CDS TA16680 3864033 complement(join(141874..142161,142249..142336,142387..142568,142598..142965,143041..143494,143546..143710,143779..143856,143928..144059,144187..144471,144530..144961)) 1 1 NC_011129.2 SMART pfam:DEAD (PF00270) at aa 136-341, E()=2.30e-02; HELICc (SM00490) at aa 355-446, E()=4.81e-15; Signal peptide predicted for TA16680 by SignalP 2.0 HMM (Signal peptide probability 0.916, signal anchor probability 0.000) with cleavage site probability 0.848 between residues 15 and 16; GPI-Anchor Signal predicted for TA16680 by DGPI v2.04, no cleavage site predicted; ATP-dependent RNA helicase, putative 144961 3864033 TA16680 Theileria annulata ATP-dependent RNA helicase, putative XP_953609.1 141874 R 5874 CDS TA16675 3864032 145373..146374 1 1 NC_011129.2 Tap821d03.p1c.C.cand.4 - score = 21.73; uncharacterized protein 146374 3864032 TA16675 Theileria annulata uncharacterized protein XP_953610.1 145373 D 5874 CDS TA16670 3864031 join(147293..147631,147825..148229,148261..148456,148578..148780,148834..149059,149230..149315) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.5 - score = 39.79; SMART 12 transmembrane domains at aa 21-43, 63-82, 89-108, 113-132, 144-166, 179-201, 243-265, 275-297, 310-332, 337-359, 379-398 and 434-456; 12 probable transmembrane helices predicted for TA16670 by TMHMM2.0 at aa 21-43, 63-82, 89-108, 113-132, 144-166, 179-201, 243-265, 275-297, 310-332, 337-359, 379-398 and 434-456; uncharacterized protein 149315 3864031 TA16670 Theileria annulata uncharacterized protein XP_953611.1 147293 D 5874 CDS TA16665 3864030 join(149660..149692,149724..149895,149984..150123,150229..150344,150385..150437,150469..150720,150870..151048) 1 1 NC_011129.2 SMART pfam:GATase (PF00117) at aa 20-266, E()=9.80e-03; uncharacterized protein 151048 3864030 TA16665 Theileria annulata uncharacterized protein XP_953612.1 149660 D 5874 CDS TA16660 3864029 complement(join(151238..154260,154324..156339,156439..156544)) 1 1 NC_011129.2 Tap821d03.p1c.cand.107 - score = 92.14; SMART transmembrane domain at 41-63; 1 probable transmembrane helix predicted for TA16660 by TMHMM2.0 at aa 41-63; uncharacterized protein 156544 3864029 TA16660 Theileria annulata uncharacterized protein XP_953613.1 151238 R 5874 CDS TA16655 3864028 join(157317..158094,158166..159016) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.6 - score = 19.79; uncharacterized protein 159016 3864028 TA16655 Theileria annulata uncharacterized protein XP_953614.1 157317 D 5874 CDS TA16650 3864027 join(159178..159321,159403..159422,159454..159587,159650..160965) 1 1 NC_011129.2 uncharacterized protein 160965 3864027 TA16650 Theileria annulata uncharacterized protein XP_953615.1 159178 D 5874 CDS TA16645 3864026 complement(join(161087..161362,161378..161595,161657..161729,161859..162075,162092..162203,162264..162316,162349..162605,162700..162858,162995..163113,163186..163431,163519..163948)) 1 1 NC_011129.2 SMART 2 AAA domains at aa 121-256, E()=5.62e-20; 418-568, E()=5.09e-09; ATPase, putative 163948 3864026 TA16645 Theileria annulata ATPase, putative XP_953616.1 161087 R 5874 CDS TA16640 3864025 complement(join(164735..165019,165135..165325,165460..165589,165639..165866,165957..166061,166136..166237,166272..166446,166576..166835)) 1 1 NC_011129.2 Tap821d03.p1c.cand.105 - score = 24.41; SMART pfam:DDHD (PF02862) at aa 190-435, E()=5.20e-09; uncharacterized protein 166835 3864025 TA16640 Theileria annulata uncharacterized protein XP_953617.1 164735 R 5874 CDS TA16635 3864024 join(167270..167390,167492..167533,167594..167903,168020..168176) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.8 - score = 12.68; SMART pfam:sodfe (PF00081) at aa 1-93, E()=1.80e-39; pfam:sodfe_C (PF02777) at aa 97-206, E()=1.60e-36; Fe/Mn superoxide dismutase (SOD), putative 168176 3864024 TA16635 Theileria annulata Fe/Mn superoxide dismutase (SOD), putative XP_953618.1 167270 D 5874 CDS TA16625 3864022 join(168413..168867,168898..168971,169026..169201,169215..169288,169320..169421,169566..169761,169824..169895,169947..170086,170108..170192,170225..170437,170507..170623) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.9 - score = 8.72; uncharacterized protein 170623 3864022 TA16625 Theileria annulata uncharacterized protein XP_953619.1 168413 D 5874 CDS TA16620 3864021 complement(join(171591..172002,172158..172432,172588..172959,172990..173067)) 1 1 NC_011129.2 Tap821d03.p1c.cand.104 - score = 25.13; SMART 2 transmembrane domains at aa 79-96 and 244-266; DnaJ (SM00271) at aa 127-184, E()=2.45e-22; 2 probable transmembrane helices predicted for TA16620 by TMHMM2.0 at aa 79-96 and 244-266; DnaJ-like molecular chaperone, putative 173067 3864021 TA16620 Theileria annulata DnaJ-like molecular chaperone, putative XP_953620.1 171591 R 5874 CDS TA16615 3864020 complement(join(173442..173760,173812..173896,173946..173989,174027..174095,174150..174253,174350..174508,174558..174697,174792..175686,175793..176020,176061..176203,176365..176419)) 1 1 NC_011129.2 SMART 4 transmembrane domains at aa 416-438, 473-495, 560-582 and 592-614; 5 probable transmembrane helices predicted for TA16615 by TMHMM2.0 at aa 20-39, 416-438, 473-495, 560-582 and 592-614; uncharacterized protein 176419 3864020 TA16615 Theileria annulata uncharacterized protein XP_953621.1 173442 R 5874 CDS TA16610 3864019 join(176554..176705,176764..176867,176957..177069,177184..177274,177307..177416,177524..177854,177968..178503) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.11 - score = 15.88; SMART pfam:Peptidase_M18 (PF02127) at aa 21-475, E()=6.60e-115; pfam:Peptidase_M42 (PF05343) at aa 170-470, E()=6.30e-02; aspartyl aminopeptidase, putative 178503 3864019 TA16610 Theileria annulata aspartyl aminopeptidase, putative XP_953622.1 176554 D 5874 CDS TA16605 3864018 complement(178672..179787) 1 1 NC_011129.2 Tap821d03.p1c.cand.101 - score = 30.82; SMART 1 transmembrane domain at aa 324-346; 1 probable transmembrane helix predicted for TA16605 by TMHMM2.0 at aa 324-346; Tpr-related protein family member, putative 179787 3864018 TA16605 Theileria annulata Tpr-related protein family member, putative XP_953623.1 178672 R 5874 CDS TA16600 3864017 180077..180982 1 1 NC_011129.2 Tap821d03.p1c.C.cand.12 - score = 19.17; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA16600 by TMHMM2.0 at aa 5-27; Tpr-related protein family member, putative 180982 3864017 TA16600 Theileria annulata Tpr-related protein family member, putative XP_953624.1 180077 D 5874 CDS TA16595 3864016 complement(join(180933..181259,181284..182420,182507..185296)) 1 1 NC_011129.2 Tap821d03.p1c.cand.100 - score = 179.37; SMART 4 pfam:DUF529 (PF04385) at aa 171-317, E()=2.20e-38; 363-501, E()=2.30e-76; 566-704, E()=2.40e-75; 789-929, E()=2.40e-51; SfiI-subtelomeric fragment related protein family member, putative 185296 3864016 TA16595 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953625.1 180933 R 5874 CDS TA16590 3864268 complement(join(185409..186861,187030..187116,187212..187539,187692..187769,187842..188045,188207..189637,189816..190809)) 1 1 NC_011129.2 SMART pfam:Syja_N (PF02383) at aa 75-426, E()=3.00e-15; IPPc (SM00128) at aa 1.59e-22; inositol phosphatase, putative 190809 3864268 TA16590 Theileria annulata inositol phosphatase, putative XP_953626.1 185409 R 5874 CDS TA16585 3864267 join(191515..192283,192379..192841,192934..193181,193269..193428,193588..193659,193760..193901) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.14 - score = 21.44; SMART DEXDc (SM00487) at aa 87-346, E()=1.55e-03; pfam:helicase_C (PF00271) at aa 415-485, E()=1.80e-02; DEAD-box family helicase, putative 193901 3864267 TA16585 Theileria annulata DEAD-box family helicase, putative XP_953627.1 191515 D 5874 CDS TA16580 3864266 complement(196343..197059) 1 1 NC_011129.2 Tap821d03.p1c.cand.99 - score = 21.06; Signal peptide predicted for TA16580 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.579 between residues 17 and 18; uncharacterized protein 197059 3864266 TA16580 Theileria annulata uncharacterized protein XP_953628.1 196343 R 5874 CDS TA16565 3864263 complement(197514..198215) 1 1 NC_011129.2 Tap821d03.p1c.cand.98 - score = 18.91; Signal peptide predicted for TA16565 by SignalP 2.0 HMM (Signal peptide probability 0.884, signal anchor probability 0.000) with cleavage site probability 0.376 between residues 17 and 18; GPI-Anchor Signal predicted for TA16565 by DGPI v2.04 with cleavage site probability 0.152 near 202; uncharacterized protein 198215 3864263 TA16565 Theileria annulata uncharacterized protein XP_953629.1 197514 R 5874 CDS TA16560 3864262 complement(join(198592..198957,199073..199882)) 1 1 NC_011129.2 Tap821d03.p1c.cand.97 - score = 17.77; SMART IPPc (SM0128) at aa 22-376, E()=2.99e-07; inositol phosphatase, putative 199882 3864262 TA16560 Theileria annulata inositol phosphatase, putative XP_953630.1 198592 R 5874 CDS TA16555 3864261 join(200602..201353,201389..201508,201588..201704,201812..201931,201962..202172) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.15 - score = 24.65; SMART 1 transmembrane domain at aa 368-390; 1 probable transmembrane helix predicted for TA16555 by TMHMM2.0 at aa 368-390; uncharacterized protein 202172 3864261 TA16555 Theileria annulata uncharacterized protein XP_953631.1 200602 D 5874 CDS TA16550 3864260 202420..203847 1 1 NC_011129.2 Tap821d03.p1c.C.cand.16 - score = 17.31; SMART 10 transmembrane domains at aa 12-31, 51-73, 93-115, 125-147, 189-211, 231-253, 266-284, 314-336, 356-378 and 388-410; 10 probable transmembrane helices predicted for TA16550 by TMHMM2.0 at aa 12-31, 51-73, 93-115, 125-147, 189-211, 231-253, 266-284, 314-336, 356-378 and 388-410; Tpr-related protein family member, putative 203847 3864260 TA16550 Theileria annulata Tpr-related protein family member, putative XP_953632.1 202420 D 5874 CDS TA16545 3864259 complement(203864..204154) 1 1 NC_011129.2 Tap821d03.p1c.cand.96 - score = 10.41; SMART pfam:Acylphosphatase (PF00708) at aa 3-91, E()=1.20e-16; acylphosphatase, putative 204154 3864259 TA16545 Theileria annulata acylphosphatase, putative XP_953633.1 203864 R 5874 CDS TA16540 3864258 205426..205932 1 1 NC_011129.2 Tap821d03.p1c.C.cand.17 - score = 12.59; SMART PTPc_DSPc (SM00012) at aa 10-155, E()=1.09e-01; protein tyrosine phosphatase, putative 205932 3864258 TA16540 Theileria annulata protein tyrosine phosphatase, putative XP_953634.1 205426 D 5874 CDS TA16535 3864257 join(207047..207458,207582..208325,208530..209146) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.18 - score = 44.72; uncharacterized protein 209146 3864257 TA16535 Theileria annulata uncharacterized protein XP_953635.1 207047 D 5874 CDS TA16530 3864256 join(210788..210932,210962..211123,211153..211218,211271..211431,211526..211691,211722..211981) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.19 - score = 31.28; SMART UBQ (SM00213) at aa 3-74, E()=5.71e-23; 2 STI1 (SM00727) domains at aa 137-167, E()=2.37e+00; 171- 206, E()=3.71e+00; UBA (SM00165) at aa 278-316, E()=1.34e- 06; ubiquitin-related chaperonin, putative 211981 3864256 TA16530 Theileria annulata ubiquitin-related chaperonin, putative XP_953636.1 210788 D 5874 CDS TA16525 3864255 complement(212155..213273) 1 1 NC_011129.2 Tap821d03.p1c.cand.94 - score = 10.73; SMART 3 transmembrane domains at aa 19-36, 51-73 and 164-182; pfam:DUF250 (PF03151) at aa 204-372, E()=1.90e-02; pfam:DUF6 (PF00892) at aa 230-360, E()=2.20e- 06; 9 probable transmembrane helices predicted for TA16525 by TMHMM2.0 at aa 19-36, 51-73, 164-182, 187-206, 219-238, 253-275, 287-309, 314-336 and 343-361; Signal anchor predicted for TA16525 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.995) with cleavage site probability 0.003 between residues 33 and 34; uncharacterized protein 213273 3864255 TA16525 Theileria annulata uncharacterized protein XP_953637.1 212155 R 5874 CDS TA16520 3864254 join(213623..213829,213925..214300,214330..214432,214489..214768) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.21 - score = 23.26; SMART pfam:UFD1 (PF03152) at aa 156-318, E()=7.40e-07; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA16520 by SignalP 2.0 HMM (Signal peptide probability 0.772, signal anchor probability 0.032) with cleavage site probability 0.595 between residues 29 and 30; ubiquitin-fusion degradation pathway component, UFD1 214768 3864254 TA16520 Theileria annulata ubiquitin-fusion degradation pathway component, UFD1 XP_953638.1 213623 D 5874 CDS TA16515 3864253 215248..217821 1 1 NC_011129.2 Tap821d03.p1c.C.cand.22 - score = 45.64; uncharacterized protein 217821 3864253 TA16515 Theileria annulata uncharacterized protein XP_953639.1 215248 D 5874 CDS TA16510 3864252 join(217858..218151,218297..218621,218687..218836,218873..219021) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.23 - score = 17.54; SMART pfam:OMPdecase (PF00215) at aa 60-282, E()7.60e-10; orotidine 5'-phosphate decarboxylase, putative 219021 3864252 TA16510 Theileria annulata orotidine 5'-phosphate decarboxylase, putative XP_953640.1 217858 D 5874 CDS TA16505 3864251 complement(join(219025..219276,219306..219494,219524..219716,219778..219947,219991..221519,221572..224413)) 1 1 NC_011129.2 Tap821d03.p1c.cand.93 - score = 158.47; SMART DEXDc (SM00487) at aa 787-979, E()=2.88e-36; HELICc (SM00490) at aa 1436-1519, E()=1.10e-23; DEAD-box family helicase, putative 224413 3864251 TA16505 Theileria annulata DEAD-box family helicase, putative XP_953641.1 219025 R 5874 CDS TA16500 3864250 complement(join(224457..224852,224902..224972,225004..225078,225116..225331,225461..227303)) 1 1 NC_011129.2 Tap821d03.p1c.cand.92 - score = 56.58; phosphatidylglycerophosphate synthase, putative 227303 3864250 TA16500 Theileria annulata phosphatidylglycerophosphate synthase, putative XP_953642.1 224457 R 5874 CDS TA16495 3864249 join(228010..228543,228693..229535,229602..229685,229732..229851,229888..230013) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.24 - score = 9.92; uncharacterized protein 230013 3864249 TA16495 Theileria annulata uncharacterized protein XP_953643.1 228010 D 5874 CDS TA16490 3864072 join(230052..230095,230124..230572,230605..230750,230783..230902) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.25 - score = 52.25; SMART pfam:Ribosomal_L23 (PF00276) at aa 17-111, E()=1.80e-07; ribosomal protein L23 (or L25), putative 230902 3864072 TA16490 Theileria annulata ribosomal protein L23 (or L25), putative XP_953644.1 230052 D 5874 CDS TA16485 3864071 231843..233504 1 1 NC_011129.2 Tap821d03.p1c.C.cand.26 - score = 46.59; uncharacterized protein 233504 3864071 TA16485 Theileria annulata uncharacterized protein XP_953645.1 231843 D 5874 CDS TA16480 3864070 complement(join(233688..233764,233791..233836,233866..233924,233954..234065)) 1 1 NC_011129.2 Tap821d03.p1c.cand.91 - score = 12.07; uncharacterized protein 234065 3864070 TA16480 Theileria annulata uncharacterized protein XP_953646.1 233688 R 5874 CDS TA16475 3864069 join(234726..235880,235950..236053,236110..236257,236310..236388,236463..236563,236601..236760,236817..237010,237045..237872) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.27 - score = 76.72; SMART HATPase_c (SM00387) at aa 131-315, E()=5.52e-16; TOP2c (SM00433) at aa 135-913, E()=1.17e-142; DNA topoisomerase II, putative 237872 3864069 TA16475 Theileria annulata DNA topoisomerase II, putative XP_953647.1 234726 D 5874 CDS TA16470 3864068 complement(join(237934..238184,238231..238332,238362..238533,238564..238665,238694..238755,238785..239253)) 1 1 NC_011129.2 Tap821d03.p1c.cand.90 - score = 31.41; uncharacterized protein 239253 3864068 TA16470 Theileria annulata uncharacterized protein XP_953648.1 237934 R 5874 CDS TA16460 3864066 join(239830..240532,240576..240731,240764..241273,241328..242376) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.28 - score = 78.41; SMART 1 transmembrane domain at aa 159-181; AAA (SM00382) at aa 263-403, E()=5.27e-25; pam:Peptidase_M41 (PF01434) at aa 461-666, E()=3.80e-73; 1 probable transmembrane helix predicted for TA16460 by TMHMM2.0 at aa 159-181; metalloprotease/cell division cycle protein (FtsH) 242376 3864066 TA16460 Theileria annulata metalloprotease/cell division cycle protein (FtsH) XP_953649.1 239830 D 5874 CDS TA16455 3864065 complement(242436..245225) 1 1 NC_011129.2 Tap821d03.p1c.cand.88 - score = 56.83; SMART pfam:Vsp16_N (PF04841) at aa 1-480, E()=1.70e-02; pfam:Vsp16_C (PF04840) at aa 616-925, E()=7.20e-05; vacuolar sorting protein (Vps16) 245225 3864065 TA16455 Theileria annulata vacuolar sorting protein (Vps16) XP_953650.1 242436 R 5874 CDS TA16450 3864064 complement(join(245555..246402,246457..246586,246617..246718,246819..247088)) 1 1 NC_011129.2 Tap821d03.p1c.cand.87 - score = 33.65; SMART 7 WD40 (SM00320) domains, at aa 68-111, E()=1.10e+01; 116-155, E()=2.57e+00; 159-198, E()=2.30e+00; 205-243, E()=3.64e-02; 246-285, E()=2.93e- 06; 313-352, E()=7.64e+01; 360-399, E()=8.04e-04; uncharacterized protein 247088 3864064 TA16450 Theileria annulata uncharacterized protein XP_953651.1 245555 R 5874 CDS TA16445 3864063 complement(join(247130..247253,247297..247633,247668..248286)) 1 1 NC_011129.2 Tap821d03.p1c.cand.86 - score = 28.37; SMART pfam:Ribosomal_L1 (PF00687) at aa 128-346, E()=1.80e-10; chloroplast ribosomal protein L1 or 50S ribosomal protein L10, putative 248286 3864063 TA16445 Theileria annulata chloroplast ribosomal protein L1 or 50S ribosomal protein L10, putative XP_953652.1 247130 R 5874 CDS TA16440 3864062 250106..252058 1 1 NC_011129.2 Tap821d03.p1c.C.cand.29 - score = 55.09; uncharacterized protein 252058 3864062 TA16440 Theileria annulata uncharacterized protein XP_953653.1 250106 D 5874 CDS TA16435 3864061 join(252654..252725,252757..253728) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.30 - score = 26.33; uncharacterized protein 253728 3864061 TA16435 Theileria annulata uncharacterized protein XP_953654.1 252654 D 5874 CDS TA16430 3864060 join(254026..254286,254319..254383,254416..254542) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.31 - score = 15.93; uncharacterized protein 254542 3864060 TA16430 Theileria annulata uncharacterized protein XP_953655.1 254026 D 5874 CDS TA16425 3864059 complement(join(254738..254806,254836..254864,254952..255660)) 1 1 NC_011129.2 Tap821d03.p1c.cand.84 - score = 19.49; uncharacterized protein 255660 3864059 TA16425 Theileria annulata uncharacterized protein XP_953656.1 254738 R 5874 CDS TA16420 3864058 join(255936..256532,256587..256839,256940..257295) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.32 - score = 18.69; Signal peptide predicted for TA16420 by SignalP 2.0 HMM (Signal peptide probability 0.671, signal anchor probability 0.000) with cleavage site probability 0.640 between residues 17 and 18; uncharacterized protein 257295 3864058 TA16420 Theileria annulata uncharacterized protein XP_953657.1 255936 D 5874 CDS TA16415 3864057 complement(join(257355..257675,257709..257819,257870..258638,258670..259346)) 1 1 NC_011129.2 Tap821d03.p1c.cand.83 - score = 57.77; SMART pfam:DUF408 (PF04181) at aa 158-339, E()=6.20e-03; uncharacterized protein 259346 3864057 TA16415 Theileria annulata uncharacterized protein XP_953658.1 257355 R 5874 CDS TA16400 3864054 complement(join(259531..260762,260823..261246)) 1 1 NC_011129.2 Tap821d03.p1c.cand.82 - score = 47.24; SMART pfam:cpn60_TCP1 (PF00118) at aa 36-537, E()=3.20e-139; chaperonin (T-complex protein 1 (TCP1), theta subunit) 261246 3864054 TA16400 Theileria annulata chaperonin (T-complex protein 1 (TCP1), theta subunit) XP_953659.1 259531 R 5874 CDS TA16395 3863409 261754..262941 1 1 NC_011129.2 Tap821d03.p1c.C.cand.33 - score = 13.64; uncharacterized protein 262941 3863409 TA16395 Theileria annulata uncharacterized protein XP_953660.1 261754 D 5874 CDS TA16390 3863408 complement(join(263040..263112,263143..263934,264023..264069)) 1 1 NC_011129.2 Tap821d03.p1c.cand.81 - score = 22.41; uncharacterized protein 264069 3863408 TA16390 Theileria annulata uncharacterized protein XP_953661.1 263040 R 5874 CDS TA16385 3863407 264399..266837 1 1 NC_011129.2 Tap821d03.p1c.C.cand.34 - score = 61.36; uncharacterized protein 266837 3863407 TA16385 Theileria annulata uncharacterized protein XP_953662.1 264399 D 5874 CDS TA16380 3863406 complement(join(266913..267572,267605..267715,267757..267855)) 1 1 NC_011129.2 Tap821d03.p1c.cand.80 - score = 22.18; SMART RING (SM00184) at aa 237-275, E()=8.56e-06; uncharacterized protein 267855 3863406 TA16380 Theileria annulata uncharacterized protein XP_953663.1 266913 R 5874 CDS TA16375 3863405 complement(join(268258..270014,270138..270192,270283..270384)) 1 1 NC_011129.2 Tap821d03.p1c.cand.79 - score = 58.28; uncharacterized protein 270384 3863405 TA16375 Theileria annulata uncharacterized protein XP_953664.1 268258 R 5874 CDS TA16370 3863404 complement(270921..273932) 1 1 NC_011129.2 Tap821d03.p1c.cand.78 - score = 46.08; SMART 9 transmembrane domains at aa 95-117, 159-181, 248-270, 285-307, 442-464, 507-529, 575-597, 612-634 and 737-759; 9 probable transmembrane helices predicted for TA16370 by TMHMM2.0 at aa 95-117, 159-181, 248-270, 285-307, 442-464, 507-529, 575-597, 612-634 and 737-759; uncharacterized protein 273932 3863404 TA16370 Theileria annulata uncharacterized protein XP_953665.1 270921 R 5874 CDS TA16365 3863403 complement(join(274186..274976,275034..275508,275576..275731)) 1 1 NC_011129.2 Tap821d03.p1c.cand.77 - score = 102.13; SMART 2 pfam:RCC1 (PF00415) domains at aa 111-173, E()=2.20e-02; and aa 176-226, E()=4.40e-05; uncharacterized protein 275731 3863403 TA16365 Theileria annulata uncharacterized protein XP_953666.1 274186 R 5874 CDS TA16360 3863402 complement(join(275835..276017,276097..278462,278520..278805,278861..279220)) 1 1 NC_011129.2 Tap821d03.p1c.cand.77 - score = 102.13; SMART pfam:Myosin_N (PF02736) at aa 38-81, E()=1.10e-03; MYSc (SM00242) at aa 84-802, E()=2.64e-186; 4 IQ (SM00015) domains, at aa 875-897, E()=6.16e-02; 940-962, E()=3.35e-03; 969-991, E()=3.68e+00; 995-1017, E()=8.00e-01; myosin, putative 279220 3863402 TA16360 Theileria annulata myosin, putative XP_953667.1 275835 R 5874 CDS TA16355 3863401 join(280143..280368,280403..281181) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.35 - score = 22.72; uncharacterized protein 281181 3863401 TA16355 Theileria annulata uncharacterized protein XP_953668.1 280143 D 5874 CDS TA16345 3863399 282009..283472 1 1 NC_011129.2 Tap821d03.p1c.C.cand.36 - score = 35.90; SMART STYKc (SM00221) at aa 263-485, E()=1.98e+00; uncharacterized protein 283472 3863399 TA16345 Theileria annulata uncharacterized protein XP_953669.1 282009 D 5874 CDS TA16340 3863398 283640..285211 1 1 NC_011129.2 Tap821d03.p1c.C.cand.37 - score = 41.33; SMART ArfGap (SM00105) at aa 21-141, E()=1.03e-21; ADP-ribosylation factor (ARF) GTP-ase activating protein, putative 285211 3863398 TA16340 Theileria annulata ADP-ribosylation factor (ARF) GTP-ase activating protein, putative XP_953670.1 283640 D 5874 CDS TA16335 3863397 complement(join(285263..285762,285824..285941)) 1 1 NC_011129.2 Tap821d03.p1c.cand.76 - score = 17.95; SMART pfam:pro_isomerase (PF00160) at aa 27-205, E()=1.10e-60; cyclophilin, putative 285941 3863397 TA16335 Theileria annulata cyclophilin, putative XP_953671.1 285263 R 5874 CDS TA16330 3863396 complement(join(286040..286121,286216..286358,286426..286966,287021..287464,287600..287826)) 1 1 NC_011129.2 Tap821d03.p1c.cand.75 - score = 78.60; SMART 2 pfam:PseudoU_synth1 (PF01416) domains at aa 73-226, E()=5.10e-09 and at 302-408, 3.70e-07; tRNA pseudouridine synthase, putative 287826 3863396 TA16330 Theileria annulata tRNA pseudouridine synthase, putative XP_953672.1 286040 R 5874 CDS TA16325 3863395 complement(join(288078..288164,288234..288285,288339..288518,288550..288928,288959..288989,289046..289141)) 1 1 NC_011129.2 Tap821d03.p1c.cand.75 - score = 78.60; SMART pfam:ATP-bind (PF03029) at aa 1-242, E()=8.10e-66; uncharacterized protein 289141 3863395 TA16325 Theileria annulata uncharacterized protein XP_953673.1 288078 R 5874 CDS TA16320 3863394 complement(join(289342..289435,289486..289592,289693..289904,289937..290096,290132..290677)) 1 1 NC_011129.2 Tap821d03.p1c.cand.75 - score = 78.60; SMART 3 pfam:mito_carr (PF00153) domains at aa 26-116, E()=1.30e-24; 125-217, E()=7.50e-05; 228-31, E()=2.40e-05; mitochondrial phosphate carrier protein, putative 290677 3863394 TA16320 Theileria annulata mitochondrial phosphate carrier protein, putative XP_953674.1 289342 R 5874 CDS TA16315 3863393 complement(join(290834..290938,290973..291051,291084..291187,291220..291569,291626..291680,291742..291819)) 1 1 NC_011129.2 Tap821d03.p1c.cand.74 - score = 33.27; SMART pfam:pro_isomerase (PF00160) at aa 8-202, E()=4.30e-21; cyclophilin, putative 291819 3863393 TA16315 Theileria annulata cyclophilin, putative XP_953675.1 290834 R 5874 CDS TA16310 3863392 complement(join(292131..292226,292279..292561,292595..292629,292683..292763,292831..292978,293100..293236,293308..295428)) 1 1 NC_011129.2 SMART KISc (SM00129) at aa 371-699, E()=4.95e-92; kinesin, putative 295428 3863392 TA16310 Theileria annulata kinesin, putative XP_953676.1 292131 R 5874 CDS TA16305 3863391 join(296018..296309,296375..296805) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.38 - score = 29.86; SMART pfam:EF1BD (PF00736) at aa 127-240, E()=2.50e-15; translation elongation factor E1-F beta, putative 296805 3863391 TA16305 Theileria annulata translation elongation factor E1-F beta, putative XP_953677.1 296018 D 5874 CDS TA16300 3863390 complement(join(296878..297043,297093..297198,297239..298168,298252..298425,298491..298722)) 1 1 NC_011129.2 Tap821d03.p1c.cand.72 - score = 33.72; uncharacterized protein 298722 3863390 TA16300 Theileria annulata uncharacterized protein XP_953678.1 296878 R 5874 CDS TA16295 3863606 join(299020..299259,299299..299379,299464..299579,299620..299962,299991..300134,300192..300320,300351..300531,300611..300756) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.39 - score = 59.28; SMART aminotran_5 (PF00266) at aa 74-445, E()=1.30e-08; cysteine desulfurase, putative 300756 3863606 TA16295 Theileria annulata cysteine desulfurase, putative XP_953679.1 299020 D 5874 CDS TA16290 3863605 join(300813..301140,301208..301334,301399..301455,301487..301705,301768..301860,301893..302223,302242..302373) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.39 - score = 59.28; uncharacterized protein 302373 3863605 TA16290 Theileria annulata uncharacterized protein XP_953680.1 300813 D 5874 CDS TA16285 3863604 302569..303957 1 1 NC_011129.2 Tap821d03.p1c.C.cand.40 - score = 15.85; SMART 10 transmembrane domains at aa 21-40, 111-133, 145-167, 172-194, 207-229, 259-281, 294-312, 335-357, 378-400and 410-432; 10 probable transmembrane helices predicted for TA16285 by TMHMM2.0 at aa 21-40, 111-133, 145-167, 172-194, 207-229, 259-281, 294-312, 335-357, 378-400 and 410-432; Tpr-related protein family member, putative 303957 3863604 TA16285 Theileria annulata Tpr-related protein family member, putative XP_953681.1 302569 D 5874 CDS TA16280 3863603 304080..306779 1 1 NC_011129.2 Tap821d03.p1c.C.cand.41 - score = 51.80; SMART 11 transmembrane domains at aa 20-39, 504-526, 533-555, 560-582, 595-617, 653-675, 688-706, 739-761, 782-804, 814-836, 871-893; 11 probable transmembrane helices predicted for TA16280 by TMHMM2.0 at aa 20-39, 504-526, 533-555, 560-582, 595-617, 653-675, 688-706, 739-761, 782-804, 814-836 and 871-893; Tpr-related protein family member, putative 306779 3863603 TA16280 Theileria annulata Tpr-related protein family member, putative XP_953682.1 304080 D 5874 CDS TA16275 3863602 complement(join(306854..307177,307207..307263,307304..307405,307436..307727,307780..307933,307963..308008,308107..308196)) 1 1 NC_011129.2 Tap821d03.p1c.cand.71 - score = 31.15; SMART 5 WD40 (SM00320) domains at aa 1-38, E()=1.07e+00; 41-80, E()=2.44e-03; 144-183, E()=1.98e+01; 200-239, E()=9.52e-06; 304-343, E()=1.55e-05; eukaryotic translation initiation factor 3 (eIF3), subunit, putative 308196 3863602 TA16275 Theileria annulata eukaryotic translation initiation factor 3 (eIF3), subunit, putative XP_953683.1 306854 R 5874 CDS TA16270 3863601 complement(308456..310156) 1 1 NC_011129.2 Tap821d03.p1c.cand.70 - score = 58.73; Signal peptide predicted for TA16270 by SignalP 2.0 HMM (Signal peptide probability 0.910, signal anchor probability 0.000) with cleavage site probability 0.630 between residues 25 and 26; uncharacterized protein 310156 3863601 TA16270 Theileria annulata uncharacterized protein XP_953684.1 308456 R 5874 CDS TA16265 3863600 complement(join(310543..311012,311067..311243,311273..311744)) 1 1 NC_011129.2 Tap821d03.p1c.cand.69 - score = 28.31; SMART pfam:PDCD2_C (PF04194) at aa 171-361, E()=3.30e-09; apoptosis regulatory protein (programmed cell death protein 2 (PCDC2)) 311744 3863600 TA16265 Theileria annulata apoptosis regulatory protein (programmed cell death protein 2 (PCDC2)) XP_953685.1 310543 R 5874 CDS TA16260 3863599 join(312127..312190,312272..312861) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.42 - score = 23.55; uncharacterized protein 312861 3863599 TA16260 Theileria annulata uncharacterized protein XP_953686.1 312127 D 5874 CDS TA16255 3863598 complement(join(312882..312950,312982..313068,313201..313457,313493..313577,313627..314002,314059..314506,314541..314861,314923..315031,315096..315203,315235..315417,315458..317095)) 1 1 NC_011129.2 Tap821d03.p1c.cand.68 - score = 90.31; SMART pfam:GTP_EFTU (PF00009) at aa 12-333, E()=9.00e-61; pfam:EFG_C (PF00679) at aa 1081-1170, E()=6.00e-17; elongation factor 2, putative 317095 3863598 TA16255 Theileria annulata elongation factor 2, putative XP_953687.1 312882 R 5874 CDS TA16250 3863597 complement(join(317286..317461,317505..317794,317847..318007)) 1 1 NC_011129.2 Tap821d03.p1c.cand.67 - score = 16.82; Signal peptide predicted for TA16250 by SignalP 2.0 HMM (Signal peptide probability 0.673, signal anchor probability 0.178) with cleavage site probability 0.328 between residues 30 and 31; uncharacterized protein 318007 3863597 TA16250 Theileria annulata uncharacterized protein XP_953688.1 317286 R 5874 CDS TA16235 3863594 join(318681..318733,318800..318852,318883..318986,319018..319176,319246..319365,319395..319616) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.43 - score = 29.31; SMART pfam:NAP (PF00956) at aa 30-219, E()=1.80e-09; nucleosome assembly protein (NAP), putative 319616 3863594 TA16235 Theileria annulata nucleosome assembly protein (NAP), putative XP_953689.1 318681 D 5874 CDS TA16230 3863593 complement(319687..322212) 1 1 NC_011129.2 Tap821d03.p1c.cand.66 - score = 44.32; uncharacterized protein 322212 3863593 TA16230 Theileria annulata uncharacterized protein XP_953690.1 319687 R 5874 CDS TA16225 3863592 complement(join(322379..323049,323082..323232)) 1 1 NC_011129.2 Tap821d03.p1c.cand.65 - score = 25.08; SMART pfam:Hydrolase (PF00702) at aa 10-243, E()=4.50e-03; haloacid dehalogenase-like family hydrolase, putative 323232 3863592 TA16225 Theileria annulata haloacid dehalogenase-like family hydrolase, putative XP_953691.1 322379 R 5874 CDS TA16220 3863591 complement(join(323701..324428,324455..324692)) 1 1 NC_011129.2 Tap821d03.p1c.cand.64 - score = 23.63; 1 probable transmembrane helix predicted for TA16220 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA16220 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.008) with cleavage site probability 0.977 between residues 26 and 27; uncharacterized protein 324692 3863591 TA16220 Theileria annulata uncharacterized protein XP_953692.1 323701 R 5874 CDS TA16215 3863590 complement(join(325090..325763,325878..326097)) 1 1 NC_011129.2 Tap821d03.p1c.cand.63 - score = 19.62; SMART pfam:Hydrolase (PF00702) at aa 33-267, E()=1.20e-02; Signal peptide predicted for TA16215 by SignalP 2.0 HMM (Signal peptide probability 0.985, signal anchor probability 0.000) with cleavage site probability 0.934 between residues 20 and 21; haloacid dehalogenase-like family hydrolase, putative 326097 3863590 TA16215 Theileria annulata haloacid dehalogenase-like family hydrolase, putative XP_953693.1 325090 R 5874 CDS TA16210 3863589 join(326392..326451,326493..326721,326757..327273,327309..327662,327693..327783) 1 1 NC_011129.2 SMART 1 transmembrane domain at aa 91-113; 1 probable transmembrane helix predicted for TA16210 by TMHMM2.0 at aa 91-113; GPI-Anchor Signal predicted for TA16210 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 327783 3863589 TA16210 Theileria annulata uncharacterized protein XP_953694.1 326392 D 5874 CDS TA16205 3863588 327906..328385 1 1 NC_011129.2 Tap821d03.p1c.C.cand.44 - score = 22.81; Signal peptide predicted for TA16205 by SignalP 2.0 HMM (Signal peptide probability 0.779, signal anchor probability 0.000) with cleavage site probability 0.427 between residues 21 and 22; uncharacterized protein 328385 3863588 TA16205 Theileria annulata uncharacterized protein XP_953695.1 327906 D 5874 CDS TA16200 3864150 complement(join(328472..329193,329226..329415)) 1 1 NC_011129.2 Signal peptide predicted for TA16200 by SignalP 2.0 HMM (Signal peptide probability 0.812, signal anchor probability 0.000) with cleavage site probability 0.526 between residues 17 and 18; haloacid dehalogenase-like family hydrolase, putative 329415 3864150 TA16200 Theileria annulata haloacid dehalogenase-like family hydrolase, putative XP_953696.1 328472 R 5874 CDS TA16195 3864149 complement(join(329799..330472,330505..330712)) 1 1 NC_011129.2 Tap821d03.p1c.cand.61 - score = 23.28; SMART pfam:Hydrolase (PF00702) at aa 29-263, E()=4.00e-02; Signal peptide predicted for TA16195 by SignalP 2.0 HMM (Signal peptide probability 0.979, signal anchor probability 0.005) with cleavage site probability 0.746 between residues 16 and 17; haloacid dehalogenase-like family hydrolase, putative 330712 3864149 TA16195 Theileria annulata haloacid dehalogenase-like family hydrolase, putative XP_953697.1 329799 R 5874 CDS TA16190 3864148 complement(join(330967..331637,331670..331877)) 1 1 NC_011129.2 Tap821d03.p1c.cand.60 - score = 24.07; Signal peptide predicted for TA16190 by SignalP 2.0 HMM (Signal peptide probability 0.979, signal anchor probability 0.005) with cleavage site probability 0.746 between residues 16 and 17; haloacid dehalogenase-like family hydrolase, putative 331877 3864148 TA16190 Theileria annulata haloacid dehalogenase-like family hydrolase, putative XP_953698.1 330967 R 5874 CDS TA16185 3864147 complement(join(332132..332805,332865..333027)) 1 1 NC_011129.2 SMART pfam:Hydrolase (PF00702) at aa 14-249, E()=1.60e-02; haloacid dehalogenase-like family hydrolase, putative 333027 3864147 TA16185 Theileria annulata haloacid dehalogenase-like family hydrolase, putative XP_953699.1 332132 R 5874 CDS TA16180 3864146 complement(join(333634..333878,333910..334018,334049..334309,334341..334507,334541..335273)) 1 1 NC_011129.2 Tap821d03.p1c.cand.58 - score = 48.05; SMART S_TKc (SM00220) at aa 50-307, E()=8.70e-106; 4 EFh (SM00054) domains at aa 357-385, E()=4.06e-02; 404-432, E()=4.74e-03; 440-468, E()=4.60e-01; 474-502, E()=1.53e-06; calmodulin-like domain protein kinase, putative 335273 3864146 TA16180 Theileria annulata calmodulin-like domain protein kinase, putative XP_953700.1 333634 R 5874 CDS TA16175 3864145 complement(join(335659..335759,335793..335934,335963..336038,336066..336271,336300..336495,336532..336632,336662..336786,336818..336953,336996..337136)) 1 1 NC_011129.2 Tap821d03.p1c.cand.57 - score = 82.19; SMART pfam:TGT (PF01702) at aa 128-368, E()=1.50e-102; queuine tRNA-ribosyltransferase, putative 337136 3864145 TA16175 Theileria annulata queuine tRNA-ribosyltransferase, putative XP_953701.1 335659 R 5874 CDS TA16170 3864144 complement(join(337279..337893,337924..338176,338206..338534)) 1 1 NC_011129.2 SMART TFIIE (SM00531) at aa 45-204, E()=1.49e-03; transcription factor TFIIE, putative 338534 3864144 TA16170 Theileria annulata transcription factor TFIIE, putative XP_953702.1 337279 R 5874 CDS TA16165 3864143 339163..339558 1 1 NC_011129.2 Tap821d03.p1c.C.cand.45 - score = 7.87; SMART UBQ (SM00213) at aa 1-72, E()=4.28e-36; ZnF_NFX (SM0043) at aa 110-120, E()=0.00e+00; pfam:Ribosomal_L40e (PF01020) at aa 77-128, E()=3.20e-29; ubiquitin/60S ribosomal fusion protein, putative 339558 3864143 TA16165 Theileria annulata ubiquitin/60S ribosomal fusion protein, putative XP_953703.1 339163 D 5874 CDS TA16160 3864142 340651..342075 1 1 NC_011129.2 Tap821d03.p1c.C.cand.46 - score = 29.09; SMART pfam:sugar_tr (PF00081) at aa 12-473, E()=2.80e-34; 12 probable transmembrane helices predicted for TA16160 by TMHMM2.0 at aa 7-29, 58-80, 92-114, 118-140, 147-169, 189-211, 279-301, 316-338, 345-363, 378-400, 413-435 and 440-462; Signal peptide predicted for TA16160 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.018) with cleavage site probability 0.293 between residues 24 and 25; hexose transporter, putative 342075 3864142 TA16160 Theileria annulata hexose transporter, putative XP_953704.1 340651 D 5874 CDS TA16155 3864141 join(342194..342224,342254..342512,342646..342778,342834..342911,342944..343227,343351..343555) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.47 - score = 17.70; SMART HATPase_c (SM00387) at aa 18-133, E()=1.02e-01; uncharacterized protein 343555 3864141 TA16155 Theileria annulata uncharacterized protein XP_953705.1 342194 D 5874 CDS TA16150 3864140 complement(join(344123..344235,344265..344603,344636..344768,344801..345006,345037..345118)) 1 1 NC_011129.2 SMART 5 transmembrane domains at aa 63-82, 103-125, 140-170, 226-245 and 260-282; 5 probable transmembrane helices predicted for TA16150 by TMHMM2.0 at aa 63-82, 103-125, 140-170, 226-245 and 260-282; uncharacterized protein 345118 3864140 TA16150 Theileria annulata uncharacterized protein XP_953706.1 344123 R 5874 CDS TA16145 3864139 complement(join(345973..346250,346282..346441,346472..346591,346621..346742,346772..347056,347094..347199)) 1 1 NC_011129.2 Tap821d03.p1c.cand.53 - score = 24.75; SMART pfam:DnaJ (PF00226) at aa 58-126, E()=4.00e-03; 5 transmembrane domains at aa 5-27, 138-160 173-195, 210-232 and 333-355; 5 probable transmembrane helices predicted for TA16145 by TMHMM2.0 at aa 5-27, 138-160, 173-195, 210-232 and 333-355; Signal peptide predicted for TA16145 by SignalP 2.0 HMM (Signal peptide probability 0.636, signal anchor probability 0.002) with cleavage site probability 0.267 between residues 16 and 17; GPI-Anchor Signal predicted for TA16145 by DGPI v2.04, no cleavage site predicted; DnaJ-like molecular chaperone, putative 347199 3864139 TA16145 Theileria annulata DnaJ-like molecular chaperone, putative XP_953707.1 345973 R 5874 CDS TA16140 3864138 join(347517..348347,348382..348947,348977..349113,349142..349269,349299..349469,349501..349695) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.48 - score = 58.70; uncharacterized protein 349695 3864138 TA16140 Theileria annulata uncharacterized protein XP_953708.1 347517 D 5874 CDS TA17100 3864311 complement(join(349697..350701,350743..350907)) 1 1 NC_011129.2 Tap821d03.p1c.cand.52 - score = 23.99; uncharacterized protein 350907 3864311 TA17100 Theileria annulata uncharacterized protein XP_953709.1 349697 R 5874 CDS TA17095 3864310 join(351276..351934,351967..352111,352143..352261,352293..352485,352516..352591,352632..352719,352752..352905,352938..353099,353132..353217,353241..353291,353362..353545) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.49 - score = 44.21; SMART SANT (SM00717) at aa 209-263, E()=2.74e-02; ZnF_NFX (SM00438) at aa 476-496, E()=0.00e+00; 1 transmembrane domain at aa 600-622; 1 probable transmembrane helix predicted for TA17095 by TMHMM2.0 at aa 600-622; uncharacterized protein 353545 3864310 TA17095 Theileria annulata uncharacterized protein XP_953710.1 351276 D 5874 CDS TA17090 3864309 join(353728..356338,356406..358706,358754..359136) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.50 - score = 128.10; SMART pfam:Noti (PF04054) at aa 1377-1760, E()=1.00e-06; uncharacterized protein 359136 3864309 TA17090 Theileria annulata uncharacterized protein XP_953711.1 353728 D 5874 CDS TA17085 3864308 join(359237..359289,359320..359377,359423..359569,359599..360108,360137..360232,360259..360374,360403..360469) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.51 - score = 60.96; SMART WW (SM00456) at aa 13-45, E()=8.47e-07; pfam:FF (PF01846) at aa 64-112, E()=3.60e-05; uncharacterized protein 360469 3864308 TA17085 Theileria annulata uncharacterized protein XP_953712.1 359237 D 5874 CDS TA17080 3864444 join(360639..360839,360875..360947,360985..361098,361137..361255,361288..361350,361383..361621,361652..361721,361756..361932) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.51 - score = 60.96; replication factor C subunit, putative 361932 3864444 TA17080 Theileria annulata replication factor C subunit, putative XP_953713.1 360639 D 5874 CDS TA17075 3864443 complement(join(362289..362921,362952..363120,363150..363217,363246..363360,363391..363641,363670..363819)) 1 1 NC_011129.2 Tap821d03.p1c.cand.49 - score = 44.54; uncharacterized protein 363819 3864443 TA17075 Theileria annulata uncharacterized protein XP_953714.1 362289 R 5874 CDS TA17070 3864442 join(363932..364084,364125..364250,364285..364578,364610..364781,364812..364900,364932..365054,365092..365184,365214..365363,365393..365446,365503..365601) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.52 - score = 117.86; uncharacterized protein 365601 3864442 TA17070 Theileria annulata uncharacterized protein XP_953715.1 363932 D 5874 CDS TA17065 3864441 join(365735..365880,365926..366112,366148..366521,366553..366745,366778..366921,366953..367039,367073..367185,367247..367676,367707..367783,367818..368035,368067..368221) 1 1 NC_011129.2 SMART 2 SANT (SM00717) at aa 6-55, E()=1.62e-13; 58-105, E()=3.32e-10; Myb-like DNA binding protein (CDC5) 368221 3864441 TA17065 Theileria annulata Myb-like DNA binding protein (CDC5) XP_953716.1 365735 D 5874 CDS TA17060 3864440 join(368770..368881,368925..369036,369068..370403) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.53 - score = 45.89; ms1orf2 protein, putative 370403 3864440 TA17060 Theileria annulata ms1orf2 protein, putative XP_953717.1 368770 D 5874 CDS TA17055 3864439 370622..371227 1 1 NC_011129.2 Tap821d03.p1c.C.cand.54 - score = 13.99; Signal peptide predicted for TA17055 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.001) with cleavage site probability 0.417 between residues 16 and 17; uncharacterized protein 371227 3864439 TA17055 Theileria annulata uncharacterized protein XP_953718.1 370622 D 5874 CDS TA17050 3864438 complement(371415..372260) 1 1 NC_011129.2 Tap821d03.p1c.cand.48 - score = 27.39; SMART pfam:EMA (PF02408) at aa 1-280, E()=1.40e-191; 1 probable transmembrane helix predicted for TA17050 by TMHMM2.0 at aa 261-280; Signal peptide predicted for TA17050 by SignalP 2.0 HMM (Signal peptide probability 0.995, signal anchor probability 0.002) with cleavage site probability 0.953 between residues 22 and 23; GPI-Anchor Signal predicted for TA17050 by DGPI v2.04 with cleavage site probability 1.1019999 near 247; merozoite-piroplasm surface antigen Tams1 372260 3864438 TA17050 Theileria annulata merozoite-piroplasm surface antigen Tams1 XP_953719.1 371415 R 5874 CDS TA17045 3864437 join(372803..372949,373016..373087,373169..373333,373379..373442,373472..373698,373730..374214,374249..374354) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.55 - score = 31.14; uncharacterized protein 374354 3864437 TA17045 Theileria annulata uncharacterized protein XP_953720.1 372803 D 5874 CDS TA17040 3864436 complement(join(374921..375512,375563..375782,375815..376834,376869..377220)) 1 1 NC_011129.2 Tap821d03.p1c.cand.46 - score = 31.98; SMART ZnF_NFX (SM00438) at aa 144-163, E()=0.00e+00; uncharacterized protein 377220 3864436 TA17040 Theileria annulata uncharacterized protein XP_953721.1 374921 R 5874 CDS TA17035 3864435 complement(join(377564..377614,377648..377733,377825..377990,378054..378896,378939..379063,379095..379487,379540..379616,379649..380088)) 1 1 NC_011129.2 Tap821d03.p1c.cand.45 - score = 65.46; SMART pfam:GST_C (PF00043) at aa 56-172, E()=1.90e-03; pfam:tRNA-synt_1c (PF00749) at aa 214-520, E()=4.20e-131; pfam:tRNA-synt-1c_C (PF03950) at aa 522-696, E()=1.90e-35; glutamyl-tRNA synthetase, putative 380088 3864435 TA17035 Theileria annulata glutamyl-tRNA synthetase, putative XP_953722.1 377564 R 5874 CDS TA17030 3864434 join(380992..381049,381130..381506,381540..381596,381633..381758,381790..381936) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.56 - score = 21.14; SMART pfam:RNase_PH (PF01138) at aa 15-135, E()=1.40e-06; 3' exonuclease, exosome component, putative 381936 3864434 TA17030 Theileria annulata 3' exonuclease, exosome component, putative XP_953723.1 380992 D 5874 CDS TA17025 3864433 join(382462..382480,382621..383378) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.57 - score = 21.90; SMART pfam:Ribosomal_L2 (PF00181) at aa 11-90, E()=3.20e-22; pfam:Ribosomal_L2_C (PF03947) at aa 96-231, E()=6.70e-64; 60S ribosomal protein L2/L8, putative 383378 3864433 TA17025 Theileria annulata 60S ribosomal protein L2/L8, putative XP_953724.1 382462 D 5874 CDS TA17020 3864432 join(383818..384053,384147..384251,384282..384552,384615..385323,385367..385542,385625..386213,386259..386598,386675..387038) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.58 - score = 80.20; SMART pfam:aconitase (PF00330) at aa 79-586, E()=2.90e-210; pfam:Aconitase_C (PF00694) at aa 716-898, E()=1.30e-62; iron-responsive element binding protein/aconitase, putative 387038 3864432 TA17020 Theileria annulata iron-responsive element binding protein/aconitase, putative XP_953725.1 383818 D 5874 CDS TA17015 3864431 complement(387115..388746) 1 1 NC_011129.2 Tap821d03.p1c.cand.44 - score = 21.90; SMART 9 transmembrane domains at aa 30-52, 143-165, 175-197, 239-261, 291-313, 326-344, 395-417, 438-460 and 470-492; 9 probable transmembrane helices predicted for TA17015 by TMHMM2.0 at aa 30-52, 143-165, 175-197, 239-261, 291-313, 326-344, 395-417, 438-460 and 470-492; Tpr-related protein family member, putative 388746 3864431 TA17015 Theileria annulata Tpr-related protein family member, putative XP_953726.1 387115 R 5874 CDS TA17010 3864430 complement(join(388937..389257,389319..389472,389541..389619,389683..390267,390321..390387)) 1 1 NC_011129.2 Tap821d03.p1c.cand.43 - score = 87.19; SMART pfam:Patatin (PF01734) at aa 78-279, E()=2.80e-05; patatin-family phospholipase, putative 390387 3864430 TA17010 Theileria annulata patatin-family phospholipase, putative XP_953727.1 388937 R 5874 CDS TA17005 3864429 complement(390530..392536) 1 1 NC_011129.2 Tap821d03.p1c.cand.43 - score = 87.19; uncharacterized protein 392536 3864429 TA17005 Theileria annulata uncharacterized protein XP_953728.1 390530 R 5874 CDS TA17000 3864428 join(392914..393320,393384..393558) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.59 - score = 14.44; uncharacterized protein 393558 3864428 TA17000 Theileria annulata uncharacterized protein XP_953729.1 392914 D 5874 CDS TA16995 3864427 complement(join(393619..393819,393852..394009,394041..394107,394138..394214,394280..394422,394455..394706,394737..395023)) 1 1 NC_011129.2 Tap821d03.p1c.cand.42 - score = 40.81; SMART pfam:Euk_porin (PF01459) at aa 101-375, E()=8.40e-06; porin, putative 395023 3864427 TA16995 Theileria annulata porin, putative XP_953730.1 393619 R 5874 CDS TA16990 3864426 complement(join(395568..395833,395863..396590,396639..396728,396746..397043,397073..397160,397191..397359,397389..397539,397573..397975)) 1 1 NC_011129.2 Tap821d03.p1c.cand.41 - score = 65.19; SMART pfam:GTP_EFTU (PF00009) at aa 106-289, E()=2.70e-52; pfam:ras (PF00071) at aa 120-287, E()=9.50e-03; pfam:ParA (PF00991) at aa 140-242, E()=7.80e-02; pfam:GTP_EFTU_D2 (PF03144) at aa 319-394, E()=1.40e-02; pfam:EFG_C (PF00679) at aa 520-621, E()=1.30e-14; GTP-binding protein, LepA subfamily, putative 397975 3864426 TA16990 Theileria annulata GTP-binding protein, LepA subfamily, putative XP_953731.1 395568 R 5874 CDS TA16985 3863389 join(398805..398925,398958..399290,399320..399454,399486..399641,399672..400019,400051..400371,400402..401594,401628..402429,402459..402567,402603..405467,405506..406628) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.61 - score = 156.85; SMART pfam:TNFR_c6 (PF00020) at aa 1058-1092, E()=2.80e-02; 3 EGF (SM00181) domains at aa 1489-1538, E()=4.83e+01; aa 1612-1682, E()=4.74e+01; aa 1720-1760, E()=4.83e+01; 8 transmembrane domains at aa 1770-1792, 1799-1821, 1877-1899, 2023-2045, 2073-2095, 2102-2121, 2141-2160 and 2167-2189; 8 probable transmembrane helices predicted for TA16985 by TMHMM2.0 at aa 1770-1792, 1799-1821, 1877-1899, 2023-2045, 2073-2095, 2102-2121, 2141-2160 and 2167-2189; cysteine repeat modular protein 2 406628 3863389 TA16985 Theileria annulata cysteine repeat modular protein 2 XP_953732.1 398805 D 5874 CDS TA16980 3863388 complement(join(406644..407868,407907..413262,413294..413686,413716..414126,414158..414400,414437..414679,414710..414982,415015..415165,415197..415238,415270..415329)) 1 1 NC_011129.2 Tap821d03.p1c.cand.40 - score = 150.90; SMART KR (SM00130) at aa 269-336, E()=2.14e-02; 5 EGF (SM00181) domains, at aa 1309-1368, E()=4.37e+01; 1369-1426, E()=7.23e+01; 17521801, E()=4.83e+01; 1875-1925, E()=4.74e+01; 1983-2023, E()=4.83e+01; ZnF_NFX (SM00438) at aa 1540-1579, E()=0.00e+00; 8 transmembrane domains at aa 2033-2055, 2062-2084, 2140-2162, 2286-2308, 2336-2358, 2363-2385, 2405-2422 and 2429-2451; 8 probable transmembrane helices predicted for TA16980 by TMHMM2.0 at aa 2033-2055, 2062-2084, 2140-2162, 2286-2308, 2336-2358, 2363-2385, 2405-2422 and 2429-2451; cysteine repeat modular protein 2 415329 3863388 TA16980 Theileria annulata cysteine repeat modular protein 2 XP_953733.1 406644 R 5874 CDS TA16975 3863387 complement(join(415554..415692,415727..416152,416183..416249,416334..416349)) 1 1 NC_011129.2 Tap821d03.p1c.cand.39 - score = 28.44; SMART pfam:CLP_protease (PF00574) at aa 15-208, E()=1.20e-69; ATP-dependent Clp-like protease, putative 416349 3863387 TA16975 Theileria annulata ATP-dependent Clp-like protease, putative XP_953734.1 415554 R 5874 CDS TA16970 3863386 complement(join(416797..416912,416951..417047,417079..417156)) 1 1 NC_011129.2 Tap821d03.p1c.cand.39 - score = 28.44; SMART UBQ (SM00213) at aa 19-30, E()=3.50e-09; ubiquitin-related protein, putative 417156 3863386 TA16970 Theileria annulata ubiquitin-related protein, putative XP_953735.1 416797 R 5874 CDS TA16965 3863385 complement(417432..422543) 1 1 NC_011129.2 Tap821d03.p1c.cand.38 - score = 99.86; uncharacterized protein 422543 3863385 TA16965 Theileria annulata uncharacterized protein XP_953736.1 417432 R 5874 CDS TA16960 3863384 join(422554..422860,422900..423186,423221..423307,423392..423611,423661..423797,423887..424027) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.62 - score = 34.15; uncharacterized protein 424027 3863384 TA16960 Theileria annulata uncharacterized protein XP_953737.1 422554 D 5874 CDS TA16955 3863383 424207..424518 1 1 NC_011129.2 Tap821d03.p1c.C.cand.63 - score = 11.92; uncharacterized protein 424518 3863383 TA16955 Theileria annulata uncharacterized protein XP_953738.1 424207 D 5874 CDS TA16950 3863382 complement(join(424537..424714,424768..426314)) 1 1 NC_011129.2 Tap821d03.p1c.cand.37 - score = 22.94; uncharacterized protein 426314 3863382 TA16950 Theileria annulata uncharacterized protein XP_953739.1 424537 R 5874 CDS TA16945 3863381 join(426463..426525,426556..427665) 1 1 NC_011129.2 SMART SANT (SM00213) at aa 19-30, E()=3.50e-09; uncharacterized protein 427665 3863381 TA16945 Theileria annulata uncharacterized protein XP_953740.1 426463 D 5874 CDS TA16940 3863380 complement(join(427727..427987,428050..428383,428615..428918,428993..429478,429511..429695,429754..429980)) 1 1 NC_011129.2 uncharacterized protein 429980 3863380 TA16940 Theileria annulata uncharacterized protein XP_953741.1 427727 R 5874 CDS TA16935 3863379 complement(join(430129..430416,430506..430658,430700..430846)) 1 1 NC_011129.2 Tap821d03.p1c.cand.36 - score = 48.72; SMART RRM (SM00360) at aa 14-87, E()=4.81e-26; nucleolar phosphoprotein (Nopp34) 430846 3863379 TA16935 Theileria annulata nucleolar phosphoprotein (Nopp34) XP_953742.1 430129 R 5874 CDS TA16930 3863378 complement(430953..432266) 1 1 NC_011129.2 Tap821d03.p1c.cand.35 - score = 32.38; SMART pfam:AAR2 (PF05282) at aa 1-424, E()=1.10e-04; uncharacterized protein 432266 3863378 TA16930 Theileria annulata uncharacterized protein XP_953743.1 430953 R 5874 CDS TA16925 3863377 complement(join(432366..432909,433011..433135,433168..433520,433579..434029,434085..437879)) 1 1 NC_011129.2 Tap821d03.p1c.cand.34 - score = 103.92; Tap821d03.p1c.cand.34 - score = 103.92; SMART 3 WD40 (SM00320) domains, at aa 168-206, E()=8.96e-02; 209-255, E()=1.46e-01; 745-785, E()=1.07e+00; pfam:PHD (PF00628) at aa 1275-1336; BROMO (SM00297) at aa 1567-1668, E()=8.72e-04; uncharacterized protein 437879 3863377 TA16925 Theileria annulata uncharacterized protein XP_953744.1 432366 R 5874 CDS TA16920 3863376 complement(join(438037..438323,438386..438496,438562..439109,439196..439407,439493..439555)) 1 1 NC_011129.2 Tap821d03.p1c.cand.33 - score = 23.11; Tap821d03.p1c.cand.33 - score = 23.11; SMART STYKc (SM00221) at aa 12-273, E()=2.31e+00; protein kinase, putative 439555 3863376 TA16920 Theileria annulata protein kinase, putative XP_953745.1 438037 R 5874 CDS TA16915 3863375 join(440193..440387,440578..441536,441601..441916) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.65 - score = 30.85; SMART 6 WD40 (SM00320) domains at aa 31-70, E()=2.28e+02; 73-112, E()=3.68e+01; 115-154, E()=1.40e-03; 157-197, E()=1.75e-04; 201-238, E()=2.23e-01; 242-281, E()=3.71e-01; uncharacterized protein 441916 3863375 TA16915 Theileria annulata uncharacterized protein XP_953746.1 440193 D 5874 CDS TA16910 3863374 complement(join(441971..443093,443149..443258)) 1 1 NC_011129.2 Tap821d03.p1c.cand.32 - score = 20.58; uncharacterized protein 443258 3863374 TA16910 Theileria annulata uncharacterized protein XP_953747.1 441971 R 5874 CDS TA16905 3863373 join(443557..444511,444573..444793) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.66 - score = 25.07; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA16905 by TMHMM2.0 at aa 5-27; uncharacterized protein 444793 3863373 TA16905 Theileria annulata uncharacterized protein XP_953748.1 443557 D 5874 CDS TA16900 3863372 complement(444826..447021) 1 1 NC_011129.2 Tap821d03.p1c.cand.31 - score = 36.43; SMART 10 transmembrane domains at aa 12-34, 364-386, 393-415, 420-442, 455-477, 497-519, 526-548, 582-604, 625-644 and 654-686; 10 probable transmembrane helices predicted for TA16900 by TMHMM2.0 at aa 12-34, 364-386, 393-415, 420-442, 455-477, 497-519, 526-548, 582-604, 625-644 and 654-676; Tpr-related protein family member, putative 447021 3863372 TA16900 Theileria annulata Tpr-related protein family member, putative XP_953749.1 444826 R 5874 CDS TA16895 3863371 complement(447130..448863) 1 1 NC_011129.2 Tap821d03.p1c.cand.30 - score = 24.73; SMART 11 transmembrane domains at aa 20-39, 221-243, 253-275, 282-304, 319-341, 353-375, 379-401, 406-428, 453-475, 496-515 and 525-547; 11 probable transmembrane helices predicted for TA16895 by TMHMM2.0 at aa 20-39, 221-243, 253-275, 282-304, 319-341, 353-375, 379-401, 406-428, 453-475, 496-515 and 525-547; Signal anchor predicted for TA16895 by SignalP 2.0 HMM (Signal peptide probability 0.022, signal anchor probability 0.834) with cleavage site probability 0.006 between residues 41 and 42; Tpr-related protein family member, putative 448863 3863371 TA16895 Theileria annulata Tpr-related protein family member, putative XP_953750.1 447130 R 5874 CDS TA16890 3863370 complement(join(449015..449283,449314..449490,449535..449784,449824..450581,450648..450900,450976..451137)) 1 1 NC_011129.2 SMART pfam:tRNA-synt_1d (PF00750) at aa 84-496, E()=1.80e-10; arginyl-tRNA synthetase, putative 451137 3863370 TA16890 Theileria annulata arginyl-tRNA synthetase, putative XP_953751.1 449015 R 5874 CDS TA16885 3864208 complement(join(451540..451623,451691..451852,451911..452042,452112..452202,452277..452485)) 1 1 NC_011129.2 Tap821d03.p1c.cand.28 - score = 20.03; SMART pfam:Ribosomal_L10 (PF00466) at aa 17-127, E()=3.80e-02; 60S ribosomal protein L10e, putative 452485 3864208 TA16885 Theileria annulata 60S ribosomal protein L10e, putative XP_953752.1 451540 R 5874 CDS TA16880 3864207 join(452747..453556,453629..453784,453848..454186) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.67 - score = 23.12; SMART 1 transmembrane domain at aa 31-53; RING (SM00184) at aa 382-418, E()=1.79e-06; 1 probable transmembrane helix predicted for TA16880 by TMHMM2.0 at aa 31-53; Signal anchor predicted for TA16880 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.903) with cleavage site probability 0.001 between residues 55 and 56; uncharacterized protein 454186 3864207 TA16880 Theileria annulata uncharacterized protein XP_953753.1 452747 D 5874 CDS TA16875 3864206 454442..455776 1 1 NC_011129.2 Tap821d03.p1c.C.cand.68 - score = 13.93; SMART 11 transmembrane domains at aa 10-32, 52-74, 89-111, 118-140, 155-173, 180-202, 222-244, 257-279, 328-350, 370-392, 396-418; 11 probable transmembrane helices predicted for TA16875 by TMHMM2.0 at aa 10-32, 52-74, 89-111, 118-140, 155-173, 180-202, 222-244, 257-279, 328-350, 370-392 and 396-418; Tpr-related protein family member, putative 455776 3864206 TA16875 Theileria annulata Tpr-related protein family member, putative XP_953754.1 454442 D 5874 CDS TA16870 3864205 455911..458193 1 1 NC_011129.2 Tap821d03.p1c.C.cand.69 - score = 37.06; SMART 9 transmembrane domains at aa 47-69, 90-112, 122-144, 151-173, 188-210, 273-295, 604-626, 647-669, 674-693; 9 probable transmembrane helices predicted for TA16870 by TMHMM2.0 at aa 47-69, 90-112, 122-144, 151-173, 188-210, 273-295, 604-626, 647-669 and 674-693; Tpr-related protein family member, putative 458193 3864205 TA16870 Theileria annulata Tpr-related protein family member, putative XP_953755.1 455911 D 5874 CDS TA16865 3864204 complement(join(458241..458321,458360..461607,461659..461793,461894..462212)) 1 1 NC_011129.2 Tap821d03.p1c.cand.27 - score = 77.45; uncharacterized protein 462212 3864204 TA16865 Theileria annulata uncharacterized protein XP_953756.1 458241 R 5874 CDS TA16860 3864203 join(462572..462704,462829..462954,462995..463279,463342..463515,463648..463919) 1 1 NC_011129.2 SMART 4 transmembrane domains at aa 33-55, 75-97, 17-139, 274-296; 4 probable transmembrane helices predicted for TA16860 by TMHMM2.0 at aa 33-55, 75-97, 117-139 and 274-296; Signal anchor predicted for TA16860 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues 53 and 54; uncharacterized protein 463919 3864203 TA16860 Theileria annulata uncharacterized protein XP_953757.1 462572 D 5874 CDS TA16855 3864202 join(464093..464147,464257..464795,464888..466483) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.71 - score = 52.16; SMART DEXDc (SM00487) at aa 78-262, E()=9.96e-31; AAA (SM00382) at aa 2.02e-03; HELICc (SM00490) at aa 310-407, E()=1.18e-14; pfam:HA2 (PF04408) at aa 466-560 E()=1.80e-37; DEAD-box family helicase, putative 466483 3864202 TA16855 Theileria annulata DEAD-box family helicase, putative XP_953758.1 464093 D 5874 CDS TA16850 3864201 complement(join(466633..468719,468814..468985)) 1 1 NC_011129.2 Tap821d03.p1c.cand.26 - score = 51.28; SMART DnaJ (SM00271) at aa 499-518, E()=3.43e+00; uncharacterized protein 468985 3864201 TA16850 Theileria annulata uncharacterized protein XP_953759.1 466633 R 5874 CDS TA16845 3864200 join(469521..469953,470066..470117,470170..470270,470373..470463,470524..470851,470911..471046,471110..471639) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.72 - score = 29.22; SMART pfam:ThiF (PF00899) at aa 119-255, E()=3.70e-49; pfam:MoeZ_MoeB (PF05237) at aa 294-397, E()=8.10e-13; pfam:Rhodanese (PF00581) at aa 437-538, E()=2.10e-02; uncharacterized protein 471639 3864200 TA16845 Theileria annulata uncharacterized protein XP_953760.1 469521 D 5874 CDS TA16840 3864199 complement(join(473065..473487,473639..473739,473772..473843,473949..474174)) 1 1 NC_011129.2 Tap821d03.p1c.cand.25 - score = 14.28; SMART pfam:ATP-bind (PF03029) at aa 5-233, E()=1.30e-70; uncharacterized protein 474174 3864199 TA16840 Theileria annulata uncharacterized protein XP_953761.1 473065 R 5874 CDS TA16835 3864198 complement(join(474348..474541,474613..474747,474820..474949,475122..475301)) 1 1 NC_011129.2 Tap821d03.p1c.cand.24 - score = 8.46; uncharacterized protein 475301 3864198 TA16835 Theileria annulata uncharacterized protein XP_953762.1 474348 R 5874 CDS TA16830 3864197 join(475591..476590,476656..476972) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.73 - score = 16.70; SMART 1 transmembrane domain at aa 284-306; 2 pfam:MtN3_slv (PF03083) domains at aa 158-253, E()=1.80e-05; 326-413, E()=1.50e-05; 7 probable transmembrane helices predicted for TA16830 by TMHMM2.0 at aa 158-180, 201-223, 238-272, 284-306, 311-333, 364-382 and 386-408; Signal peptide predicted for TA16830 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.000) with cleavage site probability 0.901 between residues 16 and 17; uncharacterized protein 476972 3864197 TA16830 Theileria annulata uncharacterized protein XP_953763.1 475591 D 5874 CDS TA16825 3864196 join(477402..477671,477758..478894) 1 1 NC_011129.2 SMART ACTIN (SM00268) at aa 2-468, E()=2.35e-19; actin, putative 478894 3864196 TA16825 Theileria annulata actin, putative XP_953764.1 477402 D 5874 CDS TA16820 3864195 complement(479050..480120) 1 1 NC_011129.2 Tap821d03.p1c.cand.23 - score = 32.11; Signal peptide predicted for TA16820 by SignalP 2.0 HMM (Signal peptide probability 0.989, signal anchor probability 0.002) with cleavage site probability 0.811 between residues 17 and 18; uncharacterized protein 480120 3864195 TA16820 Theileria annulata uncharacterized protein XP_953765.1 479050 R 5874 CDS TA16815 3864194 complement(join(480869..481714,481805..481924,481975..482152,482219..482414,482454..482580,482706..483026)) 1 1 NC_011129.2 Tap821d03.p1c.cand.22 - score = 43.92; SMART pfam:DUF654 (PF04910) at aa 217-595, E()=9.90e-04; uncharacterized protein 483026 3864194 TA16815 Theileria annulata uncharacterized protein XP_953766.1 480869 R 5874 CDS TA16810 3864193 complement(join(483189..483561,483692..484545,484719..484817)) 1 1 NC_011129.2 Tap821d03.p1c.cand.21 - score = 27.27; SMART pfam:PseudoU_synth_2 (PF00849) at aa 144-323, E()=3.20e-33; (RNA) pseudouridylate synthase, putative 484817 3864193 TA16810 Theileria annulata (RNA) pseudouridylate synthase, putative XP_953767.1 483189 R 5874 CDS TA16805 3864192 484916..486829 1 1 NC_011129.2 Tap821d03.p1c.C.cand.75 - score = 62.54; uncharacterized protein 486829 3864192 TA16805 Theileria annulata uncharacterized protein XP_953768.1 484916 D 5874 CDS TA16800 3864191 487076..488194 1 1 NC_011129.2 Tap821d03.p1c.C.cand.75 - score = 62.54; SMART 1 transmembrane domain at aa 112-134; CPDc (SM00577) at aa 183-309, E()=1.05e-21; 1 probable transmembrane helix predicted for TA16800 by TMHMM2.0 at aa 112-134; uncharacterized protein 488194 3864191 TA16800 Theileria annulata uncharacterized protein XP_953769.1 487076 D 5874 CDS TA16795 3864190 complement(488616..490724) 1 1 NC_011129.2 Tap821d03.p1c.cand.20 - score = 41.34; SMART 9 transmembrane domains at aa 346-368, 375-397, 402-424, 437-459, 479-501, 508-530, 564-586, 606-628 and 634-656; 9 probable transmembrane helices predicted for TA16795 by TMHMM2.0 at aa 346-368, 375-397, 402-424, 437-459, 479-501, 508-530, 564-586, 606-628 and 634-656; Tpr-related protein family member, putative 490724 3864190 TA16795 Theileria annulata Tpr-related protein family member, putative XP_953770.1 488616 R 5874 CDS TA16790 3863694 complement(490820..493423) 1 1 NC_011129.2 Tap821d03.p1c.cand.19 - score = 103.70; SMART 10 transmembrane domains at aa 20-39, 505-527, 534-556, 561-583, 596-618, 654-676, 689-711, 740-762, 783-805 and 815-837; 10 probable transmembrane helices predicted for TA16790 by TMHMM2.0 at aa 20-39, 505-527, 534-556, 561-583, 596-618, 654-676, 689-711, 740-762, 783-805 and 815-837; Tpr-related protein family member, putative 493423 3863694 TA16790 Theileria annulata Tpr-related protein family member, putative XP_953771.1 490820 R 5874 CDS TA16785 3863693 complement(join(493630..493703,493733..493825,493852..494229,494261..494593,494629..494956,494999..495121,495168..495226,495257..495636,495699..496072)) 1 1 NC_011129.2 Tap821d03.p1c.cand.19 - score = 103.70; SMART pfam:dor1 (PF04124) at aa 3-354, E()=3.30e-02; pfam:Vps53_n (PF04100) at aa 14-423, E()=4.50e-13; uncharacterized protein 496072 3863693 TA16785 Theileria annulata uncharacterized protein XP_953772.1 493630 R 5874 CDS TA16780 3863692 join(496302..498231,498291..498742,498822..499127,499183..499569) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.76 - score = 78.15; SMART pfam:tRNA-synt_2c (PF01411) at aa 81-821, E()=1.90e-293; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA16780 by TMHMM2.0 at aa 2-24; Signal peptide predicted for TA16780 by SignalP 2.0 HMM (Signal peptide probability 0.620, signal anchor probability 0.295) with cleavage site probability 0.492 between residues 22 and 23; alanyl-tRNA synthetase, putative 499569 3863692 TA16780 Theileria annulata alanyl-tRNA synthetase, putative XP_953773.1 496302 D 5874 CDS TA16775 3863691 join(499698..499862,499892..500042,500073..500166,500233..500320,500357..500827,500905..501015) 1 1 NC_011129.2 SMART WD40 (SM00320) at aa 222-263, E()=1.92e-01; 267-309, E()=4.44e+00; uncharacterized protein 501015 3863691 TA16775 Theileria annulata uncharacterized protein XP_953774.1 499698 D 5874 CDS TA16770 3863690 join(501040..502171,502213..502472,502528..503046) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.77 - score = 65.55; or 7, fibronectin/fibrinogen-binding protein, putative; but no relevant pfam hit; uncharacterized protein 503046 3863690 TA16770 Theileria annulata uncharacterized protein XP_953775.1 501040 D 5874 CDS TA16765 3863689 complement(503205..504563) 1 1 NC_011129.2 Tap821d03.p1c.cand.18 - score = 16.91; SMART 10 transmembrane domains, at aa 20-42, 118-140, 147-169, 173-195, 216-238, 268-290, 303-325, 376-398, 419-441 and 451-473; 9 probable transmembrane helices predicted for TA16765 by TMHMM2.0 at aa 85-107, 114-136, 140-162, 183-205, 235-257, 270-292, 343-365, 386-408 and 418-440; Tpr-related protein family member, putative 504563 3863689 TA16765 Theileria annulata Tpr-related protein family member, putative XP_953776.1 503205 R 5874 CDS TA16760 3863688 complement(504832..506976) 1 1 NC_011129.2 Tap821d03.p1c.cand.17 - score = 37.49; uncharacterized protein 506976 3863688 TA16760 Theileria annulata uncharacterized protein XP_953777.1 504832 R 5874 CDS TA16755 3863687 join(507421..507684,507749..508868,508904..509024,509075..509309) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.79 - score = 48.88; uncharacterized protein 509309 3863687 TA16755 Theileria annulata uncharacterized protein XP_953778.1 507421 D 5874 CDS TA16750 3863686 complement(join(509875..510213,510245..510312,510364..510461,510490..510562,510593..510635,510666..510770,510801..510890)) 1 1 NC_011129.2 Tap821d03.p1c.cand.16 - score = 36.05; Signal peptide predicted for TA16750 by SignalP 2.0 HMM (Signal peptide probability 0.739, signal anchor probability 0.018) with cleavage site probability 0.560 between residues 23 and 24; uncharacterized protein 510890 3863686 TA16750 Theileria annulata uncharacterized protein XP_953779.1 509875 R 5874 CDS TA16745 3863685 join(511063..511136,511175..511692,511743..511801) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.80 - score = 17.34; SMART pfam:Rad10 (PF03834) at aa 10-76, E()=4.50e-20; DNA repair protein (RAD10) 511801 3863685 TA16745 Theileria annulata DNA repair protein (RAD10) XP_953780.1 511063 D 5874 CDS TA16740 3863684 512534..513265 1 1 NC_011129.2 Tap821d03.p1c.C.cand.81 - score = 18.75; uncharacterized protein 513265 3863684 TA16740 Theileria annulata uncharacterized protein XP_953781.1 512534 D 5874 CDS TA16735 3863683 513907..517137 1 1 NC_011129.2 Tap821d03.p1c.C.cand.82 - score = 29.23; SMART 11 transmembrane domains at aa 12-31, 41-61, 68-90, 94-113, 126-148, 158-180, 237-259, 279-301, 308-325, 340-362 and 764-786; 11 probable transmembrane helices predicted for TA16735 by TMHMM2.0 at aa 12-31, 41-61, 68-90, 94-113, 126-148, 158-180, 237-259, 279-301, 308-325, 340-362 and 764-786; Signal anchor predicted for TA16735 by SignalP 2.0 HMM (Signal peptide probability 0.004, signal anchor probability 0.936) with cleavage site probability 0.001 between residues 37 and 38; uncharacterized protein 517137 3863683 TA16735 Theileria annulata uncharacterized protein XP_953782.1 513907 D 5874 CDS TA16730 3863682 join(517305..517667,517734..518348) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.83 - score = 23.41; SMART pfam:Pribosyltran (PF00156) at aa 149-294, E()=8.10e-24; phosphoribosyl pyrophosphate synthetase, putative 518348 3863682 TA16730 Theileria annulata phosphoribosyl pyrophosphate synthetase, putative XP_953783.1 517305 D 5874 CDS TA16725 3863681 complement(join(518495..518637,518688..518775)) 1 1 NC_011129.2 Tap821d03.p1c.cand.14 - score = 9.91; SMART Sm (SM00651) at aa 8-72, E()=1.37e-09; U6 snRNA-associated Sm-lke protein, putative 518775 3863681 TA16725 Theileria annulata U6 snRNA-associated Sm-lke protein, putative XP_953784.1 518495 R 5874 CDS TA16720 3863680 complement(join(518832..519062,519105..519230,519283..519472,519619..519845)) 1 1 NC_011129.2 Tap821d03.p1c.cand.13 - score = 18.17; SMART 1 transmembrane domain, at aa 217-239; 1 probable transmembrane helix predicted for TA16720 by TMHMM2.0 at aa 217-239; uncharacterized protein 519845 3863680 TA16720 Theileria annulata uncharacterized protein XP_953785.1 518832 R 5874 CDS TA16715 3863679 join(520396..520473,520620..520706,520750..520947,521124..521480) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.84 - score = 13.21; SMART pfam:PH (PF00169) at aa 133-233, E()=5.50e-03; uncharacterized protein 521480 3863679 TA16715 Theileria annulata uncharacterized protein XP_953786.1 520396 D 5874 CDS TA16710 3863678 complement(join(521572..522666,522732..523574)) 1 1 NC_011129.2 Tap821d03.p1c.cand.12 - score = 45.77; SMART pfam:Tfb2 (PF03849) at aa 27-514, E()=5.80e-14; TFIIH subunit, Tf2b 523574 3863678 TA16710 Theileria annulata TFIIH subunit, Tf2b XP_953787.1 521572 R 5874 CDS TA16685 3864034 complement(524200..527136) 1 1 NC_011129.2 Tap821d03.p1c.cand.11 - score = 75.80; Signal peptide predicted for TA16685 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.755 between residues 21 and 22; GPI-Anchor Signal predicted for TA16685 by DGPI v2.04, no cleavage site predicted; polymorphic antigen precursor-like protein, putative 527136 3864034 TA16685 Theileria annulata polymorphic antigen precursor-like protein, putative XP_953788.1 524200 R 5874 CDS TA16630 3864023 complement(join(527838..527949,528033..528045,528082..528271,528321..528377,528407..528532,528613..528721,528755..528985,529014..529145,529181..529236)) 1 1 NC_011129.2 Tap821d03.p1c.cand.10 - score = 33.65; SMART WD40 (SM00320) at aa 19-58, E()=7.13e+00; 130-169, E()=3.08e+00; 223-261, E()=2.12e+02; uncharacterized protein 529236 3864023 TA16630 Theileria annulata uncharacterized protein XP_953789.1 527838 R 5874 CDS TA16575 3864265 complement(join(529833..530180,530212..530587,530625..531232)) 1 1 NC_011129.2 Tap821d03.p1c.cand.9 - score = 31.64; SMART 1 transmembrane domain at 417-434; ZnF_NFX (SM00438) at aa 104-115, E()=0.00e+00; TSP1 (SM00209) at aa 200-245, E()=1.82e-07; 1 probable transmembrane helix predicted for TA16575 by TMHMM2.0 at aa 417-434; uncharacterized protein 531232 3864265 TA16575 Theileria annulata uncharacterized protein XP_953790.1 529833 R 5874 CDS TA16570 3864264 join(531525..531642,531768..532296,532379..532473,532569..533002,533057..533165,533198..533316,533390..533515) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.85 - score = 41.12; SMART S_TKc (SM00220) at aa 54-310, E()=2.37e-107; 4 EFh (SM00054) domains, at aa 362-390, E()=8.50e-05; 409-437, E()=1.18e-03; 445-473, E()=3.30e-02; 478-506, E()=5.16e-04; calmodulin-domain protein kinase, putative 533515 3864264 TA16570 Theileria annulata calmodulin-domain protein kinase, putative XP_953791.1 531525 D 5874 CDS TA16465 3864067 complement(533577..536501) 1 1 NC_011129.2 Tap821d03.p1c.cand.8 - score = 60.61; uncharacterized protein 536501 3864067 TA16465 Theileria annulata uncharacterized protein XP_953792.1 533577 R 5874 CDS TA16410 3864056 complement(join(536910..537156,537280..537355,537450..537545,537606..537666)) 1 1 NC_011129.2 Tap821d03.p1c.cand.7 - score = 17.51; uncharacterized protein 537666 3864056 TA16410 Theileria annulata uncharacterized protein XP_953793.1 536910 R 5874 CDS TA16405 3864055 join(538200..538380,538438..538601) 1 1 NC_011129.2 SMART pfam:Ribosomal_S26e (PF01283) at aa 1-114, E()=4.40e-48; 40S ribosomal protein S26e, putative 538601 3864055 TA16405 Theileria annulata 40S ribosomal protein S26e, putative XP_953794.1 538200 D 5874 CDS TA16350 3863400 join(539575..539691,539724..539803,539858..539910,539972..540053,540085..540343,540393..540458,540521..540577,540620..540679,540760..540822,540884..540980,541019..541095) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.86 - score = 30.85; SMART AAA (SM00382) at aa 39-175, E()=1.96e-10; replication factor C subunit (RPC2) 541095 3863400 TA16350 Theileria annulata replication factor C subunit (RPC2) XP_953795.1 539575 D 5874 CDS TA16245 3863596 complement(join(542043..542108,542140..542239,542270..542398,542431..542549,542582..542749,542802..542986,543019..543369,543433..543578,543620..543727,543782..544095)) 1 1 NC_011129.2 SMART 1 transmembrane domain at aa 233-255; 1 probable transmembrane helix predicted for TA16245 by TMHMM2.0 at aa 233-255; uncharacterized protein 544095 3863596 TA16245 Theileria annulata uncharacterized protein XP_953796.1 542043 R 5874 CDS TA16240 3863595 544250..547918 1 1 NC_011129.2 SMART pfam:RNA_pol (PF00940) at aa 810-1222, E()=2.70e-124; DNA-directed RNA polymerase (mitochondrial precursor), putative 547918 3863595 TA16240 Theileria annulata DNA-directed RNA polymerase (mitochondrial precursor), putative XP_953797.1 544250 D 5874 CDS TA16135 3864137 complement(549120..549368) 1 1 NC_011129.2 uncharacterized protein 549368 3864137 TA16135 Theileria annulata uncharacterized protein XP_953798.1 549120 R 5874 CDS TA16130 3864136 join(550206..550624,550660..550844,550907..552374,552406..552562) 1 1 NC_011129.2 Tap821d03.p1c.C.cand.88 - score = 47.10; SMART RING (SM0184) at aa 685-729; uncharacterized protein 552562 3864136 TA16130 Theileria annulata uncharacterized protein XP_953799.1 550206 D 5874 CDS TA16125 3864135 553131..554123 1 1 NC_011129.2 Tap821d03.p1c.C.cand.89 - score = 20.47; SMART 1 transmembrane domain at aa 309-328; 1 probable transmembrane helix predicted for TA16125 by TMHMM2.0 at aa 309-328; Signal peptide predicted for TA16125 by SignalP 2.0 HMM (Signal peptide probability 0.688, signal anchor probability 0.010) with cleavage site probability 0.371 between residues 23 and 24; uncharacterized protein 554123 3864135 TA16125 Theileria annulata uncharacterized protein XP_953800.1 553131 D 5874 CDS TA16120 3864134 complement(join(554255..554392,554424..554482,554512..554763,554824..554938,554975..555115)) 1 1 NC_011129.2 Tap821d03.p1c.cand.5 - score = 32.12; uncharacterized protein 555115 3864134 TA16120 Theileria annulata uncharacterized protein XP_953801.1 554255 R 5874 CDS TA16115 3864133 join(555228..555332,555420..555666,555727..555830) 1 1 NC_011129.2 SMART pfam:Peptidase_S26 (PF00461) at aa 1-136, E()=1.60e-03; mitochondrial membrane protease, subunit 2, putative 555830 3864133 TA16115 Theileria annulata mitochondrial membrane protease, subunit 2, putative XP_953802.1 555228 D 5874 CDS TA16110 3864132 complement(join(555913..556072,556121..556305,556360..556416)) 1 1 NC_011129.2 SMART 1 transmembrane domain at aa 20-39; pfam:DUF174 (PF02617) at aa 59-144, E()=6.00e-05; 1 probable transmembrane helix predicted for TA16110 by TMHMM2.0 at aa 20-39; uncharacterized protein 556416 3864132 TA16110 Theileria annulata uncharacterized protein XP_953803.1 555913 R 5874 CDS TA16105 3864131 556941..557807 1 1 NC_011129.2 Tap821d03.p1c.C.cand.90 - score = 26.38; uncharacterized protein 557807 3864131 TA16105 Theileria annulata uncharacterized protein XP_953804.1 556941 D 5874 CDS TA16100 3864346 join(557893..557980,558057..558159,558226..558696,558811..558909,558963..559037,559066..559129) 1 1 NC_011129.2 SMART ENDO3c (SM00478) at aa 122-295, E()=2.55e-11; GPI-Anchor Signal predicted for TA16100 by DGPI v2.04 with cleavage site probability 0.5814 near 282; 7,8 dihydro-8-oxoguanine DNA glycosylase, putative 559129 3864346 TA16100 Theileria annulata 7,8 dihydro-8-oxoguanine DNA glycosylase, putative XP_953805.1 557893 D 5874 CDS TA16095 3864345 complement(559382..560890) 1 1 NC_011129.2 Tap821d03.p1c.cand.3 - score = 50.64; SMART pfam:Collagen (PF01391) at aa 345-403, E()=6.20e-02; 1 probable transmembrane helix predicted for TA16095 by TMHMM2.0 at aa 7-26; uncharacterized protein 560890 3864345 TA16095 Theileria annulata uncharacterized protein XP_953806.1 559382 R 5874 CDS TA16090 3864344 complement(561370..566721) 1 1 NC_011129.2 glutenin, putative 566721 3864344 TA16090 Theileria annulata glutenin, putative XP_953807.1 561370 R 5874 CDS TA06655 3863477 complement(join(567702..568904,569055..569105)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.137 - score = 49.29; phosphoglycerate kinase (PGK1) 569105 3863477 TA06655 Theileria annulata phosphoglycerate kinase (PGK1) XP_953808.1 567702 R 5874 CDS TA06650 3863476 complement(join(569316..569684,569803..569833,570003..570031)) 1 1 NC_011129.2 60S ribosomal protein L35, putative 570031 3863476 TA06650 Theileria annulata 60S ribosomal protein L35, putative XP_953809.1 569316 R 5874 CDS TA06645 3863475 complement(join(570184..570561,570617..570772)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.136 - score = 15.85; RNA binding protein, putative 570772 3863475 TA06645 Theileria annulata RNA binding protein, putative XP_953810.1 570184 R 5874 CDS TA06640 3863474 complement(571338..572408) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.135 - score = 33.79; uncharacterized protein 572408 3863474 TA06640 Theileria annulata uncharacterized protein XP_953811.1 571338 R 5874 CDS TA06630 3863472 complement(join(572442..572627,572681..573007,573046..573147)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.135 - score = 33.79; 3 probable transmembrane helices predicted for TA06630 by TMHMM2.0 at aa 113-135, 148-170 and 180-202; uncharacterized protein 573147 3863472 TA06630 Theileria annulata uncharacterized protein XP_953812.1 572442 R 5874 CDS TA06625 3863471 join(573588..574911,574969..576458) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.1 - score = 60.72; ATP binding protein (maybe ABC transporter), putative 576458 3863471 TA06625 Theileria annulata ATP binding protein (maybe ABC transporter), putative XP_953813.1 573588 D 5874 CDS TA06620 3863470 576821..578239 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.2 - score = 31.23; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA06620 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA06620 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.001) with cleavage site probability 0.936 between residues 16 and 17; uncharacterized protein 578239 3863470 TA06620 Theileria annulata uncharacterized protein XP_953814.1 576821 D 5874 CDS TA06615 3863469 join(578500..578787,578819..581557) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.3 - score = 79.68; uncharacterized protein 581557 3863469 TA06615 Theileria annulata uncharacterized protein XP_953815.1 578500 D 5874 CDS TA06610 3863429 join(581604..582847,582879..582960,583015..583105,583135..583270,583343..583492,583549..583721,583755..583855,583885..583998) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.4 - score = 117.01; autophagy protein, putative 583998 3863429 TA06610 Theileria annulata autophagy protein, putative XP_953816.1 581604 D 5874 CDS TA06605 3863428 join(584422..584575,584623..584765,584798..584987,585016..585107,585177..585633,585681..585742,585775..585870,585924..586105,586228..586385,586441..586510,586569..586714,586787..587268) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.4 - score = 117.01; threonyl-tRNA synthetase, putative 587268 3863428 TA06605 Theileria annulata threonyl-tRNA synthetase, putative XP_953817.1 584422 D 5874 CDS TA06600 3863427 complement(join(587476..587655,587687..587869,587899..588234,588266..588415,588468..588579,588648..588808)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.134 - score = 34.31; 2 probable transmembrane helices predicted for TA06600 by TMHMM2.0 at aa 92-114 and 124-143; transketolase subunit, putative 588808 3863427 TA06600 Theileria annulata transketolase subunit, putative XP_953818.1 587476 R 5874 CDS TA06595 3863426 complement(join(589190..589339,589371..589399,589451..589481,589512..589572,589607..589695,589730..589823,589881..590075,590108..590229)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.133 - score = 26.45; Signal peptide predicted for TA06595 by SignalP 2.0 HMM (Signal peptide probability 0.937, signal anchor probability 0.000) with cleavage site probability 0.841 between residues 16 and 17; uncharacterized protein 590229 3863426 TA06595 Theileria annulata uncharacterized protein XP_953819.1 589190 R 5874 CDS TA06590 3863425 complement(join(590280..590470,590506..590577,590609..590642,590676..590859,590914..591086,591159..591238,591268..591538,591613..592052,592134..592197)) 1 1 NC_011129.2 uncharacterized protein 592197 3863425 TA06590 Theileria annulata uncharacterized protein XP_953820.1 590280 R 5874 CDS TA06585 3863424 complement(join(592386..595451,595482..595640)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.132 - score = 80.77; uncharacterized protein 595640 3863424 TA06585 Theileria annulata uncharacterized protein XP_953821.1 592386 R 5874 CDS TA06575 3863422 join(596091..596460,596490..596590) 1 1 NC_011129.2 4 probable transmembrane helices predicted for TA06575 by TMHMM2.0 at aa 20-37, 61-83, 90-107 and 117-139; mitochondrial import inner membrane translocase Tim17 subunit, putative 596590 3863422 TA06575 Theileria annulata mitochondrial import inner membrane translocase Tim17 subunit, putative XP_953822.1 596091 D 5874 CDS TA06570 3863421 complement(join(596766..597028,597060..597171,597269..597444,597521..597781,597811..598186)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.131 - score = 30.33; mitochondrial inner membrane subunit, putative 598186 3863421 TA06570 Theileria annulata mitochondrial inner membrane subunit, putative XP_953823.1 596766 R 5874 CDS TA06565 3863420 complement(598565..598942) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.130 - score = 11.30; small ribonucleoprotein D1, putative 598942 3863420 TA06565 Theileria annulata small ribonucleoprotein D1, putative XP_953824.1 598565 R 5874 CDS TA06560 3863419 join(599409..599647,599754..600228) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.6 - score = 14.52; Signal peptide predicted for TA06560 by SignalP 2.0 HMM (Signal peptide probability 0.716, signal anchor probability 0.000) with cleavage site probability 0.404 between residues 18 and 19; uncharacterized protein 600228 3863419 TA06560 Theileria annulata uncharacterized protein XP_953825.1 599409 D 5874 CDS TA06555 3863418 complement(join(600383..600838,600942..601250)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.129 - score = 41.34; co-chaperone (GrpE) 601250 3863418 TA06555 Theileria annulata co-chaperone (GrpE) XP_953826.1 600383 R 5874 CDS TA06550 3863417 complement(join(601435..601579,601647..601714,601745..601818,601868..602005,602035..602213,602372..602476,602667..602677)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.129 - score = 41.34; ribosome biogenesis regulatory protein, putative 602677 3863417 TA06550 Theileria annulata ribosome biogenesis regulatory protein, putative XP_953827.1 601435 R 5874 CDS TA06545 3863416 603131..605125 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.7 - score = 62.20; polyadenylate (poly(A)) binding protein, putative 605125 3863416 TA06545 Theileria annulata polyadenylate (poly(A)) binding protein, putative XP_953828.1 603131 D 5874 CDS TA06540 3863415 join(605787..606411,606471..606937) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.8 - score = 32.47; uncharacterized protein 606937 3863415 TA06540 Theileria annulata uncharacterized protein XP_953829.1 605787 D 5874 CDS TA06535 3863414 join(607542..607562,607614..607718) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.9 - score = 8.39; uncharacterized protein 607718 3863414 TA06535 Theileria annulata uncharacterized protein XP_953830.1 607542 D 5874 CDS TA06530 3863413 join(607974..608115,608157..608302,608333..608464,608506..608625,608656..608775) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.10 - score = 20.45; protein kinase, putative 608775 3863413 TA06530 Theileria annulata protein kinase, putative XP_953831.1 607974 D 5874 CDS TA06525 3863412 join(609175..609490,609559..609659,609689..609835,609865..610020,610047..610146,610222..610509,610570..610691) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.11 - score = 32.51; choline/ethanolamine kinase, putative 610691 3863412 TA06525 Theileria annulata choline/ethanolamine kinase, putative XP_953832.1 609175 D 5874 CDS TA06520 3863411 complement(join(610779..610878,610909..611003,611045..611124,611229..612328,612415..612455,612499..612642,612709..612774)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.128 - score = 61.23; uncharacterized protein 612774 3863411 TA06520 Theileria annulata uncharacterized protein XP_953833.1 610779 R 5874 CDS TA06515 3863410 complement(join(613074..613348,613414..613624)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.127 - score = 30.60; uncharacterized protein 613624 3863410 TA06515 Theileria annulata uncharacterized protein XP_953834.1 613074 R 5874 CDS TA06510 3864541 complement(613796..614731) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.127 - score = 30.60; 1 probable transmembrane helix predicted for TA06510 by TMHMM2.0 at aa 288-310; Signal peptide predicted for TA06510 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.000) with cleavage site probability 0.701 between residues 19 and 20; GPI-Anchor Signal predicted for TA06510 by DGPI v2.04 with cleavage site probability 0.348 near 286; uncharacterized protein 614731 3864541 TA06510 Theileria annulata uncharacterized protein XP_953835.1 613796 R 5874 CDS TA06505 3864540 complement(join(614938..616281,616333..616764)) 1 1 NC_011129.2 uncharacterized protein 616764 3864540 TA06505 Theileria annulata uncharacterized protein XP_953836.1 614938 R 5874 CDS TA06500 3864539 join(617939..618752,618794..619159,619195..619307,619364..619703,619754..619822,619885..620651) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.12 - score = 91.68; transitional endoplasmic reticulum ATPase (CDC48) 620651 3864539 TA06500 Theileria annulata transitional endoplasmic reticulum ATPase (CDC48) XP_953837.1 617939 D 5874 CDS TA06495 3864538 complement(620731..621666) 1 1 NC_011129.2 uncharacterized protein 621666 3864538 TA06495 Theileria annulata uncharacterized protein XP_953838.1 620731 R 5874 CDS TA06490 3864537 complement(join(621724..621810,621877..622031,622088..622220,622280..622472,622558..622709,622740..623211,623242..623729,623783..624255,624294..625179)) 1 1 NC_011129.2 SWI/SNF family trascriptional activator protein, putative 625179 3864537 TA06490 Theileria annulata SWI/SNF family trascriptional activator protein, putative XP_953839.1 621724 R 5874 CDS TA06485 3864536 complement(join(625462..625933,625962..626342,626351..626432,626478..626560,626591..626766,626796..626883,626957..627021,627052..627147,627179..627331)) 1 1 NC_011129.2 uncharacterized protein 627331 3864536 TA06485 Theileria annulata uncharacterized protein XP_953840.1 625462 R 5874 CDS TA06480 3864535 complement(join(627446..627593,627627..627724,627756..628379,628410..628637)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.122 - score = 39.27; uncharacterized protein 628637 3864535 TA06480 Theileria annulata uncharacterized protein XP_953841.1 627446 R 5874 CDS TA06470 3864533 628985..631951 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.13 - score = 106.32; Signal peptide predicted for TA06470 by SignalP 2.0 HMM (Signal peptide probability 0.926, signal anchor probability 0.000) with cleavage site probability 0.761 between residues 20 and 21; chaperone protein (HSP90) 631951 3864533 TA06470 Theileria annulata chaperone protein (HSP90) XP_953842.1 628985 D 5874 CDS TA06465 3864532 632202..635900 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.14 - score = 77.44; uncharacterized protein 635900 3864532 TA06465 Theileria annulata uncharacterized protein XP_953843.1 632202 D 5874 CDS TA06460 3864531 complement(join(636050..636407,636438..637219,637259..637393,637450..637552,637583..638081,638137..638473)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.121 - score = 63.47; uncharacterized protein 638473 3864531 TA06460 Theileria annulata uncharacterized protein XP_953844.1 636050 R 5874 CDS TA06455 3864530 complement(638630..640627) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.120 - score = 57.45; uncharacterized protein 640627 3864530 TA06455 Theileria annulata uncharacterized protein XP_953845.1 638630 R 5874 CDS TA06450 3864529 641220..641903 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.15 - score = 14.18; ATP synthase delta chain, putative 641903 3864529 TA06450 Theileria annulata ATP synthase delta chain, putative XP_953846.1 641220 D 5874 CDS TA06445 3864528 complement(join(641932..642144,642199..642351)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.119 - score = 13.51; vesicular cargo protein, putative 642351 3864528 TA06445 Theileria annulata vesicular cargo protein, putative XP_953847.1 641932 R 5874 CDS TA06440 3864527 join(642610..642675,642733..642803,642867..642978,643052..643156,643190..643279,643351..643473) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.16 - score = 14.80; prefoldin subunit 3, putative 643473 3864527 TA06440 Theileria annulata prefoldin subunit 3, putative XP_953848.1 642610 D 5874 CDS TA06435 3864526 join(644591..644789,644822..644985) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.17 - score = 18.43; actin depolymerizing factor, putative 644985 3864526 TA06435 Theileria annulata actin depolymerizing factor, putative XP_953849.1 644591 D 5874 CDS TA06430 3864525 complement(join(645111..645422,645452..645988,646087..646272,646332..646470,646519..646669,646749..646871,646906..647058,647147..647330)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA06430 by TMHMM2.0 at aa 574-592; uncharacterized protein 647330 3864525 TA06430 Theileria annulata uncharacterized protein XP_953850.1 645111 R 5874 CDS TA06425 3864524 join(648068..648229,648288..648485) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.18 - score = 11.09; 60S ribosomal protein L31, putative 648485 3864524 TA06425 Theileria annulata 60S ribosomal protein L31, putative XP_953851.1 648068 D 5874 CDS TA06415 3864228 complement(join(648630..648891,648930..649040,649072..649118,649159..649312,649369..649539,649568..649602,649636..649825,649855..649940,649971..650113,650154..650193,650235..650363)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.117 - score = 38.99; DEAD-box family (RNA) helicase, putative 650363 3864228 TA06415 Theileria annulata DEAD-box family (RNA) helicase, putative XP_953852.1 648630 R 5874 CDS TA06410 3864227 complement(join(650371..650508,650587..650788,650821..650946,651155..651232,651264..651449,651538..651608,651651..651770,651820..652502,652546..652617,652647..652741,652809..653007,653082..653262,653348..653407,653439..654946,654977..655014,655046..655518)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.116 - score = 129.56; 11 probable transmembrane helices predicted for TA06410 by TMHMM2.0 at aa 143-165, 205-227, 242-259, 655-674, 684-706, 1171-1193, 1208-1227, 1234-1256, 1266-1285, 1292-1311 and 1365-1387; P-type ATPase, putative 655518 3864227 TA06410 Theileria annulata P-type ATPase, putative XP_953853.1 650371 R 5874 CDS TA06405 3864226 complement(join(655724..655796,655828..656816,656847..657068,657098..657283)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.116 - score = 129.56; uncharacterized protein 657283 3864226 TA06405 Theileria annulata uncharacterized protein XP_953854.1 655724 R 5874 CDS TA06400 3864225 join(657485..659407,659439..659987,660034..660831) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.19 - score = 49.38; uncharacterized protein 660831 3864225 TA06400 Theileria annulata uncharacterized protein XP_953855.1 657485 D 5874 CDS TA06395 3864224 join(661311..661716,661803..665287) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.20 - score = 81.34; uncharacterized protein 665287 3864224 TA06395 Theileria annulata uncharacterized protein XP_953856.1 661311 D 5874 CDS TA06390 3864223 complement(665367..666578) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.115 - score = 32.19; uncharacterized protein 666578 3864223 TA06390 Theileria annulata uncharacterized protein XP_953857.1 665367 R 5874 CDS TA06385 3864222 complement(666874..667278) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.115 - score = 32.19; uncharacterized protein 667278 3864222 TA06385 Theileria annulata uncharacterized protein XP_953858.1 666874 R 5874 CDS TA06380 3864221 complement(join(668513..668956,669033..669383)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.114 - score = 24.35; Signal peptide predicted for TA06380 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.002) with cleavage site probability 0.433 between residues 23 and 24; uncharacterized protein 669383 3864221 TA06380 Theileria annulata uncharacterized protein XP_953859.1 668513 R 5874 CDS TA06375 3864220 complement(669780..670232) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.113 - score = 63.43; 1 probable transmembrane helix predicted for TA06375 by TMHMM2.0 at aa 4-26; Signal peptide predicted for TA06375 by SignalP 2.0 HMM (Signal peptide probability 0.972, signal anchor probability 0.019) with cleavage site probability 0.830 between residues 22 and 23; GPI-Anchor Signal predicted for TA06375 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 670232 3864220 TA06375 Theileria annulata uncharacterized protein XP_953860.1 669780 R 5874 CDS TA06370 3864219 complement(670430..673390) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.113 - score = 63.43; 10 probable transmembrane helices predicted for TA06370 by TMHMM2.0 at aa 13-35, 576-598, 605-627, 642-659, 668-690, 710-732, 745-767, 815-837, 858-880 and 890-912; Tpr-related protein family member, putative 673390 3864219 TA06370 Theileria annulata Tpr-related protein family member, putative XP_953861.1 670430 R 5874 CDS TA06360 3864217 complement(673518..675194) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.112 - score = 22.78; 11 probable transmembrane helices predicted for TA06360 by TMHMM2.0 at aa 20-39, 112-134, 144-166, 171-193, 208-230, 344-366, 376-393, 420-442, 462-484, 491-513 and 528-550; Signal anchor predicted for TA06360 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.618) with cleavage site probability 0.002 between residues 41 and 42; Tpr-related protein family member, putative 675194 3864217 TA06360 Theileria annulata Tpr-related protein family member, putative XP_953862.1 673518 R 5874 CDS TA06355 3864216 complement(675572..675949) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.112 - score = 22.78; Signal peptide predicted for TA06355 by SignalP 2.0 HMM (Signal peptide probability 0.979, signal anchor probability 0.000) with cleavage site probability 0.797 between residues 20 and 21; uncharacterized protein 675949 3864216 TA06355 Theileria annulata uncharacterized protein XP_953863.1 675572 R 5874 CDS TA06350 3864215 complement(join(676046..676486,676579..676791,676832..677506,677580..677707,677745..677918,677973..678263,678333..678438)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.111 - score = 76.94; uncharacterized protein 678438 3864215 TA06350 Theileria annulata uncharacterized protein XP_953864.1 676046 R 5874 CDS TA06345 3864214 complement(678652..679560) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.111 - score = 76.94; uncharacterized protein 679560 3864214 TA06345 Theileria annulata uncharacterized protein XP_953865.1 678652 R 5874 CDS TA06340 3864213 complement(join(679820..680198,680228..680295,680328..680429)) 1 1 NC_011129.2 uncharacterized protein 680429 3864213 TA06340 Theileria annulata uncharacterized protein XP_953866.1 679820 R 5874 CDS TA06335 3864212 join(680551..680647,680726..681169,681239..681513) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.22 - score = 20.78; proteasome subunit beta 7, putative 681513 3864212 TA06335 Theileria annulata proteasome subunit beta 7, putative XP_953867.1 680551 D 5874 CDS TA06330 3864211 681731..684061 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.23 - score = 62.22; 10 probable transmembrane helices predicted for TA06330 by TMHMM2.0 at aa 20-42, 375-397, 404-426, 436-458, 471-493, 525-547, 560-578, 625-647, 667-689 and 693-715; Tpr-related protein family member, putative 684061 3864211 TA06330 Theileria annulata Tpr-related protein family member, putative XP_953868.1 681731 D 5874 CDS TA06325 3864210 join(684172..684454,684544..685058) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.23 - score = 62.22; exosome complex exonuclease (Rrp46) 685058 3864210 TA06325 Theileria annulata exosome complex exonuclease (Rrp46) XP_953869.1 684172 D 5874 CDS TA06320 3864209 join(685501..686124,686249..687013,687125..687220,687247..687540) 1 1 NC_011129.2 Signal peptide predicted for TA06320 by SignalP 2.0 HMM (Signal peptide probability 0.891, signal anchor probability 0.002) with cleavage site probability 0.546 between residues 24 and 25; uncharacterized protein 687540 3864209 TA06320 Theileria annulata uncharacterized protein XP_953870.1 685501 D 5874 CDS TA06315 3863468 complement(687879..690413) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.110 - score = 43.55; 1 probable transmembrane helix predicted for TA06315 by TMHMM2.0 at aa 52-74; uncharacterized protein 690413 3863468 TA06315 Theileria annulata uncharacterized protein XP_953871.1 687879 R 5874 CDS TA06305 3863466 join(691084..691466,691502..691625,691656..692843,692873..693043,693099..693776,693807..693971,694002..694130) 1 1 NC_011129.2 uncharacterized protein 694130 3863466 TA06305 Theileria annulata uncharacterized protein XP_953872.1 691084 D 5874 CDS TA06300 3863465 join(694247..694452,694514..694745,694787..695461) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.27 - score = 33.49; uncharacterized protein 695461 3863465 TA06300 Theileria annulata uncharacterized protein XP_953873.1 694247 D 5874 CDS TA06295 3863464 join(695600..697213,697241..697324,697354..697719) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.28 - score = 52.28; uncharacterized protein 697719 3863464 TA06295 Theileria annulata uncharacterized protein XP_953874.1 695600 D 5874 CDS TA06290 3863463 complement(join(697809..698057,698088..698254,698287..698433,698497..698559,698594..698656,698687..698944,698974..699081,699117..699240,699272..699352,699391..699552,699582..699638,699669..699939,699982..700129,700159..700689,700726..701140,701172..701246,701276..701511,701590..701701)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.107 - score = 100.86; DNA polymerase delta catalytic subunit (Pold1) 701701 3863463 TA06290 Theileria annulata DNA polymerase delta catalytic subunit (Pold1) XP_953875.1 697809 R 5874 CDS TA06285 3863462 join(702099..702257,702297..702518,702557..702708,702741..703014) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.29 - score = 22.35; exosome ribonuclease PH (Rrp42) 703014 3863462 TA06285 Theileria annulata exosome ribonuclease PH (Rrp42) XP_953876.1 702099 D 5874 CDS TA06280 3863461 complement(703049..705658) 1 1 NC_011129.2 Signal peptide predicted for TA06280 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.000) with cleavage site probability 0.784 between residues 20 and 21; uncharacterized protein 705658 3863461 TA06280 Theileria annulata uncharacterized protein XP_953877.1 703049 R 5874 CDS TA06275 3863460 complement(join(705896..705998,706030..706115,706171..706254)) 1 1 NC_011129.2 uncharacterized protein 706254 3863460 TA06275 Theileria annulata uncharacterized protein XP_953878.1 705896 R 5874 CDS TA06270 3863459 join(706352..706453,706549..706695,706727..706834,706867..706976,707008..707185,707240..707309,707340..707656,707687..707849,707881..708167) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.30 - score = 44.77; uncharacterized protein 708167 3863459 TA06270 Theileria annulata uncharacterized protein XP_953879.1 706352 D 5874 CDS TA06265 3863458 708388..710247 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.31 - score = 66.00; 10 probable transmembrane helices predicted for TA06265 by TMHMM2.0 at aa 22-44, 144-166, 176-198, 205-227, 242-264, 392-414, 429-451, 501-523, 543-565 and 578-596; Tpr-related protein family member, putative 710247 3863458 TA06265 Theileria annulata Tpr-related protein family member, putative XP_953880.1 708388 D 5874 CDS TA06260 3863457 710444..713464 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.31 - score = 66.00; 11 probable transmembrane helices predicted for TA06260 by TMHMM2.0 at aa 20-42, 54-76, 98-120, 127-149, 164-181, 190-212, 274-296, 309-326, 868-890, 911-933 and 938-960; Tpr-related protein family member, putative 713464 3863457 TA06260 Theileria annulata Tpr-related protein family member, putative XP_953881.1 710444 D 5874 CDS TA06245 3863454 complement(713912..714649) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.103 - score = 11.20; uncharacterized protein 714649 3863454 TA06245 Theileria annulata uncharacterized protein XP_953882.1 713912 R 5874 CDS TA06240 3863453 join(716747..716775,716823..716921,716953..717049) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA06240 by TMHMM2.0 at aa 47-66; Signal anchor predicted for TA06240 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.898) with cleavage site probability 0.000 between residues -1 and 0; protein-transport (SEC61), beta subunit 717049 3863453 TA06240 Theileria annulata protein-transport (SEC61), beta subunit XP_953883.1 716747 D 5874 CDS TA06235 3863452 join(717320..717451,717560..717668,717698..717906,717969..718272,718306..718415,718450..718565,718625..718733,718768..718980,719021..719113) 1 1 NC_011129.2 uncharacterized protein 719113 3863452 TA06235 Theileria annulata uncharacterized protein XP_953884.1 717320 D 5874 CDS TA06230 3863451 complement(join(719507..719692,719724..719954)) 1 1 NC_011129.2 uncharacterized protein 719954 3863451 TA06230 Theileria annulata uncharacterized protein XP_953885.1 719507 R 5874 CDS TA06225 3863450 complement(720296..720859) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.101 - score = 8.92; uncharacterized protein 720859 3863450 TA06225 Theileria annulata uncharacterized protein XP_953886.1 720296 R 5874 CDS TA06220 3863714 complement(721785..722321) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.100 - score = 9.64; 3 probable transmembrane helices predicted for TA06220 by TMHMM2.0 at aa 7-26, 31-53 and 116-138; Signal peptide predicted for TA06220 by SignalP 2.0 HMM (Signal peptide probability 0.655, signal anchor probability 0.233) with cleavage site probability 0.142 between residues 20 and 21; uncharacterized protein 722321 3863714 TA06220 Theileria annulata uncharacterized protein XP_953887.1 721785 R 5874 CDS TA06215 3863713 complement(join(722896..723573,723667..723705)) 1 1 NC_011129.2 uncharacterized protein 723705 3863713 TA06215 Theileria annulata uncharacterized protein XP_953888.1 722896 R 5874 CDS TA06210 3863712 join(724024..724466,724537..724678) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.33 - score = 11.22; cytochrome C1 heme lyase, putative 724678 3863712 TA06210 Theileria annulata cytochrome C1 heme lyase, putative XP_953889.1 724024 D 5874 CDS TA06205 3863711 complement(725444..725923) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.98 - score = 15.65; eukaryotic translation initiation factor (eIF5A) 725923 3863711 TA06205 Theileria annulata eukaryotic translation initiation factor (eIF5A) XP_953890.1 725444 R 5874 CDS TA06200 3863710 complement(join(726320..728187,728218..728342,728499..729412)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.97 - score = 56.90; uncharacterized protein 729412 3863710 TA06200 Theileria annulata uncharacterized protein XP_953891.1 726320 R 5874 CDS TA06195 3863709 complement(join(730218..730374,730433..730794)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.96 - score = 29.40; 1 probable transmembrane helix predicted for TA06195 by TMHMM2.0 at aa 38-60; GPI-Anchor Signal predicted for TA06195 by DGPI v2.04 with cleavage site probability 0.3306 near 140; uncharacterized protein 730794 3863709 TA06195 Theileria annulata uncharacterized protein XP_953892.1 730218 R 5874 CDS TA06185 3863708 complement(join(730903..730992,731024..731125,731169..731624,731653..731748)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.96 - score = 29.40; casein kinase II, beta subunit, putative 731748 3863708 TA06185 Theileria annulata casein kinase II, beta subunit, putative XP_953893.1 730903 R 5874 CDS TA06180 3863707 732154..733701 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.35 - score = 35.23; protein kinase, putative 733701 3863707 TA06180 Theileria annulata protein kinase, putative XP_953894.1 732154 D 5874 CDS TA06175 3863706 complement(733820..734731) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.95 - score = 27.48; RNA-binding (SR) protein, putative 734731 3863706 TA06175 Theileria annulata RNA-binding (SR) protein, putative XP_953895.1 733820 R 5874 CDS TA06170 3863705 join(735356..735423,735474..735593,735630..735691,735746..735819,735859..735972,736004..736195) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.36 - score = 24.30; uncharacterized protein 736195 3863705 TA06170 Theileria annulata uncharacterized protein XP_953896.1 735356 D 5874 CDS TA06165 3863704 join(736613..736661,736738..736960,736989..737116,737179..737252,737283..737351,737419..737508) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.37 - score = 50.06; Rab GTPAse, putative 737508 3863704 TA06165 Theileria annulata Rab GTPAse, putative XP_953897.1 736613 D 5874 CDS TA06160 3863703 join(737768..737887,738089..738163,738417..738452,738497..738644,738688..738791,738830..738961,738991..739146,739177..739988,740019..740220) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.37 - score = 50.06; uncharacterized protein 740220 3863703 TA06160 Theileria annulata uncharacterized protein XP_953898.1 737768 D 5874 CDS TA06155 3863702 join(740511..740612,740672..740947,740979..741086,741121..741233,741309..741400,741493..741614) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.38 - score = 46.79; 20S proteasome beta 5 subunit, putative 741614 3863702 TA06155 Theileria annulata 20S proteasome beta 5 subunit, putative XP_953899.1 740511 D 5874 CDS TA06150 3863701 join(741764..742059,742116..742218,742255..742413,742447..742525,742561..742700,742740..742856) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.38 - score = 46.79; GPI-Anchor Signal predicted for TA06150 by DGPI v2.04 with cleavage site probability 0.172 near 270; uncharacterized protein 742856 3863701 TA06150 Theileria annulata uncharacterized protein XP_953900.1 741764 D 5874 CDS TA06135 3863698 complement(742943..745537) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.94 - score = 77.27; uncharacterized protein 745537 3863698 TA06135 Theileria annulata uncharacterized protein XP_953901.1 742943 R 5874 CDS TA06130 3863697 complement(join(746467..746727,746757..746900,746936..746998,747028..747132,747163..747348,747414..747641)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.93 - score = 74.21; DNA repair protein (RAD23) 747641 3863697 TA06130 Theileria annulata DNA repair protein (RAD23) XP_953902.1 746467 R 5874 CDS TA06125 3863696 complement(join(747872..748080,748111..748229,748263..748358,748397..748517,748549..748582,748627..748688,748719..749023,749055..749251)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.93 - score = 74.21; uncharacterized protein 749251 3863696 TA06125 Theileria annulata uncharacterized protein XP_953903.1 747872 R 5874 CDS TA06120 3863695 complement(join(749379..749512,749580..750167,750198..750323,750362..750395,750452..750504,750537..750702,750739..750786)) 1 1 NC_011129.2 uncharacterized protein 750786 3863695 TA06120 Theileria annulata uncharacterized protein XP_953904.1 749379 R 5874 CDS TA06115 3863810 join(751162..751716,751746..751988) 1 1 NC_011129.2 Signal peptide predicted for TA06115 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.004) with cleavage site probability 0.885 between residues 24 and 25; uncharacterized protein 751988 3863810 TA06115 Theileria annulata uncharacterized protein XP_953905.1 751162 D 5874 CDS TA06110 3863809 complement(752116..752631) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.91 - score = 13.53; uncharacterized protein 752631 3863809 TA06110 Theileria annulata uncharacterized protein XP_953906.1 752116 R 5874 CDS TA06105 3863808 complement(753012..758462) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.90 - score = 153.22; SNF2-family protein (chromodomain-helicase-DNA-binding protein 1) 758462 3863808 TA06105 Theileria annulata SNF2-family protein (chromodomain-helicase-DNA-binding protein 1) XP_953907.1 753012 R 5874 CDS TA06100 3863807 join(760064..760168,760228..760469,760601..761279) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.40 - score = 73.91; splicing factor (SR protein), putative 761279 3863807 TA06100 Theileria annulata splicing factor (SR protein), putative XP_953908.1 760064 D 5874 CDS TA06095 3863806 761465..764143 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.40 - score = 73.91; 11 probable transmembrane helices predicted for TA06095 by TMHMM2.0 at aa 12-34, 519-541, 548-570, 575-597, 610-632, 668-690, 703-725, 749-771, 792-814, 824-846 and 867-889; Tpr-related protein family member, putative 764143 3863806 TA06095 Theileria annulata Tpr-related protein family member, putative XP_953909.1 761465 D 5874 CDS TA06090 3863805 764308..765825 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.41 - score = 22.08; 9 probable transmembrane helices predicted for TA06090 by TMHMM2.0 at aa 15-32, 101-123, 133-155, 195-217, 237-259, 272-290, 341-363, 384-406 and 416-438; Tpr-related protein family member, putative 765825 3863805 TA06090 Theileria annulata Tpr-related protein family member, putative XP_953910.1 764308 D 5874 CDS TA06080 3863803 complement(join(765919..766013,766042..766111,766144..766231,766281..766315,766372..766398,766432..766612,766662..766778,766811..766890,766943..767018,767073..767347)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.89 - score = 34.64; uncharacterized protein 767347 3863803 TA06080 Theileria annulata uncharacterized protein XP_953911.1 765919 R 5874 CDS TA06075 3863802 join(767625..767788,767882..768033,768094..768219,768256..768557,768637..768936) 1 1 NC_011129.2 Signal peptide predicted for TA06075 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.607 between residues 20 and 21; protein disulfide isomerase (thioredoxin), putative 768936 3863802 TA06075 Theileria annulata protein disulfide isomerase (thioredoxin), putative XP_953912.1 767625 D 5874 CDS TA06070 3863801 769457..771247 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.43 - score = 25.57; 12 probable transmembrane helices predicted for TA06070 by TMHMM2.0 at aa 20-42, 71-93, 113-135, 147-169, 174-196, 209-231, 339-361, 374-393, 443-465, 484-506, 516-538 and 573-595; GPI-Anchor Signal predicted for TA06070 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative 771247 3863801 TA06070 Theileria annulata Tpr-related protein family member, putative XP_953913.1 769457 D 5874 CDS TA06065 3863800 complement(771274..772836) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.88 - score = 37.95; Signal peptide predicted for TA06065 by SignalP 2.0 HMM (Signal peptide probability 0.745, signal anchor probability 0.012) with cleavage site probability 0.582 between residues 24 and 25; GMP synthase, putative 772836 3863800 TA06065 Theileria annulata GMP synthase, putative XP_953914.1 771274 R 5874 CDS TA06060 3863799 complement(join(773270..773958,774082..774376)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.87 - score = 26.10; uncharacterized protein 774376 3863799 TA06060 Theileria annulata uncharacterized protein XP_953915.1 773270 R 5874 CDS TA06055 3863798 complement(join(774862..774962,775058..775327,775370..775592)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.86 - score = 22.39; ubiquinol-cytochrome C reductase complex, 14 kDa subunit 775592 3863798 TA06055 Theileria annulata ubiquinol-cytochrome C reductase complex, 14 kDa subunit XP_953916.1 774862 R 5874 CDS TA06050 3863797 complement(join(775866..775915,776034..776085,776116..776190,776261..776403,776502..776748)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.86 - score = 22.39; 1 probable transmembrane helix predicted for TA06050 by TMHMM2.0 at aa 26-48; Signal anchor predicted for TA06050 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.856) with cleavage site probability 0.001 between residues 40 and 41; uncharacterized protein 776748 3863797 TA06050 Theileria annulata uncharacterized protein XP_953917.1 775866 R 5874 CDS TA06045 3863796 join(776896..777355,777397..777689) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.44 - score = 20.15; transcription factor, putative; uncharacterized protein 777689 3863796 TA06045 Theileria annulata uncharacterized protein XP_953918.1 776896 D 5874 CDS TA06040 3863795 join(778263..778340,778374..778429,778496..778621,778654..778696,778760..778870,778920..779099) 1 1 NC_011129.2 uncharacterized protein 779099 3863795 TA06040 Theileria annulata uncharacterized protein XP_953919.1 778263 D 5874 CDS TA06035 3863794 779425..780441 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.46 - score = 23.89; RNA binding protein, putative 780441 3863794 TA06035 Theileria annulata RNA binding protein, putative XP_953920.1 779425 D 5874 CDS TA06030 3863793 join(780767..780918,780949..780962,781059..781436,781513..781784) 1 1 NC_011129.2 2 probable transmembrane helices predicted for TA06030 by TMHMM2.0 at aa 7-29 and 33-52; Signal peptide predicted for TA06030 by SignalP 2.0 HMM (Signal peptide probability 0.667, signal anchor probability 0.278) with cleavage site probability 0.334 between residues 24 and 25; uncharacterized protein 781784 3863793 TA06030 Theileria annulata uncharacterized protein XP_953921.1 780767 D 5874 CDS TA06025 3863792 782217..784463 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.48 - score = 35.22; 9 probable transmembrane helices predicted for TA06025 by TMHMM2.0 at aa 377-399, 411-433, 437-459, 480-502, 536-558, 565-582, 618-640, 660-682 and 692-714; Tpr-related protein family member, putative 784463 3863792 TA06025 Theileria annulata Tpr-related protein family member, putative XP_953922.1 782217 D 5874 CDS TA06020 3864307 complement(join(784939..785062,785095..785410,785441..785601,785658..785872)) 1 1 NC_011129.2 2 probable transmembrane helices predicted for TA06020 by TMHMM2.0 at aa 109-131 and 169-191; uncharacterized protein 785872 3864307 TA06020 Theileria annulata uncharacterized protein XP_953923.1 784939 R 5874 CDS TA06015 3864306 join(786250..786397,786454..786674,786746..786832,786895..787010,787250..787337,787385..787471,787562..787819) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.49 - score = 30.68; eukaryotic translation initiation factor 2 alpha subunit, putative 787819 3864306 TA06015 Theileria annulata eukaryotic translation initiation factor 2 alpha subunit, putative XP_953924.1 786250 D 5874 CDS TA06010 3864305 join(788101..788178,788271..788423,788493..788646,788701..789100,789153..789253,789316..789443,789512..789656,789731..789836,789900..790122) 1 1 NC_011129.2 signal recognition particle 54kDa protein 2, putative 790122 3864305 TA06010 Theileria annulata signal recognition particle 54kDa protein 2, putative XP_953925.1 788101 D 5874 CDS TA06005 3864304 790347..792200 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.52 - score = 26.67; 10 probable transmembrane helices predicted for TA06005 by TMHMM2.0 at aa 236-258, 270-292, 296-318, 339-361, 388-410, 423-445, 465-487, 507-529, 539-561 and 592-614; Tpr-related protein family member, putative 792200 3864304 TA06005 Theileria annulata Tpr-related protein family member, putative XP_953926.1 790347 D 5874 CDS TA06000 3864303 complement(792229..793248) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.84 - score = 25.81; uncharacterized protein 793248 3864303 TA06000 Theileria annulata uncharacterized protein XP_953927.1 792229 R 5874 CDS TA05995 3864302 join(794019..794199,794268..794602,794666..794736,794788..794867,794898..794972,795026..795141,795182..795262) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.53 - score = 25.19; DNA repair protein (RAD2 nuclease) 795262 3864302 TA05995 Theileria annulata DNA repair protein (RAD2 nuclease) XP_953928.1 794019 D 5874 CDS TA05990 3864301 complement(join(795299..795916,795978..796088)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.83 - score = 15.82; uncharacterized protein 796088 3864301 TA05990 Theileria annulata uncharacterized protein XP_953929.1 795299 R 5874 CDS TA05985 3864300 complement(796174..798279) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.82 - score = 36.75; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05985 by SignalP 2.0 HMM (Signal peptide probability 0.918, signal anchor probability 0.000) with cleavage site probability 0.588 between residues 21 and 22; uncharacterized protein 798279 3864300 TA05985 Theileria annulata uncharacterized protein XP_953930.1 796174 R 5874 CDS TA05975 3864298 join(798410..799120,799150..799236,799271..799408,799440..799534,799593..799683,799757..799957,799987..800231,800269..800407,800537..800752,800783..800842,801045..802334) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.54 - score = 67.16; uncharacterized protein 802334 3864298 TA05975 Theileria annulata uncharacterized protein XP_953931.1 798410 D 5874 CDS TA05970 3864297 complement(802428..805352) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.81 - score = 58.72; 10 probable transmembrane helices predicted for TA05970 by TMHMM2.0 at aa 20-42, 587-609, 616-638, 643-665, 678-700, 720-742, 755-774, 820-842, 863-885 and 895-917; Tpr-related protein family member, putative 805352 3864297 TA05970 Theileria annulata Tpr-related protein family member, putative XP_953932.1 802428 R 5874 CDS TA05965 3864296 complement(805475..807289) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.80 - score = 27.22; 11 probable transmembrane helices predicted for TA05965 by TMHMM2.0 at aa 19-41, 222-244, 251-273, 283-305, 317-339, 373-395, 408-430, 462-484, 504-526, 536-558 and 579-601; Signal anchor predicted for TA05965 by SignalP 2.0 HMM (Signal peptide probability 0.161, signal anchor probability 0.704) with cleavage site probability 0.058 between residues 31 and 32; Tpr-related protein family member, putative 807289 3864296 TA05965 Theileria annulata Tpr-related protein family member, putative XP_953933.1 805475 R 5874 CDS TA05960 3864295 complement(807545..809257) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.79 - score = 24.56; 10 probable transmembrane helices predicted for TA05960 by TMHMM2.0 at aa 20-42, 115-137, 152-171, 178-200, 220-242, 349-371, 381-398, 464-486, 506-528 and 535-557; Tpr-related protein family member, putative 809257 3864295 TA05960 Theileria annulata Tpr-related protein family member, putative XP_953934.1 807545 R 5874 CDS TA05955 3864294 complement(join(809491..809659,809732..809838,809869..809934,809966..810185,810226..810288,810346..810389)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.78 - score = 24.24; 1 probable transmembrane helix predicted for TA05955 by TMHMM2.0 at aa 199-221; uncharacterized protein 810389 3864294 TA05955 Theileria annulata uncharacterized protein XP_953935.1 809491 R 5874 CDS TA05950 3864293 complement(join(810519..810960,811029..811224,811319..811772,811849..811925,812008..812121,812187..812220)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.77 - score = 45.27; 26S proteasome subunit 4, putative 812220 3864293 TA05950 Theileria annulata 26S proteasome subunit 4, putative XP_953936.1 810519 R 5874 CDS TA05945 3864292 complement(join(812451..812690,812720..812958,813071..813341)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.76 - score = 29.99; ubiquitin-conjugating enzyme E2 (RUB1) 813341 3864292 TA05945 Theileria annulata ubiquitin-conjugating enzyme E2 (RUB1) XP_953937.1 812451 R 5874 CDS TA05940 3864291 complement(join(813495..813605,813640..813685,813731..814055,814103..814145)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.76 - score = 29.99; uncharacterized protein 814145 3864291 TA05940 Theileria annulata uncharacterized protein XP_953938.1 813495 R 5874 CDS TA05935 3864290 join(814746..814799,814828..814955,815005..815050,815080..815161,815225..815319,815370..815525,815559..815704,815750..815864,815917..816100,816144..816226,816256..816382,816409..816563,816619..816767,816900..817055,817114..817297) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.55 - score = 43.26; 5'-3' exoribonuclease (XRN2, DHM1) 817297 3864290 TA05935 Theileria annulata 5'-3' exoribonuclease (XRN2, DHM1) XP_953939.1 814746 D 5874 CDS TA05930 3864289 join(817494..817593,817624..817739,818022..818318,818393..818526,818556..818709,818757..818864,818897..818943,818974..819790,819832..819988,820020..820076,820142..820899,820978..821078,821109..821193,821226..821309,821339..821388,821442..821541) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.56 - score = 85.88; 2 probable transmembrane helices predicted for TA05930 by TMHMM2.0 at aa 599-621 and 634-656; uncharacterized protein 821541 3864289 TA05930 Theileria annulata uncharacterized protein XP_953940.1 817494 D 5874 CDS TA05920 3864287 join(821598..821733,821771..822153) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.57 - score = 53.10; uncharacterized protein 822153 3864287 TA05920 Theileria annulata uncharacterized protein XP_953941.1 821598 D 5874 CDS TA05915 3864286 join(822241..824002,824080..824279,824331..824516) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.57 - score = 53.10; oxidoreductase, putative 824516 3864286 TA05915 Theileria annulata oxidoreductase, putative XP_953942.1 822241 D 5874 CDS TA05910 3864285 complement(824654..827860) 1 1 NC_011129.2 uncharacterized protein 827860 3864285 TA05910 Theileria annulata uncharacterized protein XP_953943.1 824654 R 5874 CDS TA05905 3864284 complement(join(827989..828400,828466..828607,828675..828768,828840..829395,829480..831161,831193..831342)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.75 - score = 145.41; uncharacterized protein 831342 3864284 TA05905 Theileria annulata uncharacterized protein XP_953944.1 827989 R 5874 CDS TA05900 3864283 join(831798..833927,833960..841681) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.58 - score = 152.53; dynein heavy chain, putative 841681 3864283 TA05900 Theileria annulata dynein heavy chain, putative XP_953945.1 831798 D 5874 CDS TA05895 3864282 complement(join(841791..841939,841971..842061)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.74 - score = 9.81; uncharacterized protein 842061 3864282 TA05895 Theileria annulata uncharacterized protein XP_953946.1 841791 R 5874 CDS TA05890 3864281 join(842277..842351,842384..843398,843711..843760,843807..843981,844048..844129,844159..844243,844275..844349,844378..844443,844472..844924,844953..845011,845041..845185) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.59 - score = 71.63; adapter-related protein, putative 845185 3864281 TA05890 Theileria annulata adapter-related protein, putative XP_953947.1 842277 D 5874 CDS TA05885 3864280 complement(845202..846281) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.73 - score = 23.86; ribosomal RNA methyltransferase (FtsJ) 846281 3864280 TA05885 Theileria annulata ribosomal RNA methyltransferase (FtsJ) XP_953948.1 845202 R 5874 CDS TA05880 3864279 complement(join(846472..846543,846558..846632,846664..846758,846789..847076,847111..847211,847244..847302,847334..847570)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.71 - score = 25.48; uncharacterized protein 847570 3864279 TA05880 Theileria annulata uncharacterized protein XP_953949.1 846472 R 5874 CDS TA05875 3864278 complement(join(847676..847796,847827..847960,847992..848720,848752..849094,849165..849376)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.70 - score = 42.45; nonsense-mediated mRNA decay protein (NMD3) 849376 3864278 TA05875 Theileria annulata nonsense-mediated mRNA decay protein (NMD3) XP_953950.1 847676 R 5874 CDS TA05865 3864276 join(850109..850162,850195..850268,850427..850598,850629..850734,850764..850915,850947..851135,851165..851218,851248..851358,851389..851481,851514..851576,851608..851661) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.60 - score = 49.20; RNA binding protein, putative 851661 3864276 TA05865 Theileria annulata RNA binding protein, putative XP_953951.1 850109 D 5874 CDS TA05860 3864275 complement(join(851783..852178,852208..852261,852323..852482,852517..852944)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.68 - score = 143.15; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05860 by SignalP 2.0 HMM (Signal peptide probability 0.923, signal anchor probability 0.069) with cleavage site probability 0.589 between residues 20 and 21; uncharacterized protein 852944 3864275 TA05860 Theileria annulata uncharacterized protein XP_953952.1 851783 R 5874 CDS TA05855 3864274 complement(join(853239..853487,853519..853630,853663..854032,854063..854230,854260..854365,854395..854491,854524..854618,854650..855027,855080..855999,856034..856717,856824..856899)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.68 - score = 143.15; 1 probable transmembrane helix predicted for TA05855 by TMHMM2.0 at aa 210-232; uncharacterized protein 856899 3864274 TA05855 Theileria annulata uncharacterized protein XP_953953.1 853239 R 5874 CDS TA05850 3864273 complement(857097..858257) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.68 - score = 143.15; uncharacterized protein 858257 3864273 TA05850 Theileria annulata uncharacterized protein XP_953954.1 857097 R 5874 CDS TA05845 3864272 join(858963..859412,859443..859884,859915..860027,860056..860306,860336..860660,860694..860794,860824..861127) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.61 - score = 59.45; DEAD-box family helicase, putative 861127 3864272 TA05845 Theileria annulata DEAD-box family helicase, putative XP_953955.1 858963 D 5874 CDS TA05840 3864271 complement(861192..862082) 1 1 NC_011129.2 uncharacterized protein 862082 3864271 TA05840 Theileria annulata uncharacterized protein XP_953956.1 861192 R 5874 CDS TA05835 3864270 complement(join(862184..864617,864646..864991,865024..865429)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.66 - score = 100.80; phosphatidylinositol 4-kinase, putative 865429 3864270 TA05835 Theileria annulata phosphatidylinositol 4-kinase, putative XP_953957.1 862184 R 5874 CDS TA05830 3864269 join(865881..866013,866045..866126,866164..866199,866234..866287,866317..866383,866415..866495) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.62 - score = 16.00; uncharacterized protein 866495 3864269 TA05830 Theileria annulata uncharacterized protein XP_953958.1 865881 D 5874 CDS TA05825 3863567 complement(join(866563..866695,866727..866768,866798..866917,866951..867099,867133..867345,867375..867437,867483..867593,867623..867682,867711..867782,867812..868356,868389..868653)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.65 - score = 53.35; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05825 by SignalP 2.0 HMM (Signal peptide probability 0.802, signal anchor probability 0.002) with cleavage site probability 0.480 between residues 26 and 27; asparaginyl-tRNA synthetase (chloroplast/mitochondrial precursor), putative 868653 3863567 TA05825 Theileria annulata asparaginyl-tRNA synthetase (chloroplast/mitochondrial precursor), putative XP_953959.1 866563 R 5874 CDS TA05820 3863566 complement(868951..870183) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.64 - score = 15.14; 9 probable transmembrane helices predicted for TA05820 by TMHMM2.0 at aa 13-35, 45-67, 100-122, 132-151, 206-223, 228-247, 289-311, 361-383 and 390-409; Signal anchor predicted for TA05820 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.976) with cleavage site probability 0.008 between residues 23 and 24; uncharacterized protein 870183 3863566 TA05820 Theileria annulata uncharacterized protein XP_953960.1 868951 R 5874 CDS TA05810 3863564 complement(join(870415..870556,870587..870652,870698..870819,870857..871171)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.63 - score = 18.47; uncharacterized protein 871171 3863564 TA05810 Theileria annulata uncharacterized protein XP_953961.1 870415 R 5874 CDS TA05805 3863563 join(871951..871999,872036..872074,872106..872195,872230..872346,872378..872561,872591..872837,872871..873215,873266..873358,873400..873479,873529..873629,873660..873872,873904..874187) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.64 - score = 72.48; cyclophilin peptidyl-prolyl cis-trans isomerase protein, putative 874187 3863563 TA05805 Theileria annulata cyclophilin peptidyl-prolyl cis-trans isomerase protein, putative XP_953962.1 871951 D 5874 CDS TA05800 3863562 join(875077..875971,876049..876584) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.65 - score = 43.61; uncharacterized protein 876584 3863562 TA05800 Theileria annulata uncharacterized protein XP_953963.1 875077 D 5874 CDS TA05795 3863561 join(876925..876997,877053..877123,877161..877229,877260..878105) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.66 - score = 42.92; uncharacterized protein 878105 3863561 TA05795 Theileria annulata uncharacterized protein XP_953964.1 876925 D 5874 CDS TA05790 3863560 join(879701..879849,879884..880385,880416..880541,880575..880802) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.67 - score = 38.92; ADP-ribosylation factor GTPase-activating protein, putative 880802 3863560 TA05790 Theileria annulata ADP-ribosylation factor GTPase-activating protein, putative XP_953965.1 879701 D 5874 CDS TA05785 3863559 join(881234..881533,881564..881699,881729..883707,883751..886637,886692..886779,886809..887155,887221..887483) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.68 - score = 154.07; DNA-directed RNA polymerase I, putative 887483 3863559 TA05785 Theileria annulata DNA-directed RNA polymerase I, putative XP_953966.1 881234 D 5874 CDS TA05780 3863558 complement(887562..889784) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.62 - score = 41.69; 9 probable transmembrane helices predicted for TA05780 by TMHMM2.0 at aa 375-397, 404-426, 441-458, 467-489, 509-531, 544-566, 595-617, 638-660 and 670-692; Tpr-related protein family member, putative 889784 3863558 TA05780 Theileria annulata Tpr-related protein family member, putative XP_953967.1 887562 R 5874 CDS TA05775 3863557 complement(889907..891889) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.61 - score = 24.15; 11 probable transmembrane helices predicted for TA05775 by TMHMM2.0 at aa 20-42, 153-175, 185-207, 214-236, 251-273, 411-433, 448-467, 523-545, 565-587, 594-613 and 633-652; Signal anchor predicted for TA05775 by SignalP 2.0 HMM (Signal peptide probability 0.040, signal anchor probability 0.680) with cleavage site probability 0.015 between residues 32 and 33; Tpr-related protein family member, putative 891889 3863557 TA05775 Theileria annulata Tpr-related protein family member, putative XP_953968.1 889907 R 5874 CDS TA05770 3863556 complement(892105..894243) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.60 - score = 31.38; 9 probable transmembrane helices predicted for TA05770 by TMHMM2.0 at aa 10-28, 83-105, 115-137, 144-166, 181-203, 278-300, 595-617, 638-660 and 665-687; Tpr-related protein family member, putative 894243 3863556 TA05770 Theileria annulata Tpr-related protein family member, putative XP_953969.1 892105 R 5874 CDS TA05765 3863555 complement(894500..897832) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.59 - score = 71.88; ubiquitination-mediated degradation component, putative 897832 3863555 TA05765 Theileria annulata ubiquitination-mediated degradation component, putative XP_953970.1 894500 R 5874 CDS TA05755 3863553 complement(898094..901342) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.58 - score = 27.15; 11 probable transmembrane helices predicted for TA05755 by TMHMM2.0 at aa 9-28, 43-65, 72-91, 96-118, 125-147, 162-181, 249-271, 281-300, 307-329, 339-361 and 768-790; uncharacterized protein 901342 3863553 TA05755 Theileria annulata uncharacterized protein XP_953971.1 898094 R 5874 CDS TA05750 3863552 join(901808..901948,901984..902115) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.69 - score = 10.97; Signal peptide predicted for TA05750 by SignalP 2.0 HMM (Signal peptide probability 0.605, signal anchor probability 0.000) with cleavage site probability 0.591 between residues 21 and 22; (U6) snRNA-associated Sm-like protein, putative 902115 3863552 TA05750 Theileria annulata (U6) snRNA-associated Sm-like protein, putative XP_953972.1 901808 D 5874 CDS TA05745 3863551 complement(join(902123..902215,902247..902452,902483..902726,902761..902853,902883..903017,903052..903324,903355..903466,903499..903563,903597..903698,903734..903787,903817..903903,903935..904023,904055..904151,904182..904444,904476..904579,904611..904818,904856..904974,905007..905045,905153..905190)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.57 - score = 94.86; recombinational repair (RAD54) protein 905190 3863551 TA05745 Theileria annulata recombinational repair (RAD54) protein XP_953973.1 902123 R 5874 CDS TA05740 3863550 complement(join(905445..905587,905625..905753,905787..905954,905989..906068,906110..906159)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.56 - score = 20.82; ubiquitin-conjugating enzyme, putative 906159 3863550 TA05740 Theileria annulata ubiquitin-conjugating enzyme, putative XP_953974.1 905445 R 5874 CDS TA05735 3863549 complement(join(906948..907028,907066..907098,907131..907234,907264..907363,907397..907422,907455..907478,907510..907646,907678..907741,907772..907949,907980..908534)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.55 - score = 36.33; Signal peptide predicted for TA05735 by SignalP 2.0 HMM (Signal peptide probability 0.799, signal anchor probability 0.000) with cleavage site probability 0.444 between residues 20 and 21; aspartyl protease, putative 908534 3863549 TA05735 Theileria annulata aspartyl protease, putative XP_953975.1 906948 R 5874 CDS TA05730 3863548 join(908892..909223,909256..909367,909396..909544,909574..909672,909702..909761,909791..909944) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.70 - score = 74.90; uncharacterized protein 909944 3863548 TA05730 Theileria annulata uncharacterized protein XP_953976.1 908892 D 5874 CDS TA05725 3863925 join(910210..910824,910854..910934,911026..912201) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.70 - score = 74.90; uncharacterized protein 912201 3863925 TA05725 Theileria annulata uncharacterized protein XP_953977.1 910210 D 5874 CDS TA05720 3863924 complement(912272..912547) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.54 - score = 17.27; mitochondrial import inner membrane translocase subunit (TIM9) 912547 3863924 TA05720 Theileria annulata mitochondrial import inner membrane translocase subunit (TIM9) XP_953978.1 912272 R 5874 CDS TA05715 3863923 complement(join(912839..913052,913175..913244,913279..913392,913427..913616,913646..913833,913865..913910)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.54 - score = 17.27; 6 probable transmembrane helices predicted for TA05715 by TMHMM2.0 at aa 21-43, 63-85, 128-150, 160-182, 189-206 and 250-272; uncharacterized protein 913910 3863923 TA05715 Theileria annulata uncharacterized protein XP_953979.1 912839 R 5874 CDS TA05710 3863922 complement(join(915660..915919,915952..916108,916173..916600,916635..916815,916892..917122,917154..917369,917401..917535,917569..917898,917982..918248,918277..918653,918684..918742,918773..919066,919097..919150,919187..919266)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.53 - score = 119.95; pre-mRNA splicing factor (U5 snRNP-associated), putative 919266 3863922 TA05710 Theileria annulata pre-mRNA splicing factor (U5 snRNP-associated), putative XP_953980.1 915660 R 5874 CDS TA05700 3863920 complement(join(919808..920458,920527..920584,920673..921763)) 1 1 NC_011129.2 3 probable transmembrane helices predicted for TA05700 by TMHMM2.0 at aa 368-390, 545-567 and 572-591; uncharacterized protein 921763 3863920 TA05700 Theileria annulata uncharacterized protein XP_953981.1 919808 R 5874 CDS TA05695 3863919 join(922006..922125,922237..923032,923063..923151,923181..923765,923825..924112,924161..924707,924738..924805) 1 1 NC_011129.2 vacuolar sorting protein 35 924805 3863919 TA05695 Theileria annulata vacuolar sorting protein 35 XP_953982.1 922006 D 5874 CDS TA05690 3863918 complement(join(925812..925939,925968..926052,926082..926210,926288..926806,926869..926934,926968..927064,927115..927326,927357..927459,927534..927675,927716..927814,927849..928002)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.51 - score = 37.99; 4 probable transmembrane helices predicted for TA05690 by TMHMM2.0 at aa 26-48, 61-83, 98-116 and 168-190; uncharacterized protein 928002 3863918 TA05690 Theileria annulata uncharacterized protein XP_953983.1 925812 R 5874 CDS TA05685 3863917 complement(join(928170..928385,928456..929051,929083..929500)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.50 - score = 27.17; uncharacterized protein 929500 3863917 TA05685 Theileria annulata uncharacterized protein XP_953984.1 928170 R 5874 CDS TA05680 3863916 929706..931136 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.74 - score = 35.57; uncharacterized protein 931136 3863916 TA05680 Theileria annulata uncharacterized protein XP_953985.1 929706 D 5874 CDS TA05675 3863915 complement(931211..932362) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.49 - score = 24.27; actin, putative 932362 3863915 TA05675 Theileria annulata actin, putative XP_953986.1 931211 R 5874 CDS TA05670 3863914 join(932729..932913,932958..933078,933113..933340) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.75 - score = 13.36; ribosomal protein L11, putative 933340 3863914 TA05670 Theileria annulata ribosomal protein L11, putative XP_953987.1 932729 D 5874 CDS TA05665 3863913 join(933610..933719,933752..934014,934052..934157,934336..934460,934535..934975,935005..935231) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.76 - score = 31.76; uncharacterized protein 935231 3863913 TA05665 Theileria annulata uncharacterized protein XP_953988.1 933610 D 5874 CDS TA05660 3863912 complement(join(935302..936590,936656..936749)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.48 - score = 23.90; 4 probable transmembrane helices predicted for TA05660 by TMHMM2.0 at aa 310-332, 337-359, 366-388 and 398-420; uncharacterized protein 936749 3863912 TA05660 Theileria annulata uncharacterized protein XP_953989.1 935302 R 5874 CDS TA05655 3863911 complement(join(937008..937098,937129..937229,937260..937427,937462..937536,937569..937654,937683..937724,937756..937925,937969..938033)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.47 - score = 34.95; uncharacterized protein 938033 3863911 TA05655 Theileria annulata uncharacterized protein XP_953990.1 937008 R 5874 CDS TA07020 3864506 join(938139..938201,938232..938346,938377..938453,938483..938574,938605..938748,938810..938879,938949..939026,939059..939166) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.77 - score = 26.51; phosphomannomutase, putative 939166 3864506 TA07020 Theileria annulata phosphomannomutase, putative XP_953991.1 938139 D 5874 CDS TA07015 3864505 complement(join(939212..940027,940103..940954)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.46 - score = 44.19; uncharacterized protein 940954 3864505 TA07015 Theileria annulata uncharacterized protein XP_953992.1 939212 R 5874 CDS TA07010 3864504 complement(join(941268..941362,941458..941519,941589..941779)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.45 - score = 10.20; uncharacterized protein 941779 3864504 TA07010 Theileria annulata uncharacterized protein XP_953993.1 941268 R 5874 CDS TA07005 3864189 join(942135..942281,942350..942498,942588..942742,942793..942914,943006..943144,943214..943330,943361..943611,943698..943844) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.78 - score = 27.30; uncharacterized protein 943844 3864189 TA07005 Theileria annulata uncharacterized protein XP_953994.1 942135 D 5874 CDS TA07000 3864188 join(944621..944946,944998..945749,945848..945924,945956..946036) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.79 - score = 36.66; cyclin-dependent kinase CRK3 (CDK7) 946036 3864188 TA07000 Theileria annulata cyclin-dependent kinase CRK3 (CDK7) XP_953995.1 944621 D 5874 CDS TA06995 3864187 complement(join(946098..947728,947980..948406,948447..948590,948645..948864,948954..949176,949247..949337,949371..949478,949531..950127)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.44 - score = 73.06; transcriptional adaptor (ADA2) 950127 3864187 TA06995 Theileria annulata transcriptional adaptor (ADA2) XP_953996.1 946098 R 5874 CDS TA06990 3864186 join(950769..951941,951970..951978,952013..952630,952661..952948,953005..953112,953187..953229,953264..953331) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.80 - score = 119.92; uncharacterized protein 953331 3864186 TA06990 Theileria annulata uncharacterized protein XP_953997.1 950769 D 5874 CDS TA06985 3864185 join(953364..953523,953554..954599,954667..954805,954845..955073,955134..955707,955769..956175,956205..956265) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.80 - score = 119.92; uncharacterized protein 956265 3864185 TA06985 Theileria annulata uncharacterized protein XP_953998.1 953364 D 5874 CDS TA06980 3864184 complement(957073..958587) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.43 - score = 18.61; 10 probable transmembrane helices predicted for TA06980 by TMHMM2.0 at aa 26-48, 113-135, 147-169, 184-201, 213-235, 255-277, 289-311, 355-377, 398-420 and 424-446; Tpr-related protein family member, putative 958587 3864184 TA06980 Theileria annulata Tpr-related protein family member, putative XP_953999.1 957073 R 5874 CDS TA06975 3864183 complement(958790..961042) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.42 - score = 54.93; 10 probable transmembrane helices predicted for TA06975 by TMHMM2.0 at aa 21-43, 376-398, 405-427, 437-459, 471-493, 534-556, 563-585, 625-647, 667-689 and 693-715; Tpr-related protein family member, putative 961042 3864183 TA06975 Theileria annulata Tpr-related protein family member, putative XP_954000.1 958790 R 5874 CDS TA06970 3864182 complement(961240..962685) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.42 - score = 54.93; 11 probable transmembrane helices predicted for TA06970 by TMHMM2.0 at aa 20-42, 68-90, 110-132, 144-166, 170-192, 213-235, 268-290, 297-316, 354-376, 397-419 and 429-451; Tpr-related protein family member, putative 962685 3864182 TA06970 Theileria annulata Tpr-related protein family member, putative XP_954001.1 961240 R 5874 CDS TA06965 3864181 complement(join(962984..965277,965361..965991)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.41 - score = 47.16; 1-phosphatidylinositol-4,5-bisphosphatephosphod ie sterase 965991 3864181 TA06965 Theileria annulata 1-phosphatidylinositol-4,5-bisphosphatephosphod ie sterase XP_954002.1 962984 R 5874 CDS TA06960 3864180 join(966629..966746,966964..967028,967581..968942,969153..969398,969446..969660,970077..970570,970659..970967,971037..971095,971425..971722,971796..971924,972044..972380,972414..972735,972836..972957,973313..973574) 1 1 NC_011129.2 myosin, putative 973574 3864180 TA06960 Theileria annulata myosin, putative XP_954003.1 966629 D 5874 CDS TA06955 3864179 complement(973702..975354) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.40 - score = 22.63; 9 probable transmembrane helices predicted for TA06955 by TMHMM2.0 at aa 19-41, 138-160, 170-192, 232-254, 292-314, 334-356, 417-439, 459-481 and 491-513; Tpr-related protein family member, putative 975354 3864179 TA06955 Theileria annulata Tpr-related protein family member, putative XP_954004.1 973702 R 5874 CDS TA06950 3864178 complement(975546..976937) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.39 - score = 21.45; chromatin assembly factor subunit, putative 976937 3864178 TA06950 Theileria annulata chromatin assembly factor subunit, putative XP_954005.1 975546 R 5874 CDS TA06945 3864177 complement(977210..977797) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.38 - score = 9.65; 2 probable transmembrane helices predicted for TA06945 by TMHMM2.0 at aa 15-37 and 58-77; Signal anchor predicted for TA06945 by SignalP 2.0 HMM (Signal peptide probability 0.007, signal anchor probability 0.925) with cleavage site probability 0.004 between residues 33 and 34; uncharacterized protein 977797 3864177 TA06945 Theileria annulata uncharacterized protein XP_954006.1 977210 R 5874 CDS TA06940 3864176 978189..980465 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.82 - score = 41.60; GPI-Anchor Signal predicted for TA06940 by DGPI v2.04 with cleavage site probability 0.10399999 near 736; uncharacterized protein 980465 3864176 TA06940 Theileria annulata uncharacterized protein XP_954007.1 978189 D 5874 CDS TA06935 3864175 complement(join(980580..980899,981026..981179)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.37 - score = 12.70; uncharacterized protein 981179 3864175 TA06935 Theileria annulata uncharacterized protein XP_954008.1 980580 R 5874 CDS TA06930 3864174 complement(join(981583..981712,981902..981974,982006..982225)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.36 - score = 11.49; uncharacterized protein 982225 3864174 TA06930 Theileria annulata uncharacterized protein XP_954009.1 981583 R 5874 CDS TA06925 3864173 complement(join(982408..982601,982632..982705,982770..983470,983500..983755,983805..984217)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.35 - score = 34.68; uncharacterized protein 984217 3864173 TA06925 Theileria annulata uncharacterized protein XP_954010.1 982408 R 5874 CDS TA06920 3864172 join(984505..984861,984954..985580,985649..985759,985796..985885) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.83 - score = 33.70; eukaryotic translation initiation factor, putative 985885 3864172 TA06920 Theileria annulata eukaryotic translation initiation factor, putative XP_954011.1 984505 D 5874 CDS TA06915 3864171 986013..987335 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.84 - score = 30.29; uncharacterized protein 987335 3864171 TA06915 Theileria annulata uncharacterized protein XP_954012.1 986013 D 5874 CDS TA06910 3864170 complement(join(987393..987648,987703..987884)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.34 - score = 9.50; clathrin assembly protein, putative 987884 3864170 TA06910 Theileria annulata clathrin assembly protein, putative XP_954013.1 987393 R 5874 CDS TA06905 3863772 join(988146..988476,988513..988574,988617..990740) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.85 - score = 51.51; uncharacterized protein 990740 3863772 TA06905 Theileria annulata uncharacterized protein XP_954014.1 988146 D 5874 CDS TA06900 3863771 990940..993207 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.86 - score = 38.10; 11 probable transmembrane helices predicted for TA06900 by TMHMM2.0 at aa 29-51, 119-141, 151-173, 180-202, 217-239, 510-532, 547-564, 617-639, 659-681, 688-710 and 725-747; Tpr-related protein family member, putative 993207 3863771 TA06900 Theileria annulata Tpr-related protein family member, putative XP_954015.1 990940 D 5874 CDS TA06895 3863770 993322..994827 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.87 - score = 17.31; 10 probable transmembrane helices predicted for TA06895 by TMHMM2.0 at aa 24-46, 128-150, 163-185, 189-211, 232-254, 278-300, 313-335, 360-382, 402-421 and 431-453; Tpr-related protein family member, putative 994827 3863770 TA06895 Theileria annulata Tpr-related protein family member, putative XP_954016.1 993322 D 5874 CDS TA06890 3863769 complement(join(994895..995648,995724..996151)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.33 - score = 23.32; 6 probable transmembrane helices predicted for TA06890 by TMHMM2.0 at aa 80-102, 112-134, 154-176, 196-218, 231-250 and 254-276; uncharacterized protein 996151 3863769 TA06890 Theileria annulata uncharacterized protein XP_954017.1 994895 R 5874 CDS TA06885 3863768 join(997386..997497,997528..998211,998244..998551,998583..998789,998820..999071) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.88 - score = 38.12; tyrosyl-tRNA synthetase, putative 999071 3863768 TA06885 Theileria annulata tyrosyl-tRNA synthetase, putative XP_954018.1 997386 D 5874 CDS TA06880 3863767 complement(999156..1000460) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.32 - score = 18.33; 10 probable transmembrane helices predicted for TA06880 by TMHMM2.0 at aa 13-35, 50-72, 84-106, 116-138, 181-203, 223-245, 258-280, 304-326, 345-367 and 377-399; Tpr-related protein family member, putative 1000460 3863767 TA06880 Theileria annulata Tpr-related protein family member, putative XP_954019.1 999156 R 5874 CDS TA06875 3863766 complement(join(1000633..1000849,1000879..1001142,1001201..1001300,1001333..1001726,1001756..1002215,1002253..1002746,1002779..1002874,1002939..1003253,1003283..1003408,1003448..1003576,1003607..1003707,1003769..1003983,1004065..1004501)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.31 - score = 77.81; 9 probable transmembrane helices predicted for TA06875 by TMHMM2.0 at aa 387-409, 413-435, 512-534, 549-571, 813-830, 845-867, 888-910, 925-944 and 1066-1088; Signal peptide predicted for TA06875 by SignalP 2.0 HMM (Signal peptide probability 0.892, signal anchor probability 0.103) with cleavage site probability 0.851 between residues 30 and 31; uncharacterized protein 1004501 3863766 TA06875 Theileria annulata uncharacterized protein XP_954020.1 1000633 R 5874 CDS TA06870 3863765 join(1005091..1005213,1005255..1005342,1005384..1005586,1005618..1005746,1005776..1006034,1006090..1006299,1006360..1006463,1006514..1006605,1006666..1006864,1006931..1007038,1007076..1007369,1007437..1007718) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.89 - score = 58.81; uncharacterized protein 1007718 3863765 TA06870 Theileria annulata uncharacterized protein XP_954021.1 1005091 D 5874 CDS TA06865 3863764 join(1008419..1008530,1008627..1009150) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.90 - score = 20.89; small GTP-binding protein (RAN subfamily), putative 1009150 3863764 TA06865 Theileria annulata small GTP-binding protein (RAN subfamily), putative XP_954022.1 1008419 D 5874 CDS TA06860 3863763 complement(join(1009270..1009429,1009501..1009679,1009712..1009899,1009943..1010118,1010160..1010791,1010856..1010945,1010980..1011154,1011201..1012254,1012293..1012353)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.30 - score = 71.90; DNA mismatch repair (MLH1) 1012353 3863763 TA06860 Theileria annulata DNA mismatch repair (MLH1) XP_954023.1 1009270 R 5874 CDS TA06855 3863762 join(1013005..1013052,1013086..1014139,1014171..1015042) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.91 - score = 56.48; uncharacterized protein 1015042 3863762 TA06855 Theileria annulata uncharacterized protein XP_954024.1 1013005 D 5874 CDS TA06850 3863761 join(1015184..1015365,1015419..1015563,1015594..1015725) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.92 - score = 15.60; clathrin assembly protein, putative 1015725 3863761 TA06850 Theileria annulata clathrin assembly protein, putative XP_954025.1 1015184 D 5874 CDS TA06845 3863760 complement(join(1015811..1016093,1016126..1016382,1016414..1016515,1016557..1016662,1016748..1016872,1016925..1017108,1017149..1017532,1017575..1018101,1018131..1018175,1018231..1018398)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.29 - score = 75.16; heat-shock protein, putative 1018398 3863760 TA06845 Theileria annulata heat-shock protein, putative XP_954026.1 1015811 R 5874 CDS TA06840 3863759 join(1018717..1021010,1021070..1021539,1021628..1021743,1021827..1021937) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.93 - score = 73.97; uncharacterized protein 1021937 3863759 TA06840 Theileria annulata uncharacterized protein XP_954027.1 1018717 D 5874 CDS TA06835 3863758 join(1022512..1022670,1022729..1022817,1022848..1023041,1023083..1023326,1023395..1023499,1023532..1023877,1023943..1024164) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.94 - score = 35.66; histone acetyltransferase, putative 1024164 3863758 TA06835 Theileria annulata histone acetyltransferase, putative XP_954028.1 1022512 D 5874 CDS TA06830 3863757 complement(join(1024238..1024537,1024569..1024814)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.28 - score = 20.09; uncharacterized protein 1024814 3863757 TA06830 Theileria annulata uncharacterized protein XP_954029.1 1024238 R 5874 CDS TA06825 3863756 complement(1024942..1026612) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.27 - score = 49.72; ribonucleolar protein, putative 1026612 3863756 TA06825 Theileria annulata ribonucleolar protein, putative XP_954030.1 1024942 R 5874 CDS TA06820 3863755 join(1027331..1027514,1027547..1027774,1027808..1027993,1028024..1028179,1028212..1028633,1028666..1028793,1028834..1028921,1028962..1029042) 1 1 NC_011129.2 uncharacterized protein 1029042 3863755 TA06820 Theileria annulata uncharacterized protein XP_954031.1 1027331 D 5874 CDS TA06815 3863754 join(1029167..1029335,1029399..1029474,1029533..1029644,1029816..1029828,1029858..1029924,1029954..1029991,1030030..1030151) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.97 - score = 21.22; uncharacterized protein 1030151 3863754 TA06815 Theileria annulata uncharacterized protein XP_954032.1 1029167 D 5874 CDS TA06810 3864015 complement(join(1030218..1030349,1030403..1030494,1030526..1030570,1030628..1030728,1030757..1030806,1030838..1030895,1030929..1031218)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.26 - score = 26.03; Signal peptide predicted for TA06810 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.055) with cleavage site probability 0.860 between residues 21 and 22; uncharacterized protein 1031218 3864015 TA06810 Theileria annulata uncharacterized protein XP_954033.1 1030218 R 5874 CDS TA06805 3864014 join(1031624..1031903,1031935..1032027,1032059..1032091,1032121..1032166,1032196..1032355) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.98 - score = 19.12; uncharacterized protein 1032355 3864014 TA06805 Theileria annulata uncharacterized protein XP_954034.1 1031624 D 5874 CDS TA06800 3864013 complement(join(1032789..1032929,1032965..1033111)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.25 - score = 6.99; uncharacterized protein 1033111 3864013 TA06800 Theileria annulata uncharacterized protein XP_954035.1 1032789 R 5874 CDS TA06795 3864012 complement(1033159..1036122) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.24 - score = 65.93; uncharacterized protein 1036122 3864012 TA06795 Theileria annulata uncharacterized protein XP_954036.1 1033159 R 5874 CDS TA06790 3864011 join(1036871..1037015,1037077..1037145,1037175..1037452,1037483..1037719,1037751..1037961,1037993..1038111,1038141..1038255,1038294..1038689,1038721..1038929) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.99 - score = 82.63; disrupter of silencing (SAS10) 1038929 3864011 TA06790 Theileria annulata disrupter of silencing (SAS10) XP_954037.1 1036871 D 5874 CDS TA06785 3864010 1039034..1041298 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.100 - score = 76.63; uncharacterized protein 1041298 3864010 TA06785 Theileria annulata uncharacterized protein XP_954038.1 1039034 D 5874 CDS TA06780 3864009 join(1041347..1041547,1041579..1041650,1041681..1041801,1041834..1042244,1042275..1042489,1042520..1042678) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.100 - score = 76.63; uncharacterized protein 1042678 3864009 TA06780 Theileria annulata uncharacterized protein XP_954039.1 1041347 D 5874 CDS TA06775 3864008 complement(join(1042746..1043132,1043164..1044453,1044484..1044615)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.23 - score = 71.78; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA06775 by SignalP 2.0 HMM (Signal peptide probability 0.967, signal anchor probability 0.002) with cleavage site probability 0.848 between residues 19 and 20; uncharacterized protein 1044615 3864008 TA06775 Theileria annulata uncharacterized protein XP_954040.1 1042746 R 5874 CDS TA06770 3864007 complement(join(1045217..1045408,1045445..1045546,1045586..1045618,1045651..1045938)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.22 - score = 22.20; uncharacterized protein 1045938 3864007 TA06770 Theileria annulata uncharacterized protein XP_954041.1 1045217 R 5874 CDS TA06765 3864006 join(1046218..1046329,1046367..1046602,1046638..1046994,1047026..1047205) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.101 - score = 24.57; uncharacterized protein 1047205 3864006 TA06765 Theileria annulata uncharacterized protein XP_954042.1 1046218 D 5874 CDS TA06760 3864005 complement(join(1047453..1047796,1047852..1047911,1047946..1048069)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.21 - score = 16.44; mitochondrial inner membrane protein, putative 1048069 3864005 TA06760 Theileria annulata mitochondrial inner membrane protein, putative XP_954043.1 1047453 R 5874 CDS TA06755 3864004 complement(join(1048203..1048265,1048301..1048345,1048375..1048426,1048456..1048525,1048555..1048705,1048748..1048825,1048855..1048950,1048988..1049026)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.20 - score = 36.25; ubiquitin conjugating enzyme, putative 1049026 3864004 TA06755 Theileria annulata ubiquitin conjugating enzyme, putative XP_954044.1 1048203 R 5874 CDS TA06750 3864003 1050242..1054822 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.102 - score = 113.52; uncharacterized protein 1054822 3864003 TA06750 Theileria annulata uncharacterized protein XP_954045.1 1050242 D 5874 CDS TA06745 3864002 complement(1055026..1057029) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.19 - score = 33.28; 9 probable transmembrane helices predicted for TA06745 by TMHMM2.0 at aa 29-51, 72-94, 99-121, 126-148, 163-185, 253-275, 539-561, 582-604 and 609-631; Tpr-related protein family member, putative 1057029 3864002 TA06745 Theileria annulata Tpr-related protein family member, putative XP_954046.1 1055026 R 5874 CDS TA06740 3864001 complement(1057252..1058778) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.18 - score = 37.58; 11 probable transmembrane helices predicted for TA06740 by TMHMM2.0 at aa 5-27, 47-69, 89-111, 123-145, 150-172, 185-207, 313-335, 348-366, 403-425, 446-468 and 478-500; Signal peptide predicted for TA06740 by SignalP 2.0 HMM (Signal peptide probability 0.770, signal anchor probability 0.004) with cleavage site probability 0.525 between residues 20 and 21; Tpr-related protein family member, putative 1058778 3864001 TA06740 Theileria annulata Tpr-related protein family member, putative XP_954047.1 1057252 R 5874 CDS TA06735 3864000 complement(join(1058998..1059036,1059218..1059351,1059386..1060300,1060331..1060384,1060417..1060456,1060490..1060570)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.18 - score = 37.58; uncharacterized protein 1060570 3864000 TA06735 Theileria annulata uncharacterized protein XP_954048.1 1058998 R 5874 CDS TA06730 3863999 complement(join(1062713..1062862,1062895..1063064,1063099..1063232,1063306..1063465,1063570..1063713,1063743..1063881)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.17 - score = 26.30; cdc2-like kinase 1063881 3863999 TA06730 Theileria annulata cdc2-like kinase XP_954049.1 1062713 R 5874 CDS TA06725 3863998 complement(join(1064185..1064323,1064355..1064421,1064486..1064817,1064848..1064916,1064949..1065083,1065144..1065287,1065342..1065448,1065516..1065597,1065629..1065712,1065762..1066231)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.16 - score = 39.04; 1 probable transmembrane helix predicted for TA06725 by TMHMM2.0 at aa 7-29; glutamyl-tRNA synthetase, putative 1066231 3863998 TA06725 Theileria annulata glutamyl-tRNA synthetase, putative XP_954050.1 1064185 R 5874 CDS TA06720 3863997 1067084..1068430 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.103 - score = 43.43; elongation factor 1 alpha, putative 1068430 3863997 TA06720 Theileria annulata elongation factor 1 alpha, putative XP_954051.1 1067084 D 5874 CDS TA06715 3863996 join(1068641..1068721,1068976..1069145,1069175..1069478,1069538..1069814,1069846..1069982) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.104 - score = 80.26; 1 probable transmembrane helix predicted for TA06715 by TMHMM2.0 at aa 184-206; ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain, putative 1069982 3863996 TA06715 Theileria annulata ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain, putative XP_954052.1 1068641 D 5874 CDS TA06710 3863487 join(1070191..1071045,1071077..1071655,1071717..1071953,1071982..1072170,1072201..1073004) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.104 - score = 80.26; uncharacterized protein 1073004 3863487 TA06710 Theileria annulata uncharacterized protein XP_954053.1 1070191 D 5874 CDS TA06705 3863486 complement(join(1073039..1073220,1073293..1073599)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.15 - score = 7.72; uncharacterized protein 1073599 3863486 TA06705 Theileria annulata uncharacterized protein XP_954054.1 1073039 R 5874 CDS TA06700 3863485 join(1073674..1076834,1076874..1077061,1077166..1077294,1077419..1080613,1080679..1081790) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.105 - score = 170.39; amine oxidase (flavin-containing) 1081790 3863485 TA06700 Theileria annulata amine oxidase (flavin-containing) XP_954055.1 1073674 D 5874 CDS TA06695 3863484 join(1082075..1082458,1082500..1082825,1082858..1082930,1083001..1083078,1083136..1083301,1083331..1083436,1083468..1083673,1083772..1084171,1084201..1084294,1084346..1084825) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.106 - score = 68.39; DNA replication licensing factor (MCM5) 1084825 3863484 TA06695 Theileria annulata DNA replication licensing factor (MCM5) XP_954056.1 1082075 D 5874 CDS TA06690 3863483 1085655..1086134 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.107 - score = 12.40; ubiquitin, putative 1086134 3863483 TA06690 Theileria annulata ubiquitin, putative XP_954057.1 1085655 D 5874 CDS TA06685 3863482 complement(1086304..1090380) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.14 - score = 102.53; 7 probable transmembrane helices predicted for TA06685 by TMHMM2.0 at aa 199-221, 228-245, 390-412, 425-447, 1100-1122, 1287-1309 and 1319-1341; cation ATPase, putative 1090380 3863482 TA06685 Theileria annulata cation ATPase, putative XP_954058.1 1086304 R 5874 CDS TA06680 3863481 1090862..1091974 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.109 - score = 26.48; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA06680 by SignalP 2.0 HMM (Signal peptide probability 0.682, signal anchor probability 0.023) with cleavage site probability 0.551 between residues 20 and 21; uncharacterized protein 1091974 3863481 TA06680 Theileria annulata uncharacterized protein XP_954059.1 1090862 D 5874 CDS TA06675 3863480 complement(join(1092166..1092333,1092366..1092500,1092608..1092844,1092895..1092960)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.13 - score = 15.80; 1 probable transmembrane helix predicted for TA06675 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA06675 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.005) with cleavage site probability 0.751 between residues 21 and 22; uncharacterized protein 1092960 3863480 TA06675 Theileria annulata uncharacterized protein XP_954060.1 1092166 R 5874 CDS TA06670 3863479 1093083..1094627 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.110 - score = 34.06; uncharacterized protein 1094627 3863479 TA06670 Theileria annulata uncharacterized protein XP_954061.1 1093083 D 5874 CDS TA06665 3863478 join(1094716..1094797,1094832..1095373) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.111 - score = 15.90; 30S ribosomal protein S16, putative 1095373 3863478 TA06665 Theileria annulata 30S ribosomal protein S16, putative XP_954062.1 1094716 D 5874 CDS TA06635 3863473 1095634..1098153 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.112 - score = 41.43; 9 probable transmembrane helices predicted for TA06635 by TMHMM2.0 at aa 20-39, 127-149, 159-181, 223-245, 656-678, 685-702, 735-757, 777-799 and 803-825; Tpr-related protein family member, putative 1098153 3863473 TA06635 Theileria annulata Tpr-related protein family member, putative XP_954063.1 1095634 D 5874 CDS TA06580 3863423 1098412..1099746 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.113 - score = 16.46; 9 probable transmembrane helices predicted for TA06580 by TMHMM2.0 at aa 20-42, 108-130, 140-162, 202-224, 256-278, 291-309, 337-359, 380-402 and 407-426; Tpr-related protein family member, putative 1099746 3863423 TA06580 Theileria annulata Tpr-related protein family member, putative XP_954064.1 1098412 D 5874 CDS TA06475 3864534 complement(1099951..1100970) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.12 - score = 61.65; 4 probable transmembrane helices predicted for TA06475 by TMHMM2.0 at aa 35-57, 129-151, 178-200 and 227-249; GPI-Anchor Signal predicted for TA06475 by DGPI v2.04 with cleavage site probability 0.3306 near 305; sugar transporter, putative 1100970 3864534 TA06475 Theileria annulata sugar transporter, putative XP_954065.1 1099951 R 5874 CDS TA06420 3864523 complement(1101179..1101463) 1 1 NC_011129.2 2 probable transmembrane helices predicted for TA06420 by TMHMM2.0 at aa 10-32 and 53-75; Signal peptide predicted for TA06420 by SignalP 2.0 HMM (Signal peptide probability 0.732, signal anchor probability 0.124) with cleavage site probability 0.204 between residues 28 and 29; uncharacterized protein 1101463 3864523 TA06420 Theileria annulata uncharacterized protein XP_954066.1 1101179 R 5874 CDS TA06365 3864218 complement(join(1101752..1101945,1101976..1102063,1102098..1102246,1102277..1102442,1102476..1102553,1102589..1102686,1102716..1102830,1102873..1102947,1102979..1103150,1103198..1103256,1103328..1103375,1103425..1103523,1103558..1103731,1103762..1103878)) 1 1 NC_011129.2 uncharacterized protein 1103878 3864218 TA06365 Theileria annulata uncharacterized protein XP_954067.1 1101752 R 5874 CDS TA06310 3863467 complement(1104121..1105425) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.11 - score = 25.91; clathrin-adaptor (medium) chain, putative 1105425 3863467 TA06310 Theileria annulata clathrin-adaptor (medium) chain, putative XP_954068.1 1104121 R 5874 CDS TA06255 3863456 complement(join(1105866..1106120,1106181..1106514,1106568..1106778,1106807..1106916,1106948..1107000,1107082..1107260,1107338..1107419,1107532..1107615)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.10 - score = 43.57; 26S proteasome subunit, putative 1107615 3863456 TA06255 Theileria annulata 26S proteasome subunit, putative XP_954069.1 1105866 R 5874 CDS TA06250 3863455 join(1107894..1108032,1108065..1108141,1108172..1109072,1109163..1109356,1109392..1109478,1109509..1110405) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.114 - score = 51.84; uncharacterized protein 1110405 3863455 TA06250 Theileria annulata uncharacterized protein XP_954070.1 1107894 D 5874 CDS TA06145 3863700 complement(join(1110461..1112262,1112351..1113866)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.9 - score = 81.24; 26S proteasome regulatory subunit, putative 1113866 3863700 TA06145 Theileria annulata 26S proteasome regulatory subunit, putative XP_954071.1 1110461 R 5874 CDS TA06140 3863699 join(1114727..1116508,1116612..1116905) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.117 - score = 44.50; uncharacterized protein 1116905 3863699 TA06140 Theileria annulata uncharacterized protein XP_954072.1 1114727 D 5874 CDS TA06085 3863804 join(1116941..1116956,1117142..1117374,1117407..1117494,1117601..1117708,1117772..1117872,1117966..1118253,1118284..1118379,1118412..1118561,1118654..1118770,1118841..1119017,1119091..1119396,1119489..1119599) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.118 - score = 38.73; uncharacterized protein 1119599 3863804 TA06085 Theileria annulata uncharacterized protein XP_954073.1 1116941 D 5874 CDS TA05980 3864299 complement(join(1119719..1120051,1120109..1120642,1120718..1120810,1120887..1120983,1121099..1121247,1121277..1121345)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.8 - score = 33.14; molecular chaperone, putative 1121345 3864299 TA05980 Theileria annulata molecular chaperone, putative XP_954074.1 1119719 R 5874 CDS TA05925 3864288 complement(join(1121883..1122227,1122259..1122310,1122362..1122591,1122654..1122701,1122735..1122840,1122879..1123087)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.7 - score = 38.76; uncharacterized protein 1123087 3864288 TA05925 Theileria annulata uncharacterized protein XP_954075.1 1121883 R 5874 CDS TA05870 3864277 complement(1123466..1126027) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.6 - score = 49.03; Signal peptide predicted for TA05870 by SignalP 2.0 HMM (Signal peptide probability 0.938, signal anchor probability 0.000) with cleavage site probability 0.522 between residues 22 and 23; rhoptry-associated protein, putative 1126027 3864277 TA05870 Theileria annulata rhoptry-associated protein, putative XP_954076.1 1123466 R 5874 CDS TA05815 3863565 complement(1126651..1128534) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.5 - score = 30.59; Signal peptide predicted for TA05815 by SignalP 2.0 HMM (Signal peptide probability 0.824, signal anchor probability 0.084) with cleavage site probability 0.391 between residues 26 and 27; uncharacterized protein 1128534 3863565 TA05815 Theileria annulata uncharacterized protein XP_954077.1 1126651 R 5874 CDS TA05760 3863554 complement(1129286..1131043) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.4 - score = 46.24; Signal peptide predicted for TA05760 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.001) with cleavage site probability 0.878 between residues 22 and 23; rhoptry-associated protein, putative 1131043 3863554 TA05760 Theileria annulata rhoptry-associated protein, putative XP_954078.1 1129286 R 5874 CDS TA05705 3863921 complement(1131774..1133951) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.3 - score = 53.66; Signal peptide predicted for TA05705 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.500 between residues 21 and 22; rhoptry-associated protein, putative 1133951 3863921 TA05705 Theileria annulata rhoptry-associated protein, putative XP_954079.1 1131774 R 5874 CDS TA05650 3863910 complement(join(1134497..1134550,1134580..1134705,1134736..1134765,1134796..1134960)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.2 - score = 20.29; uncharacterized protein 1134960 3863910 TA05650 Theileria annulata uncharacterized protein XP_954080.1 1134497 R 5874 CDS TA05645 3863909 join(1135184..1135336,1135369..1135548,1135648..1135920,1136155..1136224,1136256..1136740,1137061..1137201,1137234..1137328,1137418..1137552,1137946..1138843,1138905..1138996,1139464..1139819,1139876..1141506) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.120 - score = 53.58; DEAD-box-family helicase, putative 1141506 3863909 TA05645 Theileria annulata DEAD-box-family helicase, putative XP_954081.1 1135184 D 5874 CDS TA05640 3863908 join(1142178..1142451,1143526..1143809) 1 1 NC_011129.2 2 probable transmembrane helices predicted for TA05640 by TMHMM2.0 at aa 62-84 and 94-108; uncharacterized protein 1143809 3863908 TA05640 Theileria annulata uncharacterized protein XP_954082.1 1142178 D 5874 CDS TA05635 3863907 1144122..1144613 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.122 - score = 7.18; 2 probable transmembrane helices predicted for TA05635 by TMHMM2.0 at aa 114-136 and 140-162; uncharacterized protein 1144613 3863907 TA05635 Theileria annulata uncharacterized protein XP_954083.1 1144122 D 5874 CDS TA05630 3863527 join(1146267..1146530,1146668..1146788,1146852..1146951,1147054..1147201,1147318..1147431) 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.123 - score = 12.57; phosphotyrosyl phosphatase activator (PPTA) protein, putative 1147431 3863527 TA05630 Theileria annulata phosphotyrosyl phosphatase activator (PPTA) protein, putative XP_954084.1 1146267 D 5874 CDS TA05626 3863526 join(1147771..1147896,1148020..1148103,1148136..1148246,1148969..1149832) 1 1 NC_011129.2 uncharacterized protein 1149832 3863526 TA05626 Theileria annulata uncharacterized protein XP_954085.1 1147771 D 5874 CDS TA05625 3863525 join(1150624..1150648,1150900..1152986) 1 1 NC_011129.2 uncharacterized protein 1152986 3863525 TA05625 Theileria annulata uncharacterized protein XP_954086.1 1150624 D 5874 CDS TA05620 3863524 join(1153549..1153777,1154018..1154382,1154492..1154572) 1 1 NC_011129.2 uncharacterized protein 1154572 3863524 TA05620 Theileria annulata uncharacterized protein XP_954087.1 1153549 D 5874 CDS TA05615 3863523 1155914..1156504 1 1 NC_011129.2 Tap349e08.q2ks7.C.cand.127 - score = 14.65; Signal peptide predicted for TA05615 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.966 between residues 17 and 18; uncharacterized protein 1156504 3863523 TA05615 Theileria annulata uncharacterized protein XP_954088.1 1155914 D 5874 CDS TA05610 3863522 complement(join(1156841..1158683,1158742..1158773)) 1 1 NC_011129.2 Tap349e08.q2ks7.cand.1 - score = 30.40; uncharacterized protein 1158773 3863522 TA05610 Theileria annulata uncharacterized protein XP_954089.1 1156841 R 5874 CDS TA05605 3863521 join(1158826..1158829,1159119..1159231,1159319..1160182) 1 1 NC_011129.2 uncharacterized protein 1160182 3863521 TA05605 Theileria annulata uncharacterized protein XP_954090.1 1158826 D 5874 CDS TA18476 3864315 1161513..1165313 1 1 NC_011129.2 uncharacterized protein 1165313 3864315 TA18476 Theileria annulata uncharacterized protein XP_954091.1 1161513 D 5874 CDS TA02750 3863964 complement(join(1167748..1168136,1168377..1168617,1168722..1168853,1169219..1169905,1170021..1170131)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.47 - score = 16.97; SMART pfam:asp (PF00026) at aa 135-471, E()=4.90e-18; pepsinogen, putative 1170131 3863964 TA02750 Theileria annulata pepsinogen, putative XP_954092.1 1167748 R 5874 CDS TA02755 3863965 join(1171727..1172666,1172732..1172786,1172903..1173019,1173143..1173209,1173240..1173430,1173482..1173608,1173687..1173827,1173868..1173966) 1 1 NC_011129.2 SMART 2 transmembrane domains at aa 443-465 and 472-494; 2 probable transmembrane helices predicted for TA02755 by TMHMM2.0 at aa 443-465 and 472-494; uncharacterized protein 1173966 3863965 TA02755 Theileria annulata uncharacterized protein XP_954093.1 1171727 D 5874 CDS TA02760 3863966 complement(join(1176417..1178363,1178512..1178595)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.46 - score = 29.77; uncharacterized protein 1178595 3863966 TA02760 Theileria annulata uncharacterized protein XP_954094.1 1176417 R 5874 CDS TA02765 3863967 complement(join(1179883..1180765,1182021..1183440,1183661..1183849,1184014..1184104,1184213..1184332,1184458..1184584,1185185..1185333)) 1 1 NC_011129.2 could have another exon in between the exonVI & exon VII; SMART pfam:Adaptin_N (PF01602) at aa 1-471, E()=4.00e-02; coatamer, beta subunit, putative 1185333 3863967 TA02765 Theileria annulata coatamer, beta subunit, putative XP_954095.1 1179883 R 5874 CDS TA02770 3863968 complement(1186502..1186945) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.43 - score = 8.99; Signal peptide predicted for TA02770 by SignalP 2.0 HMM (Signal peptide probability 0.640, signal anchor probability 0.007) with cleavage site probability 0.426 between residues 21 and 22; uncharacterized protein 1186945 3863968 TA02770 Theileria annulata uncharacterized protein XP_954096.1 1186502 R 5874 CDS TA02775 3863969 complement(join(1187102..1187260,1187662..1187829,1188154..1188361,1188470..1188639,1188892..1189380)) 1 1 NC_011129.2 SMART pfam:Ribosomal_L15 (PF01305) at aa 160-253, E()=1.10e-03; ribosomal protein L15, putative 1189380 3863969 TA02775 Theileria annulata ribosomal protein L15, putative XP_954097.1 1187102 R 5874 CDS TA02780 3863970 complement(join(1189450..1191717,1191807..1191917)) 1 1 NC_011129.2 uncharacterized protein 1191917 3863970 TA02780 Theileria annulata uncharacterized protein XP_954098.1 1189450 R 5874 CDS TA02785 3863971 join(1193314..1193360,1193392..1193408,1193438..1193570,1193686..1193780,1193856..1193947,1194022..1194057,1194091..1194103,1194133..1194218,1194306..1194353) 1 1 NC_011129.2 Tap152h01.q1c.cand.2 - score = 25.87; Signal peptide predicted for TA02785 by SignalP 2.0 HMM (Signal peptide probability 0.897, signal anchor probability 0.000) with cleavage site probability 0.658 between residues 15 and 16; uncharacterized protein 1194353 3863971 TA02785 Theileria annulata uncharacterized protein XP_954099.1 1193314 D 5874 CDS TA02790 3863972 complement(join(1194458..1194642,1194848..1195142)) 1 1 NC_011129.2 SMART pfam:COX2 (PF00116) at aa 2-156, E()=5.60e-51; cytochrome C oxidase subunit II (COX2) 1195142 3863972 TA02790 Theileria annulata cytochrome C oxidase subunit II (COX2) XP_954100.1 1194458 R 5874 CDS TA02795 3863973 complement(join(1196179..1196447,1196787..1196893,1197406..1197506)) 1 1 NC_011129.2 SMART pfam:Ribosomal_L17 (PF01196) at aa 32-129, E()=1.90e-08; 50 ribosomal protein L17, putative 1197506 3863973 TA02795 Theileria annulata 50 ribosomal protein L17, putative XP_954101.1 1196179 R 5874 CDS TA02800 3863974 join(1197689..1198858,1198969..1199121,1199315..1199392,1199424..1199898,1200029..1200104,1200190..1200914,1201036..1201056,1201166..1201197) 1 1 NC_011129.2 SMART pfam:MMR_HSR1 (Pf01926) at aa 409-806, E()=4.90e-28; GTPase, putative 1201197 3863974 TA02800 Theileria annulata GTPase, putative XP_954102.1 1197689 D 5874 CDS TA02805 3863975 complement(join(1201366..1202627,1202936..1203305)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.40 - score = 21.32; SMART 1 transmembrane domain at aa 519-538; 1 probable transmembrane helix predicted for TA02805 by TMHMM2.0 at aa 519-538; uncharacterized protein 1203305 3863975 TA02805 Theileria annulata uncharacterized protein XP_954103.1 1201366 R 5874 CDS TA02810 3864407 join(1205203..1205749,1206045..1207627) 1 1 NC_011129.2 Tap152h01.q1c.cand.5 - score = 32.02; SMART S_TKc (SM0220) at aa 15-315, E()=8.77e-102; protein kinase, putative 1207627 3864407 TA02810 Theileria annulata protein kinase, putative XP_954104.1 1205203 D 5874 CDS TA02815 3864408 1207816..1209117 1 1 NC_011129.2 Tap152h01.q1c.cand.6 - score = 32.61; SMART pfam:GAR_B (PF02842) at aa 46-124, E()=1.30e-02; pfam:ATP-grasp (PF02222) at aa 64-244, E()=6.40e-23; pfam:ligase_CoA (PF00549) at aa 291-433, E()=1.60e-44; succinyl-coA ligase, subunit, putative 1209117 3864408 TA02815 Theileria annulata succinyl-coA ligase, subunit, putative XP_954105.1 1207816 D 5874 CDS TA02820 3864409 complement(join(1209208..1209376,1209465..1209535,1209599..1209733,1209807..1209887,1209917..1210078,1210173..1210319)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.39 - score = 18.43; uncharacterized protein 1210319 3864409 TA02820 Theileria annulata uncharacterized protein XP_954106.1 1209208 R 5874 CDS TA02825 3864410 join(1210973..1211044,1211074..1211138,1211275..1211524) 1 1 NC_011129.2 Tap152h01.q1c.cand.7 - score = 14.46; SMART pfam:KOW (PF00467) at aa 8-40, E()=6.40e-02; pfam:Ribosomal_L14e (PF01929) at aa 48-124, E()=1.10e-20; 60S ribosomal protein L14, putative 1211524 3864410 TA02825 Theileria annulata 60S ribosomal protein L14, putative XP_954107.1 1210973 D 5874 CDS TA02830 3864411 complement(join(1211674..1212262,1212307..1212773,1212833..1213021,1213116..1213255,1213290..1213371,1213469..1213537)) 1 1 NC_011129.2 uncharacterized protein 1213537 3864411 TA02830 Theileria annulata uncharacterized protein XP_954108.1 1211674 R 5874 CDS TA02835 3864412 complement(join(1213816..1213973,1214037..1214100,1214131..1214940)) 1 1 NC_011129.2 uncharacterized protein 1214940 3864412 TA02835 Theileria annulata uncharacterized protein XP_954109.1 1213816 R 5874 CDS TA02840 3864413 join(1215325..1215400,1215509..1215691,1215734..1216130,1216163..1216382,1216490..1216509,1216626..1216824) 1 1 NC_011129.2 Tap152h01.q1c.cand.8 - score = 20.57; uncharacterized protein 1216824 3864413 TA02840 Theileria annulata uncharacterized protein XP_954110.1 1215325 D 5874 CDS TA02845 3864414 1217435..1225972 1 1 NC_011129.2 Tap152h01.q1c.cand.9 - score = 185.03; SMART 3 pfam:DUF529 (PF04385) domains at aa 709-858, E()=3.50e-23; 949-1095, E()=2.00e-09; 1242-1393, E()=6.40e-27; SfiI-subtelomeric fragment related protein family member, putative 1225972 3864414 TA02845 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954111.1 1217435 D 5874 CDS TA02850 3864415 complement(join(1226749..1226871,1226968..1227021)) 1 1 NC_011129.2 SMART pfam:Nop10p (PF04135) at aa 3-53, E()=9.70e-25; nucleolar protein (Nop10) 1227021 3864415 TA02850 Theileria annulata nucleolar protein (Nop10) XP_954112.1 1226749 R 5874 CDS TA02855 3864416 join(1227224..1227406,1227493..1227639,1227696..1228013) 1 1 NC_011129.2 Tap152h01.q1c.cand.10 - score = 44.99; SMARt pfam:DUF602 (PF04641) at aa 1-213, E()=1.00e-11; uncharacterized protein 1228013 3864416 TA02855 Theileria annulata uncharacterized protein XP_954113.1 1227224 D 5874 CDS TA02860 3864417 join(1228174..1228678,1228708..1228847,1228889..1228977,1229008..1229092,1229122..1229160,1229190..1229249,1229283..1229861) 1 1 NC_011129.2 Tap152h01.q1c.cand.10 - score = 44.99; uncharacterized protein 1229861 3864417 TA02860 Theileria annulata uncharacterized protein XP_954114.1 1228174 D 5874 CDS TA02865 3864418 1230500..1231906 1 1 NC_011129.2 Tap152h01.q1c.cand.11 - score = 17.86; SMART 9 transmembrane domains at aa 95-117, 124-146, 150-172, 185-207, 246-268, 280-297, 312-332, 353-375 and 385-407; 10 probable transmembrane helices predicted for TA02865 by TMHMM2.0 at aa 17-36, 95-117, 124-146, 150-172, 185-207, 246-268, 280-297, 312-332, 353-375 and 385-407; Tpr-related protein family member, putative 1231906 3864418 TA02865 Theileria annulata Tpr-related protein family member, putative XP_954115.1 1230500 D 5874 CDS TA02870 3864419 complement(join(1232088..1233074,1233176..1233475)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.36 - score = 26.00; SMART 1 transmembrane domain at aa 270-292; 1 probable transmembrane helix predicted for TA02870 by TMHMM2.0 at aa 270-292; uncharacterized protein 1233475 3864419 TA02870 Theileria annulata uncharacterized protein XP_954116.1 1232088 R 5874 CDS TA02875 3864420 complement(join(1234471..1234623,1234654..1234806,1234882..1235859)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.34 - score = 32.94; uncharacterized protein 1235859 3864420 TA02875 Theileria annulata uncharacterized protein XP_954117.1 1234471 R 5874 CDS TA02880 3864421 complement(join(1236420..1236581,1236619..1236834,1236868..1237092,1237146..1237218,1237248..1237325,1237376..1237503,1237533..1237690,1237740..1237895,1237976..1238270,1238347..1238410,1238463..1239709,1239745..1239821,1239853..1239925)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.33 - score = 75.80; SMART MCM (SM00350) at aa 379-886, E()=1.37e-20; AAA (SM00382) at aa 613-762, E()=2.53e-04; minichromosome maintenance (MCM), putative 1239925 3864421 TA02880 Theileria annulata minichromosome maintenance (MCM), putative XP_954118.1 1236420 R 5874 CDS TA02885 3864422 join(1240452..1240563,1240673..1240774,1240803..1240893,1240968..1241047,1241107..1241286,1241316..1241440) 1 1 NC_011129.2 Tap152h01.q1c.cand.12 - score = 24.55; SMART DnaJ (SM00271) at aa 7-66, E()=2.38e-29; molecular chaperone, putative 1241440 3864422 TA02885 Theileria annulata molecular chaperone, putative XP_954119.1 1240452 D 5874 CDS TA02890 3864423 complement(join(1241619..1241807,1241940..1242206,1242282..1242514,1242546..1242660,1242740..1243270)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.32 - score = 32.02; SMART HDc (SM00471) at aa 167-335, E()=6.10e-04; phosphodiesterase, putative 1243270 3864423 TA02890 Theileria annulata phosphodiesterase, putative XP_954120.1 1241619 R 5874 CDS TA02895 3864424 complement(join(1244039..1244274,1244334..1244545,1244581..1245179)) 1 1 NC_011129.2 SMART pfam:Ribosomal_S18 (PF01084) at aa 261-314, E()=1.80e-13; uncharacterized protein 1245179 3864424 TA02895 Theileria annulata uncharacterized protein XP_954121.1 1244039 R 5874 CDS TA02900 3864425 join(1245536..1249098,1249129..1249309) 1 1 NC_011129.2 SMART 2 transmembrane domains at aa 1178-1200 and 1207-1229; 2 probable transmembrane helices predicted for TA02900 by TMHMM2.0 at aa 1178-1200 and 1207-1229; uncharacterized protein 1249309 3864425 TA02900 Theileria annulata uncharacterized protein XP_954122.1 1245536 D 5874 CDS TA02905 3864387 complement(join(1249395..1249733,1249804..1250354,1250390..1251148,1251216..1251276)) 1 1 NC_011129.2 uncharacterized protein 1251276 3864387 TA02905 Theileria annulata uncharacterized protein XP_954123.1 1249395 R 5874 CDS TA02910 3864388 complement(join(1251711..1252345,1252403..1253249)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.29 - score = 27.89; SMART pfam:Clat_adaptor_s (PF01217) at aa 1-135, E()=4.40e-02; pfam:Adap_comp_sub (PF00928) at aa 5-490, E()=3.70e-30; adaptor protein, putative 1253249 3864388 TA02910 Theileria annulata adaptor protein, putative XP_954124.1 1251711 R 5874 CDS TA02915 3864389 1254087..1255133 1 1 NC_011129.2 Tap152h01.q1c.cand.14 - score = 27.49; SMART pfam:GDPD (PF03009) at aa 9-341, E()=1.40e-04; uncharacterized protein 1255133 3864389 TA02915 Theileria annulata uncharacterized protein XP_954125.1 1254087 D 5874 CDS TA02920 3864390 complement(join(1255202..1258323,1258394..1258730)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.28 - score = 95.44; uncharacterized protein 1258730 3864390 TA02920 Theileria annulata uncharacterized protein XP_954126.1 1255202 R 5874 CDS TA02925 3864391 complement(join(1259859..1260100,1260169..1260559,1260619..1261110)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.27 - score = 23.75; SMART pfam:adh_short (PF00106) at aa 3-331, E()=1.30e-09; short chain dehydrogenase, putative 1261110 3864391 TA02925 Theileria annulata short chain dehydrogenase, putative XP_954127.1 1259859 R 5874 CDS TA02930 3864392 complement(1261190..1264015) 1 1 NC_011129.2 uncharacterized protein 1264015 3864392 TA02930 Theileria annulata uncharacterized protein XP_954128.1 1261190 R 5874 CDS TA02935 3864393 complement(join(1264165..1264994,1265044..1265216,1265266..1265339,1265401..1265472,1265504..1265601,1265640..1265718,1265784..1265933,1265964..1266134,1266218..1266310,1266382..1266519)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.26 - score = 71.74; SMART 5 transmembrane domains at aa 45-67, 106-128, 149-171, 181-203 and 224-246; RING (SM00184) at aa 304-342, E()=2.17e-05; ZnF_NFX (SM00438) at aa 320-344, E()=0.00e+00; 6 probable transmembrane helices predicted for TA02935 by TMHMM2.0 at aa 10-32, 45-67, 106-128, 149-171, 181-203 and 224-246; Signal peptide predicted for TA02935 by SignalP 2.0 HMM (Signal peptide probability 0.665, signal anchor probability 0.064) with cleavage site probability 0.196 between residues 22 and 23; uncharacterized protein 1266519 3864393 TA02935 Theileria annulata uncharacterized protein XP_954129.1 1264165 R 5874 CDS TA02940 3864394 join(1266666..1267305,1267391..1267839) 1 1 NC_011129.2 Tap152h01.q1c.cand.15 - score = 41.42; ribosomal protein L1, putative 1267839 3864394 TA02940 Theileria annulata ribosomal protein L1, putative XP_954130.1 1266666 D 5874 CDS TA02945 3864395 join(1268000..1268119,1268172..1269048,1269113..1269888) 1 1 NC_011129.2 Tap152h01.q1c.cand.15 - score = 41.42; SMART 1 transmembrane domain at aa 572-589; 1 probable transmembrane helix predicted for TA02945 by TMHMM2.0 at aa 572-589; Tpr-related protein family member, putative 1269888 3864395 TA02945 Theileria annulata Tpr-related protein family member, putative XP_954131.1 1268000 D 5874 CDS TA02955 3864396 1270141..1272009 1 1 NC_011129.2 Tap152h01.q1c.cand.16 - score = 74.60; Tpr-related protein family member, putative 1272009 3864396 TA02955 Theileria annulata Tpr-related protein family member, putative XP_954132.1 1270141 D 5874 CDS TA02960 3864397 join(1272358..1272777,1272808..1273112,1273158..1274507,1274570..1275482,1275548..1276118,1276153..1276346,1276394..1277254) 1 1 NC_011129.2 Theileria parva Tpr-like protein, distantly related, mixture; SMART 3 transmembrane domains at aa 36-58, 78-100 and 112-134; 1 probable transmembrane helix predicted for TA02960 by TMHMM2.0 at aa 28-50; Signal anchor predicted for TA02960 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.995) with cleavage site probability 0.001 between residues 45 and 46; Tpr-related protein family member, putative 1277254 3864397 TA02960 Theileria annulata Tpr-related protein family member, putative XP_954133.1 1272358 D 5874 CDS TA02965 3864398 complement(join(1277259..1277501,1277560..1277634)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.25 - score = 83.65; SMART pfam:Ribosomal_S25 (PF03297) at aa 1-104, E()=1.10e-40; 40S ribosomal S25 protein, putative 1277634 3864398 TA02965 Theileria annulata 40S ribosomal S25 protein, putative XP_954134.1 1277259 R 5874 CDS TA02970 3864399 complement(join(1277915..1278492,1278637..1278715,1278801..1278941,1278981..1279259,1279344..1279486,1279580..1279790)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.25 - score = 83.65; SMART pfam:RNA_pol_Rpc34 (PF05150) at aa 7-297, E()=2.30e-08; 4 transmembrane domains at aa 298-317, 322-344, 408-430 and 437-459; 4 probable transmembrane helices predicted for TA02970 by TMHMM2.0 at aa 298-317, 322-344, 408-430 and 437-459; DNA-directed RNA polymerase III (-specific) subunit (RPC34) 1279790 3864399 TA02970 Theileria annulata DNA-directed RNA polymerase III (-specific) subunit (RPC34) XP_954135.1 1277915 R 5874 CDS TA02975 3864400 complement(join(1280029..1280392,1280428..1280444,1280463..1280627,1280676..1280799,1280836..1280964,1280998..1281446)) 1 1 NC_011129.2 SMART 1 transmembrane domain at aa 49-71; 1 probable transmembrane helix predicted for TA02975 by TMHMM2.0 at aa 49-71; uncharacterized protein 1281446 3864400 TA02975 Theileria annulata uncharacterized protein XP_954136.1 1280029 R 5874 CDS TA02980 3864401 complement(1281560..1283908) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.25 - score = 83.65; SMART pfam:AMA-1 (PF02430) at aa 204-739, E()=1.30e-16; 1 probable transmembrane helix predicted for TA02980 by TMHMM2.0 at aa 693-715; integral membrane protein (apical merozoite antigen), putative 1283908 3864401 TA02980 Theileria annulata integral membrane protein (apical merozoite antigen), putative XP_954137.1 1281560 R 5874 CDS TA02985 3864402 complement(join(1284582..1285026,1285108..1285318,1285395..1286085)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.24 - score = 25.81; SMART 2 transmembrane domains at aa 85-107 and 122-141; pfam:CDC50 (PF03381) at aa 228-444, E()=1.10e-03; 3 probable transmembrane helices predicted for TA02985 by TMHMM2.0 at aa 85-107, 122-141 and 412-434; uncharacterized protein 1286085 3864402 TA02985 Theileria annulata uncharacterized protein XP_954138.1 1284582 R 5874 CDS TA02990 3864403 join(1287241..1287523,1287613..1289075,1289190..1289357) 1 1 NC_011129.2 Tap152h01.q1c; uncharacterized protein 1289357 3864403 TA02990 Theileria annulata uncharacterized protein XP_954139.1 1287241 D 5874 CDS TA02995 3864404 1290014..1294966 1 1 NC_011129.2 Tap152h01.q1c.cand.19 - score = 88.65; SMART 3 pfam:DUF29 (PF04385) domains at aa 544-683, E()=5.80e-74; 969-1097, E()=3.00e-07; 1437-1600, E()=2.90e-16; pfam:EMA (PF02468) at aa 518-714, E()=2.20e-02; SfiI-subtelomeric fragment related protein family member, putative 1294966 3864404 TA02995 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954140.1 1290014 D 5874 CDS TA03000 3864405 complement(1295306..1299889) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.22 - score = 54.35; SMART 5 transmembrane domains at aa 143-165, 178-200, 288-310, 317-339 and 444-466; ZnF_NFX (SM00438) at aa 242-264, E()=0.00e+00; 2 AAA (SM00382) domains at aa 548-747, E()=3.31e-01; 1264-1498, E()=8.15e-02; pfam:ABC_membrane (PF00664) at aa 847-1135, E()=5.90e-03; 10 probable transmembrane helices predicted for TA03000 by TMHMM2.0 at aa 143-165, 178-200, 288-310, 317-339, 444-466, 837-859, 900-922, 976-998, 1002-1021 and 1085-1107; (subtelomeric) ABC-transporter protein family member, putative 1299889 3864405 TA03000 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_954141.1 1295306 R 5874 CDS TA03005 3864406 join(1300385..1300561,1300603..1300722,1300763..1300885,1300938..1301039,1301208..1301358,1301399..1301456,1301492..1301633,1301724..1301899,1301932..1302034,1302087..1302148,1302266..1302719) 1 1 NC_011129.2 uncharacterized protein 1302719 3864406 TA03005 Theileria annulata uncharacterized protein XP_954142.1 1300385 D 5874 CDS TA03010 3863869 complement(1302863..1303576) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.21 - score = 30.54; SMART ZnF_NFX (SM00438) at aa 95-112, E()=0.00e+00; uncharacterized protein 1303576 3863869 TA03010 Theileria annulata uncharacterized protein XP_954143.1 1302863 R 5874 CDS TA03015 3863870 complement(join(1303778..1304146,1304214..1304315,1304358..1304435,1304468..1304509)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.21 - score = 30.54; SMART pfam:DIM1 (PF02966) at aa 2-190, E()=6.70e-69; 1 probable transmembrane helix predicted for TA03015 by TMHMM2.0 at aa 163-185; U5 snRNP-specific component (DIM1) 1304509 3863870 TA03015 Theileria annulata U5 snRNP-specific component (DIM1) XP_954144.1 1303778 R 5874 CDS TA03020 3863871 join(1304808..1306228,1306297..1306479,1306542..1306759,1306829..1307026,1307094..1307330,1307397..1307977) 1 1 NC_011129.2 Tap152h01.q1c.cand.21 - score = 212.81; SMART DEXDc (SM00487) at aa 301-485, E()=1.50e-34; AAA (SM00382) at aa 318-457, E()=4.98e-03; HELICc (SM00490) at aa 526-633, E()=1.38e-15; pfam:HA2 (PF04408) at aa 692-787, E()=1.40e-30; DEAD-box family helicase, putative 1307977 3863871 TA03020 Theileria annulata DEAD-box family helicase, putative XP_954145.1 1304808 D 5874 CDS TA03025 3863872 join(1308022..1308048,1308110..1314454) 1 1 NC_011129.2 Tap152h01.q1c.cand.21 - score = 212.81; SMART 8 pfam:DUF529 (PF04385) domains at aa 85-223, E()=1.40e-65; 440-593, E()=2.90e-25; 862-1008, E()=6.90e-34; 1052-1190, E()=1.50e-62; 1257-1398, E()=5.10e-67; 1402-1600, E()=2.60e-75; 1696-1836, E()=6.10e-70; 1884-2019, E()=1.00e-57; ZnF_NFX (SM00438) at aa 797-823, E()=0.00e+00; SfiI-subtelomeric fragment related protein family member, putative 1314454 3863872 TA03025 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954146.1 1308022 D 5874 CDS TA03030 3863873 complement(join(1315117..1315277,1315337..1315430,1315519..1315595,1315627..1315739,1315772..1315810,1315967..1316036,1316168..1316381)) 1 1 NC_011129.2 SMART RAB 38-209, E()=1.96e-72; 1 probable transmembrane helix predicted for TA03030 by TMHMM2.0 at aa 205-227; Rab5 GTPase, putative 1316381 3863873 TA03030 Theileria annulata Rab5 GTPase, putative XP_954147.1 1315117 R 5874 CDS TA03035 3863874 complement(join(1316645..1316730,1316815..1316952,1316984..1317053,1317153..1317217,1317247..1317349)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.20 - score = 22.75; SMART pfam:EFP (PF01132) at aa 19-152, E()=1.50e-05; elongation factor (prokaryotic EFP) 1317349 3863874 TA03035 Theileria annulata elongation factor (prokaryotic EFP) XP_954148.1 1316645 R 5874 CDS TA03040 3863875 complement(join(1317498..1317613,1317673..1317754,1317989..1318003,1318030..1318071,1318413..1318550)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.19 - score = 10.89; SMART RRM (SM00360) at aa 66-130, E()=3.74e-05; uncharacterized protein 1318550 3863875 TA03040 Theileria annulata uncharacterized protein XP_954149.1 1317498 R 5874 CDS TA03045 3863876 join(1318752..1319075,1319207..1319440,1319530..1319703,1319987..1320066,1320199..1320284,1320315..1320394,1320425..1320540,1320594..1320749,1320791..1320881) 1 1 NC_011129.2 Tap152h01.q1c.cand.22 - score = 12.82; SMART pfam:UPF0020 (PF01170) at aa 225-404, E()=4.40e-07; uncharacterized protein 1320881 3863876 TA03045 Theileria annulata uncharacterized protein XP_954150.1 1318752 D 5874 CDS TA03050 3863877 complement(join(1320991..1321235,1321308..1321372,1321410..1321597,1321643..1321751,1321841..1322022,1322256..1322396)) 1 1 NC_011129.2 SMART pfam:TP_methylase (PF00590) at aa 2-222, E()=9.50e-07; diphtine synthase, putative 1322396 3863877 TA03050 Theileria annulata diphtine synthase, putative XP_954151.1 1320991 R 5874 CDS TA03055 3863878 join(1322823..1322942,1323049..1323153,1323318..1323458,1323582..1323944) 1 1 NC_011129.2 SMART pfam:ADK (PF00406) at aa 32-218, E()=2.20e-74; pfam:ADK_lid (PF05191) at aa 154-189, E()=1.10e-19; adenylate kinase, putative 1323944 3863878 TA03055 Theileria annulata adenylate kinase, putative XP_954152.1 1322823 D 5874 CDS TA03060 3863879 1324270..1324944 1 1 NC_011129.2 Tap152h01.q1c.cand.24 - score = 12.45; SfiI-subtelomeric fragment related protein family member, putative 1324944 3863879 TA03060 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954153.1 1324270 D 5874 CDS TA03065 3863880 complement(join(1325193..1325942,1326247..1326420)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.17 - score = 14.54; SMART 2 ZnF_C2H2 (SM00355) domains at aa 13-36, E()=8.52e+00; 37-60, E()=8.34e-03; uncharacterized protein 1326420 3863880 TA03065 Theileria annulata uncharacterized protein XP_954154.1 1325193 R 5874 CDS TA03070 3863881 complement(join(1326857..1327918,1327962..1328065,1328106..1328682)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.16 - score = 28.96; SMART 3 transmembrane domains at aa 12-34, 49-71 and 201-223; 3 probable transmembrane helices predicted for TA03070 by TMHMM2.0 at aa 12-34, 49-71 and 201-223; uncharacterized protein 1328682 3863881 TA03070 Theileria annulata uncharacterized protein XP_954155.1 1326857 R 5874 CDS TA03075 3863882 join(1328983..1329100,1329359..1329550,1329665..1329868,1330083..1330237) 1 1 NC_011129.2 SMART 2 pfam:TBP (PF00352) at aa 41-126, E()=7.20e-32; 132-221, E()=2.10e-27; transcription initiation factor (TBP) 1330237 3863882 TA03075 Theileria annulata transcription initiation factor (TBP) XP_954156.1 1328983 D 5874 CDS TA03080 3863883 join(1330942..1334089,1334204..1334334,1334521..1334642,1334744..1335044) 1 1 NC_011129.2 Tap152h01.q1c.cand.26 - score = 72.72; SMART MIF4G (SM00543) at aa 648-952, E()=7.64e-16; uncharacterized protein 1335044 3863883 TA03080 Theileria annulata uncharacterized protein XP_954157.1 1330942 D 5874 CDS TA03085 3863884 complement(join(1335076..1335310,1335475..1335633,1335665..1336101,1336343..1336375,1336411..1336430,1336561..1336738)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.15 - score = 8.46; uncharacterized protein 1336738 3863884 TA03085 Theileria annulata uncharacterized protein XP_954158.1 1335076 R 5874 CDS TA03090 3863885 complement(join(1337014..1337268,1337341..1337418,1337567..1337648,1337812..1337964,1338101..1338381)) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.14 - score = 11.59; uncharacterized protein 1338381 3863885 TA03090 Theileria annulata uncharacterized protein XP_954159.1 1337014 R 5874 CDS TA03095 3863886 1338579..1338896 1 1 NC_011129.2 Tap152h01.q1c.cand.27 - score = 7.29; uncharacterized protein 1338896 3863886 TA03095 Theileria annulata uncharacterized protein XP_954160.1 1338579 D 5874 CDS TA03100 3863887 join(1339179..1339290,1339459..1339719,1339834..1340010,1340226..1340896) 1 1 NC_011129.2 Tap152h01.q1c.cand.28 - score = 17.81; SMART 2 WD40 (SM0320) domains at aa 242-282, E()=1.12e-02; 285-326, E()=3.07e+01; uncharacterized protein 1340896 3863887 TA03100 Theileria annulata uncharacterized protein XP_954161.1 1339179 D 5874 CDS TA03105 3863508 1341012..1341167 1 1 NC_011129.2 Tap152h01.q1c.cand.28 - score = 17.81; uncharacterized protein 1341167 3863508 TA03105 Theileria annulata uncharacterized protein XP_954162.1 1341012 D 5874 CDS TA03110 3863509 complement(1341437..1343296) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.13 - score = 37.22; Signal peptide predicted for TA03110 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.928 between residues 23 and 24; Tash-like protein, putative 1343296 3863509 TA03110 Theileria annulata Tash-like protein, putative XP_954163.1 1341437 R 5874 CDS TA03115 3863510 complement(1343582..1346899) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.12 - score = 71.37; Signal peptide predicted for TA03115 by SignalP 2.0 HMM (Signal peptide probability 0.860, signal anchor probability 0.006) with cleavage site probability 0.615 between residues 26 and 27; Tash-like protein, putative 1346899 3863510 TA03115 Theileria annulata Tash-like protein, putative XP_954164.1 1343582 R 5874 CDS TA03120 3863511 complement(1347606..1348295) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.11 - score = 15.22; Signal peptide predicted for TA03120 by SignalP 2.0 HMM (Signal peptide probability 0.874, signal anchor probability 0.060) with cleavage site probability 0.793 between residues 23 and 24; Tash-like protein, putative 1348295 3863511 TA03120 Theileria annulata Tash-like protein, putative XP_954165.1 1347606 R 5874 CDS TA03125 3863512 complement(1348922..1350172) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.10 - score = 40.23; Tash1-like protein, putative 1350172 3863512 TA03125 Theileria annulata Tash1-like protein, putative XP_954166.1 1348922 R 5874 CDS TA03130 3863513 complement(1350792..1352081) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.9 - score = 36.44; SMART 1 transmembrane domain at aa 7-26; AT_hook (SM0384) at aa 158-170, E()=5.93e-01; 1 probable transmembrane helix predicted for TA03130 by TMHMM2.0 at aa 7-26; Tash(AT)-like protein, putative 1352081 3863513 TA03130 Theileria annulata Tash(AT)-like protein, putative XP_954167.1 1350792 R 5874 CDS TA03135 3863514 complement(1352701..1354377) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.8 - score = 46.46; SMART 2 AT_hook (SM00384) domains at aa 418-430, E()=1.40e+00; 436-448, E()=3.88e+00; Tash(AT)-like protein, putative 1354377 3863514 TA03135 Theileria annulata Tash(AT)-like protein, putative XP_954168.1 1352701 R 5874 CDS TA03140 3863515 complement(1354992..1356164) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.7 - score = 35.04; SMART 1 transmembrane domain at aa 7-26; 3 AT_hook (SM00384) domains at aa 139-151, E()=9.29e-01; 169-181, E()=1.82e-01; and 186-198, E()=1.42e-01; 1 probable transmembrane helix predicted for TA03140 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03140 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-or TashAT-like protein, putative 1356164 3863515 TA03140 Theileria annulata Tash1-or TashAT-like protein, putative XP_954169.1 1354992 R 5874 CDS TA03145 3863516 complement(1356648..1357784) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.6 - score = 29.20; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03145 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03145 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-like protein, putative 1357784 3863516 TA03145 Theileria annulata Tash1-like protein, putative XP_954170.1 1356648 R 5874 CDS TA03150 3863517 complement(1358162..1359373) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.5 - score = 28.77; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03150 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03150 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-like protein, putative 1359373 3863517 TA03150 Theileria annulata Tash1-like protein, putative XP_954171.1 1358162 R 5874 CDS TA03155 3863518 complement(1359971..1360876) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.4 - score = 26.95; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03155 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03155 by SignalP 2.0 HMM (Signal peptide probability 0.686, signal anchor probability 0.170) with cleavage site probability 0.623 between residues 23 and 24; Tash1-like protein, putative 1360876 3863518 TA03155 Theileria annulata Tash1-like protein, putative XP_954172.1 1359971 R 5874 CDS TA03160 3863519 complement(1361311..1362822) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.3 - score = 40.35; SMART 1 transmembrane domain at aa 9-28; 1 probable transmembrane helix predicted for TA03160 by TMHMM2.0 at aa 9-28; Signal peptide predicted for TA03160 by SignalP 2.0 HMM (Signal peptide probability 0.786, signal anchor probability 0.154) with cleavage site probability 0.761 between residues 25 and 26; Tash1-like protein, putative 1362822 3863519 TA03160 Theileria annulata Tash1-like protein, putative XP_954173.1 1361311 R 5874 CDS TA03165 3863520 complement(1363371..1364450) 1 1 NC_011129.2 Tap152h01.q1c.C.cand.2 - score = 31.89; SMART 1 transmembrane domain at aa 7-26; 1 probable transmembrane helix predicted for TA03165 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA03165 by SignalP 2.0 HMM (Signal peptide probability 0.907, signal anchor probability 0.005) with cleavage site probability 0.876 between residues 23 and 24; Tash1-like protein, putative 1364450 3863520 TA03165 Theileria annulata Tash1-like protein, putative XP_954174.1 1363371 R 5874 CDS TA20082 3864462 complement(1364948..1367932) 1 1 NC_011129.2 Signal peptide predicted for TA20082 by SignalP 2.0 HMM (Signal peptide probability 0.774, signal anchor probability 0.000) with cleavage site probability 0.399 between residues 24 and 25; Tashat3 protein 1367932 3864462 TA20082 Theileria annulata Tashat3 protein XP_954175.1 1364948 R 5874 CDS TA20083 3864463 complement(1368397..1369395) 1 1 NC_011129.2 Signal peptide predicted for TA20083 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.005) with cleavage site probability 0.837 between residues 23 and 24; schizont-host nuclear protein 1369395 3864463 TA20083 Theileria annulata schizont-host nuclear protein XP_954176.1 1368397 R 5874 CDS TA20085 3864464 complement(1369836..1371233) 1 1 NC_011129.2 Signal peptide predicted for TA20085 by SignalP 2.0 HMM (Signal peptide probability 0.751, signal anchor probability 0.000) with cleavage site probability 0.387 between residues 23 and 24; Tashat1 protein 1371233 3864464 TA20085 Theileria annulata Tashat1 protein XP_954177.1 1369836 R 5874 CDS TA20090 3863830 complement(1371701..1372699) 1 1 NC_011129.2 Signal peptide predicted for TA20090 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.005) with cleavage site probability 0.837 between residues 23 and 24; schizont-host nuclear protein 1372699 3863830 TA20090 Theileria annulata schizont-host nuclear protein XP_954178.1 1371701 R 5874 CDS TA20095 3863831 complement(1373140..1376631) 1 1 NC_011129.2 Tashat2 protein 1376631 3863831 TA20095 Theileria annulata Tashat2 protein XP_954179.1 1373140 R 5874 CDS TA20100 3863832 join(1377294..1377529,1377589..1377871,1377927..1377981,1378013..1378185,1378223..1378372,1378419..1378544,1378582..1378652,1378683..1378743,1378802..1378833,1378883..1378991) 1 1 NC_011129.2 ubiquitin-activating enzyme, putative 1378991 3863832 TA20100 Theileria annulata ubiquitin-activating enzyme, putative XP_954180.1 1377294 D 5874 CDS TA20105 3863833 complement(join(1379081..1379227,1379288..1379379,1379435..1379454,1379582..1379687,1379762..1379859,1379873..1379994,1380113..1381654)) 1 1 NC_011129.2 uncharacterized protein 1381654 3863833 TA20105 Theileria annulata uncharacterized protein XP_954181.1 1379081 R 5874 CDS TA20110 3863834 complement(join(1381792..1381854,1381934..1382746)) 1 1 NC_011129.2 uncharacterized protein 1382746 3863834 TA20110 Theileria annulata uncharacterized protein XP_954182.1 1381792 R 5874 CDS TA20115 3863835 complement(join(1382852..1383394,1383446..1383526,1383610..1383708,1383739..1383802,1383882..1383925)) 1 1 NC_011129.2 uncharacterized protein 1383925 3863835 TA20115 Theileria annulata uncharacterized protein XP_954183.1 1382852 R 5874 CDS TA20120 3863836 complement(join(1384847..1384889,1384964..1385080,1385343..1385440,1385470..1385529,1385674..1385862,1385939..1386001,1386041..1386139)) 1 1 NC_011129.2 uncharacterized protein 1386139 3863836 TA20120 Theileria annulata uncharacterized protein XP_954184.1 1384847 R 5874 CDS TA20125 3863837 complement(join(1386362..1386509,1386622..1386981,1387205..1387623,1387724..1388329,1388429..1389804,1389904..1390270)) 1 1 NC_011129.2 trehalose-6-phosphate synthase 1390270 3863837 TA20125 Theileria annulata trehalose-6-phosphate synthase XP_954185.1 1386362 R 5874 CDS TA20135 3863838 complement(join(1391541..1392260,1392328..1393721,1393772..1394024,1394110..1394229)) 1 1 NC_011129.2 uncharacterized protein 1394229 3863838 TA20135 Theileria annulata uncharacterized protein XP_954186.1 1391541 R 5874 CDS TA20140 3863839 join(1395151..1395334,1395436..1396037,1396117..1396395,1396425..1396494,1396529..1396662,1396695..1396784) 1 1 NC_011129.2 uncharacterized protein 1396784 3863839 TA20140 Theileria annulata uncharacterized protein XP_954187.1 1395151 D 5874 CDS TA20145 3863840 1397088..1398365 1 1 NC_011129.2 splicing factor, putative 1398365 3863840 TA20145 Theileria annulata splicing factor, putative XP_954188.1 1397088 D 5874 CDS TA20150 3863841 1398861..1400261 1 1 NC_011129.2 10 probable transmembrane helices predicted for TA20150 by TMHMM2.0 at aa 20-42, 62-79, 92-114, 149-171, 184-206, 250-272, 284-301, 316-335, 356-378 and 388-410; Signal peptide predicted for TA20150 by SignalP 2.0 HMM (Signal peptide probability 0.668, signal anchor probability 0.264) with cleavage site probability 0.471 between residues 37 and 38; uncharacterized protein 1400261 3863841 TA20150 Theileria annulata uncharacterized protein XP_954189.1 1398861 D 5874 CDS TA20155 3863842 join(1403122..1403271,1403341..1403375,1403446..1403500,1403521..1403606,1403655..1403708,1403867..1403903) 1 1 NC_011129.2 Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA20155 by TMHMM2.0 at aa 4-22; uncharacterized protein 1403903 3863842 TA20155 Theileria annulata uncharacterized protein XP_954190.1 1403122 D 5874 CDS TA20160 3863843 join(1404482..1404913,1404944..1405073,1405104..1405229,1405262..1406589) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20160 by TMHMM2.0 at aa 2-21; uncharacterized protein 1406589 3863843 TA20160 Theileria annulata uncharacterized protein XP_954191.1 1404482 D 5874 CDS TA20165 3863844 complement(1406738..1408285) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.127 - score = 28.53; calcium/calmodulin-dependent protein kinase subunit, putative 1408285 3863844 TA20165 Theileria annulata calcium/calmodulin-dependent protein kinase subunit, putative XP_954192.1 1406738 R 5874 CDS TA20170 3863845 complement(join(1409804..1410184,1410259..1410369,1410401..1410514,1410546..1410628,1410669..1410735)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.126 - score = 15.63; HAP-family transcription factor, putative 1410735 3863845 TA20170 Theileria annulata HAP-family transcription factor, putative XP_954193.1 1409804 R 5874 CDS TA20175 3863846 join(1411707..1412441,1412528..1413075,1413161..1413319,1413415..1413692,1413756..1415909,1415943..1416335,1416548..1416672,1416732..1416797,1416830..1417103,1417174..1417917,1417955..1418256) 1 1 NC_011129.2 DEAD-box helicase, putative 1418256 3863846 TA20175 Theileria annulata DEAD-box helicase, putative XP_954194.1 1411707 D 5874 CDS TA20180 3863847 complement(join(1418582..1419184,1419296..1419566,1419600..1420070,1420110..1420916,1420948..1421280,1421332..1421393)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.125 - score = 37.06; 1 probable transmembrane helix predicted for TA20180 by TMHMM2.0 at aa 808-830; uncharacterized protein 1421393 3863847 TA20180 Theileria annulata uncharacterized protein XP_954195.1 1418582 R 5874 CDS TA20185 3863848 complement(1422055..1423557) 1 1 NC_011129.2 4 probable transmembrane helices predicted for TA20185 by TMHMM2.0 at aa 172-194, 234-256, 340-362 and 395-417; uncharacterized protein 1423557 3863848 TA20185 Theileria annulata uncharacterized protein XP_954196.1 1422055 R 5874 CDS TA20190 3864229 1424035..1426038 1 1 NC_011129.2 uncharacterized protein 1426038 3864229 TA20190 Theileria annulata uncharacterized protein XP_954197.1 1424035 D 5874 CDS TA20195 3864230 complement(join(1426079..1426400,1426510..1426943,1427039..1428763)) 1 1 NC_011129.2 Alternative gene structure possible; uncharacterized protein 1428763 3864230 TA20195 Theileria annulata uncharacterized protein XP_954198.1 1426079 R 5874 CDS TA20200 3864231 complement(join(1428987..1429168,1429439..1429648,1429737..1430095,1430130..1430143)) 1 1 NC_011129.2 proteasome subunit alpha type 5-2, putative 1430143 3864231 TA20200 Theileria annulata proteasome subunit alpha type 5-2, putative XP_954199.1 1428987 R 5874 CDS TA20205 3864232 complement(join(1430283..1430406,1430463..1430558,1430646..1430873,1430919..1431047,1431080..1431240,1431278..1431394,1431425..1431578,1431628..1431702,1431732..1431857,1431889..1432004)) 1 1 NC_011129.2 schizont protein e 1432004 3864232 TA20205 Theileria annulata schizont protein e XP_954200.1 1430283 R 5874 CDS TA20210 3864233 join(1432313..1432346,1432380..1432458,1432495..1432607,1432704..1433398,1433443..1435128,1435224..1435691) 1 1 NC_011129.2 RNA-binding protein, putative 1435691 3864233 TA20210 Theileria annulata RNA-binding protein, putative XP_954201.1 1432313 D 5874 CDS TA20215 3864234 join(1436812..1436866,1436900..1440350,1440507..1440624) 1 1 NC_011129.2 Signal peptide predicted for TA20215 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.011) with cleavage site probability 0.760 between residues 26 and 27; uncharacterized protein 1440624 3864234 TA20215 Theileria annulata uncharacterized protein XP_954202.1 1436812 D 5874 CDS TA20220 3864235 join(1441477..1441509,1441605..1446511,1446635..1446794) 1 1 NC_011129.2 uncharacterized protein 1446794 3864235 TA20220 Theileria annulata uncharacterized protein XP_954203.1 1441477 D 5874 CDS TA20225 3864236 join(1446990..1447002,1447067..1447210,1447285..1447409) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20225 by TMHMM2.0 at aa 64-86; uncharacterized protein 1447409 3864236 TA20225 Theileria annulata uncharacterized protein XP_954204.1 1446990 D 5874 CDS TA20230 3864237 join(1448726..1450166,1450419..1451491,1451547..1451867) 1 1 NC_011129.2 uncharacterized protein 1451867 3864237 TA20230 Theileria annulata uncharacterized protein XP_954205.1 1448726 D 5874 CDS TA20235 3864238 1452311..1452829 1 1 NC_011129.2 uncharacterized protein 1452829 3864238 TA20235 Theileria annulata uncharacterized protein XP_954206.1 1452311 D 5874 CDS TA20240 3864239 join(1454660..1454837,1454889..1454983,1455056..1455142,1455332..1455360,1455457..1455508,1455712..1455778,1455842..1455888,1456037..1456153,1456233..1456251,1456423..1456687,1456772..1456799,1456933..1456961,1457102..1457280,1457319..1457452,1457551..1457569,1457909..1458027) 1 1 NC_011129.2 Contains a putative signal sequence; Contains 7 putative transmembrane domains; alternative gene structure possible; 8 probable transmembrane helices predicted for TA20240 by TMHMM2.0 at aa 10-32, 91-113, 123-142, 149-168, 202-224, 412-434, 444-462 and 464-486; integral membrane protein, putative 1458027 3864239 TA20240 Theileria annulata integral membrane protein, putative XP_954207.1 1454660 D 5874 CDS TA20245 3864240 complement(join(1458500..1458557,1458651..1458771,1458819..1458944,1459079..1459136)) 1 1 NC_011129.2 uncharacterized protein 1459136 3864240 TA20245 Theileria annulata uncharacterized protein XP_954208.1 1458500 R 5874 CDS TA20250 3864241 join(1459309..1459492,1459573..1459862,1459892..1459989,1460330..1460850,1460902..1461053,1461466..1461613,1461808..1461849,1462001..1462098,1462245..1462327,1462362..1462433,1462668..1462947,1463064..1463159,1463365..1463496,1463531..1463611) 1 1 NC_011129.2 uncharacterized protein 1463611 3864241 TA20250 Theileria annulata uncharacterized protein XP_954209.1 1459309 D 5874 CDS TA20255 3864242 complement(join(1463699..1464024,1464135..1464390)) 1 1 NC_011129.2 uncharacterized protein 1464390 3864242 TA20255 Theileria annulata uncharacterized protein XP_954210.1 1463699 R 5874 CDS TA20260 3864243 complement(1465373..1468348) 1 1 NC_011129.2 Signal peptide predicted for TA20260 by SignalP 2.0 HMM (Signal peptide probability 0.671, signal anchor probability 0.000) with cleavage site probability 0.565 between residues 16 and 17; uncharacterized protein 1468348 3864243 TA20260 Theileria annulata uncharacterized protein XP_954211.1 1465373 R 5874 CDS TA20265 3864244 complement(1469753..1470274) 1 1 NC_011129.2 60S ribosomal protein l3, putative 1470274 3864244 TA20265 Theileria annulata 60S ribosomal protein l3, putative XP_954212.1 1469753 R 5874 CDS TA20270 3864245 complement(1471020..1471631) 1 1 NC_011129.2 60S ribosomal protein l3, putative 1471631 3864245 TA20270 Theileria annulata 60S ribosomal protein l3, putative XP_954213.1 1471020 R 5874 CDS TA20275 3864246 1472416..1472892 1 1 NC_011129.2 uncharacterized protein 1472892 3864246 TA20275 Theileria annulata uncharacterized protein XP_954214.1 1472416 D 5874 CDS TA20280 3864247 join(1473424..1473634,1473686..1473850,1473887..1474066,1474103..1474483,1474526..1474977) 1 1 NC_011129.2 uncharacterized protein 1474977 3864247 TA20280 Theileria annulata uncharacterized protein XP_954215.1 1473424 D 5874 CDS TA20285 3864248 complement(join(1475079..1475249,1475328..1475528,1475806..1475960,1476019..1476036,1476309..1477982,1478043..1478162,1478373..1478414,1478772..1478967)) 1 1 NC_011129.2 uncharacterized protein 1478967 3864248 TA20285 Theileria annulata uncharacterized protein XP_954216.1 1475079 R 5874 CDS TA20290 3863656 join(1479085..1479129,1479168..1479305) 1 1 NC_011129.2 uncharacterized protein 1479305 3863656 TA20290 Theileria annulata uncharacterized protein XP_954217.1 1479085 D 5874 CDS TA20295 3863657 join(1480230..1480352,1480398..1480633,1480783..1480963) 1 1 NC_011129.2 uncharacterized protein 1480963 3863657 TA20295 Theileria annulata uncharacterized protein XP_954218.1 1480230 D 5874 CDS TA20300 3863658 complement(join(1481505..1482442,1482485..1482634,1482677..1482947)) 1 1 NC_011129.2 uncharacterized protein 1482947 3863658 TA20300 Theileria annulata uncharacterized protein XP_954219.1 1481505 R 5874 CDS TA20305 3863659 join(1484668..1484748,1485004..1486179) 1 1 NC_011129.2 transcription elongation factor, putative 1486179 3863659 TA20305 Theileria annulata transcription elongation factor, putative XP_954220.1 1484668 D 5874 CDS TA20310 3863660 join(1487624..1487644,1487679..1489131,1489449..1490434) 1 1 NC_011129.2 Signal peptide predicted for TA20310 by SignalP 2.0 HMM (Signal peptide probability 0.956, signal anchor probability 0.000) with cleavage site probability 0.650 between residues 20 and 21; uncharacterized protein 1490434 3863660 TA20310 Theileria annulata uncharacterized protein XP_954221.1 1487624 D 5874 CDS TA20315 3863661 1491401..1491985 1 1 NC_011129.2 Signal peptide predicted for TA20315 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.964 between residues 17 and 18; uncharacterized protein 1491985 3863661 TA20315 Theileria annulata uncharacterized protein XP_954222.1 1491401 D 5874 CDS TA20320 3863662 complement(1492470..1494095) 1 1 NC_011129.2 5 probable transmembrane helices predicted for TA20320 by TMHMM2.0 at aa 355-377, 390-412, 427-446, 458-480 and 506-528; integral membrane protein, putative 1494095 3863662 TA20320 Theileria annulata integral membrane protein, putative XP_954223.1 1492470 R 5874 CDS TA20325 3863663 complement(1494758..1496176) 1 1 NC_011129.2 6 probable transmembrane helices predicted for TA20325 by TMHMM2.0 at aa 10-29, 34-56, 69-88, 93-115, 120-142 and 359-381; Signal anchor predicted for TA20325 by SignalP 2.0 HMM (Signal peptide probability 0.194, signal anchor probability 0.794) with cleavage site probability 0.099 between residues 26 and 27; integral membrane protein, putative 1496176 3863663 TA20325 Theileria annulata integral membrane protein, putative XP_954224.1 1494758 R 5874 CDS TA20330 3863664 complement(1497309..1498919) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20330 by TMHMM2.0 at aa 513-535; choline kinase, putative 1498919 3863664 TA20330 Theileria annulata choline kinase, putative XP_954225.1 1497309 R 5874 CDS TA20335 3863665 complement(join(1500436..1501988,1502031..1502125,1502193..1502244,1502303..1502768)) 1 1 NC_011129.2 uncharacterized protein 1502768 3863665 TA20335 Theileria annulata uncharacterized protein XP_954226.1 1500436 R 5874 CDS TA20340 3863666 join(1502979..1503065,1503154..1503301,1503574..1503686,1503946..1504498,1504835..1505715,1506082..1506138,1506335..1506572,1506913..1507119,1507318..1507377,1507487..1507733,1508063..1508192,1508264..1508494,1508725..1508967,1509210..1509497) 1 1 NC_011129.2 ATP-dependent helicase, putative 1509497 3863666 TA20340 Theileria annulata ATP-dependent helicase, putative XP_954227.1 1502979 D 5874 CDS TA20345 3863667 complement(join(1509684..1509763,1509876..1510113,1510183..1510325,1510348..1510502,1510535..1510598,1510797..1510809)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20345 by TMHMM2.0 at aa 83-105; putative transcription initiation protein spt4-like, putatve 1510809 3863667 TA20345 Theileria annulata putative transcription initiation protein spt4-like, putatve XP_954228.1 1509684 R 5874 CDS TA20350 3863668 1510972..1512354 1 1 NC_011129.2 4 probable transmembrane helices predicted for TA20350 by TMHMM2.0 at aa 302-324, 384-406, 416-435 and 442-459; uncharacterized protein 1512354 3863668 TA20350 Theileria annulata uncharacterized protein XP_954229.1 1510972 D 5874 CDS TA20355 3863669 join(1512443..1512578,1512671..1512903,1513088..1513156,1513371..1513739) 1 1 NC_011129.2 uncharacterized protein 1513739 3863669 TA20355 Theileria annulata uncharacterized protein XP_954230.1 1512443 D 5874 CDS TA20360 3863670 complement(join(1514463..1517861,1517895..1518223,1518269..1518368)) 1 1 NC_011129.2 Phosphoinositide 3-kinase-like protein, putative 1518368 3863670 TA20360 Theileria annulata Phosphoinositide 3-kinase-like protein, putative XP_954231.1 1514463 R 5874 CDS TA20365 3863671 complement(join(1518657..1518940,1518983..1519364)) 1 1 NC_011129.2 uncharacterized protein 1519364 3863671 TA20365 Theileria annulata uncharacterized protein XP_954232.1 1518657 R 5874 CDS TA20370 3863672 join(1519482..1519944,1519990..1520696) 1 1 NC_011129.2 uncharacterized protein 1520696 3863672 TA20370 Theileria annulata uncharacterized protein XP_954233.1 1519482 D 5874 CDS TA20375 3863673 1521088..1521957 1 1 NC_011129.2 uncharacterized protein 1521957 3863673 TA20375 Theileria annulata uncharacterized protein XP_954234.1 1521088 D 5874 CDS TA20380 3863674 join(1522517..1522574,1522643..1522743,1522830..1523429) 1 1 NC_011129.2 7 probable transmembrane helices predicted for TA20380 by TMHMM2.0 at aa 45-64, 71-93, 103-125, 132-154, 164-186, 193-215 and 228-250; transmembrane protein 1523429 3863674 TA20380 Theileria annulata transmembrane protein XP_954235.1 1522517 D 5874 CDS TA20385 3863488 join(1523672..1523819,1523869..1524285,1524440..1524708) 1 1 NC_011129.2 7 probable transmembrane helices predicted for TA20385 by TMHMM2.0 at aa 73-95, 105-126, 133-152, 162-179, 191-213, 218-240 and 253-275; transmembrane protein 1524708 3863488 TA20385 Theileria annulata transmembrane protein XP_954236.1 1523672 D 5874 CDS TA20390 3863489 complement(join(1524820..1525910,1525956..1527918,1528043..1528051)) 1 1 NC_011129.2 uncharacterized protein 1528051 3863489 TA20390 Theileria annulata uncharacterized protein XP_954237.1 1524820 R 5874 CDS TA20395 3863490 join(1528233..1528590,1528696..1528794,1528825..1529171) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20395 by TMHMM2.0 at aa 202-224; uncharacterized protein 1529171 3863490 TA20395 Theileria annulata uncharacterized protein XP_954238.1 1528233 D 5874 CDS TA20400 3863491 complement(join(1529277..1529847,1529906..1530219)) 1 1 NC_011129.2 uncharacterized protein 1530219 3863491 TA20400 Theileria annulata uncharacterized protein XP_954239.1 1529277 R 5874 CDS TA20405 3863492 join(1531085..1533244,1533324..1533641) 1 1 NC_011129.2 elongation factor 2, putative 1533641 3863492 TA20405 Theileria annulata elongation factor 2, putative XP_954240.1 1531085 D 5874 CDS TA20410 3863493 join(1533832..1533955,1534075..1534173,1534219..1534504,1534563..1534719) 1 1 NC_011129.2 uncharacterized protein 1534719 3863493 TA20410 Theileria annulata uncharacterized protein XP_954241.1 1533832 D 5874 CDS TA20415 3863494 join(1534756..1534918,1535002..1535631,1535670..1536244,1536336..1537754) 1 1 NC_011129.2 sir2-like histone deacetylase, putative 1537754 3863494 TA20415 Theileria annulata sir2-like histone deacetylase, putative XP_954242.1 1534756 D 5874 CDS TA20420 3863495 complement(join(1537869..1538144,1538205..1538585)) 1 1 NC_011129.2 very weak SMART hit (4.19e+00) to t-SNARE; 1 probable transmembrane helix predicted for TA20420 by TMHMM2.0 at aa 191-213; uncharacterized protein 1538585 3863495 TA20420 Theileria annulata uncharacterized protein XP_954243.1 1537869 R 5874 CDS TA20425 3863496 join(1539077..1539745,1539799..1539912) 1 1 NC_011129.2 uncharacterized protein 1539912 3863496 TA20425 Theileria annulata uncharacterized protein XP_954244.1 1539077 D 5874 CDS TA20430 3863497 complement(join(1539972..1540363,1540426..1540485,1540639..1540700,1540820..1540901,1540933..1541023)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20430 by TMHMM2.0 at aa 31-50; Signal anchor predicted for TA20430 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.777) with cleavage site probability 0.015 between residues 48 and 49; uncharacterized protein 1541023 3863497 TA20430 Theileria annulata uncharacterized protein XP_954245.1 1539972 R 5874 CDS TA20435 3863498 complement(join(1541335..1541715,1541794..1541960,1542059..1542173)) 1 1 NC_011129.2 Signal peptide predicted for TA20435 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.002) with cleavage site probability 0.787 between residues 22 and 23; uncharacterized protein 1542173 3863498 TA20435 Theileria annulata uncharacterized protein XP_954246.1 1541335 R 5874 CDS TA20440 3863499 join(1542891..1542938,1542971..1543030,1543118..1543750) 1 1 NC_011129.2 Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA20440 by TMHMM2.0 at aa 4-26, 143-165 and 223-240; Signal peptide predicted for TA20440 by SignalP 2.0 HMM (Signal peptide probability 0.957, signal anchor probability 0.001) with cleavage site probability 0.615 between residues 22 and 23; uncharacterized protein 1543750 3863499 TA20440 Theileria annulata uncharacterized protein XP_954247.1 1542891 D 5874 CDS TA20445 3863500 complement(join(1543844..1544905,1544940..1545158,1545257..1545385,1545469..1545558,1545589..1545676,1545707..1545796,1545894..1546045,1546075..1546169,1546230..1546601,1546670..1547002,1547082..1547425,1547486..1547570,1547722..1547767)) 1 1 NC_011129.2 long-chain-fatty-acid--coa ligase 5, putative 1547767 3863500 TA20445 Theileria annulata long-chain-fatty-acid--coa ligase 5, putative XP_954248.1 1543844 R 5874 CDS TA20450 3863501 1548380..1548790 1 1 NC_011129.2 uncharacterized protein 1548790 3863501 TA20450 Theileria annulata uncharacterized protein XP_954249.1 1548380 D 5874 CDS TA20455 3863502 join(1549092..1549750,1549785..1549918,1550019..1550179,1550251..1550436) 1 1 NC_011129.2 Contains putative signal peptide; uncharacterized protein 1550436 3863502 TA20455 Theileria annulata uncharacterized protein XP_954250.1 1549092 D 5874 CDS TA20460 3863503 complement(join(1550552..1550635,1550665..1550867,1550948..1551155,1551230..1551636,1551703..1551857,1551960..1552195,1552226..1552349,1552405..1552514,1552545..1552637,1552720..1552833)) 1 1 NC_011129.2 tryptophanyl-trna synthetase, putative 1552833 3863503 TA20460 Theileria annulata tryptophanyl-trna synthetase, putative XP_954251.1 1550552 R 5874 CDS TA20465 3863504 join(1553161..1553302,1553411..1553596,1553631..1553800) 1 1 NC_011129.2 uncharacterized protein 1553800 3863504 TA20465 Theileria annulata uncharacterized protein XP_954252.1 1553161 D 5874 CDS TA20470 3863505 complement(join(1553937..1554062,1554092..1556251)) 1 1 NC_011129.2 Significant similarity to 1-deoxy-D-xylulose 5-phosphate synthases of several prokaryotic origin; 1-deoxy-D-xylulose 5-phosphate synthase, putative 1556251 3863505 TA20470 Theileria annulata 1-deoxy-D-xylulose 5-phosphate synthase, putative XP_954253.1 1553937 R 5874 CDS TA20475 3863506 join(1556540..1556982,1557015..1557108,1557153..1557272,1557321..1557472,1557503..1557563,1557613..1557704,1557747..1557813,1557843..1558083,1558116..1558552,1558590..1558659,1558688..1558845,1558879..1559075,1559105..1559189,1559222..1559290,1559353..1559418) 1 1 NC_011129.2 Shows significant Pfam hit (2.7e-08) to Peptidase_M3 family domain; endopeptidase, putative 1559418 3863506 TA20475 Theileria annulata endopeptidase, putative XP_954254.1 1556540 D 5874 CDS TA20480 3863507 join(1559585..1560151,1560195..1560545,1560625..1560930,1560990..1561112,1561177..1561356) 1 1 NC_011129.2 Contains several Ankyrin repeat elements; Ankyrin repeat protein, putative 1561356 3863507 TA20480 Theileria annulata Ankyrin repeat protein, putative XP_954255.1 1559585 D 5874 CDS TA20485 3864093 join(1561680..1561889,1561975..1562220,1562294..1562452) 1 1 NC_011129.2 myosin a tail domain interacting protein mtip, putative 1562452 3864093 TA20485 Theileria annulata myosin a tail domain interacting protein mtip, putative XP_954256.1 1561680 D 5874 CDS TA20490 3864094 join(1562526..1562722,1562768..1562878,1562939..1563164) 1 1 NC_011129.2 4 probable transmembrane helices predicted for TA20490 by TMHMM2.0 at aa 30-49, 61-83, 98-120 and 141-163; integral membrane protein, putative 1563164 3864094 TA20490 Theileria annulata integral membrane protein, putative XP_954257.1 1562526 D 5874 CDS TA20495 3864095 complement(join(1563210..1563634,1563700..1563848,1563890..1568496)) 1 1 NC_011129.2 Shows weak similarity to PHD (2.56e-02), RING finger (7.87e-01) and SET (9.3e-02) SMART domains; zinc finger protein with SET domain, putative 1568496 3864095 TA20495 Theileria annulata zinc finger protein with SET domain, putative XP_954258.1 1563210 R 5874 CDS TA20500 3864096 complement(join(1569755..1569901,1569973..1570035,1570140..1570331,1570361..1570507,1570548..1570622,1570682..1570723)) 1 1 NC_011129.2 uncharacterized protein 1570723 3864096 TA20500 Theileria annulata uncharacterized protein XP_954259.1 1569755 R 5874 CDS TA20505 3864097 join(1571187..1571240,1571330..1571831,1571895..1571980,1572056..1572427,1572507..1572736,1572807..1572897,1572940..1573320) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20505 by TMHMM2.0 at aa 520-542; Signal peptide predicted for TA20505 by SignalP 2.0 HMM (Signal peptide probability 0.675, signal anchor probability 0.000) with cleavage site probability 0.597 between residues 19 and 20; uncharacterized protein 1573320 3864097 TA20505 Theileria annulata uncharacterized protein XP_954260.1 1571187 D 5874 CDS TA20510 3864098 complement(join(1573382..1573788,1573892..1573943)) 1 1 NC_011129.2 ubiquitin-conjugating enzyme e2, putative 1573943 3864098 TA20510 Theileria annulata ubiquitin-conjugating enzyme e2, putative XP_954261.1 1573382 R 5874 CDS TA20515 3864099 join(1574261..1574969,1575068..1575946,1576088..1576361,1576475..1577672) 1 1 NC_011129.2 DNA replication licensing factor Mcm2, putative 1577672 3864099 TA20515 Theileria annulata DNA replication licensing factor Mcm2, putative XP_954262.1 1574261 D 5874 CDS TA20520 3864100 complement(join(1577734..1577982,1578035..1578195,1578229..1578309,1578371..1578527)) 1 1 NC_011129.2 2 probable transmembrane helices predicted for TA20520 by TMHMM2.0 at aa 4-23 and 183-205; Signal peptide predicted for TA20520 by SignalP 2.0 HMM (Signal peptide probability 0.988, signal anchor probability 0.000) with cleavage site probability 0.574 between residues 19 and 20; uncharacterized protein 1578527 3864100 TA20520 Theileria annulata uncharacterized protein XP_954263.1 1577734 R 5874 CDS TA20525 3864101 1578760..1579626 1 1 NC_011129.2 ribosomal protein s12, putative 1579626 3864101 TA20525 Theileria annulata ribosomal protein s12, putative XP_954264.1 1578760 D 5874 CDS TA20530 3864102 complement(1579714..1580178) 1 1 NC_011129.2 uncharacterized protein 1580178 3864102 TA20530 Theileria annulata uncharacterized protein XP_954265.1 1579714 R 5874 CDS TA20535 3864103 complement(join(1580417..1580564,1580754..1580827,1580947..1581813,1581914..1582048,1582110..1582211,1582242..1582510,1582584..1582890,1582943..1583021,1583058..1583212)) 1 1 NC_011129.2 Moderate Pfam hit (7.4e-05) to TPR domain; peptidylprolyl isomerase-like protein, putative 1583212 3864103 TA20535 Theileria annulata peptidylprolyl isomerase-like protein, putative XP_954266.1 1580417 R 5874 CDS TA20540 3864104 join(1583415..1584072,1584104..1584238,1584275..1584347,1584380..1584457,1584518..1584645,1584686..1584981) 1 1 NC_011129.2 riboflavin kinase / fad synthase family protein, putative 1584981 3864104 TA20540 Theileria annulata riboflavin kinase / fad synthase family protein, putative XP_954267.1 1583415 D 5874 CDS TA20545 3864105 complement(join(1585032..1585252,1585329..1585563)) 1 1 NC_011129.2 ribosomal protein s15, putative 1585563 3864105 TA20545 Theileria annulata ribosomal protein s15, putative XP_954268.1 1585032 R 5874 CDS TA20550 3864106 complement(join(1585772..1586124,1586187..1586274,1586325..1586432)) 1 1 NC_011129.2 uncharacterized protein 1586432 3864106 TA20550 Theileria annulata uncharacterized protein XP_954269.1 1585772 R 5874 CDS TA20555 3864107 complement(join(1587198..1589435,1589560..1589694,1589762..1589860)) 1 1 NC_011129.2 myosin a, putative 1589860 3864107 TA20555 Theileria annulata myosin a, putative XP_954270.1 1587198 R 5874 CDS TA20560 3864108 join(1590974..1591244,1591425..1591889,1591956..1592011,1592088..1592200,1592464..1592554) 1 1 NC_011129.2 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA20560 by SignalP 2.0 HMM (Signal peptide probability 0.632, signal anchor probability 0.000) with cleavage site probability 0.426 between residues 18 and 19; uncharacterized protein 1592554 3864108 TA20560 Theileria annulata uncharacterized protein XP_954271.1 1590974 D 5874 CDS TA20565 3864109 join(1592612..1592719,1592760..1592797,1592840..1592940,1593004..1593081,1593155..1593306) 1 1 NC_011129.2 uncharacterized protein 1593306 3864109 TA20565 Theileria annulata uncharacterized protein XP_954272.1 1592612 D 5874 CDS TA20570 3864110 1593354..1593728 1 1 NC_011129.2 uncharacterized protein 1593728 3864110 TA20570 Theileria annulata uncharacterized protein XP_954273.1 1593354 D 5874 CDS TA20575 3864111 complement(1593981..1596062) 1 1 NC_011129.2 Weak Pfam hit (8.7e-03) to endonuclease/exonuclease/phosphatase family; product call is based on the Pfam match; enzyme, putative 1596062 3864111 TA20575 Theileria annulata enzyme, putative XP_954274.1 1593981 R 5874 CDS TA20580 3864347 1597693..1599240 1 1 NC_011129.2 ribonucleoprotein, putative 1599240 3864347 TA20580 Theileria annulata ribonucleoprotein, putative XP_954275.1 1597693 D 5874 CDS TA20585 3864348 complement(join(1599390..1599626,1599691..1599792,1599879..1600055,1600114..1600222,1600379..1600536,1600567..1600638,1600687..1600786,1600867..1601016,1601131..1601440,1601507..1602403,1602438..1602827,1602889..1603054)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20585 by TMHMM2.0 at aa 163-185; exosome complex exonuclease rrp44, putative 1603054 3864348 TA20585 Theileria annulata exosome complex exonuclease rrp44, putative XP_954276.1 1599390 R 5874 CDS TA20590 3864349 join(1603699..1603839,1603912..1604032,1604121..1604474,1604554..1605680) 1 1 NC_011129.2 phosphoenolpyruvate carboxykinase, putative 1605680 3864349 TA20590 Theileria annulata phosphoenolpyruvate carboxykinase, putative XP_954277.1 1603699 D 5874 CDS TA20595 3864350 complement(join(1605861..1606225,1606324..1608115)) 1 1 NC_011129.2 uncharacterized protein 1608115 3864350 TA20595 Theileria annulata uncharacterized protein XP_954278.1 1605861 R 5874 CDS TA20600 3864351 join(1608756..1609833,1610031..1610581) 1 1 NC_011129.2 Not conserved protein length-wise in the N-terminal end; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA20600 by TMHMM2.0 at aa 5-27 and 34-56; Signal anchor predicted for TA20600 by SignalP 2.0 HMM (Signal peptide probability 0.015, signal anchor probability 0.788) with cleavage site probability 0.004 between residues 25 and 26; uncharacterized protein 1610581 3864351 TA20600 Theileria annulata uncharacterized protein XP_954279.1 1608756 D 5874 CDS TA20605 3864352 complement(join(1610691..1610927,1611004..1612309,1612354..1612382)) 1 1 NC_011129.2 udp-N-acetylglucosamine pyrophosphorylase, putative 1612382 3864352 TA20605 Theileria annulata udp-N-acetylglucosamine pyrophosphorylase, putative XP_954280.1 1610691 R 5874 CDS TA20610 3864353 complement(join(1612814..1613693,1613759..1614195,1614359..1614730)) 1 1 NC_011129.2 protein with kelch domain 1614730 3864353 TA20610 Theileria annulata protein with kelch domain XP_954281.1 1612814 R 5874 CDS TA20615 3864354 complement(1614983..1616455) 1 1 NC_011129.2 Contains putative signal peptide; 1 probable transmembrane helix predicted for TA20615 by TMHMM2.0 at aa 13-35; Signal peptide predicted for TA20615 by SignalP 2.0 HMM (Signal peptide probability 0.779, signal anchor probability 0.216) with cleavage site probability 0.151 between residues 39 and 40; GPI-Anchor Signal predicted for TA20615 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1616455 3864354 TA20615 Theileria annulata uncharacterized protein XP_954282.1 1614983 R 5874 CDS TA20620 3864355 complement(join(1616534..1616914,1616945..1617657,1617719..1623292,1623405..1629101,1629165..1629540,1629612..1631918,1631952..1632162,1632233..1632411)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20620 by TMHMM2.0 at aa 5113-5135; uncharacterized protein 1632411 3864355 TA20620 Theileria annulata uncharacterized protein XP_954283.1 1616534 R 5874 CDS TA20625 3864356 join(1632970..1633022,1633096..1633125,1633290..1634841) 1 1 NC_011129.2 u4/u6 small nuclear ribonucleoprotein, putative 1634841 3864356 TA20625 Theileria annulata u4/u6 small nuclear ribonucleoprotein, putative XP_954284.1 1632970 D 5874 CDS TA20630 3864357 complement(join(1634910..1636316,1636347..1636686,1636723..1637294,1637328..1637945)) 1 1 NC_011129.2 20 probable transmembrane helices predicted for TA20630 by TMHMM2.0 at aa 107-129, 133-155, 162-184, 218-240, 293-315, 325-347, 381-398, 402-424, 444-466, 495-517, 524-546, 556-574, 581-603, 618-640, 652-674, 704-726, 728-750, 765-787, 800-822 and 946-968; integral membrane protein, putative 1637945 3864357 TA20630 Theileria annulata integral membrane protein, putative XP_954285.1 1634910 R 5874 CDS TA20635 3864358 join(1638315..1638960,1639003..1639359,1639390..1639474,1639504..1639725,1639755..1639920,1639952..1640494) 1 1 NC_011129.2 glycine cleavage complex t-protein, putative 1640494 3864358 TA20635 Theileria annulata glycine cleavage complex t-protein, putative XP_954286.1 1638315 D 5874 CDS TA20640 3864359 1640776..1643895 1 1 NC_011129.2 Signal peptide predicted for TA20640 by SignalP 2.0 HMM (Signal peptide probability 0.621, signal anchor probability 0.018) with cleavage site probability 0.310 between residues 18 and 19; HSP70 chaperone, putative 1643895 3864359 TA20640 Theileria annulata HSP70 chaperone, putative XP_954287.1 1640776 D 5874 CDS TA20645 3864360 complement(1644071..1646422) 1 1 NC_011129.2 FHA domain protein, putative 1646422 3864360 TA20645 Theileria annulata FHA domain protein, putative XP_954288.1 1644071 R 5874 CDS TA20650 3864361 join(1648701..1649507,1649579..1649767,1649807..1649944) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20650 by TMHMM2.0 at aa 9-31; aspartate transcarbamoylase, putative 1649944 3864361 TA20650 Theileria annulata aspartate transcarbamoylase, putative XP_954289.1 1648701 D 5874 CDS TA20655 3864362 complement(join(1650068..1650283,1650312..1650337,1650377..1650648,1650679..1650695)) 1 1 NC_011129.2 protein, thioredoxin-like 1650695 3864362 TA20655 Theileria annulata protein, thioredoxin-like XP_954290.1 1650068 R 5874 CDS TA20660 3864363 join(1651055..1652996,1653054..1653423,1653454..1653571,1653679..1653771) 1 1 NC_011129.2 uncharacterized protein 1653771 3864363 TA20660 Theileria annulata uncharacterized protein XP_954291.1 1651055 D 5874 CDS TA20665 3864364 join(1653810..1653885,1653920..1654199,1654230..1654332,1654364..1654465,1654495..1654779) 1 1 NC_011129.2 uncharacterized protein 1654779 3864364 TA20665 Theileria annulata uncharacterized protein XP_954292.1 1653810 D 5874 CDS TA20670 3864365 join(1654948..1655110,1655221..1655291,1655322..1655477,1655507..1655641) 1 1 NC_011129.2 uncharacterized protein 1655641 3864365 TA20670 Theileria annulata uncharacterized protein XP_954293.1 1654948 D 5874 CDS TA20675 3864366 complement(join(1655726..1655935,1656116..1656307,1656346..1656588)) 1 1 NC_011129.2 Signal peptide predicted for TA20675 by SignalP 2.0 HMM (Signal peptide probability 0.874, signal anchor probability 0.001) with cleavage site probability 0.846 between residues 19 and 20; thioredoxin-like protein, putative 1656588 3864366 TA20675 Theileria annulata thioredoxin-like protein, putative XP_954294.1 1655726 R 5874 CDS TA20680 3863945 complement(join(1656786..1657234,1657291..1657455,1657497..1658418)) 1 1 NC_011129.2 3 probable transmembrane helices predicted for TA20680 by TMHMM2.0 at aa 394-416, 423-445 and 460-478; integral membrane protein, rhomboid family 1658418 3863945 TA20680 Theileria annulata integral membrane protein, rhomboid family XP_954295.1 1656786 R 5874 CDS TA20685 3863946 complement(join(1658762..1658794,1658828..1658923,1658958..1659110)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20685 by TMHMM2.0 at aa 51-73; uncharacterized protein 1659110 3863946 TA20685 Theileria annulata uncharacterized protein XP_954296.1 1658762 R 5874 CDS TA20690 3863947 complement(join(1659243..1659366,1659400..1659651,1659684..1659874,1659908..1659998,1660035..1660169,1660223..1660290,1660320..1660411,1660444..1661223,1661253..1661550)) 1 1 NC_011129.2 Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA20690 by TMHMM2.0 at aa 12-31; uncharacterized protein 1661550 3863947 TA20690 Theileria annulata uncharacterized protein XP_954297.1 1659243 R 5874 CDS TA20695 3863948 1662177..1663376 1 1 NC_011129.2 uncharacterized protein 1663376 3863948 TA20695 Theileria annulata uncharacterized protein XP_954298.1 1662177 D 5874 CDS TA20700 3863949 join(1663831..1671226,1671439..1671728) 1 1 NC_011129.2 uncharacterized protein 1671728 3863949 TA20700 Theileria annulata uncharacterized protein XP_954299.1 1663831 D 5874 CDS TA20705 3863950 1671897..1673795 1 1 NC_011129.2 histone acetyltransferase gcn5-related, putative 1673795 3863950 TA20705 Theileria annulata histone acetyltransferase gcn5-related, putative XP_954300.1 1671897 D 5874 CDS TA20710 3863951 complement(join(1674029..1674424,1674523..1674894)) 1 1 NC_011129.2 Conserved C-terminus; uncharacterized protein 1674894 3863951 TA20710 Theileria annulata uncharacterized protein XP_954301.1 1674029 R 5874 CDS TA20715 3863952 1675144..1677534 1 1 NC_011129.2 glycyl-tRNA synthetase 1677534 3863952 TA20715 Theileria annulata glycyl-tRNA synthetase XP_954302.1 1675144 D 5874 CDS TA20720 3863953 complement(join(1677793..1677863,1677893..1677991,1678029..1678101,1678193..1678543)) 1 1 NC_011129.2 uncharacterized protein 1678543 3863953 TA20720 Theileria annulata uncharacterized protein XP_954303.1 1677793 R 5874 CDS TA20725 3863954 join(1679089..1679223,1679281..1679570,1679669..1679912,1680026..1683269,1683357..1683757) 1 1 NC_011129.2 uncharacterized protein 1683757 3863954 TA20725 Theileria annulata uncharacterized protein XP_954304.1 1679089 D 5874 CDS TA20730 3863955 join(1684045..1684290,1684334..1684477) 1 1 NC_011129.2 uncharacterized protein 1684477 3863955 TA20730 Theileria annulata uncharacterized protein XP_954305.1 1684045 D 5874 CDS TA20735 3863956 join(1684599..1684809,1684895..1686015,1686091..1686206,1686259..1686373,1686431..1686533,1686565..1686710,1686847..1686990) 1 1 NC_011129.2 DNA mismatch repair protein msh2, putative 1686990 3863956 TA20735 Theileria annulata DNA mismatch repair protein msh2, putative XP_954306.1 1684599 D 5874 CDS TA20740 3863957 complement(join(1695726..1697203,1697260..1697608)) 1 1 NC_011129.2 uncharacterized protein 1697608 3863957 TA20740 Theileria annulata uncharacterized protein XP_954307.1 1695726 R 5874 CDS TA20745 3863958 join(1697767..1697853,1697911..1698196,1698225..1698454) 1 1 NC_011129.2 small overlap at the 3' end with gene TA20750; uncharacterized protein 1698454 3863958 TA20745 Theileria annulata uncharacterized protein XP_954308.1 1697767 D 5874 CDS TA20750 3863959 complement(join(1698438..1698736,1698852..1698894,1698926..1699010,1699082..1699292,1699343..1699448,1699480..1699617,1699670..1699773,1699807..1699834)) 1 1 NC_011129.2 small overlap at the 3' end with gene TA20745; trna delta (2)-isopentenylpyrophosphate transferase, putative 1699834 3863959 TA20750 Theileria annulata trna delta (2)-isopentenylpyrophosphate transferase, putative XP_954309.1 1698438 R 5874 CDS TA20755 3863960 complement(join(1699938..1700093,1700126..1700167,1700197..1700260,1700379..1700530,1700560..1700612,1700645..1700738,1700771..1700815,1700846..1700909,1700941..1701017,1701054..1701134,1701167..1701229,1701282..1701365,1701414..1701446)) 1 1 NC_011129.2 uncharacterized protein 1701446 3863960 TA20755 Theileria annulata uncharacterized protein XP_954310.1 1699938 R 5874 CDS TA20760 3863961 complement(1701970..1702617) 1 1 NC_011129.2 uncharacterized protein 1702617 3863961 TA20760 Theileria annulata uncharacterized protein XP_954311.1 1701970 R 5874 CDS TA20765 3863962 join(1702800..1703138,1703197..1703391) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20765 by TMHMM2.0 at aa 13-30; uncharacterized protein 1703391 3863962 TA20765 Theileria annulata uncharacterized protein XP_954312.1 1702800 D 5874 CDS TA20770 3863963 join(1703509..1703608,1703674..1703930,1703964..1704079,1704109..1704282,1704313..1710217,1710268..1711455) 1 1 NC_011129.2 uncharacterized protein 1711455 3863963 TA20770 Theileria annulata uncharacterized protein XP_954313.1 1703509 D 5874 CDS TA20775 3863568 complement(join(1711587..1711686,1711722..1711930,1711964..1712192,1712232..1712445,1712478..1712613,1712653..1712804,1712842..1713037)) 1 1 NC_011129.2 dihydrofolate synthase/folylpolyglutamate synthase, putative 1713037 3863568 TA20775 Theileria annulata dihydrofolate synthase/folylpolyglutamate synthase, putative XP_954314.1 1711587 R 5874 CDS TA20780 3863569 complement(join(1713158..1713517,1713548..1713621,1713650..1713793,1713823..1714269,1714306..1714382,1714416..1714459)) 1 1 NC_011129.2 Conserved amino acids present but the matches are not throughout the length of the matching proteins; uncharacterized protein 1714459 3863569 TA20780 Theileria annulata uncharacterized protein XP_954315.1 1713158 R 5874 CDS TA20781 3863570 1714883..1719172 1 1 NC_011129.2 Signal peptide predicted for TA20781 by SignalP 2.0 HMM (Signal peptide probability 0.932, signal anchor probability 0.000) with cleavage site probability 0.797 between residues 21 and 22; GPI-Anchor Signal predicted for TA20781 by DGPI v2.04, no cleavage site predicted; cysteine repeat modular protein 1719172 3863570 TA20781 Theileria annulata cysteine repeat modular protein XP_954316.1 1714883 D 5874 CDS TA20782 3863571 join(1719243..1719774,1719815..1723344) 1 1 NC_011129.2 8 probable transmembrane helices predicted for TA20782 by TMHMM2.0 at aa 580-597, 609-631, 701-723, 775-797, 822-844, 902-919, 953-975 and 1070-1087; cysteine repeat modular protein 1723344 3863571 TA20782 Theileria annulata cysteine repeat modular protein XP_954317.1 1719243 D 5874 CDS TA20783 3863572 join(1726361..1726991,1727027..1733561,1733693..1734434) 1 1 NC_011129.2 8 probable transmembrane helices predicted for TA20783 by TMHMM2.0 at aa 2038-2060, 2067-2089, 2137-2159, 2187-2209, 2243-2265, 2291-2310, 2320-2342 and 2354-2376; cysteine repeat modular protein 1734434 3863572 TA20783 Theileria annulata cysteine repeat modular protein XP_954318.1 1726361 D 5874 CDS TA20790 3863573 1735524..1737143 1 1 NC_011129.2 Signal peptide predicted for TA20790 by SignalP 2.0 HMM (Signal peptide probability 0.660, signal anchor probability 0.000) with cleavage site probability 0.462 between residues 17 and 18; uncharacterized protein 1737143 3863573 TA20790 Theileria annulata uncharacterized protein XP_954319.1 1735524 D 5874 CDS TA20795 3863574 complement(join(1737190..1738783,1738863..1739092,1739186..1739784,1739853..1740345)) 1 1 NC_011129.2 uncharacterized protein 1740345 3863574 TA20795 Theileria annulata uncharacterized protein XP_954320.1 1737190 R 5874 CDS TA20800 3863575 join(1742511..1743723,1743867..1744256,1744319..1744705,1744759..1747028,1747203..1747667) 1 1 NC_011129.2 uncharacterized protein 1747667 3863575 TA20800 Theileria annulata uncharacterized protein XP_954321.1 1742511 D 5874 CDS TA20805 3863576 join(1747712..1748017,1748115..1749482) 1 1 NC_011129.2 uncharacterized protein 1749482 3863576 TA20805 Theileria annulata uncharacterized protein XP_954322.1 1747712 D 5874 CDS TA20810 3863577 complement(join(1749560..1749622,1749653..1749820,1749953..1750016,1750047..1750240)) 1 1 NC_011129.2 protein CGI-126, putative 1750240 3863577 TA20810 Theileria annulata protein CGI-126, putative XP_954323.1 1749560 R 5874 CDS TA20815 3863578 complement(join(1750530..1750817,1750969..1751495,1751642..1752032)) 1 1 NC_011129.2 Similarity to tata-box binding proteins of several bacteria & 2 malaria species; tata box binding protein, putative 1752032 3863578 TA20815 Theileria annulata tata box binding protein, putative XP_954324.1 1750530 R 5874 CDS TA20820 3863579 complement(join(1752708..1752848,1752878..1753048,1753185..1753263,1753417..1753516,1753576..1753669)) 1 1 NC_011129.2 peptide chain release factor 1, mitochondrial precursor, putative 1753669 3863579 TA20820 Theileria annulata peptide chain release factor 1, mitochondrial precursor, putative XP_954325.1 1752708 R 5874 CDS TA20825 3863580 complement(join(1753953..1755512,1755603..1758284)) 1 1 NC_011129.2 Weak hit to serine-threonine protein kinase domain; serine-threonine protein kinase, putative 1758284 3863580 TA20825 Theileria annulata serine-threonine protein kinase, putative XP_954326.1 1753953 R 5874 CDS TA20830 3863581 1758913..1762032 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20830 by TMHMM2.0 at aa 12-34; uncharacterized protein 1762032 3863581 TA20830 Theileria annulata uncharacterized protein XP_954327.1 1758913 D 5874 CDS TA20835 3863582 join(1762874..1763870,1763952..1764053,1764145..1765085) 1 1 NC_011129.2 uncharacterized protein 1765085 3863582 TA20835 Theileria annulata uncharacterized protein XP_954328.1 1762874 D 5874 CDS TA20840 3863583 complement(join(1765352..1765444,1765494..1765631,1765881..1766243,1766329..1766385,1766420..1766521,1766647..1766926,1766991..1767082,1767116..1767205,1767239..1767273,1767313..1767441,1767525..1767650,1767716..1768316,1768405..1768636,1768673..1769421)) 1 1 NC_011129.2 Contains possible TPR repeat domains; uncharacterized protein 1769421 3863583 TA20840 Theileria annulata uncharacterized protein XP_954329.1 1765352 R 5874 CDS TA20845 3863584 join(1769616..1769967,1770150..1770317,1770347..1770396,1770489..1770555,1770587..1770679,1770743..1770868,1771011..1771075) 1 1 NC_011129.2 ribosomal protein s15, mitochondrial precursor, putative 1771075 3863584 TA20845 Theileria annulata ribosomal protein s15, mitochondrial precursor, putative XP_954330.1 1769616 D 5874 CDS TA20850 3863585 1771190..1771723 1 1 NC_011129.2 ribosomal protein l6, putative 1771723 3863585 TA20850 Theileria annulata ribosomal protein l6, putative XP_954331.1 1771190 D 5874 CDS TA20855 3863586 complement(join(1772076..1772498,1772528..1772593,1772663..1772764,1772824..1772863,1772913..1772939,1772971..1772992,1773029..1773070,1773265..1773436)) 1 1 NC_011129.2 Part similarity to Plasmodium yoelii (SWALL:EAA20932) and Plasmodium falciparum (SWALL:Q8IE86) hypothetical proteins; Contains a putative signal peptide; Signal peptide predicted for TA20855 by SignalP 2.0 HMM (Signal peptide probability 0.935, signal anchor probability 0.000) with cleavage site probability 0.688 between residues 22 and 23; GPI-Anchor Signal predicted for TA20855 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1773436 3863586 TA20855 Theileria annulata uncharacterized protein XP_954332.1 1772076 R 5874 CDS TA20860 3863587 complement(join(1773640..1773822,1773908..1774075)) 1 1 NC_011129.2 uncharacterized protein 1774075 3863587 TA20860 Theileria annulata uncharacterized protein XP_954333.1 1773640 R 5874 CDS TA20865 3863811 join(1774268..1774864,1774917..1775486) 1 1 NC_011129.2 uncharacterized protein 1775486 3863811 TA20865 Theileria annulata uncharacterized protein XP_954334.1 1774268 D 5874 CDS TA20870 3863812 complement(1775618..1778395) 1 1 NC_011129.2 Signal peptide predicted for TA20870 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.895 between residues 22 and 23; uncharacterized protein 1778395 3863812 TA20870 Theileria annulata uncharacterized protein XP_954335.1 1775618 R 5874 CDS TA20875 3863813 complement(join(1779255..1779630,1779718..1779785,1779855..1779956,1779995..1781921,1781981..1782085,1782166..1784849)) 1 1 NC_011129.2 uncharacterized protein 1784849 3863813 TA20875 Theileria annulata uncharacterized protein XP_954336.1 1779255 R 5874 CDS TA20880 3863814 join(1785396..1785605,1785645..1786567,1786607..1786716,1786747..1786891,1786947..1787415) 1 1 NC_011129.2 uncharacterized protein 1787415 3863814 TA20880 Theileria annulata uncharacterized protein XP_954337.1 1785396 D 5874 CDS TA20885 3863815 complement(join(1787510..1788514,1788573..1788743,1788852..1788919,1789000..1789728,1789867..1790663,1791017..1791126)) 1 1 NC_011129.2 Contains several (12) putative transmembrane domains; 12 probable transmembrane helices predicted for TA20885 by TMHMM2.0 at aa 164-182, 204-226, 231-250, 255-277, 290-312, 322-339, 418-440, 455-477, 484-506, 511-533, 571-590 and 600-622; transporter, putative 1791126 3863815 TA20885 Theileria annulata transporter, putative XP_954338.1 1787510 R 5874 CDS TA20890 3863816 join(1791581..1792390,1792472..1793176) 1 1 NC_011129.2 Shows weak hit (8.03e-03) to Pfam LON domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA20890 by SignalP 2.0 HMM (Signal peptide probability 0.924, signal anchor probability 0.011) with cleavage site probability 0.549 between residues 25 and 26; uncharacterized protein 1793176 3863816 TA20890 Theileria annulata uncharacterized protein XP_954339.1 1791581 D 5874 CDS TA20895 3863817 join(1793278..1793334,1793367..1793460,1793550..1793657,1793690..1793725,1793827..1793987,1794028..1794422,1794559..1794892) 1 1 NC_011129.2 uncharacterized protein 1794892 3863817 TA20895 Theileria annulata uncharacterized protein XP_954340.1 1793278 D 5874 CDS TA20900 3863818 join(1794978..1795349,1795409..1795631,1795681..1795785,1795821..1795942) 1 1 NC_011129.2 acidic leucine-rich nuclear phosphoprotein 32 family, putative 1795942 3863818 TA20900 Theileria annulata acidic leucine-rich nuclear phosphoprotein 32 family, putative XP_954341.1 1794978 D 5874 CDS TA20905 3863819 join(1796100..1796255,1796364..1796709,1796740..1796810,1796938..1797102) 1 1 NC_011129.2 exosome complex exonuclease rrp41, putative 1797102 3863819 TA20905 Theileria annulata exosome complex exonuclease rrp41, putative XP_954342.1 1796100 D 5874 CDS TA20910 3863820 complement(join(1797505..1798925,1799014..1800514)) 1 1 NC_011129.2 aminopeptidase n, putative 1800514 3863820 TA20910 Theileria annulata aminopeptidase n, putative XP_954343.1 1797505 R 5874 CDS TA20915 3863821 complement(1800868..1804056) 1 1 NC_011129.2 Contains a putative signal peptide; putative ribonuclease ii family protein 1804056 3863821 TA20915 Theileria annulata putative ribonuclease ii family protein XP_954344.1 1800868 R 5874 CDS TA20920 3863822 join(1804162..1804224,1804375..1804581,1804656..1804766,1804824..1805015) 1 1 NC_011129.2 Significantly similar to a conserved protein annotated as 'developmental protein' in plants; uncharacterized protein 1805015 3863822 TA20920 Theileria annulata uncharacterized protein XP_954345.1 1804162 D 5874 CDS TA20925 3863823 join(1805252..1806440,1806494..1806582,1806696..1807857,1807890..1807999,1808071..1808181,1808226..1808387) 1 1 NC_011129.2 Contains putative WD40 domains; beta subunit of coatomer complex, putative 1808387 3863823 TA20925 Theileria annulata beta subunit of coatomer complex, putative XP_954346.1 1805252 D 5874 CDS TA20930 3863824 1809490..1810137 1 1 NC_011129.2 Signal peptide predicted for TA20930 by SignalP 2.0 HMM (Signal peptide probability 0.866, signal anchor probability 0.133) with cleavage site probability 0.736 between residues 33 and 34; uncharacterized protein 1810137 3863824 TA20930 Theileria annulata uncharacterized protein XP_954347.1 1809490 D 5874 CDS TA20935 3863825 join(1810428..1810530,1810604..1810767,1810799..1812490) 1 1 NC_011129.2 uncharacterized protein 1812490 3863825 TA20935 Theileria annulata uncharacterized protein XP_954348.1 1810428 D 5874 CDS TA20940 3863826 join(1812662..1812943,1812987..1813444,1813504..1813804,1813885..1814239,1814328..1814443) 1 1 NC_011129.2 Later start possible using a downstream methionine codon in the exon I; 1 probable transmembrane helix predicted for TA20940 by TMHMM2.0 at aa 9-27; at4g32520/f8b4_220 1814443 3863826 TA20940 Theileria annulata at4g32520/f8b4_220 XP_954349.1 1812662 D 5874 CDS TA20945 3863827 join(1814697..1815618,1815722..1816288,1816363..1816625) 1 1 NC_011129.2 ATP synthase beta chain, mitochondrial precursor, putative 1816625 3863827 TA20945 Theileria annulata ATP synthase beta chain, mitochondrial precursor, putative XP_954350.1 1814697 D 5874 CDS TA20955 3863828 complement(join(1817361..1817649,1817687..1817765,1817830..1817916,1817964..1818222,1818276..1818425,1818456..1819261,1819299..1819401)) 1 1 NC_011129.2 Weak SMART hit (e=0.08) to MIF4G domain, found in eIF4G and other rna-binding proteins; rna-binding protein, putative 1819401 3863828 TA20955 Theileria annulata rna-binding protein, putative XP_954351.1 1817361 R 5874 CDS TA20960 3863829 join(1820144..1820208,1820304..1820947,1821017..1822306,1822398..1824734,1824817..1825038,1825100..1825317,1825434..1825473,1825527..1825735,1825769..1825861,1825902..1826033,1826064..1826174) 1 1 NC_011129.2 DNA polymerase i, putative 1826174 3863829 TA20960 Theileria annulata DNA polymerase i, putative XP_954352.1 1820144 D 5874 CDS TA20965 3863715 join(1826909..1827626,1827722..1828320) 1 1 NC_011129.2 Shows weak Pfam hit (5.8e-03) to Rhomboid family protein domain; 5 probable transmembrane helices predicted for TA20965 by TMHMM2.0 at aa 210-232, 292-314, 329-351, 376-398 and 413-435; rhomboid family integral membrane protein, putative 1828320 3863715 TA20965 Theileria annulata rhomboid family integral membrane protein, putative XP_954353.1 1826909 D 5874 CDS TA20970 3863716 join(1828962..1830030,1830066..1830910,1830978..1831127) 1 1 NC_011129.2 Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA20970 by TMHMM2.0 at aa 358-380; uncharacterized protein 1831127 3863716 TA20970 Theileria annulata uncharacterized protein XP_954354.1 1828962 D 5874 CDS TA20975 3863717 complement(join(1831250..1831312,1831342..1831478,1831570..1831896,1831937..1831964,1832084..1832140)) 1 1 NC_011129.2 deoxyuridine 5'-triphosphate nucleotidohydrolase, putative 1832140 3863717 TA20975 Theileria annulata deoxyuridine 5'-triphosphate nucleotidohydrolase, putative XP_954355.1 1831250 R 5874 CDS TA20980 3863718 complement(join(1832296..1833461,1833496..1835299)) 1 1 NC_011129.2 Contains a putative signal peptide; Signal peptide predicted for TA20980 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.982 between residues 19 and 20; uncharacterized protein 1835299 3863718 TA20980 Theileria annulata uncharacterized protein XP_954356.1 1832296 R 5874 CDS TA20985 3863719 complement(1835818..1836483) 1 1 NC_011129.2 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA20985 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.834 between residues 19 and 20; uncharacterized protein 1836483 3863719 TA20985 Theileria annulata uncharacterized protein XP_954357.1 1835818 R 5874 CDS TA20990 3863720 complement(1837225..1837749) 1 1 NC_011129.2 Signal peptide predicted for TA20990 by SignalP 2.0 HMM (Signal peptide probability 0.995, signal anchor probability 0.000) with cleavage site probability 0.837 between residues 21 and 22; uncharacterized protein 1837749 3863720 TA20990 Theileria annulata uncharacterized protein XP_954358.1 1837225 R 5874 CDS TA20995 3863721 complement(join(1838179..1838283,1838351..1838638,1838679..1838747,1838777..1838833,1838887..1839028,1839142..1839260,1839325..1839417)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20995 by TMHMM2.0 at aa 201-223; trna (guanine-n-(7))-methyltransferase, putative 1839417 3863721 TA20995 Theileria annulata trna (guanine-n-(7))-methyltransferase, putative XP_954359.1 1838179 R 5874 CDS TA21000 3863722 join(1839649..1839675,1839724..1839814,1839857..1839962,1839999..1840050) 1 1 NC_011129.2 small nuclear ribonucleoprotein f, putative 1840050 3863722 TA21000 Theileria annulata small nuclear ribonucleoprotein f, putative XP_954360.1 1839649 D 5874 CDS TA21005 3863723 complement(join(1840114..1840315,1840351..1840534,1840591..1840707,1840761..1840839,1840869..1841039,1841079..1841195,1841301..1841436,1841502..1841540,1841670..1841707)) 1 1 NC_011129.2 2 probable transmembrane helices predicted for tmhmm2embl_unknown_000000_1840114_1841707 by TMHMM2.0 at aa 10-32 and 44-66; Signal anchor predicted for TA21005 by SignalP 2.0 HMM (Signal peptide probability 0.037, signal anchor probability 0.861) with cleavage site probability 0.017 between residues 25 and 26; uncharacterized protein 1841707 3863723 TA21005 Theileria annulata uncharacterized protein XP_954361.1 1840114 R 5874 CDS TA21010 3863724 complement(join(1841819..1842104,1842136..1842273,1842306..1842383,1842416..1842611,1842663..1842740,1842771..1842938,1842986..1843103,1843133..1843257,1843315..1843374,1843408..1843500,1843536..1843707)) 1 1 NC_011129.2 ATP-dependent RNA helicase, putative 1843707 3863724 TA21010 Theileria annulata ATP-dependent RNA helicase, putative XP_954362.1 1841819 R 5874 CDS TA21015 3863725 join(1844263..1845670,1845751..1847498) 1 1 NC_011129.2 protein transport protein sec24-like, putative 1847498 3863725 TA21015 Theileria annulata protein transport protein sec24-like, putative XP_954363.1 1844263 D 5874 CDS TA21020 3863726 join(1847776..1847905,1847965..1848105,1848136..1848325,1848358..1848416,1848500..1848597,1848629..1848758,1848793..1849022,1849073..1849132) 1 1 NC_011129.2 uncharacterized protein 1849132 3863726 TA21020 Theileria annulata uncharacterized protein XP_954364.1 1847776 D 5874 CDS TA21025 3863727 join(1849276..1849401,1849434..1849526,1849592..1849672,1849731..1849851,1849881..1849955,1850004..1850303,1850336..1850450,1850494..1850601,1850634..1850676,1850728..1850847,1850915..1850995) 1 1 NC_011129.2 uncharacterized protein 1850995 3863727 TA21025 Theileria annulata uncharacterized protein XP_954365.1 1849276 D 5874 CDS TA21030 3863728 join(1851078..1851163,1851277..1851409,1851493..1851661,1851701..1851765,1851832..1851890,1851951..1852148,1852205..1852268) 1 1 NC_011129.2 ribosomal protein l13, putative 1852268 3863728 TA21030 Theileria annulata ribosomal protein l13, putative XP_954366.1 1851078 D 5874 CDS TA21035 3863729 join(1852375..1852456,1852516..1852732,1852872..1852921,1852951..1853093) 1 1 NC_011129.2 uncharacterized protein 1853093 3863729 TA21035 Theileria annulata uncharacterized protein XP_954367.1 1852375 D 5874 CDS TA21040 3863730 join(1853142..1853511,1853570..1853723,1853775..1853949) 1 1 NC_011129.2 Signal peptide predicted for TA21040 by SignalP 2.0 HMM (Signal peptide probability 0.614, signal anchor probability 0.002) with cleavage site probability 0.277 between residues 15 and 16; GPI-Anchor Signal predicted for TA21040 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1853949 3863730 TA21040 Theileria annulata uncharacterized protein XP_954368.1 1853142 D 5874 CDS TA21045 3863731 complement(1854098..1854703) 1 1 NC_011129.2 Contains a putative signal peptide; Signal peptide predicted for TA21045 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.962 between residues 17 and 18; uncharacterized protein 1854703 3863731 TA21045 Theileria annulata uncharacterized protein XP_954369.1 1854098 R 5874 CDS TA21050 3863732 complement(join(1855365..1856198,1856343..1856399)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA21050 by TMHMM2.0 at aa 138-160; uncharacterized protein 1856399 3863732 TA21050 Theileria annulata uncharacterized protein XP_954370.1 1855365 R 5874 CDS TA21055 3863733 complement(join(1856788..1856841,1856875..1857670,1857734..1857843,1857875..1857966,1858043..1858199)) 1 1 NC_011129.2 Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA21055 by TMHMM2.0 at aa 362-384; proliferation-associated protein 2g4, putative 1858199 3863733 TA21055 Theileria annulata proliferation-associated protein 2g4, putative XP_954371.1 1856788 R 5874 CDS TA21060 3863734 join(1858273..1858281,1858322..1858370,1858403..1858602) 1 1 NC_011129.2 uncharacterized protein 1858602 3863734 TA21060 Theileria annulata uncharacterized protein XP_954372.1 1858273 D 5874 CDS TA21065 3864112 complement(1858951..1859943) 1 1 NC_011129.2 bacterial type gmp reductase; gmp reductase, putative 1859943 3864112 TA21065 Theileria annulata gmp reductase, putative XP_954373.1 1858951 R 5874 CDS TA21070 3864113 join(1860278..1860637,1860668..1860800,1860831..1860917,1860988..1861085,1861125..1861372,1861413..1861460,1861503..1861567,1861597..1861679,1861711..1862034,1862093..1862215) 1 1 NC_011129.2 uncharacterized protein 1862215 3864113 TA21070 Theileria annulata uncharacterized protein XP_954374.1 1860278 D 5874 CDS TA21075 3864114 join(1862614..1862861,1862898..1862990,1863022..1863090,1863156..1863324,1863357..1863471,1863543..1863639,1863680..1864064) 1 1 NC_011129.2 uncharacterized protein 1864064 3864114 TA21075 Theileria annulata uncharacterized protein XP_954375.1 1862614 D 5874 CDS TA21080 3864115 complement(1864153..1866081) 1 1 NC_011129.2 Map2 kinase, putative 1866081 3864115 TA21080 Theileria annulata Map2 kinase, putative XP_954376.1 1864153 R 5874 CDS TA21085 3864116 join(1867282..1867548,1867633..1868760,1868828..1869058,1869129..1869977) 1 1 NC_011129.2 Alternative gene structure possible; uncharacterized protein 1869977 3864116 TA21085 Theileria annulata uncharacterized protein XP_954377.1 1867282 D 5874 CDS TA21090 3864117 complement(join(1870034..1870168,1870210..1870446,1870547..1870585,1870676..1870708)) 1 1 NC_011129.2 uncharacterized protein 1870708 3864117 TA21090 Theileria annulata uncharacterized protein XP_954378.1 1870034 R 5874 CDS TA21095 3864118 join(1870870..1871674,1871702..1871748,1871811..1871942,1872005..1872350,1872415..1872587,1872674..1872853,1872962..1873006) 1 1 NC_011129.2 actin-related protein, putative 1873006 3864118 TA21095 Theileria annulata actin-related protein, putative XP_954379.1 1870870 D 5874 CDS TA21100 3864119 1873451..1875364 1 1 NC_011129.2 11 probable transmembrane helices predicted for TA21100 by TMHMM2.0 at aa 61-83, 145-164, 174-196, 203-225, 240-262, 431-453, 468-490, 497-514, 524-546, 551-573 and 583-605; integral membrane protein, putative 1875364 3864119 TA21100 Theileria annulata integral membrane protein, putative XP_954380.1 1873451 D 5874 CDS TA21105 3864120 join(1875648..1875799,1875855..1876332,1876392..1876475,1876530..1876645,1876699..1876811,1876870..1876937,1876985..1877156,1877186..1877343,1877376..1877439,1877474..1877790) 1 1 NC_011129.2 uncharacterized protein 1877790 3864120 TA21105 Theileria annulata uncharacterized protein XP_954381.1 1875648 D 5874 CDS TA21110 3864121 join(1878205..1878273,1878305..1878590,1878677..1878837) 1 1 NC_011129.2 60S ribosomal protein l11a, putative 1878837 3864121 TA21110 Theileria annulata 60S ribosomal protein l11a, putative XP_954382.1 1878205 D 5874 CDS TA21115 3864122 1879318..1879782 1 1 NC_011129.2 ribosomal protein s18, putative 1879782 3864122 TA21115 Theileria annulata ribosomal protein s18, putative XP_954383.1 1879318 D 5874 CDS TA21120 3864123 join(1879863..1880025,1880087..1880132,1880230..1880393,1880440..1880627,1880658..1880726,1880768..1880816,1880850..1880962,1880996..1881295) 1 1 NC_011129.2 Signal peptide predicted for TA21120 by SignalP 2.0 HMM (Signal peptide probability 0.843, signal anchor probability 0.000) with cleavage site probability 0.734 between residues 14 and 15; uncharacterized protein 1881295 3864123 TA21120 Theileria annulata uncharacterized protein XP_954384.1 1879863 D 5874 CDS TA21125 3864124 complement(join(1881317..1881874,1881904..1882215,1882268..1882522,1882554..1883036)) 1 1 NC_011129.2 uncharacterized protein 1883036 3864124 TA21125 Theileria annulata uncharacterized protein XP_954385.1 1881317 R 5874 CDS TA21130 3864125 complement(1883176..1883919) 1 1 NC_011129.2 uncharacterized protein 1883919 3864125 TA21130 Theileria annulata uncharacterized protein XP_954386.1 1883176 R 5874 CDS TA21135 3864126 1884758..1885555 1 1 NC_011129.2 uncharacterized protein 1885555 3864126 TA21135 Theileria annulata uncharacterized protein XP_954387.1 1884758 D 5874 CDS TA21140 3864127 join(1885716..1886339,1886372..1887106) 1 1 NC_011129.2 uncharacterized protein 1887106 3864127 TA21140 Theileria annulata uncharacterized protein XP_954388.1 1885716 D 5874 CDS TA21145 3864128 complement(1887128..1888678) 1 1 NC_011129.2 transcriptional regulator, putative; uncharacterized protein 1888678 3864128 TA21145 Theileria annulata uncharacterized protein XP_954389.1 1887128 R 5874 CDS TA21150 3864129 join(1888848..1888989,1889024..1889142,1889176..1889224,1889353..1889636,1889671..1889781,1889816..1889978,1890034..1890246,1890307..1890836) 1 1 NC_011129.2 zinc-finger protein zpr1, putative 1890836 3864129 TA21150 Theileria annulata zinc-finger protein zpr1, putative XP_954390.1 1888848 D 5874 CDS TA21155 3864130 complement(join(1890853..1891041,1891193..1891294,1891326..1891394,1891456..1891558,1891633..1891697,1891790..1891911,1891948..1892239,1892269..1892367)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA21155 by TMHMM2.0 at aa 34-56; uncharacterized protein 1892367 3864130 TA21155 Theileria annulata uncharacterized protein XP_954391.1 1890853 R 5874 CDS TA21160 3863528 complement(join(1892418..1894030,1894061..1896572,1896606..1897608,1897640..1897647)) 1 1 NC_011129.2 uncharacterized protein 1897647 3863528 TA21160 Theileria annulata uncharacterized protein XP_954392.1 1892418 R 5874 CDS TA21165 3863529 join(1897802..1897847,1897881..1897968,1898000..1898254,1898372..1898510) 1 1 NC_011129.2 2 probable transmembrane helices predicted for TA21165 by TMHMM2.0 at aa 24-46 and 143-165; uncharacterized protein 1898510 3863529 TA21165 Theileria annulata uncharacterized protein XP_954393.1 1897802 D 5874 CDS TA21175 3863530 complement(join(1898917..1899044,1899110..1899236)) 1 1 NC_011129.2 Smaller than other cyclophilins; no Pfam hit to cyclophilin domain but significant hit to rrm domain; thus, annotated as rna-bing protein; rna-binding protein, putative 1899236 3863530 TA21175 Theileria annulata rna-binding protein, putative XP_954394.1 1898917 R 5874 CDS TA21180 3863531 join(1899327..1899568,1899628..1899776,1899808..1899932,1900029..1900117,1900147..1900242,1900307..1900378,1900554..1901109) 1 1 NC_011129.2 uncharacterized protein 1901109 3863531 TA21180 Theileria annulata uncharacterized protein XP_954395.1 1899327 D 5874 CDS TA21185 3863532 complement(join(1901239..1901574,1901613..1901822)) 1 1 NC_011129.2 uncharacterized protein 1901822 3863532 TA21185 Theileria annulata uncharacterized protein XP_954396.1 1901239 R 5874 CDS TA21190 3863533 complement(join(1902701..1902971,1903003..1903188,1903240..1903552,1903630..1903883,1903956..1904093,1904136..1904247,1904340..1904418,1904450..1904485)) 1 1 NC_011129.2 eukaryotic translation initiation factor 2 gamma subunit, putative 1904485 3863533 TA21190 Theileria annulata eukaryotic translation initiation factor 2 gamma subunit, putative XP_954397.1 1902701 R 5874 CDS TA21195 3863534 1905256..1906521 1 1 NC_011129.2 Very weak hit to ZnF_MFX domain; a type of zinc binding domain found in zinc finger proteins; no similarity to other zinc finger proteins; hence, annotated as a hypothetical protein; uncharacterized protein 1906521 3863534 TA21195 Theileria annulata uncharacterized protein XP_954398.1 1905256 D 5874 CDS TA21200 3863535 join(1906554..1906563,1906680..1906888,1906921..1907112) 1 1 NC_011129.2 Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA21200 by TMHMM2.0 at aa 20-37; uncharacterized protein 1907112 3863535 TA21200 Theileria annulata uncharacterized protein XP_954399.1 1906554 D 5874 CDS TA21205 3863536 join(1907272..1907346,1907376..1907717) 1 1 NC_011129.2 Signal peptide predicted for TA21205 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.000) with cleavage site probability 0.412 between residues 21 and 22; uncharacterized protein 1907717 3863536 TA21205 Theileria annulata uncharacterized protein XP_954400.1 1907272 D 5874 CDS TA21210 3863537 complement(join(1907848..1907940,1908000..1908182,1908278..1908377,1908413..1908510,1908550..1908603)) 1 1 NC_011129.2 bet3 transport protein, putative 1908603 3863537 TA21210 Theileria annulata bet3 transport protein, putative XP_954401.1 1907848 R 5874 CDS TA21215 3863538 join(1908950..1909590,1909647..1909944,1910035..1910172) 1 1 NC_011129.2 uncharacterized protein 1910172 3863538 TA21215 Theileria annulata uncharacterized protein XP_954402.1 1908950 D 5874 CDS TA21220 3863539 join(1910298..1910427,1910511..1910672,1910703..1910741,1910770..1910836,1910909..1911069,1911124..1911277,1911298..1911309,1911468..1911579,1911714..1912015,1912092..1912297,1912385..1912405,1912505..1912601,1912638..1912749) 1 1 NC_011129.2 Shows moderate Pfam hit(7.0e-05) to UPF0054 domain; uncharacterized protein 1912749 3863539 TA21220 Theileria annulata uncharacterized protein XP_954403.1 1910298 D 5874 CDS TA21225 3863540 join(1913232..1914165,1914275..1914439,1914469..1916193,1916289..1919179) 1 1 NC_011129.2 Contains a putative Bromodomain (1.75e-12) and shows weak hit to C2HC type zinc-finger domain (1.67e-01); Bromodomain protein, putative 1919179 3863540 TA21225 Theileria annulata Bromodomain protein, putative XP_954404.1 1913232 D 5874 CDS TA21230 3863541 join(1919281..1919400,1919447..1919696,1919730..1920121) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA21230 by TMHMM2.0 at aa 221-243; Signal peptide predicted for TA21230 by SignalP 2.0 HMM (Signal peptide probability 0.765, signal anchor probability 0.000) with cleavage site probability 0.573 between residues 22 and 23; P24 family protein, putative 1920121 3863541 TA21230 Theileria annulata P24 family protein, putative XP_954405.1 1919281 D 5874 CDS TA21235 3863542 complement(1920325..1923738) 1 1 NC_011129.2 uncharacterized protein 1923738 3863542 TA21235 Theileria annulata uncharacterized protein XP_954406.1 1920325 R 5874 CDS TA21240 3863543 join(1925852..1925913,1926074..1926200,1926272..1927047,1927194..1927551) 1 1 NC_011129.2 tubulin alpha chain, putative 1927551 3863543 TA21240 Theileria annulata tubulin alpha chain, putative XP_954407.1 1925852 D 5874 CDS TA21245 3863544 complement(join(1927661..1927784,1927894..1928147)) 1 1 NC_011129.2 uncharacterized protein 1928147 3863544 TA21245 Theileria annulata uncharacterized protein XP_954408.1 1927661 R 5874 CDS TA21250 3863545 complement(join(1928453..1928576,1928656..1928900)) 1 1 NC_011129.2 SMART 1 transmembrane domain at aa 89-111; 1 probable transmembrane helix predicted for TA21250 by TMHMM2.0 at aa 89-111; uncharacterized protein 1928900 3863545 TA21250 Theileria annulata uncharacterized protein XP_954409.1 1928453 R 5874 CDS TA21255 3863546 complement(join(1929167..1929470,1929520..1931270)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.24 - score = 47.17; uncharacterized protein 1931270 3863546 TA21255 Theileria annulata uncharacterized protein XP_954410.1 1929167 R 5874 CDS TA21260 3863547 join(1931917..1932125,1932156..1932216,1932293..1932359,1932408..1932469,1932505..1932561) 1 1 NC_011129.2 Tap404f10.p1c.cand.118 - score = 43.62; SMART pfam:glutaredoxin (Pf00462) at aa 63-124, E()=1.30e-20; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA21260 by SignalP 2.0 HMM (Signal peptide probability 0.952, signal anchor probability 0.040) with cleavage site probability 0.652 between residues 24 and 25; glutaredoxin, putative 1932561 3863547 TA21260 Theileria annulata glutaredoxin, putative XP_954411.1 1931917 D 5874 CDS TA21265 3863735 join(1932824..1932840,1932866..1933276,1933308..1933394,1933472..1933711,1933763..1934034,1934097..1934223,1934274..1934376,1934409..1934522,1934573..1934932) 1 1 NC_011129.2 SMART Tryp_Spc (SM0020) at aa 119-307, E()=2.79e+00; serine protease (zymogen-like), putative 1934932 3863735 TA21265 Theileria annulata serine protease (zymogen-like), putative XP_954412.1 1932824 D 5874 CDS TA21270 3863736 1935387..1936130 1 1 NC_011129.2 Tap404f10.p1c.cand.119 - score = 10.37; SMART pfam:Ribosomal_L10 (PF00466) at aa 55-161, E()=4.10e-02; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA21270 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.002) with cleavage site probability 0.630 between residues 22 and 23; ribosomal protein L10, putative 1936130 3863736 TA21270 Theileria annulata ribosomal protein L10, putative XP_954413.1 1935387 D 5874 CDS TA21275 3863737 complement(join(1936227..1936511,1936834..1937109,1937144..1937302,1937332..1937450,1937510..1937557,1937589..1937754,1937786..1937906,1937940..1938050,1938081..1938148,1938211..1938291,1938326..1938407,1938448..1938566,1938604..1938696,1938758..1938860,1938892..1939089,1939167..1939267)) 1 1 NC_011129.2 SMART ZnF_UBP (SM0290) at aa 188-249, E()=1.31e-13; pfam:UCH-1 (unknown) at aa 321-352, E()=6.90e-06; pfam:UCH-2 (unknown) at aa 650-708, E()=8.80e-16; ubiquitin carboxyl-terminal hydrolase (UBP14) 1939267 3863737 TA21275 Theileria annulata ubiquitin carboxyl-terminal hydrolase (UBP14) XP_954414.1 1936227 R 5874 CDS TA21280 3863738 1939402..1940571 1 1 NC_011129.2 SMART 3 transmembrane domains at aa 4-26, 314-336 and 356-378; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA21280 by TMHMM2.0 at aa 4-26, 314-336 and 356-378; Signal anchor predicted for TA21280 by SignalP 2.0 HMM (Signal peptide probability 0.049, signal anchor probability 0.781) with cleavage site probability 0.018 between residues 24 and 25; uncharacterized protein 1940571 3863738 TA21280 Theileria annulata uncharacterized protein XP_954415.1 1939402 D 5874 CDS TA21285 3863739 complement(join(1940620..1940652,1940683..1940794,1940872..1940984,1941052..1941129,1941160..1941237,1941328..1941528,1941629..1941718,1942111..1942143,1942176..1942187)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.22 - score = 18.31; SMART RRM (SM0360) at aa 168-241, E()=1.85e-18; eukaryotic translation initiation factor (eiF3 delta) 1942187 3863739 TA21285 Theileria annulata eukaryotic translation initiation factor (eiF3 delta) XP_954416.1 1940620 R 5874 CDS TA21290 3863740 1943871..1944296 1 1 NC_011129.2 Tap404f10.p1c.cand.121 - score = 12.93; uncharacterized protein 1944296 3863740 TA21290 Theileria annulata uncharacterized protein XP_954417.1 1943871 D 5874 CDS TA21295 3863741 complement(join(1944597..1944831,1944880..1944965,1945044..1945239,1945305..1945444,1945607..1945879)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.21 - score = 14.95; SMART DnaJ (SM0271) at aa 72-129, E()=3.27e-18; molecular chaperone (DnaJ-like), putative 1945879 3863741 TA21295 Theileria annulata molecular chaperone (DnaJ-like), putative XP_954418.1 1944597 R 5874 CDS TA21300 3863742 1945969..1946739 1 1 NC_011129.2 Tap404f10.p1c.cand.122 - score = 17.96; uncharacterized protein 1946739 3863742 TA21300 Theileria annulata uncharacterized protein XP_954419.1 1945969 D 5874 CDS TA21305 3863743 complement(join(1946883..1946904,1946935..1947001,1947054..1947135,1947169..1947253,1947328..1947479,1947532..1947666)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.20 - score = 21.42; 3'-5' exoribonuclease (CSL4) 1947666 3863743 TA21305 Theileria annulata 3'-5' exoribonuclease (CSL4) XP_954420.1 1946883 R 5874 CDS TA21310 3863744 complement(join(1947737..1948520,1948589..1949650,1949756..1952412)) 1 1 NC_011129.2 small overlap at the 5' end with gene TA21315; uncharacterized protein 1952412 3863744 TA21310 Theileria annulata uncharacterized protein XP_954421.1 1947737 R 5874 CDS TA21315 3863745 join(1952384..1952400,1952623..1952992) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA21315 by TMHMM2.0 at aa 13-35; small overlap at the 5' end with gene TA21310; uncharacterized protein 1952992 3863745 TA21315 Theileria annulata uncharacterized protein XP_954422.1 1952384 D 5874 CDS TA21320 3863746 complement(join(1953425..1953706,1953781..1953813,1953941..1953955)) 1 1 NC_011129.2 uncharacterized protein 1953955 3863746 TA21320 Theileria annulata uncharacterized protein XP_954423.1 1953425 R 5874 CDS TA21325 3863747 complement(join(1954149..1954517,1954697..1954920,1955018..1955124,1955207..1955517,1955604..1955777,1955846..1956444,1956512..1956575,1956632..1957084)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.18 - score = 58.57; SMART STYKc (SM0221) at aa 442-713, E()=2.07e-08; serine/threonine protein kinase, putative 1957084 3863747 TA21325 Theileria annulata serine/threonine protein kinase, putative XP_954424.1 1954149 R 5874 CDS TA21330 3863748 join(1957232..1957281,1957439..1957481,1957516..1957605,1957758..1957949,1958018..1958188,1958324..1958605,1958706..1958858,1958940..1959074,1959136..1959162) 1 1 NC_011129.2 Tap404f10.p1c.cand.124 - score = 45.82; SMART pfam:NAD_Gly3P_dh (PF01210) at aa 29-371, E()=2.10e-139; glycerol-3-phosphate dehydrogenase (gpdh), putative 1959162 3863748 TA21330 Theileria annulata glycerol-3-phosphate dehydrogenase (gpdh), putative XP_954425.1 1957232 D 5874 CDS TA21335 3863749 join(1959327..1959644,1959738..1959825,1959914..1960089,1960187..1960333,1960420..1960523,1960569..1960677) 1 1 NC_011129.2 Tap404f10.p1c.cand.124 - score = 45.82; SMART 3 TPR (SM0028) domains, at aa 54-87, E()=3.24e-04; 88-121, E()=3.87e-02; 122-155, E()=3.32e+01; Ubox (SM0504) at aa 236-299, E()=6.87e-16; uncharacterized protein 1960677 3863749 TA21335 Theileria annulata uncharacterized protein XP_954426.1 1959327 D 5874 CDS TA21340 3863750 join(1960829..1961012,1961047..1961327,1961364..1961451,1961486..1961552,1961602..1961711,1961778..1961881,1961911..1962255,1962334..1962514,1962544..1962932) 1 1 NC_011129.2 Tap404f10.p1c.cand.125 - score = 54.15; SMART pfam:GTP_OBG (PF01018) at aa 81-428, E()=7.30e-31; GTP-binding protein, putative 1962932 3863750 TA21340 Theileria annulata GTP-binding protein, putative XP_954427.1 1960829 D 5874 CDS TA21345 3863751 complement(1963025..1963423) 1 1 NC_011129.2 uncharacterized protein 1963423 3863751 TA21345 Theileria annulata uncharacterized protein XP_954428.1 1963025 R 5874 CDS TA21350 3863752 complement(join(1963740..1963796,1963848..1963948,1963982..1964236,1964313..1964360,1964435..1964764,1964837..1965514,1965610..1965674,1965705..1965862,1965892..1965978,1966027..1966248,1966336..1966516,1966559..1966796,1966845..1966980,1967050..1967222,1967287..1967323)) 1 1 NC_011129.2 uncharacterized protein 1967323 3863752 TA21350 Theileria annulata uncharacterized protein XP_954429.1 1963740 R 5874 CDS TA21355 3863753 1967929..1968858 1 1 NC_011129.2 Tap404f10.p1c.cand.126 - score = 28.45; SMART pfam:Ribosomal_L10 (PF0486) at aa 5-107, E()=4.20e-30; pfam:60_S_ribosomal (PF00428) at aa 204-309, E()=2.90e-05; ribosomal phosphoprotein P0, putative 1968858 3863753 TA21355 Theileria annulata ribosomal phosphoprotein P0, putative XP_954430.1 1967929 D 5874 CDS TA21360 3863430 1969342..1969581 1 1 NC_011129.2 Tap404f10.p1c.cand.127 - score = 9.23; SMART pfam:Ribosomal_L38e (PF01781) at aa 2-74, E()=4.50e-12; 60S ribosomal protein L38, putative 1969581 3863430 TA21360 Theileria annulata 60S ribosomal protein L38, putative XP_954431.1 1969342 D 5874 CDS TA21365 3863431 complement(join(1969699..1969809,1969850..1969955,1970024..1970165,1970219..1970326,1970361..1970552,1970622..1970811,1970951..1971190)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.15 - score = 22.05; SMART pfam:lactamase_B (PF00753) at aa 90-283, E()=4.80e-23; hydroxyacylglutathione hydrolase, putative 1971190 3863431 TA21365 Theileria annulata hydroxyacylglutathione hydrolase, putative XP_954432.1 1969699 R 5874 CDS TA21370 3863432 join(1971560..1971631,1971697..1971830,1971941..1972082,1972175..1972849) 1 1 NC_011129.2 SMART 3 transmembrane domains at aa 20-42, 52-71 and 78-100; 3 probable transmembrane helices predicted for TA21370 by TMHMM2.0 at aa 20-42, 52-71 and 78-100; Signal anchor predicted for TA21370 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.843) with cleavage site probability 0.003 between residues 42 and 43; uncharacterized protein 1972849 3863432 TA21370 Theileria annulata uncharacterized protein XP_954433.1 1971560 D 5874 CDS TA21375 3863433 complement(join(1973142..1974190,1974234..1974528)) 1 1 NC_011129.2 uncharacterized protein 1974528 3863433 TA21375 Theileria annulata uncharacterized protein XP_954434.1 1973142 R 5874 CDS TA21380 3863434 complement(join(1974993..1975975,1976087..1976321)) 1 1 NC_011129.2 uncharacterized protein 1976321 3863434 TA21380 Theileria annulata uncharacterized protein XP_954435.1 1974993 R 5874 CDS TA21385 3863435 1976843..1978027 1 1 NC_011129.2 Tap404f10.p1c.cand.129 - score = 86.86; uncharacterized protein 1978027 3863435 TA21385 Theileria annulata uncharacterized protein XP_954436.1 1976843 D 5874 CDS TA21390 3863436 1978460..1980313 1 1 NC_011129.2 small overlap at the 3' end with gene TA21395; SMART 2 transmembrane domains at aa 348-370 and 563-585; 2 probable transmembrane helices predicted for TA21390 by TMHMM2.0 at aa 348-370 and 563-585; Theileria parva Tpr-related protein, putative 1980313 3863436 TA21390 Theileria annulata Theileria parva Tpr-related protein, putative XP_954437.1 1978460 D 5874 CDS TA21395 3863437 complement(join(1980276..1980924,1980934..1981076)) 1 1 NC_011129.2 small overlap at the 3' end with gene TA21390; SMART 1 transmembrane domain at aa 15-37; 1 probable transmembrane helix predicted for TA21395 by TMHMM2.0 at aa 15-37; uncharacterized protein 1981076 3863437 TA21395 Theileria annulata uncharacterized protein XP_954438.1 1980276 R 5874 CDS TA21400 3863438 complement(1981122..1981511) 1 1 NC_011129.2 Tap404f10.p1c.; uncharacterized protein 1981511 3863438 TA21400 Theileria annulata uncharacterized protein XP_954439.1 1981122 R 5874 CDS TA21405 3863439 complement(join(1981577..1981705,1981750..1981862,1981932..1982153,1982221..1982347,1982380..1982444,1982476..1982532,1982620..1982836,1982893..1982997,1983130..1983354)) 1 1 NC_011129.2 SMART AAA (SM0382) at aa 199-338, E()=4.45e-23; 226S proteasome regulatory particle, putative 1983354 3863439 TA21405 Theileria annulata 226S proteasome regulatory particle, putative XP_954440.1 1981577 R 5874 CDS TA21410 3863440 join(1983694..1984501,1984564..1986089,1986159..1986254,1986349..1986435,1986465..1986527,1986557..1986688,1986720..1986802,1987024..1987077,1987238..1987349) 1 1 NC_011129.2 Tap404f10.p1c.cand.130 - score = 55.90; uncharacterized protein 1987349 3863440 TA21410 Theileria annulata uncharacterized protein XP_954441.1 1983694 D 5874 CDS TA21415 3863441 complement(join(1987525..1989990,1990081..1990561,1990620..1990708,1990766..1990931,1991009..1991160,1991246..1991472,1991507..1991825)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.10 - score = 100.53; SMART pfam:SMC_N (PF02463) at aa 72-233, E()=9.90e-37; pfam:SMC_C (PF02483) at aa 1067-1291, E()=4.10e-25; SMC (structural maintenance of chromosome) protein (type 1), putative 1991825 3863441 TA21415 Theileria annulata SMC (structural maintenance of chromosome) protein (type 1), putative XP_954442.1 1987525 R 5874 CDS TA21420 3863442 join(1992135..1992249,1992267..1992331,1992389..1992700,1992785..1992868,1992901..1993089) 1 1 NC_011129.2 SMART 2 RRM (SM0360) at aa 26-104, E()=2.56e+00; 130-197, E()=3.04e-05; 1 transmembrane domain at aa 226-248; 1 probable transmembrane helix predicted for TA21420 by TMHMM2.0 at aa 226-248; GPI-Anchor Signal predicted for TA21420 by DGPI v2.04, no cleavage site predicted; RNA binding protein, putative 1993089 3863442 TA21420 Theileria annulata RNA binding protein, putative XP_954443.1 1992135 D 5874 CDS TA21425 3863443 complement(join(1993216..1993457,1993575..1993660,1993692..1993958,1994047..1994132,1994163..1994356,1994453..1994538,1994570..1994724,1994753..1995103,1995202..1995288)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.9 - score = 32.55; uncharacterized protein 1995288 3863443 TA21425 Theileria annulata uncharacterized protein XP_954444.1 1993216 R 5874 CDS TA21430 3863444 join(1995762..1997484,1997570..1997790,1997873..1998546,1998651..1999116,1999251..1999462,1999608..1999869,1999900..1999991,2000024..2000091,2000165..2000250,2000278..2000412) 1 1 NC_011129.2 Tap404f10.p1c.cand.134 - score = 101.54; GPI-Anchor Signal predicted for TA21430 by DGPI v2.04 with cleavage site probability 0.2924 near 1292; importin (karyopherin) beta, putative 2000412 3863444 TA21430 Theileria annulata importin (karyopherin) beta, putative XP_954445.1 1995762 D 5874 CDS TA21435 3863445 join(2000871..2001629,2001717..2002057,2002111..2003043,2003126..2003283,2003354..2003432,2003513..2003698,2003733..2003808) 1 1 NC_011129.2 Tap404f10.p1c.cand.135 - score = 68.53; Tap404f10.p1c.cand.135 - score = 68.53; SMART SET (SM0317) at aa 703-834, E()=5.50e-20; uncharacterized protein 2003808 3863445 TA21435 Theileria annulata uncharacterized protein XP_954446.1 2000871 D 5874 CDS TA21440 3863446 complement(join(2003862..2004050,2004086..2004265)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.8 - score = 14.15; uncharacterized protein 2004265 3863446 TA21440 Theileria annulata uncharacterized protein XP_954447.1 2003862 R 5874 CDS TA21445 3863447 complement(join(2004430..2004708,2004740..2005005,2005076..2005501,2005542..2005671)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.7 - score = 32.55; SMART pfam:GTP1_OBG (PF01018) at aa 1-268, E()=2.40e-124; pfam:TGS (PF02824) at aa 287-365, E()=4.50e-33; GTP-binding protein, putative 2005671 3863447 TA21445 Theileria annulata GTP-binding protein, putative XP_954448.1 2004430 R 5874 CDS TA21450 3863448 join(2005983..2006289,2006334..2006429,2006459..2006616,2006647..2006772,2006825..2006982,2007012..2007107,2007142..2007206,2007236..2007517,2007548..2007606,2007648..2007833,2007872..2008060,2008092..2008252,2008294..2008894) 1 1 NC_011129.2 Tap404f10.p1c.cand.136 - score = 78.21; SMART pfam:GTP_EFTU (PF00009) at aa 97-395, E()=1.90e-82; pfam:GTP_EFTU_D2 (PF03144) at aa 445-523, E()=5.10e-21; pfam:EFG_C (PF00679) at aa 644-816, E()=1.70e-76; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal anchor predicted for TA21450 by SignalP 2.0 HMM (Signal peptide probability 0.158, signal anchor probability 0.765) with cleavage site probability 0.130 between residues 24 and 25; translation elongation factor G (EF-G), putative 2008894 3863448 TA21450 Theileria annulata translation elongation factor G (EF-G), putative XP_954449.1 2005983 D 5874 CDS TA21455 3863449 complement(join(2008931..2009186,2009220..2009340,2009382..2009859)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.6 - score = 26.01; SMART pfam:zf-MYND (PF01753) at aa 243-282, E()=1.20e-09; uncharacterized protein 2009859 3863449 TA21455 Theileria annulata uncharacterized protein XP_954450.1 2008931 R 5874 CDS TA21460 3863926 complement(join(2010107..2010470,2010509..2010572,2010647..2010740)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.5 - score = 24.13; SMART pfam:TCTP (PF00838) at aa 1-170, E()=9.50e-39; p23 (translationally controlled tumor protein homolog), putative 2010740 3863926 TA21460 Theileria annulata p23 (translationally controlled tumor protein homolog), putative XP_954451.1 2010107 R 5874 CDS TA21465 3863927 join(2011250..2011951,2011984..2012441,2012472..2012529,2012561..2012647) 1 1 NC_011129.2 Tap404f10.p1c.cand.137 - score = 126.63; uncharacterized protein 2012647 3863927 TA21465 Theileria annulata uncharacterized protein XP_954452.1 2011250 D 5874 CDS TA21470 3863928 join(2012709..2014402,2014476..2014549,2014581..2014678,2014735..2015634) 1 1 NC_011129.2 Tap404f10.p1c.cand.137 - score = 126.63; SMART 7 MORN (SM0698) domains at aa 541-562, E()=1.73e+00; 564-585, E()=8.22e-06; 586-607, E()=2.90e-01; 608-629, E()=3.37e-02; 635-652, E()=2.09e+01; 677-698, E()=7.31e-01 and 838-859, E()=1.12e+00; Signal peptide predicted for TA21470 by SignalP 2.0 HMM (Signal peptide probability 0.924, signal anchor probability 0.019) with cleavage site probability 0.805 between residues 26 and 27; uncharacterized protein 2015634 3863928 TA21470 Theileria annulata uncharacterized protein XP_954453.1 2012709 D 5874 CDS TA21475 3863929 complement(join(2015689..2015775,2015848..2015937,2015967..2016050,2016080..2016202,2016234..2016497)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.4 - score = 20.35; uncharacterized protein 2016497 3863929 TA21475 Theileria annulata uncharacterized protein XP_954454.1 2015689 R 5874 CDS TA21480 3863930 join(2016705..2017282,2017312..2018008,2018038..2018664) 1 1 NC_011129.2 Tap404f10.p1c.cand.138 - score = 42.79; uncharacterized protein 2018664 3863930 TA21480 Theileria annulata uncharacterized protein XP_954455.1 2016705 D 5874 CDS TA21485 3863931 join(2018758..2018946,2018988..2019247,2019284..2019374) 1 1 NC_011129.2 Tap404f10.p1c.cand.139 - score = 14.27; uncharacterized protein 2019374 3863931 TA21485 Theileria annulata uncharacterized protein XP_954456.1 2018758 D 5874 CDS TA21490 3863932 join(2019677..2019801,2019836..2019892,2019924..2020006,2020039..2020124,2020157..2020215,2020309..2020502,2020541..2020601,2020633..2020743,2020773..2021076) 1 1 NC_011129.2 Tap404f10.p1c.cand.140 - score = 32.74; SMART pfam:UPF0034 (unknown) at aa 29-326, E()=5.20e-50; uncharacterized protein 2021076 3863932 TA21490 Theileria annulata uncharacterized protein XP_954457.1 2019677 D 5874 CDS TA21495 3863933 join(2021206..2021296,2021344..2021606) 1 1 NC_011129.2 Tap404f10.p1c.cand.141 - score = 17.19; uncharacterized protein 2021606 3863933 TA21495 Theileria annulata uncharacterized protein XP_954458.1 2021206 D 5874 CDS TA21500 3863934 join(2021796..2021835,2021880..2021950,2021982..2022106,2022138..2022198,2022227..2022277) 1 1 NC_011129.2 Tap404f10.p1c.cand.141 - score = 17.19; SMART pfam:KE2 (PF01920) at aa 2-108, E()=4.70e-06; prefoldin subunit (KE2) 2022277 3863934 TA21500 Theileria annulata prefoldin subunit (KE2) XP_954459.1 2021796 D 5874 CDS TA21505 3863935 complement(join(2022283..2023562,2023594..2024211,2024246..2024390)) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.3 - score = 49.14; uncharacterized protein 2024390 3863935 TA21505 Theileria annulata uncharacterized protein XP_954460.1 2022283 R 5874 CDS TA21510 3863936 complement(2026512..2033729) 1 1 NC_011129.2 Tap404f10.p1c.C.cand.2 - score = 68.47; SMART 11 transmembrane domains at aa 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361, 554-576, 1751-1769, 1877-1899 and 1914-1936; 12 probable transmembrane helices predicted for TA21510 by TMHMM2.0 at aa 25-47, 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361, 554-576, 1751-1769, 1877-1899 and 1914-1936; Signal anchor predicted for TA21510 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.985) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein 2033729 3863936 TA21510 Theileria annulata uncharacterized protein XP_954461.1 2026512 R 5874 CDS TA21515 3863937 2035828..2043045 1 1 NC_011129.2 SMART 8 transmembrane domains at aa 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361 and 554-576; 12 probable transmembrane helices predicted for TA21515 by TMHMM2.0 at aa 25-47, 77-96, 101-123, 129-151, 210-232, 259-281, 302-324, 339-361, 554-576, 1751-1769, 1877-1899 and 1914-1936; Signal anchor predicted for TA21515 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.985) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein 2043045 3863937 TA21515 Theileria annulata uncharacterized protein XP_954462.1 2035828 D 5874 CDS TA19700 3863866 join(2044234..2044861,2044891..2045675,2045705..2046184) 1 1 NC_011129.2 glutathione synthetase, putative 2046184 3863866 TA19700 Theileria annulata glutathione synthetase, putative XP_954463.1 2044234 D 5874 CDS TA19695 3863865 2047039..2055042 1 1 NC_011129.2 Weak SMART hit (7.9e-01) to MATH (meprin & TRAF homology domain; part of the protein has considerable similarity to P. falciparum hypothetical protein pfe0570W; uncharacterized protein 2055042 3863865 TA19695 Theileria annulata uncharacterized protein XP_954464.1 2047039 D 5874 CDS TA19690 3863864 complement(join(2055243..2055418,2055468..2055530,2055560..2055644,2055719..2055846,2055899..2056121,2056152..2056450,2056482..2056670,2056702..2056912)) 1 1 NC_011129.2 dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative 2056912 3863864 TA19690 Theileria annulata dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative XP_954465.1 2055243 R 5874 CDS TA19685 3863863 2057553..2058293 1 1 NC_011129.2 Signal peptide predicted for TA19685 by SignalP 2.0 HMM (Signal peptide probability 0.927, signal anchor probability 0.000) with cleavage site probability 0.398 between residues 21 and 22; uncharacterized protein 2058293 3863863 TA19685 Theileria annulata uncharacterized protein XP_954466.1 2057553 D 5874 CDS TA19680 3863862 complement(join(2058405..2063484,2063513..2064330)) 1 1 NC_011129.2 uncharacterized protein 2064330 3863862 TA19680 Theileria annulata uncharacterized protein XP_954467.1 2058405 R 5874 CDS TA19675 3863861 join(2065652..2066614,2066657..2067055) 1 1 NC_011129.2 uncharacterized protein 2067055 3863861 TA19675 Theileria annulata uncharacterized protein XP_954468.1 2065652 D 5874 CDS TA19665 3863859 2068135..2076450 1 1 NC_011129.2 SfiI-subtelomeric fragment related protein family member, putative 2076450 3863859 TA19665 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954469.1 2068135 D 5874 CDS TA19660 3863858 2077383..2084795 1 1 NC_011129.2 SfiI-subtelomeric fragment related protein family member, putative 2084795 3863858 TA19660 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954470.1 2077383 D 5874 CDS TA19655 3863857 join(2085551..2085564,2085699..2085918,2085950..2086033,2086065..2086163) 1 1 NC_011129.2 uncharacterized protein 2086163 3863857 TA19655 Theileria annulata uncharacterized protein XP_954471.1 2085551 D 5874 CDS TA19650 3863856 complement(join(2086423..2086545,2086583..2086782,2086860..2086955,2087024..2087136,2087256..2087283,2087330..2087364,2087462..2087521,2087802..2087910,2087944..2087990,2088029..2088129,2088169..2088236,2088268..2088590,2088808..2088847,2088883..2089004,2089083..2089165)) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19650 by TMHMM2.0 at aa 30-52; Signal peptide predicted for TA19650 by SignalP 2.0 HMM (Signal peptide probability 0.733, signal anchor probability 0.264) with cleavage site probability 0.664 between residues 51 and 52; uncharacterized protein 2089165 3863856 TA19650 Theileria annulata uncharacterized protein XP_954472.1 2086423 R 5874 CDS TA19645 3863855 join(2089753..2090509,2090553..2090605,2090685..2090862,2090897..2090961,2091035..2091133,2091181..2091712,2091802..2091901,2091931..2092099) 1 1 NC_011129.2 4 probable transmembrane helices predicted for TA19645 by TMHMM2.0 at aa 117-139, 203-225, 297-319 and 332-354; ABC transporter, putative 2092099 3863855 TA19645 Theileria annulata ABC transporter, putative XP_954473.1 2089753 D 5874 CDS TA19640 3863854 join(2092215..2092529,2092773..2092854,2092884..2093462,2093497..2093897,2093930..2094130) 1 1 NC_011129.2 uncharacterized protein 2094130 3863854 TA19640 Theileria annulata uncharacterized protein XP_954474.1 2092215 D 5874 CDS TA19635 3863853 complement(join(2094187..2094501,2094554..2094628,2094687..2094707,2094739..2095037,2095103..2095132,2095164..2095301,2095335..2095430,2095496..2095607)) 1 1 NC_011129.2 Signal peptide predicted for TA19635 by SignalP 2.0 HMM (Signal peptide probability 0.906, signal anchor probability 0.000) with cleavage site probability 0.389 between residues 26 and 27; uncharacterized protein 2095607 3863853 TA19635 Theileria annulata uncharacterized protein XP_954475.1 2094187 R 5874 CDS TA19630 3863852 join(2095818..2095997,2096029..2096098,2096132..2096236,2096293..2097026,2097089..2097163) 1 1 NC_011129.2 uncharacterized protein 2097163 3863852 TA19630 Theileria annulata uncharacterized protein XP_954476.1 2095818 D 5874 CDS TA19625 3863851 join(2097305..2097660,2097681..2097850,2097903..2097988,2098021..2098100,2098131..2098431) 1 1 NC_011129.2 uncharacterized protein 2098431 3863851 TA19625 Theileria annulata uncharacterized protein XP_954477.1 2097305 D 5874 CDS TA19620 3863850 join(2098716..2099044,2099094..2099281,2099336..2099409,2099460..2099619,2099651..2099744,2099775..2099931,2100033..2100161,2100195..2100314,2100392..2100791,2100895..2101055) 1 1 NC_011129.2 Alternative gene structure possible; 1 or more introns possible in exon 9 in the current gene model; contains 5 putative transmembrane domains; 6 probable transmembrane helices predicted for TA19620 by TMHMM2.0 at aa 144-166, 222-244, 251-273, 383-405, 452-474 and 489-511; acyl transferase, putative 2101055 3863850 TA19620 Theileria annulata acyl transferase, putative XP_954478.1 2098716 D 5874 CDS TA19610 3864053 join(2101219..2101333,2101387..2101503,2101570..2103110) 1 1 NC_011129.2 Contains conserved domain; weak Pafm hit (9.3e-01) to DUF164 domain; uncharacterized protein 2103110 3864053 TA19610 Theileria annulata uncharacterized protein XP_954479.1 2101219 D 5874 CDS TA19605 3864052 complement(join(2103152..2103672,2103758..2104496)) 1 1 NC_011129.2 Weak Pfam hit (3.9e-02) to mRNA_triPase domain; mrna capping enzyme subunit, putative 2104496 3864052 TA19605 Theileria annulata mrna capping enzyme subunit, putative XP_954480.1 2103152 R 5874 CDS TA19600 3864051 join(2104931..2105173,2105267..2105358,2105412..2105658,2105716..2105820) 1 1 NC_011129.2 Signal peptide predicted for TA19600 by SignalP 2.0 HMM (Signal peptide probability 0.608, signal anchor probability 0.198) with cleavage site probability 0.308 between residues 24 and 25; cyclophilin 1, putative 2105820 3864051 TA19600 Theileria annulata cyclophilin 1, putative XP_954481.1 2104931 D 5874 CDS TA19595 3864050 complement(join(2105937..2106388,2106474..2110167,2110237..2110596)) 1 1 NC_011129.2 damage-specific DNA binding protein 1, putative 2110596 3864050 TA19595 Theileria annulata damage-specific DNA binding protein 1, putative XP_954482.1 2105937 R 5874 CDS TA19590 3864049 complement(join(2110777..2111034,2111064..2111140,2111196..2111847,2111910..2112017,2112051..2112152,2112225..2112353,2112406..2112770,2112832..2112939,2112971..2113680,2113708..2113973)) 1 1 NC_011129.2 t-cell activation-related wd repeat protein, putative 2113973 3864049 TA19590 Theileria annulata t-cell activation-related wd repeat protein, putative XP_954483.1 2110777 R 5874 CDS TA19585 3864048 join(2114800..2114899,2114983..2115125,2115188..2115346,2115401..2115493,2115558..2115974,2116048..2116200,2116233..2116459,2116590..2116893) 1 1 NC_011129.2 chaperonin containing tcp-1 delta subunit, putative 2116893 3864048 TA19585 Theileria annulata chaperonin containing tcp-1 delta subunit, putative XP_954484.1 2114800 D 5874 CDS TA19580 3864047 complement(join(2117005..2117344,2117445..2118153,2118262..2118326,2118378..2118471,2118515..2118584)) 1 1 NC_011129.2 Contains putative WD40 repeat domains; Shows weak Pfam hit (2.3e-03) to CCCH type zinc finger domain; zinc finger protein, putative 2118584 3864047 TA19580 Theileria annulata zinc finger protein, putative XP_954485.1 2117005 R 5874 CDS TA19575 3864046 complement(2118880..2120700) 1 1 NC_011129.2 TapCf04.q1c.cand.104 - score = 33.11; uncharacterized protein 2120700 3864046 TA19575 Theileria annulata uncharacterized protein XP_954486.1 2118880 R 5874 CDS TA19570 3864045 complement(join(2121285..2121782,2121827..2121978,2122051..2122149,2122186..2122315)) 1 1 NC_011129.2 RNA-binding protein, putative 2122315 3864045 TA19570 Theileria annulata RNA-binding protein, putative XP_954487.1 2121285 R 5874 CDS TA19565 3864044 complement(join(2122466..2122571,2122638..2122841,2122906..2123066,2123101..2123230,2123294..2123586)) 1 1 NC_011129.2 TapCf04.q1c.cand.102 - score = 36.30; pre-rRNA processing protein, putative 2123586 3864044 TA19565 Theileria annulata pre-rRNA processing protein, putative XP_954488.1 2122466 R 5874 CDS TA19550 3864041 complement(2123999..2126071) 1 1 NC_011129.2 rna-associated protein, putative 2126071 3864041 TA19550 Theileria annulata rna-associated protein, putative XP_954489.1 2123999 R 5874 CDS TA19545 3864040 join(2126987..2129023,2129219..2130514) 1 1 NC_011129.2 TapCf04.q1c.C.cand.18 - score = 95.61; eukaryotic translation initiation factor 3 subunit 10, putative 2130514 3864040 TA19545 Theileria annulata eukaryotic translation initiation factor 3 subunit 10, putative XP_954490.1 2126987 D 5874 CDS TA19540 3864039 2130790..2131086 1 1 NC_011129.2 TapCf04.q1c.C.cand.19 - score = 12.00; dynein light chain 1, putative 2131086 3864039 TA19540 Theileria annulata dynein light chain 1, putative XP_954491.1 2130790 D 5874 CDS TA19535 3864038 complement(join(2131200..2131323,2131483..2131634,2131739..2131900)) 1 1 NC_011129.2 DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide, putative 2131900 3864038 TA19535 Theileria annulata DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide, putative XP_954492.1 2131200 R 5874 CDS TA19530 3864037 complement(join(2131950..2132058,2132113..2132548,2132694..2132804,2133008..2133121,2133155..2133248,2133275..2133331)) 1 1 NC_011129.2 uncharacterized protein 2133331 3864037 TA19530 Theileria annulata uncharacterized protein XP_954493.1 2131950 R 5874 CDS TA19525 3864036 join(2133871..2133981,2134015..2134140,2134217..2134319,2134434..2134597,2134629..2134704,2134729..2134838,2134907..2135136,2135170..2135563,2135598..2135678) 1 1 NC_011129.2 Contains putative WD40 domains; WD40 domain protein, putative 2135678 3864036 TA19525 Theileria annulata WD40 domain protein, putative XP_954494.1 2133871 D 5874 CDS TA19520 3864035 join(2136895..2138143,2138343..2138603,2138716..2138978) 1 1 NC_011129.2 uncharacterized protein 2138978 3864035 TA19520 Theileria annulata uncharacterized protein XP_954495.1 2136895 D 5874 CDS TA19515 3863655 complement(join(2139398..2146339,2146436..2151691,2151774..2151896,2152059..2152753,2152787..2152874,2152905..2153057)) 1 1 NC_011129.2 ubiquitin-protein ligase 1, putative 2153057 3863655 TA19515 Theileria annulata ubiquitin-protein ligase 1, putative XP_954496.1 2139398 R 5874 CDS TA19510 3863654 join(2154314..2154487,2154542..2154656,2154695..2154772,2154835..2154878,2154913..2155005) 1 1 NC_011129.2 centrin 3, putative 2155005 3863654 TA19510 Theileria annulata centrin 3, putative XP_954497.1 2154314 D 5874 CDS TA19505 3863653 join(2155088..2155135,2155245..2155339,2155461..2155535,2155612..2155763,2155830..2155951,2155981..2156073,2156109..2156513,2156749..2156781) 1 1 NC_011129.2 uncharacterized protein 2156781 3863653 TA19505 Theileria annulata uncharacterized protein XP_954498.1 2155088 D 5874 CDS TA19500 3863652 join(2157124..2157372,2157487..2157765) 1 1 NC_011129.2 DNA-directed RNA polymerase ii, putative 2157765 3863652 TA19500 Theileria annulata DNA-directed RNA polymerase ii, putative XP_954499.1 2157124 D 5874 CDS TA19495 3863651 join(2158057..2158201,2158226..2158473,2158535..2158720) 1 1 NC_011129.2 Ahp/TSA family-related protein, putative 2158720 3863651 TA19495 Theileria annulata Ahp/TSA family-related protein, putative XP_954500.1 2158057 D 5874 CDS TA19485 3863650 complement(join(2158917..2159073,2159108..2159145,2159234..2159302,2159339..2159524,2159564..2159662,2159691..2159795,2159826..2159882,2159913..2160013,2160043..2160238,2160271..2160366,2160397..2160563,2160617..2160971)) 1 1 NC_011129.2 TapCf04.q1c.cand.98 - score = 35.99; uncharacterized protein 2160971 3863650 TA19485 Theileria annulata uncharacterized protein XP_954501.1 2158917 R 5874 CDS TA19480 3863649 join(2161482..2161546,2161614..2161779,2161810..2162097,2162127..2162213,2162253..2162301,2162335..2162462,2162493..2162570,2162600..2162665,2162698..2163174) 1 1 NC_011129.2 2 probable transmembrane helices predicted for TA19480 by TMHMM2.0 at aa 392-414 and 441-463; glycerol-3-phosphate acyltransferase, putative 2163174 3863649 TA19480 Theileria annulata glycerol-3-phosphate acyltransferase, putative XP_954502.1 2161482 D 5874 CDS TA19475 3863648 complement(join(2163866..2164694,2164729..2165099,2165202..2165315)) 1 1 NC_011129.2 3 probable transmembrane helices predicted for TA19475 by TMHMM2.0 at aa 26-45, 60-82 and 95-117; Signal anchor predicted for TA19475 by SignalP 2.0 HMM (Signal peptide probability 0.007, signal anchor probability 0.980) with cleavage site probability 0.006 between residues 46 and 47; uncharacterized protein 2165315 3863648 TA19475 Theileria annulata uncharacterized protein XP_954503.1 2163866 R 5874 CDS TA19470 3863647 complement(join(2165344..2165467,2165498..2165649,2165727..2166410,2166478..2166658,2166688..2166845,2166878..2167021,2167051..2167869,2167900..2168122,2168154..2168292,2168348..2168591)) 1 1 NC_011129.2 pp1-like protein serine/threonine phosphatase, putative 2168591 3863647 TA19470 Theileria annulata pp1-like protein serine/threonine phosphatase, putative XP_954504.1 2165344 R 5874 CDS TA19465 3863646 complement(join(2168992..2169890,2169921..2170044,2170076..2170161,2170191..2170277,2170311..2171958,2172019..2172165,2172250..2172291)) 1 1 NC_011129.2 Weak SMART hit to CNH kinase domain; uncharacterized protein 2172291 3863646 TA19465 Theileria annulata uncharacterized protein XP_954505.1 2168992 R 5874 CDS TA19460 3863645 complement(join(2172434..2172597,2172632..2172909,2172917..2173029,2173071..2173258,2173301..2173373,2173405..2173551,2173588..2173668,2173699..2175501)) 1 1 NC_011129.2 Weak SMART & Pfam hit to serine-Threonine protein kinase domain at the C-terminal end of this hypothetical protein; it is possible that this coding exons may code for 2-3 separate hypothetical genes; uncharacterized protein 2175501 3863645 TA19460 Theileria annulata uncharacterized protein XP_954506.1 2172434 R 5874 CDS TA19455 3863644 complement(join(2175794..2176585,2176659..2176727)) 1 1 NC_011129.2 uncharacterized protein 2176727 3863644 TA19455 Theileria annulata uncharacterized protein XP_954507.1 2175794 R 5874 CDS TA19440 3863641 join(2177003..2177129,2177191..2177605,2177699..2179790,2179864..2180196) 1 1 NC_011129.2 Signal peptide predicted for TA19440 by SignalP 2.0 HMM (Signal peptide probability 0.882, signal anchor probability 0.027) with cleavage site probability 0.650 between residues 18 and 19; Dead/deah box RNA helicase, putative 2180196 3863641 TA19440 Theileria annulata Dead/deah box RNA helicase, putative XP_954508.1 2177003 D 5874 CDS TA19435 3863640 join(2180348..2180439,2180470..2181161,2181196..2181377,2181419..2181466,2181498..2181990,2182026..2182507,2182546..2182629) 1 1 NC_011129.2 uncharacterized protein 2182629 3863640 TA19435 Theileria annulata uncharacterized protein XP_954509.1 2180348 D 5874 CDS TA19430 3863639 join(2182834..2183022,2183057..2183299,2183329..2183391,2183444..2183530,2183560..2183746,2183776..2183840) 1 1 NC_011129.2 succinate dehydrogenase [ubiquinone] iron-sulfur protein, putative 2183840 3863639 TA19430 Theileria annulata succinate dehydrogenase [ubiquinone] iron-sulfur protein, putative XP_954510.1 2182834 D 5874 CDS TA19425 3863638 complement(join(2183934..2184077,2184108..2184232,2184272..2186015)) 1 1 NC_011129.2 Contains Bromodomain (Pfam & SMART hits); bromodomain-containing protein, putative 2186015 3863638 TA19425 Theileria annulata bromodomain-containing protein, putative XP_954511.1 2183934 R 5874 CDS TA19420 3863637 join(2186771..2186915,2186946..2187092,2187124..2187214,2187245..2187344,2187410..2187508,2187518..2187649) 1 1 NC_011129.2 uncharacterized protein 2187649 3863637 TA19420 Theileria annulata uncharacterized protein XP_954512.1 2186771 D 5874 CDS TA19415 3863636 complement(join(2187697..2187948,2187968..2188273)) 1 1 NC_011129.2 uncharacterized protein 2188273 3863636 TA19415 Theileria annulata uncharacterized protein XP_954513.1 2187697 R 5874 CDS TA19410 3864503 join(2188586..2188957,2188989..2189247,2189277..2189482,2189515..2189602,2189643..2189896) 1 1 NC_011129.2 Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA19410 by TMHMM2.0 at aa 143-165; uncharacterized protein 2189896 3864503 TA19410 Theileria annulata uncharacterized protein XP_954514.1 2188586 D 5874 CDS TA19405 3864502 complement(join(2190081..2190239,2190331..2190432,2190463..2190531,2190590..2190631,2190663..2190782,2190887..2190931,2190965..2191174,2191202..2191293,2191323..2191626,2191657..2191846,2191880..2192061)) 1 1 NC_011129.2 uncharacterized protein 2192061 3864502 TA19405 Theileria annulata uncharacterized protein XP_954515.1 2190081 R 5874 CDS TA19400 3864501 complement(join(2192315..2192413,2192452..2192694,2192724..2192896,2193028..2193111,2193142..2193199,2193229..2193324,2193356..2193454,2193555..2193739,2193770..2193998,2194030..2194240,2194320..2194351)) 1 1 NC_011129.2 Contains possible LisH-like and WD40 domains; uncharacterized protein 2194351 3864501 TA19400 Theileria annulata uncharacterized protein XP_954516.1 2192315 R 5874 CDS TA19395 3864500 join(2194790..2194960,2194994..2195086,2195134..2195209,2195248..2195477,2195509..2195610,2195642..2195914) 1 1 NC_011129.2 ATP synthase gamma chain, mitochondrial precursor, putative 2195914 3864500 TA19395 Theileria annulata ATP synthase gamma chain, mitochondrial precursor, putative XP_954517.1 2194790 D 5874 CDS TA19385 3864498 complement(2195955..2196398) 1 1 NC_011129.2 40s ribosomal protein s16, putative 2196398 3864498 TA19385 Theileria annulata 40s ribosomal protein s16, putative XP_954518.1 2195955 R 5874 CDS TA19380 3864497 2197005..2197604 1 1 NC_011129.2 60S ribosomal protein l13, putative 2197604 3864497 TA19380 Theileria annulata 60S ribosomal protein l13, putative XP_954519.1 2197005 D 5874 CDS TA19375 3864496 join(2197671..2197782,2197838..2198175) 1 1 NC_011129.2 uncharacterized protein 2198175 3864496 TA19375 Theileria annulata uncharacterized protein XP_954520.1 2197671 D 5874 CDS TA19370 3864495 join(2198288..2198311,2198372..2198416,2198486..2198584,2198614..2198706,2198736..2198777,2198822..2198967,2199032..2199161,2199240..2199299) 1 1 NC_011129.2 Several FATSA hits to possible GTP-binding proteins; GTP-binding protein, putative 2199299 3864495 TA19370 Theileria annulata GTP-binding protein, putative XP_954521.1 2198288 D 5874 CDS TA19365 3864494 complement(join(2199619..2200878,2200915..2200994,2201028..2201124)) 1 1 NC_011129.2 Contains a putative signal sequence; Signal peptide predicted for TA19365 by SignalP 2.0 HMM (Signal peptide probability 0.954, signal anchor probability 0.000) with cleavage site probability 0.933 between residues 22 and 23; uncharacterized protein 2201124 3864494 TA19365 Theileria annulata uncharacterized protein XP_954522.1 2199619 R 5874 CDS TA19360 3864493 join(2201632..2202603,2202633..2202781,2202812..2203042,2203137..2203407) 1 1 NC_011129.2 Contains 1 putative transmembrane domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA19360 by TMHMM2.0 at aa 12-34; Signal anchor predicted for TA19360 by SignalP 2.0 HMM (Signal peptide probability 0.097, signal anchor probability 0.841) with cleavage site probability 0.069 between residues 30 and 31; uncharacterized protein 2203407 3864493 TA19360 Theileria annulata uncharacterized protein XP_954523.1 2201632 D 5874 CDS TA19355 3864492 2203791..2205407 1 1 NC_011129.2 Contains significant SMART hit to actin domain; actin-related protein, putative 2205407 3864492 TA19355 Theileria annulata actin-related protein, putative XP_954524.1 2203791 D 5874 CDS TA19350 3864491 join(2205660..2205890,2205923..2205967,2205998..2206255,2206284..2206509,2206541..2206741,2206774..2206902,2206932..2207016,2207046..2207202) 1 1 NC_011129.2 6-phosphogluconate dehydrogenase, putative 2207202 3864491 TA19350 Theileria annulata 6-phosphogluconate dehydrogenase, putative XP_954525.1 2205660 D 5874 CDS TA19345 3864490 join(2207480..2207929,2208040..2208375) 1 1 NC_011129.2 Contains siginifant hit(3.8e-38) to Pfam N-terminal NifU-like domain (ExonII) and moderate Pfam hit (5.6e-04) to RNAse_P_Rpp14 domain (ExonI); it is possible that the 2 exons code for 2 separate proteins: the exonI containing gene codes for a RNAseP-related protein and the Exon II containing gene codes for a NifU-like protein (appropriate gene models for such a case are indicated as misc. features; however, in that circumstances, there will be a 4 bp overlap between the end & beginning of the 2 adjacent genes!); RNaseP-like protein with Nifu domain, putative 2208375 3864490 TA19345 Theileria annulata RNaseP-like protein with Nifu domain, putative XP_954526.1 2207480 D 5874 CDS TA19340 3864489 join(2208675..2208767,2208801..2209141,2209256..2209484) 1 1 NC_011129.2 The amino acid residues that have been shown to be important for cyclosporin-binding (Berriman et al 1998; PMID:9716503) are not conserved in this cyclophilin; thus no EC number was not assigned at the time of annotation; if it was enzymatically active then the designated EC_number would have been 5.2.1.8; peptidyl-prolyl cis-trans isomerase, putative 2209484 3864489 TA19340 Theileria annulata peptidyl-prolyl cis-trans isomerase, putative XP_954527.1 2208675 D 5874 CDS TA19325 3864487 join(2210314..2210440,2210511..2210708,2210742..2211430) 1 1 NC_011129.2 uncharacterized protein 2211430 3864487 TA19325 Theileria annulata uncharacterized protein XP_954528.1 2210314 D 5874 CDS TA19320 3864486 join(2211506..2211614,2211827..2212551) 1 1 NC_011129.2 Signal peptide predicted for TA19320 by SignalP 2.0 HMM (Signal peptide probability 0.918, signal anchor probability 0.027) with cleavage site probability 0.321 between residues 27 and 28; prohibitin, putative 2212551 3864486 TA19320 Theileria annulata prohibitin, putative XP_954529.1 2211506 D 5874 CDS TA19315 3864485 complement(join(2212708..2213019,2213115..2213441)) 1 1 NC_011129.2 proteasome subunit beta type 2, putative 2213441 3864485 TA19315 Theileria annulata proteasome subunit beta type 2, putative XP_954530.1 2212708 R 5874 CDS TA19310 3864484 join(2213941..2214052,2214174..2214911,2215045..2215207,2215274..2215357,2215398..2215524,2215591..2215725,2215847..2216122,2216152..2216344,2216525..2216582,2216614..2216754,2216888..2217134) 1 1 NC_011129.2 uncharacterized protein 2217134 3864484 TA19310 Theileria annulata uncharacterized protein XP_954531.1 2213941 D 5874 CDS TA19305 3864483 join(2217345..2217377,2217411..2217653,2217826..2220097,2220184..2220714,2220837..2220961,2221115..2221227,2221347..2221676,2221911..2222103) 1 1 NC_011129.2 DNA mismatch repair protein, MutS family, putative 2222103 3864483 TA19305 Theileria annulata DNA mismatch repair protein, MutS family, putative XP_954532.1 2217345 D 5874 CDS TA19300 3864482 2222452..2223084 1 1 NC_011129.2 putative u3 small nucleolar RNA-associated protein 11, putative 2223084 3864482 TA19300 Theileria annulata putative u3 small nucleolar RNA-associated protein 11, putative XP_954533.1 2222452 D 5874 CDS TA19295 3864481 complement(join(2223284..2223354,2223384..2223483,2223588..2223677,2223730..2223792,2223857..2223925,2224013..2224040,2224091..2224197,2224296..2224337,2224519..2224576,2224666..2224742)) 1 1 NC_011129.2 uncharacterized protein 2224742 3864481 TA19295 Theileria annulata uncharacterized protein XP_954534.1 2223284 R 5874 CDS TA19290 3864480 join(2224793..2224845,2224959..2225026,2225207..2225311,2225524..2225978) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19290 by TMHMM2.0 at aa 10-32; uncharacterized protein 2225978 3864480 TA19290 Theileria annulata uncharacterized protein XP_954535.1 2224793 D 5874 CDS TA19285 3864479 2226087..2226791 1 1 NC_011129.2 30s ribosomal protein s11, putative 2226791 3864479 TA19285 Theileria annulata 30s ribosomal protein s11, putative XP_954536.1 2226087 D 5874 CDS TA19275 3864477 complement(2226919..2229303) 1 1 NC_011129.2 Contains a putative signal sequence; Signal peptide predicted for TA19275 by SignalP 2.0 HMM (Signal peptide probability 0.989, signal anchor probability 0.000) with cleavage site probability 0.731 between residues 21 and 22; uncharacterized protein 2229303 3864477 TA19275 Theileria annulata uncharacterized protein XP_954537.1 2226919 R 5874 CDS TA19270 3864476 complement(2229928..2230713) 1 1 NC_011129.2 Predominantly plant-type 2-cys peroxiredoxin; 2-cys peroxiredoxin, putative 2230713 3864476 TA19270 Theileria annulata 2-cys peroxiredoxin, putative XP_954538.1 2229928 R 5874 CDS TA19265 3864475 complement(join(2230906..2230986,2231100..2231258,2231326..2231529,2231721..2231834,2231906..2232103)) 1 1 NC_011129.2 5 probable transmembrane helices predicted for TA19265 by TMHMM2.0 at aa 34-56, 63-85, 100-122, 129-151 and 171-193; uncharacterized protein 2232103 3864475 TA19265 Theileria annulata uncharacterized protein XP_954539.1 2230906 R 5874 CDS TA19255 3864474 complement(join(2233016..2233242,2233324..2233396,2233456..2233611)) 1 1 NC_011129.2 Signal peptide predicted for TA19255 by SignalP 2.0 HMM (Signal peptide probability 0.741, signal anchor probability 0.166) with cleavage site probability 0.553 between residues 26 and 27; uncharacterized protein 2233611 3864474 TA19255 Theileria annulata uncharacterized protein XP_954540.1 2233016 R 5874 CDS TA19250 3864473 join(2233797..2233900,2233957..2234060,2234217..2234346,2234550..2234664) 1 1 NC_011129.2 adrenodoxin-like ferredoxin, putative 2234664 3864473 TA19250 Theileria annulata adrenodoxin-like ferredoxin, putative XP_954541.1 2233797 D 5874 CDS TA19245 3864472 complement(join(2234911..2235065,2235176..2235197,2235229..2235320,2235387..2235516)) 1 1 NC_011129.2 Signal peptide predicted for TA19245 by SignalP 2.0 HMM (Signal peptide probability 0.946, signal anchor probability 0.000) with cleavage site probability 0.841 between residues 19 and 20; uncharacterized protein 2235516 3864472 TA19245 Theileria annulata uncharacterized protein XP_954542.1 2234911 R 5874 CDS TA19240 3864471 join(2235657..2236501,2236573..2236942) 1 1 NC_011129.2 type ii proteins geranylgeranyltransferase beta subunit, putative 2236942 3864471 TA19240 Theileria annulata type ii proteins geranylgeranyltransferase beta subunit, putative XP_954543.1 2235657 D 5874 CDS TA19235 3864470 complement(join(2237020..2237121,2237170..2237257,2237351..2239692,2239807..2240282,2240357..2240444,2240599..2240899,2241023..2241345)) 1 1 NC_011129.2 13 probable transmembrane helices predicted for TA19235 by TMHMM2.0 at aa 9-31, 597-619, 632-654, 699-721, 783-805, 837-856, 877-899, 933-955, 972-994, 1009-1028, 1105-1127, 1171-1193 and 1216-1238; Signal anchor predicted for TA19235 by SignalP 2.0 HMM (Signal peptide probability 0.125, signal anchor probability 0.861) with cleavage site probability 0.032 between residues 30 and 31; integral membrane protein, putative 2241345 3864470 TA19235 Theileria annulata integral membrane protein, putative XP_954544.1 2237020 R 5874 CDS TA19230 3864469 join(2241573..2241751,2241853..2242015) 1 1 NC_011129.2 Signal peptide predicted for TA19230 by SignalP 2.0 HMM (Signal peptide probability 0.784, signal anchor probability 0.000) with cleavage site probability 0.297 between residues 19 and 20; uncharacterized protein 2242015 3864469 TA19230 Theileria annulata uncharacterized protein XP_954545.1 2241573 D 5874 CDS TA19225 3864468 join(2242166..2242495,2242639..2242760,2242809..2244330) 1 1 NC_011129.2 translation initiation factor eif-2b epsilon subunit, putative 2244330 3864468 TA19225 Theileria annulata translation initiation factor eif-2b epsilon subunit, putative XP_954546.1 2242166 D 5874 CDS TA19220 3864467 join(2244495..2244557,2244638..2244775,2244892..2245031,2245140..2245461,2245536..2245655,2245819..2246192,2246232..2246447,2246604..2247236,2247348..2247450) 1 1 NC_011129.2 prolyl-trna synthetase, putative 2247450 3864467 TA19220 Theileria annulata prolyl-trna synthetase, putative XP_954547.1 2244495 D 5874 CDS TA19215 3864466 complement(join(2247489..2247608,2247795..2249066,2249215..2249232,2249311..2249520)) 1 1 NC_011129.2 10 probable transmembrane helices predicted for TA19215 by TMHMM2.0 at aa 7-29, 94-116, 137-159, 169-188, 193-212, 216-238, 327-349, 359-378, 431-453 and 468-490; integral membrane protein, putative 2249520 3864466 TA19215 Theileria annulata integral membrane protein, putative XP_954548.1 2247489 R 5874 CDS TA19210 3864465 join(2249803..2249901,2249967..2249984,2250172..2250223,2250439..2250615,2250760..2250945,2251017..2251307,2251443..2251520,2251589..2252421,2252495..2253322,2253417..2253701,2253798..2253995,2254135..2254243,2254342..2254529) 1 1 NC_011129.2 Weak similarity (4.5e-04)to Pfam & SMART MACPF (membrane attack complex perforin function); contains a putative signal sequence; alternative gene emodel possible; existence of the first three exons uncertain; uncharacterized protein 2254529 3864465 TA19210 Theileria annulata uncharacterized protein XP_954549.1 2249803 D 5874 CDS TA19205 3863791 complement(join(2254679..2254800,2254831..2254918,2255064..2255243)) 1 1 NC_011129.2 signal recognition particle, putative 2255243 3863791 TA19205 Theileria annulata signal recognition particle, putative XP_954550.1 2254679 R 5874 CDS TA19200 3863790 complement(join(2255389..2255450,2255491..2255534,2255584..2255692,2255735..2255774,2255828..2255920,2255951..2256001,2256096..2256157,2256189..2256253,2256275..2256312)) 1 1 NC_011129.2 Contains a putative signal peptide; uncharacterized protein 2256312 3863790 TA19200 Theileria annulata uncharacterized protein XP_954551.1 2255389 R 5874 CDS TA19195 3863789 complement(join(2256544..2256719,2256791..2257468,2257511..2258251,2258286..2258445)) 1 1 NC_011129.2 The intron between ExonII & ExonIII is unsure; alternative gene model possible; 1 probable transmembrane helix predicted for TA19195 by TMHMM2.0 at aa 2-24; Signal peptide predicted for TA19195 by SignalP 2.0 HMM (Signal peptide probability 0.948, signal anchor probability 0.002) with cleavage site probability 0.552 between residues 20 and 21; seryl-trna synthetase, putative 2258445 3863789 TA19195 Theileria annulata seryl-trna synthetase, putative XP_954552.1 2256544 R 5874 CDS TA19190 3863788 2258656..2260440 1 1 NC_011129.2 Contains repeats; uncharacterized protein 2260440 3863788 TA19190 Theileria annulata uncharacterized protein XP_954553.1 2258656 D 5874 CDS TA19185 3863787 complement(join(2260513..2260584,2260631..2260768,2260798..2260836,2260868..2260889,2260974..2261068,2261131..2261206,2261230..2261270)) 1 1 NC_011129.2 uncharacterized protein 2261270 3863787 TA19185 Theileria annulata uncharacterized protein XP_954554.1 2260513 R 5874 CDS TA19180 3863786 join(2261624..2261912,2262045..2262335,2262509..2262605,2262681..2262859,2263052..2263120,2263171..2263442) 1 1 NC_011129.2 MORM repeat family protein, putative 2263442 3863786 TA19180 Theileria annulata MORM repeat family protein, putative XP_954555.1 2261624 D 5874 CDS TA19165 3863783 complement(join(2263603..2265664,2265785..2266146)) 1 1 NC_011129.2 uncharacterized protein 2266146 3863783 TA19165 Theileria annulata uncharacterized protein XP_954556.1 2263603 R 5874 CDS TA19160 3863782 join(2267133..2267318,2267423..2267530,2267600..2268322) 1 1 NC_011129.2 Annotation is based on significant Pfam & SMART hits to UBX & UAS domains; Ubiquitin regulatory protein, putative 2268322 3863782 TA19160 Theileria annulata Ubiquitin regulatory protein, putative XP_954557.1 2267133 D 5874 CDS TA19155 3863781 join(2268651..2268792,2268991..2269311,2269341..2269745,2269981..2270611,2270701..2271535,2271624..2271974) 1 1 NC_011129.2 rad3-like DNA helicase-related, putative 2271974 3863781 TA19155 Theileria annulata rad3-like DNA helicase-related, putative XP_954558.1 2268651 D 5874 CDS TA19150 3863780 complement(join(2272399..2273954,2274051..2274966)) 1 1 NC_011129.2 uncharacterized protein 2274966 3863780 TA19150 Theileria annulata uncharacterized protein XP_954559.1 2272399 R 5874 CDS TA19145 3863779 complement(join(2275304..2277843,2277891..2278098)) 1 1 NC_011129.2 uncharacterized protein 2278098 3863779 TA19145 Theileria annulata uncharacterized protein XP_954560.1 2275304 R 5874 CDS TA19140 3863778 join(2278645..2279059,2279153..2279490) 1 1 NC_011129.2 uncharacterized protein 2279490 3863778 TA19140 Theileria annulata uncharacterized protein XP_954561.1 2278645 D 5874 CDS TA19135 3863777 complement(2279531..2279767) 1 1 NC_011129.2 Could a part of the previous gene; uncharacterized protein 2279767 3863777 TA19135 Theileria annulata uncharacterized protein XP_954562.1 2279531 R 5874 CDS TA19130 3863776 complement(join(2279837..2279923,2279936..2279962,2280041..2280250,2280370..2280563,2280654..2280861,2280974..2281042,2281073..2281153,2281269..2281304,2281336..2281516,2281588..2281679,2281742..2281893,2281928..2282144)) 1 1 NC_011129.2 Existence of the last 2 exons uncertain; mitochondrial processing peptidase, putative 2282144 3863776 TA19130 Theileria annulata mitochondrial processing peptidase, putative XP_954563.1 2279837 R 5874 CDS TA19125 3863775 join(2282312..2282447,2282506..2282627,2282698..2282742,2282775..2282823,2282890..2282927,2282974..2283000) 1 1 NC_011129.2 uncharacterized protein 2283000 3863775 TA19125 Theileria annulata uncharacterized protein XP_954564.1 2282312 D 5874 CDS TA19120 3863774 join(2283399..2283734,2283835..2283885) 1 1 NC_011129.2 This hypothetical protein may have 1 or more downstream exons; uncharacterized protein 2283885 3863774 TA19120 Theileria annulata uncharacterized protein XP_954565.1 2283399 D 5874 CDS TA19110 3863995 join(2285335..2285795,2285832..2286453,2286542..2286684,2286721..2286883,2286930..2287027,2287085..2287145,2287192..2287326) 1 1 NC_011129.2 serine-threonine protein kinase, putative 2287326 3863995 TA19110 Theileria annulata serine-threonine protein kinase, putative XP_954566.1 2285335 D 5874 CDS TA19100 3863994 complement(join(2287385..2287592,2287621..2287693,2287755..2287895,2287933..2288072,2288107..2288180,2288218..2288421,2288478..2288609,2288641..2288810,2288877..2289222)) 1 1 NC_011129.2 uncharacterized protein 2289222 3863994 TA19100 Theileria annulata uncharacterized protein XP_954567.1 2287385 R 5874 CDS TA19095 3863993 complement(2289267..2289983) 1 1 NC_011129.2 uncharacterized protein 2289983 3863993 TA19095 Theileria annulata uncharacterized protein XP_954568.1 2289267 R 5874 CDS TA19090 3863992 complement(join(2290254..2290409,2290449..2290690,2290750..2290907,2290970..2291110,2291140..2291252,2291282..2291530,2291589..2292017,2292087..2292530)) 1 1 NC_011129.2 ATP-dependent RNA helicase, putative 2292530 3863992 TA19090 Theileria annulata ATP-dependent RNA helicase, putative XP_954569.1 2290254 R 5874 CDS TA19085 3863991 join(2292644..2293348,2293398..2293533,2293574..2293764) 1 1 NC_011129.2 uncharacterized protein 2293764 3863991 TA19085 Theileria annulata uncharacterized protein XP_954570.1 2292644 D 5874 CDS TA19080 3863990 join(2293823..2293830,2293858..2295389,2295455..2295666) 1 1 NC_011129.2 Existence of Exon I is doubtfull; histidyl-trna synthetase, putative 2295666 3863990 TA19080 Theileria annulata histidyl-trna synthetase, putative XP_954571.1 2293823 D 5874 CDS TA19075 3863989 2296012..2299650 1 1 NC_011129.2 Contains a putative signal sequence; one small intron possible; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19075 by SignalP 2.0 HMM (Signal peptide probability 0.970, signal anchor probability 0.029) with cleavage site probability 0.650 between residues 27 and 28; uncharacterized protein 2299650 3863989 TA19075 Theileria annulata uncharacterized protein XP_954572.1 2296012 D 5874 CDS TA19070 3863988 2300059..2302491 1 1 NC_011129.2 uncharacterized protein 2302491 3863988 TA19070 Theileria annulata uncharacterized protein XP_954573.1 2300059 D 5874 CDS TA19065 3863987 complement(join(2302782..2303087,2303116..2303199,2303262..2303295,2303327..2303438,2303497..2303579,2303616..2303658,2303691..2303738,2303770..2303825,2303995..2304140,2304173..2304263,2304294..2304406)) 1 1 NC_011129.2 Contains WD40 repeat elements; chromatin assembly factor 1 protein, putative 2304406 3863987 TA19065 Theileria annulata chromatin assembly factor 1 protein, putative XP_954574.1 2302782 R 5874 CDS TA19055 3863985 complement(join(2304877..2305671,2305756..2305911,2305962..2306051)) 1 1 NC_011129.2 Contains WD40 repeat elements; SONA 2306051 3863985 TA19055 Theileria annulata SONA XP_954575.1 2304877 R 5874 CDS TA19050 3863984 complement(join(2306824..2307446,2307482..2307623)) 1 1 NC_011129.2 uncharacterized protein 2307623 3863984 TA19050 Theileria annulata uncharacterized protein XP_954576.1 2306824 R 5874 CDS TA19045 3863983 join(2307991..2308356,2308394..2308543) 1 1 NC_011129.2 Weak Pfam hit to ribosomal L32P protein family, BLAST similarities to chloroplast 50s ribosomal protein l32; however, the evidence is not strong enough to call it a ribosomal L32-related protein; Signal peptide predicted for TA19045 by SignalP 2.0 HMM (Signal peptide probability 0.817, signal anchor probability 0.000) with cleavage site probability 0.301 between residues 15 and 16; uncharacterized protein 2308543 3863983 TA19045 Theileria annulata uncharacterized protein XP_954577.1 2307991 D 5874 CDS TA19040 3863982 join(2308634..2308705,2308806..2308875,2308911..2308951,2309018..2309170,2309279..2309671) 1 1 NC_011129.2 uncharacterized protein 2309671 3863982 TA19040 Theileria annulata uncharacterized protein XP_954578.1 2308634 D 5874 CDS TA19035 3863981 complement(join(2309830..2309916,2309979..2310330,2310374..2310467,2310524..2310737,2310798..2311007)) 1 1 NC_011129.2 GTPase-activating protein, putative 2311007 3863981 TA19035 Theileria annulata GTPase-activating protein, putative XP_954579.1 2309830 R 5874 CDS TA19030 3863980 2311390..2312043 1 1 NC_011129.2 uncharacterized protein 2312043 3863980 TA19030 Theileria annulata uncharacterized protein XP_954580.1 2311390 D 5874 CDS TA19025 3863979 complement(join(2312189..2312284,2312317..2312720,2312751..2312803,2312836..2312953,2313012..2313465,2313524..2313739)) 1 1 NC_011129.2 uncharacterized protein 2313739 3863979 TA19025 Theileria annulata uncharacterized protein XP_954581.1 2312189 R 5874 CDS TA19020 3863978 2314438..2315706 1 1 NC_011129.2 Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA19020 by TMHMM2.0 at aa 13-35; uncharacterized protein 2315706 3863978 TA19020 Theileria annulata uncharacterized protein XP_954582.1 2314438 D 5874 CDS TA19015 3863977 complement(join(2315787..2315840,2315892..2315960,2316022..2317070,2317139..2317597,2317628..2317675,2317750..2318020,2318059..2318226,2318296..2318439,2318475..2318600,2318659..2318730,2318790..2318930,2318985..2319173)) 1 1 NC_011129.2 It is possible that this hypothetical protein is composed of 2 hypothetical proteins, the first 9 exons represent the first hypothetical protein and the last three exons representing the other hypothetical protein; Part of the protein is similar to Plasmodium falciparum hypothetical protein pfe1320W; uncharacterized protein 2319173 3863977 TA19015 Theileria annulata uncharacterized protein XP_954583.1 2315787 R 5874 CDS TA19010 3863976 join(2319545..2319637,2319710..2319865,2319935..2320309,2320375..2320827,2320893..2321071,2321196..2321320,2321388..2321581) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19010 by TMHMM2.0 at aa 9-31; protein disulfide isomerase precursor, putative 2321581 3863976 TA19010 Theileria annulata protein disulfide isomerase precursor, putative XP_954584.1 2319545 D 5874 CDS TA19000 3863634 complement(join(2321630..2322841,2322936..2323070,2323130..2323197,2323266..2323504,2323672..2323850)) 1 1 NC_011129.2 transcriptional adaptor2-related protein, putative 2323850 3863634 TA19000 Theileria annulata transcriptional adaptor2-related protein, putative XP_954585.1 2321630 R 5874 CDS TA18995 3863633 join(2324470..2324842,2324894..2325717,2325764..2326201) 1 1 NC_011129.2 GPI-Anchor Signal predicted for TA18995 by DGPI v2.04 with cleavage site probability 0.15599999 near 526; ubiquitin-activating enzyme e1, putative 2326201 3863633 TA18995 Theileria annulata ubiquitin-activating enzyme e1, putative XP_954586.1 2324470 D 5874 CDS TA18990 3863632 complement(join(2326222..2326353,2326400..2326585,2326655..2326848,2326899..2327077,2327154..2327316,2327378..2327591,2327668..2327867,2327948..2328203,2328269..2328384,2328425..2328827)) 1 1 NC_011129.2 The first ~150 amino acids don't show any conservedness with other DNA-directed RNA polymerase alpha chains; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA18990 by TMHMM2.0 at aa 5-24; Signal peptide predicted for TA18990 by SignalP 2.0 HMM (Signal peptide probability 0.952, signal anchor probability 0.003) with cleavage site probability 0.785 between residues 20 and 21; DNA-directed RNA polymerase alpha chain, putative 2328827 3863632 TA18990 Theileria annulata DNA-directed RNA polymerase alpha chain, putative XP_954587.1 2326222 R 5874 CDS TA18985 3863631 join(2328953..2329765,2329844..2330224,2330279..2330527,2330565..2330747,2330799..2330874,2330983..2331098) 1 1 NC_011129.2 No significant SMART / Pfam hit but hightly conserved with several other hypothetical proteins from diverse organisms, alternative gene model possible with the last exon being completely different; the first exon may code for a a seperate hypothetical protein; the conserved residues start from exon II in the present model; uncharacterized protein 2331098 3863631 TA18985 Theileria annulata uncharacterized protein XP_954588.1 2328953 D 5874 CDS TA18980 3863630 join(2332293..2332358,2332388..2332634,2332664..2332815,2332902..2333561) 1 1 NC_011129.2 uncharacterized protein 2333561 3863630 TA18980 Theileria annulata uncharacterized protein XP_954589.1 2332293 D 5874 CDS TA18975 3863629 complement(join(2334154..2334234,2334266..2334418,2334451..2334603,2334634..2334768,2334820..2335014,2335071..2335703,2335773..2335897,2335943..2336018,2336071..2336178,2336208..2336318,2336387..2336437,2336482..2336557,2336612..2337030,2337061..2337168,2337207..2337357,2337388..2337474,2337506..2337669)) 1 1 NC_011129.2 Although this protein shows FASTA and BLAST similarity to SMC proteins, there is no hit in Pfam database for SMC_N & SMC_C domains; thus this protein is annotated as possible SMC-like protein; SMC-like protein, putative 2337669 3863629 TA18975 Theileria annulata SMC-like protein, putative XP_954590.1 2334154 R 5874 CDS TA18970 3863628 complement(join(2338076..2338276,2338360..2339031,2339127..2339336,2339368..2339501,2339536..2339683,2339749..2339930,2340012..2340246,2340278..2340392,2340423..2340498,2340528..2340594)) 1 1 NC_011129.2 long-chain-fatty-acid--coa ligase, putative 2340594 3863628 TA18970 Theileria annulata long-chain-fatty-acid--coa ligase, putative XP_954591.1 2338076 R 5874 CDS TA18965 3863627 join(2341208..2341436,2341470..2341600,2341635..2341685,2341716..2341776,2341808..2341966,2341998..2342065,2342096..2342149,2342180..2342293,2342349..2342450,2342480..2342520,2342590..2342647,2342677..2342787) 1 1 NC_011129.2 10 probable transmembrane helices predicted for TA18965 by TMHMM2.0 at aa 16-38, 48-70, 91-113, 128-150, 190-212, 253-275, 280-299, 309-328, 348-362 and 367-389; Signal anchor predicted for TA18965 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.988) with cleavage site probability 0.004 between residues 32 and 33; GPI-Anchor Signal predicted for TA18965 by DGPI v2.04 with cleavage site probability 0.12900001 near 370; udp-N-acetylglucosamine--dolichyl-phosphate n-acetylglucosaminephosphotransferase, putative 2342787 3863627 TA18965 Theileria annulata udp-N-acetylglucosamine--dolichyl-phosphate n-acetylglucosaminephosphotransferase, putative XP_954592.1 2341208 D 5874 CDS TA18960 3863626 join(2342953..2345887,2345932..2346077,2346169..2346237) 1 1 NC_011129.2 Weak Pfam hit to lactamase_B (Metallo beta lactamase superfamily); uncharacterized protein 2346237 3863626 TA18960 Theileria annulata uncharacterized protein XP_954593.1 2342953 D 5874 CDS TA18955 3863625 complement(join(2346422..2346526,2346556..2346622,2346652..2346706,2346735..2346792,2346862..2346929,2346964..2347123,2347153..2347395,2347459..2347763,2347791..2347983)) 1 1 NC_011129.2 Shows moderate similarities to human / mouse immunoglobulin-binding protein 1 but does not show any Pfam hit; uncharacterized protein 2347983 3863625 TA18955 Theileria annulata uncharacterized protein XP_954594.1 2346422 R 5874 CDS TA18945 3863623 join(2348108..2348160,2348304..2348679) 1 1 NC_011129.2 peptidylprolyl isomerase, putative 2348679 3863623 TA18945 Theileria annulata peptidylprolyl isomerase, putative XP_954595.1 2348108 D 5874 CDS TA18940 3863622 complement(join(2348737..2348782,2348814..2348857,2348888..2349082,2349135..2349248,2349302..2349397,2349439..2349607,2349681..2349844,2349875..2350216)) 1 1 NC_011129.2 Strong Pfam hit to methyltransf_5 (MraW methylase family); s-adenosyl-methyltransferase, putative 2350216 3863622 TA18940 Theileria annulata s-adenosyl-methyltransferase, putative XP_954596.1 2348737 R 5874 CDS TA18935 3863621 join(2350375..2350524,2350595..2350837) 1 1 NC_011129.2 Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA18935 by TMHMM2.0 at aa 13-30 and 70-89; uncharacterized protein 2350837 3863621 TA18935 Theileria annulata uncharacterized protein XP_954597.1 2350375 D 5874 CDS TA18930 3863620 2351182..2354193 1 1 NC_011129.2 One intron possible; uncharacterized protein 2354193 3863620 TA18930 Theileria annulata uncharacterized protein XP_954598.1 2351182 D 5874 CDS TA18925 3863619 complement(join(2354515..2357510,2357622..2357658)) 1 1 NC_011129.2 uncharacterized protein 2357658 3863619 TA18925 Theileria annulata uncharacterized protein XP_954599.1 2354515 R 5874 CDS TA18920 3863618 join(2358117..2358221,2358258..2358329,2358414..2358496,2358581..2358833,2358927..2359016,2359051..2359317,2359369..2359437) 1 1 NC_011129.2 uncharacterized protein 2359437 3863618 TA18920 Theileria annulata uncharacterized protein XP_954600.1 2358117 D 5874 CDS TA18915 3863617 join(2359666..2359801,2359887..2359957,2360037..2360144) 1 1 NC_011129.2 uncharacterized protein 2360144 3863617 TA18915 Theileria annulata uncharacterized protein XP_954601.1 2359666 D 5874 CDS TA18910 3864327 join(2360611..2360689,2360721..2360781,2360867..2360957,2360987..2361076,2361107..2361187,2361244..2361364,2361428..2361528,2361576..2361707) 1 1 NC_011129.2 One or two additional N-terminal exons possible; uncharacterized protein 2361707 3864327 TA18910 Theileria annulata uncharacterized protein XP_954602.1 2360611 D 5874 CDS TA18905 3864326 complement(join(2361741..2361784,2361822..2361870,2361984..2362024,2362056..2362161,2362206..2362278,2362334..2362574,2362645..2363081,2363131..2363252,2363310..2363435)) 1 1 NC_011129.2 Weak SMART hit to KOW (Kyprides, Ouzounis, Woese) motif; uncharacterized protein 2363435 3864326 TA18905 Theileria annulata uncharacterized protein XP_954603.1 2361741 R 5874 CDS TA18900 3864325 join(2363813..2364013,2364046..2364545,2364591..2365539) 1 1 NC_011129.2 uncharacterized protein 2365539 3864325 TA18900 Theileria annulata uncharacterized protein XP_954604.1 2363813 D 5874 CDS TA20080 3864461 join(2365933..2366040,2366102..2366153,2366210..2366337,2366415..2366552,2366612..2366737,2366790..2366882) 1 1 NC_011129.2 Contains 1 putative transmembrane domain; uncharacterized protein 2366882 3864461 TA20080 Theileria annulata uncharacterized protein XP_954605.1 2365933 D 5874 CDS TA20075 3864460 complement(join(2367076..2367188,2367254..2367319,2367351..2367443,2367474..2367626,2367712..2368144)) 1 1 NC_011129.2 No Pfam hit; So annotated as cytochrome c oxidase assembly protein-like, based on FASTA and BLAST similarities; 1 probable transmembrane helix predicted for TA20075 by TMHMM2.0 at aa 98-120; cytochrome c oxidase assembly protein-like, putative 2368144 3864460 TA20075 Theileria annulata cytochrome c oxidase assembly protein-like, putative XP_954606.1 2367076 R 5874 CDS TA20070 3864459 complement(join(2368501..2368672,2368766..2369232,2369306..2369608,2369665..2370092,2370152..2370640,2370754..2371006)) 1 1 NC_011129.2 Alternative gene model possible, no hit to SMART / Pfam domains; ATP-dependent RNA helicase-related protein, putative 2371006 3864459 TA20070 Theileria annulata ATP-dependent RNA helicase-related protein, putative XP_954607.1 2368501 R 5874 CDS TA20065 3864458 complement(join(2371349..2371475,2371563..2371713,2371766..2371907,2371993..2372103)) 1 1 NC_011129.2 Moderate hit to Pfam DUF232 domain; prefoldin-like protein, putative 2372103 3864458 TA20065 Theileria annulata prefoldin-like protein, putative XP_954608.1 2371349 R 5874 CDS TA20060 3864457 complement(2372231..2373364) 1 1 NC_011129.2 fructose-bisphosphate aldolase 2, putative 2373364 3864457 TA20060 Theileria annulata fructose-bisphosphate aldolase 2, putative XP_954609.1 2372231 R 5874 CDS TA20055 3864456 complement(2373831..2375954) 1 1 NC_011129.2 No SMART / Pfam hit; similarities to methyl transferases and shk1 kinase-binding protein 1 from human and shk1 kinase-binding protein from S. pombe; methyl transferase-like protein, putative 2375954 3864456 TA20055 Theileria annulata methyl transferase-like protein, putative XP_954610.1 2373831 R 5874 CDS TA20050 3864455 join(2376580..2376766,2376796..2376852,2376921..2377094,2377146..2377382,2377430..2377797,2377858..2378052,2378098..2378166,2378236..2378542,2378614..2378874,2378937..2379407,2379472..2379863) 1 1 NC_011129.2 Weak hit to von Willebrand Factor type A domain; protein transport protein sec24-like, putative 2379863 3864455 TA20050 Theileria annulata protein transport protein sec24-like, putative XP_954611.1 2376580 D 5874 CDS TA20045 3864454 2380263..2382629 1 1 NC_011129.2 uncharacterized protein 2382629 3864454 TA20045 Theileria annulata uncharacterized protein XP_954612.1 2380263 D 5874 CDS TA20040 3864453 join(2382698..2382793,2382825..2382888,2382981..2383043,2383079..2383117,2383148..2383180,2383240..2383284,2383361..2383452) 1 1 NC_011129.2 Contains 2 putative transmembrane domains and a putative signal peptide; 3 probable transmembrane helices predicted for TA20040 by TMHMM2.0 at aa 13-32, 47-69 and 90-109; Signal anchor predicted for TA20040 by SignalP 2.0 HMM (Signal peptide probability 0.314, signal anchor probability 0.675) with cleavage site probability 0.166 between residues 33 and 34; uncharacterized protein 2383452 3864453 TA20040 Theileria annulata uncharacterized protein XP_954613.1 2382698 D 5874 CDS TA20035 3864452 join(2383714..2383833,2383866..2383923,2383953..2384263,2384331..2384384,2384468..2384619,2384693..2384803,2384885..2385650) 1 1 NC_011129.2 Contains two putative transmembrane domains; 2 probable transmembrane helices predicted for TA20035 by TMHMM2.0 at aa 219-241 and 271-290; uncharacterized protein 2385650 3864452 TA20035 Theileria annulata uncharacterized protein XP_954614.1 2383714 D 5874 CDS TA20030 3864451 complement(2385809..2386327) 1 1 NC_011129.2 Contains conserved C-terminus; SMART; uncharacterized protein 2386327 3864451 TA20030 Theileria annulata uncharacterized protein XP_954615.1 2385809 R 5874 CDS TA20025 3864450 2386811..2387599 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA20025 by TMHMM2.0 at aa 210-232; cytochrome c oxidase subunit 2a, putative 2387599 3864450 TA20025 Theileria annulata cytochrome c oxidase subunit 2a, putative XP_954616.1 2386811 D 5874 CDS TA20020 3864449 join(2388232..2391112,2391177..2394064,2394143..2394725,2394795..2395415,2395637..2396092,2396165..2396649) 1 1 NC_011129.2 uncharacterized protein 2396649 3864449 TA20020 Theileria annulata uncharacterized protein XP_954617.1 2388232 D 5874 CDS TA20015 3864448 complement(join(2396802..2396996,2397046..2397252,2397287..2397450,2397530..2397880,2398071..2398198,2398244..2398461,2398492..2398575)) 1 1 NC_011129.2 No Pfam or SMART or TIGRfam hits; so annotated as polynucleotide kinase 3'-phosphatase-like protein, based on the FASTA and BLAST evidence; polynucleotide kinase 3'-phosphatase-like protein, putative 2398575 3864448 TA20015 Theileria annulata polynucleotide kinase 3'-phosphatase-like protein, putative XP_954618.1 2396802 R 5874 CDS TA20010 3864447 join(2398834..2400044,2400134..2401427) 1 1 NC_011129.2 uncharacterized protein 2401427 3864447 TA20010 Theileria annulata uncharacterized protein XP_954619.1 2398834 D 5874 CDS TA20005 3864446 complement(join(2401919..2402107,2402219..2403359,2403400..2403500,2403549..2403726,2403799..2404670)) 1 1 NC_011129.2 Contains RNA-binding HAT (Half A TPR) repeat units, found in RNA-processing proteins; rna-processing protein, putative 2404670 3864446 TA20005 Theileria annulata rna-processing protein, putative XP_954620.1 2401919 R 5874 CDS TA20000 3864445 join(2405035..2405317,2405422..2405718,2405796..2405980) 1 1 NC_011129.2 Contains hits to Pfam RRM and WW domains; rna-binding protein, putative 2405980 3864445 TA20000 Theileria annulata rna-binding protein, putative XP_954621.1 2405035 D 5874 CDS TA19995 3864169 complement(join(2406192..2406464,2406498..2406583,2406613..2406700,2406768..2406833,2406863..2406924,2406964..2407057)) 1 1 NC_011129.2 Very wqeak similarity to t-SNARE SMART domain, contains a putative transmembrane domain; 1 probable transmembrane helix predicted for TA19995 by TMHMM2.0 at aa 192-214; vesicle transport protein, putative 2407057 3864169 TA19995 Theileria annulata vesicle transport protein, putative XP_954622.1 2406192 R 5874 CDS TA19990 3864168 join(2408217..2409020,2409086..2410342) 1 1 NC_011129.2 protein phosphatase 2A regulatory subunit B, putative 2410342 3864168 TA19990 Theileria annulata protein phosphatase 2A regulatory subunit B, putative XP_954623.1 2408217 D 5874 CDS TA19985 3864167 join(2410677..2411084,2411138..2411281,2411358..2411504) 1 1 NC_011129.2 uncharacterized protein 2411504 3864167 TA19985 Theileria annulata uncharacterized protein XP_954624.1 2410677 D 5874 CDS TA19980 3864166 complement(join(2411556..2411698,2411738..2411854,2411892..2412138)) 1 1 NC_011129.2 uncharacterized protein 2412138 3864166 TA19980 Theileria annulata uncharacterized protein XP_954625.1 2411556 R 5874 CDS TA19975 3864165 2412782..2413873 1 1 NC_011129.2 Contains putative three transmembrane domains, moderatly similar to C-terminal half of P. falciparum hypothetical protein mal6p1.308; 3 probable transmembrane helices predicted for TA19975 by TMHMM2.0 at aa 233-255, 267-289 and 309-328; integral membrane protein, putative 2413873 3864165 TA19975 Theileria annulata integral membrane protein, putative XP_954626.1 2412782 D 5874 CDS TA19970 3864164 complement(join(2413933..2414120,2414153..2414242,2414279..2414330)) 1 1 NC_011129.2 uncharacterized protein 2414330 3864164 TA19970 Theileria annulata uncharacterized protein XP_954627.1 2413933 R 5874 CDS TA19965 3864163 join(2415551..2415682,2415717..2416708,2416748..2420265,2420300..2420409,2420443..2420738,2420789..2420951) 1 1 NC_011129.2 ubiquitin-related protein, putative 2420951 3864163 TA19965 Theileria annulata ubiquitin-related protein, putative XP_954628.1 2415551 D 5874 CDS TA19960 3864162 complement(join(2421125..2421288,2421328..2421465,2421531..2421795)) 1 1 NC_011129.2 Weak BLAST similarity to Homo sapiens general transcription factor ii-i; uncharacterized protein 2421795 3864162 TA19960 Theileria annulata uncharacterized protein XP_954629.1 2421125 R 5874 CDS TA19955 3864161 join(2422006..2422618,2422648..2422725,2422763..2422864,2422917..2423104,2423161..2423223,2423296..2423587,2423641..2424308) 1 1 NC_011129.2 Weak Pfam hit to Nol1_Nop2_SUN family; methyl transferase, putative 2424308 3864161 TA19955 Theileria annulata methyl transferase, putative XP_954630.1 2422006 D 5874 CDS TA19950 3864160 complement(join(2424346..2424626,2424701..2424806,2424852..2425019)) 1 1 NC_011129.2 uncharacterized protein 2425019 3864160 TA19950 Theileria annulata uncharacterized protein XP_954631.1 2424346 R 5874 CDS TA19945 3864159 complement(2425160..2427892) 1 1 NC_011129.2 uncharacterized protein 2427892 3864159 TA19945 Theileria annulata uncharacterized protein XP_954632.1 2425160 R 5874 CDS TA19940 3864158 join(2428153..2428398,2428437..2428713,2428750..2428844) 1 1 NC_011129.2 orotate phosphoribosyltransferase, putative 2428844 3864158 TA19940 Theileria annulata orotate phosphoribosyltransferase, putative XP_954633.1 2428153 D 5874 CDS TA19935 3864157 complement(join(2428901..2429069,2429140..2430091,2430174..2431674)) 1 1 NC_011129.2 importin beta-1 subunit, putative 2431674 3864157 TA19935 Theileria annulata importin beta-1 subunit, putative XP_954634.1 2428901 R 5874 CDS TA19930 3864156 join(2432934..2432950,2432982..2433165) 1 1 NC_011129.2 Alternative first exon possible; Signal peptide predicted for TA19930 by SignalP 2.0 HMM (Signal peptide probability 0.897, signal anchor probability 0.000) with cleavage site probability 0.536 between residues 26 and 27; uncharacterized protein 2433165 3864156 TA19930 Theileria annulata uncharacterized protein XP_954635.1 2432934 D 5874 CDS TA19925 3864155 complement(join(2433367..2433759,2433814..2433968,2433997..2434134,2434197..2434310,2434341..2434408,2434475..2434609,2434679..2434982,2435013..2435198,2435228..2435378,2435425..2435549,2435588..2435702,2435746..2435991)) 1 1 NC_011129.2 Jumonji family zinc finger protein, putative 2435991 3864155 TA19925 Theileria annulata Jumonji family zinc finger protein, putative XP_954636.1 2433367 R 5874 CDS TA19920 3864154 complement(2437801..2440293) 1 1 NC_011129.2 uncharacterized protein 2440293 3864154 TA19920 Theileria annulata uncharacterized protein XP_954637.1 2437801 R 5874 CDS TA19915 3864153 complement(join(2441028..2441284,2441378..2441469,2441484..2441497)) 1 1 NC_011129.2 GPI-Anchor Signal predicted for TA19915 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 2441497 3864153 TA19915 Theileria annulata uncharacterized protein XP_954638.1 2441028 R 5874 CDS TA19910 3864152 complement(2441641..2441910) 1 1 NC_011129.2 acyl-coa-binding protein, putative 2441910 3864152 TA19910 Theileria annulata acyl-coa-binding protein, putative XP_954639.1 2441641 R 5874 CDS TA19905 3864151 complement(join(2442099..2442295,2442331..2442436)) 1 1 NC_011129.2 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19905 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.664 between residues 18 and 19; 50s ribosomal protein l33, putative 2442436 3864151 TA19905 Theileria annulata 50s ribosomal protein l33, putative XP_954640.1 2442099 R 5874 CDS TA19900 3864386 join(2442599..2443022,2443055..2443117,2443194..2443252,2443283..2443367,2443399..2443523,2443555..2443641,2443677..2443991,2444032..2444142,2444174..2444243,2444313..2444377,2444408..2444510,2444568..2444626,2444657..2444827) 1 1 NC_011129.2 ABC1 family protein, putative 2444827 3864386 TA19900 Theileria annulata ABC1 family protein, putative XP_954641.1 2442599 D 5874 CDS TA19895 3864385 complement(join(2444947..2445093,2445128..2445281,2445331..2445463,2445526..2445851,2445884..2446010,2446040..2446172)) 1 1 NC_011129.2 protein phosphatase 2c, putative 2446172 3864385 TA19895 Theileria annulata protein phosphatase 2c, putative XP_954642.1 2444947 R 5874 CDS TA19890 3864384 complement(join(2446260..2446432,2446514..2446811,2446847..2447149,2447180..2447259,2447296..2447450,2447484..2447637,2447679..2447880)) 1 1 NC_011129.2 uncharacterized protein 2447880 3864384 TA19890 Theileria annulata uncharacterized protein XP_954643.1 2446260 R 5874 CDS TA19885 3864383 join(2448095..2448415,2448451..2448582) 1 1 NC_011129.2 Moderate Pfam hit to NifU-like domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19885 by SignalP 2.0 HMM (Signal peptide probability 0.971, signal anchor probability 0.000) with cleavage site probability 0.863 between residues 17 and 18; Nifu-like protein, putative 2448582 3864383 TA19885 Theileria annulata Nifu-like protein, putative XP_954644.1 2448095 D 5874 CDS TA19880 3864382 complement(join(2448633..2449091,2449120..2449357,2449391..2449593,2449623..2449724,2449760..2449847,2449890..2449991,2450021..2450223)) 1 1 NC_011129.2 uncharacterized protein 2450223 3864382 TA19880 Theileria annulata uncharacterized protein XP_954645.1 2448633 R 5874 CDS TA19875 3864381 join(2450418..2450685,2450755..2450877,2450911..2452556,2452590..2453747) 1 1 NC_011129.2 uncharacterized protein 2453747 3864381 TA19875 Theileria annulata uncharacterized protein XP_954646.1 2450418 D 5874 CDS TA19870 3864380 complement(join(2453840..2453950,2453972..2454247,2454280..2454729)) 1 1 NC_011129.2 Contains putative signal peptide; 1 probable transmembrane helix predicted for TA19870 by TMHMM2.0 at aa 7-29; uncharacterized protein 2454729 3864380 TA19870 Theileria annulata uncharacterized protein XP_954647.1 2453840 R 5874 CDS TA19865 3864379 complement(2455778..2456314) 1 1 NC_011129.2 Signal peptide predicted for TA19865 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.024) with cleavage site probability 0.890 between residues 23 and 24; surface protein d precursor 2456314 3864379 TA19865 Theileria annulata surface protein d precursor XP_954648.1 2455778 R 5874 CDS TA19860 3864378 join(2457168..2457357,2457392..2457449,2457490..2457651,2457684..2457783,2457816..2457930,2457962..2458047,2458080..2458268,2458299..2458480,2458514..2458751,2458785..2458900,2458931..2459000) 1 1 NC_011129.2 DEAD box RNA helicase, putative 2459000 3864378 TA19860 Theileria annulata DEAD box RNA helicase, putative XP_954649.1 2457168 D 5874 CDS TA19855 3864377 join(2459059..2459274,2459310..2459418,2459462..2459538,2459570..2459635,2459666..2460004,2460033..2460088,2460120..2460202,2460233..2460371,2460416..2460726,2460760..2460817,2460920..2461051,2461082..2461148) 1 1 NC_011129.2 GTPase, putative 2461148 3864377 TA19855 Theileria annulata GTPase, putative XP_954650.1 2459059 D 5874 CDS TA19850 3864376 2461259..2461744 1 1 NC_011129.2 uncharacterized protein 2461744 3864376 TA19850 Theileria annulata uncharacterized protein XP_954651.1 2461259 D 5874 CDS TA19845 3864375 complement(join(2461794..2461901,2462009..2462179,2462207..2463745)) 1 1 NC_011129.2 Existence of the intron is uncertain, thus alternative gene model possible; weak similarity to C2H2-zinc finger Pfam domain; uncharacterized protein 2463745 3864375 TA19845 Theileria annulata uncharacterized protein XP_954652.1 2461794 R 5874 CDS TA19840 3864374 complement(join(2463993..2464154,2464187..2464417,2464451..2464540,2464571..2464929,2464961..2465231,2465265..2465321)) 1 1 NC_011129.2 uncharacterized protein 2465321 3864374 TA19840 Theileria annulata uncharacterized protein XP_954653.1 2463993 R 5874 CDS TA19835 3864373 2465691..2467574 1 1 NC_011129.2 small overlap at the 3' end with gene TA19830; uncharacterized protein 2467574 3864373 TA19835 Theileria annulata uncharacterized protein XP_954654.1 2465691 D 5874 CDS TA19830 3864372 complement(join(2467571..2467784,2467814..2467880,2467929..2468042,2468073..2468176,2468206..2468287,2468316..2468386,2468417..2468435,2468467..2468509,2468539..2468588,2468620..2468725,2468758..2468882,2468918..2469097,2469141..2469212,2469251..2469353)) 1 1 NC_011129.2 Contains Kelch domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA19830 by TMHMM2.0 at aa 424-442; Signal peptide predicted for TA19830 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.341 between residues 22 and 23; small overlap at the 3' end with gene TA19835; Kelch-domain containing protein, putative 2469353 3864372 TA19830 Theileria annulata Kelch-domain containing protein, putative XP_954655.1 2467571 R 5874 CDS TA19825 3864371 join(2469812..2469895,2469930..2470517) 1 1 NC_011129.2 uncharacterized protein 2470517 3864371 TA19825 Theileria annulata uncharacterized protein XP_954656.1 2469812 D 5874 CDS TA19824 3864370 2470789..2470986 1 1 NC_011129.2 uncharacterized protein 2470986 3864370 TA19824 Theileria annulata uncharacterized protein XP_954657.1 2470789 D 5874 CDS TA19823 3864369 join(2471231..2471341,2471372..2471653) 1 1 NC_011129.2 uncharacterized protein 2471653 3864369 TA19823 Theileria annulata uncharacterized protein XP_954658.1 2471231 D 5874 CDS TA19820 3864368 complement(join(2471738..2471845,2471861..2471951,2471969..2472091,2472121..2472226,2472275..2472334,2472380..2472403,2472456..2472558)) 1 1 NC_011129.2 Contains 1 putative membrane-spanning region; 1 probable transmembrane helix predicted for TA19820 by TMHMM2.0 at aa 5-27; uncharacterized protein 2472558 3864368 TA19820 Theileria annulata uncharacterized protein XP_954659.1 2471738 R 5874 CDS TA19815 3864367 join(2472841..2472889,2472932..2472948,2472981..2473244) 1 1 NC_011129.2 uncharacterized protein 2473244 3864367 TA19815 Theileria annulata uncharacterized protein XP_954660.1 2472841 D 5874 CDS TA19810 3863906 complement(2473371..2474828) 1 1 NC_011129.2 glucokinase, putative 2474828 3863906 TA19810 Theileria annulata glucokinase, putative XP_954661.1 2473371 R 5874 CDS TA19805 3863905 complement(join(2475280..2475556,2475589..2475847,2475881..2476142)) 1 1 NC_011129.2 uncharacterized protein 2476142 3863905 TA19805 Theileria annulata uncharacterized protein XP_954662.1 2475280 R 5874 CDS TA19800 3863904 complement(2476204..2477661) 1 1 NC_011129.2 hexokinase 1, putative 2477661 3863904 TA19800 Theileria annulata hexokinase 1, putative XP_954663.1 2476204 R 5874 CDS TA19795 3863903 join(2478107..2478233,2478271..2478603,2478634..2479559) 1 1 NC_011129.2 uncharacterized protein 2479559 3863903 TA19795 Theileria annulata uncharacterized protein XP_954664.1 2478107 D 5874 CDS TA19790 3863902 complement(join(2479580..2479791,2479822..2479957,2479989..2480066,2480100..2480187,2480220..2480346,2480380..2480493,2480524..2480602)) 1 1 NC_011129.2 ribonuclease h1 large subunit, putative 2480602 3863902 TA19790 Theileria annulata ribonuclease h1 large subunit, putative XP_954665.1 2479580 R 5874 CDS TA19785 3863901 join(2480941..2481591,2481620..2481952) 1 1 NC_011129.2 uncharacterized protein 2481952 3863901 TA19785 Theileria annulata uncharacterized protein XP_954666.1 2480941 D 5874 CDS TA19780 3863900 join(2482342..2482576,2482606..2482800,2482830..2482945,2482977..2483306) 1 1 NC_011129.2 u3 small nucleolar ribonucleoprotein, putative 2483306 3863900 TA19780 Theileria annulata u3 small nucleolar ribonucleoprotein, putative XP_954667.1 2482342 D 5874 CDS TA19775 3863899 complement(2483342..2484718) 1 1 NC_011129.2 uncharacterized protein 2484718 3863899 TA19775 Theileria annulata uncharacterized protein XP_954668.1 2483342 R 5874 CDS TA19770 3863898 join(2485277..2486194,2486226..2486462,2486493..2486606,2486637..2486906) 1 1 NC_011129.2 polyA polymerase, putative 2486906 3863898 TA19770 Theileria annulata polyA polymerase, putative XP_954669.1 2485277 D 5874 CDS TA19765 3863897 complement(join(2487342..2487416,2487447..2487576,2487608..2487760,2487791..2487903,2487934..2488053,2488086..2488120,2488233..2488365,2488393..2488460,2488490..2488650,2488683..2489224)) 1 1 NC_011129.2 Moderate FASTA hit to origin recognition complexes from diverse origin such as P. falciparum, X. laevis and M. musculus; origin recognition complex-like protein, putative 2489224 3863897 TA19765 Theileria annulata origin recognition complex-like protein, putative XP_954670.1 2487342 R 5874 CDS TA19760 3863896 join(2489952..2490659,2490691..2490857,2490923..2491199) 1 1 NC_011129.2 Signal peptide predicted for TA19760 by SignalP 2.0 HMM (Signal peptide probability 0.900, signal anchor probability 0.026) with cleavage site probability 0.318 between residues 26 and 27; DNAJ protein, putative 2491199 3863896 TA19760 Theileria annulata DNAJ protein, putative XP_954671.1 2489952 D 5874 CDS TA19755 3863895 join(2491298..2491588,2491624..2493188,2493235..2493976) 1 1 NC_011129.2 uncharacterized protein 2493976 3863895 TA19755 Theileria annulata uncharacterized protein XP_954672.1 2491298 D 5874 CDS TA19750 3863894 2494523..2496121 1 1 NC_011129.2 Weak match to P. falciparum DNA-directed RNA polymerase beta' chain; 1 probable transmembrane helix predicted for TA19750 by TMHMM2.0 at aa 375-397; uncharacterized protein 2496121 3863894 TA19750 Theileria annulata uncharacterized protein XP_954673.1 2494523 D 5874 CDS TA19745 3863893 complement(2496246..2498204) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19745 by TMHMM2.0 at aa 2-24; aspartyl/glutamyl-trna amido transferase, putative 2498204 3863893 TA19745 Theileria annulata aspartyl/glutamyl-trna amido transferase, putative XP_954674.1 2496246 R 5874 CDS TA19740 3863892 complement(join(2498488..2498726,2498777..2498853,2498884..2499020,2499056..2499277,2499309..2499388,2499421..2499718)) 1 1 NC_011129.2 alkylated DNA repair protein, putative 2499718 3863892 TA19740 Theileria annulata alkylated DNA repair protein, putative XP_954675.1 2498488 R 5874 CDS TA19735 3863891 complement(2499800..2500864) 1 1 NC_011129.2 DNA-directed RNA polymerase ii, putative 2500864 3863891 TA19735 Theileria annulata DNA-directed RNA polymerase ii, putative XP_954676.1 2499800 R 5874 CDS TA19730 3863890 complement(join(2501213..2501886,2501924..2502034,2502064..2502102,2502133..2502236,2502266..2502535,2502568..2502596)) 1 1 NC_011129.2 TapCf04.q1c.cand.11 - score = 35.73; 1 probable transmembrane helix predicted for TA19730 by TMHMM2.0 at aa 7-29; uncharacterized protein 2502596 3863890 TA19730 Theileria annulata uncharacterized protein XP_954677.1 2501213 R 5874 CDS TA19725 3863889 complement(2503329..2505533) 1 1 NC_011129.2 uncharacterized protein 2505533 3863889 TA19725 Theileria annulata uncharacterized protein XP_954678.1 2503329 R 5874 CDS TA19720 3863888 join(2505846..2506010,2506041..2506260,2506446..2506546,2506578..2507069,2507146..2507278,2507442..2507638) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19720 by TMHMM2.0 at aa 385-407; uncharacterized protein 2507638 3863888 TA19720 Theileria annulata uncharacterized protein XP_954679.1 2505846 D 5874 CDS TA19715 3863868 join(2508195..2509305,2509372..2509564,2509711..2509770,2509805..2509974,2510114..2510300,2510372..2511038) 1 1 NC_011129.2 cysteine desulfurase, putative 2511038 3863868 TA19715 Theileria annulata cysteine desulfurase, putative XP_954680.1 2508195 D 5874 CDS TA19710 3863867 join(2511368..2512334,2512421..2513539,2513645..2514014,2514047..2515644,2515719..2518266,2518339..2518525) 1 1 NC_011129.2 uncharacterized protein 2518525 3863867 TA19710 Theileria annulata uncharacterized protein XP_954681.1 2511368 D 5874 CDS TA19670 3863860 complement(join(2518636..2518850,2518917..2519679,2519750..2520274)) 1 1 NC_011129.2 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA19670 by SignalP 2.0 HMM (Signal peptide probability 0.843, signal anchor probability 0.033) with cleavage site probability 0.520 between residues 23 and 24; uncharacterized protein 2520274 3863860 TA19670 Theileria annulata uncharacterized protein XP_954682.1 2518636 R 5874 CDS TA19615 3863849 complement(join(2520454..2520818,2520960..2521731)) 1 1 NC_011129.2 uncharacterized protein 2521731 3863849 TA19615 Theileria annulata uncharacterized protein XP_954683.1 2520454 R 5874 CDS TA19560 3864043 complement(join(2521926..2522153,2522301..2522506,2522644..2522719,2522846..2522878,2522908..2523593,2523710..2523908,2523939..2524010,2524140..2524332,2524435..2524997,2525078..2525333,2525365..2525430,2525518..2525623,2525706..2525815,2525847..2525859,2525913..2526105)) 1 1 NC_011129.2 uncharacterized protein 2526105 3864043 TA19560 Theileria annulata uncharacterized protein XP_954684.1 2521926 R 5874 CDS TA19555 3864042 join(2527089..2528393,2528521..2529511,2529635..2529927) 1 1 NC_011129.2 Similar to several sortilin-like proteins; 1 probable transmembrane helix predicted for TA19555 by TMHMM2.0 at aa 769-788; sortilin-like protein, putative 2529927 3864042 TA19555 Theileria annulata sortilin-like protein, putative XP_954685.1 2527089 D 5874 CDS TA19450 3863643 complement(join(2530391..2530625,2530717..2530982,2531022..2531127,2531202..2531924,2531956..2532096,2532239..2532732)) 1 1 NC_011129.2 uncharacterized protein 2532732 3863643 TA19450 Theileria annulata uncharacterized protein XP_954686.1 2530391 R 5874 CDS TA19445 3863642 2533392..2535272 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19445 by TMHMM2.0 at aa 13-35; GPI-Anchor Signal predicted for TA19445 by DGPI v2.04 with cleavage site probability 0.12900001 near 609; uncharacterized protein 2535272 3863642 TA19445 Theileria annulata uncharacterized protein XP_954687.1 2533392 D 5874 CDS TA19390 3864499 2535697..2537829 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19390 by TMHMM2.0 at aa 606-628; uncharacterized protein 2537829 3864499 TA19390 Theileria annulata uncharacterized protein XP_954688.1 2535697 D 5874 CDS TA19335 3864488 join(2538103..2538267,2538298..2538543,2538575..2538679,2538710..2538777,2538809..2538944,2539024..2539119,2539148..2539300) 1 1 NC_011129.2 exosome complex exonuclease, putative 2539300 3864488 TA19335 Theileria annulata exosome complex exonuclease, putative XP_954689.1 2538103 D 5874 CDS TA19280 3864478 join(2539605..2539738,2539793..2539875,2539906..2540114) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19280 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA19280 by SignalP 2.0 HMM (Signal peptide probability 0.838, signal anchor probability 0.022) with cleavage site probability 0.378 between residues 23 and 24; uncharacterized protein 2540114 3864478 TA19280 Theileria annulata uncharacterized protein XP_954690.1 2539605 D 5874 CDS TA19175 3863785 complement(2540622..2545199) 1 1 NC_011129.2 10 probable transmembrane helices predicted for TA19175 by TMHMM2.0 at aa 140-162, 174-196, 289-311, 318-340, 397-419, 837-859, 900-922, 959-981, 996-1018 and 1082-1104; ABC transporter protein, putative 2545199 3863785 TA19175 Theileria annulata ABC transporter protein, putative XP_954691.1 2540622 R 5874 CDS TA19170 3863784 join(2546359..2547632,2547674..2549297) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA19170 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA19170 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.606 between residues 22 and 23; uncharacterized protein 2549297 3863784 TA19170 Theileria annulata uncharacterized protein XP_954692.1 2546359 D 5874 CDS TA19115 3863773 2550478..2557515 1 1 NC_011129.2 TapCf04.q1c.C.cand.126 - score = 115.76; Signal anchor predicted for TA19115 by SignalP 2.0 HMM (Signal peptide probability 0.238, signal anchor probability 0.656) with cleavage site probability 0.195 between residues 28 and 29; SfiI-subtelomeric fragment related protein family member, putative 2557515 3863773 TA19115 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954693.1 2550478 D 5874 CDS TA19060 3863986 2557972..2559012 1 1 NC_011129.2 Theileria-specific sub-telomeric protein, SVSP family 2559012 3863986 TA19060 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954694.1 2557972 D 5874 CDS TA19005 3863635 2559353..2561176 1 1 NC_011129.2 Signal peptide predicted for TA19005 by SignalP 2.0 HMM (Signal peptide probability 0.751, signal anchor probability 0.000) with cleavage site probability 0.550 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family 2561176 3863635 TA19005 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954695.1 2559353 D 5874 CDS TA18950 3863624 2561444..2563261 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA18950 by TMHMM2.0 at aa 5-22; Theileria-specific sub-telomeric protein, SVSP family 2563261 3863624 TA18950 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954696.1 2561444 D 5874 CDS TA18895 3864324 2563483..2564892 1 1 NC_011129.2 Theileria-specific sub-telomeric protein, SVSP family 2564892 3864324 TA18895 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954697.1 2563483 D 5874 CDS TA18890 3864323 2565128..2566489 1 1 NC_011129.2 Theileria-specific sub-telomeric protein, SVSP family 2566489 3864323 TA18890 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954698.1 2565128 D 5874 CDS TA18885 3864322 2566702..2568492 1 1 NC_011129.2 Signal peptide predicted for TA18885 by SignalP 2.0 HMM (Signal peptide probability 0.922, signal anchor probability 0.019) with cleavage site probability 0.757 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family 2568492 3864322 TA18885 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954699.1 2566702 D 5874 CDS TA18880 3864321 2569016..2569894 1 1 NC_011129.2 Signal peptide predicted for TA18880 by SignalP 2.0 HMM (Signal peptide probability 0.662, signal anchor probability 0.001) with cleavage site probability 0.342 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 2569894 3864321 TA18880 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954700.1 2569016 D 5874 CDS TA18875 3864320 2570855..2571949 1 1 NC_011129.2 SfiI-subtelomeric fragment related protein family member, putative 2571949 3864320 TA18875 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954701.1 2570855 D 5874 CDS TA18870 3864319 complement(2572786..2575830) 1 1 NC_011129.2 1 probable transmembrane helix predicted for TA18870 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA18870 by SignalP 2.0 HMM (Signal peptide probability 0.201, signal anchor probability 0.796) with cleavage site probability 0.081 between residues 25 and 26; uncharacterized protein 2575830 3864319 TA18870 Theileria annulata uncharacterized protein XP_954702.1 2572786 R 5874 CDS TA18865 3864318 2577067..2578575 1 1 NC_011129.2 Proline-rich hypothetical protein; Signal peptide predicted for TA18865 by SignalP 2.0 HMM (Signal peptide probability 0.845, signal anchor probability 0.040) with cleavage site probability 0.798 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family 2578575 3864318 TA18865 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954703.1 2577067 D 5874 CDS TA18860 3864317 2578905..2581529 1 1 NC_011129.2 Signal peptide predicted for TA18860 by SignalP 2.0 HMM (Signal peptide probability 0.977, signal anchor probability 0.020) with cleavage site probability 0.594 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family 2581529 3864317 TA18860 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954704.1 2578905 D 5874 CDS TA18855 3864316 2582678..2589937 1 1 NC_011129.2 Signal peptide predicted for TA18855 by SignalP 2.0 HMM (Signal peptide probability 0.841, signal anchor probability 0.001) with cleavage site probability 0.778 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 2589937 3864316 TA18855 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954705.1 2582678 D 5874 CDS TA17350 3864543 500..5080 1 1 NW_001091930.1 Tap-921d01.p1c.cand.1 - score = 61.16; SMART 11 transmembrane domains at aa 141-160, 175-197, 286-308, 323-345, 401-423, 443-465, 838-860, 901-923, 960-982, 997-1019, 1086-1108; 2 AAA (SM0382) domains at aa 549-736, E()=1.09e+00; 1265-1443, E()=7.27e-07; 11 probable transmembrane helices predicted for TA17350 by TMHMM2.0 at aa 141-160, 175-197, 286-308, 323-345, 401-423, 443-465, 838-860, 901-923, 960-982, 997-1019 and 1086-1108; (subtelomeric) ABC-transporter protein family member, putative 5080 3864543 TA17350 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_954706.1 500 D 5874 CDS TA17355 3864544 complement(5889..11789) 1 1 NW_001091930.1 Tap-921d01.p1c.C.cand.10 - score = 111.55; Signal peptide predicted for TA17355 by SignalP 2.0 HMM (Signal peptide probability 0.911, signal anchor probability 0.000) with cleavage site probability 0.889 between residues 20 and 21; SfiI-subtelomeric fragment related protein family member, putative 11789 3864544 TA17355 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954707.1 5889 R 5874 CDS TA09765 3864542 14336..>15378 1 1 NW_001091930.1 SfiI-subtelomeric fragment related protein family member, putative 15378 3864542 TA09765 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954708.1 14336 D 5874 CDS TA17491 3864549 <1..3616 1 2 NW_001091931.1 uncharacterized protein 3616 3864549 TA17491 Theileria annulata uncharacterized protein XP_954709.1 1 D 5874 CDS TA17490 3864548 4080..4844 1 1 NW_001091931.1 uncharacterized protein 4844 3864548 TA17490 Theileria annulata uncharacterized protein XP_954710.1 4080 D 5874 CDS TA17485 3864547 6210..7442 1 1 NW_001091931.1 Signal peptide predicted for TA17485 by SignalP 2.0 HMM (Signal peptide probability 0.642, signal anchor probability 0.311) with cleavage site probability 0.504 between residues 22 and 23; Theileria-specific sub-telomeric protein, SVSP family 7442 3864547 TA17485 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954711.1 6210 D 5874 CDS TA17480 3864546 join(7729..8093,8421..9285) 1 1 NW_001091931.1 TapBAC05a05.q1k.C.cand.5 - score = 38.18; SMART 1 transmembrane domain at aa 15-34; SMART 1 transmembrane domain at aa 21-38; It is possible that this one is a pseudogene as there is a stop codon in the middle of the gene and the present model makes it as a two-exon gene; 1 probable transmembrane helix predicted for TA17480 by TMHMM2.0 at aa 21-38; Signal anchor predicted for TA17480 by SignalP 2.0 HMM (Signal peptide probability 0.007, signal anchor probability 0.658) with cleavage site probability 0.006 between residues 37 and 38; Theileria-specific sub-telomeric protein, SVSP family 9285 3864546 TA17480 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954712.1 7729 D 5874 CDS TA17475 3864545 9605..10987 1 1 NW_001091931.1 Signal peptide predicted for TA17475 by SignalP 2.0 HMM (Signal peptide probability 0.981, signal anchor probability 0.016) with cleavage site probability 0.564 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family 10987 3864545 TA17475 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_954713.1 9605 D 5874 CDS TA17358 3864551 complement(3423..10436) 1 1 NW_001091932.1 uncharacterized protein 10436 3864551 TA17358 Theileria annulata uncharacterized protein XP_954714.1 3423 R 5874 CDS TA17346 3864550 complement(11836..>12928) 1 2 NW_001091932.1 uncharacterized protein 12928 3864550 TA17346 Theileria annulata uncharacterized protein XP_954715.1 11836 R 5874 CDS TA16055 3862307 complement(3563..7171) 2 1 NC_011099.1 chr2.cand.535 - hypothetical temomere family protein; Signal peptide predicted for TA16055 by SignalP 2.0 HMM (Signal peptide probability 0.975, signal anchor probability 0.000) with cleavage site probability 0.696 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 7171 3862307 TA16055 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_951758.1 3563 R 5874 CDS TA16050 3862306 complement(8106..23891) 2 1 NC_011099.1 chr2.cand.534 - signal peptide; Signal peptide predicted for TA16050 by SignalP 2.0 HMM (Signal peptide probability 0.977, signal anchor probability 0.000) with cleavage site probability 0.682 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 23891 3862306 TA16050 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_951759.1 8106 R 5874 CDS TA16045 3862305 complement(24579..26027) 2 1 NC_011099.1 chr2.cand.533 - signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16045 by SignalP 2.0 HMM (Signal peptide probability 0.931, signal anchor probability 0.049) with cleavage site probability 0.901 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative 26027 3862305 TA16045 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_951760.1 24579 R 5874 CDS TA16040 3862304 complement(27623..29470) 2 1 NC_011099.1 chr2.cand.532 - signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16040 by SignalP 2.0 HMM (Signal peptide probability 0.915, signal anchor probability 0.000) with cleavage site probability 0.699 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative 29470 3862304 TA16040 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_951761.1 27623 R 5874 CDS TA16035 3862303 complement(29797..31008) 2 1 NC_011099.1 chr2.cand.531 - signal peptide, telomere P,Q-rich family; Theileria-specific sub-telomeric protein, SVSP family, putative 31008 3862303 TA16035 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_951762.1 29797 R 5874 CDS TA16030 3861852 complement(31417..33132) 2 1 NC_011099.1 chr2.cand.530 -signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16030 by SignalP 2.0 HMM (Signal peptide probability 0.780, signal anchor probability 0.065) with cleavage site probability 0.687 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 33132 3861852 TA16030 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_951763.1 31417 R 5874 CDS TA16025 3861851 complement(33419..35101) 2 1 NC_011099.1 chr2.cand.529 - signal peptide, telomere P,Q-rich family; signal peptide, telomere P,Q-rich family; Signal peptide predicted for TA16025 by SignalP 2.0 HMM (Signal peptide probability 0.935, signal anchor probability 0.000) with cleavage site probability 0.723 between residues 18 and 19; Theileria-specific sub-telomeric protein, SVSP family, putative 35101 3861851 TA16025 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_951764.1 33419 R 5874 CDS TA16020 3861850 complement(35497..36564) 2 1 NC_011099.1 chr2.cand.528 - signal peptide; secreted protein, putative; Signal peptide predicted for TA16020 by SignalP 2.0 HMM (Signal peptide probability 0.986, signal anchor probability 0.013) with cleavage site probability 0.808 between residues 23 and 24; uncharacterized protein 36564 3861850 TA16020 Theileria annulata uncharacterized protein XP_951765.1 35497 R 5874 CDS TA16015 3861849 38170..42720 2 1 NC_011099.1 chr2.C.cand.4 - ABC transporter; 10 probable transmembrane helices predicted for TA16015 by TMHMM2.0 at aa 140-162, 174-196, 289-311, 318-340, 397-419, 439-461, 842-859, 904-926, 995-1017 and 1078-1100; (subtelomeric) ABC-transporter protein family member, putative 42720 3861849 TA16015 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_951766.1 38170 D 5874 CDS TA16010 3861848 complement(join(43190..44333,44379..44816,44856..46132)) 2 1 NC_011099.1 chr2.cand.527 - signal peptide, hypothetical protein; secreted protein, putative; 1 probable transmembrane helix predicted for TA16010 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA16010 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.606 between residues 22 and 23; uncharacterized protein 46132 3861848 TA16010 Theileria annulata uncharacterized protein XP_951767.1 43190 R 5874 CDS TA16005 3861847 complement(47220..48503) 2 1 NC_011099.1 signal peptide, transmembrane protein; transmembrane protein, putative; 1 probable transmembrane helix predicted for TA16005 by TMHMM2.0 at aa 405-426; Signal peptide predicted for TA16005 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.000) with cleavage site probability 0.872 between residues 18 and 19; GPI-Anchor Signal predicted for TA16005 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 48503 3861847 TA16005 Theileria annulata uncharacterized protein XP_951768.1 47220 R 5874 CDS TA16000 3861846 complement(join(49046..49236,49280..49432,49550..49760)) 2 1 NC_011099.1 chr2.cand.525 - 40s ribosomal protein s8; 40S ribosomal protein S8, putative 49760 3861846 TA16000 Theileria annulata 40S ribosomal protein S8, putative XP_951769.1 49046 R 5874 CDS TA15985 3861843 join(50479..50681,50719..50776,50828..50908,50939..51160) 2 1 NC_011099.1 all_bases.C.cand.1316 - hypothetical protein; uncharacterized protein 51160 3861843 TA15985 Theileria annulata uncharacterized protein XP_951770.1 50479 D 5874 CDS TA15980 3861842 complement(join(51506..51670,51707..51897,51961..52086,52409..52530,52570..52667,52701..52808,52840..52959,53070..53120)) 2 1 NC_011099.1 all_bases.cand.525 - hypothetical protein; uncharacterized protein 53120 3861842 TA15980 Theileria annulata uncharacterized protein XP_951771.1 51506 R 5874 CDS TA15975 3861841 join(53604..53880,53956..54072,54103..54210,54239..54310,54341..54414,54443..54514,54547..55268,55335..55443) 2 1 NC_011099.1 all_bases.C.cand.1317 - serine/threonine protein phosphatase; serine/threonine protein phosphatase, putative 55443 3861841 TA15975 Theileria annulata serine/threonine protein phosphatase, putative XP_951772.1 53604 D 5874 CDS TA15970 3861840 56158..58461 2 1 NC_011099.1 chr2.C.cand.8 - CPDc catalytic domain of ctd-like phosphatases; CTD-like phosphatase, putative 58461 3861840 TA15970 Theileria annulata CTD-like phosphatase, putative XP_951773.1 56158 D 5874 CDS TA15965 3861839 join(58880..59294,59324..60252) 2 1 NC_011099.1 chr2.C.cand.9 - signal peptide, transmembrane domains; transmembrane protein, putative; 9 probable transmembrane helices predicted for TA15965 by TMHMM2.0 at aa 29-51, 66-85, 92-111, 121-143, 155-174, 189-211, 322-344, 349-371 and 408-430; uncharacterized protein 60252 3861839 TA15965 Theileria annulata uncharacterized protein XP_951774.1 58880 D 5874 CDS TA15960 3861838 complement(join(60315..60455,60532..60652,60682..60805,60835..60940,60970..61035,61066..61140,61169..61328,61360..61529,61559..61724,61774..61861,61891..63154)) 2 1 NC_011099.1 all_bases.cand.524 - signal peptide, PF00248 Aldo/keto reductase family; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA15960 by SignalP 2.0 HMM (Signal peptide probability 0.705, signal anchor probability 0.003) with cleavage site probability 0.191 between residues 23 and 24; aldo-keto reductase family protein, putative 63154 3861838 TA15960 Theileria annulata aldo-keto reductase family protein, putative XP_951775.1 60315 R 5874 CDS TA15955 3861837 complement(63465..68000) 2 1 NC_011099.1 chr2.cand.520 -ABC transporter; 12 probable transmembrane helices predicted for TA15955 by TMHMM2.0 at aa 133-155, 168-190, 195-217, 279-301, 316-338, 390-412, 448-470, 824-846, 896-918, 962-984, 989-1006 and 1071-1093; (subtelomeric) ABC-transporter protein family member, putative 68000 3861837 TA15955 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_951776.1 63465 R 5874 CDS TA15950 3861836 69133..70176 2 1 NC_011099.1 chr2.C.cand.10 - possible signal peptide; secreted protein, putative; uncharacterized protein 70176 3861836 TA15950 Theileria annulata uncharacterized protein XP_951777.1 69133 D 5874 CDS TA15945 3861835 complement(join(70258..72863,72975..79711,79778..80240,80274..80422,80504..82322,82390..84424)) 2 1 NC_011099.1 chr2.cand.519 - hypothetical protein; uncharacterized protein 84424 3861835 TA15945 Theileria annulata uncharacterized protein XP_951778.1 70258 R 5874 CDS TA15940 3861834 complement(join(84935..85267,85354..86667)) 2 1 NC_011099.1 chaperone, putative 86667 3861834 TA15940 Theileria annulata chaperone, putative XP_951779.1 84935 R 5874 CDS TA15935 3861833 87035..87910 2 1 NC_011099.1 chr2.C.cand.12 - hypothetical protein; uncharacterized protein 87910 3861833 TA15935 Theileria annulata uncharacterized protein XP_951780.1 87035 D 5874 CDS TA15930 3861871 complement(join(87995..88468,88535..89036,89084..90433,90530..90612)) 2 1 NC_011099.1 chr2.cand.517 - glucosamine--fructose-6-phosphate aminotransferase; glucosamine--fructose-6-phosphate aminotransferase, putative 90612 3861871 TA15930 Theileria annulata glucosamine--fructose-6-phosphate aminotransferase, putative XP_951781.1 87995 R 5874 CDS TA15925 3861870 join(91595..93236,93334..93464) 2 1 NC_011099.1 chr2.C.cand.13 - calcium binding protein; calcium binding protein; uncharacterized protein 93464 3861870 TA15925 Theileria annulata uncharacterized protein XP_951782.1 91595 D 5874 CDS TA15920 3861869 complement(join(93576..94030,94094..94430,94507..95797,95835..95864,95900..96081,96112..96138)) 2 1 NC_011099.1 all_bases.cand.519 - RNA binding protein; 1 probable transmembrane helix predicted for TA15920 by TMHMM2.0 at aa 52-74; RNA binding protein (nil per os homologue), putative 96138 3861869 TA15920 Theileria annulata RNA binding protein (nil per os homologue), putative XP_951783.1 93576 R 5874 CDS TA15915 3861868 complement(join(96297..96391,96431..96740)) 2 1 NC_011099.1 hypothetical protein, conserved; uncharacterized protein 96740 3861868 TA15915 Theileria annulata uncharacterized protein XP_951784.1 96297 R 5874 CDS TA15910 3861867 join(97366..97474,97524..97721,97762..99684,99752..99875,99917..100376,100448..100688,100743..101701) 2 1 NC_011099.1 chr2.C.cand.14 - hypothetical transmembrane protein, conserved; 4 probable transmembrane helices predicted for TA15910 by TMHMM2.0 at aa 1120-1142, 1162-1184, 1204-1226 and 1283-1305; Signal peptide predicted for TA15910 by SignalP 2.0 HMM (Signal peptide probability 0.644, signal anchor probability 0.000) with cleavage site probability 0.290 between residues 26 and 27; uncharacterized protein 101701 3861867 TA15910 Theileria annulata uncharacterized protein XP_951785.1 97366 D 5874 CDS TA15905 3861866 complement(join(101731..102039,102070..102253,102286..102865,102928..103018)) 2 1 NC_011099.1 chr2.cand.514 - hypothetical protein; uncharacterized protein 103018 3861866 TA15905 Theileria annulata uncharacterized protein XP_951786.1 101731 R 5874 CDS TA15900 3861865 complement(join(103157..103262,103316..103455,103532..103662,103812..104022,104119..104250)) 2 1 NC_011099.1 proteasome subunit alpha type 1; proteasome subunit alpha type 1, putative 104250 3861865 TA15900 Theileria annulata proteasome subunit alpha type 1, putative XP_951787.1 103157 R 5874 CDS TA15895 3861864 complement(join(104652..105260,105329..105451,105488..105712,105811..106197)) 2 1 NC_011099.1 chr2.cand.511 - metallo-protease; 5 probable transmembrane helices predicted for TA15895 by TMHMM2.0 at aa 94-116, 126-148, 168-190, 205-224 and 358-380; metallo-protease, putative 106197 3861864 TA15895 Theileria annulata metallo-protease, putative XP_951788.1 104652 R 5874 CDS TA15890 3861863 complement(join(106644..106918,106975..107141,107189..107451,107503..107733,107800..108180)) 2 1 NC_011099.1 chr2.cand.510 - metalloprotease; 6 probable transmembrane helices predicted for TA15890 by TMHMM2.0 at aa 10-32, 85-107, 172-194, 201-220, 305-324 and 337-359; metallo-protease, putative 108180 3861863 TA15890 Theileria annulata metallo-protease, putative XP_951789.1 106644 R 5874 CDS TA15875 3861860 complement(join(108362..108467,108521..108660,108728..108858,109010..109220,109317..109448)) 2 1 NC_011099.1 chr2.cand.509 - proteasome subunit alpha type 1; proteasome subunit alpha type 1, putative 109448 3861860 TA15875 Theileria annulata proteasome subunit alpha type 1, putative XP_951790.1 108362 R 5874 CDS TA15870 3861859 complement(join(109869..110504,110566..110688,110731..110961,111060..111446)) 2 1 NC_011099.1 chr2.cand.508 - metallo-protease; 4 probable transmembrane helices predicted for TA15870 by TMHMM2.0 at aa 126-148, 168-190, 205-227 and 359-381; metallo-protease, putative 111446 3861859 TA15870 Theileria annulata metallo-protease, putative XP_951791.1 109869 R 5874 CDS TA15865 3861858 112475..114355 2 1 NC_011099.1 chr2.C.cand.15 - hypothetical protein, some sim. to phosphoacetylglucosamine mutase; phosphoacetylglucosamine mutase, putative 114355 3861858 TA15865 Theileria annulata phosphoacetylglucosamine mutase, putative XP_951792.1 112475 D 5874 CDS TA15860 3861857 complement(join(114556..115066,115096..116543,116599..116643)) 2 1 NC_011099.1 chr2.cand.507 - signal peptide, hypothetical protein; secreted protein, putative; uncharacterized protein 116643 3861857 TA15860 Theileria annulata uncharacterized protein XP_951793.1 114556 R 5874 CDS TA15855 3861856 complement(116989..117594) 2 1 NC_011099.1 prenylated protein, putative; chr2.cand.506 - prenylated protein, putative; synaptobrevin-like protein, putative 117594 3861856 TA15855 Theileria annulata synaptobrevin-like protein, putative XP_951794.1 116989 R 5874 CDS TA15850 3861855 complement(117827..119983) 2 1 NC_011099.1 chr2.cand.505 - PF01142 uncharacterized protein family UPF0024; uncharacterized protein family UPF0024; uncharacterized protein 119983 3861855 TA15850 Theileria annulata uncharacterized protein XP_951795.1 117827 R 5874 CDS TA15845 3861854 complement(120077..120742) 2 1 NC_011099.1 chr2.cand.504 - possible signal peptide, conserved hypothetical protein; secreted protein, putative; uncharacterized protein 120742 3861854 TA15845 Theileria annulata uncharacterized protein XP_951796.1 120077 R 5874 CDS TA15840 3861853 complement(join(121262..121430,121486..121699,121730..121829,121862..122113)) 2 1 NC_011099.1 all_bases.cand.508 - PF01027 Uncharacterised protein family UPF0005; 7 probable transmembrane helices predicted for TA15840 by TMHMM2.0 at aa 36-53, 57-79, 91-109, 119-141, 148-170, 174-193 and 209-231; apoptosis inhibitor, Bax-1 homologue, putative 122113 3861853 TA15840 Theileria annulata apoptosis inhibitor, Bax-1 homologue, putative XP_951797.1 121262 R 5874 CDS TA15835 3862007 complement(join(122239..122302,122358..127531)) 2 1 NC_011099.1 zinc finger protein, putative; chr2.cand.502 - zinc finger protein; uncharacterized protein 127531 3862007 TA15835 Theileria annulata uncharacterized protein XP_951798.1 122239 R 5874 CDS TA15830 3862006 complement(128000..128863) 2 1 NC_011099.1 chr2.cand.501 - score = 18.43 PF01226 formate/nitrate transporter; 6 probable transmembrane helices predicted for TA15830 by TMHMM2.0 at aa 37-59, 69-91, 112-134, 164-186, 193-215 and 241-263; formate/nitrate transporter, putative 128863 3862006 TA15830 Theileria annulata formate/nitrate transporter, putative XP_951799.1 128000 R 5874 CDS TA15825 3862005 join(129635..129661,129705..131582) 2 1 NC_011099.1 chr2.C.cand.17 - PF00004 ATPase family associated with various cellular activities (AAA); 26S protease subunit, putative 131582 3862005 TA15825 Theileria annulata 26S protease subunit, putative XP_951800.1 129635 D 5874 CDS TA15820 3862004 complement(join(131684..134631,134719..134767)) 2 1 NC_011099.1 chr2.cand.500 - hypothetical protein; uncharacterized protein 134767 3862004 TA15820 Theileria annulata uncharacterized protein XP_951801.1 131684 R 5874 CDS TA15815 3862003 complement(135161..135457) 2 1 NC_011099.1 uncharacterized protein 135457 3862003 TA15815 Theileria annulata uncharacterized protein XP_951802.1 135161 R 5874 CDS TA15810 3862002 complement(135560..136195) 2 1 NC_011099.1 hypothetical protein, PF00226 DnaJ domain; small overlap at the 5' end with gene TA15805; uncharacterized protein 136195 3862002 TA15810 Theileria annulata uncharacterized protein XP_951803.1 135560 R 5874 CDS TA15805 3862001 complement(136173..136709) 2 1 NC_011099.1 small overlap at the 3' end with gene TA15810; uncharacterized protein 136709 3862001 TA15805 Theileria annulata uncharacterized protein XP_951804.1 136173 R 5874 CDS TA15800 3862000 complement(137294..138166) 2 1 NC_011099.1 chr2.cand.498 - hypothetical protein; uncharacterized protein 138166 3862000 TA15800 Theileria annulata uncharacterized protein XP_951805.1 137294 R 5874 CDS TA15795 3861999 join(138816..139025,139055..139678) 2 1 NC_011099.1 all_bases.C.cand.1327 - signal peptide, transmembrane; transmembrane protein, putative; 4 probable transmembrane helices predicted for TA15795 by TMHMM2.0 at aa 13-35, 39-56, 63-82 and 102-121; uncharacterized protein 139678 3861999 TA15795 Theileria annulata uncharacterized protein XP_951806.1 138816 D 5874 CDS TA15790 3861998 join(140038..140078,140145..140209,140247..140301,140335..140407,140467..140601) 2 1 NC_011099.1 chr2.C.cand.19 - ran binding protein, PF00641, Zn finger in Ran binding protein and others; ran binding protein, putative 140601 3861998 TA15790 Theileria annulata ran binding protein, putative XP_951807.1 140038 D 5874 CDS TA15785 3861997 join(140677..142126,142157..142227) 2 1 NC_011099.1 chr2.C.cand.19 - 5'-3' exonuclease; 5'-3' exonuclease, putative 142227 3861997 TA15785 Theileria annulata 5'-3' exonuclease, putative XP_951808.1 140677 D 5874 CDS TA15780 3861996 142268..143128 2 1 NC_011099.1 chr2.C.cand.19 - hypothetical protein; uncharacterized protein 143128 3861996 TA15780 Theileria annulata uncharacterized protein XP_951809.1 142268 D 5874 CDS TA15765 3861993 144034..146370 2 1 NC_011099.1 chr2.C.cand.20 - hypothetical protein; uncharacterized protein 146370 3861993 TA15765 Theileria annulata uncharacterized protein XP_951810.1 144034 D 5874 CDS TA15760 3861992 join(146670..146838,146870..147007,147041..147630,147661..147822,147852..148050,148086..148195,148229..148393,148423..148552,148585..148598,148629..148719,148784..148865,148896..149376) 2 1 NC_011099.1 all_bases.C.cand.1330 - mono-oxygenase, PF01494 FAD binding domain, PF01360 Monooxygenase; 1 probable transmembrane helix predicted for TA15760 by TMHMM2.0 at aa 7-26; Signal anchor predicted for TA15760 by SignalP 2.0 HMM (Signal peptide probability 0.062, signal anchor probability 0.696) with cleavage site probability 0.025 between residues 35 and 36; mono-oxygenase, putative 149376 3861992 TA15760 Theileria annulata mono-oxygenase, putative XP_951811.1 146670 D 5874 CDS TA15755 3861991 complement(join(149412..150238,150296..150881)) 2 1 NC_011099.1 chr2.cand.496 - hypothetical protein; uncharacterized protein 150881 3861991 TA15755 Theileria annulata uncharacterized protein XP_951812.1 149412 R 5874 CDS TA15750 3861990 152797..153927 2 1 NC_011099.1 actin; actin 1, putative 153927 3861990 TA15750 Theileria annulata actin 1, putative XP_951813.1 152797 D 5874 CDS TA15745 3861989 complement(join(154044..154340,154406..155463,155496..155814)) 2 1 NC_011099.1 chr2.cand.495 - signal peptide, transmembrane; transmembrane protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA15745 by TMHMM2.0 at aa 7-26 and 528-547; Signal anchor predicted for TA15745 by SignalP 2.0 HMM (Signal peptide probability 0.023, signal anchor probability 0.937) with cleavage site probability 0.009 between residues 17 and 18; uncharacterized protein 155814 3861989 TA15745 Theileria annulata uncharacterized protein XP_951814.1 154044 R 5874 CDS TA15740 3861988 join(156545..156643,156676..157213,157279..157796) 2 1 NC_011099.1 chr2.C.cand.24 - PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase; cyclophilin, putative 157796 3861988 TA15740 Theileria annulata cyclophilin, putative XP_951815.1 156545 D 5874 CDS TA15735 3862125 complement(join(157857..158210,158254..158559)) 2 1 NC_011099.1 uncharacterized protein 158559 3862125 TA15735 Theileria annulata uncharacterized protein XP_951816.1 157857 R 5874 CDS TA15730 3862124 complement(158684..163117) 2 1 NC_011099.1 uncharacterized protein 163117 3862124 TA15730 Theileria annulata uncharacterized protein XP_951817.1 158684 R 5874 CDS TA15725 3862123 163826..166807 2 1 NC_011099.1 chr2.C.cand.25 - hypothetical protein; uncharacterized protein 166807 3862123 TA15725 Theileria annulata uncharacterized protein XP_951818.1 163826 D 5874 CDS TA15720 3862122 join(167581..170692,170731..170841,170892..172189) 2 1 NC_011099.1 chr2.C.cand.26 - membrane protein; membrane protein, putative; 13 probable transmembrane helices predicted for TA15720 by TMHMM2.0 at aa 13-30, 60-79, 86-108, 112-134, 147-169, 189-211, 236-258, 273-295, 563-585, 959-981, 1002-1019, 1029-1048 and 1069-1088; uncharacterized protein 172189 3862122 TA15720 Theileria annulata uncharacterized protein XP_951819.1 167581 D 5874 CDS TA15710 3862120 complement(172265..173338) 2 1 NC_011099.1 chr2.cand.492 - signal peptide; secreted protein, putative; uncharacterized protein 173338 3862120 TA15710 Theileria annulata uncharacterized protein XP_951820.1 172265 R 5874 CDS TA15705 3862119 complement(173922..174929) 2 1 NC_011099.1 chr2.cand.491 - signal peptide; secreted protein, putative; Signal peptide predicted for TA15705 by SignalP 2.0 HMM (Signal peptide probability 0.600, signal anchor probability 0.030) with cleavage site probability 0.264 between residues 18 and 19; uncharacterized protein 174929 3862119 TA15705 Theileria annulata uncharacterized protein XP_951821.1 173922 R 5874 CDS TA15700 3862118 complement(175343..176524) 2 1 NC_011099.1 chr2.cand.490 - AAA-ATPase, proteasome subunit; 26S proteasome ATPase subunit (Rpt6A homologue), putative 176524 3862118 TA15700 Theileria annulata 26S proteasome ATPase subunit (Rpt6A homologue), putative XP_951822.1 175343 R 5874 CDS TA15695 3862117 complement(176980..177507) 2 1 NC_011099.1 chr2.cand.489 - signal peptide; secreted ptotein; uncharacterized protein 177507 3862117 TA15695 Theileria annulata uncharacterized protein XP_951823.1 176980 R 5874 CDS TA15690 3862116 complement(177908..178915) 2 1 NC_011099.1 chr2.cand.488 - signal peptide; secreted protein, putative; uncharacterized protein 178915 3862116 TA15690 Theileria annulata uncharacterized protein XP_951824.1 177908 R 5874 CDS TA15685 3862115 complement(179384..180154) 2 1 NC_011099.1 chr2.cand.487 - signal peptide; secreted protein, putative; uncharacterized protein 180154 3862115 TA15685 Theileria annulata uncharacterized protein XP_951825.1 179384 R 5874 CDS TA15680 3862114 join(180707..180745,180859..180975,181025..181651,181872..182231,182277..182407,182440..183184,183242..183397,183498..183569) 2 1 NC_011099.1 chr2.C.cand.29 - hypothetical protein, PF00481 Protein phosphatase 2C domain; PF00481 Protein phosphatase 2C domain; uncharacterized protein 183569 3862114 TA15680 Theileria annulata uncharacterized protein XP_951826.1 180707 D 5874 CDS TA15675 3862113 183734..190177 2 1 NC_011099.1 uncharacterized protein 190177 3862113 TA15675 Theileria annulata uncharacterized protein XP_951827.1 183734 D 5874 CDS TA15670 3862112 complement(190224..190799) 2 1 NC_011099.1 chr2.cand.485 - hypothetical protein; uncharacterized protein 190799 3862112 TA15670 Theileria annulata uncharacterized protein XP_951828.1 190224 R 5874 CDS TA15665 3862111 join(190929..191024,191156..191424,191575..191630,191662..191715,191855..192953,192983..193038,193275..193414,193451..193614,193644..193780,193928..193990,194103..194347) 2 1 NC_011099.1 chr2.C.cand.32 - PF00112 Papain family cysteine protease; Signal peptide predicted for TA15665 by SignalP 2.0 HMM (Signal peptide probability 0.663, signal anchor probability 0.260) with cleavage site probability 0.331 between residues 24 and 25; cathepsin-like cysteine protease, putative 194347 3862111 TA15665 Theileria annulata cathepsin-like cysteine protease, putative XP_951829.1 190929 D 5874 CDS TA15655 3862109 join(194524..194799,194923..195034,195542..195870) 2 1 NC_011099.1 hypothetical protein, zinc finger, conserved; uncharacterized protein 195870 3862109 TA15655 Theileria annulata uncharacterized protein XP_951830.1 194524 D 5874 CDS TA15650 3862108 complement(195940..196266) 2 1 NC_011099.1 hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA15650 by TMHMM2.0 at aa 10-32, 39-58 and 62-84; Signal anchor predicted for TA15650 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.997) with cleavage site probability 0.000 between residues 37 and 38; uncharacterized protein 196266 3862108 TA15650 Theileria annulata uncharacterized protein XP_951831.1 195940 R 5874 CDS TA15645 3862107 join(196478..196625,196662..196704,196796..196889) 2 1 NC_011099.1 chr2.C.cand.35 - hypothetical protein; uncharacterized protein 196889 3862107 TA15645 Theileria annulata uncharacterized protein XP_951832.1 196478 D 5874 CDS TA15640 3862164 join(198517..198607,198742..198857,199016..199078) 2 1 NC_011099.1 chr2.C.cand.36 - hypothetical protein, conserved; uncharacterized protein 199078 3862164 TA15640 Theileria annulata uncharacterized protein XP_951833.1 198517 D 5874 CDS TA15635 3862163 join(199420..199591,199622..199936,199980..200070,200193..200242,200319..201373) 2 1 NC_011099.1 chr2.C.cand.37 - hypothetical protein; 2 probable transmembrane helices predicted for TA15635 by TMHMM2.0 at aa 91-109 and 239-261; uncharacterized protein 201373 3862163 TA15635 Theileria annulata uncharacterized protein XP_951834.1 199420 D 5874 CDS TA15630 3862162 201674..207469 2 1 NC_011099.1 hypothetical telomeric sfii fragment 8-like protein; chr2.C.cand.38 - htsf8; SfiI-subtelomeric fragment related protein family member, putative 207469 3862162 TA15630 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_951835.1 201674 D 5874 CDS TA15625 3862161 complement(207923..210118) 2 1 NC_011099.1 chr2.cand.482 - hypothetical protein; uncharacterized protein 210118 3862161 TA15625 Theileria annulata uncharacterized protein XP_951836.1 207923 R 5874 CDS TA15620 3862160 complement(join(210361..211275,211337..211369)) 2 1 NC_011099.1 uncharacterized protein 211369 3862160 TA15620 Theileria annulata uncharacterized protein XP_951837.1 210361 R 5874 CDS TA15615 3862159 complement(join(211456..212096,212148..213098,213277..213327,213439..213541)) 2 1 NC_011099.1 chr2.cand.481 - hypothetical protein; uncharacterized protein 213541 3862159 TA15615 Theileria annulata uncharacterized protein XP_951838.1 211456 R 5874 CDS TA15610 3862158 join(213707..213900,214036..214144,214266..214649) 2 1 NC_011099.1 chr2.C.cand.39 - hypothetical protein; 2 probable transmembrane helices predicted for TA15610 by TMHMM2.0 at aa 40-62 and 72-91; uncharacterized protein 214649 3862158 TA15610 Theileria annulata uncharacterized protein XP_951839.1 213707 D 5874 CDS TA15600 3862156 complement(215484..216041) 2 1 NC_011099.1 hypothetical protein, conserved, pfl0490C; uncharacterized protein 216041 3862156 TA15600 Theileria annulata uncharacterized protein XP_951840.1 215484 R 5874 CDS TA15595 3862155 complement(216574..217206) 2 1 NC_011099.1 chr2.cand.480 - hypothetical protein; uncharacterized protein 217206 3862155 TA15595 Theileria annulata uncharacterized protein XP_951841.1 216574 R 5874 CDS TA15590 3862154 complement(217303..222231) 2 1 NC_011099.1 chr2.cand.479 - hypothetical protein; uncharacterized protein 222231 3862154 TA15590 Theileria annulata uncharacterized protein XP_951842.1 217303 R 5874 CDS TA15585 3862153 complement(join(222315..223904,224297..224524)) 2 1 NC_011099.1 NADPH dependent oxidoreductase, putative 224524 3862153 TA15585 Theileria annulata NADPH dependent oxidoreductase, putative XP_951843.1 222315 R 5874 CDS TA15580 3862152 complement(join(224757..229977,230690..231186)) 2 1 NC_011099.1 2 probable transmembrane helices predicted for TA15580 by TMHMM2.0 at aa 292-314 and 409-431; uncharacterized protein 231186 3862152 TA15580 Theileria annulata uncharacterized protein XP_951844.1 224757 R 5874 CDS TA15573 3862151 join(232617..232823,233027..233374) 2 1 NC_011099.1 uncharacterized protein 233374 3862151 TA15573 Theileria annulata uncharacterized protein XP_951845.1 232617 D 5874 CDS TA15570 3862150 complement(233994..234593) 2 1 NC_011099.1 chr2.cand.475 - score = 16.68; Signal peptide predicted for TA15570 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.956 between residues 17 and 18; uncharacterized protein 234593 3862150 TA15570 Theileria annulata uncharacterized protein XP_951846.1 233994 R 5874 CDS TA15565 3862149 complement(join(235315..235691,235743..235853,235887..235959)) 2 1 NC_011099.1 chr2.cand.474 - score = 11.38; uncharacterized protein 235959 3862149 TA15565 Theileria annulata uncharacterized protein XP_951847.1 235315 R 5874 CDS TA15560 3862148 complement(236431..237183) 2 1 NC_011099.1 chr2.cand.473 - score = 13.66; uncharacterized protein 237183 3862148 TA15560 Theileria annulata uncharacterized protein XP_951848.1 236431 R 5874 CDS TA15555 3862147 complement(join(237369..238120,238292..239051)) 2 1 NC_011099.1 chr2.cand.472 - score = 53.84; uncharacterized protein 239051 3862147 TA15555 Theileria annulata uncharacterized protein XP_951849.1 237369 R 5874 CDS TA15545 3862145 complement(join(240036..241210,241442..241909,242195..242399)) 2 1 NC_011099.1 PF00481 Protein phosphatase 2C, signal sequence; protein phosphatase 2c, putative 242399 3862145 TA15545 Theileria annulata protein phosphatase 2c, putative XP_951850.1 240036 R 5874 CDS TA15540 3861630 243145..244146 2 1 NC_011099.1 chr2.C.cand.41 - signal peptide, transmembrane; transmembrane protein, putative; 6 probable transmembrane helices predicted for TA15540 by TMHMM2.0 at aa 13-30, 43-65, 126-143, 153-175, 278-300 and 310-332; Signal anchor predicted for TA15540 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.989) with cleavage site probability 0.002 between residues 30 and 31; uncharacterized protein 244146 3861630 TA15540 Theileria annulata uncharacterized protein XP_951851.1 243145 D 5874 CDS TA15535 3861629 244364..246031 2 1 NC_011099.1 chr2.C.cand.42 - hypothetical protein; uncharacterized protein 246031 3861629 TA15535 Theileria annulata uncharacterized protein XP_951852.1 244364 D 5874 CDS TA15530 3861628 246417..247427 2 1 NC_011099.1 chr2.C.cand.43 - glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase, putative 247427 3861628 TA15530 Theileria annulata glyceraldehyde 3-phosphate dehydrogenase, putative XP_951853.1 246417 D 5874 CDS TA15525 3861627 248012..250699 2 1 NC_011099.1 chr2.C.cand.44 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative 250699 3861627 TA15525 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_951854.1 248012 D 5874 CDS TA15520 3861626 251648..254353 2 1 NC_011099.1 chr2.C.cand.45 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative 254353 3861626 TA15520 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_951855.1 251648 D 5874 CDS TA15515 3861625 complement(join(254720..254842,255050..255233,255472..255583,255646..255756,256041..256392)) 2 1 NC_011099.1 protein phosphatase pp2a; serine/threonine protein phosphatase pp2a catalytic subunit, putative 256392 3861625 TA15515 Theileria annulata serine/threonine protein phosphatase pp2a catalytic subunit, putative XP_951856.1 254720 R 5874 CDS TA15510 3861624 256650..257168 2 1 NC_011099.1 chr2.C.cand.46 - hypothetical protein, conserved, pf11_0393; uncharacterized protein 257168 3861624 TA15510 Theileria annulata uncharacterized protein XP_951857.1 256650 D 5874 CDS TA15505 3861623 257376..257729 2 1 NC_011099.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA15505 by TMHMM2.0 at aa 29-51 and 61-83; Signal anchor predicted for TA15505 by SignalP 2.0 HMM (Signal peptide probability 0.046, signal anchor probability 0.918) with cleavage site probability 0.013 between residues 46 and 47; uncharacterized protein 257729 3861623 TA15505 Theileria annulata uncharacterized protein XP_951858.1 257376 D 5874 CDS TA15500 3861622 join(257935..258190,258400..261068) 2 1 NC_011099.1 transmembrane; 2 probable transmembrane helices predicted for TA15500 by TMHMM2.0 at aa 53-75 and 931-953; Tpr-related protein family member, putative 261068 3861622 TA15500 Theileria annulata Tpr-related protein family member, putative XP_951859.1 257935 D 5874 CDS TA15490 3861620 261580..261939 2 1 NC_011099.1 3 probable transmembrane helices predicted for TA15490 by TMHMM2.0 at aa 7-29, 33-51 and 72-94; GPI-Anchor Signal predicted for TA15490 by DGPI v2.04 with cleavage site probability 2.4940002 near 97; uncharacterized protein 261939 3861620 TA15490 Theileria annulata uncharacterized protein XP_951860.1 261580 D 5874 CDS TA15485 3861619 complement(join(261969..265229,265392..266774)) 2 1 NC_011099.1 chr2.cand.466 - hypothetical protein, transmembrane; 2 probable transmembrane helices predicted for TA15485 by TMHMM2.0 at aa 95-117 and 170-187; uncharacterized protein 266774 3861619 TA15485 Theileria annulata uncharacterized protein XP_951861.1 261969 R 5874 CDS TA15480 3861618 complement(266861..267535) 2 1 NC_011099.1 signal peptide, transmembrane; 4 probable transmembrane helices predicted for TA15480 by TMHMM2.0 at aa 7-29, 44-66, 129-151 and 171-193; uncharacterized protein 267535 3861618 TA15480 Theileria annulata uncharacterized protein XP_951862.1 266861 R 5874 CDS TA15475 3861617 complement(join(267931..268266,268374..268468,268570..268906,268985..269219,269319..269608,269639..269778,269857..270693,270804..271484,271617..272210,272265..272759,272906..275692,275726..276578)) 2 1 NC_011099.1 all_bases.cand.478 -guanylyl cyclase; 20 probable transmembrane helices predicted for TA15475 by TMHMM2.0 at aa 122-144, 148-170, 351-373, 393-415, 1141-1163, 1173-1195, 1226-1248, 1263-1285, 1290-1312, 1327-1349, 1457-1479, 1489-1511, 1518-1537, 1552-1574, 1587-1609, 2125-2147, 2160-2182, 2197-2219, 2252-2274 and 2284-2301; guanylyl cyclase, putative 276578 3861617 TA15475 Theileria annulata guanylyl cyclase, putative XP_951863.1 267931 R 5874 CDS TA15470 3861616 join(277362..277559,277631..277825,277891..278319,278350..278493) 2 1 NC_011099.1 small overlap at the 3' end with gene TA15465; uncharacterized protein 278493 3861616 TA15470 Theileria annulata uncharacterized protein XP_951864.1 277362 D 5874 CDS TA15465 3861615 complement(join(278483..278957,278996..279102,279139..279391,279425..279507,279629..279739)) 2 1 NC_011099.1 small overlap at the 3' end with gene TA15470; uncharacterized protein 279739 3861615 TA15465 Theileria annulata uncharacterized protein XP_951865.1 278483 R 5874 CDS TA15460 3861614 join(279928..280031,280061..280100,280144..280251,280281..280325,280356..280439,280470..280524,280556..280860) 2 1 NC_011099.1 all_bases.C.cand.1354 - hypothetical protein, signal peptide, transmembrane; 1 probable transmembrane helix predicted for TA15460 by TMHMM2.0 at aa 152-174; uncharacterized protein 280860 3861614 TA15460 Theileria annulata uncharacterized protein XP_951866.1 279928 D 5874 CDS TA15455 3861613 complement(join(280944..281366,281398..281469,281500..281647,281678..282034,282065..282137,282169..282505,282540..282904,282938..283220)) 2 1 NC_011099.1 all_bases.cand.476 - hypothetical protein; uncharacterized protein 283220 3861613 TA15455 Theileria annulata uncharacterized protein XP_951867.1 280944 R 5874 CDS TA15450 3861612 283517..285085 2 1 NC_011099.1 chr2.C.cand.52 - hypothetical protein, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA15450 by SignalP 2.0 HMM (Signal peptide probability 0.676, signal anchor probability 0.000) with cleavage site probability 0.375 between residues 21 and 22; GPI-Anchor Signal predicted for TA15450 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 285085 3861612 TA15450 Theileria annulata uncharacterized protein XP_951868.1 283517 D 5874 CDS TA15445 3861586 complement(288091..289464) 2 1 NC_011099.1 chr2.cand.460 - transmembrane protein; 9 probable transmembrane helices predicted for TA15445 by TMHMM2.0 at aa 15-34, 92-111, 121-140, 147-169, 184-203, 233-255, 307-326, 347-369 and 379-401; Tpr-related protein family member, putative 289464 3861586 TA15445 Theileria annulata Tpr-related protein family member, putative XP_951869.1 288091 R 5874 CDS TA15435 3861584 complement(289931..291127) 2 1 NC_011099.1 chr2.cand.459 - hypothetical protein; uncharacterized protein 291127 3861584 TA15435 Theileria annulata uncharacterized protein XP_951870.1 289931 R 5874 CDS TA15430 3861583 complement(join(291715..291858,291891..291945,292015..292175,292281..292367,292407..292523,292562..292723)) 2 1 NC_011099.1 PF02252 Proteasome activator pa28 beta subunit; subunit of proteaseome activator complex, putative 292723 3861583 TA15430 Theileria annulata subunit of proteaseome activator complex, putative XP_951871.1 291715 R 5874 CDS TA15425 3861582 complement(join(292903..293501,293680..293739,293772..294003,294107..294190,294233..294346,294431..294703,294815..294979,295011..295181)) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15425 by TMHMM2.0 at aa 5-27; CTP synthase, putative 295181 3861582 TA15425 Theileria annulata CTP synthase, putative XP_951872.1 292903 R 5874 CDS TA15420 3861581 complement(join(295558..295940,296003..296548,296643..296715,296768..296856,296907..296954,297043..297097)) 2 1 NC_011099.1 chr2.cand.454 - DNA primase small subunit; chr2.cand.455 - score = 10.85; DNA primase small subunit, putative 297097 3861581 TA15420 Theileria annulata DNA primase small subunit, putative XP_951873.1 295558 R 5874 CDS TA15415 3861580 complement(join(297331..297482,297534..297592,297660..297748,297830..297892,297947..298186)) 2 1 NC_011099.1 chr2.cand.453 - hypothetical protein, low similarity to ss-binding protein; Signal peptide predicted for TA15415 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.427 between residues 18 and 19; uncharacterized protein 298186 3861580 TA15415 Theileria annulata uncharacterized protein XP_951874.1 297331 R 5874 CDS TA15410 3861579 join(298611..298859,298918..299085,299159..299450,299485..299588) 2 1 NC_011099.1 chr2.C.cand.53 - PF00025 ADP-ribosylation factor family; adp-ribosylation factor, putative 299588 3861579 TA15410 Theileria annulata adp-ribosylation factor, putative XP_951875.1 298611 D 5874 CDS TA15405 3861578 join(300095..300109,300168..300398) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15405 by TMHMM2.0 at aa 58-80; uncharacterized protein 300398 3861578 TA15405 Theileria annulata uncharacterized protein XP_951876.1 300095 D 5874 CDS TA15400 3861577 300593..300955 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15405 by TMHMM2.0; uncharacterized protein 300955 3861577 TA15400 Theileria annulata uncharacterized protein XP_951877.1 300593 D 5874 CDS TA15395 3861576 join(302062..302120,302156..302198,302286..302929,302997..303312,303392..303958,304034..304141) 2 1 NC_011099.1 chr2.C.cand.54 - myb/SANT DNA binding motifs; DNA-binding protein, putative; 1 probable transmembrane helix predicted for TA15395 by TMHMM2.0 at aa 7-29; uncharacterized protein 304141 3861576 TA15395 Theileria annulata uncharacterized protein XP_951878.1 302062 D 5874 CDS TA15390 3861575 complement(join(304303..304547,304675..304988,305059..305161,305191..305260,305586..305780)) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15390 by TMHMM2.0 at aa 209-231; uncharacterized protein 305780 3861575 TA15390 Theileria annulata uncharacterized protein XP_951879.1 304303 R 5874 CDS TA15380 3861573 join(305886..305931,306034..306168,306282..306380,306428..306482,306516..306649,306796..306899,306930..307019) 2 1 NC_011099.1 chr2.C.cand.55 - PF01066 CDP-alcohol phosphatidyltransferase; 4 probable transmembrane helices predicted for TA15380 by TMHMM2.0 at aa 20-42, 91-113, 140-162 and 182-201; CDP-diacylglycerol-inositol 3-phosphatidyltransferase, putative 307019 3861573 TA15380 Theileria annulata CDP-diacylglycerol-inositol 3-phosphatidyltransferase, putative XP_951880.1 305886 D 5874 CDS TA15375 3861572 join(307330..307468,307682..307804,307884..308146,308241..308429,308548..308600,308690..308747,308813..308887) 2 1 NC_011099.1 chr2.C.cand.56 -snap protein; SNAP protein, putative 308887 3861572 TA15375 Theileria annulata SNAP protein, putative XP_951881.1 307330 D 5874 CDS TA15370 3861571 join(308985..309013,309090..309120,309234..309538,309670..310213,310368..310520) 2 1 NC_011099.1 chr2.C.cand.57 - WW, FF domains; uncharacterized protein 310520 3861571 TA15370 Theileria annulata uncharacterized protein XP_951882.1 308985 D 5874 CDS TA15365 3861570 join(311568..311900,312062..312153,312301..312445,312550..313380) 2 1 NC_011099.1 chr2.C.cand.58 - Cytidylyltransferase; CTP:phosphorylcholine cytidylyltransferase, putative 313380 3861570 TA15365 Theileria annulata CTP:phosphorylcholine cytidylyltransferase, putative XP_951883.1 311568 D 5874 CDS TA15360 3861569 complement(join(314180..314387,314561..314662,314738..314880,314977..315180)) 2 1 NC_011099.1 uncharacterized protein 315180 3861569 TA15360 Theileria annulata uncharacterized protein XP_951884.1 314180 R 5874 CDS TA15355 3861568 complement(315989..316210) 2 1 NC_011099.1 chr2.cand.452 - score = 6.55; uncharacterized protein 316210 3861568 TA15355 Theileria annulata uncharacterized protein XP_951885.1 315989 R 5874 CDS TA15350 3861567 complement(join(316449..316643,316824..316907,316940..317029)) 2 1 NC_011099.1 chr2.cand.451 - score = 12.14; uncharacterized protein 317029 3861567 TA15350 Theileria annulata uncharacterized protein XP_951886.1 316449 R 5874 CDS TA15345 3861755 complement(join(317104..317318,317381..317919,318033..318220,318299..318493,318538..318650,318685..318766,318809..318959,319021..319250,319282..319317)) 2 1 NC_011099.1 chr2.cand.450 - score = 34.02; 1 probable transmembrane helix predicted for TA15345 by TMHMM2.0 at aa 512-534; uncharacterized protein 319317 3861755 TA15345 Theileria annulata uncharacterized protein XP_951887.1 317104 R 5874 CDS TA15340 3861754 319965..320282 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15340 by TMHMM2.0 at aa 15-36; Signal anchor predicted for TA15340 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.721) with cleavage site probability 0.001 between residues 31 and 32; uncharacterized protein 320282 3861754 TA15340 Theileria annulata uncharacterized protein XP_951888.1 319965 D 5874 CDS TA15335 3861753 join(320764..321178,321285..321419,321451..321587,321636..321732,321854..321909,321939..322100,322215..322332,322362..322449,322490..322559,322691..322892,323024..323206,323293..323366) 2 1 NC_011099.1 all_bases.cand.1290 - ubiquitin carboxyl-terminal hydrolase, zinc finger; ubiquitin carboxyl-terminal hydrolase, putative 323366 3861753 TA15335 Theileria annulata ubiquitin carboxyl-terminal hydrolase, putative XP_951889.1 320764 D 5874 CDS TA15330 3861752 join(323527..323625,323792..323939,324080..325083) 2 1 NC_011099.1 chr2.C.cand.61 - rna binding protein; SR protein, putative; uncharacterized protein 325083 3861752 TA15330 Theileria annulata uncharacterized protein XP_951890.1 323527 D 5874 CDS TA15325 3861751 join(325167..325313,325340..327658) 2 1 NC_011099.1 hypothetical protein; 1 probable transmembrane helix predicted for TA15325 by TMHMM2.0 at aa 785-807; uncharacterized protein 327658 3861751 TA15325 Theileria annulata uncharacterized protein XP_951891.1 325167 D 5874 CDS TA15320 3861750 join(327688..327724,327736..328919) 2 1 NC_011099.1 uncharacterized protein 328919 3861750 TA15320 Theileria annulata uncharacterized protein XP_951892.1 327688 D 5874 CDS TA15315 3861749 complement(329081..329518) 2 1 NC_011099.1 2 probable transmembrane helices predicted for TA15315 by TMHMM2.0 at aa 50-72 and 93-115; Tpr-related protein family member, putative 329518 3861749 TA15315 Theileria annulata Tpr-related protein family member, putative XP_951893.1 329081 R 5874 CDS TA15310 3861748 329875..330693 2 1 NC_011099.1 chr2.C.cand.63 - score = 25.02; 1 probable transmembrane helix predicted for TA15310 by TMHMM2.0 at aa 249-271; Tpr-related protein family member, putative 330693 3861748 TA15310 Theileria annulata Tpr-related protein family member, putative XP_951894.1 329875 D 5874 CDS TA15305 3861747 331395..333110 2 1 NC_011099.1 chr2.C.cand.64 - signal peptide; Signal peptide predicted for TA15305 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.002) with cleavage site probability 0.635 between residues 22 and 23; SfiI-subtelomeric fragment related protein family member, putative 333110 3861747 TA15305 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_951895.1 331395 D 5874 CDS TA15300 3861746 join(333694..333787,333882..334181,334211..334366,334398..335149,335219..335634,335665..336037) 2 1 NC_011099.1 PF01535 PPR repeat; uncharacterized protein 336037 3861746 TA15300 Theileria annulata uncharacterized protein XP_951896.1 333694 D 5874 CDS TA15295 3861745 336327..337289 2 1 NC_011099.1 chr2.C.cand.67 - hypothetical protein; uncharacterized protein 337289 3861745 TA15295 Theileria annulata uncharacterized protein XP_951897.1 336327 D 5874 CDS TA15290 3861744 337616..338284 2 1 NC_011099.1 chr2.C.cand.68 - hypothetical protein; uncharacterized protein 338284 3861744 TA15290 Theileria annulata uncharacterized protein XP_951898.1 337616 D 5874 CDS TA15285 3861743 complement(338434..339294) 2 1 NC_011099.1 chr2.cand.448 - signal peptide; secreted protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA15285 by SignalP 2.0 HMM (Signal peptide probability 0.912, signal anchor probability 0.000) with cleavage site probability 0.880 between residues 15 and 16; uncharacterized protein 339294 3861743 TA15285 Theileria annulata uncharacterized protein XP_951899.1 338434 R 5874 CDS TA15270 3861740 complement(join(339368..339853,339885..339995)) 2 1 NC_011099.1 hypothetical protein, conserved, mal13p1.159; uncharacterized protein 339995 3861740 TA15270 Theileria annulata uncharacterized protein XP_951900.1 339368 R 5874 CDS TA15265 3861739 341038..342780 2 1 NC_011099.1 chr2.C.cand.69 - signal peptide; secreted protein, putative; 1 probable transmembrane helix predicted for TA15265 by TMHMM2.0 at aa 12-29; Signal peptide predicted for TA15265 by SignalP 2.0 HMM (Signal peptide probability 0.952, signal anchor probability 0.047) with cleavage site probability 0.555 between residues 34 and 35; uncharacterized protein 342780 3861739 TA15265 Theileria annulata uncharacterized protein XP_951901.1 341038 D 5874 CDS TA15260 3861738 join(343138..343544,343595..343658) 2 1 NC_011099.1 chr2.C.cand.70 - hypothetical protein; uncharacterized protein 343658 3861738 TA15260 Theileria annulata uncharacterized protein XP_951902.1 343138 D 5874 CDS TA15255 3861737 complement(join(343717..344590,344634..345370)) 2 1 NC_011099.1 chr2.cand.447 - farnesyltransferase beta subunit; farnesyltransferase beta subunit, putative 345370 3861737 TA15255 Theileria annulata farnesyltransferase beta subunit, putative XP_951903.1 343717 R 5874 CDS TA15250 3861669 345563..347830 2 1 NC_011099.1 chr2.C.cand.71 - hypothetical protein, PF03133 Tubulin-tyrosine ligase family; uncharacterized protein 347830 3861669 TA15250 Theileria annulata uncharacterized protein XP_951904.1 345563 D 5874 CDS TA15245 3861668 348115..350490 2 1 NC_011099.1 chr2.C.cand.72 - hypothetical protein; uncharacterized protein 350490 3861668 TA15245 Theileria annulata uncharacterized protein XP_951905.1 348115 D 5874 CDS TA15240 3861667 complement(join(350866..351259,351296..351350,351386..351521,351553..351582)) 2 1 NC_011099.1 uncharacterized protein 351582 3861667 TA15240 Theileria annulata uncharacterized protein XP_951906.1 350866 R 5874 CDS TA15235 3861666 complement(351786..352166) 2 1 NC_011099.1 chr2.cand.445 - score = 6.38; 1 probable transmembrane helix predicted for TA15235 by TMHMM2.0 at aa 10-32; uncharacterized protein 352166 3861666 TA15235 Theileria annulata uncharacterized protein XP_951907.1 351786 R 5874 CDS TA15230 3861665 complement(join(352573..353360,353597..354481,354613..354622)) 2 1 NC_011099.1 RNA binding protein; nucleolar, RNA-binding protein, putative 354622 3861665 TA15230 Theileria annulata nucleolar, RNA-binding protein, putative XP_951908.1 352573 R 5874 CDS TA15225 3861664 complement(356010..356636) 2 1 NC_011099.1 chr2.cand.442 - hypothetical protein, conserved, pfe1175W; uncharacterized protein 356636 3861664 TA15225 Theileria annulata uncharacterized protein XP_951909.1 356010 R 5874 CDS TA15215 3861662 complement(join(356966..357235,357376..357597)) 2 1 NC_011099.1 chr2.cand.441 - ATP synthase subunit C, signal peptide, mitochondrial; 2 probable transmembrane helices predicted for TA15215 by TMHMM2.0 at aa 93-115 and 135-157; GPI-Anchor Signal predicted for TA15215 by DGPI v2.04, no cleavage site predicted; ATP synthase subunit C, mitochondrial, putative 357597 3861662 TA15215 Theileria annulata ATP synthase subunit C, mitochondrial, putative XP_951910.1 356966 R 5874 CDS TA15210 3861661 358212..358778 2 1 NC_011099.1 chr2.C.cand.74 - 60S ribosomal subunit protein l18b; 60S ribosomal subunit protein L18, putative 358778 3861661 TA15210 Theileria annulata 60S ribosomal subunit protein L18, putative XP_951911.1 358212 D 5874 CDS TA15205 3861660 complement(join(359799..364795,364870..364879)) 2 1 NC_011099.1 htsf20p3-like; SfiI-subtelomeric fragment related protein family member, putative 364879 3861660 TA15205 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_951912.1 359799 R 5874 CDS TA15200 3861659 join(365404..365406,365478..365829,365977..366290) 2 1 NC_011099.1 60S ribosomal subunit protein L18, putative 366290 3861659 TA15200 Theileria annulata 60S ribosomal subunit protein L18, putative XP_951913.1 365404 D 5874 CDS TA15195 3861658 complement(join(366344..366577,366664..366858,367017..367394)) 2 1 NC_011099.1 chr2.cand.439 - hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA15195 by TMHMM2.0 at aa 217-239; Signal peptide predicted for TA15195 by SignalP 2.0 HMM (Signal peptide probability 0.910, signal anchor probability 0.000) with cleavage site probability 0.477 between residues 15 and 16; uncharacterized protein 367394 3861658 TA15195 Theileria annulata uncharacterized protein XP_951914.1 366344 R 5874 CDS TA15190 3861657 complement(join(367439..367545,367614..367731,367955..367994,368028..368088,368172..368495,368801..368819)) 2 1 NC_011099.1 chr2.cand.438 - rab; small GTP-binding protein, Rab family, putative 368819 3861657 TA15190 Theileria annulata small GTP-binding protein, Rab family, putative XP_951915.1 367439 R 5874 CDS TA15185 3861656 complement(join(368956..369131,369247..369932,369969..370282)) 2 1 NC_011099.1 chr2.cand.437 - hypothetical protein, conserved,mal6p1.300, PF01171 PP-loop family UPF0021; uncharacterized protein 370282 3861656 TA15185 Theileria annulata uncharacterized protein XP_951916.1 368956 R 5874 CDS TA15180 3861655 complement(371425..382566) 2 1 NC_011099.1 chr2.cand.436 - hypothetical protein; uncharacterized protein 382566 3861655 TA15180 Theileria annulata uncharacterized protein XP_951917.1 371425 R 5874 CDS TA15175 3861654 complement(382940..384091) 2 1 NC_011099.1 zinc finger protein; uncharacterized protein 384091 3861654 TA15175 Theileria annulata uncharacterized protein XP_951918.1 382940 R 5874 CDS TA15170 3861653 complement(384335..384583) 2 1 NC_011099.1 zinc finger protein; uncharacterized protein 384583 3861653 TA15170 Theileria annulata uncharacterized protein XP_951919.1 384335 R 5874 CDS TA15165 3861652 complement(join(385943..386463,386704..387140,387269..387444,387638..387690,387787..388306,388375..388437)) 2 1 NC_011099.1 chr2.cand.434 - score = 22.10; uncharacterized protein 388437 3861652 TA15165 Theileria annulata uncharacterized protein XP_951920.1 385943 R 5874 CDS TA15160 3861651 388644..389735 2 1 NC_011099.1 chr2.C.cand.79 - score = 13.12; uncharacterized protein 389735 3861651 TA15160 Theileria annulata uncharacterized protein XP_951921.1 388644 D 5874 CDS TA15155 3861650 390118..391194 2 1 NC_011099.1 chr2.C.cand.80 - score = 27.35; uncharacterized protein 391194 3861650 TA15155 Theileria annulata uncharacterized protein XP_951922.1 390118 D 5874 CDS TA15150 3862203 391394..391615 2 1 NC_011099.1 chr2.C.cand.81 - score = 6.80; 2 probable transmembrane helices predicted for TA15150 by TMHMM2.0 at aa 21-43 and 48-70; Signal anchor predicted for TA15150 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.829) with cleavage site probability 0.000 between residues 16 and 17; uncharacterized protein 391615 3862203 TA15150 Theileria annulata uncharacterized protein XP_951923.1 391394 D 5874 CDS TA15145 3862202 complement(join(392090..392823,392898..393576)) 2 1 NC_011099.1 chr2.cand.433 - transmembrane; membrane protein, putative; 5 probable transmembrane helices predicted for TA15145 by TMHMM2.0 at aa 133-155, 243-265, 280-302, 309-331 and 367-389; uncharacterized protein 393576 3862202 TA15145 Theileria annulata uncharacterized protein XP_951924.1 392090 R 5874 CDS TA15140 3862201 394105..394857 2 1 NC_011099.1 chr2.C.cand.82 - score = 15.65; uncharacterized protein 394857 3862201 TA15140 Theileria annulata uncharacterized protein XP_951925.1 394105 D 5874 CDS TA15135 3862200 join(394893..395121,395169..395248,395281..395362,395529..395664,395724..395832) 2 1 NC_011099.1 chr2.C.cand.83 - score = 21.23; uncharacterized protein 395832 3862200 TA15135 Theileria annulata uncharacterized protein XP_951926.1 394893 D 5874 CDS TA15130 3862199 complement(join(395899..396051,396214..396480)) 2 1 NC_011099.1 chr2.cand.432 - score = 7.52; uncharacterized protein 396480 3862199 TA15130 Theileria annulata uncharacterized protein XP_951927.1 395899 R 5874 CDS TA15125 3862198 complement(396787..404127) 2 1 NC_011099.1 hypothetical protein, PI3Kc Phosphoinositide 3-kinase, catalytic domain; 5 probable transmembrane helices predicted for TA15125 by TMHMM2.0 at aa 198-220, 506-528, 678-700, 768-790 and 957-979; uncharacterized protein 404127 3862198 TA15125 Theileria annulata uncharacterized protein XP_951928.1 396787 R 5874 CDS TA15120 3862197 join(404320..404709,404818..405546) 2 1 NC_011099.1 all_bases.cand.1308 - similar to chromosome assembly protein; chromatin assembly protein, putative 405546 3862197 TA15120 Theileria annulata chromatin assembly protein, putative XP_951929.1 404320 D 5874 CDS TA15110 3862195 complement(405559..407643) 2 1 NC_011099.1 uncharacterized protein 407643 3862195 TA15110 Theileria annulata uncharacterized protein XP_951930.1 405559 R 5874 CDS TA15105 3862194 complement(join(407852..408056,408170..408256,408287..408467,408543..408732)) 2 1 NC_011099.1 chr2.cand.429 - score = 10.05 PF01265 cytochrome c/c1 heme lyase; cytochrome C-type heme lyase, putative 408732 3862194 TA15105 Theileria annulata cytochrome C-type heme lyase, putative XP_951931.1 407852 R 5874 CDS TA15100 3862193 408933..409517 2 1 NC_011099.1 chr2.C.cand.85 - score = 18.79; uncharacterized protein 409517 3862193 TA15100 Theileria annulata uncharacterized protein XP_951932.1 408933 D 5874 CDS TA15095 3862192 complement(409569..410723) 2 1 NC_011099.1 chr2.cand.428 - score = 39.12; Tpr-related protein family member, putative 410723 3862192 TA15095 Theileria annulata Tpr-related protein family member, putative XP_951933.1 409569 R 5874 CDS TA15090 3862191 join(411068..411081,411128..412205) 2 1 NC_011099.1 Tpr-related protein family member, putative 412205 3862191 TA15090 Theileria annulata Tpr-related protein family member, putative XP_951934.1 411068 D 5874 CDS TA15085 3862190 complement(join(412326..414151,414283..415081)) 2 1 NC_011099.1 chr2.cand.427 - score = 63.23; 2 probable transmembrane helices predicted for TA15085 by TMHMM2.0 at aa 785-807 and 843-862; Tpr-related protein family member, putative 415081 3862190 TA15085 Theileria annulata Tpr-related protein family member, putative XP_951935.1 412326 R 5874 CDS TA15080 3862189 complement(join(415099..415581,415734..415757)) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15080 by TMHMM2.0 at aa 148-167; Tpr-related protein family member, putative 415757 3862189 TA15080 Theileria annulata Tpr-related protein family member, putative XP_951936.1 415099 R 5874 CDS TA15075 3862188 complement(join(415799..415926,415975..416316,416365..416545,416641..416740,416776..416909,416999..417052)) 2 1 NC_011099.1 chr2.cand.426 - phosphatidylinositol/phosphatidylcholine transfer protein; phosphatidylinositol/phosphatidylcholine transfer protein, putative 417052 3862188 TA15075 Theileria annulata phosphatidylinositol/phosphatidylcholine transfer protein, putative XP_951937.1 415799 R 5874 CDS TA15070 3862187 417503..417748 2 1 NC_011099.1 very hypothetical protein, but gene in this region somewhere; uncharacterized protein 417748 3862187 TA15070 Theileria annulata uncharacterized protein XP_951938.1 417503 D 5874 CDS TA15065 3862186 complement(join(417880..418634,418788..418794)) 2 1 NC_011099.1 chr2.cand.425 - ribosomal protein s2; ribosomal protein S2, putative 418794 3862186 TA15065 Theileria annulata ribosomal protein S2, putative XP_951939.1 417880 R 5874 CDS TA15055 3862223 join(419226..419435,419548..419762,419828..420237,420288..421054) 2 1 NC_011099.1 chr2.C.cand.87 - signal peptide; secreted protein, putative; Signal peptide predicted for TA15055 by SignalP 2.0 HMM (Signal peptide probability 0.902, signal anchor probability 0.000) with cleavage site probability 0.732 between residues 17 and 18; uncharacterized protein 421054 3862223 TA15055 Theileria annulata uncharacterized protein XP_951940.1 419226 D 5874 CDS TA15050 3862222 complement(421117..422664) 2 1 NC_011099.1 chr2.cand.424 - hypothetical protein; Tpr-related protein family member, putative 422664 3862222 TA15050 Theileria annulata Tpr-related protein family member, putative XP_951941.1 421117 R 5874 CDS TA15045 3862221 complement(join(422852..423022,423088..423194,423357..423381)) 2 1 NC_011099.1 chr2.cand.423 - hypothetical protein; uncharacterized protein 423381 3862221 TA15045 Theileria annulata uncharacterized protein XP_951942.1 422852 R 5874 CDS TA15040 3862220 join(423731..423794,423871..423993,424066..424127,424159..424281,424311..424486,424534..424639) 2 1 NC_011099.1 PF01529 DHHC zinc finger domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal anchor predicted for TA15040 by SignalP 2.0 HMM (Signal peptide probabilty 0.003, signal anchor probability 0.601) with cleavage site probability 0.001 between residues 26 and 27; 2 probable transmembrane helices predicted for TA15040 by TMHMM2.0 at aa 78-100 and 120-142; uncharacterized protein 424639 3862220 TA15040 Theileria annulata uncharacterized protein XP_951943.1 423731 D 5874 CDS TA15035 3862219 join(424709..429625,429700..429813,429910..430036,430106..430601,430652..431258,431336..431411,431456..431673) 2 1 NC_011099.1 chr2.C.cand.88 - hypothetical protein; uncharacterized protein 431673 3862219 TA15035 Theileria annulata uncharacterized protein XP_951944.1 424709 D 5874 CDS TA15030 3862218 join(431751..431897,431930..432068,432098..432414) 2 1 NC_011099.1 chr2.C.cand.88 - mitochondrial/apicoplast ribosomal protein l7/l12; ribosomal protein l7/l12, mitochondrial/apicoplast, putative 432414 3862218 TA15030 Theileria annulata ribosomal protein l7/l12, mitochondrial/apicoplast, putative XP_951945.1 431751 D 5874 CDS TA15025 3862217 432645..433166 2 1 NC_011099.1 chr2.C.cand.89 - hypothetical protein; uncharacterized protein 433166 3862217 TA15025 Theileria annulata uncharacterized protein XP_951946.1 432645 D 5874 CDS TA15020 3862216 join(433250..433740,433777..434682,434852..434889,435020..435954) 2 1 NC_011099.1 chr2.C.cand.90 - hypothetical protein; uncharacterized protein 435954 3862216 TA15020 Theileria annulata uncharacterized protein XP_951947.1 433250 D 5874 CDS TA15015 3862215 complement(join(436106..437542,437602..437763,437836..438702)) 2 1 NC_011099.1 small overlap at the 5' end with gene TA15010; Tpr-related protein family member, putative 438702 3862215 TA15015 Theileria annulata Tpr-related protein family member, putative XP_951948.1 436106 R 5874 CDS TA15010 3862214 join(438679..438687,438736..439512,439565..439992,440030..440750) 2 1 NC_011099.1 small overlap at the 5' end with gene TA15015; uncharacterized protein 440750 3862214 TA15010 Theileria annulata uncharacterized protein XP_951949.1 438679 D 5874 CDS TA14995 3862211 440812..441330 2 1 NC_011099.1 uncharacterized protein 441330 3862211 TA14995 Theileria annulata uncharacterized protein XP_951950.1 440812 D 5874 CDS TA14990 3862210 complement(join(441402..442600,442698..445108,445220..445292,445360..445534)) 2 1 NC_011099.1 chr2.cand.419 - hypothetical membrane protein, similarity to ATPases; 9 probable transmembrane helices predicted for TA14990 by TMHMM2.0 at aa 69-91, 101-123, 420-442, 446-468, 1082-1104, 1109-1131, 1161-1183, 1213-1235 and 1248-1267; cation transporting ATPase, putative 445534 3862210 TA14990 Theileria annulata cation transporting ATPase, putative XP_951951.1 441402 R 5874 CDS TA14985 3862209 join(446213..446644,446794..447023,447129..447198,447267..447631,447794..447836,447914..448316,448404..449156,449332..449508,449641..450149) 2 1 NC_011099.1 chr2.C.cand.95 - PF00521 DNA gyrase/topoisomerase IV, subunit A; Signal peptide predicted for TA14985 by SignalP 2.0 HMM (Signal peptide probability 0.722, signal anchor probability 0.000) with cleavage site probability 0.263 between residues 22 and 23; topoisomerase IV subunit A, putative 450149 3862209 TA14985 Theileria annulata topoisomerase IV subunit A, putative XP_951952.1 446213 D 5874 CDS TA14980 3862208 complement(join(450305..450631,450794..451765)) 2 1 NC_011099.1 chr2.cand.418 - transmembrane; membrane protein, putative; 2 probable transmembrane helices predicted for TA14980 by TMHMM2.0 at aa 283-305 and 379-401; uncharacterized protein 451765 3862208 TA14980 Theileria annulata uncharacterized protein XP_951953.1 450305 R 5874 CDS TA14975 3862207 join(451978..452100,452229..452642,452757..453086,453151..453477,453587..453730) 2 1 NC_011099.1 chr2.C.cand.96 - PF01399 PCI domain; 26S proteasome non-ATPase regulatory subunit 12, putative 453730 3862207 TA14975 Theileria annulata 26S proteasome non-ATPase regulatory subunit 12, putative XP_951954.1 451978 D 5874 CDS TA14970 3862206 join(454242..454257,454292..454375,454469..454553,454621..454903) 2 1 NC_011099.1 chr2.C.cand.98 - translation initiation factor eif-1a; translation initiation factor eif-1A, putative 454903 3862206 TA14970 Theileria annulata translation initiation factor eif-1A, putative XP_951955.1 454242 D 5874 CDS TA14965 3862205 complement(join(455241..455455,455557..455667,455717..455816,455960..456078,456158..456371,456503..456733)) 2 1 NC_011099.1 chr2.cand.417 - PF01000 RNA polymerase Rpb3/RpoA insert domain; DNA-directed RNA polymerases I and III, 40 kDa polypeptide, putative 456733 3862205 TA14965 Theileria annulata DNA-directed RNA polymerases I and III, 40 kDa polypeptide, putative XP_951956.1 455241 R 5874 CDS TA14960 3862204 join(458320..458540,458658..458891,458918..459028,459157..459226,459388..459561,459686..459934) 2 1 NC_011099.1 chr2.C.cand.99 - hypothetical protein; uncharacterized protein 459934 3862204 TA14960 Theileria annulata uncharacterized protein XP_951957.1 458320 D 5874 CDS TA14955 3862242 460695..478121 2 1 NC_011099.1 chr2.C.cand.101 - hypothetical protein, signal peptide; hypothetical protein, signal peptide; Signal peptide predicted for TA14955 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.980 between residues 19 and 20; uncharacterized protein 478121 3862242 TA14955 Theileria annulata uncharacterized protein XP_951958.1 460695 D 5874 CDS TA14950 3862241 join(478628..479963,480000..480322) 2 1 NC_011099.1 chr2.C.cand.102 - transmembrane; membrane protein, putative; 10 probable transmembrane helices predicted for TA14950 by TMHMM2.0 at aa 21-38, 73-90, 97-119, 129-148, 155-177, 192-214, 334-353, 368-390, 403-425 and 468-490; uncharacterized protein 480322 3862241 TA14950 Theileria annulata uncharacterized protein XP_951959.1 478628 D 5874 CDS TA14945 3862240 480869..482779 2 1 NC_011099.1 chr2.C.cand.103 - signal peptide; secreted protein, putative; Signal peptide predicted for TA14945 by SignalP 2.0 HMM (Signal peptide probability 0.941, signal anchor probability 0.004) with cleavage site probability 0.495 between residues 20 and 21; uncharacterized protein 482779 3862240 TA14945 Theileria annulata uncharacterized protein XP_951960.1 480869 D 5874 CDS TA14940 3862239 join(483065..483145,483215..483355,483473..483607,483680..483775,483827..483915,483945..484092,484123..484356) 2 1 NC_011099.1 all_bases.cand.1326 - hypothetical protein; uncharacterized protein 484356 3862239 TA14940 Theileria annulata uncharacterized protein XP_951961.1 483065 D 5874 CDS TA14935 3862238 484707..485045 2 1 NC_011099.1 chr2.C.cand.106 - mitochondrial ribosomal protein s14 precursor, putative; mitochondrial ribosomal protein S14 precursor, putative 485045 3862238 TA14935 Theileria annulata mitochondrial ribosomal protein S14 precursor, putative XP_951962.1 484707 D 5874 CDS TA14930 3862237 complement(join(485111..485289,485344..485411,485483..486228)) 2 1 NC_011099.1 chr2.cand.415 - hypothetical protein; uncharacterized protein 486228 3862237 TA14930 Theileria annulata uncharacterized protein XP_951963.1 485111 R 5874 CDS TA14925 3862236 complement(join(486279..486348,486411..486486,486555..486582,486616..486846)) 2 1 NC_011099.1 chr2.cand.414 - hypothetical protein; uncharacterized protein 486846 3862236 TA14925 Theileria annulata uncharacterized protein XP_951964.1 486279 R 5874 CDS TA14920 3862235 487582..489627 2 1 NC_011099.1 chr2.C.cand.107 - organellar heat shock protein, hsp70; heat shock protein HSP70 homologue, putative 489627 3862235 TA14920 Theileria annulata heat shock protein HSP70 homologue, putative XP_951965.1 487582 D 5874 CDS TA14915 3862234 complement(489700..491271) 2 1 NC_011099.1 chr2.cand.413 - hypothetical protein; uncharacterized protein 491271 3862234 TA14915 Theileria annulata uncharacterized protein XP_951966.1 489700 R 5874 CDS TA14910 3862233 complement(491316..491669) 2 1 NC_011099.1 chr2.cand.412 - hypothetical protein; uncharacterized protein 491669 3862233 TA14910 Theileria annulata uncharacterized protein XP_951967.1 491316 R 5874 CDS TA14905 3862232 join(492253..492320,492398..492552,492585..492745,492776..492874,492910..493090,493120..493332,493405..493814) 2 1 NC_011099.1 chr2.C.cand.109 - eukaryotic peptide chain release factor; eukaryotic peptide chain release factor, putative 493814 3862232 TA14905 Theileria annulata eukaryotic peptide chain release factor, putative XP_951968.1 492253 D 5874 CDS TA14900 3862231 complement(join(493920..493964,493994..494069,494100..494281,494310..494387,494451..494637,494695..499052)) 2 1 NC_011099.1 all_bases.C.cand.493 - PF03178 CPSF A subunit region; CPSF (cleavage and polyadenylation specific factor), subunit A, putative 499052 3862231 TA14900 Theileria annulata CPSF (cleavage and polyadenylation specific factor), subunit A, putative XP_951969.1 493920 R 5874 CDS TA14885 3862228 500033..501613 2 1 NC_011099.1 chr2.C.cand.110 - hypothetical protein; uncharacterized protein 501613 3862228 TA14885 Theileria annulata uncharacterized protein XP_951970.1 500033 D 5874 CDS TA14880 3862227 complement(join(501775..502013,502052..502252,502311..503985)) 2 1 NC_011099.1 chr2.cand.410 - PF00152 tRNA synthetases class II (D, K and N); asparaginyl-trna synthetase, putative 503985 3862227 TA14880 Theileria annulata asparaginyl-trna synthetase, putative XP_951971.1 501775 R 5874 CDS TA14875 3862226 join(504299..504383,504502..504541,504605..504683,504720..505166) 2 1 NC_011099.1 chr2.C.cand.111 - hypothetical protein; uncharacterized protein 505166 3862226 TA14875 Theileria annulata uncharacterized protein XP_951972.1 504299 D 5874 CDS TA14870 3862225 complement(join(505174..505531,505570..505882,505938..506184)) 2 1 NC_011099.1 chr2.cand.409 - hypothetical protein; uncharacterized protein 506184 3862225 TA14870 Theileria annulata uncharacterized protein XP_951973.1 505174 R 5874 CDS TA14865 3862224 complement(join(506364..506469,506499..506653,506732..507513,507545..507941)) 2 1 NC_011099.1 ankyrin repeat protein, putative; chr2.cand.408 - PF00023 Ankyrin repeat; uncharacterized protein 507941 3862224 TA14865 Theileria annulata uncharacterized protein XP_951974.1 506364 R 5874 CDS TA14860 3862302 join(508415..508501,508545..509058,509108..509215,509279..509458,509505..509641) 2 1 NC_011099.1 chr2.C.cand.112 - score = 39.77hypothetical protein, conserved, pfe0995C; uncharacterized protein 509641 3862302 TA14860 Theileria annulata uncharacterized protein XP_951975.1 508415 D 5874 CDS TA14855 3862301 complement(join(509790..510031,510082..510227,510304..510440,510561..510584)) 2 1 NC_011099.1 chr2.cand.407 - PF02338 OTU-like cysteine protease, not good gene model; OTU-like cysteine protease, putative; uncharacterized protein 510584 3862301 TA14855 Theileria annulata uncharacterized protein XP_951976.1 509790 R 5874 CDS TA14850 3862300 join(510699..510811,510843..511408,511467..511529,511561..511760) 2 1 NC_011099.1 PF00535 Glycosyl transferase; dolichol phosphate mannose synthase, putative 511760 3862300 TA14850 Theileria annulata dolichol phosphate mannose synthase, putative XP_951977.1 510699 D 5874 CDS TA14845 3862299 512869..513597 2 1 NC_011099.1 chr2.C.cand.114 - hypothetical protein; uncharacterized protein 513597 3862299 TA14845 Theileria annulata uncharacterized protein XP_951978.1 512869 D 5874 CDS TA14840 3862298 complement(join(514435..514646,514759..515119,515242..515478,515506..516561)) 2 1 NC_011099.1 chr2.cand.406 - TpR-like protein; 2 probable transmembrane helices predicted for TA14840 by TMHMM2.0 at aa 21-43 and 591-613; Tpr-related protein family member, putative 516561 3862298 TA14840 Theileria annulata Tpr-related protein family member, putative XP_951979.1 514435 R 5874 CDS TA14835 3862297 complement(516786..518138) 2 1 NC_011099.1 chr2.cand.405 - hypothetical protein; uncharacterized protein 518138 3862297 TA14835 Theileria annulata uncharacterized protein XP_951980.1 516786 R 5874 CDS TA14830 3862296 join(518552..518657,518708..519032,519104..519380,519454..520683,520761..521000,521105..521270,521341..521459,521510..521641,521719..521904,521938..522027) 2 1 NC_011099.1 chr2.C.cand.115 - G-beta protein; G-beta protein, transducin-like, putative 522027 3862296 TA14830 Theileria annulata G-beta protein, transducin-like, putative XP_951981.1 518552 D 5874 CDS TA14825 3862295 join(522433..522537,522598..522861,522921..523628,523661..524172,524254..524560,524690..524891,525012..525145) 2 1 NC_011099.1 chr2.C.cand.116 - ABC transporter; 5 probable transmembrane helices predicted for TA14825 by TMHMM2.0 at aa 54-76, 96-113, 173-195, 199-221 and 320-342; MDR-family, ABC transporter, putative 525145 3862295 TA14825 Theileria annulata MDR-family, ABC transporter, putative XP_951982.1 522433 D 5874 CDS TA14820 3862294 join(525904..526011,526058..526195,526228..526346,526378..526678,526730..526777) 2 1 NC_011099.1 all_bases.cand.1338 - PF01652 Eukaryotic initiation factor 4E; initiation factor 4E, putative 526777 3862294 TA14820 Theileria annulata initiation factor 4E, putative XP_951983.1 525904 D 5874 CDS TA14815 3862293 join(526814..526917,526951..527054,527147..527231,527267..527339,527369..527435,527465..527507,527537..527633,527663..527779,527812..527896,527965..528048,528078..528175) 2 1 NC_011099.1 chr2.C.cand.118 - WD40 G-beta protein; G-beta protein, putative; uncharacterized protein 528175 3862293 TA14815 Theileria annulata uncharacterized protein XP_951984.1 526814 D 5874 CDS TA14810 3862292 complement(join(528205..529226,529288..529687)) 2 1 NC_011099.1 chr2.cand.404 - transmembrane; membrane protein, putative; 8 probable transmembrane helices predicted for TA14810 by TMHMM2.0 at aa 37-56, 66-88, 124-143, 153-172, 185-207, 238-260, 320-342 and 418-437; uncharacterized protein 529687 3862292 TA14810 Theileria annulata uncharacterized protein XP_951985.1 528205 R 5874 CDS TA14805 3862291 complement(join(530047..530343,530380..530497,530588..532621,532672..532888,532977..533037)) 2 1 NC_011099.1 chr2.cand.403 - hypothetical protein; uncharacterized protein 533037 3862291 TA14805 Theileria annulata uncharacterized protein XP_951986.1 530047 R 5874 CDS TA14800 3862290 complement(join(533239..533409,533473..533612,533645..533654)) 2 1 NC_011099.1 chr2.cand.402 -small nuclear ribonucleoprotein; small nuclear ribonucleoprotein, putative 533654 3862290 TA14800 Theileria annulata small nuclear ribonucleoprotein, putative XP_951987.1 533239 R 5874 CDS TA14795 3862289 join(534136..534532,534570..534796,534830..534925,534958..535152,535188..535251,535291..535462,535494..535557,535595..535747) 2 1 NC_011099.1 chr2.C.cand.119 - ATP-dependent RNA helicase; ATP-dependent RNA helicase, putative 535747 3862289 TA14795 Theileria annulata ATP-dependent RNA helicase, putative XP_951988.1 534136 D 5874 CDS TA14790 3862288 complement(535845..537260) 2 1 NC_011099.1 chr2.cand.401 - camp-dependent protein kinase, beta-catalytic subunit; camp-dependent protein kinase, beta-catalytic subunit, putative 537260 3862288 TA14790 Theileria annulata camp-dependent protein kinase, beta-catalytic subunit, putative XP_951989.1 535845 R 5874 CDS TA14780 3862286 join(538635..538651,538684..538746,538779..538855,538901..538932,538969..539019) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA14780 by TMHMM2.0 at aa 49-71; Signal anchor predicted for TA14780 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.986) with cleavage site probability 0.000 between residues 20 and 21; uncharacterized protein 539019 3862286 TA14780 Theileria annulata uncharacterized protein XP_951990.1 538635 D 5874 CDS TA14775 3862285 join(539373..539503,539535..539716,539757..539867,539905..539969,540037..540376,540406..540494,540533..540610,540652..541167) 2 1 NC_011099.1 chr2.C.cand.122 - glycerol kinase, PF00370 FGGY family of carbohydrate kinases, N-terminal domain, PF02782 FGGY family of carbohydrate kinases, C-terminal domain; glycerol kinase, putative 541167 3862285 TA14775 Theileria annulata glycerol kinase, putative XP_951991.1 539373 D 5874 CDS TA14770 3862284 complement(join(541241..542770,542837..542962,543025..543372,543426..543796,543836..544163)) 2 1 NC_011099.1 chr2.cand.400 - hypothetical protein, conserved, mal13p1.260; uncharacterized protein 544163 3862284 TA14770 Theileria annulata uncharacterized protein XP_951992.1 541241 R 5874 CDS TA14765 3862283 join(545584..546030,546091..546201) 2 1 NC_011099.1 chr2.C.cand.123 - signal peptide; hypothetical protein, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14765 by SignalP 2.0 HMM (Signal peptide probability 0.943, signal anchor probability 0.014) with cleavage site probability 0.920 between residues 23 and 24; uncharacterized protein 546201 3862283 TA14765 Theileria annulata uncharacterized protein XP_951993.1 545584 D 5874 CDS TA14760 3862352 join(546334..546412,546470..546596,546627..546819) 2 1 NC_011099.1 all_bases.cand.1344 - hypothetical protein, conserved, mal6p1.224; uncharacterized protein 546819 3862352 TA14760 Theileria annulata uncharacterized protein XP_951994.1 546334 D 5874 CDS TA14755 3862351 complement(546909..548762) 2 1 NC_011099.1 chr2.cand.399 - hypothetical protein; uncharacterized protein 548762 3862351 TA14755 Theileria annulata uncharacterized protein XP_951995.1 546909 R 5874 CDS TA14750 3862350 complement(join(548893..549147,549429..549737)) 2 1 NC_011099.1 chr2.cand.398 - 60S ribosomal protein L17; 60S ribosomal protein L17, putative 549737 3862350 TA14750 Theileria annulata 60S ribosomal protein L17, putative XP_951996.1 548893 R 5874 CDS TA14745 3862349 550668..551840 2 1 NC_011099.1 hypothetical protein, conserved; chr2.C.cand.124 - hypothetical protein, low similarity with mal13p1.259, membrane; 5 probable transmembrane helices predicted for TA14745 by TMHMM2.0 at aa 46-68, 81-103, 123-145, 312-334 and 360-379; GPI-Anchor Signal predicted for TA14745 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 551840 3862349 TA14745 Theileria annulata uncharacterized protein XP_951997.1 550668 D 5874 CDS TA14740 3862348 complement(551973..552830) 2 1 NC_011099.1 chr2.cand.397 - hypothetical protein; uncharacterized protein 552830 3862348 TA14740 Theileria annulata uncharacterized protein XP_951998.1 551973 R 5874 CDS TA14735 3862347 complement(join(553191..553345,553454..553564,553704..553808,554009..554087)) 2 1 NC_011099.1 all_bases.C.cand.479 - calmodulin; calmodulin, putative 554087 3862347 TA14735 Theileria annulata calmodulin, putative XP_951999.1 553191 R 5874 CDS TA14720 3862344 join(555135..555232,555372..555519,555589..557118) 2 1 NC_011099.1 chr2.C.cand.125 - PF02121 Phosphatidylinositol transfer protein, PF00169 PH domain; Phosphatidylinositol transfer protein, putative; uncharacterized protein 557118 3862344 TA14720 Theileria annulata uncharacterized protein XP_952000.1 555135 D 5874 CDS TA14715 3862343 complement(join(557267..557326,557356..557775)) 2 1 NC_011099.1 all_bases.C.cand.478 - hypothetical protein; uncharacterized protein 557775 3862343 TA14715 Theileria annulata uncharacterized protein XP_952001.1 557267 R 5874 CDS TA14710 3862342 complement(join(557829..558067,558097..558517,558583..559082,559131..559298,559393..559579)) 2 1 NC_011099.1 all_bases.C.cand.477 - hypothetical protein; uncharacterized protein 559579 3862342 TA14710 Theileria annulata uncharacterized protein XP_952002.1 557829 R 5874 CDS TA14705 3862341 join(560109..560284,560318..560530,560560..560748,560779..560820,560850..560906,560936..561023) 2 1 NC_011099.1 all_bases.cand.1347 - signal peptide, low sim. to ribosome recycling factor; hypothetical protein, signal peptide; 2 probable transmembrane helices predicted for TA14705 by TMHMM2.0 at aa 4-23 and 30-52; uncharacterized protein 561023 3862341 TA14705 Theileria annulata uncharacterized protein XP_952003.1 560109 D 5874 CDS TA14700 3862340 complement(join(561134..561306,561402..561559,561701..561851,561930..562014)) 2 1 NC_011099.1 uncharacterized protein 562014 3862340 TA14700 Theileria annulata uncharacterized protein XP_952004.1 561134 R 5874 CDS TA14695 3862339 join(562213..562333,562368..562569,562599..562890,562936..563009,563039..563236,563265..563395,563451..563551,563581..563660,563693..563820,563885..563976,564016..564249) 2 1 NC_011099.1 all_bases.cand.1348 - score = 61.69 PF01926 Gtpase of unknown function; nucleolar GTPase, putative 564249 3862339 TA14695 Theileria annulata nucleolar GTPase, putative XP_952005.1 562213 D 5874 CDS TA14690 3862338 join(564287..564347,564380..564558,564588..564764) 2 1 NC_011099.1 all_bases.cand.1349 - acyl carrier protein, signal sequence, apicoplast, PF00550 Phosphopantetheine attachment site; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14690 by SignalP 2.0 HMM (Signal peptide probability 0.974, signal anchor probability 0.006) with cleavage site probability 0.912 between residues 24 and 25; acyl carrier protein, apicoplast, putative 564764 3862338 TA14690 Theileria annulata acyl carrier protein, apicoplast, putative XP_952006.1 564287 D 5874 CDS TA14685 3862337 564796..566151 2 1 NC_011099.1 chr2.C.cand.131 - PF00022 actin; actin-related protein, putative 566151 3862337 TA14685 Theileria annulata actin-related protein, putative XP_952007.1 564796 D 5874 CDS TA14680 3862336 complement(566479..576060) 2 1 NC_011099.1 chr2.cand.392 - signal peptide, hypothetical protein; 1 probable transmembrane helix predicted for TA14680 by TMHMM2.0 at aa 5-27; uncharacterized protein 576060 3862336 TA14680 Theileria annulata uncharacterized protein XP_952008.1 566479 R 5874 CDS TA14675 3862335 complement(576682..577734) 2 1 NC_011099.1 chr2.cand.391 - signal peptide; secreted protein, putative; Signal peptide predicted for TA14675 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.000) with cleavage site probability 0.876 between residues 18 and 19; uncharacterized protein 577734 3862335 TA14675 Theileria annulata uncharacterized protein XP_952009.1 576682 R 5874 CDS TA14665 3862392 578923..590685 2 1 NC_011099.1 chr2.C.cand.133 - signal peptide, hypothetical protein; 1 probable transmembrane helix predicted for TA14665 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA14665 by SignalP 2.0 HMM (Signal peptide probability 0.833, signal anchor probability 0.167) with cleavage site probability 0.353 between residues 22 and 23; uncharacterized protein 590685 3862392 TA14665 Theileria annulata uncharacterized protein XP_952010.1 578923 D 5874 CDS TA14660 3862391 complement(join(590865..591122,591177..591431)) 2 1 NC_011099.1 chr2.cand.390 - hypothetical protein; uncharacterized protein 591431 3862391 TA14660 Theileria annulata uncharacterized protein XP_952011.1 590865 R 5874 CDS TA14655 3862390 join(591735..591882,591941..592250,592321..592492,592557..592710,592740..592954,593011..593132,593201..593260,593296..593392,593459..593578,593619..593756) 2 1 NC_011099.1 all_bases.cand.1352 - signal peptide, transmembrane domains; membrane protein, putative; 12 probable transmembrane helices predicted for TA14655 by TMHMM2.0 at aa 33-51, 82-101, 108-127, 131-148, 155-177, 202-224, 236-258, 278-300, 320-351, 384-403, 447-469 and 484-506; uncharacterized protein 593756 3862390 TA14655 Theileria annulata uncharacterized protein XP_952012.1 591735 D 5874 CDS TA14650 3862389 join(594494..594949,595066..596934) 2 1 NC_011099.1 chr2.C.cand.135 - protein transport protein sec23; protein transport protein (SEC23 homologue), putative 596934 3862389 TA14650 Theileria annulata protein transport protein (SEC23 homologue), putative XP_952013.1 594494 D 5874 CDS TA14645 3862388 597170..599065 2 1 NC_011099.1 chr2.C.cand.136 - transmembrane domains; 10 probable transmembrane helices predicted for TA14645 by TMHMM2.0 at aa 22-44, 153-175, 185-207, 214-236, 256-278, 408-430, 445-467, 522-544, 564-586 and 593-612; Tpr-related protein family member, putative 599065 3862388 TA14645 Theileria annulata Tpr-related protein family member, putative XP_952014.1 597170 D 5874 CDS TA14640 3862387 join(599403..599469,599651..599832) 2 1 NC_011099.1 chr2.C.cand.137 - small nuclear ribonucleoprotein; small nuclear ribonucleoprotein, putative 599832 3862387 TA14640 Theileria annulata small nuclear ribonucleoprotein, putative XP_952015.1 599403 D 5874 CDS TA14635 3862386 join(600541..600661,600704..600870,600993..601252,601325..601545,601640..601710) 2 1 NC_011099.1 3 probable transmembrane helices predicted for TA14635 by TMHMM2.0 at aa 62-84, 145-167 and 212-234; uncharacterized protein 601710 3862386 TA14635 Theileria annulata uncharacterized protein XP_952016.1 600541 D 5874 CDS TA14630 3862385 complement(join(601792..601861,601969..602097,602197..602386,602466..602703)) 2 1 NC_011099.1 chr2.cand.389 - hypothetical protein; uncharacterized protein 602703 3862385 TA14630 Theileria annulata uncharacterized protein XP_952017.1 601792 R 5874 CDS TA14625 3862384 602978..604696 2 1 NC_011099.1 chr2.C.cand.139 - protein kinase; calcium-dependent protein kinase, putative 604696 3862384 TA14625 Theileria annulata calcium-dependent protein kinase, putative XP_952018.1 602978 D 5874 CDS TA14620 3862383 join(605092..606063,606096..606437,606592..606945) 2 1 NC_011099.1 chr2.C.cand.140 - hypothetical protein; uncharacterized protein 606945 3862383 TA14620 Theileria annulata uncharacterized protein XP_952019.1 605092 D 5874 CDS TA14615 3862382 complement(join(606985..607264,607320..607497,607604..607687,607747..608023)) 2 1 NC_011099.1 chr2.cand.388 - hypothetical protein; uncharacterized protein 608023 3862382 TA14615 Theileria annulata uncharacterized protein XP_952020.1 606985 R 5874 CDS TA14610 3862381 join(608318..608865,608937..609114,609181..609261,609331..609429,609496..609577,609643..609744,609817..610496) 2 1 NC_011099.1 chr2.C.cand.141 - GTPase activator, PF00566 TBC domain; GTPase activator, putative 610496 3862381 TA14610 Theileria annulata GTPase activator, putative XP_952021.1 608318 D 5874 CDS TA14605 3862380 complement(611011..612465) 2 1 NC_011099.1 chr2.cand.387 - hypothetical protein; 1 probable transmembrane helix predicted for TA14605 by TMHMM2.0 at aa 460-482; Tpr-related protein family member, putative 612465 3862380 TA14605 Theileria annulata Tpr-related protein family member, putative XP_952022.1 611011 R 5874 CDS TA14600 3862379 complement(join(612683..612873,612956..613183,613348..613495)) 2 1 NC_011099.1 UMP-CMP kinase, putative 613495 3862379 TA14600 Theileria annulata UMP-CMP kinase, putative XP_952023.1 612683 R 5874 CDS TA14595 3862378 614263..614937 2 1 NC_011099.1 chr2.C.cand.142 - hypothetical protein; uncharacterized protein 614937 3862378 TA14595 Theileria annulata uncharacterized protein XP_952024.1 614263 D 5874 CDS TA14590 3862377 join(615139..615271,615369..615565,615728..615958,616033..616217,616340..616673,616730..616912,616984..617127,617195..617368,617494..617770,617806..618122,618208..618930,618966..619091) 2 1 NC_011099.1 chr2.C.cand.143 - ubiquitin-activating enzyme e1; ubiquitin-activating enzyme E1, putative 619091 3862377 TA14590 Theileria annulata ubiquitin-activating enzyme E1, putative XP_952025.1 615139 D 5874 CDS TA14585 3862376 join(619146..619430,619520..619612,619762..619839,619904..620084,620175..620274,620353..620805,620880..620955,620984..621100,621135..621230,621373..621446,621477..621557,621619..621772) 2 1 NC_011099.1 Tax1-binding protein TRX-like protein, putative 621772 3862376 TA14585 Theileria annulata Tax1-binding protein TRX-like protein, putative XP_952026.1 619146 D 5874 CDS TA14580 3862375 complement(621945..622916) 2 1 NC_011099.1 chr2.cand.384 - transmembrane protein; membrane protein. putative; 2 probable transmembrane helices predicted for TA14580 by TMHMM2.0 at aa 218-240 and 261-283; uncharacterized protein 622916 3862375 TA14580 Theileria annulata uncharacterized protein XP_952027.1 621945 R 5874 CDS TA14575 3862374 join(623175..623401,623465..623565,623594..623804,623875..624014,624079..624267,624298..624563) 2 1 NC_011099.1 chr2.C.cand.147 - PF01026 TatD related DNase; TatD-like deoxyribonuclease, putative 624563 3862374 TA14575 Theileria annulata TatD-like deoxyribonuclease, putative XP_952028.1 623175 D 5874 CDS TA14570 3862373 join(624934..625070,625199..625576,625607..625815,625960..626879) 2 1 NC_011099.1 all_bases.cand.1363 - kinesin-like protein, kinesin motor domain; kinesin-like protein, putative 626879 3862373 TA14570 Theileria annulata kinesin-like protein, putative XP_952029.1 624934 D 5874 CDS TA14560 3862506 complement(join(626930..627215,627246..627461,627519..627957,628009..628474,628505..628603,628635..628847)) 2 1 NC_011099.1 all_bases.C.cand.466 - hypothetical protein; uncharacterized protein 628847 3862506 TA14560 Theileria annulata uncharacterized protein XP_952030.1 626930 R 5874 CDS TA14555 3862505 join(629187..629341,629417..629722,629789..630145,630212..630384,630427..630671,630707..630847) 2 1 NC_011099.1 chr2.C.cand.149 - AAA-atpase; CDC6-like ATPase, putative 630847 3862505 TA14555 Theileria annulata CDC6-like ATPase, putative XP_952031.1 629187 D 5874 CDS TA14550 3862504 complement(join(631154..631330,631364..631445,631517..631617,631649..631714,631754..631838,631903..632078)) 2 1 NC_011099.1 uncharacterized protein 632078 3862504 TA14550 Theileria annulata uncharacterized protein XP_952032.1 631154 R 5874 CDS TA14545 3862503 join(632176..632302,632338..632592,632685..632933,633001..633521) 2 1 NC_011099.1 chr2.C.cand.151 - signal peptide; Signal peptide predicted for TA14545 by SignalP 2.0 HMM (Signal peptide probability 0.950, signal anchor probability 0.005) with cleavage site probability 0.636 between residues 18 and 19; 4-diphosphocytidyl-2c-methyl-D-erythritol kinase, putative 633521 3862503 TA14545 Theileria annulata 4-diphosphocytidyl-2c-methyl-D-erythritol kinase, putative XP_952033.1 632176 D 5874 CDS TA14540 3862502 complement(633634..635874) 2 1 NC_011099.1 membrane protein, putative; chr2.cand.380 - transmembrane domains; 10 probable transmembrane helices predicted for TA14540 by TMHMM2.0 at aa 32-54, 123-145, 155-177, 184-206, 221-243, 521-543, 553-575, 630-652, 672-694 and 701-723; Tpr-related protein family member, putative 635874 3862502 TA14540 Theileria annulata Tpr-related protein family member, putative XP_952034.1 633634 R 5874 CDS TA14535 3862501 complement(join(636057..636748,636818..636882,636944..637171,637229..637362,637456..637514,637588..637699)) 2 1 NC_011099.1 chr2.cand.379 - signal peptide, apicoplast target sequence, PF00830 Ribosomal L28 family; 50s ribosomal subunit protein L28, putative 637699 3862501 TA14535 Theileria annulata 50s ribosomal subunit protein L28, putative XP_952035.1 636057 R 5874 CDS TA14530 3862500 complement(638385..638615) 2 1 NC_011099.1 uncharacterized protein 638615 3862500 TA14530 Theileria annulata uncharacterized protein XP_952036.1 638385 R 5874 CDS TA14525 3862499 complement(join(638851..639026,639097..639239,639288..639430,639480..639553,639613..639678,639728..639818,639853..639882)) 2 1 NC_011099.1 chr2.cand.378 - PF01873 Domain found in IF2B/IF5; eukaryotic translation initiation factor 2, beta, putative 639882 3862499 TA14525 Theileria annulata eukaryotic translation initiation factor 2, beta, putative XP_952037.1 638851 R 5874 CDS TA14520 3862498 complement(join(640053..640487,640525..640601,640665..640734,640765..640883,640952..641071,641136..641275,641434..641555)) 2 1 NC_011099.1 chr2.cand.378 - hypothetical protein, conserved, pfl2150C; uncharacterized protein 641555 3862498 TA14520 Theileria annulata uncharacterized protein XP_952038.1 640053 R 5874 CDS TA14515 3862497 complement(641841..643712) 2 1 NC_011099.1 chr2.cand.376 - hypothetical protein, conserved, pf14_0413; uncharacterized protein 643712 3862497 TA14515 Theileria annulata uncharacterized protein XP_952039.1 641841 R 5874 CDS TA14500 3862494 join(644074..644583,644636..645525,645557..646552,646609..646893,646937..647117) 2 1 NC_011099.1 chr2.C.cand.152 - hypothetical protein; uncharacterized protein 647117 3862494 TA14500 Theileria annulata uncharacterized protein XP_952040.1 644074 D 5874 CDS TA14495 3862493 complement(647253..648578) 2 1 NC_011099.1 chr2.cand.375 - membrane protein; membrane protein; 10 probable transmembrane helices predicted for TA14495 by TMHMM2.0 at aa 5-23, 120-142, 149-171, 186-208, 253-275, 290-312, 315-337, 342-364, 376-398 and 408-427; uncharacterized protein 648578 3862493 TA14495 Theileria annulata uncharacterized protein XP_952041.1 647253 R 5874 CDS TA14490 3862492 complement(join(649000..649688,649775..650705)) 2 1 NC_011099.1 chr2.cand.374 - membrane protein; membrane protein; 10 probable transmembrane helices predicted for TA14490 by TMHMM2.0 at aa 28-50, 102-124, 174-193, 208-230, 358-377, 392-414, 416-438, 443-465, 477-499 and 509-531; Signal anchor predicted for TA14490 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.980) with cleavage site probability 0.001 between residues 47 and 48; uncharacterized protein 650705 3862492 TA14490 Theileria annulata uncharacterized protein XP_952042.1 649000 R 5874 CDS TA14485 3862491 complement(650957..652522) 2 1 NC_011099.1 chr2.cand.373 - transmembrane protein; membrane protein, putative; 11 probable transmembrane helices predicted for TA14485 by TMHMM2.0 at aa 5-23, 90-112, 119-141, 151-170, 183-205, 332-354, 367-389, 393-415, 420-442, 452-474 and 487-506; uncharacterized protein 652522 3862491 TA14485 Theileria annulata uncharacterized protein XP_952043.1 650957 R 5874 CDS TA14480 3862490 complement(join(652954..653076,653107..653175,653335..654122,654187..654271,654301..654393,654505..654600,654648..654802,654904..655000)) 2 1 NC_011099.1 WD40 repeat protein; uncharacterized protein 655000 3862490 TA14480 Theileria annulata uncharacterized protein XP_952044.1 652954 R 5874 CDS TA14475 3862489 join(655182..655410,655467..655877,655934..656204,656236..656680) 2 1 NC_011099.1 chr2.C.cand.155 - WD40 protein; uncharacterized protein 656680 3862489 TA14475 Theileria annulata uncharacterized protein XP_952045.1 655182 D 5874 CDS TA14470 3862184 complement(join(656767..657402,657448..657703,657779..657867,657923..658016,658077..658167,658214..658444,658509..658551)) 2 1 NC_011099.1 chr2.cand.371 - score = 36.55 vacuolar sorting domain; vacuolar-protein sorting-associated protein, putative 658551 3862184 TA14470 Theileria annulata vacuolar-protein sorting-associated protein, putative XP_952046.1 656767 R 5874 CDS TA14465 3862183 join(658855..659044,659127..659234,659278..659462,659495..659636,659718..659809,659875..659985) 2 1 NC_011099.1 chr2.C.cand.156 - signal peptide, PF01553 Acyltransferase; 1 probable transmembrane helix predicted for TA14465 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA14465 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.998) with cleavage site probability 0.001 between residues 29 and 30; 1-acylglycerol-3-phosphate O-acyltransferase, putative 659985 3862183 TA14465 Theileria annulata 1-acylglycerol-3-phosphate O-acyltransferase, putative XP_952047.1 658855 D 5874 CDS TA14455 3862182 complement(join(660978..661091,661122..661256,661301..661375,661423..661548,661608..661793,661835..662293,662338..662744,662803..663035,663102..663307,663338..663487,663541..663701,663737..663827,663890..663973)) 2 1 NC_011099.1 chr2.cand.370 - signal peptide, apicoplast targetting sequence, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14455 by SignalP 2.0 HMM (Signal peptide probability 0.944, signal anchor probability 0.000) with cleavage site probability 0.702 between residues 16 and 17; 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase, putative 663973 3862182 TA14455 Theileria annulata 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase, putative XP_952048.1 660978 R 5874 CDS TA14450 3862181 complement(join(664036..664262,664333..664710,664774..664864,664923..666248)) 2 1 NC_011099.1 chr2.cand.369 - Citrate synthase, mitochondrial precursor; citrate synthase, mitochondrial precursor, putative 666248 3862181 TA14450 Theileria annulata citrate synthase, mitochondrial precursor, putative XP_952049.1 664036 R 5874 CDS TA14445 3862180 complement(join(666626..666843,666927..667371)) 2 1 NC_011099.1 conserved hypothetical protein, DUF279; uncharacterized protein 667371 3862180 TA14445 Theileria annulata uncharacterized protein XP_952050.1 666626 R 5874 CDS TA14440 3862179 complement(join(667393..667500,667564..667689,667743..667832,667899..668027,668075..668191)) 2 1 NC_011099.1 chr2.cand.368 - PF02441 Flavoprotein; uncharacterized protein 668191 3862179 TA14440 Theileria annulata uncharacterized protein XP_952051.1 667393 R 5874 CDS TA14435 3862178 join(668542..669964,670023..671974) 2 1 NC_011099.1 chr2.C.cand.157 - serine/threonine protein kinase; serine/threonine protein kinase, putative 671974 3862178 TA14435 Theileria annulata serine/threonine protein kinase, putative XP_952052.1 668542 D 5874 CDS TA14430 3862177 join(672179..672280,672311..672536,672608..672762,672797..672855,672885..673344) 2 1 NC_011099.1 all_bases.cand.1372 - mitotic checkpoint protein, WD40 protein; mitotic checkpoint protein, BUB3 homologue, putative 673344 3862177 TA14430 Theileria annulata mitotic checkpoint protein, BUB3 homologue, putative XP_952053.1 672179 D 5874 CDS TA14425 3862176 complement(join(673411..674028,674100..674243,674276..674479,674536..674891,674939..675416,675469..675910,675942..676093,676125..676390,676449..676638)) 2 1 NC_011099.1 all_bases.C.cand.452 - beta transducin, WD40 protein; transducin-like G-protein beta, putative 676638 3862176 TA14425 Theileria annulata transducin-like G-protein beta, putative XP_952054.1 673411 R 5874 CDS TA14420 3862175 join(676821..676882,676925..677086,677117..677228,677263..677375,677407..677484,677526..677624,677676..677799,677833..677910,677944..678153) 2 1 NC_011099.1 chr2.C.cand.160 - cleavage stimulation factor subunit 1, WD40 domains; cleavage stimulation factor subunit 1, putative 678153 3862175 TA14420 Theileria annulata cleavage stimulation factor subunit 1, putative XP_952055.1 676821 D 5874 CDS TA14415 3862174 complement(join(678797..678920,678983..680007)) 2 1 NC_011099.1 chr2.cand.365 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative 680007 3862174 TA14415 Theileria annulata choline/ethanolamine kinase, putative XP_952056.1 678797 R 5874 CDS TA14410 3862173 complement(join(680209..680332,680398..681422)) 2 1 NC_011099.1 chr2.cand.364 - PF01633 Choline/ethanolamine kinase; choline/ethanolamine kinase, putative 681422 3862173 TA14410 Theileria annulata choline/ethanolamine kinase, putative XP_952057.1 680209 R 5874 CDS TA14405 3862172 complement(join(681624..681747,681812..682845)) 2 1 NC_011099.1 chr2.cand.363 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative 682845 3862172 TA14405 Theileria annulata choline/ethanolamine kinase, putative XP_952058.1 681624 R 5874 CDS TA14390 3862169 complement(join(683403..683511,683576..684603)) 2 1 NC_011099.1 chr2.cand.362 -choline/ethanolamine kinase; choline/ethanolamine kinase, putative 684603 3862169 TA14390 Theileria annulata choline/ethanolamine kinase, putative XP_952059.1 683403 R 5874 CDS TA14385 3862168 complement(join(684805..684928,684991..686018)) 2 1 NC_011099.1 chr2.cand.361 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative 686018 3862168 TA14385 Theileria annulata choline/ethanolamine kinase, putative XP_952060.1 684805 R 5874 CDS TA14380 3862167 complement(join(686223..686343,686408..687456)) 2 1 NC_011099.1 chr2.cand.360 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative 687456 3862167 TA14380 Theileria annulata choline/ethanolamine kinase, putative XP_952061.1 686223 R 5874 CDS TA14375 3862166 complement(join(687923..688031,688101..689122)) 2 1 NC_011099.1 chr2.cand.359 - choline/ethanolamine kinase; choline/ethanolamine kinase, putative 689122 3862166 TA14375 Theileria annulata choline/ethanolamine kinase, putative XP_952062.1 687923 R 5874 CDS TA14370 3862165 complement(join(689455..690029,690124..690334)) 2 1 NC_011099.1 chr2.cand.358 - transmembrane domains; membrane protein, putative; 2 probable transmembrane helices predicted for TA14370 by TMHMM2.0 at aa 55-74 and 155-177; uncharacterized protein 690334 3862165 TA14370 Theileria annulata uncharacterized protein XP_952063.1 689455 R 5874 CDS TA14365 3861649 join(690424..690498,690701..690739,690795..690974,691019..691128,691181..691269,691308..691654) 2 1 NC_011099.1 uncharacterized protein 691654 3861649 TA14365 Theileria annulata uncharacterized protein XP_952064.1 690424 D 5874 CDS TA14360 3861648 join(691850..692065,692165..692258,692289..693358) 2 1 NC_011099.1 chr2.C.cand.162 - PF00561 alpha/beta hydrolase fold; hydrolase, putative 693358 3861648 TA14360 Theileria annulata hydrolase, putative XP_952065.1 691850 D 5874 CDS TA14355 3861647 693405..694091 2 1 NC_011099.1 uncharacterized protein 694091 3861647 TA14355 Theileria annulata uncharacterized protein XP_952066.1 693405 D 5874 CDS TA14350 3861646 complement(join(694144..694297,694326..694439,694471..694613,694646..694716,694771..694951,694983..696632,696664..696731,696763..696841,696881..696939,696980..697085,697115..697263,697314..697447,697490..697621,697657..697730)) 2 1 NC_011099.1 all_bases.C.cand.447 - hypothetical protein; uncharacterized protein 697730 3861646 TA14350 Theileria annulata uncharacterized protein XP_952067.1 694144 R 5874 CDS TA14345 3861645 complement(join(698100..698335,698369..698619,698676..698842)) 2 1 NC_011099.1 DnaJ domain protein; chr2.cand.355 - PF00226 DnaJ domain; uncharacterized protein 698842 3861645 TA14345 Theileria annulata uncharacterized protein XP_952068.1 698100 R 5874 CDS TA14340 3861644 complement(join(698985..699222,699254..699318,699367..700137)) 2 1 NC_011099.1 chr2.cand.354 - hypothetical protein; 1 probable transmembrane helix predicted for TA14340 by TMHMM2.0 at aa 272-294; uncharacterized protein 700137 3861644 TA14340 Theileria annulata uncharacterized protein XP_952069.1 698985 R 5874 CDS TA14335 3861643 complement(join(700391..700641,700671..700748,700810..701085,701117..701222,701253..701285)) 2 1 NC_011099.1 all_bases.C.cand.445 - hypothetical protein; uncharacterized protein 701285 3861643 TA14335 Theileria annulata uncharacterized protein XP_952070.1 700391 R 5874 CDS TA14330 3861642 complement(join(701439..701540,701611..701862,701912..702655)) 2 1 NC_011099.1 chr2.cand.352 - hypothetical protein, conserved, mal13p1.237; uncharacterized protein 702655 3861642 TA14330 Theileria annulata uncharacterized protein XP_952071.1 701439 R 5874 CDS TA14325 3861641 complement(join(703080..703868,703899..704138)) 2 1 NC_011099.1 chr2.cand.351 - hypothetical protein; 1 probable transmembrane helix predicted for TA14325 by TMHMM2.0 at aa 47-66; Signal anchor predicted for TA14325 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.983) with cleavage site probability 0.000 between residues -1 and 0; uncharacterized protein 704138 3861641 TA14325 Theileria annulata uncharacterized protein XP_952072.1 703080 R 5874 CDS TA14320 3861640 join(704682..704763,704798..704979,705021..705179,705212..705943,706009..706065,706099..706272) 2 1 NC_011099.1 chr2.C.cand.165 - PF00928 Adaptor complexes medium subunit family; clathrin-coat assembly protein, putative 706272 3861640 TA14320 Theileria annulata clathrin-coat assembly protein, putative XP_952073.1 704682 D 5874 CDS TA14315 3861639 complement(join(706339..706646,706676..706727)) 2 1 NC_011099.1 uncharacterized protein 706727 3861639 TA14315 Theileria annulata uncharacterized protein XP_952074.1 706339 R 5874 CDS TA14310 3861638 complement(706874..707380) 2 1 NC_011099.1 hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14310 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.860 between residues 22 and 23; GPI-Anchor Signal predicted for TA14310 by DGPI v2.04 with cleavage site probability 0.15480001 near 137; uncharacterized protein 707380 3861638 TA14310 Theileria annulata uncharacterized protein XP_952075.1 706874 R 5874 CDS TA14305 3861637 complement(join(707504..707703,707745..707937,707969..708100)) 2 1 NC_011099.1 chr2.cand.350 - ubiquitin-conjugating enzyme e2; ubiquitin-conjugating enzyme E2, putative 708100 3861637 TA14305 Theileria annulata ubiquitin-conjugating enzyme E2, putative XP_952076.1 707504 R 5874 CDS TA14300 3861636 complement(join(708116..708250,708310..708380,708447..708558,708614..708818,708868..708994,709028..709142,709181..709329,709399..709447,709525..709602,709656..709784)) 2 1 NC_011099.1 chr2.cand.350 - gdp-mannose pyrophosphorylase; GDP-mannose pyrophosphorylase, putative 709784 3861636 TA14300 Theileria annulata GDP-mannose pyrophosphorylase, putative XP_952077.1 708116 R 5874 CDS TA14295 3861635 join(709937..709953,709989..710019,710050..710152,710198..710348,710379..710455,710517..710836,710902..711312,711369..711887) 2 1 NC_011099.1 chr2.C.cand.166 - DnaJ domain; DnaJ domain protein, putative; 1 probable transmembrane helix predicted for TA14295 by TMHMM2.0 at aa 33-55; Signal anchor predicted for TA14295 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.995) with cleavage site probability 0.003 between residues 56 and 57; uncharacterized protein 711887 3861635 TA14295 Theileria annulata uncharacterized protein XP_952078.1 709937 D 5874 CDS TA14285 3861633 complement(712273..714393) 2 1 NC_011099.1 chr2.cand.349 - signal peptide, hypothetical protein; secreted protein, putative; SfiI-subtelomeric fragment related protein family member, putative 714393 3861633 TA14285 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952079.1 712273 R 5874 CDS TA14280 3861632 complement(join(715479..715562,715594..715694,715724..715955,716046..716354)) 2 1 NC_011099.1 chr2.cand.348 - splicing factor 3a subunit 2, putative; splicing factor 3a subunit 2, putative 716354 3861632 TA14280 Theileria annulata splicing factor 3a subunit 2, putative XP_952080.1 715479 R 5874 CDS TA14275 3861631 complement(join(716429..716747,716797..717119,717171..717290,717322..717566,717604..718024,718104..718253,718313..718431,718463..718921,718978..719158,719241..719681)) 2 1 NC_011099.1 chr2.cand.346 - sodium/hydrogen exchanger; 11 probable transmembrane helices predicted for TA14275 by TMHMM2.0 at aa 2-24, 39-61, 68-86, 137-159, 171-193, 245-267, 293-315, 330-352, 365-382, 402-421 and 434-456; Signal peptide predicted for TA14275 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.002) with cleavage site probability 0.689 between residues 26 and 27; sodium/hydrogen exchanger, putative 719681 3861631 TA14275 Theileria annulata sodium/hydrogen exchanger, putative XP_952081.1 716429 R 5874 CDS TA14270 3862106 join(720025..720165,720213..720737) 2 1 NC_011099.1 chr2.C.cand.167 - signal peptide, 50s ribosomal protein l22, no predicted apicoplast target sequence; Signal peptide predicted for TA14270 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.872 between residues 15 and 16; 50S ribosomal protein L22, putative 720737 3862106 TA14270 Theileria annulata 50S ribosomal protein L22, putative XP_952082.1 720025 D 5874 CDS TA14265 3862105 complement(join(720916..721031,721063..721139,721169..721386,721492..721579,721692..721735,721775..721897)) 2 1 NC_011099.1 chr2.cand.345 - hypothetical protein; GPI-Anchor Signal predicted for TA14265 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 721897 3862105 TA14265 Theileria annulata uncharacterized protein XP_952083.1 720916 R 5874 CDS TA14260 3862104 complement(join(722242..722523,722555..722662,722732..723012,723042..723138,723171..723273,723316..723416,723470..723565)) 2 1 NC_011099.1 all_bases.C.cand.439 - mis3 homologue, ribosomal RNA assembly protein; ribosomal RNA assembly protein, putative 723565 3862104 TA14260 Theileria annulata ribosomal RNA assembly protein, putative XP_952084.1 722242 R 5874 CDS TA14255 3862103 complement(join(723598..723669,723723..724018,724090..724215,724369..724491,724525..724825)) 2 1 NC_011099.1 chr2.cand.343 - protein kinase; ser/thr protein kinase, putative 724825 3862103 TA14255 Theileria annulata ser/thr protein kinase, putative XP_952085.1 723598 R 5874 CDS TA14250 3862102 join(725171..726457,726524..727324) 2 1 NC_011099.1 small overlap at the 3' end with gene TA14245; 1 probable transmembrane helix predicted for TA14250 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA14250 by SignalP 2.0 HMM (Signal peptide probability 0.670, signal anchor probability 0.191) with cleavage site probability 0.440 between residues 22 and 23; uncharacterized protein 727324 3862102 TA14250 Theileria annulata uncharacterized protein XP_952086.1 725171 D 5874 CDS TA14245 3862101 complement(727311..729905) 2 1 NC_011099.1 small overlap at the 3' end with gene TA14250; uncharacterized protein 729905 3862101 TA14245 Theileria annulata uncharacterized protein XP_952087.1 727311 R 5874 CDS TA14240 3862100 join(730089..730782,730950..731182,731252..731492,731652..731753,731781..731890,731928..732014) 2 1 NC_011099.1 all_bases.cand.1381 - leu/phe-trna protein transferase; leu/phe-trna protein transferase, putative 732014 3862100 TA14240 Theileria annulata leu/phe-trna protein transferase, putative XP_952088.1 730089 D 5874 CDS TA14230 3862098 join(732165..732497,732640..732816) 2 1 NC_011099.1 chr2.C.cand.170 - hypothetical protein, conserved, pfb0590W, signal peptide; uncharacterized protein 732816 3862098 TA14230 Theileria annulata uncharacterized protein XP_952089.1 732165 D 5874 CDS TA14225 3862097 join(733285..733293,733327..733449,733534..733738,733861..734040,734196..734287,734325..734407,734572..734653,734704..734931) 2 1 NC_011099.1 DnaJ protein, putative; chr2.C.cand.171 - DnaJ protein; molecular chaperone, putative 734931 3862097 TA14225 Theileria annulata molecular chaperone, putative XP_952090.1 733285 D 5874 CDS TA14220 3862096 complement(join(735068..735349,735468..735581,735876..736020,736138..736241)) 2 1 NC_011099.1 all_bases.C.cand.436 - hypothetical protein; 2 probable transmembrane helices predicted for TA14220 by TMHMM2.0 at aa 62-84 and 149-168; uncharacterized protein 736241 3862096 TA14220 Theileria annulata uncharacterized protein XP_952091.1 735068 R 5874 CDS TA14215 3862095 join(736468..736550,736746..737005,737130..737318,737386..737439,737577..738194,738249..739439,739499..740790,740891..741036,741124..741343) 2 1 NC_011099.1 chr2.C.cand.172 - hypothetical protein, signal peptide, TSP1 Thrombospondin type 1 repeat, SMART SM0209, transmembrane; membrane protein; 1 probable transmembrane helix predicted for TA14215 by TMHMM2.0 at aa 1318-1340; Signal peptide predicted for TA14215 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.001) with cleavage site probability 0.426 between residues 16 and 17; uncharacterized protein 741343 3862095 TA14215 Theileria annulata uncharacterized protein XP_952092.1 736468 D 5874 CDS TA14210 3862094 join(741521..741850,741943..742305) 2 1 NC_011099.1 chr2.C.cand.173 - hypothetical protein, transmembrane; membrane protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; 4 probable transmembrane helices predicted for TA14210 by TMHMM2.0 at aa 82-101, 121-140, 147-169 and 193-215; Signal peptide predicted for TA14210 by SignalP 2.0 HMM (Signal peptide probability 0.861, signal anchor probability 0.000) with cleavage site probability 0.529 between residues 17 and 18; uncharacterized protein 742305 3862094 TA14210 Theileria annulata uncharacterized protein XP_952093.1 741521 D 5874 CDS TA14205 3862093 join(742730..742765,742801..745062) 2 1 NC_011099.1 all_bases.cand.1385 - signal sequence; secreted protein, putative; Signal peptide predicted for TA14205 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.939 between residues 19 and 20; uncharacterized protein 745062 3862093 TA14205 Theileria annulata uncharacterized protein XP_952094.1 742730 D 5874 CDS TA14200 3862092 complement(join(745143..745896,746087..747188,747346..747537,747597..748329)) 2 1 NC_011099.1 chr2.cand.341 - signal peptide, PF00090 Thrombospondin type 1 domain; secreted protein, putative; 1 probable transmembrane helix predicted for TA14200 by TMHMM2.0 at aa 646-665; Signal peptide predicted for TA14200 by SignalP 2.0 HMM (Signal peptide probability 0.893, signal anchor probability 0.000) with cleavage site probability 0.439 between residues 15 and 16; uncharacterized protein 748329 3862092 TA14200 Theileria annulata uncharacterized protein XP_952095.1 745143 R 5874 CDS TA14195 3862091 complement(join(748575..749111,749141..749227,749339..749490,749521..749635)) 2 1 NC_011099.1 all_bases.C.cand.434 - ring finger; uncharacterized protein 749635 3862091 TA14195 Theileria annulata uncharacterized protein XP_952096.1 748575 R 5874 CDS TA14190 3862090 join(750312..750360,750429..750622) 2 1 NC_011099.1 chr2.C.cand.175 - score = 7.98; uncharacterized protein 750622 3862090 TA14190 Theileria annulata uncharacterized protein XP_952097.1 750312 D 5874 CDS TA14185 3862089 join(751127..751231,751300..751468,751568..751633,751713..752553,752697..752766) 2 1 NC_011099.1 chr2.C.cand.176 - ATP-dependent RNA helicase; ATP-dependent RNA helicase, putative 752766 3862089 TA14185 Theileria annulata ATP-dependent RNA helicase, putative XP_952098.1 751127 D 5874 CDS TA14165 3861611 753196..753411 2 1 NC_011099.1 uncharacterized protein 753411 3861611 TA14165 Theileria annulata uncharacterized protein XP_952099.1 753196 D 5874 CDS TA14160 3861610 753808..753963 2 1 NC_011099.1 uncharacterized protein 753963 3861610 TA14160 Theileria annulata uncharacterized protein XP_952100.1 753808 D 5874 CDS TA14155 3861609 join(754392..754470,754759..755138) 2 1 NC_011099.1 histone h2a variant; histone H2A variant, putative 755138 3861609 TA14155 Theileria annulata histone H2A variant, putative XP_952101.1 754392 D 5874 CDS TA14150 3861608 join(755489..755782,755971..756105) 2 1 NC_011099.1 chr2.C.cand.178 - you2-like c2c2 zinc finger protein; YOU2-like zinc finger protein, putative 756105 3861608 TA14150 Theileria annulata YOU2-like zinc finger protein, putative XP_952102.1 755489 D 5874 CDS TA14145 3861607 join(756236..756256,756269..756339,756396..756449,756481..756629,756749..756909,757079..757216) 2 1 NC_011099.1 uncharacterized protein 757216 3861607 TA14145 Theileria annulata uncharacterized protein XP_952103.1 756236 D 5874 CDS TA14140 3861606 complement(757381..758454) 2 1 NC_011099.1 transmembrane protein, signal peptide; secreted protein, putative; Tpr-related protein family member, putative 758454 3861606 TA14140 Theileria annulata Tpr-related protein family member, putative XP_952104.1 757381 R 5874 CDS TA14135 3861605 complement(758548..759276) 2 1 NC_011099.1 transmembrane protein, signal peptide; secreted protein, putative; 2 probable transmembrane helices predicted for TA14135 by TMHMM2.0 at aa 4-26 and 83-105; Signal peptide predicted for TA14135 by SignalP 2.0 HMM (Signal peptide probability 0.861, signal anchor probability 0.032) with cleavage site probability 0.535 between residues 23 and 24; Tpr-related protein family member, putative 759276 3861605 TA14135 Theileria annulata Tpr-related protein family member, putative XP_952105.1 758548 R 5874 CDS TA14130 3861604 complement(join(759322..760387,760469..760761,760812..761373,761430..761467)) 2 1 NC_011099.1 transmembrane protein, signal peptide; secreted protein, putative; 1 probable transmembrane helix predicted for TA14130 by TMHMM2.0 at aa 622-644; Tpr-related protein family member, putative 761467 3861604 TA14130 Theileria annulata Tpr-related protein family member, putative XP_952106.1 759322 R 5874 CDS TA14125 3861603 join(761846..762457,762490..763239) 2 1 NC_011099.1 uncharacterized protein 763239 3861603 TA14125 Theileria annulata uncharacterized protein XP_952107.1 761846 D 5874 CDS TA14120 3861602 complement(763261..764820) 2 1 NC_011099.1 chr2.cand.337 - hypothetical protein, similarity to T. parva fragment; Tpr-related protein family member, putative 764820 3861602 TA14120 Theileria annulata Tpr-related protein family member, putative XP_952108.1 763261 R 5874 CDS TA14115 3861601 complement(join(764908..765148,765251..765420,765521..765724,765822..765904,765999..766071)) 2 1 NC_011099.1 chr2.cand.336 - 14-3-3 protein-like; 14-3-3 protein homologue, putative 766071 3861601 TA14115 Theileria annulata 14-3-3 protein homologue, putative XP_952109.1 764908 R 5874 CDS TA14110 3861600 766731..767078 2 1 NC_011099.1 chr2.C.cand.181 - hypothetical protein, histone-like; uncharacterized protein 767078 3861600 TA14110 Theileria annulata uncharacterized protein XP_952110.1 766731 D 5874 CDS TA14105 3861599 complement(join(767535..767690,767755..767873,768014..768640,768849..768894)) 2 1 NC_011099.1 mitochondrial carrier protein; mitochondrial solute carrier-like protein, putative 768894 3861599 TA14105 Theileria annulata mitochondrial solute carrier-like protein, putative XP_952111.1 767535 R 5874 CDS TA14100 3861598 complement(join(769265..769372,769467..769614,769799..769860,769894..770439)) 2 1 NC_011099.1 chr2.cand.334 - hypothetical protein; uncharacterized protein 770439 3861598 TA14100 Theileria annulata uncharacterized protein XP_952112.1 769265 R 5874 CDS TA14095 3861597 join(770462..770531,770572..771294,771408..771553,771679..772129,772174..772646) 2 1 NC_011099.1 all_bases.cand.1391 - GTPase of unknown function; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA14095 by SignalP 2.0 HMM (Signal peptide probability 0.944, signal anchor probability 0.000) with cleavage site probability 0.365 between residues 17 and 18; uncharacterized protein 772646 3861597 TA14095 Theileria annulata uncharacterized protein XP_952113.1 770462 D 5874 CDS TA14090 3861596 complement(join(772772..773025,773194..773395)) 2 1 NC_011099.1 chr2.cand.333 - thioredoxin, signal sequence, transmembrane; 1 probable transmembrane helix predicted for TA14090 by TMHMM2.0 at aa 111-133; T. parva transmembrane protein 17 homologue, putative 773395 3861596 TA14090 Theileria annulata T. parva transmembrane protein 17 homologue, putative XP_952114.1 772772 R 5874 CDS TA14085 3861595 complement(773480..773740) 2 1 NC_011099.1 chr2.cand.333 - thioredoxin, signal sequence, transmembrane; 1 probable transmembrane helix predicted for TA14085 by TMHMM2.0 at aa 46-68; Signal peptide predicted for TA14085 by SignalP 2.0 HMM (Signal peptide probability 0.951, signal anchor probability 0.000) with cleavage site probability 0.316 between residues 16 and 17; uncharacterized protein 773740 3861595 TA14085 Theileria annulata uncharacterized protein XP_952115.1 773480 R 5874 CDS TA14080 3861594 complement(join(774033..774187,774316..774758,774892..776051)) 2 1 NC_011099.1 chr2.cand.332 - hypothetical protein; uncharacterized protein 776051 3861594 TA14080 Theileria annulata uncharacterized protein XP_952116.1 774033 R 5874 CDS TA14075 3861593 join(776813..777155,777247..777689) 2 1 NC_011099.1 proliferating cell nuclear antigen 2 (PCNA2), putative 777689 3861593 TA14075 Theileria annulata proliferating cell nuclear antigen 2 (PCNA2), putative XP_952117.1 776813 D 5874 CDS TA14060 3861734 join(777908..779380,779461..779568) 2 1 NC_011099.1 chr2.C.cand.184 - hypothetical protein; uncharacterized protein 779568 3861734 TA14060 Theileria annulata uncharacterized protein XP_952118.1 777908 D 5874 CDS TA14055 3861733 join(779700..779919,780002..780070,780147..780212,780241..780383,780413..780513,780544..780877,780909..780999,781040..781296) 2 1 NC_011099.1 chr2.C.cand.186 - PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase; cyclophilin, putative 781296 3861733 TA14055 Theileria annulata cyclophilin, putative XP_952119.1 779700 D 5874 CDS TA14050 3861732 join(781561..781663,781697..781732,781787..781878) 2 1 NC_011099.1 chr2.C.cand.187 - ubiquitin-like protein nedd8 homologue; ubiquitin-like protein (NEDD8 homologue), putative 781878 3861732 TA14050 Theileria annulata ubiquitin-like protein (NEDD8 homologue), putative XP_952120.1 781561 D 5874 CDS TA14045 3861731 complement(join(781897..781988,782029..782109,782276..782495,782584..783369,783403..783630,783692..783694)) 2 1 NC_011099.1 U4/U6 snRNP-associated protein, putative 783694 3861731 TA14045 Theileria annulata U4/U6 snRNP-associated protein, putative XP_952121.1 781897 R 5874 CDS TA14040 3861730 join(783910..784380,784411..784521,784552..784673,784736..785510,785541..785666,785697..785974,786009..786120,786152..786228,786258..786792,786848..787153) 2 1 NC_011099.1 chr2.C.cand.189 - hypothetical protein; uncharacterized protein 787153 3861730 TA14040 Theileria annulata uncharacterized protein XP_952122.1 783910 D 5874 CDS TA14035 3861729 complement(787259..788080) 2 1 NC_011099.1 chr2.cand.330 - hypothetical protein; uncharacterized protein 788080 3861729 TA14035 Theileria annulata uncharacterized protein XP_952123.1 787259 R 5874 CDS TA14030 3861728 788958..792293 2 1 NC_011099.1 chr2.C.cand.191 - possible signal anchor, transmembrane protein; 11 probable transmembrane helices predicted for TA14030 by TMHMM2.0 at aa 12-34, 39-61, 68-87, 91-113, 126-148, 158-180, 234-256, 276-298, 305-322, 337-359 and 799-821; Signal anchor predicted for TA14030 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.954) with cleavage site probability 0.001 between residues 25 and 26; uncharacterized protein 792293 3861728 TA14030 Theileria annulata uncharacterized protein XP_952124.1 788958 D 5874 CDS TA14025 3861727 792617..796123 2 1 NC_011099.1 chr2.C.cand.192 - signal peptide, transmembrane protein; 13 probable transmembrane helices predicted for TA14025 by TMHMM2.0 at aa 20-42, 57-74, 79-98, 103-121, 128-147, 151-173, 185-204, 224-243, 318-337, 385-407, 414-436, 859-881 and 985-1007; uncharacterized protein 796123 3861727 TA14025 Theileria annulata uncharacterized protein XP_952125.1 792617 D 5874 CDS TA14020 3861726 796456..797796 2 1 NC_011099.1 chr2.C.cand.193 - TLDc domain in TBC and LysM domain containing proteins; uncharacterized protein 797796 3861726 TA14020 Theileria annulata uncharacterized protein XP_952126.1 796456 D 5874 CDS TA14015 3861725 join(797914..800400,800479..800788,800859..800974,801044..801355,801387..801569) 2 1 NC_011099.1 uncharacterized protein 801569 3861725 TA14015 Theileria annulata uncharacterized protein XP_952127.1 797914 D 5874 CDS TA14010 3861724 complement(join(802152..802462,802492..802681)) 2 1 NC_011099.1 all_bases.C.cand.423 - hypothetical protein; uncharacterized protein 802681 3861724 TA14010 Theileria annulata uncharacterized protein XP_952128.1 802152 R 5874 CDS TA14005 3861723 802915..803772 2 1 NC_011099.1 chr2.C.cand.196 - hypothetical protein; uncharacterized protein 803772 3861723 TA14005 Theileria annulata uncharacterized protein XP_952129.1 802915 D 5874 CDS TA14000 3861722 complement(join(803839..803991,804023..804144,804307..804376,804408..804520,804605..804704)) 2 1 NC_011099.1 all_bases.C.cand.422 - hypothetical protein, conserved, pfi0770C; uncharacterized protein 804704 3861722 TA14000 Theileria annulata uncharacterized protein XP_952130.1 803839 R 5874 CDS TA13995 3861721 complement(join(804823..804885,805028..805354,805383..805595,805675..805782)) 2 1 NC_011099.1 all_bases.C.cand.421 - casein kinase ii beta chain; casein kinase II beta chain, putative 805782 3861721 TA13995 Theileria annulata casein kinase II beta chain, putative XP_952131.1 804823 R 5874 CDS TA13990 3861720 join(806156..806564,806616..807971,808011..808430,808479..808952,808987..809019,809141..809385) 2 1 NC_011099.1 chr2.C.cand.197 - hypothetical protein; uncharacterized protein 809385 3861720 TA13990 Theileria annulata uncharacterized protein XP_952132.1 806156 D 5874 CDS TA13985 3861719 join(809964..810533,810793..811827) 2 1 NC_011099.1 uncharacterized protein 811827 3861719 TA13985 Theileria annulata uncharacterized protein XP_952133.1 809964 D 5874 CDS TA13980 3861718 complement(join(811911..812102,812277..812869,813099..813184,813246..813367,813539..813709,814008..814235,814396..815138,815298..815357,815544..815682,815816..815873,815910..816454)) 2 1 NC_011099.1 chr2.cand.322 - hypothetical protein; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA13980 by SignalP 2.0 HMM (Signal peptide probability 0.712, signal anchor probability 0.009) with cleavage site probability 0.269 between residues 19 and 20; uncharacterized protein 816454 3861718 TA13980 Theileria annulata uncharacterized protein XP_952134.1 811911 R 5874 CDS TA13975 3861717 join(816656..817097,817325..818430) 2 1 NC_011099.1 peptidyl-prolyl cis-trans isomerase, putative 818430 3861717 TA13975 Theileria annulata peptidyl-prolyl cis-trans isomerase, putative XP_952135.1 816656 D 5874 CDS TA13970 3861928 complement(join(818823..819028,819122..822884)) 2 1 NC_011099.1 chr2.cand.321 - hypothetical protein; Signal peptide predicted for TA13970 by SignalP 2.0 HMM (Signal peptide probability 0.608, signal anchor probability 0.000) with cleavage site probability 0.359 between residues 24 and 25; uncharacterized protein 822884 3861928 TA13970 Theileria annulata uncharacterized protein XP_952136.1 818823 R 5874 CDS TA13965 3861927 complement(823238..824494) 2 1 NC_011099.1 chr2.cand.320 - hypothetical protein; uncharacterized protein 824494 3861927 TA13965 Theileria annulata uncharacterized protein XP_952137.1 823238 R 5874 CDS TA13950 3861924 complement(join(824888..826680,826947..827189,827350..829254,829816..830871,831084..831264)) 2 1 NC_011099.1 pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit, putative 831264 3861924 TA13950 Theileria annulata pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit, putative XP_952138.1 824888 R 5874 CDS TA13945 3861923 831993..832583 2 1 NC_011099.1 chr2.C.cand.201 - guanylate kinase; guanylate kinase, putative 832583 3861923 TA13945 Theileria annulata guanylate kinase, putative XP_952139.1 831993 D 5874 CDS TA13940 3861922 join(832872..833374,833431..834760,834891..835244) 2 1 NC_011099.1 chr2.C.cand.202 - membrane protein, putative; 5 probable transmembrane helices predicted for TA13940 by TMHMM2.0 at aa 81-103, 143-165, 559-581, 641-663 and 705-727; uncharacterized protein 835244 3861922 TA13940 Theileria annulata uncharacterized protein XP_952140.1 832872 D 5874 CDS TA13935 3861921 complement(join(835719..835941,836076..836341)) 2 1 NC_011099.1 chr2.cand.314 - hypothetical protein, signal peptide, apicoplast targetting sequence; hypothetical apicoplast protein; uncharacterized protein 836341 3861921 TA13935 Theileria annulata uncharacterized protein XP_952141.1 835719 R 5874 CDS TA13930 3861920 836486..836764 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA13930 by TMHMM2.0 at aa 19-41; Signal anchor predicted for TA13930 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.979) with cleavage site probability 0.000 between residues 40 and 41; uncharacterized protein 836764 3861920 TA13930 Theileria annulata uncharacterized protein XP_952142.1 836486 D 5874 CDS TA13925 3861919 join(836767..836830,836901..836948,837002..837156) 2 1 NC_011099.1 chr2.C.cand.203 - score = 10.91; uncharacterized protein 837156 3861919 TA13925 Theileria annulata uncharacterized protein XP_952143.1 836767 D 5874 CDS TA13920 3861918 join(838034..838145,838254..838453) 2 1 NC_011099.1 GPI-Anchor Signal predicted for TA13920 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 838453 3861918 TA13920 Theileria annulata uncharacterized protein XP_952144.1 838034 D 5874 CDS TA13915 3861917 complement(838599..840539) 2 1 NC_011099.1 chr2.cand.313 - hypothetical protein; uncharacterized protein 840539 3861917 TA13915 Theileria annulata uncharacterized protein XP_952145.1 838599 R 5874 CDS TA13910 3861916 841109..842389 2 1 NC_011099.1 chr2.C.cand.205 - PF00573 60S Ribosomal protein L4/L1 family; 60S ribosomal subunit protein L4/L1, putative 842389 3861916 TA13910 Theileria annulata 60S ribosomal subunit protein L4/L1, putative XP_952146.1 841109 D 5874 CDS TA13905 3861915 join(843754..844088,844342..844653,844861..844951,845140..845290,845387..845496,845520..845573,845675..845741,845864..845994,846080..846367,846558..846768,846826..846896) 2 1 NC_011099.1 hypothetical protein; 8 probable transmembrane helices predicted for TA13905 by TMHMM2.0 at aa 93-115, 248-270, 282-304, 319-341, 348-370, 400-422, 474-496 and 506-525; uncharacterized protein 846896 3861915 TA13905 Theileria annulata uncharacterized protein XP_952147.1 843754 D 5874 CDS TA13895 3861913 join(847017..847395,847435..847673) 2 1 NC_011099.1 chr2.C.cand.208 - PF01168 Alanine racemase, N-terminal domain UPF0001, possible proline synthetase associated protein; proline synthetase associated protein, putative 847673 3861913 TA13895 Theileria annulata proline synthetase associated protein, putative XP_952148.1 847017 D 5874 CDS TA13890 3861912 complement(join(847773..848390,848489..848715,848783..849538,849630..850205,850304..851059,851202..851496)) 2 1 NC_011099.1 chr2.cand.311 - hypothetical protein; 1 probable transmembrane helix predicted for TA13890 by TMHMM2.0 at aa 993-1015; uncharacterized protein 851496 3861912 TA13890 Theileria annulata uncharacterized protein XP_952149.1 847773 R 5874 CDS TA13885 3861911 852106..852696 2 1 NC_011099.1 chr2.C.cand.211 - hypothetical protein, signal peptide; secreted protein, putative; Signal peptide predicted for TA13885 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.976 between residues 17 and 18; uncharacterized protein 852696 3861911 TA13885 Theileria annulata uncharacterized protein XP_952150.1 852106 D 5874 CDS TA13880 3861910 complement(join(853067..853966,854140..854337,854560..854777,855020..855203,855319..855468)) 2 1 NC_011099.1 hypothetical protein, conserved, pfe0380C; uncharacterized protein 855468 3861910 TA13880 Theileria annulata uncharacterized protein XP_952151.1 853067 R 5874 CDS TA13875 3861812 complement(join(855699..855890,855996..856141,856352..856511,856637..856897,857102..857192,857476..857852,857901..858695)) 2 1 NC_011099.1 membrane protein, Rhomboid family; chr2.cand.307 - PF01694 Rhomboid family - membrane protein, protease; 7 probable transmembrane helices predicted for TA13875 by TMHMM2.0 at aa 267-289, 391-413, 423-445, 452-471, 481-498, 503-520 and 600-622; uncharacterized protein 858695 3861812 TA13875 Theileria annulata uncharacterized protein XP_952152.1 855699 R 5874 CDS TA13870 3861811 complement(join(859209..859759,859867..860065)) 2 1 NC_011099.1 chr2.cand.306 - hypothetical protein, conserved, pfi1455C; uncharacterized protein 860065 3861811 TA13870 Theileria annulata uncharacterized protein XP_952153.1 859209 R 5874 CDS TA13865 3861810 complement(join(860455..860900,861046..861484)) 2 1 NC_011099.1 chr2.cand.305 - PF00227 proteasome A-type and B-type; proteasome subunit y, putative 861484 3861810 TA13865 Theileria annulata proteasome subunit y, putative XP_952154.1 860455 R 5874 CDS TA13860 3861809 join(861865..862259,862339..862756) 2 1 NC_011099.1 chr2.C.cand.212 - Rab family small GTPase, signal peptide; GTP-binding protein, Rab-family, putative 862756 3861809 TA13860 Theileria annulata GTP-binding protein, Rab-family, putative XP_952155.1 861865 D 5874 CDS TA13855 3861808 complement(join(862880..863022,863422..863744,863985..864123,864239..864429,864617..864708,864749..864828,864931..865354)) 2 1 NC_011099.1 nucleolar protein, PF01189 NOL1/NOP2/sun family; nucleolar protein, putative 865354 3861808 TA13855 Theileria annulata nucleolar protein, putative XP_952156.1 862880 R 5874 CDS TA13850 3861807 complement(join(865453..865872,866026..866100)) 2 1 NC_011099.1 chr2.cand.303 - hypothetical protein, conserved, pfi1565W, PF00235 profilin; uncharacterized protein 866100 3861807 TA13850 Theileria annulata uncharacterized protein XP_952157.1 865453 R 5874 CDS TA13845 3861806 join(866643..866965,867290..867828,868221..868399,868628..868906,869061..869273) 2 1 NC_011099.1 hypothetical protein, conserved, pfi1560C, signal peptide, transmembrane/DUF21 domain; 3 probable transmembrane helices predicted for TA13845 by TMHMM2.0 at aa 20-42, 84-103 and 110-132; Signal anchor predicted for TA13845 by SignalP 2.0 HMM (Signal peptide probability 0.089, signal anchor probability 0.836) with cleavage site probability 0.043 between residues 41 and 42; uncharacterized protein 869273 3861806 TA13845 Theileria annulata uncharacterized protein XP_952158.1 866643 D 5874 CDS TA13840 3861805 complement(join(869509..869720,869750..869875,869905..870085,870119..870166)) 2 1 NC_011099.1 hypothetical protein; 1 probable transmembrane helix predicted for TA13840 by TMHMM2.0 at aa 126-148; uncharacterized protein 870166 3861805 TA13840 Theileria annulata uncharacterized protein XP_952159.1 869509 R 5874 CDS TA13835 3861804 join(871141..871534,871857..873427,873522..873647,873677..873724) 2 1 NC_011099.1 chr2.C.cand.215 - sulfate transporter; 10 probable transmembrane helices predicted for TA13835 by TMHMM2.0 at aa 169-191, 198-220, 235-257, 264-286, 301-323, 330-352, 398-420, 432-454, 469-491 and 539-571; sulfate transporter, putative 873724 3861804 TA13835 Theileria annulata sulfate transporter, putative XP_952160.1 871141 D 5874 CDS TA13830 3861803 join(873827..873865,873895..874248,874281..874381,874411..874530,874568..874604) 2 1 NC_011099.1 chr2.C.cand.217 - hypothetical protein; uncharacterized protein 874604 3861803 TA13830 Theileria annulata uncharacterized protein XP_952161.1 873827 D 5874 CDS TA13825 3861802 875121..875762 2 1 NC_011099.1 chr2.C.cand.218 - signal peptide, transmembrane; 1 probable transmembrane helix predicted for TA13825 by TMHMM2.0 at aa 187-209; Signal peptide predicted for TA13825 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.719 between residues 16 and 17; GPI-Anchor Signal predicted for TA13825 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 875762 3861802 TA13825 Theileria annulata uncharacterized protein XP_952162.1 875121 D 5874 CDS TA13820 3861801 876151..876750 2 1 NC_011099.1 chr2.C.cand.219 - hypothetical protein, signal peptide, transmembrane, low similarity to ts-chitose type 23 kDa piroplasm surface protein; 1 probable transmembrane helix predicted for TA13820 by TMHMM2.0 at aa 176-198; GPI-Anchor Signal predicted for TA13820 by DGPI v2.04 with cleavage site probability 0.24939999 near 174; uncharacterized protein 876750 3861801 TA13820 Theileria annulata uncharacterized protein XP_952163.1 876151 D 5874 CDS TA13815 3861800 877110..877751 2 1 NC_011099.1 chr2.C.cand.220 - hypothetical protein, signal peptide transmembrane, low similarity to ts-chitose type 23 kDa piroplasm surface protein; 2 probable transmembrane helices predicted for TA13815 by TMHMM2.0 at aa 4-21 and 195-212; Signal peptide predicted for TA13815 by SignalP 2.0 HMM (Signal peptide probability 0.975, signal anchor probability 0.012) with cleavage site probability 0.664 between residues 16 and 17; GPI-Anchor Signal predicted for TA13815 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 877751 3861800 TA13815 Theileria annulata uncharacterized protein XP_952164.1 877110 D 5874 CDS TA13810 3861799 877952..878641 2 1 NC_011099.1 chr2.C.cand.221 - ts-chitose type 23 kDa piroplasm surface protein, signal peptide, transmembrane; 1 probable transmembrane helix predicted for TA13810 by TMHMM2.0 at aa 204-226; Signal peptide predicted for TA13810 by SignalP 2.0 HMM (Signal peptide probability 0.930, signal anchor probability 0.000) with cleavage site probability 0.401 between residues 24 and 25; GPI-Anchor Signal predicted for TA13810 by DGPI v2.04, no cleavage site predicted; ts-chitose type 23 kDa piroplasm surface-like protein, putative 878641 3861799 TA13810 Theileria annulata ts-chitose type 23 kDa piroplasm surface-like protein, putative XP_952165.1 877952 D 5874 CDS TA13805 3861798 complement(join(879945..880170,880412..881551,881666..881790)) 2 1 NC_011099.1 PF01798 Putative snoRNA binding domain; nucleolar protein nop5, putative 881790 3861798 TA13805 Theileria annulata nucleolar protein nop5, putative XP_952166.1 879945 R 5874 CDS TA13800 3861797 882073..882888 2 1 NC_011099.1 chr2.C.cand.223 - hypothetical protein; uncharacterized protein 882888 3861797 TA13800 Theileria annulata uncharacterized protein XP_952167.1 882073 D 5874 CDS TA13790 3861795 complement(join(882952..883180,883254..883714,883766..884003,884182..884456,884500..884514)) 2 1 NC_011099.1 PF00149 Calcineurin-like phosphoesterase; (Lariat) debranching enzyme (dbr1 homologue), putative 884514 3861795 TA13790 Theileria annulata (Lariat) debranching enzyme (dbr1 homologue), putative XP_952168.1 882952 R 5874 CDS TA13785 3861794 join(884680..884733,884768..884852,884887..884934,885035..885198) 2 1 NC_011099.1 2 probable transmembrane helices predicted for TA13785 by TMHMM2.0 at aa 29-51 and 82-104; Signal anchor predicted for TA13785 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.660) with cleavage site probability 0.000 between residues 47 and 48; uncharacterized protein 885198 3861794 TA13785 Theileria annulata uncharacterized protein XP_952169.1 884680 D 5874 CDS TA13780 3861793 complement(885258..886409) 2 1 NC_011099.1 chr2.cand.299 - hypothetical protein, conserved, pfi1425W, some similarity to tif; uncharacterized protein 886409 3861793 TA13780 Theileria annulata uncharacterized protein XP_952170.1 885258 R 5874 CDS TA13775 3861909 join(886659..886705,886802..887012) 2 1 NC_011099.1 GPI-Anchor Signal predicted for TA13775 by DGPI v2.04 with cleavage site probability 0.3306 near 47; uncharacterized protein 887012 3861909 TA13775 Theileria annulata uncharacterized protein XP_952171.1 886659 D 5874 CDS TA13770 3861908 join(887029..887161,887232..887659) 2 1 NC_011099.1 all_bases.cand.1420 - small GTPase; small GTPase, putative 887659 3861908 TA13770 Theileria annulata small GTPase, putative XP_952172.1 887029 D 5874 CDS TA13765 3861907 complement(join(887721..888048,888110..888484,888555..888755,888787..889034)) 2 1 NC_011099.1 chr2.cand.298 - score = 10.43; chr2.cand.298 - NADH-cytochrome b5 reductase, putative, Oxidoreductase NAD-binding domain; NADH-cytochrome b5 reductase, putative 889034 3861907 TA13765 Theileria annulata NADH-cytochrome b5 reductase, putative XP_952173.1 887721 R 5874 CDS TA13760 3861906 complement(889178..889861) 2 1 NC_011099.1 chr2.cand.297 - u1 small nuclear ribonucleoprotein 70 kDa; U1 small nuclear ribonucleoprotein 70 kDa, putative 889861 3861906 TA13760 Theileria annulata U1 small nuclear ribonucleoprotein 70 kDa, putative XP_952174.1 889178 R 5874 CDS TA13755 3861905 join(890339..890428,890468..891790) 2 1 NC_011099.1 chr2.C.cand.225 - hypothetical protein, signal peptide, transmembrane; membrane protein, putative; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA13755 by TMHMM2.0 at aa 176-198, 285-302 and 322-344; Signal peptide predicted for TA13755 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.694 between residues 18 and 19; uncharacterized protein 891790 3861905 TA13755 Theileria annulata uncharacterized protein XP_952175.1 890339 D 5874 CDS TA13750 3861904 complement(join(892321..892411,892443..892576,892666..896166)) 2 1 NC_011099.1 isoleucyl-trna synthetase, putative, PF00133 tRNA synthetases class I (I, L, M and V); Signal peptide predicted for TA13750 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.000) with cleavage site probability 0.532 between residues 15 and 16; isoleucyl-trna synthetase, putative 896166 3861904 TA13750 Theileria annulata isoleucyl-trna synthetase, putative XP_952176.1 892321 R 5874 CDS TA13745 3861903 complement(join(896245..896319,896414..897304)) 2 1 NC_011099.1 chr2.cand.294 - hypothetical protein; uncharacterized protein 897304 3861903 TA13745 Theileria annulata uncharacterized protein XP_952177.1 896245 R 5874 CDS TA13730 3861900 join(897783..898054,898086..898449) 2 1 NC_011099.1 chr2.C.cand.226 - hypothetical protein, conserved, pfl1195W; uncharacterized protein 898449 3861900 TA13730 Theileria annulata uncharacterized protein XP_952178.1 897783 D 5874 CDS TA13725 3861899 complement(join(898693..898804,898834..898938,898981..899058,899090..899163)) 2 1 NC_011099.1 RNA binding protein, possible branch site protein; RNA binding protein, putative 899163 3861899 TA13725 Theileria annulata RNA binding protein, putative XP_952179.1 898693 R 5874 CDS TA13720 3861898 join(899955..900056,900203..903092,903193..904841) 2 1 NC_011099.1 chr2.C.cand.227 - hypothetical protein; 1 probable transmembrane helix predicted for TA13720 by TMHMM2.0 at aa 1524-1541; Signal peptide predicted for TA13720 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.683 between residues 19 and 20; GPI-Anchor Signal predicted for TA13720 by DGPI v2.04 with cleavage site probability 0.516 near 1520; uncharacterized protein 904841 3861898 TA13720 Theileria annulata uncharacterized protein XP_952180.1 899955 D 5874 CDS TA13715 3861897 complement(join(904904..905143,905234..905361,905454..906424,906530..906696)) 2 1 NC_011099.1 chr2.cand.293 - 5'-3' exonuclease; 5'-3' exonuclease, putative 906696 3861897 TA13715 Theileria annulata 5'-3' exonuclease, putative XP_952181.1 904904 R 5874 CDS TA13710 3861896 join(906863..906979,907047..907156,907226..907259,907292..907349,907402..907499,907564..907686) 2 1 NC_011099.1 chr2.C.cand.228 - hypothetical protein, conserved, pfb0177C; uncharacterized protein 907686 3861896 TA13710 Theileria annulata uncharacterized protein XP_952182.1 906863 D 5874 CDS TA13705 3861895 complement(909289..910296) 2 1 NC_011099.1 chr2.cand.292 - hypothetical protein; uncharacterized protein 910296 3861895 TA13705 Theileria annulata uncharacterized protein XP_952183.1 909289 R 5874 CDS TA13700 3861894 complement(910845..911786) 2 1 NC_011099.1 chr2.cand.291 - hypothetical protein; uncharacterized protein 911786 3861894 TA13700 Theileria annulata uncharacterized protein XP_952184.1 910845 R 5874 CDS TA13695 3861893 912057..912425 2 1 NC_011099.1 chr2.C.cand.229 - hypothetical protein; uncharacterized protein 912425 3861893 TA13695 Theileria annulata uncharacterized protein XP_952185.1 912057 D 5874 CDS TA13690 3861892 913250..914152 2 1 NC_011099.1 chr2.C.cand.230 - hypothetical protein; uncharacterized protein 914152 3861892 TA13690 Theileria annulata uncharacterized protein XP_952186.1 913250 D 5874 CDS TA13685 3861891 join(914489..914544,914638..915116,915172..915325,915350..915557) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA13685 by TMHMM2.0 at aa 273-295; uncharacterized protein 915557 3861891 TA13685 Theileria annulata uncharacterized protein XP_952187.1 914489 D 5874 CDS TA13680 3861832 join(916074..916471,916548..916905,916948..917803,917847..918946) 2 1 NC_011099.1 chr2.C.cand.232 - DNA replication licensing factor; DNA replication licensing factor, putative 918946 3861832 TA13680 Theileria annulata DNA replication licensing factor, putative XP_952188.1 916074 D 5874 CDS TA13675 3861831 complement(join(919057..919239,919271..919355,919387..919443,919495..919619)) 2 1 NC_011099.1 all_bases.C.cand.392 - hypothetical protein; uncharacterized protein 919619 3861831 TA13675 Theileria annulata uncharacterized protein XP_952189.1 919057 R 5874 CDS TA13670 3861830 complement(join(919843..919884,919905..920126,920174..920267,920346..920476,920528..920706,920726..920833,921155..921191)) 2 1 NC_011099.1 ubiquitin fusion degradation protein (UFD1 homologue), putative 921191 3861830 TA13670 Theileria annulata ubiquitin fusion degradation protein (UFD1 homologue), putative XP_952190.1 919843 R 5874 CDS TA13665 3861829 join(921279..921435,921498..921563,921604..921659,921709..921805,921872..922017) 2 1 NC_011099.1 chr2.C.cand.233 - hypothetical protein; 4 probable transmembrane helices predicted for TA13665 by TMHMM2.0 at aa 23-40, 47-69, 74-91 and 104-123; uncharacterized protein 922017 3861829 TA13665 Theileria annulata uncharacterized protein XP_952191.1 921279 D 5874 CDS TA13660 3861828 complement(join(922084..922210,922277..922438,922506..922588,922618..923786,923832..923918,923987..924143)) 2 1 NC_011099.1 all_bases.C.cand.390 - N2,N2-dimethylguanosine tRNA methyltransferase; N2,N2-dimethylguanosine tRNA methyltransferase, putative 924143 3861828 TA13660 Theileria annulata N2,N2-dimethylguanosine tRNA methyltransferase, putative XP_952192.1 922084 R 5874 CDS TA13655 3861827 join(924794..925976,926055..928789) 2 1 NC_011099.1 chr2.C.cand.234 - calcium-transporting ATPase; 8 probable transmembrane helices predicted for TA13655 by TMHMM2.0 at aa 69-88, 98-117, 216-238, 271-288, 309-331, 1049-1071, 1156-1178 and 1193-1210; calcium-transporting ATPase, putative 928789 3861827 TA13655 Theileria annulata calcium-transporting ATPase, putative XP_952193.1 924794 D 5874 CDS TA13650 3861826 929200..929859 2 1 NC_011099.1 chr2.C.cand.235 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative 929859 3861826 TA13650 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952194.1 929200 D 5874 CDS TA13645 3861825 complement(join(929924..931206,931275..932631,932717..933465,933531..933666,933734..934069,934127..934513)) 2 1 NC_011099.1 chr2.cand.285 - hypothetical protein, conserved, mal8p1.134, contains 5 x SMART SM0239 C2 Protein kinase C conserved region 2 (CalB), transmembrane domain; 1 probable transmembrane helix predicted for TA13645 by TMHMM2.0 at aa 1395-1414; uncharacterized protein 934513 3861825 TA13645 Theileria annulata uncharacterized protein XP_952195.1 929924 R 5874 CDS TA13640 3861824 join(935215..935384,935439..935512,935567..935655,935727..935840,935875..935943,936026..936084,936115..936250) 2 1 NC_011099.1 chr2.C.cand.236 - hypothetical protein, possible cdk-activating kinase assembly factor; CDK-activating kinase assembly factor, putative 936250 3861824 TA13640 Theileria annulata CDK-activating kinase assembly factor, putative XP_952196.1 935215 D 5874 CDS TA13635 3861823 join(936391..936683,936723..936957) 2 1 NC_011099.1 chr2.C.cand.236 - hypothetical protein; uncharacterized protein 936957 3861823 TA13635 Theileria annulata uncharacterized protein XP_952197.1 936391 D 5874 CDS TA13625 3861821 937059..937586 2 1 NC_011099.1 chr2.C.cand.237 - hypothetical protein; uncharacterized protein 937586 3861821 TA13625 Theileria annulata uncharacterized protein XP_952198.1 937059 D 5874 CDS TA13620 3861820 937654..939615 2 1 NC_011099.1 chr2.C.cand.237 - hypothetical protein; uncharacterized protein 939615 3861820 TA13620 Theileria annulata uncharacterized protein XP_952199.1 937654 D 5874 CDS TA13615 3861819 join(939738..940254,940312..940529,940582..940639,940762..940937) 2 1 NC_011099.1 chr2.C.cand.237 - hypothetical protein; uncharacterized protein 940937 3861819 TA13615 Theileria annulata uncharacterized protein XP_952200.1 939738 D 5874 CDS TA13610 3861818 join(941072..941120,941236..942702,942790..943232,943302..943759,943793..944138,944170..944354,944384..944519) 2 1 NC_011099.1 all_bases.cand.1431 - ATP dependent RNA helicase; ATP-dependent RNA helicase, putative 944519 3861818 TA13610 Theileria annulata ATP-dependent RNA helicase, putative XP_952201.1 941072 D 5874 CDS TA13605 3861817 join(944883..945029,945113..945165,945246..945357,945393..945488,945554..945716,945788..945905,945981..946036,946089..946288) 2 1 NC_011099.1 chr2.C.cand.239 - hypothetical protein, conserved, DUF 259; uncharacterized protein 946288 3861817 TA13605 Theileria annulata uncharacterized protein XP_952202.1 944883 D 5874 CDS TA13600 3861816 complement(join(946502..947508,947546..947990)) 2 1 NC_011099.1 chr2.cand.283 - DnaJ domain protein; DnaJ domain protein; molecular chaperone, putative 947990 3861816 TA13600 Theileria annulata molecular chaperone, putative XP_952203.1 946502 R 5874 CDS TA13595 3861815 join(949438..949567,949649..950310,950483..950629) 2 1 NC_011099.1 chr2.C.cand.240 - hypothetical protein; uncharacterized protein 950629 3861815 TA13595 Theileria annulata uncharacterized protein XP_952204.1 949438 D 5874 CDS TA13590 3861814 951032..954967 2 1 NC_011099.1 chr2.C.cand.241 - hypothetical protein; 4 probable transmembrane helices predicted for TA13590 by TMHMM2.0 at aa 7-29, 1170-1189, 1196-1213 and 1264-1283; Signal peptide predicted for TA13590 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.012) with cleavage site probability 0.378 between residues 24 and 25; uncharacterized protein 954967 3861814 TA13590 Theileria annulata uncharacterized protein XP_952205.1 951032 D 5874 CDS TA13585 3861813 complement(join(955000..955126,955205..955320,955363..956106,956163..956441,956506..956635,956735..956751)) 2 1 NC_011099.1 chr2.cand.282 - SKIP/SNW domain; chromatin-binding protein, putative 956751 3861813 TA13585 Theileria annulata chromatin-binding protein, putative XP_952206.1 955000 R 5874 CDS TA13580 3862469 957862..958899 2 1 NC_011099.1 chr2.C.cand.242 - ring/PHD finger; ring finger protein, putative; uncharacterized protein 958899 3862469 TA13580 Theileria annulata uncharacterized protein XP_952207.1 957862 D 5874 CDS TA13565 3862466 959287..961914 2 1 NC_011099.1 chr2.C.cand.243 - helicase; DNA helicase (SGS1 homologue), putative 961914 3862466 TA13565 Theileria annulata DNA helicase (SGS1 homologue), putative XP_952208.1 959287 D 5874 CDS TA13560 3862465 complement(join(962021..962857,962923..962987,963049..963325,963439..963522)) 2 1 NC_011099.1 chr2.cand.281 - putative centromere/microtubule binding protein, belongs to the trub family of pseudouridine synthases, contains PF01509 TruB family pseudouridylate synthase (N terminal domain), PF01472 PUA domain; centromere/microtubule binding protein, putative 963522 3862465 TA13560 Theileria annulata centromere/microtubule binding protein, putative XP_952209.1 962021 R 5874 CDS TA13555 3862464 964437..971852 2 1 NC_011099.1 chr2.C.cand.244 - hypothetical protein; uncharacterized protein 971852 3862464 TA13555 Theileria annulata uncharacterized protein XP_952210.1 964437 D 5874 CDS TA13550 3862463 join(972375..972989,973047..973072,973102..973288,973451..973567,973598..973705) 2 1 NC_011099.1 all_bases.cand.1438 - peptidase C54 domain; autophagy-related peptidase, putative 973705 3862463 TA13550 Theileria annulata autophagy-related peptidase, putative XP_952211.1 972375 D 5874 CDS TA13545 3862462 join(973907..973985,974057..977247) 2 1 NC_011099.1 chr2.C.cand.246 - hypothetical protein; uncharacterized protein 977247 3862462 TA13545 Theileria annulata uncharacterized protein XP_952212.1 973907 D 5874 CDS TA13540 3862461 complement(977369..985339) 2 1 NC_011099.1 chr2.cand.277 - hypothetical protein, contains 2 potential PF00027 cyclic nucleotide binding domains; uncharacterized protein 985339 3862461 TA13540 Theileria annulata uncharacterized protein XP_952213.1 977369 R 5874 CDS TA13535 3862460 complement(join(985552..985833,985868..986027,986237..986382)) 2 1 NC_011099.1 all_bases.C.cand.378 - hypothetical protein; uncharacterized protein 986382 3862460 TA13535 Theileria annulata uncharacterized protein XP_952214.1 985552 R 5874 CDS TA13530 3862459 986662..988896 2 1 NC_011099.1 chr2.C.cand.251 - phosphate transporter, signal peptide; 9 probable transmembrane helices predicted for TA13530 by TMHMM2.0 at aa 7-26, 46-68, 89-111, 145-167, 180-202, 230-252, 485-502, 531-553 and 715-737; Signal peptide predicted for TA13530 by SignalP 2.0 HMM (Signal peptide probability 0.634, signal anchor probability 0.363) with cleavage site probability 0.220 between residues 23 and 24; phosphate transporter, putative 988896 3862459 TA13530 Theileria annulata phosphate transporter, putative XP_952215.1 986662 D 5874 CDS TA13525 3862458 complement(join(989058..990308,990401..990979,991036..991127,991166..991244)) 2 1 NC_011099.1 chr2.cand.274 - hypothetical protein; uncharacterized protein 991244 3862458 TA13525 Theileria annulata uncharacterized protein XP_952216.1 989058 R 5874 CDS TA13520 3862457 join(991924..992142,992194..992488,992547..993979) 2 1 NC_011099.1 chr2.C.cand.252 - ATP-dependent RNA helicase; ATP-dependent RNA helicase, putative 993979 3862457 TA13520 Theileria annulata ATP-dependent RNA helicase, putative XP_952217.1 991924 D 5874 CDS TA13515 3862456 complement(994148..995962) 2 1 NC_011099.1 chr2.cand.273 - hypothetical protein, conserved, pfl1085W; uncharacterized protein 995962 3862456 TA13515 Theileria annulata uncharacterized protein XP_952218.1 994148 R 5874 CDS TA13510 3862455 join(997778..998186,998273..998520) 2 1 NC_011099.1 chr2.C.cand.253 - hypothetical protein, conserved, pfl1090W; uncharacterized protein 998520 3862455 TA13510 Theileria annulata uncharacterized protein XP_952219.1 997778 D 5874 CDS TA13505 3862454 complement(join(998737..998842,998885..999083,999113..999152,999262..999396)) 2 1 NC_011099.1 all_bases.C.cand.374 - hypothetical protein; 1 probable transmembrane helix predicted for TA13505 by TMHMM2.0 at aa 21-43; Signal anchor predicted for TA13505 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.890) with cleavage site probability 0.001 between residues 36 and 37; uncharacterized protein 999396 3862454 TA13505 Theileria annulata uncharacterized protein XP_952220.1 998737 R 5874 CDS TA13500 3862453 join(1000178..1000210,1000279..1000368,1000404..1000472,1000538..1000596,1000627..1000714,1000748..1000815,1000865..1001187,1001253..1001317,1001346..1001492) 2 1 NC_011099.1 all_bases.cand.1445 - camp-dependent protein kinase regulatory subunit, 2 x cyclic nucleotide binding domains; cAMP-dependent protein kinase regulatory subunit, putative 1001492 3862453 TA13500 Theileria annulata cAMP-dependent protein kinase regulatory subunit, putative XP_952221.1 1000178 D 5874 CDS TA13495 3862452 complement(join(1001550..1002571,1002666..1002837)) 2 1 NC_011099.1 chr2.cand.271 - signal peptide, transmembrane; 5 probable transmembrane helices predicted for TA13495 by TMHMM2.0 at aa 13-35, 45-67, 148-165, 175-197 and 214-231; Signal anchor predicted for TA13495 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.977) with cleavage site probability 0.003 between residues 22 and 23; uncharacterized protein 1002837 3862452 TA13495 Theileria annulata uncharacterized protein XP_952222.1 1001550 R 5874 CDS TA13490 3862451 1003252..1004436 2 1 NC_011099.1 chr2.C.cand.255 - hypothetical protein; uncharacterized protein 1004436 3862451 TA13490 Theileria annulata uncharacterized protein XP_952223.1 1003252 D 5874 CDS TA13485 3861968 complement(1004534..1005469) 2 1 NC_011099.1 chr2.cand.270 - hypothetical protein; uncharacterized protein 1005469 3861968 TA13485 Theileria annulata uncharacterized protein XP_952224.1 1004534 R 5874 CDS TA13480 3861967 complement(join(1005614..1006821,1006890..1007005,1007042..1007118,1007172..1007371,1007462..1007831)) 2 1 NC_011099.1 chr2.cand.269 - DNAJ-like sec63 homologue; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA13480 by TMHMM2.0 at aa 23-45, 103-125 and 225-247; Signal anchor predicted for TA13480 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.891) with cleavage site probability 0.000 between residues 44 and 45; DNAJ-like sec63 homologue, putative 1007831 3861967 TA13480 Theileria annulata DNAJ-like sec63 homologue, putative XP_952225.1 1005614 R 5874 CDS TA13475 3861966 complement(join(1008063..1008956,1009011..1009238)) 2 1 NC_011099.1 chr2.cand.268 - hypothetical protein; uncharacterized protein 1009238 3861966 TA13475 Theileria annulata uncharacterized protein XP_952226.1 1008063 R 5874 CDS TA13470 3861965 complement(join(1009558..1009666,1009767..1009846,1009882..1009947,1010014..1010117,1010175..1010370,1010438..1010555,1010605..1010642)) 2 1 NC_011099.1 chr2.cand.267 - vacuolar ATP synthase subunit d; vacuolar ATP synthase subunit d, putative 1010642 3861965 TA13470 Theileria annulata vacuolar ATP synthase subunit d, putative XP_952227.1 1009558 R 5874 CDS TA13460 3861963 complement(1010919..1011575) 2 1 NC_011099.1 chr2.cand.266 - 40s ribosomal subunit protein s6; 40S ribosomal subunit protein S6, putative 1011575 3861963 TA13460 Theileria annulata 40S ribosomal subunit protein S6, putative XP_952228.1 1010919 R 5874 CDS TA13455 3861962 complement(join(1012356..1012686,1012787..1012791)) 2 1 NC_011099.1 One 3-prime exon possible; uncharacterized protein 1012791 3861962 TA13455 Theileria annulata uncharacterized protein XP_952229.1 1012356 R 5874 CDS TA13450 3861961 join(1013344..1013414,1013448..1014261,1014344..1014564,1014598..1014874) 2 1 NC_011099.1 chr2.C.cand.256 - hypothetical protein; uncharacterized protein 1014874 3861961 TA13450 Theileria annulata uncharacterized protein XP_952230.1 1013344 D 5874 CDS TA13445 3861960 complement(join(1014954..1015220,1015254..1015841)) 2 1 NC_011099.1 chr2.cand.264 - hypothetical protein; uncharacterized protein 1015841 3861960 TA13445 Theileria annulata uncharacterized protein XP_952231.1 1014954 R 5874 CDS TA13440 3861959 1016042..1016944 2 1 NC_011099.1 chr2.C.cand.257 - hypothetical protein; uncharacterized protein 1016944 3861959 TA13440 Theileria annulata uncharacterized protein XP_952232.1 1016042 D 5874 CDS TA13435 3861958 complement(1017257..1017523) 2 1 NC_011099.1 chr2.cand.263 - score = 6.31; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA13435 by TMHMM2.0 at aa 31-53; Signal anchor predicted for TA13435 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.964) with cleavage site probability 0.000 between residues 46 and 47; uncharacterized protein 1017523 3861958 TA13435 Theileria annulata uncharacterized protein XP_952233.1 1017257 R 5874 CDS TA13430 3861957 complement(1017777..1019273) 2 1 NC_011099.1 chr2.cand.262 - transmembrane; 10 probable transmembrane helices predicted for TA13430 by TMHMM2.0 at aa 20-42, 100-122, 134-156, 166-188, 201-223, 252-274, 287-309, 359-381, 401-423 and 433-455; Tpr-related protein family member, putative 1019273 3861957 TA13430 Theileria annulata Tpr-related protein family member, putative XP_952234.1 1017777 R 5874 CDS TA13425 3861956 complement(join(1019482..1019664,1019726..1020045,1020087..1020267,1020428..1020783,1020835..1026889)) 2 1 NC_011099.1 hypothetical protein, conserved Theileria family, signal peptide; Signal peptide predicted for TA13425 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.003) with cleavage site probability 0.675 between residues 19 and 20; SfiI-subtelomeric fragment related protein family member, putative 1026889 3861956 TA13425 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952235.1 1019482 R 5874 CDS TA13420 3861955 complement(join(1026918..1027345,1027384..1027519,1027551..1027688,1027720..1027887,1027979..1028037,1028093..1028279,1028338..1028434,1028495..1030904,1030951..1031065,1031133..1031336)) 2 1 NC_011099.1 chr2.cand.260 - hypothetical transmembrane protein; transmembrane protein, putative; 9 probable transmembrane helices predicted for TA13420 by TMHMM2.0 at aa 109-131, 317-339, 980-999, 1052-1074, 1084-1101, 1129-1151, 1191-1213, 1225-1247 and 1267-1289; uncharacterized protein 1031336 3861955 TA13420 Theileria annulata uncharacterized protein XP_952236.1 1026918 R 5874 CDS TA13415 3861954 join(1031490..1031581,1031635..1031758,1031799..1031867) 2 1 NC_011099.1 chr2.C.cand.260 - hypothetical protein, conserved, pf13_0296; uncharacterized protein 1031867 3861954 TA13415 Theileria annulata uncharacterized protein XP_952237.1 1031490 D 5874 CDS TA13400 3861951 complement(1031953..1032993) 2 1 NC_011099.1 chr2.cand.259 - hypothetical protein, signal peptide; uncharacterized protein 1032993 3861951 TA13400 Theileria annulata uncharacterized protein XP_952238.1 1031953 R 5874 CDS TA13395 3861950 join(1033029..1033255,1033298..1033526,1033567..1033857) 2 1 NC_011099.1 chr2.C.cand.261 - hypothetical protein, conserved, pf11_0163; uncharacterized protein 1033857 3861950 TA13395 Theileria annulata uncharacterized protein XP_952239.1 1033029 D 5874 CDS TA13390 3861949 join(1033920..1033968,1034004..1034140,1034172..1034225,1034256..1034333,1034363..1034428) 2 1 NC_011099.1 all_bases.cand.1453 - hypothetical protein; uncharacterized protein 1034428 3861949 TA13390 Theileria annulata uncharacterized protein XP_952240.1 1033920 D 5874 CDS TA13385 3861566 complement(join(1034650..1035434,1035477..1035990)) 2 1 NC_011099.1 chr2.cand.258 - conserved hypothetical transmembrane protein; 11 probable transmembrane helices predicted for TA13385 by TMHMM2.0 at aa 21-43, 58-80, 87-109, 119-141, 148-170, 174-191, 211-233, 248-267, 280-302, 317-339 and 352-374; Tpr-related protein family member, putative 1035990 3861566 TA13385 Theileria annulata Tpr-related protein family member, putative XP_952241.1 1034650 R 5874 CDS TA13380 3861565 complement(join(1036531..1036854,1036894..1037097,1037150..1037323,1037377..1038052,1038085..1038183,1038266..1038490,1038555..1038662,1038728..1038861,1038896..1038925)) 2 1 NC_011099.1 RNA processing protein (crooked neck family), putative 1038925 3861565 TA13380 Theileria annulata RNA processing protein (crooked neck family), putative XP_952242.1 1036531 R 5874 CDS TA13375 3861564 complement(join(1038986..1039066,1039096..1039191,1039250..1039348,1039440..1039679,1039741..1039881,1039915..1040038,1040072..1040144,1040184..1040300,1040329..1040467,1040562..1040627)) 2 1 NC_011099.1 chr2.cand.256 - PF00781 Diacylglycerol kinase catalytic domain (presumed), PF00609 Diacylglycerol kinase accessory domain (presumed); diacylglycerol kinase, putative 1040627 3861564 TA13375 Theileria annulata diacylglycerol kinase, putative XP_952243.1 1038986 R 5874 CDS TA13370 3861563 complement(join(1041155..1041337,1041366..1041479,1041509..1041684,1041731..1041986,1042034..1042081,1042122..1042238)) 2 1 NC_011099.1 chr2.cand.255 - hypothetical protein, conserved, pf14_0682, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA13370 by TMHMM2.0 at aa 7-24; Signal peptide predicted for TA13370 by SignalP 2.0 HMM (Signal peptide probability 0.622, signal anchor probability 0.374) with cleavage site probability 0.415 between residues 29 and 30; uncharacterized protein 1042238 3861563 TA13370 Theileria annulata uncharacterized protein XP_952244.1 1041155 R 5874 CDS TA13365 3861562 join(1042492..1042500,1042537..1043028) 2 1 NC_011099.1 chr2.C.cand.262 - hypothetical protein; uncharacterized protein 1043028 3861562 TA13365 Theileria annulata uncharacterized protein XP_952245.1 1042492 D 5874 CDS TA13360 3861561 1043138..1043875 2 1 NC_011099.1 chr2.C.cand.263 - hypothetical protein, signal peptide; Signal peptide predicted for TA13360 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.701 between residues 17 and 18; uncharacterized protein 1043875 3861561 TA13360 Theileria annulata uncharacterized protein XP_952246.1 1043138 D 5874 CDS TA13355 3861560 join(1043985..1044063,1044140..1044555,1044590..1044688,1044718..1044862,1044931..1045166) 2 1 NC_011099.1 chr2.C.cand.264 - conserved hypothetical protein, jmjC domain, PF02246 Protein L b1 domain; uncharacterized protein 1045166 3861560 TA13355 Theileria annulata uncharacterized protein XP_952247.1 1043985 D 5874 CDS TA13345 3861558 complement(join(1045229..1045849,1045910..1046038)) 2 1 NC_011099.1 chr2.cand.254 - hypothetical protein; uncharacterized protein 1046038 3861558 TA13345 Theileria annulata uncharacterized protein XP_952248.1 1045229 R 5874 CDS TA13340 3861557 complement(join(1046292..1046511,1046616..1046676,1046706..1046823,1046862..1046986,1047046..1047125,1047186..1047257,1047290..1047362,1047402..1047534,1047571..1047687,1047730..1047819,1047877..1048101)) 2 1 NC_011099.1 chr2.cand.253 - DNA polymerase delta small subunit; DNA polymerase delta small subunit, putative 1048101 3861557 TA13340 Theileria annulata DNA polymerase delta small subunit, putative XP_952249.1 1046292 R 5874 CDS TA13335 3861556 complement(join(1048198..1048353,1048398..1048485,1048518..1048653,1048690..1048774)) 2 1 NC_011099.1 chr2.cand.253 - hypothetical protein; 1 probable transmembrane helix predicted for TA13335 by TMHMM2.0 at aa 130-152; (SNARE-interacting) vesicle transport protein, putative 1048774 3861556 TA13335 Theileria annulata (SNARE-interacting) vesicle transport protein, putative XP_952250.1 1048198 R 5874 CDS TA13330 3861555 join(1049396..1049590,1049632..1049742,1049812..1051599) 2 1 NC_011099.1 chr2.C.cand.265 - hypothetical protein; uncharacterized protein 1051599 3861555 TA13330 Theileria annulata uncharacterized protein XP_952251.1 1049396 D 5874 CDS TA13325 3861554 join(1051987..1053057,1053138..1053848,1053907..1056234) 2 1 NC_011099.1 chr2.C.cand.266 - DNA topoisomerase ii; DNA topoisomerase II, putative 1056234 3861554 TA13325 Theileria annulata DNA topoisomerase II, putative XP_952252.1 1051987 D 5874 CDS TA13320 3861553 join(1056328..1057642,1057673..1057790,1057867..1058881) 2 1 NC_011099.1 all_bases.cand.1459 - fork-head domain protein; uncharacterized protein 1058881 3861553 TA13320 Theileria annulata uncharacterized protein XP_952253.1 1056328 D 5874 CDS TA13315 3861552 join(1059437..1059532,1059693..1060916) 2 1 NC_011099.1 chr2.C.cand.269 - beta tubulin; tubulin beta chain, putative 1060916 3861552 TA13315 Theileria annulata tubulin beta chain, putative XP_952254.1 1059437 D 5874 CDS TA13310 3861551 complement(join(1061763..1061868,1061899..1062137,1062243..1062338,1062369..1062475,1062506..1062621,1062655..1062974)) 2 1 NC_011099.1 all_bases.C.cand.356 - cell differentiation protein; cell differentiation protein (RCD1 homologue), putative 1062974 3861551 TA13310 Theileria annulata cell differentiation protein (RCD1 homologue), putative XP_952255.1 1061763 R 5874 CDS TA13305 3861550 complement(join(1063297..1063997,1064066..1064296,1064331..1065348)) 2 1 NC_011099.1 chr2.cand.249 - protein kinase; uncharacterized protein 1065348 3861550 TA13305 Theileria annulata uncharacterized protein XP_952256.1 1063297 R 5874 CDS TA13300 3861549 join(1066886..1067001,1067035..1067183,1067279..1067452,1067504..1067595) 2 1 NC_011099.1 chr2.C.cand.270 - score = 17.25; uncharacterized protein 1067595 3861549 TA13300 Theileria annulata uncharacterized protein XP_952257.1 1066886 D 5874 CDS TA13295 3861548 join(1067659..1067725,1067764..1068089,1068116..1068479,1068510..1068567,1068599..1068706,1068741..1068776,1068823..1068859) 2 1 NC_011099.1 chr2.C.cand.271 - hypothetical protein, conserved, mal4p2.40; uncharacterized protein 1068859 3861548 TA13295 Theileria annulata uncharacterized protein XP_952258.1 1067659 D 5874 CDS TA13290 3862262 join(1069544..1071189,1071226..1071328,1071358..1071567,1071598..1071807) 2 1 NC_011099.1 all_bases.cand.1462 - ABC transporter; 5 probable transmembrane helices predicted for TA13290 by TMHMM2.0 at aa 136-158, 178-200, 265-287, 291-313 and 377-399; ABC transporter protein, putative 1071807 3862262 TA13290 Theileria annulata ABC transporter protein, putative XP_952259.1 1069544 D 5874 CDS TA13285 3862261 complement(join(1071922..1072089,1072166..1072547,1072601..1072672,1072707..1072766,1072810..1073039,1073069..1073265,1073298..1073332,1073406..1073458)) 2 1 NC_011099.1 all_bases.C.cand.353 - hypothetical protein, pf13_0274, DUF254 motif; uncharacterized protein 1073458 3862261 TA13285 Theileria annulata uncharacterized protein XP_952260.1 1071922 R 5874 CDS TA13280 3862260 join(1074038..1076455,1076518..1077038,1077068..1077166,1077196..1077520) 2 1 NC_011099.1 chr2.C.cand.273 - hypothetical protein, exonuclease domain; exonuclease, putative 1077520 3862260 TA13280 Theileria annulata exonuclease, putative XP_952261.1 1074038 D 5874 CDS TA13275 3862259 complement(join(1077768..1078149,1078191..1078365,1078407..1078703,1078791..1079057,1079088..1079178,1079225..1079584)) 2 1 NC_011099.1 all_bases.C.cand.352 - hypothetical membrane protein; membrane protein, putative; 12 probable transmembrane helices predicted for TA13275 by TMHMM2.0 at aa 65-87, 102-124, 136-153, 158-180, 210-232, 242-264, 316-338, 353-375, 395-414, 424-446, 467-489 and 499-521; uncharacterized protein 1079584 3862259 TA13275 Theileria annulata uncharacterized protein XP_952262.1 1077768 R 5874 CDS TA13270 3862258 complement(join(1080828..1080886,1080918..1080991,1081021..1081143,1081173..1081303,1081339..1081505,1081544..1081623,1081653..1081872,1081912..1082161)) 2 1 NC_011099.1 all_bases.C.cand.351 - hypothetical protein, conserved, pfb0501C; uncharacterized protein 1082161 3862258 TA13270 Theileria annulata uncharacterized protein XP_952263.1 1080828 R 5874 CDS TA13265 3862257 join(1082394..1082791,1082821..1083550) 2 1 NC_011099.1 all_bases.cand.1465 - GTP-binding protein, GTP1_OBJ domain; GTP-binding protein, putative 1083550 3862257 TA13265 Theileria annulata GTP-binding protein, putative XP_952264.1 1082394 D 5874 CDS TA13260 3862256 complement(1083618..1084553) 2 1 NC_011099.1 chr2.cand.243 - mitochondrial carrier protein; 4 probable transmembrane helices predicted for TA13260 by TMHMM2.0 at aa 20-37, 120-142, 214-236 and 272-294; oxoglutarate/malate translocator protein, putative 1084553 3862256 TA13260 Theileria annulata oxoglutarate/malate translocator protein, putative XP_952265.1 1083618 R 5874 CDS TA13255 3862255 complement(join(1084881..1085053,1085086..1087042)) 2 1 NC_011099.1 chr2.cand.242 - hypothetical protein; uncharacterized protein 1087042 3862255 TA13255 Theileria annulata uncharacterized protein XP_952266.1 1084881 R 5874 CDS TA13250 3862254 complement(join(1087476..1088514,1088544..1088757,1088787..1089139,1089174..1089238)) 2 1 NC_011099.1 all_bases.C.cand.348 - hypothetical protein, conserved pf13_0018, SM0667, LisH Lissencephaly type-1-like homology motif, WD40 domains; uncharacterized protein 1089238 3862254 TA13250 Theileria annulata uncharacterized protein XP_952267.1 1087476 R 5874 CDS TA13240 3862252 complement(1089506..1091851) 2 1 NC_011099.1 chr2.cand.240 - hypothetical protein; uncharacterized protein 1091851 3862252 TA13240 Theileria annulata uncharacterized protein XP_952268.1 1089506 R 5874 CDS TA13235 3862251 complement(join(1092748..1092920,1092953..1094909)) 2 1 NC_011099.1 chr2.cand.239 - hypothetical protein; uncharacterized protein 1094909 3862251 TA13235 Theileria annulata uncharacterized protein XP_952269.1 1092748 R 5874 CDS TA13230 3862250 complement(join(1095343..1096378,1096408..1096621,1096651..1097003,1097038..1097102)) 2 1 NC_011099.1 all_bases.C.cand.345 - hypothetical protein, conserved pf13_0018, SM0667, LisH Lissencephaly type-1-like homology motif, WD40 domains; uncharacterized protein 1097102 3862250 TA13230 Theileria annulata uncharacterized protein XP_952270.1 1095343 R 5874 CDS TA13225 3862249 join(1097202..1097277,1097426..1097652,1097682..1097996,1098029..1098197,1098342..1098778) 2 1 NC_011099.1 chr2.C.cand.275 - hypothetical protein; uncharacterized protein 1098778 3862249 TA13225 Theileria annulata uncharacterized protein XP_952271.1 1097202 D 5874 CDS TA13220 3862248 join(1099057..1099122,1099171..1099233,1099263..1099563,1099594..1099675,1099706..1099934,1099968..1100300,1100343..1100489,1100521..1100619) 2 1 NC_011099.1 all_bases.cand.1468 - hypothetical protein; uncharacterized protein 1100619 3862248 TA13220 Theileria annulata uncharacterized protein XP_952272.1 1099057 D 5874 CDS TA13215 3862247 join(1100860..1100959,1100999..1101636,1101667..1101913,1101946..1102106) 2 1 NC_011099.1 all_bases.cand.1469 - conserved hypothetical protein, pfe1415W, transmembrane, zinc finger; 4 probable transmembrane helices predicted for TA13215 by TMHMM2.0 at aa 71-93, 113-135, 216-238 and 253-275; uncharacterized protein 1102106 3862247 TA13215 Theileria annulata uncharacterized protein XP_952273.1 1100860 D 5874 CDS TA13210 3862246 complement(join(1102171..1102400,1102435..1102516,1102579..1102632)) 2 1 NC_011099.1 vacuolar ATP synthase subunit f; vacuolar ATP synthase subunit f, putative 1102632 3862246 TA13210 Theileria annulata vacuolar ATP synthase subunit f, putative XP_952274.1 1102171 R 5874 CDS TA13205 3862245 complement(join(1103356..1103446,1103479..1103570,1103604..1103665,1103696..1103814,1103845..1103856,1103919..1104051,1104087..1104306)) 2 1 NC_011099.1 chr2.cand.236 - hypothetical protein, conserved, pfl1080C, PF01902 Domain of unknown function DUF71; uncharacterized protein 1104306 3862245 TA13205 Theileria annulata uncharacterized protein XP_952275.1 1103356 R 5874 CDS TA13200 3862244 complement(join(1104487..1104708,1104739..1104830,1104863..1104930,1104961..1105241,1105283..1105465,1105499..1105594,1105625..1105727,1105757..1105896,1105929..1106000,1106035..1106178)) 2 1 NC_011099.1 all_bases.C.cand.342 - replication factor a-related protein; replication factor A-related protein, putative 1106178 3862244 TA13200 Theileria annulata replication factor A-related protein, putative XP_952276.1 1104487 R 5874 CDS TA13195 3862243 join(1106550..1106802,1106835..1107331) 2 1 NC_011099.1 uncharacterized protein 1107331 3862243 TA13195 Theileria annulata uncharacterized protein XP_952277.1 1106550 D 5874 CDS TA13180 3862084 join(1107608..1108153,1108188..1108537,1108611..1108908) 2 1 NC_011099.1 (SSF, Peter Pan) family member protein, putative 1108908 3862084 TA13180 Theileria annulata (SSF, Peter Pan) family member protein, putative XP_952278.1 1107608 D 5874 CDS TA13175 3862083 1109138..1109902 2 1 NC_011099.1 chr2.C.cand.281 - nucleoside phosphorylase; purine nucleoside phosphorylase, putative 1109902 3862083 TA13175 Theileria annulata purine nucleoside phosphorylase, putative XP_952279.1 1109138 D 5874 CDS TA13170 3862082 complement(1109947..1110717) 2 1 NC_011099.1 chr2.cand.233 - nucleoside phosphorylase; purine nucleoside phosphorylase, putative 1110717 3862082 TA13170 Theileria annulata purine nucleoside phosphorylase, putative XP_952280.1 1109947 R 5874 CDS TA13165 3862081 1110921..1111691 2 1 NC_011099.1 chr2.C.cand.282 - nucleoside phosphorylase, PF01048 Phosphorylase family; purine nucleoside phosphorylase, putative 1111691 3862081 TA13165 Theileria annulata purine nucleoside phosphorylase, putative XP_952281.1 1110921 D 5874 CDS TA13160 3862080 1112600..1114912 2 1 NC_011099.1 chr2.C.cand.283 - hypothetical protein, conserved, pf10_01831; uncharacterized protein 1114912 3862080 TA13160 Theileria annulata uncharacterized protein XP_952282.1 1112600 D 5874 CDS TA13155 3862079 join(1115278..1115688,1115750..1116036,1116066..1116129,1116196..1116304,1116337..1116412,1116450..1116621,1116684..1116815) 2 1 NC_011099.1 chr2.C.cand.284 - PF00587 tRNA synthetase class II core domain (G, H, P, S and T); histidyl-trna synthetase, putative 1116815 3862079 TA13155 Theileria annulata histidyl-trna synthetase, putative XP_952283.1 1115278 D 5874 CDS TA13150 3862078 complement(join(1116931..1117256,1117385..1117561,1117599..1117672,1117815..1117963)) 2 1 NC_011099.1 uncharacterized protein 1117963 3862078 TA13150 Theileria annulata uncharacterized protein XP_952284.1 1116931 R 5874 CDS TA13145 3862077 complement(join(1118133..1118915,1118998..1119252)) 2 1 NC_011099.1 chr2.cand.232 - hypothetical protein, conserved, PF00899 ThiF family; uncharacterized protein 1119252 3862077 TA13145 Theileria annulata uncharacterized protein XP_952285.1 1118133 R 5874 CDS TA13140 3862076 complement(join(1119518..1120003,1120036..1120698)) 2 1 NC_011099.1 chr2.cand.231 - hypothetical protein; uncharacterized protein 1120698 3862076 TA13140 Theileria annulata uncharacterized protein XP_952286.1 1119518 R 5874 CDS TA13135 3862075 complement(join(1121215..1121313,1121397..1121502,1121533..1121764,1121795..1121864,1121894..1121986,1122017..1122255,1122313..1122404,1122444..1123440,1123519..1123732)) 2 1 NC_011099.1 all_bases.C.cand.338 - DEAD box helicase; ATP-dependent RNA helicase, putative 1123732 3862075 TA13135 Theileria annulata ATP-dependent RNA helicase, putative XP_952287.1 1121215 R 5874 CDS TA13125 3862073 join(1124216..1124980,1125033..1125245,1125318..1126796) 2 1 NC_011099.1 chr2.C.cand.285 - ATP-dependent peptidase, PF00004 ATPase family associated with various cellular activities (AAA), PF01434 peptidase family M41; mitochondrial respiratory chain complexes assembly protein (AFG3 homologue), putative 1126796 3862073 TA13125 Theileria annulata mitochondrial respiratory chain complexes assembly protein (AFG3 homologue), putative XP_952288.1 1124216 D 5874 CDS TA13120 3862072 join(1127138..1127498,1127585..1127688,1127718..1127813) 2 1 NC_011099.1 all_bases.cand.1476 - hypothetical protein, conserved, pf08_0079, PF01253 translation initiation factor SUI1; uncharacterized protein 1127813 3862072 TA13120 Theileria annulata uncharacterized protein XP_952289.1 1127138 D 5874 CDS TA13115 3862071 complement(join(1127929..1128470,1128562..1128742)) 2 1 NC_011099.1 chr2.cand.229 - hypothetical protein; uncharacterized protein 1128742 3862071 TA13115 Theileria annulata uncharacterized protein XP_952290.1 1127929 R 5874 CDS TA13110 3862070 1128983..1129369 2 1 NC_011099.1 chr2.C.cand.287 - hypothetical protein; uncharacterized protein 1129369 3862070 TA13110 Theileria annulata uncharacterized protein XP_952291.1 1128983 D 5874 CDS TA13105 3862069 complement(1129406..1131082) 2 1 NC_011099.1 chr2.cand.228 - hypothetical protein; uncharacterized protein 1131082 3862069 TA13105 Theileria annulata uncharacterized protein XP_952292.1 1129406 R 5874 CDS TA13100 3862068 join(1132322..1132459,1132540..1132635,1132703..1134112) 2 1 NC_011099.1 all_bases.cand.1479 - signal recognition particle receptor alpha subunit; signal recognition particle receptor alpha subunit, putative 1134112 3862068 TA13100 Theileria annulata signal recognition particle receptor alpha subunit, putative XP_952293.1 1132322 D 5874 CDS TA13095 3862027 complement(join(1134199..1134380,1134442..1134709)) 2 1 NC_011099.1 chr2.cand.227 - nucleoside diphosphate kinase; nucleoside diphosphate kinase, putative 1134709 3862027 TA13095 Theileria annulata nucleoside diphosphate kinase, putative XP_952294.1 1134199 R 5874 CDS TA13090 3862026 1135044..1136825 2 1 NC_011099.1 uncharacterized protein 1136825 3862026 TA13090 Theileria annulata uncharacterized protein XP_952295.1 1135044 D 5874 CDS TA13085 3862025 1137059..1142611 2 1 NC_011099.1 uncharacterized protein 1142611 3862025 TA13085 Theileria annulata uncharacterized protein XP_952296.1 1137059 D 5874 CDS TA13080 3862024 complement(join(1142830..1143836,1143979..1144335,1144463..1144761,1144798..1145027)) 2 1 NC_011099.1 chr2.cand.226 - hypothetical protein, transmembrane domains; 2 probable transmembrane helices predicted for TA13080 by TMHMM2.0 at aa 124-146 and 153-175; uncharacterized protein 1145027 3862024 TA13080 Theileria annulata uncharacterized protein XP_952297.1 1142830 R 5874 CDS TA13075 3862023 complement(join(1145429..1145761,1145868..1146167)) 2 1 NC_011099.1 chr2.cand.225 - hypothetical membrane protein, signal peptide, transmembrane domains; membrane protein, putative; 4 probable transmembrane helices predicted for TA13075 by TMHMM2.0 at aa 21-43, 58-80, 85-107 and 134-156; Signal anchor predicted for TA13075 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.998) with cleavage site probability 0.001 between residues 46 and 47; uncharacterized protein 1146167 3862023 TA13075 Theileria annulata uncharacterized protein XP_952298.1 1145429 R 5874 CDS TA13070 3862022 join(1146624..1146679,1146748..1147120) 2 1 NC_011099.1 chr2.C.cand.293 - clathrin coat assembly protein PF01217 clathrin adaptor complex small chain; clathrin-coat assembly protein, putative 1147120 3862022 TA13070 Theileria annulata clathrin-coat assembly protein, putative XP_952299.1 1146624 D 5874 CDS TA13065 3862021 complement(join(1147441..1147766,1147815..1148076)) 2 1 NC_011099.1 chr2.cand.224 - hypothetical membrane protein; hypothetical membrane protein; 4 probable transmembrane helices predicted for TA13065 by TMHMM2.0 at aa 25-47, 60-79, 83-101 and 121-143; uncharacterized protein 1148076 3862021 TA13065 Theileria annulata uncharacterized protein XP_952300.1 1147441 R 5874 CDS TA13060 3862020 complement(1148262..1148615) 2 1 NC_011099.1 chr2.cand.223 - hypothetical protein; uncharacterized protein 1148615 3862020 TA13060 Theileria annulata uncharacterized protein XP_952301.1 1148262 R 5874 CDS TA13055 3862019 complement(join(1148977..1151645,1151688..1151973)) 2 1 NC_011099.1 chr2.cand.222 - hypothetical protein, conserved, pf11_0433, TPR domain, DnaJ domain; uncharacterized protein 1151973 3862019 TA13055 Theileria annulata uncharacterized protein XP_952302.1 1148977 R 5874 CDS TA13050 3862018 join(1152406..1152420,1152453..1152559,1152589..1152728,1152834..1152928,1152959..1153013,1153044..1153360,1153617..1153666,1153779..1153931,1154024..1154109,1154182..1154238,1154270..1154578,1154715..1154821) 2 1 NC_011099.1 chr2.C.cand.296 - hypothetical protein, conserved; uncharacterized protein 1154821 3862018 TA13050 Theileria annulata uncharacterized protein XP_952303.1 1152406 D 5874 CDS TA13045 3862017 join(1155230..1155464,1155497..1155705,1155742..1156216,1156281..1157212) 2 1 NC_011099.1 chr2.C.cand.297 - signal peptide, some similarity to carbonic anhydrase; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA13045 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.000) with cleavage site probability 0.417 between residues 22 and 23; GPI-Anchor Signal predicted for TA13045 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1157212 3862017 TA13045 Theileria annulata uncharacterized protein XP_952304.1 1155230 D 5874 CDS TA13040 3862016 complement(join(1157370..1157516,1157610..1157843,1157951..1158048,1158105..1158378,1158478..1158901,1158947..1160247)) 2 1 NC_011099.1 chr2.cand.221 - hypothetical protein; uncharacterized protein 1160247 3862016 TA13040 Theileria annulata uncharacterized protein XP_952305.1 1157370 R 5874 CDS TA13035 3862015 1160585..1162666 2 1 NC_011099.1 chr2.C.cand.298 - pre-mrna splicing factor, WD40 domains; pre-mRNA splicing factor (PRP17 homologue), putative 1162666 3862015 TA13035 Theileria annulata pre-mRNA splicing factor (PRP17 homologue), putative XP_952306.1 1160585 D 5874 CDS TA13030 3862014 join(1162715..1163177,1163212..1163340,1163391..1163614) 2 1 NC_011099.1 chr2.C.cand.299 - hypothetical protein; uncharacterized protein 1163614 3862014 TA13030 Theileria annulata uncharacterized protein XP_952307.1 1162715 D 5874 CDS TA13020 3862012 1163815..1164540 2 1 NC_011099.1 chr2.C.cand.300 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative 1164540 3862012 TA13020 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952308.1 1163815 D 5874 CDS TA13015 3862011 complement(1164641..1165564) 2 1 NC_011099.1 chr2.cand.220 - hypothetical protein; uncharacterized protein 1165564 3862011 TA13015 Theileria annulata uncharacterized protein XP_952309.1 1164641 R 5874 CDS TA13010 3862010 complement(join(1165607..1166983,1167082..1168032)) 2 1 NC_011099.1 chr2.cand.219 - PF00612 IQ calmodulin-binding motif; uncharacterized protein 1168032 3862010 TA13010 Theileria annulata uncharacterized protein XP_952310.1 1165607 R 5874 CDS TA13005 3862009 complement(join(1168167..1168619,1168754..1168813,1168846..1168938,1168968..1169095,1169124..1169183,1169235..1170147,1170234..1170414,1170444..1170604,1170766..1171120,1171155..1171260,1171291..1171306)) 2 1 NC_011099.1 chr2.cand.219 - PF00612 IQ calmodulin-binding motif; uncharacterized protein 1171306 3862009 TA13005 Theileria annulata uncharacterized protein XP_952311.1 1168167 R 5874 CDS TA13000 3862008 join(1171667..1171828,1171919..1172083,1172148..1172312,1172369..1172477,1172512..1172682,1172712..1172806,1172886..1172928,1172981..1173093,1173184..1173418,1173463..1173653) 2 1 NC_011099.1 chr2.C.cand.301 - hypothetical protein, conserved, pf13_0190, three TPR domains; uncharacterized protein 1173653 3862008 TA13000 Theileria annulata uncharacterized protein XP_952312.1 1171667 D 5874 CDS TA12995 3862488 1173968..1175815 2 1 NC_011099.1 chr2.C.cand.302 - DNA binding protein, PF00249 Myb-like DNA-binding domain; uncharacterized protein 1175815 3862488 TA12995 Theileria annulata uncharacterized protein XP_952313.1 1173968 D 5874 CDS TA12990 3862487 complement(1175947..1176261) 2 1 NC_011099.1 chr2.cand.217 - hypothetical protein; uncharacterized protein 1176261 3862487 TA12990 Theileria annulata uncharacterized protein XP_952314.1 1175947 R 5874 CDS TA12985 3862486 complement(join(1176475..1176630,1176662..1176844,1176928..1177074,1177135..1177905)) 2 1 NC_011099.1 all_bases.C.cand.326 - hypothetical protein; uncharacterized protein 1177905 3862486 TA12985 Theileria annulata uncharacterized protein XP_952315.1 1176475 R 5874 CDS TA12980 3862485 complement(join(1178098..1178166,1178207..1178300,1178331..1178641,1178672..1178846,1178880..1179073,1179125..1179229,1179278..1179543,1179644..1180753,1180842..1180945,1180978..1181057)) 2 1 NC_011099.1 chr2.cand.215 - PF00169 PH domain pleckstrin homology PF01237 oxysterol-binding protein; oxysterol binding protein-related protein 1, putative 1181057 3862485 TA12980 Theileria annulata oxysterol binding protein-related protein 1, putative XP_952316.1 1178098 R 5874 CDS TA12975 3862484 complement(1181537..1181974) 2 1 NC_011099.1 chr2.cand.214 - hypothetical protein; uncharacterized protein 1181974 3862484 TA12975 Theileria annulata uncharacterized protein XP_952317.1 1181537 R 5874 CDS TA12965 3862482 join(1183027..1184282,1184376..1185292,1185372..1185483,1185514..1185625) 2 1 NC_011099.1 all_bases.cand.1488 - calcium-dependent protein kinase; calcium-dependent protein kinase, putative 1185625 3862482 TA12965 Theileria annulata calcium-dependent protein kinase, putative XP_952318.1 1183027 D 5874 CDS TA12960 3862481 complement(1185789..1186883) 2 1 NC_011099.1 chr2.cand.212 - hypothetical protein, PF00627 UBA/TS-N domain; ubiquitin-related protein, putative; uncharacterized protein 1186883 3862481 TA12960 Theileria annulata uncharacterized protein XP_952319.1 1185789 R 5874 CDS TA12955 3862480 complement(join(1187342..1187503,1187545..1187667,1187702..1187855,1187925..1188098,1188158..1188362,1188429..1188972)) 2 1 NC_011099.1 hypothetical protein, transmembrane; 3 probable transmembrane helices predicted for TA12955 by TMHMM2.0 at aa 7-29, 329-351 and 384-406; uncharacterized protein 1188972 3862480 TA12955 Theileria annulata uncharacterized protein XP_952320.1 1187342 R 5874 CDS TA12950 3862479 join(1189325..1189427,1189481..1189576,1189611..1189759) 2 1 NC_011099.1 all_bases.cand.1489 - cytochrome c; cytochrome C, putative 1189759 3862479 TA12950 Theileria annulata cytochrome C, putative XP_952321.1 1189325 D 5874 CDS TA12945 3862478 join(1190258..1190493,1190546..1190665,1190697..1190934,1190965..1191237,1191268..1191345) 2 1 NC_011099.1 all_bases.cand.1490 - hypothetical protein, conserved, pf14_0034, signal peptide, TLC TRAM, LAG1 and CLN8 homology domains.; 5 probable transmembrane helices predicted for TA12945 by TMHMM2.0 at aa 25-42, 142-164, 184-206, 226-248 and 269-291; uncharacterized protein 1191345 3862478 TA12945 Theileria annulata uncharacterized protein XP_952322.1 1190258 D 5874 CDS TA12940 3862477 complement(join(1191397..1191565,1191694..1191838,1191867..1192197)) 2 1 NC_011099.1 all_bases.C.cand.321 - hypothetical protein; uncharacterized protein 1192197 3862477 TA12940 Theileria annulata uncharacterized protein XP_952323.1 1191397 R 5874 CDS TA12935 3862476 complement(join(1192323..1192436,1192469..1192551,1192583..1192684,1192714..1192821,1192852..1193047,1193110..1193159,1193185..1193328,1193362..1193398,1193431..1193538,1193569..1193652,1193714..1193797,1193853..1193867)) 2 1 NC_011099.1 all_bases.C.cand.321 - translocation protein sec62, putative; 2 probable transmembrane helices predicted for TA12935 by TMHMM2.0 at aa 177-199 and 224-246; translocation protein (SEC62 homologue), putative 1193867 3862476 TA12935 Theileria annulata translocation protein (SEC62 homologue), putative XP_952324.1 1192323 R 5874 CDS TA12930 3862475 join(1194182..1194328,1194359..1194577) 2 1 NC_011099.1 all_bases.cand.1491 - ribosomal protein l20; ribosomal protein L20, putative 1194577 3862475 TA12930 Theileria annulata ribosomal protein L20, putative XP_952325.1 1194182 D 5874 CDS TA12925 3862474 complement(1194705..1199396) 2 1 NC_011099.1 12 probable transmembrane helices predicted for TA12925 by TMHMM2.0 at aa 154-176, 189-207, 212-234, 296-318, 333-355, 407-429, 449-471, 856-878, 923-945, 1016-1038, 1108-1130 and 1137-1159; (subtelomeric) ABC-transporter family member, putative 1199396 3862474 TA12925 Theileria annulata (subtelomeric) ABC-transporter family member, putative XP_952326.1 1194705 R 5874 CDS TA12920 3862473 complement(1200036..1204619) 2 1 NC_011099.1 chr2.cand.206 - ABC transporter; 11 probable transmembrane helices predicted for TA12920 by TMHMM2.0 at aa 139-161, 176-198, 283-305, 320-342, 394-416, 436-458, 837-859, 902-924, 972-994, 999-1021 and 1084-1106; (subtelomeric) ABC-transporter protein family member, putative 1204619 3862473 TA12920 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_952327.1 1200036 R 5874 CDS TA12905 3862470 join(1205221..1205446,1205488..1205671,1205727..1206102,1206136..1206243,1206275..1206466,1206497..1206651,1206683..1206744,1206774..1206841,1206871..1206960) 2 1 NC_011099.1 all_bases.cand.1492 - splicing factor 3 subunit 1, PF01805 Surp module (SWAP domain); splicing factor 3 subunit 1, putative 1206960 3862470 TA12905 Theileria annulata splicing factor 3 subunit 1, putative XP_952328.1 1205221 D 5874 CDS TA12900 3861792 complement(1206991..1211610) 2 1 NC_011099.1 chr2.cand.205 - score = 60.15; 12 probable transmembrane helices predicted for TA12900 by TMHMM2.0 at aa 152-174, 181-200, 210-232, 294-316, 331-353, 405-427, 447-469, 847-869, 910-932, 982-1004, 1009-1031 and 1092-1114; (subtelomeric) ABC-transporter protein family member, putative 1211610 3861792 TA12900 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_952329.1 1206991 R 5874 CDS TA12895 3861791 complement(join(1212245..1212320,1212351..1212411,1212442..1212531,1212561..1212642,1212671..1212803,1212833..1213089,1213119..1213242,1213272..1213591,1213621..1213663,1213698..1214203,1214233..1214514,1214545..1215326,1215362..1215386)) 2 1 NC_011099.1 all_bases.C.cand.316 - hypothetical protein; uncharacterized protein 1215386 3861791 TA12895 Theileria annulata uncharacterized protein XP_952330.1 1212245 R 5874 CDS TA12890 3861790 join(1215697..1216558,1216590..1216979,1217048..1217314,1217379..1219045) 2 1 NC_011099.1 chr2.C.cand.308 - hypothetical protein; uncharacterized protein 1219045 3861790 TA12890 Theileria annulata uncharacterized protein XP_952331.1 1215697 D 5874 CDS TA12885 3861789 complement(join(1219112..1219168,1219240..1222848)) 2 1 NC_011099.1 chr2.cand.202 - WD40 repeat protein; uncharacterized protein 1222848 3861789 TA12885 Theileria annulata uncharacterized protein XP_952332.1 1219112 R 5874 CDS TA12880 3861788 complement(join(1223106..1223300,1223342..1223823,1223857..1223991,1224031..1224097)) 2 1 NC_011099.1 chr2.cand.201 - hypothetical protein, conserved, pf14_0717; uncharacterized protein 1224097 3861788 TA12880 Theileria annulata uncharacterized protein XP_952333.1 1223106 R 5874 CDS TA12875 3861787 join(1224860..1224976,1225010..1225067,1225131..1225215,1225265..1225445) 2 1 NC_011099.1 chr2.C.cand.309 - hypothetical protein; uncharacterized protein 1225445 3861787 TA12875 Theileria annulata uncharacterized protein XP_952334.1 1224860 D 5874 CDS TA12870 3861786 join(1225553..1225740,1225772..1225821,1225852..1225908,1225949..1226169) 2 1 NC_011099.1 all_bases.cand.1494 - PF01509 TruB family pseudouridylate synthase (N terminal domain); RNA modification (pseudouridylation) protein TruB family member, putative 1226169 3861786 TA12870 Theileria annulata RNA modification (pseudouridylation) protein TruB family member, putative XP_952335.1 1225553 D 5874 CDS TA12865 3861785 complement(1226621..1229818) 2 1 NC_011099.1 chr2.cand.200 - 2 x EF hand domains and protein phosphatase-2A (PP2A) domains; calcium-dependent protein phosphatase, putative 1229818 3861785 TA12865 Theileria annulata calcium-dependent protein phosphatase, putative XP_952336.1 1226621 R 5874 CDS TA12860 3861784 complement(join(1230332..1230427,1230459..1230618,1230647..1231289,1231321..1231483)) 2 1 NC_011099.1 all_bases.C.cand.312 - camp-dependent protein kinase catalytic subunit; cAMP-dependent protein kinase catalytic subunit, putative 1231483 3861784 TA12860 Theileria annulata cAMP-dependent protein kinase catalytic subunit, putative XP_952337.1 1230332 R 5874 CDS TA12855 3861783 complement(join(1231875..1232304,1232336..1232526)) 2 1 NC_011099.1 all_bases.C.cand.311 - small nuclear ribonucleoprotein, PF00076 RNA recognition motif; U1/2 small nuclear ribonucleoprotein, putative 1232526 3861783 TA12855 Theileria annulata U1/2 small nuclear ribonucleoprotein, putative XP_952338.1 1231875 R 5874 CDS TA12850 3861782 complement(1232592..1232810) 2 1 NC_011099.1 conserved hypothetical protein; 2 probable transmembrane helices predicted for TA12850 by TMHMM2.0 at aa 10-32 and 53-71; Signal peptide predicted for TA12850 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.019) with cleavage site probability 0.363 between residues 21 and 22; GPI-Anchor Signal predicted for TA12850 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1232810 3861782 TA12850 Theileria annulata uncharacterized protein XP_952339.1 1232592 R 5874 CDS TA12845 3861781 join(1233211..1234224,1234254..1234367,1234399..1234508,1234540..1234619,1234653..1234948) 2 1 NC_011099.1 all_bases.cand.1495 - eukaryotic translation initiation factor 3, subunit 6, putative; eukaryotic translation initiation factor 3, subunit 6, putative 1234948 3861781 TA12845 Theileria annulata eukaryotic translation initiation factor 3, subunit 6, putative XP_952340.1 1233211 D 5874 CDS TA12840 3861780 join(1235905..1236751,1236829..1236872,1236906..1237040) 2 1 NC_011099.1 all_bases.cand.1496 - hypothetical protein; uncharacterized protein 1237040 3861780 TA12840 Theileria annulata uncharacterized protein XP_952341.1 1235905 D 5874 CDS TA12835 3861779 join(1237402..1237468,1237565..1237675,1237705..1237832,1237862..1237960,1237990..1238140,1238171..1238314,1238345..1238517) 2 1 NC_011099.1 all_bases.cand.1496 - splicing factor 3b subunit 4; splicing factor 3b subunit 4, putative 1238517 3861779 TA12835 Theileria annulata splicing factor 3b subunit 4, putative XP_952342.1 1237402 D 5874 CDS TA12830 3861778 complement(join(1238543..1238622,1238651..1238749,1238783..1238858,1238888..1239067,1239101..1239164,1239193..1239324,1239359..1239588)) 2 1 NC_011099.1 all_bases.C.cand.310 - uracil-DNA glycosylase, putative; uracil-DNA glycosylase, putative 1239588 3861778 TA12830 Theileria annulata uracil-DNA glycosylase, putative XP_952343.1 1238543 R 5874 CDS TA12825 3861777 join(1239762..1240163,1240193..1240306) 2 1 NC_011099.1 all_bases.cand.1497 - hypothetical protein, conserved, pf14_0193; uncharacterized protein 1240306 3861777 TA12825 Theileria annulata uncharacterized protein XP_952344.1 1239762 D 5874 CDS TA12820 3861776 complement(1240394..1240795) 2 1 NC_011099.1 chr2.cand.196 - hypothetical protein, conserved, pfe1395C; uncharacterized protein 1240795 3861776 TA12820 Theileria annulata uncharacterized protein XP_952345.1 1240394 R 5874 CDS TA12815 3861775 join(1241395..1241559,1241590..1241680,1241713..1241789) 2 1 NC_011099.1 chr2.C.cand.315 - 60S acidic ribosomal protein P2; 60S acidic ribosomal protein p2, putative 1241789 3861775 TA12815 Theileria annulata 60S acidic ribosomal protein p2, putative XP_952346.1 1241395 D 5874 CDS TA12810 3861774 join(1241977..1242046,1242110..1242230,1242260..1242402,1242432..1242490,1242522..1242583,1242621..1242714,1242745..1242809,1242846..1243038) 2 1 NC_011099.1 all_bases.cand.1499 - hypothetical protein, conserved; uncharacterized protein 1243038 3861774 TA12810 Theileria annulata uncharacterized protein XP_952347.1 1241977 D 5874 CDS TA12800 3862144 complement(join(1243239..1243848,1243890..1243940,1243974..1244395)) 2 1 NC_011099.1 chr2.cand.195 - PF00782 Dual specificity phosphatase, catalytic domain; dual-specificity phosphatase, putative 1244395 3862144 TA12800 Theileria annulata dual-specificity phosphatase, putative XP_952348.1 1243239 R 5874 CDS TA12795 3862143 join(1244701..1245159,1245205..1245338,1245375..1245475,1245508..1245586,1245617..1246085) 2 1 NC_011099.1 all_bases.cand.1501 - score = 54.80; uncharacterized protein 1246085 3862143 TA12795 Theileria annulata uncharacterized protein XP_952349.1 1244701 D 5874 CDS TA12790 3862142 join(1246148..1246200,1246305..1246597,1246648..1247111) 2 1 NC_011099.1 50s ribosomal protein l9, signal peptide, apicoplast target sequence; 1 probable transmembrane helix predicted for TA12790 by TMHMM2.0 at aa 12-34; 50s ribosomal protein L9, putative 1247111 3862142 TA12790 Theileria annulata 50s ribosomal protein L9, putative XP_952350.1 1246148 D 5874 CDS TA12785 3862141 1247147..1247824 2 1 NC_011099.1 uncharacterized protein 1247824 3862141 TA12785 Theileria annulata uncharacterized protein XP_952351.1 1247147 D 5874 CDS TA12780 3862140 complement(join(1248045..1248883,1248936..1249206)) 2 1 NC_011099.1 chr2.cand.194 - splicing factor PWI domain; splicing factor, putative 1249206 3862140 TA12780 Theileria annulata splicing factor, putative XP_952352.1 1248045 R 5874 CDS TA12775 3862139 join(1249652..1250246,1250281..1250501) 2 1 NC_011099.1 chr2.C.cand.319 - rat brain protein-like; uncharacterized protein 1250501 3862139 TA12775 Theileria annulata uncharacterized protein XP_952353.1 1249652 D 5874 CDS TA12770 3862138 1250589..1250945 2 1 NC_011099.1 chr2.C.cand.320 - hypothetical protein; uncharacterized protein 1250945 3862138 TA12770 Theileria annulata uncharacterized protein XP_952354.1 1250589 D 5874 CDS TA12765 3862137 complement(join(1251061..1251158,1251190..1251352,1251390..1251635,1251667..1252185,1252226..1252486)) 2 1 NC_011099.1 chr2.cand.192 - PF01866 putative diphthamide synthesis protein; diphthamide synthesis protein, putative 1252486 3862137 TA12765 Theileria annulata diphthamide synthesis protein, putative XP_952355.1 1251061 R 5874 CDS TA12760 3862136 join(1253016..1253346,1253402..1255033,1255065..1255322,1255355..1255434,1255465..1255536) 2 1 NC_011099.1 chr2.C.cand.321 - hypothetical protein; uncharacterized protein 1255536 3862136 TA12760 Theileria annulata uncharacterized protein XP_952356.1 1253016 D 5874 CDS TA12755 3862135 join(1256025..1256198,1256231..1256524) 2 1 NC_011099.1 all_bases.cand.1505 - small nuclear ribonucleoprotein associated protein b; small nuclear ribonucleoprotein associated protein b, putative 1256524 3862135 TA12755 Theileria annulata small nuclear ribonucleoprotein associated protein b, putative XP_952357.1 1256025 D 5874 CDS TA12745 3862133 complement(1256651..1259962) 2 1 NC_011099.1 all_bases.C.cand.305 - lon protease homolog 2; Lon protease homolog 2, mitochondrial precursor, putative 1259962 3862133 TA12745 Theileria annulata Lon protease homolog 2, mitochondrial precursor, putative XP_952358.1 1256651 R 5874 CDS TA12740 3862132 complement(join(1260360..1260973,1261009..1261053,1261086..1263108)) 2 1 NC_011099.1 all_bases.C.cand.304 - almost identical to Spm1; Spm1 (nucleoporin) protein 1263108 3862132 TA12740 Theileria annulata Spm1 (nucleoporin) protein XP_952359.1 1260360 R 5874 CDS TA12735 3862131 join(1263397..1263539,1263571..1263648,1263684..1263855) 2 1 NC_011099.1 all_bases.cand.1507 - RNA polymerase 16kd subunit; RNA polymerase 16kd subunit, RPB4-like, putative 1263855 3862131 TA12735 Theileria annulata RNA polymerase 16kd subunit, RPB4-like, putative XP_952360.1 1263397 D 5874 CDS TA12730 3862130 complement(join(1264615..1264656,1264682..1264775,1264806..1264855,1264942..1265097,1265160..1265262,1265293..1265456,1265490..1265636)) 2 1 NC_011099.1 all_bases.C.cand.303 - hypothetical protein; uncharacterized protein 1265636 3862130 TA12730 Theileria annulata uncharacterized protein XP_952361.1 1264615 R 5874 CDS TA12725 3862129 join(1265796..1265858,1265897..1266082,1266113..1266227,1266266..1266474) 2 1 NC_011099.1 all_bases.cand.1508 - hypothetical protein; uncharacterized protein 1266474 3862129 TA12725 Theileria annulata uncharacterized protein XP_952362.1 1265796 D 5874 CDS TA12720 3862128 complement(join(1266560..1266615,1266648..1266721,1266755..1266981)) 2 1 NC_011099.1 signal peptide, apicoplast target sequence, DnaJ domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA12720 by TMHMM2.0 at aa 4-21; Signal peptide predicted for TA12720 by SignalP 2.0 HMM (Signal peptide probability 0.917, signal anchor probability 0.000) with cleavage site probability 0.845 between residues 16 and 17; chaperone, putative 1266981 3862128 TA12720 Theileria annulata chaperone, putative XP_952363.1 1266560 R 5874 CDS TA12715 3862127 join(1267221..1267354,1267391..1267469,1267500..1267574,1267605..1267661,1267693..1267770,1267801..1267926,1267957..1268058,1268087..1268127,1268160..1268225,1268254..1268332,1268362..1268637,1268680..1268817) 2 1 NC_011099.1 all_bases.cand.1510 - peptide release factor erf1, pfam erf1-3; eukaryotic peptide release factor (ERF), putative 1268817 3862127 TA12715 Theileria annulata eukaryotic peptide release factor (ERF), putative XP_952364.1 1267221 D 5874 CDS TA12710 3862126 complement(join(1268932..1269165,1269201..1269421,1269451..1269552,1269584..1269793,1269841..1269988,1270031..1270087)) 2 1 NC_011099.1 PF02230 Phospholipase/Carboxylesterase; hydrolase, putative 1270087 3862126 TA12710 Theileria annulata hydrolase, putative XP_952365.1 1268932 R 5874 CDS TA12705 3862282 complement(join(1270525..1270884,1270936..1271235,1271272..1271457,1271486..1271875)) 2 1 NC_011099.1 all_bases.C.cand.301 - signal peptide, Pfam thioredoxin; 1 probable transmembrane helix predicted for TA12705 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA12705 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.006) with cleavage site probability 0.950 between residues 25 and 26; uncharacterized protein 1271875 3862282 TA12705 Theileria annulata uncharacterized protein XP_952366.1 1270525 R 5874 CDS TA12700 3862281 complement(join(1272350..1272719,1272753..1272826,1272859..1272892,1272916..1273349,1273383..1273587,1273619..1273767)) 2 1 NC_011099.1 all_bases.C.cand.300 - PF01331 mRNA capping enzyme, catalytic domain; mRNA capping enzyme, putative 1273767 3862281 TA12700 Theileria annulata mRNA capping enzyme, putative XP_952367.1 1272350 R 5874 CDS TA12685 3862278 join(1274052..1277571,1277629..1277801,1277834..1277938) 2 1 NC_011099.1 all_bases.cand.1512 - PF03109 ABC1 family; ABC1-related protein, putative 1277938 3862278 TA12685 Theileria annulata ABC1-related protein, putative XP_952368.1 1274052 D 5874 CDS TA12680 3862277 complement(join(1278072..1278107,1278159..1278622,1278654..1279059)) 2 1 NC_011099.1 chr2.cand.185 - serine/threonine protein phosphatase pp1-gamma catalytic subunit; serine/threonine protein phosphatase 1, PP1-gamma catalytic subunit, putative 1279059 3862277 TA12680 Theileria annulata serine/threonine protein phosphatase 1, PP1-gamma catalytic subunit, putative XP_952369.1 1278072 R 5874 CDS TA12675 3862276 complement(join(1280036..1280133,1280164..1280565,1280604..1281396)) 2 1 NC_011099.1 chr2.cand.184 - Ring finger protein, PF00097 Zinc finger, C3HC4 type, PF00098 Zinc knuckle; uncharacterized protein 1281396 3862276 TA12675 Theileria annulata uncharacterized protein XP_952370.1 1280036 R 5874 CDS TA12670 3862275 complement(join(1281756..1281971,1282011..1282625)) 2 1 NC_011099.1 chr2.cand.183 - hypothetical protein; uncharacterized protein 1282625 3862275 TA12670 Theileria annulata uncharacterized protein XP_952371.1 1281756 R 5874 CDS TA12665 3862274 join(1283262..1283395,1283439..1283482,1283515..1285235) 2 1 NC_011099.1 chr2.C.cand.327 - signal, PF00380 Ribosomal protein S9/S16; 1 probable transmembrane helix predicted for TA12665 by TMHMM2.0 at aa 12-34; Signal peptide predicted for TA12665 by SignalP 2.0 HMM (Signal peptide probability 0.749, signal anchor probability 0.182) with cleavage site probability 0.582 between residues 28 and 29; ribosomal protein S9/S16, putative 1285235 3862274 TA12665 Theileria annulata ribosomal protein S9/S16, putative XP_952372.1 1283262 D 5874 CDS TA12660 3862273 join(1285342..1285471,1285511..1285662,1285693..1286559) 2 1 NC_011099.1 chr2.C.cand.328 - hypothetical protein; uncharacterized protein 1286559 3862273 TA12660 Theileria annulata uncharacterized protein XP_952373.1 1285342 D 5874 CDS TA12655 3862272 join(1286643..1286750,1286792..1286944,1287028..1287091,1287139..1287234,1287269..1287354) 2 1 NC_011099.1 chr2.C.cand.329 - hypothetical protein; uncharacterized protein 1287354 3862272 TA12655 Theileria annulata uncharacterized protein XP_952374.1 1286643 D 5874 CDS TA12650 3862271 complement(join(1287424..1287567,1287607..1287831)) 2 1 NC_011099.1 hypothetical protein, conserved, mal13p1.282; uncharacterized protein 1287831 3862271 TA12650 Theileria annulata uncharacterized protein XP_952375.1 1287424 R 5874 CDS TA12645 3862270 1287968..1289866 2 1 NC_011099.1 chr2.C.cand.330 - ubiquitin carboxy terminal hydrolase; ubiquitin carboxy-terminal hydrolase, putative 1289866 3862270 TA12645 Theileria annulata ubiquitin carboxy-terminal hydrolase, putative XP_952376.1 1287968 D 5874 CDS TA12640 3862269 join(1290033..1290140,1290185..1290241,1290275..1290484) 2 1 NC_011099.1 chr2.C.cand.331 - Arm-1 protein; adhesion regulation modulator (ARM) protein, putative 1290484 3862269 TA12640 Theileria annulata adhesion regulation modulator (ARM) protein, putative XP_952377.1 1290033 D 5874 CDS TA12630 3862267 complement(join(1290497..1290577,1290608..1290961,1290993..1291234,1291265..1291391,1291423..1291577,1291610..1291642,1291674..1291737)) 2 1 NC_011099.1 all_bases.C.cand.296 - signal peptide, apicoplast target sequence, DnaJ domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 5 probable transmembrane helices predicted for TA12630 by TMHMM2.0 at aa 30-47, 137-159, 163-185, 197-219 and 333-350; Signal anchor predicted for TA12630 by SignalP 2.0 HMM (Signal peptide probability 0.014, signal anchor probability 0.973) with cleavage site probability 0.005 between residues 17 and 18; molecular chaperone, putative 1291737 3862267 TA12630 Theileria annulata molecular chaperone, putative XP_952378.1 1290497 R 5874 CDS TA12625 3862266 1291914..1292483 2 1 NC_011099.1 chr2.C.cand.332 - hypothetical protein, possible transmembrane; 2 probable transmembrane helices predicted for TA12625 by TMHMM2.0 at aa 28-50 and 78-100; uncharacterized protein 1292483 3862266 TA12625 Theileria annulata uncharacterized protein XP_952379.1 1291914 D 5874 CDS TA12620 3862265 complement(join(1292545..1293632,1293694..1293733,1293806..1293919,1293996..1294502,1294534..1294855,1294884..1295013,1295043..1295161,1295191..1296083)) 2 1 NC_011099.1 all_bases.C.cand.295 - PF03054 tRNA methyl transferase, signal peptide, apicoplast target sequence; 1 probable transmembrane helix predicted for TA12620 by TMHMM2.0 at aa 5-27; trna methyl transferase, putative 1296083 3862265 TA12620 Theileria annulata trna methyl transferase, putative XP_952380.1 1292545 R 5874 CDS TA12615 3862264 complement(join(1296192..1296426,1296464..1296569,1296642..1296681)) 2 1 NC_011099.1 chr2.cand.180; autophagy protein 8I, putative 1296681 3862264 TA12615 Theileria annulata autophagy protein 8I, putative XP_952381.1 1296192 R 5874 CDS TA12610 3862263 join(1297388..1297537,1297580..1297735,1297767..1300010) 2 1 NC_011099.1 chr2.C.cand.333 - WD40 protein; uncharacterized protein 1300010 3862263 TA12610 Theileria annulata uncharacterized protein XP_952382.1 1297388 D 5874 CDS TA12605 3861716 complement(join(1300019..1300098,1300167..1300296,1300325..1300544,1300577..1300911)) 2 1 NC_011099.1 all_bases.C.cand.293 - hypothetical protein; uncharacterized protein 1300911 3861716 TA12605 Theileria annulata uncharacterized protein XP_952383.1 1300019 R 5874 CDS TA12600 3861715 join(1301055..1301205,1301239..1301358,1301388..1301566,1301597..1301614) 2 1 NC_011099.1 all_bases.cand.1520 - hypothetical protein, some conservation; uncharacterized protein 1301614 3861715 TA12600 Theileria annulata uncharacterized protein XP_952384.1 1301055 D 5874 CDS TA12595 3861714 complement(join(1301633..1301657,1301692..1301912,1301942..1302112,1302146..1302345,1302375..1302652,1302691..1302980)) 2 1 NC_011099.1 all_bases.C.cand.292 - hypothetical protein, conserved, pf10_0204; uncharacterized protein 1302980 3861714 TA12595 Theileria annulata uncharacterized protein XP_952385.1 1301633 R 5874 CDS TA12590 3861713 complement(join(1303261..1303556,1303587..1303626,1303660..1303797,1303828..1303877,1303908..1304000,1304030..1304135,1304166..1304221,1304254..1304388,1304418..1304610,1304663..1304818)) 2 1 NC_011099.1 all_bases.C.cand.291 - apurinic/apyrimidinic endonuclease Apn1; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA12590 by SignalP 2.0 HMM (Signal peptide probability 0.937, signal anchor probability 0.027) with cleavage site probability 0.654 between residues 21 and 22; apurinic/apyrimidinic endonuclease Apn1-like, putative 1304818 3861713 TA12590 Theileria annulata apurinic/apyrimidinic endonuclease Apn1-like, putative XP_952386.1 1303261 R 5874 CDS TA12585 3861712 complement(join(1304896..1305059,1305091..1305483,1305526..1305708,1305740..1305749)) 2 1 NC_011099.1 all_bases.C.cand.291 - translation initiation factor 6; eukaryotic translation initiation factor 6, putative 1305749 3861712 TA12585 Theileria annulata eukaryotic translation initiation factor 6, putative XP_952387.1 1304896 R 5874 CDS TA12575 3861710 join(1305952..1306887,1306921..1307418) 2 1 NC_011099.1 chr2.C.cand.335 - DEAD box RNA helicase; ATP-dependent RNA helicase, putative 1307418 3861710 TA12575 Theileria annulata ATP-dependent RNA helicase, putative XP_952388.1 1305952 D 5874 CDS TA12570 3861709 join(1307563..1308838,1308870..1309475,1309521..1311040) 2 1 NC_011099.1 all_bases.cand.1521 - Ubiquitin-activating enzyme (E1 enzyme), PF00899 ThiF family, PF02134 Repeat in ubiquitin-activating (UBA) protein; ubiquitin-activating enzyme, putative 1311040 3861709 TA12570 Theileria annulata ubiquitin-activating enzyme, putative XP_952389.1 1307563 D 5874 CDS TA12565 3861708 complement(1311097..1311738) 2 1 NC_011099.1 chr2.cand.174 - cargo receptor, signal peptide, PF01105 emp24/gp25L/p24 family; 1 probable transmembrane helix predicted for TA12565 by TMHMM2.0 at aa 181-203; cargo protein (transmembrane protein tmp21 homologue), putative 1311738 3861708 TA12565 Theileria annulata cargo protein (transmembrane protein tmp21 homologue), putative XP_952390.1 1311097 R 5874 CDS TA12560 3861707 join(1312080..1313778,1313842..1314311) 2 1 NC_011099.1 chr2.C.cand.337 - hypothetical protein; uncharacterized protein 1314311 3861707 TA12560 Theileria annulata uncharacterized protein XP_952391.1 1312080 D 5874 CDS TA12555 3861706 1314405..1315580 2 1 NC_011099.1 chr2.C.cand.338 - hypothetical protein, bromodomain; histone acetyltransferase, GCN5-like, putative 1315580 3861706 TA12555 Theileria annulata histone acetyltransferase, GCN5-like, putative XP_952392.1 1314405 D 5874 CDS TA12550 3861705 complement(join(1315718..1315852,1315885..1316609,1316641..1316740,1316851..1317097,1317129..1317722,1317819..1319799,1319831..1320133,1320223..1320310,1320346..1320608,1320647..1320725,1320754..1320827,1320857..1321073)) 2 1 NC_011099.1 all_bases.C.cand.289 - hypothetical protein, conserved, pf14_0723, signal peptide; uncharacterized protein 1321073 3861705 TA12550 Theileria annulata uncharacterized protein XP_952393.1 1315718 R 5874 CDS TA12545 3861704 complement(join(1321185..1321248,1321280..1321334,1321366..1321427,1321459..1321571,1321602..1321667,1321695..1321811,1321841..1321921,1321953..1322099,1322130..1322210,1322252..1322326,1322356..1322499,1322536..1322567,1322601..1322634,1322672..1322785)) 2 1 NC_011099.1 chr2.cand.169 - partially conserved hypothetical protein; uncharacterized protein 1322785 3861704 TA12545 Theileria annulata uncharacterized protein XP_952394.1 1321185 R 5874 CDS TA12540 3861703 join(1322865..1323415,1323468..1323658,1323688..1323749,1323778..1323831) 2 1 NC_011099.1 chr2.C.cand.339 - syntaxin family, Syntaxin motif; 1 probable transmembrane helix predicted for TA12540 by TMHMM2.0 at aa 264-283; syntaxin 5, putative 1323831 3861703 TA12540 Theileria annulata syntaxin 5, putative XP_952395.1 1322865 D 5874 CDS TA12535 3861702 complement(join(1323975..1324268,1324298..1324413,1324447..1324456)) 2 1 NC_011099.1 chr2.cand.168 - 60S ribosomal protein l23; 60S ribosomal protein L23, putative 1324456 3861702 TA12535 Theileria annulata 60S ribosomal protein L23, putative XP_952396.1 1323975 R 5874 CDS TA12530 3861701 join(1325001..1325923,1325953..1326135,1326166..1326298,1326330..1326458,1326544..1326937,1327199..1327393,1327423..1327647,1327678..1327898) 2 1 NC_011099.1 possible signal peptide present; all_bases.cand.1525 - PF00749 tRNA synthetases class I (E and Q), catalytic domain; 2 probable transmembrane helices predicted for TA12530 by TMHMM2.0 at aa 588-610 and 630-652; glutaminyl-trna synthetase, putative 1327898 3861701 TA12530 Theileria annulata glutaminyl-trna synthetase, putative XP_952397.1 1325001 D 5874 CDS TA12520 3861699 complement(join(1328016..1329461,1329501..1329776)) 2 1 NC_011099.1 chr2.cand.167 - hypothetical protein; uncharacterized protein 1329776 3861699 TA12520 Theileria annulata uncharacterized protein XP_952398.1 1328016 R 5874 CDS TA12515 3861698 complement(join(1329999..1330373,1330405..1330538,1330651..1330841,1330898..1331772)) 2 1 NC_011099.1 S/T protein kinase; cyclin-dependent protein kinase, PHO85 homologue, putative 1331772 3861698 TA12515 Theileria annulata cyclin-dependent protein kinase, PHO85 homologue, putative XP_952399.1 1329999 R 5874 CDS TA12510 3862333 join(1332060..1332115,1332151..1332233,1332277..1332388,1332428..1332660,1332695..1332804,1332838..1332873,1332980..1332994) 2 1 NC_011099.1 chr2.C.cand.342 - thymidylate kinase; thymidylate kinase, putative 1332994 3862333 TA12510 Theileria annulata thymidylate kinase, putative XP_952400.1 1332060 D 5874 CDS TA12505 3862332 1333219..1335255 2 1 NC_011099.1 chr2.C.cand.343 - hypothetical protein, some similarity to S. pombe nucleoporin; uncharacterized protein 1335255 3862332 TA12505 Theileria annulata uncharacterized protein XP_952401.1 1333219 D 5874 CDS TA12500 3862331 complement(join(1336173..1336451,1336482..1336646)) 2 1 NC_011099.1 chr2.cand.161 - 60S ribosomal protein l27a; 60S ribosomal protein L27a, putative 1336646 3862331 TA12500 Theileria annulata 60S ribosomal protein L27a, putative XP_952402.1 1336173 R 5874 CDS TA12495 3862330 complement(join(1336987..1337096,1337115..1337142,1337185..1337297,1337337..1337881,1337957..1338317,1338347..1338677,1338715..1339089)) 2 1 NC_011099.1 2 probable transmembrane helices predicted for TA12495 by TMHMM2.0; RNA helicase, putative 1339089 3862330 TA12495 Theileria annulata RNA helicase, putative XP_952403.1 1336987 R 5874 CDS TA12490 3862329 join(1339151..1339344,1339377..1339494,1339534..1339740) 2 1 NC_011099.1 chr2.C.cand.344 - hypothetical protein; uncharacterized protein 1339740 3862329 TA12490 Theileria annulata uncharacterized protein XP_952404.1 1339151 D 5874 CDS TA12485 3862328 complement(join(1339876..1340014,1340048..1340148,1340178..1340264,1340328..1340390,1340422..1340535,1340566..1340685,1340751..1340859,1340891..1341855)) 2 1 NC_011099.1 all_bases.C.cand.282 - hypothetical protein, possible signal peptide; uncharacterized protein 1341855 3862328 TA12485 Theileria annulata uncharacterized protein XP_952405.1 1339876 R 5874 CDS TA12480 3862327 1342442..1344520 2 1 NC_011099.1 chr2.C.cand.345 - hypothetical protein, partly conserved; uncharacterized protein 1344520 3862327 TA12480 Theileria annulata uncharacterized protein XP_952406.1 1342442 D 5874 CDS TA12475 3862326 1344663..1345187 2 1 NC_011099.1 chr2.C.cand.346 - conserved hypothetical protein, some similarity to human mbp-1 interacting protein-2a; endoplasmic reticulum transport protein, putative 1345187 3862326 TA12475 Theileria annulata endoplasmic reticulum transport protein, putative XP_952407.1 1344663 D 5874 CDS TA12470 3862325 complement(join(1345321..1345701,1345740..1345844,1345888..1345969,1346000..1346250,1346280..1346347,1346380..1346559,1346596..1346665,1346759..1346913,1346966..1347086,1347118..1347303)) 2 1 NC_011099.1 chr2.cand.156 - PF01909 Nucleotidyltransferase domain; topoisomerase-related nucleotidyltransferase, putative 1347303 3862325 TA12470 Theileria annulata topoisomerase-related nucleotidyltransferase, putative XP_952408.1 1345321 R 5874 CDS TA12465 3862324 complement(join(1347419..1347450,1347491..1347693,1347734..1347858,1347892..1347961,1348095..1348127,1348158..1348222,1348310..1348455,1348513..1348705)) 2 1 NC_011099.1 chr2.cand.156 - chaperonin, 2 x cpn10, signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA12465 by SignalP 2.0 HMM (Signal peptide probability 0.909, signal anchor probability 0.000) with cleavage site probability 0.843 between residues 16 and 17; chaperonin, putative 1348705 3862324 TA12465 Theileria annulata chaperonin, putative XP_952409.1 1347419 R 5874 CDS TA12460 3862323 join(1348814..1349006,1349048..1349229,1349337..1349503,1349554..1349823,1349903..1350319,1350388..1350806,1350883..1351642,1351734..1352715) 2 1 NC_011099.1 chr2.C.cand.347 - isoleucyl-trna synthetase; isoleucyl-tRNA synthetase, putative 1352715 3862323 TA12460 Theileria annulata isoleucyl-tRNA synthetase, putative XP_952410.1 1348814 D 5874 CDS TA12455 3862322 complement(join(1352848..1354632,1354669..1354824)) 2 1 NC_011099.1 chr2.cand.155 - hypothetical protein; uncharacterized protein 1354824 3862322 TA12455 Theileria annulata uncharacterized protein XP_952411.1 1352848 R 5874 CDS TA12450 3862321 complement(join(1355335..1355594,1355634..1356378)) 2 1 NC_011099.1 chr2.cand.154 - hypothetical protein; uncharacterized protein 1356378 3862321 TA12450 Theileria annulata uncharacterized protein XP_952412.1 1355335 R 5874 CDS TA12445 3862320 1358536..1359639 2 1 NC_011099.1 chr2.C.cand.348 - PF01398 Mov34/MPN/PAD-1 family; eukaryotic translation initiation factor 3, putative 1359639 3862320 TA12445 Theileria annulata eukaryotic translation initiation factor 3, putative XP_952413.1 1358536 D 5874 CDS TA12440 3862319 1360106..1362496 2 1 NC_011099.1 chr2.C.cand.349 - hypothetical protein; uncharacterized protein 1362496 3862319 TA12440 Theileria annulata uncharacterized protein XP_952414.1 1360106 D 5874 CDS TA12435 3862318 join(1362865..1362988,1363022..1363224) 2 1 NC_011099.1 chr2.C.cand.350 - 60S ribosomal protein l30; 60S ribosomal protein L30, putative 1363224 3862318 TA12435 Theileria annulata 60S ribosomal protein L30, putative XP_952415.1 1362865 D 5874 CDS TA12430 3862317 join(1363547..1363851,1363968..1364107,1364187..1366366) 2 1 NC_011099.1 chr2.C.cand.351 - beta adaptin PF01602 Adaptin N terminal region; beta adaptin, putative 1366366 3862317 TA12430 Theileria annulata beta adaptin, putative XP_952416.1 1363547 D 5874 CDS TA12425 3862316 complement(1366491..1367225) 2 1 NC_011099.1 chr2.cand.152 - initiation factor 3 subunit 11; eukaryotic translation initiation factor 3 subunit II, putative 1367225 3862316 TA12425 Theileria annulata eukaryotic translation initiation factor 3 subunit II, putative XP_952417.1 1366491 R 5874 CDS TA12415 3862314 join(1367457..1367738,1367813..1368030,1368103..1368347,1368463..1368653,1368686..1369840) 2 1 NC_011099.1 chr2.C.cand.352 - conserved hypothetical protein; uncharacterized protein 1369840 3862314 TA12415 Theileria annulata uncharacterized protein XP_952418.1 1367457 D 5874 CDS TA12410 3862450 join(1370211..1370616,1370731..1370837,1370867..1370974) 2 1 NC_011099.1 all_bases.cand.1537 - pfcg8-like protein; 1 probable transmembrane helix predicted for TA12410 by TMHMM2.0 at aa 113-135; uncharacterized protein 1370974 3862450 TA12410 Theileria annulata uncharacterized protein XP_952419.1 1370211 D 5874 CDS TA12405 3862449 complement(join(1371386..1372026,1372088..1372889)) 2 1 NC_011099.1 chr2.cand.151 - hypothetical protein, conserved; uncharacterized protein 1372889 3862449 TA12405 Theileria annulata uncharacterized protein XP_952420.1 1371386 R 5874 CDS TA12400 3862448 complement(join(1373305..1373483,1373632..1373714,1373773..1373984)) 2 1 NC_011099.1 chr2.cand.150 - score = 9.38; uncharacterized protein 1373984 3862448 TA12400 Theileria annulata uncharacterized protein XP_952421.1 1373305 R 5874 CDS TA12395 3862447 join(1374178..1374264,1374324..1374556,1374649..1375069,1375085..1375265,1375317..1375412,1375445..1375547,1375590..1375640,1375657..1375729,1375880..1376131,1376162..1376334,1376366..1376399) 2 1 NC_011099.1 chr2.C.cand.354 - score = 8.71; uncharacterized protein 1376399 3862447 TA12395 Theileria annulata uncharacterized protein XP_952422.1 1374178 D 5874 CDS TA12390 3862446 complement(join(1376455..1376904,1376940..1376960)) 2 1 NC_011099.1 chr2.cand.149 - 40s ribosomal protein s11; 40S ribosomal protein S11, putative 1376960 3862446 TA12390 Theileria annulata 40S ribosomal protein S11, putative XP_952423.1 1376455 R 5874 CDS TA12385 3862445 join(1377456..1377637,1377670..1377817,1377847..1378101) 2 1 NC_011099.1 all_bases.cand.1539 - hypothetical protein, conserved, pf10_0097; uncharacterized protein 1378101 3862445 TA12385 Theileria annulata uncharacterized protein XP_952424.1 1377456 D 5874 CDS TA12380 3862444 complement(join(1378173..1378373,1378405..1378530,1378559..1378679,1378711..1378778,1378808..1379168,1379204..1379285,1379322..1379432,1379461..1379568,1379622..1379715,1379745..1379801,1379831..1379981,1380011..1380162)) 2 1 NC_011099.1 chr2.cand.148 - hypothetical protein; uncharacterized protein 1380162 3862444 TA12380 Theileria annulata uncharacterized protein XP_952425.1 1378173 R 5874 CDS TA12375 3862443 join(1380373..1380566,1380598..1380770,1380802..1381004) 2 1 NC_011099.1 all_bases.cand.1540 - hypothetical protein, conserved, pf08_0043; uncharacterized protein 1381004 3862443 TA12375 Theileria annulata uncharacterized protein XP_952426.1 1380373 D 5874 CDS TA12370 3862442 1381850..1383280 2 1 NC_011099.1 chr2.C.cand.358 - possible transporter, PF00083 Sugar (and other) transporter; 12 probable transmembrane helices predicted for TA12370 by TMHMM2.0 at aa 35-54, 100-122, 127-144, 154-176, 183-202, 217-236, 294-316, 331-350, 357-376, 380-402, 409-431 and 446-468; Signal anchor predicted for TA12370 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.704) with cleavage site probability 0.001 between residues 54 and 55; uncharacterized protein 1383280 3862442 TA12370 Theileria annulata uncharacterized protein XP_952427.1 1381850 D 5874 CDS TA12360 3862440 join(1383357..1383953,1384034..1384523,1384552..1384658,1384698..1384828,1384870..1385003,1385058..1385155,1385187..1385423,1385456..1385520,1385553..1385700) 2 1 NC_011099.1 all_bases.cand.1542 - rna helicase; ATP-dependent helicase, putative 1385700 3862440 TA12360 Theileria annulata ATP-dependent helicase, putative XP_952428.1 1383357 D 5874 CDS TA12355 3862439 join(1385900..1385922,1385961..1386069,1386111..1386161,1386193..1386323,1386361..1386391) 2 1 NC_011099.1 chr2.C.cand.360 - conserved hypothetical protein; uncharacterized protein 1386391 3862439 TA12355 Theileria annulata uncharacterized protein XP_952429.1 1385900 D 5874 CDS TA12350 3862438 join(1386605..1387007,1387049..1387195,1387225..1387400) 2 1 NC_011099.1 chr2.C.cand.362 - sec22 vesicle trafficking protein-like 1, synaptobrevin motif; 1 probable transmembrane helix predicted for TA12350 by TMHMM2.0 at aa 215-234; vesicle trafficking protein-like 1, SEC22 homologue, putative 1387400 3862438 TA12350 Theileria annulata vesicle trafficking protein-like 1, SEC22 homologue, putative XP_952430.1 1386605 D 5874 CDS TA12345 3862437 join(1387678..1387908,1387974..1388221,1388285..1388420,1388487..1388627,1388693..1388818,1388852..1389080,1389152..1389651) 2 1 NC_011099.1 chr2.C.cand.363 - t-complex protein 1 epsilon subunit, putative; T-complex protein 1 epsilon subunit, putative 1389651 3862437 TA12345 Theileria annulata T-complex protein 1 epsilon subunit, putative XP_952431.1 1387678 D 5874 CDS TA12340 3862436 complement(join(1389816..1389974,1390004..1390092,1390125..1390365)) 2 1 NC_011099.1 all_bases.C.cand.270 - ubiquitin-conjugating enzyme e2; ubiquitin-conjugating enzyme E2, putative 1390365 3862436 TA12340 Theileria annulata ubiquitin-conjugating enzyme E2, putative XP_952432.1 1389816 R 5874 CDS TA12335 3862435 join(1390598..1390851,1390921..1392136,1392171..1392489,1392543..1392769,1392848..1392955) 2 1 NC_011099.1 chr2.C.cand.364 - PF03372 Endonuclease/Exonuclease/phosphatase family; uncharacterized protein 1392955 3862435 TA12335 Theileria annulata uncharacterized protein XP_952433.1 1390598 D 5874 CDS TA12330 3862434 join(1393139..1393163,1393215..1395076) 2 1 NC_011099.1 chr2.C.cand.365 - DEAD box RNA helicase; RNA helicase, putative 1395076 3862434 TA12330 Theileria annulata RNA helicase, putative XP_952434.1 1393139 D 5874 CDS TA12325 3862433 join(1395294..1395662,1395702..1395815,1395845..1395953,1396026..1396836,1396903..1397157,1397218..1397443) 2 1 NC_011099.1 all_bases.cand.1546 - hypothetical protein, partly conserved, pfc0970w, transmembrane domains; 5 probable transmembrane helices predicted for TA12325 by TMHMM2.0 at aa 156-178, 377-399, 473-490, 555-577 and 581-603; uncharacterized protein 1397443 3862433 TA12325 Theileria annulata uncharacterized protein XP_952435.1 1395294 D 5874 CDS TA12320 3862432 complement(1397532..1399706) 2 1 NC_011099.1 chr2.cand.144 - hypothetical protein; uncharacterized protein 1399706 3862432 TA12320 Theileria annulata uncharacterized protein XP_952436.1 1397532 R 5874 CDS TA12315 3862067 complement(join(1399841..1400012,1400048..1400263,1400299..1400321,1400355..1400372)) 2 1 NC_011099.1 chr2.cand.143 - hypothetical protein; uncharacterized protein 1400372 3862067 TA12315 Theileria annulata uncharacterized protein XP_952437.1 1399841 R 5874 CDS TA12295 3862064 join(1402469..1403093,1403150..1403427,1403477..1403611,1403678..1403769,1403802..1403907,1403963..1404145) 2 1 NC_011099.1 chr2.C.cand.367 - DnaJ, signal peptide, apicoplast targetting sequence; chaperone protein DnaJ, putative 1404145 3862064 TA12295 Theileria annulata chaperone protein DnaJ, putative XP_952438.1 1402469 D 5874 CDS TA12290 3862063 join(1404340..1404433,1404499..1404569,1404599..1404709,1404742..1404782,1404823..1405585,1405617..1405979) 2 1 NC_011099.1 chr2.C.cand.368 - hypothetical protein; uncharacterized protein 1405979 3862063 TA12290 Theileria annulata uncharacterized protein XP_952439.1 1404340 D 5874 CDS TA12285 3862062 join(1406340..1406637,1406669..1407235,1407299..1411016,1411088..1411851,1411937..1412763) 2 1 NC_011099.1 chr2.C.cand.369 - hypothetical protein; uncharacterized protein 1412763 3862062 TA12285 Theileria annulata uncharacterized protein XP_952440.1 1406340 D 5874 CDS TA12280 3862061 join(1412906..1413119,1413213..1413502,1413546..1413644,1413693..1413789,1413849..1413946,1414031..1414102,1414134..1414235,1414291..1414414,1414504..1414731,1414775..1414825,1414857..1414907,1414992..1415176,1415209..1415316,1415376..1415454,1415487..1415572) 2 1 NC_011099.1 chr2.C.cand.370 - hypothetical protein, conserved, pfl1655C; uncharacterized protein 1415572 3862061 TA12280 Theileria annulata uncharacterized protein XP_952441.1 1412906 D 5874 CDS TA12275 3862060 join(1415720..1415875,1415912..1417690) 2 1 NC_011099.1 chr2.C.cand.370 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative 1417690 3862060 TA12275 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952442.1 1415720 D 5874 CDS TA12270 3862059 1418755..1419795 2 1 NC_011099.1 chr2.C.cand.371 - hypothetical protein; uncharacterized protein 1419795 3862059 TA12270 Theileria annulata uncharacterized protein XP_952443.1 1418755 D 5874 CDS TA12265 3862058 join(1420308..1420463,1420500..1422278) 2 1 NC_011099.1 chr2.C.cand.372 - hypothetical protein; SfiI-subtelomeric fragment related protein family member, putative 1422278 3862058 TA12265 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952444.1 1420308 D 5874 CDS TA12260 3862057 1423449..1424489 2 1 NC_011099.1 chr2.C.cand.373 - hypothetical protein; uncharacterized protein 1424489 3862057 TA12260 Theileria annulata uncharacterized protein XP_952445.1 1423449 D 5874 CDS TA12255 3862056 complement(join(1425113..1425521,1425561..1425769)) 2 1 NC_011099.1 chr2.cand.142 - hypothetical protein; uncharacterized protein 1425769 3862056 TA12255 Theileria annulata uncharacterized protein XP_952446.1 1425113 R 5874 CDS TA12245 3862054 complement(join(1425883..1426005,1426078..1426188,1426228..1426347)) 2 1 NC_011099.1 chr2.cand.141 - hypothetical protein; 1 probable transmembrane helix predicted for TA12245 by TMHMM2.0 at aa 9-31; uncharacterized protein 1426347 3862054 TA12245 Theileria annulata uncharacterized protein XP_952447.1 1425883 R 5874 CDS TA12240 3862053 join(1426558..1426864,1426971..1427350) 2 1 NC_011099.1 chr2.C.cand.374 - hypothetical protein, low similarity to 50S ribosomal S9; uncharacterized protein 1427350 3862053 TA12240 Theileria annulata uncharacterized protein XP_952448.1 1426558 D 5874 CDS TA12235 3862052 complement(join(1427517..1427903,1427957..1428095,1428128..1428256,1428344..1428414,1428445..1428570,1428599..1428706,1428763..1428887,1428938..1429075,1429106..1429201,1429288..1429435,1429509..1429964)) 2 1 NC_011099.1 all_bases.C.cand.267 - WD repeat protein; WD repeat protein, putative; uncharacterized protein 1429964 3862052 TA12235 Theileria annulata uncharacterized protein XP_952449.1 1427517 R 5874 CDS TA12230 3862051 join(1430318..1430695,1430757..1430955,1430999..1431147,1431195..1431371,1431450..1431995,1432100..1432468) 2 1 NC_011099.1 chr2.C.cand.375 - anthranilate synthase, PF00218 Indole-3-glycerol phosphate synthase; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA12230 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA12230 by SignalP 2.0 HMM (Signal peptide probability 0.054, signal anchor probability 0.606) with cleavage site probability 0.014 between residues 32 and 33; anthranilate synthase component II, putative 1432468 3862051 TA12230 Theileria annulata anthranilate synthase component II, putative XP_952450.1 1430318 D 5874 CDS TA12225 3862050 join(1432566..1433251,1433294..1433885) 2 1 NC_011099.1 chr2.C.cand.376 - hypothetical protein, signal peptide, transmembrane domain; 1 probable transmembrane helix predicted for TA12225 by TMHMM2.0 at aa 392-414; Signal peptide predicted for TA12225 by SignalP 2.0 HMM (Signal peptide probability 0.945, signal anchor probability 0.000) with cleavage site probability 0.733 between residues 21 and 22; uncharacterized protein 1433885 3862050 TA12225 Theileria annulata uncharacterized protein XP_952451.1 1432566 D 5874 CDS TA12220 3862049 join(1434384..1435587,1435653..1435972,1436057..1436665,1436742..1437016,1437082..1437904) 2 1 NC_011099.1 chr2.C.cand.377 - conserved hypothetical protein, transmembrane domains; 4 probable transmembrane helices predicted for TA12220 by TMHMM2.0 at aa 210-228, 245-262, 272-291 and 304-326; uncharacterized protein 1437904 3862049 TA12220 Theileria annulata uncharacterized protein XP_952452.1 1434384 D 5874 CDS TA12215 3862048 join(1438089..1438302,1438332..1438376,1438457..1438713) 2 1 NC_011099.1 all_bases.cand.1558 - conserved hypothetical protein, transmembrane domain; 1 probable transmembrane helix predicted for TA12215 by TMHMM2.0 at aa 48-67; Signal anchor predicted for TA12215 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.961) with cleavage site probability 0.000 between residues 62 and 63; uncharacterized protein 1438713 3862048 TA12215 Theileria annulata uncharacterized protein XP_952453.1 1438089 D 5874 CDS TA12210 3861947 complement(1438783..1439463) 2 1 NC_011099.1 chr2.cand.137 - RNA binding protein, PF00076 RNA recognition motif; RNA binding protein, putative 1439463 3861947 TA12210 Theileria annulata RNA binding protein, putative XP_952454.1 1438783 R 5874 CDS TA12205 3861946 join(1439836..1439904,1439942..1439986,1440016..1440684) 2 1 NC_011099.1 uncharacterized protein 1440684 3861946 TA12205 Theileria annulata uncharacterized protein XP_952455.1 1439836 D 5874 CDS TA12200 3861945 join(1440792..1441113,1441174..1443668) 2 1 NC_011099.1 uncharacterized protein 1443668 3861945 TA12200 Theileria annulata uncharacterized protein XP_952456.1 1440792 D 5874 CDS TA12190 3861943 complement(1443719..1445194) 2 1 NC_011099.1 DNA binding protein PF02891 MIZ zinc finger; hypothetical protein, putative 1445194 3861943 TA12190 Theileria annulata hypothetical protein, putative XP_952457.1 1443719 R 5874 CDS TA12185 3861942 1445631..1449176 2 1 NC_011099.1 Signal anchor predicted for TA12185 by SignalP 2.0 HMM (Signal peptide probability 0.266, signal anchor probability 0.617) with cleavage site probability 0.214 between residues 29 and 30; falcilysin, putative 1449176 3861942 TA12185 Theileria annulata falcilysin, putative XP_952458.1 1445631 D 5874 CDS TA12180 3861941 join(1449247..1449625,1449707..1449925,1449956..1450112,1450142..1450279,1450312..1450441,1450472..1450599,1450629..1450729,1450766..1450903,1450933..1451177,1451206..1451312,1451342..1451447,1451479..1451635,1451667..1451822,1451851..1452105,1452134..1452302,1452332..1452483,1452514..1453196) 2 1 NC_011099.1 7 probable transmembrane helices predicted for TA12180 by TMHMM2.0 at aa 12-34, 44-66, 227-249, 271-293, 300-322, 370-392 and 427-449; ion transport protein, putative 1453196 3861941 TA12180 Theileria annulata ion transport protein, putative XP_952459.1 1449247 D 5874 CDS TA12175 3861940 1453503..1456862 2 1 NC_011099.1 falcilysin-related protein, putative 1456862 3861940 TA12175 Theileria annulata falcilysin-related protein, putative XP_952460.1 1453503 D 5874 CDS TA12170 3861939 complement(join(1456876..1456984,1457114..1457177,1457212..1457243,1457337..1457443,1457536..1457598)) 2 1 NC_011099.1 uncharacterized protein 1457598 3861939 TA12170 Theileria annulata uncharacterized protein XP_952461.1 1456876 R 5874 CDS TA12165 3861938 join(1457977..1458337,1458430..1458505,1458542..1458677) 2 1 NC_011099.1 Possible signal peptide present; 1 probable transmembrane helix predicted for TA12165 by TMHMM2.0 at aa 123-145; Signal peptide predicted for TA12165 by SignalP 2.0 HMM (Signal peptide probability 0.728, signal anchor probability 0.186) with cleavage site probability 0.677 between residues 25 and 26; uncharacterized protein 1458677 3861938 TA12165 Theileria annulata uncharacterized protein XP_952462.1 1457977 D 5874 CDS TA12160 3861937 join(1458801..1458873,1458903..1459204,1459239..1459283) 2 1 NC_011099.1 uncharacterized protein 1459283 3861937 TA12160 Theileria annulata uncharacterized protein XP_952463.1 1458801 D 5874 CDS TA12155 3861936 complement(join(1459306..1459345,1459376..1459528,1459561..1459702,1459745..1459874)) 2 1 NC_011099.1 ATP synthase delta chain, mitochondrial, PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase delta chain, mitochondrial 1459874 3861936 TA12155 Theileria annulata ATP synthase delta chain, mitochondrial XP_952464.1 1459306 R 5874 CDS TA12150 3861935 join(1460129..1460160,1460196..1460291,1460328..1460440,1460599..1460767,1460833..1460850,1460882..1460951,1460982..1461059,1461089..1461149,1461182..1461351) 2 1 NC_011099.1 uncharacterized protein 1461351 3861935 TA12150 Theileria annulata uncharacterized protein XP_952465.1 1460129 D 5874 CDS TA12145 3861934 join(1461612..1461977,1462009..1464129,1464159..1464333,1464364..1464485) 2 1 NC_011099.1 uncharacterized protein 1464485 3861934 TA12145 Theileria annulata uncharacterized protein XP_952466.1 1461612 D 5874 CDS TA12135 3861932 complement(join(1464574..1466040,1466192..1466245)) 2 1 NC_011099.1 uncharacterized protein 1466245 3861932 TA12135 Theileria annulata uncharacterized protein XP_952467.1 1464574 R 5874 CDS TA12130 3861931 complement(1466476..1467666) 2 1 NC_011099.1 uncharacterized protein 1467666 3861931 TA12130 Theileria annulata uncharacterized protein XP_952468.1 1466476 R 5874 CDS TA12125 3861930 join(1468105..1468137,1468183..1468380,1468481..1468758,1468790..1469487,1469517..1469683,1469713..1470132) 2 1 NC_011099.1 nucleolar GTP-binding protein 1, putative 1470132 3861930 TA12125 Theileria annulata nucleolar GTP-binding protein 1, putative XP_952469.1 1468105 D 5874 CDS TA12120 3861929 complement(join(1470572..1471112,1471181..1471399,1471432..1471643,1471675..1471826,1471858..1471964,1472025..1472443)) 2 1 NC_011099.1 uncharacterized protein 1472443 3861929 TA12120 Theileria annulata uncharacterized protein XP_952470.1 1470572 R 5874 CDS TA12115 3862047 complement(1472820..1473665) 2 1 NC_011099.1 uncharacterized protein 1473665 3862047 TA12115 Theileria annulata uncharacterized protein XP_952471.1 1472820 R 5874 CDS TA12110 3862046 complement(join(1473682..1473769,1473814..1474052,1474116..1474334)) 2 1 NC_011099.1 adp-ribosylation factor, putative 1474334 3862046 TA12110 Theileria annulata adp-ribosylation factor, putative XP_952472.1 1473682 R 5874 CDS TA12105 3862045 complement(join(1474807..1475112,1475289..1475789,1476009..1477300,1477521..1477590)) 2 1 NC_011099.1 heat shock protein 90, putative 1477590 3862045 TA12105 Theileria annulata heat shock protein 90, putative XP_952473.1 1474807 R 5874 CDS TA12100 3862044 join(1478723..1478829,1478983..1479199,1479277..1479859,1479896..1480140,1480174..1480289,1480371..1481538) 2 1 NC_011099.1 heat shock protein, putative 1481538 3862044 TA12100 Theileria annulata heat shock protein, putative XP_952474.1 1478723 D 5874 CDS TA12095 3862043 join(1481700..1481825,1481856..1481871,1481981..1482103,1482144..1482212,1482269..1482310,1482349..1482434,1482465..1482573,1482612..1482700) 2 1 NC_011099.1 Pfam hit to mitochondrion-associated cytochrome c oxidase assembly factor. PF02630 SCO1/SenC; sco1/2-like protein, putative 1482700 3862043 TA12095 Theileria annulata sco1/2-like protein, putative XP_952475.1 1481700 D 5874 CDS TA12090 3862042 complement(join(1482725..1482835,1482876..1482926,1482996..1483403,1483458..1483514)) 2 1 NC_011099.1 protein kinase, putative 1483514 3862042 TA12090 Theileria annulata protein kinase, putative XP_952476.1 1482725 R 5874 CDS TA12085 3862041 join(1483729..1483807,1483840..1483941,1483986..1484229,1484271..1484397) 2 1 NC_011099.1 uncharacterized protein 1484397 3862041 TA12085 Theileria annulata uncharacterized protein XP_952477.1 1483729 D 5874 CDS TA12080 3862040 join(1484420..1484867,1484931..1485101,1485169..1485285,1485330..1485424,1485474..1485568,1485611..1485704) 2 1 NC_011099.1 uncharacterized protein 1485704 3862040 TA12080 Theileria annulata uncharacterized protein XP_952478.1 1484420 D 5874 CDS TA12075 3862039 1485907..1488783 2 1 NC_011099.1 Signal peptide predicted for TA12075 by SignalP 2.0 HMM (Signal peptide probability 0.866, signal anchor probability 0.120) with cleavage site probability 0.390 between residues 23 and 24; uncharacterized protein 1488783 3862039 TA12075 Theileria annulata uncharacterized protein XP_952479.1 1485907 D 5874 CDS TA12070 3862038 join(1488946..1489536,1489596..1489695,1489727..1489761) 2 1 NC_011099.1 uncharacterized protein 1489761 3862038 TA12070 Theileria annulata uncharacterized protein XP_952480.1 1488946 D 5874 CDS TA12065 3862037 join(1490424..1490549,1490609..1491418,1491465..1491603,1491637..1491755,1491823..1491893,1491924..1492095,1492126..1492302) 2 1 NC_011099.1 uncharacterized protein 1492302 3862037 TA12065 Theileria annulata uncharacterized protein XP_952481.1 1490424 D 5874 CDS TA12060 3862036 join(1492552..1492672,1492854..1493008) 2 1 NC_011099.1 60S ribosomal protein l37, putative 1493008 3862036 TA12060 Theileria annulata 60S ribosomal protein l37, putative XP_952482.1 1492552 D 5874 CDS TA12055 3862035 1493055..1493579 2 1 NC_011099.1 uncharacterized protein 1493579 3862035 TA12055 Theileria annulata uncharacterized protein XP_952483.1 1493055 D 5874 CDS TA12050 3862034 join(1494004..1494080,1494125..1498393,1498455..1498526,1498560..1498887,1498993..1499106,1499174..1499644,1499797..1500483) 2 1 NC_011099.1 Contains possible signal peptide; 1 probable transmembrane helix predicted for TA12050 by TMHMM2.0 at aa 21-43; uncharacterized protein 1500483 3862034 TA12050 Theileria annulata uncharacterized protein XP_952484.1 1494004 D 5874 CDS TA12045 3862033 complement(1500672..1502366) 2 1 NC_011099.1 membrane protein, contains signal peptide; 11 probable transmembrane helices predicted for TA12045 by TMHMM2.0 at aa 21-43, 58-77, 84-106, 116-138, 145-167, 182-204, 308-330, 345-367, 380-399, 409-431 and 489-511; Signal peptide predicted for TA12045 by SignalP 2.0 HMM (Signal peptide probability 0.631, signal anchor probability 0.026) with cleavage site probability 0.309 between residues 32 and 33; membrane protein family member, putative 1502366 3862033 TA12045 Theileria annulata membrane protein family member, putative XP_952485.1 1500672 R 5874 CDS TA12040 3862032 complement(join(1502964..1503364,1503459..1504235,1504321..1505349,1505420..1505600,1505643..1506329,1506525..1506632)) 2 1 NC_011099.1 uncharacterized protein 1506632 3862032 TA12040 Theileria annulata uncharacterized protein XP_952486.1 1502964 R 5874 CDS TA12030 3862030 complement(join(1506852..1506905,1506937..1507030,1507097..1507245,1507321..1507385,1507442..1507523,1507592..1507672)) 2 1 NC_011099.1 uncharacterized protein 1507672 3862030 TA12030 Theileria annulata uncharacterized protein XP_952487.1 1506852 R 5874 CDS TA12025 3862029 complement(join(1507952..1508196,1508260..1508329,1508381..1508887,1508959..1509075)) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA12025 by TMHMM2.0 at aa 287-309; syntaxin-like, putative 1509075 3862029 TA12025 Theileria annulata syntaxin-like, putative XP_952488.1 1507952 R 5874 CDS TA12020 3862028 join(1509700..1509876,1509908..1509975,1510064..1510433,1510484..1510547,1510589..1510690,1510727..1510782,1510812..1510888,1510941..1510983) 2 1 NC_011099.1 Contains possible signal sequence; hypothetical protein with WD40 domain, putative 1510983 3862028 TA12020 Theileria annulata hypothetical protein with WD40 domain, putative XP_952489.1 1509700 D 5874 CDS TA12015 3861987 complement(join(1511139..1511260,1511410..1512142)) 2 1 NC_011099.1 uncharacterized protein 1512142 3861987 TA12015 Theileria annulata uncharacterized protein XP_952490.1 1511139 R 5874 CDS TA12010 3861986 complement(join(1512565..1513080,1513163..1513359,1513456..1513555,1513630..1513806,1513993..1514292)) 2 1 NC_011099.1 uncharacterized protein 1514292 3861986 TA12010 Theileria annulata uncharacterized protein XP_952491.1 1512565 R 5874 CDS TA12005 3861985 1514969..1516261 2 1 NC_011099.1 8 probable transmembrane helices predicted for TA12005 by TMHMM2.0 at aa 52-74, 89-111, 118-137, 147-169, 240-262, 307-329, 336-358 and 363-385; Signal anchor predicted for TA12005 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.768) with cleavage site probability 0.001 between residues 21 and 22; transporter protein cg10, putative 1516261 3861985 TA12005 Theileria annulata transporter protein cg10, putative XP_952492.1 1514969 D 5874 CDS TA12000 3861984 join(1517701..1517756,1517834..1517933,1518005..1518013) 2 1 NC_011099.1 ribosomal protein s29, putative 1518013 3861984 TA12000 Theileria annulata ribosomal protein s29, putative XP_952493.1 1517701 D 5874 CDS TA11995 3861983 complement(1518086..1519777) 2 1 NC_011099.1 DnaJ protein, putative 1519777 3861983 TA11995 Theileria annulata DnaJ protein, putative XP_952494.1 1518086 R 5874 CDS TA11990 3861982 join(1520654..1520824,1520916..1521146) 2 1 NC_011099.1 uncharacterized protein 1521146 3861982 TA11990 Theileria annulata uncharacterized protein XP_952495.1 1520654 D 5874 CDS TA11985 3861981 complement(join(1521220..1522620,1522663..1523614,1523671..1523780)) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA11985 by TMHMM2.0 at aa 713-735; uncharacterized protein 1523780 3861981 TA11985 Theileria annulata uncharacterized protein XP_952496.1 1521220 R 5874 CDS TA11975 3861979 join(1523935..1523997,1524114..1524630,1524715..1525047,1525120..1525784) 2 1 NC_011099.1 mitochondrial processing peptidase alpha subunit PF00675 Insulinase (Peptidase family M16); mitochondrial processing peptidase alpha subunit, putative 1525784 3861979 TA11975 Theileria annulata mitochondrial processing peptidase alpha subunit, putative XP_952497.1 1523935 D 5874 CDS TA11970 3861978 complement(join(1525919..1526148,1526241..1526457)) 2 1 NC_011099.1 g10 protein, putative 1526457 3861978 TA11970 Theileria annulata g10 protein, putative XP_952498.1 1525919 R 5874 CDS TA11965 3861977 1527227..1530538 2 1 NC_011099.1 Contains putative signal peptide, P-,Q-rich family 2, PF02178 AT hook motif; Signal peptide predicted for TA11965 by SignalP 2.0 HMM (Signal peptide probability 0.945, signal anchor probability 0.000) with cleavage site probability 0.863 between residues 22 and 23; putative P-,Q-rich family protein, putative 1530538 3861977 TA11965 Theileria annulata putative P-,Q-rich family protein, putative XP_952499.1 1527227 D 5874 CDS TA11960 3861976 1531611..1534541 2 1 NC_011099.1 Contains possible signal peptide; 1 probable transmembrane helix predicted for TA11960 by TMHMM2.0 at aa 7-29; putative P-,Q-rich family protein, putative 1534541 3861976 TA11960 Theileria annulata putative P-,Q-rich family protein, putative XP_952500.1 1531611 D 5874 CDS TA11955 3861975 1535410..1539249 2 1 NC_011099.1 Contains possible signal peptide, P-, Q-rich family; 1 probable transmembrane helix predicted for TA11955 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA11955 by SignalP 2.0 HMM (Signal peptide probability 0.718, signal anchor probability 0.225) with cleavage site probability 0.402 between residues 18 and 19; hypothetical protein P-, Q-rich family protein, putative 1539249 3861975 TA11955 Theileria annulata hypothetical protein P-, Q-rich family protein, putative XP_952501.1 1535410 D 5874 CDS TA11950 3861974 1540144..1544022 2 1 NC_011099.1 Contains putative signal peptide; 1 probable transmembrane helix predicted for TA11950 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA11950 by SignalP 2.0 HMM (Signal peptide probability 0.602, signal anchor probability 0.000) with cleavage site probability 0.356 between residues 23 and 24; putative P-, Q-rich protein family protein, putative 1544022 3861974 TA11950 Theileria annulata putative P-, Q-rich protein family protein, putative XP_952502.1 1540144 D 5874 CDS TA11945 3861973 1545190..1545984 2 1 NC_011099.1 uncharacterized protein 1545984 3861973 TA11945 Theileria annulata uncharacterized protein XP_952503.1 1545190 D 5874 CDS TA11940 3861972 1546201..1546989 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA11940 by TMHMM2.0 at aa 7-29; uncharacterized protein 1546989 3861972 TA11940 Theileria annulata uncharacterized protein XP_952504.1 1546201 D 5874 CDS TA11935 3861971 1547350..1548102 2 1 NC_011099.1 Signal peptide predicted for TA11935 by SignalP 2.0 HMM (Signal peptide probability 0.839, signal anchor probability 0.000) with cleavage site probability 0.581 between residues 22 and 23; uncharacterized protein 1548102 3861971 TA11935 Theileria annulata uncharacterized protein XP_952505.1 1547350 D 5874 CDS TA11930 3861970 complement(1548364..1548663) 2 1 NC_011099.1 3 probable transmembrane helices predicted for TA11930 by TMHMM2.0 at aa 4-26, 33-55 and 75-92; uncharacterized protein 1548663 3861970 TA11930 Theileria annulata uncharacterized protein XP_952506.1 1548364 R 5874 CDS TA11915 3862411 1549046..1550107 2 1 NC_011099.1 Contains possible signal peptide; Signal peptide predicted for TA11915 by SignalP 2.0 HMM (Signal peptide probability 0.900, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 22 and 23; uncharacterized protein 1550107 3862411 TA11915 Theileria annulata uncharacterized protein XP_952507.1 1549046 D 5874 CDS TA11910 3862410 1550712..1551473 2 1 NC_011099.1 uncharacterized protein 1551473 3862410 TA11910 Theileria annulata uncharacterized protein XP_952508.1 1550712 D 5874 CDS TA11905 3862409 join(1551842..1552122,1552315..1552441) 2 1 NC_011099.1 Signal peptide predicted for TA11905 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.000) with cleavage site probability 0.468 between residues 17 and 18; uncharacterized protein 1552441 3862409 TA11905 Theileria annulata uncharacterized protein XP_952509.1 1551842 D 5874 CDS TA11900 3862408 1552730..1553491 2 1 NC_011099.1 uncharacterized protein 1553491 3862408 TA11900 Theileria annulata uncharacterized protein XP_952510.1 1552730 D 5874 CDS TA11895 3862407 complement(join(1554543..1554905,1554949..1555018,1555047..1555262,1555330..1555419,1555526..1555603,1555642..1555679)) 2 1 NC_011099.1 transcriptional regulator, putative 1555679 3862407 TA11895 Theileria annulata transcriptional regulator, putative XP_952511.1 1554543 R 5874 CDS TA11890 3862406 join(1555920..1556263,1556320..1556398,1556445..1556519,1556597..1556629) 2 1 NC_011099.1 chr2.C.cand.417 - hypothetical protein, signal peptide; 1 probable transmembrane helix predicted for TA11890 by TMHMM2.0 at aa 7-26; Signal anchor predicted for TA11890 by SignalP 2.0 HMM (Signal peptide probability 0.208, signal anchor probability 0.686) with cleavage site probability 0.089 between residues 29 and 30; uncharacterized protein 1556629 3862406 TA11890 Theileria annulata uncharacterized protein XP_952512.1 1555920 D 5874 CDS TA11885 3862405 join(1557117..1557272,1557337..1557576) 2 1 NC_011099.1 human hepatopoietin-like protein, putative; uncharacterized protein 1557576 3862405 TA11885 Theileria annulata uncharacterized protein XP_952513.1 1557117 D 5874 CDS TA11880 3862404 complement(join(1557726..1558056,1558158..1558301,1558372..1558400)) 2 1 NC_011099.1 DNA-directed RNA polymerase 2 subunit, putative 1558400 3862404 TA11880 Theileria annulata DNA-directed RNA polymerase 2 subunit, putative XP_952514.1 1557726 R 5874 CDS TA11875 3862403 complement(join(1558615..1558666,1558699..1558769,1558828..1558956,1559045..1559332)) 2 1 NC_011099.1 4 probable transmembrane helices predicted for TA11875 by TMHMM2.0 at aa 36-55, 70-92, 113-135 and 139-161; uncharacterized protein 1559332 3862403 TA11875 Theileria annulata uncharacterized protein XP_952515.1 1558615 R 5874 CDS TA11870 3862402 complement(join(1559454..1559690,1559895..1559975,1560010..1560105,1560136..1560264,1560301..1560443,1560540..1561005)) 2 1 NC_011099.1 sun-family protein, putative 1561005 3862402 TA11870 Theileria annulata sun-family protein, putative XP_952516.1 1559454 R 5874 CDS TA11865 3862401 1561252..1561809 2 1 NC_011099.1 chr2.C.cand.419 -conserved hypothetical protein; uncharacterized protein 1561809 3862401 TA11865 Theileria annulata uncharacterized protein XP_952517.1 1561252 D 5874 CDS TA11860 3862400 complement(1561868..1562893) 2 1 NC_011099.1 transcription initiation factor tfiib, putative 1562893 3862400 TA11860 Theileria annulata transcription initiation factor tfiib, putative XP_952518.1 1561868 R 5874 CDS TA11855 3862399 complement(1562978..1563418) 2 1 NC_011099.1 uncharacterized protein 1563418 3862399 TA11855 Theileria annulata uncharacterized protein XP_952519.1 1562978 R 5874 CDS TA11850 3862398 join(1563589..1563735,1563824..1563920,1563951..1564085,1564169..1564309,1564340..1564524,1564605..1564838) 2 1 NC_011099.1 proteasome regulatory subunit, putative 1564838 3862398 TA11850 Theileria annulata proteasome regulatory subunit, putative XP_952520.1 1563589 D 5874 CDS TA11845 3862397 join(1565607..1565731,1565838..1568043) 2 1 NC_011099.1 1-phosphatidylinositol-4-phosphate 5-kinase or 1-phosphatidylinositol-5-phosphate 4-kinase, putative 1568043 3862397 TA11845 Theileria annulata 1-phosphatidylinositol-4-phosphate 5-kinase or 1-phosphatidylinositol-5-phosphate 4-kinase, putative XP_952521.1 1565607 D 5874 CDS TA11840 3862396 complement(join(1568214..1570407,1570449..1570603,1570722..1570865,1571012..1571059)) 2 1 NC_011099.1 bromodomain protein, putative 1571059 3862396 TA11840 Theileria annulata bromodomain protein, putative XP_952522.1 1568214 R 5874 CDS TA11835 3862395 join(1571195..1571212,1571251..1573021,1573053..1573261,1573362..1573442,1573475..1574101,1574131..1574213,1574243..1574453) 2 1 NC_011099.1 DNA topoisomerase i, putative 1574453 3862395 TA11835 Theileria annulata DNA topoisomerase i, putative XP_952523.1 1571195 D 5874 CDS TA11830 3862394 complement(join(1574522..1574589,1574620..1574857,1574956..1575248,1575336..1575597,1575707..1575790)) 2 1 NC_011099.1 uncharacterized protein 1575790 3862394 TA11830 Theileria annulata uncharacterized protein XP_952524.1 1574522 R 5874 CDS TA11825 3862393 complement(1575830..1576759) 2 1 NC_011099.1 3-demethylubiquinone-9 3-methyltransferase-like protein, putative 1576759 3862393 TA11825 Theileria annulata 3-demethylubiquinone-9 3-methyltransferase-like protein, putative XP_952525.1 1575830 R 5874 CDS TA11820 3862431 join(1576892..1577023,1577052..1577144,1577179..1577490,1577526..1577615) 2 1 NC_011099.1 glutaredoxin-related protein, putative 1577615 3862431 TA11820 Theileria annulata glutaredoxin-related protein, putative XP_952526.1 1576892 D 5874 CDS TA11810 3862429 complement(1577699..1579066) 2 1 NC_011099.1 5 probable transmembrane helices predicted for TA11810 by TMHMM2.0 at aa 145-167, 197-219, 292-314, 324-346 and 423-445; uncharacterized protein 1579066 3862429 TA11810 Theileria annulata uncharacterized protein XP_952527.1 1577699 R 5874 CDS TA11805 3862428 join(1579945..1580342,1580388..1580566,1580635..1580881,1580974..1581296,1581373..1581574,1581666..1581795) 2 1 NC_011099.1 some similarity to erythrocyte membrane-associated antigen; 1 probable transmembrane helix predicted for TA11805 by TMHMM2.0 at aa 460-479; Signal peptide predicted for TA11805 by SignalP 2.0 HMM (Signal peptide probability 0.632, signal anchor probability 0.000) with cleavage site probability 0.540 between residues 25 and 26; erythrocyte membrane-associated malaria antigen-like 1581795 3862428 TA11805 Theileria annulata erythrocyte membrane-associated malaria antigen-like XP_952528.1 1579945 D 5874 CDS TA11800 3862427 complement(join(1581863..1581965,1581996..1582117,1582150..1582241,1582270..1582579)) 2 1 NC_011099.1 Shows weak similarity to acyl phosphatases; uncharacterized protein 1582579 3862427 TA11800 Theileria annulata uncharacterized protein XP_952529.1 1581863 R 5874 CDS TA11795 3862426 join(1582795..1582917,1582998..1583092,1583152..1583223,1583254..1584055) 2 1 NC_011099.1 serine/threonine kinase, putative 1584055 3862426 TA11795 Theileria annulata serine/threonine kinase, putative XP_952530.1 1582795 D 5874 CDS TA11790 3862425 complement(join(1584341..1584406,1584435..1584515,1584595..1584772,1584821..1584910,1585018..1585520,1585601..1585756)) 2 1 NC_011099.1 Shows some similarity to cyclins; cyclin-like protein, putative 1585756 3862425 TA11790 Theileria annulata cyclin-like protein, putative XP_952531.1 1584341 R 5874 CDS TA11785 3862424 join(1586356..1587046,1587102..1587155,1587219..1587496) 2 1 NC_011099.1 uncharacterized protein 1587496 3862424 TA11785 Theileria annulata uncharacterized protein XP_952532.1 1586356 D 5874 CDS TA11780 3862423 join(1587621..1587932,1587988..1588083,1588127..1588212,1588242..1588288,1588320..1588366,1588406..1588424,1588454..1588566) 2 1 NC_011099.1 KOW motif, signal peptide, apicoplast target sequence; 50s ribosomal subunit l24, putative 1588566 3862423 TA11780 Theileria annulata 50s ribosomal subunit l24, putative XP_952533.1 1587621 D 5874 CDS TA11775 3862422 complement(1588700..1591663) 2 1 NC_011099.1 uncharacterized protein 1591663 3862422 TA11775 Theileria annulata uncharacterized protein XP_952534.1 1588700 R 5874 CDS TA11770 3862421 complement(join(1592338..1592444,1592481..1592557,1592638..1592716,1592881..1593040,1593084..1593144,1593175..1593548)) 2 1 NC_011099.1 Contains possible signal peptide and apicoplast target sequence; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11770 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.002) with cleavage site probability 0.653 between residues 18 and 19; uncharacterized protein 1593548 3862421 TA11770 Theileria annulata uncharacterized protein XP_952535.1 1592338 R 5874 CDS TA11765 3862420 complement(join(1593799..1594103,1594136..1594236,1594303..1594436,1594487..1594545,1594611..1594814,1594844..1595080,1595153..1595336)) 2 1 NC_011099.1 uncharacterized protein 1595336 3862420 TA11765 Theileria annulata uncharacterized protein XP_952536.1 1593799 R 5874 CDS TA11755 3862418 1595825..1597987 2 1 NC_011099.1 Contains possible signal peptide; 1 probable transmembrane helix predicted for TA11755 by TMHMM2.0 at aa 7-24; Signal peptide predicted for TA11755 by SignalP 2.0 HMM (Signal peptide probability 0.676, signal anchor probability 0.305) with cleavage site probability 0.539 between residues 26 and 27; uncharacterized protein 1597987 3862418 TA11755 Theileria annulata uncharacterized protein XP_952537.1 1595825 D 5874 CDS TA11750 3862417 complement(join(1598191..1598374,1598412..1598485)) 2 1 NC_011099.1 uncharacterized protein 1598485 3862417 TA11750 Theileria annulata uncharacterized protein XP_952538.1 1598191 R 5874 CDS TA11745 3862416 join(1599740..1600532,1600564..1601275,1601331..1601492,1601524..1601757,1601835..1601975,1602006..1602095,1602125..1602253,1602339..1602519,1602551..1602679) 2 1 NC_011099.1 10 probable transmembrane helices predicted for TA11745 by TMHMM2.0 at aa 434-456, 466-488, 524-543, 558-575, 619-638, 658-675, 687-709, 719-741, 762-784 and 799-816; G-protein associated signal transduction protein, putative 1602679 3862416 TA11745 Theileria annulata G-protein associated signal transduction protein, putative XP_952539.1 1599740 D 5874 CDS TA11740 3862415 join(1603089..1603403,1603436..1604068,1604163..1604693) 2 1 NC_011099.1 3 probable transmembrane helices predicted for TA11740 by TMHMM2.0 at aa 77-99, 150-172 and 185-219; uncharacterized protein 1604693 3862415 TA11740 Theileria annulata uncharacterized protein XP_952540.1 1603089 D 5874 CDS TA11735 3862414 complement(join(1604785..1604835,1604880..1605022,1605083..1605149,1605273..1605863,1605956..1606162,1606275..1606817,1606872..1607071,1607124..1607219,1607279..1607595,1607627..1607937,1607996..1608076,1608108..1608149,1608188..1608240,1608315..1608414)) 2 1 NC_011099.1 translation initiation factor if-2, putative 1608414 3862414 TA11735 Theileria annulata translation initiation factor if-2, putative XP_952541.1 1604785 R 5874 CDS TA11730 3862413 complement(join(1608713..1608886,1608954..1609066,1609217..1609271)) 2 1 NC_011099.1 PHF5-like zinc-finger protein, putative 1609271 3862413 TA11730 Theileria annulata PHF5-like zinc-finger protein, putative XP_952542.1 1608713 R 5874 CDS TA11725 3861697 complement(join(1609352..1610165,1610195..1613199)) 2 1 NC_011099.1 uncharacterized protein 1613199 3861697 TA11725 Theileria annulata uncharacterized protein XP_952543.1 1609352 R 5874 CDS TA11720 3861696 complement(join(1613289..1614097,1614129..1614440,1614517..1615822)) 2 1 NC_011099.1 protein kinase, putative 1615822 3861696 TA11720 Theileria annulata protein kinase, putative XP_952544.1 1613289 R 5874 CDS TA11715 3861695 join(1617794..1621013,1621111..1621736) 2 1 NC_011099.1 importin-like protein, putative 1621736 3861695 TA11715 Theileria annulata importin-like protein, putative XP_952545.1 1617794 D 5874 CDS TA11710 3861694 join(1622189..1622237,1622413..1624801,1624901..1625225) 2 1 NC_011099.1 Spm2 protein 1625225 3861694 TA11710 Theileria annulata Spm2 protein XP_952546.1 1622189 D 5874 CDS TA11700 3861692 join(1625285..1625347,1625382..1625470,1625506..1625708,1625895..1626176,1626208..1626293,1626332..1626514,1626545..1626616,1626647..1626868,1626915..1627310,1627366..1627593,1627629..1627760,1627809..1627988) 2 1 NC_011099.1 N-ethylmaleimide-sensitive factor, putative 1627988 3861692 TA11700 Theileria annulata N-ethylmaleimide-sensitive factor, putative XP_952547.1 1625285 D 5874 CDS TA11695 3861691 join(1628186..1628396,1628431..1628605,1628641..1628998,1629105..1629149,1629183..1629329,1629364..1629444,1629481..1629547,1629585..1629634) 2 1 NC_011099.1 dihydroorotate dehydrogenase, mitochondrial precursor, putative 1629634 3861691 TA11695 Theileria annulata dihydroorotate dehydrogenase, mitochondrial precursor, putative XP_952548.1 1628186 D 5874 CDS TA11690 3861690 join(1629967..1630152,1630185..1630494,1630528..1630560,1630590..1632877,1632935..1633158,1633197..1634703) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA11690 by TMHMM2.0 at aa 1485-1507; uncharacterized protein 1634703 3861690 TA11690 Theileria annulata uncharacterized protein XP_952549.1 1629967 D 5874 CDS TA11685 3861689 complement(join(1634763..1635610,1635642..1636356)) 2 1 NC_011099.1 apicoplast phe trna synthetase, signal peptide present, possible apicoplast target sequence present, PF01409 tRNA synthetases class II core domain (F), PF03147 Ferredoxin-fold anticodon binding domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA11685 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA11685 by SignalP 2.0 HMM (Signal peptide probability 0.945, signal anchor probability 0.037) with cleavage site probability 0.596 between residues 23 and 24; phenylalanine-trna synthetase, putative 1636356 3861689 TA11685 Theileria annulata phenylalanine-trna synthetase, putative XP_952550.1 1634763 R 5874 CDS TA11680 3861688 join(1636554..1637595,1637680..1637879,1637911..1638122,1638151..1638347,1638378..1638802,1638834..1639085,1639115..1639240) 2 1 NC_011099.1 Weak Pfam hit to MAC/Perforin domain;e=0.00011;codon 333-653; contains possible signal peptide; Signal peptide predicted for TA11680 by SignalP 2.0 HMM (Signal peptide probability 0.718, signal anchor probability 0.000) with cleavage site probability 0.614 between residues 21 and 22; uncharacterized protein 1639240 3861688 TA11680 Theileria annulata uncharacterized protein XP_952551.1 1636554 D 5874 CDS TA11675 3861687 complement(1639694..1644097) 2 1 NC_011099.1 5'-3' exoribonuclease 2, putative 1644097 3861687 TA11675 Theileria annulata 5'-3' exoribonuclease 2, putative XP_952552.1 1639694 R 5874 CDS TA11670 3861686 complement(1644324..1646945) 2 1 NC_011099.1 uncharacterized protein 1646945 3861686 TA11670 Theileria annulata uncharacterized protein XP_952553.1 1644324 R 5874 CDS TA11665 3861685 complement(1647078..1649432) 2 1 NC_011099.1 uncharacterized protein 1649432 3861685 TA11665 Theileria annulata uncharacterized protein XP_952554.1 1647078 R 5874 CDS TA11660 3861684 complement(join(1651257..1651831,1651961..1652553,1652591..1652756,1652791..1652865,1652897..1653014,1653066..1653452,1653512..1655437)) 2 1 NC_011099.1 2 probable transmembrane helices predicted for TA11660 by TMHMM2.0 at aa 586-608 and 643-665; coatomer alpha subunit, putative 1655437 3861684 TA11660 Theileria annulata coatomer alpha subunit, putative XP_952555.1 1651257 R 5874 CDS TA11655 3861683 join(1656225..1656438,1656514..1656563) 2 1 NC_011099.1 uncharacterized protein 1656563 3861683 TA11655 Theileria annulata uncharacterized protein XP_952556.1 1656225 D 5874 CDS TA11640 3861680 join(1656612..1656694,1656735..1656795,1656831..1656939,1656995..1657215) 2 1 NC_011099.1 ubiquitin-conjugating enzyme e2, putative 1657215 3861680 TA11640 Theileria annulata ubiquitin-conjugating enzyme e2, putative XP_952557.1 1656612 D 5874 CDS TA11635 3861679 join(1657455..1657532,1657568..1657743,1657773..1658055) 2 1 NC_011099.1 rna binding protein, putative 1658055 3861679 TA11635 Theileria annulata rna binding protein, putative XP_952558.1 1657455 D 5874 CDS TA11630 3861678 complement(join(1658200..1658376,1658439..1658616,1658661..1658863,1658901..1658960,1658991..1659135,1659167..1659242,1659289..1659454,1659493..1659613,1659643..1659747,1659778..1659927,1659982..1660062,1660092..1660225,1660257..1660288,1660328..1660410,1660454..1660484,1660515..1660697,1660743..1660833,1660864..1660940,1660970..1661085,1661116..1661240,1661274..1661372,1661402..1661507,1661537..1661653,1661687..1661854,1661884..1661919,1661950..1662040,1662072..1662156,1662185..1662226,1662256..1662321,1662352..1662504,1662539..1662661)) 2 1 NC_011099.1 DNA repair protein rad50, putative 1662661 3861678 TA11630 Theileria annulata DNA repair protein rad50, putative XP_952559.1 1658200 R 5874 CDS TA11625 3861890 join(1663354..1663633,1663674..1664626) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA11625 by TMHMM2.0 at aa 99-121; uncharacterized protein 1664626 3861890 TA11625 Theileria annulata uncharacterized protein XP_952560.1 1663354 D 5874 CDS TA11620 3861889 join(1664815..1664987,1665020..1666057,1666090..1666098,1666170..1666278,1666311..1666693,1666851..1667631) 2 1 NC_011099.1 uncharacterized protein 1667631 3861889 TA11620 Theileria annulata uncharacterized protein XP_952561.1 1664815 D 5874 CDS TA11615 3861888 join(1667879..1667941,1667976..1668571,1668608..1670006) 2 1 NC_011099.1 putative RING-finger-like protein 1670006 3861888 TA11615 Theileria annulata putative RING-finger-like protein XP_952562.1 1667879 D 5874 CDS TA11610 3861887 complement(1670249..1672189) 2 1 NC_011099.1 heat shock 70 kDa protein 1672189 3861887 TA11610 Theileria annulata heat shock 70 kDa protein XP_952563.1 1670249 R 5874 CDS TA11605 3861886 complement(1672937..1673443) 2 1 NC_011099.1 uncharacterized protein 1673443 3861886 TA11605 Theileria annulata uncharacterized protein XP_952564.1 1672937 R 5874 CDS TA11600 3861885 join(1673746..1675777,1675830..1675937,1675989..1676479) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA11600 by TMHMM2.0 at aa 849-871; uncharacterized protein 1676479 3861885 TA11600 Theileria annulata uncharacterized protein XP_952565.1 1673746 D 5874 CDS TA11595 3861884 complement(join(1676596..1676691,1676723..1676836,1676877..1677017,1677056..1677283)) 2 1 NC_011099.1 Contains possible transmembrane domains; 2 probable transmembrane helices predicted for TA11595 by TMHMM2.0 at aa 133-151 and 155-174; uncharacterized protein 1677283 3861884 TA11595 Theileria annulata uncharacterized protein XP_952566.1 1676596 R 5874 CDS TA11585 3861882 complement(join(1677317..1677667,1677699..1677849,1677882..1677988,1678024..1678873,1678913..1679156,1679187..1679403,1679435..1679566,1679604..1679864)) 2 1 NC_011099.1 DNA repair helicase, putative 1679864 3861882 TA11585 Theileria annulata DNA repair helicase, putative XP_952567.1 1677317 R 5874 CDS TA11580 3861881 complement(join(1679967..1680027,1680064..1680240,1680271..1680407,1680436..1680759,1680790..1680942,1681007..1681356,1681389..1681476,1681507..1681657,1681688..1682166,1682199..1682396)) 2 1 NC_011099.1 dynamin-like protein, putative 1682396 3861881 TA11580 Theileria annulata dynamin-like protein, putative XP_952568.1 1679967 R 5874 CDS TA11575 3861880 complement(join(1682637..1682681,1682728..1682885,1682924..1682996,1683044..1683177,1683314..1683416)) 2 1 NC_011099.1 Possible signal sequence and apicoplast target sequence present; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11575 by SignalP 2.0 HMM (Signal peptide probability 0.662, signal anchor probability 0.020) with cleavage site probability 0.440 between residues 21 and 22; ubiquitin,putative 1683416 3861880 TA11575 Theileria annulata ubiquitin,putative XP_952569.1 1682637 R 5874 CDS TA11570 3861879 1684016..1684921 2 1 NC_011099.1 4 probable transmembrane helices predicted for TA11570 by TMHMM2.0 at aa 112-134, 169-191, 211-232 and 271-293; ADP/ATP transporter, putative 1684921 3861879 TA11570 Theileria annulata ADP/ATP transporter, putative XP_952570.1 1684016 D 5874 CDS TA11565 3861878 1685503..1686744 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA11565 by TMHMM2.0 at aa 43-65; Signal anchor predicted for TA11565 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.983) with cleavage site probability 0.000 between residues 61 and 62; cysteine proteinase, putative 1686744 3861878 TA11565 Theileria annulata cysteine proteinase, putative XP_952571.1 1685503 D 5874 CDS TA11560 3861877 join(1687175..1687267,1687309..1687621,1687678..1688723) 2 1 NC_011099.1 nima-related protein kinase, putative 1688723 3861877 TA11560 Theileria annulata nima-related protein kinase, putative XP_952572.1 1687175 D 5874 CDS TA11555 3861876 1688821..1690125 2 1 NC_011099.1 uncharacterized protein 1690125 3861876 TA11555 Theileria annulata uncharacterized protein XP_952573.1 1688821 D 5874 CDS TA11550 3861875 complement(join(1690809..1690937,1690967..1691161,1691194..1691340,1691376..1691543,1691576..1691653)) 2 1 NC_011099.1 uncharacterized protein 1691653 3861875 TA11550 Theileria annulata uncharacterized protein XP_952574.1 1690809 R 5874 CDS TA11545 3861874 join(1692016..1692832,1692862..1693067) 2 1 NC_011099.1 uncharacterized protein 1693067 3861874 TA11545 Theileria annulata uncharacterized protein XP_952575.1 1692016 D 5874 CDS TA11540 3861873 complement(1693112..1695211) 2 1 NC_011099.1 pyruvate kinase, putative 1695211 3861873 TA11540 Theileria annulata pyruvate kinase, putative XP_952576.1 1693112 R 5874 CDS TA11535 3861872 join(1695518..1695808,1695842..1696168) 2 1 NC_011099.1 uncharacterized protein 1696168 3861872 TA11535 Theileria annulata uncharacterized protein XP_952577.1 1695518 D 5874 CDS TA11530 3862372 join(1696257..1696991,1697031..1697294,1697366..1697608) 2 1 NC_011099.1 uncharacterized protein 1697608 3862372 TA11530 Theileria annulata uncharacterized protein XP_952578.1 1696257 D 5874 CDS TA11525 3862371 complement(join(1697693..1697917,1697961..1698598,1698646..1698745,1698817..1698952,1698984..1699052,1699083..1699165,1699214..1699317,1699357..1699512,1699560..1699669,1699703..1699785,1699818..1699958,1700004..1700162,1700194..1700433,1700474..1700515)) 2 1 NC_011099.1 uncharacterized protein 1700515 3862371 TA11525 Theileria annulata uncharacterized protein XP_952579.1 1697693 R 5874 CDS TA11520 3862370 join(1700840..1700974,1701008..1701367,1701397..1701458,1701488..1701683,1701713..1701925,1701959..1702104,1702157..1702257,1702287..1702808,1702837..1702967,1702998..1703273,1703305..1703442,1703472..1703639) 2 1 NC_011099.1 uncharacterized protein 1703639 3862370 TA11520 Theileria annulata uncharacterized protein XP_952580.1 1700840 D 5874 CDS TA11515 3862369 1704140..1704544 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA11515 by TMHMM2.0 at aa 108-130; uncharacterized protein 1704544 3862369 TA11515 Theileria annulata uncharacterized protein XP_952581.1 1704140 D 5874 CDS TA11510 3862368 join(1704797..1704824,1704866..1705114,1705150..1705319,1705351..1705498,1705531..1705607,1705641..1705720,1705750..1706115,1706144..1706243) 2 1 NC_011099.1 DNA-damage inducible protein ddi1-like, putative 1706243 3862368 TA11510 Theileria annulata DNA-damage inducible protein ddi1-like, putative XP_952582.1 1704797 D 5874 CDS TA11505 3862367 complement(join(1706338..1706498,1706531..1706654,1706703..1706937,1706968..1707269)) 2 1 NC_011099.1 Possible transmembrane domains present; 3 probable transmembrane helices predicted for TA11505 by TMHMM2.0 at aa 66-88, 98-120 and 160-182; uncharacterized protein 1707269 3862367 TA11505 Theileria annulata uncharacterized protein XP_952583.1 1706338 R 5874 CDS TA11500 3862366 join(1708043..1708115,1708169..1708410,1708439..1708701,1708734..1708885,1708923..1709166,1709198..1709343,1709374..1709498,1709527..1709625,1709667..1709753,1709784..1709914,1709952..1710053,1710083..1710227) 2 1 NC_011099.1 uncharacterized protein 1710227 3862366 TA11500 Theileria annulata uncharacterized protein XP_952584.1 1708043 D 5874 CDS TA11495 3862365 complement(join(1710293..1710730,1710789..1710873,1710904..1711520)) 2 1 NC_011099.1 Contains putative signal peptide; 1 probable transmembrane helix predicted for TA11495 by TMHMM2.0 at aa 20-37; Signal anchor predicted for TA11495 by SignalP 2.0 HMM (Signal peptide probability 0.154, signal anchor probability 0.606) with cleavage site probability 0.088 between residues 42 and 43; uncharacterized protein 1711520 3862365 TA11495 Theileria annulata uncharacterized protein XP_952585.1 1710293 R 5874 CDS TA11490 3862364 1712987..1714258 2 1 NC_011099.1 uncharacterized protein 1714258 3862364 TA11490 Theileria annulata uncharacterized protein XP_952586.1 1712987 D 5874 CDS TA11475 3862361 complement(join(1714358..1714441,1714473..1714568,1714619..1714801,1714871..1714928,1715006..1715046,1715076..1715185,1715224..1715299,1715330..1715425,1715455..1715526,1715556..1715678,1715717..1715830)) 2 1 NC_011099.1 methionine-trna ligase, putative 1715830 3862361 TA11475 Theileria annulata methionine-trna ligase, putative XP_952587.1 1714358 R 5874 CDS TA11470 3862360 join(1716733..1717074,1717105..1717342,1717414..1717891,1717958..1718084,1718153..1718170) 2 1 NC_011099.1 eukaryotic translation initiation factor 4a, putative 1718170 3862360 TA11470 Theileria annulata eukaryotic translation initiation factor 4a, putative XP_952588.1 1716733 D 5874 CDS TA11465 3862359 complement(join(1718197..1718275,1718307..1719006,1719044..1719286,1719317..1719349,1719426..1719629,1719662..1719712,1719745..1719808)) 2 1 NC_011099.1 Contains a putative signal peptide and a possible EGF-like domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11465 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.733 between residues 21 and 22; uncharacterized protein 1719808 3862359 TA11465 Theileria annulata uncharacterized protein XP_952589.1 1718197 R 5874 CDS TA11460 3862358 join(1720556..1720770,1720801..1720894,1720925..1721064,1721150..1721302,1721335..1721362) 2 1 NC_011099.1 Contains putative signal petideand transmembrane domain; 5 probable transmembrane helices predicted for TA11460 by TMHMM2.0 at aa 12-34, 49-71, 91-113, 133-155 and 162-179; uncharacterized protein 1721362 3862358 TA11460 Theileria annulata uncharacterized protein XP_952590.1 1720556 D 5874 CDS TA11455 3862357 complement(join(1721440..1722251,1722493..1722544)) 2 1 NC_011099.1 uncharacterized protein 1722544 3862357 TA11455 Theileria annulata uncharacterized protein XP_952591.1 1721440 R 5874 CDS TA11450 3862356 complement(1722868..1727739) 2 1 NC_011099.1 chr2.cand.54 - conserved hypothetical protein, kelch motif, Histidine kinase-like ATPases domain; uncharacterized protein 1727739 3862356 TA11450 Theileria annulata uncharacterized protein XP_952592.1 1722868 R 5874 CDS TA11445 3862355 complement(join(1728877..1729157,1729191..1729261,1729329..1729366,1729425..1729640)) 2 1 NC_011099.1 uncharacterized protein 1729640 3862355 TA11445 Theileria annulata uncharacterized protein XP_952593.1 1728877 R 5874 CDS TA11440 3862354 complement(join(1729738..1730042,1730103..1730226,1730299..1731707,1731776..1733984)) 2 1 NC_011099.1 smc protein, putative 1733984 3862354 TA11440 Theileria annulata smc protein, putative XP_952594.1 1729738 R 5874 CDS TA11435 3862353 join(1734397..1734507,1734542..1734626,1734658..1734842) 2 1 NC_011099.1 The P. falciparum hypothetical protein mal13p1.81pf is longer at Nterm; 2 probable transmembrane helices predicted for TA11435 by TMHMM2.0 at aa 49-71 and 92-114; uncharacterized protein 1734842 3862353 TA11435 Theileria annulata uncharacterized protein XP_952595.1 1734397 D 5874 CDS TA11430 3861772 complement(1734878..1737139) 2 1 NC_011099.1 uncharacterized protein 1737139 3861772 TA11430 Theileria annulata uncharacterized protein XP_952596.1 1734878 R 5874 CDS TA16085 3862313 join(1737617..1737754,1737785..1737944,1737981..1738157,1738196..1738299) 2 1 NC_011099.1 uncharacterized protein 1738299 3862313 TA16085 Theileria annulata uncharacterized protein XP_952597.1 1737617 D 5874 CDS TA16080 3862312 join(1738596..1739041,1739104..1739223,1739271..1741770) 2 1 NC_011099.1 internal splicing possible exon III; replication licensing factor, putative 1741770 3862312 TA16080 Theileria annulata replication licensing factor, putative XP_952598.1 1738596 D 5874 CDS TA16075 3862311 complement(join(1741808..1742073,1742103..1742347,1742409..1742479,1742509..1742603,1742644..1743007,1743076..1743209,1743240..1743389,1743421..1743865)) 2 1 NC_011099.1 uncharacterized protein 1743865 3862311 TA16075 Theileria annulata uncharacterized protein XP_952599.1 1741808 R 5874 CDS TA16070 3862310 join(1744073..1744360,1744391..1744445,1744475..1744522,1744558..1745315) 2 1 NC_011099.1 ubiquitin carboxyl-terminal hydrolase, putative 1745315 3862310 TA16070 Theileria annulata ubiquitin carboxyl-terminal hydrolase, putative XP_952600.1 1744073 D 5874 CDS TA16065 3862309 join(1745741..1745996,1746042..1747242,1747272..1747747,1747777..1748595,1748626..1748732) 2 1 NC_011099.1 uncharacterized protein 1748732 3862309 TA16065 Theileria annulata uncharacterized protein XP_952601.1 1745741 D 5874 CDS TA16060 3862308 join(1748768..1749028,1749074..1749111,1749145..1749289,1749323..1750207,1750237..1750932) 2 1 NC_011099.1 uncharacterized protein 1750932 3862308 TA16060 Theileria annulata uncharacterized protein XP_952602.1 1748768 D 5874 CDS TA15995 3861845 complement(join(1751112..1751525,1751588..1752160,1752212..1753109,1753147..1753231,1753269..1753383)) 2 1 NC_011099.1 long-chain acyl-coa synthetase, putative 1753383 3861845 TA15995 Theileria annulata long-chain acyl-coa synthetase, putative XP_952603.1 1751112 R 5874 CDS TA15990 3861844 join(1753528..1753552,1753593..1753678,1753721..1753816,1753847..1753924) 2 1 NC_011099.1 u6 snrna-associated sm-like protein Lsm3, putative 1753924 3861844 TA15990 Theileria annulata u6 snrna-associated sm-like protein Lsm3, putative XP_952604.1 1753528 D 5874 CDS TA15885 3861862 complement(1753962..1754882) 2 1 NC_011099.1 Contains 5 putative transmembrane domains; 5 probable transmembrane helices predicted for TA15885 by TMHMM2.0 at aa 90-109, 129-148, 224-246, 253-270 and 285-304; integral membrane protein, putative 1754882 3861862 TA15885 Theileria annulata integral membrane protein, putative XP_952605.1 1753962 R 5874 CDS TA15880 3861861 join(1754976..1755120,1755163..1755189,1755231..1755293,1755358..1755484,1755517..1755776,1755806..1755992,1756022..1756430) 2 1 NC_011099.1 uncharacterized protein 1756430 3861861 TA15880 Theileria annulata uncharacterized protein XP_952606.1 1754976 D 5874 CDS TA15775 3861995 complement(join(1756506..1756863,1756899..1757046,1757087..1757189,1757228..1757362)) 2 1 NC_011099.1 Contains putative signal peptide; DNA binding protein, putative 1757362 3861995 TA15775 Theileria annulata DNA binding protein, putative XP_952607.1 1756506 R 5874 CDS TA15770 3861994 1757560..1758654 2 1 NC_011099.1 uncharacterized protein 1758654 3861994 TA15770 Theileria annulata uncharacterized protein XP_952608.1 1757560 D 5874 CDS TA15715 3862121 join(1759574..1760525,1760594..1761384) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15715 by TMHMM2.0 at aa 27-49; Signal anchor predicted for TA15715 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.990) with cleavage site probability 0.000 between residues 43 and 44; cysteine protease, putative 1761384 3862121 TA15715 Theileria annulata cysteine protease, putative XP_952609.1 1759574 D 5874 CDS TA15660 3862110 join(1761772..1762420,1762477..1763291) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15660 by TMHMM2.0 at aa 36-58; Signal anchor predicted for TA15660 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues -1 and 0; cysteine protease, putative 1763291 3862110 TA15660 Theileria annulata cysteine protease, putative XP_952610.1 1761772 D 5874 CDS TA15605 3862157 1763566..1763955 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA15605 by TMHMM2.0 at aa 75-97; uncharacterized protein 1763955 3862157 TA15605 Theileria annulata uncharacterized protein XP_952611.1 1763566 D 5874 CDS TA15550 3862146 join(1764117..1764487,1764521..1764609,1764640..1764779,1764811..1764858,1764889..1764988,1765021..1765649) 2 1 NC_011099.1 DnaJ protein, putative 1765649 3862146 TA15550 Theileria annulata DnaJ protein, putative XP_952612.1 1764117 D 5874 CDS TA15495 3861621 join(1765733..1765890,1766004..1766141,1766175..1766271,1766332..1766363,1766395..1766589,1766629..1766701,1766735..1766803,1766835..1767080,1767151..1767292,1767325..1767437,1767493..1767610,1767644..1767719,1767749..1767838,1767868..1767940,1767971..1768078,1768112..1768174,1768206..1768292) 2 1 NC_011099.1 replication factor-a protein 1, putative 1768292 3861621 TA15495 Theileria annulata replication factor-a protein 1, putative XP_952613.1 1765733 D 5874 CDS TA15440 3861585 join(1768662..1768940,1769000..1769106,1769153..1769220,1769255..1769331,1769365..1769472) 2 1 NC_011099.1 50S ribosomal protein l24, no apparent signal or apicoplast target sequence present, contains putative Pfam (PF00467) KOW motif; 50S ribosomal protein l24, putative 1769472 3861585 TA15440 Theileria annulata 50S ribosomal protein l24, putative XP_952614.1 1768662 D 5874 CDS TA15385 3861574 join(1770066..1770287,1770359..1770559,1770624..1770869) 2 1 NC_011099.1 60S ribosomal protein l10, putative 1770869 3861574 TA15385 Theileria annulata 60S ribosomal protein l10, putative XP_952615.1 1770066 D 5874 CDS TA15280 3861742 complement(join(1771148..1771615,1771694..1771807,1771864..1772157)) 2 1 NC_011099.1 Contains putative Pafm (PF00397) WW domain; uncharacterized protein 1772157 3861742 TA15280 Theileria annulata uncharacterized protein XP_952616.1 1771148 R 5874 CDS TA15275 3861741 1772729..1773223 2 1 NC_011099.1 transcription factor btf3 homolog, putative 1773223 3861741 TA15275 Theileria annulata transcription factor btf3 homolog, putative XP_952617.1 1772729 D 5874 CDS TA15220 3861663 1773769..1774251 2 1 NC_011099.1 60S ribosomal protein l21, putative 1774251 3861663 TA15220 Theileria annulata 60S ribosomal protein l21, putative XP_952618.1 1773769 D 5874 CDS TA15115 3862196 complement(join(1774377..1774715,1774746..1774877,1774939..1775016,1775047..1775378,1775426..1775654)) 2 1 NC_011099.1 arginine N-methyltransferase, putative 1775654 3862196 TA15115 Theileria annulata arginine N-methyltransferase, putative XP_952619.1 1774377 R 5874 CDS TA15060 3862185 complement(1775903..1778029) 2 1 NC_011099.1 putative regulatory protein, C-terminus: 2 x PF00642 Zinc finger C-x8-C-x5-C-x3-H type; Zinc finger-like regulatory protein, putative 1778029 3862185 TA15060 Theileria annulata Zinc finger-like regulatory protein, putative XP_952620.1 1775903 R 5874 CDS TA15005 3862213 complement(join(1778782..1779730,1779826..1780323,1780455..1780649,1780762..1781000)) 2 1 NC_011099.1 uncharacterized protein 1781000 3862213 TA15005 Theileria annulata uncharacterized protein XP_952621.1 1778782 R 5874 CDS TA15000 3862212 join(1781355..1781708,1781757..1781850,1781892..1782271) 2 1 NC_011099.1 2 probable transmembrane helices predicted for TA15000 by TMHMM2.0 at aa 201-223 and 243-265; uncharacterized protein 1782271 3862212 TA15000 Theileria annulata uncharacterized protein XP_952622.1 1781355 D 5874 CDS TA14895 3862230 complement(1784338..1785138) 2 1 NC_011099.1 60S ribosomal protein l7a, putative 1785138 3862230 TA14895 Theileria annulata 60S ribosomal protein l7a, putative XP_952623.1 1784338 R 5874 CDS TA14890 3862229 join(1786383..1786455,1786700..1787520,1787576..1787602) 2 1 NC_011099.1 60S ribosomal protein l5, putative 1787602 3862229 TA14890 Theileria annulata 60S ribosomal protein l5, putative XP_952624.1 1786383 D 5874 CDS TA14785 3862287 complement(join(1787605..1787710,1787748..1787798,1787913..1788115,1788162..1788290,1788321..1788581,1788690..1788821)) 2 1 NC_011099.1 uncharacterized protein 1788821 3862287 TA14785 Theileria annulata uncharacterized protein XP_952625.1 1787605 R 5874 CDS TA14730 3862346 complement(join(1789337..1789423,1789493..1789558,1789650..1789685)) 2 1 NC_011099.1 ribosomal protein l29, putative 1789685 3862346 TA14730 Theileria annulata ribosomal protein l29, putative XP_952626.1 1789337 R 5874 CDS TA14725 3862345 join(1790486..1790654,1790778..1791106,1791163..1791208,1791238..1791437) 2 1 NC_011099.1 uncharacterized protein 1791437 3862345 TA14725 Theileria annulata uncharacterized protein XP_952627.1 1790486 D 5874 CDS TA14670 3862334 join(1791760..1792996,1793079..1793953) 2 1 NC_011099.1 uncharacterized protein 1793953 3862334 TA14670 Theileria annulata uncharacterized protein XP_952628.1 1791760 D 5874 CDS TA14565 3862507 complement(join(1793993..1794074,1794105..1794218,1794302..1794552)) 2 1 NC_011099.1 ribosomal protein l27, putative 1794552 3862507 TA14565 Theileria annulata ribosomal protein l27, putative XP_952629.1 1793993 R 5874 CDS TA14510 3862496 complement(join(1794996..1795496,1795531..1796466)) 2 1 NC_011099.1 uncharacterized protein 1796466 3862496 TA14510 Theileria annulata uncharacterized protein XP_952630.1 1794996 R 5874 CDS TA14505 3862495 join(1796696..1796849,1796884..1797015,1797047..1797156,1797194..1797255,1797334..1797574,1797636..1797854) 2 1 NC_011099.1 uncharacterized protein 1797854 3862495 TA14505 Theileria annulata uncharacterized protein XP_952631.1 1796696 D 5874 CDS TA14400 3862171 complement(join(1797946..1798276,1798347..1798516,1798566..1799839,1799890..1800049,1800106..1800515,1800555..1800989,1801029..1801242)) 2 1 NC_011099.1 uncharacterized protein 1801242 3862171 TA14400 Theileria annulata uncharacterized protein XP_952632.1 1797946 R 5874 CDS TA14395 3862170 join(1801468..1801781,1801819..1801954,1802042..1802230,1802302..1802394,1802444..1803139) 2 1 NC_011099.1 uncharacterized protein 1803139 3862170 TA14395 Theileria annulata uncharacterized protein XP_952633.1 1801468 D 5874 CDS TA14290 3861634 complement(join(1803206..1803274,1803344..1804328,1804363..1804542,1804580..1804610,1804704..1804767)) 2 1 NC_011099.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA14290 by TMHMM2.0 at aa 5-23; Signal peptide predicted for TA14290 by SignalP 2.0 HMM (Signal peptide probability 0.958, signal anchor probability 0.006) with cleavage site probability 0.640 between residues 20 and 21; 1-deoxy-D-xylulose 5-phosphate reducto-isomerase, putative 1804767 3861634 TA14290 Theileria annulata 1-deoxy-D-xylulose 5-phosphate reducto-isomerase, putative XP_952634.1 1803206 R 5874 CDS TA14235 3862099 complement(join(1805435..1805758,1805801..1806975,1807032..1807050)) 2 1 NC_011099.1 uncharacterized protein 1807050 3862099 TA14235 Theileria annulata uncharacterized protein XP_952635.1 1805435 R 5874 CDS TA14180 3862088 complement(join(1807249..1807374,1807456..1808205)) 2 1 NC_011099.1 uncharacterized protein 1808205 3862088 TA14180 Theileria annulata uncharacterized protein XP_952636.1 1807249 R 5874 CDS TA14175 3862087 join(1809897..1813103,1813204..1813497) 2 1 NC_011099.1 uncharacterized protein 1813497 3862087 TA14175 Theileria annulata uncharacterized protein XP_952637.1 1809897 D 5874 CDS TA14070 3861736 complement(1813580..1814614) 2 1 NC_011099.1 uncharacterized protein 1814614 3861736 TA14070 Theileria annulata uncharacterized protein XP_952638.1 1813580 R 5874 CDS TA14065 3861735 join(1815086..1815137,1815180..1815406,1815459..1815527,1815636..1815854) 2 1 NC_011099.1 RNA and export factor binding protein, putative 1815854 3861735 TA14065 Theileria annulata RNA and export factor binding protein, putative XP_952639.1 1815086 D 5874 CDS TA13960 3861926 complement(join(1816015..1816191,1816263..1816868)) 2 1 NC_011099.1 2 probable transmembrane helices predicted for TA13960 by TMHMM2.0 at aa 62-84 and 162-184; uncharacterized protein 1816868 3861926 TA13960 Theileria annulata uncharacterized protein XP_952640.1 1816015 R 5874 CDS TA13955 3861925 1817518..1818321 2 1 NC_011099.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA13955 by SignalP 2.0 HMM (Signal peptide probability 0.793, signal anchor probability 0.199) with cleavage site probability 0.482 between residues 21 and 22; uncharacterized protein 1818321 3861925 TA13955 Theileria annulata uncharacterized protein XP_952641.1 1817518 D 5874 CDS TA13900 3861914 1818737..1819129 2 1 NC_011099.1 40s ribosomal protein s15a, putative 1819129 3861914 TA13900 Theileria annulata 40s ribosomal protein s15a, putative XP_952642.1 1818737 D 5874 CDS TA13795 3861796 complement(join(1819258..1820389,1820476..1820689,1820724..1820757)) 2 1 NC_011099.1 hypothetical protein, conserved; uncharacterized protein 1820757 3861796 TA13795 Theileria annulata uncharacterized protein XP_952643.1 1819258 R 5874 CDS TA13740 3861902 complement(join(1821366..1821476,1821574..1824138)) 2 1 NC_011099.1 uncharacterized protein 1824138 3861902 TA13740 Theileria annulata uncharacterized protein XP_952644.1 1821366 R 5874 CDS TA13735 3861901 join(1824872..1824902,1825012..1825760) 2 1 NC_011099.1 inorganic pyrophosphatase, putative 1825760 3861901 TA13735 Theileria annulata inorganic pyrophosphatase, putative XP_952645.1 1824872 D 5874 CDS TA13630 3861822 complement(join(1825825..1825998,1826028..1826096,1826157..1826227,1826312..1826395,1826426..1826627,1826714..1828081)) 2 1 NC_011099.1 uncharacterized protein 1828081 3861822 TA13630 Theileria annulata uncharacterized protein XP_952646.1 1825825 R 5874 CDS TA13575 3862468 complement(join(1828215..1828342,1828406..1828861,1828947..1829042,1829190..1830119,1830249..1831284)) 2 1 NC_011099.1 aaa family ATPase, putative 1831284 3862468 TA13575 Theileria annulata aaa family ATPase, putative XP_952647.1 1828215 R 5874 CDS TA13570 3862467 1831866..1832978 2 1 NC_011099.1 deoxyhypusine synthase, putative 1832978 3862467 TA13570 Theileria annulata deoxyhypusine synthase, putative XP_952648.1 1831866 D 5874 CDS TA13465 3861964 complement(join(1833082..1833117,1833149..1833214,1833303..1833517,1833546..1833643,1833693..1833763,1833889..1833963,1834057..1834143,1834201..1834374,1834432..1834581,1834653..1834724,1834757..1834804,1834942..1835109,1835139..1835255)) 2 1 NC_011099.1 all_bases.C.cand.171 - nmt1, PF01233 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain, PF02799 Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; glycylpeptide N-tetradecanoyltransferase 1, putative 1835255 3861964 TA13465 Theileria annulata glycylpeptide N-tetradecanoyltransferase 1, putative XP_952649.1 1833082 R 5874 CDS TA13410 3861953 complement(join(1835793..1836684,1836780..1836921,1837040..1837148)) 2 1 NC_011099.1 actin ii, putative 1837148 3861953 TA13410 Theileria annulata actin ii, putative XP_952650.1 1835793 R 5874 CDS TA13405 3861952 join(1837415..1837842,1837894..1840262,1840366..1842019,1842077..1842611) 2 1 NC_011099.1 Phosphatidylinositol-4-phosphate 5-Kinase, putative 1842611 3861952 TA13405 Theileria annulata Phosphatidylinositol-4-phosphate 5-Kinase, putative XP_952651.1 1837415 D 5874 CDS TA13350 3861559 1842856..1844706 2 1 NC_011099.1 uncharacterized protein 1844706 3861559 TA13350 Theileria annulata uncharacterized protein XP_952652.1 1842856 D 5874 CDS TA13245 3862253 complement(join(1844890..1846668,1846798..1847240,1847286..1847300,1847432..1848295,1848437..1849633,1849760..1850053,1850234..1850266,1850365..1850539)) 2 1 NC_011099.1 Signal peptide predicted for TA13245 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.001) with cleavage site probability 0.516 between residues 24 and 25; uncharacterized protein 1850539 3862253 TA13245 Theileria annulata uncharacterized protein XP_952653.1 1844890 R 5874 CDS TA13190 3862086 complement(join(1851246..1851627,1851677..1851759)) 2 1 NC_011099.1 PF02136 Nuclear transport factor 2 (NTF2) domain; nuclear transport factor 2, putative 1851759 3862086 TA13190 Theileria annulata nuclear transport factor 2, putative XP_952654.1 1851246 R 5874 CDS TA13185 3862085 join(1852048..1852329,1852530..1852647,1852731..1852921) 2 1 NC_011099.1 Contains a putative signal peptide; Signal peptide predicted for TA13185 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.000) with cleavage site probability 0.873 between residues 17 and 18; peptidyl-prolyl cis-trans isomerase taCyP precursor, putative 1852921 3862085 TA13185 Theileria annulata peptidyl-prolyl cis-trans isomerase taCyP precursor, putative XP_952655.1 1852048 D 5874 CDS TA13130 3862074 1853338..1855158 2 1 NC_011099.1 uncharacterized protein 1855158 3862074 TA13130 Theileria annulata uncharacterized protein XP_952656.1 1853338 D 5874 CDS TA13025 3862013 complement(join(1855488..1855819,1855882..1856371)) 2 1 NC_011099.1 uncharacterized protein 1856371 3862013 TA13025 Theileria annulata uncharacterized protein XP_952657.1 1855488 R 5874 CDS TA12970 3862483 complement(join(1856723..1857148,1857322..1857741,1857937..1858180,1858358..1858506)) 2 1 NC_011099.1 aspartate aminotransferase, cytoplasmic, putative 1858506 3862483 TA12970 Theileria annulata aspartate aminotransferase, cytoplasmic, putative XP_952658.1 1856723 R 5874 CDS TA12915 3862472 complement(join(1858951..1859051,1859229..1859512,1859664..1860091)) 2 1 NC_011099.1 cytochrome c oxidase subunit, putative 1860091 3862472 TA12915 Theileria annulata cytochrome c oxidase subunit, putative XP_952659.1 1858951 R 5874 CDS TA12910 3862471 join(1860848..1860851,1861013..1861983) 2 1 NC_011099.1 PF00808 Histone-like transcription factor (CBF/NF-Y) and archaeal histone, PF02969 TATA box binding protein associated factor (TAF); histone h3-like, putative 1861983 3862471 TA12910 Theileria annulata histone h3-like, putative XP_952660.1 1860848 D 5874 CDS TA12805 3861773 complement(join(1862271..1863044,1863141..1863281)) 2 1 NC_011099.1 serine/threonine protein phosphatase pp-x isozyme 1, putative 1863281 3861773 TA12805 Theileria annulata serine/threonine protein phosphatase pp-x isozyme 1, putative XP_952661.1 1862271 R 5874 CDS TA12750 3862134 complement(join(1863660..1863815,1863996..1864939,1865222..1865264)) 2 1 NC_011099.1 uncharacterized protein 1865264 3862134 TA12750 Theileria annulata uncharacterized protein XP_952662.1 1863660 R 5874 CDS TA12695 3862280 complement(join(1865660..1866024,1866106..1866337,1866564..1867249,1867403..1867450,1867537..1867588)) 2 1 NC_011099.1 Putative signal peptide and apicoplast target sequence present; prolyl-t-RNA synthase, putative 1867588 3862280 TA12695 Theileria annulata prolyl-t-RNA synthase, putative XP_952663.1 1865660 R 5874 CDS TA12690 3862279 1868362..1869702 2 1 NC_011099.1 histone deacetylase, putative 1869702 3862279 TA12690 Theileria annulata histone deacetylase, putative XP_952664.1 1868362 D 5874 CDS TA12635 3862268 1870307..1872346 2 1 NC_011099.1 Theileria-specific hypothetical protein family member, putative 1872346 3862268 TA12635 Theileria annulata Theileria-specific hypothetical protein family member, putative XP_952665.1 1870307 D 5874 CDS TA12580 3861711 1873761..1875611 2 1 NC_011099.1 Theileria-specific hypothetical protein family member, putative 1875611 3861711 TA12580 Theileria annulata Theileria-specific hypothetical protein family member, putative XP_952666.1 1873761 D 5874 CDS TA12525 3861700 1877026..1878984 2 1 NC_011099.1 Theileria-specific hypothetical protein family member, putative 1878984 3861700 TA12525 Theileria annulata Theileria-specific hypothetical protein family member, putative XP_952667.1 1877026 D 5874 CDS TA12420 3862315 complement(join(1879432..1879503,1879551..1879618,1879806..1879906,1880097..1880272)) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA12420 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA12420 by SignalP 2.0 HMM (Signal peptide probability 0.183, signal anchor probability 0.644) with cleavage site probability 0.044 between residues 29 and 30; yippee-like zinc binding protein, putative 1880272 3862315 TA12420 Theileria annulata yippee-like zinc binding protein, putative XP_952668.1 1879432 R 5874 CDS TA12365 3862441 complement(1880689..1881138) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA12365 by TMHMM2.0 at aa 123-145; GPI-Anchor Signal predicted for TA12365 by DGPI v2.04, no cleavage site predicted; thioredoxin, putative 1881138 3862441 TA12365 Theileria annulata thioredoxin, putative XP_952669.1 1880689 R 5874 CDS TA12310 3862066 complement(join(1881423..1881918,1882100..1882800)) 2 1 NC_011099.1 vacuolar ATP synthase, putative 1882800 3862066 TA12310 Theileria annulata vacuolar ATP synthase, putative XP_952670.1 1881423 R 5874 CDS TA12305 3862065 join(1883220..1883901,1883999..1884914,1885042..1885176,1885336..1885555,1885644..1885777,1885911..1886028,1886046..1886224,1886244..1886348,1886451..1886613) 2 1 NC_011099.1 1 probable transmembrane helix predicted for TA12305 by TMHMM2.0 at aa 784-806; uncharacterized protein 1886613 3862065 TA12305 Theileria annulata uncharacterized protein XP_952671.1 1883220 D 5874 CDS TA12250 3862055 1887087..1889033 2 1 NC_011099.1 uncharacterized protein 1889033 3862055 TA12250 Theileria annulata uncharacterized protein XP_952672.1 1887087 D 5874 CDS TA12195 3861944 1889214..1890680 2 1 NC_011099.1 subtelomeric sfi-fragment-related protein family member, putative 1890680 3861944 TA12195 Theileria annulata subtelomeric sfi-fragment-related protein family member, putative XP_952673.1 1889214 D 5874 CDS TA12140 3861933 1890941..1892560 2 1 NC_011099.1 subtelomeric sfi-fragment-related protein family member, putative 1892560 3861933 TA12140 Theileria annulata subtelomeric sfi-fragment-related protein family member, putative XP_952674.1 1890941 D 5874 CDS TA12035 3862031 complement(join(1892670..1896623,1896851..1897435)) 2 1 NC_011099.1 Contains putative signal peptide; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA12035 by SignalP 2.0 HMM (Signal peptide probability 0.855, signal anchor probability 0.000) with cleavage site probability 0.500 between residues 18 and 19; uncharacterized protein 1897435 3862031 TA12035 Theileria annulata uncharacterized protein XP_952675.1 1892670 R 5874 CDS TA11980 3861980 complement(join(1897610..1897664,1897702..1897871,1897989..1898159)) 2 1 NC_011099.1 hypothetical protein, conserved; uncharacterized protein 1898159 3861980 TA11980 Theileria annulata uncharacterized protein XP_952676.1 1897610 R 5874 CDS TA11925 3861969 complement(join(1898451..1898573,1898624..1898830,1898924..1899170,1899210..1899421)) 2 1 NC_011099.1 3 probable transmembrane helices predicted for TA11925 by TMHMM2.0 at aa 46-68, 186-208 and 223-245; uncharacterized protein 1899421 3861969 TA11925 Theileria annulata uncharacterized protein XP_952677.1 1898451 R 5874 CDS TA11920 3862412 join(1899572..1899869,1900016..1900803) 2 1 NC_011099.1 uncharacterized protein 1900803 3862412 TA11920 Theileria annulata uncharacterized protein XP_952678.1 1899572 D 5874 CDS TA11815 3862430 complement(join(1901228..1901476,1901596..1903011)) 2 1 NC_011099.1 ubiquitin-transferase, putative 1903011 3862430 TA11815 Theileria annulata ubiquitin-transferase, putative XP_952679.1 1901228 R 5874 CDS TA11760 3862419 complement(join(1903158..1904340,1904377..1904975)) 2 1 NC_011099.1 Contains a putative signal peptide; uncharacterized protein 1904975 3862419 TA11760 Theileria annulata uncharacterized protein XP_952680.1 1903158 R 5874 CDS TA11705 3861693 complement(join(1905123..1905356,1905427..1905550,1905640..1905983,1906097..1906193,1906362..1906663,1906773..1907295,1907402..1907499,1907575..1907668,1907785..1909640,1909779..1909799)) 2 1 NC_011099.1 Shows weak hit (4.4e-06) to Pfam PF00169 PH domain; uncharacterized protein 1909799 3861693 TA11705 Theileria annulata uncharacterized protein XP_952681.1 1905123 R 5874 CDS TA11650 3861682 complement(join(1909986..1910089,1910158..1910290,1910353..1910511,1910564..1910910,1911055..1911174,1911299..1911362)) 2 1 NC_011099.1 chr2.cand.5 - hypothetical protein, low similarity to replication factor; uncharacterized protein 1911362 3861682 TA11650 Theileria annulata uncharacterized protein XP_952682.1 1909986 R 5874 CDS TA11645 3861681 join(1911594..1911681,1911724..1911769,1911925..1912534,1912572..1912784) 2 1 NC_011099.1 chr2.C.cand.515 - hypothetical protein; uncharacterized protein 1912784 3861681 TA11645 Theileria annulata uncharacterized protein XP_952683.1 1911594 D 5874 CDS TA11590 3861883 1913058..1915361 2 1 NC_011099.1 chr2.C.cand.516 - hypothetical protein; uncharacterized protein 1915361 3861883 TA11590 Theileria annulata uncharacterized protein XP_952684.1 1913058 D 5874 CDS TA11485 3862363 complement(1915451..1920520) 2 1 NC_011099.1 chr2.cand.3 - hypothetical protein, signal peptide; Signal peptide predicted for TA11485 by SignalP 2.0 HMM (Signal peptide probability 0.950, signal anchor probability 0.000) with cleavage site probability 0.394 between residues 14 and 15; uncharacterized protein 1920520 3862363 TA11485 Theileria annulata uncharacterized protein XP_952685.1 1915451 R 5874 CDS TA11480 3862362 1921082..1922416 2 1 NC_011099.1 chr2.C.cand.517 - hypothetical protein, signal peptide; Signal peptide predicted for TA11480 by SignalP 2.0 HMM (Signal peptide probability 0.622, signal anchor probability 0.000) with cleavage site probability 0.493 between residues 22 and 23; SfiI-subtelomeric fragment related protein family member, putative 1922416 3862362 TA11480 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952686.1 1921082 D 5874 CDS TA11425 3861771 complement(1922938..1927521) 2 1 NC_011099.1 10 probable transmembrane helices predicted for TA11425 by TMHMM2.0 at aa 141-163, 175-197, 290-312, 319-341, 398-420, 839-861, 906-928, 974-993, 997-1019 and 1080-1102; ABC-transporter protein family, putative 1927521 3861771 TA11425 Theileria annulata ABC-transporter protein family, putative XP_952687.1 1922938 R 5874 CDS TA11420 3861770 join(1928676..1929958,1929998..1930435,1930481..1930894,1930928..1931633) 2 1 NC_011099.1 Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA11420 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA11420 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.606 between residues 22 and 23; uncharacterized protein 1931633 3861770 TA11420 Theileria annulata uncharacterized protein XP_952688.1 1928676 D 5874 CDS TA11415 3861769 1932888..1934876 2 1 NC_011099.1 Contains a putative signal peptide; SfiI-subtelomeric fragment related protein family member, putative 1934876 3861769 TA11415 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952689.1 1932888 D 5874 CDS TA11410 3861768 1935169..1936044 2 1 NC_011099.1 contains a putative signal peptide; 1 probable transmembrane helix predicted for TA11410 by TMHMM2.0 at aa 257-276; Signal peptide predicted for TA11410 by SignalP 2.0 HMM (Signal peptide probability 0.835, signal anchor probability 0.000) with cleavage site probability 0.828 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 1936044 3861768 TA11410 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952690.1 1935169 D 5874 CDS TA11405 3861767 1936306..1937631 2 1 NC_011099.1 Contains a putative signal peptide; subtelomeric sfi-fragment-related protein family member, putative 1937631 3861767 TA11405 Theileria annulata subtelomeric sfi-fragment-related protein family member, putative XP_952691.1 1936306 D 5874 CDS TA11400 3861766 1938366..1940765 2 1 NC_011099.1 Contains a putatice signal peptide; Signal peptide predicted for TA11400 by SignalP 2.0 HMM (Signal peptide probability 0.717, signal anchor probability 0.000) with cleavage site probability 0.704 between residues 20 and 21; SfiI-subtelomeric fragment related protein family member, putative 1940765 3861766 TA11400 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952692.1 1938366 D 5874 CDS TA11395 3861765 1941191..1942687 2 1 NC_011099.1 Contains a putative signal peptide; Theileria-specific sub-telomeric protein, SVSP family, putative 1942687 3861765 TA11395 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952693.1 1941191 D 5874 CDS TA11390 3861764 1942993..1944585 2 1 NC_011099.1 signal peptide, telomeric PQ rich family protein; 1 probable transmembrane helix predicted for TA11390 by TMHMM2.0 at aa 494-516; Signal peptide predicted for TA11390 by SignalP 2.0 HMM (Signal peptide probability 0.930, signal anchor probability 0.000) with cleavage site probability 0.918 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 1944585 3861764 TA11390 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952694.1 1942993 D 5874 CDS TA11385 3861763 1945039..1947288 2 1 NC_011099.1 chr2.C.cand.525 - partial P,Q-rich family; Signal peptide predicted for TA11385 by SignalP 2.0 HMM (Signal peptide probability 0.701, signal anchor probability 0.000) with cleavage site probability 0.690 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 1947288 3861763 TA11385 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952695.1 1945039 D 5874 CDS TA09420 3861756 1947519..1948880 2 1 NC_011099.1 Tap387d05.p1c.cand.2 - score = 20.90; Theileria-specific sub-telomeric protein, SVSP family, putative 1948880 3861756 TA09420 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952696.1 1947519 D 5874 CDS TA09425 3861757 1949082..1950743 2 1 NC_011099.1 Tap387d05.p1c.cand.3 - score = 20.68; SMART 1 transmembrane domain at aa 13-35; 1 probable transmembrane helix predicted for TA09425 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09425 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.754) with cleavage site probability 0.001 between residues 40 and 41; Theileria-specific sub-telomeric protein, SVSP family, putative 1950743 3861757 TA09425 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952697.1 1949082 D 5874 CDS TA09430 3861758 1950994..1952640 2 1 NC_011099.1 Tap387d05.p1c.cand.4 - score = 31.52; Signal peptide predicted for TA09430 by SignalP 2.0 HMM (Signal peptide probability 0.895, signal anchor probability 0.076) with cleavage site probability 0.454 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 1952640 3861758 TA09430 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952698.1 1950994 D 5874 CDS TA09435 3861759 1953343..1954290 2 1 NC_011099.1 Tap387d05.p1c.cand.5 - score = 16.83; Theileria-specific sub-telomeric protein, SVSP family, putative 1954290 3861759 TA09435 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952699.1 1953343 D 5874 CDS TA09440 3861760 complement(join(1954963..1955118,1955146..1959120)) 2 1 NC_011099.1 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA09440 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA09440 by SignalP 2.0 HMM (Signal peptide probability 0.319, signal anchor probability 0.674) with cleavage site probability 0.117 between residues 25 and 26; uncharacterized protein 1959120 3861760 TA09440 Theileria annulata uncharacterized protein XP_952700.1 1954963 R 5874 CDS TA09445 3861761 1961396..1964125 2 1 NC_011099.1 Tap387d05.p1c.cand.6 - score = 49.56; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA09445 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA09445 by SignalP 2.0 HMM (Signal peptide probability 0.319, signal anchor probability 0.674) with cleavage site probability 0.117 between residues 25 and 26; uncharacterized protein 1964125 3861761 TA09445 Theileria annulata uncharacterized protein XP_952701.1 1961396 D 5874 CDS TA09450 3861762 1967600..1976875 2 1 NC_011099.1 Tap387d05.p1c.cand.7 - score = 196.75; Signal peptide predicted for TA09450 by SignalP 2.0 HMM (Signal peptide probability 0.770, signal anchor probability 0.001) with cleavage site probability 0.657 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 1976875 3861762 TA09450 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952702.1 1967600 D 5874 CDS TA17565 3864585 complement(2557..6069) 3 1 NC_011100.1 TapBAC24e05.p1k.cand.5 - score = 89.63; SfiI-subtelomeric fragment related protein family member, putative 6069 3864585 TA17565 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954719.1 2557 R 5874 CDS TA17560 3864584 complement(join(7552..7860,7919..8335)) 3 1 NC_011100.1 TapBAC24e05.p1k.cand.4 - score = 10.34; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA17560 by TMHMM2.0 at aa 5-27; Signal anchor predicted for TA17560 by SignalP 2.0 HMM (Signal peptide probability 0.319, signal anchor probability 0.674) with cleavage site probability 0.117 between residues 25 and 26; uncharacterized protein 8335 3864584 TA17560 Theileria annulata uncharacterized protein XP_954720.1 7552 R 5874 CDS TA17555 3864583 9537..11222 3 1 NC_011100.1 TapBAC24e05.p1k.C.cand.2 - score = 35.12; SMART 1 transmembrane domain at aa 13-30; 1 probable transmembrane helix predicted for TA17555 by TMHMM2.0 at aa 13-30; Signal anchor predicted for TA17555 by SignalP 2.0 HMM (Signal peptide probability 0.004, signal anchor probability 0.714) with cleavage site probability 0.004 between residues 30 and 31; Theileria-specific sub-telomeric protein, SVSP family, putative 11222 3864583 TA17555 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_954721.1 9537 D 5874 CDS TA17550 3864582 11545..13278 3 1 NC_011100.1 TapBAC24e05.p1k.C.cand.3 - score = 27.84; Signal peptide predicted for TA17550 by SignalP 2.0 HMM (Signal peptide probability 0.981, signal anchor probability 0.017) with cleavage site probability 0.579 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 13278 3864582 TA17550 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_954722.1 11545 D 5874 CDS TA17545 3864581 complement(14073..15323) 3 1 NC_011100.1 note; TapBAC24e05.p1k.cand.3 - score = 20.67; Signal peptide predicted for TA17545 by SignalP 2.0 HMM (Signal peptide probability 0.891, signal anchor probability 0.087) with cleavage site probability 0.866 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative 15323 3864581 TA17545 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_954723.1 14073 R 5874 CDS TA17540 3864580 complement(15865..17595) 3 1 NC_011100.1 note; TapBAC24e05.p1k.cand.2 - score = 24.02; Signal peptide predicted for TA17540 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.019) with cleavage site probability 0.925 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative 17595 3864580 TA17540 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_954724.1 15865 R 5874 CDS TA17535 3864579 complement(17903..20356) 3 1 NC_011100.1 TapBAC24e05.p1k.cand.1 - score = 29.29; Signal peptide predicted for TA17535 by SignalP 2.0 HMM (Signal peptide probability 0.951, signal anchor probability 0.026) with cleavage site probability 0.914 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative 20356 3864579 TA17535 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_954725.1 17903 R 5874 CDS TA02740 3864974 complement(20629..22206) 3 1 NC_011100.1 Tap-140g05.q1c.cand.33 - score = 28.44; Signal peptide predicted for TA02740 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.019) with cleavage site probability 0.925 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative 22206 3864974 TA02740 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_954726.1 20629 R 5874 CDS TA02735 3864973 complement(22651..23256) 3 1 NC_011100.1 Tap-140g05.q1c.cand.32 - score = 12.13; SfiI-subtelomeric fragment related protein family member, putative 23256 3864973 TA02735 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954727.1 22651 R 5874 CDS TA02730 3864972 join(24527..28616,28716..29101) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.1 - score = 55.24; SMART 7 transmembrane domains at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423 and 438-460; 2 AAA (SM0382) domains at aa 549-753, E()=1.64e-03; 1265-1449, E()=1.55e-01; pfam:ABC_membrane (PF00664) at aa 848-1132, E()=8.30e-02; 12 probable transmembrane helices predicted for TA02730 by TMHMM2.0 at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423, 438-460, 838-860, 901-923, 959-981, 996-1018 and 1083-1105; ABC transporter, putative 29101 3864972 TA02730 Theileria annulata ABC transporter, putative XP_954728.1 24527 D 5874 CDS TA02725 3864971 complement(join(29567..31187,31227..32503)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.30 - score = 53.79; 1 probable transmembrane helix predicted for TA02725 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA02725 by SignalP 2.0 HMM (Signal peptide probability 0.846, signal anchor probability 0.115) with cleavage site probability 0.569 between residues 22 and 23; uncharacterized protein 32503 3864971 TA02725 Theileria annulata uncharacterized protein XP_954729.1 29567 R 5874 CDS TA02720 3864970 34684..39261 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.2 - score = 59.78; SMART 12 transmembrane domains at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423, 438-460, 838-860, 901-923, 959-981, 996-1018 and 1083-1105; 2 AAA (SM0382) at aa 549-753, E()=1.89e-03; 1265-1496, E()=1.12e-01; 12 probable transmembrane helices predicted for TA02720 by TMHMM2.0 at aa 140-162, 175-197, 273-292, 299-318, 328-350, 401-423, 438-460, 838-860, 901-923, 959-981, 996-1018 and 1083-1105; ABC protein, putative 39261 3864970 TA02720 Theileria annulata ABC protein, putative XP_954730.1 34684 D 5874 CDS TA02715 3864969 complement(40013..42766) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.28 - score = 52.92; 1 probable transmembrane helix predicted for TA02715 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA02715 by SignalP 2.0 HMM (Signal peptide probability 0.937, signal anchor probability 0.063) with cleavage site probability 0.452 between residues 21 and 22; uncharacterized protein 42766 3864969 TA02715 Theileria annulata uncharacterized protein XP_954731.1 40013 R 5874 CDS TA02710 3864968 complement(43716..44426) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.27 - score = 14.52; 1 probable transmembrane helix predicted for TA02710 by TMHMM2.0 at aa 7-29; Signal anchor predicted for TA02710 by SignalP 2.0 HMM (Signal peptide probability 0.295, signal anchor probability 0.686) with cleavage site probability 0.216 between residues 20 and 21; uncharacterized protein 44426 3864968 TA02710 Theileria annulata uncharacterized protein XP_954732.1 43716 R 5874 CDS TA02705 3864967 complement(45379..46116) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.26 - score = 14.61; uncharacterized protein 46116 3864967 TA02705 Theileria annulata uncharacterized protein XP_954733.1 45379 R 5874 CDS TA02700 3864966 complement(join(46547..46774,46821..46913,46944..47155,47186..47366,47399..47498,47561..47755,47791..47855,47886..48031,48107..48347)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.25 - score = 36.59; SMART pfam:Ribosomal_L15 (PF01305) at aa 264-369, E()=1.40e-21; Signal peptide predicted for TA02700 by SignalP 2.0 HMM (Signal peptide probability 0.646, signal anchor probability 0.022) with cleavage site probability 0.573 between residues 16 and 17; ribosomal protein L15, putative 48347 3864966 TA02700 Theileria annulata ribosomal protein L15, putative XP_954734.1 46547 R 5874 CDS TA02695 3864965 48428..48922 3 1 NC_011100.1 SMART 1 transmembrane domain at aa 13-35; pfam:Ribosomal_L17 (PF01196) at aa 64-162, E()=7.10e-15; 1 probable transmembrane helix predicted for TA02695 by TMHMM2.0 at aa 13-35; 50S ribosomal protein L17, putative 48922 3864965 TA02695 Theileria annulata 50S ribosomal protein L17, putative XP_954735.1 48428 D 5874 CDS TA02690 3864964 complement(join(49015..49111,49167..49310,49364..49470,49526..49649,49693..50222,50350..50800,50867..51273,51340..51456)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.24 - score = 32.04; uncharacterized protein 51456 3864964 TA02690 Theileria annulata uncharacterized protein XP_954736.1 49015 R 5874 CDS TA02685 3864963 complement(join(51685..51790,51863..52086,52162..52600,52679..52755,52937..52996,53028..53147)) 3 1 NC_011100.1 chromodomain protein (HP1-like), putative 53147 3864963 TA02685 Theileria annulata chromodomain protein (HP1-like), putative XP_954737.1 51685 R 5874 CDS TA02680 3865137 complement(join(53488..53797,53834..53952,54019..54123,54170..54334,54455..55015)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.22 - score = 31.54; uncharacterized protein 55015 3865137 TA02680 Theileria annulata uncharacterized protein XP_954738.1 53488 R 5874 CDS TA02675 3865136 join(55085..55145,55240..55332,55549..55736,55794..55880,55922..56094,56141..56451,56485..56633,56721..56861,56893..56934,57005..57166) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.3 - score = 34.85; SMART RPOLCX (SM0659) at aa 15-58, E()=5.93e-14; uncharacterized protein 57166 3865136 TA02675 Theileria annulata uncharacterized protein XP_954739.1 55085 D 5874 CDS TA02670 3865135 complement(57250..58284) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.21 - score = 22.05; uncharacterized protein 58284 3865135 TA02670 Theileria annulata uncharacterized protein XP_954740.1 57250 R 5874 CDS TA02665 3865134 join(58611..58649,58683..58787,58822..58933,59003..59207,59246..59401,59433..59688) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.4 - score = 22.84; SMART methyltransferase domains; methyltransferase (HUSSY homologue), putative 59688 3865134 TA02665 Theileria annulata methyltransferase (HUSSY homologue), putative XP_954741.1 58611 D 5874 CDS TA02660 3865133 complement(join(59818..59871,59902..59967,60017..60053,60109..60177,60212..60279,60372..60444,60476..60512,60581..60672,60722..60771,60861..60917,60948..60979,61021..61176,61250..61298,61366..62124,62176..62337)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.20 - score = 62.64; SMART pfam:Exo_endo_phos (PF03372) at aa 275-588, E()=2.30e-08; endonuclease, putative 62337 3865133 TA02660 Theileria annulata endonuclease, putative XP_954742.1 59818 R 5874 CDS TA02655 3865132 62756..63745 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.5 - score = 18.17; uncharacterized protein 63745 3865132 TA02655 Theileria annulata uncharacterized protein XP_954743.1 62756 D 5874 CDS TA02650 3865131 complement(join(63806..63973,64032..64133,64168..64313,64349..64474,64559..64619,64652..64803,64835..65114)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.19 - score = 37.45; SMART DNAJ (SM0271) at aa 121-191, E()=2.82e-13; molecular chaperone, possible 65114 3865131 TA02650 Theileria annulata molecular chaperone, possible XP_954744.1 63806 R 5874 CDS TA02645 3865130 complement(join(65381..65524,65567..65689,65742..65888,66000..66008)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.18 - score = 10.67; SMART UBCc (SM0212) at aa 10-140, E()=9.73e-05; ubiquitin-conjugating enzyme (MMS homologue), putative 66008 3865130 TA02645 Theileria annulata ubiquitin-conjugating enzyme (MMS homologue), putative XP_954745.1 65381 R 5874 CDS TA02640 3865129 complement(join(66161..66637,66729..66809,66848..67030)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.17 - score = 20.69; SMART CPDc (SM0577) at aa 61-203, E()=9.67e-53; RNA polymerase II carboxyterminal domain (CTD) phosphatase, putative 67030 3865129 TA02640 Theileria annulata RNA polymerase II carboxyterminal domain (CTD) phosphatase, putative XP_954746.1 66161 R 5874 CDS TA02635 3865128 join(67580..67653,67721..67810,67875..68085) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.6 - score = 7.66; SMART pfam:RNA_pol_L (PF01193) at aa 24-114, E()=2.90e-11; 1 probable transmembrane helix predicted for TA02635 by TMHMM2.0 at aa 104-123; DNA-directed RNA polymerase II, putative 68085 3865128 TA02635 Theileria annulata DNA-directed RNA polymerase II, putative XP_954747.1 67580 D 5874 CDS TA02630 3865127 join(68495..70187,70350..70409,70441..70935,71015..71056,71088..71296,71329..71772,71873..71968) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.7 - score = 68.68; uncharacterized protein 71968 3865127 TA02630 Theileria annulata uncharacterized protein XP_954748.1 68495 D 5874 CDS TA02625 3865126 complement(72104..73351) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.16 - score = 24.78; uncharacterized protein 73351 3865126 TA02625 Theileria annulata uncharacterized protein XP_954749.1 72104 R 5874 CDS TA02620 3865125 74708..75481 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.8 - score = 16.55; Signal peptide predicted for TA02620 by SignalP 2.0 HMM (Signal peptide probability 0.966, signal anchor probability 0.000) with cleavage site probability 0.769 between residues 16 and 17; uncharacterized protein 75481 3865125 TA02620 Theileria annulata uncharacterized protein XP_954750.1 74708 D 5874 CDS TA02615 3865124 75756..76658 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.9 - score = 9.03; uncharacterized protein 76658 3865124 TA02615 Theileria annulata uncharacterized protein XP_954751.1 75756 D 5874 CDS TA02610 3865123 complement(join(76742..76923,76993..77210,77297..77397,77428..77514,77596..77801,77855..77983,78049..78177,78279..78552)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.15 - score = 24.26; SMART pfam:V-ATPase_H (PF03224) at aa 10-384, E()=1.50e-04; vacuolar ATP synthase subunit h, putative 78552 3865123 TA02610 Theileria annulata vacuolar ATP synthase subunit h, putative XP_954752.1 76742 R 5874 CDS TA02605 3865122 complement(join(78780..79153,79210..79260,79290..79350,79423..79584,79615..79786,79816..79895,79962..80172,80210..80280)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.14 - score = 52.27; uncharacterized protein 80280 3865122 TA02605 Theileria annulata uncharacterized protein XP_954753.1 78780 R 5874 CDS TA02600 3865121 join(80484..80571,80631..80882,80954..81348,81401..81706) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.10 - score = 24.80; SMART 2 RRM (SM0360) at aa 51-125, E()=5.13e-12 and 250-312, E()=6.87e-01; U1 snRNP protein, putative 81706 3865121 TA02600 Theileria annulata U1 snRNP protein, putative XP_954754.1 80484 D 5874 CDS TA02595 3865120 complement(join(81874..81979,82010..82172,82223..82355,82428..82493,82524..82544)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.13 - score = 28.84; SMART S1 (SM0316) at aa 11-95, E()=1.73e+00; uncharacterized protein 82544 3865120 TA02595 Theileria annulata uncharacterized protein XP_954755.1 81874 R 5874 CDS TA02590 3865119 complement(82763..83845) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.13 - score = 28.84; Signal peptide predicted for TA02590 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.000) with cleavage site probability 0.721 between residues 18 and 19; GPI-Anchor Signal predicted for TA02590 by DGPI v2.04 with cleavage site probability 0.172 near 339; uncharacterized protein 83845 3865119 TA02590 Theileria annulata uncharacterized protein XP_954756.1 82763 R 5874 CDS TA02585 3865118 complement(84218..84754) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.12 - score = 16.66; Signal peptide predicted for TA02585 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.000) with cleavage site probability 0.721 between residues 18 and 19; GPI-Anchor Signal predicted for TA02585 by DGPI v2.04 with cleavage site probability 0.49879998 near 157; uncharacterized protein 84754 3865118 TA02585 Theileria annulata uncharacterized protein XP_954757.1 84218 R 5874 CDS TA02580 3865097 complement(84821..85885) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.11 - score = 26.39; Signal peptide predicted for TA02580 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.000) with cleavage site probability 0.824 between residues 19 and 20; GPI-Anchor Signal predicted for TA02580 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 85885 3865097 TA02580 Theileria annulata uncharacterized protein XP_954758.1 84821 R 5874 CDS TA02575 3865096 join(86798..86911,86942..87013,87044..87231,87327..87522,87617..88101,88197..88488) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.11 - score = 30.75; uncharacterized protein 88488 3865096 TA02575 Theileria annulata uncharacterized protein XP_954759.1 86798 D 5874 CDS TA02570 3865095 complement(join(88623..88998,89094..89241,89275..89386)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.10 - score = 15.69; uncharacterized protein 89386 3865095 TA02570 Theileria annulata uncharacterized protein XP_954760.1 88623 R 5874 CDS TA02565 3865094 complement(89617..90573) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.9 - score = 20.92; SMART 3 WD40 (SM0320) domains at aa 56-96, E()=9.51e+01; 149-197, E()=5.10e-06; 220-262, E()=2.38e+01; transport protein (SEC13 homologue), putative 90573 3865094 TA02565 Theileria annulata transport protein (SEC13 homologue), putative XP_954761.1 89617 R 5874 CDS TA02560 3865093 join(90931..90949,91088..92304,92406..92666) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.12 - score = 20.62; SMART 4 transmembrane domains at aa 265-287, 302-324, 358-376 and 391-413; 4 probable transmembrane helices predicted for TA02560 by TMHMM2.0 at aa 265-287, 302-324, 358-376 and 391-413; uncharacterized protein 92666 3865093 TA02560 Theileria annulata uncharacterized protein XP_954762.1 90931 D 5874 CDS TA02555 3865092 join(92812..93096,93181..93513,93600..93818) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.13 - score = 19.72; 26S proteasome regulatory subunit, putative 93818 3865092 TA02555 Theileria annulata 26S proteasome regulatory subunit, putative XP_954763.1 92812 D 5874 CDS TA02550 3865091 complement(join(93868..94274,94349..94961,95036..95179)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.8 - score = 26.68; SMART S_TKc (SM0220) at aa 15-319, E()=3.68e-81; glycogen synthase kinase, putative 95179 3865091 TA02550 Theileria annulata glycogen synthase kinase, putative XP_954764.1 93868 R 5874 CDS TA02545 3865090 join(96264..96303,96529..96773,96887..97862,97937..98254,98342..98602,98655..98828,98891..98985,99049..99625,99654..100379,100493..100771,100859..101108,101174..101711,101840..102463) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.14 - score = 105.54; SMART pfam:CSPase_sm_chain (PF00988) at aa 19-180, E()=8.50e-63; pfam:GATase (PF00117) at aa 293-472, E()=3.50e-29; 2 pfam:CSPase_L_chain (PF00289) at aa 503-623, E()=1.40e-51; 1136-1250, E()=1.90e-12; pfam:CPSase_L_D2 (PF02786) at aa 625-865, E()=6.90e-112; pfam:CPSase_L_D3 (PF02787) at aa 943-1082, E()=8.50e-43; pfam:Dala_Dala_ligas (PF01820) at aa 1148-1448, E()=2.00e-02; pfam:MGS (PF2141) at aa 1521-1661, E()=9.20e-03; carbamoyl phosphate synthase II, putative 102463 3865090 TA02545 Theileria annulata carbamoyl phosphate synthase II, putative XP_954765.1 96264 D 5874 CDS TA02540 3865089 102898..103923 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.15 - score = 19.25; SMART pfam:NUDIX (PF00293) at aa 104-231, E()=9.70e-14; uncharacterized protein 103923 3865089 TA02540 Theileria annulata uncharacterized protein XP_954766.1 102898 D 5874 CDS TA02535 3865088 join(104360..104539,104650..104802,104904..105038) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.16 - score = 11.10; 60S ribosomal L24 protein, putative 105038 3865088 TA02535 Theileria annulata 60S ribosomal L24 protein, putative XP_954767.1 104360 D 5874 CDS TA02530 3865087 complement(join(105224..105726,105780..105843)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.7 - score = 15.68; uncharacterized protein 105843 3865087 TA02530 Theileria annulata uncharacterized protein XP_954768.1 105224 R 5874 CDS TA02525 3865086 complement(join(106275..106356,106486..106652)) 3 1 NC_011100.1 SMART pfam:Ribosomal_S27e (PF01667) at aa 26-80, E()=6.30e-26; 40S ribosomal protein S27, putative 106652 3865086 TA02525 Theileria annulata 40S ribosomal protein S27, putative XP_954769.1 106275 R 5874 CDS TA02520 3865085 complement(join(108128..108579,108696..109809)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.6 - score = 25.76; uncharacterized protein 109809 3865085 TA02520 Theileria annulata uncharacterized protein XP_954770.1 108128 R 5874 CDS TA02515 3865084 complement(join(109935..110274,110328..111100,111174..111275,111347..111811)) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.5 - score = 43.61; uncharacterized protein 111811 3865084 TA02515 Theileria annulata uncharacterized protein XP_954771.1 109935 R 5874 CDS TA02510 3865083 complement(join(112231..112766,112830..112915,112949..113001,113079..113235,113270..113309,113384..113508,113927..113979,114015..114545)) 3 1 NC_011100.1 Tap-140g05.q1c.cand.5 - score = 43.61; SMART pfam:asp (PF00026) at aa 89-485, E()=1.50e-66; 1 probable transmembrane helix predicted for TA02510 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA02510 by SignalP 2.0 HMM (Signal peptide probability 0.650, signal anchor probability 0.310) with cleavage site probability 0.488 between residues 25 and 26; aspartyl protease precursor, putative 114545 3865083 TA02510 Theileria annulata aspartyl protease precursor, putative XP_954772.1 112231 R 5874 CDS TA02505 3865082 115036..116355 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.17 - score = 21.11; 1 probable transmembrane helix predicted for TA02505 by TMHMM2.0 at aa 7-29; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative 116355 3865082 TA02505 Theileria annulata 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative XP_954773.1 115036 D 5874 CDS TA02500 3865081 join(116746..116890,117044..117111,117150..117236,117340..117420,117488..117547,117722..117808) 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.18 - score = 19.46; SMART 4 EFh (SM0054) domains at aa 35-63, E()=1.24e-06; 71-99, E()=9.11e-05; 108-136, E()=8.25e+00; 144-712, E()=1.42e-06; centrin, putative 117808 3865081 TA02500 Theileria annulata centrin, putative XP_954774.1 116746 D 5874 CDS TA02495 3865080 118251..121631 3 1 NC_011100.1 note; Tap-140g05.q1c.C.cand.19 - score = 170.27; uncharacterized protein 121631 3865080 TA02495 Theileria annulata uncharacterized protein XP_954775.1 118251 D 5874 CDS TA02490 3865079 join(122818..123275,123309..123776,123842..124717,124748..124855,124903..124982,125065..125633,125666..125941) 3 1 NC_011100.1 Tap-140g05.q1c.C.cand.19 - score = 170.27; ribosome biogenesis protein (BMS1 homologue), putative 125941 3865079 TA02490 Theileria annulata ribosome biogenesis protein (BMS1 homologue), putative XP_954776.1 122818 D 5874 CDS TA02485 3864752 complement(126075..127496) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.2 - score = 18.79; SMART pfam:sugar_tr (PF00083) at aa 12-472, E()=4.60e-62; 12 probable transmembrane helices predicted for TA02485 by TMHMM2.0 at aa 7-29, 58-80, 92-114, 119-138, 145-167, 193-215, 278-300, 315-337, 344-362, 377-399, 412-434 and 438-460; Signal peptide predicted for TA02485 by SignalP 2.0 HMM (Signal peptide probability 0.974, signal anchor probability 0.022) with cleavage site probability 0.648 between residues 28 and 29; hexose transporter (HT1 homologue), putative 127496 3864752 TA02485 Theileria annulata hexose transporter (HT1 homologue), putative XP_954777.1 126075 R 5874 CDS TA02480 3864751 complement(128013..129434) 3 1 NC_011100.1 note; Tap-140g05.q1c.cand.1 - score = 21.12; SMART pfam:sugar_tr (PF00083) at aa 12-472, E()=1.10e-59; 12 probable transmembrane helices predicted for TA02480 by TMHMM2.0 at aa 13-32, 58-80, 92-114, 119-138, 145-167, 193-215, 278-300, 315-337, 344-362, 377-399, 412-434 and 438-460; Signal peptide predicted for TA02480 by SignalP 2.0 HMM (Signal peptide probability 0.831, signal anchor probability 0.147) with cleavage site probability 0.375 between residues 28 and 29; hexose transporter (HT1 homologue), putative 129434 3864751 TA02480 Theileria annulata hexose transporter (HT1 homologue), putative XP_954778.1 128013 R 5874 CDS TA03170 3864975 133188..134585 3 1 NC_011100.1 Tap-24g11.q1c.cand.1 - score = 15.00; 6 probable transmembrane helices predicted for TA03170 by TMHMM2.0 at aa 80-102, 117-137, 144-166, 202-224, 330-352 and 362-379; uncharacterized protein 134585 3864975 TA03170 Theileria annulata uncharacterized protein XP_954779.1 133188 D 5874 CDS TA03175 3864976 complement(join(134615..134893,134923..134986,135015..135178,135217..135324,135355..135513,135555..135738,135768..136053,136086..136405,136436..136509,136544..136735,136779..137033)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.235 - score = 58.41; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03175 by SignalP 2.0 HMM (Signal peptide probability 0.982, signal anchor probability 0.000) with cleavage site probability 0.529 between residues 19 and 20; cysteinyl-tRNA synthetase, putative 137033 3864976 TA03175 Theileria annulata cysteinyl-tRNA synthetase, putative XP_954780.1 134615 R 5874 CDS TA03180 3864977 join(137845..137998,138030..138199,138236..138385,138417..138908,138939..139102,139281..139342,139377..139418,139450..139505,139537..139725) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.2 - score = 40.16; uncharacterized protein 139725 3864977 TA03180 Theileria annulata uncharacterized protein XP_954781.1 137845 D 5874 CDS TA03185 3864978 join(140064..140129,140222..140518) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.3 - score = 13.88; 1 probable transmembrane helix predicted for TA03185 by TMHMM2.0 at aa 76-93; uncharacterized protein 140518 3864978 TA03185 Theileria annulata uncharacterized protein XP_954782.1 140064 D 5874 CDS TA03190 3864979 join(141218..141269,141320..141400,141432..141628,141769..141984) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.4 - score = 13.32; uncharacterized protein 141984 3864979 TA03190 Theileria annulata uncharacterized protein XP_954783.1 141218 D 5874 CDS TA03195 3864980 142212..143060 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.5 - score = 23.14; uncharacterized protein 143060 3864980 TA03195 Theileria annulata uncharacterized protein XP_954784.1 142212 D 5874 CDS TA03200 3864981 join(143322..143411,143442..143559,143611..144020,144080..144206,144280..144383,144430..144563,144612..144899,145022..145115,145145..145321) 3 1 NC_011100.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03200 by SignalP 2.0 HMM (Signal peptide probabilty 0.974, signal anchor probability 0.000) with cleavage site probability 0.596 between residues 16 and 17; uncharacterized protein 145321 3864981 TA03200 Theileria annulata uncharacterized protein XP_954785.1 143322 D 5874 CDS TA03205 3865187 complement(145445..146053) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.234 - score = 16.31; uncharacterized protein 146053 3865187 TA03205 Theileria annulata uncharacterized protein XP_954786.1 145445 R 5874 CDS TA03210 3865188 146638..147216 3 1 NC_011100.1 note; Signal peptide predicted for TA03210 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.988 between residues 17 and 18; uncharacterized protein 147216 3865188 TA03210 Theileria annulata uncharacterized protein XP_954787.1 146638 D 5874 CDS TA03265 3865199 complement(join(147302..147455,147489..148044,148140..148257)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.233 - score = 20.48; extensin (proline-rich protein), putative 148257 3865199 TA03265 Theileria annulata extensin (proline-rich protein), putative XP_954788.1 147302 R 5874 CDS TA03270 3865200 join(148448..148537,148618..148734,148766..148810,148840..148903,148968..149167) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.9 - score = 18.68; uncharacterized protein 149167 3865200 TA03270 Theileria annulata uncharacterized protein XP_954789.1 148448 D 5874 CDS TA03375 3865338 complement(join(149308..149858,150000..150147,150206..151099,151345..151643,151683..151929)) 3 1 NC_011100.1 note; spliceosome-associated factor, putative 151929 3865338 TA03375 Theileria annulata spliceosome-associated factor, putative XP_954790.1 149308 R 5874 CDS TA03430 3864620 complement(join(152136..152488,152790..152984,153064..153225,153676..153778,153808..153941,154040..154139,154344..154509,154673..155328)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.230 - score = 12.58; Fumarate hydratase class I, putative 155328 3864620 TA03430 Theileria annulata Fumarate hydratase class I, putative XP_954791.1 152136 R 5874 CDS TA03435 3864621 join(156278..156509,156680..156958,157269..159002,159372..159421) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.10 - score = 12.58; 9 probable transmembrane helices predicted for TA03435 by TMHMM2.0 at aa 7-29, 96-118, 194-216, 399-418, 438-460, 480-502, 507-529, 539-561 and 673-695; uncharacterized protein 159421 3864621 TA03435 Theileria annulata uncharacterized protein XP_954792.1 156278 D 5874 CDS TA03540 3865010 complement(159457..160047) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.229 - score = 13.66; Signal peptide predicted for TA03540 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.953 between residues 17 and 18; uncharacterized protein 160047 3865010 TA03540 Theileria annulata uncharacterized protein XP_954793.1 159457 R 5874 CDS TA03595 3864851 complement(160786..161310) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.228 - score = 18.45; uncharacterized protein 161310 3864851 TA03595 Theileria annulata uncharacterized protein XP_954794.1 160786 R 5874 CDS TA03650 3864862 complement(join(163140..163558,163590..166386)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.227 - score = 63.03; uncharacterized protein 166386 3864862 TA03650 Theileria annulata uncharacterized protein XP_954795.1 163140 R 5874 CDS TA03705 3864598 complement(166858..167709) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.226 - score = 20.08; uncharacterized protein 167709 3864598 TA03705 Theileria annulata uncharacterized protein XP_954796.1 166858 R 5874 CDS TA03710 3864599 168197..169321 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.11 - score = 19.71; uncharacterized protein 169321 3864599 TA03710 Theileria annulata uncharacterized protein XP_954797.1 168197 D 5874 CDS TA03765 3864610 join(170059..172150,172253..172548) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.12 - score = 40.59; glutamate-cysteine ligase, putative 172548 3864610 TA03765 Theileria annulata glutamate-cysteine ligase, putative XP_954798.1 170059 D 5874 CDS TA03820 3864837 join(172779..173210,173901..174485) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.13 - score = 18.25; uncharacterized protein 174485 3864837 TA03820 Theileria annulata uncharacterized protein XP_954799.1 172779 D 5874 CDS TA03875 3864848 join(176832..176888,177042..177128,177263..177369,177505..177592,177708..177899) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.14 - score = 9.29; 1 probable transmembrane helix predicted for TA03875 by TMHMM2.0 at aa 153-175; RNA poly(A)-binding protein, putative 177899 3864848 TA03875 Theileria annulata RNA poly(A)-binding protein, putative XP_954800.1 176832 D 5874 CDS TA03930 3864781 178947..179870 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.15 - score = 17.09; uncharacterized protein 179870 3864781 TA03930 Theileria annulata uncharacterized protein XP_954801.1 178947 D 5874 CDS TA03985 3865208 join(180883..181069,181206..182083) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.16 - score = 10.29; lipoate protein ligase, putative 182083 3865208 TA03985 Theileria annulata lipoate protein ligase, putative XP_954802.1 180883 D 5874 CDS TA04090 3865386 complement(join(182826..183139,183297..183642,183825..184087,184281..184350,184368..184526,185563..185720,185807..185952,186221..186369,186400..186507,186843..186976,187016..187112)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.225 - score = 69.25; 3 probable transmembrane helices predicted for TA04090 by TMHMM2.0 at aa 7-25, 528-550 and 563-585; cytochrome reductase, putative 187112 3865386 TA04090 Theileria annulata cytochrome reductase, putative XP_954803.1 182826 R 5874 CDS TA04145 3865397 complement(join(187209..187526,187724..188840,189251..191292)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.225 - score = 69.25; 0506. Phat adopted as slightly better fasta results; uncharacterized protein 191292 3865397 TA04145 Theileria annulata uncharacterized protein XP_954804.1 187209 R 5874 CDS TA04150 3865398 join(192204..192314,192466..192694,192755..193041) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.17 - score = 14.96; uncharacterized protein 193041 3865398 TA04150 Theileria annulata uncharacterized protein XP_954805.1 192204 D 5874 CDS TA04205 3865029 join(198323..198438,198545..198771,199182..199481,199676..200172,200667..201029) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.19 - score = 8.55; RhoGAP protein, putative 201029 3865029 TA04205 Theileria annulata RhoGAP protein, putative XP_954806.1 198323 D 5874 CDS TA04310 3864801 complement(join(201574..201666,202098..202216,202518..202743,203029..203232,204172..204294)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.224 - score = 6.85; 4-methyl-5(b-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme, putative 204294 3864801 TA04310 Theileria annulata 4-methyl-5(b-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme, putative XP_954807.1 201574 R 5874 CDS TA04315 3864802 join(205386..206405,206713..206986,207283..208364) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.22 - score = 34.00; uncharacterized protein 208364 3864802 TA04315 Theileria annulata uncharacterized protein XP_954808.1 205386 D 5874 CDS TA04420 3865239 complement(209351..209956) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.223 - score = 15.57; uncharacterized protein 209956 3865239 TA04420 Theileria annulata uncharacterized protein XP_954809.1 209351 R 5874 CDS TA04425 3865240 join(210165..210314,210400..210676,211165..211313) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.23 - score = 6.87; ribosomal protein L18, putative 211313 3865240 TA04425 Theileria annulata ribosomal protein L18, putative XP_954810.1 210165 D 5874 CDS TA04480 3865270 211671..214340 3 1 NC_011100.1 uncharacterized protein 214340 3865270 TA04480 Theileria annulata uncharacterized protein XP_954811.1 211671 D 5874 CDS TA04585 3864895 complement(215434..217485) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.222 - score = 27.91; syntaxin binding protein 2, putative 217485 3864895 TA04585 Theileria annulata syntaxin binding protein 2, putative XP_954812.1 215434 R 5874 CDS TA04640 3864906 complement(218746..222084) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.221 - score = 49.38; 13 probable transmembrane helices predicted for TA04640 by TMHMM2.0 at aa 52-74, 89-111, 132-154, 159-181, 188-207, 222-244, 251-270, 275-297, 304-326, 485-504, 590-608, 613-630 and 637-656; uncharacterized protein 222084 3864906 TA04640 Theileria annulata uncharacterized protein XP_954813.1 218746 R 5874 CDS TA04645 3864907 join(222622..223030,223089..223297,223847..223984,224453..224583,224692..224758,224962..225108,225593..225674,225851..226035,226169..226249,227114..227210,227310..227578) 3 1 NC_011100.1 thioredoxin reductase, putative 227578 3864907 TA04645 Theileria annulata thioredoxin reductase, putative XP_954814.1 222622 D 5874 CDS TA04700 3865371 join(227703..228363,229135..230561,230926..231039) 3 1 NC_011100.1 uncharacterized protein 231039 3865371 TA04700 Theileria annulata uncharacterized protein XP_954815.1 227703 D 5874 CDS TA04805 3865296 complement(join(231329..231777,231806..231881)) 3 1 NC_011100.1 uncharacterized protein 231881 3865296 TA04805 Theileria annulata uncharacterized protein XP_954816.1 231329 R 5874 CDS TA04860 3864930 complement(join(233254..233658,233767..234235,234266..234540,234574..234741)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.219 - score = 25.13; uncharacterized protein 234741 3864930 TA04860 Theileria annulata uncharacterized protein XP_954817.1 233254 R 5874 CDS TA04915 3864941 complement(234837..236783) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.218 - score = 29.59; 10 probable transmembrane helices predicted for TA04915 by TMHMM2.0 at aa 13-35, 48-70, 224-246, 256-278, 285-307, 322-344, 383-405, 478-500, 521-543 and 547-569; Tpr-related protein family member, putative 236783 3864941 TA04915 Theileria annulata Tpr-related protein family member, putative XP_954818.1 234837 R 5874 CDS TA04970 3864696 complement(236908..238338) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.217 - score = 17.92; 11 probable transmembrane helices predicted for TA04970 by TMHMM2.0 at aa 24-46, 75-97, 129-151, 163-185, 190-212, 225-247, 280-302, 315-334, 354-376, 397-419 and 424-446; Tpr-related protein family member, putative 238338 3864696 TA04970 Theileria annulata Tpr-related protein family member, putative XP_954819.1 236908 R 5874 CDS TA04975 3864697 join(238991..239025,239055..239169,239199..239264) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.27 - score = 12.87; uncharacterized protein 239264 3864697 TA04975 Theileria annulata uncharacterized protein XP_954820.1 238991 D 5874 CDS TA05080 3864738 complement(join(239338..239469,239503..239583,239614..239776,239808..239918,239968..240032)) 3 1 NC_011100.1 ADP-ribosylation factor, putative 240032 3864738 TA05080 Theileria annulata ADP-ribosylation factor, putative XP_954821.1 239338 R 5874 CDS TA05135 3864749 complement(join(240287..242097,242240..242363,242393..242416)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.216 - score = 30.30; 11 probable transmembrane helices predicted for TA05135 by TMHMM2.0 at aa 32-51, 66-88, 116-138, 142-164, 185-207, 217-236, 289-311, 326-348, 361-383, 387-409 and 626-648; GPI-Anchor Signal predicted for TA05135 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 242416 3864749 TA05135 Theileria annulata uncharacterized protein XP_954822.1 240287 R 5874 CDS TA05140 3864750 join(242435..242848,242881..242925,243021..243308) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.29 - score = 11.70; uncharacterized protein 243308 3864750 TA05140 Theileria annulata uncharacterized protein XP_954823.1 242435 D 5874 CDS TA05195 3864565 243336..245777 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.30 - score = 37.26; 2 probable transmembrane helices predicted for TA05195 by TMHMM2.0 at aa 76-98 and 701-723; uncharacterized protein 245777 3864565 TA05195 Theileria annulata uncharacterized protein XP_954824.1 243336 D 5874 CDS TA05260 3864873 complement(245823..246224) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.215 - score = 10.74; uncharacterized protein 246224 3864873 TA05260 Theileria annulata uncharacterized protein XP_954825.1 245823 R 5874 CDS TA05265 3864874 complement(join(246455..246812,246949..248591)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.214 - score = 39.09; 1 probable transmembrane helix predicted for TA05265 by TMHMM2.0 at aa 139-161; uncharacterized protein 248591 3864874 TA05265 Theileria annulata uncharacterized protein XP_954826.1 246455 R 5874 CDS TA05270 3864875 join(248678..249685,249739..249858,249891..250166) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.31 - score = 28.53; uncharacterized protein 250166 3864875 TA05270 Theileria annulata uncharacterized protein XP_954827.1 248678 D 5874 CDS TA05275 3864876 complement(join(250587..251313,251347..251599,251630..252425,252473..252540,252571..252877,252942..253140,253191..253477,253512..253654,253689..253764,253823..254032)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.213 - score = 92.63; 2-oxoglutarate dehydrogenase E1 component, putative 254032 3864876 TA05275 Theileria annulata 2-oxoglutarate dehydrogenase E1 component, putative XP_954828.1 250587 R 5874 CDS TA05280 3864877 complement(join(254269..254508,254540..254833)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.212 - score = 10.81; 4 probable transmembrane helices predicted for TA05280 by TMHMM2.0 at aa 21-43, 53-75, 82-104 and 124-146; uncharacterized protein 254833 3864877 TA05280 Theileria annulata uncharacterized protein XP_954829.1 254269 R 5874 CDS TA05285 3864878 255470..256471 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.32 - score = 22.69; uncharacterized protein 256471 3864878 TA05285 Theileria annulata uncharacterized protein XP_954830.1 255470 D 5874 CDS TA05290 3864879 256918..257421 3 1 NC_011100.1 There is small overlap at the 3' end with gene TA05295; 1 probable transmembrane helix predicted for TA05290 by TMHMM2.0 at aa 143-165; uncharacterized protein 257421 3864879 TA05290 Theileria annulata uncharacterized protein XP_954831.1 256918 D 5874 CDS TA05295 3864880 complement(join(257401..258098,258252..258767,258821..258965,259049..259176,259233..259417,259657..259893,259999..260114,260187..261650)) 3 1 NC_011100.1 There is small overlap at the 3' end with gene TA05290; global transcription activator, SNF2 family member, putative 261650 3864880 TA05295 Theileria annulata global transcription activator, SNF2 family member, putative XP_954832.1 257401 R 5874 CDS TA05300 3864881 complement(join(261876..261991,262023..262401,262509..262823,262951..263079)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.209 - score = 23.07; polyphosphoinositol binding protein, putative 263079 3864881 TA05300 Theileria annulata polyphosphoinositol binding protein, putative XP_954833.1 261876 R 5874 CDS TA05305 3864882 complement(join(264036..264162,264202..264338,264371..264457)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.208 - score = 15.41; uncharacterized protein 264457 3864882 TA05305 Theileria annulata uncharacterized protein XP_954834.1 264036 R 5874 CDS TA05310 3864883 join(264567..264669,264758..264912,264945..265058,265107..265267,265299..265998) 3 1 NC_011100.1 uncharacterized protein 265998 3864883 TA05310 Theileria annulata uncharacterized protein XP_954835.1 264567 D 5874 CDS TA05315 3864884 267811..268383 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.35 - score = 12.42; Signal peptide predicted for TA05315 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.000) with cleavage site probability 0.427 between residues 19 and 20; GPI-Anchor Signal predicted for TA05315 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 268383 3864884 TA05315 Theileria annulata uncharacterized protein XP_954836.1 267811 D 5874 CDS TA05320 3864885 268939..269502 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.36 - score = 24.03; Signal peptide predicted for TA05320 by SignalP 2.0 HMM (Signal peptide probability 0.994, signal anchor probability 0.000) with cleavage site probability 0.689 between residues 18 and 19; GPI-Anchor Signal predicted for TA05320 by DGPI v2.04 with cleavage site probability 0.74819994 near 169; uncharacterized protein 269502 3864885 TA05320 Theileria annulata uncharacterized protein XP_954837.1 268939 D 5874 CDS TA05325 3864886 join(269766..270015,270063..270414,270477..272529) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.37 - score = 67.43; methionyl-tRNA synthetase, putative 272529 3864886 TA05325 Theileria annulata methionyl-tRNA synthetase, putative XP_954838.1 269766 D 5874 CDS TA05330 3864887 join(272891..273002,273102..273226,273321..273519,273569..273645,273677..274106,274139..274182,274216..274536,274623..274767,274875..274999) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.38 - score = 55.84; uncharacterized protein 274999 3864887 TA05330 Theileria annulata uncharacterized protein XP_954839.1 272891 D 5874 CDS TA05335 3864888 275119..277065 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.39 - score = 41.27; protein kinase, putative 277065 3864888 TA05335 Theileria annulata protein kinase, putative XP_954840.1 275119 D 5874 CDS TA05340 3865098 join(277661..277819,277905..278142,278345..278640,278705..278800) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.40 - score = 18.77; uncharacterized protein 278800 3865098 TA05340 Theileria annulata uncharacterized protein XP_954841.1 277661 D 5874 CDS TA05345 3865099 complement(join(279091..279207,279239..279463,279513..279817,279922..279952,280035..280142,280172..280342)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.207 - score = 22.99; arsenical pump-driving ATPase, putative 280342 3865099 TA05345 Theileria annulata arsenical pump-driving ATPase, putative XP_954842.1 279091 R 5874 CDS TA05350 3865100 join(280467..280617,280702..282734) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.41 - score = 32.51; uncharacterized protein 282734 3865100 TA05350 Theileria annulata uncharacterized protein XP_954843.1 280467 D 5874 CDS TA05355 3865101 join(282906..283329,283411..288230) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.42 - score = 116.66; uncharacterized protein 288230 3865101 TA05355 Theileria annulata uncharacterized protein XP_954844.1 282906 D 5874 CDS TA05360 3865102 join(288555..288667,288700..288772,288802..288876,288908..288997,289029..289113,289144..289346) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.43 - score = 22.11; synaptobrevin, putative 289346 3865102 TA05360 Theileria annulata synaptobrevin, putative XP_954845.1 288555 D 5874 CDS TA05365 3865103 join(289824..291014,291079..291348,291406..291473,291535..292615,292697..292785,292816..292906) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.44 - score = 101.99; alpha-adaptin, putative 292906 3865103 TA05365 Theileria annulata alpha-adaptin, putative XP_954846.1 289824 D 5874 CDS TA05370 3865104 293270..294763 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.44 - score = 101.99; uncharacterized protein 294763 3865104 TA05370 Theileria annulata uncharacterized protein XP_954847.1 293270 D 5874 CDS TA05375 3865105 295072..298944 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.45 - score = 90.92; Signal peptide predicted for TA05375 by SignalP 2.0 HMM (Signal peptide probability 0.987, signal anchor probability 0.000) with cleavage site probability 0.866 between residues 21 and 22; uncharacterized protein 298944 3865105 TA05375 Theileria annulata uncharacterized protein XP_954848.1 295072 D 5874 CDS TA05380 3865106 299442..301118 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.46 - score = 35.59; uncharacterized protein 301118 3865106 TA05380 Theileria annulata uncharacterized protein XP_954849.1 299442 D 5874 CDS TA05385 3865107 join(301675..301866,301920..302138) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.47 - score = 13.69; uncharacterized protein 302138 3865107 TA05385 Theileria annulata uncharacterized protein XP_954850.1 301675 D 5874 CDS TA05390 3865108 302764..303315 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.48 - score = 17.12; 1 probable transmembrane helix predicted for TA05390 by TMHMM2.0 at aa 2-21; Signal peptide predicted for TA05390 by SignalP 2.0 HMM (Signal peptide probability 0.895, signal anchor probability 0.009) with cleavage site probability 0.447 between residues 21 and 22; uncharacterized protein 303315 3865108 TA05390 Theileria annulata uncharacterized protein XP_954851.1 302764 D 5874 CDS TA05395 3865109 304129..304539 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.49 - score = 12.61; histone H3, putative 304539 3865109 TA05395 Theileria annulata histone H3, putative XP_954852.1 304129 D 5874 CDS TA05400 3865110 305050..307350 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.50 - score = 63.99; 3 probable transmembrane helices predicted for TA05400 by TMHMM2.0 at aa 649-668, 689-711 and 726-748; uncharacterized protein 307350 3865110 TA05400 Theileria annulata uncharacterized protein XP_954853.1 305050 D 5874 CDS TA05405 3865111 join(307610..307936,307965..308177) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.51 - score = 12.73; 1 probable transmembrane helix predicted for TA05405 by TMHMM2.0 at aa 156-178; uncharacterized protein 308177 3865111 TA05405 Theileria annulata uncharacterized protein XP_954854.1 307610 D 5874 CDS TA05410 3865112 complement(join(308318..308415,308475..308640,308705..308942,308991..309045,309101..309158)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.206 - score = 22.44; uncharacterized protein 309158 3865112 TA05410 Theileria annulata uncharacterized protein XP_954855.1 308318 R 5874 CDS TA05415 3865113 join(309465..309869,310157..310210,310479..310539,310580..310900,310953..311060,311358..311581) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.52 - score = 16.09; 6 probable transmembrane helices predicted for TA05415 by TMHMM2.0 at aa 184-206, 211-229, 249-271, 284-306, 327-349 and 359-378; uncharacterized protein 311581 3865113 TA05415 Theileria annulata uncharacterized protein XP_954856.1 309465 D 5874 CDS TA05420 3865114 complement(join(311828..312037,312067..312208,312274..312393,312429..312457,312515..313255)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.205 - score = 38.15; uncharacterized protein 313255 3865114 TA05420 Theileria annulata uncharacterized protein XP_954857.1 311828 R 5874 CDS TA05425 3865115 complement(313474..314850) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.204 - score = 62.02; uncharacterized protein 314850 3865115 TA05425 Theileria annulata uncharacterized protein XP_954858.1 313474 R 5874 CDS TA05430 3865116 complement(join(314902..316031,316097..316436)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.204 - score = 62.02; adenosylhomocysteinase, putative 316436 3865116 TA05430 Theileria annulata adenosylhomocysteinase, putative XP_954859.1 314902 R 5874 CDS TA05435 3865117 join(317598..318833,318912..318995) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.53 - score = 23.52; uncharacterized protein 318995 3865117 TA05435 Theileria annulata uncharacterized protein XP_954860.1 317598 D 5874 CDS TA05440 3864673 complement(join(319270..319410,319458..319817,319857..320374,320532..320646)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.203 - score = 35.28; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05440 by SignalP 2.0 HMM (Signal peptide probability 0.939, signal anchor probability 0.035) with cleavage site probability 0.577 between residues 26 and 27; endonuclease III, putative 320646 3864673 TA05440 Theileria annulata endonuclease III, putative XP_954861.1 319270 R 5874 CDS TA05445 3864674 321175..321711 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.54 - score = 12.13; 60S ribosomal protein L19, putative 321711 3864674 TA05445 Theileria annulata 60S ribosomal protein L19, putative XP_954862.1 321175 D 5874 CDS TA05450 3864675 complement(join(321822..322361,322393..323853)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.202 - score = 40.82; nuclear-architecture-related protein (NARF) or Fe-hydrogenase, putative 323853 3864675 TA05450 Theileria annulata nuclear-architecture-related protein (NARF) or Fe-hydrogenase, putative XP_954863.1 321822 R 5874 CDS TA05455 3864676 join(324983..325565,325632..327062,327158..328174,328245..328570,328654..328757,328831..329299,329366..329681,329782..330430,330462..330525) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.55 - score = 116.92; 9 probable transmembrane helices predicted for TA05455 by TMHMM2.0 at aa 73-92, 156-178, 191-213, 358-380, 449-471, 974-996, 1028-1050, 1109-1126 and 1133-1155; ABC transporter, putative 330525 3864676 TA05455 Theileria annulata ABC transporter, putative XP_954864.1 324983 D 5874 CDS TA05460 3864677 join(330660..330815,330846..330975,331086..331184,331244..331287) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.56 - score = 10.66; uncharacterized protein 331287 3864677 TA05460 Theileria annulata uncharacterized protein XP_954865.1 330660 D 5874 CDS TA05465 3864678 join(331440..331803,332156..334270,334343..336265,336363..339745) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.57 - score = 172.47; 3 probable transmembrane helices predicted for TA05465 by TMHMM2.0 at aa 144-166, 229-251 and 2538-2555; uncharacterized protein 339745 3864678 TA05465 Theileria annulata uncharacterized protein XP_954866.1 331440 D 5874 CDS TA05470 3864679 340098..340817 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.58 - score = 18.59; uncharacterized protein 340817 3864679 TA05470 Theileria annulata uncharacterized protein XP_954867.1 340098 D 5874 CDS TA05475 3864680 join(341010..341508,341577..342344,342389..342509,342567..348225) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.59 - score = 108.02; uncharacterized protein 348225 3864680 TA05475 Theileria annulata uncharacterized protein XP_954868.1 341010 D 5874 CDS TA05480 3864681 complement(join(348547..348831,348864..348971,349003..349092,349137..349249,349293..349358,349400..349754,349834..350000,350081..350466,350524..350662,350694..350976)) 3 1 NC_011100.1 uncharacterized protein 350976 3864681 TA05480 Theileria annulata uncharacterized protein XP_954869.1 348547 R 5874 CDS TA05485 3864682 join(351374..351555,351593..351809,351858..352071,352136..352288,352434..352512,352572..352825,352857..354019,354066..354203,354265..354569,354644..354833,354875..355003) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.60 - score = 57.35; uncharacterized protein 355003 3864682 TA05485 Theileria annulata uncharacterized protein XP_954870.1 351374 D 5874 CDS TA05490 3864683 complement(join(355193..355278,355345..355478,355510..355553,355688..355699,355818..355956,356002..356124,356193..356338)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.200 - score = 16.47; Tap-24g11.q1c.C.cand.199 - score = 8.31; uncharacterized protein 356338 3864683 TA05490 Theileria annulata uncharacterized protein XP_954871.1 355193 R 5874 CDS TA05495 3864684 join(356935..357619,357692..357930) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.61 - score = 32.80; 2 probable transmembrane helices predicted for TA05495 by TMHMM2.0 at aa 5-27 and 241-260; Signal peptide predicted for TA05495 by SignalP 2.0 HMM (Signal peptide probability 0.946, signal anchor probability 0.000) with cleavage site probability 0.559 between residues 24 and 25; uncharacterized protein 357930 3864684 TA05495 Theileria annulata uncharacterized protein XP_954872.1 356935 D 5874 CDS TA05500 3864685 join(358299..358308,358480..358970) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.62 - score = 10.83; adenylyl-cyclase-associated protein, putative 358970 3864685 TA05500 Theileria annulata adenylyl-cyclase-associated protein, putative XP_954873.1 358299 D 5874 CDS TA05505 3864686 complement(join(359299..359471,359506..359740,359786..359912,360250..360461)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.198 - score = 16.12; 1 probable transmembrane helix predicted for TA05505 by TMHMM2.0 at aa 60-82; uncharacterized protein 360461 3864686 TA05505 Theileria annulata uncharacterized protein XP_954874.1 359299 R 5874 CDS TA05510 3864687 complement(join(360493..360681,360741..361008,361102..361387,361453..361578,361679..361958)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.197 - score = 21.66; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA05510 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA05510 by SignalP 2.0 HMM (Signal peptide probability 0.941, signal anchor probability 0.011) with cleavage site probability 0.372 between residues 25 and 26; uncharacterized protein 361958 3864687 TA05510 Theileria annulata uncharacterized protein XP_954875.1 360493 R 5874 CDS TA05515 3864688 complement(362165..364312) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.196 - score = 58.07; ankyrin-repeat protein, putative 364312 3864688 TA05515 Theileria annulata ankyrin-repeat protein, putative XP_954876.1 362165 R 5874 CDS TA05520 3864689 complement(join(365013..365620,365702..365813,365882..366064)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.195 - score = 62.36; uncharacterized protein 366064 3864689 TA05520 Theileria annulata uncharacterized protein XP_954877.1 365013 R 5874 CDS TA03215 3865189 complement(join(366301..368444,368471..368630)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.195 - score = 62.36; 1 probable transmembrane helix predicted for TA03215 by TMHMM2.0 at aa 744-766; uncharacterized protein 368630 3865189 TA03215 Theileria annulata uncharacterized protein XP_954878.1 366301 R 5874 CDS TA03220 3865190 complement(join(368895..369007,369043..370564)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.194 - score = 24.53; 11 probable transmembrane helices predicted for TA03220 by TMHMM2.0 at aa 29-51, 124-146, 156-178, 198-217, 227-249, 280-299, 319-341, 362-381, 391-410, 417-439 and 464-483; uncharacterized protein 370564 3865190 TA03220 Theileria annulata uncharacterized protein XP_954879.1 368895 R 5874 CDS TA03225 3865191 complement(join(370781..370984,371041..371184,371221..371417,371480..371614,371665..371840,371919..372337,372386..372508,372579..372769,372847..372904)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.193 - score = 56.99; T-complex polypeptide 1, putative 372904 3865191 TA03225 Theileria annulata T-complex polypeptide 1, putative XP_954880.1 370781 R 5874 CDS TA03230 3865192 complement(join(373695..373840,373874..373942,373972..374242,374306..374631,374672..375248)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.192 - score = 37.16; 2 probable transmembrane helices predicted for TA03230 by TMHMM2.0 at aa 99-121 and 386-408; uncharacterized protein 375248 3865192 TA03230 Theileria annulata uncharacterized protein XP_954881.1 373695 R 5874 CDS TA03235 3865193 complement(375650..380686) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.191 - score = 115.84; DNA-directed RNA polymerase II largest subunit, putative 380686 3865193 TA03235 Theileria annulata DNA-directed RNA polymerase II largest subunit, putative XP_954882.1 375650 R 5874 CDS TA03240 3865194 complement(join(380893..380975,381052..381210,381273..381489,381660..381737)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.190 - score = 14.41; uncharacterized protein 381737 3865194 TA03240 Theileria annulata uncharacterized protein XP_954883.1 380893 R 5874 CDS TA03245 3865195 complement(join(382781..382917,382991..383047,383079..383301)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.189 - score = 9.86; uncharacterized protein 383301 3865195 TA03245 Theileria annulata uncharacterized protein XP_954884.1 382781 R 5874 CDS TA03250 3865196 complement(383444..384841) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.188 - score = 56.06; uncharacterized protein 384841 3865196 TA03250 Theileria annulata uncharacterized protein XP_954885.1 383444 R 5874 CDS TA03255 3865197 385322..385693 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.64 - score = 10.22; uncharacterized protein 385693 3865197 TA03255 Theileria annulata uncharacterized protein XP_954886.1 385322 D 5874 CDS TA03260 3865198 join(386113..386176,386308..386339,386399..386452,386493..386532,386598..386674) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.65 - score = 16.00; uncharacterized protein 386674 3865198 TA03260 Theileria annulata uncharacterized protein XP_954887.1 386113 D 5874 CDS TA03275 3865201 386893..387606 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.65 - score = 16.00; plastid 50S ribosomal protein L21 or ribosomal protein L21, putative 387606 3865201 TA03275 Theileria annulata plastid 50S ribosomal protein L21 or ribosomal protein L21, putative XP_954888.1 386893 D 5874 CDS TA03280 3865202 complement(join(387859..388143,388345..388407,388502..388846,388941..390011)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.187 - score = 58.95; translation initiation factor, putative 390011 3865202 TA03280 Theileria annulata translation initiation factor, putative XP_954889.1 387859 R 5874 CDS TA03285 3865203 complement(390074..391072) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.187 - score = 58.95; uncharacterized protein 391072 3865203 TA03285 Theileria annulata uncharacterized protein XP_954890.1 390074 R 5874 CDS TA03290 3865204 complement(391205..392170) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.186 - score = 25.04; uncharacterized protein 392170 3865204 TA03290 Theileria annulata uncharacterized protein XP_954891.1 391205 R 5874 CDS TA03295 3865205 join(393129..393838,393994..394042,394092..395768) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.66 - score = 53.31; ATP-dependent (RNA) helicase, putative 395768 3865205 TA03295 Theileria annulata ATP-dependent (RNA) helicase, putative XP_954892.1 393129 D 5874 CDS TA03300 3865206 complement(395860..397872) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.185 - score = 42.57; Signal peptide predicted for TA03300 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.552 between residues 19 and 20; uncharacterized protein 397872 3865206 TA03300 Theileria annulata uncharacterized protein XP_954893.1 395860 R 5874 CDS TA03305 3865324 complement(398143..400326) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.184 - score = 45.48; Signal peptide predicted for TA03305 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.930 between residues 16 and 17; uncharacterized protein 400326 3865324 TA03305 Theileria annulata uncharacterized protein XP_954894.1 398143 R 5874 CDS TA03310 3865325 join(401320..401596,401769..401866,401925..401972,402179..402548,402648..403212,403315..403720) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.67 - score = 33.61; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA03310 by TMHMM2.0 at aa 2-21; Signal peptide predicted for TA03310 by SignalP 2.0 HMM (Signal peptide probability 0.821, signal anchor probability 0.038) with cleavage site probability 0.499 between residues 22 and 23; DNA-directed RNA polymerase D subunit, putative 403720 3865325 TA03310 Theileria annulata DNA-directed RNA polymerase D subunit, putative XP_954895.1 401320 D 5874 CDS TA03315 3865326 complement(join(404037..404204,404331..406541)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.183 - score = 50.58; phospholipase, putative 406541 3865326 TA03315 Theileria annulata phospholipase, putative XP_954896.1 404037 R 5874 CDS TA03320 3865327 complement(join(406839..407482,407553..408089,408174..408453)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.182 - score = 36.33; snrnp splicing factor (U2AF), putative 408453 3865327 TA03320 Theileria annulata snrnp splicing factor (U2AF), putative XP_954897.1 406839 R 5874 CDS TA03325 3865328 complement(408615..409052) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.181 - score = 9.76; uncharacterized protein 409052 3865328 TA03325 Theileria annulata uncharacterized protein XP_954898.1 408615 R 5874 CDS TA03330 3865329 complement(join(409796..410300,410407..410528,410561..410644,410766..411025,411168..411560,411700..411805,412044..412250,412337..412540,412686..412886,413021..413236,413380..413873,413917..414073,414183..414458)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.180 - score = 85.28; DNA polymerase alpha, catalytic subunit, putative 414458 3865329 TA03330 Theileria annulata DNA polymerase alpha, catalytic subunit, putative XP_954899.1 409796 R 5874 CDS TA03335 3865330 complement(join(414638..414874,415026..415123,415306..416629,416728..416815,416915..417160,417211..417313,417462..418062)) 3 1 NC_011100.1 note; 1 probable transmembrane helix predicted for TA03335 by TMHMM2.0 at aa 865-887; uncharacterized protein 418062 3865330 TA03335 Theileria annulata uncharacterized protein XP_954900.1 414638 R 5874 CDS TA03340 3865331 join(418247..418471,418556..418692,418725..418926,419047..419328,419462..419632,419662..419715,419777..419917) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.68 - score = 29.50; 1 probable transmembrane helix predicted for TA03340 by TMHMM2.0 at aa 44-66; thioredoxin-like protein, putative 419917 3865331 TA03340 Theileria annulata thioredoxin-like protein, putative XP_954901.1 418247 D 5874 CDS TA03345 3865332 complement(join(419991..420372,420459..420509,420587..420840,420913..421102,421192..421365,421485..421939)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.178 - score = 21.45; uncharacterized protein 421939 3865332 TA03345 Theileria annulata uncharacterized protein XP_954902.1 419991 R 5874 CDS TA03350 3865333 join(422406..423306,423441..423640,423739..423953,424050..424402,424723..424973) 3 1 NC_011100.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA03350 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA03350 by SignalP 2.0 HMM (Signal peptide probability 0.830, signal anchor probability 0.121) with cleavage site probability 0.613 between residues 19 and 20; chaperonin CPN60, putative 424973 3865333 TA03350 Theileria annulata chaperonin CPN60, putative XP_954903.1 422406 D 5874 CDS TA03355 3865334 complement(425106..426539) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.177 - score = 21.14; uncharacterized protein 426539 3865334 TA03355 Theileria annulata uncharacterized protein XP_954904.1 425106 R 5874 CDS TA03360 3865335 complement(join(426764..427197,427262..427730)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.176 - score = 21.60; uncharacterized protein 427730 3865335 TA03360 Theileria annulata uncharacterized protein XP_954905.1 426764 R 5874 CDS TA03365 3865336 join(427864..428279,428313..428766,428820..429092) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.70 - score = 19.59; 1 probable transmembrane helix predicted for TA03365 by TMHMM2.0 at aa 264-286; uncharacterized protein 429092 3865336 TA03365 Theileria annulata uncharacterized protein XP_954906.1 427864 D 5874 CDS TA03370 3865337 complement(join(429210..429427,429624..430103,430241..430354,430453..430582,430704..431040,431170..431311,431400..431579,431703..431832)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.175 - score = 33.94; T-complex protein 1 subunit, putative 431832 3865337 TA03370 Theileria annulata T-complex protein 1 subunit, putative XP_954907.1 429210 R 5874 CDS TA03380 3865339 join(432976..433312,433422..434450,434552..434812,434908..435639,435808..436335,436450..436754,436871..437005) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.71 - score = 294.95; splicing factor subunit, putative 437005 3865339 TA03380 Theileria annulata splicing factor subunit, putative XP_954908.1 432976 D 5874 CDS TA03385 3865340 437496..446786 3 1 NC_011100.1 Tap-24g11.q1c.cand.71 - score = 294.95; SfiI-subtelomeric fragment related protein family member, putative 446786 3865340 TA03385 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_954909.1 437496 D 5874 CDS TA03390 3865341 complement(join(447466..447651,447698..447909,448135..448564)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.173 - score = 19.66; uncharacterized protein 448564 3865341 TA03390 Theileria annulata uncharacterized protein XP_954910.1 447466 R 5874 CDS TA03395 3865342 join(449307..449472,449581..449868,449955..450360,450406..450947,451062..451243) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.72 - score = 22.13; uncharacterized protein 451243 3865342 TA03395 Theileria annulata uncharacterized protein XP_954911.1 449307 D 5874 CDS TA03400 3864614 join(451362..451658,451797..451848,451922..451996,452042..452157,452231..452432,452538..452600,452646..452842,452983..453285) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.74 - score = 18.41; DEAD-box (RNA) helicase, putative 453285 3864614 TA03400 Theileria annulata DEAD-box (RNA) helicase, putative XP_954912.1 451362 D 5874 CDS TA03405 3864615 complement(join(453489..453917,453989..454117,454171..454278,454403..454562,454618..454944,455038..455199,455284..455422,455502..455583)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.172 - score = 33.36; inosine-5'-monophosphate dehydrogenase, putative 455583 3864615 TA03405 Theileria annulata inosine-5'-monophosphate dehydrogenase, putative XP_954913.1 453489 R 5874 CDS TA03410 3864616 complement(join(455836..456145,456206..456321,456352..457587)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.171 - score = 36.95; peptidylprolyl isomerase (cyclophilin), putative 457587 3864616 TA03410 Theileria annulata peptidylprolyl isomerase (cyclophilin), putative XP_954914.1 455836 R 5874 CDS TA03415 3864617 join(457827..457872,457960..458091,458179..458459,458594..458698) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.75 - score = 14.33; 60S ribosomal protein L24/L30, putative 458698 3864617 TA03415 Theileria annulata 60S ribosomal protein L24/L30, putative XP_954915.1 457827 D 5874 CDS TA03420 3864618 join(458892..458924,459008..459133,459331..459443,459575..460182,460232..460296) 3 1 NC_011100.1 note; uncharacterized protein 460296 3864618 TA03420 Theileria annulata uncharacterized protein XP_954916.1 458892 D 5874 CDS TA03425 3864619 join(460654..460762,460843..460985,461026..461091,461146..461346) 3 1 NC_011100.1 note; sulfur metabolism negative regulator, putative 461346 3864619 TA03425 Theileria annulata sulfur metabolism negative regulator, putative XP_954917.1 460654 D 5874 CDS TA03440 3864622 complement(join(461354..461505,461767..462009,462180..462225)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.170 - score = 8.24; RNA-binding protein, putative 462225 3864622 TA03440 Theileria annulata RNA-binding protein, putative XP_954918.1 461354 R 5874 CDS TA03445 3864623 complement(join(462589..463253,463370..463487,463601..464041,464146..464277)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.169 - score = 31.20; (dihydrolipoamide) dehydrogenase precursor, putative 464277 3864623 TA03445 Theileria annulata (dihydrolipoamide) dehydrogenase precursor, putative XP_954919.1 462589 R 5874 CDS TA03450 3864624 join(464880..465054,465150..465334) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.78 - score = 7.76; 50S ribosomal protein L27, putative 465334 3864624 TA03450 Theileria annulata 50S ribosomal protein L27, putative XP_954920.1 464880 D 5874 CDS TA03455 3864625 complement(join(465503..466926,466992..467346)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.168 - score = 37.00; succinate dehydrogenase (flavoprotein) subunit, putative 467346 3864625 TA03455 Theileria annulata succinate dehydrogenase (flavoprotein) subunit, putative XP_954921.1 465503 R 5874 CDS TA03460 3864626 join(468037..468186,468239..469585) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.79 - score = 29.97; RNA 3'-terminal phosphate cyclase like-protein, putative 469585 3864626 TA03460 Theileria annulata RNA 3'-terminal phosphate cyclase like-protein, putative XP_954922.1 468037 D 5874 CDS TA03465 3864627 complement(469656..471254) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.167 - score = 40.31; seryl-tRNA synthetase, putative 471254 3864627 TA03465 Theileria annulata seryl-tRNA synthetase, putative XP_954923.1 469656 R 5874 CDS TA03470 3864628 complement(join(471432..471570,471603..471670,471724..471879,471961..472038,472108..472719,472781..472908,472974..473034,473066..473197,473288..473386)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.166 - score = 28.81; tubulin gamma-chain (gamma-tubulin), putative 473386 3864628 TA03470 Theileria annulata tubulin gamma-chain (gamma-tubulin), putative XP_954924.1 471432 R 5874 CDS TA03475 3864629 complement(473716..474459) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.165 - score = 29.48; Signal peptide predicted for TA03475 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.976 between residues 19 and 20; uncharacterized protein 474459 3864629 TA03475 Theileria annulata uncharacterized protein XP_954925.1 473716 R 5874 CDS TA03480 3864630 complement(join(474688..474814,474881..475197,475266..476746,476851..477807,477953..478163)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.164 - score = 40.32; 5 probable transmembrane helices predicted for TA03480 by TMHMM2.0 at aa 115-137, 167-189, 196-218, 233-250 and 255-277; uncharacterized protein 478163 3864630 TA03480 Theileria annulata uncharacterized protein XP_954926.1 474688 R 5874 CDS TA03485 3864631 join(479138..479299,479337..479396,479483..479614,479684..479772,479852..480032,480082..480170,480201..480301,480368..480576,480586..480604,480625..480770,480869..481070,481114..481700,481746..481892,481933..482093,482153..482351) 3 1 NC_011100.1 note; DNA replication licensing factor (MCM7 homolog), putative 482351 3864631 TA03485 Theileria annulata DNA replication licensing factor (MCM7 homolog), putative XP_954927.1 479138 D 5874 CDS TA03490 3864632 complement(482399..482827) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.163 - score = 9.48; uncharacterized protein 482827 3864632 TA03490 Theileria annulata uncharacterized protein XP_954928.1 482399 R 5874 CDS TA03495 3864633 complement(482959..488148) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.162 - score = 133.02; 2 probable transmembrane helices predicted for TA03495 by TMHMM2.0 at aa 309-328 and 335-357; uncharacterized protein 488148 3864633 TA03495 Theileria annulata uncharacterized protein XP_954929.1 482959 R 5874 CDS TA03500 3865001 complement(join(488388..488506,488552..489317)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.162 - score = 133.02; uncharacterized protein 489317 3865001 TA03500 Theileria annulata uncharacterized protein XP_954930.1 488388 R 5874 CDS TA03505 3865002 join(489417..489493,489552..489973,490005..490201,490285..490477,490513..490634,490664..491059) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.83 - score = 30.43; prenyl transferase, putative 491059 3865002 TA03505 Theileria annulata prenyl transferase, putative XP_954931.1 489417 D 5874 CDS TA03510 3865003 join(491891..491992,492022..492089,492162..492318,492350..493273) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.84 - score = 35.41; uncharacterized protein 493273 3865003 TA03510 Theileria annulata uncharacterized protein XP_954932.1 491891 D 5874 CDS TA03515 3865004 complement(join(493342..493421,493475..494582,494817..494927,495052..495289,495383..495550,495607..495902)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.161 - score = 35.44; uncharacterized protein 495902 3865004 TA03515 Theileria annulata uncharacterized protein XP_954933.1 493342 R 5874 CDS TA03520 3865005 complement(496040..499969) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.160 - score = 75.59; uncharacterized protein 499969 3865005 TA03520 Theileria annulata uncharacterized protein XP_954934.1 496040 R 5874 CDS TA03521 3865006 complement(500770..513651) 3 1 NC_011100.1 Theileria-specific hypothetical telomeric sfii fragment-related protein, putative 513651 3865006 TA03521 Theileria annulata Theileria-specific hypothetical telomeric sfii fragment-related protein, putative XP_954935.1 500770 R 5874 CDS TA03525 3865007 complement(join(514691..517385,517420..517535,517567..517637,517679..518132)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.158 - score = 76.85; uncharacterized protein 518132 3865007 TA03525 Theileria annulata uncharacterized protein XP_954936.1 514691 R 5874 CDS TA03530 3865008 518224..520128 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.85 - score = 16.47; Apicoplast targetting peptide predicted by the PlasmoAP tool; 10 probable transmembrane helices predicted for TA03530 by TMHMM2.0 at aa 4-26, 146-163, 178-200, 306-325, 329-351, 385-407, 510-529, 549-571, 576-598 and 611-633; Signal peptide predicted for TA03530 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.792 between residues 23 and 24; uncharacterized protein 520128 3865008 TA03530 Theileria annulata uncharacterized protein XP_954937.1 518224 D 5874 CDS TA03535 3865009 complement(520238..521083) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.157 - score = 16.81; uncharacterized protein 521083 3865009 TA03535 Theileria annulata uncharacterized protein XP_954938.1 520238 R 5874 CDS TA03545 3865011 complement(521248..523368) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.156 - score = 68.47; Signal peptide predicted for TA03545 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.000) with cleavage site probability 0.665 between residues 16 and 17; uncharacterized protein 523368 3865011 TA03545 Theileria annulata uncharacterized protein XP_954939.1 521248 R 5874 CDS TA03550 3865012 complement(join(523728..525073,525142..525256)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.155 - score = 42.13; uncharacterized protein 525256 3865012 TA03550 Theileria annulata uncharacterized protein XP_954940.1 523728 R 5874 CDS TA03555 3865013 join(525552..525588,525667..525705,525862..526841) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.86 - score = 30.40; uncharacterized protein 526841 3865013 TA03555 Theileria annulata uncharacterized protein XP_954941.1 525552 D 5874 CDS TA03560 3865014 complement(join(526927..527274,527305..527589,527618..527742,527779..527832,527873..527950,528010..528356,528421..528554,528585..528749)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.154 - score = 40.86; uncharacterized protein 528749 3865014 TA03560 Theileria annulata uncharacterized protein XP_954942.1 526927 R 5874 CDS TA03565 3865015 529085..531268 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.87 - score = 32.00; uncharacterized protein 531268 3865015 TA03565 Theileria annulata uncharacterized protein XP_954943.1 529085 D 5874 CDS TA03570 3865016 complement(join(531443..532389,532463..532538,532784..533974)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.153 - score = 49.45; uncharacterized protein 533974 3865016 TA03570 Theileria annulata uncharacterized protein XP_954944.1 531443 R 5874 CDS TA03575 3865017 join(534913..535111,535165..535985) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.88 - score = 27.83; ATP-binding protein, putative 535985 3865017 TA03575 Theileria annulata ATP-binding protein, putative XP_954945.1 534913 D 5874 CDS TA03580 3865018 complement(join(536166..536192,536223..536312,536345..536390,536421..536508,536565..536715,536782..537003,537059..537150,537215..537485)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.152 - score = 32.00; uncharacterized protein 537485 3865018 TA03580 Theileria annulata uncharacterized protein XP_954946.1 536166 R 5874 CDS TA03585 3865019 complement(join(537693..538031,538176..539198)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.151 - score = 31.26; uncharacterized protein 539198 3865019 TA03585 Theileria annulata uncharacterized protein XP_954947.1 537693 R 5874 CDS TA03590 3864850 complement(join(539411..539553,539636..539929,540021..540162,540189..541451)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.150 - score = 26.94; 12 probable transmembrane helices predicted for TA03590 by TMHMM2.0 at aa 29-51, 64-86, 96-113, 155-177, 192-214, 249-271, 365-384, 410-432, 452-474, 487-506, 526-548 and 569-591; Signal anchor predicted for TA03590 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.659) with cleavage site probability 0.004 between residues 40 and 41; uncharacterized protein 541451 3864850 TA03590 Theileria annulata uncharacterized protein XP_954948.1 539411 R 5874 CDS TA03600 3864852 join(542043..543103,543318..544581) 3 1 NC_011100.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03600 by SignalP 2.0 HMM (Signal peptide probability 0.699, signal anchor probability 0.000) with cleavage site probability 0.599 between residues 18 and 19; uncharacterized protein 544581 3864852 TA03600 Theileria annulata uncharacterized protein XP_954949.1 542043 D 5874 CDS TA03605 3864853 complement(join(545499..545687,545775..545882,545913..545981,546011..546107,546183..546331)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.149 - score = 13.66; uncharacterized protein 546331 3864853 TA03605 Theileria annulata uncharacterized protein XP_954950.1 545499 R 5874 CDS TA03610 3864854 join(546799..546870,546904..547019,547064..547298,547327..547387,547537..547665,547742..547832,547862..548198) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.90 - score = 32.68; 2 probable transmembrane helices predicted for TA03610 by TMHMM2.0 at aa 228-250 and 255-277; uncharacterized protein 548198 3864854 TA03610 Theileria annulata uncharacterized protein XP_954951.1 546799 D 5874 CDS TA03615 3864855 548618..550957 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.91 - score = 41.88; Signal peptide predicted for TA03615 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.906 between residues 18 and 19; uncharacterized protein 550957 3864855 TA03615 Theileria annulata uncharacterized protein XP_954952.1 548618 D 5874 CDS TA03620 3864856 complement(join(551151..551276,551342..551877,551959..552381,552528..552618)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.148 - score = 21.07; 2 probable transmembrane helices predicted for TA03620 by TMHMM2.0 at aa 287-309 and 339-361; Signal peptide predicted for TA03620 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.001) with cleavage site probability 0.580 between residues 21 and 22; bifunctional nuclease, putative 552618 3864856 TA03620 Theileria annulata bifunctional nuclease, putative XP_954953.1 551151 R 5874 CDS TA03625 3864857 complement(join(552789..553019,553058..553234,553328..553423,553543..553646,553714..553819,553891..553953)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.147 - score = 22.12; uncharacterized protein 553953 3864857 TA03625 Theileria annulata uncharacterized protein XP_954954.1 552789 R 5874 CDS TA03630 3864858 554842..556521 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.92 - score = 36.22; uncharacterized protein 556521 3864858 TA03630 Theileria annulata uncharacterized protein XP_954955.1 554842 D 5874 CDS TA03635 3864859 complement(join(556606..556775,556814..556905,556984..557303)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.146 - score = 16.35; uncharacterized protein 557303 3864859 TA03635 Theileria annulata uncharacterized protein XP_954956.1 556606 R 5874 CDS TA03640 3864860 complement(557464..560904) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.145 - score = 72.33; Signal peptide predicted for TA03640 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.649 between residues 19 and 20; GPI-Anchor Signal predicted for TA03640 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 560904 3864860 TA03640 Theileria annulata uncharacterized protein XP_954957.1 557464 R 5874 CDS TA03645 3864861 complement(join(561062..561225,561254..561318,561440..561577,561609..561697,561765..562148,562193..562323,562419..562452)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.144 - score = 20.44; 50S ribosomal protein L2, putative 562452 3864861 TA03645 Theileria annulata 50S ribosomal protein L2, putative XP_954958.1 561062 R 5874 CDS TA03655 3864863 join(562575..562661,562702..563066,563100..564027,564059..564349) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.93 - score = 47.65; uncharacterized protein 564349 3864863 TA03655 Theileria annulata uncharacterized protein XP_954959.1 562575 D 5874 CDS TA03660 3864864 join(564419..564493,564534..564794) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.94 - score = 7.10; uncharacterized protein 564794 3864864 TA03660 Theileria annulata uncharacterized protein XP_954960.1 564419 D 5874 CDS TA03665 3864865 complement(565013..565840) 3 1 NC_011100.1 note; uncharacterized protein 565840 3864865 TA03665 Theileria annulata uncharacterized protein XP_954961.1 565013 R 5874 CDS TA03670 3864866 565929..566519 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.95 - score = 11.38; Signal peptide predicted for TA03670 by SignalP 2.0 HMM (Signal peptide probability 0.613, signal anchor probability 0.000) with cleavage site probability 0.273 between residues 20 and 21; uncharacterized protein 566519 3864866 TA03670 Theileria annulata uncharacterized protein XP_954962.1 565929 D 5874 CDS TA03675 3864867 complement(join(566721..566999,567032..567061,567097..567270,567303..567398,567455..567556,567587..567748)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.142 - score = 25.82; uncharacterized protein 567748 3864867 TA03675 Theileria annulata uncharacterized protein XP_954963.1 566721 R 5874 CDS TA03680 3864868 complement(join(567794..567954,567989..568436)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.141 - score = 13.71; Signal peptide predicted for TA03680 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.005) with cleavage site probability 0.453 between residues 22 and 23; uncharacterized protein 568436 3864868 TA03680 Theileria annulata uncharacterized protein XP_954964.1 567794 R 5874 CDS TA03685 3864869 join(568725..568896,568932..569101,569134..569313,569385..569588,569636..569809) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.96 - score = 18.70; uncharacterized protein 569809 3864869 TA03685 Theileria annulata uncharacterized protein XP_954965.1 568725 D 5874 CDS TA03690 3864595 complement(join(570237..570592,570653..570971,571022..571260,571296..571348,571421..571521)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.140 - score = 37.15; eukaryotic initiation factor, putative 571521 3864595 TA03690 Theileria annulata eukaryotic initiation factor, putative XP_954966.1 570237 R 5874 CDS TA03695 3864596 complement(join(571877..572038,572068..572224,572254..572335,572392..572560,572590..572832)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.139 - score = 22.80; 1 probable transmembrane helix predicted for TA03695 by TMHMM2.0 at aa 13-32; uncharacterized protein 572832 3864596 TA03695 Theileria annulata uncharacterized protein XP_954967.1 571877 R 5874 CDS TA03700 3864597 complement(join(573070..573353,573389..573469,573508..573694)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.138 - score = 14.42; uncharacterized protein 573694 3864597 TA03700 Theileria annulata uncharacterized protein XP_954968.1 573070 R 5874 CDS TA03715 3864600 join(574323..574739,574771..575289,575321..575762,575793..576295) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.97 - score = 43.71; GTP-binding protein, putative 576295 3864600 TA03715 Theileria annulata GTP-binding protein, putative XP_954969.1 574323 D 5874 CDS TA03720 3864601 join(576922..577411,577474..578324) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.98 - score = 35.21; 1 probable transmembrane helix predicted for TA03720 by TMHMM2.0 at aa 47-69; Signal anchor predicted for TA03720 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.999) with cleavage site probability 0.000 between residues -1 and 0; cysteine proteinase precursor, tacP, putative 578324 3864601 TA03720 Theileria annulata cysteine proteinase precursor, tacP, putative XP_954970.1 576922 D 5874 CDS TA03725 3864602 join(578681..579170,579233..580086) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.99 - score = 34.22; 1 probable transmembrane helix predicted for TA03725 by TMHMM2.0 at aa 47-69; Signal anchor predicted for TA03725 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.999) with cleavage site probability 0.000 between residues -1 and 0; cysteine proteinase precursor, tacP, putative 580086 3864602 TA03725 Theileria annulata cysteine proteinase precursor, tacP, putative XP_954971.1 578681 D 5874 CDS TA03730 3864603 581004..582500 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.100 - score = 76.91; 1 probable transmembrane helix predicted for TA03730 by TMHMM2.0 at aa 46-68; Signal anchor predicted for TA03730 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.925) with cleavage site probability 0.000 between residues -1 and 0; cysteine proteinase precursor, tacP, putative 582500 3864603 TA03730 Theileria annulata cysteine proteinase precursor, tacP, putative XP_954972.1 581004 D 5874 CDS TA03735 3864604 join(582685..583165,583207..584111) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.100 - score = 76.91; 1 probable transmembrane helix predicted for TA03735 by TMHMM2.0 at aa 45-67; Signal anchor predicted for TA03735 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.978) with cleavage site probability 0.000 between residues 59 and 60; cysteine protease precursor, tacP, putative 584111 3864604 TA03735 Theileria annulata cysteine protease precursor, tacP, putative XP_954973.1 582685 D 5874 CDS TA03740 3864605 584825..586150 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.101 - score = 24.10; 1 probable transmembrane helix predicted for TA03740 by TMHMM2.0 at aa 38-60; Signal anchor predicted for TA03740 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.840) with cleavage site probability 0.005 between residues 54 and 55; cysteine proteinase precursor, tacP, putative 586150 3864605 TA03740 Theileria annulata cysteine proteinase precursor, tacP, putative XP_954974.1 584825 D 5874 CDS TA03745 3864606 join(586517..586991,587024..587877) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.102 - score = 35.38; 1 probable transmembrane helix predicted for TA03745 by TMHMM2.0 at aa 43-65; Signal anchor predicted for TA03745 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.972) with cleavage site probability 0.000 between residues 58 and 59; cysteine proteinase precursor, tacP, putative 587877 3864606 TA03745 Theileria annulata cysteine proteinase precursor, tacP, putative XP_954975.1 586517 D 5874 CDS TA03750 3864607 join(588241..588715,588748..589589) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.103 - score = 35.76; 1 probable transmembrane helix predicted for TA03750 by TMHMM2.0 at aa 43-65; Signal anchor predicted for TA03750 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.972) with cleavage site probability 0.000 between residues 58 and 59; cysteine proteinase precursor, tacP, putative 589589 3864607 TA03750 Theileria annulata cysteine proteinase precursor, tacP, putative XP_954976.1 588241 D 5874 CDS TA03755 3864608 591333..594086 3 1 NC_011100.1 note; 1 probable transmembrane helix predicted for TA03755 by TMHMM2.0 at aa 894-916; Signal peptide predicted for TA03755 by SignalP 2.0 HMM (Signal peptide probability 0.910, signal anchor probability 0.002) with cleavage site probability 0.441 between residues 18 and 19; GPI-Anchor Signal predicted for TA03755 by DGPI v2.04 with cleavage site probability 0.59159994 near 896; sporozoite surface antigen, putative 594086 3864608 TA03755 Theileria annulata sporozoite surface antigen, putative XP_954977.1 591333 D 5874 CDS TA03760 3864609 594181..596136 3 1 NC_011100.1 ORF1-related protein, putative 596136 3864609 TA03760 Theileria annulata ORF1-related protein, putative XP_954978.1 594181 D 5874 CDS TA03770 3864611 complement(join(596200..596855,596887..597142)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.135 - score = 23.35; Signal peptide predicted for TA03770 by SignalP 2.0 HMM (Signal peptide probability 0.777, signal anchor probability 0.000) with cleavage site probability 0.761 between residues 18 and 19; uncharacterized protein 597142 3864611 TA03770 Theileria annulata uncharacterized protein XP_954979.1 596200 R 5874 CDS TA03775 3864612 complement(join(597289..597582,597613..598017,598070..598461,598491..598776,598807..599202)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.134 - score = 43.67; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA03775 by TMHMM2.0 at aa 2-20; Signal peptide predicted for TA03775 by SignalP 2.0 HMM (Signal peptide probability 0.933, signal anchor probability 0.011) with cleavage site probability 0.655 between residues 17 and 18; uncharacterized protein 599202 3864612 TA03775 Theileria annulata uncharacterized protein XP_954980.1 597289 R 5874 CDS TA03780 3864613 complement(join(600878..601413,601623..603053,603444..604294,604571..607892,607972..609972,610081..610300)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.133 - score = 125.35; splicing factor (PRP8 homologue), putative 610300 3864613 TA03780 Theileria annulata splicing factor (PRP8 homologue), putative XP_954981.1 600878 R 5874 CDS TA03785 3864830 complement(join(610615..610925,611066..611525)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.132 - score = 10.72; proteasome subunit, putative 611525 3864830 TA03785 Theileria annulata proteasome subunit, putative XP_954982.1 610615 R 5874 CDS TA03790 3864831 complement(join(611679..611778,611861..612062,612354..612563,612678..612876)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.131 - score = 8.64; U2 snRNP auxiliary factor, putative 612876 3864831 TA03790 Theileria annulata U2 snRNP auxiliary factor, putative XP_954983.1 611679 R 5874 CDS TA03795 3864832 join(613053..613187,613351..614940) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.106 - score = 24.38; uncharacterized protein 614940 3864832 TA03795 Theileria annulata uncharacterized protein XP_954984.1 613053 D 5874 CDS TA03800 3864833 615343..618012 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.107 - score = 28.87; uncharacterized protein 618012 3864833 TA03800 Theileria annulata uncharacterized protein XP_954985.1 615343 D 5874 CDS TA03805 3864834 complement(join(618449..620226,620276..620335,620648..620770,620806..621525,621564..621602,621959..622031)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.130 - score = 72.39; uncharacterized protein 622031 3864834 TA03805 Theileria annulata uncharacterized protein XP_954986.1 618449 R 5874 CDS TA03810 3864835 complement(623704..624339) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.129 - score = 9.36; uncharacterized protein 624339 3864835 TA03810 Theileria annulata uncharacterized protein XP_954987.1 623704 R 5874 CDS TA03815 3864836 626505..627242 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.108 - score = 8.80; uncharacterized protein 627242 3864836 TA03815 Theileria annulata uncharacterized protein XP_954988.1 626505 D 5874 CDS TA03825 3864838 627893..628840 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.109 - score = 14.97; 3 probable transmembrane helices predicted for TA03825 by TMHMM2.0 at aa 219-238, 242-264 and 277-299; uncharacterized protein 628840 3864838 TA03825 Theileria annulata uncharacterized protein XP_954989.1 627893 D 5874 CDS TA03830 3864839 join(628962..629059,629093..629183,629261..629334,629480..629786) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.110 - score = 12.98; uncharacterized protein 629786 3864839 TA03830 Theileria annulata uncharacterized protein XP_954990.1 628962 D 5874 CDS TA03835 3864840 630121..631713 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.111 - score = 67.43; 1 probable transmembrane helix predicted for TA03835 by TMHMM2.0 at aa 13-35; uncharacterized protein 631713 3864840 TA03835 Theileria annulata uncharacterized protein XP_954991.1 630121 D 5874 CDS TA03840 3864841 631827..634205 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.111 - score = 67.43; uncharacterized protein 634205 3864841 TA03840 Theileria annulata uncharacterized protein XP_954992.1 631827 D 5874 CDS TA03845 3864842 complement(join(634649..634993,635083..635904,635943..636272,636326..636694)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.127 - score = 82.68; 2 probable transmembrane helices predicted for TA03845 by TMHMM2.0 at aa 36-58 and 203-225; uncharacterized protein 636694 3864842 TA03845 Theileria annulata uncharacterized protein XP_954993.1 634649 R 5874 CDS TA03850 3864843 complement(join(636952..639330,639662..639802)) 3 1 NC_011100.1 Tap-24g11.q1c.C.cand.127 - score = 82.68; Signal peptide predicted for TA03850 by SignalP 2.0 HMM (Signal peptide probability 0.836, signal anchor probability 0.002) with cleavage site probability 0.318 between residues 33 and 34; Tpr-related protein family member, putative 639802 3864843 TA03850 Theileria annulata Tpr-related protein family member, putative XP_954994.1 636952 R 5874 CDS TA03855 3864844 complement(639900..640940) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.126 - score = 17.57; 6 probable transmembrane helices predicted for TA03855 by TMHMM2.0 at aa 17-36, 40-62, 69-91, 101-123, 135-157 and 196-218; Signal peptide predicted for TA03855 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.433 between residues 38 and 39; Tpr-related protein family member, putative 640940 3864844 TA03855 Theileria annulata Tpr-related protein family member, putative XP_954995.1 639900 R 5874 CDS TA03860 3864845 complement(join(641297..641530,641562..641603,641943..642344,642701..642817,642885..642974)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.125 - score = 16.14; pepsinogen, putative 642974 3864845 TA03860 Theileria annulata pepsinogen, putative XP_954996.1 641297 R 5874 CDS TA03865 3864846 join(645102..645162,645243..646576) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.113 - score = 28.01; 1 probable transmembrane helix predicted for TA03865 by TMHMM2.0 at aa 7-29; uncharacterized protein 646576 3864846 TA03865 Theileria annulata uncharacterized protein XP_954997.1 645102 D 5874 CDS TA03870 3864847 complement(647147..647746) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.124 - score = 14.22; Signal peptide predicted for TA03870 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.982 between residues 17 and 18; uncharacterized protein 647746 3864847 TA03870 Theileria annulata uncharacterized protein XP_954998.1 647147 R 5874 CDS TA03880 3864849 complement(join(649351..649450,649481..649575,649606..649797)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.123 - score = 14.70; uncharacterized protein 649797 3864849 TA03880 Theileria annulata uncharacterized protein XP_954999.1 649351 R 5874 CDS TA03885 3864772 complement(join(649917..650580,650843..651084)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.122 - score = 10.62; uncharacterized protein 651084 3864772 TA03885 Theileria annulata uncharacterized protein XP_955000.1 649917 R 5874 CDS TA03890 3864773 join(652254..654546,655580..656265,656495..656565,656983..657064,657097..657200,657744..657815,658159..658363,658395..658505,658873..658988,659309..659453,659833..659893,659937..660010,660277..660370,660951..661034,661201..661372,661885..661990,662204..662363,662450..662574,662652..663629) 3 1 NC_011100.1 chromosome segregation (SMC) protein, putative 663629 3864773 TA03890 Theileria annulata chromosome segregation (SMC) protein, putative XP_955001.1 652254 D 5874 CDS TA03895 3864774 664899..665912 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.121 - score = 9.09; casein kinase, putative 665912 3864774 TA03895 Theileria annulata casein kinase, putative XP_955002.1 664899 D 5874 CDS TA03900 3864775 complement(join(666726..667042,667426..668102,668136..668248)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.121 - score = 31.87; RNA-binding protein, putative; SfiI-subtelomeric fragment related protein family member, putative 668248 3864775 TA03900 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955003.1 666726 R 5874 CDS TA03905 3864776 complement(668494..669090) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.121 - score = 31.87; uncharacterized protein 669090 3864776 TA03905 Theileria annulata uncharacterized protein XP_955004.1 668494 R 5874 CDS TA03910 3864777 join(671140..671842,671956..672107,672365..672500,672602..672668,673089..673606,674012..674114,674387..674400,674488..674575,674716..674821,675294..675699,676192..676334,676367..676443,677206..677248,677330..677563) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.122 - score = 18.02; Signal peptide predicted for TA03910 by SignalP 2.0 HMM (Signal peptide probability 0.726, signal anchor probability 0.000) with cleavage site probability 0.649 between residues 15 and 16; uncharacterized protein 677563 3864777 TA03910 Theileria annulata uncharacterized protein XP_955005.1 671140 D 5874 CDS TA03915 3864778 complement(677717..678040) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.120 - score = 8.33; uncharacterized protein 678040 3864778 TA03915 Theileria annulata uncharacterized protein XP_955006.1 677717 R 5874 CDS TA03920 3864779 complement(join(678855..678965,678998..679054,679163..679373,679492..679556,679652..679729)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.119 - score = 15.13; uncharacterized protein 679729 3864779 TA03920 Theileria annulata uncharacterized protein XP_955007.1 678855 R 5874 CDS TA03925 3864780 complement(join(679788..679982,680089..680227,680789..680952,681075..681174,681414..681496,682459..682672,683122..683236,683277..683398,683961..684452,685074..685565,685598..685881)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.115 - score = 14.08; uncharacterized protein 685881 3864780 TA03925 Theileria annulata uncharacterized protein XP_955008.1 679788 R 5874 CDS TA03935 3864782 join(686912..687047,687154..687230,687262..687342,687564..687655,687747..687805,687836..687918,687950..688111) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.124 - score = 30.31; uncharacterized protein 688111 3864782 TA03935 Theileria annulata uncharacterized protein XP_955009.1 686912 D 5874 CDS TA03940 3864783 688154..690187 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA03940 by TMHMM2.0 at aa 608-630; uncharacterized protein 690187 3864783 TA03940 Theileria annulata uncharacterized protein XP_955010.1 688154 D 5874 CDS TA03945 3864784 join(692575..693338,693489..693670,693909..694351) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.126 - score = 28.71; uncharacterized protein 694351 3864784 TA03945 Theileria annulata uncharacterized protein XP_955011.1 692575 D 5874 CDS TA03950 3864785 694551..695378 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.126 - score = 28.71; 1 probable transmembrane helix predicted for TA03950 by TMHMM2.0 at aa 10-32; Signal anchor predicted for TA03950 by SignalP 2.0 HMM (Signal peptide probability 0.125, signal anchor probability 0.762) with cleavage site probability 0.107 between residues 26 and 27; 50S ribosomal protein L12, putative 695378 3864785 TA03950 Theileria annulata 50S ribosomal protein L12, putative XP_955012.1 694551 D 5874 CDS TA03955 3864786 join(695589..696486,696562..696644) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.127 - score = 51.59; uncharacterized protein 696644 3864786 TA03955 Theileria annulata uncharacterized protein XP_955013.1 695589 D 5874 CDS TA03960 3864787 join(697042..697161,697249..698442) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.127 - score = 51.59; uncharacterized protein 698442 3864787 TA03960 Theileria annulata uncharacterized protein XP_955014.1 697042 D 5874 CDS TA03965 3864788 698631..699872 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.128 - score = 35.76; 4 probable transmembrane helices predicted for TA03965 by TMHMM2.0 at aa 120-142, 193-215, 284-306 and 389-411; uncharacterized protein 699872 3864788 TA03965 Theileria annulata uncharacterized protein XP_955015.1 698631 D 5874 CDS TA03970 3864789 699903..701147 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.128 - score = 35.76; 7 probable transmembrane helices predicted for TA03970 by TMHMM2.0 at aa 66-88, 103-125, 145-164, 193-215, 277-299, 314-336 and 343-365; uncharacterized protein 701147 3864789 TA03970 Theileria annulata uncharacterized protein XP_955016.1 699903 D 5874 CDS TA03975 3864790 complement(join(701255..701514,701542..702076)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.114 - score = 22.48; uncharacterized protein 702076 3864790 TA03975 Theileria annulata uncharacterized protein XP_955017.1 701255 R 5874 CDS TA03980 3865207 complement(join(702093..702358,702390..702479,702511..702646,702737..702751)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.113 - score = 17.50; ubiquitin-conjugating enzyme E2, putative 702751 3865207 TA03980 Theileria annulata ubiquitin-conjugating enzyme E2, putative XP_955018.1 702093 R 5874 CDS TA03990 3865209 join(702850..703073,703102..703372) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.129 - score = 16.46; uncharacterized protein 703372 3865209 TA03990 Theileria annulata uncharacterized protein XP_955019.1 702850 D 5874 CDS TA03995 3865210 complement(join(703611..704162,704201..704248,704280..704336,704372..707347)) 3 1 NC_011100.1 note; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA03995 by SignalP 2.0 HMM (Signal peptide probability 0.931, signal anchor probability 0.019) with cleavage site probability 0.729 between residues 22 and 23; uncharacterized protein 707347 3865210 TA03995 Theileria annulata uncharacterized protein XP_955020.1 703611 R 5874 CDS TA04000 3865211 708380..710239 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.130 - score = 17.59; 12 probable transmembrane helices predicted for TA04000 by TMHMM2.0 at aa 47-69, 84-106, 113-132, 136-158, 170-189, 199-221, 411-433, 448-470, 483-505, 510-532, 545-567 and 577-599; integral membrane protein family I, putative 710239 3865211 TA04000 Theileria annulata integral membrane protein family I, putative XP_955021.1 708380 D 5874 CDS TA04005 3865212 710627..712303 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.131 - score = 14.05; 12 probable transmembrane helices predicted for TA04005 by TMHMM2.0 at aa 48-70, 85-107, 114-133, 137-159, 172-194, 204-223, 355-377, 392-414, 427-449, 454-476, 489-511 and 521-543; integral membrane protein family I, putative 712303 3865212 TA04005 Theileria annulata integral membrane protein family I, putative XP_955022.1 710627 D 5874 CDS TA04010 3865213 712718..714412 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.132 - score = 13.66; 12 probable transmembrane helices predicted for TA04010 by TMHMM2.0 at aa 48-70, 83-105, 110-132, 137-159, 174-196, 203-222, 352-374, 387-409, 424-446, 451-473, 488-510 and 517-539; integral membrane protein family I, putative 714412 3865213 TA04010 Theileria annulata integral membrane protein family I, putative XP_955023.1 712718 D 5874 CDS TA04015 3865214 714790..716424 3 1 NC_011100.1 12 probable transmembrane helices predicted for TA04015 by TMHMM2.0 at aa 30-52, 72-93, 100-119, 123-145, 157-176, 191-210, 339-361, 376-398, 411-433, 438-460, 472-494 and 504-526; integral membrane protein family I, putative 716424 3865214 TA04015 Theileria annulata integral membrane protein family I, putative XP_955024.1 714790 D 5874 CDS TA04016 3865215 716781..718415 3 1 NC_011100.1 11 probable transmembrane helices predicted for TA04016 by TMHMM2.0 at aa 35-57, 70-92, 97-119, 124-146, 161-183, 339-361, 376-398, 411-433, 438-460, 473-495 and 505-527; integral membrane protein family I, putative 718415 3865215 TA04016 Theileria annulata integral membrane protein family I, putative XP_955025.1 716781 D 5874 CDS TA04017 3865216 718772..720427 3 1 NC_011100.1 12 probable transmembrane helices predicted for TA04017 by TMHMM2.0 at aa 35-57, 70-92, 97-119, 124-146, 161-183, 190-209, 339-361, 374-396, 411-433, 438-460, 475-497 and 504-526; integral membrane protein family I, putative 720427 3865216 TA04017 Theileria annulata integral membrane protein family I, putative XP_955026.1 718772 D 5874 CDS TA04018 3865217 720805..722439 3 1 NC_011100.1 12 probable transmembrane helices predicted for TA04018 by TMHMM2.0 at aa 30-52, 72-93, 100-119, 123-145, 157-176, 191-210, 339-361, 376-398, 411-433, 438-460, 472-494 and 504-526; integral membrane protein family I, putative 722439 3865217 TA04018 Theileria annulata integral membrane protein family I, putative XP_955027.1 720805 D 5874 CDS TA04020 3865218 join(722796..723163,723359..723683) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.134 - score = 7.00; 5 probable transmembrane helices predicted for TA04020 by TMHMM2.0 at aa 35-57, 72-94, 107-129, 158-180 and 185-207; integral membrane protein family I, putative 723683 3865218 TA04020 Theileria annulata integral membrane protein family I, putative XP_955028.1 722796 D 5874 CDS TA04025 3865219 724132..725475 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.135 - score = 29.82; uncharacterized protein 725475 3865219 TA04025 Theileria annulata uncharacterized protein XP_955029.1 724132 D 5874 CDS TA04030 3865220 join(725694..726082,726153..726441,726473..726724) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.136 - score = 14.78; 6 probable transmembrane helices predicted for TA04030 by TMHMM2.0 at aa 53-70, 75-97, 110-132, 142-159, 179-201 and 268-290; Signal anchor predicted for TA04030 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.777) with cleavage site probability 0.000 between residues -1 and 0; ER lumen protein retaining receptor 1, putative 726724 3865220 TA04030 Theileria annulata ER lumen protein retaining receptor 1, putative XP_955030.1 725694 D 5874 CDS TA04035 3865221 join(726827..727204,727235..727297,727329..727706,727737..727817,727847..727888,727918..728109,728140..728361) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.137 - score = 44.76; 8 probable transmembrane helices predicted for TA04035 by TMHMM2.0 at aa 7-28, 83-104, 132-154, 206-228, 248-270, 306-328, 341-363 and 378-397; uncharacterized protein 728361 3865221 TA04035 Theileria annulata uncharacterized protein XP_955031.1 726827 D 5874 CDS TA04040 3865222 join(728462..728517,728549..728664,728735..728823,728854..728974,729004..729054,729086..729132) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.137 - score = 44.76; uncharacterized protein 729132 3865222 TA04040 Theileria annulata uncharacterized protein XP_955032.1 728462 D 5874 CDS TA04045 3865223 join(729455..729590,729622..730103,730142..730244,730274..730365,730421..730782,730813..730900,730932..731163,731193..731380) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.138 - score = 56.43; glucose-6-phosphate isomerase, putative 731380 3865223 TA04045 Theileria annulata glucose-6-phosphate isomerase, putative XP_955033.1 729455 D 5874 CDS TA04050 3865224 complement(731384..732967) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.111 - score = 34.67; uncharacterized protein 732967 3865224 TA04050 Theileria annulata uncharacterized protein XP_955034.1 731384 R 5874 CDS TA04055 3865225 join(733877..734356,734389..734618,734649..735297) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.139 - score = 24.15; 12 probable transmembrane helices predicted for TA04055 by TMHMM2.0 at aa 38-60, 75-94, 107-129, 133-155, 168-185, 195-212, 233-255, 275-297, 304-326, 336-358, 371-393 and 408-427; uncharacterized protein 735297 3865225 TA04055 Theileria annulata uncharacterized protein XP_955035.1 733877 D 5874 CDS TA04060 3865226 join(735621..736097,736131..736360,736391..737039) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.140 - score = 29.57; 12 probable transmembrane helices predicted for TA04060 by TMHMM2.0 at aa 37-59, 74-93, 106-128, 132-154, 167-184, 194-211, 236-258, 273-295, 302-321, 336-358, 370-392 and 407-429; uncharacterized protein 737039 3865226 TA04060 Theileria annulata uncharacterized protein XP_955036.1 735621 D 5874 CDS TA04065 3865381 join(737770..737823,737858..738726,738756..738839,738871..739003) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.141 - score = 33.29; uncharacterized protein 739003 3865381 TA04065 Theileria annulata uncharacterized protein XP_955037.1 737770 D 5874 CDS TA04070 3865382 complement(join(739193..739325,739356..739477,739524..739718,739754..739831)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.110 - score = 21.63; cyclophilin, putative 739831 3865382 TA04070 Theileria annulata cyclophilin, putative XP_955038.1 739193 R 5874 CDS TA04075 3865383 join(739965..740168,740212..740406) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.142 - score = 16.04; uncharacterized protein 740406 3865383 TA04075 Theileria annulata uncharacterized protein XP_955039.1 739965 D 5874 CDS TA04080 3865384 join(740422..740734,740768..740836,740874..740945,740981..741091,741121..741424,741454..741585,741625..741751,741783..741884) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.143 - score = 37.47; AAA family ATPase, putative 741884 3865384 TA04080 Theileria annulata AAA family ATPase, putative XP_955040.1 740422 D 5874 CDS TA04085 3865385 complement(742014..745361) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.109 - score = 76.38; uncharacterized protein 745361 3865385 TA04085 Theileria annulata uncharacterized protein XP_955041.1 742014 R 5874 CDS TA04095 3865387 join(746827..747077,747108..747186,747218..747300,747331..747481,747513..747656,747713..747862,747908..748069,748370..748603) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.144 - score = 21.03; 2 probable transmembrane helices predicted for TA04095 by TMHMM2.0 at aa 362-384 and 396-415; uncharacterized protein 748603 3865387 TA04095 Theileria annulata uncharacterized protein XP_955042.1 746827 D 5874 CDS TA04100 3865388 748630..749010 3 1 NC_011100.1 0513. Could not extend upstream; GPI-Anchor Signal predicted for TA04100 by DGPI v2.04 with cleavage site probability 0.1462 near 88; uncharacterized protein 749010 3865388 TA04100 Theileria annulata uncharacterized protein XP_955043.1 748630 D 5874 CDS TA04105 3865389 complement(join(749151..749347,749376..750281,750312..750416,750481..750630,750660..750781,750812..750915)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.108 - score = 45.42; Signal peptide predicted for TA04105 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.000) with cleavage site probability 0.822 between residues 20 and 21; cysteine proteinase, putative 750915 3865389 TA04105 Theileria annulata cysteine proteinase, putative XP_955044.1 749151 R 5874 CDS TA04110 3865390 complement(join(751401..751745,751776..751862,751892..751976,752006..752157)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.107 - score = 21.38; uncharacterized protein 752157 3865390 TA04110 Theileria annulata uncharacterized protein XP_955045.1 751401 R 5874 CDS TA04115 3865391 complement(join(752673..752882,752913..753026)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.106 - score = 16.48; uncharacterized protein 753026 3865391 TA04115 Theileria annulata uncharacterized protein XP_955046.1 752673 R 5874 CDS TA04120 3865392 complement(join(753339..753490,753537..753638,753677..753928,753959..754499)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.105 - score = 16.90; 3 probable transmembrane helices predicted for TA04120 by TMHMM2.0 at aa 198-220, 243-265 and 299-321; mitochondrial carrier, putative 754499 3865392 TA04120 Theileria annulata mitochondrial carrier, putative XP_955047.1 753339 R 5874 CDS TA04125 3865393 755017..759066 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.145 - score = 83.69; uncharacterized protein 759066 3865393 TA04125 Theileria annulata uncharacterized protein XP_955048.1 755017 D 5874 CDS TA04130 3865394 complement(join(759209..759816,759851..760113,760208..760338)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.104 - score = 19.02; uncharacterized protein 760338 3865394 TA04130 Theileria annulata uncharacterized protein XP_955049.1 759209 R 5874 CDS TA04135 3865395 join(760641..760748,760779..760920,760994..761059,761122..761190,761411..761625) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.146 - score = 12.51; uncharacterized protein 761625 3865395 TA04135 Theileria annulata uncharacterized protein XP_955050.1 760641 D 5874 CDS TA04140 3865396 complement(join(761946..762200,762286..762483)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.103 - score = 12.07; uncharacterized protein 762483 3865396 TA04140 Theileria annulata uncharacterized protein XP_955051.1 761946 R 5874 CDS TA04155 3865399 762785..763417 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.147 - score = 15.12; Signal peptide predicted for TA04155 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.832 between residues 18 and 19; GPI-Anchor Signal predicted for TA04155 by DGPI v2.04, no cleavage site predicted; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative 763417 3865399 TA04155 Theileria annulata 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative XP_955052.1 762785 D 5874 CDS TA04160 3865020 complement(join(763497..763844,763972..764117,764199..764829)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.102 - score = 23.66; uncharacterized protein 764829 3865020 TA04160 Theileria annulata uncharacterized protein XP_955053.1 763497 R 5874 CDS TA04165 3865021 765431..770524 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.148 - score = 121.79; uncharacterized protein 770524 3865021 TA04165 Theileria annulata uncharacterized protein XP_955054.1 765431 D 5874 CDS TA04170 3865022 complement(join(770583..770702,770772..772876,772961..773777)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.101 - score = 42.77; 12 probable transmembrane helices predicted for TA04170 by TMHMM2.0 at aa 343-362, 369-391, 411-433, 519-538, 543-565, 627-649, 691-713, 726-748, 763-781, 788-807, 822-844 and 950-972; uncharacterized protein 773777 3865022 TA04170 Theileria annulata uncharacterized protein XP_955055.1 770583 R 5874 CDS TA04175 3865023 774650..774898 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA04175 by TMHMM2.0 at aa 49-71; protein translocation complex subunit (SEC61 gamma chain), putative 774898 3865023 TA04175 Theileria annulata protein translocation complex subunit (SEC61 gamma chain), putative XP_955056.1 774650 D 5874 CDS TA04180 3865024 join(775276..775296,775390..775500,775656..775808) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.149 - score = 7.74; 60S ribosomal protein L37a(e), putative 775808 3865024 TA04180 Theileria annulata 60S ribosomal protein L37a(e), putative XP_955057.1 775276 D 5874 CDS TA04185 3865025 complement(join(775873..776112,776219..776560)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.100 - score = 13.89; uncharacterized protein 776560 3865025 TA04185 Theileria annulata uncharacterized protein XP_955058.1 775873 R 5874 CDS TA04190 3865026 join(777477..778509,778645..778967) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.150 - score = 37.57; DEAD-box family helicase, putative 778967 3865026 TA04190 Theileria annulata DEAD-box family helicase, putative XP_955059.1 777477 D 5874 CDS TA04195 3865027 complement(join(779512..779651,779731..779925,780118..780252,780295..780471,780557..780875)) 3 1 NC_011100.1 9 probable transmembrane helices predicted for TA04195 by TMHMM2.0 at aa 7-24, 34-56, 69-91, 95-114, 127-149, 183-205, 225-247, 262-284 and 291-313; membrane transporter, putative 780875 3865027 TA04195 Theileria annulata membrane transporter, putative XP_955060.1 779512 R 5874 CDS TA04200 3865028 join(781268..781343,781401..781489,781516..781569,781634..785307,785425..785612,785669..786261) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.151 - score = 80.99; 12 probable transmembrane helices predicted for TA04200 by TMHMM2.0 at aa 84-102, 152-174, 313-335, 339-358, 572-594, 609-631, 1344-1366, 1376-1393, 1414-1436, 1456-1478, 1491-1511 and 1531-1553; cation-transporting ATPase, putative 786261 3865028 TA04200 Theileria annulata cation-transporting ATPase, putative XP_955061.1 781268 D 5874 CDS TA04210 3865030 complement(786356..787951) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.98 - score = 34.21; uncharacterized protein 787951 3865030 TA04210 Theileria annulata uncharacterized protein XP_955062.1 786356 R 5874 CDS TA04215 3865031 complement(join(788037..788092,788124..788187,788220..788526,788612..792525)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.97 - score = 65.60; uncharacterized protein 792525 3865031 TA04215 Theileria annulata uncharacterized protein XP_955063.1 788037 R 5874 CDS TA04220 3865032 793084..793446 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.153 - score = 8.86; 1 probable transmembrane helix predicted for TA04220 by TMHMM2.0 at aa 101-119; uncharacterized protein 793446 3865032 TA04220 Theileria annulata uncharacterized protein XP_955064.1 793084 D 5874 CDS TA04225 3865033 complement(793578..796334) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.96 - score = 47.46; 1 probable transmembrane helix predicted for TA04225 by TMHMM2.0 at aa 32-51; Signal anchor predicted for TA04225 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.813) with cleavage site probability 0.001 between residues 48 and 49; uncharacterized protein 796334 3865033 TA04225 Theileria annulata uncharacterized protein XP_955065.1 793578 R 5874 CDS TA04230 3865034 join(796581..796610,796717..796935,796967..797046,797076..797259,797286..797398,797430..797508,797571..797891,797920..798022,798052..798416,798498..798968,798999..799334,799366..799448,799481..799611,799641..799702,799733..799785,799818..799992,800027..800070,800213..801374,801406..801582) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.154 - score = 103.49; uncharacterized protein 801582 3865034 TA04230 Theileria annulata uncharacterized protein XP_955066.1 796581 D 5874 CDS TA04235 3865035 complement(801801..803156) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.95 - score = 14.17; 10 probable transmembrane helices predicted for TA04235 by TMHMM2.0 at aa 21-43, 115-137, 149-171, 176-198, 211-233, 265-287, 300-322, 345-367, 388-410 and 420-442; Tpr-related protein family member, putative 803156 3865035 TA04235 Theileria annulata Tpr-related protein family member, putative XP_955067.1 801801 R 5874 CDS TA04240 3865036 complement(803354..805534) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.94 - score = 47.70; 9 probable transmembrane helices predicted for TA04240 by TMHMM2.0 at aa 10-29, 84-106, 116-138, 145-167, 182-204, 276-298, 603-625, 646-668 and 673-695; Tpr-related protein family member, putative 805534 3865036 TA04240 Theileria annulata Tpr-related protein family member, putative XP_955068.1 803354 R 5874 CDS TA04245 3865037 complement(join(805705..805792,805826..805977,806026..806484,806538..806623,806660..806702,806849..806938)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.94 - score = 47.70; 1 probable transmembrane helix predicted for TA04245 by TMHMM2.0 at aa 278-300; syntaxin, putative 806938 3865037 TA04245 Theileria annulata syntaxin, putative XP_955069.1 805705 R 5874 CDS TA04250 3865038 join(807295..807429,807476..807576,807610..809700,809792..810149) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.156 - score = 63.08; uncharacterized protein 810149 3865038 TA04250 Theileria annulata uncharacterized protein XP_955070.1 807295 D 5874 CDS TA04255 3865039 complement(810266..811111) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.93 - score = 20.34; uncharacterized protein 811111 3865039 TA04255 Theileria annulata uncharacterized protein XP_955071.1 810266 R 5874 CDS TA04260 3864791 complement(join(811369..811857,811892..811987)) 3 1 NC_011100.1 uncharacterized protein 811987 3864791 TA04260 Theileria annulata uncharacterized protein XP_955072.1 811369 R 5874 CDS TA04265 3864792 complement(join(812054..812191,812260..812647,812731..814577)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.92 - score = 73.12; 3'-5' exonuclease, putative 814577 3864792 TA04265 Theileria annulata 3'-5' exonuclease, putative XP_955073.1 812054 R 5874 CDS TA04270 3864793 complement(join(814899..815036,815133..815222,815311..815358)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.91 - score = 51.97; small nuclear ribonucleoprotein (E), putative 815358 3864793 TA04270 Theileria annulata small nuclear ribonucleoprotein (E), putative XP_955074.1 814899 R 5874 CDS TA04275 3864794 complement(join(815548..815721,815805..815931,815984..816069,816099..816235,816287..816403,816440..816541,816573..816808,816879..817050,817084..817345)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.91 - score = 51.97; lysine-tRNA ligase, putative 817345 3864794 TA04275 Theileria annulata lysine-tRNA ligase, putative XP_955075.1 815548 R 5874 CDS TA04280 3864795 join(817861..818215,818278..818348,818394..818480,818550..818620,818652..818733) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.157 - score = 44.63; uncharacterized protein 818733 3864795 TA04280 Theileria annulata uncharacterized protein XP_955076.1 817861 D 5874 CDS TA04285 3864796 818896..819840 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.157 - score = 44.63; uncharacterized protein 819840 3864796 TA04285 Theileria annulata uncharacterized protein XP_955077.1 818896 D 5874 CDS TA04290 3864797 complement(join(819911..820190,820224..820531,820561..820599)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.90 - score = 19.91; uncharacterized protein 820599 3864797 TA04290 Theileria annulata uncharacterized protein XP_955078.1 819911 R 5874 CDS TA04295 3864798 820883..821932 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.158 - score = 21.45; uncharacterized protein 821932 3864798 TA04295 Theileria annulata uncharacterized protein XP_955079.1 820883 D 5874 CDS TA04300 3864799 join(822352..822696,822750..823448,823551..823886) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.159 - score = 32.49; uncharacterized protein 823886 3864799 TA04300 Theileria annulata uncharacterized protein XP_955080.1 822352 D 5874 CDS TA04305 3864800 complement(join(823961..824643,824719..826617,826696..828265)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.89 - score = 90.99; uncharacterized protein 828265 3864800 TA04305 Theileria annulata uncharacterized protein XP_955081.1 823961 R 5874 CDS TA04320 3864803 join(828536..829510,829580..830252,830286..830423,830471..830851,830961..831647,831723..831874) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.160 - score = 63.88; DEAD-box family helicase, putative 831874 3864803 TA04320 Theileria annulata DEAD-box family helicase, putative XP_955082.1 828536 D 5874 CDS TA04325 3864804 complement(join(832062..833033,833065..833155,833223..833344,833455..834871,834958..836624)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.88 - score = 98.86; DNA repair (RAD6) endonuclease, putative 836624 3864804 TA04325 Theileria annulata DNA repair (RAD6) endonuclease, putative XP_955083.1 832062 R 5874 CDS TA04330 3864805 join(836899..836938,836980..837064,837159..837339,837421..837795) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.162 - score = 19.16; uncharacterized protein 837795 3864805 TA04330 Theileria annulata uncharacterized protein XP_955084.1 836899 D 5874 CDS TA04335 3864806 838246..840555 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.163 - score = 57.33; 7 probable transmembrane helices predicted for TA04335 by TMHMM2.0 at aa 368-390, 410-432, 447-469, 579-601, 606-623, 628-650 and 738-760; uncharacterized protein 840555 3864806 TA04335 Theileria annulata uncharacterized protein XP_955085.1 838246 D 5874 CDS TA04340 3864807 join(840705..840725,840802..841148,841231..841303,841332..841455,841490..841650,841690..841767) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.163 - score = 57.33; RNA processing factor, putative 841767 3864807 TA04340 Theileria annulata RNA processing factor, putative XP_955086.1 840705 D 5874 CDS TA04345 3864808 complement(join(842113..842151,842254..842994)) 3 1 NC_011100.1 note; 1 probable transmembrane helix predicted for TA04345 by TMHMM2.0 at aa 213-235; uncharacterized protein 842994 3864808 TA04345 Theileria annulata uncharacterized protein XP_955087.1 842113 R 5874 CDS TA04350 3864809 complement(join(843238..844891,844930..844955)) 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA04350 by TMHMM2.0 at aa 7-29; uncharacterized protein 844955 3864809 TA04350 Theileria annulata uncharacterized protein XP_955088.1 843238 R 5874 CDS TA04355 3865227 complement(845076..848108) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.87 - score = 121.92; uncharacterized protein 848108 3865227 TA04355 Theileria annulata uncharacterized protein XP_955089.1 845076 R 5874 CDS TA04365 3865228 join(850560..852395,852476..853431,853521..853947) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.165 - score = 83.06; uncharacterized protein 853947 3865228 TA04365 Theileria annulata uncharacterized protein XP_955090.1 850560 D 5874 CDS TA04370 3865229 join(854637..854826,854907..855133,855229..855390,855425..855598,855701..856289,856376..856424,856472..856535) 3 1 NC_011100.1 12 probable transmembrane helices predicted for TA04370 by TMHMM2.0 at aa 32-54, 64-86, 99-118, 128-150, 171-190, 195-213, 245-264, 274-296, 305-324, 339-361, 374-393 and 408-430; uncharacterized protein 856535 3865229 TA04370 Theileria annulata uncharacterized protein XP_955091.1 854637 D 5874 CDS TA04375 3865230 856692..857513 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.166 - score = 29.44; Signal peptide predicted for TA04375 by SignalP 2.0 HMM (Signal peptide probability 0.706, signal anchor probability 0.161) with cleavage site probability 0.272 between residues 27 and 28; prohibitin, putative 857513 3865230 TA04375 Theileria annulata prohibitin, putative XP_955092.1 856692 D 5874 CDS TA04380 3865231 complement(join(857662..857888,857962..859075)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.86 - score = 21.87; 4 probable transmembrane helices predicted for TA04380 by TMHMM2.0 at aa 212-234, 288-310, 339-361 and 391-413; uncharacterized protein 859075 3865231 TA04380 Theileria annulata uncharacterized protein XP_955093.1 857662 R 5874 CDS TA04385 3865232 join(859245..859737,859850..860420,860549..861111,861233..861486,861601..861870) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.167 - score = 51.49; 1 probable transmembrane helix predicted for TA04385 by TMHMM2.0 at aa 692-714; neutral sphingomyelinase, putative 861870 3865232 TA04385 Theileria annulata neutral sphingomyelinase, putative XP_955094.1 859245 D 5874 CDS TA04390 3865233 join(861911..862058,862100..862602,862640..862742,862777..863315) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.167 - score = 51.49; 2 probable transmembrane helices predicted for TA04390 by TMHMM2.0 at aa 5-27 and 188-210; Signal peptide predicted for TA04390 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.002) with cleavage site probability 0.438 between residues 22 and 23; uncharacterized protein 863315 3865233 TA04390 Theileria annulata uncharacterized protein XP_955095.1 861911 D 5874 CDS TA04395 3865234 complement(join(863412..863648,863788..863908,863994..864419,864567..865258)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.85 - score = 26.90; 2 probable transmembrane helices predicted for TA04395 by TMHMM2.0 at aa 5-27 and 462-479; GPI-Anchor Signal predicted for TA04395 by DGPI v2.04, no cleavage site predicted; oxidoreductin, putative 865258 3865234 TA04395 Theileria annulata oxidoreductin, putative XP_955096.1 863412 R 5874 CDS TA04400 3865235 join(865707..865884,866023..866269,866371..866446) 3 1 NC_011100.1 mitochondrial import inner membrane translocase subunit, putative 866446 3865235 TA04400 Theileria annulata mitochondrial import inner membrane translocase subunit, putative XP_955097.1 865707 D 5874 CDS TA04405 3865236 complement(join(866494..866646,866756..866843,866927..867149,867410..867482,867564..867634,867733..867835,867875..867925)) 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA04405 by TMHMM2.0 at aa 13-35; uncharacterized protein 867925 3865236 TA04405 Theileria annulata uncharacterized protein XP_955098.1 866494 R 5874 CDS TA04410 3865237 complement(868009..869565) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.83 - score = 31.76; uncharacterized protein 869565 3865237 TA04410 Theileria annulata uncharacterized protein XP_955099.1 868009 R 5874 CDS TA04415 3865238 join(869814..869844,869961..870123,870236..870396,870522..870718) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.169 - score = 13.30; uncharacterized protein 870718 3865238 TA04415 Theileria annulata uncharacterized protein XP_955100.1 869814 D 5874 CDS TA04430 3865241 complement(870909..873686) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.82 - score = 49.91; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA04430 by SignalP 2.0 HMM (Signal peptide probability 0.781, signal anchor probability 0.013) with cleavage site probability 0.664 between residues 21 and 22; leucyl-tRNA synthetase, putative 873686 3865241 TA04430 Theileria annulata leucyl-tRNA synthetase, putative XP_955101.1 870909 R 5874 CDS TA04435 3865242 join(874040..874113,874231..874378,874487..874739,874915..875178,875304..875677) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.170 - score = 16.13; uncharacterized protein 875677 3865242 TA04435 Theileria annulata uncharacterized protein XP_955102.1 874040 D 5874 CDS TA04440 3865243 join(875971..876022,876092..876381) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA04440 by TMHMM2.0 at aa 7-29 and 74-96; U6 snRNA-associated Sm-like protein, putative 876381 3865243 TA04440 Theileria annulata U6 snRNA-associated Sm-like protein, putative XP_955103.1 875971 D 5874 CDS TA04445 3865244 complement(join(876448..876647,876675..876957,877086..877421)) 3 1 NC_011100.1 uncharacterized protein 877421 3865244 TA04445 Theileria annulata uncharacterized protein XP_955104.1 876448 R 5874 CDS TA04450 3865245 join(877893..878089,878187..878385,878489..879224,879312..879796) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.171 - score = 49.51; 1 probable transmembrane helix predicted for TA04450 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA04450 by SignalP 2.0 HMM (Signal peptide probability 0.785, signal anchor probability 0.190) with cleavage site probability 0.384 between residues 26 and 27; protein disulfide isomerase, putative 879796 3865245 TA04450 Theileria annulata protein disulfide isomerase, putative XP_955105.1 877893 D 5874 CDS TA04455 3865246 join(880123..880257,880321..880463,880576..880692,880726..880948) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.172 - score = 9.76; dehydrodolichyl diphosphate synthase, putative 880948 3865246 TA04455 Theileria annulata dehydrodolichyl diphosphate synthase, putative XP_955106.1 880123 D 5874 CDS TA04460 3865266 join(881419..881825,881882..882488) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.173 - score = 13.73; 4 probable transmembrane helices predicted for TA04460 by TMHMM2.0 at aa 22-44, 187-209, 224-246 and 291-313; Tpr-related protein family member, putative 882488 3865266 TA04460 Theileria annulata Tpr-related protein family member, putative XP_955107.1 881419 D 5874 CDS TA04465 3865267 882649..884223 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.174 - score = 16.66; 11 probable transmembrane helices predicted for TA04465 by TMHMM2.0 at aa 26-48, 77-99, 143-165, 177-199, 204-226, 239-261, 297-319, 332-350, 379-401, 421-443 and 448-470; Tpr-related protein family member, putative 884223 3865267 TA04465 Theileria annulata Tpr-related protein family member, putative XP_955108.1 882649 D 5874 CDS TA04470 3865268 complement(884293..885693) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.80 - score = 26.02; uncharacterized protein 885693 3865268 TA04470 Theileria annulata uncharacterized protein XP_955109.1 884293 R 5874 CDS TA04475 3865269 complement(join(886642..886801,886843..886935,886967..887013,887181..887275,887351..887453)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.79 - score = 16.04; uncharacterized protein 887453 3865269 TA04475 Theileria annulata uncharacterized protein XP_955110.1 886642 R 5874 CDS TA04485 3865271 join(887606..887762,887851..887940,887976..888144,888181..888334,888386..888520,888547..888604,888636..888693,888777..888960,889001..889053,889109..889164,889196..889235,889323..889416,889483..889573,889645..889740,889791..889888) 3 1 NC_011100.1 note; DNA primase large subunit, putative 889888 3865271 TA04485 Theileria annulata DNA primase large subunit, putative XP_955111.1 887606 D 5874 CDS TA04490 3865272 join(890126..890220,890258..898298) 3 1 NC_011100.1 Tap-24g11.q1c.cand.176 - score = 191.21; SfiI-subtelomeric fragment related protein family member, putative 898298 3865272 TA04490 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955112.1 890126 D 5874 CDS TA04495 3865273 complement(join(899333..899585,899729..900332,900387..900434,900466..900622)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.78 - score = 25.56; uncharacterized protein 900622 3865273 TA04495 Theileria annulata uncharacterized protein XP_955113.1 899333 R 5874 CDS TA04500 3865274 join(901081..901177,901274..901485,901557..901683,901721..901823,901929..902015,902047..902132,902255..902826) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.177 - score = 34.75; phosphatidylinositol-4-phosphate (PIP) 5-kinase, putative 902826 3865274 TA04500 Theileria annulata phosphatidylinositol-4-phosphate (PIP) 5-kinase, putative XP_955114.1 901081 D 5874 CDS TA04505 3865275 complement(902991..903194) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.77 - score = 7.03; 40S ribosomal protein S28, putative 903194 3865275 TA04505 Theileria annulata 40S ribosomal protein S28, putative XP_955115.1 902991 R 5874 CDS TA04510 3865276 complement(join(903563..903735,903801..903955,904027..904134,904202..904335)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.76 - score = 37.97; U3 small nucleolar ribonucleoprotein or 40S ribosomal protein S4-like, putative 904335 3865276 TA04510 Theileria annulata U3 small nucleolar ribonucleoprotein or 40S ribosomal protein S4-like, putative XP_955116.1 903563 R 5874 CDS TA04515 3865277 complement(join(904467..905020,905060..905237,905284..905570,905639..905792)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.76 - score = 37.97; uncharacterized protein 905792 3865277 TA04515 Theileria annulata uncharacterized protein XP_955117.1 904467 R 5874 CDS TA04520 3865278 join(905936..905948,906044..906319,906377..906458,906522..906721,906860..906946,907005..907081,907138..907320) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.178 - score = 13.36; 4 probable transmembrane helices predicted for TA04520 by TMHMM2.0 at aa 64-86, 101-123, 204-226 and 268-290; mitochondrial carrier, putative 907320 3865278 TA04520 Theileria annulata mitochondrial carrier, putative XP_955118.1 905936 D 5874 CDS TA04525 3865279 join(907534..907668,907792..907898,907931..908054,908167..908301,908334..908435,908495..908560,908591..908662,908735..908893) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.179 - score = 27.73; replication factor, putative 908893 3865279 TA04525 Theileria annulata replication factor, putative XP_955119.1 907534 D 5874 CDS TA04530 3865280 complement(join(909283..910068,910127..910223,910330..910985,911057..911218)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.75 - score = 42.26; DEAD-box family (RNA) helicase, putative 911218 3865280 TA04530 Theileria annulata DEAD-box family (RNA) helicase, putative XP_955120.1 909283 R 5874 CDS TA04535 3865281 join(911379..911903,911990..912087,912149..912189,912224..912378) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.180 - score = 28.00; uncharacterized protein 912378 3865281 TA04535 Theileria annulata uncharacterized protein XP_955121.1 911379 D 5874 CDS TA04540 3865282 complement(join(912499..912651,912681..912724,912986..913182,913251..913392,913459..913519,913550..913747,913835..913896,913947..914179,914209..914762,914827..914901,914932..915068,915109..915289,915354..915437)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.74 - score = 65.90; spliceosome-associated protein, putative 915437 3865282 TA04540 Theileria annulata spliceosome-associated protein, putative XP_955122.1 912499 R 5874 CDS TA04545 3865283 complement(join(915609..915733,915781..915811,915869..915976,916071..916214)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.73 - score = 12.23; 1 probable transmembrane helix predicted for TA04545 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA04545 by SignalP 2.0 HMM (Signal peptide probability 0.831, signal anchor probability 0.023) with cleavage site probability 0.659 between residues 21 and 22; uncharacterized protein 916214 3865283 TA04545 Theileria annulata uncharacterized protein XP_955123.1 915609 R 5874 CDS TA04550 3865284 join(917997..918891,918959..920169) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.181 - score = 54.59; uncharacterized protein 920169 3865284 TA04550 Theileria annulata uncharacterized protein XP_955124.1 917997 D 5874 CDS TA04555 3864889 join(920631..921009,921043..922290,922349..922548,922580..922732) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.182 - score = 46.26; uncharacterized protein 922732 3864889 TA04555 Theileria annulata uncharacterized protein XP_955125.1 920631 D 5874 CDS TA04560 3864890 922910..923125 3 1 NC_011100.1 uncharacterized protein 923125 3864890 TA04560 Theileria annulata uncharacterized protein XP_955126.1 922910 D 5874 CDS TA04565 3864891 923424..924743 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.183 - score = 38.90; 10 probable transmembrane helices predicted for TA04565 by TMHMM2.0 at aa 28-50, 63-85, 89-111, 161-178, 191-213, 243-265, 285-307, 319-341, 356-378 and 411-433; GPI-Anchor Signal predicted for TA04565 by DGPI v2.04 with cleavage site probability 0.2924 near 402; uncharacterized protein 924743 3864891 TA04565 Theileria annulata uncharacterized protein XP_955127.1 923424 D 5874 CDS TA04570 3864892 join(925069..925216,925258..925805) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.184 - score = 21.33; 1 probable transmembrane helix predicted for TA04570 by TMHMM2.0 at aa 133-155; uncharacterized protein 925805 3864892 TA04570 Theileria annulata uncharacterized protein XP_955128.1 925069 D 5874 CDS TA04575 3864893 complement(join(925900..925965,925997..926076,926108..926252,926319..926745,926783..927273,927376..927494,927619..927769)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.70 - score = 41.34; DNA helicase (ruvB-like protein), putative 927769 3864893 TA04575 Theileria annulata DNA helicase (ruvB-like protein), putative XP_955129.1 925900 R 5874 CDS TA04580 3864894 complement(join(927953..928298,928333..928415,928466..928648)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.69 - score = 14.60; 2 probable transmembrane helices predicted for TA04580 by TMHMM2.0 at aa 15-37 and 95-117; uncharacterized protein 928648 3864894 TA04580 Theileria annulata uncharacterized protein XP_955130.1 927953 R 5874 CDS TA04590 3864896 join(928980..929142,929313..929468,929508..929788,929822..929878,929948..930115) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.185 - score = 25.19; proliferating cell nuclear antigen (PCNA) 1, putative 930115 3864896 TA04590 Theileria annulata proliferating cell nuclear antigen (PCNA) 1, putative XP_955131.1 928980 D 5874 CDS TA04595 3864897 complement(join(930232..930292,930322..930523,930599..930946,931099..931177)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.68 - score = 27.94; proteasome subunit, putative 931177 3864897 TA04595 Theileria annulata proteasome subunit, putative XP_955132.1 930232 R 5874 CDS TA04600 3864898 complement(join(931319..931438,931518..931574,931619..931699,931804..932166,932198..932338,932369..932436,932516..932564)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.67 - score = 33.70; nucleosome assembly protein, putative 932564 3864898 TA04600 Theileria annulata nucleosome assembly protein, putative XP_955133.1 931319 R 5874 CDS TA04605 3864899 join(933326..933349,933392..933495,933699..933768,933851..933998,934065..934162) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.186 - score = 8.48; ubiquitin-conjugating enzyme E2, putative 934162 3864899 TA04605 Theileria annulata ubiquitin-conjugating enzyme E2, putative XP_955134.1 933326 D 5874 CDS TA04610 3864900 complement(join(934219..934402,934436..934668)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.66 - score = 12.23; uncharacterized protein 934668 3864900 TA04610 Theileria annulata uncharacterized protein XP_955135.1 934219 R 5874 CDS TA04615 3864901 join(935228..935553,935618..936717,936788..936979,937076..938703) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.187 - score = 75.08; 1 probable transmembrane helix predicted for TA04615 by TMHMM2.0 at aa 92-114; uncharacterized protein 938703 3864901 TA04615 Theileria annulata uncharacterized protein XP_955136.1 935228 D 5874 CDS TA04620 3864902 complement(join(939054..941644,941814..941909,941976..942041,942088..942153,942188..942218)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.64 - score = 69.15; uncharacterized protein 942218 3864902 TA04620 Theileria annulata uncharacterized protein XP_955137.1 939054 R 5874 CDS TA04625 3864903 complement(join(942601..942936,942970..943140,943317..943396,943433..943548,943593..943701,943747..943777)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.63 - score = 37.71; uncharacterized protein 943777 3864903 TA04625 Theileria annulata uncharacterized protein XP_955138.1 942601 R 5874 CDS TA04630 3864904 complement(join(943873..944398,944542..944740,944768..944867,944900..945108,945139..945652)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.62 - score = 52.90; uncharacterized protein 945652 3864904 TA04630 Theileria annulata uncharacterized protein XP_955139.1 943873 R 5874 CDS TA04635 3864905 complement(join(946050..946246,946278..946378,946408..946546,946576..946672,946702..946980,947011..947045,947078..947179,947212..947437)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.61 - score = 36.17; 6 probable transmembrane helices predicted for TA04635 by TMHMM2.0 at aa 126-148, 153-172, 177-199, 226-248, 253-275 and 346-363; Signal peptide predicted for TA04635 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.954 between residues 23 and 24; uncharacterized protein 947437 3864905 TA04635 Theileria annulata uncharacterized protein XP_955140.1 946050 R 5874 CDS TA04650 3864908 join(947737..948194,948247..948296,948379..948764) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.189 - score = 17.63; deaminase, putative 948764 3864908 TA04650 Theileria annulata deaminase, putative XP_955141.1 947737 D 5874 CDS TA04655 3865362 join(949516..949983,950045..950121,950174..950341,950378..950452,950544..951138) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.190 - score = 33.10; 2 probable transmembrane helices predicted for TA04655 by TMHMM2.0 at aa 128-150 and 157-179; uncharacterized protein 951138 3865362 TA04655 Theileria annulata uncharacterized protein XP_955142.1 949516 D 5874 CDS TA04660 3865363 complement(951280..952251) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.60 - score = 21.17; uncharacterized protein 952251 3865363 TA04660 Theileria annulata uncharacterized protein XP_955143.1 951280 R 5874 CDS TA04665 3865364 complement(join(952715..955191,955235..955781)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.59 - score = 83.46; uncharacterized protein 955781 3865364 TA04665 Theileria annulata uncharacterized protein XP_955144.1 952715 R 5874 CDS TA04670 3865365 complement(956974..958545) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.58 - score = 23.52; Signal peptide predicted for TA04670 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 958545 3865365 TA04670 Theileria annulata uncharacterized protein XP_955145.1 956974 R 5874 CDS TA09460 3864665 complement(959194..960765) 3 1 NC_011100.1 weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09460 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 960765 3864665 TA09460 Theileria annulata uncharacterized protein XP_955146.1 959194 R 5874 CDS TA09465 3864666 complement(961701..963269) 3 1 NC_011100.1 weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09465 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 963269 3864666 TA09465 Theileria annulata uncharacterized protein XP_955147.1 961701 R 5874 CDS TA09470 3864667 complement(963920..965491) 3 1 NC_011100.1 weak similarity to Theileria annulata Tash1; 2 probable transmembrane helices predicted for TA09470 by TMHMM2.0 at aa 4-22 and 203-225; Signal peptide predicted for TA09470 by SignalP 2.0 HMM (Signal peptide probability 0.957, signal anchor probability 0.000) with cleavage site probability 0.906 between residues 18 and 19; uncharacterized protein 965491 3864667 TA09470 Theileria annulata uncharacterized protein XP_955148.1 963920 R 5874 CDS TA09475 3864668 complement(966427..967995) 3 1 NC_011100.1 weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09475 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 967995 3864668 TA09475 Theileria annulata uncharacterized protein XP_955149.1 966427 R 5874 CDS TA09480 3864669 complement(968933..970504) 3 1 NC_011100.1 weak similarity to Theileria annulata Tash1; Signal peptide predicted for TA09480 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 970504 3864669 TA09480 Theileria annulata uncharacterized protein XP_955150.1 968933 R 5874 CDS TA09485 3864670 complement(971441..973000) 3 1 NC_011100.1 weak similarity to Theileria annulata Tash1; 2 probable transmembrane helices predicted for TA09485 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA09485 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 973000 3864670 TA09485 Theileria annulata uncharacterized protein XP_955151.1 971441 R 5874 CDS TA09490 3864671 complement(973939..975504) 3 1 NC_011100.1 weak similarity to Theileria annulata Tash1; 2 probable transmembrane helices predicted for TA09490 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA09490 by SignalP 2.0 HMM (Signal peptide probability 0.957, signal anchor probability 0.000) with cleavage site probability 0.906 between residues 18 and 19; uncharacterized protein 975504 3864671 TA09490 Theileria annulata uncharacterized protein XP_955152.1 973939 R 5874 CDS TA09495 3864672 join(976189..976448,976478..976771,976803..977723,977804..977915,977944..978086,978162..978279) 3 1 NC_011100.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA09495 by SignalP 2.0 HMM (Signal peptide probability 0.826, signal anchor probability 0.017) with cleavage site probability 0.607 between residues 17 and 18; methionine aminopeptidase, putative 978279 3864672 TA09495 Theileria annulata methionine aminopeptidase, putative XP_955153.1 976189 D 5874 CDS TA09500 3865305 complement(978446..980023) 3 1 NC_011100.1 Signal peptide predicted for TA09500 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 980023 3865305 TA09500 Theileria annulata uncharacterized protein XP_955154.1 978446 R 5874 CDS TA04675 3865366 complement(join(980905..981784,981817..982481)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.57 - score = 33.43; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA04675 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 982481 3865366 TA04675 Theileria annulata uncharacterized protein XP_955155.1 980905 R 5874 CDS TA04680 3865367 complement(983319..984890) 3 1 NC_011100.1 Signal peptide predicted for TA04680 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 984890 3865367 TA04680 Theileria annulata uncharacterized protein XP_955156.1 983319 R 5874 CDS TA04685 3865368 complement(985825..987399) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.55 - score = 22.55; Signal peptide predicted for TA04685 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 987399 3865368 TA04685 Theileria annulata uncharacterized protein XP_955157.1 985825 R 5874 CDS TA04690 3865369 complement(988334..989905) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.54 - score = 22.92; 2 probable transmembrane helices predicted for TA04690 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA04690 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 989905 3865369 TA04690 Theileria annulata uncharacterized protein XP_955158.1 988334 R 5874 CDS TA04695 3865370 complement(join(990842..991724,991758..992407)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.53 - score = 23.67; 2 probable transmembrane helices predicted for TA04695 by TMHMM2.0 at aa 4-22 and 76-98; Signal peptide predicted for TA04695 by SignalP 2.0 HMM (Signal peptide probability 0.903, signal anchor probability 0.000) with cleavage site probability 0.847 between residues 18 and 19; uncharacterized protein 992407 3865370 TA04695 Theileria annulata uncharacterized protein XP_955159.1 990842 R 5874 CDS TA04705 3865372 complement(join(993937..994807,994876..995528)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.52 - score = 27.79; Signal peptide predicted for TA04705 by SignalP 2.0 HMM (Signal peptide probability 0.782, signal anchor probability 0.000) with cleavage site probability 0.307 between residues 19 and 20; uncharacterized protein 995528 3865372 TA04705 Theileria annulata uncharacterized protein XP_955160.1 993937 R 5874 CDS TA04710 3865373 join(996373..996663,996708..996839,996883..996940,996970..997169) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.191 - score = 20.35; uncharacterized protein 997169 3865373 TA04710 Theileria annulata uncharacterized protein XP_955161.1 996373 D 5874 CDS TA04715 3865374 complement(join(997247..998496,998576..999811,999842..999896)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.51 - score = 257.55; uncharacterized protein 999896 3865374 TA04715 Theileria annulata uncharacterized protein XP_955162.1 997247 R 5874 CDS TA04720 3865375 complement(join(999959..1000977,1001050..1005658)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.51 - score = 257.55; uncharacterized protein 1005658 3865375 TA04720 Theileria annulata uncharacterized protein XP_955163.1 999959 R 5874 CDS TA04725 3865376 complement(join(1006024..1009128,1009195..1009413,1009495..1009728)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.51 - score = 257.55; uncharacterized protein 1009728 3865376 TA04725 Theileria annulata uncharacterized protein XP_955164.1 1006024 R 5874 CDS TA04730 3865377 join(1009979..1010222,1010305..1010528,1010558..1010641,1010670..1010769,1011004..1011056,1011086..1011205,1011235..1011294) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.192 - score = 20.70; uncharacterized protein 1011294 3865377 TA04730 Theileria annulata uncharacterized protein XP_955165.1 1009979 D 5874 CDS TA04735 3865378 complement(1011385..1011669) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.50 - score = 13.84; high-mobility-group (HMG) protein, putative 1011669 3865378 TA04735 Theileria annulata high-mobility-group (HMG) protein, putative XP_955166.1 1011385 R 5874 CDS TA04740 3865379 join(1012545..1012845,1012980..1013167,1013329..1013508,1013699..1014147,1014310..1014476,1014558..1014648,1014743..1014962,1015065..1015514) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.193 - score = 21.90; origin recognition complex protein 1, putative 1015514 3865379 TA04740 Theileria annulata origin recognition complex protein 1, putative XP_955167.1 1012545 D 5874 CDS TA04745 3865380 complement(join(1015689..1015878,1015919..1016070)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.49 - score = 12.63; uncharacterized protein 1016070 3865380 TA04745 Theileria annulata uncharacterized protein XP_955168.1 1015689 R 5874 CDS TA04750 3865285 complement(1016779..1018890) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.48 - score = 32.59; uncharacterized protein 1018890 3865285 TA04750 Theileria annulata uncharacterized protein XP_955169.1 1016779 R 5874 CDS TA04755 3865286 complement(join(1019165..1019819,1019933..1020873)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.47 - score = 22.84; uncharacterized protein 1020873 3865286 TA04755 Theileria annulata uncharacterized protein XP_955170.1 1019165 R 5874 CDS TA04760 3865287 join(1020991..1021006,1021073..1021183,1021299..1021380,1021413..1021596,1021689..1021779,1021874..1022034) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.194 - score = 16.59; uncharacterized protein 1022034 3865287 TA04760 Theileria annulata uncharacterized protein XP_955171.1 1020991 D 5874 CDS TA04765 3865288 complement(join(1022963..1023131,1023215..1025315,1025393..1025516)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.46 - score = 39.19; DEAD-box family (RNA) helicase, putative 1025516 3865288 TA04765 Theileria annulata DEAD-box family (RNA) helicase, putative XP_955172.1 1022963 R 5874 CDS TA04770 3865289 join(1026425..1026477,1026784..1026961,1027195..1027951,1028318..1029391,1029678..1031945,1032191..1032381) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.195 - score = 47.36; 8 probable transmembrane helices predicted for TA04770 by TMHMM2.0 at aa 550-572, 593-615, 1269-1291, 1298-1320, 1351-1373, 1380-1402, 1417-1439 and 1446-1468; P-type ATPase 2, putative 1032381 3865289 TA04770 Theileria annulata P-type ATPase 2, putative XP_955173.1 1026425 D 5874 CDS TA04775 3865290 complement(join(1032697..1033748,1033962..1035392,1035847..1036710,1037237..1038706,1039098..1039522,1039890..1040556,1040890..1041148,1041215..1041253)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.45 - score = 35.92; clathrin heavy chain, putative 1041253 3865290 TA04775 Theileria annulata clathrin heavy chain, putative XP_955174.1 1032697 R 5874 CDS TA04780 3865291 join(1041522..1041627,1041692..1041863,1042153..1042243,1042378..1042560,1042741..1042917,1043621..1043701,1043775..1043924) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.196 - score = 7.75; uncharacterized protein 1043924 3865291 TA04780 Theileria annulata uncharacterized protein XP_955175.1 1041522 D 5874 CDS TA04785 3865292 1044065..1044622 3 1 NC_011100.1 5 probable transmembrane helices predicted for TA04785 by TMHMM2.0 at aa 4-21, 28-50, 89-111, 118-137 and 160-182; Signal peptide predicted for TA04785 by SignalP 2.0 HMM (Signal peptide probability 0.906, signal anchor probability 0.094) with cleavage site probability 0.190 between residues 49 and 50; GPI-Anchor Signal predicted for TA04785 by DGPI v2.04 with cleavage site probability 0.59159994 near 156; Tpr-related protein family member, putative 1044622 3865292 TA04785 Theileria annulata Tpr-related protein family member, putative XP_955176.1 1044065 D 5874 CDS TA04790 3865293 join(1044659..1045798,1045834..1046245,1046314..1048376) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.198 - score = 98.17; 3 probable transmembrane helices predicted for TA04790 by TMHMM2.0 at aa 12-34, 220-242 and 357-379; Tpr-related protein family member, putative 1048376 3865293 TA04790 Theileria annulata Tpr-related protein family member, putative XP_955177.1 1044659 D 5874 CDS TA04795 3865294 join(1048467..1048737,1048812..1049440) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.199 - score = 20.18; Signal peptide predicted for TA04795 by SignalP 2.0 HMM (Signal peptide probability 0.912, signal anchor probability 0.003) with cleavage site probability 0.360 between residues 16 and 17; uncharacterized protein 1049440 3865294 TA04795 Theileria annulata uncharacterized protein XP_955178.1 1048467 D 5874 CDS TA04800 3865295 join(1049710..1049973,1050008..1050121) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.199 - score = 20.18; uncharacterized protein 1050121 3865295 TA04800 Theileria annulata uncharacterized protein XP_955179.1 1049710 D 5874 CDS TA04810 3865297 complement(join(1050423..1050719,1050827..1050964,1051086..1051192,1051521..1051694,1051812..1052229)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.41 - score = 22.29; 1 probable transmembrane helix predicted for TA04810 by TMHMM2.0 at aa 112-134; uncharacterized protein 1052229 3865297 TA04810 Theileria annulata uncharacterized protein XP_955180.1 1050423 R 5874 CDS TA04815 3865298 join(1052813..1052907,1053292..1053499,1053746..1053873,1054266..1054410,1054689..1054825,1055257..1055798,1056322..1059064,1059863..1061159) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.200 - score = 36.74; 2 probable transmembrane helices predicted for TA04815 by TMHMM2.0 at aa 576-595 and 683-705; uncharacterized protein 1061159 3865298 TA04815 Theileria annulata uncharacterized protein XP_955181.1 1052813 D 5874 CDS TA04820 3865299 complement(join(1061595..1062129,1062173..1063668)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.40 - score = 48.41; 3 probable transmembrane helices predicted for TA04820 by TMHMM2.0 at aa 33-55, 411-433 and 459-481; uncharacterized protein 1063668 3865299 TA04820 Theileria annulata uncharacterized protein XP_955182.1 1061595 R 5874 CDS TA04825 3865300 complement(join(1063755..1064684,1064759..1065835,1065959..1066353,1066557..1066858,1066913..1067598)) 3 1 NC_011100.1 5 probable transmembrane helices predicted for TA04825 by TMHMM2.0 at aa 2-21, 65-87, 147-169, 173-192 and 357-379; Signal peptide predicted for TA04825 by SignalP 2.0 HMM (Signal peptide probability 0.837, signal anchor probability 0.000) with cleavage site probability 0.244 between residues 15 and 16; GPI-Anchor Signal predicted for TA04825 by DGPI v2.04 with cleavage site probability 2.1199 near 1096; uncharacterized protein 1067598 3865300 TA04825 Theileria annulata uncharacterized protein XP_955183.1 1063755 R 5874 CDS TA04830 3865301 complement(join(1067609..1068005,1068292..1068309,1068481..1068530,1068578..1068872,1068989..1069071)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.39 - score = 25.71; 4 probable transmembrane helices predicted for TA04830 by TMHMM2.0 at aa 5-22, 52-71, 83-105 and 120-142; Signal peptide predicted for TA04830 by SignalP 2.0 HMM (Signal peptide probability 0.721, signal anchor probability 0.110) with cleavage site probability 0.340 between residues 21 and 22; uncharacterized protein 1069071 3865301 TA04830 Theileria annulata uncharacterized protein XP_955184.1 1067609 R 5874 CDS TA04835 3865302 complement(join(1069377..1069532,1069587..1069714,1069807..1069902,1070080..1070347,1070436..1070555)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.38 - score = 10.66; 1 probable transmembrane helix predicted for TA04835 by TMHMM2.0 at aa 7-24; uncharacterized protein 1070555 3865302 TA04835 Theileria annulata uncharacterized protein XP_955185.1 1069377 R 5874 CDS TA04840 3865303 join(1070683..1070945,1071070..1071223) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.203 - score = 34.96; 60S ribosomal L34 protein, putative 1071223 3865303 TA04840 Theileria annulata 60S ribosomal L34 protein, putative XP_955186.1 1070683 D 5874 CDS TA04845 3865304 join(1071593..1071764,1072016..1072121,1072314..1072536,1072592..1072645,1072960..1073442,1073661..1074372,1074766..1074905) 3 1 NC_011100.1 aspartyl-tRNA synthetase, putative 1074905 3865304 TA04845 Theileria annulata aspartyl-tRNA synthetase, putative XP_955187.1 1071593 D 5874 CDS TA04855 3864929 complement(join(1076974..1077248,1077436..1077611,1077681..1077924,1078333..1078878,1079130..1079480,1079587..1080021,1080269..1080959)) 3 1 NC_011100.1 note; cell divison cycle CDC48 homologue or transitional endoplasmic reticulum ATPase 1080959 3864929 TA04855 Theileria annulata cell divison cycle CDC48 homologue or transitional endoplasmic reticulum ATPase XP_955188.1 1076974 R 5874 CDS TA04865 3864931 join(1081486..1081729,1082043..1082116,1082146..1082280,1082572..1082812,1083080..1083336,1083510..1084440,1084511..1084583,1084622..1084652,1084731..1085119,1085278..1085446) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.204 - score = 28.31; DNA mismatch repair protein, putative 1085446 3864931 TA04865 Theileria annulata DNA mismatch repair protein, putative XP_955189.1 1081486 D 5874 CDS TA04870 3864932 1085657..1092625 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.205 - score = 95.22; uncharacterized protein 1092625 3864932 TA04870 Theileria annulata uncharacterized protein XP_955190.1 1085657 D 5874 CDS TA04875 3864933 complement(join(1092847..1094885,1094999..1096273,1096421..1097933)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.35 - score = 97.69; ubiquitin carboxyl-terminal hydrolase, putative 1097933 3864933 TA04875 Theileria annulata ubiquitin carboxyl-terminal hydrolase, putative XP_955191.1 1092847 R 5874 CDS TA04880 3864934 join(1098638..1098770,1098828..1098897,1098979..1099303) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.206 - score = 15.20; uncharacterized protein 1099303 3864934 TA04880 Theileria annulata uncharacterized protein XP_955192.1 1098638 D 5874 CDS TA04885 3864935 complement(1099328..1100428) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.34 - score = 23.03; nucleolar protein, putative 1100428 3864935 TA04885 Theileria annulata nucleolar protein, putative XP_955193.1 1099328 R 5874 CDS TA04890 3864936 1100613..1103393 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.207 - score = 54.05; uncharacterized protein 1103393 3864936 TA04890 Theileria annulata uncharacterized protein XP_955194.1 1100613 D 5874 CDS TA04895 3864937 1104039..1105520 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.208 - score = 21.89; uncharacterized protein 1105520 3864937 TA04895 Theileria annulata uncharacterized protein XP_955195.1 1104039 D 5874 CDS TA04900 3864938 complement(join(1105953..1106184,1106217..1106322,1106356..1106600,1106633..1106796,1106876..1107166)) 3 1 NC_011100.1 geranylgeranyltransferase beta subunit, putative 1107166 3864938 TA04900 Theileria annulata geranylgeranyltransferase beta subunit, putative XP_955196.1 1105953 R 5874 CDS TA04905 3864939 join(1107360..1107454,1107502..1107617,1107647..1107809,1107839..1108323,1108355..1108401,1108444..1108683) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.209 - score = 83.58; uncharacterized protein 1108683 3864939 TA04905 Theileria annulata uncharacterized protein XP_955197.1 1107360 D 5874 CDS TA04910 3864940 join(1108927..1109204,1109223..1109267,1109302..1109395,1109525..1109656,1109698..1110033,1110045..1110149,1110206..1110370,1110401..1110523,1110552..1110764) 3 1 NC_011100.1 GTP-binding protein, putative 1110764 3864940 TA04910 Theileria annulata GTP-binding protein, putative XP_955198.1 1108927 D 5874 CDS TA04920 3864942 complement(join(1111068..1111165,1111195..1111402)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.32 - score = 11.41; uncharacterized protein 1111402 3864942 TA04920 Theileria annulata uncharacterized protein XP_955199.1 1111068 R 5874 CDS TA04925 3864943 1111507..1112121 3 1 NC_011100.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA04925 by TMHMM2.0 at aa 7-26 and 113-132; Signal peptide predicted for TA04925 by SignalP 2.0 HMM (Signal peptide probability 0.842, signal anchor probability 0.099) with cleavage site probability 0.597 between residues 23 and 24; uncharacterized protein 1112121 3864943 TA04925 Theileria annulata uncharacterized protein XP_955200.1 1111507 D 5874 CDS TA04930 3864944 complement(join(1112219..1112902,1112938..1113003)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.31 - score = 19.33; uncharacterized protein 1113003 3864944 TA04930 Theileria annulata uncharacterized protein XP_955201.1 1112219 R 5874 CDS TA04935 3864945 join(1113120..1113214,1113264..1113567,1113607..1113792,1113825..1113873,1113903..1114105) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.210 - score = 37.61; 1 probable transmembrane helix predicted for TA04935 by TMHMM2.0 at aa 7-29; Signal anchor predicted for TA04935 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.997) with cleavage site probability 0.001 between residues 35 and 36; uncharacterized protein 1114105 3864945 TA04935 Theileria annulata uncharacterized protein XP_955202.1 1113120 D 5874 CDS TA04940 3864946 complement(join(1114191..1114337,1114370..1114528,1114587..1114698,1114728..1114809,1114858..1115137,1115209..1115774,1115806..1116307)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.30 - score = 45.99; 1 probable transmembrane helix predicted for TA04940 by TMHMM2.0 at aa 7-29; tRNA nucleotidyltransferase, putative 1116307 3864946 TA04940 Theileria annulata tRNA nucleotidyltransferase, putative XP_955203.1 1114191 R 5874 CDS TA04945 3864947 join(1116440..1116664,1116703..1116816,1116860..1116962,1117331..1117395,1117433..1117894) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.211 - score = 27.95; uncharacterized protein 1117894 3864947 TA04945 Theileria annulata uncharacterized protein XP_955204.1 1116440 D 5874 CDS TA04950 3864692 complement(1118151..1119074) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.29 - score = 11.83; Apicoplast targetting peptide predicted by the PlasmoAP tool; 4 probable transmembrane helices predicted for TA04950 by TMHMM2.0 at aa 29-51, 61-83, 210-232 and 265-287; Signal anchor predicted for TA04950 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.911) with cleavage site probability 0.000 between residues 44 and 45; uncharacterized protein 1119074 3864692 TA04950 Theileria annulata uncharacterized protein XP_955205.1 1118151 R 5874 CDS TA04955 3864693 complement(join(1119321..1119401,1119434..1119511,1119581..1119710,1119749..1119881,1119910..1120048,1120153..1120328,1120429..1120593,1120624..1120726,1120756..1122423)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.28 - score = 73.03; cGMP-dependent protein kinase, putative 1122423 3864693 TA04955 Theileria annulata cGMP-dependent protein kinase, putative XP_955206.1 1119321 R 5874 CDS TA04960 3864694 complement(join(1122650..1123350,1123412..1123937)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.27 - score = 32.48; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA04960 by TMHMM2.0 at aa 7-26 and 384-406; Signal peptide predicted for TA04960 by SignalP 2.0 HMM (Signal peptide probability 0.704, signal anchor probability 0.182) with cleavage site probability 0.283 between residues 29 and 30; acid phosphatase, putative 1123937 3864694 TA04960 Theileria annulata acid phosphatase, putative XP_955207.1 1122650 R 5874 CDS TA04965 3864695 complement(join(1124142..1124542,1124728..1124930,1124970..1125024,1125056..1125205,1125259..1125397)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.26 - score = 21.31; 5 probable transmembrane helices predicted for TA04965 by TMHMM2.0 at aa 5-22, 79-96, 227-249, 254-276 and 286-305; (Zn) transporter protein, putative 1125397 3864695 TA04965 Theileria annulata (Zn) transporter protein, putative XP_955208.1 1124142 R 5874 CDS TA04980 3864698 complement(join(1125741..1126002,1126099..1126535,1126660..1126734,1126799..1126926,1126956..1127040)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.25 - score = 20.06; 50S ribosomal protein L3, putative 1127040 3864698 TA04980 Theileria annulata 50S ribosomal protein L3, putative XP_955209.1 1125741 R 5874 CDS TA04985 3864699 complement(join(1127296..1128009,1128038..1128142,1128204..1128383,1128534..1128755)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.24 - score = 35.44; RNA-binding protein, putative 1128755 3864699 TA04985 Theileria annulata RNA-binding protein, putative XP_955210.1 1127296 R 5874 CDS TA04990 3864700 complement(join(1129059..1129089,1129187..1129326,1129418..1129516,1129570..1129611,1129645..1129650)) 3 1 NC_011100.1 u6 snrna-associated sm-like protein lsm4, putative 1129650 3864700 TA04990 Theileria annulata u6 snrna-associated sm-like protein lsm4, putative XP_955211.1 1129059 R 5874 CDS TA04995 3864701 join(1129935..1130729,1130759..1131146,1131206..1131343,1131373..1131521,1131553..1131708,1131765..1131943,1132040..1132260,1132291..1132382,1132413..1132664) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.212 - score = 63.08; uncharacterized protein 1132664 3864701 TA04995 Theileria annulata uncharacterized protein XP_955212.1 1129935 D 5874 CDS TA05000 3864702 join(1132867..1133820,1133876..1134025) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.212 - score = 63.08; Signal peptide predicted for TA05000 by SignalP 2.0 HMM (Signal peptide probability 0.772, signal anchor probability 0.167) with cleavage site probability 0.526 between residues 22 and 23; uncharacterized protein 1134025 3864702 TA05000 Theileria annulata uncharacterized protein XP_955213.1 1132867 D 5874 CDS TA05005 3864703 1134054..1135700 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.213 - score = 28.01; uncharacterized protein 1135700 3864703 TA05005 Theileria annulata uncharacterized protein XP_955214.1 1134054 D 5874 CDS TA05010 3864704 join(1135737..1135975,1136005..1136072,1136104..1139345) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.214 - score = 52.27; 1 probable transmembrane helix predicted for TA05010 by TMHMM2.0 at aa 488-510; telomerase reverse transcriptase, putative 1139345 3864704 TA05010 Theileria annulata telomerase reverse transcriptase, putative XP_955215.1 1135737 D 5874 CDS TA05015 3864705 complement(1139515..1140090) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.22 - score = 14.39; Signal peptide predicted for TA05015 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.978 between residues 17 and 18; uncharacterized protein 1140090 3864705 TA05015 Theileria annulata uncharacterized protein XP_955216.1 1139515 R 5874 CDS TA05020 3864706 complement(join(1140342..1140520,1140552..1140747,1140777..1140872,1140904..1141071,1141102..1141378,1141437..1141948,1142131..1142274,1142315..1142401,1142465..1142590,1142639..1142746)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.21 - score = 50.90; uncharacterized protein 1142746 3864706 TA05020 Theileria annulata uncharacterized protein XP_955217.1 1140342 R 5874 CDS TA05025 3864707 complement(join(1142860..1143336,1143596..1144183)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.20 - score = 20.91; 2 probable transmembrane helices predicted for TA05025 by TMHMM2.0 at aa 133-155 and 193-215; Signal peptide predicted for TA05025 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.982 between residues 17 and 18; uncharacterized protein 1144183 3864707 TA05025 Theileria annulata uncharacterized protein XP_955218.1 1142860 R 5874 CDS TA05030 3864708 complement(join(1144470..1144871,1144939..1145064,1145106..1145287,1145320..1145397,1145474..1145641,1145672..1146083)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.19 - score = 31.93; uncharacterized protein 1146083 3864708 TA05030 Theileria annulata uncharacterized protein XP_955219.1 1144470 R 5874 CDS TA05035 3864709 complement(join(1146133..1146224,1146280..1146381,1146441..1146594)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.18 - score = 12.50; uncharacterized protein 1146594 3864709 TA05035 Theileria annulata uncharacterized protein XP_955220.1 1146133 R 5874 CDS TA05040 3864710 complement(join(1147308..1147445,1147479..1147586,1147636..1147797,1147834..1148005,1148034..1148299)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.17 - score = 22.47; uncharacterized protein 1148299 3864710 TA05040 Theileria annulata uncharacterized protein XP_955221.1 1147308 R 5874 CDS TA05045 3864711 complement(join(1148396..1148570,1148601..1149133,1149163..1149290,1149346..1149462,1149497..1149622,1149652..1149756,1149786..1149828,1149858..1150348,1150386..1150410)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.16 - score = 49.54; uncharacterized protein 1150410 3864711 TA05045 Theileria annulata uncharacterized protein XP_955222.1 1148396 R 5874 CDS TA05050 3864732 1150517..1151170 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.216 - score = 8.94; uncharacterized protein 1151170 3864732 TA05050 Theileria annulata uncharacterized protein XP_955223.1 1150517 D 5874 CDS TA05055 3864733 1152302..1154557 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.217 - score = 55.97; uncharacterized protein 1154557 3864733 TA05055 Theileria annulata uncharacterized protein XP_955224.1 1152302 D 5874 CDS TA05060 3864734 complement(1155539..1158214) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.15 - score = 60.19; ribonucleoside-diphosphate reductase large chain, putative 1158214 3864734 TA05060 Theileria annulata ribonucleoside-diphosphate reductase large chain, putative XP_955225.1 1155539 R 5874 CDS TA05065 3864735 complement(join(1159315..1159576,1159608..1159684,1159714..1159815,1159902..1160319,1160353..1160523,1160575..1161086)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.14 - score = 34.60; uncharacterized protein 1161086 3864735 TA05065 Theileria annulata uncharacterized protein XP_955226.1 1159315 R 5874 CDS TA05070 3864736 complement(join(1161103..1161153,1161182..1161433,1161469..1161508,1161538..1161624,1161680..1161747,1161894..1162181)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.13 - score = 20.38; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA05070 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.001) with cleavage site probability 0.735 between residues 23 and 24; ATP-dependent Clp protease proteolytic subunit, putative 1162181 3864736 TA05070 Theileria annulata ATP-dependent Clp protease proteolytic subunit, putative XP_955227.1 1161103 R 5874 CDS TA05075 3864737 complement(join(1162342..1162432,1162525..1162649,1162710..1162823,1162896..1163084)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.12 - score = 9.99; bis(5'-nucleosyl)-phosphatase 1163084 3864737 TA05075 Theileria annulata bis(5'-nucleosyl)-phosphatase XP_955228.1 1162342 R 5874 CDS TA05085 3864739 join(1163502..1164744,1164795..1165970,1166005..1166075,1166107..1166166,1166212..1166229,1166277..1166639) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.218 - score = 80.90; RNA helicase, putative 1166639 3864739 TA05085 Theileria annulata RNA helicase, putative XP_955229.1 1163502 D 5874 CDS TA05090 3864740 join(1167017..1167767,1167845..1168089,1168161..1168427,1168542..1168793,1168825..1168966,1169118..1169372,1169402..1169769) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.219 - score = 102.24; chromosome condensation (RCC1 homologue) protein, putative 1169769 3864740 TA05090 Theileria annulata chromosome condensation (RCC1 homologue) protein, putative XP_955230.1 1167017 D 5874 CDS TA05095 3864741 join(1169851..1169990,1170020..1170110,1170141..1170212,1170242..1170385,1170432..1170734,1170821..1171032,1171082..1171155,1171193..1171459,1171522..1172978) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.219 - score = 102.24; uncharacterized protein 1172978 3864741 TA05095 Theileria annulata uncharacterized protein XP_955231.1 1169851 D 5874 CDS TA05100 3864742 complement(1173085..1174137) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.11 - score = 19.33; 8 probable transmembrane helices predicted for TA05100 by TMHMM2.0 at aa 46-68, 78-100, 121-143, 165-184, 191-213, 228-250, 274-296 and 330-349; glucose-6-phosphate/phosphate translocator, putative 1174137 3864742 TA05100 Theileria annulata glucose-6-phosphate/phosphate translocator, putative XP_955232.1 1173085 R 5874 CDS TA05105 3864743 join(1175154..1175399,1175460..1175537,1175608..1175811,1175925..1176464,1176558..1176665) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.220 - score = 25.33; uncharacterized protein 1176665 3864743 TA05105 Theileria annulata uncharacterized protein XP_955233.1 1175154 D 5874 CDS TA05110 3864744 1176923..1180408 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.221 - score = 90.52; uncharacterized protein 1180408 3864744 TA05110 Theileria annulata uncharacterized protein XP_955234.1 1176923 D 5874 CDS TA05115 3864745 join(1180771..1180967,1181038..1182490) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.221 - score = 90.52; 1 probable transmembrane helix predicted for TA05115 by TMHMM2.0 at aa 497-519; NADH dehydrogenase, putative 1182490 3864745 TA05115 Theileria annulata NADH dehydrogenase, putative XP_955235.1 1180771 D 5874 CDS TA05120 3864746 complement(join(1182582..1182710,1182741..1182944,1183026..1183175)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.10 - score = 13.89; ubiquitin-conjugating enzyme (E2), putative 1183175 3864746 TA05120 Theileria annulata ubiquitin-conjugating enzyme (E2), putative XP_955236.1 1182582 R 5874 CDS TA05125 3864747 join(1183767..1183905,1183946..1184068,1184099..1184350,1184441..1185051,1185169..1185444,1185476..1185580) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.222 - score = 36.00; 11 probable transmembrane helices predicted for TA05125 by TMHMM2.0 at aa 33-55, 99-121, 125-144, 151-173, 183-205, 218-240, 300-322, 366-388, 392-414, 427-449 and 459-481; Signal anchor predicted for TA05125 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.740) with cleavage site probability 0.000 between residues -1 and 0; uncharacterized protein 1185580 3864747 TA05125 Theileria annulata uncharacterized protein XP_955237.1 1183767 D 5874 CDS TA05130 3864748 complement(join(1185654..1185915,1185947..1186134,1186163..1186258,1186290..1186364)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.9 - score = 16.57; uncharacterized protein 1186364 3864748 TA05130 Theileria annulata uncharacterized protein XP_955238.1 1185654 R 5874 CDS TA05145 3864555 join(1187193..1187295,1187332..1187454,1187484..1187735,1187869..1188425,1188497..1188772,1188814..1189155) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.223 - score = 38.75; 10 probable transmembrane helices predicted for TA05145 by TMHMM2.0 at aa 21-43, 84-106, 113-132, 142-164, 171-193, 203-225, 275-292, 332-354, 392-414 and 429-451; Signal anchor predicted for TA05145 by SignalP 2.0 HMM (Signal peptide probability 0.090, signal anchor probability 0.871) with cleavage site probability 0.027 between residues 42 and 43; uncharacterized protein 1189155 3864555 TA05145 Theileria annulata uncharacterized protein XP_955239.1 1187193 D 5874 CDS TA05150 3864556 join(1189692..1189839,1189871..1190122,1190178..1190863,1190895..1191179) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.224 - score = 21.90; 7 probable transmembrane helices predicted for TA05150 by TMHMM2.0 at aa 61-83, 98-120, 141-163, 178-200, 354-372, 382-401 and 408-430; uncharacterized protein 1191179 3864556 TA05150 Theileria annulata uncharacterized protein XP_955240.1 1189692 D 5874 CDS TA05155 3864557 join(1192467..1192489,1192522..1192673,1192788..1192907,1192940..1193191,1193254..1193861,1193983..1194249,1194281..1194379) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.225 - score = 27.34; 11 probable transmembrane helices predicted for TA05155 by TMHMM2.0 at aa 45-67, 132-154, 161-183, 193-215, 227-249, 312-334, 347-369, 379-398, 405-422, 432-454 and 466-488; uncharacterized protein 1194379 3864557 TA05155 Theileria annulata uncharacterized protein XP_955241.1 1192467 D 5874 CDS TA05160 3864558 join(1194660..1195922,1196049..1196423) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.226 - score = 24.89; 12 probable transmembrane helices predicted for TA05160 by TMHMM2.0 at aa 70-92, 136-158, 163-180, 190-212, 219-238, 253-275, 339-361, 384-406, 413-430, 435-457, 470-492 and 507-529; uncharacterized protein 1196423 3864558 TA05160 Theileria annulata uncharacterized protein XP_955242.1 1194660 D 5874 CDS TA05165 3864559 join(1196695..1196822,1196957..1197773) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.227 - score = 25.93; uncharacterized protein 1197773 3864559 TA05165 Theileria annulata uncharacterized protein XP_955243.1 1196695 D 5874 CDS TA05170 3864560 join(1198014..1198608,1198664..1198983,1199126..1199191,1199223..1199376,1199406..1199542) 3 1 NC_011100.1 note; 3 probable transmembrane helices predicted for TA05170 by TMHMM2.0 at aa 96-118, 362-384 and 394-416; uncharacterized protein 1199542 3864560 TA05170 Theileria annulata uncharacterized protein XP_955244.1 1198014 D 5874 CDS TA05175 3864561 join(1199655..1199779,1199816..1199919,1199952..1199993,1200028..1200364,1200456..1200617,1200647..1200750,1200784..1200992,1201088..1201192,1201244..1201683,1201736..1202009,1202054..1202255,1202390..1202577,1202656..1202841,1202872..1202979,1203015..1203128) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.229 - score = 70.31; 1 probable transmembrane helix predicted for TA05175 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA05175 by SignalP 2.0 HMM (Signal peptide probability 0.663, signal anchor probability 0.000) with cleavage site probability 0.355 between residues 22 and 23; DNA ligase 1 (precursor), putative 1203128 3864561 TA05175 Theileria annulata DNA ligase 1 (precursor), putative XP_955245.1 1199655 D 5874 CDS TA05180 3864562 complement(join(1203426..1203797,1203827..1203961,1204040..1204115,1204148..1204680)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.8 - score = 36.16; uncharacterized protein 1204680 3864562 TA05180 Theileria annulata uncharacterized protein XP_955246.1 1203426 R 5874 CDS TA05185 3864563 complement(join(1204937..1205509,1205541..1205726)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.8 - score = 36.16; uncharacterized protein 1205726 3864563 TA05185 Theileria annulata uncharacterized protein XP_955247.1 1204937 R 5874 CDS TA05190 3864564 join(1206156..1207751,1207808..1209994,1210189..1210278,1210348..1210602) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.230 - score = 68.11; 2 probable transmembrane helices predicted for TA05190 by TMHMM2.0 at aa 287-309 and 541-563; uncharacterized protein 1210602 3864564 TA05190 Theileria annulata uncharacterized protein XP_955248.1 1206156 D 5874 CDS TA05200 3864566 complement(1210647..1211558) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.7 - score = 21.71; uncharacterized protein 1211558 3864566 TA05200 Theileria annulata uncharacterized protein XP_955249.1 1210647 R 5874 CDS TA05205 3864567 complement(join(1211728..1212051,1212151..1212206,1212239..1212302)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.6 - score = 10.99; uncharacterized protein 1212302 3864567 TA05205 Theileria annulata uncharacterized protein XP_955250.1 1211728 R 5874 CDS TA05210 3864568 complement(join(1212527..1213441,1213537..1216226,1216256..1216391)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.5 - score = 69.13; uncharacterized protein 1216391 3864568 TA05210 Theileria annulata uncharacterized protein XP_955251.1 1212527 R 5874 CDS TA05215 3864569 join(1216686..1216839,1216881..1217049,1217085..1217246,1217308..1217410,1217475..1217620,1217685..1217814,1217844..1217911,1218011..1218104,1218136..1218217,1218248..1218535,1218653..1219631,1219726..1219852,1219918..1220468,1220529..1220757,1220923..1221202,1221307..1221482,1221564..1221643,1221754..1222033) 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA05215 by TMHMM2.0 at aa 1323-1345; uncharacterized protein 1222033 3864569 TA05215 Theileria annulata uncharacterized protein XP_955252.1 1216686 D 5874 CDS TA05220 3864570 complement(join(1222049..1223240,1223322..1224045,1224155..1224667,1224766..1224973)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.4 - score = 48.18; glucose-6-phosphate-1-dehydrogenase, putative 1224973 3864570 TA05220 Theileria annulata glucose-6-phosphate-1-dehydrogenase, putative XP_955253.1 1222049 R 5874 CDS TA05225 3864571 complement(join(1226562..1226795,1226867..1227432,1227572..1227639,1227741..1227838)) 3 1 NC_011100.1 note; Tap-24g11.q1c.C.cand.3 - score = 19.45; uncharacterized protein 1227838 3864571 TA05225 Theileria annulata uncharacterized protein XP_955254.1 1226562 R 5874 CDS TA05230 3864572 join(1228184..1228535,1228688..1229247,1229355..1229445,1229555..1229739,1229921..1230067,1230142..1230570,1230672..1230932,1231220..1231254,1231482..1231666,1231851..1233454) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.233 - score = 40.21; 8 probable transmembrane helices predicted for TA05230 by TMHMM2.0 at aa 685-707, 1031-1053, 1068-1085, 1105-1124, 1134-1156, 1161-1183, 1208-1230 and 1243-1265; cleavage and polyadenylation specificty factor, subunit, putative 1233454 3864572 TA05230 Theileria annulata cleavage and polyadenylation specificty factor, subunit, putative XP_955255.1 1228184 D 5874 CDS TA05235 3864573 join(1234368..1234617,1234660..1235291) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.234 - score = 15.17; 5 probable transmembrane helices predicted for TA05235 by TMHMM2.0 at aa 24-46, 117-139, 149-171, 214-236 and 270-292; GPI-Anchor Signal predicted for TA05235 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative 1235291 3864573 TA05235 Theileria annulata Tpr-related protein family member, putative XP_955256.1 1234368 D 5874 CDS TA05240 3864574 join(1235324..1235916,1235952..1236252) 3 1 NC_011100.1 note; Tap-24g11.q1c.cand.235 - score = 9.55; 4 probable transmembrane helices predicted for TA05240 by TMHMM2.0 at aa 45-67, 88-110, 120-142 and 203-225; Signal peptide predicted for TA05240 by SignalP 2.0 HMM (Signal peptide probability 0.782, signal anchor probability 0.024) with cleavage site probability 0.356 between residues 15 and 16; Tpr-related protein family member, putative 1236252 3864574 TA05240 Theileria annulata Tpr-related protein family member, putative XP_955257.1 1235324 D 5874 CDS TA05245 3864870 join(1236264..1236391,1236465..1236873) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA05245 by TMHMM2.0 at aa 26-45 and 55-77; GPI-Anchor Signal predicted for TA05245 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative 1236873 3864870 TA05245 Theileria annulata Tpr-related protein family member, putative XP_955258.1 1236264 D 5874 CDS TA05250 3864871 join(1236984..1237175,1237214..1238161,1238206..1239553,1239651..1240066) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA05250 by TMHMM2.0 at aa 327-346 and 359-378; uncharacterized protein 1240066 3864871 TA05250 Theileria annulata uncharacterized protein XP_955259.1 1236984 D 5874 CDS TA05255 3864872 1240292..1240738 3 1 NC_011100.1 3 probable transmembrane helices predicted for TA05255 by TMHMM2.0 at aa 20-42, 88-110 and 125-147; Signal peptide predicted for TA05255 by SignalP 2.0 HMM (Signal peptide probability 0.663, signal anchor probability 0.033) with cleavage site probability 0.361 between residues 30 and 31; GPI-Anchor Signal predicted for TA05255 by DGPI v2.04, no cleavage site predicted; Tpr-related protein family member, putative 1240738 3864872 TA05255 Theileria annulata Tpr-related protein family member, putative XP_955260.1 1240292 D 5874 CDS TA17570 3864586 1240751..1242931 3 1 NC_011100.1 uncharacterized protein 1242931 3864586 TA17570 Theileria annulata uncharacterized protein XP_955261.1 1240751 D 5874 CDS TA17575 3864587 1244176..1244709 3 1 NC_011100.1 Signal peptide predicted for TA17575 by SignalP 2.0 HMM (Signal peptide probability 0.996, signal anchor probability 0.001) with cleavage site probability 0.492 between residues 17 and 18; GPI-Anchor Signal predicted for TA17575 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1244709 3864587 TA17575 Theileria annulata uncharacterized protein XP_955262.1 1244176 D 5874 CDS TA17580 3864588 1245008..1245337 3 1 NC_011100.1 SfiI-subtelomeric fragment related protein family member, putative 1245337 3864588 TA17580 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955263.1 1245008 D 5874 CDS TA17585 3864589 complement(1246625..1248340) 3 1 NC_011100.1 9 probable transmembrane helices predicted for TA17585 by TMHMM2.0 at aa 20-39, 112-134, 144-166, 206-228, 340-362, 375-397, 420-442, 462-484 and 489-508; Signal anchor predicted for TA17585 by SignalP 2.0 HMM (Signal peptide probability 0.010, signal anchor probability 0.618) with cleavage site probability 0.002 between residues 41 and 42; Theileria-specific sub-telomeric protein, putative 1248340 3864589 TA17585 Theileria annulata Theileria-specific sub-telomeric protein, putative XP_955264.1 1246625 R 5874 CDS TA17590 3864590 join(1250494..1252024,1252169..1253071,1253168..1253305,1253337..1253744,1253835..1254022,1254052..1254285,1254362..1255756) 3 1 NC_011100.1 Contains ankyrin repeat elements and significant hit (6.5e-46)to Pfam:hitone deacetylase domain; histone deacetylase family protein, putative 1255756 3864590 TA17590 Theileria annulata histone deacetylase family protein, putative XP_955265.1 1250494 D 5874 CDS TA17595 3864591 1256488..1256709 3 1 NC_011100.1 SfiI-subtelomeric fragment related protein family member, putative 1256709 3864591 TA17595 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955266.1 1256488 D 5874 CDS TA17600 3864592 join(1257518..1258237,1258258..1258713) 3 1 NC_011100.1 Signal peptide predicted for TA17600 by SignalP 2.0 HMM (Signal peptide probability 0.892, signal anchor probability 0.002) with cleavage site probability 0.832 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 1258713 3864592 TA17600 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955267.1 1257518 D 5874 CDS TA17605 3864593 1258804..1259328 3 1 NC_011100.1 SfiI-subtelomeric fragment related protein family member, putative 1259328 3864593 TA17605 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955268.1 1258804 D 5874 CDS TA17610 3864594 1260271..1260498 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA17610 by TMHMM2.0 at aa 29-51; Signal anchor predicted for TA17610 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.834) with cleavage site probability 0.000 between residues 52 and 53; uncharacterized protein 1260498 3864594 TA17610 Theileria annulata uncharacterized protein XP_955269.1 1260271 D 5874 CDS TA17615 3865343 1260704..1261402 3 1 NC_011100.1 Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA17615 by TMHMM2.0 at aa 188-210; uncharacterized protein 1261402 3865343 TA17615 Theileria annulata uncharacterized protein XP_955270.1 1260704 D 5874 CDS TA17720 3865168 complement(join(1261616..1261843,1261899..1262053,1262200..1262317)) 3 1 NC_011100.1 centrin, putative 1262317 3865168 TA17720 Theileria annulata centrin, putative XP_955271.1 1261616 R 5874 CDS TA17775 3865179 complement(1262407..1262646) 3 1 NC_011100.1 uncharacterized protein 1262646 3865179 TA17775 Theileria annulata uncharacterized protein XP_955272.1 1262407 R 5874 CDS TA17780 3865180 join(1263595..1263705,1263817..1264300,1264352..1267149) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA17780 by TMHMM2.0 at aa 678-700 and 927-949; uncharacterized protein 1267149 3865180 TA17780 Theileria annulata uncharacterized protein XP_955273.1 1263595 D 5874 CDS TA17885 3864995 complement(join(1267623..1267820,1267871..1269469,1269510..1269739,1269872..1270094)) 3 1 NC_011100.1 Signal peptide predicted for TA17885 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.810 between residues 16 and 17; uncharacterized protein 1270094 3864995 TA17885 Theileria annulata uncharacterized protein XP_955274.1 1267623 R 5874 CDS TA17940 3864914 complement(join(1270411..1270572,1270634..1270912)) 3 1 NC_011100.1 uncharacterized protein 1270912 3864914 TA17940 Theileria annulata uncharacterized protein XP_955275.1 1270411 R 5874 CDS TA17945 3864915 join(1271088..1271256,1271316..1271433,1271508..1271673) 3 1 NC_011100.1 Signal anchor predicted for TA17945 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.656) with cleavage site probability 0.001 between residues 21 and 22; 60S ribosomal protein l28, putative 1271673 3864915 TA17945 Theileria annulata 60S ribosomal protein l28, putative XP_955276.1 1271088 D 5874 CDS TA18050 3864641 complement(join(1271723..1271993,1272115..1272197)) 3 1 NC_011100.1 60S ribosomal protein l35a, putative 1272197 3864641 TA18050 Theileria annulata 60S ribosomal protein l35a, putative XP_955277.1 1271723 R 5874 CDS TA18055 3864642 join(1272928..1273182,1273328..1273966) 3 1 NC_011100.1 uncharacterized protein 1273966 3864642 TA18055 Theileria annulata uncharacterized protein XP_955278.1 1272928 D 5874 CDS TA18160 3864722 complement(join(1274014..1274209,1274254..1274632,1274695..1275094,1275198..1275248)) 3 1 NC_011100.1 mostly similar to cobalamin synthesis protein from several bacterial origin; cobalamin synthesis protein, putative 1275248 3864722 TA18160 Theileria annulata cobalamin synthesis protein, putative XP_955279.1 1274014 R 5874 CDS TA18215 3865041 complement(join(1275442..1275589,1275666..1275910)) 3 1 NC_011100.1 uncharacterized protein 1275910 3865041 TA18215 Theileria annulata uncharacterized protein XP_955280.1 1275442 R 5874 CDS TA18270 3865052 complement(join(1276155..1276314,1276346..1276420,1276489..1276632,1276697..1276916,1277083..1277128,1277191..1277700,1277769..1278006,1278103..1278180,1278212..1278297,1278340..1278491,1278554..1278824)) 3 1 NC_011100.1 uncharacterized protein 1278824 3865052 TA18270 Theileria annulata uncharacterized protein XP_955281.1 1276155 R 5874 CDS TA18275 3865053 join(1279552..1280026,1280110..1283574,1283651..1284240) 3 1 NC_011100.1 uncharacterized protein 1284240 3865053 TA18275 Theileria annulata uncharacterized protein XP_955282.1 1279552 D 5874 CDS TA18380 3865155 complement(1284393..1284959) 3 1 NC_011100.1 uncharacterized protein 1284959 3865155 TA18380 Theileria annulata uncharacterized protein XP_955283.1 1284393 R 5874 CDS TA18385 3865156 1285214..1286110 3 1 NC_011100.1 uncharacterized protein 1286110 3865156 TA18385 Theileria annulata uncharacterized protein XP_955284.1 1285214 D 5874 CDS TA18480 3864769 complement(join(1286180..1286750,1286781..1286874,1286930..1287110,1287197..1287345,1287377..1287659)) 3 1 NC_011100.1 8 probable transmembrane helices predicted for TA18480 by TMHMM2.0 at aa 89-111, 173-192, 199-216, 246-268, 281-303, 346-363, 376-398 and 402-424; cox15 homolog, putative 1287659 3864769 TA18480 Theileria annulata cox15 homolog, putative XP_955285.1 1286180 R 5874 CDS TA18485 3864770 join(1287720..1287990,1288086..1288244,1288309..1288473,1288539..1288826,1288892..1289097,1289157..1289369) 3 1 NC_011100.1 methionine aminopeptidase, putative 1289369 3864770 TA18485 Theileria annulata methionine aminopeptidase, putative XP_955286.1 1287720 D 5874 CDS TA18490 3864771 join(1290110..1290350,1290397..1290456,1290533..1290939) 3 1 NC_011100.1 Pfam match to MAM33 family protein; mitochondrial matrix family protein, putative 1290939 3864771 TA18490 Theileria annulata mitochondrial matrix family protein, putative XP_955287.1 1290110 D 5874 CDS TA18495 3865059 join(1291163..1291761,1291801..1294388,1294420..1294524,1294556..1296535,1296618..1302377,1302502..1302859,1302919..1303270) 3 1 NC_011100.1 Significant similarities to midasin-related proteins; uncharacterized protein 1303270 3865059 TA18495 Theileria annulata uncharacterized protein XP_955288.1 1291163 D 5874 CDS TA18500 3865060 join(1303918..1303993,1304026..1304360) 3 1 NC_011100.1 Signal peptide predicted for TA18500 by SignalP 2.0 HMM (Signal peptide probability 0.992, signal anchor probability 0.000) with cleavage site probability 0.324 between residues 15 and 16; uncharacterized protein 1304360 3865060 TA18500 Theileria annulata uncharacterized protein XP_955289.1 1303918 D 5874 CDS TA18505 3865061 join(1304598..1304694,1304773..1305098) 3 1 NC_011100.1 Signal peptide predicted for TA18505 by SignalP 2.0 HMM (Signal peptide probability 0.802, signal anchor probability 0.000) with cleavage site probability 0.551 between residues 21 and 22; uncharacterized protein 1305098 3865061 TA18505 Theileria annulata uncharacterized protein XP_955290.1 1304598 D 5874 CDS TA18510 3865062 1305303..1305566 3 1 NC_011100.1 uncharacterized protein 1305566 3865062 TA18510 Theileria annulata uncharacterized protein XP_955291.1 1305303 D 5874 CDS TA18515 3865063 complement(join(1305858..1306085,1306118..1306282,1306313..1306413,1306459..1306516,1306579..1306761,1306818..1307051,1307084..1307221,1307253..1307422,1307496..1307558,1307588..1307660,1307693..1307902)) 3 1 NC_011100.1 Contains putative TPR repeats; significant similarities to stress-induced phosproteins from several organisms; uncharacterized protein 1307902 3865063 TA18515 Theileria annulata uncharacterized protein XP_955292.1 1305858 R 5874 CDS TA18520 3865064 complement(1308078..1309286) 3 1 NC_011100.1 queuine trna-ribosyltransferase-related protein, putative 1309286 3865064 TA18520 Theileria annulata queuine trna-ribosyltransferase-related protein, putative XP_955293.1 1308078 R 5874 CDS TA18525 3865065 complement(join(1309495..1309581,1309612..1309731,1309762..1309862,1309893..1310160)) 3 1 NC_011100.1 uncharacterized protein 1310160 3865065 TA18525 Theileria annulata uncharacterized protein XP_955294.1 1309495 R 5874 CDS TA18530 3865066 join(1310439..1310522,1310566..1311072,1311103..1311609,1311744..1311991,1312020..1312090,1312164..1312228) 3 1 NC_011100.1 uncharacterized protein 1312228 3865066 TA18530 Theileria annulata uncharacterized protein XP_955295.1 1310439 D 5874 CDS TA18535 3865067 1312476..1313426 3 1 NC_011100.1 Signal peptide predicted for TA18535 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.983 between residues 21 and 22; uncharacterized protein 1313426 3865067 TA18535 Theileria annulata uncharacterized protein XP_955296.1 1312476 D 5874 CDS TA18540 3865068 1313640..1314569 3 1 NC_011100.1 Signal peptide predicted for TA18540 by SignalP 2.0 HMM (Signal peptide probability 0.763, signal anchor probability 0.004) with cleavage site probability 0.672 between residues 18 and 19; uncharacterized protein 1314569 3865068 TA18540 Theileria annulata uncharacterized protein XP_955297.1 1313640 D 5874 CDS TA18545 3865069 1315165..1316538 3 1 NC_011100.1 11 probable transmembrane helices predicted for TA18545 by TMHMM2.0 at aa 15-37, 57-79, 89-111, 118-140, 150-172, 184-206, 236-258, 271-293, 308-330, 343-365 and 380-402; Signal peptide predicted for TA18545 by SignalP 2.0 HMM (Signal peptide probability 0.646, signal anchor probability 0.129) with cleavage site probability 0.400 between residues 35 and 36; integral membrane protein, putative 1316538 3865069 TA18545 Theileria annulata integral membrane protein, putative XP_955298.1 1315165 D 5874 CDS TA18550 3865070 complement(join(1316740..1316856,1316909..1317023,1317053..1317119,1317151..1317198,1317230..1317296,1317410..1317804,1317931..1318062,1318203..1318719)) 3 1 NC_011100.1 uncharacterized protein 1318719 3865070 TA18550 Theileria annulata uncharacterized protein XP_955299.1 1316740 R 5874 CDS TA18555 3865071 join(1319648..1319700,1319741..1319859,1319984..1320007,1320038..1320210,1320317..1320554,1320730..1320971,1321112..1321284,1321310..1321375,1321443..1321464,1321517..1321681) 3 1 NC_011100.1 GTP-binding protein, putative 1321681 3865071 TA18555 Theileria annulata GTP-binding protein, putative XP_955300.1 1319648 D 5874 CDS TA18560 3865072 complement(join(1321897..1322489,1322532..1322586)) 3 1 NC_011100.1 note; uncharacterized protein 1322586 3865072 TA18560 Theileria annulata uncharacterized protein XP_955301.1 1321897 R 5874 CDS TA18565 3865073 join(1322874..1322933,1322974..1323168,1323284..1323438,1323685..1323906,1323937..1324087,1324357..1324599,1324750..1324890,1325031..1325225,1325352..1325537) 3 1 NC_011100.1 uncharacterized protein 1325537 3865073 TA18565 Theileria annulata uncharacterized protein XP_955302.1 1322874 D 5874 CDS TA18570 3865074 join(1325797..1325844,1325916..1326246,1326305..1326504,1326537..1326641) 3 1 NC_011100.1 uncharacterized protein 1326641 3865074 TA18570 Theileria annulata uncharacterized protein XP_955303.1 1325797 D 5874 CDS TA18575 3865075 1328334..1328723 3 1 NC_011100.1 uncharacterized protein 1328723 3865075 TA18575 Theileria annulata uncharacterized protein XP_955304.1 1328334 D 5874 CDS TA18580 3865076 join(1329098..1329268,1329369..1329522,1329658..1329745,1329881..1330034,1330119..1330349) 3 1 NC_011100.1 uncharacterized protein 1330349 3865076 TA18580 Theileria annulata uncharacterized protein XP_955305.1 1329098 D 5874 CDS TA18585 3865077 1330528..1331979 3 1 NC_011100.1 uncharacterized protein 1331979 3865077 TA18585 Theileria annulata uncharacterized protein XP_955306.1 1330528 D 5874 CDS TA18590 3865078 join(1332236..1332617,1332668..1332823,1332853..1332908) 3 1 NC_011100.1 uncharacterized protein 1332908 3865078 TA18590 Theileria annulata uncharacterized protein XP_955307.1 1332236 D 5874 CDS TA18595 3865247 join(1332944..1333252,1333281..1333339,1333370..1333587,1333618..1333739) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA18595 by TMHMM2.0 at aa 90-112 and 211-233; uncharacterized protein 1333739 3865247 TA18595 Theileria annulata uncharacterized protein XP_955308.1 1332944 D 5874 CDS TA18600 3865248 complement(1333940..1334428) 3 1 NC_011100.1 Contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA18600 by TMHMM2.0 at aa 80-102; uncharacterized protein 1334428 3865248 TA18600 Theileria annulata uncharacterized protein XP_955309.1 1333940 R 5874 CDS TA18605 3865249 complement(join(1334793..1335212,1335359..1335419,1335547..1335636,1335727..1335874,1335956..1336709)) 3 1 NC_011100.1 Contains 8 putative transmembrane domain; 8 probable transmembrane helices predicted for TA18605 by TMHMM2.0 at aa 17-35, 50-69, 90-112, 156-178, 223-242, 247-266, 379-401 and 406-428; uncharacterized protein 1336709 3865249 TA18605 Theileria annulata uncharacterized protein XP_955310.1 1334793 R 5874 CDS TA18610 3865250 1337446..1337733 3 1 NC_011100.1 Contains significant homology to CSP SMART domain; cold shock protein, putative 1337733 3865250 TA18610 Theileria annulata cold shock protein, putative XP_955311.1 1337446 D 5874 CDS TA18615 3865251 join(1337974..1338141,1338302..1338474,1338634..1339142,1339403..1339540,1339688..1339879,1340044..1340501) 3 1 NC_011100.1 ATP synthase alpha chain heart isoform, mitochondrial precursor, putative 1340501 3865251 TA18615 Theileria annulata ATP synthase alpha chain heart isoform, mitochondrial precursor, putative XP_955312.1 1337974 D 5874 CDS TA18620 3865252 complement(join(1341360..1341583,1341737..1343348)) 3 1 NC_011100.1 Significant Pfam match to sec1 family domain; Sec1 family protein, putative 1343348 3865252 TA18620 Theileria annulata Sec1 family protein, putative XP_955313.1 1341360 R 5874 CDS TA18625 3865253 complement(join(1343994..1344161,1344205..1344758,1344917..1345058)) 3 1 NC_011100.1 Contains a putative signal sequence; 1 probable transmembrane helix predicted for TA18625 by TMHMM2.0 at aa 34-56; Signal anchor predicted for TA18625 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.992) with cleavage site probability 0.001 between residues 47 and 48; uncharacterized protein 1345058 3865253 TA18625 Theileria annulata uncharacterized protein XP_955314.1 1343994 R 5874 CDS TA18630 3865254 complement(join(1345252..1345590,1345714..1345813,1345844..1345926,1346115..1346210,1346377..1346505,1346561..1346794,1346951..1347087,1347119..1347364,1347498..1348271,1348308..1349055)) 3 1 NC_011100.1 replication factor c-related protein, putative 1349055 3865254 TA18630 Theileria annulata replication factor c-related protein, putative XP_955315.1 1345252 R 5874 CDS TA18635 3865255 complement(join(1349402..1349676,1349746..1349772,1349947..1350090,1350277..1350325)) 3 1 NC_011100.1 4 probable transmembrane helices predicted for TA18635 by TMHMM2.0 at aa 4-26, 82-104, 109-126 and 146-163; GPI-Anchor Signal predicted for TA18635 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1350325 3865255 TA18635 Theileria annulata uncharacterized protein XP_955316.1 1349402 R 5874 CDS TA18640 3865256 join(1350742..1350765,1350887..1351056,1351089..1351674) 3 1 NC_011100.1 uncharacterized protein 1351674 3865256 TA18640 Theileria annulata uncharacterized protein XP_955317.1 1350742 D 5874 CDS TA18645 3865257 join(1352323..1352871,1352907..1353947) 3 1 NC_011100.1 Contains putative transmembrane domains; 2 probable transmembrane helices predicted for TA18645 by TMHMM2.0 at aa 131-153 and 160-182; uncharacterized protein 1353947 3865257 TA18645 Theileria annulata uncharacterized protein XP_955318.1 1352323 D 5874 CDS TA18650 3865258 complement(join(1354205..1354851,1354945..1355615,1355744..1355760)) 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA18650 by TMHMM2.0 at aa 279-301; uncharacterized protein 1355760 3865258 TA18650 Theileria annulata uncharacterized protein XP_955319.1 1354205 R 5874 CDS TA18655 3865259 complement(1356447..1358177) 3 1 NC_011100.1 Contains 10 putative transmembrane domains; 10 probable transmembrane helices predicted for TA18655 by TMHMM2.0 at aa 20-42, 119-141, 151-173, 213-235, 264-286, 299-318, 387-409, 429-451, 461-483 and 550-572; Theileria-specific integral membrane protein, putative 1358177 3865259 TA18655 Theileria annulata Theileria-specific integral membrane protein, putative XP_955320.1 1356447 R 5874 CDS TA18660 3865260 complement(join(1359467..1359697,1359747..1359843,1359901..1360238,1360389..1360456,1360490..1360587,1360635..1360822)) 3 1 NC_011100.1 Contains putative WD04 domains; uncharacterized protein 1360822 3865260 TA18660 Theileria annulata uncharacterized protein XP_955321.1 1359467 R 5874 CDS TA18665 3865261 join(1360987..1361074,1361223..1361312,1361483..1361567,1361603..1361715,1361771..1361879,1361899..1361989,1362032..1362181) 3 1 NC_011100.1 The N-terminal part is conserved with a few mammlian proteins; contains a putative transmembrane domain; 1 probable transmembrane helix predicted for TA18665 by TMHMM2.0 at aa 102-124; uncharacterized protein 1362181 3865261 TA18665 Theileria annulata uncharacterized protein XP_955322.1 1360987 D 5874 CDS TA18670 3865262 1362817..1363206 3 1 NC_011100.1 Conatins one putative transmembrane domain; 1 probable transmembrane helix predicted for TA18670 by TMHMM2.0 at aa 22-44; uncharacterized protein 1363206 3865262 TA18670 Theileria annulata uncharacterized protein XP_955323.1 1362817 D 5874 CDS TA18675 3865263 complement(1363498..1365291) 3 1 NC_011100.1 Contains 10 putative transmembrane domains; 11 probable transmembrane helices predicted for TA18675 by TMHMM2.0 at aa 22-44, 121-143, 153-175, 215-237, 267-289, 302-321, 387-409, 429-451, 461-478, 536-555 and 559-578; Theileria-specific integral membrane protein, putative 1365291 3865263 TA18675 Theileria annulata Theileria-specific integral membrane protein, putative XP_955324.1 1363498 R 5874 CDS TA18680 3865264 complement(1366740..1367387) 3 1 NC_011100.1 note; uncharacterized protein 1367387 3865264 TA18680 Theileria annulata uncharacterized protein XP_955325.1 1366740 R 5874 CDS TA18685 3865265 join(1367538..1367647,1367734..1368421) 3 1 NC_011100.1 hypothetical protein, conserved; uncharacterized protein 1368421 3865265 TA18685 Theileria annulata uncharacterized protein XP_955326.1 1367538 D 5874 CDS TA18690 3864810 complement(join(1368708..1368850,1369026..1369383,1369419..1369437,1369491..1370382,1370433..1370609,1370674..1371506,1371608..1373050,1373234..1373412)) 3 1 NC_011100.1 uncharacterized protein 1373412 3864810 TA18690 Theileria annulata uncharacterized protein XP_955327.1 1368708 R 5874 CDS TA18695 3864811 join(1373712..1373720,1373801..1373906,1373993..1374108) 3 1 NC_011100.1 ubiquitin-like protein, putative 1374108 3864811 TA18695 Theileria annulata ubiquitin-like protein, putative XP_955328.1 1373712 D 5874 CDS TA18700 3864812 1374749..1375636 3 1 NC_011100.1 Significant hit to Pfam New1 domain; 4 probable transmembrane helices predicted for TA18700 by TMHMM2.0 at aa 17-39, 49-71, 158-180 and 200-222; Signal anchor predicted for TA18700 by SignalP 2.0 HMM (Signal peptide probability 0.062, signal anchor probability 0.937) with cleavage site probability 0.046 between residues 34 and 35; NEW1 domain containing protein isoform, putative 1375636 3864812 TA18700 Theileria annulata NEW1 domain containing protein isoform, putative XP_955329.1 1374749 D 5874 CDS TA18705 3864813 complement(1375718..1376704) 3 1 NC_011100.1 Contains a putative signal sequence; uncharacterized protein 1376704 3864813 TA18705 Theileria annulata uncharacterized protein XP_955330.1 1375718 R 5874 CDS TA18710 3864814 join(1377177..1377233,1377299..1377583) 3 1 NC_011100.1 Significant hit to Pfam DnaJ domain; DnaJ protein, putative 1377583 3864814 TA18710 Theileria annulata DnaJ protein, putative XP_955331.1 1377177 D 5874 CDS TA18715 3864815 1377731..1379635 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA18715 by TMHMM2.0 at aa 175-197 and 326-348; uncharacterized protein 1379635 3864815 TA18715 Theileria annulata uncharacterized protein XP_955332.1 1377731 D 5874 CDS TA18720 3864816 complement(join(1379876..1380116,1380147..1380220,1380286..1380447,1380539..1380705,1380738..1380816,1380862..1380926,1381013..1381373)) 3 1 NC_011100.1 uncharacterized protein 1381373 3864816 TA18720 Theileria annulata uncharacterized protein XP_955333.1 1379876 R 5874 CDS TA18725 3864817 join(1381576..1381614,1381655..1381816,1381892..1382071,1382146..1382331,1382408..1382563) 3 1 NC_011100.1 ribose 5-phosphate epimerase, putative 1382563 3864817 TA18725 Theileria annulata ribose 5-phosphate epimerase, putative XP_955334.1 1381576 D 5874 CDS TA18730 3864818 join(1382717..1382969,1383116..1383486) 3 1 NC_011100.1 uncharacterized protein 1383486 3864818 TA18730 Theileria annulata uncharacterized protein XP_955335.1 1382717 D 5874 CDS TA18735 3864819 1383816..1386185 3 1 NC_011100.1 uncharacterized protein 1386185 3864819 TA18735 Theileria annulata uncharacterized protein XP_955336.1 1383816 D 5874 CDS TA18740 3864820 complement(join(1386371..1386421,1386504..1386587,1386621..1386665,1386695..1386741,1386821..1386887,1386927..1386999,1387037..1387092,1387175..1387219,1387260..1387345,1387424..1387472)) 3 1 NC_011100.1 calcyclin binding protein-like, putative 1387472 3864820 TA18740 Theileria annulata calcyclin binding protein-like, putative XP_955337.1 1386371 R 5874 CDS TA18745 3864821 complement(join(1387532..1387781,1387826..1388241)) 3 1 NC_011100.1 Signal peptide predicted for TA18745 by SignalP 2.0 HMM (Signal peptide probability 0.833, signal anchor probability 0.000) with cleavage site probability 0.337 between residues 19 and 20; nicotinate-nucleotide adenylyltransferase-like protein, putative 1388241 3864821 TA18745 Theileria annulata nicotinate-nucleotide adenylyltransferase-like protein, putative XP_955338.1 1387532 R 5874 CDS TA18750 3864822 complement(1389168..1389590) 3 1 NC_011100.1 Contains a putative signal peptide; 1 probable transmembrane helix predicted for TA18750 by TMHMM2.0 at aa 5-24; Signal peptide predicted for TA18750 by SignalP 2.0 HMM (Signal peptide probability 0.650, signal anchor probability 0.000) with cleavage site probability 0.469 between residues 19 and 20; Theileria-specific hypothetical protein, putative 1389590 3864822 TA18750 Theileria annulata Theileria-specific hypothetical protein, putative XP_955339.1 1389168 R 5874 CDS TA18755 3864823 complement(1389799..1390749) 3 1 NC_011100.1 Contains a putative signal sequence; Signal peptide predicted for TA18755 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.003) with cleavage site probability 0.424 between residues 20 and 21; Theileria-specific conserved protein, putative 1390749 3864823 TA18755 Theileria annulata Theileria-specific conserved protein, putative XP_955340.1 1389799 R 5874 CDS TA18760 3864824 complement(1390957..1391700) 3 1 NC_011100.1 Contains a putative signal sequence; Signal peptide predicted for TA18760 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.003) with cleavage site probability 0.423 between residues 20 and 21; Theileria-specific conserved protein, putative 1391700 3864824 TA18760 Theileria annulata Theileria-specific conserved protein, putative XP_955341.1 1390957 R 5874 CDS TA18765 3864825 complement(1391881..1392618) 3 1 NC_011100.1 Contains a putative signal sequence; Signal peptide predicted for TA18765 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.789 between residues 15 and 16; Theileria-specific conserved protein, putative 1392618 3864825 TA18765 Theileria annulata Theileria-specific conserved protein, putative XP_955342.1 1391881 R 5874 CDS TA18770 3864826 complement(1392969..1393859) 3 1 NC_011100.1 Contains a putative signal sequence; Signal peptide predicted for TA18770 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.400 between residues 16 and 17; Theileria-specific conserved protein, putative 1393859 3864826 TA18770 Theileria annulata Theileria-specific conserved protein, putative XP_955343.1 1392969 R 5874 CDS TA18775 3864827 join(1394594..1394640,1394678..1394744,1394821..1394938,1395017..1395104,1395135..1395367,1395406..1395572,1395640..1395786,1395851..1396299,1396345..1396540,1396619..1396738) 3 1 NC_011100.1 uncharacterized protein 1396738 3864827 TA18775 Theileria annulata uncharacterized protein XP_955344.1 1394594 D 5874 CDS TA18780 3864828 complement(join(1396777..1396997,1397029..1397103,1397134..1397737)) 3 1 NC_011100.1 uncharacterized protein 1397737 3864828 TA18780 Theileria annulata uncharacterized protein XP_955345.1 1396777 R 5874 CDS TA18785 3864829 1398044..1398790 3 1 NC_011100.1 uncharacterized protein 1398790 3864829 TA18785 Theileria annulata uncharacterized protein XP_955346.1 1398044 D 5874 CDS TA18790 3864948 complement(join(1399354..1399528,1399680..1399715,1399796..1400051,1400131..1400328,1400360..1400603,1400628..1400770,1400863..1401856,1401867..1402072,1402151..1402209,1402251..1402369,1402404..1402463)) 3 1 NC_011100.1 Significant Pfam & SMART hit to DEXDc2 & HELICc2 domains; chl1 protein, putative 1402463 3864948 TA18790 Theileria annulata chl1 protein, putative XP_955347.1 1399354 R 5874 CDS TA18795 3864949 join(1402909..1403000,1403057..1403403,1403434..1403828,1403860..1403927,1403979..1404294,1404387..1404488,1404521..1404787,1404885..1404957,1404987..1405317,1405363..1405489) 3 1 NC_011100.1 SAC3/GNAP family-related protein, putative 1405489 3864949 TA18795 Theileria annulata SAC3/GNAP family-related protein, putative XP_955348.1 1402909 D 5874 CDS TA18800 3864950 complement(1405833..1407839) 3 1 NC_011100.1 uncharacterized protein 1407839 3864950 TA18800 Theileria annulata uncharacterized protein XP_955349.1 1405833 R 5874 CDS TA18805 3864951 complement(1408365..1408619) 3 1 NC_011100.1 uncharacterized protein 1408619 3864951 TA18805 Theileria annulata uncharacterized protein XP_955350.1 1408365 R 5874 CDS TA18810 3864952 1408968..1412591 3 1 NC_011100.1 uncharacterized protein 1412591 3864952 TA18810 Theileria annulata uncharacterized protein XP_955351.1 1408968 D 5874 CDS TA18815 3864953 join(1412931..1412961,1413033..1413224,1413266..1413339) 3 1 NC_011100.1 Shows strong hit to SMART & Pfam rrm domain; RNA-binding protein, putative 1413339 3864953 TA18815 Theileria annulata RNA-binding protein, putative XP_955352.1 1412931 D 5874 CDS TA18820 3864954 join(1413911..1414561,1414623..1414979,1415057..1418915,1419038..1419357,1419449..1420027) 3 1 NC_011100.1 uncharacterized protein 1420027 3864954 TA18820 Theileria annulata uncharacterized protein XP_955353.1 1413911 D 5874 CDS TA18825 3864955 join(1420112..1420487,1420521..1421232,1421263..1421357,1421534..1421621,1421662..1421740) 3 1 NC_011100.1 uncharacterized protein 1421740 3864955 TA18825 Theileria annulata uncharacterized protein XP_955354.1 1420112 D 5874 CDS TA18830 3864956 join(1422200..1422613,1422646..1422741,1422774..1422861,1422893..1423020,1423089..1423274,1423335..1423421,1423453..1423596,1423649..1423820,1423851..1424016,1424062..1424302,1424344..1424613,1424646..1424738,1424805..1424994,1425078..1425173,1425247..1425447,1425510..1425618,1425692..1425831,1425893..1426034,1426070..1426205,1426235..1426300,1426357..1426553,1426643..1426690,1426719..1426878) 3 1 NC_011100.1 regulator of nonsense transcripts-related protein, putative 1426878 3864956 TA18830 Theileria annulata regulator of nonsense transcripts-related protein, putative XP_955355.1 1422200 D 5874 CDS TA18835 3864957 join(1427037..1427164,1427236..1427283,1427352..1427460,1427515..1427593,1427696..1427735,1427777..1428046,1428192..1428426) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA18835 by TMHMM2.0 at aa 10-29 and 42-64; Signal anchor predicted for TA18835 by SignalP 2.0 HMM (Signal peptide probability 0.034, signal anchor probability 0.954) with cleavage site probability 0.014 between residues 30 and 31; uncharacterized protein 1428426 3864957 TA18835 Theileria annulata uncharacterized protein XP_955356.1 1427037 D 5874 CDS TA18840 3864958 join(1428792..1428894,1428926..1428967,1428997..1429077,1429110..1429239,1429325..1429447,1429515..1429681,1429745..1429989) 3 1 NC_011100.1 6 probable transmembrane helices predicted for TA18840 by TMHMM2.0 at aa 79-101, 111-130, 151-173, 188-210, 222-244 and 248-270; synaptic glycoprotein sc2, putative 1429989 3864958 TA18840 Theileria annulata synaptic glycoprotein sc2, putative XP_955357.1 1428792 D 5874 CDS TA18845 3864959 complement(1430044..1432680) 3 1 NC_011100.1 uncharacterized protein 1432680 3864959 TA18845 Theileria annulata uncharacterized protein XP_955358.1 1430044 R 5874 CDS TA18850 3864960 complement(1432751..1433356) 3 1 NC_011100.1 uncharacterized protein 1433356 3864960 TA18850 Theileria annulata uncharacterized protein XP_955359.1 1432751 R 5874 CDS TA17620 3865344 1434127..1435683 3 1 NC_011100.1 uncharacterized protein 1435683 3865344 TA17620 Theileria annulata uncharacterized protein XP_955360.1 1434127 D 5874 CDS TA17625 3865345 complement(join(1435767..1436012,1436043..1436129,1436177..1436271,1436301..1436373,1436404..1436439,1436471..1436868,1436946..1437036,1437065..1437174,1437205..1437268,1437313..1437465,1437553..1437777,1437808..1437929,1438000..1438216,1438278..1438292,1438369..1438507,1438559..1438650,1438684..1438802,1438886..1438940)) 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA17625 by TMHMM2.0 at aa 195-214; cullin, putative 1438940 3865345 TA17625 Theileria annulata cullin, putative XP_955361.1 1435767 R 5874 CDS TA17630 3865346 join(1439464..1440139,1440183..1440287,1440321..1444099,1444143..1444282,1444369..1444498) 3 1 NC_011100.1 uncharacterized protein 1444498 3865346 TA17630 Theileria annulata uncharacterized protein XP_955362.1 1439464 D 5874 CDS TA17635 3865347 complement(1444509..1445321) 3 1 NC_011100.1 7 probable transmembrane helices predicted for TA17635 by TMHMM2.0 at aa 29-48, 53-72, 130-152, 156-173, 185-207, 217-236 and 243-262; Signal anchor predicted for TA17635 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.995) with cleavage site probability 0.000 between residues 51 and 52; rer1 family protein, putative 1445321 3865347 TA17635 Theileria annulata rer1 family protein, putative XP_955363.1 1444509 R 5874 CDS TA17640 3865348 complement(join(1445631..1445814,1445868..1446154,1446187..1446245,1446355..1446422,1446459..1446508)) 3 1 NC_011100.1 Ras-related gtpase, putative 1446508 3865348 TA17640 Theileria annulata Ras-related gtpase, putative XP_955364.1 1445631 R 5874 CDS TA17645 3865349 complement(join(1446771..1450656,1450684..1453158,1453189..1453313)) 3 1 NC_011100.1 dead/deah-like helicase, putative 1453313 3865349 TA17645 Theileria annulata dead/deah-like helicase, putative XP_955365.1 1446771 R 5874 CDS TA17650 3865350 join(1454472..1459820,1459861..1465561,1465592..1465673,1465740..1465872) 3 1 NC_011100.1 uncharacterized protein 1465872 3865350 TA17650 Theileria annulata uncharacterized protein XP_955366.1 1454472 D 5874 CDS TA17655 3865351 join(1466017..1466117,1466159..1466256,1466323..1466441) 3 1 NC_011100.1 Signal peptide predicted for TA17655 by SignalP 2.0 HMM (Signal peptide probability 0.763, signal anchor probability 0.000) with cleavage site probability 0.476 between residues 18 and 19; uncharacterized protein 1466441 3865351 TA17655 Theileria annulata uncharacterized protein XP_955367.1 1466017 D 5874 CDS TA17660 3865352 complement(join(1466561..1466713,1466743..1466836,1466869..1467004,1467035..1467099,1467129..1467287,1467322..1467434,1467508..1467591,1467655..1467789,1467819..1468048,1468077..1468197,1468228..1468313,1468377..1468454,1468485..1468574,1468608..1468700,1468740..1468926)) 3 1 NC_011100.1 Strong Pfam hits to pyr_redox (1.5e-14) and Rieske (3.4e-50) domains; ferrodoxin reductase-like protein, putative 1468926 3865352 TA17660 Theileria annulata ferrodoxin reductase-like protein, putative XP_955368.1 1466561 R 5874 CDS TA17665 3865353 join(1469098..1469112,1469163..1469226,1469261..1469337,1469372..1469508,1469539..1469787,1469818..1469932) 3 1 NC_011100.1 uncharacterized protein 1469932 3865353 TA17665 Theileria annulata uncharacterized protein XP_955369.1 1469098 D 5874 CDS TA17670 3865354 complement(join(1470045..1470589,1470618..1470840,1470887..1470972,1471096..1471198)) 3 1 NC_011100.1 Signal peptide predicted for TA17670 by SignalP 2.0 HMM (Signal peptide probability 0.965, signal anchor probability 0.000) with cleavage site probability 0.919 between residues 17 and 18; lytB protein, putative 1471198 3865354 TA17670 Theileria annulata lytB protein, putative XP_955370.1 1470045 R 5874 CDS TA17680 3865355 complement(join(1471212..1471989,1472017..1474910)) 3 1 NC_011100.1 Pfam match to UCH-1 and UCH-2 domains; ubiquitin carboxyl-terminal hydrolase, putative 1474910 3865355 TA17680 Theileria annulata ubiquitin carboxyl-terminal hydrolase, putative XP_955371.1 1471212 R 5874 CDS TA17685 3865356 join(1475894..1477035,1477067..1477120,1477154..1477281,1477311..1477360) 3 1 NC_011100.1 Pfam hit to asp domain (9.6e-07); aspartyl(acid) protease, putative 1477360 3865356 TA17685 Theileria annulata aspartyl(acid) protease, putative XP_955372.1 1475894 D 5874 CDS TA17690 3865357 complement(join(1477529..1479237,1479304..1479397)) 3 1 NC_011100.1 regulator of chromosome condensation protein, putative 1479397 3865357 TA17690 Theileria annulata regulator of chromosome condensation protein, putative XP_955373.1 1477529 R 5874 CDS TA17695 3865358 complement(1479952..1480584) 3 1 NC_011100.1 Contains a putative signal sequence; 1 probable transmembrane helix predicted for TA17695 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA17695 by SignalP 2.0 HMM (Signal peptide probability 0.045, signal anchor probability 0.955) with cleavage site probability 0.023 between residues 34 and 35; Theileria-specific hypothetical protein, putative 1480584 3865358 TA17695 Theileria annulata Theileria-specific hypothetical protein, putative XP_955374.1 1479952 R 5874 CDS TA17700 3865359 complement(join(1481139..1481657,1481713..1481754)) 3 1 NC_011100.1 Contains 4 putative transmembrane domains; 4 probable transmembrane helices predicted for TA17700 by TMHMM2.0 at aa 71-93, 98-120, 132-151 and 155-177; integral membrane protein, putative 1481754 3865359 TA17700 Theileria annulata integral membrane protein, putative XP_955375.1 1481139 R 5874 CDS TA17705 3865360 join(1482682..1482792,1482969..1483386,1483419..1483723,1483753..1484220,1484250..1484306,1484341..1484775) 3 1 NC_011100.1 Signal peptide predicted for TA17705 by SignalP 2.0 HMM (Signal peptide probability 0.972, signal anchor probability 0.000) with cleavage site probability 0.866 between residues 18 and 19; uncharacterized protein 1484775 3865360 TA17705 Theileria annulata uncharacterized protein XP_955376.1 1482682 D 5874 CDS TA17710 3865361 join(1485043..1485750,1485781..1486203,1486235..1486453) 3 1 NC_011100.1 uncharacterized protein 1486453 3865361 TA17710 Theileria annulata uncharacterized protein XP_955377.1 1485043 D 5874 CDS TA17715 3865167 join(1486928..1486949,1487012..1487117,1487161..1487406,1487443..1487527) 3 1 NC_011100.1 60S ribosomal protein l25, putative 1487527 3865167 TA17715 Theileria annulata 60S ribosomal protein l25, putative XP_955378.1 1486928 D 5874 CDS TA17725 3865169 complement(join(1487563..1487766,1487797..1487894,1487924..1488271,1488328..1488424)) 3 1 NC_011100.1 Pfam hit (1.4e-04) to Acetyltransferase (GNAT) family domain; contains 1 putative transmembrane domain; 1 probable transmembrane helix predicted for TA17725 by TMHMM2.0 at aa 5-27; Acetyltransferase (GNAT) family protein, putative 1488424 3865169 TA17725 Theileria annulata Acetyltransferase (GNAT) family protein, putative XP_955379.1 1487563 R 5874 CDS TA17730 3865170 join(1488548..1488644,1488698..1488798,1488883..1488996,1489118..1489135) 3 1 NC_011100.1 vacuolar ATP synthase subunit g, putative 1489135 3865170 TA17730 Theileria annulata vacuolar ATP synthase subunit g, putative XP_955380.1 1488548 D 5874 CDS TA17735 3865171 join(1489244..1489999,1490029..1490222,1490252..1491208,1491238..1491406,1491473..1491577,1491609..1491728) 3 1 NC_011100.1 uncharacterized protein 1491728 3865171 TA17735 Theileria annulata uncharacterized protein XP_955381.1 1489244 D 5874 CDS TA17740 3865172 complement(join(1491806..1492356,1492386..1492761)) 3 1 NC_011100.1 6 probable transmembrane helices predicted for TA17740 by TMHMM2.0 at aa 34-53, 75-97, 118-140, 160-182, 194-213 and 228-247; Signal anchor predicted for TA17740 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.990) with cleavage site probability 0.001 between residues 53 and 54; uncharacterized protein 1492761 3865172 TA17740 Theileria annulata uncharacterized protein XP_955382.1 1491806 R 5874 CDS TA17745 3865173 join(1493503..1493831,1493863..1494190,1494222..1494395) 3 1 NC_011100.1 6 probable transmembrane helices predicted for TA17745 by TMHMM2.0 at aa 21-43, 53-72, 110-132, 142-164, 207-229 and 251-273; Signal anchor predicted for TA17745 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.976) with cleavage site probability 0.000 between residues 43 and 44; uncharacterized protein 1494395 3865173 TA17745 Theileria annulata uncharacterized protein XP_955383.1 1493503 D 5874 CDS TA17750 3865174 join(1494905..1496536,1496610..1496909) 3 1 NC_011100.1 Contains 3 putative rna-binding domains; RNA splicing factor, putative 1496909 3865174 TA17750 Theileria annulata RNA splicing factor, putative XP_955384.1 1494905 D 5874 CDS TA17755 3865175 join(1497099..1497182,1497211..1497302,1497334..1497511,1497641..1497805,1497832..1497868,1497899..1497968,1497998..1498105,1498214..1498274,1498307..1498349,1498439..1498651,1498719..1498919,1498988..1499060,1499099..1499165,1499208..1499270,1499323..1499373,1499441..1499512,1499575..1499820) 3 1 NC_011100.1 DNA topoisomerase iii, putative 1499820 3865175 TA17755 Theileria annulata DNA topoisomerase iii, putative XP_955385.1 1497099 D 5874 CDS TA17760 3865176 complement(join(1499881..1500266,1500327..1500408,1500454..1500771,1500859..1500966,1501012..1501187,1501256..1501346,1501386..1501922,1501969..1502217)) 3 1 NC_011100.1 uncharacterized protein 1502217 3865176 TA17760 Theileria annulata uncharacterized protein XP_955386.1 1499881 R 5874 CDS TA17765 3865177 complement(join(1502337..1502559,1502666..1503288)) 3 1 NC_011100.1 uncharacterized protein 1503288 3865177 TA17765 Theileria annulata uncharacterized protein XP_955387.1 1502337 R 5874 CDS TA17770 3865178 complement(join(1503625..1503799,1503872..1503971,1504001..1504050,1504080..1504196,1504276..1504484,1504526..1504576)) 3 1 NC_011100.1 uncharacterized protein 1504576 3865178 TA17770 Theileria annulata uncharacterized protein XP_955388.1 1503625 R 5874 CDS TA17785 3865181 complement(join(1504824..1505063,1505122..1505182,1505272..1505410,1505444..1505549)) 3 1 NC_011100.1 Pfam hit (1.00e-26) to Hamp1_like domain; ham1-like protein, putative 1505549 3865181 TA17785 Theileria annulata ham1-like protein, putative XP_955389.1 1504824 R 5874 CDS TA17790 3865182 complement(join(1505712..1505741,1505841..1508832,1508860..1510970)) 3 1 NC_011100.1 Exon II is uncertain; uncharacterized protein 1510970 3865182 TA17790 Theileria annulata uncharacterized protein XP_955390.1 1505712 R 5874 CDS TA17795 3865183 complement(1511264..1512052) 3 1 NC_011100.1 40s ribosomal protein s3a, putative 1512052 3865183 TA17795 Theileria annulata 40s ribosomal protein s3a, putative XP_955391.1 1511264 R 5874 CDS TA17800 3865184 complement(join(1512880..1512978,1513018..1513035)) 3 1 NC_011100.1 uncharacterized protein 1513035 3865184 TA17800 Theileria annulata uncharacterized protein XP_955392.1 1512880 R 5874 CDS TA17805 3865185 complement(join(1513206..1513340,1513429..1514631)) 3 1 NC_011100.1 elongation factor tu, putative 1514631 3865185 TA17805 Theileria annulata elongation factor tu, putative XP_955393.1 1513206 R 5874 CDS TA17810 3865186 complement(join(1514802..1515011,1515042..1515301,1515331..1515440,1515480..1515596,1515639..1515777,1515834..1515930,1515960..1515994,1516025..1516088,1516118..1516253,1516304..1516408,1516486..1516561,1516607..1516685)) 3 1 NC_011100.1 Pfam hit to protein kinase domain(6.7e-06); protein kinase, putative 1516685 3865186 TA17810 Theileria annulata protein kinase, putative XP_955394.1 1514802 R 5874 CDS TA17815 3864982 complement(join(1516764..1516838,1516990..1517015,1517047..1517238,1517268..1517538,1517571..1517696)) 3 1 NC_011100.1 uncharacterized protein 1517696 3864982 TA17815 Theileria annulata uncharacterized protein XP_955395.1 1516764 R 5874 CDS TA17820 3864983 join(1518002..1518120,1518175..1518212,1518247..1518485) 3 1 NC_011100.1 uncharacterized protein 1518485 3864983 TA17820 Theileria annulata uncharacterized protein XP_955396.1 1518002 D 5874 CDS TA17825 3864984 complement(join(1518619..1518688,1518736..1518818,1518913..1519046,1519077..1519248,1519276..1520733)) 3 1 NC_011100.1 Significant SMART hit (2.2e-43) to S_TKc domain and Pfam hit (5.3e-41) to pkinase domain; serine/threonine kinase, putative 1520733 3864984 TA17825 Theileria annulata serine/threonine kinase, putative XP_955397.1 1518619 R 5874 CDS TA17830 3864985 join(1521055..1521154,1521259..1522542,1522601..1523256) 3 1 NC_011100.1 uncharacterized protein 1523256 3864985 TA17830 Theileria annulata uncharacterized protein XP_955398.1 1521055 D 5874 CDS TA17835 3864986 complement(join(1523538..1523645,1523692..1523982,1524041..1524257,1524328..1524530,1524563..1524619,1524696..1524770,1524822..1524945,1524996..1525134,1525220..1525326,1525380..1525507,1525568..1525704,1525796..1525883)) 3 1 NC_011100.1 Significant Pfam hit (6.00e-34)to AAA family ATPase domain; AAA family ATPase, putative 1525883 3864986 TA17835 Theileria annulata AAA family ATPase, putative XP_955399.1 1523538 R 5874 CDS TA17840 3864987 join(1526453..1526511,1526543..1526652,1526723..1527233,1527408..1527444) 3 1 NC_011100.1 uncharacterized protein 1527444 3864987 TA17840 Theileria annulata uncharacterized protein XP_955400.1 1526453 D 5874 CDS TA17845 3864988 complement(join(1527460..1528727,1528768..1529191)) 3 1 NC_011100.1 uncharacterized protein 1529191 3864988 TA17845 Theileria annulata uncharacterized protein XP_955401.1 1527460 R 5874 CDS TA17850 3864989 complement(join(1529399..1529524,1529555..1529806,1529838..1529951,1530006..1530123,1530152..1530199,1530230..1530326,1530356..1530393,1530423..1530496,1530527..1530601,1530635..1530698,1530742..1530819,1530853..1531004)) 3 1 NC_011100.1 uncharacterized protein 1531004 3864989 TA17850 Theileria annulata uncharacterized protein XP_955402.1 1529399 R 5874 CDS TA17855 3864990 join(1531044..1531087,1531209..1531397,1531430..1531510,1531542..1531621,1531655..1531756,1531785..1531971,1532010..1532061,1532091..1532146,1532177..1532232,1532264..1532320,1532382..1532869) 3 1 NC_011100.1 Pfam hit (2.2e-22) to Met10+-like protein; Met10+-like protein, putative 1532869 3864990 TA17855 Theileria annulata Met10+-like protein, putative XP_955403.1 1531044 D 5874 CDS TA17865 3864991 1534630..1536159 3 1 NC_011100.1 9 probable transmembrane helices predicted for TA17865 by TMHMM2.0 at aa 43-65, 119-141, 145-167, 174-196, 211-233, 291-313, 362-384, 405-424 and 434-456; Theileria-specific integral membrane protein, putative 1536159 3864991 TA17865 Theileria annulata Theileria-specific integral membrane protein, putative XP_955404.1 1534630 D 5874 CDS TA17870 3864992 complement(join(1536299..1536797,1536828..1536943,1536977..1537020,1537050..1537220,1537268..1537358)) 3 1 NC_011100.1 protein farnesyltransferase alpha subunit, putative 1537358 3864992 TA17870 Theileria annulata protein farnesyltransferase alpha subunit, putative XP_955405.1 1536299 R 5874 CDS TA17875 3864993 complement(join(1537469..1537779,1537817..1538194,1538236..1538377)) 3 1 NC_011100.1 uncharacterized protein 1538377 3864993 TA17875 Theileria annulata uncharacterized protein XP_955406.1 1537469 R 5874 CDS TA17880 3864994 complement(join(1538504..1538560,1538587..1538960,1538991..1539554,1539566..1539831,1539876..1540140,1540201..1540381,1540454..1540513)) 3 1 NC_011100.1 SMART match (5.53e-07) to SANT domain and Pfam match (1.56e-06) to DNA-binding domain; SWI3-like protein, putative 1540513 3864994 TA17880 Theileria annulata SWI3-like protein, putative XP_955407.1 1538504 R 5874 CDS TA17890 3864996 complement(join(1540611..1540622,1540666..1540720,1540751..1540818,1540853..1540950,1540982..1541083,1541196..1542056,1542088..1542180,1542227..1542287,1542344..1542361)) 3 1 NC_011100.1 rabgdi protein, putative 1542361 3864996 TA17890 Theileria annulata rabgdi protein, putative XP_955408.1 1540611 R 5874 CDS TA17895 3864997 1543173..1543682 3 1 NC_011100.1 40S ribosomal protein s19, putative 1543682 3864997 TA17895 Theileria annulata 40S ribosomal protein s19, putative XP_955409.1 1543173 D 5874 CDS TA17900 3864998 complement(1543857..1544285) 3 1 NC_011100.1 40S ribosomal protein s12, putative 1544285 3864998 TA17900 Theileria annulata 40S ribosomal protein s12, putative XP_955410.1 1543857 R 5874 CDS TA17905 3864999 complement(1545062..1546162) 3 1 NC_011100.1 eukaryotic translation initiation factor 5, putative 1546162 3864999 TA17905 Theileria annulata eukaryotic translation initiation factor 5, putative XP_955411.1 1545062 R 5874 CDS TA17910 3865000 join(1547230..1547418,1547450..1547815) 3 1 NC_011100.1 uncharacterized protein 1547815 3865000 TA17910 Theileria annulata uncharacterized protein XP_955412.1 1547230 D 5874 CDS TA17915 3864909 1548198..1549616 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA17915 by TMHMM2.0 at aa 433-452; uncharacterized protein 1549616 3864909 TA17915 Theileria annulata uncharacterized protein XP_955413.1 1548198 D 5874 CDS TA17920 3864910 1549955..1550755 3 1 NC_011100.1 Contains one putative transmembrane domain; 1 probable transmembrane helix predicted for TA17920 by TMHMM2.0 at aa 212-234; uncharacterized protein 1550755 3864910 TA17920 Theileria annulata uncharacterized protein XP_955414.1 1549955 D 5874 CDS TA17925 3864911 complement(join(1551024..1551457,1551526..1551773,1551847..1552465,1552530..1552865,1552937..1553147)) 3 1 NC_011100.1 fad-dependent glycerol-3-phosphate dehydrogenase, putative 1553147 3864911 TA17925 Theileria annulata fad-dependent glycerol-3-phosphate dehydrogenase, putative XP_955415.1 1551024 R 5874 CDS TA17930 3864912 complement(1553640..1554914) 3 1 NC_011100.1 uncharacterized protein 1554914 3864912 TA17930 Theileria annulata uncharacterized protein XP_955416.1 1553640 R 5874 CDS TA17935 3864913 join(1556387..1556897,1556929..1556982,1557037..1557777,1557812..1557966,1558136..1558288) 3 1 NC_011100.1 uncharacterized protein 1558288 3864913 TA17935 Theileria annulata uncharacterized protein XP_955417.1 1556387 D 5874 CDS TA17950 3864916 join(1558354..1558492,1558647..1559059) 3 1 NC_011100.1 Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA17950 by TMHMM2.0 at aa 112-134 and 144-166; uncharacterized protein 1559059 3864916 TA17950 Theileria annulata uncharacterized protein XP_955418.1 1558354 D 5874 CDS TA17955 3864917 1559349..1559747 3 1 NC_011100.1 3 probable transmembrane helices predicted for TA17955 by TMHMM2.0 at aa 4-26, 39-58 and 63-85; Signal peptide predicted for TA17955 by SignalP 2.0 HMM (Signal peptide probability 0.940, signal anchor probability 0.025) with cleavage site probability 0.555 between residues 21 and 22; uncharacterized protein 1559747 3864917 TA17955 Theileria annulata uncharacterized protein XP_955419.1 1559349 D 5874 CDS TA17960 3864918 1560100..1560966 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA17960 by TMHMM2.0 at aa 256-278; uncharacterized protein 1560966 3864918 TA17960 Theileria annulata uncharacterized protein XP_955420.1 1560100 D 5874 CDS TA17965 3864919 join(1561181..1561306,1561373..1561449,1561525..1561612) 3 1 NC_011100.1 uncharacterized protein 1561612 3864919 TA17965 Theileria annulata uncharacterized protein XP_955421.1 1561181 D 5874 CDS TA17970 3864920 complement(1562006..1563658) 3 1 NC_011100.1 t-complex protein beta subunit, putative 1563658 3864920 TA17970 Theileria annulata t-complex protein beta subunit, putative XP_955422.1 1562006 R 5874 CDS TA17975 3864921 1564673..1566280 3 1 NC_011100.1 uncharacterized protein 1566280 3864921 TA17975 Theileria annulata uncharacterized protein XP_955423.1 1564673 D 5874 CDS TA17980 3864922 join(1566600..1566702,1566798..1566869,1566908..1566996) 3 1 NC_011100.1 u6 snrna-associated sm-like protein, putative 1566996 3864922 TA17980 Theileria annulata u6 snrna-associated sm-like protein, putative XP_955424.1 1566600 D 5874 CDS TA17985 3864923 complement(join(1567165..1567431,1567461..1567499,1567531..1567595,1567628..1567765,1567795..1567981,1568044..1568133)) 3 1 NC_011100.1 zinc finger protein, putative 1568133 3864923 TA17985 Theileria annulata zinc finger protein, putative XP_955425.1 1567165 R 5874 CDS TA17990 3864924 join(1568343..1568552,1568591..1568785,1568818..1569001,1569031..1569127,1569158..1569273,1569306..1569446,1569476..1569558,1569590..1569652,1569683..1569787,1570009..1570114,1570228..1570464,1570568..1570650) 3 1 NC_011100.1 wd40-repeat protein, putative 1570650 3864924 TA17990 Theileria annulata wd40-repeat protein, putative XP_955426.1 1568343 D 5874 CDS TA17995 3864925 join(1570755..1570808,1570865..1571077) 3 1 NC_011100.1 Pfam hit (1.0e-10) to zf-Tim10_DDP domain; small zinc finger protein Tim10 homologue, putative 1571077 3864925 TA17995 Theileria annulata small zinc finger protein Tim10 homologue, putative XP_955427.1 1570755 D 5874 CDS TA18000 3864926 1571269..1574148 3 1 NC_011100.1 Contains a putative signal peptide; shows match (9.6e-09) to Pfam rrm domain; RNA-binding protein, putative 1574148 3864926 TA18000 Theileria annulata RNA-binding protein, putative XP_955428.1 1571269 D 5874 CDS TA18005 3864927 join(1574584..1576563,1576627..1576779,1576815..1576988) 3 1 NC_011100.1 Shows weak similarity (9.8e-01) to Pfam abhydrolase domain; could function as a possible enzyme; some similarity to lysophospholipases from P. falciparum malaria; not enough evidence to determine the nature of this gene product; uncharacterized protein 1576988 3864927 TA18005 Theileria annulata uncharacterized protein XP_955429.1 1574584 D 5874 CDS TA18010 3864928 1577541..1579043 3 1 NC_011100.1 Contains 10 putative transmembrane domains; 10 probable transmembrane helices predicted for TA18010 by TMHMM2.0 at aa 38-60, 82-104, 113-135, 145-164, 171-193, 208-230, 271-293, 306-328, 341-363 and 416-438; integral membrane protein, putative 1579043 3864928 TA18010 Theileria annulata integral membrane protein, putative XP_955430.1 1577541 D 5874 CDS TA18015 3864634 complement(join(1579323..1579479,1579593..1579755,1579785..1580326,1580373..1581535)) 3 1 NC_011100.1 uncharacterized protein 1581535 3864634 TA18015 Theileria annulata uncharacterized protein XP_955431.1 1579323 R 5874 CDS TA18020 3864635 join(1582048..1582096,1582140..1582252,1582323..1582581,1582611..1582695,1582726..1582945) 3 1 NC_011100.1 uncharacterized protein 1582945 3864635 TA18020 Theileria annulata uncharacterized protein XP_955432.1 1582048 D 5874 CDS TA18025 3864636 complement(join(1583104..1583474,1583517..1584090)) 3 1 NC_011100.1 eb1 protein homologue, putative 1584090 3864636 TA18025 Theileria annulata eb1 protein homologue, putative XP_955433.1 1583104 R 5874 CDS TA18030 3864637 complement(join(1584231..1584286,1584403..1584657,1584689..1585172,1585249..1585254)) 3 1 NC_011100.1 60S ribosomal protein l7, putative 1585254 3864637 TA18030 Theileria annulata 60S ribosomal protein l7, putative XP_955434.1 1584231 R 5874 CDS TA18035 3864638 complement(join(1585813..1586061,1586337..1586515,1586653..1586662)) 3 1 NC_011100.1 40s ribosomal protein s23, putative 1586662 3864638 TA18035 Theileria annulata 40s ribosomal protein s23, putative XP_955435.1 1585813 R 5874 CDS TA18040 3864639 complement(join(1587079..1587497,1587569..1588741,1588836..1589372,1589448..1591053)) 3 1 NC_011100.1 DNA-directed RNA polymerase iii, putative 1591053 3864639 TA18040 Theileria annulata DNA-directed RNA polymerase iii, putative XP_955436.1 1587079 R 5874 CDS TA18045 3864640 join(1591550..1591594,1591703..1591903,1591954..1597761,1597827..1598064,1598121..1598329,1598387..1598632) 3 1 NC_011100.1 u5 small nuclear ribonucleoprotein-specific helicase, putative 1598632 3864640 TA18045 Theileria annulata u5 small nuclear ribonucleoprotein-specific helicase, putative XP_955437.1 1591550 D 5874 CDS TA18060 3864643 complement(1599066..1606340) 3 1 NC_011100.1 11 probable transmembrane helices predicted for TA18060 by TMHMM2.0 at aa 27-49, 70-92, 102-124, 131-153, 213-235, 255-277, 302-324, 337-359, 1769-1787, 1895-1917 and 1932-1954; Signal anchor predicted for TA18060 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.996) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein 1606340 3864643 TA18060 Theileria annulata uncharacterized protein XP_955438.1 1599066 R 5874 CDS TA18065 3864644 join(1607237..1607248,1607284..1607706) 3 1 NC_011100.1 uncharacterized protein 1607706 3864644 TA18065 Theileria annulata uncharacterized protein XP_955439.1 1607237 D 5874 CDS TA18070 3864645 join(1608424..1609981,1610228..1613928) 3 1 NC_011100.1 11 probable transmembrane helices predicted for TA18070 by TMHMM2.0 at aa 27-49, 70-92, 102-124, 131-153, 213-235, 255-277, 302-324, 337-359, 1097-1115, 1223-1245 and 1260-1282; Signal anchor predicted for TA18070 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.996) with cleavage site probability 0.000 between residues 49 and 50; uncharacterized protein 1613928 3864645 TA18070 Theileria annulata uncharacterized protein XP_955440.1 1608424 D 5874 CDS TA18075 3864646 complement(join(1614211..1615061,1615165..1615367,1615452..1621350,1621528..1621546)) 3 1 NC_011100.1 uncharacterized protein 1621546 3864646 TA18075 Theileria annulata uncharacterized protein XP_955441.1 1614211 R 5874 CDS TA18080 3864647 1622365..1623633 3 1 NC_011100.1 Weak Pfam hit(3.2e-04) to Rhomboid family domain; contains a putative signal peptide; 4 probable transmembrane helices predicted for TA18080 by TMHMM2.0 at aa 228-250, 352-371, 375-397 and 404-421; Signal peptide predicted for TA18080 by SignalP 2.0 HMM (Signal peptide probability 0.978, signal anchor probability 0.000) with cleavage site probability 0.382 between residues 19 and 20; GPI-Anchor Signal predicted for TA18080 by DGPI v2.04, no cleavage site predicted; putative rhomboid family protein 1623633 3864647 TA18080 Theileria annulata putative rhomboid family protein XP_955442.1 1622365 D 5874 CDS TA18085 3864648 complement(join(1623713..1623858,1623952..1624123,1624173..1626278)) 3 1 NC_011100.1 uncharacterized protein 1626278 3864648 TA18085 Theileria annulata uncharacterized protein XP_955443.1 1623713 R 5874 CDS TA18090 3864649 join(1626731..1626761,1626799..1627388) 3 1 NC_011100.1 60S ribosomal protein l15, putative 1627388 3864649 TA18090 Theileria annulata 60S ribosomal protein l15, putative XP_955444.1 1626731 D 5874 CDS TA18095 3864650 join(1627610..1627712,1627809..1627883,1627945..1628128,1628155..1628232,1628263..1628350,1628381..1628404,1628501..1628555,1628635..1628842,1628918..1629004,1629063..1629170,1629210..1629312) 3 1 NC_011100.1 Weak Pfam hit(1.3e-03) to Clathrein_adaptor complex side chain; clathrin adapter complex-related protein, putative 1629312 3864650 TA18095 Theileria annulata clathrin adapter complex-related protein, putative XP_955445.1 1627610 D 5874 CDS TA18100 3864651 join(1629429..1629492,1629531..1629674,1629720..1629809,1629842..1629947,1630015..1630138,1630168..1631121) 3 1 NC_011100.1 malate:quinone oxidoreductase, putative 1631121 3864651 TA18100 Theileria annulata malate:quinone oxidoreductase, putative XP_955446.1 1629429 D 5874 CDS TA18105 3864652 complement(join(1631208..1631678,1631709..1631843,1631898..1633484)) 3 1 NC_011100.1 uncharacterized protein 1633484 3864652 TA18105 Theileria annulata uncharacterized protein XP_955447.1 1631208 R 5874 CDS TA18110 3864712 join(1633854..1633865,1633942..1634211,1634366..1634602,1634627..1634884) 3 1 NC_011100.1 uncharacterized protein 1634884 3864712 TA18110 Theileria annulata uncharacterized protein XP_955448.1 1633854 D 5874 CDS TA18115 3864713 complement(1635231..1636403) 3 1 NC_011100.1 uncharacterized protein 1636403 3864713 TA18115 Theileria annulata uncharacterized protein XP_955449.1 1635231 R 5874 CDS TA18120 3864714 complement(1636593..1643810) 3 1 NC_011100.1 uncharacterized protein 1643810 3864714 TA18120 Theileria annulata uncharacterized protein XP_955450.1 1636593 R 5874 CDS TA18125 3864715 complement(join(1644158..1644283,1644315..1644410,1644441..1644509,1644537..1644649,1644681..1644769,1644803..1644892,1644920..1645092)) 3 1 NC_011100.1 uncharacterized protein 1645092 3864715 TA18125 Theileria annulata uncharacterized protein XP_955451.1 1644158 R 5874 CDS TA18130 3864716 join(1645861..1646029,1646123..1646293,1646326..1646589,1646691..1647094) 3 1 NC_011100.1 Contains putative signal peptide; contains 6 putative transmembrane domains; Shows moderate Pfam hit (1.2e-08) to Zip transporter domain; 8 probable transmembrane helices predicted for TA18130 by TMHMM2.0 at aa 4-26, 47-69, 89-111, 178-200, 215-237, 244-266, 272-294 and 307-329; zinc-transport protein, putative 1647094 3864716 TA18130 Theileria annulata zinc-transport protein, putative XP_955452.1 1645861 D 5874 CDS TA18135 3864717 complement(join(1647174..1647374,1647492..1647623,1647677..1647820,1647904..1648008)) 3 1 NC_011100.1 nucleoside diphospahte hydrolase, putative 1648008 3864717 TA18135 Theileria annulata nucleoside diphospahte hydrolase, putative XP_955453.1 1647174 R 5874 CDS TA18140 3864718 join(1656229..1656374,1656533..1656596,1656625..1656759,1656794..1656840,1656966..1657058,1657114..1657246,1657310..1657413,1657519..1657692,1657788..1658121) 3 1 NC_011100.1 uncharacterized protein 1658121 3864718 TA18140 Theileria annulata uncharacterized protein XP_955454.1 1656229 D 5874 CDS TA18145 3864719 complement(join(1658386..1658614,1658760..1658885,1658913..1658995,1659041..1659097,1659131..1659283,1659323..1659388,1659468..1659581,1659616..1659741)) 3 1 NC_011100.1 uncharacterized protein 1659741 3864719 TA18145 Theileria annulata uncharacterized protein XP_955455.1 1658386 R 5874 CDS TA18150 3864720 join(1659892..1659904,1659938..1659994,1660024..1660238) 3 1 NC_011100.1 1 probable transmembrane helix predicted for TA18150 by TMHMM2.0 at aa 12-34; uncharacterized protein 1660238 3864720 TA18150 Theileria annulata uncharacterized protein XP_955456.1 1659892 D 5874 CDS TA18155 3864721 complement(join(1660376..1661419,1661459..1661541,1661569..1662034)) 3 1 NC_011100.1 Pfam hit (3.1e-09) to CAAX amino terminal protease family domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 7 probable transmembrane helices predicted for TA18155 by TMHMM2.0 at aa 10-32, 176-198, 213-235, 304-326, 346-365, 460-482 and 497-519; Signal peptide predicted for TA18155 by SignalP 2.0 HMM (Signal peptide probability 0.731, signal anchor probability 0.116) with cleavage site probability 0.386 between residues 26 and 27; protease, putative 1662034 3864721 TA18155 Theileria annulata protease, putative XP_955457.1 1660376 R 5874 CDS TA18165 3864723 join(1662284..1662389,1662419..1662614,1662645..1662710,1662740..1662887,1662917..1663261,1663358..1663423,1663495..1663656,1663685..1663791,1663834..1663882,1663913..1663938,1664096..1664208,1664239..1664347,1664449..1664653) 3 1 NC_011100.1 uncharacterized protein 1664653 3864723 TA18165 Theileria annulata uncharacterized protein XP_955458.1 1662284 D 5874 CDS TA18170 3864724 join(1664889..1665075,1665139..1665212,1665531..1665713,1665745..1665867,1665971..1666111,1666228..1666541,1666641..1666842) 3 1 NC_011100.1 adenylosuccinate lyase, putative 1666842 3864724 TA18170 Theileria annulata adenylosuccinate lyase, putative XP_955459.1 1664889 D 5874 CDS TA18175 3864725 complement(join(1666956..1667044,1667087..1667250,1667335..1667390,1667483..1667584,1667651..1667839,1667871..1667954,1667985..1668017)) 3 1 NC_011100.1 ribosomal protein s9, putative 1668017 3864725 TA18175 Theileria annulata ribosomal protein s9, putative XP_955460.1 1666956 R 5874 CDS TA18180 3864726 complement(join(1668103..1668285,1668345..1668501,1668576..1668718,1668749..1668844,1668896..1668979)) 3 1 NC_011100.1 small GTP-binding protein Rab1, putative 1668979 3864726 TA18180 Theileria annulata small GTP-binding protein Rab1, putative XP_955461.1 1668103 R 5874 CDS TA18185 3864727 join(1670491..1670864,1670941..1671139,1671169..1671303) 3 1 NC_011100.1 uncharacterized protein 1671303 3864727 TA18185 Theileria annulata uncharacterized protein XP_955462.1 1670491 D 5874 CDS TA18190 3864728 complement(join(1671529..1671623,1671786..1671797,1671888..1672055,1672139..1672201,1672232..1672268,1672299..1672388,1672419..1672480,1672576..1672680,1672725..1672845)) 3 1 NC_011100.1 uncharacterized protein 1672845 3864728 TA18190 Theileria annulata uncharacterized protein XP_955463.1 1671529 R 5874 CDS TA18195 3864729 complement(1673016..1673939) 3 1 NC_011100.1 uncharacterized protein 1673939 3864729 TA18195 Theileria annulata uncharacterized protein XP_955464.1 1673016 R 5874 CDS TA18200 3864730 join(1674351..1674530,1674572..1674645,1674707..1674772,1674802..1674846,1675215..1675302,1675449..1675670) 3 1 NC_011100.1 Signal anchor predicted for TA18200 by SignalP 2.0 HMM (Signal peptide probability 0.177, signal anchor probability 0.764) with cleavage site probability 0.103 between residues 22 and 23; uncharacterized protein 1675670 3864730 TA18200 Theileria annulata uncharacterized protein XP_955465.1 1674351 D 5874 CDS TA18205 3864731 join(1675762..1675772,1675800..1675981,1676069..1676238,1676394..1676640,1676672..1676772,1676803..1677003,1677035..1677085,1677155..1677209,1677251..1677545,1677575..1677683,1677714..1677883,1677917..1678004,1678035..1678106,1678138..1678218,1678253..1678301,1678381..1678427,1678460..1678498,1678540..1678734,1678765..1678855,1678892..1678986,1679017..1679100,1679130..1680026) 3 1 NC_011100.1 uncharacterized protein 1680026 3864731 TA18205 Theileria annulata uncharacterized protein XP_955466.1 1675762 D 5874 CDS TA18210 3865040 1680643..1686669 3 1 NC_011100.1 Contains putative signal peptide; contains 11 putative transmembrane domains; 12 probable transmembrane helices predicted for TA18210 by TMHMM2.0 at aa 25-47, 76-95, 102-124, 129-151, 216-238, 265-287, 308-330, 345-367, 549-571, 1348-1366, 1474-1496 and 1511-1533; Signal anchor predicted for TA18210 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.994) with cleavage site probability 0.000 between residues 49 and 50; integral membrane protein, putative 1686669 3865040 TA18210 Theileria annulata integral membrane protein, putative XP_955467.1 1680643 D 5874 CDS TA18220 3865042 complement(1686866..1690318) 3 1 NC_011100.1 Significant Pfam hit (5.8e-27) to Patatin-like phospholipase domain; contains putative signal peptide; patatin-like phospholipase, putative 1690318 3865042 TA18220 Theileria annulata patatin-like phospholipase, putative XP_955468.1 1686866 R 5874 CDS TA18225 3865043 complement(join(1690473..1691877,1691999..1692210,1692272..1692445)) 3 1 NC_011100.1 eukaryotic translation initiation factor 3 subunit 7, putative 1692445 3865043 TA18225 Theileria annulata eukaryotic translation initiation factor 3 subunit 7, putative XP_955469.1 1690473 R 5874 CDS TA18230 3865044 complement(join(1692603..1694622,1694653..1695269)) 3 1 NC_011100.1 histone deacetylase family protein, putative 1695269 3865044 TA18230 Theileria annulata histone deacetylase family protein, putative XP_955470.1 1692603 R 5874 CDS TA18235 3865045 complement(join(1695781..1696271,1696301..1696506,1696566..1696703,1696752..1697347,1697377..1697471,1697502..1697997,1698031..1698303)) 3 1 NC_011100.1 uncharacterized protein 1698303 3865045 TA18235 Theileria annulata uncharacterized protein XP_955471.1 1695781 R 5874 CDS TA18240 3865046 join(1698544..1698636,1698671..1703776) 3 1 NC_011100.1 Similar to several prokaryotic ATP-dependent RNA helicases; ATP-dependent RNA helicase, putative 1703776 3865046 TA18240 Theileria annulata ATP-dependent RNA helicase, putative XP_955472.1 1698544 D 5874 CDS TA18245 3865047 complement(join(1703960..1704328,1704387..1704622,1704763..1704847)) 3 1 NC_011100.1 uncharacterized protein 1704847 3865047 TA18245 Theileria annulata uncharacterized protein XP_955473.1 1703960 R 5874 CDS TA18250 3865048 join(1704954..1704999,1705034..1705098,1705138..1705281,1705314..1705397,1705447..1705492,1705554..1705720) 3 1 NC_011100.1 Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA18250 by TMHMM2.0 at aa 50-72 and 79-98; uncharacterized protein 1705720 3865048 TA18250 Theileria annulata uncharacterized protein XP_955474.1 1704954 D 5874 CDS TA18255 3865049 complement(join(1705814..1705949,1705987..1706050,1706111..1706294,1706326..1706436,1706466..1706522)) 3 1 NC_011100.1 Moderate Pfam hit (5.7e-09) cytidine deaminase domain; cytidine and deoxycytidylate deaminase family protein, putative 1706522 3865049 TA18255 Theileria annulata cytidine and deoxycytidylate deaminase family protein, putative XP_955475.1 1705814 R 5874 CDS TA18260 3865050 complement(join(1706718..1708129,1708159..1709152)) 3 1 NC_011100.1 uncharacterized protein 1709152 3865050 TA18260 Theileria annulata uncharacterized protein XP_955476.1 1706718 R 5874 CDS TA18265 3865051 join(1709339..1709428,1709517..1709720,1709773..1709928,1709962..1710020,1710050..1710098,1710130..1710207,1710277..1710358,1710393..1710546,1710573..1710744) 3 1 NC_011100.1 GTP-binding protein, putative 1710744 3865051 TA18265 Theileria annulata GTP-binding protein, putative XP_955477.1 1709339 D 5874 CDS TA18280 3865054 complement(join(1710917..1711896,1711973..1713350)) 3 1 NC_011100.1 uncharacterized protein 1713350 3865054 TA18280 Theileria annulata uncharacterized protein XP_955478.1 1710917 R 5874 CDS TA18285 3865055 join(1714530..1714541,1714789..1714992,1715084..1715271,1715329..1715843,1716028..1716111,1716145..1716314,1716357..1716786,1716847..1717262,1717303..1717454,1717484..1717607,1717649..1717736,1717768..1717847,1717877..1717952,1718024..1718116,1718334..1718378,1718421..1718620,1718678..1718889,1718922..1719106,1719161..1719546) 3 1 NC_011100.1 Shows Pfam hit (3.56e-05) to MACPF domain at the C-terminal end; the first 13 exons of the protein could be part of a separate hypothetical protein; perforin-related protein, putative 1719546 3865055 TA18285 Theileria annulata perforin-related protein, putative XP_955479.1 1714530 D 5874 CDS TA18290 3865056 join(1719639..1720185,1720240..1720306,1720339..1720453,1720485..1720639,1720693..1720780,1720863..1721072) 3 1 NC_011100.1 4 probable transmembrane helices predicted for TA18290 by TMHMM2.0 at aa 109-131, 231-248, 311-333 and 354-373; 4-hydroxybenzoate octaprenyltransferase, putative 1721072 3865056 TA18290 Theileria annulata 4-hydroxybenzoate octaprenyltransferase, putative XP_955480.1 1719639 D 5874 CDS TA18295 3865057 1721160..1722140 3 1 NC_011100.1 Signal peptide predicted for TA18295 by SignalP 2.0 HMM (Signal peptide probability 0.955, signal anchor probability 0.000) with cleavage site probability 0.883 between residues 19 and 20; Theileria-specific hypothetical protein, putative 1722140 3865057 TA18295 Theileria annulata Theileria-specific hypothetical protein, putative XP_955481.1 1721160 D 5874 CDS TA18300 3865058 join(1722327..1722477,1722564..1722964) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA18300 by TMHMM2.0 at aa 28-50 and 155-177; Signal anchor predicted for TA18300 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.681) with cleavage site probability 0.000 between residues 46 and 47; signal peptidase, putative 1722964 3865058 TA18300 Theileria annulata signal peptidase, putative XP_955482.1 1722327 D 5874 CDS TA18305 3865138 complement(join(1723042..1723160,1723190..1723393,1723431..1723763,1723830..1723913,1723944..1724073,1724104..1724133,1724281..1724385,1724419..1724478,1724544..1724600)) 3 1 NC_011100.1 uncharacterized protein 1724600 3865138 TA18305 Theileria annulata uncharacterized protein XP_955483.1 1723042 R 5874 CDS TA18315 3865139 complement(join(1725779..1725999,1726033..1726189,1726237..1726320,1726351..1726465,1726496..1726554,1726585..1726749,1726793..1726885,1726978..1727130,1727207..1727295,1727329..1727413)) 3 1 NC_011100.1 uncharacterized protein 1727413 3865139 TA18315 Theileria annulata uncharacterized protein XP_955484.1 1725779 R 5874 CDS TA18320 3865140 complement(join(1727558..1727852,1727926..1728059,1728114..1728283,1728380..1728491)) 3 1 NC_011100.1 proteasome subunit alpha type 2, putative 1728491 3865140 TA18320 Theileria annulata proteasome subunit alpha type 2, putative XP_955485.1 1727558 R 5874 CDS TA18325 3865141 complement(join(1728633..1729003,1729033..1729226,1729277..1729312,1729340..1729479,1729507..1729697,1729728..1729818)) 3 1 NC_011100.1 hit (7.79e-01) to MACPF domain; uncharacterized protein 1729818 3865141 TA18325 Theileria annulata uncharacterized protein XP_955486.1 1728633 R 5874 CDS TA18330 3865142 1730209..1732143 3 1 NC_011100.1 Putative signal peptide present; Theileria-specific hypothetical protein, putative 1732143 3865142 TA18330 Theileria annulata Theileria-specific hypothetical protein, putative XP_955487.1 1730209 D 5874 CDS TA18335 3865143 complement(join(1732463..1732566,1732596..1732876,1733004..1733095)) 3 1 NC_011100.1 uncharacterized protein 1733095 3865143 TA18335 Theileria annulata uncharacterized protein XP_955488.1 1732463 R 5874 CDS TA18340 3865144 complement(join(1733757..1733963,1734048..1734131,1734425..1734616,1734649..1734714)) 3 1 NC_011100.1 uncharacterized protein 1734714 3865144 TA18340 Theileria annulata uncharacterized protein XP_955489.1 1733757 R 5874 CDS TA18345 3865145 complement(join(1735762..1735896,1735929..1736131,1736253..1736330,1736477..1736557,1736715..1736781,1736935..1737022,1737054..1737183,1737464..1737778,1737809..1737864,1737897..1737952,1738035..1738564,1738594..1738711)) 3 1 NC_011100.1 uncharacterized protein 1738711 3865145 TA18345 Theileria annulata uncharacterized protein XP_955490.1 1735762 R 5874 CDS TA18350 3865146 complement(join(1739020..1739442,1739600..1739841,1740055..1740405,1740578..1741835)) 3 1 NC_011100.1 elongation factor g 1, mitochondrial precursor 1741835 3865146 TA18350 Theileria annulata elongation factor g 1, mitochondrial precursor XP_955491.1 1739020 R 5874 CDS TA18355 3865147 complement(join(1741992..1742281,1742492..1743037,1743269..1743674)) 3 1 NC_011100.1 uncharacterized protein 1743674 3865147 TA18355 Theileria annulata uncharacterized protein XP_955492.1 1741992 R 5874 CDS TA18360 3865148 join(1743976..1744255,1744335..1744484,1744718..1744840,1744913..1745038,1745070..1745200) 3 1 NC_011100.1 uncharacterized protein 1745200 3865148 TA18360 Theileria annulata uncharacterized protein XP_955493.1 1743976 D 5874 CDS TA18361 3865149 1745526..1746437 3 1 NC_011100.1 uncharacterized protein 1746437 3865149 TA18361 Theileria annulata uncharacterized protein XP_955494.1 1745526 D 5874 CDS TA18362 3865150 join(1746553..1746623,1746717..1746836,1746941..1747046,1747078..1747146,1747176..1747233,1747343..1747421,1747528..1747670,1747701..1747834) 3 1 NC_011100.1 tgf beta-inducible nuclear protein(TNP-1) 1, putative 1747834 3865150 TA18362 Theileria annulata tgf beta-inducible nuclear protein(TNP-1) 1, putative XP_955495.1 1746553 D 5874 CDS TA18363 3865151 1747993..1750038 3 1 NC_011100.1 Signal peptide predicted for TA18363 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.000) with cleavage site probability 0.523 between residues 21 and 22; uncharacterized protein 1750038 3865151 TA18363 Theileria annulata uncharacterized protein XP_955496.1 1747993 D 5874 CDS TA18365 3865152 1750292..1750792 3 1 NC_011100.1 uncharacterized protein 1750792 3865152 TA18365 Theileria annulata uncharacterized protein XP_955497.1 1750292 D 5874 CDS TA18370 3865153 complement(join(1751363..1751501,1751612..1751684,1751713..1751760,1751791..1751909,1752305..1752532,1752759..1752915,1753056..1753278,1753657..1753967,1754097..1754178)) 3 1 NC_011100.1 uncharacterized protein 1754178 3865153 TA18370 Theileria annulata uncharacterized protein XP_955498.1 1751363 R 5874 CDS TA18375 3865154 join(1754644..1755343,1755453..1755656,1755798..1755808,1756087..1757244,1757382..1757718,1757860..1758275) 3 1 NC_011100.1 uncharacterized protein 1758275 3865154 TA18375 Theileria annulata uncharacterized protein XP_955499.1 1754644 D 5874 CDS TA18390 3865157 join(1758379..1758723,1758779..1758910,1758991..1760388,1760503..1761700,1761851..1762251) 3 1 NC_011100.1 3 probable transmembrane helices predicted for TA18390 by TMHMM2.0 at aa 1009-1031, 1090-1112 and 1116-1138; Theileria-specific hypothetical protein, putative 1762251 3865157 TA18390 Theileria annulata Theileria-specific hypothetical protein, putative XP_955500.1 1758379 D 5874 CDS TA18395 3864753 join(1762991..1764456,1764536..1765446,1765653..1765940,1766244..1767704,1767777..1769419) 3 1 NC_011100.1 Contains 7 possible transmembrane domains; 7 probable transmembrane helices predicted for TA18395 by TMHMM2.0 at aa 1296-1318, 1345-1367, 1377-1394, 1420-1442, 1457-1476, 1496-1518 and 1798-1817; Theileria-specific hypothetical membrane protein, putative 1769419 3864753 TA18395 Theileria annulata Theileria-specific hypothetical membrane protein, putative XP_955501.1 1762991 D 5874 CDS TA18400 3864754 complement(join(1769545..1772022,1772099..1772119)) 3 1 NC_011100.1 ctd-like phosphatase, putative 1772119 3864754 TA18400 Theileria annulata ctd-like phosphatase, putative XP_955502.1 1769545 R 5874 CDS TA18405 3864755 join(1773087..1773474,1773655..1775726) 3 1 NC_011100.1 Contains possible KOW-like repeat elements; uncharacterized protein 1775726 3864755 TA18405 Theileria annulata uncharacterized protein XP_955503.1 1773087 D 5874 CDS TA18410 3864756 join(1775986..1776091,1776143..1776255,1776344..1776456,1776641..1776768,1776897..1777211,1777352..1779357) 3 1 NC_011100.1 transcription factor, putative 1779357 3864756 TA18410 Theileria annulata transcription factor, putative XP_955504.1 1775986 D 5874 CDS TA18415 3864757 complement(1779425..1780705) 3 1 NC_011100.1 uncharacterized protein 1780705 3864757 TA18415 Theileria annulata uncharacterized protein XP_955505.1 1779425 R 5874 CDS TA18420 3864758 complement(join(1780900..1781071,1781261..1781627,1781806..1782291,1782472..1782744,1782885..1783551)) 3 1 NC_011100.1 Contains 1 putative transmembrane domain; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA18420 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA18420 by SignalP 2.0 HMM (Signal peptide probability 0.786, signal anchor probability 0.112) with cleavage site probability 0.435 between residues 29 and 30; dead box RNA helicase, putative 1783551 3864758 TA18420 Theileria annulata dead box RNA helicase, putative XP_955506.1 1780900 R 5874 CDS TA18425 3864759 complement(join(1783899..1784120,1784172..1784303,1784385..1784537)) 3 1 NC_011100.1 uncharacterized protein 1784537 3864759 TA18425 Theileria annulata uncharacterized protein XP_955507.1 1783899 R 5874 CDS TA18430 3864760 join(1785286..1785389,1785420..1785561) 3 1 NC_011100.1 2 probable transmembrane helices predicted for TA18430 by TMHMM2.0 at aa 21-43 and 63-80; GPI-Anchor Signal predicted for TA18430 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1785561 3864760 TA18430 Theileria annulata uncharacterized protein XP_955508.1 1785286 D 5874 CDS TA18435 3864761 join(1786610..1788961,1789077..1790465) 3 1 NC_011100.1 Contains 3 putative transmembrane domains; 3 probable transmembrane helices predicted for TA18435 by TMHMM2.0 at aa 692-714, 946-968 and 1017-1039; uncharacterized protein 1790465 3864761 TA18435 Theileria annulata uncharacterized protein XP_955509.1 1786610 D 5874 CDS TA18440 3864762 join(1791099..1792214,1792528..1792640,1792854..1793173,1793211..1793755,1793791..1794379,1794414..1794577,1794717..1795737,1795764..1797214,1797295..1797515,1797554..1798783,1798942..1799168,1799398..1799441,1799523..1799639) 3 1 NC_011100.1 3 probable transmembrane helices predicted for TA18440 by TMHMM2.0 at aa 866-888, 931-953 and 2259-2281; uncharacterized protein 1799639 3864762 TA18440 Theileria annulata uncharacterized protein XP_955510.1 1791099 D 5874 CDS TA18445 3864763 complement(1799743..1800240) 3 1 NC_011100.1 uncharacterized protein 1800240 3864763 TA18445 Theileria annulata uncharacterized protein XP_955511.1 1799743 R 5874 CDS TA18450 3864764 join(1801009..1801288,1801319..1801429,1801640..1801864,1802019..1802309,1802498..1802508,1802540..1802821,1802938..1803216,1803371..1803638,1803813..1804070,1804308..1804624,1804656..1804703,1804877..1805797) 3 1 NC_011100.1 Contains 12 putative transmembrane domains; Apicoplast targetting peptide predicted by the PlasmoAP tool; 12 probable transmembrane helices predicted for TA18450 by TMHMM2.0 at aa 10-29, 160-177, 182-204, 216-234, 249-268, 275-297, 338-360, 517-536, 546-568, 602-624, 653-675 and 716-738; Signal anchor predicted for TA18450 by SignalP 2.0 HMM (Signal peptide probability 0.029, signal anchor probability 0.970) with cleavage site probability 0.012 between residues 27 and 28; integral membrane protein, putative 1805797 3864764 TA18450 Theileria annulata integral membrane protein, putative XP_955512.1 1801009 D 5874 CDS TA18455 3864765 complement(1805867..1806763) 3 1 NC_011100.1 uncharacterized protein 1806763 3864765 TA18455 Theileria annulata uncharacterized protein XP_955513.1 1805867 R 5874 CDS TA18460 3864766 complement(join(1807042..1807173,1807439..1807827,1807858..1808224,1808389..1808488,1808634..1809125,1809254..1809378,1809666..1809843,1809940..1810175,1810209..1810278,1810356..1810459,1810765..1810944,1811054..1811145,1811238..1811314,1811436..1811584)) 3 1 NC_011100.1 Contains 2 putative transmembrane domains; 2 probable transmembrane helices predicted for TA18460 by TMHMM2.0 at aa 315-337 and 358-380; uncharacterized protein 1811584 3864766 TA18460 Theileria annulata uncharacterized protein XP_955514.1 1807042 R 5874 CDS TA18470 3864767 complement(join(1812232..1813243,1813375..1813526,1813649..1813768,1813860..1813942,1814137..1814218,1814309..1814444,1814566..1814682,1814771..1814832,1814863..1814933,1815269..1815336,1815456..1815521,1815573..1815628,1815700..1815774)) 3 1 NC_011100.1 serine/threonine-protein kinase, putative 1815774 3864767 TA18470 Theileria annulata serine/threonine-protein kinase, putative XP_955515.1 1812232 R 5874 CDS TA18475 3864768 join(1816190..1816427,1816520..1816994,1817027..1817156,1817288..>1817455) 3 1 NC_011100.1 Significant Pfam hit (1.1e-31) to Histone-like transcription factor domain; Histone-like transcription factor, putative 1817455 3864768 TA18475 Theileria annulata Histone-like transcription factor, putative XP_955516.1 1816190 D 5874 CDS TA17470 3864578 join(1817874..1817927,1818055..1818110,1818148..1818188,1818216..1818325) 3 1 NC_011100.1 SMART 2 transmembrane domains at aa 24-46 and 66-85; 2 probable transmembrane helices predicted for TA17470 by TMHMM2.0 at aa 25-47 and 62-84; uncharacterized protein 1818325 3864578 TA17470 Theileria annulata uncharacterized protein XP_955517.1 1817874 D 5874 CDS TA17465 3864577 join(1818638..1818983,1819110..1819310,1819530..1820200) 3 1 NC_011100.1 Tap-921d01.p1c.C.cand.1 - score = 20.16; SMART pfam:Peptidase_C13 (PF01650) at aa 25-377, E()=5.20e-10; GPI anchor transamidase, putative 1820200 3864577 TA17465 Theileria annulata GPI anchor transamidase, putative XP_955518.1 1818638 D 5874 CDS TA17460 3864576 join(1820577..1820773,1820889..1821272,1821303..1821373,1821404..1821462,1821492..1821560,1821590..1821771,1821802..1821886,1821916..1822303,1822342..1822562) 3 1 NC_011100.1 note; Tap-921d01.p1c.C.cand.2 - score = 47.74; uncharacterized protein 1822562 3864576 TA17460 Theileria annulata uncharacterized protein XP_955519.1 1820577 D 5874 CDS TA17455 3864575 join(1822669..1823025,1823058..1823245,1823278..1823662) 3 1 NC_011100.1 note; Tap-921d01.p1c.C.cand.3 - score = 20.45; uncharacterized protein 1823662 3864575 TA17455 Theileria annulata uncharacterized protein XP_955520.1 1822669 D 5874 CDS TA17450 3865323 1824293..1825882 3 1 NC_011100.1 note; Tap-921d01.p1c.C.cand.4 - score = 32.18; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA17450 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA17450 by SignalP 2.0 HMM (Signal peptide probability 0.640, signal anchor probability 0.323) with cleavage site probability 0.265 between residues 23 and 24; uncharacterized protein 1825882 3865323 TA17450 Theileria annulata uncharacterized protein XP_955521.1 1824293 D 5874 CDS TA17445 3865322 complement(1826267..1827931) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.12 - score = 49.89; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA17445 by TMHMM2.0 at aa 7-26; Signal anchor predicted for TA17445 by SignalP 2.0 HMM (Signal peptide probability 0.238, signal anchor probability 0.762) with cleavage site probability 0.096 between residues 23 and 24; uncharacterized protein 1827931 3865322 TA17445 Theileria annulata uncharacterized protein XP_955522.1 1826267 R 5874 CDS TA17440 3865321 complement(join(1828066..1828159,1828243..1828433)) 3 1 NC_011100.1 SMART 2 transmembrane domains at aa 20-42 and 63-85; 2 probable transmembrane helices predicted for TA17440 by TMHMM2.0 at aa 20-42 and 63-85; uncharacterized protein 1828433 3865321 TA17440 Theileria annulata uncharacterized protein XP_955523.1 1828066 R 5874 CDS TA17435 3865320 complement(join(1828606..1828724,1828757..1828981,1829012..1829158,1829189..1829254,1829287..1829509)) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.12 - score = 49.89; uncharacterized protein 1829509 3865320 TA17435 Theileria annulata uncharacterized protein XP_955524.1 1828606 R 5874 CDS TA17430 3865319 join(1829639..1829708,1829753..1829831,1829869..1830021,1830054..1830140,1830171..1830453) 3 1 NC_011100.1 note; Tap-921d01.p1c.C.cand.5 - score = 17.39; uncharacterized protein 1830453 3865319 TA17430 Theileria annulata uncharacterized protein XP_955525.1 1829639 D 5874 CDS TA17425 3865318 complement(join(1830502..1830682,1830715..1831603,1831748..1832027,1832224..1832268)) 3 1 NC_011100.1 7 probable transmembrane helices predicted for TA17425 by TMHMM2.0 at aa 22-44, 110-129, 134-156, 232-254, 274-296, 402-424 and 429-451; Signal anchor predicted for TA17425 by SignalP 2.0 HMM (Signal peptide probability 0.251, signal anchor probability 0.664) with cleavage site probability 0.120 between residues 42 and 43; pre-protein translocase (SEC61 homologue), putative 1832268 3865318 TA17425 Theileria annulata pre-protein translocase (SEC61 homologue), putative XP_955526.1 1830502 R 5874 CDS TA17420 3865317 join(1832348..1832374,1832501..1833175) 3 1 NC_011100.1 Tap-921d01.p1c.C.cand.6 - score = 18.86; SMART pfam:vATP-synth_E (PF01991) at aa 16-219, E()=2.30e-24; vacuolar ATP synthase (E subunit), putative 1833175 3865317 TA17420 Theileria annulata vacuolar ATP synthase (E subunit), putative XP_955527.1 1832348 D 5874 CDS TA17415 3865316 complement(join(1833202..1833445,1833475..1833632,1833675..1833766,1833823..1833910)) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.10 - score = 12.49; uncharacterized protein 1833910 3865316 TA17415 Theileria annulata uncharacterized protein XP_955528.1 1833202 R 5874 CDS TA17410 3865315 complement(1834110..1834670) 3 1 NC_011100.1 SMART 3 transmembrane domains at aa 60-78, 95-117 and 144-166; 4 probable transmembrane helices predicted for TA17410 by TMHMM2.0 at aa 28-50, 60-78, 95-117 and 144-166; Signal anchor predicted for TA17410 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.994) with cleavage site probability 0.000 between residues 40 and 41; uncharacterized protein 1834670 3865315 TA17410 Theileria annulata uncharacterized protein XP_955529.1 1834110 R 5874 CDS TA17405 3865314 complement(1834921..1836501) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.9 - score = 28.63; Signal peptide predicted for TA17405 by SignalP 2.0 HMM (Signal peptide probability 0.855, signal anchor probability 0.122) with cleavage site probability 0.567 between residues 29 and 30; uncharacterized protein 1836501 3865314 TA17405 Theileria annulata uncharacterized protein XP_955530.1 1834921 R 5874 CDS TA17400 3865313 join(1837338..1837506,1837536..1837761,1837890..1837961,1838011..1838228,1838258..1838343,1838373..1838471,1838503..1838726,1838743..1838803) 3 1 NC_011100.1 note; SMART pfam:polyprenyl_synt (PF00348) at aa 46-329, E()=2.30e-34; 1 probable transmembrane helix predicted for TA17400 by TMHMM2.0 at aa 132-154; farnesyl pyrophosphate synthetase, putative 1838803 3865313 TA17400 Theileria annulata farnesyl pyrophosphate synthetase, putative XP_955531.1 1837338 D 5874 CDS TA17395 3865312 complement(join(1838822..1838920,1838955..1839123,1839202..1839247,1839280..1839403)) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.8 - score = 17.56; SMART HTH_XRE (SM0530) at aa 80-135, E()=1.04e-07; multiprotein bridging factor (type 1), putative 1839403 3865312 TA17395 Theileria annulata multiprotein bridging factor (type 1), putative XP_955532.1 1838822 R 5874 CDS TA17390 3865311 complement(join(1839666..1839880,1839940..1840045,1840080..1840135,1840164..1840203,1840252..1840434,1840468..1840545,1840583..1840618)) 3 1 NC_011100.1 note; uncharacterized protein 1840618 3865311 TA17390 Theileria annulata uncharacterized protein XP_955533.1 1839666 R 5874 CDS TA17385 3865310 complement(join(1840809..1841186,1841280..1841389,1841431..1841518)) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.6 - score = 16.14; adp-ribosylation factor (ARF homologue), putative 1841518 3865310 TA17385 Theileria annulata adp-ribosylation factor (ARF homologue), putative XP_955534.1 1840809 R 5874 CDS TA17380 3865309 join(1842160..1842231,1842316..1842452,1842565..1842798,1842832..1842970) 3 1 NC_011100.1 note; Tap-921d01.p1c.C.cand.8 - score = 18.35; SMART pfam:Ribosomal_S7 domain (PF00177) at aa 40-192, E()=1.30e-59; 40S ribosomal protein S5, putative 1842970 3865309 TA17380 Theileria annulata 40S ribosomal protein S5, putative XP_955535.1 1842160 D 5874 CDS TA17375 3865308 complement(1843219..1847235) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.5 - score = 51.54; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA17375 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA17375 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.004) with cleavage site probability 0.950 between residues 20 and 21; polymorphic antigen precursor, putative 1847235 3865308 TA17375 Theileria annulata polymorphic antigen precursor, putative XP_955536.1 1843219 R 5874 CDS TA17370 3865307 complement(1847684..1852228) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.4 - score = 52.29; SMART 10 transmembrane domains at aa 20-42, 55-77, 83-102, 107-129, 149-171, 192-210, 274-296, 972-994, 1004-1026 and 1033-1055; 10 probable transmembrane helices predicted for TA17370 by TMHMM2.0 at aa 20-42, 55-77, 83-102, 107-129, 149-171, 192-210, 274-296, 972-994, 1004-1026 and 1033-1055; uncharacterized protein 1852228 3865307 TA17370 Theileria annulata uncharacterized protein XP_955537.1 1847684 R 5874 CDS TA17365 3865306 complement(1854137..1858717) 3 1 NC_011100.1 note; Tap-921d01.p1c.cand.3 - score = 54.73; SMART 6 transmembrane domains at aa 141-160, 175-197, 286-308, 323-345, 392-414 and 445-467; 2 AAA (SM0382) domains at aa 549-754, E()=6.45e-01; 1265-1443, E()=2.45e-02; pfam:ABC_membrane (PF00664) at aa 848-1136, E()=9.70e-02; 11 probable transmembrane helices predicted for TA17365 by TMHMM2.0 at aa 141-160, 175-197, 286-308, 323-345, 392-414, 445-467, 838-860, 901-923, 977-999, 1003-1025 and 1077-1099; (subtelomeric) ABC-transporter protein family member, putative 1858717 3865306 TA17365 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_955538.1 1854137 R 5874 CDS TA05590 3864664 complement(1860626..1865203) 3 1 NC_011100.1 note; Tap299b01.p1c.cand.1 - score = 55.75; SMART 6 transmembrane domains at aa 140-162, 175-197, 289-311, 318-340, 397-419 and 440-462; 2 AAA (SM0382) domains at aa 549-748, E()=4.68e-01; 1264-1442, E()=5.39e-02; pfam:ABC_membrane (PF00664) at aa 840-1135, E()=3.90e-02; 12 probable transmembrane helices predicted for TA05590 by TMHMM2.0 at aa 140-162, 175-197, 289-311, 318-340, 397-419, 440-462, 579-601, 837-859, 900-922, 976-998, 1002-1021 and 1088-1107; (subtelomeric) ABC-transporter protein family member, putative 1865203 3864664 TA05590 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_955539.1 1860626 R 5874 CDS TA05585 3864663 1866882..1869221 3 1 NC_011100.1 SfiI-subtelomeric fragment related protein family member, putative 1869221 3864663 TA05585 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955540.1 1866882 D 5874 CDS TA05580 3864662 1869491..1870594 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.3 - score = 38.03; Theileria-specific sub-telomeric protein, SVSP family, putative 1870594 3864662 TA05580 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955541.1 1869491 D 5874 CDS TA05575 3864661 1870847..1872247 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.3 - score = 38.03; Theileria-specific sub-telomeric protein, SVSP family 1872247 3864661 TA05575 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_955542.1 1870847 D 5874 CDS TA05570 3864660 1872648..1874264 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.4 - score = 35.14; Signal peptide predicted for TA05570 by SignalP 2.0 HMM (Signal peptide probability 0.738, signal anchor probability 0.077) with cleavage site probability 0.648 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 1874264 3864660 TA05570 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955543.1 1872648 D 5874 CDS TA05565 3864659 1874431..1876143 3 1 NC_011100.1 Tap299b01.p1c.C.cand.4 - score = 35.14; Signal peptide predicted for TA05565 by SignalP 2.0 HMM (Signal peptide probability 0.830, signal anchor probability 0.000) with cleavage site probability 0.810 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 1876143 3864659 TA05565 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955544.1 1874431 D 5874 CDS TA05560 3864658 1876431..1877759 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.5 - score = 31.36; Signal anchor predicted for TA05560 by SignalP 2.0 HMM (Signal peptide probability 0.189, signal anchor probability 0.701) with cleavage site probability 0.120 between residues 24 and 25; Theileria-specific sub-telomeric protein, SVSP family, putative 1877759 3864658 TA05560 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955545.1 1876431 D 5874 CDS TA05555 3864657 1878017..1879282 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.5 - score = 31.36; Signal anchor predicted for TA05555 by SignalP 2.0 HMM (Signal peptide probability 0.189, signal anchor probability 0.701) with cleavage site probability 0.120 between residues 24 and 25; Theileria-specific sub-telomeric protein, SVSP family, putative 1879282 3864657 TA05555 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955546.1 1878017 D 5874 CDS TA05550 3864656 1879553..1880842 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.6 - score = 16.17; Signal peptide predicted for TA05550 by SignalP 2.0 HMM (Signal peptide probability 0.710, signal anchor probability 0.000) with cleavage site probability 0.642 between residues 22 and 23; Theileria-specific sub-telomeric protein, SVSP family, putative 1880842 3864656 TA05550 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955547.1 1879553 D 5874 CDS TA05545 3864655 1881087..1882382 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.7 - score = 33.48; Theileria-specific sub-telomeric protein, SVSP family, putative 1882382 3864655 TA05545 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955548.1 1881087 D 5874 CDS TA05540 3864654 1882537..1883940 3 1 NC_011100.1 note; Tap299b01.p1c.C.cand.8 - score = 11.92; Signal peptide predicted for TA05540 by SignalP 2.0 HMM (Signal peptide probability 0.893, signal anchor probability 0.000) with cleavage site probability 0.809 between residues 18 and 19; Theileria-specific sub-telomeric protein, SVSP family, putative 1883940 3864654 TA05540 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_955549.1 1882537 D 5874 CDS TA05535 3864653 1884323..1885306 3 1 NC_011100.1 Tap299b01.p1c.C.cand.9 - score = 25.85; SfiI-subtelomeric fragment related protein family member, putative 1885306 3864653 TA05535 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955550.1 1884323 D 5874 CDS TA05530 3864691 1886184..1895141 3 1 NC_011100.1 Tap299b01.p1c.C.cand.10 - score = 187.97; Signal peptide predicted for TA05530 by SignalP 2.0 HMM (Signal peptide probability 0.980, signal anchor probability 0.000) with cleavage site probability 0.910 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 1895141 3864691 TA05530 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955551.1 1886184 D 5874 CDS TA05525 3864690 1895206..1895538 3 1 NC_011100.1 Tap299b01.p1c.C.cand.11 - score = 9.90; SfiI-subtelomeric fragment related protein family member, putative 1895538 3864690 TA05525 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_955552.1 1895206 D 5874 CDS TA17105 3862933 complement(2532..5498) 4 1 NC_011098.1 Signal peptide predicted for TA17105 by SignalP 2.0 HMM (Signal peptide probability 0.949, signal anchor probability 0.000) with cleavage site probability 0.746 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 5498 3862933 TA17105 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952703.1 2532 R 5874 CDS TA17110 3862934 complement(6362..8755) 4 1 NC_011098.1 Signal peptide predicted for TA17110 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.000) with cleavage site probability 0.557 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 8755 3862934 TA17110 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952704.1 6362 R 5874 CDS TA17115 3862935 complement(9751..24408) 4 1 NC_011098.1 Telomeric protein, could be part of a family of conserved proteins of variable length; Signal peptide predicted for TA17115 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.000) with cleavage site probability 0.686 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 24408 3862935 TA17115 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952705.1 9751 R 5874 CDS TA17120 3862936 complement(24770..27001) 4 1 NC_011098.1 Related to Theileria parva hypothetical 49.7 kDa protein; Signal peptide predicted for TA17120 by SignalP 2.0 HMM (Signal peptide probability 0.673, signal anchor probability 0.036) with cleavage site probability 0.639 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 27001 3862936 TA17120 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952706.1 24770 R 5874 CDS TA17125 3862937 complement(27601..28653) 4 1 NC_011098.1 Signal peptide predicted for TA17125 by SignalP 2.0 HMM (Signal peptide probability 0.779, signal anchor probability 0.000) with cleavage site probability 0.719 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family, putative 28653 3862937 TA17125 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952707.1 27601 R 5874 CDS TA17130 3862938 complement(28916..30445) 4 1 NC_011098.1 Signal peptide predicted for TA17130 by SignalP 2.0 HMM (Signal peptide probability 0.880, signal anchor probability 0.016) with cleavage site probability 0.813 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family, putative 30445 3862938 TA17130 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952708.1 28916 R 5874 CDS TA17135 3862939 complement(30808..31968) 4 1 NC_011098.1 Theileria-specific sub-telomeric protein, SVSP family, putative 31968 3862939 TA17135 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952709.1 30808 R 5874 CDS TA17140 3862940 complement(32357..33427) 4 1 NC_011098.1 Theileria-specific sub-telomeric protein, SVSP family, putative 33427 3862940 TA17140 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family, putative XP_952710.1 32357 R 5874 CDS TA17145 3862587 complement(34223..36040) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA17145 by TMHMM2.0 at aa 581-603; uncharacterized protein 36040 3862587 TA17145 Theileria annulata uncharacterized protein XP_952711.1 34223 R 5874 CDS TA17150 3862588 37384..41967 4 1 NC_011098.1 11 probable transmembrane helices predicted for TA17150 by TMHMM2.0 at aa 140-162, 167-189, 202-224, 289-311, 318-340, 397-419, 838-860, 907-929, 977-999, 1003-1022 and 1077-1108; ABC transporter, putative 41967 3862588 TA17150 Theileria annulata ABC transporter, putative XP_952712.1 37384 D 5874 CDS TA17160 3862589 43937..48520 4 1 NC_011098.1 10 probable transmembrane helices predicted for TA17160 by TMHMM2.0 at aa 140-162, 175-197, 289-311, 318-340, 397-419, 838-860, 907-929, 960-982, 997-1019 and 1086-1108; ABC transporter, putative 48520 3862589 TA17160 Theileria annulata ABC transporter, putative XP_952713.1 43937 D 5874 CDS TA17170 3862590 50493..55076 4 1 NC_011098.1 10 probable transmembrane helices predicted for TA17170 by TMHMM2.0 at aa 144-166, 179-201, 289-311, 318-340, 397-419, 838-860, 901-923, 978-1000, 1005-1022 and 1086-1108; ABC transporter, putative 55076 3862590 TA17170 Theileria annulata ABC transporter, putative XP_952714.1 50493 D 5874 CDS TA17175 3862591 complement(55368..58655) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA17175 by TMHMM2.0 at aa 7-24; Signal anchor predicted for TA17175 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.882) with cleavage site probability 0.010 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 58655 3862591 TA17175 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952715.1 55368 R 5874 CDS TA17180 3862592 complement(58998..61010) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA17180 by TMHMM2.0 at aa 625-647; Signal peptide predicted for TA17180 by SignalP 2.0 HMM (Signal peptide probability 0.858, signal anchor probability 0.000) with cleavage site probability 0.782 between residues 20 and 21; uncharacterized protein 61010 3862592 TA17180 Theileria annulata uncharacterized protein XP_952716.1 58998 R 5874 CDS TA17185 3862593 complement(61484..62371) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA17185 by TMHMM2.0 at aa 249-271; uncharacterized protein 62371 3862593 TA17185 Theileria annulata uncharacterized protein XP_952717.1 61484 R 5874 CDS TA17190 3862594 complement(join(62430..62554,62682..62810,62893..63078,63108..63152,63179..63269,63298..63312)) 4 1 NC_011098.1 superoxide dismutase 63312 3862594 TA17190 Theileria annulata superoxide dismutase XP_952718.1 62430 R 5874 CDS TA17195 3862595 complement(join(63554..63639,63669..63720,63751..63935,63966..64049,64078..64204,64272..64335,64370..64491,64602..64694,64852..64941)) 4 1 NC_011098.1 uncharacterized protein 64941 3862595 TA17195 Theileria annulata uncharacterized protein XP_952719.1 63554 R 5874 CDS TA17200 3862596 join(64978..65232,65274..65394,65455..65551,65585..65654,65762..65832,65890..66045,66081..66136,66203..66993) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA17200 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA17200 by SignalP 2.0 HMM (Signal peptide probability 0.782, signal anchor probability 0.213) with cleavage site probability 0.707 between residues 22 and 23; trna modification gtpase, putative 66993 3862596 TA17200 Theileria annulata trna modification gtpase, putative XP_952720.1 64978 D 5874 CDS TA17205 3862597 complement(join(67496..69670,69698..70068,70157..70376,70416..70493,70586..70639)) 4 1 NC_011098.1 DNA repair helicase, putative 70639 3862597 TA17205 Theileria annulata DNA repair helicase, putative XP_952721.1 67496 R 5874 CDS TA17210 3862598 71518..73245 4 1 NC_011098.1 Signal peptide predicted for TA17210 by SignalP 2.0 HMM (Signal peptide probability 0.721, signal anchor probability 0.069) with cleavage site probability 0.269 between residues 23 and 24; GPI-Anchor Signal predicted for TA17210 by DGPI v2.04 with cleavage site probability 0.124699995 near 557; uncharacterized protein 73245 3862598 TA17210 Theileria annulata uncharacterized protein XP_952722.1 71518 D 5874 CDS TA17215 3862599 74866..76893 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA17215 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA17215 by SignalP 2.0 HMM (Signal peptide probability 0.638, signal anchor probability 0.186) with cleavage site probability 0.433 between residues 25 and 26; uncharacterized protein 76893 3862599 TA17215 Theileria annulata uncharacterized protein XP_952723.1 74866 D 5874 CDS TA17220 3862600 77324..78931 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA17220 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA17220 by SignalP 2.0 HMM (Signal peptide probability 0.949, signal anchor probability 0.050) with cleavage site probability 0.519 between residues 22 and 23; GPI-Anchor Signal predicted for TA17220 by DGPI v2.04 with cleavage site probability 0.124699995 near 516; uncharacterized protein 78931 3862600 TA17220 Theileria annulata uncharacterized protein XP_952724.1 77324 D 5874 CDS TA17225 3862601 join(79079..79180,79283..79473,79544..79676,79783..80042,80115..80446,80527..80611,80686..80773) 4 1 NC_011098.1 26s protease regulatory subunit, putative 80773 3862601 TA17225 Theileria annulata 26s protease regulatory subunit, putative XP_952725.1 79079 D 5874 CDS TA17230 3862602 join(80857..80967,81006..81094,81236..81350,81432..81571,81601..81889) 4 1 NC_011098.1 60S ribosomal protein l7-a, putative 81889 3862602 TA17230 Theileria annulata 60S ribosomal protein l7-a, putative XP_952726.1 80857 D 5874 CDS TA17235 3862603 complement(join(81998..82248,82298..82561,82640..82792,82878..83136,83199..83542,83729..83825,83863..83901)) 4 1 NC_011098.1 adenylosuccinate synthetase, putative 83901 3862603 TA17235 Theileria annulata adenylosuccinate synthetase, putative XP_952727.1 81998 R 5874 CDS TA17240 3862604 join(84263..84320,84423..84540,84570..84636,84711..84821,84898..85070,85149..85239,85336..85431) 4 1 NC_011098.1 2 probable transmembrane helices predicted for TA17240 by TMHMM2.0 at aa 143-162 and 166-188; zinc-finger protein, putative 85431 3862604 TA17240 Theileria annulata zinc-finger protein, putative XP_952728.1 84263 D 5874 CDS TA17245 3862605 join(85612..85676,85779..85909,85977..86923) 4 1 NC_011098.1 splicing factor, putative 86923 3862605 TA17245 Theileria annulata splicing factor, putative XP_952729.1 85612 D 5874 CDS TA17250 3863350 join(87485..87934,88030..88176) 4 1 NC_011098.1 peroxiredoxin 1, putative 88176 3863350 TA17250 Theileria annulata peroxiredoxin 1, putative XP_952730.1 87485 D 5874 CDS TA17255 3863351 complement(join(88253..88489,88560..88597,88633..88648)) 4 1 NC_011098.1 Similar to N-terminus of nucleostemins; uncharacterized protein 88648 3863351 TA17255 Theileria annulata uncharacterized protein XP_952731.1 88253 R 5874 CDS TA17260 3863352 complement(join(88777..88842,88878..89054,89140..89269,89332..89438,89473..89570,89623..89734)) 4 1 NC_011098.1 uncharacterized protein 89734 3863352 TA17260 Theileria annulata uncharacterized protein XP_952732.1 88777 R 5874 CDS TA17265 3863353 complement(join(89771..89987,90016..90156,90210..90324,90399..90570,90639..91423,91504..92338)) 4 1 NC_011098.1 2 probable transmembrane helices predicted for TA17265 by TMHMM2.0 at aa 13-35 and 712-734; Signal anchor predicted for TA17265 by SignalP 2.0 HMM (Signal peptide probability 0.278, signal anchor probability 0.717) with cleavage site probability 0.170 between residues 34 and 35; uncharacterized protein 92338 3863353 TA17265 Theileria annulata uncharacterized protein XP_952733.1 89771 R 5874 CDS TA17270 3863354 join(93638..93992,94028..94152,94246..94497,94532..94627) 4 1 NC_011098.1 Signal peptide predicted for TA17270 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.503 between residues 17 and 18; uncharacterized protein 94627 3863354 TA17270 Theileria annulata uncharacterized protein XP_952734.1 93638 D 5874 CDS TA17275 3863355 join(94774..94805,94953..95148,95182..95275,95358..95428,95564..95625,95691..95985,96018..96116) 4 1 NC_011098.1 uncharacterized protein 96116 3863355 TA17275 Theileria annulata uncharacterized protein XP_952735.1 94774 D 5874 CDS TA17280 3863356 join(96302..96430,96552..96631,96688..96785,96876..97003,97074..97141,97151..97265) 4 1 NC_011098.1 cell cycle regulator protein, putative 97265 3863356 TA17280 Theileria annulata cell cycle regulator protein, putative XP_952736.1 96302 D 5874 CDS TA17285 3863357 complement(97790..100762) 4 1 NC_011098.1 lysophospholipase-like protein, putative 100762 3863357 TA17285 Theileria annulata lysophospholipase-like protein, putative XP_952737.1 97790 R 5874 CDS TA17290 3863358 complement(101126..101902) 4 1 NC_011098.1 eap30 subunit of ell complex, putative 101902 3863358 TA17290 Theileria annulata eap30 subunit of ell complex, putative XP_952738.1 101126 R 5874 CDS TA17295 3863359 complement(join(101952..102178,102262..102562)) 4 1 NC_011098.1 50s ribosomal protein l16, putative 102562 3863359 TA17295 Theileria annulata 50s ribosomal protein l16, putative XP_952739.1 101952 R 5874 CDS TA17300 3863360 104074..105450 4 1 NC_011098.1 7 probable transmembrane helices predicted for TA17300 by TMHMM2.0 at aa 36-58, 145-167, 182-204, 216-238, 242-264, 284-306 and 360-382; Signal anchor predicted for TA17300 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues -1 and 0; cdp-diacylglycerol synthase, putative 105450 3863360 TA17300 Theileria annulata cdp-diacylglycerol synthase, putative XP_952740.1 104074 D 5874 CDS TA17305 3863361 join(105619..105868,105976..106086,106179..106360) 4 1 NC_011098.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA17305 by TMHMM2.0 at aa 4-26; Signal peptide predicted for TA17305 by SignalP 2.0 HMM (Signal peptide probability 0.964, signal anchor probability 0.032) with cleavage site probability 0.505 between residues 18 and 19; ferredoxin, putative 106360 3863361 TA17305 Theileria annulata ferredoxin, putative XP_952741.1 105619 D 5874 CDS TA17310 3863362 complement(join(106409..106704,106786..106912,107145..107174)) 4 1 NC_011098.1 40s ribosomal protein s15, putative 107174 3863362 TA17310 Theileria annulata 40s ribosomal protein s15, putative XP_952742.1 106409 R 5874 CDS TA17315 3863363 join(107488..107992,108049..108149,108214..108552) 4 1 NC_011098.1 3 probable transmembrane helices predicted for TA17315 by TMHMM2.0 at aa 204-226, 247-269 and 274-296; Signal peptide predicted for TA17315 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.944 between residues 19 and 20; surface protein precursor (TaSP), putative 108552 3863363 TA17315 Theileria annulata surface protein precursor (TaSP), putative XP_952743.1 107488 D 5874 CDS TA17320 3863364 join(108731..108938,108976..109196) 4 1 NC_011098.1 uncharacterized protein 109196 3863364 TA17320 Theileria annulata uncharacterized protein XP_952744.1 108731 D 5874 CDS TA17325 3863365 109767..110369 4 1 NC_011098.1 4 probable transmembrane helices predicted for TA17325 by TMHMM2.0 at aa 25-44, 57-79, 94-116 and 137-159; Signal anchor predicted for TA17325 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.790) with cleavage site probability 0.000 between residues 39 and 40; integral membrane protein, putative 110369 3863365 TA17325 Theileria annulata integral membrane protein, putative XP_952745.1 109767 D 5874 CDS TA17330 3863366 complement(110490..112292) 4 1 NC_011098.1 uncharacterized protein 112292 3863366 TA17330 Theileria annulata uncharacterized protein XP_952746.1 110490 R 5874 CDS TA17335 3863367 complement(join(112480..112679,112712..112920,112958..113733)) 4 1 NC_011098.1 uncharacterized protein 113733 3863367 TA17335 Theileria annulata uncharacterized protein XP_952747.1 112480 R 5874 CDS TA17340 3863368 join(114031..114186,114266..114325,114531..114593) 4 1 NC_011098.1 Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA17340 by TMHMM2.0 at aa 20-42 and 63-85; Signal anchor predicted for TA17340 by SignalP 2.0 HMM (Signal peptide probability 0.013, signal anchor probability 0.860) with cleavage site probability 0.008 between residues 41 and 42; uncharacterized protein 114593 3863368 TA17340 Theileria annulata uncharacterized protein XP_952748.1 114031 D 5874 CDS TA17345 3863369 join(114883..115238,115322..116213,116291..116615,116648..117367,117400..117857) 4 1 NC_011098.1 cell division control protein, putative 117857 3863369 TA17345 Theileria annulata cell division control protein, putative XP_952749.1 114883 D 5874 CDS TA07025 3862606 complement(120669..122045) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.237 - score = 15.26; 9 probable transmembrane helices predicted for TA07025 by TMHMM2.0 at aa 18-40, 95-114, 124-143, 150-172, 187-209, 235-257, 308-327, 348-370 and 380-402; Tpr-related protein family member, putative 122045 3862606 TA07025 Theileria annulata Tpr-related protein family member, putative XP_952750.1 120669 R 5874 CDS TA07030 3862607 complement(join(122519..122887,123046..123175,123261..123380,123433..123547,123603..123681,123773..123904,123952..123969)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.236 - score = 18.45; uncharacterized protein 123969 3862607 TA07030 Theileria annulata uncharacterized protein XP_952751.1 122519 R 5874 CDS TA07035 3862608 complement(join(124925..125085,125191..125284,125325..125432)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.235 - score = 11.60; uncharacterized protein 125432 3862608 TA07035 Theileria annulata uncharacterized protein XP_952752.1 124925 R 5874 CDS TA07040 3862609 join(125779..126075,126132..126290,126423..126483,126519..126592) 4 1 NC_011098.1 Tap349h10.p1c.cand.1 - score = 17.58; uncharacterized protein 126592 3862609 TA07040 Theileria annulata uncharacterized protein XP_952753.1 125779 D 5874 CDS TA07045 3862610 complement(126735..127337) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.234 - score = 14.57; uncharacterized protein 127337 3862610 TA07045 Theileria annulata uncharacterized protein XP_952754.1 126735 R 5874 CDS TA07050 3862611 join(127636..127691,127725..127899,127982..128154,128187..128228,128353..128695,128883..128908,128946..129070,129183..129250) 4 1 NC_011098.1 Tap349h10.p1c.cand.2 - score = 20.19; methionine aminopeptidase 1, putative 129250 3862611 TA07050 Theileria annulata methionine aminopeptidase 1, putative XP_952755.1 127636 D 5874 CDS TA07055 3862612 join(129394..130716,130746..130865) 4 1 NC_011098.1 uncharacterized protein 130865 3862612 TA07055 Theileria annulata uncharacterized protein XP_952756.1 129394 D 5874 CDS TA07060 3862613 complement(join(131196..131869,131939..132692)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.233 - score = 26.28; uncharacterized protein 132692 3862613 TA07060 Theileria annulata uncharacterized protein XP_952757.1 131196 R 5874 CDS TA07065 3862614 join(133212..133656,133688..133875,133928..134261,134344..134648,134759..134842,134946..135198,135279..135421) 4 1 NC_011098.1 Tap349h10.p1c.cand.4 - score = 48.41; chaperonin (HSP60), putative 135421 3862614 TA07065 Theileria annulata chaperonin (HSP60), putative XP_952758.1 133212 D 5874 CDS TA07070 3862615 join(135774..135918,136014..136328,136387..137216) 4 1 NC_011098.1 Tap349h10.p1c.cand.5 - score = 11.41; 6 probable transmembrane helices predicted for TA07070 by TMHMM2.0 at aa 21-43, 63-82, 189-211, 296-318, 325-347 and 362-384; Signal anchor predicted for TA07070 by SignalP 2.0 HMM (Signal peptide probability 0.037, signal anchor probability 0.957) with cleavage site probability 0.019 between residues 42 and 43; uncharacterized protein 137216 3862615 TA07070 Theileria annulata uncharacterized protein XP_952759.1 135774 D 5874 CDS TA07125 3862664 join(137284..137546,137624..137708,137968..138031,138063..138169,138200..138313,138426..138502,138573..138604,138639..138733,138979..139245,139340..139477,139508..139766,139958..140559) 4 1 NC_011098.1 Tap349h10.p1c.cand.6 - score = 32.26; uncharacterized protein 140559 3862664 TA07125 Theileria annulata uncharacterized protein XP_952760.1 137284 D 5874 CDS TA07230 3862522 complement(join(141035..141321,141503..141715,141804..141972)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.232 - score = 10.97; 1 probable transmembrane helix predicted for TA07230 by TMHMM2.0 at aa 181-203; Signal peptide predicted for TA07230 by SignalP 2.0 HMM (Signal peptide probability 0.643, signal anchor probability 0.000) with cleavage site probability 0.548 between residues 17 and 18; uncharacterized protein 141972 3862522 TA07230 Theileria annulata uncharacterized protein XP_952761.1 141035 R 5874 CDS TA07285 3862729 complement(join(142146..142357,142446..142536,142933..143022,143056..143337)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.231 - score = 14.82; uncharacterized protein 143337 3862729 TA07285 Theileria annulata uncharacterized protein XP_952762.1 142146 R 5874 CDS TA07290 3862730 144703..145074 4 1 NC_011098.1 Tap349h10.p1c.cand.7 - score = 10.26; histone H2B (variant 1), putative 145074 3862730 TA07290 Theileria annulata histone H2B (variant 1), putative XP_952763.1 144703 D 5874 CDS TA07395 3863086 complement(145182..148154) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.230 - score = 52.36; uncharacterized protein 148154 3863086 TA07395 Theileria annulata uncharacterized protein XP_952764.1 145182 R 5874 CDS TA07450 3862743 complement(148489..149559) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.229 - score = 23.79; uncharacterized protein 149559 3862743 TA07450 Theileria annulata uncharacterized protein XP_952765.1 148489 R 5874 CDS TA07505 3862754 complement(join(149699..150604,150806..150888,151003..151140,151201..151305,151337..151397,151581..151681,151735..151996,152044..152097)) 4 1 NC_011098.1 Signal peptide predicted for TA07505 by SignalP 2.0 HMM (Signal peptide probability 0.974, signal anchor probability 0.000) with cleavage site probability 0.755 between residues 16 and 17; rDNA dimethyladenosine transferase, putative 152097 3862754 TA07505 Theileria annulata rDNA dimethyladenosine transferase, putative XP_952766.1 149699 R 5874 CDS TA07560 3862765 complement(join(152122..154349,154425..154457,154514..154613)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.226 - score = 45.91; uncharacterized protein 154613 3862765 TA07560 Theileria annulata uncharacterized protein XP_952767.1 152122 R 5874 CDS TA07565 3862766 join(155425..155491,155560..155735) 4 1 NC_011098.1 Tap349h10.p1c.cand.8 - score = 7.93; 1 probable transmembrane helix predicted for TA07565 by TMHMM2.0 at aa 20-42; Signal anchor predicted for TA07565 by SignalP 2.0 HMM (Signal peptide probability 0.008, signal anchor probability 0.984) with cleavage site probability 0.003 between residues 38 and 39; GPI-Anchor Signal predicted for TA07565 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 155735 3862766 TA07565 Theileria annulata uncharacterized protein XP_952768.1 155425 D 5874 CDS TA07670 3862573 complement(join(156643..156823,157181..158304,158610..158845,159083..159769,159915..160017)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.225 - score = 25.48; uncharacterized protein 160017 3862573 TA07670 Theileria annulata uncharacterized protein XP_952769.1 156643 R 5874 CDS TA07725 3862584 complement(join(160478..160641,160734..160896,160974..160985)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.224 - score = 10.18; uncharacterized protein 160985 3862584 TA07725 Theileria annulata uncharacterized protein XP_952770.1 160478 R 5874 CDS TA07780 3862790 complement(161059..164745) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.223 - score = 72.65; uncharacterized protein 164745 3862790 TA07780 Theileria annulata uncharacterized protein XP_952771.1 161059 R 5874 CDS TA07785 3862791 165158..168658 4 1 NC_011098.1 Tap349h10.p1c.cand.10 - score = 56.76; 7 probable transmembrane helices predicted for TA07785 by TMHMM2.0 at aa 36-58, 78-100, 136-158, 173-195, 197-219, 293-315 and 353-375; uncharacterized protein 168658 3862791 TA07785 Theileria annulata uncharacterized protein XP_952772.1 165158 D 5874 CDS TA07890 3862952 complement(168755..170029) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.222 - score = 20.93; uncharacterized protein 170029 3862952 TA07890 Theileria annulata uncharacterized protein XP_952773.1 168755 R 5874 CDS TA07895 3862953 170118..171251 4 1 NC_011098.1 Tap349h10.p1c.cand.11 - score = 27.05; uncharacterized protein 171251 3862953 TA07895 Theileria annulata uncharacterized protein XP_952774.1 170118 D 5874 CDS TA08000 3862974 complement(171335..172336) 4 1 NC_011098.1 uncharacterized protein 172336 3862974 TA08000 Theileria annulata uncharacterized protein XP_952775.1 171335 R 5874 CDS TA08055 3862985 complement(join(173289..175462,175609..176536,176694..176881,177378..177570,177661..177675)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.220 - score = 58.63; DEAD-box family (SNF2-like) helicase, putative 177675 3862985 TA08055 Theileria annulata DEAD-box family (SNF2-like) helicase, putative XP_952776.1 173289 R 5874 CDS TA08060 3862986 join(178352..178555,178751..179018,179482..180129,180449..180731,181096..181211,181324..181485,181643..181827) 4 1 NC_011098.1 Tap349h10.p1c.cand.12 - score = 7.25; T-complex protein 1 (TCP1) chaperonin, putative 181827 3862986 TA08060 Theileria annulata T-complex protein 1 (TCP1) chaperonin, putative XP_952777.1 178352 D 5874 CDS TA08165 3863007 complement(join(182018..182313,182603..182812,183127..183202,183235..183306,183409..183494,183587..183653)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.218 - score = 11.16; uncharacterized protein 183653 3863007 TA08165 Theileria annulata uncharacterized protein XP_952778.1 182018 R 5874 CDS TA08220 3863018 complement(185116..185349) 4 1 NC_011098.1 uncharacterized protein 185349 3863018 TA08220 Theileria annulata uncharacterized protein XP_952779.1 185116 R 5874 CDS TA08275 3863029 complement(join(186288..186638,186733..186782,186812..186935)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.217 - score = 12.72; uncharacterized protein 186935 3863029 TA08275 Theileria annulata uncharacterized protein XP_952780.1 186288 R 5874 CDS TA08280 3863030 join(187093..187164,187197..187289,187432..187480,187733..187884) 4 1 NC_011098.1 Tap349h10.p1c.cand.14 - score = 10.88; 2 probable transmembrane helices predicted for TA08280 by TMHMM2.0 at aa 33-55 and 93-115; uncharacterized protein 187884 3863030 TA08280 Theileria annulata uncharacterized protein XP_952781.1 187093 D 5874 CDS TA08335 3863042 join(188755..188816,188963..189080,189652..189859,190091..190403,190748..190978,191170..191536) 4 1 NC_011098.1 Tap349h10.p1c.cand.14 - score = 10.88; tubulin alpha chain, putative 191536 3863042 TA08335 Theileria annulata tubulin alpha chain, putative XP_952782.1 188755 D 5874 CDS TA08390 3863053 join(192067..192153,192214..192525) 4 1 NC_011098.1 Tap349h10.p1c.cand.15 - score = 8.85; 60S ribosomal protein L32, putative 192525 3863053 TA08390 Theileria annulata 60S ribosomal protein L32, putative XP_952783.1 192067 D 5874 CDS TA08495 3863074 complement(join(192884..193213,193346..194401)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.214 - score = 15.54; uncharacterized protein 194401 3863074 TA08495 Theileria annulata uncharacterized protein XP_952784.1 192884 R 5874 CDS TA08550 3863123 complement(join(194463..194918,195106..196639,197155..197679,197832..198043,198649..198791,198915..199038,199143..199214,199249..199320)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.214 - score = 15.54; adapter protein, putative 199320 3863123 TA08550 Theileria annulata adapter protein, putative XP_952785.1 194463 R 5874 CDS TA08555 3863124 join(199412..199484,199605..199708,199830..199942,199974..200043,200180..200259,200660..200735,200769..200805,201084..201175) 4 1 NC_011098.1 uncharacterized protein 201175 3863124 TA08555 Theileria annulata uncharacterized protein XP_952786.1 199412 D 5874 CDS TA08609 3863154 complement(join(201320..201670,201826..201996)) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA08609 by TMHMM2.0 at aa 9-31; Signal anchor predicted for TA08609 by SignalP 2.0 HMM (Signal peptide probability 0.174, signal anchor probability 0.632) with cleavage site probability 0.067 between residues 33 and 34; signal peptidase, putative 201996 3863154 TA08609 Theileria annulata signal peptidase, putative XP_952787.1 201320 R 5874 CDS TA08610 3863155 join(202138..202312,202655..202836) 4 1 NC_011098.1 prefoldin subunit, putative 202836 3863155 TA08610 Theileria annulata prefoldin subunit, putative XP_952788.1 202138 D 5874 CDS TA08715 3863176 complement(join(203314..203637,203844..204032)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.213 - score = 10.03; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA08715 by SignalP 2.0 HMM (Signal peptide probability 0.927, signal anchor probability 0.070) with cleavage site probability 0.455 between residues 27 and 28; bacterial histone-like protein, putative 204032 3863176 TA08715 Theileria annulata bacterial histone-like protein, putative XP_952789.1 203314 R 5874 CDS TA08720 3863177 204849..205016 4 1 NC_011098.1 Tap349h10.p1c.cand.17 - score = 6.84; uncharacterized protein 205016 3863177 TA08720 Theileria annulata uncharacterized protein XP_952790.1 204849 D 5874 CDS TA08825 3863198 complement(join(206829..207055,207096..207255)) 4 1 NC_011098.1 uncharacterized protein 207255 3863198 TA08825 Theileria annulata uncharacterized protein XP_952791.1 206829 R 5874 CDS TA08830 3863199 207393..207737 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA08830 by TMHMM2.0 at aa 89-111; uncharacterized protein 207737 3863199 TA08830 Theileria annulata uncharacterized protein XP_952792.1 207393 D 5874 CDS TA08885 3863209 join(208437..208617,208856..209748) 4 1 NC_011098.1 Tap349h10.p1c.cand.18 - score = 16.44; uncharacterized protein 209748 3863209 TA08885 Theileria annulata uncharacterized protein XP_952793.1 208437 D 5874 CDS TA08940 3863142 join(210469..210495,210559..211047) 4 1 NC_011098.1 Tap349h10.p1c.cand.19 - score = 11.47; uncharacterized protein 211047 3863142 TA08940 Theileria annulata uncharacterized protein XP_952794.1 210469 D 5874 CDS TA08995 3863153 join(211722..211879,212015..212258,212337..212879) 4 1 NC_011098.1 Tap349h10.p1c.cand.20 - score = 19.78; uncharacterized protein 212879 3863153 TA08995 Theileria annulata uncharacterized protein XP_952795.1 211722 D 5874 CDS TA09050 3863223 213514..214101 4 1 NC_011098.1 Tap349h10.p1c.cand.21 - score = 12.50; Signal peptide predicted for TA09050 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.978 between residues 17 and 18; uncharacterized protein 214101 3863223 TA09050 Theileria annulata uncharacterized protein XP_952796.1 213514 D 5874 CDS TA09140 3863240 complement(214504..215571) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.211 - score = 19.47; 1 probable transmembrane helix predicted for TA09140 by TMHMM2.0 at aa 7-28; Signal peptide predicted for TA09140 by SignalP 2.0 HMM (Signal peptide probability 0.958, signal anchor probability 0.042) with cleavage site probability 0.798 between residues 24 and 25; SfiI-subtelomeric fragment related protein family member, putative 215571 3863240 TA09140 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952797.1 214504 R 5874 CDS TA09145 3863241 complement(join(216090..216551,216957..217526)) 4 1 NC_011098.1 uncharacterized protein 217526 3863241 TA09145 Theileria annulata uncharacterized protein XP_952798.1 216090 R 5874 CDS TA09150 3863242 join(217608..217697,217728..217856,217947..218024,218350..218604) 4 1 NC_011098.1 Tap349h10.p1c.cand.22 - score = 10.54; uncharacterized protein 218604 3863242 TA09150 Theileria annulata uncharacterized protein XP_952799.1 217608 D 5874 CDS TA09155 3863243 complement(join(220111..220466,220950..221645,222011..223196)) 4 1 NC_011098.1 6 probable transmembrane helices predicted for TA09155 by TMHMM2.0 at aa 27-49, 514-536, 549-571, 586-608, 637-659 and 674-696; Signal anchor predicted for TA09155 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.987) with cleavage site probability 0.000 between residues -1 and 0; uncharacterized protein 223196 3863243 TA09155 Theileria annulata uncharacterized protein XP_952800.1 220111 R 5874 CDS TA09160 3863244 complement(join(223311..223466,223600..223636,223742..223887)) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA09160 by TMHMM2.0 at aa 84-106; uncharacterized protein 223887 3863244 TA09160 Theileria annulata uncharacterized protein XP_952801.1 223311 R 5874 CDS TA09165 3863245 complement(join(223963..224432,224649..224914,225155..225570)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.209 - score = 45.88; serine/threonine protein kinase, putative 225570 3863245 TA09165 Theileria annulata serine/threonine protein kinase, putative XP_952802.1 223963 R 5874 CDS TA09170 3863246 complement(226198..228009) 4 1 NC_011098.1 uncharacterized protein 228009 3863246 TA09170 Theileria annulata uncharacterized protein XP_952803.1 226198 R 5874 CDS TA09175 3863247 complement(join(228145..228156,228290..228453,228552..228627)) 4 1 NC_011098.1 uncharacterized protein 228627 3863247 TA09175 Theileria annulata uncharacterized protein XP_952804.1 228145 R 5874 CDS TA09180 3863248 join(229650..229711,229896..230403) 4 1 NC_011098.1 Tap349h10.p1c.cand.23 - score = 11.91; 60S ribosomal L1/L10a protein, putative 230403 3863248 TA09180 Theileria annulata 60S ribosomal L1/L10a protein, putative XP_952805.1 229650 D 5874 CDS TA09185 3863249 join(230621..230683,230805..230919,230985..231103,231141..231464,231846..232068,232100..232240,232292..232386,232438..232529,232559..232691,232802..232940,233033..233061) 4 1 NC_011098.1 Tap349h10.p1c.cand.24 - score = 33.99; structure-specific recognition protein (SSRP) 1, putative 233061 3863249 TA09185 Theileria annulata structure-specific recognition protein (SSRP) 1, putative XP_952806.1 230621 D 5874 CDS TA09190 3863250 join(233208..233281,233313..233398,233437..233714,233784..233848,233879..233942,234063..234110,234153..234214,234337..234427,234479..234781) 4 1 NC_011098.1 leucine carboxylmethyl transferase, putative 234781 3863250 TA09190 Theileria annulata leucine carboxylmethyl transferase, putative XP_952807.1 233208 D 5874 CDS TA09195 3863251 join(234926..234999,235029..235114,235146..235423,235527..235591,235621..235684,235805..235852,235880..235941,235972..236392) 4 1 NC_011098.1 leucine carboxyl methyltransferase, putative 236392 3863251 TA09195 Theileria annulata leucine carboxyl methyltransferase, putative XP_952808.1 234926 D 5874 CDS TA09200 3863252 join(236767..236828,236862..236947,236978..237249,237408..237536,237567..237626,237657..237704,237737..237798,237828..237921,237951..238181) 4 1 NC_011098.1 Tap349h10.p1c.cand.26 - score = 34.60; leucine carboxyl methyltransferase, putative 238181 3863252 TA09200 Theileria annulata leucine carboxyl methyltransferase, putative XP_952809.1 236767 D 5874 CDS TA09205 3863253 join(238393..238457,238493..238886,238952..239295,239327..239371,239402..239463,239494..239603,239643..239903) 4 1 NC_011098.1 Tap349h10.p1c.cand.27 - score = 28.22; 3 probable transmembrane helices predicted for TA09205 by TMHMM2.0 at aa 47-69, 247-269 and 308-330; leucine carboxyl methyltransferase, putative 239903 3863253 TA09205 Theileria annulata leucine carboxyl methyltransferase, putative XP_952810.1 238393 D 5874 CDS TA09210 3863254 complement(join(239945..240627,240701..240946,240978..241116,241148..241182,241214..241323,241364..241551)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.207 - score = 35.78; Pumilio-family RNA-binding protein, putative 241551 3863254 TA09210 Theileria annulata Pumilio-family RNA-binding protein, putative XP_952811.1 239945 R 5874 CDS TA09215 3863255 join(241708..241865,242026..242054,242111..242618,242650..242871,242903..243028,243059..243365) 4 1 NC_011098.1 Tap349h10.p1c.cand.28 - score = 28.53; 2 probable transmembrane helices predicted for TA09215 by TMHMM2.0 at aa 117-136 and 141-163; uncharacterized protein 243365 3863255 TA09215 Theileria annulata uncharacterized protein XP_952812.1 241708 D 5874 CDS TA09220 3863256 complement(join(243398..243520,243602..243891,243923..244379,244455..244944,245019..245143)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.206 - score = 31.62; serine/threonine kinase, putative 245143 3863256 TA09220 Theileria annulata serine/threonine kinase, putative XP_952813.1 243398 R 5874 CDS TA09225 3863257 complement(245224..251265) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.205 - score = 122.95; uncharacterized protein 251265 3863257 TA09225 Theileria annulata uncharacterized protein XP_952814.1 245224 R 5874 CDS TA09230 3863258 complement(join(251662..251809,251882..252370,252402..252527,252576..252663,252695..252802,252849..253011,253044..253157,253193..253274,253310..253472,253502..253611,253641..254082,254221..254425)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.204 - score = 62.40; glucose-inhibited division protein a-like protein, putative 254425 3863258 TA09230 Theileria annulata glucose-inhibited division protein a-like protein, putative XP_952815.1 251662 R 5874 CDS TA09235 3863259 complement(254631..254954) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.203 - score = 8.78; translation initiation factor (SUI1 homologue), putative 254954 3863259 TA09235 Theileria annulata translation initiation factor (SUI1 homologue), putative XP_952816.1 254631 R 5874 CDS TA09240 3863260 join(255914..255976,256049..256135,256175..256401,256494..256656) 4 1 NC_011098.1 Tap349h10.p1c.cand.30 - score = 18.60; endosome sorting protein (SNF7 homologue), putative 256656 3863260 TA09240 Theileria annulata endosome sorting protein (SNF7 homologue), putative XP_952817.1 255914 D 5874 CDS TA09245 3863261 complement(256834..257307) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.202 - score = 9.04; 1 probable transmembrane helix predicted for TA09245 by TMHMM2.0 at aa 137-156; uncharacterized protein 257307 3863261 TA09245 Theileria annulata uncharacterized protein XP_952818.1 256834 R 5874 CDS TA09250 3863262 257769..258899 4 1 NC_011098.1 Tap349h10.p1c.cand.31 - score = 24.06; uncharacterized protein 258899 3863262 TA09250 Theileria annulata uncharacterized protein XP_952819.1 257769 D 5874 CDS TA09255 3863263 complement(259285..259926) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.201 - score = 12.51; 1 probable transmembrane helix predicted for TA09255 by TMHMM2.0 at aa 172-194; Signal peptide predicted for TA09255 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.800 between residues 17 and 18; uncharacterized protein 259926 3863263 TA09255 Theileria annulata uncharacterized protein XP_952820.1 259285 R 5874 CDS TA09260 3863264 complement(260095..260790) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.200 - score = 19.49; uncharacterized protein 260790 3863264 TA09260 Theileria annulata uncharacterized protein XP_952821.1 260095 R 5874 CDS TA09265 3863265 complement(join(260874..262181,262259..262300)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.199 - score = 19.62; Signal peptide predicted for TA09265 by SignalP 2.0 HMM (Signal peptide probability 0.914, signal anchor probability 0.002) with cleavage site probability 0.307 between residues 24 and 25; Tpr-related protein family member, putative 262300 3863265 TA09265 Theileria annulata Tpr-related protein family member, putative XP_952822.1 260874 R 5874 CDS TA09270 3863266 262524..263849 4 1 NC_011098.1 There is overlap with TA09275 gene at the 3' end; uncharacterized protein 263849 3863266 TA09270 Theileria annulata uncharacterized protein XP_952823.1 262524 D 5874 CDS TA09275 3863267 complement(263789..264979) 4 1 NC_011098.1 There is overlap with TA09270 gene at the 3' end; SfiI-subtelomeric fragment related protein family member, putative 264979 3863267 TA09275 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952824.1 263789 R 5874 CDS TA09280 3863268 complement(265065..266660) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.197 - score = 36.04; uncharacterized protein 266660 3863268 TA09280 Theileria annulata uncharacterized protein XP_952825.1 265065 R 5874 CDS TA09285 3863269 complement(join(266715..267060,267212..267359,267394..267610)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.196 - score = 18.55; 1 probable transmembrane helix predicted for TA09285 by TMHMM2.0 at aa 175-194; Tpr-related protein family member, putative 267610 3863269 TA09285 Theileria annulata Tpr-related protein family member, putative XP_952826.1 266715 R 5874 CDS TA09290 3863270 267767..268879 4 1 NC_011098.1 Tap349h10.p1c.cand.35 - score = 25.35; uncharacterized protein 268879 3863270 TA09290 Theileria annulata uncharacterized protein XP_952827.1 267767 D 5874 CDS TA09295 3863271 complement(join(268882..270074,270105..270371,270401..270605,270761..271484,271515..271732)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.195 - score = 51.65; exonuclease 1, putative 271732 3863271 TA09295 Theileria annulata exonuclease 1, putative XP_952828.1 268882 R 5874 CDS TA09300 3863272 join(271886..271936,271969..272235,272269..272987,273019..273155,273188..273546) 4 1 NC_011098.1 Tap349h10.p1c.cand.36 - score = 33.88; uncharacterized protein 273546 3863272 TA09300 Theileria annulata uncharacterized protein XP_952829.1 271886 D 5874 CDS TA09305 3863273 complement(join(273771..273859,273924..274245,274866..275080,275115..275418)) 4 1 NC_011098.1 U5 snRNP-specific subunit, putative 275418 3863273 TA09305 Theileria annulata U5 snRNP-specific subunit, putative XP_952830.1 273771 R 5874 CDS TA09310 3863274 complement(join(275547..275737,275850..276170,276688..276840,277377..277475,277507..277962,278142..278268)) 4 1 NC_011098.1 26S proteasome ATPase subunit, putative 278268 3863274 TA09310 Theileria annulata 26S proteasome ATPase subunit, putative XP_952831.1 275547 R 5874 CDS TA09315 3863275 279206..292942 4 1 NC_011098.1 Tap349h10.p1c.cand.37 - score = 188.68; uncharacterized protein 292942 3863275 TA09315 Theileria annulata uncharacterized protein XP_952832.1 279206 D 5874 CDS TA09320 3863276 complement(join(294336..294703,294871..295017,295052..295108,295191..295218,295253..295657)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.190 - score = 25.65; 3 probable transmembrane helices predicted for TA09320 by TMHMM2.0 at aa 221-240, 253-271 and 276-295; Signal peptide predicted for TA09320 by SignalP 2.0 HMM (Signal peptide probability 0.946, signal anchor probability 0.000) with cleavage site probability 0.686 between residues 13 and 14; uncharacterized protein 295657 3863276 TA09320 Theileria annulata uncharacterized protein XP_952833.1 294336 R 5874 CDS TA09325 3863277 295998..297857 4 1 NC_011098.1 Tap349h10.p1c.cand.38 - score = 25.09; uncharacterized protein 297857 3863277 TA09325 Theileria annulata uncharacterized protein XP_952834.1 295998 D 5874 CDS TA09330 3863278 join(298311..300274,300419..300791) 4 1 NC_011098.1 Tap349h10.p1c.cand.39 - score = 41.75; 6 probable transmembrane helices predicted for TA09330 by TMHMM2.0 at aa 21-40, 50-68, 81-103, 118-140, 175-197 and 747-769; Signal anchor predicted for TA09330 by SignalP 2.0 HMM (Signal peptide probability 0.021, signal anchor probability 0.863) with cleavage site probability 0.007 between residues 38 and 39; uncharacterized protein 300791 3863278 TA09330 Theileria annulata uncharacterized protein XP_952835.1 298311 D 5874 CDS TA09335 3863279 join(301392..302130,302318..302471,302696..302802,302834..302973,303110..303409) 4 1 NC_011098.1 Tap349h10.p1c.cand.40 - score = 24.15; 3 probable transmembrane helices predicted for TA09335 by TMHMM2.0 at aa 151-173, 206-228 and 248-270; uncharacterized protein 303409 3863279 TA09335 Theileria annulata uncharacterized protein XP_952836.1 301392 D 5874 CDS TA09340 3863280 complement(303427..306036) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.189 - score = 42.71; uncharacterized protein 306036 3863280 TA09340 Theileria annulata uncharacterized protein XP_952837.1 303427 R 5874 CDS TA09345 3863281 complement(join(306761..306842,306879..306978,307172..307258,307490..307587,307698..307876)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.188 - score = 15.12; GNAT-family N-acetyltransferase, putative 307876 3863281 TA09345 Theileria annulata GNAT-family N-acetyltransferase, putative XP_952838.1 306761 R 5874 CDS TA09350 3863282 complement(join(308003..308151,308223..308336,308424..308523)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.188 - score = 15.12; 40S ribosomal protein S20, putative 308523 3863282 TA09350 Theileria annulata 40S ribosomal protein S20, putative XP_952839.1 308003 R 5874 CDS TA09355 3863283 join(309153..309287,309719..310207) 4 1 NC_011098.1 uncharacterized protein 310207 3863283 TA09355 Theileria annulata uncharacterized protein XP_952840.1 309153 D 5874 CDS TA09360 3863284 311387..313234 4 1 NC_011098.1 Tap349h10.p1c.cand.41 - score = 43.12; uncharacterized protein 313234 3863284 TA09360 Theileria annulata uncharacterized protein XP_952841.1 311387 D 5874 CDS TA09365 3863285 313974..314570 4 1 NC_011098.1 Tap349h10.p1c.cand.42 - score = 15.82; Signal peptide predicted for TA09365 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.962 between residues 17 and 18; uncharacterized protein 314570 3863285 TA09365 Theileria annulata uncharacterized protein XP_952842.1 313974 D 5874 CDS TA09370 3863286 complement(314960..317254) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.187 - score = 31.09; uncharacterized protein 317254 3863286 TA09370 Theileria annulata uncharacterized protein XP_952843.1 314960 R 5874 CDS TA09375 3863287 complement(join(317755..317922,318185..318263,318404..318628,318861..318944,318978..318993,319325..321034,321416..322943)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.186 - score = 53.81; U5 snRNP subunit, putative 322943 3863287 TA09375 Theileria annulata U5 snRNP subunit, putative XP_952844.1 317755 R 5874 CDS TA09380 3863288 join(323222..323375,323404..323559,323834..324285) 4 1 NC_011098.1 Tap349h10.p1c.cand.43 - score = 8.87; 3 probable transmembrane helices predicted for TA09380 by TMHMM2.0 at aa 7-24, 57-79 and 230-252; uncharacterized protein 324285 3863288 TA09380 Theileria annulata uncharacterized protein XP_952845.1 323222 D 5874 CDS TA09385 3863289 join(324406..324477,324688..324744,324779..324827,324920..325009,325177..325337,325533..325624,325774..325880,326024..326101,326304..326428) 4 1 NC_011098.1 uncharacterized protein 326428 3863289 TA09385 Theileria annulata uncharacterized protein XP_952846.1 324406 D 5874 CDS TA09390 3863290 join(326898..327050,327098..327557,327660..327862) 4 1 NC_011098.1 CLP protease, putative 327862 3863290 TA09390 Theileria annulata CLP protease, putative XP_952847.1 326898 D 5874 CDS TA09395 3863291 complement(join(328339..328622,328923..329160,329226..329309)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.185 - score = 9.77; small heat-shock (HSP) protein, putative 329309 3863291 TA09395 Theileria annulata small heat-shock (HSP) protein, putative XP_952848.1 328339 R 5874 CDS TA07075 3862654 join(329937..330020,330055..330147,330180..330454,330527..330690,330959..331083,331332..331665,331848..332002) 4 1 NC_011098.1 Tap349h10.p1c.cand.45 - score = 12.61; 1 probable transmembrane helix predicted for TA07075 by TMHMM2.0 at aa 141-163; meiotic recombination (DMC1-like) protein, putative 332002 3862654 TA07075 Theileria annulata meiotic recombination (DMC1-like) protein, putative XP_952849.1 329937 D 5874 CDS TA07080 3862655 complement(join(332842..333023,333115..333208,333239..333277)) 4 1 NC_011098.1 uncharacterized protein 333277 3862655 TA07080 Theileria annulata uncharacterized protein XP_952850.1 332842 R 5874 CDS TA07085 3862656 complement(334064..334372) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.183 - score = 8.83; 1 probable transmembrane helix predicted for TA07085 by TMHMM2.0 at aa 12-34; Signal anchor predicted for TA07085 by SignalP 2.0 HMM (Signal peptide probability 0.090, signal anchor probability 0.900) with cleavage site probability 0.051 between residues 25 and 26; uncharacterized protein 334372 3862656 TA07085 Theileria annulata uncharacterized protein XP_952851.1 334064 R 5874 CDS TA07090 3862657 complement(join(335307..335452,335481..335766,336123..336667,336749..336913,336953..337004,337027..337220,337257..337361,337451..338450)) 4 1 NC_011098.1 uncharacterized protein 338450 3862657 TA07090 Theileria annulata uncharacterized protein XP_952852.1 335307 R 5874 CDS TA07095 3862658 join(338952..339269,339798..340220,340516..340680,340902..341175,341500..341768,342077..342210,342280..342443,342702..342799,342839..343144,343415..343496,343565..343963,344097..344321,344473..344799,345006..345274) 4 1 NC_011098.1 Signal peptide predicted for TA07095 by SignalP 2.0 HMM (Signal peptide probability 0.932, signal anchor probability 0.000) with cleavage site probability 0.890 between residues 15 and 16; ClpB protein, putative 345274 3862658 TA07095 Theileria annulata ClpB protein, putative XP_952853.1 338952 D 5874 CDS TA07100 3862659 complement(345834..347111) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.179 - score = 77.85; uncharacterized protein 347111 3862659 TA07100 Theileria annulata uncharacterized protein XP_952854.1 345834 R 5874 CDS TA07105 3862660 complement(347501..350209) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.179 - score = 77.85; uncharacterized protein 350209 3862660 TA07105 Theileria annulata uncharacterized protein XP_952855.1 347501 R 5874 CDS TA07110 3862661 complement(join(351994..352190,352245..352326,352357..352452)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.178 - score = 12.78; uncharacterized protein 352452 3862661 TA07110 Theileria annulata uncharacterized protein XP_952856.1 351994 R 5874 CDS TA07115 3862662 352802..353416 4 1 NC_011098.1 Tap349h10.p1c.cand.49 - score = 9.28; 40S ribosomal S12-related protein, putative 353416 3862662 TA07115 Theileria annulata 40S ribosomal S12-related protein, putative XP_952857.1 352802 D 5874 CDS TA07120 3862663 join(354355..355219,355385..355935) 4 1 NC_011098.1 Tap349h10.p1c.cand.50 - score = 10.45; 11 probable transmembrane helices predicted for TA07120 by TMHMM2.0 at aa 31-48, 72-94, 101-123, 138-160, 173-195, 215-237, 271-293, 298-320, 350-372, 385-407 and 439-461; transporter, putative 355935 3862663 TA07120 Theileria annulata transporter, putative XP_952858.1 354355 D 5874 CDS TA07130 3862665 complement(356318..356911) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.177 - score = 14.24; Signal peptide predicted for TA07130 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.974 between residues 17 and 18; uncharacterized protein 356911 3862665 TA07130 Theileria annulata uncharacterized protein XP_952859.1 356318 R 5874 CDS TA07135 3862666 complement(join(357490..357912,357944..358585)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.176 - score = 37.20; RAN binding protein 1, putative 358585 3862666 TA07135 Theileria annulata RAN binding protein 1, putative XP_952860.1 357490 R 5874 CDS TA07140 3862667 complement(join(360166..361043,361527..362474,362682..364547,364937..365267)) 4 1 NC_011098.1 splicing factor 3b subunit, putative 365267 3862667 TA07140 Theileria annulata splicing factor 3b subunit, putative XP_952861.1 360166 R 5874 CDS TA07145 3862668 join(365769..365907,366409..366524,366593..366908,367138..367624,368064..368225,368236..368569,368631..368715,368838..368961,369511..369774,369934..370153) 4 1 NC_011098.1 Tap349h10.p1c.cand.51 - score = 11.10; 2 probable transmembrane helices predicted for TA07145 by TMHMM2.0 at aa 6-28 and 386-408; Signal peptide predicted for TA07145 by SignalP 2.0 HMM (Signal peptide probability 0.726, signal anchor probability 0.252) with cleavage site probability 0.428 between residues 21 and 22; uncharacterized protein 370153 3862668 TA07145 Theileria annulata uncharacterized protein XP_952862.1 365769 D 5874 CDS TA07146 3862669 complement(join(371066..373194,373489..373798)) 4 1 NC_011098.1 uncharacterized protein 373798 3862669 TA07146 Theileria annulata uncharacterized protein XP_952863.1 371066 R 5874 CDS TA07150 3862670 complement(374854..380148) 4 1 NC_011098.1 RNA-binding protein, putative 380148 3862670 TA07150 Theileria annulata RNA-binding protein, putative XP_952864.1 374854 R 5874 CDS TA07155 3862671 complement(380219..380980) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.171 - score = 21.21; uncharacterized protein 380980 3862671 TA07155 Theileria annulata uncharacterized protein XP_952865.1 380219 R 5874 CDS TA07160 3862672 join(381139..381544,381616..382130,382160..382396) 4 1 NC_011098.1 Tap349h10.p1c.cand.52 - score = 35.26; CTP-phosphoethanolamine cytidylyltransferase, putative 382396 3862672 TA07160 Theileria annulata CTP-phosphoethanolamine cytidylyltransferase, putative XP_952866.1 381139 D 5874 CDS TA07162 3862508 join(383759..383783,383809..384425) 4 1 NC_011098.1 Existence of Exon I not sure, possible pseudogene; uncharacterized protein 384425 3862508 TA07162 Theileria annulata uncharacterized protein XP_952867.1 383759 D 5874 CDS TA07165 3862509 385188..385871 4 1 NC_011098.1 Tap349h10.p1c.cand.53 - score = 17.20; uncharacterized protein 385871 3862509 TA07165 Theileria annulata uncharacterized protein XP_952868.1 385188 D 5874 CDS TA07170 3862510 join(386502..386730,386760..387007,387037..387240,387271..387627) 4 1 NC_011098.1 filament assembling protein, putative 387627 3862510 TA07170 Theileria annulata filament assembling protein, putative XP_952869.1 386502 D 5874 CDS TA07175 3862511 join(387695..387740,387776..387892,387928..388062,388106..388881) 4 1 NC_011098.1 gene model may need to be refined (small overlap with TA07180 at the 3' end); uncharacterized protein 388881 3862511 TA07175 Theileria annulata uncharacterized protein XP_952870.1 387695 D 5874 CDS TA07180 3862512 complement(join(388871..389062,389096..389143,389174..389764)) 4 1 NC_011098.1 gene model may need to be refined (small overlap with TA07175 at the 3' end); nucleosome/chromatin assembly factor, putative 389764 3862512 TA07180 Theileria annulata nucleosome/chromatin assembly factor, putative XP_952871.1 388871 R 5874 CDS TA07185 3862513 complement(join(389904..390976,391011..391110,391168..391264,391318..391396,391426..391578,391610..391663,391694..392201)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.170 - score = 66.29; uncharacterized protein 392201 3862513 TA07185 Theileria annulata uncharacterized protein XP_952872.1 389904 R 5874 CDS TA07190 3862514 join(392641..392798,392839..392948,392984..393210,393240..393301,393391..393454,393485..393637) 4 1 NC_011098.1 Tap349h10.p1c.cand.57 - score = 25.39; uncharacterized protein 393637 3862514 TA07190 Theileria annulata uncharacterized protein XP_952873.1 392641 D 5874 CDS TA07195 3862515 393723..394466 4 1 NC_011098.1 Tap349h10.p1c.cand.58 - score = 11.08; uncharacterized protein 394466 3862515 TA07195 Theileria annulata uncharacterized protein XP_952874.1 393723 D 5874 CDS TA07200 3862516 complement(join(394701..395065,395095..395202,395232..395502)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.169 - score = 17.49; 7 probable transmembrane helices predicted for TA07200 by TMHMM2.0 at aa 21-43, 53-75, 87-106, 116-138, 145-164, 169-191 and 204-226; Signal anchor predicted for TA07200 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.889) with cleavage site probability 0.000 between residues 43 and 44; uncharacterized protein 395502 3862516 TA07200 Theileria annulata uncharacterized protein XP_952875.1 394701 R 5874 CDS TA07205 3862517 complement(join(396644..396994,397088..397390)) 4 1 NC_011098.1 4 probable transmembrane helices predicted for TA07205 by TMHMM2.0 at aa 53-75, 107-126, 133-155 and 160-182; Signal anchor predicted for TA07205 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.631) with cleavage site probability 0.002 between residues 43 and 44; GPI-Anchor Signal predicted for TA07205 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 397390 3862517 TA07205 Theileria annulata uncharacterized protein XP_952876.1 396644 R 5874 CDS TA07210 3862518 complement(join(397726..398036,398067..398177,398226..398472)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.168 - score = 13.75; 7 probable transmembrane helices predicted for TA07210 by TMHMM2.0 at aa 15-34, 41-63, 78-100, 107-129, 139-156, 161-183 and 198-215; Signal anchor predicted for TA07210 by SignalP 2.0 HMM (Signal peptide probability 0.117, signal anchor probability 0.624) with cleavage site probability 0.039 between residues 36 and 37; GPI-Anchor Signal predicted for TA07210 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 398472 3862518 TA07210 Theileria annulata uncharacterized protein XP_952877.1 397726 R 5874 CDS TA07215 3862519 complement(join(398727..398849,398894..399105,399231..400584)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.167 - score = 35.09; uncharacterized protein 400584 3862519 TA07215 Theileria annulata uncharacterized protein XP_952878.1 398727 R 5874 CDS TA07220 3862520 400862..402736 4 1 NC_011098.1 Tap349h10.p1c.cand.59 - score = 39.05; uncharacterized protein 402736 3862520 TA07220 Theileria annulata uncharacterized protein XP_952879.1 400862 D 5874 CDS TA07225 3862521 complement(join(402806..403185,403249..404339,404396..404705,404740..405022)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.166 - score = 36.07; uncharacterized protein 405022 3862521 TA07225 Theileria annulata uncharacterized protein XP_952880.1 402806 R 5874 CDS TA07235 3862523 complement(405222..405812) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.165 - score = 19.34; uncharacterized protein 405812 3862523 TA07235 Theileria annulata uncharacterized protein XP_952881.1 405222 R 5874 CDS TA07240 3862524 complement(join(406961..407821,407862..407926,407996..408241,408310..408400,408432..408785,408843..408953,408985..409044,409077..409765,409840..409983,410018..410335,410367..410612,410653..410948,410992..411569,411628..411711,411759..411922,411957..412028,412060..412238,412270..412507,412569..412659)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.164 - score = 119.42; uncharacterized protein 412659 3862524 TA07240 Theileria annulata uncharacterized protein XP_952882.1 406961 R 5874 CDS TA07245 3862525 join(413274..413379,413412..413544,413582..413960,413998..414118,414142..414224,414256..414645) 4 1 NC_011098.1 Tap349h10.p1c.cand.60 - score = 33.31; uncharacterized protein 414645 3862525 TA07245 Theileria annulata uncharacterized protein XP_952883.1 413274 D 5874 CDS TA07250 3862526 join(415313..419039,419103..419343,419406..419850,419909..420064) 4 1 NC_011098.1 Tap349h10.p1c.cand.61 - score = 85.24; uncharacterized protein 420064 3862526 TA07250 Theileria annulata uncharacterized protein XP_952884.1 415313 D 5874 CDS TA07255 3862723 complement(join(420215..421839,421901..422777)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.163 - score = 66.69; gamma adaptin, putative 422777 3862723 TA07255 Theileria annulata gamma adaptin, putative XP_952885.1 420215 R 5874 CDS TA07260 3862724 423278..427264 4 1 NC_011098.1 Tap349h10.p1c.cand.62 - score = 71.17; uncharacterized protein 427264 3862724 TA07260 Theileria annulata uncharacterized protein XP_952886.1 423278 D 5874 CDS TA07265 3862725 complement(join(427396..427547,427600..427698,427757..427868,427901..427953,428022..428147,428221..428373,428442..428537,428616..428661)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.162 - score = 19.37; uncharacterized protein 428661 3862725 TA07265 Theileria annulata uncharacterized protein XP_952887.1 427396 R 5874 CDS TA07270 3862726 join(429141..429260,429489..432535,432704..432788,432820..432907,432960..433234) 4 1 NC_011098.1 Tap349h10.p1c.cand.63 - score = 74.25; 16 probable transmembrane helices predicted for TA07270 by TMHMM2.0 at aa 10-32, 53-75, 85-107, 137-159, 174-196, 235-257, 277-299, 312-334, 349-371, 376-398, 402-421, 426-448, 923-945, 952-974, 1021-1043 and 1145-1164; Signal peptide predicted for TA07270 by SignalP 2.0 HMM (Signal peptide probability 0.960, signal anchor probability 0.036) with cleavage site probability 0.687 between residues 21 and 22; proton translocating inorganic pyrophosphatase, putative 433234 3862726 TA07270 Theileria annulata proton translocating inorganic pyrophosphatase, putative XP_952888.1 429141 D 5874 CDS TA07275 3862727 complement(join(433435..433754,433858..433885)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.161 - score = 10.26; 1 probable transmembrane helix predicted for TA07275 by TMHMM2.0 at aa 25-47; thioredoxin, putative 433885 3862727 TA07275 Theileria annulata thioredoxin, putative XP_952889.1 433435 R 5874 CDS TA07280 3862728 join(435174..436077,436196..437563,437647..438254) 4 1 NC_011098.1 Tap349h10.p1c.cand.64 - score = 52.99; importin beta/transportin, putative 438254 3862728 TA07280 Theileria annulata importin beta/transportin, putative XP_952890.1 435174 D 5874 CDS TA07295 3862731 complement(join(438406..439551,439640..439903,439969..440448,440540..440695)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.160 - score = 41.55; acetyl-coenzyme A synthetase, putative 440695 3862731 TA07295 Theileria annulata acetyl-coenzyme A synthetase, putative XP_952891.1 438406 R 5874 CDS TA07300 3862732 join(442216..442413,442631..442799,442831..443417) 4 1 NC_011098.1 Tap349h10.p1c.cand.65 - score = 31.55; uncharacterized protein 443417 3862732 TA07300 Theileria annulata uncharacterized protein XP_952892.1 442216 D 5874 CDS TA07305 3862733 complement(443508..444026) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.159 - score = 19.86; uncharacterized protein 444026 3862733 TA07305 Theileria annulata uncharacterized protein XP_952893.1 443508 R 5874 CDS TA07310 3862734 complement(444153..445469) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.158 - score = 35.79; lipid-binding/transfer protein, putative 445469 3862734 TA07310 Theileria annulata lipid-binding/transfer protein, putative XP_952894.1 444153 R 5874 CDS TA07315 3862735 join(446040..446179,446273..447911) 4 1 NC_011098.1 Tap349h10.p1c.cand.67 - score = 33.07; uncharacterized protein 447911 3862735 TA07315 Theileria annulata uncharacterized protein XP_952895.1 446040 D 5874 CDS TA07320 3862736 complement(join(447952..448259,448327..448445,448489..448520)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.157 - score = 11.20; (Mago nashi homologue) sex determination protein, putative 448520 3862736 TA07320 Theileria annulata (Mago nashi homologue) sex determination protein, putative XP_952896.1 447952 R 5874 CDS TA07325 3862737 complement(448688..451006) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.156 - score = 38.27; uncharacterized protein 451006 3862737 TA07325 Theileria annulata uncharacterized protein XP_952897.1 448688 R 5874 CDS TA07330 3862738 join(451349..454505,454548..456445) 4 1 NC_011098.1 uncharacterized protein 456445 3862738 TA07330 Theileria annulata uncharacterized protein XP_952898.1 451349 D 5874 CDS TA07335 3862739 456557..456955 4 1 NC_011098.1 Tap349h10.p1c.cand.68 - score = 118.75; bromodomain containing protein, putative 456955 3862739 TA07335 Theileria annulata bromodomain containing protein, putative XP_952899.1 456557 D 5874 CDS TA07340 3862740 join(457240..457524,457622..457952,457984..458117,458170..458441,458472..458521,458587..459096,459155..459651,459715..460431) 4 1 NC_011098.1 Tap349h10.p1c.cand.69 - score = 61.62; 7 probable transmembrane helices predicted for TA07340 by TMHMM2.0 at aa 65-83, 104-126, 130-152, 173-195, 244-266, 705-724 and 739-761; uncharacterized protein 460431 3862740 TA07340 Theileria annulata uncharacterized protein XP_952900.1 457240 D 5874 CDS TA07345 3862741 join(460715..461413,461452..461785,461815..461942,462007..462085,462118..462233) 4 1 NC_011098.1 Tap349h10.p1c.cand.70 - score = 39.56; DNA damage response protein (pescadillo homologue), putative 462233 3862741 TA07345 Theileria annulata DNA damage response protein (pescadillo homologue), putative XP_952901.1 460715 D 5874 CDS TA07350 3862742 join(462484..462622,462666..462958,463060..463342,463434..463828) 4 1 NC_011098.1 Tap349h10.p1c.cand.71 - score = 26.69; 1 probable transmembrane helix predicted for TA07350 by TMHMM2.0 at aa 278-300; DNA repair (Rad51 homologue) protein, putative 463828 3862742 TA07350 Theileria annulata DNA repair (Rad51 homologue) protein, putative XP_952902.1 462484 D 5874 CDS TA07355 3863078 complement(join(463902..464959,464992..465439,465502..465810,465882..466218,466289..466747,466799..466948,467004..467435,467492..467604,467638..467717,467749..467908)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.155 - score = 73.00; 6 probable transmembrane helices predicted for TA07355 by TMHMM2.0 at aa 32-51, 99-121, 136-158, 211-233, 582-604 and 611-633; uncharacterized protein 467908 3863078 TA07355 Theileria annulata uncharacterized protein XP_952903.1 463902 R 5874 CDS TA07360 3863079 join(468355..469102,469157..470007,470037..470122,470161..470224,470256..471149) 4 1 NC_011098.1 Tap349h10.p1c.cand.72 - score = 50.32; uncharacterized protein 471149 3863079 TA07360 Theileria annulata uncharacterized protein XP_952904.1 468355 D 5874 CDS TA07365 3863080 471329..472336 4 1 NC_011098.1 Tap349h10.p1c.cand.73 - score = 29.74; uncharacterized protein 472336 3863080 TA07365 Theileria annulata uncharacterized protein XP_952905.1 471329 D 5874 CDS TA07370 3863081 472628..473680 4 1 NC_011098.1 Tap349h10.p1c.cand.74 - score = 18.68; Spm1 homologue, putative 473680 3863081 TA07370 Theileria annulata Spm1 homologue, putative XP_952906.1 472628 D 5874 CDS TA07375 3863082 complement(join(473752..473851,473882..473994,474023..474125,474167..474311,474344..474431,474594..474737)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.154 - score = 33.13; uncharacterized protein 474737 3863082 TA07375 Theileria annulata uncharacterized protein XP_952907.1 473752 R 5874 CDS TA07380 3863083 join(474892..475161,475251..475382,475491..475587,475620..475702,475746..475868,475963..476154) 4 1 NC_011098.1 Tap349h10.p1c.cand.75 - score = 26.94; 26S proteasome (regulatory) subunit, putative 476154 3863083 TA07380 Theileria annulata 26S proteasome (regulatory) subunit, putative XP_952908.1 474892 D 5874 CDS TA07385 3863084 complement(join(476223..476464,476571..476648,476686..476793,476826..476892)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.153 - score = 20.36; uncharacterized protein 476892 3863084 TA07385 Theileria annulata uncharacterized protein XP_952909.1 476223 R 5874 CDS TA07390 3863085 complement(join(477059..477357,477391..477439)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.152 - score = 12.85; 60S ribosomal protein L36, putative 477439 3863085 TA07390 Theileria annulata 60S ribosomal protein L36, putative XP_952910.1 477059 R 5874 CDS TA07400 3863087 complement(join(477784..477929,478097..478202,478356..478529,478679..478834,478912..479124,479176..479335,479415..479620)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.151 - score = 24.88; uncharacterized protein 479620 3863087 TA07400 Theileria annulata uncharacterized protein XP_952911.1 477784 R 5874 CDS TA07405 3863088 join(480145..480249,480295..480889,480957..481189) 4 1 NC_011098.1 Tap349h10.p1c.cand.76 - score = 21.05; 1 probable transmembrane helix predicted for TA07405 by TMHMM2.0 at aa 7-29; uncharacterized protein 481189 3863088 TA07405 Theileria annulata uncharacterized protein XP_952912.1 480145 D 5874 CDS TA07410 3863089 complement(join(481335..481497,481592..484926)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.150 - score = 93.48; uncharacterized protein 484926 3863089 TA07410 Theileria annulata uncharacterized protein XP_952913.1 481335 R 5874 CDS TA07415 3863090 join(486228..486409,486443..486540,486572..487185,487253..487453) 4 1 NC_011098.1 Tap349h10.p1c.cand.77 - score = 26.65; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA07415 by SignalP 2.0 HMM (Signal peptide probability 0.991, signal anchor probability 0.000) with cleavage site probability 0.722 between residues 18 and 19; peptide chain release factor, putative 487453 3863090 TA07415 Theileria annulata peptide chain release factor, putative XP_952914.1 486228 D 5874 CDS TA07420 3863091 complement(join(487565..487711,487743..487824,487890..488127,488157..488319)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.149 - score = 24.86; p36 (Toxoplasma gondii) homologue, putative 488319 3863091 TA07420 Theileria annulata p36 (Toxoplasma gondii) homologue, putative XP_952915.1 487565 R 5874 CDS TA07425 3863092 complement(join(489175..489444,489555..490137,490210..490578,490638..490732)) 4 1 NC_011098.1 uncharacterized protein 490732 3863092 TA07425 Theileria annulata uncharacterized protein XP_952916.1 489175 R 5874 CDS TA07430 3863093 491747..494563 4 1 NC_011098.1 Tap349h10.p1c.cand.78 - score = 53.82; uncharacterized protein 494563 3863093 TA07430 Theileria annulata uncharacterized protein XP_952917.1 491747 D 5874 CDS TA07435 3863094 complement(494745..496334) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.147 - score = 26.38; SfiI-subtelomeric fragment related protein family member, putative 496334 3863094 TA07435 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952918.1 494745 R 5874 CDS TA07440 3863095 complement(join(496513..496632,496733..496891,496978..497194,497275..497503,497643..497818,497879..497956,497988..498092,498153..498241,498300..498461,498494..498659,498727..498800,498842..498874)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.146 - score = 31.12; uncharacterized protein 498874 3863095 TA07440 Theileria annulata uncharacterized protein XP_952919.1 496513 R 5874 CDS TA07445 3863096 join(499269..500306,500454..500518,500585..500661,500737..500877,500962..501093,501151..501458) 4 1 NC_011098.1 Tap349h10.p1c.cand.79 - score = 30.89; GTPase activator, putative 501458 3863096 TA07445 Theileria annulata GTPase activator, putative XP_952920.1 499269 D 5874 CDS TA07455 3862744 join(501738..501983,502088..502152,502188..502272) 4 1 NC_011098.1 Tap349h10.p1c.cand.80 - score = 8.98; 1 probable transmembrane helix predicted for TA07455 by TMHMM2.0 at aa 2-21; Signal peptide predicted for TA07455 by SignalP 2.0 HMM (Signal peptide probability 0.761, signal anchor probability 0.235) with cleavage site probability 0.699 between residues 21 and 22; uncharacterized protein 502272 3862744 TA07455 Theileria annulata uncharacterized protein XP_952921.1 501738 D 5874 CDS TA07460 3862745 join(502445..503408,503473..503742,503807..504189,504297..504584) 4 1 NC_011098.1 Tap349h10.p1c.cand.81 - score = 34.61; vesicle transport (Sec1 family) protein, putative 504584 3862745 TA07460 Theileria annulata vesicle transport (Sec1 family) protein, putative XP_952922.1 502445 D 5874 CDS TA07465 3862746 complement(join(504755..504931,504974..505147,505236..505906,506026..506362)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.145 - score = 26.88; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA07465 by SignalP 2.0 HMM (Signal peptide probability 0.993, signal anchor probability 0.000) with cleavage site probability 0.450 between residues 17 and 18; translation elongation factor, putative 506362 3862746 TA07465 Theileria annulata translation elongation factor, putative XP_952923.1 504755 R 5874 CDS TA07470 3862747 join(506602..506621,506666..506712,506805..506991,507045..507555) 4 1 NC_011098.1 Tap349h10.p1c.cand.82 - score = 13.56; 2 probable transmembrane helices predicted for TA07470 by TMHMM2.0 at aa 13-32 and 177-194; Signal peptide predicted for TA07470 by SignalP 2.0 HMM (Signal peptide probability 0.788, signal anchor probability 0.185) with cleavage site probability 0.566 between residues 27 and 28; uncharacterized protein 507555 3862747 TA07470 Theileria annulata uncharacterized protein XP_952924.1 506602 D 5874 CDS TA07475 3862748 complement(507626..509578) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.144 - score = 38.00; SfiI-subtelomeric fragment related protein family member, putative 509578 3862748 TA07475 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_952925.1 507626 R 5874 CDS TA07480 3862749 complement(509924..511396) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.143 - score = 21.25; 8 probable transmembrane helices predicted for TA07480 by TMHMM2.0 at aa 21-40, 113-135, 147-169, 211-233, 240-262, 370-392, 399-421 and 464-486; Signal peptide predicted for TA07480 by SignalP 2.0 HMM (Signal peptide probability 0.981, signal anchor probability 0.002) with cleavage site probability 0.547 between residues 37 and 38; GPI-Anchor Signal predicted for TA07480 by DGPI v2.04 with cleavage site probability 0.103199996 near 452; uncharacterized protein 511396 3862749 TA07480 Theileria annulata uncharacterized protein XP_952926.1 509924 R 5874 CDS TA07485 3862750 join(512301..512387,512417..512508,512538..512599,512672..512778,512864..512937,513020..513197) 4 1 NC_011098.1 Tap349h10.p1c.cand.83 - score = 16.77; uncharacterized protein 513197 3862750 TA07485 Theileria annulata uncharacterized protein XP_952927.1 512301 D 5874 CDS TA07490 3862751 complement(join(513327..513470,513538..514998)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.142 - score = 60.16; uncharacterized protein 514998 3862751 TA07490 Theileria annulata uncharacterized protein XP_952928.1 513327 R 5874 CDS TA07495 3862752 complement(join(515064..516291,516442..516530)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.142 - score = 60.16; uncharacterized protein 516530 3862752 TA07495 Theileria annulata uncharacterized protein XP_952929.1 515064 R 5874 CDS TA07500 3862753 complement(join(518510..518641,518672..518770,518890..518988,519018..521054,521148..521273)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.141 - score = 54.72; uncharacterized protein 521273 3862753 TA07500 Theileria annulata uncharacterized protein XP_952930.1 518510 R 5874 CDS TA07510 3862755 complement(join(522173..522215,522245..522322,522398..522616,522717..522799,522829..522923,522956..523048,523127..523211)) 4 1 NC_011098.1 uncharacterized protein 523211 3862755 TA07510 Theileria annulata uncharacterized protein XP_952931.1 522173 R 5874 CDS TA07515 3862756 join(524461..524515,524545..524605,524701..527077) 4 1 NC_011098.1 pumilio-family RNA-binding protein, putative 527077 3862756 TA07515 Theileria annulata pumilio-family RNA-binding protein, putative XP_952932.1 524461 D 5874 CDS TA07520 3862757 complement(join(527851..529011,529103..529180,529286..529664,529710..529867)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.138 - score = 32.08; uncharacterized protein 529867 3862757 TA07520 Theileria annulata uncharacterized protein XP_952933.1 527851 R 5874 CDS TA07525 3862758 join(530238..530435,530470..530595,530664..531060,531090..531256,531297..531476,531505..531593,531626..531742,531803..531922,531971..532175,532235..532536,532609..532796,532825..533009) 4 1 NC_011098.1 Tap349h10.p1c.cand.88 - score = 79.13; DEAD-family helicase, putative 533009 3862758 TA07525 Theileria annulata DEAD-family helicase, putative XP_952934.1 530238 D 5874 CDS TA07530 3862759 533602..534009 4 1 NC_011098.1 Tap349h10.p1c.cand.89 - score = 13.62; 40S ribosomal protein S24, putative 534009 3862759 TA07530 Theileria annulata 40S ribosomal protein S24, putative XP_952935.1 533602 D 5874 CDS TA07535 3862760 complement(join(534059..534194,534251..534393,534424..534627,534664..534740,534773..534936,534998..535191,535225..535287)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.137 - score = 28.19; 7 probable transmembrane helices predicted for TA07535 by TMHMM2.0 at aa 39-61, 92-114, 119-136, 149-171, 175-197, 225-247 and 276-295; Signal anchor predicted for TA07535 by SignalP 2.0 HMM (Signal peptide probability 0.275, signal anchor probability 0.660) with cleavage site probability 0.102 between residues 63 and 64; prenyltransferase (protoheme farnesyltransferase), putative 535287 3862760 TA07535 Theileria annulata prenyltransferase (protoheme farnesyltransferase), putative XP_952936.1 534059 R 5874 CDS TA07540 3862761 join(536058..536091,536130..536381,536474..537379,537581..537696,537733..537880,537952..538049,538125..538262,538350..538474,538516..538807,538899..539015) 4 1 NC_011098.1 Tap349h10.p1c.cand.90 - score = 68.84; eukaryotic translation initiation factor, putative 539015 3862761 TA07540 Theileria annulata eukaryotic translation initiation factor, putative XP_952937.1 536058 D 5874 CDS TA07545 3862762 complement(join(539060..539130,539160..539268,539328..539864,539903..539959)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.136 - score = 19.61; SMART DCX (SM00537) at aa 158-240, E()=2.43e-04; CT (SM00441) at aa 16-83, E()=3.22e+03; SPRY (SM00449) at aa 96-200, E()=2.87e+03; overlapping pfam:Pox_A3C (PF05288) at aa 154-219, E()=9.90e+00; overlapping pfam:DCX (PF03607) at aa 179-239, E()=1.60e-01; KOW (SM00739) at aa 193-213, E()=3.88e+03; uncharacterized protein 539959 3862762 TA07545 Theileria annulata uncharacterized protein XP_952938.1 539060 R 5874 CDS TA07550 3862763 complement(540305..541930) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.135 - score = 42.78; SMART pfam:TYA (PF01021) at aa 1-427, E()=5.20e+00; pfam:Cornifin (PF02389) at aa 27-213, E()=2.40e+00; S_TK_X (SM00133) at aa 90-143, E()=2.24e+03; RICIN (SM00458) at aa 187-345, E()=3.20e03; NEAT (SM00725) at aa 209-352, E()=8.72e+05; ZM (SM00735) at aa 263-286, E()=6.50e+03; CRF (SM00039) at aa 328-364, E()=2.53e+03; PRY (SM00589) at aa 329-373, E()=5.59e+03; SOCS (SM00253) at aa 329-369, E()=2.42e+03; uncharacterized protein 541930 3862763 TA07550 Theileria annulata uncharacterized protein XP_952939.1 540305 R 5874 CDS TA07555 3862764 complement(join(542934..543697,543727..543796)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.134 - score = 21.66; SMART pfam:zf-C3HC4 (PF00097) at aa 43-79, E()=6.00e-02; pfam:Mnd1 (PF03962) at aa 12-144, E()=7.80e+00; ArfGap (SM00105) at aa 26-130, E()=6.59e+02; LIM (SM00132) at aa 29-66, E()=1.96e+03; PHD (SM00249) at aa 30-67, E()=1.03e+03; RINGv (SM00744) at aa 42-67, E()=3.55e+03; RING (SM00184) at aa 43-181, E()=2.85e+00; HMG (SM00398) at aa 50-112, E()=2.96e+03; TRASH (SM00746) at aa 62-93, E()=1.16e+06; pfam:Troponin (PF00992) at aa 73-209, E()=5.90e+00; pfam:DUF466 (PF04328) at aa 99-154, E()=7.40e+00; uncharacterized protein 543796 3862764 TA07555 Theileria annulata uncharacterized protein XP_952940.1 542934 R 5874 CDS TA07570 3862767 join(544117..544266,544360..544487,544517..544581,544615..544722,544752..544999,545062..545295,545326..545443,545490..545995) 4 1 NC_011098.1 Tap349h10.p1c.cand.92 - score = 45.09; SMART 2 BBOX (SM00336) at aa 252-309, E()=6.05e-04; 314-359, E()=4.54e-01; RPEL (SM00707) at aa 15-41, E()=2.70e+03; EH (SM00027) at aa 56-138, E()=3.62e+03; NGF (SM00140) at aa 140-195, E()=6.12e+02; HintC (SM00305) at aa 185-231, E()=1.08e+03; JAS_MPN (SM00232) at aa 185-329, E()=5.5e+02; DNaseIc (SM00476) at aa 237-430, E()=5.09e+03; overlapping pfam:FYVE (PF01363) at aa 245-296, E()=5.20e-01; FYVE (SM00064) at aa 246-296, E()=8.19e+00; AWS (SM00570) at aa 252-305, E()=2.86e+03; overlapping pfam:zf-B_box (PF00643) at aa 252-309, E()=4.90e-03; FES (SM00525) at aa 253-272, E()=6.90e+03; PHD (SM00249) at aa 256-335, E()=5.35e+02; DM6 (SM00689) at aa 256-368, E()=1.09e+03; overlapping pfam:PHD (PF00628) at aa 256-293, E()=2.00e+00; uncharacterized protein 545995 3862767 TA07570 Theileria annulata uncharacterized protein XP_952941.1 544117 D 5874 CDS TA07575 3862768 complement(546109..547173) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.133 - score = 24.23; SMART 6 transmembrane domains at aa 37-59, 119-141, 148-165, 169-191, 212-234 and 244-286; 6 probable transmembrane helices predicted for TA07575 by TMHMM2.0 at aa 37-59, 119-141, 148-165, 169-191, 212-234 and 244-266; uncharacterized protein 547173 3862768 TA07575 Theileria annulata uncharacterized protein XP_952942.1 546109 R 5874 CDS TA07580 3862769 complement(547914..548168) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.132 - score = 9.16; SMART pfam:BolA (PF01722) at aa 1-77, E()=6.70e-24; uncharacterized protein 548168 3862769 TA07580 Theileria annulata uncharacterized protein XP_952943.1 547914 R 5874 CDS TA07585 3862770 complement(join(548490..549118,549157..555937,555971..556237,556269..556874,556906..557220)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.130 - score = 192.95; SMART 1 transmembrane domain at aa 34-51; 1 probable transmembrane helix predicted for TA07585 by TMHMM2.0 at aa 34-51; Signal anchor predicted for TA07585 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.747) with cleavage site probability 0.000 between residues 24 and 25; uncharacterized protein 557220 3862770 TA07585 Theileria annulata uncharacterized protein XP_952944.1 548490 R 5874 CDS TA07590 3862771 complement(join(558238..558343,558374..558551,558591..558762)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.129 - score = 21.36; SMART pfam:Ribosomal_S11 (PF00411) at aa 29-147, E()=1.70e-67; pfam:Ribosomal_L18p (PF00861) at aa 2.30e+00; PGRP (SM00701) at aa 20-104, E()=4.69e+03; 40S ribosomal protein S11, putative 558762 3862771 TA07590 Theileria annulata 40S ribosomal protein S11, putative XP_952945.1 558238 R 5874 CDS TA07595 3862772 join(559420..560277,560308..560443,560477..560559,560588..560688,560718..560790,560819..561010) 4 1 NC_011098.1 gene model may need to be refined (small strand overlap with TA07600 at the 3' end); SMART 1 transmembrane domain at aa 7-29; pfam: PseudoU_synth_1 (PF01416) at aa 348-457, E()=5.20e-07; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA07595 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA07595 by SignalP 2.0 HMM (Signal peptide probability 0.646, signal anchor probability 0.009) with cleavage site probability 0.430 between residues 22 and 23; tRNA-pseudouridine synthase I, putative 561010 3862772 TA07595 Theileria annulata tRNA-pseudouridine synthase I, putative XP_952946.1 559420 D 5874 CDS TA07600 3862773 complement(561007..561831) 4 1 NC_011098.1 gene model may need to be refined (small strand overlap with TA07595 at the 3' end); uncharacterized protein 561831 3862773 TA07600 Theileria annulata uncharacterized protein XP_952947.1 561007 R 5874 CDS TA07605 3862774 complement(join(561910..562041,562070..562162,562194..562352,562387..562458,562491..562769,562806..563001,563032..563663,563749..564042)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.126 - score = 107.93; SMART pfam:GTP_EFTU (PF00009) at aa 107-270, E()=2.80e-06; pfam:ras (PF00071) at aa 112-253, E()=6.40e-02; pfam:DUF164 (PF02591) at aa 365-577, E()=5.20e-02; GTPase-activity protein, or translation initiation factor IF-2 mitochondrial precursor, putative 564042 3862774 TA07605 Theileria annulata GTPase-activity protein, or translation initiation factor IF-2 mitochondrial precursor, putative XP_952948.1 561910 R 5874 CDS TA07610 3862775 complement(join(564081..564242,564273..565640)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.126 - score = 107.93; SMART 1 transmembrane domain at aa 13-35; 1 probable transmembrane helix predicted for TA07610 by TMHMM2.0 at aa 13-35; uncharacterized protein 565640 3862775 TA07610 Theileria annulata uncharacterized protein XP_952949.1 564081 R 5874 CDS TA07615 3862776 complement(join(565894..566078,566112..566200,566405..566496,566526..566594,566626..566772,566804..566861,566898..567004,567037..567109,567151..567344)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.125 - score = 45.35; uncharacterized protein 567344 3862776 TA07615 Theileria annulata uncharacterized protein XP_952950.1 565894 R 5874 CDS TA07620 3862777 complement(join(567501..567961,567997..568033)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.125 - score = 45.35; SMART RL11 (SM00649) at aa 13-144, E()=2.45e-47; 60S ribosomal protein L12, putative 568033 3862777 TA07620 Theileria annulata 60S ribosomal protein L12, putative XP_952951.1 567501 R 5874 CDS TA07625 3862778 complement(568123..568326) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.125 - score = 45.35; uncharacterized protein 568326 3862778 TA07625 Theileria annulata uncharacterized protein XP_952952.1 568123 R 5874 CDS TA07630 3862779 complement(join(568405..568668,568700..568822,568856..568954,569105..569254,569290..569420,569452..569605)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.124 - score = 28.48; SMART 3 transmembrane domains at 20-42, 139-161 and 190-212; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA07630 by TMHMM2.0 at aa 20-42, 139-161 and 190-212; Signal anchor predicted for TA07630 by SignalP 2.0 HMM (Signal peptide probability 0.019, signal anchor probability 0.933) with cleavage site probability 0.009 between residues 37 and 38; uncharacterized protein 569605 3862779 TA07630 Theileria annulata uncharacterized protein XP_952953.1 568405 R 5874 CDS TA07635 3862780 complement(join(570101..570445,570476..570575,570607..570670,570700..570934,570967..571131,571162..571244,571277..571682)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.123 - score = 123.37; uncharacterized protein 571682 3862780 TA07635 Theileria annulata uncharacterized protein XP_952954.1 570101 R 5874 CDS TA07639 3862781 complement(join(571820..571957,571998..572210,572326..572448,572481..572638,572672..572936,572971..573036,573070..573186,573217..573259,573387..573575,573609..573673,573697..573699)) 4 1 NC_011098.1 uncharacterized protein 573699 3862781 TA07639 Theileria annulata uncharacterized protein XP_952955.1 571820 R 5874 CDS TA07640 3862567 complement(join(573891..574016,574052..574147,574180..574262,574296..574357,574389..574501,574536..574628,574658..574723,574755..575588)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.123 - score = 123.37; SMART 8 WD40 (SM00320) at aa 553-591, E()=6.42e-01; 594-633, E()=8.47e-12; 635-681, E()=6.73e-06; 684-724, E()=1.11e-06; 727-808, E()=5.50e+01; 813-852, E()=6.32e-11; 855-894, E()=2.95e-11; 897-929, E()=8.52e+01; uncharacterized protein 575588 3862567 TA07640 Theileria annulata uncharacterized protein XP_952956.1 573891 R 5874 CDS TA07645 3862568 join(575996..576309,576341..579620) 4 1 NC_011098.1 Tap349h10.p1c.cand.95 - score = 69.76; uncharacterized protein 579620 3862568 TA07645 Theileria annulata uncharacterized protein XP_952957.1 575996 D 5874 CDS TA07650 3862569 join(580336..580477,580588..581009,581081..581512) 4 1 NC_011098.1 Tap349h10.p1c.cand.96 - score = 28.97; SMART 7 WD40 (SM00320) at aa 13-55, E()=6.90e-01; 65-104, E()=6.84e-07; 107-146, E()=8.60e-13; 148-191, E()=1.76e-09; 194-233, E()=1.20e-11; 236-273, E()=1.29e-02; and 276-321, E()=6.89e-03; guanine-nucleotide binding protein, putative 581512 3862569 TA07650 Theileria annulata guanine-nucleotide binding protein, putative XP_952958.1 580336 D 5874 CDS TA07655 3862570 join(581636..581770,581811..581941,581970..582069,582100..582234,582264..582419,582452..582538,582568..582750) 4 1 NC_011098.1 Tap349h10.p1c.cand.97 - score = 61.54; SMART 10 LRR_SD22 (SM00365) domains, at aa 21-40, E()=5.54e+02; 41-62, E()=4.30e-05; 63-84, E()=3.55e-06; 85-106, E()=2.01e-05; 107-128, E()=3.11e-02; 129-150, E()=4.48e+01; 151-177, E()=6.03e+02; 196-217, E()=4.06e+02; 219-240, E()=2.71e-02; 241-259, E()=4.01e+01; LRR_TYP (SM00369) at aa 172-195, E()=1.01e+02; protein phosphatase regulator subunit, putative 582750 3862570 TA07655 Theileria annulata protein phosphatase regulator subunit, putative XP_952959.1 581636 D 5874 CDS TA07660 3862571 join(582887..583194,583287..583458,583488..583760,583814..584041,584084..584299) 4 1 NC_011098.1 Tap349h10.p1c.cand.97 - score = 61.54; uncharacterized protein 584299 3862571 TA07660 Theileria annulata uncharacterized protein XP_952960.1 582887 D 5874 CDS TA07665 3862572 complement(584388..585119) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.122 - score = 16.38; uncharacterized protein 585119 3862572 TA07665 Theileria annulata uncharacterized protein XP_952961.1 584388 R 5874 CDS TA07675 3862574 join(586221..586482,586514..586602,586664..586804,586948..587055,587138..587278,587339..587595,587674..587770) 4 1 NC_011098.1 Tap349h10.p1c.cand.98 - score = 20.01; SMART PINT (SM00088) at aa 251-344, E()=1.10e-10; 26S proteasome subunit, putative 587770 3862574 TA07675 Theileria annulata 26S proteasome subunit, putative XP_952962.1 586221 D 5874 CDS TA07680 3862575 complement(join(587818..587939,587989..588129,588183..589011)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.121 - score = 28.83; SMART pfam:Peptidase_M22 (PF00814) at aa 13-296, E()=1.50e-68; pfam:TPK_catalytic (PF04263) at aa 220-313, E()=5.00e-02; glycoprotein endopeptidase, putative 589011 3862575 TA07680 Theileria annulata glycoprotein endopeptidase, putative XP_952963.1 587818 R 5874 CDS TA07685 3862576 complement(589218..590396) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.120 - score = 27.98; uncharacterized protein 590396 3862576 TA07685 Theileria annulata uncharacterized protein XP_952964.1 589218 R 5874 CDS TA07690 3862577 join(590702..590749,590857..591591,591650..592187,592257..593278) 4 1 NC_011098.1 Tap349h10.p1c.cand.100 - score = 60.93; SMART DYNc (SM00053) at aa 6-253, E()=2.74e-90; GED (SM00302) at aa 550-641, E()=4.38e-13; dynamin, putative 593278 3862577 TA07690 Theileria annulata dynamin, putative XP_952965.1 590702 D 5874 CDS TA07695 3862578 594309..597080 4 1 NC_011098.1 Tap349h10.p1c.cand.102 - score = 60.83; SMART pfam:Adaptin_N (PF01602) at aa 19-558, E()=3.80e-34; coatamer, gamma subunit, putative 597080 3862578 TA07695 Theileria annulata coatamer, gamma subunit, putative XP_952966.1 594309 D 5874 CDS TA07700 3862579 join(597324..597444,597538..597600,597633..597721) 4 1 NC_011098.1 Tap349h10.p1c.cand.103 - score = 15.31; SMART pfam:DSS1_SEM1 (PF05160) at aa 13-83, E()=9.40e-02; uncharacterized protein 597721 3862579 TA07700 Theileria annulata uncharacterized protein XP_952967.1 597324 D 5874 CDS TA07705 3862580 complement(597762..598322) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.119 - score = 28.39; uncharacterized protein 598322 3862580 TA07705 Theileria annulata uncharacterized protein XP_952968.1 597762 R 5874 CDS TA07710 3862581 complement(join(598439..598597,598669..598733,598793..598910,598976..599065,599113..599220,599286..599441)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.119 - score = 28.39; uncharacterized protein 599441 3862581 TA07710 Theileria annulata uncharacterized protein XP_952969.1 598439 R 5874 CDS TA07715 3862582 600112..601521 4 1 NC_011098.1 Tap349h10.p1c.cand.104 - score = 15.03; SMART pfam:zf-DHHC (PF01529) at aa 135-199, E()=9.70e-31; 3 transmembrane domains at aa 38-60, 75-97 and 229-251; 4 probable transmembrane helices predicted for TA07715 by TMHMM2.0 at aa 38-60, 75-97, 192-214 and 229-251; uncharacterized protein 601521 3862582 TA07715 Theileria annulata uncharacterized protein XP_952970.1 600112 D 5874 CDS TA07720 3862583 601769..603265 4 1 NC_011098.1 Tap349h10.p1c.cand.105 - score = 15.74; SMART 10 transmembrane domains at aa 13-35, 126-148, 160-182, 187-209, 222-244, 275-297, 310-329, 358-380, 399-421 and 431-453; 10 probable transmembrane helices predicted for TA07720 by TMHMM2.0 at aa 13-35, 126-148, 160-182, 187-209, 222-244, 275-297, 310-329, 358-380, 399-421 and 431-453; Tpr-related protein family member, putative 603265 3862583 TA07720 Theileria annulata Tpr-related protein family member, putative XP_952971.1 601769 D 5874 CDS TA07730 3862585 603409..605280 4 1 NC_011098.1 Tap349h10.p1c.cand.106 - score = 33.64; SMART 9 transmembrane domains at aa 22-44, 238-260, 270-292, 333-355, 375-397, 410-432, 474-496, 517-539, and 549-551; 9 probable transmembrane helices predicted for TA07730 by TMHMM2.0 at aa 22-44, 238-260, 270-292, 333-355, 375-397, 410-432, 474-496, 517-539 and 549-571; Tpr-related protein family member, putative 605280 3862585 TA07730 Theileria annulata Tpr-related protein family member, putative XP_952972.1 603409 D 5874 CDS TA07735 3862586 complement(join(606476..606732,606797..606955,607045..607849)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.118 - score = 20.84; SMART pfam:Cdc73 (PF05179) at aa 170-406, E()=8.20e-08; uncharacterized protein 607849 3862586 TA07735 Theileria annulata uncharacterized protein XP_952973.1 606476 R 5874 CDS TA07740 3862782 join(608077..608209,608346..608452,608513..608625,608674..608776) 4 1 NC_011098.1 Tap349h10.p1c.cand.107 - score = 11.72; SMART pfam:NUDIX (PF00293) at aa 8-141, E()=2.20e-17; Bis-(5' nucleosyl)-tetraphosphatase, putative 608776 3862782 TA07740 Theileria annulata Bis-(5' nucleosyl)-tetraphosphatase, putative XP_952974.1 608077 D 5874 CDS TA07745 3862783 complement(join(608817..608954,609017..609134,609152..609234)) 4 1 NC_011098.1 U6 snRNP protein Lsm2, putative 609234 3862783 TA07745 Theileria annulata U6 snRNP protein Lsm2, putative XP_952975.1 608817 R 5874 CDS TA07750 3862784 join(609950..610013,610212..612581,612643..612723,612796..612865,612949..613075) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA07750 by TMHMM2.0 at aa 838-860; cell surface/extracellular protein, putative 613075 3862784 TA07750 Theileria annulata cell surface/extracellular protein, putative XP_952976.1 609950 D 5874 CDS TA07755 3862785 join(613612..614182,614501..615508,615623..615730,615795..615928) 4 1 NC_011098.1 thrombospondin-related protein, putative 615928 3862785 TA07755 Theileria annulata thrombospondin-related protein, putative XP_952977.1 613612 D 5874 CDS TA07760 3862786 join(615976..616314,616356..616592,616656..617045) 4 1 NC_011098.1 Tap349h10.p1c.cand.110 - score = 17.61; uncharacterized protein 617045 3862786 TA07760 Theileria annulata uncharacterized protein XP_952978.1 615976 D 5874 CDS TA07765 3862787 complement(617134..619386) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.116 - score = 29.43; SMART 9 transmembrane domains at aa 46-69, 90-112, 122-144, 151-173, 188-210, 272-294, 309-328, 637-659 and 664-683; 9 probable transmembrane helices predicted for TA07765 by TMHMM2.0 at aa 47-69, 90-112, 122-144, 151-173, 188-210, 272-294, 309-328, 637-659 and 664-683; Tpr-related protein family member, putative 619386 3862787 TA07765 Theileria annulata Tpr-related protein family member, putative XP_952979.1 617134 R 5874 CDS TA07770 3862788 complement(619556..621646) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.115 - score = 35.85; SMART 10 transmembrane domains at aa 21-43, 336-358, 370-392, 396-418, 439-461, 486-508, 521-539, 578-600, 620-642 and 652-674; pfam:PspA_IM30 (PF04012) at aa 73-299, E()=2.10e-02; 10 probable transmembrane helices predicted for TA07770 by TMHMM2.0 at aa 21-43, 336-358, 370-392, 396-418, 439-461, 486-508, 521-539, 578-600, 620-642 and 652-674; Tpr-related protein family member, putative 621646 3862788 TA07770 Theileria annulata Tpr-related protein family member, putative XP_952980.1 619556 R 5874 CDS TA07775 3862789 complement(join(621817..621915,621984..622201,622256..622391)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.114 - score = 138.27; uncharacterized protein 622391 3862789 TA07775 Theileria annulata uncharacterized protein XP_952981.1 621817 R 5874 CDS TA07790 3862792 complement(join(622715..623064,623135..623288,623376..623438)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.114 - score = 138.27; SMART pfam:Ribosomal_S4 (PF00163) at aa 4-106, E()=1.60e-31; S4 (SM00363) at aa 107-171, E()=9.82e-05; 40S ribosomal protein S9, putative 623438 3862792 TA07790 Theileria annulata 40S ribosomal protein S9, putative XP_952982.1 622715 R 5874 CDS TA07795 3862793 complement(join(623694..623813,623957..625303)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.114 - score = 138.27; uncharacterized protein 625303 3862793 TA07795 Theileria annulata uncharacterized protein XP_952983.1 623694 R 5874 CDS TA07800 3862794 complement(join(625548..625937,626001..626244,626357..626707,626776..626980,627061..627322,627384..627600,627669..627941,628006..628223,628280..628471,628555..628731,628762..628902,628973..629124,629169..629257,629394..629563)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.114 - score = 138.27; SMART pfan:Peptidase_M24 (PF00557) at aa 228-430, E()=3.50e-03; transcription modulator, putative 629563 3862794 TA07800 Theileria annulata transcription modulator, putative XP_952984.1 625548 R 5874 CDS TA07805 3862795 join(630154..630471,630599..630779,630869..631179) 4 1 NC_011098.1 Tap349h10.p1c.cand.112 - score = 18.62; SMART 2 RRM (SM00360) at aa 8-78, E()=2.56e-21; 104-173, E()=1.26e-02; splicing factor, putative 631179 3862795 TA07805 Theileria annulata splicing factor, putative XP_952985.1 630154 D 5874 CDS TA07810 3862796 631355..632071 4 1 NC_011098.1 Tap349h10.p1c.cand.113 - score = 19.59; uncharacterized protein 632071 3862796 TA07810 Theileria annulata uncharacterized protein XP_952986.1 631355 D 5874 CDS TA07815 3862797 complement(join(632204..632329,632362..632468,632546..632687,632764..632833,632925..633032,633068..633114)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.113 - score = 18.51; SMART pfam:proteasome (PF00227) at aa 12-199, E()=6.70e-38; proteasome subunit, putative 633114 3862797 TA07815 Theileria annulata proteasome subunit, putative XP_952987.1 632204 R 5874 CDS TA07820 3862798 complement(633399..634880) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.112 - score = 38.09; SMART CYCLIN (SM00385) at aa 47-126, E()=6.55e-02; cyclin-related protein, putative 634880 3862798 TA07820 Theileria annulata cyclin-related protein, putative XP_952988.1 633399 R 5874 CDS TA07825 3862799 join(636741..636813,636896..637054,637143..637222,637293..637481) 4 1 NC_011098.1 Tap349h10.p1c.cand.114 - score = 7.46; SMART 2 domains pfam:ATP-synt_C (PF00137) at aa 12-77, E()=2.00e-10; 90-155, E()=4.80e-16; 4 probable transmembrane helices predicted for TA07825 by TMHMM2.0 at aa 10-32, 53-75, 90-112 and 132-154; vacuolar H+-ATPase subunit, putative 637481 3862799 TA07825 Theileria annulata vacuolar H+-ATPase subunit, putative XP_952989.1 636741 D 5874 CDS TA07830 3862800 complement(join(637557..638687,638754..638906,638971..639357)) 4 1 NC_011098.1 SMART RRM (SM00360) at aa 109-182, E()=6.37e-08; PWI (SM00311) at aa 476-552, E()=1.01e-03; uncharacterized protein 639357 3862800 TA07830 Theileria annulata uncharacterized protein XP_952990.1 637557 R 5874 CDS TA07835 3862941 join(640379..640491,640557..640821) 4 1 NC_011098.1 Tap349h10.p1c.cand.115 - score = 9.46; SMART pfam:UPF0099 (PF01981) at aa 27-110, E()=1.00e-01; uncharacterized protein 640821 3862941 TA07835 Theileria annulata uncharacterized protein XP_952991.1 640379 D 5874 CDS TA07840 3862942 complement(641086..641496) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.109 - score = 13.20; SMART H3 (SM00428) at aa 34-136, E()=1.07e-71; histone H3, putative 641496 3862942 TA07840 Theileria annulata histone H3, putative XP_952992.1 641086 R 5874 CDS TA07845 3862943 642630..643013 4 1 NC_011098.1 Tap349h10.p1c.cand.116 - score = 14.82; SMART H2A (SM00414) at aa 4-124, E()=7.37e-75; histone H2A, putative 643013 3862943 TA07845 Theileria annulata histone H2A, putative XP_952993.1 642630 D 5874 CDS TA07850 3862944 join(643569..643696,643744..644179,644265..644989,645023..645426,645530..645709,645773..645968,646046..646250,646328..646467,646500..646734) 4 1 NC_011098.1 Tap349h10.p1c.cand.117 - score = 60.80; SMART 3 TPR domains (SM00028) at aa 139-172, E()=8.87e+00; 384-417, E()=4.80e+01; 797-830, E()=1.53e+00; transcription factor, putative 646734 3862944 TA07850 Theileria annulata transcription factor, putative XP_952994.1 643569 D 5874 CDS TA07855 3862945 join(647000..647407,647445..647526,647583..647704,647747..647870,647939..648112,648144..648189,648246..648372) 4 1 NC_011098.1 SMART pfam:Ribosomal_L19 (PF01245) at aa 122-221, E()=3.50e-07; uncharacterized protein 648372 3862945 TA07855 Theileria annulata uncharacterized protein XP_952995.1 647000 D 5874 CDS TA07860 3862946 complement(join(648406..648544,648615..648838,648884..649118,649188..649578,649636..649810)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.108 - score = 38.14; SMART ZnF_C2HC (SM00343) at aa 93-109, E()=5.37e+00; splicing factor (Hs SLU7 homologue), putative 649810 3862946 TA07860 Theileria annulata splicing factor (Hs SLU7 homologue), putative XP_952996.1 648406 R 5874 CDS TA07865 3862947 join(650571..650667,650699..650826,650922..651184,651238..651393,651443..651659) 4 1 NC_011098.1 Tap349h10.p1c.cand.119 - score = 14.40; SMART 3 transmembrane domains at aa 22-44, 56-78 and 188-210; pfam:zf-DHHC (PF01529) at aa 91-155, E()=1.10e-32; 4 probable transmembrane helices predicted for TA07865 by TMHMM2.0 at aa 22-44, 56-78, 145-167 and 188-210; Signal anchor predicted for TA07865 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.942) with cleavage site probability 0.001 between residues 19 and 20; uncharacterized protein 651659 3862947 TA07865 Theileria annulata uncharacterized protein XP_952997.1 650571 D 5874 CDS TA07870 3862948 complement(join(652132..652448,652520..653135,653220..653295,653364..653672,653742..656167)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.105 - score = 89.12; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA07870 by SignalP 2.0 HMM (Signal peptide probability 0.997, signal anchor probability 0.000) with cleavage site probability 0.979 between residues 16 and 17; uncharacterized protein 656167 3862948 TA07870 Theileria annulata uncharacterized protein XP_952998.1 652132 R 5874 CDS TA07875 3862949 join(656620..656745,656775..656862,656904..657067,657138..657575,657635..657835,657876..658003,658037..658224,658253..658380) 4 1 NC_011098.1 Tap349h10.p1c.cand.120 - score = 33.83; SMART 2 PLDc domains (SM00155) at aa 162-189, E()=7.88e-04; 357-384, E()=1.02e-02; cardiolipin synthetase, putative 658380 3862949 TA07875 Theileria annulata cardiolipin synthetase, putative XP_952999.1 656620 D 5874 CDS TA07880 3862950 complement(join(658470..658907,658937..658981,659009..659170,659473..660864)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.104 - score = 90.49; uncharacterized protein 660864 3862950 TA07880 Theileria annulata uncharacterized protein XP_953000.1 658470 R 5874 CDS TA07885 3862951 complement(join(660975..661132,661331..661379,661475..661795,661858..662001,662033..662109,662139..662271,662325..662660,662700..662845,662879..663005)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.104 - score = 90.49; coatomer delta subunit, putative 663005 3862951 TA07885 Theileria annulata coatomer delta subunit, putative XP_953001.1 660975 R 5874 CDS TA07900 3862954 join(663340..663511,663546..663785,663817..664042,664086..664359,664390..664584,664617..664767,664798..666600,666676..666965,666995..667300) 4 1 NC_011098.1 Tap349h10.p1c.cand.121 - score = 125.29; SMART pfam:RNA_pol_Rpb2_1 (PF04563) at aa 10-274, E()=4.40e-15; pfam:RNA_pol_Rpb2_3 (PF04565) at aa 492-561, 3.30e-27; pfam:RNA_pol_Rpb2_6 (PF00562) at aa 746-1137, E()=3.10e-112; pfam:RNA_pol_Rpb2_7 (PF04560) at aa 1139-1209, E()=1.90e-12; 1 probable transmembrane helix predicted for TA07900 by TMHMM2.0 at aa 236-258; DNA-directed RNA polymerase I, second largest subunit, putative 667300 3862954 TA07900 Theileria annulata DNA-directed RNA polymerase I, second largest subunit, putative XP_953002.1 663340 D 5874 CDS TA07905 3862955 join(667450..667669,667699..667898,667951..668159,668189..668825,668858..669006,669035..669164) 4 1 NC_011098.1 Tap349h10.p1c.cand.121 - score = 125.29; SMART MACPF (SM00457) at aa 215-400, E()=1.11e-01; MAC/perforin, putative 669164 3862955 TA07905 Theileria annulata MAC/perforin, putative XP_953003.1 667450 D 5874 CDS TA07910 3862956 complement(join(669641..669780,669810..669888,669918..670006,670036..670138,670185..670302,670344..670483,670513..670931,670974..671176,671206..671441,671471..671755)) 4 1 NC_011098.1 SMART MACPF (SM00457) at aa 179-364, E()=9.11-01; MAC/perforin, putative 671755 3862956 TA07910 Theileria annulata MAC/perforin, putative XP_953004.1 669641 R 5874 CDS TA07915 3862957 join(672308..672386,672425..672639,672669..672761,672800..672876,672906..673012,673042..673175) 4 1 NC_011098.1 Tap349h10.p1c.cand.122 - score = 24.17; uncharacterized protein 673175 3862957 TA07915 Theileria annulata uncharacterized protein XP_953005.1 672308 D 5874 CDS TA07920 3862958 complement(join(673211..674631,674664..675033)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.102 - score = 48.28; uncharacterized protein 675033 3862958 TA07920 Theileria annulata uncharacterized protein XP_953006.1 673211 R 5874 CDS TA07925 3862959 complement(join(675544..675974,676017..676154,676217..676672,676726..676872,676904..677395,677435..677818,677854..677970,678000..678446,678505..678708,678773..679320,679353..679464,679560..679694,679732..679792)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.101 - score = 105.93; SMART pfam:RNA_pol_Rpb2_1 (PF04563) at aa 73-484, E()=1.20e-44; pfam:RNA_pol_Rpb2_2 (PF04561) at aa 241-426, E()=3.10e-56; pfam:RNA_pol_Rpb2_3 (PF04565) at aa 517-585, E()=1.10e-35; pfam:RNA_pol_Rpb2_4 (PF04566) at aa 619-681, E()=9.40e-28; pfam:RNA_pol_Rpb2_5 (PF04567) at aa 701-747, E()=6.80e-22; pfam:RNA_pol_Rpb2_6 (PF00562) at aa 752-1127, E()=3.20e-180; pfam:RNA_pol_Rpb2_7 (PF04560) at aa 1129-1221, E()=4.60e-51; DNA-directed RNA polymerase II subunit, putative 679792 3862959 TA07925 Theileria annulata DNA-directed RNA polymerase II subunit, putative XP_953007.1 675544 R 5874 CDS TA07930 3862960 680052..680765 4 1 NC_011098.1 Tap349h10.p1c.cand.124 - score = 17.74; SMART 3 transmembrane domains at aa 85-104, 152-169 and 205-227; 3 probable transmembrane helices predicted for TA07930 by TMHMM2.0 at aa 85-104, 152-169 and 205-227; uncharacterized protein 680765 3862960 TA07930 Theileria annulata uncharacterized protein XP_953008.1 680052 D 5874 CDS TA07935 3862961 join(681002..681036,681099..681202,681237..681417,681450..681567,681598..681676,681783..681947,682002..682159) 4 1 NC_011098.1 Tap349h10.p1c.cand.125 - score = 25.97; SMART 4 transmembrane domains at aa 39-61, 68-90, 175-197 and 204-226; 4 probable transmembrane helices predicted for TA07935 by TMHMM2.0 at aa 39-61, 68-90, 175-197 and 204-226; uncharacterized protein 682159 3862961 TA07935 Theileria annulata uncharacterized protein XP_953009.1 681002 D 5874 CDS TA07940 3862962 682685..684391 4 1 NC_011098.1 Tap349h10.p1c.cand.126 - score = 46.53; SMART pfam:Kelch (PF01344) at aa 21-66, E()=9.10e-05; 3 Kelch domains (SM00612) at aa 159-209, E()=9.10e-05; 210-259, E()=6.53e-01; 260-310, E()=2.43e+00; BTB (SM00225) at aa 379-505, E()=6.68e-17; uncharacterized protein 684391 3862962 TA07940 Theileria annulata uncharacterized protein XP_953010.1 682685 D 5874 CDS TA07945 3862963 join(684699..688325,688584..688886) 4 1 NC_011098.1 SMART pfam:Myosin_tail (PF01576) at aa 81-879, E()=5.80e-02; pfam:DUF164 (PF02591) at aa 437-661, E()=6.10e-02; pfam:CENP-B_N (PF04218) at aa 1197-1248, E()=9.30e-02; uncharacterized protein 688886 3862963 TA07945 Theileria annulata uncharacterized protein XP_953011.1 684699 D 5874 CDS TA07950 3862964 join(689085..689178,689209..689497,689552..689704,689760..689922,689966..690061,690093..690403,690434..690690,690722..691131) 4 1 NC_011098.1 Tap349h10.p1c.cand.128 - score = 47.77; uncharacterized protein 691131 3862964 TA07950 Theileria annulata uncharacterized protein XP_953012.1 689085 D 5874 CDS TA07955 3862965 complement(691184..691957) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.100 - score = 19.35; uncharacterized protein 691957 3862965 TA07955 Theileria annulata uncharacterized protein XP_953013.1 691184 R 5874 CDS TA07960 3862966 join(692349..692495,692643..692819) 4 1 NC_011098.1 SMART pfam:UCR_hinge (PF02320) at aa 27-98, E()=1.20e-04; ubiquinol-cytochrome c reductase complex, subunit, putative 692819 3862966 TA07960 Theileria annulata ubiquinol-cytochrome c reductase complex, subunit, putative XP_953014.1 692349 D 5874 CDS TA07965 3862967 complement(join(692994..693259,693348..693504,693547..693912,693947..694087,694131..694496,694529..694878,694919..694957,695002..695128)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.99 - score = 66.36; U4/U6-associated splicing factor, putative 695128 3862967 TA07965 Theileria annulata U4/U6-associated splicing factor, putative XP_953015.1 692994 R 5874 CDS TA07970 3862968 join(695515..695751,695800..695949,695978..696032,696157..696518) 4 1 NC_011098.1 SMART pfam:HORMA (PF02301) at aa 11-197, E()=8.20e-05; GPI-Anchor Signal predicted for TA07970 by DGPI v2.04 with cleavage site probability 0.36720002 near 297; uncharacterized protein 696518 3862968 TA07970 Theileria annulata uncharacterized protein XP_953016.1 695515 D 5874 CDS TA07975 3862969 complement(join(696663..696923,697009..697160,697211..697249,697319..697391)) 4 1 NC_011098.1 SMART pfam:Gar1 (PF02301) at aa 23-131, E()=5.70e-37; snoRNP (nucleolar) protein, putative 697391 3862969 TA07975 Theileria annulata snoRNP (nucleolar) protein, putative XP_953017.1 696663 R 5874 CDS TA07980 3862970 join(697605..697700,697733..697924,697968..698060,698093..698191,698265..698377,698410..698530) 4 1 NC_011098.1 Tap349h10.p1c.cand.130 - score = 23.30; SMART pfam:FtsJ (PF01728) at aa 35-216, E()=1.60e-62; ribosomal RNA methyltransferase (FtsJ homologue), putative 698530 3862970 TA07980 Theileria annulata ribosomal RNA methyltransferase (FtsJ homologue), putative XP_953018.1 697605 D 5874 CDS TA07985 3862971 complement(698660..701659) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.97 - score = 13.33; SMART 23 transmembrane domains at aa 94-116, 120-142, 149-171, 181-200, 213-235, 264-286, 298-320, 324-346, 353-375, 385-407, 414-436, 462-484, 511-533, 548-567, 580-597, 607-629, 642-664, 674-696, 728-750, 754-776, 789-811, 821-843 and 967-989; 24 probable transmembrane helices predicted for TA07985 by TMHMM2.0 at aa 30-52, 94-116, 120-142, 149-171, 181-200, 213-235, 264-286, 298-320, 324-346, 353-375, 385-407, 414-436, 462-484, 511-533, 548-567, 580-597, 607-629, 642-664, 674-696, 728-750, 754-776, 789-811, 821-843 and 967-989; uncharacterized protein 701659 3862971 TA07985 Theileria annulata uncharacterized protein XP_953019.1 698660 R 5874 CDS TA07990 3862972 complement(702210..703643) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.96 - score = 27.71; uncharacterized protein 703643 3862972 TA07990 Theileria annulata uncharacterized protein XP_953020.1 702210 R 5874 CDS TA07995 3862973 703933..709275 4 1 NC_011098.1 Tap349h10.p1c.cand.131 - score = 121.20; SMART pfam:DER1 (PF04511) at aa 870-1081, E()=4.50e-02; uncharacterized protein 709275 3862973 TA07995 Theileria annulata uncharacterized protein XP_953021.1 703933 D 5874 CDS TA08005 3862975 709370..710404 4 1 NC_011098.1 uncharacterized protein 710404 3862975 TA08005 Theileria annulata uncharacterized protein XP_953022.1 709370 D 5874 CDS TA08010 3862976 join(710519..711835,711880..712369,712431..712727,712759..712844) 4 1 NC_011098.1 Tap349h10.p1c.cand.132 - score = 43.78; uncharacterized protein 712844 3862976 TA08010 Theileria annulata uncharacterized protein XP_953023.1 710519 D 5874 CDS TA08015 3862977 complement(join(712905..713564,713628..714224)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.95 - score = 31.50; SMART RINGv (SM00744) at aa 209-272, E()=4.62e-18; FHA (SM00240) at aa 320-370, E()=7.50e-05; uncharacterized protein 714224 3862977 TA08015 Theileria annulata uncharacterized protein XP_953024.1 712905 R 5874 CDS TA08020 3862978 join(715510..715605,715690..715770,715803..715982) 4 1 NC_011098.1 SMART Sm (SM00651) at aa 8-73, E()=1.72e-10; snRNP protein, putative 715982 3862978 TA08020 Theileria annulata snRNP protein, putative XP_953025.1 715510 D 5874 CDS TA08025 3862979 716381..719548 4 1 NC_011098.1 Tap349h10.p1c.cand.134 - score = 66.33; uncharacterized protein 719548 3862979 TA08025 Theileria annulata uncharacterized protein XP_953026.1 716381 D 5874 CDS TA08030 3862980 join(719763..719891,719961..720081,720145..720233,720263..720718,720750..720824,720857..721282) 4 1 NC_011098.1 Tap349h10.p1c.cand.135 - score = 58.85; microfibrillar-associated protein, putative 721282 3862980 TA08030 Theileria annulata microfibrillar-associated protein, putative XP_953027.1 719763 D 5874 CDS TA08035 3862981 complement(join(721322..721471,721501..721611,721656..722000,722033..722147,722219..722349,722386..722535,722572..722685)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.94 - score = 35.59; uncharacterized protein 722685 3862981 TA08035 Theileria annulata uncharacterized protein XP_953028.1 721322 R 5874 CDS TA08040 3862982 722878..724593 4 1 NC_011098.1 Tap349h10.p1c.cand.136 - score = 46.59; SMART 4 WD40 domains (SM00320) at aa 49-94, E()=3.84e+00; 149-194, E()=1.37e-06; 227-268, E()=3.30e+01; 271-308, E()=2.76e+00; uncharacterized protein 724593 3862982 TA08040 Theileria annulata uncharacterized protein XP_953029.1 722878 D 5874 CDS TA08045 3862983 join(725155..725709,725803..726571,726655..727131,727249..728819) 4 1 NC_011098.1 Tap349h10.p1c.cand.137 - score = 83.09; SMART IBN_NT (PF03820) at aa 25-91, E()=2.00e-03; RAN-binding protein, putative 728819 3862983 TA08045 Theileria annulata RAN-binding protein, putative XP_953030.1 725155 D 5874 CDS TA08050 3862984 complement(join(729003..729167,729197..729259,729290..729391,729457..729780,729838..730169,730210..730486,730538..730813,730879..731037,731078..731200,731268..732656)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.93 - score = 83.05; SMART DEXDc (SM0487) at aa 179-364, E()=2.90e-32; HELICc (SM00490) at aa 480-566, E()=1.82e-15; DEAD-family helicase, putative 732656 3862984 TA08050 Theileria annulata DEAD-family helicase, putative XP_953031.1 729003 R 5874 CDS TA08065 3862987 complement(join(732830..733413,733467..735201)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.92 - score = 46.47; SMART pfam:Peptidase_S9 (PF00326) at aa 548-627, E()=8.60e-07; peptidase, putative 735201 3862987 TA08065 Theileria annulata peptidase, putative XP_953032.1 732830 R 5874 CDS TA08070 3862988 join(735486..735561,735595..735707,735770..735851,735948..736103,736161..736243,736276..736596) 4 1 NC_011098.1 Tap349h10.p1c.cand.138 - score = 30.88; SMART pfam:proteasome (PF00227) at aa 32-224, E()=7.50e-06; proteasome subunit (alpha type 6 homologue), putative 736596 3862988 TA08070 Theileria annulata proteasome subunit (alpha type 6 homologue), putative XP_953033.1 735486 D 5874 CDS TA08075 3862989 complement(join(736703..736878,736909..737044,737076..737214,737244..737402,737440..737529,737564..737631,737686..738126)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.91 - score = 71.18; SMART pfam:tRNA-synt_1b (PF00579) at aa 89-382, E()=8.90e-49; tyrosyl-tRNA synthetase, putative 738126 3862989 TA08075 Theileria annulata tyrosyl-tRNA synthetase, putative XP_953034.1 736703 R 5874 CDS TA08080 3862990 complement(join(738327..738694,738775..738987,739037..739100,739131..739484)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.91 - score = 71.18; SMART VWA (SM00237) at aa 4-171, E()=4.11e-01; pfam:KNOX2 (PF03791) at aa 206-255, E()=5.30e-02; uncharacterized protein 739484 3862990 TA08080 Theileria annulata uncharacterized protein XP_953035.1 738327 R 5874 CDS TA08085 3862991 join(739953..740165,740198..742798) 4 1 NC_011098.1 SMART pfam:XRN_N (PF03159) at aa 1-269, E()=3.70e-116; exoribonuclease (XRN family member), putative 742798 3862991 TA08085 Theileria annulata exoribonuclease (XRN family member), putative XP_953036.1 739953 D 5874 CDS TA08090 3862992 743525..748699 4 1 NC_011098.1 Tap349h10.p1c.cand.141 - score = 123.43; SMART pfam:Cnd1 (PF04594) at aa 361-481, E()=2.10e-02; pfam:SEA (PF01390) at aa 320-439, E()=5.10e-02; pfam:DUF577 (PF04510) at aa 1411-1566, E()=3.20e-02; condensin subunit, putative 748699 3862992 TA08090 Theileria annulata condensin subunit, putative XP_953037.1 743525 D 5874 CDS TA08095 3862993 join(748873..748959,748991..749263,749338..749559) 4 1 NC_011098.1 Tap349h10.p1c.cand.142 - score = 22.55; uncharacterized protein 749559 3862993 TA08095 Theileria annulata uncharacterized protein XP_953038.1 748873 D 5874 CDS TA08100 3862994 complement(749645..751441) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.90 - score = 45.39; uncharacterized protein 751441 3862994 TA08100 Theileria annulata uncharacterized protein XP_953039.1 749645 R 5874 CDS TA08105 3862995 join(752049..752642,752731..753723,753773..753874) 4 1 NC_011098.1 Tap349h10.p1c.cand.143 - score = 41.76; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA08105 by SignalP 2.0 HMM (Signal peptide probability 0.994, signal anchor probability 0.000) with cleavage site probability 0.607 between residues 23 and 24; uncharacterized protein 753874 3862995 TA08105 Theileria annulata uncharacterized protein XP_953040.1 752049 D 5874 CDS TA08110 3862996 complement(join(754005..754406,754460..754566,754622..754679,754708..754833,754911..754964,754995..755393)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.89 - score = 24.64; SMART 1 transmembrane domain at aa 37-59; TBC (SM00164) at aa 109-346, E()=1.56e-25; 1 probable transmembrane helix predicted for TA08110 by TMHMM2.0 at aa 37-59; Signal anchor predicted for TA08110 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.954) with cleavage site probability 0.000 between residues 53 and 54; GPI-Anchor Signal predicted for TA08110 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 755393 3862996 TA08110 Theileria annulata uncharacterized protein XP_953041.1 754005 R 5874 CDS TA08115 3862997 755616..756536 4 1 NC_011098.1 Tap349h10.p1c.cand.144 - score = 26.99; uncharacterized protein 756536 3862997 TA08115 Theileria annulata uncharacterized protein XP_953042.1 755616 D 5874 CDS TA08120 3862998 complement(join(756673..756831,756862..756947,757030..757202,757270..757419,757484..757629,757688..757983,758053..758140,758173..761808)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.88 - score = 88.44; SMART 4 WD40 domains (SM00320) at aa 8-47, E()+8.88e+00; 145-183, E()=1.12e-02; 1447-1482, E()=1.60e+00; 1485-1525, E()=8.22e+01; uncharacterized protein 761808 3862998 TA08120 Theileria annulata uncharacterized protein XP_953043.1 756673 R 5874 CDS TA08125 3862999 join(762653..762709,762745..762959,762992..763268) 4 1 NC_011098.1 Tap349h10.p1c.cand.145 - score = 22.82; SMART pfam:CBFD_NFYB_HMF (PF00808) at aa 44-106, E()=2.30e-02; uncharacterized protein 763268 3862999 TA08125 Theileria annulata uncharacterized protein XP_953044.1 762653 D 5874 CDS TA08130 3863000 complement(join(763295..764190,764267..764414)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.87 - score = 22.46; SMART AAA (SM00382) at aa 39-176, E()=1.88e-12; replication factor C subunit, putative 764414 3863000 TA08130 Theileria annulata replication factor C subunit, putative XP_953045.1 763295 R 5874 CDS TA08135 3863001 join(764749..764782,764848..765008,765058..765159,765187..766227) 4 1 NC_011098.1 Tap349h10.p1c.cand.146 - score = 34.68; SMART AAA (SM00382) at aa 286-419, E()=9.30e-03; uncharacterized protein 766227 3863001 TA08135 Theileria annulata uncharacterized protein XP_953046.1 764749 D 5874 CDS TA08140 3863002 766278..767561 4 1 NC_011098.1 Tap349h10.p1c.cand.147 - score = 30.46; uncharacterized protein 767561 3863002 TA08140 Theileria annulata uncharacterized protein XP_953047.1 766278 D 5874 CDS TA08145 3863003 complement(767680..768699) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.86 - score = 34.95; SMART pfam:gpdh (PF00044) at aa 2-152, E()=9.70e-77; pfam:gpdh_C (PF02800) at aa 153-316, E()=6.10e-116; glyceraldehyde-3-phosphate dehydrogenase, putative 768699 3863003 TA08145 Theileria annulata glyceraldehyde-3-phosphate dehydrogenase, putative XP_953048.1 767680 R 5874 CDS TA08150 3863004 complement(join(769309..770424,770536..770610)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.85 - score = 27.61; SMART pfam:Cytochrome_C1 (PF02167) at aa 158-383, E()=1.70e-109; 1 probable transmembrane helix predicted for TA08150 by TMHMM2.0 at aa 360-379; cytochrome C1 precursor, putative 770610 3863004 TA08150 Theileria annulata cytochrome C1 precursor, putative XP_953049.1 769309 R 5874 CDS TA08155 3863005 771304..772089 4 1 NC_011098.1 Tap349h10.p1c.cand.148 - score = 29.10; SMART ZnF_U1 (SM00451) at aa 93-127, E()=6.72e-10; ZnF_C2H2 (SM00355) at aa 96-120, E()=2.17e+01; uncharacterized protein 772089 3863005 TA08155 Theileria annulata uncharacterized protein XP_953050.1 771304 D 5874 CDS TA08160 3863006 complement(join(772163..772357,772417..772494,772528..772683,772758..773155,773254..773392)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.84 - score = 20.65; SMART pfam:Syntaxin (PF00804) at aa 60-218, E()=1.90e-02; t_SNARE (SM00397) at aa 225-284, E()=6.08e-01; syntaxin, putative 773392 3863006 TA08160 Theileria annulata syntaxin, putative XP_953051.1 772163 R 5874 CDS TA08170 3863008 complement(join(773585..773761,773833..774110,774175..774283)) 4 1 NC_011098.1 SMART pfam:Ribosomal_L13 (PF005822) at aa 1-107, E()=9.80e-32; 60S ribosomal protein L13, putative 774283 3863008 TA08170 Theileria annulata 60S ribosomal protein L13, putative XP_953052.1 773585 R 5874 CDS TA08175 3863009 join(774937..777045,777108..777259,777312..778188,778310..778620,778661..778796) 4 1 NC_011098.1 Tap349h10.p1c.cand.149 - score = 50.44; SMART PI3Kc (SM00146) at aa 912-1191, E()=1.14e-59; phosphatidylinositol 4-kinase, putative 778796 3863009 TA08175 Theileria annulata phosphatidylinositol 4-kinase, putative XP_953053.1 774937 D 5874 CDS TA08180 3863010 complement(join(778843..779014,779107..779536,779616..779786,779825..780439,780507..780598,780662..780929,781019..781148,781190..781210)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.82 - score = 46.80; SMART pfam:N_Arg (PF03485) at aa 11-99, E()=3.30e-02; pfam:tRNA-synt_1d (PF00750) at aa 121-463, E()=3.90e-126; GPI-Anchor Signal predicted for TA08180 by DGPI v2.04, no cleavage site predicted; arginyl-tRNA synthetase, putative 781210 3863010 TA08180 Theileria annulata arginyl-tRNA synthetase, putative XP_953054.1 778843 R 5874 CDS TA08185 3863011 complement(join(781527..781678,781741..781827,781970..781985,782018..782290)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.81 - score = 13.53; uncharacterized protein 782290 3863011 TA08185 Theileria annulata uncharacterized protein XP_953055.1 781527 R 5874 CDS TA08190 3863012 782664..783197 4 1 NC_011098.1 Tap349h10.p1c.cand.150 - score = 9.60; uncharacterized protein 783197 3863012 TA08190 Theileria annulata uncharacterized protein XP_953056.1 782664 D 5874 CDS TA08195 3863013 783228..783599 4 1 NC_011098.1 Tap349h10.p1c.cand.151 - score = 9.00; SMART pfam:Ribosomal_L14 (PF00238) at aa 9-123, E()=5.40e-17; 50S ribosomal protein L14, putative 783599 3863013 TA08195 Theileria annulata 50S ribosomal protein L14, putative XP_953057.1 783228 D 5874 CDS TA08200 3863014 complement(join(783737..784166,784249..784556)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.80 - score = 19.30; SMART RRM (SM00360) at aa 8-81, E()=1.35e-20; RNA-binding protein, putative 784556 3863014 TA08200 Theileria annulata RNA-binding protein, putative XP_953058.1 783737 R 5874 CDS TA08205 3863015 complement(join(784928..785047,785156..785287,785372..785488)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.79 - score = 10.96; SMART pfam:Ribosomal_L22e (PF01776) at aa 8-122, E()=9.60e-54; 60S ribosomal protein L22, putative 785488 3863015 TA08205 Theileria annulata 60S ribosomal protein L22, putative XP_953059.1 784928 R 5874 CDS TA08210 3863016 join(786163..786266,786364..786446,786511..786716,786787..787072,787101..787195,787264..787604,787693..787855) 4 1 NC_011098.1 Tap349h10.p1c.cand.152 - score = 34.70; SMART PINT (SM00088) at aa 330-413, E()=7.57e-14; 26S proteasome regulatory subunit, putative 787855 3863016 TA08210 Theileria annulata 26S proteasome regulatory subunit, putative XP_953060.1 786163 D 5874 CDS TA08215 3863017 complement(join(788013..788559,788631..788794,788834..789127,789196..789495)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.78 - score = 37.63; SMART PINT (SM00088) at aa 326-415, E()=4.66e-14; uncharacterized protein 789495 3863017 TA08215 Theileria annulata uncharacterized protein XP_953061.1 788013 R 5874 CDS TA08225 3863019 complement(join(789871..789992,790103..790356,790436..790881)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.77 - score = 20.87; SMART pfam:NOT (PF04153) at aa 138-261, E()=1.90e-06; uncharacterized protein 790881 3863019 TA08225 Theileria annulata uncharacterized protein XP_953062.1 789871 R 5874 CDS TA08230 3863020 complement(join(791470..792307,792393..795360,795408..795480,795566..795646,795749..795802)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.76 - score = 89.89; SMART ofam:Sec7 (PF01389) at aa 537-690, E()=6.20e-02; uncharacterized protein 795802 3863020 TA08230 Theileria annulata uncharacterized protein XP_953063.1 791470 R 5874 CDS TA08235 3863021 complement(join(795996..796059,796134..796539,796608..797257,797434..797474)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.75 - score = 38.04; SMART 1 transmembrane domain at aa 344-366; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA08235 by TMHMM2.0 at aa 19-36 and 344-366; Signal anchor predicted for TA08235 by SignalP 2.0 HMM (Signal peptide probability 0.043, signal anchor probability 0.826) with cleavage site probability 0.022 between residues 35 and 36; uncharacterized protein 797474 3863021 TA08235 Theileria annulata uncharacterized protein XP_953064.1 795996 R 5874 CDS TA08240 3863022 complement(797787..799937) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.74 - score = 54.33; SMART 5 RRM domains (SM00360) at aa 11-95, E()=1.28e-03; 207-293, E()=8.72e-15; 412-479, E()=4.82e-08; 535-612, E()=1.62e-09; 637-709, E()=3.01e-18; uncharacterized protein 799937 3863022 TA08240 Theileria annulata uncharacterized protein XP_953065.1 797787 R 5874 CDS TA08245 3863023 join(800168..800230,800336..800644,800832..801129,801212..801419,801449..801575) 4 1 NC_011098.1 Tap349h10.p1c.cand.154 - score = 13.48; SMART pfam:TP6A_N (PF04406) at aa 19-92, E()=8.50e-05; uncharacterized protein 801575 3863023 TA08245 Theileria annulata uncharacterized protein XP_953066.1 800168 D 5874 CDS TA08250 3863024 801620..802123 4 1 NC_011098.1 Tap349h10.p1c.cand.154 - score = 13.48; uncharacterized protein 802123 3863024 TA08250 Theileria annulata uncharacterized protein XP_953067.1 801620 D 5874 CDS TA08255 3863025 complement(join(802344..803115,803230..803322,803354..803443,803478..803732,803790..803913,803953..804450,804530..804665)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.73 - score = 49.97; SMART DnaJ (SM00271) at aa 137-215, E()=7.52e-09; SANT (SM00717) at aa 521-573, E()=3.91e-07; DNA-binding chaperone, putative 804665 3863025 TA08255 Theileria annulata DNA-binding chaperone, putative XP_953068.1 802344 R 5874 CDS TA08260 3863026 complement(804920..805570) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.72 - score = 9.47; Signal peptide predicted for TA08260 by SignalP 2.0 HMM (Signal peptide probability 0.982, signal anchor probability 0.000) with cleavage site probability 0.312 between residues 18 and 19; uncharacterized protein 805570 3863026 TA08260 Theileria annulata uncharacterized protein XP_953069.1 804920 R 5874 CDS TA08265 3863027 complement(805998..806321) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.71 - score = 11.93; SMART H2B (SM00427) at aa 8-104, E()=4.65e-63; histone H2B, putative 806321 3863027 TA08265 Theileria annulata histone H2B, putative XP_953070.1 805998 R 5874 CDS TA08270 3863028 join(807090..807157,807211..807228,807296..807797,807881..809401) 4 1 NC_011098.1 Tap349h10.p1c.cand.155 - score = 41.96; uncharacterized protein 809401 3863028 TA08270 Theileria annulata uncharacterized protein XP_953071.1 807090 D 5874 CDS TA08285 3863031 complement(809567..811396) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.70 - score = 30.38; SMART 9 transmembrane domains at aa 20-42, 239-261, 271-293, 334-356, 376-398, 411-433, 478-500, 521-543 and 553-575; 9 probable transmembrane helices predicted for TA08285 by TMHMM2.0 at aa 20-42, 239-261, 271-293, 334-356, 376-398, 411-433, 478-500, 521-543 and 553-575; Tpr-related protein family member, putative 811396 3863031 TA08285 Theileria annulata Tpr-related protein family member, putative XP_953072.1 809567 R 5874 CDS TA08290 3863032 complement(join(811648..812960,813088..813141,813223..813898)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.68 - score = 13.31; SfiI-subtelomeric fragment related protein family member, putative 813898 3863032 TA08290 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953073.1 811648 R 5874 CDS TA08295 3863033 complement(814059..817859) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.67 - score = 80.92; SMART pfam:SMC_N (PF02463) at aa 1-172, E()=1.10e-55; pfam:filament (PF00038) at aa 699-975, E()=1.00e-01; pfam:SMC_C (PF02483) at aa 1048-1246, E()+3.60e-27; pfam:ABC_tran (PF00005) at aa 1074-1233, E()=3.00e-03; chromosome segregation protein (SMC homologue), putative 817859 3863033 TA08295 Theileria annulata chromosome segregation protein (SMC homologue), putative XP_953074.1 814059 R 5874 CDS TA08300 3863034 join(818405..818525,818564..818916,819001..819108,819205..819333,819409..819568,819670..819797) 4 1 NC_011098.1 Tap349h10.p1c.cand.156 - score = 17.27; SMART PP2Cc (SM00332) at aa 21-321, E()=2.65e-45; serine/threonine protein phosphatase 2C, putative 819797 3863034 TA08300 Theileria annulata serine/threonine protein phosphatase 2C, putative XP_953075.1 818405 D 5874 CDS TA08302 3863035 join(821181..821369,821400..821870) 4 1 NC_011098.1 uncharacterized protein 821870 3863035 TA08302 Theileria annulata uncharacterized protein XP_953076.1 821181 D 5874 CDS TA08305 3863036 822078..822824 4 1 NC_011098.1 Tap349h10.p1c.cand.159 - score = 12.07; SMART 2 transmembrane domains at aa 88-110 and 139-158; 2 probable transmembrane helices predicted for TA08305 by TMHMM2.0 at aa 88-110 and 139-158; uncharacterized protein 822824 3863036 TA08305 Theileria annulata uncharacterized protein XP_953077.1 822078 D 5874 CDS TA08310 3863037 822980..825298 4 1 NC_011098.1 Tap349h10.p1c.cand.160 - score = 36.12; uncharacterized protein 825298 3863037 TA08310 Theileria annulata uncharacterized protein XP_953078.1 822980 D 5874 CDS TA08315 3863038 complement(join(825435..825924,826029..826204,826236..826436)) 4 1 NC_011098.1 uncharacterized protein 826436 3863038 TA08315 Theileria annulata uncharacterized protein XP_953079.1 825435 R 5874 CDS TA08320 3863039 join(826641..826750,826897..827091,827209..827425,827513..827656,827687..827907,827937..828043,828072..828130,828160..828201,828233..828440,828581..828674,828723..828846,828956..829075,829193..829328,829604..829617,829692..829886) 4 1 NC_011098.1 SMART pfam:lactamase_B (PF00753) at aa 422-591, E()=6.00e-04; uncharacterized protein 829886 3863039 TA08320 Theileria annulata uncharacterized protein XP_953080.1 826641 D 5874 CDS TA08325 3863040 join(831091..831211,831242..831368,831463..831631,831994..832231,832273..832377,832407..832520,832589..832883,833015..833343,833499..833770,833816..833966,834026..834519,834607..834698,834746..834863,834896..834996,835096..835294,835418..835593,835623..835764) 4 1 NC_011098.1 Actually it seemed that there is a deletion of the internal part of the Q8IKI3 protein; 12 probable transmembrane helices predicted for TA08325 by TMHMM2.0 at aa 19-38, 48-67, 158-180, 195-217, 238-260, 275-294, 307-329, 339-361, 766-788, 792-814, 1009-1031 and 1057-1079; Signal anchor predicted for TA08325 by SignalP 2.0 HMM (Signal peptide probability 0.130, signal anchor probability 0.844) with cleavage site probability 0.077 between residues 38 and 39; GPI-Anchor Signal predicted for TA08325 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 835764 3863040 TA08325 Theileria annulata uncharacterized protein XP_953081.1 831091 D 5874 CDS TA08330 3863041 complement(join(835935..836126,836200..836322,836486..836826,836953..837780,837812..837884,837967..838075,838142..838217,838316..838625)) 4 1 NC_011098.1 SMART 2 transmembrane domains at aa 132-154 and 166-188; 2 probable transmembrane helices predicted for TA08330 by TMHMM2.0 at aa 132-154 and 166-188; uncharacterized protein 838625 3863041 TA08330 Theileria annulata uncharacterized protein XP_953082.1 835935 R 5874 CDS TA08340 3863043 join(839488..839502,839536..840171) 4 1 NC_011098.1 Tap349h10.p1c.cand.164 - score = 7.18; SMART KH (SM00322) at aa 43-107, E()=2.61e-01; 40S ribosomal protein S3, putative 840171 3863043 TA08340 Theileria annulata 40S ribosomal protein S3, putative XP_953083.1 839488 D 5874 CDS TA08345 3863044 complement(join(840299..840339,840449..840563,840679..840695,840725..840849,840879..840980,841038..841126,841185..841331,841432..841483,841513..841619)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.63 - score = 16.71; uncharacterized protein 841619 3863044 TA08345 Theileria annulata uncharacterized protein XP_953084.1 840299 R 5874 CDS TA08350 3863045 join(842100..842214,842358..842587,842633..842772,842805..842925,843028..843199,843236..843268,843295..843358,843452..843518,843553..843661,843837..843982,844088..844288,844376..844433,844463..844953,845042..845211,845242..845309,845421..845538,845570..845654) 4 1 NC_011098.1 SMART 2 pfam:Kelch domains (PF01344) at aa 16-66, E()=2.00e-03 and 141-188, E()=1.30e-03; 1 transmembrane domain at aa 101-118; PP2Ac (SM00156) at aa 450-755, E()=5.90e-99; 1 probable transmembrane helix predicted for TA08350 by TMHMM2.0 at aa 101-118; serine/threonine phosphatase, putative 845654 3863045 TA08350 Theileria annulata serine/threonine phosphatase, putative XP_953085.1 842100 D 5874 CDS TA08355 3863046 join(845756..845940,846030..846391,846430..846989,847084..847257,847319..847415,847509..847649,847734..847823,847855..847976,848007..848105,848221..848530,848560..848723,848759..848906,848959..849211,849335..849755) 4 1 NC_011098.1 Tap349h10.p1c.cand.166 - score = 63.70; SMART 5 pfam:PC_rep (PF01851) at aa 454-488, E()=9.70e-03; 491-525, E()=8.40e-04; 526-560, E()=6.60e-05; 632-664, E()=8.00e-02; 666-700, E()=8.20e-02; 26S proteasome regulatory subunit, putative 849755 3863046 TA08355 Theileria annulata 26S proteasome regulatory subunit, putative XP_953086.1 845756 D 5874 CDS TA08360 3863047 complement(850041..851333) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.62 - score = 27.96; Signal peptide predicted for TA08360 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.002) with cleavage site probability 0.900 between residues 18 and 19; uncharacterized protein 851333 3863047 TA08360 Theileria annulata uncharacterized protein XP_953087.1 850041 R 5874 CDS TA08365 3863048 complement(851755..854220) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.61 - score = 41.73; Signal peptide predicted for TA08365 by SignalP 2.0 HMM (Signal peptide probability 0.983, signal anchor probability 0.000) with cleavage site probability 0.880 between residues 16 and 17; uncharacterized protein 854220 3863048 TA08365 Theileria annulata uncharacterized protein XP_953088.1 851755 R 5874 CDS TA08370 3863049 complement(854690..857293) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.60 - score = 51.36; Signal peptide predicted for TA08370 by SignalP 2.0 HMM (Signal peptide probability 0.999, signal anchor probability 0.000) with cleavage site probability 0.868 between residues 21 and 22; uncharacterized protein 857293 3863049 TA08370 Theileria annulata uncharacterized protein XP_953089.1 854690 R 5874 CDS TA08375 3863050 complement(join(857816..858727,858835..859152)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.59 - score = 32.00; uncharacterized protein 859152 3863050 TA08375 Theileria annulata uncharacterized protein XP_953090.1 857816 R 5874 CDS TA08380 3863051 join(860638..860693,860749..860865,860909..860954,861049..861198,861232..861411) 4 1 NC_011098.1 Tap349h10.p1c.cand.167 - score = 18.13; SMART PUA (SM00359) at aa 105-177, E()=6.94e-05; 60S ribosome subunit biogenesis protein (Nip7 homologue), putative 861411 3863051 TA08380 Theileria annulata 60S ribosome subunit biogenesis protein (Nip7 homologue), putative XP_953091.1 860638 D 5874 CDS TA08385 3863052 join(861552..862358,862390..862454,862501..862579) 4 1 NC_011098.1 Tap349h10.p1c.cand.168 - score = 49.53; uncharacterized protein 862579 3863052 TA08385 Theileria annulata uncharacterized protein XP_953092.1 861552 D 5874 CDS TA08395 3863054 join(862616..863131,863163..863372,863421..863473,863634..864405,864438..864529,864561..864606,864636..865691) 4 1 NC_011098.1 uncharacterized protein 865691 3863054 TA08395 Theileria annulata uncharacterized protein XP_953093.1 862616 D 5874 CDS TA08400 3863055 complement(join(865780..866215,866256..867244)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.58 - score = 21.36; uncharacterized protein 867244 3863055 TA08400 Theileria annulata uncharacterized protein XP_953094.1 865780 R 5874 CDS TA08405 3863056 join(867537..867679,867711..867870,867906..868025,868054..868120,868162..868244,868276..868410,868471..868911) 4 1 NC_011098.1 Tap349h10.p1c.cand.170 - score = 174.08; uncharacterized protein 868911 3863056 TA08405 Theileria annulata uncharacterized protein XP_953095.1 867537 D 5874 CDS TA08410 3863057 join(869108..869623,869656..873240) 4 1 NC_011098.1 Tap349h10.p1c.cand.170 - score = 174.08; SMART PH (SM00223) at aa 25-185, E()=8.93e-02; DysFC (SM00694) at aa 953-986, E()=2.16e-01; 4 transmembrane domains at aa 572-589, 594-613, 618-640 and 838-860; 4 probable transmembrane helices predicted for TA08410 by TMHMM2.0 at aa 572-589, 594-613, 618-640 and 838-860; uncharacterized protein 873240 3863057 TA08410 Theileria annulata uncharacterized protein XP_953096.1 869108 D 5874 CDS TA08415 3863058 873363..874679 4 1 NC_011098.1 Tap349h10.p1c.cand.170 - score = 174.08; 2 probable transmembrane helices predicted for TA08415 by TMHMM2.0 at aa 5-27 and 298-329; Signal peptide predicted for TA08415 by SignalP 2.0 HMM (Signal peptide probability 0.990, signal anchor probability 0.000) with cleavage site probability 0.454 between residues 33 and 34; uncharacterized protein 874679 3863058 TA08415 Theileria annulata uncharacterized protein XP_953097.1 873363 D 5874 CDS TA08420 3863059 join(874711..874949,874983..875036,875076..875263,875295..875722,875755..875997) 4 1 NC_011098.1 Tap349h10.p1c.cand.171 - score = 39.84; SMART pfam:vATP-synt_AC39 (PF01992) at aa 12-377, E()=2.10e-60; vacuolar ATP synthase, subunit, putative 875997 3863059 TA08420 Theileria annulata vacuolar ATP synthase, subunit, putative XP_953098.1 874711 D 5874 CDS TA08425 3863060 876415..879096 4 1 NC_011098.1 Tap349h10.p1c.cand.172 - score = 66.70; SMART pfam:DUF529 (PF404385) at aa 268-401, E()=3.40e-02; 1 transmembrane domain at aa 875-892; 1 probable transmembrane helix predicted for TA08425 by TMHMM2.0 at aa 875-892; Signal peptide predicted for TA08425 by SignalP 2.0 HMM (Signal peptide probability 1.000, signal anchor probability 0.000) with cleavage site probability 0.762 between residues 19 and 20; GPI-Anchor Signal predicted for TA08425 by DGPI v2.04 with cleavage site probability 1.131 near 873; Theileria parva microneme-rhoptry antigen, putative 879096 3863060 TA08425 Theileria annulata Theileria parva microneme-rhoptry antigen, putative XP_953099.1 876415 D 5874 CDS TA08430 3863061 complement(join(879397..879747,879810..880088,880117..880197,880227..880287,880317..880914,880949..881282)) 4 1 NC_011098.1 uncharacterized protein 881282 3863061 TA08430 Theileria annulata uncharacterized protein XP_953100.1 879397 R 5874 CDS TA08435 3863062 join(881352..881846,881934..882011,882082..882144,882171..882294,882443..882552,882583..882696,882729..882890,882926..883051,883126..883218,883289..883381) 4 1 NC_011098.1 Tap349h10.p1c.cand.173 - score = 45.37; SMART PINT (SM00088) at aa 356-446, E()=9.99e-14; uncharacterized protein 883381 3863062 TA08435 Theileria annulata uncharacterized protein XP_953101.1 881352 D 5874 CDS TA08440 3863063 883613..885844 4 1 NC_011098.1 Tap349h10.p1c.cand.174 - score = 76.32; uncharacterized protein 885844 3863063 TA08440 Theileria annulata uncharacterized protein XP_953102.1 883613 D 5874 CDS TA08445 3863064 complement(885936..886949) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.55 - score = 16.85; Signal peptide predicted for TA08445 by SignalP 2.0 HMM (Signal peptide probability 0.959, signal anchor probability 0.040) with cleavage site probability 0.357 between residues 26 and 27; uncharacterized protein 886949 3863064 TA08445 Theileria annulata uncharacterized protein XP_953103.1 885936 R 5874 CDS TA08450 3863065 887273..888748 4 1 NC_011098.1 Tap349h10.p1c.cand.175 - score = 39.11; SMART pfam:ATP-synt_ab_N (PF02874) at aa 34-100, E()=1.50e-12; pfam:ATP-synT_ab (PF00006) at aa 209-388, E()=2.10e-84; pfam:ATP-synt_ab_C (PF00306) at aa 395-488, E()=2.90e-21; vacuolar ATP synthase, subunit beta, putative 888748 3863065 TA08450 Theileria annulata vacuolar ATP synthase, subunit beta, putative XP_953104.1 887273 D 5874 CDS TA08455 3863066 complement(join(889037..889223,889323..890308)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.54 - score = 28.03; uncharacterized protein 890308 3863066 TA08455 Theileria annulata uncharacterized protein XP_953105.1 889037 R 5874 CDS TA08460 3863067 join(890775..891348,891384..891517,891551..891599,891631..891650,891706..892092,892134..892304) 4 1 NC_011098.1 Tap349h10.p1c.cand.176 - score = 39.18; uncharacterized protein 892304 3863067 TA08460 Theileria annulata uncharacterized protein XP_953106.1 890775 D 5874 CDS TA08465 3863068 complement(join(892407..892619,892671..892759,892791..892847,892879..892978,893007..893166,893232..893317,893377..893634)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.53 - score = 25.72; SMART JAB_MPN (SM00232) at aa 32-175, E()=1.52e-04; uncharacterized protein 893634 3863068 TA08465 Theileria annulata uncharacterized protein XP_953107.1 892407 R 5874 CDS TA08470 3863069 complement(join(893793..894164,894201..894779,894813..895227,895367..896532)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.52 - score = 42.81; SMART STYKc (SM00221) at aa 101-396, E()=8.39e-07; 113-45, E()=1.01e-19; pfam:cyclin (PF00134) at aa 500-645, E()=1.30e-02; cyclin-dependent serimne/threonine kinase (Cdk)-related protein, putative 896532 3863069 TA08470 Theileria annulata cyclin-dependent serimne/threonine kinase (Cdk)-related protein, putative XP_953108.1 893793 R 5874 CDS TA08475 3863070 complement(897604..898356) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.51 - score = 15.46; SMART 3 domains ZnF_C3H1 (SM00356) at aa 69-95, E()=1.56e-02; 101-128, E()=1.91e+00; 130-154, E()=9.02e-01; uncharacterized protein 898356 3863070 TA08475 Theileria annulata uncharacterized protein XP_953109.1 897604 R 5874 CDS TA08480 3863071 join(899367..900128,900184..900626,900681..900789,900838..900975,901055..901660,901736..901855,901894..901977,902124..902285) 4 1 NC_011098.1 Tap349h10.p1c.cand.177 - score = 44.47; SMART 7 transmembrane domains at aa 180-202, 217-239, 276-298, 379-401, 414-436, 521-540 and 553-575; 7 probable transmembrane helices predicted for TA08480 by TMHMM2.0 at aa 180-202, 217-239, 276-298, 379-401, 414-436, 521-540 and 553-575; uncharacterized protein 902285 3863071 TA08480 Theileria annulata uncharacterized protein XP_953110.1 899367 D 5874 CDS TA08485 3863072 join(902636..902918,902976..903497,903550..903947) 4 1 NC_011098.1 Tap349h10.p1c.cand.178 - score = 24.33; SMART 1 transmembrane domain at aa 20-42; 1 probable transmembrane helix predicted for TA08485 by TMHMM2.0 at aa 20-42; Signal anchor predicted for TA08485 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.918) with cleavage site probability 0.000 between residues 41 and 42; uncharacterized protein 903947 3863072 TA08485 Theileria annulata uncharacterized protein XP_953111.1 902636 D 5874 CDS TA08490 3863073 join(904130..904849,904905..905120,905161..905217,905259..905310,905344..905511,905601..905911) 4 1 NC_011098.1 Tap349h10.p1c.cand.179 - score = 32.38; SMART pfam:Fumble (PF03630) at aa 144-503, E()1.10e-10; 1 probable transmembrane helix predicted for TA08490 by TMHMM2.0 at aa 377-396; pantothenate kinase, putative 905911 3863073 TA08490 Theileria annulata pantothenate kinase, putative XP_953112.1 904130 D 5874 CDS TA08500 3863075 join(906415..906496,906511..906689,906727..906864) 4 1 NC_011098.1 uncharacterized protein 906864 3863075 TA08500 Theileria annulata uncharacterized protein XP_953113.1 906415 D 5874 CDS TA08505 3863076 907013..907411 4 1 NC_011098.1 Tap349h10.p1c.cand.180 - score = 9.95; uncharacterized protein 907411 3863076 TA08505 Theileria annulata uncharacterized protein XP_953114.1 907013 D 5874 CDS TA08510 3863077 907647..907868 4 1 NC_011098.1 Tap349h10.p1c.cand.181 - score = 7.25; uncharacterized protein 907868 3863077 TA08510 Theileria annulata uncharacterized protein XP_953115.1 907647 D 5874 CDS TA08515 3863116 join(909310..909435,909542..909636,909748..909859,909891..909936,909993..910445,910514..911447,911498..911624,911674..912336,912400..912906) 4 1 NC_011098.1 Tap349h10.p1c.cand.183 - score = 71.00; SMART TBC (SM00164) at aa 373-764, E()=8.83e-03; TLDc (SM00584) at aa 830-1020, E()=8.42e-12; 2 probable transmembrane helices predicted for TA08515 by TMHMM2.0 at aa 632-654 and 679-696; uncharacterized protein 912906 3863116 TA08515 Theileria annulata uncharacterized protein XP_953116.1 909310 D 5874 CDS TA08520 3863117 complement(join(912968..913812,913930..914746)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.50 - score = 24.98; SMART 9 transmembrane domains at aa 66-88, 95-117, 121-143, 156-178, 198-220, 255-277, 367-389, 396-418 and 473-495; 10 probable transmembrane helices predicted for TA08520 by TMHMM2.0 at aa 21-43, 66-88, 95-117, 121-143, 156-178, 198-220, 255-277, 367-389, 396-418 and 473-495; uncharacterized protein 914746 3863117 TA08520 Theileria annulata uncharacterized protein XP_953117.1 912968 R 5874 CDS TA08525 3863118 complement(join(915061..915199,915265..915566,915657..916094)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.49 - score = 29.00; uncharacterized protein 916094 3863118 TA08525 Theileria annulata uncharacterized protein XP_953118.1 915061 R 5874 CDS TA08530 3863119 join(916925..917078,917161..917450,917534..917599,917652..918410) 4 1 NC_011098.1 Tap349h10.p1c.cand.184 - score = 29.91; SMART pfam:biotin_lipoyl (PF00364) at aa 42-115, E()=1.20e-22; pfam:2-oxoacid_dh (PF00198) at aa 168-420, E()=1.90e-65; 2-oxoglutarate dehydrogenase complex subunit, putative 918410 3863119 TA08530 Theileria annulata 2-oxoglutarate dehydrogenase complex subunit, putative XP_953119.1 916925 D 5874 CDS TA08535 3863120 complement(918637..920463) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.48 - score = 64.87; SMART 9 transmembrane domains at aa 253-275, 282-304, 309-331, 344-366, 399-421, 434-453, 473-495, 515-534, and 544-566; 9 probable transmembrane helices predicted for TA08535 by TMHMM2.0 at aa 253-275, 282-304, 309-331, 344-366, 399-421, 434-453, 473-495, 515-534 and 544-566; Tpr-related protein family member, putative 920463 3863120 TA08535 Theileria annulata Tpr-related protein family member, putative XP_953120.1 918637 R 5874 CDS TA08540 3863121 complement(920643..923177) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.48 - score = 64.87; SMART 11 transmembrane domains at aa 20-42, 498-520, 527-549, 564-581, 590-612, 632-654, 667-686, 713-735, 755-777, 787-806 and 826-843; 11 probable transmembrane helices predicted for TA08540 by TMHMM2.0 at aa 20-42, 498-520, 527-549, 564-581, 590-612, 632-654, 667-686, 713-735, 755-777, 787-806 and 826-843; Tpr-related protein family member, putative 923177 3863121 TA08540 Theileria annulata Tpr-related protein family member, putative XP_953121.1 920643 R 5874 CDS TA08545 3863122 complement(join(923320..925232,925269..925542)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.47 - score = 39.91; SMART pfam:Spc97_Spc98 (PF04120) at aa 42-589, E()=2.40e-87; spindle pole body/centrosome component, putative 925542 3863122 TA08545 Theileria annulata spindle pole body/centrosome component, putative XP_953122.1 923320 R 5874 CDS TA08560 3863125 complement(join(925694..926105,926202..926627,926687..926756,926812..927307,927405..927827,927926..928081)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.46 - score = 36.13; SMART 5 ANK domains (SM00248) at aa 84-113, E()=3.65e-03; 118-148, E()=5.58e-+01; 153-189, E()=7.75e+02; 193-222, E()=9.13e-04; 226-256, E()=2.15e+00; ZnF_NFX (SM00438) at aa 505-524, E()=0.00e+00; 4 transmembrane domains at aa 305-327, 337-359, 545-564 and 579-601; 4 probable transmembrane helices predicted for TA08560 by TMHMM2.0 at aa 305-327, 337-359, 545-564 and 579-601; uncharacterized protein 928081 3863125 TA08560 Theileria annulata uncharacterized protein XP_953123.1 925694 R 5874 CDS TA08565 3863126 join(928831..928963,929025..929246,929329..929619,929679..930035,930100..930644,930715..930951) 4 1 NC_011098.1 Tap349h10.p1c.cand.185 - score = 40.53; SMART pfam:lipin_N (PF04571) at aa 6-114, E()=3.20e-18; uncharacterized protein 930951 3863126 TA08565 Theileria annulata uncharacterized protein XP_953124.1 928831 D 5874 CDS TA08570 3863127 complement(join(931092..931400,931483..931635)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.45 - score = 17.05; SMART pfam:RNA_pol_Rpb6 (PF01192) at aa 61-135, E()=8.50e-15 (PF01192); RNA polymerase common subunit (Rpb6 homologue), putative 931635 3863127 TA08570 Theileria annulata RNA polymerase common subunit (Rpb6 homologue), putative XP_953125.1 931092 R 5874 CDS TA08575 3863128 complement(join(931779..931990,932178..932637)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.44 - score = 12.81; SMART pfam:MSP_domain (PF00635) at aa 4-118, E()=1.00e-21; 1 probable transmembrane helix predicted for TA08575 by TMHMM2.0 at aa 203-222; vesicle-associated membrane protein, putative 932637 3863128 TA08575 Theileria annulata vesicle-associated membrane protein, putative XP_953126.1 931779 R 5874 CDS TA08580 3863129 complement(join(933144..934037,934109..934191,934235..934395,934448..934783,934937..935199)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.43 - score = 44.26; uncharacterized protein 935199 3863129 TA08580 Theileria annulata uncharacterized protein XP_953127.1 933144 R 5874 CDS TA08585 3863130 complement(join(936096..936402,936454..936725,936758..936837,936872..937000,937032..937107,937175..937243,937301..937436,937507..937616,937654..937753,937783..938022,938083..938180,938314..938412)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.42 - score = 41.48; uncharacterized protein 938412 3863130 TA08585 Theileria annulata uncharacterized protein XP_953128.1 936096 R 5874 CDS TA08590 3863131 join(938350..938600,938641..938744,938855..939303,939392..939577) 4 1 NC_011098.1 Tap349h10.p1c.cand.186 - score = 21.58; SMART pfam:TIM (PF00121) at aa 84-329, E()=7.40e-118; triosephosphate isomerase, putative 939577 3863131 TA08590 Theileria annulata triosephosphate isomerase, putative XP_953129.1 938350 D 5874 CDS TA08595 3863132 join(939839..939887,939975..941149) 4 1 NC_011098.1 Tap349h10.p1c.cand.187 - score = 32.60; SMART pfam:zf-CCCH (PF00642) at aa 175-200, E()=8.60e-02; pfam:rrm (PF00076) at aa 241-316, E()=3.20e-02; pre-mRNA splicing complex subunit (Spcwf2 homologue), putative 941149 3863132 TA08595 Theileria annulata pre-mRNA splicing complex subunit (Spcwf2 homologue), putative XP_953130.1 939839 D 5874 CDS TA08600 3863133 complement(join(941261..941474,941530..941735)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.41 - score = 12.34; uncharacterized protein 941735 3863133 TA08600 Theileria annulata uncharacterized protein XP_953131.1 941261 R 5874 CDS TA08605 3863134 join(941978..942223,942335..942634,942698..942785,942839..942996,943031..943171,943209..944993,945058..945200,945232..945328,945360..945536) 4 1 NC_011098.1 uncharacterized protein 945536 3863134 TA08605 Theileria annulata uncharacterized protein XP_953132.1 941978 D 5874 CDS TA08615 3863156 join(945675..945781,945899..946022,946105..946218) 4 1 NC_011098.1 Tap349h10.p1c.cand.189 - score = 14.54; SMART pfam:KE2 (PF01920) at aa 4-111, E()=1.90e-08; pfam:Prefoldin (PF02996) at aa 7-109, E()=6.50e-02; uncharacterized protein 946218 3863156 TA08615 Theileria annulata uncharacterized protein XP_953133.1 945675 D 5874 CDS TA08620 3863157 complement(join(946301..947101,947164..948402)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.40 - score = 44.37; SMART pfam:tRNA-synt_2 (Pf00152) at aa 330-678, E()=2.60e-50; pfam:tRNA-synt_2b (PF00587) at aa 328-463, E()=3.40e-04; pfam:tRNA-synt_2d (PF01409) at aa 344-668, E()=3.70e-03; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA08620 by SignalP 2.0 HMM (Signal peptide probability 0.921, signal anchor probability 0.000) with cleavage site probability 0.692 between residues 23 and 24; lysyl t-RNA synthetase, putative 948402 3863157 TA08620 Theileria annulata lysyl t-RNA synthetase, putative XP_953134.1 946301 R 5874 CDS TA08625 3863158 join(948610..948784,948861..948958) 4 1 NC_011098.1 Tap349h10.p1c.cand.190 - score = 10.80; SMART pfam:RNA_pol_L (PF01193) at aa 1-87, E()=8.10e-28; RNA polymerases I and III subunit (RPC19 homologue), putative 948958 3863158 TA08625 Theileria annulata RNA polymerases I and III subunit (RPC19 homologue), putative XP_953135.1 948610 D 5874 CDS TA08630 3863159 join(949386..949556,949613..949769,949854..949943,949975..950200,950232..950382,950431..950784,950818..951333,951401..951499,951552..952151,952217..952456) 4 1 NC_011098.1 Tap349h10.p1c.cand.191 - score = 62.98; SMART 2 BBOX domains (SM00336) at aa 194-214, E()=3.19e-03 and 246-293, E()=1.84e+00; ZnF_NFX (SM00438) at aa 199-224, E()=0.00e+00; uncharacterized protein 952456 3863159 TA08630 Theileria annulata uncharacterized protein XP_953136.1 949386 D 5874 CDS TA08635 3863160 complement(join(952562..952982,953077..953127,953176..953214,953249..953712,953758..954723,954754..954833,954867..955457,955489..955532,955565..955679,955708..955826,955859..955989,956023..956179,956226..956425,956458..956496,956540..956728)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.39 - score = 103.11; SMART pfam:Peptidase_M16 (PF00675) at aa 98-238, E()=6.90e-07; pfam:Peptidase_M16_C (PF05193) at aa 253-452, E()=1.00e-02; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA08635 by TMHMM2.0 at aa 13-35; Signal peptide predicted for TA08635 by SignalP 2.0 HMM (Signal peptide probability 0.672, signal anchor probability 0.242) with cleavage site probability 0.237 between residues 32 and 33; M16 peptidase, putative 956728 3863160 TA08635 Theileria annulata M16 peptidase, putative XP_953137.1 952562 R 5874 CDS TA08640 3863161 join(957069..957333,957431..957585,957614..957734,957764..957854,957886..958189,958222..958547,958580..958985,959033..959104,959134..959234,959302..959407) 4 1 NC_011098.1 Tap349h10.p1c.cand.192 - score = 57.37; SMART 4 pfam:HEAT (PF02985) domains at aa 203-239, E()=6.20e-02; 395-433, E()=2.70e-02; 474-512, E()=3.30e-05; 563-601, E()=1.60e-04; phosphorylase phosphatase, putative 959407 3863161 TA08640 Theileria annulata phosphorylase phosphatase, putative XP_953138.1 957069 D 5874 CDS TA08645 3863162 join(959489..959600,959673..959876,959929..960175,960220..960353,960417..960487,960519..960683,960714..960858,960927..960982) 4 1 NC_011098.1 Tap349h10.p1c.cand.193 - score = 32.78; SMART rADC (SM00650) at aa 84-252, E()=4.31e-65; dimethyladenosine transferase, putative 960982 3863162 TA08645 Theileria annulata dimethyladenosine transferase, putative XP_953139.1 959489 D 5874 CDS TA08650 3863163 complement(join(960983..961199,961303..961459,961742..961857,961952..963118,963159..963604,963634..963695,963725..963786,963840..964182,964247..964344,964391..964479)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.38 - score = 133.54; SMART pfam:zf-HIT (PF04438) at aa 865-902, E()=3.70e-05; uncharacterized protein 964479 3863163 TA08650 Theileria annulata uncharacterized protein XP_953140.1 960983 R 5874 CDS TA08655 3863164 complement(964719..968015) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.38 - score = 133.54; uncharacterized protein 968015 3863164 TA08655 Theileria annulata uncharacterized protein XP_953141.1 964719 R 5874 CDS TA08660 3863165 complement(join(968427..968540,968569..968682,968722..968829,969013..969087,969116..969183,969254..969327,969359..969405,969503..969821,969851..969955,969986..970238,970271..970340,970370..970553,970583..970655,970685..970849,970889..971008,971065..971143)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.37 - score = 62.96; uncharacterized protein 971143 3863165 TA08660 Theileria annulata uncharacterized protein XP_953142.1 968427 R 5874 CDS TA08665 3863166 join(971835..972047,972078..972176) 4 1 NC_011098.1 Tap349h10.p1c.cand.195 - score = 12.90; SMART pfam:Ribosomal_L44 (PF00935) at aa 18-94, E()=1.60e-42; 60S ribosomal protein L44, putative 972176 3863166 TA08665 Theileria annulata 60S ribosomal protein L44, putative XP_953143.1 971835 D 5874 CDS TA08670 3863167 join(973089..973517,973547..974923) 4 1 NC_011098.1 Tap349h10.p1c.cand.196 - score = 32.56; SMART 8 transmembrane domains, at aa 73-95, 110-132, 152-174, 194-216, 390-412, 471-493, 514-536 and 564-586; 9 probable transmembrane helices predicted for TA08670 by TMHMM2.0 at aa 10-32, 73-95, 110-132, 152-174, 194-216, 390-412, 471-493, 514-536 and 564-586; Signal peptide predicted for TA08670 by SignalP 2.0 HMM (Signal peptide probability 0.854, signal anchor probability 0.145) with cleavage site probability 0.276 between residues 22 and 23; uncharacterized protein 974923 3863167 TA08670 Theileria annulata uncharacterized protein XP_953144.1 973089 D 5874 CDS TA08675 3863168 complement(975072..978197) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.36 - score = 105.97; SMART pfam:TPR (PF00515) at aa 78-111, E()=2.40e-03; uncharacterized protein 978197 3863168 TA08675 Theileria annulata uncharacterized protein XP_953145.1 975072 R 5874 CDS TA08680 3863169 complement(978375..980099) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.36 - score = 105.97; uncharacterized protein 980099 3863169 TA08680 Theileria annulata uncharacterized protein XP_953146.1 978375 R 5874 CDS TA08685 3863170 complement(join(981321..982355,982389..982550,982611..982919,982966..983466,983498..983559,983597..983668,983699..984002,984032..984113,984144..984252,984284..984436,984476..984560)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.35 - score = 69.83; SMART 10 WD40(SM00320) domains at aa 155-194, E()=1.30e-07; 200-238, E()=2.40e-01; 276-315, E()=2.84e+02; 318-360, E()=1.07e+01; 363-431, E()=8.62e-04; 434-473, E()=8.55e-08; 479-517, E()=5.70e+01; 520-562, E()=7.16e-10; 570-608, E()=1.92e+00; 742-782, E()=4.77e+00; pfam:PWP2 (PF04047) at aa 831-957, E()=3.60e-04; uncharacterized protein 984560 3863170 TA08685 Theileria annulata uncharacterized protein XP_953147.1 981321 R 5874 CDS TA08690 3863171 join(985158..985446,985476..985543,985591..985702,985739..985812,986035..986051,986090..986686,986727..986876,986907..987231) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA08690 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA08690 by SignalP 2.0 HMM (Signal peptide probability 0.962, signal anchor probability 0.024) with cleavage site probability 0.845 between residues 22 and 23; uncharacterized protein 987231 3863171 TA08690 Theileria annulata uncharacterized protein XP_953148.1 985158 D 5874 CDS TA08695 3863172 join(987405..987622,987659..987867,987896..987982,988016..988176,988207..988379,988397..988476,988508..988641,988658..988710,988736..988898,988907..989251) 4 1 NC_011098.1 uncharacterized protein 989251 3863172 TA08695 Theileria annulata uncharacterized protein XP_953149.1 987405 D 5874 CDS TA08700 3863173 join(989448..989624,989653..989721,989750..989824,989854..989967,990000..990081,990113..990199,990229..990329) 4 1 NC_011098.1 Tap349h10.p1c.cand.198 - score = 25.77; SMART SprT (SM00371) at aa 20-187, E()=9.94e-30; uncharacterized protein 990329 3863173 TA08700 Theileria annulata uncharacterized protein XP_953150.1 989448 D 5874 CDS TA08705 3863174 complement(join(990394..991554,991579..991587)) 4 1 NC_011098.1 SMART pfam:GST_C (PF00043) at aa 81-189, E()=3.60e-02; pfam:EF1G_domain (PF00647) at aa 225-335, E()=6.20e-28; elongation factor 1-gamma, putative 991587 3863174 TA08705 Theileria annulata elongation factor 1-gamma, putative XP_953151.1 990394 R 5874 CDS TA08710 3863175 992434..993072 4 1 NC_011098.1 Tap349h10.p1c.cand.199 - score = 20.44; SMART pfam:Ribosomal_L6e (PF01159) at aa 81-212, E()=6.40e-18; 60S ribosomal protein L6, putative 993072 3863175 TA08710 Theileria annulata 60S ribosomal protein L6, putative XP_953152.1 992434 D 5874 CDS TA08725 3863178 complement(join(993196..993447,993515..994702,994732..994888,994919..995019,995123..995500)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.32 - score = 70.32; SMART AAA (SM00382) at aa 241-377, E()=1.96e-19; pfam:Peptidase_M41 (PF01434) at aa 434-646, E()=7.60e-73; 1 probable transmembrane helix predicted for TA08725 by TMHMM2.0 at aa 167-184; metallopeptidase, putative 995500 3863178 TA08725 Theileria annulata metallopeptidase, putative XP_953153.1 993196 R 5874 CDS TA08730 3863179 complement(join(995631..995728,995760..995899,995930..996110,996140..996211,996241..996706,996737..996934,996962..997531)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.31 - score = 50.81; uncharacterized protein 997531 3863179 TA08730 Theileria annulata uncharacterized protein XP_953154.1 995631 R 5874 CDS TA08735 3863180 join(997803..997893,997929..998113,998145..998235,998266..998405,998438..998480,998510..998624,998654..998716,998751..999609) 4 1 NC_011098.1 Tap349h10.p1c.cand.200 - score = 66.23; SMART ZnF_ZZ (SM00291) at aa 358-404, E()=2.81e-02; uncharacterized protein 999609 3863180 TA08735 Theileria annulata uncharacterized protein XP_953155.1 997803 D 5874 CDS TA08740 3863181 complement(join(999884..999949,999979..1000304,1000334..1000447,1000491..1000590,1000620..1000831,1000873..1000978)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.30 - score = 40.07; uncharacterized protein 1000978 3863181 TA08740 Theileria annulata uncharacterized protein XP_953156.1 999884 R 5874 CDS TA08745 3863182 join(1001293..1001355,1001389..1001673,1001704..1002001,1002031..1002166,1002199..1002335,1002368..1002498,1002530..1002650,1002696..1002727) 4 1 NC_011098.1 Tap349h10.p1c.cand.201 - score = 50.18; SMART pfam:PH (PF00169) at aa 219-313, E()=3.30e-03; Signal peptide predicted for TA08745 by SignalP 2.0 HMM (Signal peptide probability 0.973, signal anchor probability 0.013) with cleavage site probability 0.946 between residues 22 and 23; uncharacterized protein 1002727 3863182 TA08745 Theileria annulata uncharacterized protein XP_953157.1 1001293 D 5874 CDS TA08750 3863183 join(1002982..1003743,1003775..1006282) 4 1 NC_011098.1 Tap349h10.p1c.cand.202 - score = 84.04; SMART pfam:SMC_N (PF02463) at aa 4-186, E()=1.70e-03; pfam:DNA_pol3_beta (PF00712) at aa 783-888, E()=7.90e-02; pfam:SMC_C (PF02483) at aa 872-1061, E()=1.90e-03; chromosome maintenance protein (SMC5 homologue), putative 1006282 3863183 TA08750 Theileria annulata chromosome maintenance protein (SMC5 homologue), putative XP_953158.1 1002982 D 5874 CDS TA08755 3863184 1006739..1009516 4 1 NC_011098.1 Tap349h10.p1c.cand.203 - score = 58.41; SMART DEXDc (SM00487) at aa 247-453, E()=7.55e-31; HELICc (SM00490) at 485-566, E()=1.03e-23; DNA helicase (SGS1 homologue), putative 1009516 3863184 TA08755 Theileria annulata DNA helicase (SGS1 homologue), putative XP_953159.1 1006739 D 5874 CDS TA08760 3863185 complement(join(1009608..1009707,1009746..1009899,1009940..1009991,1010021..1010119)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.29 - score = 20.36; uncharacterized protein 1010119 3863185 TA08760 Theileria annulata uncharacterized protein XP_953160.1 1009608 R 5874 CDS TA08765 3863186 complement(join(1010225..1010331,1010363..1010786,1010818..1010994,1011024..1011614,1011645..1011848,1011878..1012428,1012471..1012693)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.28 - score = 67.72; uncharacterized protein 1012693 3863186 TA08765 Theileria annulata uncharacterized protein XP_953161.1 1010225 R 5874 CDS TA08770 3863187 complement(1012866..1013591) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.27 - score = 19.88; uncharacterized protein 1013591 3863187 TA08770 Theileria annulata uncharacterized protein XP_953162.1 1012866 R 5874 CDS TA08775 3863188 complement(join(1013675..1013899,1013934..1014094,1014126..1014220,1014250..1014316,1014346..1014491,1014522..1014615,1014644..1015152,1015184..1015458)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.26 - score = 52.02; SMART pfam:DiHfolate_red (P00186) at aa 10-197, E()=2.00e-28; pfam:thymidilat_synt (PF00303) at aa 238-523, E()=3.60e-195; bifunctional dihydrofolate reductase/thymidilate synthase, putative 1015458 3863188 TA08775 Theileria annulata bifunctional dihydrofolate reductase/thymidilate synthase, putative XP_953163.1 1013675 R 5874 CDS TA08780 3863189 complement(join(1015659..1015752,1015783..1015913)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.25 - score = 9.84; SMART 1 transmembrane domain at aa 24-41; 1 probable transmembrane helix predicted for TA08780 by TMHMM2.0 at aa 24-41; uncharacterized protein 1015913 3863189 TA08780 Theileria annulata uncharacterized protein XP_953164.1 1015659 R 5874 CDS TA08785 3863190 join(1016596..1016776,1016816..1017510,1017541..1017628,1017659..1017738,1017796..1017922,1017952..1018186,1018219..1018433,1018463..1018603,1018633..1018871,1018901..1019147,1019178..1019254,1019286..1019423) 4 1 NC_011098.1 Tap349h10.p1c.cand.204 - score = 69.41; SMART STYKc (SM00221) at aa 393-647, E()=5.49e-09; protein kinase, putative 1019423 3863190 TA08785 Theileria annulata protein kinase, putative XP_953165.1 1016596 D 5874 CDS TA08790 3863191 1019723..1024360 4 1 NC_011098.1 Tap349h10.p1c.cand.205 - score = 120.63; SMART 2 SANT (SM00717) domains at aa 1162-1210, E()=1.27e-06; 1492-1542, E()=7.94e-08; uncharacterized protein 1024360 3863191 TA08790 Theileria annulata uncharacterized protein XP_953166.1 1019723 D 5874 CDS TA08795 3863192 join(1024625..1024738,1024834..1026191,1026222..1026325,1026356..1026513) 4 1 NC_011098.1 Tap349h10.p1c.cand.205 - score = 120.63; uncharacterized protein 1026513 3863192 TA08795 Theileria annulata uncharacterized protein XP_953167.1 1024625 D 5874 CDS TA08800 3863193 join(1026805..1027810,1027840..1027968,1028001..1028082,1028112..1028270,1028300..1028391,1028426..1028560,1028591..1028719,1028754..1028861,1028892..1029082,1029112..1029628,1029661..1029950) 4 1 NC_011098.1 Tap349h10.p1c.cand.206 - score = 75.36; SMART 1 transmembrane domain at aa 208-230; MCM (SM00350) at aa 310-861, E()=2.61e-20; 2 probable transmembrane helices predicted for TA08800 by TMHMM2.0 at aa 208-230 and 322-341; DNA replication protein (MCM homologue), putative 1029950 3863193 TA08800 Theileria annulata DNA replication protein (MCM homologue), putative XP_953168.1 1026805 D 5874 CDS TA08805 3863194 join(1030060..1030071,1030108..1030214,1030244..1030466,1030499..1030653,1030684..1030720,1030751..1030820,1030852..1030948,1030977..1031077,1031109..1031256,1031287..1031344,1031375..1031473,1031504..1031597,1031626..1031862,1031893..1031997,1032029..1032137,1032189..1032312) 4 1 NC_011098.1 Tap349h10.p1c.cand.207 - score = 66.61; uncharacterized protein 1032312 3863194 TA08805 Theileria annulata uncharacterized protein XP_953169.1 1030060 D 5874 CDS TA08810 3863195 join(1032320..1032616,1032646..1032780) 4 1 NC_011098.1 uncharacterized protein 1032780 3863195 TA08810 Theileria annulata uncharacterized protein XP_953170.1 1032320 D 5874 CDS TA08815 3863196 complement(join(1032859..1033272,1033304..1033794,1033826..1034048,1034080..1034203,1034234..1034360,1034390..1034630)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.24 - score = 61.44; SMART pfam:GTP_EFTU (PF00009) at aa 100-334, E()=6.10e-80; pfam:GTP_EFTU_D2 (PF03144) at aa 351-420, E()=4.20e-07; pfam:GTP_EFTU_D3 (PF03143) at aa 425-536, E()=4.20e-11; elongation factor subunit (either EF1 or release factor), putative 1034630 3863196 TA08815 Theileria annulata elongation factor subunit (either EF1 or release factor), putative XP_953171.1 1032859 R 5874 CDS TA08820 3863197 join(1034910..1034939,1034971..1035045,1035082..1035345,1035376..1035447,1035475..1035546,1035577..1035959,1036028..1036211) 4 1 NC_011098.1 Tap349h10.p1c.cand.208 - score = 35.31; SMART RING (SM00184) at aa 9-46, E()=2.80e-08; uncharacterized protein 1036211 3863197 TA08820 Theileria annulata uncharacterized protein XP_953172.1 1034910 D 5874 CDS TA08835 3863200 complement(join(1036770..1036939,1036981..1037071,1037101..1037289,1037321..1037579,1037609..1037817)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.23 - score = 24.30; SMART 4 LRR domains (SM00370) at aa 71-96, E()=1.62e+01; 102-127, E()=7.48e+01; 216-241, E()=3.67e+02; 265-289, E()=3.89e+02; uncharacterized protein 1037817 3863200 TA08835 Theileria annulata uncharacterized protein XP_953173.1 1036770 R 5874 CDS TA08840 3863201 complement(join(1037995..1040741,1040772..1040897,1040927..1041211,1041242..1041439,1041470..1041689)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.22 - score = 88.36; SMART 3 EFh domains (SM00054) at aa 62-90, E()=2.44e+01; 98-126, E()=6.88e-01; 413-441, E()=3.64e+01; ZnF_NFX (SM00438) at aa 581-606, E()=0.00e+00; PH (SM00233) at aa 718-818, E()=1.15e-13; S_TKc (SM00220) at aa 824-1080, E()=4.00e-96; uncharacterized protein 1041689 3863201 TA08840 Theileria annulata uncharacterized protein XP_953174.1 1037995 R 5874 CDS TA08845 3863202 join(1042281..1042440,1042490..1042582,1042612..1042683,1042714..1042963,1042995..1043079,1043109..1043177,1043209..1043459,1043492..1043667,1043703..1049011) 4 1 NC_011098.1 Tap349h10.p1c.cand.209 - score = 133.99; SMART ZnF_UBR1 (SM00396) at aa 57-126, E()=3.93e-15; RING (SM00184) at aa 983-1077, E()=2.93e-02; ubiquitin protein ligase E3 component (N-recognin), putative 1049011 3863202 TA08845 Theileria annulata ubiquitin protein ligase E3 component (N-recognin), putative XP_953175.1 1042281 D 5874 CDS TA08850 3863203 join(1049152..1049255,1049322..1049892) 4 1 NC_011098.1 uncharacterized protein 1049892 3863203 TA08850 Theileria annulata uncharacterized protein XP_953176.1 1049152 D 5874 CDS TA08855 3863204 complement(join(1050117..1050353,1050448..1050629,1050659..1050755,1050828..1052126,1052156..1052360,1052391..1057516)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.21 - score = 124.65; SMART 2 transmembrane domains 1706-1728 and 1910-1932; 2 probable transmembrane helices predicted for TA08855 by TMHMM2.0 at aa 1706-1728 and 1910-1932; uncharacterized protein 1057516 3863204 TA08855 Theileria annulata uncharacterized protein XP_953177.1 1050117 R 5874 CDS TA08860 3863205 join(1057825..1059699,1059730..1060159,1060188..1060288) 4 1 NC_011098.1 Tap349h10.p1c.cand.210 - score = 45.26; uncharacterized protein 1060288 3863205 TA08860 Theileria annulata uncharacterized protein XP_953178.1 1057825 D 5874 CDS TA08865 3863206 complement(join(1060470..1060805,1060834..1060929,1060989..1061106,1061170..1061288,1061326..1061428,1061478..1061747,1061803..1061914,1062004..1062139)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.20 - score = 13.46; SMART pfam:Mannosyl_trans (PF05007) at aa 141-417, E()=2.60e-35; 8 probable transmembrane helices predicted for TA08865 by TMHMM2.0 at aa 20-42, 140-162, 169-191, 227-249, 287-309, 329-346, 353-375 and 390-412; mannosyltransferase, putative 1062139 3863206 TA08865 Theileria annulata mannosyltransferase, putative XP_953179.1 1060470 R 5874 CDS TA08875 3863207 1062928..1063878 4 1 NC_011098.1 Tap349h10.p1c.cand.211 - score = 19.92; uncharacterized protein 1063878 3863207 TA08875 Theileria annulata uncharacterized protein XP_953180.1 1062928 D 5874 CDS TA08880 3863208 join(1064456..1064605,1064639..1065128,1065191..1065532,1065575..1065726) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA08880 by TMHMM2.0 at aa 20-39; Signal anchor predicted for TA08880 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues 40 and 41; uncharacterized protein 1065726 3863208 TA08880 Theileria annulata uncharacterized protein XP_953181.1 1064456 D 5874 CDS TA08890 3863210 join(1065979..1066072,1066114..1066836,1066893..1067404,1067435..1067521,1067553..1067604,1067668..1067834,1067881..1068498) 4 1 NC_011098.1 Tap349h10.p1c.cand.213 - score = 59.06; SMART pfam:Kelch (PF01344) at aa 365-421, E()=4.00e-05; uncharacterized protein 1068498 3863210 TA08890 Theileria annulata uncharacterized protein XP_953182.1 1065979 D 5874 CDS TA08895 3863211 complement(join(1068685..1068806,1068837..1069041)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.19 - score = 11.24; SMART pfam:RNA_POL_M_15KD (PF02150) at aa 4-55, E()=6.50e-02; ZnF_C2C2 (SM00440) at aa 69-108, E()=7.08e-20; RNA polymerase small subunit, putative 1069041 3863211 TA08895 Theileria annulata RNA polymerase small subunit, putative XP_953183.1 1068685 R 5874 CDS TA08900 3863212 complement(join(1069110..1071564,1071637..1071705,1071752..1071852,1071896..1071970)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.18 - score = 64.48; SMART XPGN (SM00485) at aa 64-159, E()=5.25e-13; XPGI (SM00484) at aa 597-665, E()=9.56e-25; HhH2 (SM00279) at aa 667-700, E()=1.02e-10; endonuclease (xp-g/RAD2 homologue), putative 1071970 3863212 TA08900 Theileria annulata endonuclease (xp-g/RAD2 homologue), putative XP_953184.1 1069110 R 5874 CDS TA08905 3863135 1072350..1072970 4 1 NC_011098.1 Tap349h10.p1c.cand.214 - score = 13.22; uncharacterized protein 1072970 3863135 TA08905 Theileria annulata uncharacterized protein XP_953185.1 1072350 D 5874 CDS TA08910 3863136 join(1073001..1073190,1073242..1073399) 4 1 NC_011098.1 Tap349h10.p1c.cand.215 - score = 11.51; uncharacterized protein 1073399 3863136 TA08910 Theileria annulata uncharacterized protein XP_953186.1 1073001 D 5874 CDS TA08915 3863137 join(1075205..1075637,1075698..1076347) 4 1 NC_011098.1 Tap349h10.p1c.cand.217 - score = 31.95; uncharacterized protein 1076347 3863137 TA08915 Theileria annulata uncharacterized protein XP_953187.1 1075205 D 5874 CDS TA08920 3863138 1076563..1079565 4 1 NC_011098.1 Tap349h10.p1c.cand.218 - score = 44.95; SMART 1 transmembrane domain at aa 227-249; 1 probable transmembrane helix predicted for TA08920 by TMHMM2.0 at aa 227-249; uncharacterized protein 1079565 3863138 TA08920 Theileria annulata uncharacterized protein XP_953188.1 1076563 D 5874 CDS TA08925 3863139 complement(1079732..1081138) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.17 - score = 23.28; SMART 2 transmembrane domains at aa 138-155 and 432-454; 2 probable transmembrane helices predicted for TA08925 by TMHMM2.0 at aa 138-155 and 432-454; uncharacterized protein 1081138 3863139 TA08925 Theileria annulata uncharacterized protein XP_953189.1 1079732 R 5874 CDS TA08930 3863140 join(1081677..1081764,1081800..1081862,1081952..1082847) 4 1 NC_011098.1 Tap349h10.p1c.cand.219 - score = 29.14; SMART RING (SM00184) at aa 284-334, E()=4.73e-06; uncharacterized protein 1082847 3863140 TA08930 Theileria annulata uncharacterized protein XP_953190.1 1081677 D 5874 CDS TA08935 3863141 complement(join(1082960..1083049,1083087..1083194,1083232..1083354)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.16 - score = 14.63; SMART 2 transmembrane domains at aa 5-27 and 34-56; Apicoplast targetting peptide predicted by the PlasmoAP tool; 2 probable transmembrane helices predicted for TA08935 by TMHMM2.0 at aa 5-27 and 34-56; Signal anchor predicted for TA08935 by SignalP 2.0 HMM (Signal peptide probability 0.009, signal anchor probability 0.795) with cleavage site probability 0.006 between residues 24 and 25; uncharacterized protein 1083354 3863141 TA08935 Theileria annulata uncharacterized protein XP_953191.1 1082960 R 5874 CDS TA08945 3863143 complement(join(1083421..1083530,1083560..1083665,1083695..1084092,1084140..1084247,1084283..1084484,1084526..1084711,1084742..1085071)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.15 - score = 51.07; SMART 3 RRM (SM00360) domains at aa 155-228, E()=1.13e-22; 302-376, E()=1.36e-07; 389-465, E()=9.65e-08; RNA binding protein, putative 1085071 3863143 TA08945 Theileria annulata RNA binding protein, putative XP_953192.1 1083421 R 5874 CDS TA08950 3863144 join(1085865..1086072,1086104..1087411,1087478..1088019,1088077..1088379,1088438..1088788,1088847..1088945,1088998..1089822) 4 1 NC_011098.1 Tap349h10.p1c.cand.220 - score = 85.64; SMART pfam:CAS_CSE1 (PF03378) at aa 769-1203, E()=8.50e-11; importin-alpha, putative 1089822 3863144 TA08950 Theileria annulata importin-alpha, putative XP_953193.1 1085865 D 5874 CDS TA08955 3863145 join(1090292..1090311,1090378..1090945) 4 1 NC_011098.1 Tap349h10.p1c.cand.221 - score = 16.68; SMART SAR (SM00178) at aa 5-191, E()=1.50e-82; small GTPase, putative 1090945 3863145 TA08955 Theileria annulata small GTPase, putative XP_953194.1 1090292 D 5874 CDS TA08960 3863146 join(1091082..1091209,1091283..1091496,1091567..1091794) 4 1 NC_011098.1 Tap349h10.p1c.cand.221 - score = 16.68; SMART RRM (SM00360) at aa 98-153, E()=8.47e-07; uncharacterized protein 1091794 3863146 TA08960 Theileria annulata uncharacterized protein XP_953195.1 1091082 D 5874 CDS TA08965 3863147 complement(join(1091824..1091937,1091997..1092489,1092537..1092604,1092674..1095115)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.14 - score = 69.83; uncharacterized protein 1095115 3863147 TA08965 Theileria annulata uncharacterized protein XP_953196.1 1091824 R 5874 CDS TA08970 3863148 complement(join(1095206..1095499,1095554..1095686,1095719..1095835,1095867..1095976)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.13 - score = 23.09; uncharacterized protein 1095976 3863148 TA08970 Theileria annulata uncharacterized protein XP_953197.1 1095206 R 5874 CDS TA08975 3863149 join(1096407..1096737,1096767..1097248) 4 1 NC_011098.1 Tap349h10.p1c.cand.222 - score = 17.65; SMART PHB (SM00244) at aa 93-258, E()=6.41e-01; 1 probable transmembrane helix predicted for TA08975 by TMHMM2.0 at aa 81-103; prohibitin-like protein, putative 1097248 3863149 TA08975 Theileria annulata prohibitin-like protein, putative XP_953198.1 1096407 D 5874 CDS TA08980 3863150 join(1098273..1098877,1099012..1099485,1099546..1099672) 4 1 NC_011098.1 SMART pfam:CRAL_TRIO_N (PF03765) at aa 111-172, E()=1.00e-01; SEC14 (SM00516) at aa 177-335, E()=9.15e-09; uncharacterized protein 1099672 3863150 TA08980 Theileria annulata uncharacterized protein XP_953199.1 1098273 D 5874 CDS TA08985 3863151 join(1099778..1100714,1100745..1100844,1100877..1100955,1100996..1101060,1101143..1101760,1101809..1102088) 4 1 NC_011098.1 Tap349h10.p1c.cand.224 - score = 59.76; SMART 1 transmembrane domain at aa 241-263; 1 probable transmembrane helix predicted for TA08985 by TMHMM2.0 at aa 241-263; uncharacterized protein 1102088 3863151 TA08985 Theileria annulata uncharacterized protein XP_953200.1 1099778 D 5874 CDS TA08990 3863152 complement(join(1102185..1102256,1102292..1102345,1102376..1102446,1102485..1102594,1102624..1102670,1102719..1102750,1102783..1102847,1102912..1103136,1103210..1103278,1103348..1103397,1103526..1103624)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.12 - score = 12.12; SMART ZnF_NFX (SM00438) at aa 1-13, E()=0.00e+00; pfam:UPF0103 (PF01875) at aa 36318, E()=3.40e-87; pfam:LIgB (PF02900) at aa 58-309, E()=4.10e-02; 1 probable transmembrane helix predicted for TA08990 by TMHMM2.0 at aa 20-39; uncharacterized protein 1103624 3863152 TA08990 Theileria annulata uncharacterized protein XP_953201.1 1102185 R 5874 CDS TA09000 3863213 complement(join(1103687..1103772,1103824..1103865,1103932..1103992,1104062..1104202,1104233..1105270)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.11 - score = 33.54; SMART S_TKc (SM00220) at aa 92-391, E()=7.14e-93; serine/threonine protein kinase, putative 1105270 3863213 TA09000 Theileria annulata serine/threonine protein kinase, putative XP_953202.1 1103687 R 5874 CDS TA09005 3863214 join(1105643..1105706,1105738..1105890,1105928..1106252,1106307..1106439,1106503..1106694) 4 1 NC_011098.1 Tap349h10.p1c.cand.225 - score = 18.85; SMART pfam:mito_carr (PF00153) at aa 97-185, E()=9.60e-13 and 195-288, E()=1.60e-07; 2 transmembrane domains at aa 13-35 and 70-92; 3 probable transmembrane helices predicted for TA09005 by TMHMM2.0 at aa 13-35, 70-92 and 193-215; mitochondrial carrier protein, putative 1106694 3863214 TA09005 Theileria annulata mitochondrial carrier protein, putative XP_953203.1 1105643 D 5874 CDS TA09010 3863215 join(1107007..1107708,1107776..1107865) 4 1 NC_011098.1 Tap349h10.p1c.cand.226 - score = 19.34; SMART BTB (SM00225) at aa 58-178, E()-3.15e-04; uncharacterized protein 1107865 3863215 TA09010 Theileria annulata uncharacterized protein XP_953204.1 1107007 D 5874 CDS TA09015 3863216 complement(join(1107881..1108457,1108516..1108599,1108630..1108685,1108719..1108773,1108804..1108985,1109049..1109132,1109186..1109220,1109255..1109367,1109477..1109577)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.10 - score = 42.30; SMART RING (SM00184) at aa 9-52, E()=2.76e-07; uncharacterized protein 1109577 3863216 TA09015 Theileria annulata uncharacterized protein XP_953205.1 1107881 R 5874 CDS TA09020 3863217 join(1109813..1109894,1109926..1110272) 4 1 NC_011098.1 1 probable transmembrane helix predicted for TA09020 by TMHMM2.0 at aa 124-141; uncharacterized protein 1110272 3863217 TA09020 Theileria annulata uncharacterized protein XP_953206.1 1109813 D 5874 CDS TA09025 3863218 join(1110299..1110322,1110359..1110407,1110441..1110511,1110541..1110756,1110813..1111084,1111123..1111295,1111352..1111801,1111832..1112549,1112579..1112636,1112671..1112757,1112822..1112948,1113018..1113172) 4 1 NC_011098.1 Tap349h10.p1c.cand.227 - score = 92.01; uncharacterized protein 1113172 3863218 TA09025 Theileria annulata uncharacterized protein XP_953207.1 1110299 D 5874 CDS TA09030 3863219 join(1113561..1117232,1117284..1117400,1117441..1117528,1117571..1117920,1117953..1118534) 4 1 NC_011098.1 Tap349h10.p1c.cand.228 - score = 137.28; SMART pfam:TPR (PF00515) at aa 313-346, E()=4.10e-04; FH2 (SM00498) at aa 1160-1602, E()=7.35e-26; uncharacterized protein 1118534 3863219 TA09030 Theileria annulata uncharacterized protein XP_953208.1 1113561 D 5874 CDS TA09035 3863220 complement(join(1119228..1119440,1119800..1119922,1119951..1120022)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.8 - score = 12.67; SMART pfam:SGS (PF05002) at aa 32-80, E()=1.20e-02; uncharacterized protein 1120022 3863220 TA09035 Theileria annulata uncharacterized protein XP_953209.1 1119228 R 5874 CDS TA09040 3863221 join(1120814..1120856,1120910..1121433,1121464..1121580,1121631..1121818,1121881..1122001) 4 1 NC_011098.1 Tap349h10.p1c.cand.229 - score = 72.42; uncharacterized protein 1122001 3863221 TA09040 Theileria annulata uncharacterized protein XP_953210.1 1120814 D 5874 CDS TA09045 3863222 join(1122190..1122464,1122542..1122881,1122923..1123234,1123289..1123489,1123558..1123681,1123732..1123792,1123849..1124005,1124037..1124147) 4 1 NC_011098.1 Tap349h10.p1c.cand.229 - score = 72.42; SMART pfam:peptidase_M17 (PF00883) at aa 214-520, E()=8.90e-124; cytosol aminopeptidase, putative 1124147 3863222 TA09045 Theileria annulata cytosol aminopeptidase, putative XP_953211.1 1122190 D 5874 CDS TA09055 3863224 1124468..1125187 4 1 NC_011098.1 Tap349h10.p1c.cand.230 - score = 11.70; uncharacterized protein 1125187 3863224 TA09055 Theileria annulata uncharacterized protein XP_953212.1 1124468 D 5874 CDS TA09060 3863225 complement(join(1125256..1125503,1125575..1126465,1126507..1127218)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.7 - score = 47.44; SMART DEXDc (SM00487) at aa 207-414, E()=1.43e-54; HELICc (SM00490) at aa 451-532, E()=1.28e-33; DEAD-box family RNA-dependent helicase, putative 1127218 3863225 TA09060 Theileria annulata DEAD-box family RNA-dependent helicase, putative XP_953213.1 1125256 R 5874 CDS TA09065 3863226 join(1128315..1128441,1128649..1129376,1129407..1129481) 4 1 NC_011098.1 Tap349h10.p1c.cand.231 - score = 27.09; SMART pfam:HABP4_PAI-RBP1 (PF04774) at aa 102-258, E()=1.30e-04; uncharacterized protein 1129481 3863226 TA09065 Theileria annulata uncharacterized protein XP_953214.1 1128315 D 5874 CDS TA09070 3863227 complement(join(1129520..1129679,1129711..1129811,1129857..1130123,1130212..1130484)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.6 - score = 31.87; uncharacterized protein 1130484 3863227 TA09070 Theileria annulata uncharacterized protein XP_953215.1 1129520 R 5874 CDS TA09075 3863228 complement(join(1130600..1130671,1130702..1130770,1130800..1130832,1130898..1131005,1131048..1131276,1131305..1131443,1131638..1131743,1131813..1131905)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.6 - score = 31.87; methylase-like protein, putative 1131905 3863228 TA09075 Theileria annulata methylase-like protein, putative XP_953216.1 1130600 R 5874 CDS TA09080 3863229 complement(1131998..1132576) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.5 - score = 11.67; SMART 2 transmembrane domains at aa 5-27, 47-69; 2 probable transmembrane helices predicted for TA09080 by TMHMM2.0 at aa 5-27 and 47-69; Signal anchor predicted for TA09080 by SignalP 2.0 HMM (Signal peptide probability 0.069, signal anchor probability 0.899) with cleavage site probability 0.022 between residues 30 and 31; uncharacterized protein 1132576 3863229 TA09080 Theileria annulata uncharacterized protein XP_953217.1 1131998 R 5874 CDS TA09085 3863230 complement(join(1132842..1133029,1133062..1133278,1133333..1133383)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.4 - score = 14.09; SMART pfam:Sybindin (PF04099) at aa 1-150, E()=1.50e-29; sybindin, putative 1133383 3863230 TA09085 Theileria annulata sybindin, putative XP_953218.1 1132842 R 5874 CDS TA09090 3863231 1134161..1135525 4 1 NC_011098.1 Tap349h10.p1c.cand.232 - score = 24.38; uncharacterized protein 1135525 3863231 TA09090 Theileria annulata uncharacterized protein XP_953219.1 1134161 D 5874 CDS TA09095 3863232 1135879..1136181 4 1 NC_011098.1 SMART 2 transmembrane domains at aa 21-43 and 58-80; 2 probable transmembrane helices predicted for TA09095 by TMHMM2.0 at aa 21-43 and 58-80; uncharacterized protein 1136181 3863232 TA09095 Theileria annulata uncharacterized protein XP_953220.1 1135879 D 5874 CDS TA09100 3863233 join(1136685..1136843,1136897..1137092,1137141..1137236,1137286..1137624,1137729..1138414,1138484..1139008) 4 1 NC_011098.1 Tap349h10.p1c.cand.233 - score = 41.45; SMART pfam:PI3_PI4_kinase (PF00454) at aa 149-474, E()=5.20e-40; uncharacterized protein 1139008 3863233 TA09100 Theileria annulata uncharacterized protein XP_953221.1 1136685 D 5874 CDS TA09105 3863234 complement(join(1139079..1141204,1141237..1141435)) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.3 - score = 40.68; SMART pfam:tRNA-synt_1 (PF00133) at aa 44-535, E()=2.10e-11; valyl-tRNA synthetase, putative 1141435 3863234 TA09105 Theileria annulata valyl-tRNA synthetase, putative XP_953222.1 1139079 R 5874 CDS TA09110 3863235 complement(1141475..1145764) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.2 - score = 58.21; SMART 5 PHD (SM00249) domains at aa 100-166, E()=8.57e+00; 243-315, E()=9.56e-02; 902-948, E()=7.76e-02; 1062-1110, E()=5.88e-02; 1323-1374, E()=1.19e-02; ZnF_NFX (SM00438) at aa 1151-1170, E()=0.00e+00; uncharacterized protein 1145764 3863235 TA09110 Theileria annulata uncharacterized protein XP_953223.1 1141475 R 5874 CDS TA09115 3863236 join(1146378..1146620,1146695..1146802,1146833..1147043,1147110..1147262,1147341..1147825) 4 1 NC_011098.1 Tap349h10.p1c.cand.234 - score = 62.38; SMART 1 transmembrane at aa 13-35; 1 probable transmembrane helix predicted for TA09115 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09115 by SignalP 2.0 HMM (Signal peptide probability 0.179, signal anchor probability 0.776) with cleavage site probability 0.092 between residues 29 and 30; uncharacterized protein 1147825 3863236 TA09115 Theileria annulata uncharacterized protein XP_953224.1 1146378 D 5874 CDS TA09120 3863237 join(1147938..1148148,1148220..1148406,1148496..1148785,1148908..1149038,1149117..1149234,1149326..1149549) 4 1 NC_011098.1 SMART 1 transmembrane domain at aa 330-352; 1 probable transmembrane helix predicted for TA09120 by TMHMM2.0 at aa 330-352; uncharacterized protein 1149549 3863237 TA09120 Theileria annulata uncharacterized protein XP_953225.1 1147938 D 5874 CDS TA09125 3863238 complement(1149678..1150421) 4 1 NC_011098.1 Tap349h10.p1c.C.cand.1 - score = 18.74; SMART small_GTPase (SM00010) at aa 2-211, E()=1.73e-08; 46-238, E()=1.40e-03; small GTPase (Rab family member), putative 1150421 3863238 TA09125 Theileria annulata small GTPase (Rab family member), putative XP_953226.1 1149678 R 5874 CDS TA09130 3863239 join(1150985..1151413,1151460..1152548) 4 1 NC_011098.1 Tap349h10.p1c.cand.235 - score = 10.78; uncharacterized protein 1152548 3863239 TA09130 Theileria annulata uncharacterized protein XP_953227.1 1150985 D 5874 CDS TA11045 3862865 complement(join(1152586..1152653,1152770..1152824,1152855..1152927,1153114..1153209,1153240..1153349,1153525..1153628,1153729..1153826,1153857..1153930,1153996..1154111,1154190..1154334,1154493..1154513)) 4 1 NC_011098.1 SMART CYCLIN (SM00385) at aa 78-162, E()=3.99e-05; cyclin, putative 1154513 3862865 TA11045 Theileria annulata cyclin, putative XP_953228.1 1152586 R 5874 CDS TA11040 3862864 join(1154724..1155330,1155505..1156325,1156454..1156768) 4 1 NC_011098.1 uncharacterized protein 1156768 3862864 TA11040 Theileria annulata uncharacterized protein XP_953229.1 1154724 D 5874 CDS TA11035 3862863 complement(join(1156787..1156978,1157034..1157159)) 4 1 NC_011098.1 uncharacterized protein 1157159 3862863 TA11035 Theileria annulata uncharacterized protein XP_953230.1 1156787 R 5874 CDS TA11030 3862862 1158109..1159743 4 1 NC_011098.1 Tap579b07.q1c.C.cand.2 - score = 34.16; SMART pfam:CAF1 (PF04857) at aa 8-240, E()=1.20e-116; mRNA turnover/deadenylation component (POP2 homologue), putative 1159743 3862862 TA11030 Theileria annulata mRNA turnover/deadenylation component (POP2 homologue), putative XP_953231.1 1158109 D 5874 CDS TA11020 3862860 join(1161926..1162090,1162121..1162219) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.3 - score = 9.75; 1 probable transmembrane helix predicted for TA11020 by TMHMM2.0 at aa 7-26; Signal peptide predicted for TA11020 by SignalP 2.0 HMM (Signal peptide probability 0.985, signal anchor probability 0.014) with cleavage site probability 0.869 between residues 23 and 24; uncharacterized protein 1162219 3862860 TA11020 Theileria annulata uncharacterized protein XP_953232.1 1161926 D 5874 CDS TA11015 3862859 join(1162530..1163436,1163600..1163819,1163876..1164670,1164834..1165410,1165476..1165625,1165661..1165873) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.4 - score = 43.90; SMART S1 (SM00316) at aa 598-671, 7.80e-02; 813-884, E()=6.70e+00; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA11015 by TMHMM2.0 at aa 7-29; Signal peptide predicted for TA11015 by SignalP 2.0 HMM (Signal peptide probability 0.622, signal anchor probability 0.327) with cleavage site probability 0.170 between residues 15 and 16; uncharacterized protein 1165873 3862859 TA11015 Theileria annulata uncharacterized protein XP_953233.1 1162530 D 5874 CDS TA11010 3862858 complement(join(1166012..1166304,1166348..1166676,1166799..1166984,1167014..1167264,1167296..1168248,1168321..1168561)) 4 1 NC_011098.1 Tap579b07.q1c.cand.148 - score = 52.44; SMART pfam:UPF0004 (PF00919) at aa 316-401, E()=1.70-31; Elp3 (SM00729) at aa 459-677, E()=1.32e-26; 1 probable transmembrane helix predicted for TA11010 by TMHMM2.0 at aa 7-29; uncharacterized protein 1168561 3862858 TA11010 Theileria annulata uncharacterized protein XP_953234.1 1166012 R 5874 CDS TA11005 3862857 1168895..1169893 4 1 NC_011098.1 Tap579b07.q1c.C.cand.5 - score = 15.89; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal peptide predicted for TA11005 by SignalP 2.0 HMM (Signal peptide probability 0.909, signal anchor probability 0.064) with cleavage site probability 0.808 between residues 20 and 21; uncharacterized protein 1169893 3862857 TA11005 Theileria annulata uncharacterized protein XP_953235.1 1168895 D 5874 CDS TA11000 3862856 complement(1169895..1172831) 4 1 NC_011098.1 Tap579b07.q1c.cand.147 - score = 61.59; SMART 9 transmembrane domains at aa 585-607, 614-636, 651-668, 677-699, 719-741, 754-772, 811-833, 854-876 and 886-908; 9 probable transmembrane helices predicted for TA11000 by TMHMM2.0 at aa 585-607, 614-636, 651-668, 677-699, 719-741, 754-772, 811-833, 854-876 and 886-908; Tpr-related protein family member, putative 1172831 3862856 TA11000 Theileria annulata Tpr-related protein family member, putative XP_953236.1 1169895 R 5874 CDS TA10995 3862855 complement(join(1172992..1173394,1173424..1173552,1173582..1173720,1173802..1174871,1174935..1175182,1175248..1175697,1175742..1176530,1176564..1176613,1176646..1176898)) 4 1 NC_011098.1 Tap579b07.q1c.cand.146 - score = 89.07; SMART pfam:tRNA-synt_1 (PF00133) at aa 13-799, E()=1.10e-06; leucyl-tRNA synthetase, putative 1176898 3862855 TA10995 Theileria annulata leucyl-tRNA synthetase, putative XP_953237.1 1172992 R 5874 CDS TA10990 3862854 1177089..1178033 4 1 NC_011098.1 Tap579b07.q1c.C.cand.6 - score = 10.11; SMART 3 pfam:mito_carr (PF00153) at aa 24-118, E()=2.00e-03; 119-217, E()=5.40e-04; 221-313, E()=7.50e-05; mitochondrial carrier protein, putative 1178033 3862854 TA10990 Theileria annulata mitochondrial carrier protein, putative XP_953238.1 1177089 D 5874 CDS TA10985 3862853 complement(join(1178116..1179390,1179420..1179581,1179612..1179869,1179923..1180258)) 4 1 NC_011098.1 Tap579b07.q1c.cand.145 - score = 152.29; SMART pfam:Cullin (PF00888) at aa 1-668, E()=6.30e-04; cullin, putative 1180258 3862853 TA10985 Theileria annulata cullin, putative XP_953239.1 1178116 R 5874 CDS TA10980 3862852 complement(1180798..1181886) 4 1 NC_011098.1 Tap579b07.q1c.cand.145 - score = 152.29; SMART 1 transmembrane domain at aa 17-39; 1 probable transmembrane helix predicted for TA10980 by TMHMM2.0 at aa 17-39; uncharacterized protein 1181886 3862852 TA10980 Theileria annulata uncharacterized protein XP_953240.1 1180798 R 5874 CDS TA10975 3862851 complement(1181900..1186336) 4 1 NC_011098.1 Tap579b07.q1c.cand.145 - score = 152.29; uncharacterized protein 1186336 3862851 TA10975 Theileria annulata uncharacterized protein XP_953241.1 1181900 R 5874 CDS TA10960 3862848 join(1186776..1186839,1186959..1187376,1187400..1187639,1187733..1188018) 4 1 NC_011098.1 SMART pfam:HesB-like (PF01521) at aa 201-293, E()=7.40e-11; 1 probable transmembrane helix predicted for TA10960 by TMHMM2.0 at aa 107-129; HesB-family member protein, putative 1188018 3862848 TA10960 Theileria annulata HesB-family member protein, putative XP_953242.1 1186776 D 5874 CDS TA10955 3862847 complement(join(1188020..1188454,1188543..1188672,1188704..1188864,1188900..1189048,1189078..1189262,1189345..1189451,1189486..1190106)) 4 1 NC_011098.1 Tap579b07.q1c.cand.144 - score = 49.40; SMART Pept_C1 (SM00645) at aa 219-467, E()=3.24e-12; Signal peptide predicted for TA10955 by SignalP 2.0 HMM (Signal peptide probability 0.913, signal anchor probability 0.000) with cleavage site probability 0.697 between residues 15 and 16; GPI-Anchor Signal predicted for TA10955 by DGPI v2.04, no cleavage site predicted; papain-family cysteine protease, putative 1190106 3862847 TA10955 Theileria annulata papain-family cysteine protease, putative XP_953243.1 1188020 R 5874 CDS TA10950 3862846 complement(1190211..1192403) 4 1 NC_011098.1 Tap579b07.q1c.cand.143 - score = 40.41; SMART pfam:RICH (PF05062) at aa 386-468, E()=8.30e-02; uncharacterized protein 1192403 3862846 TA10950 Theileria annulata uncharacterized protein XP_953244.1 1190211 R 5874 CDS TA10945 3862845 join(1193208..1193326,1193362..1193485,1193515..1193568) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.9 - score = 14.51; SMART pfam:UCR_UQCRX_QCR9 (PF05365) at aa 38-94, E()=3.30e-03; 1 probable transmembrane helix predicted for TA10945 by TMHMM2.0 at aa 52-71; uncharacterized protein 1193568 3862845 TA10945 Theileria annulata uncharacterized protein XP_953245.1 1193208 D 5874 CDS TA10940 3862844 complement(1193613..1194803) 4 1 NC_011098.1 Tap579b07.q1c.cand.142 - score = 25.73; uncharacterized protein 1194803 3862844 TA10940 Theileria annulata uncharacterized protein XP_953246.1 1193613 R 5874 CDS TA10935 3862843 join(1195725..1196510,1196564..1196914) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.10 - score = 22.61; uncharacterized protein 1196914 3862843 TA10935 Theileria annulata uncharacterized protein XP_953247.1 1195725 D 5874 CDS TA10930 3862842 complement(join(1196969..1197136,1197169..1197315,1197367..1197499,1197524..1197972)) 4 1 NC_011098.1 uncharacterized protein 1197972 3862842 TA10930 Theileria annulata uncharacterized protein XP_953248.1 1196969 R 5874 CDS TA10925 3862841 complement(join(1198075..1198225,1198258..1198419,1198449..1198847,1198877..1199012,1199043..1199409)) 4 1 NC_011098.1 Tap579b07.q1c.cand.140 - score = 30.20; SMART 1 transmembrane domain at aa 21-43; pfam:adh_short (PF00106) at aa 104-379, E()=3.30e-26; 1 probable transmembrane helix predicted for TA10925 by TMHMM2.0 at aa 21-43; Signal anchor predicted for TA10925 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.978) with cleavage site probability 0.000 between residues 33 and 34; short-chain dehydrogenase/reductase (SDR family member), putative 1199409 3862841 TA10925 Theileria annulata short-chain dehydrogenase/reductase (SDR family member), putative XP_953249.1 1198075 R 5874 CDS TA10920 3862840 complement(join(1199641..1199788,1199819..1199980,1200012..1200407,1200437..1200572,1200603..1201035)) 4 1 NC_011098.1 Tap579b07.q1c.cand.139 - score = 31.51; SMART 2 transmembrane domains at aa 53-75 and 96-118; pfam:adh_short (PF00106) at aa 137-398, E()=1.20e-20; 2 probable transmembrane helices predicted for TA10920 by TMHMM2.0 at aa 53-75 and 96-118; short-chain dehydrogenase/reductase (SDR family member), putative 1201035 3862840 TA10920 Theileria annulata short-chain dehydrogenase/reductase (SDR family member), putative XP_953250.1 1199641 R 5874 CDS TA10915 3862839 complement(join(1201314..1201947,1202014..1202734,1202767..1202953)) 4 1 NC_011098.1 Tap579b07.q1c.cand.138 - score = 49.29; SMART pfam:PK (PF00224) at aa 34-382, E()=2.50e-187; pfam:PK_C (PF02887) at aa 396-511, E()=8.00e-23; pyruvate kinase, putative 1202953 3862839 TA10915 Theileria annulata pyruvate kinase, putative XP_953251.1 1201314 R 5874 CDS TA10910 3862838 complement(join(1203388..1203559,1203589..1203745,1203803..1203858,1203887..1204010,1204042..1204138,1204168..1204241,1204272..1204458,1204494..1204644,1204673..1204831,1204871..1205097)) 4 1 NC_011098.1 Tap579b07.q1c.cand.137 - score = 53.70; SMART 3 pfam:Kelch (PF01344) domains at aa 119-168, E()=1.80e-02; 173-222, E()=8.30e-04; 372-421, E()=5.20e-05; uncharacterized protein 1205097 3862838 TA10910 Theileria annulata uncharacterized protein XP_953252.1 1203388 R 5874 CDS TA10905 3862837 complement(1205201..1207963) 4 1 NC_011098.1 Tap579b07.q1c.cand.136 - score = 60.57; SMART 9 ANK (SM00248) domains at aa 556-585, E()=5.19e+02; 589-619, E()=9.92e+02; 622-651, E()=7.71e-02; 658-687, E()=2.32e-05; 724-753, E()=1.19e+03; 758-787, E()=3.36e+02; 791-820, E()=5.62e-04; 824-853, E()=9.05e-08; 858-888, E()=1.23e+00; uncharacterized protein 1207963 3862837 TA10905 Theileria annulata uncharacterized protein XP_953253.1 1205201 R 5874 CDS TA10900 3862836 join(1208479..1208848,1208904..1209073) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.11 - score = 10.53; SMART pfam:NifU-like (PF01106) at aa 95-165, E()=3.70e-23; uncharacterized protein 1209073 3862836 TA10900 Theileria annulata uncharacterized protein XP_953254.1 1208479 D 5874 CDS TA10895 3862835 complement(join(1209112..1209259,1209292..1210841)) 4 1 NC_011098.1 uncharacterized protein 1210841 3862835 TA10895 Theileria annulata uncharacterized protein XP_953255.1 1209112 R 5874 CDS TA10890 3862834 join(1211408..1212358,1212414..1212771,1212803..1213227) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.12 - score = 44.76; SMART pfam:GTP_EFTU (PF00009) at aa 95-328, E()=2.40e-30; translation elongation factor 1-alpha, putative 1213227 3862834 TA10890 Theileria annulata translation elongation factor 1-alpha, putative XP_953256.1 1211408 D 5874 CDS TA10885 3862833 join(1214229..1214298,1214366..1214908,1214935..1215186,1215279..1215524,1215593..1216107,1216176..1220468) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.13 - score = 149.33; SMART overlapping domains; PHD (SM00249) at aa 7-69, E()=2.83e-04; 82-129, E()=4.22e-12; 157-217, E()=6.50e-04; 1403-1462, E()=7.24e-02; 1463-1530, E()=1.71e+01; RING (SM00184) at aa 8-68, E()=1.50e+00; 83-128, E()=1.45e-01; 158-216, E()=4.62e+00; ZnF_NFX (SM00438) at aa 158-175, E()=0.00e+00; DEXDc (SM00487) at aa 340-542, E()=1.23e-21; HELICc (SM00490) at aa 1011-1095, E()=1.83e-20; SWI/SNF-related chromatin remodelling factor (ISWI homologue), putative 1220468 3862833 TA10885 Theileria annulata SWI/SNF-related chromatin remodelling factor (ISWI homologue), putative XP_953257.1 1214229 D 5874 CDS TA10880 3862832 complement(join(1220754..1220865,1220972..1221218,1221285..1221549)) 4 1 NC_011098.1 SMART 1 transmembrane domain at aa 182-204; 1 probable transmembrane helix predicted for TA10880 by TMHMM2.0 at aa 182-204; Signal peptide predicted for TA10880 by SignalP 2.0 HMM (Signal peptide probability 0.968, signal anchor probability 0.000) with cleavage site probability 0.748 between residues 17 and 18; N-acetylglucosaminyl-phosphatidylinositolde-N- ace tylase 1221549 3862832 TA10880 Theileria annulata N-acetylglucosaminyl-phosphatidylinositolde-N- ace tylase XP_953258.1 1220754 R 5874 CDS TA10875 3862831 join(1224035..1224062,1224073..1224089,1224144..1224334,1224368..1224650,1224688..1224831) 4 1 NC_011098.1 SMART pfam:proteasome (PF00227) at aa 20-205, E()=1.30e-29; proteasome beta 3 subunit, putative 1224831 3862831 TA10875 Theileria annulata proteasome beta 3 subunit, putative XP_953259.1 1224035 D 5874 CDS TA10870 3862830 1225193..1226932 4 1 NC_011098.1 Tap579b07.q1c.C.cand.15 - score = 33.72; uncharacterized protein 1226932 3862830 TA10870 Theileria annulata uncharacterized protein XP_953260.1 1225193 D 5874 CDS TA10865 3862829 complement(1227087..1228826) 4 1 NC_011098.1 Tap579b07.q1c.cand.133 - score = 26.83; SMART 10 transmembrane domains at aa 21-40, 109-131, 143-165, 170-192, 205-227, 330-352, 365-387, 442-464, 483-505 and 515-537; 10 probable transmembrane helices predicted for TA10865 by TMHMM2.0 at aa 21-40, 109-131, 143-165, 170-192, 205-227, 330-352, 365-387, 442-464, 483-505 and 515-537; Signal anchor predicted for TA10865 by SignalP 2.0 HMM (Signal peptide probability 0.013, signal anchor probability 0.666) with cleavage site probability 0.003 between residues 33 and 34; Tpr-related protein family member, putative 1228826 3862829 TA10865 Theileria annulata Tpr-related protein family member, putative XP_953261.1 1227087 R 5874 CDS TA10850 3862826 complement(join(1229011..1229265,1229304..1229415,1229467..1230058,1230088..1230175,1230226..1230303,1230375..1230629)) 4 1 NC_011098.1 Tap579b07.q1c.cand.132 - score = 44.89; SMART pfam:isodh (PF00180) at aa 65-453, E()=3.00e-81; isocitrate dehydrogenase, putative 1230629 3862826 TA10850 Theileria annulata isocitrate dehydrogenase, putative XP_953262.1 1229011 R 5874 CDS TA10845 3862825 join(1231183..1231393,1231458..1232237,1232280..1232495,1232525..1232583,1232613..1233173,1233203..1233342,1233373..1233437,1233466..1233659,1233691..1233828,1233858..1233991,1234021..1234135) 4 1 NC_011098.1 SMART pfam:Metallophos (PF00149) at aa 264-524, E()=2.40e-15; pfam:Mre11_DNA_bind (PF04152) at aa 525-738, E()=2.00e-14; double-strand break repair protein, putative 1234135 3862825 TA10845 Theileria annulata double-strand break repair protein, putative XP_953263.1 1231183 D 5874 CDS TA10840 3862824 join(1234290..1234580,1234638..1235028,1235058..1235173,1235206..1235313,1235345..1235454,1235483..1235576,1235608..1235700,1235730..1236062) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.19 - score = 67.17; SMART pfam:tRNA-synt_2d (PF02409) at aa 248-504, E()=1.40e-98; phenylalanine-tRNA synthetase, putative 1236062 3862824 TA10840 Theileria annulata phenylalanine-tRNA synthetase, putative XP_953264.1 1234290 D 5874 CDS TA10835 3862823 complement(join(1236851..1237099,1237152..1237268)) 4 1 NC_011098.1 Tap579b07.q1c.cand.131 - score = 15.98; SMART pfam:TBCA (PF02970) at aa 6-94, E()=4.50e-04; tubulin binding cofactor, putative 1237268 3862823 TA10835 Theileria annulata tubulin binding cofactor, putative XP_953265.1 1236851 R 5874 CDS TA10830 3862822 complement(join(1237446..1237726,1237824..1238016)) 4 1 NC_011098.1 SMARTpfam:Acetyltransf (PF00583) at aa 51-133, E()=1.80e-14; acetyltransferase, putative 1238016 3862822 TA10830 Theileria annulata acetyltransferase, putative XP_953266.1 1237446 R 5874 CDS TA10825 3862821 complement(join(1238152..1238255,1238266..1238383,1238425..1238554,1238605..1238618)) 4 1 NC_011098.1 2 probable transmembrane helices predicted for TA10825 by TMHMM2.0 at aa 5-27 and 73-92; Signal peptide predicted for TA10825 by SignalP 2.0 HMM (Signal peptide probability 0.967, signal anchor probability 0.001) with cleavage site probability 0.514 between residues 18 and 19; uncharacterized protein 1238618 3862821 TA10825 Theileria annulata uncharacterized protein XP_953267.1 1238152 R 5874 CDS TA10820 3862820 complement(join(1239880..1240038,1240139..1240660)) 4 1 NC_011098.1 mRNA cleavage factor subunit, putative 1240660 3862820 TA10820 Theileria annulata mRNA cleavage factor subunit, putative XP_953268.1 1239880 R 5874 CDS TA10815 3862819 complement(join(1240779..1241066,1241096..1241208,1241250..1241769,1241799..1241887,1241920..1242036,1242071..1242220,1242253..1242740,1242899..1243220,1243251..1243645,1243679..1243790,1243829..1243912,1243952..1244486)) 4 1 NC_011098.1 Tap579b07.q1c.cand.126 - score = 93.50; SMART FN2 (SM00059) at aa 147-200, E()=6.51e-01; 1 probable transmembrane helix predicted for TA10815 by TMHMM2.0 at aa 7-26; uncharacterized protein 1244486 3862819 TA10815 Theileria annulata uncharacterized protein XP_953269.1 1240779 R 5874 CDS TA10810 3862818 complement(join(1244634..1244837,1244885..1245328)) 4 1 NC_011098.1 Tap579b07.q1c.cand.125 - score = 16.35; uncharacterized protein 1245328 3862818 TA10810 Theileria annulata uncharacterized protein XP_953270.1 1244634 R 5874 CDS TA10805 3862817 complement(1245694..1246722) 4 1 NC_011098.1 Tap579b07.q1c.cand.124 - score = 8.33; SMART pfam:mito_carrier (PF00153) at aa 175-259, E()=7.80e-02; uncharacterized protein 1246722 3862817 TA10805 Theileria annulata uncharacterized protein XP_953271.1 1245694 R 5874 CDS TA10800 3862816 1247375..1248559 4 1 NC_011098.1 Tap579b07.q1c.C.cand.20 - score = 15.89; SMART 2 transmembrane domains at aa 59-81 and 118-140; pfam:PAP2 (PF01569) at aa 166-278, E()=8.30e-02; 6 probable transmembrane helices predicted for TA10800 by TMHMM2.0 at aa 59-81, 118-140, 147-169, 184-206, 227-246 and 251-270; uncharacterized protein 1248559 3862816 TA10800 Theileria annulata uncharacterized protein XP_953272.1 1247375 D 5874 CDS TA10795 3862815 1249084..1250244 4 1 NC_011098.1 Tap579b07.q1c.C.cand.21 - score = 79.92; SMART 2 transmembrane domains at aa 59-81 and 114-133; pfam:PAP2 (PF01569) at aa 158-271, E()=7.10e-02; 6 probable transmembrane helices predicted for TA10795 by TMHMM2.0 at aa 59-81, 114-133, 146-168, 197-219, 224-243 and 253-275; uncharacterized protein 1250244 3862815 TA10795 Theileria annulata uncharacterized protein XP_953273.1 1249084 D 5874 CDS TA10790 3862814 join(1250393..1250417,1250449..1250938,1250969..1251155,1251186..1251550,1251580..1251810,1251858..1252102,1252140..1252376,1252454..1252570,1252612..1252748,1252831..1253319) 4 1 NC_011098.1 SMART pfam:AAA (SM00382) at aa 256-386, E()=2.17e-03; replication factor C, putative 1253319 3862814 TA10790 Theileria annulata replication factor C, putative XP_953274.1 1250393 D 5874 CDS TA10785 3862813 complement(join(1253419..1253773,1253803..1254009,1254044..1254210)) 4 1 NC_011098.1 Tap579b07.q1c.cand.123 - score = 15.57; SMART 5 transmembrane domains at aa 60-79, 99-121, 126-143, 148-170 and 177-199; 5 probable transmembrane helices predicted for TA10785 by TMHMM2.0 at aa 60-79, 99-121, 126-143, 148-170 and 177-199; uncharacterized protein 1254210 3862813 TA10785 Theileria annulata uncharacterized protein XP_953275.1 1253419 R 5874 CDS TA10780 3862812 1254657..1255220 4 1 NC_011098.1 Tap579b07.q1c.C.cand.22 - score = 12.70; SMART 1 transmembrane domain at aa 24-46; 1 probable transmembrane helix predicted for TA10780 by TMHMM2.0 at aa 24-46; uncharacterized protein 1255220 3862812 TA10780 Theileria annulata uncharacterized protein XP_953276.1 1254657 D 5874 CDS TA10775 3862811 join(1255333..1255543,1255611..1255882) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.23 - score = 10.51; SMART pfam:HesB-like (PF01521) at aa 53-159, E()=4.30e-22; HesB family member, putative 1255882 3862811 TA10775 Theileria annulata HesB family member, putative XP_953277.1 1255333 D 5874 CDS TA10770 3862810 complement(join(1255944..1256490,1256523..1256617,1256647..1257224,1257258..1257546)) 4 1 NC_011098.1 Tap579b07.q1c.cand.122 - score = 33.82; uncharacterized protein 1257546 3862810 TA10770 Theileria annulata uncharacterized protein XP_953278.1 1255944 R 5874 CDS TA10765 3862809 join(1257632..1257763,1257794..1257856) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.24 - score = 9.14; uncharacterized protein 1257856 3862809 TA10765 Theileria annulata uncharacterized protein XP_953279.1 1257632 D 5874 CDS TA10760 3862808 complement(1257981..1260254) 4 1 NC_011098.1 Tap579b07.q1c.cand.121 - score = 43.18; SMART pfam:Sec1 (PF00995) at aa 95-757, E()=1.70e-06; vacuolar protein sorting/secretion protein, putative 1260254 3862808 TA10760 Theileria annulata vacuolar protein sorting/secretion protein, putative XP_953280.1 1257981 R 5874 CDS TA10755 3862807 complement(join(1260610..1260787,1260835..1261523,1261557..1261771,1261863..1261926)) 4 1 NC_011098.1 Tap579b07.q1c.cand.120 - score = 24.78; Signal peptide predicted for TA10755 by SignalP 2.0 HMM (Signal peptide probability 0.813, signal anchor probability 0.000) with cleavage site probability 0.804 between residues 22 and 23; uncharacterized protein 1261926 3862807 TA10755 Theileria annulata uncharacterized protein XP_953281.1 1260610 R 5874 CDS TA10740 3862804 complement(join(1262018..1262155,1262195..1263067)) 4 1 NC_011098.1 Tap579b07.q1c.cand.119 - score = 26.26; Signal peptide predicted for TA10740 by SignalP 2.0 HMM (Signal peptide probability 0.976, signal anchor probability 0.002) with cleavage site probability 0.295 between residues 25 and 26; GPI-Anchor Signal predicted for TA10740 by DGPI v2.04 with cleavage site probability 0.156 near 297; uncharacterized protein 1263067 3862804 TA10740 Theileria annulata uncharacterized protein XP_953282.1 1262018 R 5874 CDS TA10735 3862653 complement(join(1263634..1264983,1265018..1265069,1265387..1265628)) 4 1 NC_011098.1 Tap579b07.q1c.cand.118 - score = 36.27; SMART ZnF_GATA (SM00401) at aa 410-458, E()=3.23e-05; 1 probable transmembrane helix predicted for TA10735 by TMHMM2.0 at aa 38-57; GATA-specific transcription factor, putative 1265628 3862653 TA10735 Theileria annulata GATA-specific transcription factor, putative XP_953283.1 1263634 R 5874 CDS TA10730 3862652 join(1266233..1266345,1266379..1266426,1266465..1266504,1266538..1266633,1266665..1266796,1266825..1266893,1266922..1266962,1267056..1267143) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.25 - score = 28.18; SMART RAB (SM00175) at aa 11-178, E()=1.04e-44; small_GTPase (SM00010) at aa 27-202, E()=1.25e-01; Rab GTPase, putative 1267143 3862652 TA10730 Theileria annulata Rab GTPase, putative XP_953284.1 1266233 D 5874 CDS TA10725 3862651 complement(join(1267284..1267472,1267536..1267595,1267709..1267833,1267863..1267946,1268005..1269943)) 4 1 NC_011098.1 Tap579b07.q1c.cand.117 - score = 60.73; SMART STYKc (SM00221) at aa 326-796, E()=5.34e-01; serine/threonine protein kinase, putative 1269943 3862651 TA10725 Theileria annulata serine/threonine protein kinase, putative XP_953285.1 1267284 R 5874 CDS TA10720 3862650 join(1270350..1271048,1271148..1271465,1271636..1271833,1271890..1273416) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.26 - score = 78.86; SMART HATPase_c (SM00387) at aa 152-314, E()=1.23e-02; pfam:HSP90 (PF00183) at aa 316-839, E()=4.90e-137; Apicoplast targetting peptide predicted by the PlasmoAP tool; 1 probable transmembrane helix predicted for TA10720 by TMHMM2.0 at aa 21-40; Signal anchor predicted for TA10720 by SignalP 2.0 HMM (Signal peptide probability 0.094, signal anchor probability 0.892) with cleavage site probability 0.042 between residues 39 and 40; heat shock protein (HSP90 homologue), putative 1273416 3862650 TA10720 Theileria annulata heat shock protein (HSP90 homologue), putative XP_953286.1 1270350 D 5874 CDS TA10715 3862649 join(1273675..1275061,1275092..1276074) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.27 - score = 55.70; uncharacterized protein 1276074 3862649 TA10715 Theileria annulata uncharacterized protein XP_953287.1 1273675 D 5874 CDS TA10710 3862648 join(1276257..1276658,1276705..1276939,1276996..1277303,1277377..1277460,1277491..1277674,1277729..1279410,1279466..1279691,1279760..1280280,1280309..1280908,1280958..1281004,1281044..1281368,1281467..1281799) 4 1 NC_011098.1 SMART RPOLA_N (SM00663) at aa 304-610, E()=1.84e-156; pfam:RNA_pol_Rpb1_4 (PF050000) at aa 814-922, E()=1.80e-42; pfam:RNA_pol_Rpb1_5 (PF04998) at aa 929-1600, E()=2.00e-64; DNA-directed RNA polymerase III largest subunit (RPC homologue), putative 1281799 3862648 TA10710 Theileria annulata DNA-directed RNA polymerase III largest subunit (RPC homologue), putative XP_953288.1 1276257 D 5874 CDS TA10705 3862647 complement(1281967..1283655) 4 1 NC_011098.1 Tap579b07.q1c.cand.116 - score = 28.62; Signal peptide predicted for TA10705 by SignalP 2.0 HMM (Signal peptide probability 0.982, signal anchor probability 0.000) with cleavage site probability 0.826 between residues 19 and 20; uncharacterized protein 1283655 3862647 TA10705 Theileria annulata uncharacterized protein XP_953289.1 1281967 R 5874 CDS TA10700 3862646 join(1283836..1284139,1284175..1284383,1284414..1284557,1284592..1284641,1284675..1284876) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.30 - score = 57.14; SMART pfam:Ribosomal_S15 (PF00312) at aa 173-259, E()=7.60e-11; 30S ribosomal protein S15, putative 1284876 3862646 TA10700 Theileria annulata 30S ribosomal protein S15, putative XP_953290.1 1283836 D 5874 CDS TA10695 3862645 join(1284967..1285668,1285712..1285951) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.30 - score = 57.14; uncharacterized protein 1285951 3862645 TA10695 Theileria annulata uncharacterized protein XP_953291.1 1284967 D 5874 CDS TA10685 3862643 join(1286019..1286335,1286420..1286768) 4 1 NC_011098.1 uncharacterized protein 1286768 3862643 TA10685 Theileria annulata uncharacterized protein XP_953292.1 1286019 D 5874 CDS TA10680 3862642 join(1287039..1287309,1287340..1287404) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.31 - score = 12.22; SMART 1 transmembrane domain at aa 59-81; 1 probable transmembrane helix predicted for TA10680 by TMHMM2.0 at aa 59-81; uncharacterized protein 1287404 3862642 TA10680 Theileria annulata uncharacterized protein XP_953293.1 1287039 D 5874 CDS TA10675 3862641 1287484..1287741 4 1 NC_011098.1 Tap579b07.q1c.C.cand.32 - score = 8.21; SMART ZnF_AN1 (SM00154) at aa 27-73, E()=7.53e-03; uncharacterized protein 1287741 3862641 TA10675 Theileria annulata uncharacterized protein XP_953294.1 1287484 D 5874 CDS TA10670 3862640 complement(join(1287746..1288766,1288856..1289729,1289760..1290057)) 4 1 NC_011098.1 Tap579b07.q1c.cand.115 - score = 44.55; SMART DEXDc (SM00487) at aa 72-474, E()=5.53e-06; HELICc (SM00490) at aa 551-626, E()=1.50e-07; DEAD-family helicase, putative 1290057 3862640 TA10670 Theileria annulata DEAD-family helicase, putative XP_953295.1 1287746 R 5874 CDS TA10665 3862639 join(1290310..1290413,1290442..1290471,1290501..1290573,1290717..1290989) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.33 - score = 21.48; uncharacterized protein 1290989 3862639 TA10665 Theileria annulata uncharacterized protein XP_953296.1 1290310 D 5874 CDS TA10660 3862638 1291373..1292794 4 1 NC_011098.1 Tap579b07.q1c.C.cand.34 - score = 11.76; SMART 10 transmembrane domains at aa 16-38, 61-83, 90-112, 122-141, 148-170, 180-202, 254-276, 286-308, 321-343 and 358-380; 10 probable transmembrane helices predicted for TA10660 by TMHMM2.0 at aa 16-38, 61-83, 90-112, 122-141, 148-170, 180-202, 254-276, 286-308, 321-343 and 358-380; uncharacterized protein 1292794 3862638 TA10660 Theileria annulata uncharacterized protein XP_953297.1 1291373 D 5874 CDS TA10655 3862637 1293200..1295863 4 1 NC_011098.1 10 probable transmembrane helices predicted for TA10655 by TMHMM2.0 at aa 13-35, 62-81, 102-119, 129-151, 187-209, 668-690, 703-722, 737-759, 766-788 and 810-828; uncharacterized protein 1295863 3862637 TA10655 Theileria annulata uncharacterized protein XP_953298.1 1293200 D 5874 CDS TA10650 3862636 1296217..1297725 4 1 NC_011098.1 Tap579b07.q1c.C.cand.36 - score = 22.35; SMART 10 transmembrane domains at aa 32-51, 66-88, 100-122, 127-149, 156-178, 193-212, 316-335, 350-372, 385-407 and 427-449; 10 probable transmembrane helices predicted for TA10650 by TMHMM2.0 at aa 32-51, 66-88, 100-122, 127-149, 156-178, 193-212, 316-335, 350-372, 385-407 and 427-449; uncharacterized protein 1297725 3862636 TA10650 Theileria annulata uncharacterized protein XP_953299.1 1296217 D 5874 CDS TA10645 3862635 1298178..1299725 4 1 NC_011098.1 Tap579b07.q1c.C.cand.37 - score = 18.55; SMART 11 transmembrane domains at aa 24-46, 80-102, 107-129, 138-160, 199-221, 300-322, 337-356, 368-390, 410-432, 445-467 and 482-504; 11 probable transmembrane helices predicted for TA10645 by TMHMM2.0 at aa 24-46, 80-102, 107-129, 138-160, 199-221, 300-322, 337-356, 368-390, 410-432, 445-467 and 482-504; Signal anchor predicted for TA10645 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.926) with cleavage site probability 0.000 between residues 47 and 48; uncharacterized protein 1299725 3862635 TA10645 Theileria annulata uncharacterized protein XP_953300.1 1298178 D 5874 CDS TA10640 3862722 1300114..1301547 4 1 NC_011098.1 Tap579b07.q1c.C.cand.38 - score = 17.60; SMART 8 transmembrane domains at aa 65-87, 92-114, 121-143, 184-206, 268-290, 300-318, 331-353 and 373-395; 8 probable transmembrane helices predicted for TA10640 by TMHMM2.0 at aa 65-87, 92-114, 121-143, 184-206, 268-290, 300-318, 331-353 and 373-395; uncharacterized protein 1301547 3862722 TA10640 Theileria annulata uncharacterized protein XP_953301.1 1300114 D 5874 CDS TA10635 3862721 complement(join(1301593..1301769,1301800..1301935,1301974..1302141,1302182..1302231,1302253..1302813,1302843..1302928,1302959..1303025,1303055..1303158,1303204..1303574,1303604..1303748,1303814..1304315)) 4 1 NC_011098.1 SMART 1 transmembrane domain at aa 12-31; 1 probable transmembrane helix predicted for TA10635 by TMHMM2.0 at aa 12-31; uncharacterized protein 1304315 3862721 TA10635 Theileria annulata uncharacterized protein XP_953302.1 1301593 R 5874 CDS TA10630 3862720 1304983..1306245 4 1 NC_011098.1 Tap579b07.q1c.C.cand.39 - score = 25.01; SMART S_TKc (SM00220) at aa 127-412, E()=1.03e-75; casein kinase II, alpha subunit, putative 1306245 3862720 TA10630 Theileria annulata casein kinase II, alpha subunit, putative XP_953303.1 1304983 D 5874 CDS TA10625 3862719 join(1306472..1306510,1306548..1306652,1306704..1306841,1306893..1307166,1307219..1307380,1307442..1307573,1307605..1307744) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.40 - score = 35.83; SMART pfam:CoA_binding (PF02629) at aa 32-150, E()=1.40e-58; pfam:ligase-CoA (PF00549) at aa 170-318, E()=3.20e-60; Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor 1307744 3862719 TA10625 Theileria annulata Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor XP_953304.1 1306472 D 5874 CDS TA10620 3862718 join(1307894..1308170,1308214..1308441,1308470..1308690,1308723..1309103,1309134..1309347,1309405..1309487,1309560..1309634,1309672..1309740) 4 1 NC_011098.1 SMART pfam:UPF0027 (PF01139) at aa 34-515, E()=1.00e-241; uncharacterized protein 1309740 3862718 TA10620 Theileria annulata uncharacterized protein XP_953305.1 1307894 D 5874 CDS TA10615 3862717 join(1310079..1310121,1310162..1310289,1310352..1310930) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.42 - score = 28.14; SMART 1 transmembrane domain at aa 5-27; 1 probable transmembrane helix predicted for TA10615 by TMHMM2.0 at aa 5-27; uncharacterized protein 1310930 3862717 TA10615 Theileria annulata uncharacterized protein XP_953306.1 1310079 D 5874 CDS TA10610 3862716 complement(join(1311022..1311282,1311313..1311417,1311469..1311717,1311782..1311942,1311976..1312116,1312185..1312448,1312513..1312816)) 4 1 NC_011098.1 Tap579b07.q1c.cand.111 - score = 40.31; SMART AAA (SM00382) at aa 101-403, E()=9.65e-10; RuvB-like DNA repair helicase, putative 1312816 3862716 TA10610 Theileria annulata RuvB-like DNA repair helicase, putative XP_953307.1 1311022 R 5874 CDS TA10605 3862715 join(1313319..1314270,1314301..1314470,1314521..1315169,1315228..1316270) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.43 - score = 49.36; SMART CysPc (SM00230) at aa 35-406, E()=3.49e-13; uncharacterized protein 1316270 3862715 TA10605 Theileria annulata uncharacterized protein XP_953308.1 1313319 D 5874 CDS TA10600 3862714 complement(join(1316515..1318897,1318975..1319179,1319248..1319643,1319715..1320024,1320108..1321406,1321456..1323679,1323708..1323799,1323826..1324563,1324653..1324983,1325018..1327566,1327620..1327905,1327937..1328065,1328097..1328262,1328293..1328421,1328451..1328837,1328881..1328998)) 4 1 NC_011098.1 Tap579b07.q1c.cand.110 - score = 251.52; SMART pfam:FAT (PF02259) at aa 2595-3205, E()=7.80e-05; PIKc (SM00146) at aa 3491-3865, E()=8.43e-02; uncharacterized protein 1328998 3862714 TA10600 Theileria annulata uncharacterized protein XP_953309.1 1316515 R 5874 CDS TA10595 3862713 1329408..1330973 4 1 NC_011098.1 Tap579b07.q1c.C.cand.44 - score = 32.50; SMART 7 WD40 (SM00320) domains at aa 198-237, E()=5.26e-08; 240-279, E()=1.49e-07; 282-321, E()=1.96e-07; 324-363, E()=6.04e-08; 368-404, E()=4.02e-04; 407-448, E()=4.38e-05; 460-498, E()=1.79e-01; uncharacterized protein 1330973 3862713 TA10595 Theileria annulata uncharacterized protein XP_953310.1 1329408 D 5874 CDS TA10590 3862712 complement(1331136..1331663) 4 1 NC_011098.1 Tap579b07.q1c.cand.109 - score = 9.36; SMART 4 transmembrane domains at 13-35, 40-62, 75-97 and 112-134; 4 probable transmembrane helices predicted for TA10590 by TMHMM2.0 at aa 13-35, 40-62, 75-97 and 112-134; uncharacterized protein 1331663 3862712 TA10590 Theileria annulata uncharacterized protein XP_953311.1 1331136 R 5874 CDS TA10580 3862710 complement(join(1332805..1333688,1333720..1334061,1334092..1334169,1334200..1334248,1334281..1334373)) 4 1 NC_011098.1 Tap579b07.q1c.cand.108 - score = 45.19; SMART 2 KH (SM00322) domains at aa 269-343, E()=8.52e-02; 362-433, E()=7.42e-01; uncharacterized protein 1334373 3862710 TA10580 Theileria annulata uncharacterized protein XP_953312.1 1332805 R 5874 CDS TA10575 3862709 complement(join(1335500..1335628,1335669..1335767,1335803..1335880)) 4 1 NC_011098.1 uncharacterized protein 1335880 3862709 TA10575 Theileria annulata uncharacterized protein XP_953313.1 1335500 R 5874 CDS TA10570 3862708 complement(join(1336134..1336314,1336360..1336547,1336597..1336665,1336696..1336791,1336822..1336966,1336998..1337181,1337234..1337335,1337374..1337473)) 4 1 NC_011098.1 Tap579b07.q1c.cand.106 - score = 37.48; SMART 1 transmembrane domain at aa 97-119; 2 probable transmembrane helices predicted for TA10570 by TMHMM2.0 at aa 7-29 and 97-119; uncharacterized protein 1337473 3862708 TA10570 Theileria annulata uncharacterized protein XP_953314.1 1336134 R 5874 CDS TA10565 3862707 complement(join(1337653..1337823,1337860..1337994)) 4 1 NC_011098.1 Tap579b07.q1c.cand.105 - score = 9.84; SMART RING (SM00184) at aa 30-90, E()=1.11e-01; ZnF_NFX (SM00438) at aa 33-46, E()=0.00e+00; uncharacterized protein 1337994 3862707 TA10565 Theileria annulata uncharacterized protein XP_953315.1 1337653 R 5874 CDS TA10560 3862706 join(1338227..1338607,1338637..1339479) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.45 - score = 27.45; SMART 4 WD40 (SM00320) domains at aa 52-95, E()=3.98e+00; 239-278, E()=2.48e-04; 282-327, E()=7.13e+00; 355-395, E()=5.11e+01; uncharacterized protein 1339479 3862706 TA10560 Theileria annulata uncharacterized protein XP_953316.1 1338227 D 5874 CDS TA10555 3862705 join(1339507..1339778,1339829..1339895,1339925..1340055,1340112..1340204,1340236..1340379,1340410..1340510,1340525..1340627,1340667..1340890,1340983..1341098) 4 1 NC_011098.1 SMART 5 transmembrane domains at aa 170-192, 205-239, 317-339, 346-368 and 388-410; 5 probable transmembrane helices predicted for TA10555 by TMHMM2.0 at aa 170-192, 205-239, 317-339, 346-368 and 388-410; uncharacterized protein 1341098 3862705 TA10555 Theileria annulata uncharacterized protein XP_953317.1 1339507 D 5874 CDS TA10550 3862704 join(1341185..1341840,1341873..1342068,1342099..1342243,1342275..1342332,1342363..1342466,1342497..1342689,1342732..1342801,1342998..1343133,1343178..1343345,1343376..1343482) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.47 - score = 53.95; SMART pfam:efhand (PF00036) at aa 477-505, E()=3.40e-06; uncharacterized protein 1343482 3862704 TA10550 Theileria annulata uncharacterized protein XP_953318.1 1341185 D 5874 CDS TA10545 3862703 1343910..1344221 4 1 NC_011098.1 Tap579b07.q1c.C.cand.48 - score = 31.86; SMART H4 (SM00417) at aa 16-90, E()=1.33e-26; histone H4, putative 1344221 3862703 TA10545 Theileria annulata histone H4, putative XP_953319.1 1343910 D 5874 CDS TA10540 3862692 join(1344356..1344532,1344574..1344852,1344882..1345034,1345063..1345125,1345156..1345231,1345263..1345331,1345362..1345660) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.48 - score = 31.86; SMART pfam:TIM (PF00121) at aa 118-365, E()=8.70e-21; 1 probable transmembrane helix predicted for TA10540 by TMHMM2.0 at aa 21-43; triosephosphate isomerase, putative 1345660 3862692 TA10540 Theileria annulata triosephosphate isomerase, putative XP_953320.1 1344356 D 5874 CDS TA10535 3862691 1345977..1346288 4 1 NC_011098.1 Tap579b07.q1c.C.cand.49 - score = 10.12; SMART H4 (SM00417) at aa 16-90, E()=1.33e-24; histone H4, putative 1346288 3862691 TA10535 Theileria annulata histone H4, putative XP_953321.1 1345977 D 5874 CDS TA10525 3862689 complement(1346491..1348026) 4 1 NC_011098.1 SMART STYKc (SM00221) at aa 58-345, E()=6.42e-04; 74-363, E()=3.84e-43; protein kinase, putative 1348026 3862689 TA10525 Theileria annulata protein kinase, putative XP_953322.1 1346491 R 5874 CDS TA10520 3862688 complement(join(1349049..1349203,1349233..1349277,1349310..1349457,1349486..1349758)) 4 1 NC_011098.1 Tap579b07.q1c.cand.103 - score = 29.42; SMART 3 EFh (SM00054) domains at aa 55-83, E()=7.52e-06; 91-119, E()=1.10e+01; 128-155, E()=1.55e+01; centrosome protein (centrin), putative 1349758 3862688 TA10520 Theileria annulata centrosome protein (centrin), putative XP_953323.1 1349049 R 5874 CDS TA10515 3862687 1350597..1351361 4 1 NC_011098.1 40s ribosomal protein s4, putative 1351361 3862687 TA10515 Theileria annulata 40s ribosomal protein s4, putative XP_953324.1 1350597 D 5874 CDS TA10510 3862686 complement(join(1351414..1351760,1351791..1351851,1351896..1352387)) 4 1 NC_011098.1 Tap579b07.q1c.cand.102 - score = 51.72; SMART 5 EFh (SM00054) domains at aa 45-73, E()=7.93e-01; 81-109, E()=6.16e-02; 121-149, E()=5.53e+00; 158-186, E()=3.25e-01 and 192-220, E()=2.04e+00; concerned of calling too much for a function; Signal peptide predicted for TA10510 by SignalP 2.0 HMM (Signal peptide probability 0.706, signal anchor probability 0.000) with cleavage site probability 0.449 between residues 21 and 22; uncharacterized protein 1352387 3862686 TA10510 Theileria annulata uncharacterized protein XP_953325.1 1351414 R 5874 CDS TA10505 3862685 complement(1353000..1355120) 4 1 NC_011098.1 SMART 9 transmembrane domains at aa 21-40, 73-90, 182-204, 219-238, 492-514, 524-546, 558-580, 585-607 and 628-650; 9 probable transmembrane helices predicted for TA10505 by TMHMM2.0 at aa 21-40, 73-90, 182-204, 219-238, 492-514, 524-546, 558-580, 585-607 and 628-650; uncharacterized protein 1355120 3862685 TA10505 Theileria annulata uncharacterized protein XP_953326.1 1353000 R 5874 CDS TA10500 3862684 complement(join(1355825..1356345,1356417..1356581,1356649..1357680,1357755..1357904,1357943..1358042)) 4 1 NC_011098.1 Tap579b07.q1c.cand.101 - score = 70.63; SMART pfam:HSP70 (PF00012) at aa 38-638, E()=0.00e+00; pfam:Hydantoinase_A (PF01968) at aa 157-411, E()=7.20e-02; pfam:UVR (PF02151) at aa 590-628, E()=1.00e-01; Signal peptide predicted for TA10500 by SignalP 2.0 HMM (Signal peptide probability 0.827, signal anchor probability 0.000) with cleavage site probability 0.784 between residues 26 and 27; heat-shock (HSP70 homologue) protein, putative 1358042 3862684 TA10500 Theileria annulata heat-shock (HSP70 homologue) protein, putative XP_953327.1 1355825 R 5874 CDS TA10495 3862683 complement(1358661..1358969) 4 1 NC_011098.1 Tap579b07.q1c.cand.100 - score = 11.57; uncharacterized protein 1358969 3862683 TA10495 Theileria annulata uncharacterized protein XP_953328.1 1358661 R 5874 CDS TA10490 3862682 join(1359613..1359705,1359736..1359830,1360162..1360259,1360289..1360344,1360394..1360719,1360933..1360989,1361021..1361192) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.51 - score = 20.16; uncharacterized protein 1361192 3862682 TA10490 Theileria annulata uncharacterized protein XP_953329.1 1359613 D 5874 CDS TA10485 3862681 complement(join(1361502..1361642,1361670..1361789,1362007..1362066,1362109..1362367,1362554..1362649,1362734..1362815,1362853..1362958)) 4 1 NC_011098.1 Tap579b07.q1c.cand.99 - score = 24.21; uncharacterized protein 1362958 3862681 TA10485 Theileria annulata uncharacterized protein XP_953330.1 1361502 R 5874 CDS TA10480 3862680 complement(join(1363885..1364315,1364448..1364871)) 4 1 NC_011098.1 Tap579b07.q1c.cand.98 - score = 50.55; SMART DnaJ (SM00271) at aa 22-77, E()=5.14e-25; Signal peptide predicted for TA10480 by SignalP 2.0 HMM (Signal peptide probability 0.847, signal anchor probability 0.023) with cleavage site probability 0.449 between residues 20 and 21; molecular chaperone (DnaJ family), putative 1364871 3862680 TA10480 Theileria annulata molecular chaperone (DnaJ family), putative XP_953331.1 1363885 R 5874 CDS TA10470 3862678 complement(1365138..1366127) 4 1 NC_011098.1 Tap579b07.q1c.cand.98 - score = 50.55; SMART 2 transmembrane domains at aa 59-81 and 85-104; pfam:Acetyltransf (PF00583) at aa 198-276, E()=3.90e-10; 2 probable transmembrane helices predicted for TA10470 by TMHMM2.0 at aa 59-81 and 85-104; uncharacterized protein 1366127 3862678 TA10470 Theileria annulata uncharacterized protein XP_953332.1 1365138 R 5874 CDS TA10465 3862677 join(1366906..1366976,1367006..1367146,1367175..1367784) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.52 - score = 26.60; SMART pfam:PGAM (PF00300) at aa 2-222, E()=1.50e-81; phosphoglycerate mutase, putative 1367784 3862677 TA10465 Theileria annulata phosphoglycerate mutase, putative XP_953333.1 1366906 D 5874 CDS TA10460 3862676 complement(join(1368487..1369554,1369728..1373798)) 4 1 NC_011098.1 Tap579b07.q1c.cand.97 - score = 111.32; uncharacterized protein 1373798 3862676 TA10460 Theileria annulata uncharacterized protein XP_953334.1 1368487 R 5874 CDS TA10455 3862675 join(1374518..1374784,1374815..1375213) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.53 - score = 16.65; uncharacterized protein 1375213 3862675 TA10455 Theileria annulata uncharacterized protein XP_953335.1 1374518 D 5874 CDS TA10450 3862674 complement(join(1375220..1375642,1375672..1376810,1376842..1376911,1376943..1377000,1377035..1377077,1377112..1377182,1377228..1377280)) 4 1 NC_011098.1 Tap579b07.q1c.cand.96 - score = 70.12; SMART 1 transmembrane domain at aa 12-31; SEL1 (SM00671) at aa 86-125, E()=8.19e-02; 126-163, E()=1.75e-01; 289-324, E()=1.25e-06; 325-367, E()=6.76e+00; 410-445, E()=3.67e+01; 1 probable transmembrane helix predicted for TA10450 by TMHMM2.0 at aa 12-31; Signal anchor predicted for TA10450 by SignalP 2.0 HMM (Signal peptide probability 0.005, signal anchor probability 0.886) with cleavage site probability 0.002 between residues 27 and 28; uncharacterized protein 1377280 3862674 TA10450 Theileria annulata uncharacterized protein XP_953336.1 1375220 R 5874 CDS TA10445 3862566 complement(join(1377313..1377447,1377480..1377652,1377682..1377908,1377940..1378502)) 4 1 NC_011098.1 Tap579b07.q1c.cand.96 - score = 70.12; uncharacterized protein 1378502 3862566 TA10445 Theileria annulata uncharacterized protein XP_953337.1 1377313 R 5874 CDS TA10440 3862565 join(1378894..1379969,1380049..1380137,1380170..1380318,1380389..1380523,1380587..1380704,1380749..1380867) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.54 - score = 61.98; SMART pfam:SART-1 (PF003343) at aa 1-522, E()=4.70e-04; uncharacterized protein 1380867 3862565 TA10440 Theileria annulata uncharacterized protein XP_953338.1 1378894 D 5874 CDS TA10435 3862564 complement(join(1380933..1381064,1381098..1381397,1381463..1381675,1381705..1381757,1381790..1381984,1382016..1382381,1382411..1382791,1382829..1383027)) 4 1 NC_011098.1 SMART pfam:BSD (PF03909) at aa 212-260, E()=3.10e-03; uncharacterized protein 1383027 3862564 TA10435 Theileria annulata uncharacterized protein XP_953339.1 1380933 R 5874 CDS TA10430 3862563 complement(join(1383275..1383495,1383544..1383817,1383849..1383919,1383950..1384205,1384238..1384270)) 4 1 NC_011098.1 uncharacterized protein 1384270 3862563 TA10430 Theileria annulata uncharacterized protein XP_953340.1 1383275 R 5874 CDS TA10425 3862562 join(1384590..1384629,1384666..1385954) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.55 - score = 47.87; SMART pfam:enolase_N (PF03952) at aa 3-139, E()=9.70e-67; pfam:enolase (PF00113) at aa 149-441, E()=1.80e-199; enolase, putative 1385954 3862562 TA10425 Theileria annulata enolase, putative XP_953341.1 1384590 D 5874 CDS TA10415 3862560 1386119..1386919 4 1 NC_011098.1 Tap579b07.q1c.C.cand.56 - score = 22.74; uncharacterized protein 1386919 3862560 TA10415 Theileria annulata uncharacterized protein XP_953342.1 1386119 D 5874 CDS TA10410 3862559 join(1387173..1387319,1387352..1387652,1387684..1392248,1392278..1392505) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.57 - score = 115.92; SMART pfam:Yeast_VAR1 (PF05316) at aa 844-1154, E()=5.60e-02; uncharacterized protein 1392505 3862559 TA10410 Theileria annulata uncharacterized protein XP_953343.1 1387173 D 5874 CDS TA10405 3862558 join(1392544..1392879,1392920..1393190,1393223..1393365) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.58 - score = 28.68; SMART pfam:Maf (PF02545) at aa 19-243, E()=1.20e-20; Maf-like protein, putative 1393365 3862558 TA10405 Theileria annulata Maf-like protein, putative XP_953344.1 1392544 D 5874 CDS TA10400 3862557 join(1393552..1393825,1393859..1394120,1394156..1394316,1394346..1394583,1394615..1395148,1395180..1395332,1395362..1395454,1395485..1395765,1395796..1396164,1396193..1396374,1396407..1396600,1396629..1396824,1396854..1397252,1397282..1397478,1397512..1397632) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.59 - score = 159.19; uncharacterized protein 1397632 3862557 TA10400 Theileria annulata uncharacterized protein XP_953345.1 1393552 D 5874 CDS TA10395 3862556 1397976..1401257 4 1 NC_011098.1 SMART 12 transmembrane domains at aa 50-72, 335-357, 372-394, 448-470, 490-512, 524-543, 558-580, 668-687, 910-932, 966-988, 1014-1036 and 1057-1079; 12 probable transmembrane helices predicted for TA10395 by TMHMM2.0 at aa 50-72, 335-357, 372-394, 448-470, 490-512, 524-543, 558-580, 668-687, 910-932, 966-988, 1014-1036 and 1057-1079; uncharacterized protein 1401257 3862556 TA10395 Theileria annulata uncharacterized protein XP_953346.1 1397976 D 5874 CDS TA10390 3862555 join(1402050..1402706,1402735..1402808,1402839..1403014,1403046..1403116,1403147..1403283,1403315..1403406,1403436..1403554,1403584..1403716,1403749..1403804,1403835..1403963) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.60 - score = 48.72; SMART DEXDc (SM00487) at aa 117-376, E()=2.42e-11; pfam:helicase_C (PF00271) at aa 434-528, E()=7.90e-03; DEAD-box family helicase, putative 1403963 3862555 TA10390 Theileria annulata DEAD-box family helicase, putative XP_953347.1 1402050 D 5874 CDS TA10385 3862554 1404554..1404904 4 1 NC_011098.1 Tap579b07.q1c.C.cand.61 - score = 15.89; SMART pfam:60s_ribosomal (PF00428) at aa 32-115, E()=1.40e-20; 60S ribosomal protein P1, putative 1404904 3862554 TA10385 Theileria annulata 60S ribosomal protein P1, putative XP_953348.1 1404554 D 5874 CDS TA10380 3862553 join(1405086..1405224,1405262..1405590) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.62 - score = 16.76; SMART pfam:cytochrome_c (PF00034) at aa 19-139, E()=3.70e-05; cyctochrome C, putative 1405590 3862553 TA10380 Theileria annulata cyctochrome C, putative XP_953349.1 1405086 D 5874 CDS TA10375 3862552 complement(join(1405706..1406025,1406056..1406902)) 4 1 NC_011098.1 Tap579b07.q1c.cand.93 - score = 30.24; uncharacterized protein 1406902 3862552 TA10375 Theileria annulata uncharacterized protein XP_953350.1 1405706 R 5874 CDS TA10370 3862551 join(1407802..1408051,1408137..1408422,1408456..1408633,1408665..1408775,1408806..1409190,1409273..1409773,1409804..1409988) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.63 - score = 52.28; SMART pfam:ATP-synt_ab_N (PF02874) at aa 41-96, E()=2.80e-12; pfam:ATP-synt_ab (PF00006) at aa 283-475, E()=2.00e-79; pfam:ATP-synt_ab-C (PF00306) at aa 483-630, E()=1.50e-36; 1 probable transmembrane helix predicted for TA10370 by TMHMM2.0 at aa 21-43; vacuolar H+-ATPase, a subunit, putative 1409988 3862551 TA10370 Theileria annulata vacuolar H+-ATPase, a subunit, putative XP_953351.1 1407802 D 5874 CDS TA10360 3862549 complement(join(1409999..1410412,1410442..1410585,1410616..1410696)) 4 1 NC_011098.1 Tap579b07.q1c.cand.92 - score = 24.53; uncharacterized protein 1410696 3862549 TA10360 Theileria annulata uncharacterized protein XP_953352.1 1409999 R 5874 CDS TA10355 3862548 join(1411125..1411403,1411434..1413738,1413777..1413931,1413962..1414027) 4 1 NC_011098.1 tRNA-splicing endonuclease, SEN1 homologue, putative 1414027 3862548 TA10355 Theileria annulata tRNA-splicing endonuclease, SEN1 homologue, putative XP_953353.1 1411125 D 5874 CDS TA10350 3862547 complement(join(1414076..1414524,1414563..1414809)) 4 1 NC_011098.1 Tap579b07.q1c.cand.91 - score = 21.96; uncharacterized protein 1414809 3862547 TA10350 Theileria annulata uncharacterized protein XP_953354.1 1414076 R 5874 CDS TA10345 3862634 1415033..1416223 4 1 NC_011098.1 Tap579b07.q1c.C.cand.65 - score = 24.90; SMART 1 transmembrane domain at aa 365-387; 1 probable transmembrane helix predicted for TA10345 by TMHMM2.0 at aa 365-387; GPI-Anchor Signal predicted for TA10345 by DGPI v2.04, no cleavage site predicted; uncharacterized protein 1416223 3862634 TA10345 Theileria annulata uncharacterized protein XP_953355.1 1415033 D 5874 CDS TA10340 3862633 complement(join(1416393..1416476,1416506..1416687,1416718..1416809,1416839..1416943,1416973..1417323,1417357..1417419,1417449..1417548,1417578..1417965)) 4 1 NC_011098.1 Tap579b07.q1c.cand.90 - score = 53.65; SMART pfam:E1_dehydrog (PF00676) at aa 110-411, E()=5.10e-94; branched-chain alpha-keto acid dehydrogenase E1, subunit, putative 1417965 3862633 TA10340 Theileria annulata branched-chain alpha-keto acid dehydrogenase E1, subunit, putative XP_953356.1 1416393 R 5874 CDS TA10335 3862632 1418378..1419310 4 1 NC_011098.1 Tap579b07.q1c.C.cand.66 - score = 21.19; uncharacterized protein 1419310 3862632 TA10335 Theileria annulata uncharacterized protein XP_953357.1 1418378 D 5874 CDS TA10330 3862631 complement(join(1419350..1419497,1419529..1419664,1419694..1419968,1420001..1420170)) 4 1 NC_011098.1 Tap579b07.q1c.cand.89 - score = 17.84; uncharacterized protein 1420170 3862631 TA10330 Theileria annulata uncharacterized protein XP_953358.1 1419350 R 5874 CDS TA10325 3862630 join(1420609..1421487,1421518..1421583,1421615..1421781,1421814..1421886) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.67 - score = 35.31; uncharacterized protein 1421886 3862630 TA10325 Theileria annulata uncharacterized protein XP_953359.1 1420609 D 5874 CDS TA10320 3862629 join(1422181..1422318,1422432..1422512,1422542..1422595) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.68 - score = 12.11; SMART RRM (SM00360) at aa 11-84, E()=2.73e-07; uncharacterized protein 1422595 3862629 TA10320 Theileria annulata uncharacterized protein XP_953360.1 1422181 D 5874 CDS TA10315 3862628 complement(1422781..1424172) 4 1 NC_011098.1 Tap579b07.q1c.cand.88 - score = 23.19; SMART pfam:SDF (PF00375) at aa 32-452, E()=5.40e-06; 10 probable transmembrane helices predicted for TA10315 by TMHMM2.0 at aa 23-45, 71-93, 106-128, 194-213, 233-255, 270-292, 305-324, 344-366, 378-400 and 404-426; Signal anchor predicted for TA10315 by SignalP 2.0 HMM (Signal peptide probability 0.002, signal anchor probability 0.944) with cleavage site probability 0.001 between residues 47 and 48; sodium transporter, putative 1424172 3862628 TA10315 Theileria annulata sodium transporter, putative XP_953361.1 1422781 R 5874 CDS TA10300 3862625 complement(join(1424497..1425365,1425395..1425737)) 4 1 NC_011098.1 Tap579b07.q1c.cand.87 - score = 23.49; SMART 6 transmembrane domains at aa 24-46, 67-89, 117-135, 213-235, 250-272 and 297-319; 6 probable transmembrane helices predicted for TA10300 by TMHMM2.0 at aa 24-46, 67-89, 117-135, 213-235, 250-272 and 297-319; uncharacterized protein 1425737 3862625 TA10300 Theileria annulata uncharacterized protein XP_953362.1 1424497 R 5874 CDS TA10295 3862624 join(1425925..1426048,1426084..1428344) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.69 - score = 49.71; SMART DEXDc (SM00487) at aa 22-262, E()=2.91e-23; HELICc (SM00490) at aa 400-480, E()=1.73e-16; DEAD-box-family helicase, putative 1428344 3862624 TA10295 Theileria annulata DEAD-box-family helicase, putative XP_953363.1 1425925 D 5874 CDS TA10290 3862623 complement(join(1428513..1428602,1428633..1428748,1428780..1428930,1428961..1429079,1429109..1429241,1429302..1429382)) 4 1 NC_011098.1 Tap579b07.q1c.cand.86 - score = 24.44; SMART pfam:YEATS (PF03366) at aa 12-117, E()=1.20e-27; uncharacterized protein 1429382 3862623 TA10290 Theileria annulata uncharacterized protein XP_953364.1 1428513 R 5874 CDS TA10285 3862622 join(1429628..1430194,1430233..1430478,1430511..1430546,1430579..1430648,1430676..1430893) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.70 - score = 41.31; Signal peptide predicted for TA10285 by SignalP 2.0 HMM (Signal peptide probability 0.998, signal anchor probability 0.000) with cleavage site probability 0.859 between residues 17 and 18; uncharacterized protein 1430893 3862622 TA10285 Theileria annulata uncharacterized protein XP_953365.1 1429628 D 5874 CDS TA10280 3862621 1431340..1434150 4 1 NC_011098.1 Tap579b07.q1c.C.cand.71 - score = 65.21; SMART pfam:V_ATPase_sub_a (PF01496) at aa 25-924, E()=2.30e-103; 6 probable transmembrane helices predicted for TA10280 by TMHMM2.0 at aa 471-493, 513-535, 599-621, 628-650, 696-718 and 864-886; vacuolar H+ ATPase, 116 kDa subunit, putative 1434150 3862621 TA10280 Theileria annulata vacuolar H+ ATPase, 116 kDa subunit, putative XP_953366.1 1431340 D 5874 CDS TA10275 3862620 complement(join(1434246..1434502,1434587..1435413,1435445..1435794)) 4 1 NC_011098.1 Tap579b07.q1c.cand.85 - score = 37.03; SMART pfam:MMR_HSR1 (PF01926) at aa 81-401, E()=3.40e-05; pfam:GTP_EFTU (PF00009) at aa 196-388, E()=5.00e-02; Signal peptide predicted for TA10275 by SignalP 2.0 HMM (Signal peptide probability 0.841, signal anchor probability 0.000) with cleavage site probability 0.813 between residues 16 and 17; GTP-binding protein/GTPase, putative 1435794 3862620 TA10275 Theileria annulata GTP-binding protein/GTPase, putative XP_953367.1 1434246 R 5874 CDS TA10270 3862619 complement(join(1435800..1436580,1436632..1436894)) 4 1 NC_011098.1 Tap579b07.q1c.cand.84 - score = 18.59; SMART pfam:Ribosomal_L3 (PF00297) at aa 95-291, E()=1.30e-31; 50S ribosomal protein L3, putative 1436894 3862619 TA10270 Theileria annulata 50S ribosomal protein L3, putative XP_953368.1 1435800 R 5874 CDS TA10265 3862618 complement(join(1437038..1437124,1437159..1437410,1437443..1437571,1437604..1437714,1437759..1437909,1437940..1438232,1438263..1438359,1438397..1438455)) 4 1 NC_011098.1 Tap579b07.q1c.cand.83 - score = 33.18; uncharacterized protein 1438455 3862618 TA10265 Theileria annulata uncharacterized protein XP_953369.1 1437038 R 5874 CDS TA10260 3862617 1438741..1441842 4 1 NC_011098.1 Tap579b07.q1c.C.cand.72 - score = 63.22; SMART pfam:Nucleoporin2 (PF04096) at aa 864-1026, E()=7.70e-10; nucleoporin, putative 1441842 3862617 TA10260 Theileria annulata nucleoporin, putative XP_953370.1 1438741 D 5874 CDS TA10255 3862616 join(1442072..1442185,1442269..1442403) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.73 - score = 9.75; SMART pfam:Ribosomal_S21e (PF01249) at aa 1-81, E()=4.40e-30; 40S ribosomal protein S21, putative 1442403 3862616 TA10255 Theileria annulata 40S ribosomal protein S21, putative XP_953371.1 1442072 D 5874 CDS TA10250 3862546 complement(join(1442480..1442614,1442659..1442760,1442827..1442952)) 4 1 NC_011098.1 Tap579b07.q1c.cand.82 - score = 8.00; SMART pfam:Img2 (PF05046) at aa 31-94, E()=1.80e-05; mitochondrial large subunit ribosomal protein, putative 1442952 3862546 TA10250 Theileria annulata mitochondrial large subunit ribosomal protein, putative XP_953372.1 1442480 R 5874 CDS TA10245 3862545 complement(join(1443028..1443165,1443197..1443607,1443728..1443881,1443911..1443981,1444039..1444119,1444149..1444238,1444268..1444472,1444502..1444573,1444604..1444704,1444734..1445127,1445158..1445450)) 4 1 NC_011098.1 Tap579b07.q1c.cand.81 - score = 68.97; SMART pfam:Peptidase_M24 (PF00557) at aa 356-595, E()=3.40e-07; peptidase, putative 1445450 3862545 TA10245 Theileria annulata peptidase, putative XP_953373.1 1443028 R 5874 CDS TA10240 3862544 1445904..1448723 4 1 NC_011098.1 Tap579b07.q1c.C.cand.74 - score = 86.03; SMART PINT (SM00088) at aa 784-872, E()=5.08e-06; eukaryotic translation initiation factor 3 (subunit 8), putative 1448723 3862544 TA10240 Theileria annulata eukaryotic translation initiation factor 3 (subunit 8), putative XP_953374.1 1445904 D 5874 CDS TA10235 3862543 complement(join(1448831..1449190,1449281..1449790,1449947..1451457,1451614..1451831,1451866..1452092)) 4 1 NC_011098.1 SMART pfam:tRNA-synt_1 (PF00133) at aa 41-666, E()=8.60e-221; valyl-tRNA synthetase, putative 1452092 3862543 TA10235 Theileria annulata valyl-tRNA synthetase, putative XP_953375.1 1448831 R 5874 CDS TA10230 3862542 join(1452861..1453814,1453852..1454372,1454409..1454631,1454702..1455897,1455992..1456304) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.75 - score = 71.56; SMART 1 transmembrane domain at aa 12-31; 1 probable transmembrane helix predicted for TA10230 by TMHMM2.0 at aa 12-31; Signal peptide predicted for TA10230 by SignalP 2.0 HMM (Signal peptide probability 0.828, signal anchor probability 0.155) with cleavage site probability 0.739 between residues 30 and 31; uncharacterized protein 1456304 3862542 TA10230 Theileria annulata uncharacterized protein XP_953376.1 1452861 D 5874 CDS TA10225 3862541 complement(join(1456922..1457284,1457484..1457658,1457702..1457835,1457867..1457919,1457949..1458084,1458115..1458163,1458202..1458243,1458275..1458325,1458391..1458590)) 4 1 NC_011098.1 Tap579b07.q1c.cand.79 - score = 28.42; uncharacterized protein 1458590 3862541 TA10225 Theileria annulata uncharacterized protein XP_953377.1 1456922 R 5874 CDS TA10220 3862540 join(1458797..1459075,1459107..1459304,1459334..1459486,1459517..1459625,1459655..1459726,1459792..1459968,1459999..1460045,1460088..1460117,1460148..1460302,1460335..1460437) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.77 - score = 43.96; uncharacterized protein 1460437 3862540 TA10220 Theileria annulata uncharacterized protein XP_953378.1 1458797 D 5874 CDS TA10215 3862539 join(1460464..1460530,1460561..1461201) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.78 - score = 34.30; SMART pfam:RimM (PF01782) at aa 93-181, E()=2.80e-20; 16S rRNA processing protein (RimM homologue), putative 1461201 3862539 TA10215 Theileria annulata 16S rRNA processing protein (RimM homologue), putative XP_953379.1 1460464 D 5874 CDS TA10210 3862538 1461282..1461785 4 1 NC_011098.1 Tap579b07.q1c.C.cand.78 - score = 34.30; SMART ZnF_C2H2 (SM00355) at aa 68-90, E()=2.67e-01; uncharacterized protein 1461785 3862538 TA10210 Theileria annulata uncharacterized protein XP_953380.1 1461282 D 5874 CDS TA10205 3862537 complement(join(1461814..1462017,1462070..1462229,1462259..1462514,1462590..1462832,1462901..1463264)) 4 1 NC_011098.1 Tap579b07.q1c.cand.78 - score = 28.57; uncharacterized protein 1463264 3862537 TA10205 Theileria annulata uncharacterized protein XP_953381.1 1461814 R 5874 CDS TA10190 3862534 complement(1463422..1465410) 4 1 NC_011098.1 Tap579b07.q1c.cand.77 - score = 46.44; uncharacterized protein 1465410 3862534 TA10190 Theileria annulata uncharacterized protein XP_953382.1 1463422 R 5874 CDS TA10185 3862533 complement(join(1465892..1466650,1466799..1466864)) 4 1 NC_011098.1 Tap579b07.q1c.cand.76 - score = 26.07; SMART pfam:Ribosomal_S2 (PF00318) at aa 18-186, E()=1.10e-75; ribosomal protein S2, putative 1466864 3862533 TA10185 Theileria annulata ribosomal protein S2, putative XP_953383.1 1465892 R 5874 CDS TA10180 3862532 complement(join(1467328..1467383,1467437..1467662)) 4 1 NC_011098.1 Tap579b07.q1c.cand.75 - score = 11.82; uncharacterized protein 1467662 3862532 TA10180 Theileria annulata uncharacterized protein XP_953384.1 1467328 R 5874 CDS TA10175 3862531 join(1467938..1468001,1468142..1468653) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.79 - score = 13.80; SMART 1 transmembrane domain at aa 138-160; 1 probable transmembrane helix predicted for TA10175 by TMHMM2.0 at aa 138-160; uncharacterized protein 1468653 3862531 TA10175 Theileria annulata uncharacterized protein XP_953385.1 1467938 D 5874 CDS TA10170 3862530 join(1468866..1468925,1468969..1469139,1469194..1469308,1469365..1469436,1469468..1469991,1470033..1470163,1470199..1470339,1470389..1470596,1470653..1470776,1470811..1470920,1471006..1471060,1471089..1471192,1471250..1471381,1471437..1471691,1471767..1471805) 4 1 NC_011098.1 SMART RRM (SM00360) at aa 168-243, E()=6.45e-18; SWAP (SM00064) at aa 291-366, E()=3.61e-01; RPR (SM00582) at aa 424-559, E()=4.43e-05; uncharacterized protein 1471805 3862530 TA10170 Theileria annulata uncharacterized protein XP_953386.1 1468866 D 5874 CDS TA10165 3862529 1471871..1474624 4 1 NC_011098.1 Tap579b07.q1c.C.cand.82 - score = 47.37; SMART 10 transmembrane domains at aa 12-34, 49-71, 92-114, 119-141, 148-170, 185-207, 278-300, 755-777, 797-819 and 824-846; 10 probable transmembrane helices predicted for TA10165 by TMHMM2.0 at aa 12-34, 49-71, 92-114, 119-141, 148-170, 185-207, 278-300, 755-777, 797-819 and 824-846; Tpr-related protein family member, putative 1474624 3862529 TA10165 Theileria annulata Tpr-related protein family member, putative XP_953387.1 1471871 D 5874 CDS TA10160 3862528 complement(1474697..1475185) 4 1 NC_011098.1 Tap579b07.q1c.cand.73 - score = 14.34; SMART pfam:Ribosomal_S27 (PF01599) at aa 110-155, E()=1.40e-25; S27 ribosomal protein, putative 1475185 3862528 TA10160 Theileria annulata S27 ribosomal protein, putative XP_953388.1 1474697 R 5874 CDS TA10155 3862527 join(1475733..1475807,1475884..1476208,1476245..1476403,1476465..1477054,1477237..1477445,1477481..1478269,1478304..1478393,1478426..1478870) 4 1 NC_011098.1 SMART pfam:WW (PF00397) at aa 184-215, E()=1.40e-02; uncharacterized protein 1478870 3862527 TA10155 Theileria annulata uncharacterized protein XP_953389.1 1475733 D 5874 CDS TA10150 3863349 complement(join(1479097..1479177,1479210..1479308,1479340..1479425,1479461..1479607,1479675..1479824,1479884..1480022)) 4 1 NC_011098.1 SMART pfam:NUDIX (PF00293) at aa 85-224, E()=8.50e-05; nucleoside diphosphate hydrolase, putative 1480022 3863349 TA10150 Theileria annulata nucleoside diphosphate hydrolase, putative XP_953390.1 1479097 R 5874 CDS TA10145 3863348 join(1480388..1480427,1480507..1480626,1480691..1484481) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.84 - score = 88.73; SMART pfam:SAC3_GANP (PF03399) at aa 101-392, E()=1.60e-08; uncharacterized protein 1484481 3863348 TA10145 Theileria annulata uncharacterized protein XP_953391.1 1480388 D 5874 CDS TA10140 3863347 join(1484594..1484659,1484743..1484861,1484975..1485155,1485220..1485405,1485473..1485919) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.84 - score = 88.73; uncharacterized protein 1485919 3863347 TA10140 Theileria annulata uncharacterized protein XP_953392.1 1484594 D 5874 CDS TA10135 3863346 join(1485976..1486075,1486165..1486301,1486688..1486888,1486930..1487267,1487327..1487425,1487460..1487526,1487557..1487697,1487726..1487827,1487857..1487940,1487975..1488115) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.85 - score = 30.22; uncharacterized protein 1488115 3863346 TA10135 Theileria annulata uncharacterized protein XP_953393.1 1485976 D 5874 CDS TA10130 3863345 complement(join(1488203..1488502,1488534..1488575,1488633..1488749,1488783..1488838,1488873..1488968,1489000..1489077,1489137..1489293,1489378..1489500,1489530..1489649,1489752..1489951,1489991..1490108)) 4 1 NC_011098.1 Tap579b07.q1c.cand.71 - score = 17.58; SMART pfam:Glycos_transf_1 (PF00534) at aa 189-357, E()=4.40e-34; glycosyl transferase, putative 1490108 3863345 TA10130 Theileria annulata glycosyl transferase, putative XP_953394.1 1488203 R 5874 CDS TA10125 3863344 complement(join(1490416..1491062,1491133..1491247,1491277..1491395,1491454..1491672,1491730..1491906,1491968..1492157,1492192..1492474,1492550..1492644,1492786..1492833)) 4 1 NC_011098.1 Tap579b07.q1c.cand.70 - score = 32.63; uncharacterized protein 1492833 3863344 TA10125 Theileria annulata uncharacterized protein XP_953395.1 1490416 R 5874 CDS TA10120 3863343 complement(1492987..1494765) 4 1 NC_011098.1 Tap579b07.q1c.cand.69 - score = 62.92; SMART PINT (SM00088) at aa 491-574. E()=1.88e-18; proteasome subunit, putative 1494765 3863343 TA10120 Theileria annulata proteasome subunit, putative XP_953396.1 1492987 R 5874 CDS TA10115 3863342 complement(join(1495111..1495216,1495344..1495444,1495484..1495825,1495856..1495921)) 4 1 NC_011098.1 Tap579b07.q1c.cand.69 - score = 62.92; uncharacterized protein 1495921 3863342 TA10115 Theileria annulata uncharacterized protein XP_953397.1 1495111 R 5874 CDS TA10110 3863341 join(1496333..1496696,1496780..1497007,1497122..1497249) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.86 - score = 10.61; SMART pfam:DER1 (PF04511) at aa 14-212, E()=2.80e-34; 5 probable transmembrane helices predicted for TA10110 by TMHMM2.0 at aa 20-37, 57-79, 91-113, 117-139 and 159-181; Signal anchor predicted for TA10110 by SignalP 2.0 HMM (Signal peptide probability 0.016, signal anchor probability 0.950) with cleavage site probability 0.009 between residues 39 and 40; uncharacterized protein 1497249 3863341 TA10110 Theileria annulata uncharacterized protein XP_953398.1 1496333 D 5874 CDS TA10105 3863340 complement(join(1497443..1497621,1497656..1497728,1497758..1497811,1497840..1497914,1497947..1498010,1498099..1498208,1498250..1498317,1498391..1498466)) 4 1 NC_011098.1 Tap579b07.q1c.cand.68 - score = 19.64; SMART pfam:DUF155 (PF02582) at aa 1-210, E()=3.90e-02; uncharacterized protein 1498466 3863340 TA10105 Theileria annulata uncharacterized protein XP_953399.1 1497443 R 5874 CDS TA10100 3863339 complement(join(1499235..1500040,1500110..1500260,1500307..1500470,1500500..1500577,1500610..1500952)) 4 1 NC_011098.1 Tap579b07.q1c.cand.67 - score = 104.10; SMART 2 RRM (SM00360) at aa 128-199, E()=3.16e-12; 212-283, E()=2.13e-18; RNA-binding protein, putative 1500952 3863339 TA10100 Theileria annulata RNA-binding protein, putative XP_953400.1 1499235 R 5874 CDS TA10095 3863338 complement(join(1501258..1502253,1502284..1502309,1502342..1502396,1502427..1502624,1502702..1502930,1502988..1503100)) 4 1 NC_011098.1 Tap579b07.q1c.cand.67 - score = 104.10; SMART UBQ (SM00213) at aa 8-78, E()=2.01e-09; pfam:UCH (PF00443) at aa 111-531, E()=4.40e-47; ubiquitin C-terminal hydrolase, putative 1503100 3863338 TA10095 Theileria annulata ubiquitin C-terminal hydrolase, putative XP_953401.1 1501258 R 5874 CDS TA10080 3863335 join(1503159..1503263,1503460..1503573,1503603..1503788,1503819..1504068,1504099..1504158,1504187..1504284,1504315..1504623) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.87 - score = 28.50; uncharacterized protein 1504623 3863335 TA10080 Theileria annulata uncharacterized protein XP_953402.1 1503159 D 5874 CDS TA10075 3863334 complement(join(1504721..1504866,1504896..1504943,1504973..1505144,1505174..1505244,1505274..1505363,1505393..1505512,1505555..1505767,1505818..1505956)) 4 1 NC_011098.1 Tap579b07.q1c.cand.66 - score = 30.90; SMART pfam:Peptidase_M24 (PF00557) at aa 87-327, E()=7.30e-46; methionine aminopeptidase, putative 1505956 3863334 TA10075 Theileria annulata methionine aminopeptidase, putative XP_953403.1 1504721 R 5874 CDS TA10070 3863333 join(1506137..1506189,1506229..1506283,1506316..1506382,1506416..1506445,1506477..1506581,1506611..1506792) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.88 - score = 26.00; SMART pfam:efhand (PF00036) at aa 16-44, E()=3.40e-05; uncharacterized protein 1506792 3863333 TA10070 Theileria annulata uncharacterized protein XP_953404.1 1506137 D 5874 CDS TA10065 3863332 complement(join(1506868..1507265,1507311..1507341)) 4 1 NC_011098.1 SMART KOW (SM00739) at aa 53-80, E()=4.73e-05; 60S ribosomal protein L26, putative 1507341 3863332 TA10065 Theileria annulata 60S ribosomal protein L26, putative XP_953405.1 1506868 R 5874 CDS TA10060 3863331 complement(join(1508708..1508857,1508887..1509234,1509265..1509571,1509604..1509681,1509718..1509883,1509916..1509987,1510025..1510092,1510114..1510237,1510346..1510376)) 4 1 NC_011098.1 Tap579b07.q1c.cand.64 - score = 34.20; SMART 4 WD40 (SM00320) domains at aa 66-106, E()=2.82e-08; 115-155, E()=1.26e-05; 160-196, E()=3.82e+01; 199-246, E()=9.21e+00; 1 probable transmembrane helix predicted for TA10060 by TMHMM2.0 at aa 39-61; Signal anchor predicted for TA10060 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.992) with cleavage site probability 0.000 between residues 57 and 58; coronin, putative 1510376 3863331 TA10060 Theileria annulata coronin, putative XP_953406.1 1508708 R 5874 CDS TA10055 3863330 1511305..1512855 4 1 NC_011098.1 Tap579b07.q1c.C.cand.89 - score = 86.32; Signal peptide predicted for TA10055 by SignalP 2.0 HMM (Signal peptide probability 0.840, signal anchor probability 0.000) with cleavage site probability 0.184 between residues 31 and 32; uncharacterized protein 1512855 3863330 TA10055 Theileria annulata uncharacterized protein XP_953407.1 1511305 D 5874 CDS TA10050 3863329 join(1513132..1513197,1513288..1513494,1513534..1513617,1513648..1513740,1513771..1513902,1513935..1514042,1514074..1514151,1514182..1514436,1514465..1514574,1514605..1514718,1514750..1515042,1515072..1515244) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.89 - score = 86.32; SMART DEXDc (SM00487) at aa 97-310, E()=5.00e-45; HELICc (SM00490) at aa 347-428, E()=1.02e-27; DEAD-box family helicase, putative 1515244 3863329 TA10050 Theileria annulata DEAD-box family helicase, putative XP_953408.1 1513132 D 5874 CDS TA10045 3863328 join(1515780..1517102,1517134..1517610) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.90 - score = 68.29; uncharacterized protein 1517610 3863328 TA10045 Theileria annulata uncharacterized protein XP_953409.1 1515780 D 5874 CDS TA10040 3863327 complement(join(1517659..1518032,1518062..1518195,1518225..1518385,1518416..1518501,1518531..1518689,1518721..1518835,1518933..1519115)) 4 1 NC_011098.1 Tap579b07.q1c.cand.62 - score = 25.80; SMART pfam:tRNA-synt_1b (PF00579) at aa 51-329, E()=1.10e-39; tryptophan-tRNA synthetase, putative 1519115 3863327 TA10040 Theileria annulata tryptophan-tRNA synthetase, putative XP_953410.1 1517659 R 5874 CDS TA10035 3863326 join(1519377..1519763,1519801..1520015,1520046..1520145,1520178..1520213,1520243..1520840,1520876..1521017,1521057..1521886,1521922..1522082,1522111..1522179,1522208..1522327,1522357..1522406,1522435..1522475,1522529..1522719) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.91 - score = 98.51; SMART STYKc (SM00221) at aa 682-976, E()=2.97e-07; protein kinase, putative 1522719 3863326 TA10035 Theileria annulata protein kinase, putative XP_953411.1 1519377 D 5874 CDS TA10025 3863324 complement(join(1522742..1523394,1523434..1523455)) 4 1 NC_011098.1 uncharacterized protein 1523455 3863324 TA10025 Theileria annulata uncharacterized protein XP_953412.1 1522742 R 5874 CDS TA10020 3863323 join(1523707..1524477,1524509..1524678,1524711..1525098,1525129..1525213,1525244..1525450,1525482..1525526,1525558..1525778,1525810..1525957,1525999..1526110,1526140..1526455) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.92 - score = 51.49; SMART 2 transmembrane domains at 187-209 and 230-249; pfam:DUF221 (PF02714) at 441-819, E()=2.40e-05; 8 probable transmembrane helices predicted for TA10020 by TMHMM2.0 at aa 7-29, 187-209, 230-249, 505-527, 548-570, 574-596, 609-631 and 708-730; uncharacterized protein 1526455 3863323 TA10020 Theileria annulata uncharacterized protein XP_953413.1 1523707 D 5874 CDS TA10015 3863322 complement(join(1526889..1527037,1527136..1527289,1527371..1527520)) 4 1 NC_011098.1 Tap579b07.q1c.cand.60 - score = 9.09; uncharacterized protein 1527520 3863322 TA10015 Theileria annulata uncharacterized protein XP_953414.1 1526889 R 5874 CDS TA10010 3863321 complement(join(1527620..1527790,1527821..1527910,1527941..1527965,1527989..1528041,1528071..1528289,1528321..1528434,1528466..1528588,1528623..1528815,1528880..1529043,1529168..1529355,1529393..1529572,1529677..1529776)) 4 1 NC_011098.1 uncharacterized protein 1529776 3863321 TA10010 Theileria annulata uncharacterized protein XP_953415.1 1527620 R 5874 CDS TA10005 3863320 complement(join(1529914..1530158,1530188..1530423,1530453..1530582,1530614..1530679,1530718..1530814,1530847..1530957)) 4 1 NC_011098.1 Tap579b07.q1c.cand.59 - score = 165.13; SMART pfam:Vps26 (PF03643) at aa 3-277, E()=8.20e-110; vacuolar protein sorting (Vps) 26 homologue, putative 1530957 3863320 TA10005 Theileria annulata vacuolar protein sorting (Vps) 26 homologue, putative XP_953416.1 1529914 R 5874 CDS TA10000 3863319 complement(1531327..1536111) 4 1 NC_011098.1 Tap579b07.q1c.cand.59 - score = 165.13; SMART 2 transmembrane domains at aa 349-371 and 378-400; 2 probable transmembrane helices predicted for TA10000 by TMHMM2.0 at aa 349-371 and 378-400; uncharacterized protein 1536111 3863319 TA10000 Theileria annulata uncharacterized protein XP_953417.1 1531327 R 5874 CDS TA09995 3863318 1536628..1539483 4 1 NC_011098.1 Tap579b07.q1c.C.cand.93 - score = 65.11; SMART DEXDc2 (unknown) at aa 14-319, E()=2.48e-49; HELICc2 (unknown) at aa 648-808, E()=4.97e-40; helicase, putative 1539483 3863318 TA09995 Theileria annulata helicase, putative XP_953418.1 1536628 D 5874 CDS TA09990 3863317 complement(join(1539629..1540470,1540507..1540780)) 4 1 NC_011098.1 Tap579b07.q1c.cand.58 - score = 37.73; SMART 1 transmembrane domain at aa 178-200; 1 probable transmembrane helix predicted for TA09990 by TMHMM2.0 at aa 178-200; uncharacterized protein 1540780 3863317 TA09990 Theileria annulata uncharacterized protein XP_953419.1 1539629 R 5874 CDS TA09985 3863316 complement(join(1541493..1542023,1542055..1542141,1542171..1542833,1542867..1542940,1542970..1543292,1543326..1543389,1543421..1543640,1543674..1543799,1543837..1543950)) 4 1 NC_011098.1 Tap579b07.q1c.cand.57 - score = 80.63; uncharacterized protein 1543950 3863316 TA09985 Theileria annulata uncharacterized protein XP_953420.1 1541493 R 5874 CDS TA09980 3863315 join(1544576..1544671,1544703..1544782,1544826..1544892,1544915..1544999,1545029..1545193,1545229..1545296,1545326..1545431,1545462..1545625,1545666..1545718,1545748..1545871,1545901..1545944,1545976..1546078,1546108..1546257) 4 1 NC_011098.1 SMART pfam:MMR_HSR1 (PF01926) at aa 13-306, E()=5.60e-05; GTPase, putative 1546257 3863315 TA09980 Theileria annulata GTPase, putative XP_953421.1 1544576 D 5874 CDS TA09970 3863313 complement(join(1546441..1546509,1546543..1546618,1546649..1546785,1546843..1546917,1546954..1547042,1547081..1547166,1547199..1547395)) 4 1 NC_011098.1 uncharacterized protein 1547395 3863313 TA09970 Theileria annulata uncharacterized protein XP_953422.1 1546441 R 5874 CDS TA09965 3863312 complement(1547461..1548663) 4 1 NC_011098.1 Tap579b07.q1c.cand.56 - score = 43.78; uncharacterized protein 1548663 3863312 TA09965 Theileria annulata uncharacterized protein XP_953423.1 1547461 R 5874 CDS TA09960 3863311 complement(join(1549672..1550131,1550171..1550337,1550367..1550585,1550615..1550739,1550775..1550921,1550956..1551004,1551034..1551513)) 4 1 NC_011098.1 Tap579b07.q1c.cand.55 - score = 40.53; SMART STYKc (SM00221) at aa 30-457, E()=9.36e-08; cell-cycle-related serine/threonine protein kinase, CDK homologue, putative 1551513 3863311 TA09960 Theileria annulata cell-cycle-related serine/threonine protein kinase, CDK homologue, putative XP_953424.1 1549672 R 5874 CDS TA09955 3863115 complement(join(1552033..1552110,1552150..1552236,1552277..1552433,1552489..1552520)) 4 1 NC_011098.1 Tap579b07.q1c.cand.54 - score = 26.90; SMART pfam:DUF343 (PF03966) at aa 1-115, E()=1.40e-03; uncharacterized protein 1552520 3863115 TA09955 Theileria annulata uncharacterized protein XP_953425.1 1552033 R 5874 CDS TA09950 3863114 complement(join(1552551..1553088,1553121..1553262,1553332..1553430,1553451..1553755,1553787..1553861,1553891..1554011,1554043..1554117,1554157..1554349)) 4 1 NC_011098.1 SMART pfam:PRP38 (PF03371) at aa 124-306, E()=5.00e-12; 1 transmembrane domain at aa 496-513; 1 probable transmembrane helix predicted for TA09950 by TMHMM2.0 at aa 496-513; splicing component, putative 1554349 3863114 TA09950 Theileria annulata splicing component, putative XP_953426.1 1552551 R 5874 CDS TA09945 3863113 join(1554848..1555022,1555053..1555334,1555364..1555480,1555512..1555750) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.95 - score = 31.83; SMART 1 transmembrane domain at aa 242-264; 1 probable transmembrane helix predicted for TA09945 by TMHMM2.0 at aa 242-264; uncharacterized protein 1555750 3863113 TA09945 Theileria annulata uncharacterized protein XP_953427.1 1554848 D 5874 CDS TA09940 3863112 complement(join(1555762..1556148,1556179..1556288,1556318..1556441,1556475..1556674,1556719..1556760,1556840..1556933)) 4 1 NC_011098.1 Tap579b07.q1c.cand.52 - score = 70.43; SMART 1 transmembrane domain at aa 7-29; pfam:Fibrillarin (PF01269) at aa 70-312, E()=2.00e-155; 1 probable transmembrane helix predicted for TA09940 by TMHMM2.0 at aa 7-29; fibrillarin, putative 1556933 3863112 TA09940 Theileria annulata fibrillarin, putative XP_953428.1 1555762 R 5874 CDS TA09935 3863111 complement(join(1556960..1557106,1557141..1557196,1557232..1557333,1557367..1557453,1557488..1557998,1558027..1558136,1558168..1558311,1558341..1558448,1558583..1558657,1558687..1558846,1558881..1558932,1558972..1559236,1559268..1559351,1559469..1559712,1559744..1559844,1559876..1559937,1559970..1560036,1560068..1560109,1560139..1560207,1560237..1560302,1560335..1560483,1560513..1561103,1561186..1561217,1561312..1561518,1561591..1561653)) 4 1 NC_011098.1 SMART LH2 (SM00308) at aa 163-271, E()=7.17e-03; LCCL (SM00603) at aa 650-738, E()=2.38e-19; 984-1072, E()=4.09e-05; 1091-1178, E()=2.80e-16; SR (SM00202) at aa 402-515, E()=3.99e-10; uncharacterized protein 1561653 3863111 TA09935 Theileria annulata uncharacterized protein XP_953429.1 1556960 R 5874 CDS TA09930 3863110 complement(join(1561743..1561920,1561952..1561989,1562022..1562236,1562268..1562373,1562403..1562456,1562492..1562643,1562678..1562816,1562856..1563173)) 4 1 NC_011098.1 SMART pfam:Radical_SAM (PF04055) at aa 103-272, E()=6.30e-11; uncharacterized protein 1563173 3863110 TA09930 Theileria annulata uncharacterized protein XP_953430.1 1561743 R 5874 CDS TA09925 3863109 join(1563984..1564300,1564331..1564638,1564670..1564881) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.96 - score = 25.13; SMART 6 transmembrane domains at aa 32-54, 83-102, 117-139, 159-178, 193-215 and 217-239; 6 probable transmembrane helices predicted for TA09925 by TMHMM2.0 at aa 32-54, 83-102, 117-139, 159-178, 193-215 and 217-239; uncharacterized protein 1564881 3863109 TA09925 Theileria annulata uncharacterized protein XP_953431.1 1563984 D 5874 CDS TA09915 3863107 complement(join(1564959..1565341,1565381..1565639)) 4 1 NC_011098.1 Tap579b07.q1c.cand.50 - score = 21.67; SMART pfam:Metallophos (PF00149) at aa 10-128, E()=5.30e-02; vacuolar protein sorting, VPS29 homologue, putative 1565639 3863107 TA09915 Theileria annulata vacuolar protein sorting, VPS29 homologue, putative XP_953432.1 1564959 R 5874 CDS TA09910 3863106 complement(join(1565760..1565958,1566015..1566890,1566920..1567059,1567091..1567203,1567235..1567379,1567410..1567763,1567793..1568298,1568328..1568745)) 4 1 NC_011098.1 Tap579b07.q1c.cand.49 - score = 85.42; SMART 2 pfam:Clp_N (PF02861) at aa 85-137, E()=3.00e-05; 161-206, E()=9.70e-03; 2 AAA domains (SM00382) at aa 289-444, E()=1.21e-10; 618-768, E()=1.36e-09; endopeptidase (CLP homologue) ATP-binding chain, putative 1568745 3863106 TA09910 Theileria annulata endopeptidase (CLP homologue) ATP-binding chain, putative XP_953433.1 1565760 R 5874 CDS TA09905 3863105 complement(join(1568988..1570141,1570194..1570737)) 4 1 NC_011098.1 Tap579b07.q1c.cand.48 - score = 51.40; SMART pfam:PPR (PF01535) at aa 224-258, E()=3.20e-05; Apicoplast targetting peptide predicted by the PlasmoAP tool; Signal anchor predicted for TA09905 by SignalP 2.0 HMM (Signal peptide probability 0.183, signal anchor probability 0.714) with cleavage site probability 0.036 between residues 40 and 41; uncharacterized protein 1570737 3863105 TA09905 Theileria annulata uncharacterized protein XP_953434.1 1568988 R 5874 CDS TA09900 3863104 complement(join(1570881..1571011,1571044..1571128,1571168..1571320,1571352..1571570)) 4 1 NC_011098.1 Tap579b07.q1c.cand.48 - score = 51.40; SMART pfam:DUF59 (PF01883) at aa 71-150, E()=4.80e-09; uncharacterized protein 1571570 3863104 TA09900 Theileria annulata uncharacterized protein XP_953435.1 1570881 R 5874 CDS TA09895 3863103 complement(join(1571812..1572036,1572068..1572173,1572205..1572298,1572312..1572545,1572578..1572821,1572852..1573286)) 4 1 NC_011098.1 5 probable transmembrane helices predicted for TA09895 by TMHMM2.0 at aa 127-149, 227-249, 259-281, 286-308 and 328-350; uncharacterized protein 1573286 3863103 TA09895 Theileria annulata uncharacterized protein XP_953436.1 1571812 R 5874 CDS TA09890 3863102 join(1574506..1575205,1575240..1577590,1577621..1578523,1578616..1581402,1581436..1581639,1581735..1584958,1585051..1585171,1585204..1585563,1585661..1585798) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.97 - score = 266.09; SMART 3 PHD (SM00249) at aa 1211-1267, E()=1.91e+00; 1616-1667, E()=3.15e-02; 2975-3045, E()=1.31e+00; BROMO (SM00297) at aa 1269-1371, E()=6.40e-06; SET (SM00317) at aa 3466-3592, E()=5.78e-37; uncharacterized protein 1585798 3863102 TA09890 Theileria annulata uncharacterized protein XP_953437.1 1574506 D 5874 CDS TA09885 3863101 complement(join(1585920..1586590,1586641..1586935)) 4 1 NC_011098.1 Tap579b07.q1c.cand.46 - score = 64.75; SMART pfam:Ubie_methyltran (PF01209) at aa 32-319, E()=2.40e-78; GPI-Anchor Signal predicted for TA09885 by DGPI v2.04, no cleavage site predicted; methyltransferase, putative 1586935 3863101 TA09885 Theileria annulata methyltransferase, putative XP_953438.1 1585920 R 5874 CDS TA09880 3863100 complement(join(1587056..1587133,1587163..1587254,1587305..1587683,1587741..1587839,1587898..1588914)) 4 1 NC_011098.1 uncharacterized protein 1588914 3863100 TA09880 Theileria annulata uncharacterized protein XP_953439.1 1587056 R 5874 CDS TA09875 3863099 join(1589633..1589817,1589853..1591045,1591192..1591436) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.98 - score = 28.81; SMART pfam:UPF0020 (PF01170) at aa 222-462, E()=2.60e-02; methylase, putative 1591436 3863099 TA09875 Theileria annulata methylase, putative XP_953440.1 1589633 D 5874 CDS TA09870 3863098 1591983..1595051 4 1 NC_011098.1 Tap579b07.q1c.C.cand.99 - score = 13.71; SMART 15 transmembrane domains 44-66, 108-130, 134-156, 284-301, 308-330, 340-362, 561-583, 593-611, 618-640, 655-677, 684-706, 75-777, 807-829, 839-861 and 987-1009; pfam:COX2_TM (PF02790) at aa 180-251, E()=7.50e-02; pfam:Glycos_transf_4 (PF00953) at aa 398-552, E()=9.10e-02; 22 probable transmembrane helices predicted for TA09870 by TMHMM2.0 at aa 44-66, 108-130, 134-156, 163-185, 200-222, 227-249, 284-301, 308-330, 340-362, 400-419, 429-451, 471-490, 526-548, 561-583, 593-611, 618-640, 655-677, 684-706, 755-777, 807-829, 839-861 and 987-1009; uncharacterized protein 1595051 3863098 TA09870 Theileria annulata uncharacterized protein XP_953441.1 1591983 D 5874 CDS TA09860 3863310 complement(join(1595198..1595448,1595484..1595594,1595629..1595716,1595749..1596036,1596103..1596165,1596195..1596368,1596398..1596498,1596576..1596823,1596855..1597146,1597239..1597298,1597360..1597465)) 4 1 NC_011098.1 Tap579b07.q1c.cand.45 - score = 97.78; uncharacterized protein 1597465 3863310 TA09860 Theileria annulata uncharacterized protein XP_953442.1 1595198 R 5874 CDS TA09855 3863309 complement(join(1597661..1597783,1597846..1598127,1598157..1598273,1598303..1598369,1598399..1598445,1598508..1598601,1598631..1598747,1598778..1598895,1598925..1599061,1599112..1599197,1599238..1599351)) 4 1 NC_011098.1 Tap579b07.q1c.cand.45 - score = 97.78; SMART 4 WD40 (SM00320) at aa 178-221, E()=8.59e-01; 245-285, E()=1.78e-05; 288-326, E()=5.15e-02; 344-383, E()=2.77e-01; microtubule-associated protein (YTM1 homologue), putative 1599351 3863309 TA09855 Theileria annulata microtubule-associated protein (YTM1 homologue), putative XP_953443.1 1597661 R 5874 CDS TA09850 3863308 join(1599799..1602921,1602952..1603080) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.100 - score = 77.99; SMART ZnF_NFX (SM00438) at aa 347-374, E()=0.00e+00; AWS (SM00570) at aa 721-765, E()=8.65e-02; SET (SM00317) at aa 768-896, E()=3.22e-35; uncharacterized protein 1603080 3863308 TA09850 Theileria annulata uncharacterized protein XP_953444.1 1599799 D 5874 CDS TA09845 3863307 join(1603114..1603215,1603245..1603331,1603385..1603547,1603608..1603939) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.100 - score = 77.99; SMART 2 transmembrane domains at aa 21-40, 78-100; 2 probable transmembrane helices predicted for TA09845 by TMHMM2.0 at aa 21-40 and 78-100; uncharacterized protein 1603939 3863307 TA09845 Theileria annulata uncharacterized protein XP_953445.1 1603114 D 5874 CDS TA09840 3863306 join(1604257..1607233,1607336..1608540,1608648..1609080,1609279..1609426,1609533..1609686,1609762..1609968,1610168..1610259,1610355..1610535,1610688..1610972,1611122..1611301,1611442..1611645,1611849..1611997,1612217..1612634) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.101 - score = 116.11; SMART POLBc (SM00486) at aa 295-976, E()=1.02e-60; DNA polymerase epsilon (catalytic subunit), putative 1612634 3863306 TA09840 Theileria annulata DNA polymerase epsilon (catalytic subunit), putative XP_953446.1 1604257 D 5874 CDS TA09835 3863305 complement(join(1613989..1614043,1614072..1614171,1614284..1614323,1614359..1614421,1614540..1614635)) 4 1 NC_011098.1 uncharacterized protein 1614635 3863305 TA09835 Theileria annulata uncharacterized protein XP_953447.1 1613989 R 5874 CDS TA09830 3863304 join(1614722..1614891,1614923..1615112,1615144..1615197,1615275..1615335,1615367..1615406,1615438..1615455,1615599..1615627,1615661..1615712,1615848..1615910,1615943..1615971,1616000..1616076,1616104..1616182,1616271..1616398) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.102 - score = 49.39; uncharacterized protein 1616398 3863304 TA09830 Theileria annulata uncharacterized protein XP_953448.1 1614722 D 5874 CDS TA09825 3863303 complement(1616509..1617051) 4 1 NC_011098.1 Tap579b07.q1c.cand.43 - score = 11.68; SMART 1 transmembrane domain at aa 99-121; 1 probable transmembrane helix predicted for TA09825 by TMHMM2.0 at aa 99-121; uncharacterized protein 1617051 3863303 TA09825 Theileria annulata uncharacterized protein XP_953449.1 1616509 R 5874 CDS TA09820 3863302 join(1617170..1617245,1617357..1617554,1617586..1617709,1617749..1617786,1617811..1617846,1617864..1617880,1617915..1618006,1618149..1618339,1618451..1618553,1618584..1618833,1618866..1619031,1619062..1619123) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.103 - score = 19.95; SMART S_TKc (SM00220) at aa 10-297, E()=1.66e-79; pfam:KA1 (PF02149) at aa 397-445, E()=4.00e-02; serine/threonine kinase, putative 1619123 3863302 TA09820 Theileria annulata serine/threonine kinase, putative XP_953450.1 1617170 D 5874 CDS TA09815 3863301 complement(1619432..1621108) 4 1 NC_011098.1 Tap579b07.q1c.cand.42 - score = 30.52; SMART pfam:DUF529 (PF04385) at aa 119-282, E()=5.00e-07; 363-500, E()=1.70e-87; SfiI-subtelomeric fragment related protein family member, putative 1621108 3863301 TA09815 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953451.1 1619432 R 5874 CDS TA11380 3862932 complement(join(1621634..1621810,1622023..1622307,1622398..1622451,1622603..1622863,1622980..1623461,1623557..1623905)) 4 1 NC_011098.1 Tap579b07.q1c.cand.41 - score = 25.52; SMART DEXDc (SM00487) at aa 89-292, E()=1.30e-52; HELICc (SM00490) at aa 328-409, E()=8.55e-21; DEAD-box family ATP-dependent helicase, putative 1623905 3862932 TA11380 Theileria annulata DEAD-box family ATP-dependent helicase, putative XP_953452.1 1621634 R 5874 CDS TA11375 3862931 join(1624021..1626268,1626418..1626710) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.104 - score = 45.92; SMART ZnF_RBZ (SM00547) at aa 294-318, E()=1.24e-06; ZnF_C2H2 (SM00355) at aa 812-837, E()=2.12e+01; uncharacterized protein 1626710 3862931 TA11375 Theileria annulata uncharacterized protein XP_953453.1 1624021 D 5874 CDS TA11370 3862930 join(1626873..1627219,1627257..1627483,1627515..1627645,1627675..1627713,1627745..1627885,1628056..1628279,1628311..1628377) 4 1 NC_011098.1 SMART pfam:Tfb4 (PF03850) at aa 27-370, E()=1.10e-04; 5 probable transmembrane helices predicted for TA11370 by TMHMM2.0 at aa 56-78, 98-120, 169-191, 277-299 and 330-352; uncharacterized protein 1628377 3862930 TA11370 Theileria annulata uncharacterized protein XP_953454.1 1626873 D 5874 CDS TA11365 3862929 complement(join(1628724..1629070,1629236..1629414,1629516..1629661)) 4 1 NC_011098.1 Tap579b07.q1c.cand.40 - score = 7.94; SMART pfam:ER_lumen_recept (PF00810) at aa 2-209, E()=1.00e-111; 3 probable transmembrane helices predicted for TA11365 by TMHMM2.0 at aa 60-82, 103-125 and 182-204; Signal peptide predicted for TA11365 by SignalP 2.0 HMM (Signal peptide probability 0.733, signal anchor probability 0.063) with cleavage site probability 0.459 between residues 28 and 29; endoplasmic reticulum lumen protein retaining receptor (ERD2 homologue), putative 1629661 3862929 TA11365 Theileria annulata endoplasmic reticulum lumen protein retaining receptor (ERD2 homologue), putative XP_953455.1 1628724 R 5874 CDS TA11360 3862928 complement(join(1629954..1630122,1630220..1631872,1632131..1633662)) 4 1 NC_011098.1 SMART 3 transmembrane domains at aa 36-58, 93-115 and 128-150; ZnF_NFX (SM00438) at aa 547-562, E()=0.00e+00; Apicoplast targetting peptide predicted by the PlasmoAP tool; 3 probable transmembrane helices predicted for TA11360 by TMHMM2.0 at aa 36-58, 93-115 and 128-150; Signal anchor predicted for TA11360 by SignalP 2.0 HMM (Signal peptide probability 0.000, signal anchor probability 0.993) with cleavage site probability 0.000 between residues 62 and 63; uncharacterized protein 1633662 3862928 TA11360 Theileria annulata uncharacterized protein XP_953456.1 1629954 R 5874 CDS TA11355 3862927 join(1634003..1634010,1634110..1634216,1634315..1634398,1634453..1634489,1634575..1634689,1634722..1634811,1634903..1634959) 4 1 NC_011098.1 SMART 2 transmembrane domains at aa 113-135 and 140-162; 2 probable transmembrane helices predicted for TA11355 by TMHMM2.0 at aa 113-135 and 140-162; uncharacterized protein 1634959 3862927 TA11355 Theileria annulata uncharacterized protein XP_953457.1 1634003 D 5874 CDS TA11350 3862926 complement(join(1635198..1635431,1635568..1635741,1635809..1636165)) 4 1 NC_011098.1 Tap579b07.q1c.cand.38 - score = 15.05; SMART pfam:proteasome (PF00227) at aa 28-215, E()=3.00e-53; proteasome subunit, putative 1636165 3862926 TA11350 Theileria annulata proteasome subunit, putative XP_953458.1 1635198 R 5874 CDS TA11345 3862925 join(1636545..1636714,1636776..1636863,1637061..1637150,1637246..1637395,1637496..1637708) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.107 - score = 17.10; SMART pfam:proteasome (PF00227) at aa 26-209, E()=1.70e-41; proteasome subunit, putative 1637708 3862925 TA11345 Theileria annulata proteasome subunit, putative XP_953459.1 1636545 D 5874 CDS TA11340 3862924 join(1637862..1638130,1638198..1638303,1638367..1638412,1638441..1638527,1638805..1638986,1639186..1639284,1639315..1639386) 4 1 NC_011098.1 SMART RING (SM00184) at aa 58-97, E()=5.56e-03; ZnF_NFX (SM00438) at aa 79-99, E()=0.00e+00; uncharacterized protein 1639386 3862924 TA11340 Theileria annulata uncharacterized protein XP_953460.1 1637862 D 5874 CDS TA11335 3862923 complement(1639545..1639937) 4 1 NC_011098.1 Tap579b07.q1c.cand.37 - score = 8.05; uncharacterized protein 1639937 3862923 TA11335 Theileria annulata uncharacterized protein XP_953461.1 1639545 R 5874 CDS TA11330 3862922 complement(join(1640030..1642471,1642567..1642750,1642854..1642990)) 4 1 NC_011098.1 Tap579b07.q1c.cand.36 - score = 63.24; SMART pfam:FtsJ (PF01728) at aa 24-202, E()=1.90e-74; uncharacterized protein 1642990 3862922 TA11330 Theileria annulata uncharacterized protein XP_953462.1 1640030 R 5874 CDS TA11325 3862921 complement(join(1643152..1643201,1643264..1643367,1643449..1643733,1643869..1643972)) 4 1 NC_011098.1 Tap579b07.q1c.cand.36 - score = 63.24; SMART pfam:ATP-synt_C (PF00137) at aa 17-82, E()=3.30e-04; 113-178, E()=5.80e-09; 4 probable transmembrane helices predicted for TA11325 by TMHMM2.0 at aa 15-37, 58-80, 115-137 and 157-179; Signal anchor predicted for TA11325 by SignalP 2.0 HMM (Signal peptide probability 0.078, signal anchor probability 0.910) with cleavage site probability 0.053 between residues 36 and 37; vacuolar proton-translocating ATPase, putative 1643972 3862921 TA11325 Theileria annulata vacuolar proton-translocating ATPase, putative XP_953463.1 1643152 R 5874 CDS TA11320 3862920 1644191..1645000 4 1 NC_011098.1 Tap579b07.q1c.C.cand.109 - score = 12.55; SMART pfam:V-SNARE (PF05008) at aa 103-245, E()=4.00e-02; 1 transmembrane domain at aa 247-266; 1 probable transmembrane helix predicted for TA11320 by TMHMM2.0 at aa 247-266; uncharacterized protein 1645000 3862920 TA11320 Theileria annulata uncharacterized protein XP_953464.1 1644191 D 5874 CDS TA11315 3862919 join(1645201..1645555,1645676..1646093,1646123..1646262,1646294..1646547) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.110 - score = 25.78; uncharacterized protein 1646547 3862919 TA11315 Theileria annulata uncharacterized protein XP_953465.1 1645201 D 5874 CDS TA11310 3862918 1647717..1650032 4 1 NC_011098.1 Tap579b07.q1c.C.cand.111 - score = 48.06; uncharacterized protein 1650032 3862918 TA11310 Theileria annulata uncharacterized protein XP_953466.1 1647717 D 5874 CDS TA11305 3862917 complement(join(1650085..1650353,1650388..1650463)) 4 1 NC_011098.1 Tap579b07.q1c.cand.35 - score = 10.85; SMART pfam:S10_plectin (PF03501) at aa 11-106, E()=2.10e-48; 40S ribosomal protein S10, putative 1650463 3862917 TA11305 Theileria annulata 40S ribosomal protein S10, putative XP_953467.1 1650085 R 5874 CDS TA11300 3862916 join(1650937..1651564,1651691..1652433) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.112 - score = 20.51; uncharacterized protein 1652433 3862916 TA11300 Theileria annulata uncharacterized protein XP_953468.1 1650937 D 5874 CDS TA11295 3862914 join(1652558..1652965,1652996..1653148,1653178..1653237,1653268..1653438,1653469..1653546,1653580..1653750) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.113 - score = 75.73; SMART RRM (SM00360) at aa 214-297, E()=4.03e-19; uncharacterized protein 1653750 3862914 TA11295 Theileria annulata uncharacterized protein XP_953469.1 1652558 D 5874 CDS TA11297 3862915 1653826..1654296 4 1 NC_011098.1 uncharacterized protein 1654296 3862915 TA11297 Theileria annulata uncharacterized protein XP_953470.1 1653826 D 5874 CDS TA11285 3862913 join(1656454..1656503,1656535..1656757,1656787..1656834,1657106..1657201,1657231..1657431) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.114 - score = 12.56; uncharacterized protein 1657431 3862913 TA11285 Theileria annulata uncharacterized protein XP_953471.1 1656454 D 5874 CDS TA11280 3862912 join(1658050..1658254,1658293..1658463,1658496..1658582,1658611..1658680,1658713..1658759,1658794..1658838,1658873..1659204) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.115 - score = 36.85; uncharacterized protein 1659204 3862912 TA11280 Theileria annulata uncharacterized protein XP_953472.1 1658050 D 5874 CDS TA11275 3862911 join(1659278..1659593,1659624..1659964,1659995..1660098,1660164..1660325,1660409..1660478) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.116 - score = 28.96; SMART pfam:DUF143 (PF02410) at aa 207-314, E()=3.40e-04; uncharacterized protein 1660478 3862911 TA11275 Theileria annulata uncharacterized protein XP_953473.1 1659278 D 5874 CDS TA11270 3862910 complement(join(1660768..1660927,1660999..1661417)) 4 1 NC_011098.1 Tap579b07.q1c.cand.34 - score = 15.66; SMART pfam:Ribosomal_S7e (PF01251) at aa 3-192, E()=1.60e-43; 40S ribosomal protein S7 (RPS7), putative 1661417 3862910 TA11270 Theileria annulata 40S ribosomal protein S7 (RPS7), putative XP_953474.1 1660768 R 5874 CDS TA11265 3862909 join(1662182..1663264,1663332..1663414,1663447..1663587,1663620..1664055) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.117 - score = 42.42; uncharacterized protein 1664055 3862909 TA11265 Theileria annulata uncharacterized protein XP_953475.1 1662182 D 5874 CDS TA11260 3862908 1664312..1665172 4 1 NC_011098.1 Tap579b07.q1c.C.cand.118 - score = 22.65; SMART DnaJ (SM00271) at aa 11-76, E()=3.73e-04; uncharacterized protein 1665172 3862908 TA11260 Theileria annulata uncharacterized protein XP_953476.1 1664312 D 5874 CDS TA11255 3862907 complement(join(1665211..1665317,1665388..1665493,1665522..1665582,1665612..1665676,1665708..1665747,1665779..1665848,1665879..1665930,1665960..1666100,1666129..1666406,1666445..1666606,1666660..1666723)) 4 1 NC_011098.1 Tap579b07.q1c.cand.33 - score = 37.83; SMART pfam:Ribosomal_L21p (PF00829) at aa 202-299, E()=1.60e-07; 50S ribosomal protein L21, putative 1666723 3862907 TA11255 Theileria annulata 50S ribosomal protein L21, putative XP_953477.1 1665211 R 5874 CDS TA11250 3862906 join(1667086..1667461,1667494..1667705,1667738..1667882,1667913..1668033,1668074..1668188,1668219..1668659) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.119 - score = 55.31; SMART RIO (SM00090) at aa 65-288, E()=5.87e-52; uncharacterized protein 1668659 3862906 TA11250 Theileria annulata uncharacterized protein XP_953478.1 1667086 D 5874 CDS TA11245 3862905 complement(1668737..1669570) 4 1 NC_011098.1 uncharacterized protein 1669570 3862905 TA11245 Theileria annulata uncharacterized protein XP_953479.1 1668737 R 5874 CDS TA11240 3862904 join(1670610..1671164,1671194..1671237,1671276..1671300,1671330..1671434,1671465..1671556,1671596..1671809) 4 1 NC_011098.1 SMART pfam:UPF0160 (PF03690) at aa 1-334, E()=1.30e-63; uncharacterized protein 1671809 3862904 TA11240 Theileria annulata uncharacterized protein XP_953480.1 1670610 D 5874 CDS TA11235 3862903 complement(join(1671876..1672148,1672177..1672287,1672317..1672379,1672409..1672549,1672580..1672755,1672792..1672881,1672917..1673118)) 4 1 NC_011098.1 Tap579b07.q1c.cand.31 - score = 26.23; uncharacterized protein 1673118 3862903 TA11235 Theileria annulata uncharacterized protein XP_953481.1 1671876 R 5874 CDS TA11230 3862902 join(1673203..1673546,1673582..1673721,1673753..1673967,1674003..1674142,1674175..1674297,1674327..1674451,1674511..1674600,1674630..1675212,1675242..1675374) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.121 - score = 49.00; SMART 1 transmembrane domain at aa 5-27; pfam:Peptidase_M22 (PF00814) at aa 97-403, E()=5.90e-56; 1 probable transmembrane helix predicted for TA11230 by TMHMM2.0 at aa 5-27; Signal peptide predicted for TA11230 by SignalP 2.0 HMM (Signal peptide probability 0.846, signal anchor probability 0.000) with cleavage site probability 0.372 between residues 17 and 18; glycoprotease, putative 1675374 3862902 TA11230 Theileria annulata glycoprotease, putative XP_953482.1 1673203 D 5874 CDS TA11225 3862901 complement(1675385..1676671) 4 1 NC_011098.1 Tap579b07.q1c.cand.30 - score = 26.82; SMART pfam:Ribosomal_S10 (PF00338) at aa 204-301, E()=2.50e-03; 30S ribosomal protein S10-like protein, putative 1676671 3862901 TA11225 Theileria annulata 30S ribosomal protein S10-like protein, putative XP_953483.1 1675385 R 5874 CDS TA11220 3862900 complement(join(1676792..1676972,1677002..1677103,1677133..1677489,1677521..1677660,1677693..1678472,1678508..1678716,1678802..1678943)) 4 1 NC_011098.1 Tap579b07.q1c.cand.29 - score = 60.91; SMART pfam:RLI (PF04088) at aa 19-50, E()=3.90e-12; pfam:fer4 (PF00037) at aa 61-84, E()=6.00e-08; AAA (SM00382) at aa 115-317, E()=6.08e-07; 405-577, E()=2.25e-10; RNAse L inhibitor protein, putative 1678943 3862900 TA11220 Theileria annulata RNAse L inhibitor protein, putative XP_953484.1 1676792 R 5874 CDS TA11215 3862899 1679253..1680005 4 1 NC_011098.1 Tap579b07.q1c.C.cand.122 - score = 24.09; uncharacterized protein 1680005 3862899 TA11215 Theileria annulata uncharacterized protein XP_953485.1 1679253 D 5874 CDS TA11210 3862898 1680110..1680433 4 1 NC_011098.1 Tap579b07.q1c.C.cand.123 - score = 8.89; uncharacterized protein 1680433 3862898 TA11210 Theileria annulata uncharacterized protein XP_953486.1 1680110 D 5874 CDS TA11205 3862897 complement(1680475..1681182) 4 1 NC_011098.1 Tap579b07.q1c.cand.28 - score = 18.36; uncharacterized protein 1681182 3862897 TA11205 Theileria annulata uncharacterized protein XP_953487.1 1680475 R 5874 CDS TA11200 3862896 join(1681725..1681881,1681915..1682039,1682079..1682156,1682194..1682283,1682312..1682406,1682435..1682546) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.124 - score = 22.74; uncharacterized protein 1682546 3862896 TA11200 Theileria annulata uncharacterized protein XP_953488.1 1681725 D 5874 CDS TA11195 3862895 join(1682573..1682691,1682726..1682798) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.125 - score = 9.44; uncharacterized protein 1682798 3862895 TA11195 Theileria annulata uncharacterized protein XP_953489.1 1682573 D 5874 CDS TA11190 3862894 join(1683144..1683237,1683272..1683573,1683612..1683728,1683760..1684314,1684344..1684383,1684413..1684831,1684861..1685136) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.126 - score = 54.44; signal recognition particle (SRP), 68-kDa subunit, putative 1685136 3862894 TA11190 Theileria annulata signal recognition particle (SRP), 68-kDa subunit, putative XP_953490.1 1683144 D 5874 CDS TA11185 3862893 complement(1685197..1685799) 4 1 NC_011098.1 Tap579b07.q1c.cand.27 - score = 21.69; SMART pfam:NAC (PF01849) at aa 55-114, E()=2.30e-17; pfam:UBA (PF00627) at aa 160-200, E()=4.60e-04; nascent polypeptide associated complex (NAC), alpha chain, putative 1685799 3862893 TA11185 Theileria annulata nascent polypeptide associated complex (NAC), alpha chain, putative XP_953491.1 1685197 R 5874 CDS TA11180 3862892 complement(1686027..1686656) 4 1 NC_011098.1 Tap579b07.q1c.cand.26 - score = 15.73; uncharacterized protein 1686656 3862892 TA11180 Theileria annulata uncharacterized protein XP_953492.1 1686027 R 5874 CDS TA11175 3862891 join(1688067..1688290,1688322..1688403,1688515..1688919) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.127 - score = 32.19; SMART pfam:DUF558 (PF04452) at aa 109-219, E()=8.10e-14; uncharacterized protein 1688919 3862891 TA11175 Theileria annulata uncharacterized protein XP_953493.1 1688067 D 5874 CDS TA11170 3862890 complement(join(1689112..1689327,1689362..1692199,1692230..1692608,1692647..1693032)) 4 1 NC_011098.1 Tap579b07.q1c.cand.25 - score = 92.90; uncharacterized protein 1693032 3862890 TA11170 Theileria annulata uncharacterized protein XP_953494.1 1689112 R 5874 CDS TA11165 3862889 1693263..1693781 4 1 NC_011098.1 Tap579b07.q1c.C.cand.129 - score = 15.69; uncharacterized protein 1693781 3862889 TA11165 Theileria annulata uncharacterized protein XP_953495.1 1693263 D 5874 CDS TA11160 3862888 complement(1693824..1698230) 4 1 NC_011098.1 Tap579b07.q1c.cand.24 - score = 90.89; SMART pfam:B-tub_coD (PF05074) at aa 47-1052, E()=2.70e-30; pfam:HEAT_PBS (PF03130) at aa 419-452, E()=9.50e-02; beta-tubulin cofactor D, putative 1698230 3862888 TA11160 Theileria annulata beta-tubulin cofactor D, putative XP_953496.1 1693824 R 5874 CDS TA11155 3862887 complement(1700159..1702003) 4 1 NC_011098.1 Tap579b07.q1c.cand.23 - score = 147.26; uncharacterized protein 1702003 3862887 TA11155 Theileria annulata uncharacterized protein XP_953497.1 1700159 R 5874 CDS TA11150 3862886 complement(join(1702293..1702622,1702653..1702751,1702829..1703190,1703221..1703378,1703451..1703507,1703538..1703614,1703645..1703791,1703822..1704109,1704142..1704271,1704314..1704422,1704457..1704544,1704648..1704692)) 4 1 NC_011098.1 Tap579b07.q1c.cand.23 - score = 147.26; SMART pfam:B3_4 (PF03483) at aa 63-202, E()=1.20e-06; pfam:B5 (PF03484) at aa 314-384, E()=2.50e-16; phenylalanyl-tRNA synthetase, putative 1704692 3862886 TA11150 Theileria annulata phenylalanyl-tRNA synthetase, putative XP_953498.1 1702293 R 5874 CDS TA11145 3862885 complement(1704930..1706666) 4 1 NC_011098.1 Tap579b07.q1c.cand.23 - score = 147.26; uncharacterized protein 1706666 3862885 TA11145 Theileria annulata uncharacterized protein XP_953499.1 1704930 R 5874 CDS TA11140 3862884 complement(join(1708188..1708602,1708634..1708777,1708809..1708931,1708963..1709316,1709346..1709405,1709436..1709475,1709505..1709605,1709641..1709863,1709917..1710056,1710087..1710490)) 4 1 NC_011098.1 Tap579b07.q1c.cand.22 - score = 54.47; SMART 3 pfam:PPTA (PF01239) at aa 102-132, E()=4.30e-02; 145-174, E()=6.90e-02; 221-249, E()=7.20e-04; Rab geranylgeranyltransferase, putative 1710490 3862884 TA11140 Theileria annulata Rab geranylgeranyltransferase, putative XP_953500.1 1708188 R 5874 CDS TA11135 3862883 join(1710996..1711356,1711386..1711510,1711540..1711652,1711686..1711794,1711826..1716715) 4 1 NC_011098.1 SMART Sec7 (SM00222) at aa 542-945, E()=1.09e-06; vesicle trafficking protein (SEC7 homologue), putative 1716715 3862883 TA11135 Theileria annulata vesicle trafficking protein (SEC7 homologue), putative XP_953501.1 1710996 D 5874 CDS TA11130 3862882 join(1718516..1719184,1719255..1719437,1719469..1719597,1719681..1720016,1720060..1720334,1720367..1720475) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.132 - score = 39.49; SMART pfam:Peptidase_C48 (PF02902) at aa 298-517, E()=5.80e-23; ubiquitin-like protease (Ul), putative 1720475 3862882 TA11130 Theileria annulata ubiquitin-like protease (Ul), putative XP_953502.1 1718516 D 5874 CDS TA11125 3862881 complement(join(1720594..1720842,1720877..1721112,1721185..1722055)) 4 1 NC_011098.1 Tap579b07.q1c.cand.21 - score = 26.83; SMAR pfam:PMI_typeI (PF01238) at aa 4-395, E()=7.90e-23; mannose-6 phosphate isomerase, putative 1722055 3862881 TA11125 Theileria annulata mannose-6 phosphate isomerase, putative XP_953503.1 1720594 R 5874 CDS TA11120 3862880 join(1722298..1723654,1723702..1724585) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.133 - score = 59.19; SMART STYKc (SM00221) at aa 299-543, E()=1.37e-03; serine/threonine protein kinase, putative 1724585 3862880 TA11120 Theileria annulata serine/threonine protein kinase, putative XP_953504.1 1722298 D 5874 CDS TA11115 3862879 join(1724820..1724972,1725040..1725179,1725211..1725335,1725364..1725744,1725815..1725932,1725974..1726327,1726361..1726524,1726559..1726806) 4 1 NC_011098.1 SMART pfam:Gpi1 (PF05024) at aa 277-462, E()=3.40e-09; 7 probable transmembrane helices predicted for TA11115 by TMHMM2.0 at aa 199-221, 241-258, 278-300, 313-335, 401-423, 445-467 and 482-504; N-acetylglucosaminyl transferase, putative 1726806 3862879 TA11115 Theileria annulata N-acetylglucosaminyl transferase, putative XP_953505.1 1724820 D 5874 CDS TA11110 3862878 join(1727164..1727255,1727326..1727509,1727540..1727608,1727639..1727767,1727792..1728102,1728145..1728205,1728233..1728329,1728358..1728467) 4 1 NC_011098.1 SMART pfam:Amidohydro_1 (PF01979) at aa 3-361, E()=1.80e-06; dihydroorotase, putative 1728467 3862878 TA11110 Theileria annulata dihydroorotase, putative XP_953506.1 1727164 D 5874 CDS TA11105 3862877 complement(join(1728514..1730738,1730827..1732114)) 4 1 NC_011098.1 Tap579b07.q1c.cand.20 - score = 72.94; SMART pfam:GFLV_dehydrog_N (PF02812) at aa 327-719, E()=6.50e-12; pfam:GFLV_dehydrog (PF00208) at aa 736-1058, E()=4.20e-37; glutamate dehydrogenase, putative 1732114 3862877 TA11105 Theileria annulata glutamate dehydrogenase, putative XP_953507.1 1728514 R 5874 CDS TA11100 3862876 join(1733167..1736085,1736165..1736795,1736855..1737045,1737075..1737200,1737273..1737397,1737432..1737551,1737641..1737728) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.135 - score = 93.52; uncharacterized protein 1737728 3862876 TA11100 Theileria annulata uncharacterized protein XP_953508.1 1733167 D 5874 CDS TA11095 3862875 1738307..1739494 4 1 NC_011098.1 Tap579b07.q1c.C.cand.136 - score = 17.46; SMART 7 transmembrane domains at aa 67-89, 94-116, 152-169, 184-203, 210-232, 242-264 and 331-353; 7 probable transmembrane helices predicted for TA11095 by TMHMM2.0 at aa 67-89, 94-116, 152-169, 184-203, 210-232, 242-264 and 331-353; uncharacterized protein 1739494 3862875 TA11095 Theileria annulata uncharacterized protein XP_953509.1 1738307 D 5874 CDS TA11090 3862874 join(1739780..1742165,1742237..1742634) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.137 - score = 64.41; SMART DEXDc (SM00487) at aa 353-575, E()=2.40e-24; HELICc (SM00490) at aa 757-862, E()=2.83e-12; DEAD-box family helicase, putative 1742634 3862874 TA11090 Theileria annulata DEAD-box family helicase, putative XP_953510.1 1739780 D 5874 CDS TA11085 3862873 complement(join(1742715..1743054,1743086..1743865,1743896..1744714,1744773..1744844,1744873..1744964,1745033..1745181,1745251..1745342,1745378..1745601,1745631..1745677,1745708..1745981,1746065..1746146,1746217..1746425)) 4 1 NC_011098.1 SMART 2 S1 domains (SM00316) at aa 114-185, E()=3.44e-12; 204-285, E()=6.14e-09; pfam:Sas10_Utp3 (PF04000) at aa 540-944, E()=9.30e-02; uncharacterized protein 1746425 3862873 TA11085 Theileria annulata uncharacterized protein XP_953511.1 1742715 R 5874 CDS TA11080 3862872 complement(1746437..1747096) 4 1 NC_011098.1 uncharacterized protein 1747096 3862872 TA11080 Theileria annulata uncharacterized protein XP_953512.1 1746437 R 5874 CDS TA11075 3862871 complement(join(1747888..1748046,1748152..1748255,1748368..1748494)) 4 1 NC_011098.1 Tap579b07.q1c.cand.17 - score = 12.22; SMART pfam:Ribosomal_L7Ae (PF01248) at aa 21-115, E()=4.90e-31; high-mobility group protein, putative 1748494 3862871 TA11075 Theileria annulata high-mobility group protein, putative XP_953513.1 1747888 R 5874 CDS TA11070 3862870 join(1748964..1749095,1749132..1749279,1749325..1749429,1749511..1749752,1749864..1750469) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.138 - score = 36.14; SMART pfam:S-AdoMet_synt (PF00438) at aa 12-112, E()=5.20e-49; pfam:S-AdoMet_syntD2 (PF02772) at aa 124-247, E()=6.10e-69; pfam:S-AdoMet_syntD3 (PF02773) at aa 249-402, E()=2.70e-70; S-adenosylmethionne synthetase, putative 1750469 3862870 TA11070 Theileria annulata S-adenosylmethionne synthetase, putative XP_953514.1 1748964 D 5874 CDS TA11065 3862869 join(1750631..1751012,1751041..1751539,1751579..1751946,1752047..1752228,1752261..1752440) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.139 - score = 39.29; C terminal extensio clearly relies on P. yoelii; SMART pfam:Amidase (PF01425) at aa 65-519, E()=1.90e-37; 1 probable transmembrane helix predicted for TA11065 by TMHMM2.0 at aa 475-497; glutamyl-tRNA amidotransferase, subunit, putative 1752440 3862869 TA11065 Theileria annulata glutamyl-tRNA amidotransferase, subunit, putative XP_953515.1 1750631 D 5874 CDS TA11060 3862868 join(1752775..1753025,1753062..1753125,1753215..1753362,1753373..1753479) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.140 - score = 31.16; SMART RING (SM00184) at aa 23-61, E()=9.37e-10; 2 transmembrane domains at aa 114-133, 166-188; 2 probable transmembrane helices predicted for TA11060 by TMHMM2.0 at aa 114-133 and 166-188; uncharacterized protein 1753479 3862868 TA11060 Theileria annulata uncharacterized protein XP_953516.1 1752775 D 5874 CDS TA11055 3862867 join(1753633..1753683,1753715..1753768,1753838..1753993,1754023..1754114,1754145..1754211) 4 1 NC_011098.1 calcium-binding protein; SMART pfam:efhand (PF00036) at aa 76-104, E()=3.10e-03; uncharacterized protein 1754211 3862867 TA11055 Theileria annulata uncharacterized protein XP_953517.1 1753633 D 5874 CDS TA11050 3862866 complement(join(1754257..1755785,1755902..1756010)) 4 1 NC_011098.1 Tap579b07.q1c.cand.16 - score = 42.16; 1 probable transmembrane helix predicted for TA11050 by TMHMM2.0 at aa 9-31; Signal peptide predicted for TA11050 by SignalP 2.0 HMM (Signal peptide probability 0.676, signal anchor probability 0.317) with cleavage site probability 0.439 between residues 25 and 26; uncharacterized protein 1756010 3862866 TA11050 Theileria annulata uncharacterized protein XP_953518.1 1754257 R 5874 CDS TA11025 3862861 complement(1756488..1758857) 4 1 NC_011098.1 Tap579b07.q1c.cand.15 - score = 35.52; SMART pfam:Patatin (PF01734) at aa 221-395, E()=2.60e-02; phospholipase, putative 1758857 3862861 TA11025 Theileria annulata phospholipase, putative XP_953519.1 1756488 R 5874 CDS TA10970 3862850 complement(join(1759224..1759544,1759579..1759787,1759818..1760371,1760402..1761257,1761287..1761520,1761561..1761753)) 4 1 NC_011098.1 Tap579b07.q1c.cand.14 - score = 49.32; SMART AAA (SM00382) at aa 547-696, E()=1.64e-03; uncharacterized protein 1761753 3862850 TA10970 Theileria annulata uncharacterized protein XP_953520.1 1759224 R 5874 CDS TA10965 3862849 join(1762247..1762791,1762862..1763525) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.141 - score = 26.10; SMART SEC14 (SM00516) at aa 132-287, E()=3.80e-07; phosphoinositide binding protein (SEC14 homologue), putative 1763525 3862849 TA10965 Theileria annulata phosphoinositide binding protein (SEC14 homologue), putative XP_953521.1 1762247 D 5874 CDS TA10860 3862828 complement(1763581..1764615) 4 1 NC_011098.1 Tap579b07.q1c.cand.13 - score = 14.92; SMART 3 transmembrane domains at aa 218-240, 253-275 and 290-311; 3 probable transmembrane helices predicted for TA10860 by TMHMM2.0 at aa 218-240, 253-275 and 290-311; uncharacterized protein 1764615 3862828 TA10860 Theileria annulata uncharacterized protein XP_953522.1 1763581 R 5874 CDS TA10855 3862827 1764981..1768415 4 1 NC_011098.1 Tap579b07.q1c.C.cand.142 - score = 94.63; uncharacterized protein 1768415 3862827 TA10855 Theileria annulata uncharacterized protein XP_953523.1 1764981 D 5874 CDS TA10750 3862806 complement(join(1769079..1769581,1769639..1769831,1769863..1769988)) 4 1 NC_011098.1 Tap579b07.q1c.cand.12 - score = 11.97; SMART 2 transmembrane domains at aa 180-202 and 233-255; 2 probable transmembrane helices predicted for TA10750 by TMHMM2.0 at aa 180-202 and 233-255; uncharacterized protein 1769988 3862806 TA10750 Theileria annulata uncharacterized protein XP_953524.1 1769079 R 5874 CDS TA10745 3862805 1770456..1772711 4 1 NC_011098.1 Tap579b07.q1c.C.cand.143 - score = 59.27; SMART 4 WD (SM00320) domains at aa 280-319, E()=1.64e+02; 352-398, E()=3.27e-04; 486-525, E()=2.66e+00; 528-575, E()=2.47e+01; uncharacterized protein 1772711 3862805 TA10745 Theileria annulata uncharacterized protein XP_953525.1 1770456 D 5874 CDS TA10690 3862644 join(1772977..1773037,1773061..1773399,1773488..1773600) 4 1 NC_011098.1 SMART UBCc (SM00212) at aa 20-170, E()=1.24e-50; ubiquitin-conjugating enzyme E2, putative 1773600 3862644 TA10690 Theileria annulata ubiquitin-conjugating enzyme E2, putative XP_953526.1 1772977 D 5874 CDS TA10585 3862711 complement(1773731..1777150) 4 1 NC_011098.1 Tap579b07.q1c.cand.11 - score = 68.58; SMART 6 HAT (SM00386) domains at aa82-113, E()=1.46e+00; 119-155, E()=3.91e-01; 167-200, E()=5.59e+02; 225-259, E()=5.41e+02; 261-294, E()=1.88e+01; 295-327, E()=4.63e+02; pfam:rrm (PF00076) at aa 817-895, E()=1.60e-02; RRM (SM00360) at aa 1017-1088, E()=8.20e-11; uncharacterized protein 1777150 3862711 TA10585 Theileria annulata uncharacterized protein XP_953527.1 1773731 R 5874 CDS TA10530 3862690 complement(1777877..1780777) 4 1 NC_011098.1 Tap579b07.q1c.cand.10 - score = 37.31; SMART 10 transmembrane domains at aa 23-45, 66-88, 93-115, 120-142, 152-174, 187-204, 742-764, 785-807, 817-839 and 852-874; 10 probable transmembrane helices predicted for TA10530 by TMHMM2.0 at aa 23-45, 66-88, 93-115, 120-142, 152-174, 187-204, 742-764, 785-807, 817-839 and 852-874; uncharacterized protein 1780777 3862690 TA10530 Theileria annulata uncharacterized protein XP_953528.1 1777877 R 5874 CDS TA10475 3862679 complement(1781291..1783960) 4 1 NC_011098.1 Tap579b07.q1c.cand.9 - score = 28.81; SMART 10 transmembrane domains at aa 81-103, 118-140, 147-169, 175-197, 210-232, 674-696, 703-725, 740-762, 775-794 and 814-836; 10 probable transmembrane helices predicted for TA10475 by TMHMM2.0 at aa 81-103, 118-140, 147-169, 175-197, 210-232, 674-696, 703-725, 740-762, 775-794 and 814-836; uncharacterized protein 1783960 3862679 TA10475 Theileria annulata uncharacterized protein XP_953529.1 1781291 R 5874 CDS TA10420 3862561 complement(1784387..1786732) 4 1 NC_011098.1 Tap579b07.q1c.cand.8 - score = 21.64; SMART 11 transmembrane domains at aa 4-23 90-112, 141-160, 167-189, 204-226, 231-250, 265-287, 561-583, 596-618, 630-652, and 667-689; 11 probable transmembrane helices predicted for TA10420 by TMHMM2.0 at aa 4-23, 90-112, 141-160, 167-189, 204-226, 231-250, 265-287, 561-583, 596-618, 630-652 and 667-689; uncharacterized protein 1786732 3862561 TA10420 Theileria annulata uncharacterized protein XP_953530.1 1784387 R 5874 CDS TA10365 3862550 complement(join(1787209..1787388,1787427..1788041,1788125..1788422,1788487..1789004)) 4 1 NC_011098.1 Tap579b07.q1c.cand.7 - score = 36.78; SMART pfam:IBB (PF01749) at aa 2-110, E()=2.30e-04; 8 ARM (SM00185) domains at aa 119-160, E()=2.06e-04; 162-202, E()=2.80e-08; 204-245, E()=5.64e-04; 247-286, E()=1.34e+01; 288-328, E()=1.74e-04; 220-370, E()=4.02e-09; 372-412, E()=1.51e-04; 415-455, E()=3.52e+00; importin alpha, putative 1789004 3862550 TA10365 Theileria annulata importin alpha, putative XP_953531.1 1787209 R 5874 CDS TA10310 3862627 complement(join(1789359..1789589,1789684..1789881,1789914..1789974,1790042..1790070,1790203..1790235,1790458..1790598)) 4 1 NC_011098.1 SMART 2 transmembrane domains at aa 21-39 and 59-81; pfam:Nucleoplasmin (PF03066) at aa 87-230, E()=7.10e-03; 2 probable transmembrane helices predicted for TA10310 by TMHMM2.0 at aa 21-39 and 59-81; Signal anchor predicted for TA10310 by SignalP 2.0 HMM (Signal peptide probability 0.003, signal anchor probability 0.794) with cleavage site probability 0.001 between residues 34 and 35; uncharacterized protein 1790598 3862627 TA10310 Theileria annulata uncharacterized protein XP_953532.1 1789359 R 5874 CDS TA10305 3862626 join(1790954..1791032,1791101..1791411) 4 1 NC_011098.1 SMART pfam:Ribosomal_S17 (PF00366) at aa 39-118, E()=5.10e-04; ribosomal protein S17, putative 1791411 3862626 TA10305 Theileria annulata ribosomal protein S17, putative XP_953533.1 1790954 D 5874 CDS TA10200 3862536 complement(1791489..1792271) 4 1 NC_011098.1 Tap579b07.q1c.cand.5 - score = 25.10; uncharacterized protein 1792271 3862536 TA10200 Theileria annulata uncharacterized protein XP_953534.1 1791489 R 5874 CDS TA10195 3862535 join(1792500..1792642,1792675..1792782,1792816..1792897,1792998..1793141,1793172..1793246,1793281..1793346) 4 1 NC_011098.1 SMART pfam:RNA_pol_Rpb5_N (PF03871) at aa 1-90, E()=6.70e-12; pfam:RNA_pol_Rpb5_C (PF01191) at aa 132-205, E()=2.00e-41; DNA-directed RNA polymerase, subunit (RPB5 homologue), putative 1793346 3862535 TA10195 Theileria annulata DNA-directed RNA polymerase, subunit (RPB5 homologue), putative XP_953535.1 1792500 D 5874 CDS TA10090 3863337 complement(join(1793440..1794014,1794075..1794284,1794319..1794505)) 4 1 NC_011098.1 Tap579b07.q1c.cand.4 - score = 18.98; SMART 3 WD40 (SM00320) domains at aa 2-38, E()=9.55e+00; 242-279, E()=4.95e+00; 282-321, E()=3.05e-04; uncharacterized protein 1794505 3863337 TA10090 Theileria annulata uncharacterized protein XP_953536.1 1793440 R 5874 CDS TA10085 3863336 join(1795022..1795645,1795676..1795806,1795891..1796191) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.147 - score = 28.94; SMART pfam:Rieske (PF00355) at aa 238-343, E()=3.80e-09; 1 probable transmembrane helix predicted for TA10085 by TMHMM2.0 at aa 176-198; ubiquinol-cytochrome c reductase, putative 1796191 3863336 TA10085 Theileria annulata ubiquinol-cytochrome c reductase, putative XP_953537.1 1795022 D 5874 CDS TA10030 3863325 1796755..1801884 4 1 NC_011098.1 Tap579b07.q1c.C.cand.148 - score = 83.00; SMART 7 transmembrane domains at aa 144-166, 173-195, 205-227, 286-308, 323-345, 397-419 and 439-461; 2 AAA (SM00382) domains at aa 569-703, E()=4.40e-04; 1425-1682, E()=3.63e-01; pfam:ABC_membrane (PF00664) at aa 896-1186, E()=2.10e-02; 12 probable transmembrane helices predicted for TA10030 by TMHMM2.0 at aa 144-166, 173-195, 205-227, 286-308, 323-345, 397-419, 439-461, 882-904, 954-976, 1026-1048, 1053-1075 and 1132-1154; (subtelomeric) ABC-transporter protein family member, putative 1801884 3863325 TA10030 Theileria annulata (subtelomeric) ABC-transporter protein family member, putative XP_953538.1 1796755 D 5874 CDS TA09975 3863314 1802691..1804019 4 1 NC_011098.1 Tap579b07.q1c.C.cand.149 - score = 16.32; Signal peptide predicted for TA09975 by SignalP 2.0 HMM (Signal peptide probability 0.901, signal anchor probability 0.078) with cleavage site probability 0.605 between residues 22 and 23; uncharacterized protein 1804019 3863314 TA09975 Theileria annulata uncharacterized protein XP_953539.1 1802691 D 5874 CDS TA09920 3863108 1804732..1806714 4 1 NC_011098.1 Tap579b07.q1c.C.cand.150 - score = 36.14; SMART 2 pfam:DUF529 (PF04385) at aa 40-181, E()=1.60e-40; 476-617, E()=4.00e-22; SfiI-subtelomeric fragment related protein family member, putative 1806714 3863108 TA09920 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953540.1 1804732 D 5874 CDS TA09865 3863097 1807516..1809609 4 1 NC_011098.1 Tap579b07.q1c.C.cand.151 - score = 38.90; 1 probable transmembrane helix predicted for TA09865 by TMHMM2.0 at aa 5-24; Signal peptide predicted for TA09865 by SignalP 2.0 HMM (Signal peptide probability 0.700, signal anchor probability 0.292) with cleavage site probability 0.677 between residues 23 and 24; Theileria-specific sub-telomeric protein, SVSP family 1809609 3863097 TA09865 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family XP_953541.1 1807516 D 5874 CDS TA09810 3863300 1810696..1812141 4 1 NC_011098.1 Tap579b07.q1c.C.cand.152 - score = 14.18; 1 probable transmembrane helix predicted for TA09810 by TMHMM2.0 at aa 13-35; Signal anchor predicted for TA09810 by SignalP 2.0 HMM (Signal peptide probability 0.001, signal anchor probability 0.720) with cleavage site probability 0.000 between residues 40 and 41; Theileria-specific sub-telomeric protein, SVSP family member, putative 1812141 3863300 TA09810 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family member, putative XP_953542.1 1810696 D 5874 CDS TA09805 3863299 1812413..1814080 4 1 NC_011098.1 Tap579b07.q1c.C.cand.153 - score = 36.40; Signal peptide predicted for TA09805 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.063) with cleavage site probability 0.449 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family member, putative 1814080 3863299 TA09805 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family member, putative XP_953543.1 1812413 D 5874 CDS TA09800 3863298 1814334..1816532 4 1 NC_011098.1 Tap579b07.q1c.C.cand.154 - score = 42.52; Signal peptide predicted for TA09800 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.063) with cleavage site probability 0.449 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family member, putative 1816532 3863298 TA09800 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family member, putative XP_953544.1 1814334 D 5874 CDS TA09795 3863297 1816817..1818997 4 1 NC_011098.1 Tap579b07.q1c.C.cand.155 - score = 33.22; Signal peptide predicted for TA09795 by SignalP 2.0 HMM (Signal peptide probability 0.914, signal anchor probability 0.000) with cleavage site probability 0.885 between residues 18 and 19; Theileria-specific sub-telomeric protein, SVSP family member, putative 1818997 3863297 TA09795 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family member, putative XP_953545.1 1816817 D 5874 CDS TA09790 3863296 1819165..1821225 4 1 NC_011098.1 Tap579b07.q1c.C.cand.156 - score = 46.01; Signal peptide predicted for TA09790 by SignalP 2.0 HMM (Signal peptide probability 0.867, signal anchor probability 0.063) with cleavage site probability 0.449 between residues 21 and 22; Theileria-specific sub-telomeric protein, SVSP family member, putative 1821225 3863296 TA09790 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family member, putative XP_953546.1 1819165 D 5874 CDS TA09785 3863295 1821852..1823660 4 1 NC_011098.1 Tap579b07.q1c.C.cand.157 - score = 155.73; 1 probable transmembrane helix predicted for TA09785 by TMHMM2.0 at aa 5-22; Signal peptide predicted for TA09785 by SignalP 2.0 HMM (Signal peptide probability 0.961, signal anchor probability 0.039) with cleavage site probability 0.936 between residues 20 and 21; Theileria-specific sub-telomeric protein, SVSP family member, putative 1823660 3863295 TA09785 Theileria annulata Theileria-specific sub-telomeric protein, SVSP family member, putative XP_953547.1 1821852 D 5874 CDS TA09780 3863294 1824870..1830224 4 1 NC_011098.1 Tap579b07.q1c.C.cand.157 - score = 155.73; SMART 6 pfam:DUF529 (PF04385) domains at aa 378-528, E()=8.30e-08; 678-828, E()=1.50e-22; 976-1116, E()=6.00e-63; 1191-1332, E()=1.80e-50; 1376-1537, E()=1.60e-58; 1581-1722, E()=7.30e-70; SfiI-subtelomeric fragment related protein family member, putative 1830224 3863294 TA09780 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953548.1 1824870 D 5874 CDS TA09775 3863293 1831115..1833475 4 1 NC_011098.1 Tap579b07.q1c.C.cand.158 - score = 49.60; SMART pfam:DUF529 (PF04385) at aa 145-286, E()=4.30e-73; 329-478, E()=1.10e-59; 543-681, E()=2.50e-74; Signal peptide predicted for TA09775 by SignalP 2.0 HMM (Signal peptide probability 0.875, signal anchor probability 0.000) with cleavage site probability 0.791 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 1833475 3863293 TA09775 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953549.1 1831115 D 5874 CDS TA09770 3863292 join(1834424..1839194,1839236..1839549) 4 1 NC_011098.1 Tap579b07.q1c.C.cand.159 - score = 92.69; SMART pfam:EMA (PF02488) at aa 964-1220, E()=1.00e-02; pfam:DUF529 (PF04385) at aa 94-232, E()=2.70e-67; 415-552, E()=1.00e-57; 595-757, E()=8.20e-58; 805-942, E()=2.00e-57; 985-1095, E()=8.40e-09; 1111-1234, E()=6.00e-39; Signal peptide predicted for TA09770 by SignalP 2.0 HMM (Signal peptide probability 0.975, signal anchor probability 0.000) with cleavage site probability 0.696 between residues 25 and 26; SfiI-subtelomeric fragment related protein family member, putative 1839549 3863292 TA09770 Theileria annulata SfiI-subtelomeric fragment related protein family member, putative XP_953550.1 1834424 D 5874 CDS Tap370b08.q2ca38.01 3864552 <1..1519 NT_167255.1 2 NT_167255.1 SMART pfam:COX1 (PF00115) at aa 38-497, E()=5.90e-166; cytochrome C oxidase subunit I (COX1 homologue), putative 1519 3864552 Tap370b08.q2ca38.01 Theileria annulata cytochrome C oxidase subunit I (COX1 homologue), putative XP_039113697.1 1 D 5874 CDS Tap370b08.q2ca38.02c 3864553 complement(join(2326..3090,3122..3124)) NT_167255.1 1 NT_167255.1 SMART pfam:COX3 (PF00520) at aa 56-264, E()=6.00e-05; cytochrome C oxidase subunit III (COX3 homologue), putative 3124 3864553 Tap370b08.q2ca38.02c Theileria annulata cytochrome C oxidase subunit III (COX3 homologue), putative XP_039113698.1 2326 R 5874 CDS Tap370b08.q2ca38.03c 3864554 complement(4452..5543) NT_167255.1 1 NT_167255.1 SMART pfam:cytochrome_b_N (PF00033) at aa 1-190, E()=3.00e-44; pfam:cytochrome_b_C (PF00032) at aa 246-351, E()=5.50e-06; 1 transmembrane domain at aa 215-237; cytochrome B, putative 5543 3864554 Tap370b08.q2ca38.03c Theileria annulata cytochrome B, putative XP_039113699.1 4452 R 5874 CDS