; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_stop_codons.wc -o $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_stop_codon_frequencies.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_stop_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_stop_codon_frequencies.tab ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 131694 ; Sum of sequence lengths 395082 ; discarded residues 2 (other letters than ACGT) ; discarded occurrences 2 (contain discarded residues) ; nb possible positions 131692 ; total oligo occurrences 131692 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ aag aag 0.1867083801598 24588 cag cag 0.1512316617562 19916 gag gag 0.0879324484403 11580 atg atg 0.0396531300307 5222 ctg ctg 0.0268125626462 3531 ttg ttg 0.0258405977584 3403 aaa aaa 0.0251647784224 3314 agg agg 0.0240485374966 3167 caa caa 0.0236157093825 3110 tag tag 0.0221501685752 2917 acg acg 0.0193405825715 2547 gtg gtg 0.0167739877897 2209 tgg tgg 0.0160677945509 2116 aat aat 0.0132733954986 1748 gaa gaa 0.0129013151900 1699 tcg tcg 0.0115952373720 1527 ggg ggg 0.0113370591987 1493 ccg ccg 0.0107903289494 1421 gat gat 0.0102056313216 1344 aca aca 0.0101145096133 1332 aga aga 0.0101069161377 1331 cat cat 0.0097196488777 1280 cgg cgg 0.0093779424718 1235 gcg gcg 0.0087856513683 1157 aac aac 0.0087780578927 1156 ttt ttt 0.0080566777025 1061 att att 0.0079503690429 1047 act act 0.0077073778210 1015 tat tat 0.0075403213559 993 gct gct 0.0074871670261 986 cct cct 0.0073125170853 963 cca cca 0.0072441758041 954 cac cac 0.0070923062904 934 ctt ctt 0.0070391519606 927 tca tca 0.0066822586034 880 gac gac 0.0066139173222 871 tct tct 0.0065835434195 867 tgt tgt 0.0065152021383 858 agt agt 0.0063481456732 836 ata ata 0.0061203414027 806 gca gca 0.0057710415211 760 tta tta 0.0056267654831 741 atc atc 0.0051180026122 674 tac tac 0.0051104091365 673 gtt gtt 0.0049585396228 653 agc agc 0.0048977918173 645 taa taa 0.0048901983416 644 gta gta 0.0048522309632 639 tgc tgc 0.0047231418765 622 cta cta 0.0046927679738 618 cga cga 0.0046168332169 608 gga gga 0.0046092397412 607 ggt ggt 0.0043814354706 577 ttc ttc 0.0043586550436 574 ctc ctc 0.0037359900374 492 acc acc 0.0037056161346 488 tcc tcc 0.0035005922911 461 ccc ccc 0.0034170640586 450 gtc gtc 0.0034094705829 449 tga tga 0.0033866901558 446 ggc ggc 0.0032120402150 423 gcc gcc 0.0028931142362 381 cgt cgt 0.0028171794794 371 cgc cgc 0.0026956838684 355 ; Host name n40 ; Job started 2017-04-15.085851 ; Job done 2017-04-15.085854 ; Seconds 2.57 ; user 2.57 ; system 0.09 ; cuser 0 ; csystem 0