; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Culex_quinquefasciatus.CpipJ2.34/genome/Culex_quinquefasciatus.CpipJ2.34_start_codons.wc -o $RSAT/public_html/data/genomes/Culex_quinquefasciatus.CpipJ2.34/genome/Culex_quinquefasciatus.CpipJ2.34_start_codon_frequencies.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Culex_quinquefasciatus.CpipJ2.34/genome/Culex_quinquefasciatus.CpipJ2.34_start_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Culex_quinquefasciatus.CpipJ2.34/genome/Culex_quinquefasciatus.CpipJ2.34_start_codon_frequencies.tab ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 71281 ; Sum of sequence lengths 213843 ; discarded residues (other letters than ACGT) ; discarded occurrences (contain discarded residues) ; nb possible positions 71281 ; total oligo occurrences 71281 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ atg atg 0.2833153294707 20195 att att 0.0268655041315 1915 atc atc 0.0264446346151 1885 gtc gtc 0.0257993013566 1839 gaa gaa 0.0250277072432 1784 aaa aaa 0.0236528668229 1686 gtt gtt 0.0227970988061 1625 gtg gtg 0.0212819685470 1517 aac aac 0.0208470700467 1486 caa caa 0.0181675341255 1295 gac gac 0.0166804618341 1189 ctc ctc 0.0156423170270 1115 aat aat 0.0151933895428 1083 ctg ctg 0.0141833027034 1011 gcc gcc 0.0141271867679 1007 ata ata 0.0139027230258 991 ctt ctt 0.0132714187511 946 aca aca 0.0130609839929 931 gat gat 0.0130048680574 927 gta gta 0.0129908390735 926 acc acc 0.0129347231380 922 ttc ttc 0.0125559405732 895 acg acg 0.0115739117016 825 gca gca 0.0112793030401 804 agc agc 0.0111249842174 793 gga gga 0.0108864914914 776 cac cac 0.0108724625075 775 tgc tgc 0.0107742596204 768 gag gag 0.0105778538460 754 ggc ggc 0.0104375640072 744 ggt ggt 0.0103954770556 741 ttt ttt 0.0102972741684 734 act act 0.0102551872168 731 cat cat 0.0097501437971 695 cca cca 0.0094134481839 671 ccc ccc 0.0091749554580 654 tgg tgg 0.0090627235869 646 ttg ttg 0.0089504917159 638 cga cga 0.0088803467965 633 gct gct 0.0087400569577 623 ccg ccg 0.0086278250866 615 cta cta 0.0084875352478 605 tcc tcc 0.0083893323607 598 tga tga 0.0083191874413 593 aag aag 0.0082350135380 587 cgc cgc 0.0080806947153 576 agt agt 0.0080245787798 572 gcg gcg 0.0078842889410 562 aga aga 0.0077580280860 553 tac tac 0.0076738541827 547 tgt tgt 0.0075055063762 535 tca tca 0.0066637673433 475 tcg tcg 0.0066076514078 471 cgg cgg 0.0065234775045 465 cgt cgt 0.0062428978269 445 agg agg 0.0062148398591 443 cct cct 0.0061026079881 435 cag cag 0.0060885790042 434 tta tta 0.0051205791165 365 tct tct 0.0043630139869 311 taa taa 0.0040263183738 287 tat tat 0.0038439415833 274 ggg ggg 0.0038158836155 272 tag tag 0.0012064926137 86 ; Host name n49 ; Job started 2017-04-15.085221 ; Job done 2017-04-15.085222 ; Seconds 0.82 ; user 0.82 ; system 0.04 ; cuser 0 ; csystem 0