; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_start_codons.wc -o $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_start_codon_frequencies.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_start_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Nematostella_vectensis.ASM20922v1.34/genome/Nematostella_vectensis.ASM20922v1.34_start_codon_frequencies.tab ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 131694 ; Sum of sequence lengths 395082 ; discarded residues 6 (other letters than ACGT) ; discarded occurrences 4 (contain discarded residues) ; nb possible positions 131690 ; total oligo occurrences 131690 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ atg atg 0.1441567317184 18984 gtt gtt 0.0470347027109 6194 gtg gtg 0.0425772647885 5607 gaa gaa 0.0334953299415 4411 gta gta 0.0310046320905 4083 gtc gtc 0.0293492292505 3865 gat gat 0.0261902953907 3449 att att 0.0255676209279 3367 aaa aaa 0.0228111473916 3004 gga gga 0.0222416280659 2929 ggt ggt 0.0218163869694 2873 ata ata 0.0217784190144 2868 gct gct 0.0217176702863 2860 gag gag 0.0216645151492 2853 atc atc 0.0206849419090 2724 gca gca 0.0206545675450 2720 gac gac 0.0178905004176 2356 ggc ggc 0.0159389475283 2099 aat aat 0.0156883590250 2066 ctg ctg 0.0156427974789 2060 ctt ctt 0.0153770217936 2025 gcc gcc 0.0140025818209 1844 ttt ttt 0.0139342395019 1835 aca aca 0.0138886779558 1829 gcg gcg 0.0123395853899 1625 ttg ttg 0.0122712430708 1616 caa caa 0.0121725263877 1603 act act 0.0121117776597 1595 aga aga 0.0118308147923 1558 ggg ggg 0.0116789429721 1538 tgt tgt 0.0116485686081 1534 agt agt 0.0107145569140 1411 aac aac 0.0105399043208 1388 ttc ttc 0.0104487812286 1376 ctc ctc 0.0103045029995 1357 acc acc 0.0096818285367 1275 cat cat 0.0096058926266 1265 cca cca 0.0095223631255 1254 agc agc 0.0092414002582 1217 tgg tgg 0.0091123092110 1200 cct cct 0.0088161591617 1161 tgc tgc 0.0087630040246 1154 tat tat 0.0086111322044 1134 agg agg 0.0084972283393 1119 cta cta 0.0084668539752 1115 tga tga 0.0084440732022 1112 tta tta 0.0083225757461 1096 tct tct 0.0076315589642 1005 acg acg 0.0074644999620 983 tca tca 0.0072594730048 956 cac cac 0.0072063178677 949 tac tac 0.0071227883666 938 aag aag 0.0069025742274 909 tcc tcc 0.0068342319083 900 ccc ccc 0.0066899536791 881 cgt cgt 0.0048295238818 636 cag cag 0.0045105930595 594 taa taa 0.0043966891943 579 ccg ccg 0.0043587212393 574 cga cga 0.0043207532842 569 cgc cgc 0.0039562609158 521 tcg tcg 0.0038499506417 507 cgg cgg 0.0034550839092 455 tag tag 0.0009567924672 126 ; Host name n52 ; Job started 2017-04-15.085718 ; Job done 2017-04-15.085720 ; Seconds 1.42 ; user 1.42 ; system 0.04 ; cuser 0 ; csystem 0