; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Daphnia_pulex.V1.0.34/genome/Daphnia_pulex.V1.0.34_start_codons.wc -o $RSAT/public_html/data/genomes/Daphnia_pulex.V1.0.34/genome/Daphnia_pulex.V1.0.34_start_codon_frequencies.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Daphnia_pulex.V1.0.34/genome/Daphnia_pulex.V1.0.34_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Daphnia_pulex.V1.0.34/genome/Daphnia_pulex.V1.0.34_start_codon_frequencies.tab
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	142367
; Sum of sequence lengths      	427101
; discarded residues           	2	 (other letters than ACGT)
; discarded occurrences        	2	 (contain discarded residues)
; nb possible positions        	142365
; total oligo occurrences      	142365
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.2264742036315	32242
gtt	gtt	0.0450602325010	6415
gtg	gtg	0.0385628490149	5490
gaa	gaa	0.0357812664630	5094
att	att	0.0331893372669	4725
gat	gat	0.0271555508728	3866
gta	gta	0.0261862114986	3728
aaa	aaa	0.0236083306993	3361
gtc	gtc	0.0228286446809	3250
aat	aat	0.0190706985565	2715
gga	gga	0.0188880693991	2689
gct	gct	0.0183963755136	2619
atc	atc	0.0181645769677	2586
ata	ata	0.0175253749166	2495
ttt	ttt	0.0173638183542	2472
gag	gag	0.0173567941559	2471
ttg	ttg	0.0173567941559	2471
gca	gca	0.0167737856917	2388
gac	gac	0.0155515751765	2214
ggt	ggt	0.0144768728269	2061
gcc	gcc	0.0125943876655	1793
gcg	gcg	0.0113862255470	1621
aac	aac	0.0113862255470	1621
ctg	ctg	0.0112597899765	1603
act	act	0.0108734590665	1548
aga	aga	0.0106276121238	1513
tta	tta	0.0105222491483	1498
ggc	ggc	0.0103958135778	1480
ctt	ctt	0.0101710392301	1448
agt	agt	0.0100235310645	1427
acg	acg	0.0098900712956	1408
caa	caa	0.0097917325185	1394
aca	aca	0.0097776841218	1392
ttc	ttc	0.0097214905349	1384
acc	acc	0.0086889333755	1237
aag	aag	0.0083236750606	1185
tgg	tgg	0.0082534330770	1175
agc	agc	0.0082183120851	1170
tgt	tgt	0.0082112878868	1169
ggg	ggg	0.0077476907948	1103
cca	cca	0.0076072068275	1083
tat	tat	0.0076072068275	1083
ctc	ctc	0.0075299406455	1072
tca	tca	0.0074245776701	1057
cat	cat	0.0072840937028	1037
agg	agg	0.0072349243143	1030
cta	cta	0.0068766901977	979
tgc	tgc	0.0068415692059	974
tga	tga	0.0067783514206	965
tct	tct	0.0064482140976	918
tcg	tcg	0.0063568995188	905
ccg	ccg	0.0059143750220	842
tac	tac	0.0058511572367	833
cct	cct	0.0052400519791	746
cga	cga	0.0050995680118	726
cac	cac	0.0044463175640	633
ccc	ccc	0.0041723738278	594
tcc	tcc	0.0041232044393	587
taa	taa	0.0040248656622	573
cgt	cgt	0.0038000913146	541
cgg	cgg	0.0035401959751	504
cgc	cgc	0.0035331717768	503
cag	cag	0.0031538650651	449
tag	tag	0.0014750816563	210
; Host name	n81
; Job started	2017-04-15.085143
; Job done	2017-04-15.085150
; Seconds	7.2
;	user	7.2
;	system	0.11
;	cuser	0
;	csystem	0