-- dump date	2015-05-26.160227
-- class	EnsEMBL::gene
-- table	gene
-- table	main
-- field 1	id
-- field 2	status
-- field 3	type
-- field 4	name
-- field 5	contig
-- field 6	start_pos
-- field 7	end_pos
-- field 8	strand
-- field 9	description
-- header
-- id	status	type	name	contig	start_pos	end_pos	strand	description
ENSCJAG00000002964	KNOWN	protein_coding	SOCS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	83546557	83553632	D	Suppressor of cytokine signaling 2 {ECO:0000313|EMBL:JAB08148.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005372}  [Source:UniProtKB/TrEMBL;Acc:F7ICH5]
ENSCJAG00000014941	KNOWN	protein_coding	HSD11B1	chromosome:C_jacchus3.2.1:19:1:49578535:1	31771884	31827198	D	Corticosteroid 11-beta-dehydrogenase isozyme 1 {ECO:0000313|EMBL:JAB05399.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027534}  [Source:UniProtKB/TrEMBL;Acc:F7E8M5]
ENSCJAG00000023135	KNOWN_BY_PROJECTION	protein_coding	G0S2	chromosome:C_jacchus3.2.1:19:1:49578535:1	31761838	31762954	D	G0/G1 switch 2 [Source:HGNC Symbol;Acc:HGNC:30229]
ENSCJAG00000000926	KNOWN	protein_coding	MYO5C	chromosome:C_jacchus3.2.1:10:1:132174527:1	29383706	29492151	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001611}; Unconventional myosin-Vc {ECO:0000313|EMBL:JAB10918.1}  [Source:UniProtKB/TrEMBL;Acc:F6USL1]
ENSCJAG00000019962	KNOWN	protein_coding	C11ORF49	chromosome:C_jacchus3.2.1:11:1:130397257:1	110205668	110434154	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037128}  [Source:UniProtKB/TrEMBL;Acc:F7CFW4]
ENSCJAG00000014314	KNOWN_BY_PROJECTION	protein_coding	GC	chromosome:C_jacchus3.2.1:3:1:190850796:1	122884830	122925404	D	group-specific component (vitamin D binding protein) [Source:HGNC Symbol;Acc:HGNC:4187]
ENSCJAG00000015063	KNOWN_BY_PROJECTION	protein_coding	FXR2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74222787	74255250	D	fragile X mental retardation, autosomal homolog 2 [Source:HGNC Symbol;Acc:HGNC:4024]
ENSCJAG00000019944	KNOWN_BY_PROJECTION	protein_coding	LRP4	chromosome:C_jacchus3.2.1:11:1:130397257:1	110149810	110184843	R	low density lipoprotein receptor-related protein 4 [Source:HGNC Symbol;Acc:HGNC:6696]
ENSCJAG00000005637	KNOWN_BY_PROJECTION	protein_coding	MDGA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	38668280	38728070	R	MAM domain containing glycosylphosphatidylinositol anchor 1 [Source:HGNC Symbol;Acc:HGNC:19267]
ENSCJAG00000015544	KNOWN	protein_coding	ITPR1	chromosome:C_jacchus3.2.1:15:1:98464013:1	56339596	56702190	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028701}  [Source:UniProtKB/TrEMBL;Acc:F7BMC7]
ENSCJAG00000015055	KNOWN_BY_PROJECTION	protein_coding	SAT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74210117	74211504	D	spermidine/spermine N1-acetyltransferase family member 2 [Source:HGNC Symbol;Acc:HGNC:23160]
ENSCJAG00000019940	NOVEL	protein_coding	ENSCJAG00000019940	chromosome:C_jacchus3.2.1:11:1:130397257:1	110053090	110054861	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037082}  [Source:UniProtKB/TrEMBL;Acc:F6X9M1]
ENSCJAG00000005622	KNOWN	protein_coding	CCDC167	chromosome:C_jacchus3.2.1:4:1:171630274:1	38493132	38516983	R	Coiled-coil domain-containing protein 167 {ECO:0000313|EMBL:JAB16371.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010285}  [Source:UniProtKB/TrEMBL;Acc:F7C8Y8]
ENSCJAG00000000947	KNOWN_BY_PROJECTION	protein_coding	GNB5	chromosome:C_jacchus3.2.1:10:1:132174527:1	29306951	29373745	R	guanine nucleotide binding protein (G protein), beta 5 [Source:HGNC Symbol;Acc:HGNC:4401]
ENSCJAG00000014295	KNOWN_BY_PROJECTION	protein_coding	NPFFR2	chromosome:C_jacchus3.2.1:3:1:190850796:1	122545532	122638815	R	neuropeptide FF receptor 2 [Source:HGNC Symbol;Acc:HGNC:4525]
ENSCJAG00000014293	NOVEL	pseudogene	ENSCJAG00000014293	chromosome:C_jacchus3.2.1:3:1:190850796:1	122512489	122513282	D	<no descrition>
ENSCJAG00000000960	NOVEL	protein_coding	ENSCJAG00000000960	chromosome:C_jacchus3.2.1:10:1:132174527:1	29295978	29298797	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001639}  [Source:UniProtKB/TrEMBL;Acc:F7CT87]
ENSCJAG00000032825	KNOWN_BY_PROJECTION	protein_coding	MRPL42	chromosome:C_jacchus3.2.1:9:1:124281992:1	83438007	83487040	D	mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:HGNC:14493]
ENSCJAG00000017223	KNOWN_BY_PROJECTION	protein_coding	PTPN3	chromosome:C_jacchus3.2.1:1:1:210400635:1	152831669	152917551	R	protein tyrosine phosphatase, non-receptor type 3 [Source:HGNC Symbol;Acc:HGNC:9655]
ENSCJAG00000002979	KNOWN	protein_coding	UBE2N	chromosome:C_jacchus3.2.1:9:1:124281992:1	83376647	83409220	R	Ubiquitin-conjugating enzyme E2 N {ECO:0000313|EMBL:JAB11856.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005398}  [Source:UniProtKB/TrEMBL;Acc:F7IA43]
ENSCJAG00000014913	KNOWN_BY_PROJECTION	protein_coding	LAMB3	chromosome:C_jacchus3.2.1:19:1:49578535:1	31682835	31730365	R	laminin, beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]
ENSCJAG00000008230	KNOWN	protein_coding	TNKS2	chromosome:C_jacchus3.2.1:12:1:121768101:1	78660817	78728702	D	Tankyrase-2 {ECO:0000313|EMBL:JAB07854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015379}  [Source:UniProtKB/TrEMBL;Acc:F7CVA7]
ENSCJAG00000009891	KNOWN	protein_coding	CCDC88A	chromosome:C_jacchus3.2.1:14:1:108792865:1	51976068	52104373	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043023}  [Source:UniProtKB/TrEMBL;Acc:F7HYR6]
ENSCJAG00000017219	NOVEL	pseudogene	ENSCJAG00000017219	chromosome:C_jacchus3.2.1:1:1:210400635:1	152694756	152695058	R	<no descrition>
ENSCJAG00000017184	KNOWN_BY_PROJECTION	protein_coding	EPB41L4B	chromosome:C_jacchus3.2.1:1:1:210400635:1	152609263	152725227	R	erythrocyte membrane protein band 4.1 like 4B [Source:HGNC Symbol;Acc:HGNC:19818]
ENSCJAG00000017183	KNOWN_BY_PROJECTION	protein_coding	FRRS1L	chromosome:C_jacchus3.2.1:1:1:210400635:1	152571989	152584942	R	ferric-chelate reductase 1-like [Source:HGNC Symbol;Acc:HGNC:1362]
ENSCJAG00000010929	KNOWN	protein_coding	PPP1R3C	chromosome:C_jacchus3.2.1:12:1:121768101:1	78504358	78509054	R	Protein phosphatase 1 regulatory subunit 3 {ECO:0000256|PIRNR:PIRNR038207}  [Source:UniProtKB/TrEMBL;Acc:F7GL21]
ENSCJAG00000017154	KNOWN_BY_PROJECTION	protein_coding	TMEM245	chromosome:C_jacchus3.2.1:1:1:210400635:1	152451824	152557852	R	transmembrane protein 245 [Source:HGNC Symbol;Acc:HGNC:1363]
ENSCJAG00000014220	KNOWN_BY_PROJECTION	protein_coding	ADAMTS3	chromosome:C_jacchus3.2.1:3:1:190850796:1	122122883	122563144	D	ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:HGNC Symbol;Acc:HGNC:219]
ENSCJAG00000015516	KNOWN_BY_PROJECTION	protein_coding	SUMF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	56209272	56314583	R	sulfatase modifying factor 1 [Source:HGNC Symbol;Acc:HGNC:20376]
ENSCJAG00000015035	KNOWN_BY_PROJECTION	protein_coding	SHBG	chromosome:C_jacchus3.2.1:5:1:159171411:1	74204859	74209963	R	sex hormone-binding globulin [Source:HGNC Symbol;Acc:HGNC:10839]
ENSCJAG00000002992	KNOWN	protein_coding	NUDT4	chromosome:C_jacchus3.2.1:9:1:124281992:1	83344133	83367585	D	Diphosphoinositol polyphosphate phosphohydrolase 2 isoform alpha {ECO:0000313|EMBL:JAB09887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005424}  [Source:UniProtKB/TrEMBL;Acc:F7I2Z8]
ENSCJAG00000015508	NOVEL	protein_coding	ENSCJAG00000015508	chromosome:C_jacchus3.2.1:15:1:98464013:1	56150346	56164385	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028548}  [Source:UniProtKB/TrEMBL;Acc:F7ALX9]
ENSCJAG00000015500	KNOWN	protein_coding	LRRN1	chromosome:C_jacchus3.2.1:15:1:98464013:1	55689943	55729572	D	Leucine-rich repeat neuronal protein 1 {ECO:0000313|EMBL:JAB13836.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028540}  [Source:UniProtKB/TrEMBL;Acc:F7AM38]
ENSCJAG00000015494	NOVEL	protein_coding	ENSCJAG00000015494	chromosome:C_jacchus3.2.1:15:1:98464013:1	55564630	55565079	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028532}  [Source:UniProtKB/TrEMBL;Acc:F7B5C8]
ENSCJAG00000032946	KNOWN_BY_PROJECTION	protein_coding	DRAM1	chromosome:C_jacchus3.2.1:9:1:124281992:1	82934551	82943601	R	DNA-damage regulated autophagy modulator 1 [Source:HGNC Symbol;Acc:HGNC:25645]
ENSCJAG00000015479	KNOWN	protein_coding	CRBN	chromosome:C_jacchus3.2.1:15:1:98464013:1	54993803	55022550	R	Protein cereblon isoform 1 {ECO:0000313|EMBL:JAB15209.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028518}  [Source:UniProtKB/TrEMBL;Acc:F7BPB1]
ENSCJAG00000014202	KNOWN	protein_coding	COX18	chromosome:C_jacchus3.2.1:3:1:190850796:1	121636389	121650329	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026118}  [Source:UniProtKB/TrEMBL;Acc:F7IGL7]
ENSCJAG00000015466	KNOWN	protein_coding	TRNT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	54973923	54993724	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028497}  [Source:UniProtKB/TrEMBL;Acc:F6UGE7]
ENSCJAG00000011474	NOVEL	pseudogene	ENSCJAG00000011474	chromosome:C_jacchus3.2.1:9:1:124281992:1	82862599	82862948	R	<no descrition>
ENSCJAG00000015019	KNOWN_BY_PROJECTION	protein_coding	ATP1B2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74180023	74186407	R	ATPase, Na+/K+ transporting, beta 2 polypeptide [Source:HGNC Symbol;Acc:HGNC:805]
ENSCJAG00000014477	KNOWN	protein_coding	GRSF1	chromosome:C_jacchus3.2.1:3:1:190850796:1	123856805	123874731	D	G-rich sequence factor 1 isoform 1 {ECO:0000313|EMBL:JAB03394.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026712}  [Source:UniProtKB/TrEMBL;Acc:F7IN93]
ENSCJAG00000016101	KNOWN_BY_PROJECTION	protein_coding	OGG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	61661228	61680056	D	8-oxoguanine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:8125]
ENSCJAG00000020045	KNOWN	protein_coding	MADD	chromosome:C_jacchus3.2.1:11:1:130397257:1	110546428	110607092	D	MAP kinase-activating death domain protein isoform g {ECO:0000313|EMBL:JAB37572.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050642}  [Source:UniProtKB/TrEMBL;Acc:F7GT09]
ENSCJAG00000005392	NOVEL	pseudogene	ENSCJAG00000005392	chromosome:C_jacchus3.2.1:5:1:159171411:1	74322739	74323940	D	<no descrition>
ENSCJAG00000014456	KNOWN	protein_coding	MOB1B	chromosome:C_jacchus3.2.1:3:1:190850796:1	123709397	123783466	R	MOB kinase activator 1B isoform 2 {ECO:0000313|EMBL:JAB04503.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026607}  [Source:UniProtKB/TrEMBL;Acc:F7I276]
ENSCJAG00000011813	NOVEL	protein_coding	CIAS1	chromosome:C_jacchus3.2.1:19:1:49578535:1	32788685	32817070	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045928}  [Source:UniProtKB/TrEMBL;Acc:F6TC18]
ENSCJAG00000011487	KNOWN	protein_coding	NTS	chromosome:C_jacchus3.2.1:9:1:124281992:1	82544914	82552403	R	Neurotensin/neuromedin N preproprotein {ECO:0000313|EMBL:JAB14896.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021127}  [Source:UniProtKB/TrEMBL;Acc:F6T798]
ENSCJAG00000019878	KNOWN	protein_coding	CKAP5	chromosome:C_jacchus3.2.1:11:1:130397257:1	110016780	110129197	R	Cytoskeleton-associated protein 5 isoform a {ECO:0000313|EMBL:JAB03867.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037072}  [Source:UniProtKB/TrEMBL;Acc:F6XAE0]
ENSCJAG00000019762	KNOWN	protein_coding	MGAT4C	chromosome:C_jacchus3.2.1:9:1:124281992:1	82423635	82640319	D	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C {ECO:0000313|EMBL:JAB16789.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042024}  [Source:UniProtKB/TrEMBL;Acc:F6RTS9]
ENSCJAG00000009868	KNOWN_BY_PROJECTION	protein_coding	CFAP36	chromosome:C_jacchus3.2.1:14:1:108792865:1	51826294	51852595	R	cilia and flagella associated protein 36 [Source:HGNC Symbol;Acc:HGNC:30540]
ENSCJAG00000014868	KNOWN	protein_coding	CAMK1G	chromosome:C_jacchus3.2.1:19:1:49578535:1	31649491	31681910	D	Calcium/calmodulin-dependent protein kinase type 1G {ECO:0000313|EMBL:JAB18274.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027459}  [Source:UniProtKB/TrEMBL;Acc:F7G5K6]
ENSCJAG00000019761	NOVEL	pseudogene	ENSCJAG00000019761	chromosome:C_jacchus3.2.1:9:1:124281992:1	81470964	81471612	D	<no descrition>
ENSCJAG00000035451	NOVEL	protein_coding	ENSCJAG00000035451	chromosome:C_jacchus3.2.1:9:1:124281992:1	81285389	81286925	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044777}  [Source:UniProtKB/TrEMBL;Acc:F7FHT2]
ENSCJAG00000034499	NOVEL	protein_coding	ENSCJAG00000034499	chromosome:C_jacchus3.2.1:9:1:124281992:1	80372856	80373448	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046995}  [Source:UniProtKB/TrEMBL;Acc:F7I127]
ENSCJAG00000014863	NOVEL	pseudogene	ENSCJAG00000014863	chromosome:C_jacchus3.2.1:19:1:49578535:1	31440320	31440741	D	<no descrition>
ENSCJAG00000003768	NOVEL	pseudogene	ENSCJAG00000003768	chromosome:C_jacchus3.2.1:19:1:49578535:1	31212238	31212921	D	<no descrition>
ENSCJAG00000015437	KNOWN_BY_PROJECTION	protein_coding	IL5RA	chromosome:C_jacchus3.2.1:15:1:98464013:1	54911736	54950716	R	interleukin 5 receptor, alpha [Source:HGNC Symbol;Acc:HGNC:6017]
ENSCJAG00000005567	KNOWN_BY_PROJECTION	protein_coding	CMTR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	38441569	38491583	D	cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]
ENSCJAG00000010937	KNOWN	protein_coding	HECTD2	chromosome:C_jacchus3.2.1:12:1:121768101:1	78239949	78344875	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020295}  [Source:UniProtKB/TrEMBL;Acc:F7DKG7]
ENSCJAG00000014978	KNOWN	protein_coding	TP53	chromosome:C_jacchus3.2.1:5:1:159171411:1	74153875	74174323	D	Cellular tumor antigen p53 {ECO:0000256|RuleBase:RU003304}  [Source:UniProtKB/TrEMBL;Acc:F7GNX0]
ENSCJAG00000019864	KNOWN_BY_PROJECTION	protein_coding	F2	chromosome:C_jacchus3.2.1:11:1:130397257:1	109989722	110012798	D	coagulation factor II (thrombin) [Source:HGNC Symbol;Acc:HGNC:3535]
ENSCJAG00000011001	KNOWN_BY_PROJECTION	protein_coding	PCGF5	chromosome:C_jacchus3.2.1:12:1:121768101:1	78007107	78135148	D	polycomb group ring finger 5 [Source:HGNC Symbol;Acc:HGNC:28264]
ENSCJAG00000000962	KNOWN	protein_coding	MAPK6	chromosome:C_jacchus3.2.1:10:1:132174527:1	29187157	29251370	D	Mitogen-activated protein kinase 6 {ECO:0000313|EMBL:JAB04422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044559}  [Source:UniProtKB/TrEMBL;Acc:F7FWM0]
ENSCJAG00000019757	KNOWN_BY_PROJECTION	protein_coding	C12orf50	chromosome:C_jacchus3.2.1:9:1:124281992:1	80293099	80338356	D	chromosome 12 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:26665]
ENSCJAG00000019859	KNOWN_BY_PROJECTION	protein_coding	ZNF408	chromosome:C_jacchus3.2.1:11:1:130397257:1	109968972	109974712	D	zinc finger protein 408 [Source:HGNC Symbol;Acc:HGNC:20041]
ENSCJAG00000019751	KNOWN_BY_PROJECTION	protein_coding	C12orf29	chromosome:C_jacchus3.2.1:9:1:124281992:1	80273371	80288805	R	chromosome 12 open reading frame 29 [Source:HGNC Symbol;Acc:HGNC:25322]
ENSCJAG00000011021	KNOWN_BY_PROJECTION	protein_coding	ANKRD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	77704392	77713842	R	ankyrin repeat domain 1 (cardiac muscle) [Source:HGNC Symbol;Acc:HGNC:15819]
ENSCJAG00000015394	KNOWN	protein_coding	CNTN4	chromosome:C_jacchus3.2.1:15:1:98464013:1	54308935	54898109	D	Contactin-4 isoform a {ECO:0000313|EMBL:JAB31148.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028427}  [Source:UniProtKB/TrEMBL;Acc:F6WTM5]
ENSCJAG00000009837	KNOWN_BY_PROJECTION	protein_coding	SMEK2	chromosome:C_jacchus3.2.1:14:1:108792865:1	51750097	51823560	D	SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:HGNC:29267]
ENSCJAG00000011045	KNOWN	protein_coding	RPP30	chromosome:C_jacchus3.2.1:12:1:121768101:1	77656043	77694898	D	Ribonuclease P protein subunit p30 isoform b {ECO:0000313|EMBL:JAB06589.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020423}  [Source:UniProtKB/TrEMBL;Acc:F7ESP6]
ENSCJAG00000003770	KNOWN_BY_PROJECTION	protein_coding	PLXNA2	chromosome:C_jacchus3.2.1:19:1:49578535:1	29982756	30187010	R	plexin A2 [Source:HGNC Symbol;Acc:HGNC:9100]
ENSCJAG00000017065	KNOWN	protein_coding	CTNNAL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	152374553	152446532	R	Alpha-catulin {ECO:0000313|EMBL:JAB27901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031514}  [Source:UniProtKB/TrEMBL;Acc:F7I0U2]
ENSCJAG00000011075	KNOWN_BY_PROJECTION	protein_coding	HTR7	chromosome:C_jacchus3.2.1:12:1:121768101:1	77498749	77626312	R	5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled [Source:HGNC Symbol;Acc:HGNC:5302]
ENSCJAG00000011100	NOVEL	protein_coding	ENSCJAG00000011100	chromosome:C_jacchus3.2.1:12:1:121768101:1	77421610	77422983	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020476}  [Source:UniProtKB/TrEMBL;Acc:F7D1Y0]
ENSCJAG00000023368	KNOWN	protein_coding	APOBEC3G	chromosome:C_jacchus3.2.1:15:1:98464013:1	54182614	54185209	D	Callithrix jacchus apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G (APOBEC3G), mRNA. [Source:RefSeq mRNA;Acc:NM_001267742]
ENSCJAG00000005529	KNOWN_BY_PROJECTION	protein_coding	RNF8	chromosome:C_jacchus3.2.1:4:1:171630274:1	38335547	38381836	D	ring finger protein 8, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:10071]
ENSCJAG00000011110	KNOWN_BY_PROJECTION	protein_coding	KIF20B	chromosome:C_jacchus3.2.1:12:1:121768101:1	76383770	76467401	D	kinesin family member 20B [Source:HGNC Symbol;Acc:HGNC:7212]
ENSCJAG00000019849	KNOWN	protein_coding	ARHGAP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	109945734	109968764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036902}  [Source:UniProtKB/TrEMBL;Acc:F6RPJ7]
ENSCJAG00000017058	KNOWN	protein_coding	FAM206A	chromosome:C_jacchus3.2.1:1:1:210400635:1	152366719	152371743	D	Protein FAM206A {ECO:0000313|EMBL:JAB03185.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031356}  [Source:UniProtKB/TrEMBL;Acc:F7HM57]
ENSCJAG00000017055	NOVEL	pseudogene	ENSCJAG00000017055	chromosome:C_jacchus3.2.1:1:1:210400635:1	152363668	152364495	R	<no descrition>
ENSCJAG00000014965	KNOWN	protein_coding	WRAP53	chromosome:C_jacchus3.2.1:5:1:159171411:1	74137547	74155289	R	Telomerase Cajal body protein 1 {ECO:0000313|EMBL:JAB03199.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047431}  [Source:UniProtKB/TrEMBL;Acc:F7II65]
ENSCJAG00000015346	KNOWN_BY_PROJECTION	protein_coding	CNTN6	chromosome:C_jacchus3.2.1:15:1:98464013:1	52931775	53232862	D	contactin 6 [Source:HGNC Symbol;Acc:HGNC:2176]
ENSCJAG00000000966	KNOWN	protein_coding	LEO1	chromosome:C_jacchus3.2.1:10:1:132174527:1	29100951	29133431	R	RNA polymerase-associated protein LEO1 {ECO:0000313|EMBL:JAB03749.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001668}  [Source:UniProtKB/TrEMBL;Acc:F7CCM6]
ENSCJAG00000015344	NOVEL	protein_coding	ENSCJAG00000015344	chromosome:C_jacchus3.2.1:15:1:98464013:1	52061894	52063228	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028241}  [Source:UniProtKB/TrEMBL;Acc:F6WA59]
ENSCJAG00000033782	NOVEL	protein_coding	ENSCJAG00000033782	chromosome:C_jacchus3.2.1:15:1:98464013:1	52045068	52057998	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045456}  [Source:UniProtKB/TrEMBL;Acc:F6QEX3]
ENSCJAG00000019823	KNOWN	protein_coding	ATG13	chromosome:C_jacchus3.2.1:11:1:130397257:1	109868656	109941889	D	Autophagy-related protein 13 isoform 1 {ECO:0000313|EMBL:JAB22835.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049893}  [Source:UniProtKB/TrEMBL;Acc:F6YCQ9]
ENSCJAG00000033255	KNOWN_BY_PROJECTION	protein_coding	EFNB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	74129677	74135855	R	ephrin-B3 [Source:HGNC Symbol;Acc:HGNC:3228]
ENSCJAG00000015257	KNOWN	protein_coding	CHL1	chromosome:C_jacchus3.2.1:15:1:98464013:1	51860457	52019437	D	Neural cell adhesion molecule L1-like protein isoform 1 {ECO:0000313|EMBL:JAB20551.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028224}  [Source:UniProtKB/TrEMBL;Acc:F6XG19]
ENSCJAG00000014029	KNOWN_BY_PROJECTION	protein_coding	ANKRD17	chromosome:C_jacchus3.2.1:3:1:190850796:1	121453781	121631260	D	ankyrin repeat domain 17 [Source:HGNC Symbol;Acc:HGNC:23575]
ENSCJAG00000009740	KNOWN_BY_PROJECTION	protein_coding	PNPT1	chromosome:C_jacchus3.2.1:14:1:108792865:1	51666533	51728565	D	polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
ENSCJAG00000003776	KNOWN_BY_PROJECTION	protein_coding	CD34	chromosome:C_jacchus3.2.1:19:1:49578535:1	29842988	29868311	R	CD34 molecule [Source:HGNC Symbol;Acc:HGNC:1662]
ENSCJAG00000015252	NOVEL	pseudogene	ENSCJAG00000015252	chromosome:C_jacchus3.2.1:15:1:98464013:1	50756256	50756890	D	<no descrition>
ENSCJAG00000015254	NOVEL	pseudogene	ENSCJAG00000015254	chromosome:C_jacchus3.2.1:15:1:98464013:1	51192399	51192844	R	<no descrition>
ENSCJAG00000015203	KNOWN_BY_PROJECTION	protein_coding	HSP90AB1	chromosome:C_jacchus3.2.1:15:1:98464013:1	50502586	50504729	D	heat shock protein 90kDa alpha (cytosolic), class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
ENSCJAG00000000979	KNOWN	protein_coding	TMOD3	chromosome:C_jacchus3.2.1:10:1:132174527:1	28979745	29073203	D	Tropomodulin-3 {ECO:0000313|EMBL:JAB05546.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001687}  [Source:UniProtKB/TrEMBL;Acc:F7BX02]
ENSCJAG00000032649	NOVEL	protein_coding	ENSCJAG00000032649	chromosome:C_jacchus3.2.1:15:1:98464013:1	50537353	50538210	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050701}  [Source:UniProtKB/TrEMBL;Acc:F7EWW8]
ENSCJAG00000015217	KNOWN	protein_coding	CNTN3	chromosome:C_jacchus3.2.1:15:1:98464013:1	50676598	50922554	R	Contactin-3 {ECO:0000313|EMBL:JAB07904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028097}  [Source:UniProtKB/TrEMBL;Acc:F6UJB6]
ENSCJAG00000010339	NOVEL	protein_coding	ENSCJAG00000010339	chromosome:C_jacchus3.2.1:14:1:108792865:1	51577346	51601621	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015892}  [Source:UniProtKB/TrEMBL;Acc:F7G3J1]
ENSCJAG00000010107	KNOWN_BY_PROJECTION	protein_coding	EML6	chromosome:C_jacchus3.2.1:14:1:108792865:1	52523429	52803505	R	echinoderm microtubule associated protein like 6 [Source:HGNC Symbol;Acc:HGNC:35412]
ENSCJAG00000015202	NOVEL	protein_coding	ENSCJAG00000015202	chromosome:C_jacchus3.2.1:15:1:98464013:1	50421005	50422193	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052208}  [Source:UniProtKB/TrEMBL;Acc:F7ILJ6]
ENSCJAG00000019821	KNOWN	protein_coding	HARBI1	chromosome:C_jacchus3.2.1:11:1:130397257:1	109851718	109868606	R	Putative nuclease HARBI1 {ECO:0000313|EMBL:JAB17755.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036839}  [Source:UniProtKB/TrEMBL;Acc:F6TKC2]
ENSCJAG00000011863	NOVEL	protein_coding	ENSCJAG00000011863	chromosome:C_jacchus3.2.1:11:1:130397257:1	109622996	109645349	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021782}  [Source:UniProtKB/TrEMBL;Acc:F6T2R2]
ENSCJAG00000011861	NOVEL	pseudogene	ENSCJAG00000011861	chromosome:C_jacchus3.2.1:11:1:130397257:1	109609332	109610807	R	<no descrition>
ENSCJAG00000011852	KNOWN_BY_PROJECTION	protein_coding	MDK	chromosome:C_jacchus3.2.1:11:1:130397257:1	109606180	109607368	D	midkine (neurite growth-promoting factor 2) [Source:HGNC Symbol;Acc:HGNC:6972]
ENSCJAG00000015181	KNOWN_BY_PROJECTION	protein_coding	PDZRN3	chromosome:C_jacchus3.2.1:15:1:98464013:1	49779569	50004631	R	PDZ domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:17704]
ENSCJAG00000014881	KNOWN_BY_PROJECTION	protein_coding	DNAH2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74000134	74118641	R	dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
ENSCJAG00000009690	KNOWN	protein_coding	EFEMP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	51447594	51511597	D	EGF-containing fibulin-like extracellular matrix protein 1 {ECO:0000313|EMBL:JAB09016.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017833}  [Source:UniProtKB/TrEMBL;Acc:F7HR98]
ENSCJAG00000011773	KNOWN_BY_PROJECTION	protein_coding	DGKZ	chromosome:C_jacchus3.2.1:11:1:130397257:1	109561763	109699000	D	diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
ENSCJAG00000032819	NOVEL	protein_coding	ENSCJAG00000032819	chromosome:C_jacchus3.2.1:19:1:49578535:1	29826324	29827568	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046780}  [Source:UniProtKB/TrEMBL;Acc:F7I1B1]
ENSCJAG00000032606	NOVEL	protein_coding	ENSCJAG00000032606	chromosome:C_jacchus3.2.1:19:1:49578535:1	29771501	29773190	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050436}  [Source:UniProtKB/TrEMBL;Acc:F7HJ83]
ENSCJAG00000009663	KNOWN_BY_PROJECTION	protein_coding	CCDC85A	chromosome:C_jacchus3.2.1:14:1:108792865:1	50987302	51174791	R	coiled-coil domain containing 85A [Source:HGNC Symbol;Acc:HGNC:29400]
ENSCJAG00000014850	KNOWN	protein_coding	KDM6B	chromosome:C_jacchus3.2.1:5:1:159171411:1	73983928	73991865	R	Lysine-specific demethylase 6B {ECO:0000313|EMBL:JAB08051.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027393}  [Source:UniProtKB/TrEMBL;Acc:F7HA40]
ENSCJAG00000032248	NOVEL	pseudogene	ENSCJAG00000032248	chromosome:C_jacchus3.2.1:14:1:108792865:1	50162909	50163342	R	<no descrition>
ENSCJAG00000015155	KNOWN	protein_coding	PPP4R2	chromosome:C_jacchus3.2.1:15:1:98464013:1	49414684	49487157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042620}  [Source:UniProtKB/TrEMBL;Acc:F7B709]
ENSCJAG00000014848	KNOWN	protein_coding	TMEM88	chromosome:C_jacchus3.2.1:5:1:159171411:1	73980937	73981982	R	Transmembrane protein 88 {ECO:0000313|EMBL:JAB06108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027338}  [Source:UniProtKB/TrEMBL;Acc:F7DEI1]
ENSCJAG00000011726	KNOWN_BY_PROJECTION	protein_coding	CREB3L1	chromosome:C_jacchus3.2.1:11:1:130397257:1	109485490	109531411	D	cAMP responsive element binding protein 3-like 1 [Source:HGNC Symbol;Acc:HGNC:18856]
ENSCJAG00000011177	KNOWN	protein_coding	PANK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	76254638	76320983	R	Pantothenate kinase 1 isoform beta {ECO:0000313|EMBL:JAB11155.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020613}  [Source:UniProtKB/TrEMBL;Acc:F7F4W0]
ENSCJAG00000003807	KNOWN	protein_coding	CD46	chromosome:C_jacchus3.2.1:19:1:49578535:1	29716236	29747998	D	Membrane cofactor protein {ECO:0000313|Ensembl:ENSCJAP00000006940}; Membrane cofactor protein isoform 1 {ECO:0000313|EMBL:JAB25486.1}  [Source:UniProtKB/TrEMBL;Acc:F7H0H7]
ENSCJAG00000015152	NOVEL	pseudogene	ENSCJAG00000015152	chromosome:C_jacchus3.2.1:15:1:98464013:1	49332448	49333568	D	<no descrition>
ENSCJAG00000011721	KNOWN_BY_PROJECTION	protein_coding	FBLIM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	109355556	109356382	D	filamin binding LIM protein 1 [Source:HGNC Symbol;Acc:HGNC:24686]
ENSCJAG00000015146	KNOWN_BY_PROJECTION	protein_coding	GXYLT2	chromosome:C_jacchus3.2.1:15:1:98464013:1	49284730	49388547	D	glucoside xylosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:33383]
ENSCJAG00000014843	KNOWN	protein_coding	NAA38	chromosome:C_jacchus3.2.1:5:1:159171411:1	73979130	73980350	D	LSM domain-containing protein 1 {ECO:0000313|EMBL:JAB01599.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027330}  [Source:UniProtKB/TrEMBL;Acc:F7DEN2]
ENSCJAG00000005473	KNOWN	protein_coding	TBC1D22B	chromosome:C_jacchus3.2.1:4:1:171630274:1	38235484	38320813	D	TBC1 domain family member 22B {ECO:0000313|EMBL:JAB02207.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010075}  [Source:UniProtKB/TrEMBL;Acc:F7AUJ2]
ENSCJAG00000011204	KNOWN_BY_PROJECTION	protein_coding	SLC16A12	chromosome:C_jacchus3.2.1:12:1:121768101:1	76089305	76109802	R	solute carrier family 16, member 12 [Source:HGNC Symbol;Acc:HGNC:23094]
ENSCJAG00000003843	NOVEL	protein_coding	ENSCJAG00000003843	chromosome:C_jacchus3.2.1:19:1:49578535:1	29610981	29682125	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006958}  [Source:UniProtKB/TrEMBL;Acc:F7H0C8]
ENSCJAG00000011216	KNOWN	protein_coding	IFIT5	chromosome:C_jacchus3.2.1:12:1:121768101:1	76066932	76071914	D	Interferon-induced protein with tetratricopeptide repeats 5 {ECO:0000313|EMBL:JAB14729.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020664}  [Source:UniProtKB/TrEMBL;Acc:F7DZ13]
ENSCJAG00000014841	KNOWN	protein_coding	CYB5D1	chromosome:C_jacchus3.2.1:5:1:159171411:1	73977404	73978889	R	Cytochrome b5 domain-containing protein 1 {ECO:0000313|EMBL:JAB03536.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027320}  [Source:UniProtKB/TrEMBL;Acc:F7DVD7]
ENSCJAG00000034702	NOVEL	protein_coding	ENSCJAG00000034702	chromosome:C_jacchus3.2.1:12:1:121768101:1	76042585	76060903	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044517}  [Source:UniProtKB/TrEMBL;Acc:F7GK62]
ENSCJAG00000015131	KNOWN_BY_PROJECTION	protein_coding	SHQ1	chromosome:C_jacchus3.2.1:15:1:98464013:1	49142997	49243125	R	SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
ENSCJAG00000035375	KNOWN_BY_PROJECTION	protein_coding	SERBP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	76029901	76030980	R	SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17860]
ENSCJAG00000005472	NOVEL	protein_coding	ENSCJAG00000005472	chromosome:C_jacchus3.2.1:4:1:171630274:1	38226802	38228787	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052060}  [Source:UniProtKB/TrEMBL;Acc:F7IGY5]
ENSCJAG00000005469	NOVEL	pseudogene	ENSCJAG00000005469	chromosome:C_jacchus3.2.1:4:1:171630274:1	38188204	38188669	D	<no descrition>
ENSCJAG00000005468	NOVEL	pseudogene	ENSCJAG00000005468	chromosome:C_jacchus3.2.1:4:1:171630274:1	38177878	38178200	D	<no descrition>
ENSCJAG00000005746	KNOWN	protein_coding	IFIT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	75990441	75998465	D	Interferon-induced protein with tetratricopeptide repeats 1 isoform 1 {ECO:0000313|EMBL:JAB03997.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010534}  [Source:UniProtKB/TrEMBL;Acc:F7IFN6]
ENSCJAG00000005741	KNOWN_BY_PROJECTION	protein_coding	IFIT3	chromosome:C_jacchus3.2.1:12:1:121768101:1	75940421	75946714	D	interferon-induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]
ENSCJAG00000003840	NOVEL	protein_coding	ENSCJAG00000003840	chromosome:C_jacchus3.2.1:19:1:49578535:1	29518210	29689481	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033792}  [Source:UniProtKB/TrEMBL;Acc:F6SGB1]
ENSCJAG00000015125	KNOWN	protein_coding	RYBP	chromosome:C_jacchus3.2.1:15:1:98464013:1	48755552	48826861	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027888}  [Source:UniProtKB/TrEMBL;Acc:F7FRK9]
ENSCJAG00000000991	KNOWN	protein_coding	TMOD2	chromosome:C_jacchus3.2.1:10:1:132174527:1	28905684	28958393	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001709}  [Source:UniProtKB/TrEMBL;Acc:F6YE06]
ENSCJAG00000035099	NOVEL	protein_coding	ENSCJAG00000035099	chromosome:C_jacchus3.2.1:15:1:98464013:1	48743007	48744317	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003231}  [Source:UniProtKB/TrEMBL;Acc:F7GUU3]
ENSCJAG00000013113	KNOWN_BY_PROJECTION	protein_coding	PROK2	chromosome:C_jacchus3.2.1:15:1:98464013:1	48125563	48136902	R	prokineticin 2 [Source:HGNC Symbol;Acc:HGNC:18455]
ENSCJAG00000013119	KNOWN_BY_PROJECTION	protein_coding	GPR27	chromosome:C_jacchus3.2.1:15:1:98464013:1	48111777	48112904	D	G protein-coupled receptor 27 [Source:HGNC Symbol;Acc:HGNC:4482]
ENSCJAG00000001004	KNOWN	protein_coding	LYSMD2	chromosome:C_jacchus3.2.1:10:1:132174527:1	28877902	28905675	R	LysM and putative peptidoglycan-binding domain-containing protein 2 isoform 2 {ECO:0000313|EMBL:JAB20609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001722}  [Source:UniProtKB/TrEMBL;Acc:F6YDQ8]
ENSCJAG00000019698	KNOWN_BY_PROJECTION	protein_coding	CEP290	chromosome:C_jacchus3.2.1:9:1:124281992:1	80183566	80274478	D	centrosomal protein 290kDa [Source:HGNC Symbol;Acc:HGNC:29021]
ENSCJAG00000016966	KNOWN_BY_PROJECTION	protein_coding	IKBKAP	chromosome:C_jacchus3.2.1:1:1:210400635:1	152304138	152366242	R	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein [Source:HGNC Symbol;Acc:HGNC:5959]
ENSCJAG00000014766	KNOWN_BY_PROJECTION	protein_coding	CHD3	chromosome:C_jacchus3.2.1:5:1:159171411:1	73921209	73944993	R	chromodomain helicase DNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:1918]
ENSCJAG00000005441	KNOWN_BY_PROJECTION	protein_coding	PIM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	38133090	38138644	D	Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986]
ENSCJAG00000013120	KNOWN_BY_PROJECTION	protein_coding	EIF4E3	chromosome:C_jacchus3.2.1:15:1:98464013:1	48034977	48112500	R	eukaryotic translation initiation factor 4E family member 3 [Source:HGNC Symbol;Acc:HGNC:31837]
ENSCJAG00000009275	KNOWN	protein_coding	FANCL	chromosome:C_jacchus3.2.1:14:1:108792865:1	49038464	49122281	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017011}  [Source:UniProtKB/TrEMBL;Acc:F7I100]
ENSCJAG00000013138	KNOWN	protein_coding	FOXP1	chromosome:C_jacchus3.2.1:15:1:98464013:1	47231249	47937247	R	Forkhead box protein P1 isoform 1 {ECO:0000313|EMBL:JAB03133.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024269}  [Source:UniProtKB/TrEMBL;Acc:F7FAP4]
ENSCJAG00000014756	KNOWN	protein_coding	TRAPPC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	73900465	73902128	D	Trafficking protein particle complex subunit 1 {ECO:0000313|EMBL:JAB03603.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047517}  [Source:UniProtKB/TrEMBL;Acc:F7I3W8]
ENSCJAG00000009299	KNOWN	protein_coding	VRK2	chromosome:C_jacchus3.2.1:14:1:108792865:1	49122132	49226434	R	Serine/threonine-protein kinase VRK2 isoform 1 {ECO:0000313|EMBL:JAB08271.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004358}  [Source:UniProtKB/TrEMBL;Acc:F7C553]
ENSCJAG00000014760	KNOWN_BY_PROJECTION	protein_coding	KCNAB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	73903057	73909902	D	potassium channel, voltage gated subfamily A regulatory beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:6230]
ENSCJAG00000016067	KNOWN	protein_coding	BRPF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	61642759	61659326	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029633}  [Source:UniProtKB/TrEMBL;Acc:F7HVR4]
ENSCJAG00000017434	KNOWN_BY_PROJECTION	protein_coding	MUSK	chromosome:C_jacchus3.2.1:1:1:210400635:1	154137555	154262683	D	muscle, skeletal, receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:7525]
ENSCJAG00000018263	KNOWN_BY_PROJECTION	protein_coding	CR2	chromosome:C_jacchus3.2.1:19:1:49578535:1	29447385	29512220	D	complement component (3d/Epstein Barr virus) receptor 2 [Source:HGNC Symbol;Acc:HGNC:2336]
ENSCJAG00000016962	NOVEL	pseudogene	ENSCJAG00000016962	chromosome:C_jacchus3.2.1:1:1:210400635:1	152293259	152295557	R	<no descrition>
ENSCJAG00000005381	KNOWN_BY_PROJECTION	protein_coding	FGD2	chromosome:C_jacchus3.2.1:4:1:171630274:1	37942206	37967360	D	FYVE, RhoGEF and PH domain containing 2 [Source:HGNC Symbol;Acc:HGNC:3664]
ENSCJAG00000016960	NOVEL	pseudogene	ENSCJAG00000016960	chromosome:C_jacchus3.2.1:1:1:210400635:1	151015023	151015773	R	<no descrition>
ENSCJAG00000019685	KNOWN	protein_coding	TMTC3	chromosome:C_jacchus3.2.1:9:1:124281992:1	80133611	80183489	R	Transmembrane and TPR repeat-containing protein 3 {ECO:0000313|EMBL:JAB09403.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036574}  [Source:UniProtKB/TrEMBL;Acc:F7F981]
ENSCJAG00000016955	KNOWN_BY_PROJECTION	protein_coding	KLF4	chromosome:C_jacchus3.2.1:1:1:210400635:1	150867067	150871721	R	Kruppel-like factor 4 (gut) [Source:HGNC Symbol;Acc:HGNC:6348]
ENSCJAG00000009271	KNOWN	protein_coding	FSCN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	48883112	48896630	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016979}  [Source:UniProtKB/TrEMBL;Acc:F7C1M7]
ENSCJAG00000011670	KNOWN	protein_coding	PHF21A	chromosome:C_jacchus3.2.1:11:1:130397257:1	109137252	109306418	R	PHD finger protein 21A isoform b {ECO:0000313|EMBL:JAB18364.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021517}  [Source:UniProtKB/TrEMBL;Acc:F6PT05]
ENSCJAG00000014727	KNOWN_BY_PROJECTION	protein_coding	CNTROB	chromosome:C_jacchus3.2.1:5:1:159171411:1	73884612	73899846	R	centrobin, centrosomal BRCA2 interacting protein [Source:HGNC Symbol;Acc:HGNC:29616]
ENSCJAG00000009226	KNOWN	protein_coding	BCL11A	chromosome:C_jacchus3.2.1:14:1:108792865:1	46689918	46793765	D	B-cell lymphoma/leukemia 11A isoform 2 {ECO:0000313|EMBL:JAB31587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016962}  [Source:UniProtKB/TrEMBL;Acc:F7C2C0]
ENSCJAG00000005689	KNOWN	protein_coding	LIPA	chromosome:C_jacchus3.2.1:12:1:121768101:1	75822639	75941965	R	Lipase {ECO:0000256|PIRNR:PIRNR000862}  [Source:UniProtKB/TrEMBL;Acc:F6QJ20]
ENSCJAG00000013245	NOVEL	protein_coding	ENSCJAG00000013245	chromosome:C_jacchus3.2.1:15:1:98464013:1	46920692	46921163	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024328}  [Source:UniProtKB/TrEMBL;Acc:F7HDT7]
ENSCJAG00000013247	NOVEL	pseudogene	ENSCJAG00000013247	chromosome:C_jacchus3.2.1:15:1:98464013:1	46833961	46835219	D	<no descrition>
ENSCJAG00000018314	KNOWN_BY_PROJECTION	protein_coding	CD55	chromosome:C_jacchus3.2.1:19:1:49578535:1	29366597	29401265	D	CD55 molecule, decay accelerating factor for complement (Cromer blood group) [Source:HGNC Symbol;Acc:HGNC:2665]
ENSCJAG00000011627	KNOWN_BY_PROJECTION	protein_coding	GYLTL1B	chromosome:C_jacchus3.2.1:11:1:130397257:1	109127732	109133920	D	glycosyltransferase-like 1B [Source:HGNC Symbol;Acc:HGNC:16522]
ENSCJAG00000013260	KNOWN	protein_coding	MITF	chromosome:C_jacchus3.2.1:15:1:98464013:1	46028908	46269428	D	Microphthalmia-associated transcription factor isoform 1 {ECO:0000313|EMBL:JAB41281.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024418}  [Source:UniProtKB/TrEMBL;Acc:F7FA74]
ENSCJAG00000001016	KNOWN_BY_PROJECTION	protein_coding	SCG3	chromosome:C_jacchus3.2.1:10:1:132174527:1	28834724	28875636	D	secretogranin III [Source:HGNC Symbol;Acc:HGNC:13707]
ENSCJAG00000014688	KNOWN_BY_PROJECTION	protein_coding	GUCY2D	chromosome:C_jacchus3.2.1:5:1:159171411:1	73813145	73832927	R	guanylate cyclase 2D, membrane (retina-specific) [Source:HGNC Symbol;Acc:HGNC:4689]
ENSCJAG00000016908	NOVEL	protein_coding	ENSCJAG00000016908	chromosome:C_jacchus3.2.1:1:1:210400635:1	150678077	150725514	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031175}  [Source:UniProtKB/TrEMBL;Acc:F7IM73]
ENSCJAG00000019661	KNOWN	protein_coding	KITLG	chromosome:C_jacchus3.2.1:9:1:124281992:1	79717959	79798785	D	Kit ligand isoform b {ECO:0000313|EMBL:JAB28202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036546}  [Source:UniProtKB/TrEMBL;Acc:F7G0W2]
ENSCJAG00000034556	NOVEL	protein_coding	ENSCJAG00000034556	chromosome:C_jacchus3.2.1:19:1:49578535:1	29259723	29277428	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049786}  [Source:UniProtKB/TrEMBL;Acc:F7CBV1]
ENSCJAG00000016879	KNOWN_BY_PROJECTION	protein_coding	ZNF462	chromosome:C_jacchus3.2.1:1:1:210400635:1	150240091	150393302	D	zinc finger protein 462 [Source:HGNC Symbol;Acc:HGNC:21684]
ENSCJAG00000013309	NOVEL	protein_coding	ENSCJAG00000013309	chromosome:C_jacchus3.2.1:15:1:98464013:1	45809577	45810226	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024421}  [Source:UniProtKB/TrEMBL;Acc:F7F9X7]
ENSCJAG00000018336	KNOWN_BY_PROJECTION	protein_coding	C4BPA	chromosome:C_jacchus3.2.1:19:1:49578535:1	29192755	29242984	D	complement component 4 binding protein, alpha [Source:HGNC Symbol;Acc:HGNC:1325]
ENSCJAG00000013312	KNOWN_BY_PROJECTION	protein_coding	FRMD4B	chromosome:C_jacchus3.2.1:15:1:98464013:1	45444933	45655838	R	FERM domain containing 4B [Source:HGNC Symbol;Acc:HGNC:24886]
ENSCJAG00000009102	KNOWN_BY_PROJECTION	protein_coding	PAPOLG	chromosome:C_jacchus3.2.1:14:1:108792865:1	46442320	46486581	R	poly(A) polymerase gamma [Source:HGNC Symbol;Acc:HGNC:14982]
ENSCJAG00000005615	KNOWN_BY_PROJECTION	protein_coding	FAS	chromosome:C_jacchus3.2.1:12:1:121768101:1	75598190	75625412	D	Fas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]
ENSCJAG00000011594	KNOWN_BY_PROJECTION	protein_coding	PEX16	chromosome:C_jacchus3.2.1:11:1:130397257:1	109113284	109121383	R	peroxisomal biogenesis factor 16 [Source:HGNC Symbol;Acc:HGNC:8857]
ENSCJAG00000014652	KNOWN_BY_PROJECTION	protein_coding	ALOX12B	chromosome:C_jacchus3.2.1:5:1:159171411:1	73758072	73771635	D	arachidonate 12-lipoxygenase, 12R type [Source:HGNC Symbol;Acc:HGNC:430]
ENSCJAG00000019658	NOVEL	protein_coding	ENSCJAG00000019658	chromosome:C_jacchus3.2.1:9:1:124281992:1	79454209	79457499	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036493}  [Source:UniProtKB/TrEMBL;Acc:F7HDG4]
ENSCJAG00000013357	KNOWN	protein_coding	LMOD3	chromosome:C_jacchus3.2.1:15:1:98464013:1	45373836	45388562	R	Leiomodin-3 {ECO:0000313|EMBL:JAB02449.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024548}  [Source:UniProtKB/TrEMBL;Acc:F7GMF9]
ENSCJAG00000011591	KNOWN_BY_PROJECTION	protein_coding	C11orf94	chromosome:C_jacchus3.2.1:11:1:130397257:1	109110217	109110958	R	chromosome 11 open reading frame 94 [Source:HGNC Symbol;Acc:HGNC:37213]
ENSCJAG00000019653	KNOWN	protein_coding	DUSP6	chromosome:C_jacchus3.2.1:9:1:124281992:1	78930933	78935350	D	Dual specificity protein phosphatase {ECO:0000256|PIRNR:PIRNR000939}  [Source:UniProtKB/TrEMBL;Acc:F7HDH0]
ENSCJAG00000016868	KNOWN	protein_coding	TMEM38B	chromosome:C_jacchus3.2.1:1:1:210400635:1	149061245	149124533	D	Trimeric intracellular cation channel type B {ECO:0000313|EMBL:JAB06443.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031051}  [Source:UniProtKB/TrEMBL;Acc:F7HYQ9]
ENSCJAG00000018353	KNOWN_BY_PROJECTION	protein_coding	C4BPB	chromosome:C_jacchus3.2.1:19:1:49578535:1	29176615	29187941	D	complement component 4 binding protein, beta [Source:HGNC Symbol;Acc:HGNC:1328]
ENSCJAG00000013370	KNOWN	protein_coding	ARL6IP5	chromosome:C_jacchus3.2.1:15:1:98464013:1	45351653	45372053	D	PRA1 family protein 3 {ECO:0000313|EMBL:JAB11768.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024571}  [Source:UniProtKB/TrEMBL;Acc:F7G0P2]
ENSCJAG00000011571	KNOWN_BY_PROJECTION	protein_coding	MAPK8IP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	109088006	109109471	D	mitogen-activated protein kinase 8 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:6882]
ENSCJAG00000018459	NOVEL	protein_coding	ENSCJAG00000018459	chromosome:C_jacchus3.2.1:19:1:49578535:1	29147177	29148039	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034208}  [Source:UniProtKB/TrEMBL;Acc:F6UMQ5]
ENSCJAG00000005576	KNOWN_BY_PROJECTION	protein_coding	ACTA2	chromosome:C_jacchus3.2.1:12:1:121768101:1	75547109	75600424	R	actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:HGNC:130]
ENSCJAG00000018460	KNOWN_BY_PROJECTION	protein_coding	YOD1	chromosome:C_jacchus3.2.1:19:1:49578535:1	29136100	29138486	R	YOD1 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:25035]
ENSCJAG00000011547	KNOWN_BY_PROJECTION	protein_coding	SLC35C1	chromosome:C_jacchus3.2.1:11:1:130397257:1	109002587	109011080	D	solute carrier family 35 (GDP-fucose transporter), member C1 [Source:HGNC Symbol;Acc:HGNC:20197]
ENSCJAG00000011541	NOVEL	protein_coding	ENSCJAG00000011541	chromosome:C_jacchus3.2.1:11:1:130397257:1	108969747	108970370	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021210}  [Source:UniProtKB/TrEMBL;Acc:F6RNB6]
ENSCJAG00000011551	KNOWN_BY_PROJECTION	protein_coding	CRY2	chromosome:C_jacchus3.2.1:11:1:130397257:1	108862177	109085199	D	cryptochrome circadian clock 2 [Source:HGNC Symbol;Acc:HGNC:2385]
ENSCJAG00000005484	KNOWN	protein_coding	STAMBPL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	75491103	75534686	D	AMSH-like protease {ECO:0000313|EMBL:JAB10798.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010148}  [Source:UniProtKB/TrEMBL;Acc:F6YBJ2]
ENSCJAG00000005273	NOVEL	protein_coding	ENSCJAG00000005273	chromosome:C_jacchus3.2.1:4:1:171630274:1	37898364	37916354	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009765}  [Source:UniProtKB/TrEMBL;Acc:F7GWT3]
ENSCJAG00000011537	KNOWN	protein_coding	CHST1	chromosome:C_jacchus3.2.1:11:1:130397257:1	108846991	108850705	R	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F6RNI1]
ENSCJAG00000005477	KNOWN_BY_PROJECTION	protein_coding	ANKRD22	chromosome:C_jacchus3.2.1:12:1:121768101:1	75426992	75460741	R	ankyrin repeat domain 22 [Source:HGNC Symbol;Acc:HGNC:28321]
ENSCJAG00000011536	NOVEL	protein_coding	ENSCJAG00000011536	chromosome:C_jacchus3.2.1:11:1:130397257:1	108567725	108568211	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021197}  [Source:UniProtKB/TrEMBL;Acc:F6S0F3]
ENSCJAG00000005454	KNOWN_BY_PROJECTION	protein_coding	LIPM	chromosome:C_jacchus3.2.1:12:1:121768101:1	75407789	75427631	D	lipase, family member M [Source:HGNC Symbol;Acc:HGNC:23455]
ENSCJAG00000014599	KNOWN_BY_PROJECTION	protein_coding	ALOXE3	chromosome:C_jacchus3.2.1:5:1:159171411:1	73722857	73947304	D	arachidonate lipoxygenase 3 [Source:HGNC Symbol;Acc:HGNC:13743]
ENSCJAG00000013395	KNOWN	protein_coding	UBA3	chromosome:C_jacchus3.2.1:15:1:98464013:1	45320446	45346793	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024764}  [Source:UniProtKB/TrEMBL;Acc:F6R524]
ENSCJAG00000016800	KNOWN	protein_coding	FSD1L	chromosome:C_jacchus3.2.1:1:1:210400635:1	148817513	148898585	D	FSD1-like protein isoform 1 {ECO:0000313|EMBL:JAB24594.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030974}  [Source:UniProtKB/TrEMBL;Acc:F6VMA5]
ENSCJAG00000011527	KNOWN	protein_coding	SYT13	chromosome:C_jacchus3.2.1:11:1:130397257:1	108433278	108479838	R	Synaptotagmin-13 isoform 1 {ECO:0000313|EMBL:JAB15616.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021194}  [Source:UniProtKB/TrEMBL;Acc:F6S0H8]
ENSCJAG00000019637	KNOWN	protein_coding	POC1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	78769392	78864836	D	POC1 centriolar protein homolog B isoform a {ECO:0000313|EMBL:JAB10262.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036460}  [Source:UniProtKB/TrEMBL;Acc:F7D718]
ENSCJAG00000033859	NOVEL	protein_coding	ENSCJAG00000033859	chromosome:C_jacchus3.2.1:11:1:130397257:1	108399382	108404824	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048094}  [Source:UniProtKB/TrEMBL;Acc:F7EYC9]
ENSCJAG00000011508	KNOWN_BY_PROJECTION	protein_coding	PRDM11	chromosome:C_jacchus3.2.1:11:1:130397257:1	108337501	108415705	D	PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
ENSCJAG00000011462	KNOWN	protein_coding	TP53I11	chromosome:C_jacchus3.2.1:11:1:130397257:1	108132175	108149228	R	Tumor protein p53-inducible protein 11 {ECO:0000313|EMBL:JAB06731.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021092}  [Source:UniProtKB/TrEMBL;Acc:F6TJB7]
ENSCJAG00000005267	KNOWN_BY_PROJECTION	protein_coding	PI16	chromosome:C_jacchus3.2.1:4:1:171630274:1	37891212	37893685	D	peptidase inhibitor 16 [Source:HGNC Symbol;Acc:HGNC:21245]
ENSCJAG00000011479	KNOWN_BY_PROJECTION	protein_coding	TSPAN18	chromosome:C_jacchus3.2.1:11:1:130397257:1	108102039	108129105	D	tetraspanin 18 [Source:HGNC Symbol;Acc:HGNC:20660]
ENSCJAG00000031200	NOVEL	pseudogene	ENSCJAG00000031200	chromosome:C_jacchus3.2.1:11:1:130397257:1	107819720	107820999	D	<no descrition>
ENSCJAG00000014589	KNOWN	protein_coding	HES7	chromosome:C_jacchus3.2.1:5:1:159171411:1	73717767	73721250	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026874}  [Source:UniProtKB/TrEMBL;Acc:F7I1Y8]
ENSCJAG00000008975	KNOWN_BY_PROJECTION	protein_coding	REL	chromosome:C_jacchus3.2.1:14:1:108792865:1	46309158	46348648	R	v-rel avian reticuloendotheliosis viral oncogene homolog [Source:HGNC Symbol;Acc:HGNC:9954]
ENSCJAG00000005450	NOVEL	protein_coding	ENSCJAG00000005450	chromosome:C_jacchus3.2.1:12:1:121768101:1	75384048	75385492	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009943}  [Source:UniProtKB/TrEMBL;Acc:F7HHB0]
ENSCJAG00000005432	KNOWN_BY_PROJECTION	protein_coding	LIPN	chromosome:C_jacchus3.2.1:12:1:121768101:1	75349086	75373832	D	lipase, family member N [Source:HGNC Symbol;Acc:HGNC:23452]
ENSCJAG00000016840	KNOWN_BY_PROJECTION	protein_coding	FKTN	chromosome:C_jacchus3.2.1:1:1:210400635:1	148788772	148982244	D	fukutin [Source:HGNC Symbol;Acc:HGNC:3622]
ENSCJAG00000005403	KNOWN_BY_PROJECTION	protein_coding	LIPK	chromosome:C_jacchus3.2.1:12:1:121768101:1	75307628	75340462	D	lipase, family member K [Source:HGNC Symbol;Acc:HGNC:23444]
ENSCJAG00000013491	KNOWN	protein_coding	TMF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	45277291	45316275	R	TATA element modulatory factor {ECO:0000313|EMBL:JAB06889.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024933}  [Source:UniProtKB/TrEMBL;Acc:F6REA6]
ENSCJAG00000009054	KNOWN_BY_PROJECTION	protein_coding	PUS10	chromosome:C_jacchus3.2.1:14:1:108792865:1	46220406	46287228	D	pseudouridylate synthase 10 [Source:HGNC Symbol;Acc:HGNC:26505]
ENSCJAG00000011453	KNOWN	protein_coding	CD82	chromosome:C_jacchus3.2.1:11:1:130397257:1	107746702	107801018	D	CD82 antigen isoform 1 {ECO:0000313|EMBL:JAB16650.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021070}  [Source:UniProtKB/TrEMBL;Acc:F6TVI2]
ENSCJAG00000005360	KNOWN_BY_PROJECTION	protein_coding	LIPF	chromosome:C_jacchus3.2.1:12:1:121768101:1	75263793	75280437	D	lipase, gastric [Source:HGNC Symbol;Acc:HGNC:6622]
ENSCJAG00000009053	NOVEL	protein_coding	ENSCJAG00000009053	chromosome:C_jacchus3.2.1:14:1:108792865:1	46212309	46212981	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016572}  [Source:UniProtKB/TrEMBL;Acc:F7A554]
ENSCJAG00000018370	KNOWN	protein_coding	PFKFB2	chromosome:C_jacchus3.2.1:19:1:49578535:1	29119937	29166327	D	6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 2 isoform a {ECO:0000313|EMBL:JAB09141.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034148}  [Source:UniProtKB/TrEMBL;Acc:F6X0Q4]
ENSCJAG00000009037	KNOWN_BY_PROJECTION	protein_coding	PEX13	chromosome:C_jacchus3.2.1:14:1:108792865:1	46197691	46220743	R	peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:HGNC:8855]
ENSCJAG00000011438	KNOWN_BY_PROJECTION	protein_coding	ALX4	chromosome:C_jacchus3.2.1:11:1:130397257:1	107432212	107478703	R	ALX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:450]
ENSCJAG00000005354	KNOWN_BY_PROJECTION	protein_coding	LIPJ	chromosome:C_jacchus3.2.1:12:1:121768101:1	75209677	75217313	D	lipase, family member J [Source:HGNC Symbol;Acc:HGNC:21773]
ENSCJAG00000013564	KNOWN_BY_PROJECTION	protein_coding	EOGT	chromosome:C_jacchus3.2.1:15:1:98464013:1	45228971	45270933	R	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [Source:HGNC Symbol;Acc:HGNC:28526]
ENSCJAG00000009029	KNOWN	protein_coding	KIAA1841	chromosome:C_jacchus3.2.1:14:1:108792865:1	46104965	46184145	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016552}; Uncharacterized protein KIAA1841 isoform a {ECO:0000313|EMBL:JAB08261.1}  [Source:UniProtKB/TrEMBL;Acc:F7B5Y0]
ENSCJAG00000034768	KNOWN_BY_PROJECTION	protein_coding	AHSA2	chromosome:C_jacchus3.2.1:14:1:108792865:1	46047749	46057177	R	AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) [Source:HGNC Symbol;Acc:HGNC:20437]
ENSCJAG00000016784	KNOWN_BY_PROJECTION	protein_coding	SLC44A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	148616343	148807107	D	solute carrier family 44 (choline transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:18798]
ENSCJAG00000013595	KNOWN_BY_PROJECTION	protein_coding	FAM19A4	chromosome:C_jacchus3.2.1:15:1:98464013:1	44958531	45181221	R	family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 [Source:HGNC Symbol;Acc:HGNC:21591]
ENSCJAG00000008143	NOVEL	protein_coding	ENSCJAG00000008143	chromosome:C_jacchus3.2.1:15:1:98464013:1	45024412	45025476	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008949}  [Source:UniProtKB/TrEMBL;Acc:F7I5N4]
ENSCJAG00000013604	NOVEL	protein_coding	ENSCJAG00000013604	chromosome:C_jacchus3.2.1:15:1:98464013:1	44816340	44817902	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025012}  [Source:UniProtKB/TrEMBL;Acc:F7AJU4]
ENSCJAG00000033322	NOVEL	protein_coding	ENSCJAG00000033322	chromosome:C_jacchus3.2.1:15:1:98464013:1	44652811	44653485	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051475}  [Source:UniProtKB/TrEMBL;Acc:F7AHV6]
ENSCJAG00000009022	NOVEL	protein_coding	ENSCJAG00000009022	chromosome:C_jacchus3.2.1:14:1:108792865:1	46026681	46047154	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043317}  [Source:UniProtKB/TrEMBL;Acc:F7HW76]
ENSCJAG00000013607	KNOWN_BY_PROJECTION	protein_coding	FAM19A1	chromosome:C_jacchus3.2.1:15:1:98464013:1	44636800	44759065	D	family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 [Source:HGNC Symbol;Acc:HGNC:21587]
ENSCJAG00000019568	KNOWN	protein_coding	ATP2B1	chromosome:C_jacchus3.2.1:9:1:124281992:1	78631273	78697511	D	Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146}  [Source:UniProtKB/TrEMBL;Acc:F7DPP1]
ENSCJAG00000009286	NOVEL	pseudogene	ENSCJAG00000009286	chromosome:C_jacchus3.2.1:15:1:98464013:1	44483758	44484063	D	<no descrition>
ENSCJAG00000037769	NOVEL	protein_coding	ENSCJAG00000037769	chromosome:C_jacchus3.2.1:15:1:98464013:1	44471696	44498400	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052110}  [Source:UniProtKB/TrEMBL;Acc:F7I2R8]
ENSCJAG00000033738	NOVEL	protein_coding	ENSCJAG00000033738	chromosome:C_jacchus3.2.1:14:1:108792865:1	45756606	45878785	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048385}  [Source:UniProtKB/TrEMBL;Acc:F7G1V4]
ENSCJAG00000018463	KNOWN_BY_PROJECTION	protein_coding	C1orf116	chromosome:C_jacchus3.2.1:19:1:49578535:1	29101677	29116341	R	chromosome 1 open reading frame 116 [Source:HGNC Symbol;Acc:HGNC:28667]
ENSCJAG00000013610	KNOWN	protein_coding	SUCLG2	chromosome:C_jacchus3.2.1:15:1:98464013:1	43614175	43905403	R	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform 2 {ECO:0000313|EMBL:JAB09891.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025034}  [Source:UniProtKB/TrEMBL;Acc:F7A1W3]
ENSCJAG00000018466	KNOWN_BY_PROJECTION	protein_coding	FCAMR	chromosome:C_jacchus3.2.1:19:1:49578535:1	29049902	29060850	R	Fc receptor, IgA, IgM, high affinity [Source:HGNC Symbol;Acc:HGNC:24692]
ENSCJAG00000016773	NOVEL	pseudogene	ENSCJAG00000016773	chromosome:C_jacchus3.2.1:1:1:210400635:1	148368853	148369907	R	<no descrition>
ENSCJAG00000016777	KNOWN_BY_PROJECTION	protein_coding	EIF4A3	chromosome:C_jacchus3.2.1:1:1:210400635:1	148553956	148556926	D	eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]
ENSCJAG00000000871	NOVEL	pseudogene	ENSCJAG00000000871	chromosome:C_jacchus3.2.1:19:1:49578535:1	32754554	32755515	D	<no descrition>
ENSCJAG00000000875	KNOWN_BY_PROJECTION	protein_coding	GCSAML	chromosome:C_jacchus3.2.1:19:1:49578535:1	32687909	32733274	R	germinal center-associated, signaling and motility-like [Source:HGNC Symbol;Acc:HGNC:29583]
ENSCJAG00000023369	NOVEL	protein_coding	ENSCJAG00000023369	chromosome:C_jacchus3.2.1:19:1:49578535:1	32675995	32677238	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7CU92]
ENSCJAG00000036674	NOVEL	protein_coding	ENSCJAG00000036674	chromosome:C_jacchus3.2.1:1:1:210400635:1	153953582	154054089	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032103}  [Source:UniProtKB/TrEMBL;Acc:F7GRP7]
ENSCJAG00000008869	KNOWN_BY_PROJECTION	protein_coding	OR1C1	chromosome:C_jacchus3.2.1:19:1:49578535:1	32558221	32582953	D	olfactory receptor, family 1, subfamily C, member 1 [Source:HGNC Symbol;Acc:HGNC:8182]
ENSCJAG00000008880	NOVEL	pseudogene	ENSCJAG00000008880	chromosome:C_jacchus3.2.1:19:1:49578535:1	32548406	32549274	R	<no descrition>
ENSCJAG00000008515	KNOWN	protein_coding	IDE	chromosome:C_jacchus3.2.1:12:1:121768101:1	79283028	79419010	R	Insulin-degrading enzyme isoform 1 {ECO:0000313|EMBL:JAB09457.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015821}  [Source:UniProtKB/TrEMBL;Acc:F7GU26]
ENSCJAG00000008884	KNOWN_BY_PROJECTION	protein_coding	TRIM58	chromosome:C_jacchus3.2.1:19:1:49578535:1	32521013	32540199	R	tripartite motif containing 58 [Source:HGNC Symbol;Acc:HGNC:24150]
ENSCJAG00000008903	KNOWN_BY_PROJECTION	protein_coding	OR2AJ1	chromosome:C_jacchus3.2.1:19:1:49578535:1	32485979	32488419	R	olfactory receptor, family 2, subfamily AJ, member 1 [Source:HGNC Symbol;Acc:HGNC:15001]
ENSCJAG00000008908	NOVEL	protein_coding	ENSCJAG00000008908	chromosome:C_jacchus3.2.1:19:1:49578535:1	32482307	32484013	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6V532]
ENSCJAG00000013628	KNOWN_BY_PROJECTION	protein_coding	KBTBD8	chromosome:C_jacchus3.2.1:15:1:98464013:1	43184098	43200040	D	kelch repeat and BTB (POZ) domain containing 8 [Source:HGNC Symbol;Acc:HGNC:30691]
ENSCJAG00000011414	KNOWN_BY_PROJECTION	protein_coding	EXT2	chromosome:C_jacchus3.2.1:11:1:130397257:1	107257965	107413259	D	exostosin glycosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:3513]
ENSCJAG00000005348	KNOWN_BY_PROJECTION	protein_coding	RNLS	chromosome:C_jacchus3.2.1:12:1:121768101:1	74883376	74976659	R	renalase, FAD-dependent amine oxidase [Source:HGNC Symbol;Acc:HGNC:25641]
ENSCJAG00000031465	NOVEL	protein_coding	ENSCJAG00000031465	chromosome:C_jacchus3.2.1:9:1:124281992:1	77280374	77287169	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051120}  [Source:UniProtKB/TrEMBL;Acc:F6ZKU8]
ENSCJAG00000019561	KNOWN_BY_PROJECTION	protein_coding	CCER1	chromosome:C_jacchus3.2.1:9:1:124281992:1	77271700	77272875	D	coiled-coil glutamate-rich protein 1 [Source:HGNC Symbol;Acc:HGNC:28373]
ENSCJAG00000014556	KNOWN_BY_PROJECTION	protein_coding	PER1	chromosome:C_jacchus3.2.1:5:1:159171411:1	73688793	73703661	D	period circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845]
ENSCJAG00000005322	KNOWN	protein_coding	PTEN	chromosome:C_jacchus3.2.1:12:1:121768101:1	74464580	74564089	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009768}  [Source:UniProtKB/TrEMBL;Acc:F7GWS7]
ENSCJAG00000013635	KNOWN_BY_PROJECTION	protein_coding	LRIG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	42564207	42692857	R	leucine-rich repeats and immunoglobulin-like domains 1 [Source:HGNC Symbol;Acc:HGNC:17360]
ENSCJAG00000034545	NOVEL	pseudogene	ENSCJAG00000034545	chromosome:C_jacchus3.2.1:12:1:121768101:1	74436066	74436433	D	<no descrition>
ENSCJAG00000001038	KNOWN	protein_coding	DMXL2	chromosome:C_jacchus3.2.1:10:1:132174527:1	28581870	28763905	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001981}  [Source:UniProtKB/TrEMBL;Acc:F6WFP1]
ENSCJAG00000019555	KNOWN_BY_PROJECTION	protein_coding	EPYC	chromosome:C_jacchus3.2.1:9:1:124281992:1	77216981	77257980	D	epiphycan [Source:HGNC Symbol;Acc:HGNC:3053]
ENSCJAG00000011398	KNOWN_BY_PROJECTION	protein_coding	ACCS	chromosome:C_jacchus3.2.1:11:1:130397257:1	107225761	107247062	D	1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) [Source:HGNC Symbol;Acc:HGNC:23989]
ENSCJAG00000019551	KNOWN_BY_PROJECTION	protein_coding	KERA	chromosome:C_jacchus3.2.1:9:1:124281992:1	77163212	77171124	D	keratocan [Source:HGNC Symbol;Acc:HGNC:6309]
ENSCJAG00000005296	KNOWN	protein_coding	ATAD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	74344297	74401298	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009711}  [Source:UniProtKB/TrEMBL;Acc:F7H1Z5]
ENSCJAG00000011384	NOVEL	protein_coding	ENSCJAG00000011384	chromosome:C_jacchus3.2.1:11:1:130397257:1	107206347	107217912	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020938}  [Source:UniProtKB/TrEMBL;Acc:F7H5W9]
ENSCJAG00000019549	KNOWN_BY_PROJECTION	protein_coding	LUM	chromosome:C_jacchus3.2.1:9:1:124281992:1	77114094	77121941	D	lumican [Source:HGNC Symbol;Acc:HGNC:6724]
ENSCJAG00000011376	NOVEL	pseudogene	ENSCJAG00000011376	chromosome:C_jacchus3.2.1:11:1:130397257:1	107126799	107127616	R	<no descrition>
ENSCJAG00000018483	KNOWN_BY_PROJECTION	protein_coding	PIGR	chromosome:C_jacchus3.2.1:19:1:49578535:1	29020218	29037629	R	polymeric immunoglobulin receptor [Source:HGNC Symbol;Acc:HGNC:8968]
ENSCJAG00000013660	KNOWN	protein_coding	SLC25A26	chromosome:C_jacchus3.2.1:15:1:98464013:1	42379948	42562722	D	S-adenosylmethionine mitochondrial carrier protein isoform a {ECO:0000313|EMBL:JAB11279.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025131}  [Source:UniProtKB/TrEMBL;Acc:F6UCJ8]
ENSCJAG00000034805	NOVEL	protein_coding	ENSCJAG00000034805	chromosome:C_jacchus3.2.1:19:1:49578535:1	28989271	28989924	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046938}  [Source:UniProtKB/TrEMBL;Acc:F7I5V0]
ENSCJAG00000011353	KNOWN_BY_PROJECTION	protein_coding	ALKBH3	chromosome:C_jacchus3.2.1:11:1:130397257:1	107029539	107067156	D	alkB, alkylation repair homolog 3 (E. coli) [Source:HGNC Symbol;Acc:HGNC:30141]
ENSCJAG00000016094	KNOWN_BY_PROJECTION	protein_coding	PPIL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	37849340	37870510	R	peptidylprolyl isomerase (cyclophilin)-like 1 [Source:HGNC Symbol;Acc:HGNC:9260]
ENSCJAG00000033018	NOVEL	pseudogene	ENSCJAG00000033018	chromosome:C_jacchus3.2.1:15:1:98464013:1	42359435	42359718	R	<no descrition>
ENSCJAG00000019474	NOVEL	pseudogene	ENSCJAG00000019474	chromosome:C_jacchus3.2.1:15:1:98464013:1	42221806	42223125	R	<no descrition>
ENSCJAG00000019479	NOVEL	protein_coding	ENSCJAG00000019479	chromosome:C_jacchus3.2.1:15:1:98464013:1	41876044	41876968	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036169}  [Source:UniProtKB/TrEMBL;Acc:F7H8Y4]
ENSCJAG00000014540	KNOWN	protein_coding	VAMP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	73682047	73756073	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026770}; Vesicle-associated membrane protein 2 {ECO:0000313|EMBL:JAB06115.1}  [Source:UniProtKB/TrEMBL;Acc:F7IG62]
ENSCJAG00000014534	KNOWN	protein_coding	TMEM107	chromosome:C_jacchus3.2.1:5:1:159171411:1	73665346	73667983	D	Transmembrane protein 107 isoform 2 {ECO:0000313|EMBL:JAB08581.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026750}  [Source:UniProtKB/TrEMBL;Acc:F7IIJ6]
ENSCJAG00000011351	NOVEL	pseudogene	ENSCJAG00000011351	chromosome:C_jacchus3.2.1:11:1:130397257:1	106884554	106885358	D	<no descrition>
ENSCJAG00000001160	KNOWN_BY_PROJECTION	protein_coding	GLDN	chromosome:C_jacchus3.2.1:10:1:132174527:1	28479300	28538238	D	gliomedin [Source:HGNC Symbol;Acc:HGNC:29514]
ENSCJAG00000019439	KNOWN_BY_PROJECTION	protein_coding	MAGI1	chromosome:C_jacchus3.2.1:15:1:98464013:1	41573588	41709405	R	membrane associated guanylate kinase, WW and PDZ domain containing 1 [Source:HGNC Symbol;Acc:HGNC:946]
ENSCJAG00000018496	KNOWN	protein_coding	FAIM3	chromosome:C_jacchus3.2.1:19:1:49578535:1	28986499	29010061	R	Fas apoptotic inhibitory molecule 3 isoform a {ECO:0000313|EMBL:JAB16354.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034310}  [Source:UniProtKB/TrEMBL;Acc:F6ZAA3]
ENSCJAG00000019481	NOVEL	protein_coding	ENSCJAG00000019481	chromosome:C_jacchus3.2.1:15:1:98464013:1	41399130	41399797	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036173}  [Source:UniProtKB/TrEMBL;Acc:F7H8T1]
ENSCJAG00000011325	KNOWN	protein_coding	HSD17B12	chromosome:C_jacchus3.2.1:11:1:130397257:1	106837668	107011206	D	Estradiol 17-beta-dehydrogenase 12 {ECO:0000313|EMBL:JAB03397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020860}  [Source:UniProtKB/TrEMBL;Acc:F7DYP3]
ENSCJAG00000019483	NOVEL	pseudogene	ENSCJAG00000019483	chromosome:C_jacchus3.2.1:15:1:98464013:1	40912246	40913096	R	<no descrition>
ENSCJAG00000016070	KNOWN_BY_PROJECTION	protein_coding	RAB44	chromosome:C_jacchus3.2.1:4:1:171630274:1	37706149	37722003	D	RAB44, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21068]
ENSCJAG00000011322	NOVEL	pseudogene	ENSCJAG00000011322	chromosome:C_jacchus3.2.1:11:1:130397257:1	106685069	106686174	D	<no descrition>
ENSCJAG00000016086	KNOWN_BY_PROJECTION	protein_coding	CPNE5	chromosome:C_jacchus3.2.1:4:1:171630274:1	37730148	37832630	R	copine V [Source:HGNC Symbol;Acc:HGNC:2318]
ENSCJAG00000016038	KNOWN	protein_coding	CPNE9	chromosome:C_jacchus3.2.1:15:1:98464013:1	61612723	61640611	D	Copine-9 {ECO:0000313|EMBL:JAB13378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033437}  [Source:UniProtKB/TrEMBL;Acc:F6RAS9]
ENSCJAG00000034514	KNOWN_BY_PROJECTION	protein_coding	OR2AK2	chromosome:C_jacchus3.2.1:19:1:49578535:1	32411278	32436752	D	olfactory receptor, family 2, subfamily AK, member 2 [Source:HGNC Symbol;Acc:HGNC:19569]
ENSCJAG00000008914	NOVEL	protein_coding	ENSCJAG00000008914	chromosome:C_jacchus3.2.1:19:1:49578535:1	32349244	32425548	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7IFW7]
ENSCJAG00000016068	KNOWN	protein_coding	CDKN1A	chromosome:C_jacchus3.2.1:4:1:171630274:1	37664038	37671925	D	Callithrix jacchus cyclin-dependent kinase inhibitor 1A (p21, Cip1) (CDKN1A), mRNA. [Source:RefSeq mRNA;Acc:NM_001270723]
ENSCJAG00000014494	KNOWN_BY_PROJECTION	protein_coding	CTC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	73611965	73638194	D	CTS telomere maintenance complex component 1 [Source:HGNC Symbol;Acc:HGNC:26169]
ENSCJAG00000033348	NOVEL	pseudogene	ENSCJAG00000033348	chromosome:C_jacchus3.2.1:11:1:130397257:1	106631804	106632291	D	<no descrition>
ENSCJAG00000019487	KNOWN_BY_PROJECTION	protein_coding	ADAMTS9	chromosome:C_jacchus3.2.1:15:1:98464013:1	40705721	40878549	R	ADAM metallopeptidase with thrombospondin type 1 motif, 9 [Source:HGNC Symbol;Acc:HGNC:13202]
ENSCJAG00000018515	KNOWN_BY_PROJECTION	protein_coding	IL20	chromosome:C_jacchus3.2.1:19:1:49578535:1	28947315	28950342	D	interleukin 20 [Source:HGNC Symbol;Acc:HGNC:6002]
ENSCJAG00000011232	KNOWN	protein_coding	TTC17	chromosome:C_jacchus3.2.1:11:1:130397257:1	106522708	106657366	D	Tetratricopeptide repeat protein 17 {ECO:0000313|EMBL:JAB36998.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020825}  [Source:UniProtKB/TrEMBL;Acc:F7F3Z4]
ENSCJAG00000018510	KNOWN_BY_PROJECTION	protein_coding	IL24	chromosome:C_jacchus3.2.1:19:1:49578535:1	28979020	28986304	D	interleukin 24 [Source:HGNC Symbol;Acc:HGNC:11346]
ENSCJAG00000008877	KNOWN	protein_coding	XPO1	chromosome:C_jacchus3.2.1:14:1:108792865:1	45670224	45732858	D	Exportin-1 {ECO:0000313|EMBL:JAB11266.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016374}  [Source:UniProtKB/TrEMBL;Acc:F7A6J3]
ENSCJAG00000018536	KNOWN	protein_coding	IL10	chromosome:C_jacchus3.2.1:19:1:49578535:1	28846854	28852099	R	Interleukin-10  [Source:UniProtKB/Swiss-Prot;Acc:Q0Z972]
ENSCJAG00000018550	NOVEL	protein_coding	ENSCJAG00000018550	chromosome:C_jacchus3.2.1:19:1:49578535:1	28838389	28838914	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034421}  [Source:UniProtKB/TrEMBL;Acc:F7HND5]
ENSCJAG00000018551	KNOWN_BY_PROJECTION	protein_coding	MAPKAPK2	chromosome:C_jacchus3.2.1:19:1:49578535:1	28793011	28798776	D	mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]
ENSCJAG00000018527	KNOWN_BY_PROJECTION	protein_coding	IL19	chromosome:C_jacchus3.2.1:19:1:49578535:1	28749771	28925550	D	interleukin 19 [Source:HGNC Symbol;Acc:HGNC:5990]
ENSCJAG00000018585	KNOWN_BY_PROJECTION	protein_coding	DYRK3	chromosome:C_jacchus3.2.1:19:1:49578535:1	28691812	28703477	D	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 [Source:HGNC Symbol;Acc:HGNC:3094]
ENSCJAG00000016653	KNOWN_BY_PROJECTION	protein_coding	ABCA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	148028979	148184717	R	ATP-binding cassette, sub-family A (ABC1), member 1 [Source:HGNC Symbol;Acc:HGNC:29]
ENSCJAG00000035534	NOVEL	protein_coding	ENSCJAG00000035534	chromosome:C_jacchus3.2.1:14:1:108792865:1	45620747	45626918	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052089}  [Source:UniProtKB/TrEMBL;Acc:F7IEM3]
ENSCJAG00000008866	NOVEL	pseudogene	ENSCJAG00000008866	chromosome:C_jacchus3.2.1:14:1:108792865:1	45469412	45470468	D	<no descrition>
ENSCJAG00000013986	KNOWN_BY_PROJECTION	protein_coding	ALB	chromosome:C_jacchus3.2.1:3:1:190850796:1	121273635	121291530	R	albumin [Source:HGNC Symbol;Acc:HGNC:399]
ENSCJAG00000008852	KNOWN	protein_coding	FAM161A	chromosome:C_jacchus3.2.1:14:1:108792865:1	45349844	45386436	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016219}  [Source:UniProtKB/TrEMBL;Acc:F6YP42]
ENSCJAG00000019532	KNOWN	protein_coding	PRICKLE2	chromosome:C_jacchus3.2.1:15:1:98464013:1	40271869	40407177	R	Prickle-like protein 2 {ECO:0000313|EMBL:JAB18034.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036280}  [Source:UniProtKB/TrEMBL;Acc:F7E5M5]
ENSCJAG00000019538	NOVEL	pseudogene	ENSCJAG00000019538	chromosome:C_jacchus3.2.1:15:1:98464013:1	40260910	40261283	R	<no descrition>
ENSCJAG00000019540	KNOWN	protein_coding	PSMD6	chromosome:C_jacchus3.2.1:15:1:98464013:1	40181458	40193791	R	26S proteasome non-ATPase regulatory subunit 6 isoform 2 {ECO:0000313|EMBL:JAB04074.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036335}  [Source:UniProtKB/TrEMBL;Acc:F7GY87]
ENSCJAG00000001188	KNOWN_BY_PROJECTION	protein_coding	CYP19A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	28355727	28452442	R	cytochrome P450, family 19, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2594]
ENSCJAG00000016628	KNOWN	protein_coding	NIPSNAP3A	chromosome:C_jacchus3.2.1:1:1:210400635:1	147983122	147997763	D	Protein NipSnap homolog 3A {ECO:0000313|EMBL:JAB05336.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030620}  [Source:UniProtKB/TrEMBL;Acc:F7C559]
ENSCJAG00000034090	NOVEL	pseudogene	ENSCJAG00000034090	chromosome:C_jacchus3.2.1:1:1:210400635:1	147948541	147950252	D	<no descrition>
ENSCJAG00000014431	KNOWN	protein_coding	PFAS	chromosome:C_jacchus3.2.1:5:1:159171411:1	73590131	73610469	R	Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:JAB06450.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026631}  [Source:UniProtKB/TrEMBL;Acc:F7HZR9]
ENSCJAG00000019570	KNOWN_BY_PROJECTION	protein_coding	ATXN7	chromosome:C_jacchus3.2.1:15:1:98464013:1	40030595	40174525	D	ataxin 7 [Source:HGNC Symbol;Acc:HGNC:10560]
ENSCJAG00000022532	NOVEL	protein_coding	ENSCJAG00000022532	chromosome:C_jacchus3.2.1:1:1:210400635:1	147902817	147904620	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7DXA2]
ENSCJAG00000001209	NOVEL	protein_coding	ENSCJAG00000001209	chromosome:C_jacchus3.2.1:10:1:132174527:1	28266844	28268680	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002088}  [Source:UniProtKB/TrEMBL;Acc:F7HVJ7]
ENSCJAG00000016625	KNOWN_BY_PROJECTION	protein_coding	OR13C9	chromosome:C_jacchus3.2.1:1:1:210400635:1	147851236	147869699	R	olfactory receptor, family 13, subfamily C, member 9 [Source:HGNC Symbol;Acc:HGNC:15104]
ENSCJAG00000022529	NOVEL	pseudogene	ENSCJAG00000022529	chromosome:C_jacchus3.2.1:1:1:210400635:1	147758664	147759703	R	<no descrition>
ENSCJAG00000016618	NOVEL	pseudogene	ENSCJAG00000016618	chromosome:C_jacchus3.2.1:1:1:210400635:1	147729644	147730743	D	<no descrition>
ENSCJAG00000016062	KNOWN_BY_PROJECTION	protein_coding	SRSF3	chromosome:C_jacchus3.2.1:4:1:171630274:1	37571156	37579975	D	serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]
ENSCJAG00000031529	NOVEL	protein_coding	ENSCJAG00000031529	chromosome:C_jacchus3.2.1:1:1:210400635:1	147553072	147555157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051080}  [Source:UniProtKB/TrEMBL;Acc:F7C3G1]
ENSCJAG00000031642	NOVEL	pseudogene	ENSCJAG00000031642	chromosome:C_jacchus3.2.1:4:1:171630274:1	37546303	37548729	R	<no descrition>
ENSCJAG00000034899	KNOWN	protein_coding	ENSCJAG00000034899	chromosome:C_jacchus3.2.1:15:1:98464013:1	40002762	40029855	R	THO complex subunit 7 homolog {ECO:0000313|EMBL:JAB07318.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036382}  [Source:UniProtKB/TrEMBL;Acc:F7GEA6]
ENSCJAG00000019599	KNOWN_BY_PROJECTION	protein_coding	C3orf49	chromosome:C_jacchus3.2.1:15:1:98464013:1	39988230	40002392	D	chromosome 3 open reading frame 49 [Source:HGNC Symbol;Acc:HGNC:25190]
ENSCJAG00000005236	KNOWN	protein_coding	PAPSS2	chromosome:C_jacchus3.2.1:12:1:121768101:1	74241626	74336784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009675}  [Source:UniProtKB/TrEMBL;Acc:F7F717]
ENSCJAG00000019614	NOVEL	pseudogene	ENSCJAG00000019614	chromosome:C_jacchus3.2.1:15:1:98464013:1	39578168	39578654	D	<no descrition>
ENSCJAG00000011130	KNOWN	protein_coding	API5	chromosome:C_jacchus3.2.1:11:1:130397257:1	106484222	106515222	D	Apoptosis inhibitor 5 isoform a {ECO:0000313|EMBL:JAB05560.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020676}  [Source:UniProtKB/TrEMBL;Acc:F7DIH2]
ENSCJAG00000019605	KNOWN	protein_coding	SYNPR	chromosome:C_jacchus3.2.1:15:1:98464013:1	39594118	39790020	D	Synaptoporin isoform 2 {ECO:0000313|EMBL:JAB20738.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036403}  [Source:UniProtKB/TrEMBL;Acc:F7F9N1]
ENSCJAG00000031794	NOVEL	protein_coding	ENSCJAG00000031794	chromosome:C_jacchus3.2.1:19:1:49578535:1	32272182	32273652	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HDZ1]
ENSCJAG00000008929	NOVEL	pseudogene	ENSCJAG00000008929	chromosome:C_jacchus3.2.1:19:1:49578535:1	32259725	32260734	R	<no descrition>
ENSCJAG00000035090	NOVEL	protein_coding	ENSCJAG00000035090	chromosome:C_jacchus3.2.1:19:1:49578535:1	32237762	32241835	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045210}  [Source:UniProtKB/TrEMBL;Acc:F6R2D6]
ENSCJAG00000020019	KNOWN	protein_coding	NR1H3	chromosome:C_jacchus3.2.1:11:1:130397257:1	110526063	110545878	D	Oxysterols receptor LXR-alpha isoform 1 {ECO:0000313|EMBL:JAB03007.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037274}  [Source:UniProtKB/TrEMBL;Acc:F6UX04]
ENSCJAG00000018784	KNOWN	protein_coding	SH3BP5L	chromosome:C_jacchus3.2.1:19:1:49578535:1	32157777	32171765	D	SH3 domain-binding protein 5-like {ECO:0000313|EMBL:JAB06825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034899}  [Source:UniProtKB/TrEMBL;Acc:F7IK25]
ENSCJAG00000018778	KNOWN_BY_PROJECTION	protein_coding	ZNF672	chromosome:C_jacchus3.2.1:19:1:49578535:1	32135631	32146272	R	zinc finger protein 672 [Source:HGNC Symbol;Acc:HGNC:26179]
ENSCJAG00000016029	KNOWN_BY_PROJECTION	protein_coding	MTMR14	chromosome:C_jacchus3.2.1:15:1:98464013:1	61559756	61611110	D	myotubularin related protein 14 [Source:HGNC Symbol;Acc:HGNC:26190]
ENSCJAG00000000894	KNOWN_BY_PROJECTION	protein_coding	MYO5A	chromosome:C_jacchus3.2.1:10:1:132174527:1	29503895	29736897	R	myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
ENSCJAG00000014440	KNOWN	protein_coding	DCK	chromosome:C_jacchus3.2.1:3:1:190850796:1	123666293	123697144	R	Deoxycytidine kinase {ECO:0000313|EMBL:JAB08985.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026581}  [Source:UniProtKB/TrEMBL;Acc:F7I991]
ENSCJAG00000016019	KNOWN	protein_coding	LHFPL4	chromosome:C_jacchus3.2.1:15:1:98464013:1	61442021	61489565	R	Lipoma HMGIC fusion partner-like 4 protein {ECO:0000313|EMBL:JAB26814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029481}  [Source:UniProtKB/TrEMBL;Acc:F7IP59]
ENSCJAG00000008509	KNOWN_BY_PROJECTION	protein_coding	MARCH5	chromosome:C_jacchus3.2.1:12:1:121768101:1	79149115	79212561	D	membrane-associated ring finger (C3HC4) 5 [Source:HGNC Symbol;Acc:HGNC:26025]
ENSCJAG00000032369	KNOWN	protein_coding	TNFSF13	chromosome:C_jacchus3.2.1:5:1:159171411:1	74288684	74301579	R	Callithrix jacchus tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), mRNA. [Source:RefSeq mRNA;Acc:NM_001205140]
ENSCJAG00000008506	NOVEL	protein_coding	ENSCJAG00000008506	chromosome:C_jacchus3.2.1:12:1:121768101:1	78989331	78990537	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015650}  [Source:UniProtKB/TrEMBL;Acc:F7GZA5]
ENSCJAG00000020008	KNOWN_BY_PROJECTION	protein_coding	ACP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	110516502	110526198	R	acid phosphatase 2, lysosomal [Source:HGNC Symbol;Acc:HGNC:123]
ENSCJAG00000014422	KNOWN	protein_coding	RANGRF	chromosome:C_jacchus3.2.1:5:1:159171411:1	73570559	73571335	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026529}  [Source:UniProtKB/TrEMBL;Acc:F7IIP8]
ENSCJAG00000014416	KNOWN_BY_PROJECTION	protein_coding	SLC25A35	chromosome:C_jacchus3.2.1:5:1:159171411:1	73565868	73568652	D	solute carrier family 25, member 35 [Source:HGNC Symbol;Acc:HGNC:31921]
ENSCJAG00000019617	NOVEL	protein_coding	ENSCJAG00000019617	chromosome:C_jacchus3.2.1:15:1:98464013:1	39262571	39264266	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036410}  [Source:UniProtKB/TrEMBL;Acc:F7EWU9]
ENSCJAG00000008703	KNOWN	protein_coding	CCT4	chromosome:C_jacchus3.2.1:14:1:108792865:1	45315340	45333231	D	T-complex protein 1 subunit delta {ECO:0000256|RuleBase:RU004192}  [Source:UniProtKB/TrEMBL;Acc:F7EYY0]
ENSCJAG00000014397	KNOWN_BY_PROJECTION	protein_coding	ARHGEF15	chromosome:C_jacchus3.2.1:5:1:159171411:1	73532442	73543752	R	Rho guanine nucleotide exchange factor (GEF) 15 [Source:HGNC Symbol;Acc:HGNC:15590]
ENSCJAG00000005222	KNOWN	protein_coding	MINPP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	74083224	74128695	D	Multiple inositol polyphosphate phosphatase 1 isoform 1 {ECO:0000313|EMBL:JAB08559.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009540}  [Source:UniProtKB/TrEMBL;Acc:F7HI35]
ENSCJAG00000014392	KNOWN_BY_PROJECTION	protein_coding	ODF4	chromosome:C_jacchus3.2.1:5:1:159171411:1	73510952	73517280	R	outer dense fiber of sperm tails 4 [Source:HGNC Symbol;Acc:HGNC:19056]
ENSCJAG00000014384	KNOWN_BY_PROJECTION	protein_coding	KRBA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	73483801	73486593	D	KRAB-A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26989]
ENSCJAG00000032167	NOVEL	pseudogene	ENSCJAG00000032167	chromosome:C_jacchus3.2.1:12:1:121768101:1	73723531	73723763	D	<no descrition>
ENSCJAG00000014372	NOVEL	protein_coding	ENSCJAG00000014372	chromosome:C_jacchus3.2.1:5:1:159171411:1	73472319	73479322	D	<no descrition>
ENSCJAG00000019513	KNOWN	protein_coding	DCN	chromosome:C_jacchus3.2.1:9:1:124281992:1	77047773	77082837	D	Decorin isoform a preproprotein {ECO:0000313|EMBL:JAB06378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036307}  [Source:UniProtKB/TrEMBL;Acc:F7HDP7]
ENSCJAG00000016045	KNOWN	protein_coding	STK38	chromosome:C_jacchus3.2.1:4:1:171630274:1	37465271	37517686	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029553}  [Source:UniProtKB/TrEMBL;Acc:F7IA02]
ENSCJAG00000011116	KNOWN	protein_coding	LRRC4C	chromosome:C_jacchus3.2.1:11:1:130397257:1	103313397	103737235	R	Leucine-rich repeat-containing protein 4C {ECO:0000313|EMBL:JAB31151.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046694}  [Source:UniProtKB/TrEMBL;Acc:F7IK41]
ENSCJAG00000008693	KNOWN	protein_coding	COMMD1	chromosome:C_jacchus3.2.1:14:1:108792865:1	45071977	45312320	R	COMM domain-containing protein 1 {ECO:0000313|EMBL:JAB02411.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015992}  [Source:UniProtKB/TrEMBL;Acc:F7HEJ4]
ENSCJAG00000033475	NOVEL	pseudogene	ENSCJAG00000033475	chromosome:C_jacchus3.2.1:11:1:130397257:1	101751656	101752143	R	<no descrition>
ENSCJAG00000008690	KNOWN	protein_coding	B3GNT2	chromosome:C_jacchus3.2.1:14:1:108792865:1	44972165	45005148	R	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 {ECO:0000313|EMBL:JAB05479.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015975}  [Source:UniProtKB/TrEMBL;Acc:F7DAC3]
ENSCJAG00000011091	KNOWN	protein_coding	C11ORF74	chromosome:C_jacchus3.2.1:11:1:130397257:1	99883627	99950378	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020480}; Uncharacterized protein C11orf74 {ECO:0000313|EMBL:JAB04894.1}  [Source:UniProtKB/TrEMBL;Acc:F7D126]
ENSCJAG00000008682	KNOWN	protein_coding	TMEM17	chromosome:C_jacchus3.2.1:14:1:108792865:1	44655870	44662102	D	Transmembrane protein 17 {ECO:0000313|EMBL:JAB07492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015972}  [Source:UniProtKB/TrEMBL;Acc:F7DAD8]
ENSCJAG00000019620	KNOWN_BY_PROJECTION	protein_coding	CADPS	chromosome:C_jacchus3.2.1:15:1:98464013:1	38546007	39042232	R	Ca++-dependent secretion activator [Source:HGNC Symbol;Acc:HGNC:1426]
ENSCJAG00000018600	KNOWN	protein_coding	EIF2D	chromosome:C_jacchus3.2.1:19:1:49578535:1	28658844	28679639	R	Eukaryotic translation initiation factor 2D isoform 1 {ECO:0000313|EMBL:JAB32767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034651}  [Source:UniProtKB/TrEMBL;Acc:F7IPX2]
ENSCJAG00000011084	KNOWN_BY_PROJECTION	protein_coding	RAG2	chromosome:C_jacchus3.2.1:11:1:130397257:1	99881094	99887523	R	recombination activating gene 2 [Source:HGNC Symbol;Acc:HGNC:9832]
ENSCJAG00000016033	KNOWN	protein_coding	KCTD20	chromosome:C_jacchus3.2.1:4:1:171630274:1	37421786	37461694	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029513}  [Source:UniProtKB/TrEMBL;Acc:F7IH41]
ENSCJAG00000016524	KNOWN	protein_coding	SMC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	147368108	147419294	D	Structural maintenance of chromosomes protein {ECO:0000256|PIRNR:PIRNR005719}  [Source:UniProtKB/TrEMBL;Acc:F6WUZ0]
ENSCJAG00000032336	NOVEL	pseudogene	ENSCJAG00000032336	chromosome:C_jacchus3.2.1:9:1:124281992:1	76803973	76804310	D	<no descrition>
ENSCJAG00000019510	KNOWN	protein_coding	BTG1	chromosome:C_jacchus3.2.1:9:1:124281992:1	76100521	76106036	D	Protein BTG1 {ECO:0000313|EMBL:JAB09594.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036225}  [Source:UniProtKB/TrEMBL;Acc:F7FQE8]
ENSCJAG00000019507	NOVEL	pseudogene	ENSCJAG00000019507	chromosome:C_jacchus3.2.1:9:1:124281992:1	75831255	75831620	R	<no descrition>
ENSCJAG00000011082	NOVEL	protein_coding	RAG1	chromosome:C_jacchus3.2.1:11:1:130397257:1	99857897	99869593	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020439}  [Source:UniProtKB/TrEMBL;Acc:F7ERX5]
ENSCJAG00000016520	NOVEL	pseudogene	ENSCJAG00000016520	chromosome:C_jacchus3.2.1:1:1:210400635:1	146576004	146577365	R	<no descrition>
ENSCJAG00000011070	KNOWN	protein_coding	TRAF6	chromosome:C_jacchus3.2.1:11:1:130397257:1	99778844	99800403	R	TNF receptor-associated factor 6 {ECO:0000313|EMBL:JAB08622.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020431}  [Source:UniProtKB/TrEMBL;Acc:F7ES31]
ENSCJAG00000014341	KNOWN	protein_coding	NDEL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	73385095	73416458	R	Nuclear distribution protein nudE-like 1 isoform A {ECO:0000313|EMBL:JAB04393.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026397}  [Source:UniProtKB/TrEMBL;Acc:F7I4N9]
ENSCJAG00000013971	KNOWN_BY_PROJECTION	protein_coding	AFP	chromosome:C_jacchus3.2.1:3:1:190850796:1	121229215	121254078	R	alpha-fetoprotein [Source:HGNC Symbol;Acc:HGNC:317]
ENSCJAG00000016490	KNOWN_BY_PROJECTION	protein_coding	CYLC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	146283852	146291193	D	cylicin, basic protein of sperm head cytoskeleton 2 [Source:HGNC Symbol;Acc:HGNC:2583]
ENSCJAG00000001217	KNOWN	protein_coding	AP4E1	chromosome:C_jacchus3.2.1:10:1:132174527:1	28020518	28122642	D	AP-4 complex subunit epsilon-1 isoform 1 {ECO:0000313|EMBL:JAB35830.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002206}  [Source:UniProtKB/TrEMBL;Acc:F7HXS2]
ENSCJAG00000033290	NOVEL	pseudogene	ENSCJAG00000033290	chromosome:C_jacchus3.2.1:1:1:210400635:1	144845018	144846028	R	<no descrition>
ENSCJAG00000019504	KNOWN_BY_PROJECTION	protein_coding	CLLU1OS	chromosome:C_jacchus3.2.1:9:1:124281992:1	75828057	75836142	D	chronic lymphocytic leukemia up-regulated 1 opposite strand [Source:HGNC Symbol;Acc:HGNC:24070]
ENSCJAG00000019503	KNOWN_BY_PROJECTION	protein_coding	C12orf74	chromosome:C_jacchus3.2.1:9:1:124281992:1	75558162	75559625	R	chromosome 12 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:27887]
ENSCJAG00000019670	KNOWN_BY_PROJECTION	protein_coding	FEZF2	chromosome:C_jacchus3.2.1:15:1:98464013:1	38517920	38520972	R	FEZ family zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:13506]
ENSCJAG00000011056	KNOWN	protein_coding	PRR5L	chromosome:C_jacchus3.2.1:11:1:130397257:1	99579998	99756830	D	Proline-rich protein 5-like isoform a {ECO:0000313|EMBL:JAB09063.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020416}  [Source:UniProtKB/TrEMBL;Acc:F7F5F5]
ENSCJAG00000019678	KNOWN_BY_PROJECTION	protein_coding	C3orf14	chromosome:C_jacchus3.2.1:15:1:98464013:1	38469695	38484177	D	chromosome 3 open reading frame 14 [Source:HGNC Symbol;Acc:HGNC:25024]
ENSCJAG00000016031	KNOWN_BY_PROJECTION	protein_coding	PXT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	37380699	37391884	R	peroxisomal, testis specific 1 [Source:HGNC Symbol;Acc:HGNC:18312]
ENSCJAG00000005202	KNOWN	protein_coding	SGMS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	73627952	73968072	R	Phosphatidylcholine:ceramide cholinephosphotransferase 1 {ECO:0000313|EMBL:JAB02706.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009520}  [Source:UniProtKB/TrEMBL;Acc:F7D565]
ENSCJAG00000018661	KNOWN	protein_coding	RASSF5	chromosome:C_jacchus3.2.1:19:1:49578535:1	28571810	28656522	D	Ras association domain-containing protein 5 isoform A {ECO:0000313|EMBL:JAB30717.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034688}  [Source:UniProtKB/TrEMBL;Acc:F7IMG6]
ENSCJAG00000001259	KNOWN_BY_PROJECTION	protein_coding	ZNF680	chromosome:C_jacchus3.2.1:10:1:132174527:1	27937710	27940105	R	zinc finger protein 680 [Source:HGNC Symbol;Acc:HGNC:26897]
ENSCJAG00000016001	KNOWN_BY_PROJECTION	protein_coding	C6orf222	chromosome:C_jacchus3.2.1:4:1:171630274:1	37289298	37304515	R	chromosome 6 open reading frame 222 [Source:HGNC Symbol;Acc:HGNC:33769]
ENSCJAG00000019495	KNOWN	protein_coding	PLEKHG7	chromosome:C_jacchus3.2.1:9:1:124281992:1	75496223	75530631	R	Pleckstrin homology domain-containing family G member 7 {ECO:0000313|EMBL:JAB16476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036207}  [Source:UniProtKB/TrEMBL;Acc:F7GER5]
ENSCJAG00000019680	KNOWN	protein_coding	PTPRG	chromosome:C_jacchus3.2.1:15:1:98464013:1	38120791	38436900	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036598}  [Source:UniProtKB/TrEMBL;Acc:F7EW42]
ENSCJAG00000011032	KNOWN	protein_coding	COMMD9	chromosome:C_jacchus3.2.1:11:1:130397257:1	99552324	99567870	R	COMM domain-containing protein 9 isoform 1 {ECO:0000313|EMBL:JAB09236.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020382}  [Source:UniProtKB/TrEMBL;Acc:F7G9U0]
ENSCJAG00000013963	KNOWN_BY_PROJECTION	protein_coding	AFM	chromosome:C_jacchus3.2.1:3:1:190850796:1	121181092	121203408	R	afamin [Source:HGNC Symbol;Acc:HGNC:316]
ENSCJAG00000016471	KNOWN_BY_PROJECTION	protein_coding	GRIN3A	chromosome:C_jacchus3.2.1:1:1:210400635:1	144825046	144999019	R	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A [Source:HGNC Symbol;Acc:HGNC:16767]
ENSCJAG00000037586	NOVEL	pseudogene	ENSCJAG00000037586	chromosome:C_jacchus3.2.1:9:1:124281992:1	75494303	75495810	D	<no descrition>
ENSCJAG00000015959	KNOWN	protein_coding	SETD5	chromosome:C_jacchus3.2.1:15:1:98464013:1	61359139	61411274	D	SET domain-containing protein 5 {ECO:0000313|EMBL:JAB09901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029469}  [Source:UniProtKB/TrEMBL;Acc:F7IRI8]
ENSCJAG00000002810	KNOWN	protein_coding	NR2C1	chromosome:C_jacchus3.2.1:9:1:124281992:1	85044026	85099630	R	Nuclear receptor subfamily 2 group C member 1 isoform a {ECO:0000313|EMBL:JAB02811.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005162}  [Source:UniProtKB/TrEMBL;Acc:F7IF23]
ENSCJAG00000017337	NOVEL	protein_coding	ENSCJAG00000017337	chromosome:C_jacchus3.2.1:1:1:210400635:1	153851851	154025463	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031918}  [Source:UniProtKB/TrEMBL;Acc:F7I0I8]
ENSCJAG00000015137	NOVEL	protein_coding	ENSCJAG00000015137	chromosome:C_jacchus3.2.1:5:1:159171411:1	74277220	74287076	R	<no descrition>
ENSCJAG00000015956	NOVEL	pseudogene	ENSCJAG00000015956	chromosome:C_jacchus3.2.1:15:1:98464013:1	61328032	61328542	R	<no descrition>
ENSCJAG00000011031	NOVEL	pseudogene	ENSCJAG00000011031	chromosome:C_jacchus3.2.1:11:1:130397257:1	99540131	99540476	R	<no descrition>
ENSCJAG00000013949	KNOWN_BY_PROJECTION	protein_coding	RASSF6	chromosome:C_jacchus3.2.1:3:1:190850796:1	121057699	121107921	D	Ras association (RalGDS/AF-6) domain family member 6 [Source:HGNC Symbol;Acc:HGNC:20796]
ENSCJAG00000011017	KNOWN	protein_coding	LDLRAD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	99195902	99495915	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047745}  [Source:UniProtKB/TrEMBL;Acc:F7EG44]
ENSCJAG00000011012	NOVEL	protein_coding	ENSCJAG00000011012	chromosome:C_jacchus3.2.1:11:1:130397257:1	99112158	99113443	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020319}  [Source:UniProtKB/TrEMBL;Acc:F7H6W1]
ENSCJAG00000013945	KNOWN_BY_PROJECTION	protein_coding	CXCL8	chromosome:C_jacchus3.2.1:3:1:190850796:1	120935477	120938673	R	chemokine (C-X-C motif) ligand 8 [Source:HGNC Symbol;Acc:HGNC:6025]
ENSCJAG00000011000	KNOWN	protein_coding	TRIM44	chromosome:C_jacchus3.2.1:11:1:130397257:1	98911794	99057116	D	Tripartite motif-containing protein 44 {ECO:0000313|EMBL:JAB07462.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020314}  [Source:UniProtKB/TrEMBL;Acc:F7H6Y0]
ENSCJAG00000018679	KNOWN	protein_coding	IKBKE	chromosome:C_jacchus3.2.1:19:1:49578535:1	28534276	28561769	D	Inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform 1 {ECO:0000313|EMBL:JAB06137.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034737}  [Source:UniProtKB/TrEMBL;Acc:F7IAP3]
ENSCJAG00000010998	KNOWN_BY_PROJECTION	protein_coding	FJX1	chromosome:C_jacchus3.2.1:11:1:130397257:1	98865363	98867234	D	four jointed box 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17166]
ENSCJAG00000019707	NOVEL	pseudogene	ENSCJAG00000019707	chromosome:C_jacchus3.2.1:15:1:98464013:1	36807488	36807908	R	<no descrition>
ENSCJAG00000019708	KNOWN	protein_coding	FHIT	chromosome:C_jacchus3.2.1:15:1:98464013:1	35820678	36094275	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036607}  [Source:UniProtKB/TrEMBL;Acc:F6PZ14]
ENSCJAG00000008586	KNOWN	protein_coding	EHBP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	44116099	44509256	R	EH domain-binding protein 1 isoform 1 {ECO:0000313|EMBL:JAB22471.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015959}  [Source:UniProtKB/TrEMBL;Acc:F7DS55]
ENSCJAG00000005129	NOVEL	protein_coding	ENSCJAG00000005129	chromosome:C_jacchus3.2.1:12:1:121768101:1	73516099	73581706	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009485}  [Source:UniProtKB/TrEMBL;Acc:F7EVB3]
ENSCJAG00000016354	KNOWN_BY_PROJECTION	protein_coding	RNF20	chromosome:C_jacchus3.2.1:1:1:210400635:1	144792620	144818109	D	ring finger protein 20, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:10062]
ENSCJAG00000019711	KNOWN_BY_PROJECTION	protein_coding	C3orf67	chromosome:C_jacchus3.2.1:15:1:98464013:1	34785585	35103087	R	chromosome 3 open reading frame 67 [Source:HGNC Symbol;Acc:HGNC:24763]
ENSCJAG00000013938	KNOWN_BY_PROJECTION	protein_coding	CXCL6	chromosome:C_jacchus3.2.1:3:1:190850796:1	120846374	120848599	R	chemokine (C-X-C motif) ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643]
ENSCJAG00000016348	KNOWN	protein_coding	TMEM246	chromosome:C_jacchus3.2.1:1:1:210400635:1	144716395	144790817	R	Transmembrane protein 246 {ECO:0000313|EMBL:JAB01606.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030086}  [Source:UniProtKB/TrEMBL;Acc:F6RHH0]
ENSCJAG00000013935	NOVEL	protein_coding	ENSCJAG00000013935	chromosome:C_jacchus3.2.1:3:1:190850796:1	120830713	120832263	R	C-X-C motif chemokine {ECO:0000256|RuleBase:RU361149}  [Source:UniProtKB/TrEMBL;Acc:F7CSR8]
ENSCJAG00000019719	KNOWN_BY_PROJECTION	protein_coding	FAM3D	chromosome:C_jacchus3.2.1:15:1:98464013:1	34678226	34699884	R	family with sequence similarity 3, member D [Source:HGNC Symbol;Acc:HGNC:18665]
ENSCJAG00000015985	KNOWN_BY_PROJECTION	protein_coding	PNPLA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	37238208	37280186	D	patatin-like phospholipase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21246]
ENSCJAG00000019725	KNOWN	protein_coding	FAM107A	chromosome:C_jacchus3.2.1:15:1:98464013:1	34616212	34619165	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036652}  [Source:UniProtKB/TrEMBL;Acc:F6TLF6]
ENSCJAG00000010977	KNOWN_BY_PROJECTION	protein_coding	PAMR1	chromosome:C_jacchus3.2.1:11:1:130397257:1	98658449	98771046	R	peptidase domain containing associated with muscle regeneration 1 [Source:HGNC Symbol;Acc:HGNC:24554]
ENSCJAG00000008576	KNOWN	protein_coding	OTX1	chromosome:C_jacchus3.2.1:14:1:108792865:1	44104205	44111288	R	Homeobox protein OTX1 {ECO:0000313|EMBL:JAB25380.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015810}  [Source:UniProtKB/TrEMBL;Acc:F7GYY5]
ENSCJAG00000019460	KNOWN	protein_coding	EEA1	chromosome:C_jacchus3.2.1:9:1:124281992:1	75340570	75495815	D	Early endosome antigen 1 {ECO:0000313|EMBL:JAB09303.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036196}  [Source:UniProtKB/TrEMBL;Acc:F7H3G1]
ENSCJAG00000007061	KNOWN_BY_PROJECTION	protein_coding	WDPCP	chromosome:C_jacchus3.2.1:14:1:108792865:1	43461951	43710335	D	WD repeat containing planar cell polarity effector [Source:HGNC Symbol;Acc:HGNC:28027]
ENSCJAG00000014308	KNOWN	protein_coding	MYH10	chromosome:C_jacchus3.2.1:5:1:159171411:1	73222277	73378359	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026354}  [Source:UniProtKB/TrEMBL;Acc:F7I9F4]
ENSCJAG00000013925	NOVEL	protein_coding	ENSCJAG00000013925	chromosome:C_jacchus3.2.1:3:1:190850796:1	120814492	120816712	R	C-X-C motif chemokine {ECO:0000256|RuleBase:RU361149}  [Source:UniProtKB/TrEMBL;Acc:F6VZ29]
ENSCJAG00000019458	KNOWN_BY_PROJECTION	protein_coding	ALX1	chromosome:C_jacchus3.2.1:9:1:124281992:1	75055241	75076725	D	ALX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:1494]
ENSCJAG00000019727	KNOWN_BY_PROJECTION	protein_coding	ACOX2	chromosome:C_jacchus3.2.1:15:1:98464013:1	34549777	34586236	R	acyl-CoA oxidase 2, branched chain [Source:HGNC Symbol;Acc:HGNC:120]
ENSCJAG00000007018	KNOWN	protein_coding	MDH1	chromosome:C_jacchus3.2.1:14:1:108792865:1	43442213	43461377	R	Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}  [Source:UniProtKB/TrEMBL;Acc:F6YJ68]
ENSCJAG00000013922	KNOWN	protein_coding	PF4	chromosome:C_jacchus3.2.1:3:1:190850796:1	120710445	120711203	D	C-X-C motif chemokine {ECO:0000256|RuleBase:RU361149}  [Source:UniProtKB/TrEMBL;Acc:F6WJ19]
ENSCJAG00000019445	KNOWN_BY_PROJECTION	protein_coding	LRRIQ1	chromosome:C_jacchus3.2.1:9:1:124281992:1	74825943	74859743	D	leucine-rich repeats and IQ motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25708]
ENSCJAG00000032662	NOVEL	pseudogene	ENSCJAG00000032662	chromosome:C_jacchus3.2.1:9:1:124281992:1	74736419	74737059	R	<no descrition>
ENSCJAG00000016312	KNOWN_BY_PROJECTION	protein_coding	ALDOB	chromosome:C_jacchus3.2.1:1:1:210400635:1	144596432	144612246	R	aldolase B, fructose-bisphosphate [Source:HGNC Symbol;Acc:HGNC:417]
ENSCJAG00000019737	KNOWN	protein_coding	KCTD6	chromosome:C_jacchus3.2.1:15:1:98464013:1	34541855	34547259	D	BTB/POZ domain-containing protein KCTD6 {ECO:0000313|EMBL:JAB03144.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036671}  [Source:UniProtKB/TrEMBL;Acc:F6TAC4]
ENSCJAG00000013918	KNOWN	protein_coding	PPBP	chromosome:C_jacchus3.2.1:3:1:190850796:1	120704795	120705941	D	C-X-C motif chemokine {ECO:0000256|RuleBase:RU361149}  [Source:UniProtKB/TrEMBL;Acc:F6WJ66]
ENSCJAG00000019739	KNOWN_BY_PROJECTION	protein_coding	PDHB	chromosome:C_jacchus3.2.1:15:1:98464013:1	34477565	34484256	R	pyruvate dehydrogenase (lipoamide) beta [Source:HGNC Symbol;Acc:HGNC:8808]
ENSCJAG00000019744	KNOWN_BY_PROJECTION	protein_coding	PXK	chromosome:C_jacchus3.2.1:15:1:98464013:1	34413834	34475606	D	PX domain containing serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:23326]
ENSCJAG00000001267	KNOWN	protein_coding	SPPL2A	chromosome:C_jacchus3.2.1:10:1:132174527:1	27790219	27843469	R	Signal peptide peptidase-like 2A {ECO:0000313|EMBL:JAB04362.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002295}  [Source:UniProtKB/TrEMBL;Acc:F7ITD1]
ENSCJAG00000005045	KNOWN_BY_PROJECTION	protein_coding	A1CF	chromosome:C_jacchus3.2.1:12:1:121768101:1	73391215	73466781	D	APOBEC1 complementation factor [Source:HGNC Symbol;Acc:HGNC:24086]
ENSCJAG00000010952	KNOWN_BY_PROJECTION	protein_coding	SLC1A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	98485976	98644004	R	solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
ENSCJAG00000018255	KNOWN_BY_PROJECTION	protein_coding	CCDC42	chromosome:C_jacchus3.2.1:5:1:159171411:1	73102917	73118078	D	coiled-coil domain containing 42 [Source:HGNC Symbol;Acc:HGNC:26528]
ENSCJAG00000019749	KNOWN	protein_coding	RPP14	chromosome:C_jacchus3.2.1:15:1:98464013:1	34355781	34366535	D	Ribonuclease P protein subunit p14 {ECO:0000313|EMBL:JAB07475.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036713}  [Source:UniProtKB/TrEMBL;Acc:F6RR62]
ENSCJAG00000018266	KNOWN_BY_PROJECTION	protein_coding	MFSD6L	chromosome:C_jacchus3.2.1:5:1:159171411:1	73050789	73052538	D	major facilitator superfamily domain containing 6-like [Source:HGNC Symbol;Acc:HGNC:26656]
ENSCJAG00000006960	KNOWN	protein_coding	UGP2	chromosome:C_jacchus3.2.1:14:1:108792865:1	43086773	43150161	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012985}  [Source:UniProtKB/TrEMBL;Acc:F6QUV0]
ENSCJAG00000005042	NOVEL	protein_coding	ENSCJAG00000005042	chromosome:C_jacchus3.2.1:12:1:121768101:1	72951548	72952352	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009188}  [Source:UniProtKB/TrEMBL;Acc:F7IKD0]
ENSCJAG00000018264	KNOWN_BY_PROJECTION	protein_coding	SPDYE4	chromosome:C_jacchus3.2.1:5:1:159171411:1	73089602	73097378	D	speedy/RINGO cell cycle regulator family member E4 [Source:HGNC Symbol;Acc:HGNC:35463]
ENSCJAG00000013911	KNOWN_BY_PROJECTION	protein_coding	CXCL5	chromosome:C_jacchus3.2.1:3:1:190850796:1	120694448	120696821	D	chemokine (C-X-C motif) ligand 5 [Source:HGNC Symbol;Acc:HGNC:10642]
ENSCJAG00000002846	KNOWN	protein_coding	NDUFA12	chromosome:C_jacchus3.2.1:9:1:124281992:1	85028871	85034703	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005169}  [Source:UniProtKB/TrEMBL;Acc:F7IF18]
ENSCJAG00000002847	NOVEL	pseudogene	ENSCJAG00000002847	chromosome:C_jacchus3.2.1:9:1:124281992:1	84715226	84715968	R	<no descrition>
ENSCJAG00000015949	NOVEL	protein_coding	ENSCJAG00000015949	chromosome:C_jacchus3.2.1:15:1:98464013:1	61293907	61316281	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029375}  [Source:UniProtKB/TrEMBL;Acc:F7I5F1]
ENSCJAG00000017329	KNOWN_BY_PROJECTION	protein_coding	TXNDC8	chromosome:C_jacchus3.2.1:1:1:210400635:1	153777392	153817528	R	thioredoxin domain containing 8 (spermatozoa) [Source:HGNC Symbol;Acc:HGNC:31454]
ENSCJAG00000008495	KNOWN_BY_PROJECTION	protein_coding	CPEB3	chromosome:C_jacchus3.2.1:12:1:121768101:1	78904164	79148725	R	cytoplasmic polyadenylation element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:21746]
ENSCJAG00000018739	KNOWN_BY_PROJECTION	protein_coding	ZNF692	chromosome:C_jacchus3.2.1:19:1:49578535:1	32125196	32134567	D	zinc finger protein 692 [Source:HGNC Symbol;Acc:HGNC:26049]
ENSCJAG00000016305	KNOWN	protein_coding	ZNF189	chromosome:C_jacchus3.2.1:1:1:210400635:1	144567415	144580792	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030004}; Zinc finger protein 189 isoform 1 {ECO:0000313|EMBL:JAB10293.1}  [Source:UniProtKB/TrEMBL;Acc:F6SES3]
ENSCJAG00000013423	NOVEL	protein_coding	ENSCJAG00000013423	chromosome:C_jacchus3.2.1:12:1:121768101:1	72690763	72691541	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046405}  [Source:UniProtKB/TrEMBL;Acc:F7HN94]
ENSCJAG00000005033	KNOWN_BY_PROJECTION	protein_coding	CSTF2T	chromosome:C_jacchus3.2.1:12:1:121768101:1	72551560	72553369	D	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant [Source:HGNC Symbol;Acc:HGNC:17086]
ENSCJAG00000019753	KNOWN	protein_coding	ABHD6	chromosome:C_jacchus3.2.1:15:1:98464013:1	34293413	34344430	D	Monoacylglycerol lipase ABHD6 {ECO:0000313|EMBL:JAB02870.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036731}  [Source:UniProtKB/TrEMBL;Acc:F6R5U3]
ENSCJAG00000016300	KNOWN	protein_coding	MRPL50	chromosome:C_jacchus3.2.1:1:1:210400635:1	144558375	144567171	R	39S ribosomal protein L50, mitochondrial {ECO:0000313|EMBL:JAB22926.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029993}  [Source:UniProtKB/TrEMBL;Acc:F7I2I7]
ENSCJAG00000016292	KNOWN_BY_PROJECTION	protein_coding	BAAT	chromosome:C_jacchus3.2.1:1:1:210400635:1	144524299	144533675	R	bile acid CoA:amino acid N-acyltransferase [Source:HGNC Symbol;Acc:HGNC:932]
ENSCJAG00000005021	KNOWN	protein_coding	PRKG1	chromosome:C_jacchus3.2.1:12:1:121768101:1	71873445	72435875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009168}  [Source:UniProtKB/TrEMBL;Acc:F7IMU1]
ENSCJAG00000035014	NOVEL	protein_coding	ENSCJAG00000035014	chromosome:C_jacchus3.2.1:1:1:210400635:1	144501180	144505805	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051881}  [Source:UniProtKB/TrEMBL;Acc:F6VEI0]
ENSCJAG00000011955	NOVEL	protein_coding	ENSCJAG00000011955	chromosome:C_jacchus3.2.1:15:1:98464013:1	34278673	34279580	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021952}  [Source:UniProtKB/TrEMBL;Acc:F6TNV3]
ENSCJAG00000018268	KNOWN_BY_PROJECTION	protein_coding	PIK3R6	chromosome:C_jacchus3.2.1:5:1:159171411:1	72965679	73034582	D	phosphoinositide-3-kinase, regulatory subunit 6 [Source:HGNC Symbol;Acc:HGNC:27101]
ENSCJAG00000016264	KNOWN	protein_coding	ENSCJAG00000016264	chromosome:C_jacchus3.2.1:1:1:210400635:1	144203270	144492243	D	Lipid phosphate phosphatase-related protein type 1 {ECO:0000313|EMBL:JAB13233.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029978}  [Source:UniProtKB/TrEMBL;Acc:F7I2M9]
ENSCJAG00000013908	KNOWN	protein_coding	ENSCJAG00000013908	chromosome:C_jacchus3.2.1:3:1:190850796:1	120633779	120659367	D	C-X-C motif chemokine {ECO:0000256|RuleBase:RU361149}  [Source:UniProtKB/TrEMBL;Acc:F6Q2P8]
ENSCJAG00000019760	KNOWN_BY_PROJECTION	protein_coding	DNASE1L3	chromosome:C_jacchus3.2.1:15:1:98464013:1	34243585	34268690	R	deoxyribonuclease I-like 3 [Source:HGNC Symbol;Acc:HGNC:2959]
ENSCJAG00000034446	NOVEL	pseudogene	ENSCJAG00000034446	chromosome:C_jacchus3.2.1:1:1:210400635:1	143879000	143880100	D	<no descrition>
ENSCJAG00000013891	NOVEL	pseudogene	ENSCJAG00000013891	chromosome:C_jacchus3.2.1:3:1:190850796:1	120609826	120610915	D	<no descrition>
ENSCJAG00000011496	KNOWN_BY_PROJECTION	protein_coding	MURC	chromosome:C_jacchus3.2.1:1:1:210400635:1	143694072	143702712	D	muscle-related coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:33742]
ENSCJAG00000013883	KNOWN	protein_coding	MTHFD2L	chromosome:C_jacchus3.2.1:3:1:190850796:1	120432170	120595066	R	Probable bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2 NAD-dependent methylenetetrahydrofolate dehydrogenase Methenyltetrahydrofolate cyclohydrolase [Source:UniProtKB/Swiss-Prot;Acc:F6ZFR0]
ENSCJAG00000011484	KNOWN	protein_coding	MSANTD3-TMEFF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	143561407	143693618	D	Myb/SANT-like DNA-binding domain-containing protein 3 isoform a {ECO:0000313|EMBL:JAB10986.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021102}  [Source:UniProtKB/TrEMBL;Acc:F6T7T3]
ENSCJAG00000016011	KNOWN_BY_PROJECTION	protein_coding	ETV7	chromosome:C_jacchus3.2.1:4:1:171630274:1	37230571	37377847	R	ets variant 7 [Source:HGNC Symbol;Acc:HGNC:18160]
ENSCJAG00000019425	KNOWN_BY_PROJECTION	protein_coding	SLC6A15	chromosome:C_jacchus3.2.1:9:1:124281992:1	74616308	74680494	R	solute carrier family 6 (neutral amino acid transporter), member 15 [Source:HGNC Symbol;Acc:HGNC:13621]
ENSCJAG00000018702	NOVEL	protein_coding	ENSCJAG00000018702	chromosome:C_jacchus3.2.1:19:1:49578535:1	28251422	28528712	D	<no descrition>
ENSCJAG00000019424	NOVEL	pseudogene	ENSCJAG00000019424	chromosome:C_jacchus3.2.1:9:1:124281992:1	73183036	73184122	R	<no descrition>
ENSCJAG00000005008	KNOWN	protein_coding	DKK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	71848975	71852495	R	Callithrix jacchus dickkopf 1 homolog (Xenopus laevis) (DKK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001260481]
ENSCJAG00000005002	KNOWN_BY_PROJECTION	protein_coding	MBL2	chromosome:C_jacchus3.2.1:12:1:121768101:1	71409812	71413775	D	mannose-binding lectin (protein C) 2, soluble [Source:HGNC Symbol;Acc:HGNC:6922]
ENSCJAG00000031564	NOVEL	pseudogene	ENSCJAG00000031564	chromosome:C_jacchus3.2.1:12:1:121768101:1	70796658	70797616	D	<no descrition>
ENSCJAG00000010912	KNOWN	protein_coding	CD44	chromosome:C_jacchus3.2.1:11:1:130397257:1	98362125	98455163	D	CD44 antigen isoform 7 {ECO:0000313|EMBL:JAB38202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020176}  [Source:UniProtKB/TrEMBL;Acc:F7GB35]
ENSCJAG00000019420	KNOWN	protein_coding	TMTC2	chromosome:C_jacchus3.2.1:9:1:124281992:1	72538299	72971262	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036055}  [Source:UniProtKB/TrEMBL;Acc:F7G378]
ENSCJAG00000006914	KNOWN_BY_PROJECTION	protein_coding	VPS54	chromosome:C_jacchus3.2.1:14:1:108792865:1	42959099	43084911	D	vacuolar protein sorting 54 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18652]
ENSCJAG00000018755	NOVEL	protein_coding	ENSCJAG00000018755	chromosome:C_jacchus3.2.1:19:1:49578535:1	28230981	28248205	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034833}  [Source:UniProtKB/TrEMBL;Acc:F7HML8]
ENSCJAG00000033600	NOVEL	protein_coding	ENSCJAG00000033600	chromosome:C_jacchus3.2.1:12:1:121768101:1	70383501	70435945	D	<no descrition>
ENSCJAG00000018758	KNOWN_BY_PROJECTION	protein_coding	AVPR1B	chromosome:C_jacchus3.2.1:19:1:49578535:1	28141335	28149743	R	arginine vasopressin receptor 1B [Source:HGNC Symbol;Acc:HGNC:896]
ENSCJAG00000018766	KNOWN_BY_PROJECTION	protein_coding	C1orf186	chromosome:C_jacchus3.2.1:19:1:49578535:1	28128226	28132955	D	chromosome 1 open reading frame 186 [Source:HGNC Symbol;Acc:HGNC:25341]
ENSCJAG00000019409	NOVEL	protein_coding	ENSCJAG00000019409	chromosome:C_jacchus3.2.1:9:1:124281992:1	72501331	72502944	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036047}  [Source:UniProtKB/TrEMBL;Acc:F7GF93]
ENSCJAG00000019408	NOVEL	pseudogene	ENSCJAG00000019408	chromosome:C_jacchus3.2.1:9:1:124281992:1	72290884	72291439	R	<no descrition>
ENSCJAG00000018276	KNOWN_BY_PROJECTION	protein_coding	PIK3R5	chromosome:C_jacchus3.2.1:5:1:159171411:1	72842771	72927760	D	phosphoinositide-3-kinase, regulatory subunit 5 [Source:HGNC Symbol;Acc:HGNC:30035]
ENSCJAG00000013872	KNOWN_BY_PROJECTION	protein_coding	EPGN	chromosome:C_jacchus3.2.1:3:1:190850796:1	120418211	120425573	R	epithelial mitogen [Source:HGNC Symbol;Acc:HGNC:17470]
ENSCJAG00000001322	KNOWN_BY_PROJECTION	protein_coding	TRPM7	chromosome:C_jacchus3.2.1:10:1:132174527:1	27646101	27740269	R	transient receptor potential cation channel, subfamily M, member 7 [Source:HGNC Symbol;Acc:HGNC:17994]
ENSCJAG00000013863	KNOWN_BY_PROJECTION	protein_coding	EREG	chromosome:C_jacchus3.2.1:3:1:190850796:1	120350646	120372406	R	epiregulin [Source:HGNC Symbol;Acc:HGNC:3443]
ENSCJAG00000018321	KNOWN_BY_PROJECTION	protein_coding	NTN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	72622688	72781819	R	netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
ENSCJAG00000010888	KNOWN_BY_PROJECTION	protein_coding	PDHX	chromosome:C_jacchus3.2.1:11:1:130397257:1	98135508	98215992	D	pyruvate dehydrogenase complex, component X [Source:HGNC Symbol;Acc:HGNC:21350]
ENSCJAG00000004978	NOVEL	protein_coding	ENSCJAG00000004978	chromosome:C_jacchus3.2.1:12:1:121768101:1	69339106	70319789	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009119}  [Source:UniProtKB/TrEMBL;Acc:F7HNR7]
ENSCJAG00000012613	KNOWN	protein_coding	STX8	chromosome:C_jacchus3.2.1:5:1:159171411:1	72251709	72574729	D	Syntaxin-8 {ECO:0000313|EMBL:JAB10056.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023160}  [Source:UniProtKB/TrEMBL;Acc:F7HX57]
ENSCJAG00000019764	KNOWN	protein_coding	FLNB	chromosome:C_jacchus3.2.1:15:1:98464013:1	34054287	34225426	D	Filamin-B isoform 1 {ECO:0000313|EMBL:JAB08764.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036923}  [Source:UniProtKB/TrEMBL;Acc:F6R465]
ENSCJAG00000018771	KNOWN_BY_PROJECTION	protein_coding	CTSE	chromosome:C_jacchus3.2.1:19:1:49578535:1	28031088	28053942	R	cathepsin E [Source:HGNC Symbol;Acc:HGNC:2530]
ENSCJAG00000006889	KNOWN	protein_coding	PELI1	chromosome:C_jacchus3.2.1:14:1:108792865:1	42821574	42882756	D	E3 ubiquitin-protein ligase pellino homolog 1 {ECO:0000313|EMBL:JAB09127.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045444}  [Source:UniProtKB/TrEMBL;Acc:F6QQB0]
ENSCJAG00000035068	NOVEL	pseudogene	ENSCJAG00000035068	chromosome:C_jacchus3.2.1:12:1:121768101:1	68513624	68514389	D	<no descrition>
ENSCJAG00000015944	NOVEL	protein_coding	ENSCJAG00000015944	chromosome:C_jacchus3.2.1:15:1:98464013:1	61274405	61275167	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029361}  [Source:UniProtKB/TrEMBL;Acc:F7I7R4]
ENSCJAG00000035187	NOVEL	protein_coding	ENSCJAG00000035187	chromosome:C_jacchus3.2.1:15:1:98464013:1	60950054	60951758	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044861}  [Source:UniProtKB/TrEMBL;Acc:F7HGJ1]
ENSCJAG00000002858	NOVEL	pseudogene	ENSCJAG00000002858	chromosome:C_jacchus3.2.1:9:1:124281992:1	84603764	84604064	D	<no descrition>
ENSCJAG00000002849	KNOWN	protein_coding	TMCC3	chromosome:C_jacchus3.2.1:9:1:124281992:1	84580144	84663718	R	Transmembrane and coiled-coil domains protein 3 {ECO:0000313|EMBL:JAB37803.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005189}  [Source:UniProtKB/TrEMBL;Acc:F7ICJ2]
ENSCJAG00000015927	KNOWN_BY_PROJECTION	protein_coding	SRGAP3	chromosome:C_jacchus3.2.1:15:1:98464013:1	60917590	61014511	R	SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:19744]
ENSCJAG00000017321	KNOWN	protein_coding	TXN	chromosome:C_jacchus3.2.1:1:1:210400635:1	153729184	153742179	R	Thioredoxin  [Source:UniProtKB/Swiss-Prot;Acc:Q9BDJ3]
ENSCJAG00000019400	KNOWN_BY_PROJECTION	protein_coding	METTL25	chromosome:C_jacchus3.2.1:9:1:124281992:1	72190416	72316972	D	methyltransferase like 25 [Source:HGNC Symbol;Acc:HGNC:26228]
ENSCJAG00000006887	NOVEL	pseudogene	ENSCJAG00000006887	chromosome:C_jacchus3.2.1:14:1:108792865:1	42634374	42635055	R	<no descrition>
ENSCJAG00000006885	NOVEL	protein_coding	ENSCJAG00000006885	chromosome:C_jacchus3.2.1:14:1:108792865:1	42557918	42558993	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012744}  [Source:UniProtKB/TrEMBL;Acc:F6S2A5]
ENSCJAG00000033855	NOVEL	protein_coding	ENSCJAG00000033855	chromosome:C_jacchus3.2.1:12:1:121768101:1	68177828	68179011	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044225}  [Source:UniProtKB/TrEMBL;Acc:F7E1C1]
ENSCJAG00000004973	NOVEL	pseudogene	ENSCJAG00000004973	chromosome:C_jacchus3.2.1:12:1:121768101:1	67958930	67959688	D	<no descrition>
ENSCJAG00000011446	KNOWN	protein_coding	TEX10	chromosome:C_jacchus3.2.1:1:1:210400635:1	143415491	143465208	R	Testis-expressed sequence 10 protein isoform 1 {ECO:0000313|EMBL:JAB13879.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021099}  [Source:UniProtKB/TrEMBL;Acc:F6TJ63]
ENSCJAG00000019396	KNOWN_BY_PROJECTION	protein_coding	CCDC59	chromosome:C_jacchus3.2.1:9:1:124281992:1	72180728	72190337	R	coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
ENSCJAG00000006878	KNOWN	protein_coding	LGALSL	chromosome:C_jacchus3.2.1:14:1:108792865:1	42493619	42498275	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F6S2C8]
ENSCJAG00000004962	KNOWN_BY_PROJECTION	protein_coding	SEPT4	chromosome:C_jacchus3.2.1:12:1:121768101:1	67923970	67926064	R	septin 4 [Source:HGNC Symbol;Acc:HGNC:9165]
ENSCJAG00000006868	NOVEL	protein_coding	ENSCJAG00000006868	chromosome:C_jacchus3.2.1:14:1:108792865:1	42361029	42398709	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012726}  [Source:UniProtKB/TrEMBL;Acc:F6S3M1]
ENSCJAG00000011074	KNOWN_BY_PROJECTION	protein_coding	SLC26A9	chromosome:C_jacchus3.2.1:19:1:49578535:1	27963421	27984419	R	solute carrier family 26 (anion exchanger), member 9 [Source:HGNC Symbol;Acc:HGNC:14469]
ENSCJAG00000013848	KNOWN	protein_coding	AREG	chromosome:C_jacchus3.2.1:3:1:190850796:1	120279877	120289537	R	Amphiregulin preproprotein {ECO:0000313|EMBL:JAB05895.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025471}  [Source:UniProtKB/TrEMBL;Acc:F7CDA4]
ENSCJAG00000015955	KNOWN_BY_PROJECTION	protein_coding	BRPF3	chromosome:C_jacchus3.2.1:4:1:171630274:1	37166228	37199171	D	bromodomain and PHD finger containing, 3 [Source:HGNC Symbol;Acc:HGNC:14256]
ENSCJAG00000019979	KNOWN	protein_coding	BTC	chromosome:C_jacchus3.2.1:3:1:190850796:1	119954134	119999129	D	Probetacellulin {ECO:0000313|EMBL:JAB05095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037158}  [Source:UniProtKB/TrEMBL;Acc:F7B288]
ENSCJAG00000010844	KNOWN	protein_coding	APIP	chromosome:C_jacchus3.2.1:11:1:130397257:1	98101707	98135262	R	Methylthioribulose-1-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_03116}  [Source:UniProtKB/TrEMBL;Acc:F7HHV2]
ENSCJAG00000012652	KNOWN	protein_coding	WDR16	chromosome:C_jacchus3.2.1:5:1:159171411:1	72180920	72251034	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023210}; WD repeat-containing protein 16 isoform b {ECO:0000313|EMBL:JAB22435.1}  [Source:UniProtKB/TrEMBL;Acc:F7IQE6]
ENSCJAG00000004927	KNOWN_BY_PROJECTION	protein_coding	ZWINT	chromosome:C_jacchus3.2.1:12:1:121768101:1	67895813	67899692	D	ZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]
ENSCJAG00000019978	NOVEL	protein_coding	ENSCJAG00000019978	chromosome:C_jacchus3.2.1:3:1:190850796:1	119771918	119785407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037150}  [Source:UniProtKB/TrEMBL;Acc:F7BJI7]
ENSCJAG00000019977	KNOWN	protein_coding	PARM1	chromosome:C_jacchus3.2.1:3:1:190850796:1	119694390	119807111	R	Prostate androgen-regulated mucin-like protein 1 {ECO:0000313|EMBL:JAB11640.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037149}  [Source:UniProtKB/TrEMBL;Acc:F7BKA4]
ENSCJAG00000019975	NOVEL	pseudogene	ENSCJAG00000019975	chromosome:C_jacchus3.2.1:3:1:190850796:1	119324031	119324520	D	<no descrition>
ENSCJAG00000010810	KNOWN_BY_PROJECTION	protein_coding	EHF	chromosome:C_jacchus3.2.1:11:1:130397257:1	97847832	98012740	D	ets homologous factor [Source:HGNC Symbol;Acc:HGNC:3246]
ENSCJAG00000019972	NOVEL	protein_coding	ENSCJAG00000019972	chromosome:C_jacchus3.2.1:3:1:190850796:1	119273665	119276470	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037147}  [Source:UniProtKB/TrEMBL;Acc:F7BKC2]
ENSCJAG00000011061	KNOWN_BY_PROJECTION	protein_coding	PM20D1	chromosome:C_jacchus3.2.1:19:1:49578535:1	27912048	27933946	R	peptidase M20 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26518]
ENSCJAG00000010551	KNOWN	protein_coding	IPMK	chromosome:C_jacchus3.2.1:12:1:121768101:1	66115868	66180922	D	Inositol polyphosphate multikinase {ECO:0000313|EMBL:JAB28600.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019472}  [Source:UniProtKB/TrEMBL;Acc:F6SSU3]
ENSCJAG00000006819	KNOWN	protein_coding	AFTPH	chromosome:C_jacchus3.2.1:14:1:108792865:1	42360153	42428351	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012712}  [Source:UniProtKB/TrEMBL;Acc:F6SDG2]
ENSCJAG00000012700	KNOWN	protein_coding	DHRS7C	chromosome:C_jacchus3.2.1:5:1:159171411:1	72037836	72063387	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023270}  [Source:UniProtKB/TrEMBL;Acc:F7IIC1]
ENSCJAG00000010565	KNOWN	protein_coding	CISD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	66095218	66114693	R	CDGSH iron-sulfur domain-containing protein 1 {ECO:0000313|EMBL:JAB09616.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019488}  [Source:UniProtKB/TrEMBL;Acc:F6SHE0]
ENSCJAG00000010775	KNOWN_BY_PROJECTION	protein_coding	ELF5	chromosome:C_jacchus3.2.1:11:1:130397257:1	97696854	97732381	R	E74-like factor 5 (ets domain transcription factor) [Source:HGNC Symbol;Acc:HGNC:3320]
ENSCJAG00000012714	NOVEL	protein_coding	ENSCJAG00000012714	chromosome:C_jacchus3.2.1:5:1:159171411:1	72014133	72029473	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023290}  [Source:UniProtKB/TrEMBL;Acc:F7IFZ1]
ENSCJAG00000006818	KNOWN	protein_coding	SERTAD2	chromosome:C_jacchus3.2.1:14:1:108792865:1	42298843	42316330	D	SERTA domain-containing protein 2 {ECO:0000313|EMBL:JAB02893.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012615}  [Source:UniProtKB/TrEMBL;Acc:F6QKT8]
ENSCJAG00000010573	KNOWN	protein_coding	UBE2D1	chromosome:C_jacchus3.2.1:12:1:121768101:1	66011336	66048741	R	Ubiquitin-conjugating enzyme E2 D1 isoform 1 {ECO:0000313|EMBL:JAB03968.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019568}  [Source:UniProtKB/TrEMBL;Acc:F6QMS1]
ENSCJAG00000020437	NOVEL	protein_coding	ENSCJAG00000020437	chromosome:C_jacchus3.2.1:10:1:132174527:1	27620858	27623076	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050128}  [Source:UniProtKB/TrEMBL;Acc:F7H4G2]
ENSCJAG00000019952	KNOWN	protein_coding	RCHY1	chromosome:C_jacchus3.2.1:3:1:190850796:1	119223216	119265799	D	RING finger and CHY zinc finger domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB06852.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037144}  [Source:UniProtKB/TrEMBL;Acc:F7BKH8]
ENSCJAG00000011015	KNOWN	protein_coding	SLC41A1	chromosome:C_jacchus3.2.1:19:1:49578535:1	27873160	27896986	R	Solute carrier family 41 member 1 {ECO:0000313|EMBL:JAB09266.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043574}  [Source:UniProtKB/TrEMBL;Acc:F7IP87]
ENSCJAG00000011404	KNOWN_BY_PROJECTION	protein_coding	INVS	chromosome:C_jacchus3.2.1:1:1:210400635:1	143213530	143414606	D	inversin [Source:HGNC Symbol;Acc:HGNC:17870]
ENSCJAG00000010625	KNOWN_BY_PROJECTION	protein_coding	TFAM	chromosome:C_jacchus3.2.1:12:1:121768101:1	65984199	65993935	R	transcription factor A, mitochondrial [Source:HGNC Symbol;Acc:HGNC:11741]
ENSCJAG00000010694	NOVEL	protein_coding	ENSCJAG00000010694	chromosome:C_jacchus3.2.1:12:1:121768101:1	65827990	65829758	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019698}  [Source:UniProtKB/TrEMBL;Acc:F6SFD0]
ENSCJAG00000006795	KNOWN	protein_coding	SLC1A4	chromosome:C_jacchus3.2.1:14:1:108792865:1	41922138	41954869	R	Neutral amino acid transporter A isoform 1 {ECO:0000313|EMBL:JAB05100.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048055}  [Source:UniProtKB/TrEMBL;Acc:F7FQH5]
ENSCJAG00000019942	KNOWN	protein_coding	THAP6	chromosome:C_jacchus3.2.1:3:1:190850796:1	119209179	119223007	R	THAP domain-containing protein 6 {ECO:0000313|EMBL:JAB03852.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037096}  [Source:UniProtKB/TrEMBL;Acc:F6WNG0]
ENSCJAG00000019939	NOVEL	protein_coding	ENSCJAG00000019939	chromosome:C_jacchus3.2.1:3:1:190850796:1	119173015	119181224	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037068}  [Source:UniProtKB/TrEMBL;Acc:F6XXY7]
ENSCJAG00000010639	KNOWN_BY_PROJECTION	protein_coding	BICC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	65577040	65699661	R	BicC family RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:19351]
ENSCJAG00000006788	KNOWN	protein_coding	CEP68	chromosome:C_jacchus3.2.1:14:1:108792865:1	41863358	41888942	R	Centrosomal protein of 68 kDa {ECO:0000313|EMBL:JAB27035.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012567}  [Source:UniProtKB/TrEMBL;Acc:F7GMI2]
ENSCJAG00000012719	KNOWN_BY_PROJECTION	protein_coding	GLP2R	chromosome:C_jacchus3.2.1:5:1:159171411:1	71949143	72014006	R	glucagon-like peptide 2 receptor [Source:HGNC Symbol;Acc:HGNC:4325]
ENSCJAG00000019926	KNOWN_BY_PROJECTION	protein_coding	CDKL2	chromosome:C_jacchus3.2.1:3:1:190850796:1	119108198	119159889	D	cyclin-dependent kinase-like 2 (CDC2-related kinase) [Source:HGNC Symbol;Acc:HGNC:1782]
ENSCJAG00000011361	KNOWN	protein_coding	ERP44	chromosome:C_jacchus3.2.1:1:1:210400635:1	143111901	143213349	R	Endoplasmic reticulum resident protein 44 {ECO:0000313|EMBL:JAB04948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020953}  [Source:UniProtKB/TrEMBL;Acc:F7H0K4]
ENSCJAG00000019871	KNOWN	protein_coding	SLMAP	chromosome:C_jacchus3.2.1:15:1:98464013:1	33802982	33971616	D	Sarcolemmal membrane-associated protein {ECO:0000313|EMBL:JAB09974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010601}  [Source:UniProtKB/TrEMBL;Acc:F7I1D2]
ENSCJAG00000010699	KNOWN_BY_PROJECTION	protein_coding	PHYHIPL	chromosome:C_jacchus3.2.1:12:1:121768101:1	65172239	65242642	R	phytanoyl-CoA 2-hydroxylase interacting protein-like [Source:HGNC Symbol;Acc:HGNC:29378]
ENSCJAG00000010974	KNOWN	protein_coding	RAB29	chromosome:C_jacchus3.2.1:19:1:49578535:1	27858076	27864332	R	Ras-related protein Rab-7L1 isoform 1 {ECO:0000313|EMBL:JAB03127.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020275}  [Source:UniProtKB/TrEMBL;Acc:F7E162]
ENSCJAG00000015899	KNOWN	protein_coding	MAPK13	chromosome:C_jacchus3.2.1:4:1:171630274:1	37097600	37107315	D	Mitogen-activated protein kinase 13 {ECO:0000313|EMBL:JAB07018.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029374}  [Source:UniProtKB/TrEMBL;Acc:F7I5F4]
ENSCJAG00000010948	KNOWN	protein_coding	NUCKS1	chromosome:C_jacchus3.2.1:19:1:49578535:1	27806453	27837933	R	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 {ECO:0000313|EMBL:JAB07979.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020239}  [Source:UniProtKB/TrEMBL;Acc:F7ET31]
ENSCJAG00000010947	NOVEL	pseudogene	ENSCJAG00000010947	chromosome:C_jacchus3.2.1:19:1:49578535:1	27802708	27802939	D	<no descrition>
ENSCJAG00000010742	KNOWN	protein_coding	CAT	chromosome:C_jacchus3.2.1:11:1:130397257:1	97650040	97689814	D	Callithrix jacchus catalase (CAT), mRNA. [Source:RefSeq mRNA;Acc:NM_001267733]
ENSCJAG00000010943	KNOWN_BY_PROJECTION	protein_coding	SLC45A3	chromosome:C_jacchus3.2.1:19:1:49578535:1	27741833	27765921	R	solute carrier family 45, member 3 [Source:HGNC Symbol;Acc:HGNC:8642]
ENSCJAG00000010936	KNOWN	protein_coding	ELK4	chromosome:C_jacchus3.2.1:19:1:49578535:1	27683420	27715766	R	ETS domain-containing protein Elk-4 isoform a {ECO:0000313|EMBL:JAB01967.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020178}  [Source:UniProtKB/TrEMBL;Acc:F7GB25]
ENSCJAG00000011317	KNOWN	protein_coding	STX17	chromosome:C_jacchus3.2.1:1:1:210400635:1	143035786	143102926	D	Syntaxin-17 {ECO:0000313|EMBL:JAB10484.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020887}  [Source:UniProtKB/TrEMBL;Acc:F7DHB4]
ENSCJAG00000006749	KNOWN	protein_coding	RAB1A	chromosome:C_jacchus3.2.1:14:1:108792865:1	41818072	41860417	D	Ras-related protein Rab-1A isoform 1 {ECO:0000313|EMBL:JAB11717.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012554}  [Source:UniProtKB/TrEMBL;Acc:F7GSP9]
ENSCJAG00000019370	KNOWN_BY_PROJECTION	protein_coding	PPFIA2	chromosome:C_jacchus3.2.1:9:1:124281992:1	71091057	71450368	R	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 [Source:HGNC Symbol;Acc:HGNC:9246]
ENSCJAG00000033817	NOVEL	pseudogene	ENSCJAG00000033817	chromosome:C_jacchus3.2.1:14:1:108792865:1	41757854	41758256	R	<no descrition>
ENSCJAG00000019910	KNOWN_BY_PROJECTION	protein_coding	DENND6A	chromosome:C_jacchus3.2.1:15:1:98464013:1	33677445	33738571	R	DENN/MADD domain containing 6A [Source:HGNC Symbol;Acc:HGNC:26635]
ENSCJAG00000006748	NOVEL	pseudogene	ENSCJAG00000006748	chromosome:C_jacchus3.2.1:14:1:108792865:1	41744162	41744756	D	<no descrition>
ENSCJAG00000010711	KNOWN	protein_coding	ABTB2	chromosome:C_jacchus3.2.1:11:1:130397257:1	97378813	97588985	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019773}  [Source:UniProtKB/TrEMBL;Acc:F6WDH3]
ENSCJAG00000012679	KNOWN_BY_PROJECTION	protein_coding	USP43	chromosome:C_jacchus3.2.1:5:1:159171411:1	71937797	72178823	R	ubiquitin specific peptidase 43 [Source:HGNC Symbol;Acc:HGNC:20072]
ENSCJAG00000031846	NOVEL	protein_coding	ENSCJAG00000031846	chromosome:C_jacchus3.2.1:15:1:98464013:1	33412660	33556906	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017110}  [Source:UniProtKB/TrEMBL;Acc:F7IJR0]
ENSCJAG00000019905	KNOWN	protein_coding	PDE12	chromosome:C_jacchus3.2.1:15:1:98464013:1	33614812	33618923	D	2',5'-phosphodiesterase 12 {ECO:0000313|EMBL:JAB03131.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037009}  [Source:UniProtKB/TrEMBL;Acc:F7A264]
ENSCJAG00000019922	KNOWN	protein_coding	ARF4	chromosome:C_jacchus3.2.1:15:1:98464013:1	33631697	33654414	R	ADP-ribosylation factor 4 {ECO:0000313|EMBL:JAB07027.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037063}  [Source:UniProtKB/TrEMBL;Acc:F6XY54]
ENSCJAG00000006722	KNOWN	protein_coding	ACTR2	chromosome:C_jacchus3.2.1:14:1:108792865:1	41658202	41693302	R	Actin-related protein 2 isoform b {ECO:0000313|EMBL:JAB06596.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012467}  [Source:UniProtKB/TrEMBL;Acc:F7EI23]
ENSCJAG00000011288	KNOWN_BY_PROJECTION	protein_coding	NR4A3	chromosome:C_jacchus3.2.1:1:1:210400635:1	142952115	142995095	D	nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
ENSCJAG00000001378	KNOWN_BY_PROJECTION	protein_coding	USP8	chromosome:C_jacchus3.2.1:10:1:132174527:1	27503458	27586948	D	ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:HGNC:12631]
ENSCJAG00000011279	KNOWN	protein_coding	SEC61B	chromosome:C_jacchus3.2.1:1:1:210400635:1	142351941	142361332	D	Protein transport protein Sec61 subunit beta {ECO:0000313|EMBL:JAB08106.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020762}  [Source:UniProtKB/TrEMBL;Acc:F7GQT6]
ENSCJAG00000014807	KNOWN_BY_PROJECTION	protein_coding	ADAM21	chromosome:C_jacchus3.2.1:1:1:210400635:1	142466545	142468746	D	ADAM metallopeptidase domain 21 [Source:HGNC Symbol;Acc:HGNC:200]
ENSCJAG00000010903	KNOWN	protein_coding	MFSD4	chromosome:C_jacchus3.2.1:19:1:49578535:1	27653265	27687457	D	Major facilitator superfamily domain-containing protein 4 {ECO:0000313|EMBL:JAB08458.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020150}  [Source:UniProtKB/TrEMBL;Acc:F7GL40]
ENSCJAG00000011271	KNOWN_BY_PROJECTION	protein_coding	ALG2	chromosome:C_jacchus3.2.1:1:1:210400635:1	142346126	142351671	R	ALG2, alpha-1,3/1,6-mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:23159]
ENSCJAG00000012758	KNOWN_BY_PROJECTION	protein_coding	RCVRN	chromosome:C_jacchus3.2.1:5:1:159171411:1	71930746	71941088	D	recoverin [Source:HGNC Symbol;Acc:HGNC:9937]
ENSCJAG00000010992	KNOWN	protein_coding	APPL1	chromosome:C_jacchus3.2.1:15:1:98464013:1	33196788	33240880	D	DCC-interacting protein 13-alpha {ECO:0000313|EMBL:JAB04508.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020417}  [Source:UniProtKB/TrEMBL;Acc:F7F5E4]
ENSCJAG00000011244	KNOWN_BY_PROJECTION	protein_coding	TGFBR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	142228926	142276103	D	transforming growth factor, beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]
ENSCJAG00000019897	KNOWN	protein_coding	G3BP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	119081782	119099427	D	Ras GTPase-activating protein-binding protein 2 isoform b {ECO:0000313|EMBL:JAB09799.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037037}  [Source:UniProtKB/TrEMBL;Acc:F6Z1M7]
ENSCJAG00000006693	KNOWN	protein_coding	SPRED2	chromosome:C_jacchus3.2.1:14:1:108792865:1	41493987	41617334	D	Sprouty-related, EVH1 domain-containing protein 2 isoform a {ECO:0000313|EMBL:JAB06880.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012410}  [Source:UniProtKB/TrEMBL;Acc:F7FPG1]
ENSCJAG00000010981	KNOWN	protein_coding	HESX1	chromosome:C_jacchus3.2.1:15:1:98464013:1	33162572	33164891	R	Homeobox expressed in ES cells 1 {ECO:0000313|EMBL:JAB15747.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020271}  [Source:UniProtKB/TrEMBL;Acc:F7E187]
ENSCJAG00000010878	KNOWN_BY_PROJECTION	protein_coding	CDK18	chromosome:C_jacchus3.2.1:19:1:49578535:1	27602459	27610536	D	cyclin-dependent kinase 18 [Source:HGNC Symbol;Acc:HGNC:8751]
ENSCJAG00000006691	NOVEL	pseudogene	ENSCJAG00000006691	chromosome:C_jacchus3.2.1:14:1:108792865:1	41241331	41242039	R	<no descrition>
ENSCJAG00000017264	KNOWN_BY_PROJECTION	protein_coding	LEMD1	chromosome:C_jacchus3.2.1:19:1:49578535:1	27459421	27497735	R	LEM domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18725]
ENSCJAG00000017250	KNOWN_BY_PROJECTION	protein_coding	KLHDC8A	chromosome:C_jacchus3.2.1:19:1:49578535:1	27413268	27500011	R	kelch domain containing 8A [Source:HGNC Symbol;Acc:HGNC:25573]
ENSCJAG00000010960	KNOWN_BY_PROJECTION	protein_coding	IL17RD	chromosome:C_jacchus3.2.1:15:1:98464013:1	33043743	33129514	R	interleukin 17 receptor D [Source:HGNC Symbol;Acc:HGNC:17616]
ENSCJAG00000010585	KNOWN	protein_coding	NAT10	chromosome:C_jacchus3.2.1:11:1:130397257:1	97329615	97373277	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019688}  [Source:UniProtKB/TrEMBL;Acc:F6SQB7]
ENSCJAG00000017246	KNOWN_BY_PROJECTION	protein_coding	NUAK2	chromosome:C_jacchus3.2.1:19:1:49578535:1	27380117	27396651	R	NUAK family, SNF1-like kinase, 2 [Source:HGNC Symbol;Acc:HGNC:29558]
ENSCJAG00000010716	KNOWN_BY_PROJECTION	protein_coding	FAM13C	chromosome:C_jacchus3.2.1:12:1:121768101:1	65056066	65171657	D	family with sequence similarity 13, member C [Source:HGNC Symbol;Acc:HGNC:19371]
ENSCJAG00000001449	KNOWN	protein_coding	GABPB1	chromosome:C_jacchus3.2.1:10:1:132174527:1	27362854	27440925	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002623}  [Source:UniProtKB/TrEMBL;Acc:F7I4J8]
ENSCJAG00000006862	KNOWN	protein_coding	SLC16A9	chromosome:C_jacchus3.2.1:12:1:121768101:1	64649134	64724176	D	Monocarboxylate transporter 9 {ECO:0000313|EMBL:JAB05842.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012721}  [Source:UniProtKB/TrEMBL;Acc:F6SCZ2]
ENSCJAG00000011193	KNOWN_BY_PROJECTION	protein_coding	COL15A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	142070930	142191249	D	collagen, type XV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2192]
ENSCJAG00000019352	KNOWN_BY_PROJECTION	protein_coding	ACSS3	chromosome:C_jacchus3.2.1:9:1:124281992:1	70923475	71087215	D	acyl-CoA synthetase short-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:24723]
ENSCJAG00000012759	KNOWN	protein_coding	GAS7	chromosome:C_jacchus3.2.1:5:1:159171411:1	71605750	71921658	D	Growth arrest-specific protein 7 isoform b {ECO:0000313|EMBL:JAB09410.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049078}  [Source:UniProtKB/TrEMBL;Acc:F6WN67]
ENSCJAG00000010916	KNOWN	protein_coding	ARHGEF3	chromosome:C_jacchus3.2.1:15:1:98464013:1	32661760	33026767	R	Rho guanine nucleotide exchange factor 3 isoform 3 {ECO:0000313|EMBL:JAB09571.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020152}  [Source:UniProtKB/TrEMBL;Acc:F7GL31]
ENSCJAG00000019340	KNOWN_BY_PROJECTION	protein_coding	MYF5	chromosome:C_jacchus3.2.1:9:1:124281992:1	70558887	70562341	D	myogenic factor 5 [Source:HGNC Symbol;Acc:HGNC:7565]
ENSCJAG00000006871	KNOWN_BY_PROJECTION	protein_coding	CCDC6	chromosome:C_jacchus3.2.1:12:1:121768101:1	64488385	64600837	D	coiled-coil domain containing 6 [Source:HGNC Symbol;Acc:HGNC:18782]
ENSCJAG00000019343	KNOWN	protein_coding	LIN7A	chromosome:C_jacchus3.2.1:9:1:124281992:1	70632834	70733168	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035912}  [Source:UniProtKB/TrEMBL;Acc:F7FZ11]
ENSCJAG00000006613	KNOWN	protein_coding	MEIS1	chromosome:C_jacchus3.2.1:14:1:108792865:1	40300605	40445882	R	Homeobox protein Meis1 {ECO:0000313|EMBL:JAB09741.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012355}  [Source:UniProtKB/TrEMBL;Acc:F7HDM8]
ENSCJAG00000019347	NOVEL	pseudogene	ENSCJAG00000019347	chromosome:C_jacchus3.2.1:9:1:124281992:1	70724050	70725068	D	<no descrition>
ENSCJAG00000017317	KNOWN_BY_PROJECTION	protein_coding	C9orf152	chromosome:C_jacchus3.2.1:1:1:210400635:1	153687066	153697565	R	chromosome 9 open reading frame 152 [Source:HGNC Symbol;Acc:HGNC:31455]
ENSCJAG00000002860	KNOWN_BY_PROJECTION	protein_coding	CEP83	chromosome:C_jacchus3.2.1:9:1:124281992:1	84288837	84478269	R	centrosomal protein 83kDa [Source:HGNC Symbol;Acc:HGNC:17966]
ENSCJAG00000010542	KNOWN_BY_PROJECTION	protein_coding	CAPRIN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	97291207	97326600	D	cell cycle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:6743]
ENSCJAG00000019339	KNOWN_BY_PROJECTION	protein_coding	MYF6	chromosome:C_jacchus3.2.1:9:1:124281992:1	70550268	70552072	D	myogenic factor 6 (herculin) [Source:HGNC Symbol;Acc:HGNC:7566]
ENSCJAG00000034435	NOVEL	protein_coding	ENSCJAG00000034435	chromosome:C_jacchus3.2.1:14:1:108792865:1	40041765	40043768	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045201}  [Source:UniProtKB/TrEMBL;Acc:F6RBN7]
ENSCJAG00000019332	NOVEL	protein_coding	ENSCJAG00000019332	chromosome:C_jacchus3.2.1:9:1:124281992:1	70295464	70325014	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035894}  [Source:UniProtKB/TrEMBL;Acc:F7GRY5]
ENSCJAG00000035287	NOVEL	pseudogene	ENSCJAG00000035287	chromosome:C_jacchus3.2.1:14:1:108792865:1	39799793	39800180	R	<no descrition>
ENSCJAG00000010531	KNOWN_BY_PROJECTION	protein_coding	LMO2	chromosome:C_jacchus3.2.1:11:1:130397257:1	97076406	97110040	R	LIM domain only 2 (rhombotin-like 1) [Source:HGNC Symbol;Acc:HGNC:6642]
ENSCJAG00000006604	KNOWN_BY_PROJECTION	protein_coding	ETAA1	chromosome:C_jacchus3.2.1:14:1:108792865:1	39523255	39535742	R	Ewing tumor-associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:24648]
ENSCJAG00000010528	NOVEL	pseudogene	ENSCJAG00000010528	chromosome:C_jacchus3.2.1:11:1:130397257:1	97032902	97034188	D	<no descrition>
ENSCJAG00000006589	KNOWN_BY_PROJECTION	protein_coding	C1D	chromosome:C_jacchus3.2.1:14:1:108792865:1	38884866	38904675	D	C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:HGNC:29911]
ENSCJAG00000006564	KNOWN	protein_coding	PNO1	chromosome:C_jacchus3.2.1:14:1:108792865:1	38775191	38792561	R	Callithrix jacchus partner of NOB1 homolog (S. cerevisiae) (PNO1), mRNA. [Source:RefSeq mRNA;Acc:NM_001270721]
ENSCJAG00000011172	KNOWN_BY_PROJECTION	protein_coding	GALNT12	chromosome:C_jacchus3.2.1:1:1:210400635:1	141930830	141976414	D	polypeptide N-acetylgalactosaminyltransferase 12 [Source:HGNC Symbol;Acc:HGNC:19877]
ENSCJAG00000017230	KNOWN_BY_PROJECTION	protein_coding	TMCC2	chromosome:C_jacchus3.2.1:19:1:49578535:1	27289937	27336251	D	transmembrane and coiled-coil domain family 2 [Source:HGNC Symbol;Acc:HGNC:24239]
ENSCJAG00000019852	KNOWN	protein_coding	USO1	chromosome:C_jacchus3.2.1:3:1:190850796:1	118917135	119005452	R	General vesicular transport factor p115 {ECO:0000313|EMBL:JAB05744.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036989}  [Source:UniProtKB/TrEMBL;Acc:F6Q6L3]
ENSCJAG00000010459	KNOWN	protein_coding	FBXO3	chromosome:C_jacchus3.2.1:11:1:130397257:1	96951262	96993294	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019416}  [Source:UniProtKB/TrEMBL;Acc:F6U1B5]
ENSCJAG00000010847	KNOWN_BY_PROJECTION	protein_coding	FAM208A	chromosome:C_jacchus3.2.1:15:1:98464013:1	32554545	32698489	R	family with sequence similarity 208, member A [Source:HGNC Symbol;Acc:HGNC:30314]
ENSCJAG00000015852	KNOWN_BY_PROJECTION	protein_coding	MAPK14	chromosome:C_jacchus3.2.1:4:1:171630274:1	36998930	37068914	D	mitogen-activated protein kinase 14 [Source:HGNC Symbol;Acc:HGNC:6876]
ENSCJAG00000010443	KNOWN	protein_coding	CD59	chromosome:C_jacchus3.2.1:11:1:130397257:1	96930762	96941315	R	CD59 glycoprotein preproprotein {ECO:0000313|EMBL:JAB06611.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019271}  [Source:UniProtKB/TrEMBL;Acc:F6SUS4]
ENSCJAG00000014333	KNOWN_BY_PROJECTION	protein_coding	PPEF2	chromosome:C_jacchus3.2.1:3:1:190850796:1	118822964	118863573	D	protein phosphatase, EF-hand calcium binding domain 2 [Source:HGNC Symbol;Acc:HGNC:9244]
ENSCJAG00000010819	KNOWN_BY_PROJECTION	protein_coding	CCDC66	chromosome:C_jacchus3.2.1:15:1:98464013:1	32510721	32553532	D	coiled-coil domain containing 66 [Source:HGNC Symbol;Acc:HGNC:27709]
ENSCJAG00000032980	KNOWN_BY_PROJECTION	protein_coding	MYH1	chromosome:C_jacchus3.2.1:5:1:159171411:1	71293413	71318725	D	myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:HGNC:7567]
ENSCJAG00000014067	NOVEL	protein_coding	ENSCJAG00000014067	chromosome:C_jacchus3.2.1:15:1:98464013:1	32418100	32419595	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049673}  [Source:UniProtKB/TrEMBL;Acc:F6YW29]
ENSCJAG00000011142	KNOWN_BY_PROJECTION	protein_coding	ANKS6	chromosome:C_jacchus3.2.1:1:1:210400635:1	141849487	141913691	R	ankyrin repeat and sterile alpha motif domain containing 6 [Source:HGNC Symbol;Acc:HGNC:26724]
ENSCJAG00000014374	KNOWN_BY_PROJECTION	protein_coding	NAAA	chromosome:C_jacchus3.2.1:3:1:190850796:1	118784220	118810620	D	N-acylethanolamine acid amidase [Source:HGNC Symbol;Acc:HGNC:736]
ENSCJAG00000013167	NOVEL	protein_coding	ENSCJAG00000013167	chromosome:C_jacchus3.2.1:5:1:159171411:1	71273678	71276453	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024170}  [Source:UniProtKB/TrEMBL;Acc:F7HE51]
ENSCJAG00000007823	NOVEL	protein_coding	ENSCJAG00000007823	chromosome:C_jacchus3.2.1:15:1:98464013:1	32407636	32441879	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044248}  [Source:UniProtKB/TrEMBL;Acc:F7DKK8]
ENSCJAG00000014396	KNOWN	protein_coding	SDAD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	118733606	118789948	D	Protein SDA1 homolog {ECO:0000313|EMBL:JAB04253.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026593}  [Source:UniProtKB/TrEMBL;Acc:F7I6Y5]
ENSCJAG00000011109	KNOWN_BY_PROJECTION	protein_coding	GABBR2	chromosome:C_jacchus3.2.1:1:1:210400635:1	141432853	141453923	R	gamma-aminobutyric acid (GABA) B receptor, 2 [Source:HGNC Symbol;Acc:HGNC:4507]
ENSCJAG00000007765	KNOWN_BY_PROJECTION	protein_coding	ERC2	chromosome:C_jacchus3.2.1:15:1:98464013:1	31292690	32277590	R	ELKS/RAB6-interacting/CAST family member 2 [Source:HGNC Symbol;Acc:HGNC:31922]
ENSCJAG00000037088	KNOWN_BY_PROJECTION	protein_coding	CXCL9	chromosome:C_jacchus3.2.1:3:1:190850796:1	118716546	118720780	D	chemokine (C-X-C motif) ligand 9 [Source:HGNC Symbol;Acc:HGNC:7098]
ENSCJAG00000006498	KNOWN	protein_coding	WDR92	chromosome:C_jacchus3.2.1:14:1:108792865:1	38700202	38822385	D	Callithrix jacchus protein phosphatase 3, regulatory subunit B, alpha (PPP3R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001270720]
ENSCJAG00000014474	KNOWN_BY_PROJECTION	protein_coding	CXCL10	chromosome:C_jacchus3.2.1:3:1:190850796:1	118697909	118700338	D	chemokine (C-X-C motif) ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]
ENSCJAG00000017201	KNOWN	protein_coding	DSTYK	chromosome:C_jacchus3.2.1:19:1:49578535:1	27205049	27273237	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031667}  [Source:UniProtKB/TrEMBL;Acc:F7IA34]
ENSCJAG00000007750	KNOWN	protein_coding	WNT5A	chromosome:C_jacchus3.2.1:15:1:98464013:1	31255314	31272639	R	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F7I9E2]
ENSCJAG00000010786	NOVEL	pseudogene	ENSCJAG00000010786	chromosome:C_jacchus3.2.1:4:1:171630274:1	36927159	36927424	R	<no descrition>
ENSCJAG00000007738	KNOWN	protein_coding	LRTM1	chromosome:C_jacchus3.2.1:15:1:98464013:1	30704084	30759464	R	Leucine-rich repeat and transmembrane domain-containing protein 1 {ECO:0000313|EMBL:JAB17186.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014333}  [Source:UniProtKB/TrEMBL;Acc:F7IGJ2]
ENSCJAG00000006485	KNOWN	protein_coding	CNRIP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	38637676	38659876	D	CB1 cannabinoid receptor-interacting protein 1 isoform CRIP1a {ECO:0000313|EMBL:JAB04288.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011984}  [Source:UniProtKB/TrEMBL;Acc:F7F7F9]
ENSCJAG00000014481	KNOWN_BY_PROJECTION	protein_coding	CXCL11	chromosome:C_jacchus3.2.1:3:1:190850796:1	118686566	118688906	D	chemokine (C-X-C motif) ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]
ENSCJAG00000011059	KNOWN_BY_PROJECTION	protein_coding	TBC1D2	chromosome:C_jacchus3.2.1:1:1:210400635:1	141339214	141399385	R	TBC1 domain family, member 2 [Source:HGNC Symbol;Acc:HGNC:18026]
ENSCJAG00000015817	KNOWN_BY_PROJECTION	protein_coding	SLC26A8	chromosome:C_jacchus3.2.1:4:1:171630274:1	36892592	36996498	R	solute carrier family 26 (anion exchanger), member 8 [Source:HGNC Symbol;Acc:HGNC:14468]
ENSCJAG00000006473	KNOWN	protein_coding	FBXO48	chromosome:C_jacchus3.2.1:14:1:108792865:1	38510431	38511396	D	F-box only protein 48 {ECO:0000313|EMBL:JAB23793.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011934}  [Source:UniProtKB/TrEMBL;Acc:F7GBR8]
ENSCJAG00000006477	KNOWN_BY_PROJECTION	protein_coding	PLEK	chromosome:C_jacchus3.2.1:14:1:108792865:1	38559749	38594839	R	pleckstrin [Source:HGNC Symbol;Acc:HGNC:9070]
ENSCJAG00000010403	KNOWN_BY_PROJECTION	protein_coding	KIAA1549L	chromosome:C_jacchus3.2.1:11:1:130397257:1	96762683	96890418	D	KIAA1549-like [Source:HGNC Symbol;Acc:HGNC:24836]
ENSCJAG00000017172	KNOWN	protein_coding	RBBP5	chromosome:C_jacchus3.2.1:19:1:49578535:1	27020888	27056227	R	Retinoblastoma-binding protein 5 isoform 2 {ECO:0000313|EMBL:JAB09461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031614}  [Source:UniProtKB/TrEMBL;Acc:F7IJI7]
ENSCJAG00000019323	KNOWN_BY_PROJECTION	protein_coding	OTOGL	chromosome:C_jacchus3.2.1:9:1:124281992:1	70054581	70219451	D	otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
ENSCJAG00000011027	KNOWN_BY_PROJECTION	protein_coding	CORO2A	chromosome:C_jacchus3.2.1:1:1:210400635:1	141261419	141295727	R	coronin, actin binding protein, 2A [Source:HGNC Symbol;Acc:HGNC:2255]
ENSCJAG00000019067	KNOWN_BY_PROJECTION	protein_coding	PROKR1	chromosome:C_jacchus3.2.1:14:1:108792865:1	38308491	38324386	R	prokineticin receptor 1 [Source:HGNC Symbol;Acc:HGNC:4524]
ENSCJAG00000006460	KNOWN_BY_PROJECTION	protein_coding	APLF	chromosome:C_jacchus3.2.1:14:1:108792865:1	38424017	38507790	R	aprataxin and PNKP like factor [Source:HGNC Symbol;Acc:HGNC:28724]
ENSCJAG00000001489	KNOWN_BY_PROJECTION	protein_coding	HDC	chromosome:C_jacchus3.2.1:10:1:132174527:1	27322458	27349182	R	histidine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4855]
ENSCJAG00000010990	KNOWN	protein_coding	TRIM14	chromosome:C_jacchus3.2.1:1:1:210400635:1	141218353	141256246	R	Tripartite motif-containing protein 14 {ECO:0000313|EMBL:JAB17775.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020331}  [Source:UniProtKB/TrEMBL;Acc:F7H1L9]
ENSCJAG00000007622	NOVEL	protein_coding	ENSCJAG00000007622	chromosome:C_jacchus3.2.1:15:1:98464013:1	29932915	30863164	D	<no descrition>
ENSCJAG00000019322	NOVEL	protein_coding	ENSCJAG00000019322	chromosome:C_jacchus3.2.1:9:1:124281992:1	69755118	69756088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035874}  [Source:UniProtKB/TrEMBL;Acc:F7GX06]
ENSCJAG00000014490	KNOWN_BY_PROJECTION	protein_coding	ART3	chromosome:C_jacchus3.2.1:3:1:190850796:1	118595645	118712997	R	ADP-ribosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:725]
ENSCJAG00000010402	KNOWN	protein_coding	HIPK3	chromosome:C_jacchus3.2.1:11:1:130397257:1	96460990	96570700	D	Homeodomain-interacting protein kinase 3 isoform 2 {ECO:0000313|EMBL:JAB25062.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010088}  [Source:UniProtKB/TrEMBL;Acc:F7ABS7]
ENSCJAG00000019073	KNOWN_BY_PROJECTION	protein_coding	ARHGAP25	chromosome:C_jacchus3.2.1:14:1:108792865:1	38154162	38253917	R	Rho GTPase activating protein 25 [Source:HGNC Symbol;Acc:HGNC:28951]
ENSCJAG00000033150	NOVEL	protein_coding	ENSCJAG00000033150	chromosome:C_jacchus3.2.1:9:1:124281992:1	69741100	69741607	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050755}  [Source:UniProtKB/TrEMBL;Acc:F7D6Y1]
ENSCJAG00000017136	KNOWN_BY_PROJECTION	protein_coding	CNTN2	chromosome:C_jacchus3.2.1:19:1:49578535:1	26976271	27012451	D	contactin 2 (axonal) [Source:HGNC Symbol;Acc:HGNC:2172]
ENSCJAG00000007612	KNOWN	protein_coding	SELK	chromosome:C_jacchus3.2.1:15:1:98464013:1	29692949	29699499	R	Callithrix jacchus selenoprotein K (SELK), mRNA. [Source:RefSeq mRNA;Acc:NM_001199915]
ENSCJAG00000019271	KNOWN	protein_coding	PPP1R12A	chromosome:C_jacchus3.2.1:9:1:124281992:1	69577934	69745761	R	Protein phosphatase 1 regulatory subunit 12 {ECO:0000256|PIRNR:PIRNR038141}  [Source:UniProtKB/TrEMBL;Acc:F7GX51]
ENSCJAG00000019096	KNOWN_BY_PROJECTION	protein_coding	BMP10	chromosome:C_jacchus3.2.1:14:1:108792865:1	38107249	38113277	D	bone morphogenetic protein 10 [Source:HGNC Symbol;Acc:HGNC:20869]
ENSCJAG00000033623	NOVEL	protein_coding	ENSCJAG00000033623	chromosome:C_jacchus3.2.1:14:1:108792865:1	38044597	38050431	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042968}  [Source:UniProtKB/TrEMBL;Acc:F6V1F3]
ENSCJAG00000010966	KNOWN_BY_PROJECTION	protein_coding	NANS	chromosome:C_jacchus3.2.1:1:1:210400635:1	141184270	141217408	D	N-acetylneuraminic acid synthase [Source:HGNC Symbol;Acc:HGNC:19237]
ENSCJAG00000007566	KNOWN	protein_coding	ACTR8	chromosome:C_jacchus3.2.1:15:1:98464013:1	29677401	29690487	R	Actin-related protein 8 {ECO:0000313|EMBL:JAB06198.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014110}  [Source:UniProtKB/TrEMBL;Acc:F7IJ05]
ENSCJAG00000019268	NOVEL	pseudogene	ENSCJAG00000019268	chromosome:C_jacchus3.2.1:9:1:124281992:1	69541733	69542124	D	<no descrition>
ENSCJAG00000001504	KNOWN_BY_PROJECTION	protein_coding	SLC27A2	chromosome:C_jacchus3.2.1:10:1:132174527:1	27263548	27316658	D	solute carrier family 27 (fatty acid transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10996]
ENSCJAG00000007563	KNOWN_BY_PROJECTION	protein_coding	CHDH	chromosome:C_jacchus3.2.1:15:1:98464013:1	29627967	29652581	R	choline dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24288]
ENSCJAG00000010946	KNOWN	protein_coding	ANP32B	chromosome:C_jacchus3.2.1:1:1:210400635:1	141115633	141147907	D	Acidic leucine-rich nuclear phosphoprotein 32 family member B {ECO:0000313|EMBL:JAB03949.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020213}  [Source:UniProtKB/TrEMBL;Acc:F7ETK3]
ENSCJAG00000007546	KNOWN_BY_PROJECTION	protein_coding	IL17RB	chromosome:C_jacchus3.2.1:15:1:98464013:1	29566406	29677411	D	interleukin 17 receptor B [Source:HGNC Symbol;Acc:HGNC:18015]
ENSCJAG00000019101	KNOWN_BY_PROJECTION	protein_coding	GKN2	chromosome:C_jacchus3.2.1:14:1:108792865:1	38018026	38030882	D	gastrokine 2 [Source:HGNC Symbol;Acc:HGNC:24588]
ENSCJAG00000019108	KNOWN_BY_PROJECTION	protein_coding	GKN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	37992033	37998170	R	gastrokine 1 [Source:HGNC Symbol;Acc:HGNC:23217]
ENSCJAG00000005533	KNOWN	protein_coding	CSTF3	chromosome:C_jacchus3.2.1:11:1:130397257:1	96283477	96362580	R	Cleavage stimulation factor subunit 3 isoform 1 {ECO:0000313|EMBL:JAB08237.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010292}  [Source:UniProtKB/TrEMBL;Acc:F7BUE9]
ENSCJAG00000015768	KNOWN_BY_PROJECTION	protein_coding	SRPK1	chromosome:C_jacchus3.2.1:4:1:171630274:1	36785774	36872371	R	SRSF protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:11305]
ENSCJAG00000005680	NOVEL	pseudogene	ENSCJAG00000005680	chromosome:C_jacchus3.2.1:11:1:130397257:1	96271994	96272856	R	<no descrition>
ENSCJAG00000010940	KNOWN_BY_PROJECTION	protein_coding	HEMGN	chromosome:C_jacchus3.2.1:1:1:210400635:1	141057182	141074563	R	hemogen [Source:HGNC Symbol;Acc:HGNC:17509]
ENSCJAG00000015765	KNOWN_BY_PROJECTION	protein_coding	LHFPL5	chromosome:C_jacchus3.2.1:4:1:171630274:1	36754029	36762789	D	lipoma HMGIC fusion partner-like 5 [Source:HGNC Symbol;Acc:HGNC:21253]
ENSCJAG00000010923	KNOWN	protein_coding	C9ORF156	chromosome:C_jacchus3.2.1:1:1:210400635:1	141034889	141053350	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020161}  [Source:UniProtKB/TrEMBL;Acc:F7GKW7]
ENSCJAG00000012860	KNOWN_BY_PROJECTION	protein_coding	MYH4	chromosome:C_jacchus3.2.1:5:1:159171411:1	71259955	71506441	D	myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
ENSCJAG00000015758	KNOWN_BY_PROJECTION	protein_coding	CLPS	chromosome:C_jacchus3.2.1:4:1:171630274:1	36748741	36750600	R	colipase, pancreatic [Source:HGNC Symbol;Acc:HGNC:2085]
ENSCJAG00000006912	KNOWN	protein_coding	ANK3	chromosome:C_jacchus3.2.1:12:1:121768101:1	63807612	64352125	D	Ankyrin-3 isoform 2 {ECO:0000313|EMBL:JAB07538.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043555}  [Source:UniProtKB/TrEMBL;Acc:F7IRN3]
ENSCJAG00000010918	KNOWN_BY_PROJECTION	protein_coding	FOXE1	chromosome:C_jacchus3.2.1:1:1:210400635:1	140971960	140973374	D	forkhead box E1 [Source:HGNC Symbol;Acc:HGNC:3806]
ENSCJAG00000019111	KNOWN_BY_PROJECTION	protein_coding	ANTXR1	chromosome:C_jacchus3.2.1:14:1:108792865:1	37686618	37956615	R	anthrax toxin receptor 1 [Source:HGNC Symbol;Acc:HGNC:21014]
ENSCJAG00000005638	KNOWN	protein_coding	TCP11L1	chromosome:C_jacchus3.2.1:11:1:130397257:1	96236332	96306177	D	T-complex protein 11-like protein 1 {ECO:0000313|EMBL:JAB10388.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010346}  [Source:UniProtKB/TrEMBL;Acc:F6ZT02]
ENSCJAG00000007392	KNOWN_BY_PROJECTION	protein_coding	CACNA1D	chromosome:C_jacchus3.2.1:15:1:98464013:1	29289457	29622646	D	calcium channel, voltage-dependent, L type, alpha 1D subunit [Source:HGNC Symbol;Acc:HGNC:1391]
ENSCJAG00000015756	KNOWN_BY_PROJECTION	protein_coding	CLPSL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	36735665	36742386	D	colipase-like 1 [Source:HGNC Symbol;Acc:HGNC:21251]
ENSCJAG00000010911	KNOWN	protein_coding	XPA	chromosome:C_jacchus3.2.1:1:1:210400635:1	140793404	140819752	R	DNA repair protein complementing XP-A cells {ECO:0000313|EMBL:JAB07166.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020122}  [Source:UniProtKB/TrEMBL;Acc:F7GRR4]
ENSCJAG00000015754	KNOWN_BY_PROJECTION	protein_coding	CLPSL2	chromosome:C_jacchus3.2.1:4:1:171630274:1	36730607	36733865	D	colipase-like 2 [Source:HGNC Symbol;Acc:HGNC:21250]
ENSCJAG00000005754	KNOWN	protein_coding	QSER1	chromosome:C_jacchus3.2.1:11:1:130397257:1	96117205	96335377	D	Glutamine and serine-rich protein 1 {ECO:0000313|EMBL:JAB49552.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010631}  [Source:UniProtKB/TrEMBL;Acc:F7HZ02]
ENSCJAG00000015725	KNOWN_BY_PROJECTION	protein_coding	FKBP5	chromosome:C_jacchus3.2.1:4:1:171630274:1	36516462	36642892	R	FK506 binding protein 5 [Source:HGNC Symbol;Acc:HGNC:3721]
ENSCJAG00000001516	KNOWN_BY_PROJECTION	protein_coding	ATP8B4	chromosome:C_jacchus3.2.1:10:1:132174527:1	26959705	27223334	R	ATPase, class I, type 8B, member 4 [Source:HGNC Symbol;Acc:HGNC:13536]
ENSCJAG00000010840	KNOWN	protein_coding	NCBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	140751703	141059853	D	Nuclear cap-binding protein subunit 1 {ECO:0000313|EMBL:JAB03135.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020106}  [Source:UniProtKB/TrEMBL;Acc:F7GRU0]
ENSCJAG00000019156	KNOWN	protein_coding	NFU1	chromosome:C_jacchus3.2.1:14:1:108792865:1	37466448	37513005	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035549}  [Source:UniProtKB/TrEMBL;Acc:F7I1L6]
ENSCJAG00000019141	KNOWN_BY_PROJECTION	protein_coding	GFPT1	chromosome:C_jacchus3.2.1:14:1:108792865:1	37538516	37595562	D	glutamine--fructose-6-phosphate transaminase 1 [Source:HGNC Symbol;Acc:HGNC:4241]
ENSCJAG00000005688	KNOWN	protein_coding	DEPDC7	chromosome:C_jacchus3.2.1:11:1:130397257:1	96209653	96227322	D	DEP domain-containing protein 7 isoform 1 {ECO:0000313|EMBL:JAB09009.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010548}  [Source:UniProtKB/TrEMBL;Acc:F7IFL4]
ENSCJAG00000015745	KNOWN_BY_PROJECTION	protein_coding	ARMC12	chromosome:C_jacchus3.2.1:4:1:171630274:1	36690756	36701710	D	armadillo repeat containing 12 [Source:HGNC Symbol;Acc:HGNC:21099]
ENSCJAG00000019140	NOVEL	pseudogene	ENSCJAG00000019140	chromosome:C_jacchus3.2.1:14:1:108792865:1	37656736	37657375	R	<no descrition>
ENSCJAG00000015114	KNOWN	protein_coding	EIF4A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74269213	74275993	R	Callithrix jacchus eukaryotic translation initiation factor 4A1 (EIF4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205137]
ENSCJAG00000007391	NOVEL	pseudogene	ENSCJAG00000007391	chromosome:C_jacchus3.2.1:15:1:98464013:1	29267274	29267661	R	<no descrition>
ENSCJAG00000007019	NOVEL	protein_coding	ENSCJAG00000007019	chromosome:C_jacchus3.2.1:12:1:121768101:1	63604214	63604994	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013017}  [Source:UniProtKB/TrEMBL;Acc:F7B357]
ENSCJAG00000005797	KNOWN	protein_coding	PRRG4	chromosome:C_jacchus3.2.1:11:1:130397257:1	96018584	96039563	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010643}  [Source:UniProtKB/TrEMBL;Acc:F7HWP9]
ENSCJAG00000019265	KNOWN	protein_coding	PAWR	chromosome:C_jacchus3.2.1:9:1:124281992:1	69381619	69488751	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035752}  [Source:UniProtKB/TrEMBL;Acc:F7EV66]
ENSCJAG00000019159	KNOWN_BY_PROJECTION	protein_coding	AAK1	chromosome:C_jacchus3.2.1:14:1:108792865:1	37271088	37434683	D	AP2 associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:19679]
ENSCJAG00000007337	KNOWN	protein_coding	DCP1A	chromosome:C_jacchus3.2.1:15:1:98464013:1	29092699	29137619	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013741}; mRNA-decapping enzyme 1A {ECO:0000313|EMBL:JAB04240.1}  [Source:UniProtKB/TrEMBL;Acc:F6X3U6]
ENSCJAG00000007001	KNOWN_BY_PROJECTION	protein_coding	CDK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	63589985	63608158	R	cyclin-dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]
ENSCJAG00000010818	KNOWN	protein_coding	TSTD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	140730963	140751400	R	Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 {ECO:0000313|EMBL:JAB07647.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019967}  [Source:UniProtKB/TrEMBL;Acc:F6Z822]
ENSCJAG00000017046	KNOWN	protein_coding	NFASC	chromosome:C_jacchus3.2.1:19:1:49578535:1	26747023	26950840	D	Neurofascin isoform 1 {ECO:0000313|EMBL:JAB31294.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031450}  [Source:UniProtKB/TrEMBL;Acc:F7ICJ5]
ENSCJAG00000019262	KNOWN	protein_coding	SYT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	68686585	69281601	D	Synaptotagmin-1 {ECO:0000313|EMBL:JAB22867.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011089}  [Source:UniProtKB/TrEMBL;Acc:F7IDL8]
ENSCJAG00000010783	KNOWN_BY_PROJECTION	protein_coding	TMOD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	140628867	140730353	D	tropomodulin 1 [Source:HGNC Symbol;Acc:HGNC:11871]
ENSCJAG00000001548	KNOWN_BY_PROJECTION	protein_coding	DTWD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	26759509	26775354	D	DTW domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30926]
ENSCJAG00000034749	NOVEL	pseudogene	ENSCJAG00000034749	chromosome:C_jacchus3.2.1:14:1:108792865:1	37231034	37232445	D	<no descrition>
ENSCJAG00000005803	KNOWN_BY_PROJECTION	protein_coding	CCDC73	chromosome:C_jacchus3.2.1:11:1:130397257:1	95778431	95984479	R	coiled-coil domain containing 73 [Source:HGNC Symbol;Acc:HGNC:23261]
ENSCJAG00000001572	KNOWN	protein_coding	FGF7	chromosome:C_jacchus3.2.1:10:1:132174527:1	26557514	26620790	D	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F7IBI2]
ENSCJAG00000014513	KNOWN	protein_coding	NUP54	chromosome:C_jacchus3.2.1:3:1:190850796:1	118547957	118588471	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026829}  [Source:UniProtKB/TrEMBL;Acc:F7I6T2]
ENSCJAG00000007253	KNOWN_BY_PROJECTION	protein_coding	TKT	chromosome:C_jacchus3.2.1:15:1:98464013:1	29024166	29041334	R	transketolase [Source:HGNC Symbol;Acc:HGNC:11834]
ENSCJAG00000015713	KNOWN_BY_PROJECTION	protein_coding	TULP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	36428921	36444577	R	tubby like protein 1 [Source:HGNC Symbol;Acc:HGNC:12423]
ENSCJAG00000010731	KNOWN	protein_coding	TDRD7	chromosome:C_jacchus3.2.1:1:1:210400635:1	140541315	140623993	D	Tudor domain-containing protein 7 {ECO:0000313|EMBL:JAB13795.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019868}  [Source:UniProtKB/TrEMBL;Acc:F7BTF1]
ENSCJAG00000001562	KNOWN_BY_PROJECTION	protein_coding	FAM227B	chromosome:C_jacchus3.2.1:10:1:132174527:1	26440115	26756759	R	family with sequence similarity 227, member B [Source:HGNC Symbol;Acc:HGNC:26543]
ENSCJAG00000001580	KNOWN_BY_PROJECTION	protein_coding	GALK2	chromosome:C_jacchus3.2.1:10:1:132174527:1	26401811	26439885	D	galactokinase 2 [Source:HGNC Symbol;Acc:HGNC:4119]
ENSCJAG00000007250	NOVEL	protein_coding	ENSCJAG00000007250	chromosome:C_jacchus3.2.1:15:1:98464013:1	29014163	29015384	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013484}  [Source:UniProtKB/TrEMBL;Acc:F6UU97]
ENSCJAG00000007026	KNOWN	protein_coding	RHOBTB1	chromosome:C_jacchus3.2.1:12:1:121768101:1	63381132	63517639	D	Rho-related BTB domain-containing protein 1 {ECO:0000313|EMBL:JAB02955.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013075}  [Source:UniProtKB/TrEMBL;Acc:F6Z2H7]
ENSCJAG00000017024	KNOWN_BY_PROJECTION	protein_coding	LRRN2	chromosome:C_jacchus3.2.1:19:1:49578535:1	26528870	26531369	R	leucine rich repeat neuronal 2 [Source:HGNC Symbol;Acc:HGNC:16914]
ENSCJAG00000010698	KNOWN_BY_PROJECTION	protein_coding	CCDC180	chromosome:C_jacchus3.2.1:1:1:210400635:1	140444896	140516403	D	coiled-coil domain containing 180 [Source:HGNC Symbol;Acc:HGNC:29303]
ENSCJAG00000007057	KNOWN_BY_PROJECTION	protein_coding	TMEM26	chromosome:C_jacchus3.2.1:12:1:121768101:1	62925901	62977098	D	transmembrane protein 26 [Source:HGNC Symbol;Acc:HGNC:28550]
ENSCJAG00000007069	KNOWN	protein_coding	C10ORF107	chromosome:C_jacchus3.2.1:12:1:121768101:1	62608132	62716672	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013113}; Uncharacterized protein C10orf107 {ECO:0000313|EMBL:JAB11926.1}  [Source:UniProtKB/TrEMBL;Acc:F6VK16]
ENSCJAG00000007197	KNOWN	protein_coding	PRKCD	chromosome:C_jacchus3.2.1:15:1:98464013:1	28963900	28997216	D	Protein kinase C delta type {ECO:0000256|PIRNR:PIRNR000551}  [Source:UniProtKB/TrEMBL;Acc:F6ZHC0]
ENSCJAG00000019192	KNOWN	protein_coding	ANXA4	chromosome:C_jacchus3.2.1:14:1:108792865:1	37091220	37174389	R	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F7GSA3]
ENSCJAG00000007072	KNOWN	protein_coding	ARID5B	chromosome:C_jacchus3.2.1:12:1:121768101:1	62266637	62428329	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013137}  [Source:UniProtKB/TrEMBL;Acc:F6VIQ0]
ENSCJAG00000005845	KNOWN_BY_PROJECTION	protein_coding	EIF3M	chromosome:C_jacchus3.2.1:11:1:130397257:1	95752335	95779100	D	eukaryotic translation initiation factor 3, subunit M [Source:HGNC Symbol;Acc:HGNC:24460]
ENSCJAG00000012798	KNOWN_BY_PROJECTION	protein_coding	MYH3	chromosome:C_jacchus3.2.1:5:1:159171411:1	71157003	71183381	D	myosin, heavy chain 3, skeletal muscle, embryonic [Source:HGNC Symbol;Acc:HGNC:7573]
ENSCJAG00000014583	KNOWN	protein_coding	SCARB2	chromosome:C_jacchus3.2.1:3:1:190850796:1	118471181	118536404	D	Lysosome membrane protein 2 isoform 1 {ECO:0000313|EMBL:JAB10232.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026897}  [Source:UniProtKB/TrEMBL;Acc:F7HZN6]
ENSCJAG00000007179	KNOWN	protein_coding	RFT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28887367	28927074	R	Protein RFT1 homolog {ECO:0000313|EMBL:JAB03870.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013368}  [Source:UniProtKB/TrEMBL;Acc:F7B056]
ENSCJAG00000015661	KNOWN_BY_PROJECTION	protein_coding	TEAD3	chromosome:C_jacchus3.2.1:4:1:171630274:1	36402260	36414772	R	TEA domain family member 3 [Source:HGNC Symbol;Acc:HGNC:11716]
ENSCJAG00000036537	NOVEL	protein_coding	ENSCJAG00000036537	chromosome:C_jacchus3.2.1:3:1:190850796:1	118384768	118422789	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026943}  [Source:UniProtKB/TrEMBL;Acc:F7ISV8]
ENSCJAG00000007089	KNOWN	protein_coding	SFMBT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28696732	28843197	R	Scm-like with four MBT domains protein 1 {ECO:0000313|EMBL:JAB04745.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013332}  [Source:UniProtKB/TrEMBL;Acc:F7BZT4]
ENSCJAG00000034895	NOVEL	pseudogene	ENSCJAG00000034895	chromosome:C_jacchus3.2.1:11:1:130397257:1	95605579	95605852	D	<no descrition>
ENSCJAG00000013168	KNOWN	protein_coding	SCO1	chromosome:C_jacchus3.2.1:5:1:159171411:1	71112185	71129697	D	Protein SCO1 homolog, mitochondrial {ECO:0000313|EMBL:JAB17324.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024190}  [Source:UniProtKB/TrEMBL;Acc:F7H8W6]
ENSCJAG00000007086	KNOWN_BY_PROJECTION	protein_coding	RTKN2	chromosome:C_jacchus3.2.1:12:1:121768101:1	62077383	62149389	D	rhotekin 2 [Source:HGNC Symbol;Acc:HGNC:19364]
ENSCJAG00000013179	KNOWN_BY_PROJECTION	protein_coding	ADPRM	chromosome:C_jacchus3.2.1:5:1:159171411:1	71101077	71112143	R	ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent [Source:HGNC Symbol;Acc:HGNC:30925]
ENSCJAG00000014715	KNOWN_BY_PROJECTION	protein_coding	TAF9	chromosome:C_jacchus3.2.1:3:1:190850796:1	118249362	118250184	R	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa [Source:HGNC Symbol;Acc:HGNC:11542]
ENSCJAG00000007080	KNOWN	protein_coding	MUSTN1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28621077	28623124	R	Musculoskeletal embryonic nuclear protein 1 {ECO:0000313|EMBL:JAB08522.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013145}  [Source:UniProtKB/TrEMBL;Acc:F6UYH0]
ENSCJAG00000013514	NOVEL	protein_coding	ENSCJAG00000013514	chromosome:C_jacchus3.2.1:1:1:210400635:1	140399273	140434316	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019755}  [Source:UniProtKB/TrEMBL;Acc:F6WXP5]
ENSCJAG00000014639	KNOWN	protein_coding	FAM47E-STBD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	118353657	118422755	R	Starch-binding domain-containing protein 1 {ECO:0000313|EMBL:JAB05203.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026934}  [Source:UniProtKB/TrEMBL;Acc:F7HPD9]
ENSCJAG00000031804	NOVEL	protein_coding	ENSCJAG00000031804	chromosome:C_jacchus3.2.1:15:1:98464013:1	28631705	28689534	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013143}  [Source:UniProtKB/TrEMBL;Acc:F6UYI2]
ENSCJAG00000015919	KNOWN_BY_PROJECTION	protein_coding	RAD18	chromosome:C_jacchus3.2.1:15:1:98464013:1	60794992	60895295	R	RAD18 E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:18278]
ENSCJAG00000018736	KNOWN	protein_coding	PGBD2	chromosome:C_jacchus3.2.1:19:1:49578535:1	32056938	32076267	R	PiggyBac transposable element-derived protein 2 isoform a {ECO:0000313|EMBL:JAB07178.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034793}  [Source:UniProtKB/TrEMBL;Acc:F7I1C5]
ENSCJAG00000015623	KNOWN	protein_coding	FANCE	chromosome:C_jacchus3.2.1:4:1:171630274:1	36378806	36445654	D	Fanconi anemia group E protein {ECO:0000313|EMBL:JAB04566.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043258}  [Source:UniProtKB/TrEMBL;Acc:F7IAE7]
ENSCJAG00000010695	NOVEL	pseudogene	ENSCJAG00000010695	chromosome:C_jacchus3.2.1:1:1:210400635:1	140396259	140397240	R	<no descrition>
ENSCJAG00000007112	KNOWN	protein_coding	ZNF365	chromosome:C_jacchus3.2.1:12:1:121768101:1	61877187	61982438	R	Protein ZNF365 isoform A {ECO:0000313|EMBL:JAB16995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013214}  [Source:UniProtKB/TrEMBL;Acc:F6Z112]
ENSCJAG00000010685	KNOWN_BY_PROJECTION	protein_coding	IGFBPL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	140358184	140374420	R	insulin-like growth factor binding protein-like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
ENSCJAG00000007119	NOVEL	protein_coding	ENSCJAG00000007119	chromosome:C_jacchus3.2.1:12:1:121768101:1	61682288	61719778	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013220}  [Source:UniProtKB/TrEMBL;Acc:F6Z0N3]
ENSCJAG00000016986	KNOWN	protein_coding	MDM4	chromosome:C_jacchus3.2.1:19:1:49578535:1	26413403	26453570	D	Protein Mdm4 isoform 1 {ECO:0000313|EMBL:JAB02699.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031287}  [Source:UniProtKB/TrEMBL;Acc:F7IAD8]
ENSCJAG00000015604	KNOWN	protein_coding	PPARD	chromosome:C_jacchus3.2.1:4:1:171630274:1	36317548	36350431	D	Peroxisome proliferator-activated receptor delta isoform 1 {ECO:0000313|EMBL:JAB06061.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050757}  [Source:UniProtKB/TrEMBL;Acc:F7D6V9]
ENSCJAG00000007045	KNOWN_BY_PROJECTION	protein_coding	ITIH4	chromosome:C_jacchus3.2.1:15:1:98464013:1	28600089	28618677	R	inter-alpha-trypsin inhibitor heavy chain family, member 4 [Source:HGNC Symbol;Acc:HGNC:6169]
ENSCJAG00000015599	NOVEL	protein_coding	ENSCJAG00000015599	chromosome:C_jacchus3.2.1:4:1:171630274:1	36310156	36311676	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028733}  [Source:UniProtKB/TrEMBL;Acc:F7ALG4]
ENSCJAG00000005900	KNOWN_BY_PROJECTION	protein_coding	WT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	95553917	95601520	R	Wilms tumor 1 [Source:HGNC Symbol;Acc:HGNC:12796]
ENSCJAG00000013186	KNOWN	protein_coding	TMEM220	chromosome:C_jacchus3.2.1:5:1:159171411:1	71080418	71098952	D	Transmembrane protein 220 {ECO:0000313|EMBL:JAB05043.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024217}  [Source:UniProtKB/TrEMBL;Acc:F7GN25]
ENSCJAG00000002450	NOVEL	pseudogene	ENSCJAG00000002450	chromosome:C_jacchus3.2.1:5:1:159171411:1	70360631	70361618	D	<no descrition>
ENSCJAG00000023021	KNOWN_BY_PROJECTION	protein_coding	PIRT	chromosome:C_jacchus3.2.1:5:1:159171411:1	70954568	70966563	D	phosphoinositide-interacting regulator of transient receptor potential channels [Source:HGNC Symbol;Acc:HGNC:37239]
ENSCJAG00000004887	KNOWN_BY_PROJECTION	protein_coding	SHISA6	chromosome:C_jacchus3.2.1:5:1:159171411:1	70202868	70553737	R	shisa family member 6 [Source:HGNC Symbol;Acc:HGNC:34491]
ENSCJAG00000019176	KNOWN_BY_PROJECTION	protein_coding	NAV3	chromosome:C_jacchus3.2.1:9:1:124281992:1	67585627	67982042	D	neuron navigator 3 [Source:HGNC Symbol;Acc:HGNC:15998]
ENSCJAG00000019232	KNOWN_BY_PROJECTION	protein_coding	GMCL1	chromosome:C_jacchus3.2.1:14:1:108792865:1	37024835	37087864	R	germ cell-less, spermatogenesis associated 1 [Source:HGNC Symbol;Acc:HGNC:23843]
ENSCJAG00000004790	KNOWN	protein_coding	ZNF18	chromosome:C_jacchus3.2.1:5:1:159171411:1	69694018	69714543	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008748}; Zinc finger protein 18 {ECO:0000313|EMBL:JAB02417.1}  [Source:UniProtKB/TrEMBL;Acc:F7HMB1]
ENSCJAG00000010672	KNOWN_BY_PROJECTION	protein_coding	ALDH1B1	chromosome:C_jacchus3.2.1:1:1:210400635:1	140342783	140347617	D	aldehyde dehydrogenase 1 family, member B1 [Source:HGNC Symbol;Acc:HGNC:407]
ENSCJAG00000005925	KNOWN_BY_PROJECTION	protein_coding	RCN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	95260631	95268576	D	reticulocalbin 1, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:HGNC:9934]
ENSCJAG00000010656	KNOWN	protein_coding	SHB	chromosome:C_jacchus3.2.1:1:1:210400635:1	139870663	140024112	R	SH2 domain-containing adapter protein B {ECO:0000313|EMBL:JAB03510.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019654}  [Source:UniProtKB/TrEMBL;Acc:F6TCG1]
ENSCJAG00000010621	KNOWN	protein_coding	DCAF10	chromosome:C_jacchus3.2.1:1:1:210400635:1	139758224	140054431	D	DDB1-and CUL4-associated factor 10 {ECO:0000313|EMBL:JAB18153.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019614}  [Source:UniProtKB/TrEMBL;Acc:F6PGQ0]
ENSCJAG00000019266	KNOWN	protein_coding	MXD1	chromosome:C_jacchus3.2.1:14:1:108792865:1	36959910	36988763	R	Max dimerization protein 1 isoform 1 {ECO:0000313|EMBL:JAB12649.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048262}  [Source:UniProtKB/TrEMBL;Acc:F7DQU0]
ENSCJAG00000006989	KNOWN_BY_PROJECTION	protein_coding	ITIH3	chromosome:C_jacchus3.2.1:15:1:98464013:1	28581527	28595824	D	inter-alpha-trypsin inhibitor heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:6168]
ENSCJAG00000007123	KNOWN_BY_PROJECTION	protein_coding	EGR2	chromosome:C_jacchus3.2.1:12:1:121768101:1	61547398	61555037	D	early growth response 2 [Source:HGNC Symbol;Acc:HGNC:3239]
ENSCJAG00000010615	NOVEL	pseudogene	ENSCJAG00000010615	chromosome:C_jacchus3.2.1:1:1:210400635:1	139750093	139750713	D	<no descrition>
ENSCJAG00000019277	NOVEL	pseudogene	ENSCJAG00000019277	chromosome:C_jacchus3.2.1:14:1:108792865:1	36941715	36942931	D	<no descrition>
ENSCJAG00000010594	KNOWN	protein_coding	EXOSC3	chromosome:C_jacchus3.2.1:1:1:210400635:1	139735764	139740373	R	Exosome complex component RRP40 isoform 1 {ECO:0000313|EMBL:JAB20174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019553}  [Source:UniProtKB/TrEMBL;Acc:F6QXI9]
ENSCJAG00000007135	NOVEL	pseudogene	ENSCJAG00000007135	chromosome:C_jacchus3.2.1:12:1:121768101:1	61434965	61436039	R	<no descrition>
ENSCJAG00000016736	KNOWN_BY_PROJECTION	protein_coding	PIK3C2B	chromosome:C_jacchus3.2.1:19:1:49578535:1	26306777	26356968	R	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
ENSCJAG00000007142	KNOWN	protein_coding	ENSCJAG00000007142	chromosome:C_jacchus3.2.1:12:1:121768101:1	61228022	61250601	R	Nuclear receptor-binding factor 2 {ECO:0000313|EMBL:JAB11304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013304}  [Source:UniProtKB/TrEMBL;Acc:F7CES8]
ENSCJAG00000019256	KNOWN	protein_coding	SNRNP27	chromosome:C_jacchus3.2.1:14:1:108792865:1	36855360	37010925	R	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein {ECO:0000313|EMBL:JAB34734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048632}  [Source:UniProtKB/TrEMBL;Acc:F6TBS8]
ENSCJAG00000007239	NOVEL	protein_coding	ENSCJAG00000007239	chromosome:C_jacchus3.2.1:12:1:121768101:1	61085608	61087226	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013463}  [Source:UniProtKB/TrEMBL;Acc:F6VGM4]
ENSCJAG00000033350	NOVEL	pseudogene	ENSCJAG00000033350	chromosome:C_jacchus3.2.1:14:1:108792865:1	36799685	36800771	R	<no descrition>
ENSCJAG00000007240	NOVEL	pseudogene	ENSCJAG00000007240	chromosome:C_jacchus3.2.1:12:1:121768101:1	60890815	60891179	R	<no descrition>
ENSCJAG00000022270	NOVEL	pseudogene	ENSCJAG00000022270	chromosome:C_jacchus3.2.1:14:1:108792865:1	36785945	36787488	R	<no descrition>
ENSCJAG00000019291	NOVEL	pseudogene	ENSCJAG00000019291	chromosome:C_jacchus3.2.1:14:1:108792865:1	36768234	36768589	D	<no descrition>
ENSCJAG00000006955	KNOWN_BY_PROJECTION	protein_coding	NEK4	chromosome:C_jacchus3.2.1:15:1:98464013:1	28514367	28557707	R	NIMA-related kinase 4 [Source:HGNC Symbol;Acc:HGNC:11399]
ENSCJAG00000016980	KNOWN	protein_coding	PPP1R15B	chromosome:C_jacchus3.2.1:19:1:49578535:1	26289262	26294991	R	Protein phosphatase 1 regulatory subunit 15B {ECO:0000313|EMBL:JAB04756.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031226}  [Source:UniProtKB/TrEMBL;Acc:F7IF39]
ENSCJAG00000005942	KNOWN	protein_coding	PAX6	chromosome:C_jacchus3.2.1:11:1:130397257:1	94947034	94980806	R	Paired box protein Pax-6 isoform b {ECO:0000313|EMBL:JAB16631.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011009}  [Source:UniProtKB/TrEMBL;Acc:F7IN51]
ENSCJAG00000016978	NOVEL	pseudogene	ENSCJAG00000016978	chromosome:C_jacchus3.2.1:19:1:49578535:1	26274086	26274335	D	<no descrition>
ENSCJAG00000016975	NOVEL	pseudogene	ENSCJAG00000016975	chromosome:C_jacchus3.2.1:19:1:49578535:1	26248165	26248543	D	<no descrition>
ENSCJAG00000014647	KNOWN_BY_PROJECTION	protein_coding	CCDC158	chromosome:C_jacchus3.2.1:3:1:190850796:1	118229478	118351172	D	coiled-coil domain containing 158 [Source:HGNC Symbol;Acc:HGNC:26374]
ENSCJAG00000006947	KNOWN_BY_PROJECTION	protein_coding	SPCS1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28479213	28481533	D	signal peptidase complex subunit 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:23401]
ENSCJAG00000016921	KNOWN_BY_PROJECTION	protein_coding	PLEKHA6	chromosome:C_jacchus3.2.1:19:1:49578535:1	26090480	26234123	R	pleckstrin homology domain containing, family A member 6 [Source:HGNC Symbol;Acc:HGNC:17053]
ENSCJAG00000016909	KNOWN_BY_PROJECTION	protein_coding	GOLT1A	chromosome:C_jacchus3.2.1:19:1:49578535:1	26064732	26082085	R	golgi transport 1A [Source:HGNC Symbol;Acc:HGNC:24766]
ENSCJAG00000006883	KNOWN	protein_coding	GLT8D1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28469196	28479135	R	Glycosyltransferase 8 domain-containing protein 1 {ECO:0000313|EMBL:JAB04448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012852}  [Source:UniProtKB/TrEMBL;Acc:F6U7E1]
ENSCJAG00000001585	KNOWN	protein_coding	COPS2	chromosome:C_jacchus3.2.1:10:1:132174527:1	26328852	26364112	R	COP9 signalosome complex subunit 2 isoform 2 {ECO:0000313|EMBL:JAB06772.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050854}  [Source:UniProtKB/TrEMBL;Acc:F7FMZ1]
ENSCJAG00000016902	KNOWN_BY_PROJECTION	protein_coding	KISS1	chromosome:C_jacchus3.2.1:19:1:49578535:1	26059005	26061673	R	KiSS-1 metastasis-suppressor [Source:HGNC Symbol;Acc:HGNC:6341]
ENSCJAG00000019162	KNOWN_BY_PROJECTION	protein_coding	E2F7	chromosome:C_jacchus3.2.1:9:1:124281992:1	66755636	66801391	R	E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]
ENSCJAG00000010576	KNOWN	protein_coding	TRMT10B	chromosome:C_jacchus3.2.1:1:1:210400635:1	139713403	139727107	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019520}; tRNA methyltransferase 10 homolog B {ECO:0000313|EMBL:JAB08826.1}  [Source:UniProtKB/TrEMBL;Acc:F6RJI7]
ENSCJAG00000016857	KNOWN	protein_coding	REN	chromosome:C_jacchus3.2.1:19:1:49578535:1	26019170	26033174	R	Renin  [Source:UniProtKB/Swiss-Prot;Acc:Q9TSZ1]
ENSCJAG00000010556	KNOWN_BY_PROJECTION	protein_coding	FRMPD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	139628013	139690219	D	FERM and PDZ domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29159]
ENSCJAG00000010552	NOVEL	pseudogene	ENSCJAG00000010552	chromosome:C_jacchus3.2.1:1:1:210400635:1	139550253	139550976	R	<no descrition>
ENSCJAG00000005994	KNOWN	protein_coding	ELP4	chromosome:C_jacchus3.2.1:11:1:130397257:1	94670059	94946013	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011062}  [Source:UniProtKB/TrEMBL;Acc:F7IG29]
ENSCJAG00000010547	KNOWN	protein_coding	ENSCJAG00000010547	chromosome:C_jacchus3.2.1:1:1:210400635:1	139495696	139500856	R	Mitochondrial import receptor subunit TOM5 homolog isoform 1 {ECO:0000313|EMBL:JAB43711.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019452}  [Source:UniProtKB/TrEMBL;Acc:F6TDI3]
ENSCJAG00000019153	KNOWN	protein_coding	CSRP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	66551609	66569916	R	Cysteine and glycine-rich protein 2 {ECO:0000313|EMBL:JAB04070.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035560}  [Source:UniProtKB/TrEMBL;Acc:F7EGS6]
ENSCJAG00000031723	NOVEL	protein_coding	ENSCJAG00000031723	chromosome:C_jacchus3.2.1:1:1:210400635:1	139526442	139528891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047817}  [Source:UniProtKB/TrEMBL;Acc:F7H7K8]
ENSCJAG00000014716	KNOWN_BY_PROJECTION	protein_coding	SHROOM3	chromosome:C_jacchus3.2.1:3:1:190850796:1	117834841	118203251	R	shroom family member 3 [Source:HGNC Symbol;Acc:HGNC:30422]
ENSCJAG00000006864	KNOWN	protein_coding	GNL3	chromosome:C_jacchus3.2.1:15:1:98464013:1	28460451	28469111	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012734}  [Source:UniProtKB/TrEMBL;Acc:F6S302]
ENSCJAG00000019294	KNOWN	protein_coding	C2ORF42	chromosome:C_jacchus3.2.1:14:1:108792865:1	36687557	36722991	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035832}; Uncharacterized protein C2orf42 {ECO:0000313|EMBL:JAB07845.1}  [Source:UniProtKB/TrEMBL;Acc:F7H7Q5]
ENSCJAG00000016828	KNOWN	protein_coding	ETNK2	chromosome:C_jacchus3.2.1:19:1:49578535:1	25995596	26016305	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050228}  [Source:UniProtKB/TrEMBL;Acc:F7FC60]
ENSCJAG00000010535	KNOWN	protein_coding	FBXO10	chromosome:C_jacchus3.2.1:1:1:210400635:1	139434228	139479551	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019448}  [Source:UniProtKB/TrEMBL;Acc:F6TEB6]
ENSCJAG00000006042	KNOWN	protein_coding	IMMP1L	chromosome:C_jacchus3.2.1:11:1:130397257:1	94599411	94669884	R	Mitochondrial inner membrane protease subunit 1 {ECO:0000313|EMBL:JAB01806.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011107}  [Source:UniProtKB/TrEMBL;Acc:F7I6I9]
ENSCJAG00000031373	NOVEL	pseudogene	ENSCJAG00000031373	chromosome:C_jacchus3.2.1:1:1:210400635:1	139431472	139431652	R	<no descrition>
ENSCJAG00000014737	NOVEL	pseudogene	ENSCJAG00000014737	chromosome:C_jacchus3.2.1:3:1:190850796:1	117728342	117729456	D	<no descrition>
ENSCJAG00000006051	KNOWN_BY_PROJECTION	protein_coding	DNAJC24	chromosome:C_jacchus3.2.1:11:1:130397257:1	94540100	94597520	D	DnaJ (Hsp40) homolog, subfamily C, member 24 [Source:HGNC Symbol;Acc:HGNC:26979]
ENSCJAG00000014739	KNOWN_BY_PROJECTION	protein_coding	SOWAHB	chromosome:C_jacchus3.2.1:3:1:190850796:1	117705586	117707781	D	sosondowah ankyrin repeat domain family member B [Source:HGNC Symbol;Acc:HGNC:32958]
ENSCJAG00000006055	NOVEL	protein_coding	ENSCJAG00000006055	chromosome:C_jacchus3.2.1:11:1:130397257:1	94427509	94495863	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042979}  [Source:UniProtKB/TrEMBL;Acc:F6UFD6]
ENSCJAG00000001637	KNOWN_BY_PROJECTION	protein_coding	SECISBP2L	chromosome:C_jacchus3.2.1:10:1:132174527:1	26205852	26263865	R	SECIS binding protein 2-like [Source:HGNC Symbol;Acc:HGNC:28997]
ENSCJAG00000006091	NOVEL	pseudogene	ENSCJAG00000006091	chromosome:C_jacchus3.2.1:11:1:130397257:1	94230589	94231375	R	<no descrition>
ENSCJAG00000014744	KNOWN	protein_coding	SEPT11	chromosome:C_jacchus3.2.1:3:1:190850796:1	117563199	117651486	R	Septin-11 {ECO:0000313|EMBL:JAB10235.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027184}  [Source:UniProtKB/TrEMBL;Acc:F7H553]
ENSCJAG00000010512	KNOWN	protein_coding	POLR1E	chromosome:C_jacchus3.2.1:1:1:210400635:1	139409871	139427297	D	DNA-directed RNA polymerase I subunit RPA49 {ECO:0000313|EMBL:JAB03467.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019427}  [Source:UniProtKB/TrEMBL;Acc:F6U0F9]
ENSCJAG00000010502	KNOWN	protein_coding	ZBTB5	chromosome:C_jacchus3.2.1:1:1:210400635:1	139344855	139384152	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019373}; Zinc finger and BTB domain-containing protein 5 {ECO:0000313|EMBL:JAB07220.1}  [Source:UniProtKB/TrEMBL;Acc:F6QDR1]
ENSCJAG00000006060	KNOWN_BY_PROJECTION	protein_coding	DCDC1	chromosome:C_jacchus3.2.1:11:1:130397257:1	93968776	94049526	R	doublecortin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20625]
ENSCJAG00000019278	KNOWN	protein_coding	TIA1	chromosome:C_jacchus3.2.1:14:1:108792865:1	36615213	36657309	D	Nucleolysin TIA-1 isoform p40 isoform 2 {ECO:0000313|EMBL:JAB06562.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035803}  [Source:UniProtKB/TrEMBL;Acc:F7HI78]
ENSCJAG00000006635	KNOWN_BY_PROJECTION	protein_coding	PBRM1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28305545	28454546	R	polybromo 1 [Source:HGNC Symbol;Acc:HGNC:30064]
ENSCJAG00000006095	KNOWN	protein_coding	MPPED2	chromosome:C_jacchus3.2.1:11:1:130397257:1	93510960	93687598	R	Metallophosphoesterase MPPED2 isoform 1 {ECO:0000313|EMBL:JAB04582.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011218}  [Source:UniProtKB/TrEMBL;Acc:F7ISP6]
ENSCJAG00000006109	KNOWN	protein_coding	ENSCJAG00000006109	chromosome:C_jacchus3.2.1:11:1:130397257:1	93422308	93436699	D	ARL14 effector protein {ECO:0000313|EMBL:JAB04395.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011239}  [Source:UniProtKB/TrEMBL;Acc:F7IQE7]
ENSCJAG00000019075	KNOWN_BY_PROJECTION	protein_coding	ZDHHC17	chromosome:C_jacchus3.2.1:9:1:124281992:1	66437866	66546875	D	zinc finger, DHHC-type containing 17 [Source:HGNC Symbol;Acc:HGNC:18412]
ENSCJAG00000006121	KNOWN_BY_PROJECTION	protein_coding	FSHB	chromosome:C_jacchus3.2.1:11:1:130397257:1	93318553	93322793	D	follicle stimulating hormone, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:3964]
ENSCJAG00000019304	KNOWN_BY_PROJECTION	protein_coding	PCYOX1	chromosome:C_jacchus3.2.1:14:1:108792865:1	36590458	36685034	R	prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
ENSCJAG00000019071	NOVEL	protein_coding	ENSCJAG00000019071	chromosome:C_jacchus3.2.1:9:1:124281992:1	66431883	66433176	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035403}  [Source:UniProtKB/TrEMBL;Acc:F7ISI8]
ENSCJAG00000019068	NOVEL	pseudogene	ENSCJAG00000019068	chromosome:C_jacchus3.2.1:9:1:124281992:1	66416398	66416752	D	<no descrition>
ENSCJAG00000031785	NOVEL	pseudogene	ENSCJAG00000031785	chromosome:C_jacchus3.2.1:9:1:124281992:1	66266844	66267238	R	<no descrition>
ENSCJAG00000010474	KNOWN_BY_PROJECTION	protein_coding	GRHPR	chromosome:C_jacchus3.2.1:1:1:210400635:1	139319477	139340985	D	glyoxylate reductase/hydroxypyruvate reductase [Source:HGNC Symbol;Acc:HGNC:4570]
ENSCJAG00000006634	KNOWN	protein_coding	SMIM4	chromosome:C_jacchus3.2.1:15:1:98464013:1	28295092	28299100	D	UPF0640 protein C3orf78 {ECO:0000313|EMBL:JAB01598.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012240}  [Source:UniProtKB/TrEMBL;Acc:F7GMZ9]
ENSCJAG00000015575	KNOWN	protein_coding	DEF6	chromosome:C_jacchus3.2.1:4:1:171630274:1	36228263	36395752	D	Ribosomal protein {ECO:0000256|RuleBase:RU000659}  [Source:UniProtKB/TrEMBL;Acc:F6XC43]
ENSCJAG00000004802	KNOWN_BY_PROJECTION	protein_coding	DNAH9	chromosome:C_jacchus3.2.1:5:1:159171411:1	69577182	70156783	R	dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
ENSCJAG00000006610	KNOWN_BY_PROJECTION	protein_coding	NT5DC2	chromosome:C_jacchus3.2.1:15:1:98464013:1	28283167	28293091	R	5'-nucleotidase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25717]
ENSCJAG00000010465	KNOWN	protein_coding	ZCCHC7	chromosome:C_jacchus3.2.1:1:1:210400635:1	139033865	139258752	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019316}  [Source:UniProtKB/TrEMBL;Acc:F6RWA1]
ENSCJAG00000007163	KNOWN_BY_PROJECTION	protein_coding	JMJD1C	chromosome:C_jacchus3.2.1:12:1:121768101:1	60890796	61214158	D	jumonji domain containing 1C [Source:HGNC Symbol;Acc:HGNC:12313]
ENSCJAG00000006135	NOVEL	protein_coding	ENSCJAG00000006135	chromosome:C_jacchus3.2.1:11:1:130397257:1	92979780	92982227	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046123}  [Source:UniProtKB/TrEMBL;Acc:F6X0H4]
ENSCJAG00000006129	KNOWN	protein_coding	KCNA4	chromosome:C_jacchus3.2.1:11:1:130397257:1	93068560	93075032	R	Potassium voltage-gated channel subfamily A member 4 {ECO:0000313|EMBL:JAB22660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011257}  [Source:UniProtKB/TrEMBL;Acc:F7IQA3]
ENSCJAG00000020000	KNOWN	protein_coding	DDB2	chromosome:C_jacchus3.2.1:11:1:130397257:1	110483572	110515620	D	DNA damage-binding protein 2 {ECO:0000313|EMBL:JAB07791.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037221}  [Source:UniProtKB/TrEMBL;Acc:F6X8V8]
ENSCJAG00000033225	NOVEL	protein_coding	ENSCJAG00000033225	chromosome:C_jacchus3.2.1:19:1:49578535:1	32014278	32022216	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045854}  [Source:UniProtKB/TrEMBL;Acc:F6Q1H5]
ENSCJAG00000015918	NOVEL	pseudogene	ENSCJAG00000015918	chromosome:C_jacchus3.2.1:15:1:98464013:1	60705502	60705896	D	<no descrition>
ENSCJAG00000019313	KNOWN	protein_coding	ENSCJAG00000019313	chromosome:C_jacchus3.2.1:14:1:108792865:1	36576369	36588694	D	Small nuclear ribonucleoprotein G {ECO:0000313|EMBL:JAB25095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035851}  [Source:UniProtKB/TrEMBL;Acc:F7H2A6]
ENSCJAG00000006137	NOVEL	protein_coding	ENSCJAG00000006137	chromosome:C_jacchus3.2.1:11:1:130397257:1	92783554	92784346	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011270}  [Source:UniProtKB/TrEMBL;Acc:F7IMY5]
ENSCJAG00000011028	NOVEL	protein_coding	ENSCJAG00000011028	chromosome:C_jacchus3.2.1:11:1:130397257:1	91405310	91406392	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045472}  [Source:UniProtKB/TrEMBL;Acc:F6Q3Z3]
ENSCJAG00000019314	NOVEL	protein_coding	ENSCJAG00000019314	chromosome:C_jacchus3.2.1:14:1:108792865:1	36569379	36574684	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047356}  [Source:UniProtKB/TrEMBL;Acc:F7HWZ9]
ENSCJAG00000033303	NOVEL	protein_coding	ENSCJAG00000033303	chromosome:C_jacchus3.2.1:14:1:108792865:1	36403746	36404064	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048057}  [Source:UniProtKB/TrEMBL;Acc:F7FC00]
ENSCJAG00000006142	KNOWN_BY_PROJECTION	protein_coding	METTL15	chromosome:C_jacchus3.2.1:11:1:130397257:1	91223209	91454831	D	methyltransferase like 15 [Source:HGNC Symbol;Acc:HGNC:26606]
ENSCJAG00000001673	KNOWN_BY_PROJECTION	protein_coding	SHC4	chromosome:C_jacchus3.2.1:10:1:132174527:1	26024995	26177364	R	SHC (Src homology 2 domain containing) family, member 4 [Source:HGNC Symbol;Acc:HGNC:16743]
ENSCJAG00000006149	KNOWN_BY_PROJECTION	protein_coding	KIF18A	chromosome:C_jacchus3.2.1:11:1:130397257:1	91133131	91223136	R	kinesin family member 18A [Source:HGNC Symbol;Acc:HGNC:29441]
ENSCJAG00000019316	KNOWN	protein_coding	TGFA	chromosome:C_jacchus3.2.1:14:1:108792865:1	36292498	36395852	D	Protransforming growth factor alpha isoform 2 preproprotein {ECO:0000313|EMBL:JAB10662.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035872}  [Source:UniProtKB/TrEMBL;Acc:F7GX07]
ENSCJAG00000006190	NOVEL	pseudogene	ENSCJAG00000006190	chromosome:C_jacchus3.2.1:11:1:130397257:1	90941406	90941874	D	<no descrition>
ENSCJAG00000006191	KNOWN_BY_PROJECTION	protein_coding	BDNF	chromosome:C_jacchus3.2.1:11:1:130397257:1	90748389	90815011	R	brain-derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:1033]
ENSCJAG00000014768	KNOWN	protein_coding	CCNI	chromosome:C_jacchus3.2.1:3:1:190850796:1	117525856	117551604	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046030}  [Source:UniProtKB/TrEMBL;Acc:F6ZUD1]
ENSCJAG00000015519	KNOWN	protein_coding	ZNF76	chromosome:C_jacchus3.2.1:4:1:171630274:1	36180581	36215019	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028673}; Zinc finger protein 76 {ECO:0000313|EMBL:JAB28188.1}  [Source:UniProtKB/TrEMBL;Acc:F6V1I9]
ENSCJAG00000016794	KNOWN_BY_PROJECTION	protein_coding	SOX13	chromosome:C_jacchus3.2.1:19:1:49578535:1	25919455	25992073	D	SRY (sex determining region Y)-box 13 [Source:HGNC Symbol;Acc:HGNC:11192]
ENSCJAG00000007245	KNOWN	protein_coding	REEP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	60704042	60820720	R	Receptor expression-enhancing protein 3 {ECO:0000313|EMBL:JAB08676.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013501}  [Source:UniProtKB/TrEMBL;Acc:F6ZYR3]
ENSCJAG00000014787	KNOWN_BY_PROJECTION	protein_coding	ZSCAN5D	chromosome:C_jacchus3.2.1:3:1:190850796:1	117496697	117498439	R	zinc finger and SCAN domain containing 5D [Source:HGNC Symbol;Acc:HGNC:37706]
ENSCJAG00000007256	NOVEL	protein_coding	ENSCJAG00000007256	chromosome:C_jacchus3.2.1:12:1:121768101:1	60702722	60774942	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046324}  [Source:UniProtKB/TrEMBL;Acc:F6Y968]
ENSCJAG00000031881	NOVEL	protein_coding	ENSCJAG00000031881	chromosome:C_jacchus3.2.1:12:1:121768101:1	59433110	59433984	R	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F7F796]
ENSCJAG00000010379	KNOWN_BY_PROJECTION	protein_coding	PAX5	chromosome:C_jacchus3.2.1:1:1:210400635:1	138754316	138947474	R	paired box 5 [Source:HGNC Symbol;Acc:HGNC:8619]
ENSCJAG00000019359	KNOWN	protein_coding	LRRTM3	chromosome:C_jacchus3.2.1:12:1:121768101:1	57193988	57374879	R	Leucine-rich repeat transmembrane neuronal protein 3 {ECO:0000313|EMBL:JAB16983.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035949}  [Source:UniProtKB/TrEMBL;Acc:F7EUG8]
ENSCJAG00000019354	KNOWN_BY_PROJECTION	protein_coding	CTNNA3	chromosome:C_jacchus3.2.1:12:1:121768101:1	56625607	56750834	D	catenin (cadherin-associated protein), alpha 3 [Source:HGNC Symbol;Acc:HGNC:2511]
ENSCJAG00000019351	NOVEL	pseudogene	ENSCJAG00000019351	chromosome:C_jacchus3.2.1:12:1:121768101:1	56512406	56512884	R	<no descrition>
ENSCJAG00000006484	KNOWN_BY_PROJECTION	protein_coding	STAB1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28251025	28283299	D	stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
ENSCJAG00000014789	KNOWN	protein_coding	CCNG2	chromosome:C_jacchus3.2.1:3:1:190850796:1	117426005	117445436	R	Cyclin-G2 {ECO:0000313|EMBL:JAB07526.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046158}  [Source:UniProtKB/TrEMBL;Acc:F6VUX7]
ENSCJAG00000016792	NOVEL	pseudogene	ENSCJAG00000016792	chromosome:C_jacchus3.2.1:19:1:49578535:1	25868756	25869136	R	<no descrition>
ENSCJAG00000006735	NOVEL	protein_coding	ENSCJAG00000006735	chromosome:C_jacchus3.2.1:19:1:49578535:1	25619582	25629178	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012442}  [Source:UniProtKB/TrEMBL;Acc:F7FA16]
ENSCJAG00000019331	KNOWN	protein_coding	ADD2	chromosome:C_jacchus3.2.1:14:1:108792865:1	36111805	36171446	D	Beta-adducin isoform a {ECO:0000313|EMBL:JAB14735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035932}  [Source:UniProtKB/TrEMBL;Acc:F7F7N8]
ENSCJAG00000019345	KNOWN	protein_coding	DNAJC12	chromosome:C_jacchus3.2.1:12:1:121768101:1	56465207	56509604	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035919}  [Source:UniProtKB/TrEMBL;Acc:F7FYY0]
ENSCJAG00000014811	NOVEL	protein_coding	ENSCJAG00000014811	chromosome:C_jacchus3.2.1:3:1:190850796:1	117368608	117374183	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027287}  [Source:UniProtKB/TrEMBL;Acc:F7FEH1]
ENSCJAG00000019358	NOVEL	protein_coding	ENSCJAG00000019358	chromosome:C_jacchus3.2.1:14:1:108792865:1	36024881	36040263	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035941}  [Source:UniProtKB/TrEMBL;Acc:F7EUL2]
ENSCJAG00000004752	KNOWN	protein_coding	MAP2K4	chromosome:C_jacchus3.2.1:5:1:159171411:1	69539620	69666275	R	Dual specificity mitogen-activated protein kinase kinase 4 {ECO:0000313|EMBL:JAB06260.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008718}  [Source:UniProtKB/TrEMBL;Acc:F7HMH7]
ENSCJAG00000014827	NOVEL	protein_coding	ENSCJAG00000014827	chromosome:C_jacchus3.2.1:3:1:190850796:1	117365525	117368050	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027303}  [Source:UniProtKB/TrEMBL;Acc:F7E9Z6]
ENSCJAG00000019365	KNOWN_BY_PROJECTION	protein_coding	CLEC4F	chromosome:C_jacchus3.2.1:14:1:108792865:1	35996934	36009380	D	C-type lectin domain family 4, member F [Source:HGNC Symbol;Acc:HGNC:25357]
ENSCJAG00000014832	NOVEL	protein_coding	ENSCJAG00000014832	chromosome:C_jacchus3.2.1:3:1:190850796:1	117360394	117362985	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027307}  [Source:UniProtKB/TrEMBL;Acc:F7E9X8]
ENSCJAG00000014836	NOVEL	protein_coding	ENSCJAG00000014836	chromosome:C_jacchus3.2.1:3:1:190850796:1	117347141	117351340	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027311}  [Source:UniProtKB/TrEMBL;Acc:F7E9K6]
ENSCJAG00000019371	KNOWN_BY_PROJECTION	protein_coding	CD207	chromosome:C_jacchus3.2.1:14:1:108792865:1	35984504	35989583	D	CD207 molecule, langerin [Source:HGNC Symbol;Acc:HGNC:17935]
ENSCJAG00000014839	KNOWN_BY_PROJECTION	protein_coding	CXCL13	chromosome:C_jacchus3.2.1:3:1:190850796:1	116975025	117042171	R	chemokine (C-X-C motif) ligand 13 [Source:HGNC Symbol;Acc:HGNC:10639]
ENSCJAG00000031540	KNOWN_BY_PROJECTION	protein_coding	VAX2	chromosome:C_jacchus3.2.1:14:1:108792865:1	35894506	35926718	R	ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]
ENSCJAG00000006671	NOVEL	protein_coding	ENSCJAG00000006671	chromosome:C_jacchus3.2.1:19:1:49578535:1	25554555	25610087	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012433}  [Source:UniProtKB/TrEMBL;Acc:F7FNL6]
ENSCJAG00000006208	KNOWN_BY_PROJECTION	protein_coding	LGR4	chromosome:C_jacchus3.2.1:11:1:130397257:1	90464569	90577358	R	leucine-rich repeat containing G protein-coupled receptor 4 [Source:HGNC Symbol;Acc:HGNC:13299]
ENSCJAG00000019318	KNOWN_BY_PROJECTION	protein_coding	SIRT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	56376124	56416525	R	sirtuin 1 [Source:HGNC Symbol;Acc:HGNC:14929]
ENSCJAG00000006659	KNOWN_BY_PROJECTION	protein_coding	LAX1	chromosome:C_jacchus3.2.1:19:1:49578535:1	25528843	25540322	D	lymphocyte transmembrane adaptor 1 [Source:HGNC Symbol;Acc:HGNC:26005]
ENSCJAG00000006457	KNOWN	protein_coding	NISCH	chromosome:C_jacchus3.2.1:15:1:98464013:1	28210056	28248377	D	Nischarin {ECO:0000313|EMBL:JAB22350.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011944}  [Source:UniProtKB/TrEMBL;Acc:F7GBE4]
ENSCJAG00000006654	NOVEL	protein_coding	ENSCJAG00000006654	chromosome:C_jacchus3.2.1:19:1:49578535:1	25500788	25502118	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012275}  [Source:UniProtKB/TrEMBL;Acc:F7FQ68]
ENSCJAG00000001706	KNOWN_BY_PROJECTION	protein_coding	CEP152	chromosome:C_jacchus3.2.1:10:1:132174527:1	25925715	26011443	R	centrosomal protein 152kDa [Source:HGNC Symbol;Acc:HGNC:29298]
ENSCJAG00000035474	NOVEL	pseudogene	ENSCJAG00000035474	chromosome:C_jacchus3.2.1:12:1:121768101:1	56247163	56248307	R	<no descrition>
ENSCJAG00000006253	KNOWN_BY_PROJECTION	protein_coding	CCDC34	chromosome:C_jacchus3.2.1:11:1:130397257:1	90360895	90461966	R	coiled-coil domain containing 34 [Source:HGNC Symbol;Acc:HGNC:25079]
ENSCJAG00000004683	KNOWN_BY_PROJECTION	protein_coding	MYOCD	chromosome:C_jacchus3.2.1:5:1:159171411:1	68862628	68969810	R	myocardin [Source:HGNC Symbol;Acc:HGNC:16067]
ENSCJAG00000014846	KNOWN	protein_coding	CNOT6L	chromosome:C_jacchus3.2.1:3:1:190850796:1	116757252	116853453	D	CCR4-NOT transcription complex subunit 6-like {ECO:0000313|EMBL:JAB12927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027376}  [Source:UniProtKB/TrEMBL;Acc:F7HAD0]
ENSCJAG00000006265	KNOWN_BY_PROJECTION	protein_coding	BBOX1	chromosome:C_jacchus3.2.1:11:1:130397257:1	90128690	90214182	D	butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 [Source:HGNC Symbol;Acc:HGNC:964]
ENSCJAG00000032965	NOVEL	protein_coding	ENSCJAG00000032965	chromosome:C_jacchus3.2.1:19:1:49578535:1	25447313	25459493	R	<no descrition>
ENSCJAG00000006336	KNOWN_BY_PROJECTION	protein_coding	SLC5A12	chromosome:C_jacchus3.2.1:11:1:130397257:1	89748324	89805911	R	solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 [Source:HGNC Symbol;Acc:HGNC:28750]
ENSCJAG00000006439	KNOWN	protein_coding	TNNC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28206020	28209018	R	Troponin C, slow skeletal and cardiac muscles {ECO:0000313|EMBL:JAB01638.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011889}  [Source:UniProtKB/TrEMBL;Acc:F7H7L0]
ENSCJAG00000015443	KNOWN_BY_PROJECTION	protein_coding	SCUBE3	chromosome:C_jacchus3.2.1:4:1:171630274:1	36134466	36172624	D	signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
ENSCJAG00000006359	KNOWN_BY_PROJECTION	protein_coding	MUC15	chromosome:C_jacchus3.2.1:11:1:130397257:1	89648484	89661917	R	mucin 15, cell surface associated [Source:HGNC Symbol;Acc:HGNC:14956]
ENSCJAG00000006415	KNOWN_BY_PROJECTION	protein_coding	SEMA3G	chromosome:C_jacchus3.2.1:15:1:98464013:1	28188397	28198832	R	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
ENSCJAG00000004605	KNOWN	protein_coding	ARHGAP44	chromosome:C_jacchus3.2.1:5:1:159171411:1	68617717	68827953	R	Rho GTPase-activating protein 44 {ECO:0000313|EMBL:JAB22062.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048708}  [Source:UniProtKB/TrEMBL;Acc:F6R644]
ENSCJAG00000006361	KNOWN_BY_PROJECTION	protein_coding	PHF7	chromosome:C_jacchus3.2.1:15:1:98464013:1	28159458	28175002	D	PHD finger protein 7 [Source:HGNC Symbol;Acc:HGNC:18458]
ENSCJAG00000001055	KNOWN	protein_coding	OSBPL8	chromosome:C_jacchus3.2.1:9:1:124281992:1	66020441	66211281	R	Oxysterol-binding protein {ECO:0000256|RuleBase:RU003845}  [Source:UniProtKB/TrEMBL;Acc:F6YC58]
ENSCJAG00000019383	KNOWN	protein_coding	ATP6V1B1	chromosome:C_jacchus3.2.1:14:1:108792865:1	35866561	35891895	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036008}; V-type proton ATPase subunit B, kidney isoform {ECO:0000313|EMBL:JAB02060.1}  [Source:UniProtKB/TrEMBL;Acc:F7GYR8]
ENSCJAG00000006322	KNOWN	protein_coding	BAP1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28150124	28159053	R	Ubiquitin carboxyl-terminal hydrolase BAP1 {ECO:0000313|EMBL:JAB02851.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011709}  [Source:UniProtKB/TrEMBL;Acc:F7GM69]
ENSCJAG00000010362	KNOWN_BY_PROJECTION	protein_coding	MELK	chromosome:C_jacchus3.2.1:1:1:210400635:1	138476210	138583315	D	maternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]
ENSCJAG00000019374	KNOWN_BY_PROJECTION	protein_coding	ANKRD53	chromosome:C_jacchus3.2.1:14:1:108792865:1	35853746	35859910	R	ankyrin repeat domain 53 [Source:HGNC Symbol;Acc:HGNC:25691]
ENSCJAG00000001113	KNOWN	protein_coding	BBS10	chromosome:C_jacchus3.2.1:9:1:124281992:1	66013985	66017055	R	Bardet-Biedl syndrome 10 protein {ECO:0000313|EMBL:JAB06610.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001913}  [Source:UniProtKB/TrEMBL;Acc:F6YBY1]
ENSCJAG00000019392	KNOWN	protein_coding	TEX261	chromosome:C_jacchus3.2.1:14:1:108792865:1	35843566	35851075	D	Protein TEX261 {ECO:0000313|EMBL:JAB17097.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036018}  [Source:UniProtKB/TrEMBL;Acc:F7GTP6]
ENSCJAG00000019402	NOVEL	pseudogene	ENSCJAG00000019402	chromosome:C_jacchus3.2.1:14:1:108792865:1	35823486	35823889	R	<no descrition>
ENSCJAG00000014869	KNOWN_BY_PROJECTION	protein_coding	MRPL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	116599508	116694963	R	mitochondrial ribosomal protein L1 [Source:HGNC Symbol;Acc:HGNC:14275]
ENSCJAG00000014966	NOVEL	protein_coding	ENSCJAG00000014966	chromosome:C_jacchus3.2.1:3:1:190850796:1	116059194	116061087	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027553}  [Source:UniProtKB/TrEMBL;Acc:F7DDB0]
ENSCJAG00000019403	KNOWN_BY_PROJECTION	protein_coding	NAGK	chromosome:C_jacchus3.2.1:14:1:108792865:1	35810497	35821269	R	N-acetylglucosamine kinase [Source:HGNC Symbol;Acc:HGNC:17174]
ENSCJAG00000019422	NOVEL	protein_coding	ENSCJAG00000019422	chromosome:C_jacchus3.2.1:14:1:108792865:1	35757771	35784286	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036053}  [Source:UniProtKB/TrEMBL;Acc:F7G3A4]
ENSCJAG00000006561	KNOWN	protein_coding	ATP2B4	chromosome:C_jacchus3.2.1:19:1:49578535:1	25378672	25513278	D	Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146}  [Source:UniProtKB/TrEMBL;Acc:F7G2D7]
ENSCJAG00000006182	KNOWN_BY_PROJECTION	protein_coding	DNAH1	chromosome:C_jacchus3.2.1:15:1:98464013:1	28067222	28149593	D	dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
ENSCJAG00000010356	NOVEL	protein_coding	ENSCJAG00000010356	chromosome:C_jacchus3.2.1:1:1:210400635:1	138397016	138417696	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019075}  [Source:UniProtKB/TrEMBL;Acc:F6T5U9]
ENSCJAG00000001115	KNOWN	protein_coding	NAP1L1	chromosome:C_jacchus3.2.1:9:1:124281992:1	65717634	65756198	R	Nucleosome assembly protein 1-like 1 {ECO:0000313|EMBL:JAB19193.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049251}  [Source:UniProtKB/TrEMBL;Acc:F6UWV5]
ENSCJAG00000006558	KNOWN_BY_PROJECTION	protein_coding	OPTC	chromosome:C_jacchus3.2.1:19:1:49578535:1	25224289	25228151	D	opticin [Source:HGNC Symbol;Acc:HGNC:8158]
ENSCJAG00000001735	KNOWN	protein_coding	FBN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	25584622	25822755	R	Fibrillin-1 {ECO:0000313|EMBL:JAB22477.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003235}  [Source:UniProtKB/TrEMBL;Acc:F7GUT7]
ENSCJAG00000006543	KNOWN	protein_coding	PRELP	chromosome:C_jacchus3.2.1:19:1:49578535:1	25202356	25218310	D	Prolargin {ECO:0000313|EMBL:JAB11179.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012081}  [Source:UniProtKB/TrEMBL;Acc:F7GFP1]
ENSCJAG00000006520	KNOWN	protein_coding	FMOD	chromosome:C_jacchus3.2.1:19:1:49578535:1	25062385	25072847	R	Fibromodulin {ECO:0000313|EMBL:JAB33259.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012045}  [Source:UniProtKB/TrEMBL;Acc:F7H3T3]
ENSCJAG00000006514	KNOWN	protein_coding	BTG2	chromosome:C_jacchus3.2.1:19:1:49578535:1	25021990	25024080	D	Protein BTG2 {ECO:0000313|EMBL:JAB05774.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012022}  [Source:UniProtKB/TrEMBL;Acc:F7H971]
ENSCJAG00000006285	KNOWN_BY_PROJECTION	protein_coding	ANO3	chromosome:C_jacchus3.2.1:11:1:130397257:1	89288527	89740458	D	anoctamin 3 [Source:HGNC Symbol;Acc:HGNC:14004]
ENSCJAG00000006114	KNOWN	protein_coding	WDR82	chromosome:C_jacchus3.2.1:15:1:98464013:1	28000942	28021956	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011300}; WD repeat-containing protein 82 {ECO:0000313|EMBL:JAB04121.1}  [Source:UniProtKB/TrEMBL;Acc:F7IDG8]
ENSCJAG00000004542	KNOWN_BY_PROJECTION	protein_coding	ELAC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	68593345	68616941	D	elaC ribonuclease Z 2 [Source:HGNC Symbol;Acc:HGNC:14198]
ENSCJAG00000001813	KNOWN	protein_coding	DUT	chromosome:C_jacchus3.2.1:10:1:132174527:1	25476550	25493775	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003251}  [Source:UniProtKB/TrEMBL;Acc:F7GPR6]
ENSCJAG00000006090	KNOWN_BY_PROJECTION	protein_coding	PPM1M	chromosome:C_jacchus3.2.1:15:1:98464013:1	27989574	27994306	D	protein phosphatase, Mg2+/Mn2+ dependent, 1M [Source:HGNC Symbol;Acc:HGNC:26506]
ENSCJAG00000019423	KNOWN	protein_coding	MPHOSPH10	chromosome:C_jacchus3.2.1:14:1:108792865:1	35739008	35757676	R	U3 small nucleolar ribonucleoprotein MPP10 {ECO:0000313|EMBL:JAB08850.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036072}  [Source:UniProtKB/TrEMBL;Acc:F7FQQ8]
ENSCJAG00000004534	KNOWN_BY_PROJECTION	protein_coding	HS3ST3A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	67999078	68221145	D	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 [Source:HGNC Symbol;Acc:HGNC:5196]
ENSCJAG00000001172	KNOWN_BY_PROJECTION	protein_coding	PHLDA1	chromosome:C_jacchus3.2.1:9:1:124281992:1	65702975	65704844	R	pleckstrin homology-like domain, family A, member 1 [Source:HGNC Symbol;Acc:HGNC:8933]
ENSCJAG00000006364	KNOWN	protein_coding	LUZP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	87765398	88353947	D	Leucine zipper protein 2 isoform 1 {ECO:0000313|EMBL:JAB14657.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011727}  [Source:UniProtKB/TrEMBL;Acc:F7GM22]
ENSCJAG00000019432	NOVEL	pseudogene	ENSCJAG00000019432	chromosome:C_jacchus3.2.1:14:1:108792865:1	35729380	35730067	D	<no descrition>
ENSCJAG00000019433	KNOWN	protein_coding	PAIP2B	chromosome:C_jacchus3.2.1:14:1:108792865:1	35691774	35706930	D	Polyadenylate-binding protein-interacting protein 2B {ECO:0000313|EMBL:JAB03716.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036075}  [Source:UniProtKB/TrEMBL;Acc:F7FQN0]
ENSCJAG00000019435	NOVEL	pseudogene	ENSCJAG00000019435	chromosome:C_jacchus3.2.1:14:1:108792865:1	35579097	35579810	R	<no descrition>
ENSCJAG00000006372	KNOWN	protein_coding	SVIP	chromosome:C_jacchus3.2.1:11:1:130397257:1	86189483	86197434	R	Small VCP/p97-interacting protein {ECO:0000313|EMBL:JAB33498.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011746}  [Source:UniProtKB/TrEMBL;Acc:F7GCE0]
ENSCJAG00000010299	KNOWN_BY_PROJECTION	protein_coding	RNF38	chromosome:C_jacchus3.2.1:1:1:210400635:1	138231728	138296312	R	ring finger protein 38 [Source:HGNC Symbol;Acc:HGNC:18052]
ENSCJAG00000006483	KNOWN	protein_coding	CHIT1	chromosome:C_jacchus3.2.1:19:1:49578535:1	24921512	24935128	R	Chitotriosidase-1 isoform 1 {ECO:0000313|EMBL:JAB25769.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011991}  [Source:UniProtKB/TrEMBL;Acc:F7EUF7]
ENSCJAG00000019436	NOVEL	protein_coding	ENSCJAG00000019436	chromosome:C_jacchus3.2.1:14:1:108792865:1	35471221	35577206	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050021}  [Source:UniProtKB/TrEMBL;Acc:F7FS19]
ENSCJAG00000010298	NOVEL	pseudogene	ENSCJAG00000010298	chromosome:C_jacchus3.2.1:1:1:210400635:1	138161269	138162724	D	<no descrition>
ENSCJAG00000021008	NOVEL	pseudogene	ENSCJAG00000021008	chromosome:C_jacchus3.2.1:1:1:210400635:1	138059824	138060038	R	<no descrition>
ENSCJAG00000038079	NOVEL	protein_coding	ENSCJAG00000038079	chromosome:C_jacchus3.2.1:1:1:210400635:1	138040456	138041097	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052228}  [Source:UniProtKB/TrEMBL;Acc:F7ILG3]
ENSCJAG00000006069	NOVEL	protein_coding	ENSCJAG00000006069	chromosome:C_jacchus3.2.1:15:1:98464013:1	27962526	27981963	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011179}  [Source:UniProtKB/TrEMBL;Acc:F7HZG7]
ENSCJAG00000003814	NOVEL	protein_coding	ENSCJAG00000003814	chromosome:C_jacchus3.2.1:14:1:108792865:1	35348266	35349148	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006913}  [Source:UniProtKB/TrEMBL;Acc:F7H5M0]
ENSCJAG00000006376	KNOWN	protein_coding	GAS2	chromosome:C_jacchus3.2.1:11:1:130397257:1	86037874	86181012	D	Growth arrest-specific protein 2 {ECO:0000313|EMBL:JAB01685.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050410}  [Source:UniProtKB/TrEMBL;Acc:F7DA42]
ENSCJAG00000006155	KNOWN_BY_PROJECTION	protein_coding	GLYCTK	chromosome:C_jacchus3.2.1:15:1:98464013:1	27954483	28038131	D	glycerate kinase [Source:HGNC Symbol;Acc:HGNC:24247]
ENSCJAG00000004522	KNOWN	protein_coding	COX10	chromosome:C_jacchus3.2.1:5:1:159171411:1	67339949	67470477	R	Protoheme IX farnesyltransferase, mitochondrial {ECO:0000256|PIRNR:PIRNR001773}  [Source:UniProtKB/TrEMBL;Acc:F6VLK0]
ENSCJAG00000019252	KNOWN	protein_coding	HERC4	chromosome:C_jacchus3.2.1:12:1:121768101:1	56213465	56372753	D	Putative E3 ubiquitin-protein ligase HERC4 isoform a {ECO:0000313|EMBL:JAB13790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035855}  [Source:UniProtKB/TrEMBL;Acc:F7H295]
ENSCJAG00000015429	KNOWN_BY_PROJECTION	protein_coding	TCP11	chromosome:C_jacchus3.2.1:4:1:171630274:1	36037813	36107097	R	t-complex 11, testis-specific [Source:HGNC Symbol;Acc:HGNC:11658]
ENSCJAG00000004509	NOVEL	protein_coding	ENSCJAG00000004509	chromosome:C_jacchus3.2.1:5:1:159171411:1	67025835	67027060	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008167}  [Source:UniProtKB/TrEMBL;Acc:F7ISE5]
ENSCJAG00000006408	KNOWN_BY_PROJECTION	protein_coding	SLC17A6	chromosome:C_jacchus3.2.1:11:1:130397257:1	85699169	85743414	D	solute carrier family 17 (vesicular glutamate transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:16703]
ENSCJAG00000004514	KNOWN_BY_PROJECTION	protein_coding	HS3ST3B1	chromosome:C_jacchus3.2.1:5:1:159171411:1	67240860	67287783	R	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 [Source:HGNC Symbol;Acc:HGNC:5198]
ENSCJAG00000006000	KNOWN	protein_coding	ALAS1	chromosome:C_jacchus3.2.1:15:1:98464013:1	27938470	27954779	D	5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}  [Source:UniProtKB/TrEMBL;Acc:F6XUX3]
ENSCJAG00000006464	KNOWN	protein_coding	CHI3L1	chromosome:C_jacchus3.2.1:19:1:49578535:1	24883750	24891793	R	Chitinase-3-like protein 1 {ECO:0000313|EMBL:JAB01928.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011948}  [Source:UniProtKB/TrEMBL;Acc:F7GBD4]
ENSCJAG00000015427	NOVEL	pseudogene	ENSCJAG00000015427	chromosome:C_jacchus3.2.1:4:1:171630274:1	36026513	36027000	D	<no descrition>
ENSCJAG00000004481	KNOWN	protein_coding	PMP22	chromosome:C_jacchus3.2.1:5:1:159171411:1	66331800	66368140	D	Peripheral myelin protein 22 {ECO:0000313|EMBL:JAB06851.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008158}  [Source:UniProtKB/TrEMBL;Acc:F7HND7]
ENSCJAG00000006452	NOVEL	protein_coding	ENSCJAG00000006452	chromosome:C_jacchus3.2.1:11:1:130397257:1	85671858	85672836	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016238}  [Source:UniProtKB/TrEMBL;Acc:F6Y4F5]
ENSCJAG00000006451	KNOWN_BY_PROJECTION	protein_coding	MYBPH	chromosome:C_jacchus3.2.1:19:1:49578535:1	24871641	24880626	R	myosin binding protein H [Source:HGNC Symbol;Acc:HGNC:7552]
ENSCJAG00000015400	NOVEL	protein_coding	ENSCJAG00000015400	chromosome:C_jacchus3.2.1:4:1:171630274:1	35934666	35962071	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028380}  [Source:UniProtKB/TrEMBL;Acc:F6Z689]
ENSCJAG00000006447	KNOWN	protein_coding	ADORA1	chromosome:C_jacchus3.2.1:19:1:49578535:1	24833188	24870041	D	Adenosine receptor A1 {ECO:0000256|RuleBase:RU201114}  [Source:UniProtKB/TrEMBL;Acc:F7HCR7]
ENSCJAG00000034880	KNOWN_BY_PROJECTION	protein_coding	ANKS1A	chromosome:C_jacchus3.2.1:4:1:171630274:1	35767459	35966059	D	ankyrin repeat and sterile alpha motif domain containing 1A [Source:HGNC Symbol;Acc:HGNC:20961]
ENSCJAG00000004463	KNOWN_BY_PROJECTION	protein_coding	TEKT3	chromosome:C_jacchus3.2.1:5:1:159171411:1	66254305	66290727	D	tektin 3 [Source:HGNC Symbol;Acc:HGNC:14293]
ENSCJAG00000035268	KNOWN_BY_PROJECTION	protein_coding	CDRT4	chromosome:C_jacchus3.2.1:5:1:159171411:1	66164964	66166959	D	CMT1A duplicated region transcript 4 [Source:HGNC Symbol;Acc:HGNC:14383]
ENSCJAG00000004461	NOVEL	pseudogene	ENSCJAG00000004461	chromosome:C_jacchus3.2.1:5:1:159171411:1	66077114	66077546	R	<no descrition>
ENSCJAG00000010234	KNOWN_BY_PROJECTION	protein_coding	GNE	chromosome:C_jacchus3.2.1:1:1:210400635:1	138032767	138083669	R	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase [Source:HGNC Symbol;Acc:HGNC:23657]
ENSCJAG00000006443	KNOWN	protein_coding	MYOG	chromosome:C_jacchus3.2.1:19:1:49578535:1	24783718	24786824	R	Myogenin {ECO:0000313|EMBL:JAB36198.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011870}  [Source:UniProtKB/TrEMBL;Acc:F7HCU7]
ENSCJAG00000015388	KNOWN	protein_coding	TAF11	chromosome:C_jacchus3.2.1:4:1:171630274:1	35754225	35766241	R	Transcription initiation factor TFIID subunit 11 isoform 1 {ECO:0000313|EMBL:JAB03488.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046844}  [Source:UniProtKB/TrEMBL;Acc:F7IMF2]
ENSCJAG00000034215	NOVEL	protein_coding	ENSCJAG00000034215	chromosome:C_jacchus3.2.1:5:1:159171411:1	66054893	66059763	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049612}  [Source:UniProtKB/TrEMBL;Acc:F7AWY6]
ENSCJAG00000004453	NOVEL	protein_coding	ENSCJAG00000004453	chromosome:C_jacchus3.2.1:5:1:159171411:1	66035007	66037241	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008059}  [Source:UniProtKB/TrEMBL;Acc:F6Z9C7]
ENSCJAG00000004442	KNOWN_BY_PROJECTION	protein_coding	TVP23C	chromosome:C_jacchus3.2.1:5:1:159171411:1	66016478	66080432	D	trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30453]
ENSCJAG00000032862	NOVEL	protein_coding	ENSCJAG00000032862	chromosome:C_jacchus3.2.1:5:1:159171411:1	65993447	66000731	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045812}  [Source:UniProtKB/TrEMBL;Acc:F6R6U6]
ENSCJAG00000005972	KNOWN_BY_PROJECTION	protein_coding	POC1A	chromosome:C_jacchus3.2.1:15:1:98464013:1	27825195	27907713	R	POC1 centriolar protein A [Source:HGNC Symbol;Acc:HGNC:24488]
ENSCJAG00000014882	KNOWN_BY_PROJECTION	protein_coding	FRAS1	chromosome:C_jacchus3.2.1:3:1:190850796:1	115993835	116478339	R	Fraser extracellular matrix complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:19185]
ENSCJAG00000001821	KNOWN_BY_PROJECTION	protein_coding	SLC12A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	25333169	25451794	D	solute carrier family 12 (sodium/potassium/chloride transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10910]
ENSCJAG00000005959	KNOWN_BY_PROJECTION	protein_coding	DUSP7	chromosome:C_jacchus3.2.1:15:1:98464013:1	27798331	27804839	R	dual specificity phosphatase 7 [Source:HGNC Symbol;Acc:HGNC:3073]
ENSCJAG00000004384	NOVEL	protein_coding	ENSCJAG00000004384	chromosome:C_jacchus3.2.1:5:1:159171411:1	65868423	65967891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044852}  [Source:UniProtKB/TrEMBL;Acc:F7CYL8]
ENSCJAG00000005951	KNOWN	protein_coding	ENSCJAG00000005951	chromosome:C_jacchus3.2.1:15:1:98464013:1	27737775	27740120	R	60S ribosomal protein L29 {ECO:0000313|EMBL:JAB30465.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010939}  [Source:UniProtKB/TrEMBL;Acc:F7IHN2]
ENSCJAG00000005914	KNOWN	protein_coding	ABHD14A-ACY1	chromosome:C_jacchus3.2.1:15:1:98464013:1	27721488	27735249	D	Abhydrolase domain-containing protein 14A {ECO:0000313|EMBL:JAB16815.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010929}  [Source:UniProtKB/TrEMBL;Acc:F7IHQ6]
ENSCJAG00000006456	KNOWN_BY_PROJECTION	protein_coding	ANO5	chromosome:C_jacchus3.2.1:11:1:130397257:1	85554553	85650211	D	anoctamin 5 [Source:HGNC Symbol;Acc:HGNC:27337]
ENSCJAG00000037327	KNOWN	protein_coding	CTXN2	chromosome:C_jacchus3.2.1:10:1:132174527:1	25333075	25348051	D	Cortexin-2 {ECO:0000313|EMBL:JAB17568.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040841}  [Source:UniProtKB/TrEMBL;Acc:F7IDW4]
ENSCJAG00000005905	KNOWN	protein_coding	ABHD14B	chromosome:C_jacchus3.2.1:15:1:98464013:1	27715596	27809252	R	Abhydrolase domain-containing protein 14B isoform 1 {ECO:0000313|EMBL:JAB07746.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034955}  [Source:UniProtKB/TrEMBL;Acc:F7I5W3]
ENSCJAG00000004366	KNOWN	protein_coding	ZNF286A	chromosome:C_jacchus3.2.1:5:1:159171411:1	65827286	65851981	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007924}; Zinc finger protein 286A {ECO:0000313|EMBL:JAB21408.1}  [Source:UniProtKB/TrEMBL;Acc:F6ZRR8]
ENSCJAG00000007816	NOVEL	protein_coding	ENSCJAG00000007816	chromosome:C_jacchus3.2.1:5:1:159171411:1	65753930	65760710	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049719}  [Source:UniProtKB/TrEMBL;Acc:F6VDC2]
ENSCJAG00000006504	NOVEL	protein_coding	ENSCJAG00000006504	chromosome:C_jacchus3.2.1:11:1:130397257:1	84717152	85012165	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012039}  [Source:UniProtKB/TrEMBL;Acc:F7H3Y4]
ENSCJAG00000015333	KNOWN_BY_PROJECTION	protein_coding	UHRF1BP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	35672671	35759986	D	UHRF1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:21216]
ENSCJAG00000001181	KNOWN_BY_PROJECTION	protein_coding	KRR1	chromosome:C_jacchus3.2.1:9:1:124281992:1	65177815	65189271	R	KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:5176]
ENSCJAG00000007812	NOVEL	protein_coding	ENSCJAG00000007812	chromosome:C_jacchus3.2.1:5:1:159171411:1	65744892	65747044	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014473}  [Source:UniProtKB/TrEMBL;Acc:F7HQA3]
ENSCJAG00000006529	NOVEL	protein_coding	ENSCJAG00000006529	chromosome:C_jacchus3.2.1:11:1:130397257:1	84520628	84521356	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012051}  [Source:UniProtKB/TrEMBL;Acc:F7GYR1]
ENSCJAG00000034303	KNOWN	protein_coding	NELL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	84057315	84360362	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012021}  [Source:UniProtKB/TrEMBL;Acc:F7H973]
ENSCJAG00000008879	NOVEL	protein_coding	ENSCJAG00000008879	chromosome:C_jacchus3.2.1:5:1:159171411:1	65711627	65720096	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051720}  [Source:UniProtKB/TrEMBL;Acc:F6UV51]
ENSCJAG00000015321	KNOWN	protein_coding	SNRPC	chromosome:C_jacchus3.2.1:4:1:171630274:1	35647949	35665387	D	U1 small nuclear ribonucleoprotein C {ECO:0000256|HAMAP-Rule:MF_03153, ECO:0000256|PIRNR:PIRNR037969}  [Source:UniProtKB/TrEMBL;Acc:F6XG37]
ENSCJAG00000010206	KNOWN	protein_coding	CLTA	chromosome:C_jacchus3.2.1:1:1:210400635:1	138008475	138055784	D	Clathrin light chain A isoform b {ECO:0000313|EMBL:JAB22950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018827}  [Source:UniProtKB/TrEMBL;Acc:F7CY08]
ENSCJAG00000015304	KNOWN_BY_PROJECTION	protein_coding	C6orf106	chromosome:C_jacchus3.2.1:4:1:171630274:1	35478405	35588864	R	chromosome 6 open reading frame 106 [Source:HGNC Symbol;Acc:HGNC:21215]
ENSCJAG00000015303	NOVEL	pseudogene	ENSCJAG00000015303	chromosome:C_jacchus3.2.1:4:1:171630274:1	35475993	35477117	R	<no descrition>
ENSCJAG00000001210	KNOWN	protein_coding	GLIPR1	chromosome:C_jacchus3.2.1:9:1:124281992:1	65157925	65177308	D	Glioma pathogenesis-related protein 1 {ECO:0000313|EMBL:JAB05521.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002115}  [Source:UniProtKB/TrEMBL;Acc:F7IL97]
ENSCJAG00000001222	KNOWN_BY_PROJECTION	protein_coding	GLIPR1L2	chromosome:C_jacchus3.2.1:9:1:124281992:1	65040842	65098458	D	GLI pathogenesis-related 1 like 2 [Source:HGNC Symbol;Acc:HGNC:28592]
ENSCJAG00000005783	KNOWN	protein_coding	PCBP4	chromosome:C_jacchus3.2.1:15:1:98464013:1	27703562	27714452	R	Poly(RC)-binding protein 4 isoform c {ECO:0000313|EMBL:JAB06706.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010833}  [Source:UniProtKB/TrEMBL;Acc:F7HYV5]
ENSCJAG00000001875	KNOWN_BY_PROJECTION	protein_coding	MYEF2	chromosome:C_jacchus3.2.1:10:1:132174527:1	25279341	25317563	R	myelin expression factor 2 [Source:HGNC Symbol;Acc:HGNC:17940]
ENSCJAG00000014968	KNOWN	protein_coding	ANXA3	chromosome:C_jacchus3.2.1:3:1:190850796:1	115918196	115983948	R	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F7H4N2]
ENSCJAG00000037770	NOVEL	protein_coding	ENSCJAG00000037770	chromosome:C_jacchus3.2.1:1:1:210400635:1	138004358	138007057	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052111}  [Source:UniProtKB/TrEMBL;Acc:F7I2R7]
ENSCJAG00000036542	NOVEL	protein_coding	ENSCJAG00000036542	chromosome:C_jacchus3.2.1:1:1:210400635:1	137993951	137999290	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052148}  [Source:UniProtKB/TrEMBL;Acc:F7I0D2]
ENSCJAG00000001234	KNOWN_BY_PROJECTION	protein_coding	GLIPR1L1	chromosome:C_jacchus3.2.1:9:1:124281992:1	64988911	65024366	D	GLI pathogenesis-related 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28392]
ENSCJAG00000010190	KNOWN_BY_PROJECTION	protein_coding	GLIPR2	chromosome:C_jacchus3.2.1:1:1:210400635:1	137963222	137991105	D	GLI pathogenesis-related 2 [Source:HGNC Symbol;Acc:HGNC:18007]
ENSCJAG00000015294	KNOWN_BY_PROJECTION	protein_coding	SPDEF	chromosome:C_jacchus3.2.1:4:1:171630274:1	35426359	35446084	R	SAM pointed domain containing ETS transcription factor [Source:HGNC Symbol;Acc:HGNC:17257]
ENSCJAG00000006353	KNOWN_BY_PROJECTION	protein_coding	PPFIA4	chromosome:C_jacchus3.2.1:19:1:49578535:1	24737104	24779180	D	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 [Source:HGNC Symbol;Acc:HGNC:9248]
ENSCJAG00000014991	NOVEL	protein_coding	ENSCJAG00000014991	chromosome:C_jacchus3.2.1:3:1:190850796:1	115896997	115898475	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027606}  [Source:UniProtKB/TrEMBL;Acc:F7H4M6]
ENSCJAG00000001909	KNOWN_BY_PROJECTION	protein_coding	SLC24A5	chromosome:C_jacchus3.2.1:10:1:132174527:1	25258200	25279523	D	solute carrier family 24 (sodium/potassium/calcium exchanger), member 5 [Source:HGNC Symbol;Acc:HGNC:20611]
ENSCJAG00000005742	KNOWN_BY_PROJECTION	protein_coding	PARP3	chromosome:C_jacchus3.2.1:15:1:98464013:1	27688800	27694729	D	poly (ADP-ribose) polymerase family, member 3 [Source:HGNC Symbol;Acc:HGNC:273]
ENSCJAG00000015266	KNOWN	protein_coding	PACSIN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	35353346	35422417	D	Protein kinase C and casein kinase substrate in neurons protein 1 {ECO:0000313|EMBL:JAB22531.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049922}  [Source:UniProtKB/TrEMBL;Acc:F6UQ67]
ENSCJAG00000019196	KNOWN_BY_PROJECTION	protein_coding	MYPN	chromosome:C_jacchus3.2.1:12:1:121768101:1	56068406	56176218	R	myopalladin [Source:HGNC Symbol;Acc:HGNC:23246]
ENSCJAG00000005767	KNOWN_BY_PROJECTION	protein_coding	GPR62	chromosome:C_jacchus3.2.1:15:1:98464013:1	27701086	27703600	D	G protein-coupled receptor 62 [Source:HGNC Symbol;Acc:HGNC:13301]
ENSCJAG00000010143	KNOWN	protein_coding	RECK	chromosome:C_jacchus3.2.1:1:1:210400635:1	137856668	137949210	D	Reversion-inducing cysteine-rich protein with Kazal motifs {ECO:0000313|EMBL:JAB46242.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018747}  [Source:UniProtKB/TrEMBL;Acc:F7EPB0]
ENSCJAG00000014318	KNOWN	protein_coding	SLC4A4	chromosome:C_jacchus3.2.1:3:1:190850796:1	123120229	123482364	R	Electrogenic sodium bicarbonate cotransporter 1 isoform 1 {ECO:0000313|EMBL:JAB17165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026551}  [Source:UniProtKB/TrEMBL;Acc:F7IDW0]
ENSCJAG00000015914	KNOWN_BY_PROJECTION	protein_coding	OXTR	chromosome:C_jacchus3.2.1:15:1:98464013:1	60672911	60688438	R	oxytocin receptor [Source:HGNC Symbol;Acc:HGNC:8529]
ENSCJAG00000014955	KNOWN_BY_PROJECTION	protein_coding	CD68	chromosome:C_jacchus3.2.1:5:1:159171411:1	74266448	74268604	R	CD68 molecule [Source:HGNC Symbol;Acc:HGNC:1693]
ENSCJAG00000010079	KNOWN_BY_PROJECTION	protein_coding	RTN4	chromosome:C_jacchus3.2.1:14:1:108792865:1	52435279	52523275	D	reticulon 4 [Source:HGNC Symbol;Acc:HGNC:14085]
ENSCJAG00000015912	KNOWN	protein_coding	CAV3	chromosome:C_jacchus3.2.1:15:1:98464013:1	60652793	60666801	D	Caveolin {ECO:0000256|RuleBase:RU000680}  [Source:UniProtKB/TrEMBL;Acc:F7ILZ0]
ENSCJAG00000015111	KNOWN	protein_coding	SOX15	chromosome:C_jacchus3.2.1:5:1:159171411:1	74256301	74258277	D	Protein SOX-15 {ECO:0000313|EMBL:JAB07815.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027852}  [Source:UniProtKB/TrEMBL;Acc:F7G465]
ENSCJAG00000034352	NOVEL	protein_coding	ENSCJAG00000034352	chromosome:C_jacchus3.2.1:15:1:98464013:1	60419833	60478812	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042922}  [Source:UniProtKB/TrEMBL;Acc:F6WR20]
ENSCJAG00000015250	NOVEL	protein_coding	ENSCJAG00000015250	chromosome:C_jacchus3.2.1:4:1:171630274:1	35309490	35317687	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041154}  [Source:UniProtKB/TrEMBL;Acc:F7DX30]
ENSCJAG00000015248	NOVEL	protein_coding	ENSCJAG00000015248	chromosome:C_jacchus3.2.1:4:1:171630274:1	35269946	35270974	D	<no descrition>
ENSCJAG00000015243	KNOWN	protein_coding	NUDT3	chromosome:C_jacchus3.2.1:4:1:171630274:1	35158251	35280810	R	Diphosphoinositol polyphosphate phosphohydrolase 1 {ECO:0000313|EMBL:JAB04666.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028094}  [Source:UniProtKB/TrEMBL;Acc:F6UJG1]
ENSCJAG00000015241	KNOWN_BY_PROJECTION	protein_coding	C6orf1	chromosome:C_jacchus3.2.1:4:1:171630274:1	35129926	35131750	R	chromosome 6 open reading frame 1 [Source:HGNC Symbol;Acc:HGNC:1340]
ENSCJAG00000014993	KNOWN_BY_PROJECTION	protein_coding	BMP2K	chromosome:C_jacchus3.2.1:3:1:190850796:1	115607612	115700970	R	BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
ENSCJAG00000031433	KNOWN_BY_PROJECTION	protein_coding	NT5M	chromosome:C_jacchus3.2.1:5:1:159171411:1	65661997	65688392	R	5',3'-nucleotidase, mitochondrial [Source:HGNC Symbol;Acc:HGNC:15769]
ENSCJAG00000008916	KNOWN	protein_coding	MED9	chromosome:C_jacchus3.2.1:5:1:159171411:1	65502793	65515916	R	Mediator of RNA polymerase II transcription subunit 9 {ECO:0000313|EMBL:JAB08965.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016315}  [Source:UniProtKB/TrEMBL;Acc:F7C642]
ENSCJAG00000005736	KNOWN	protein_coding	RRP9	chromosome:C_jacchus3.2.1:15:1:98464013:1	27679970	27688381	R	U3 small nucleolar RNA-interacting protein 2 {ECO:0000313|EMBL:JAB01743.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010519}  [Source:UniProtKB/TrEMBL;Acc:F7IHZ8]
ENSCJAG00000019181	KNOWN_BY_PROJECTION	protein_coding	PBLD	chromosome:C_jacchus3.2.1:12:1:121768101:1	55949416	55994391	D	phenazine biosynthesis-like protein domain containing [Source:HGNC Symbol;Acc:HGNC:23301]
ENSCJAG00000008927	KNOWN	protein_coding	RASD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	65498805	65500720	D	Dexamethasone-induced Ras-related protein 1 isoform 1 proprotein {ECO:0000313|EMBL:JAB03485.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016322}  [Source:UniProtKB/TrEMBL;Acc:F7C5N9]
ENSCJAG00000032309	KNOWN_BY_PROJECTION	protein_coding	IQCF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	27630220	27634818	R	IQ motif containing F1 [Source:HGNC Symbol;Acc:HGNC:28607]
ENSCJAG00000015010	KNOWN	protein_coding	PAQR3	chromosome:C_jacchus3.2.1:3:1:190850796:1	115580019	115601026	D	Progestin and adipoQ receptor family member 3 {ECO:0000313|EMBL:JAB02628.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027673}  [Source:UniProtKB/TrEMBL;Acc:F7GGE4]
ENSCJAG00000005719	KNOWN_BY_PROJECTION	protein_coding	IQCF5	chromosome:C_jacchus3.2.1:15:1:98464013:1	27614789	27616632	R	IQ motif containing F5 [Source:HGNC Symbol;Acc:HGNC:35159]
ENSCJAG00000023110	KNOWN_BY_PROJECTION	protein_coding	NAA11	chromosome:C_jacchus3.2.1:3:1:190850796:1	115218960	115227987	D	N(alpha)-acetyltransferase 11, NatA catalytic subunit [Source:HGNC Symbol;Acc:HGNC:28125]
ENSCJAG00000006534	KNOWN_BY_PROJECTION	protein_coding	SLC6A5	chromosome:C_jacchus3.2.1:11:1:130397257:1	83983516	84039892	D	solute carrier family 6 (neurotransmitter transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:11051]
ENSCJAG00000005707	KNOWN_BY_PROJECTION	protein_coding	IQCF3	chromosome:C_jacchus3.2.1:15:1:98464013:1	27583273	27584646	D	IQ motif containing F3 [Source:HGNC Symbol;Acc:HGNC:31816]
ENSCJAG00000005710	KNOWN_BY_PROJECTION	protein_coding	IQCF2	chromosome:C_jacchus3.2.1:15:1:98464013:1	27604654	27606192	D	IQ motif containing F2 [Source:HGNC Symbol;Acc:HGNC:31815]
ENSCJAG00000005702	NOVEL	protein_coding	ENSCJAG00000005702	chromosome:C_jacchus3.2.1:15:1:98464013:1	27560251	27561852	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010458}  [Source:UniProtKB/TrEMBL;Acc:F7HU22]
ENSCJAG00000008932	KNOWN	protein_coding	PEMT	chromosome:C_jacchus3.2.1:5:1:159171411:1	65407706	65490234	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016342}  [Source:UniProtKB/TrEMBL;Acc:F7BQ39]
ENSCJAG00000005658	NOVEL	protein_coding	ENSCJAG00000005658	chromosome:C_jacchus3.2.1:15:1:98464013:1	27455540	27468340	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010426}  [Source:UniProtKB/TrEMBL;Acc:F7HWV6]
ENSCJAG00000001238	KNOWN_BY_PROJECTION	protein_coding	CAPS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	64933278	64981167	R	calcyphosine 2 [Source:HGNC Symbol;Acc:HGNC:16471]
ENSCJAG00000008944	NOVEL	protein_coding	ENSCJAG00000008944	chromosome:C_jacchus3.2.1:5:1:159171411:1	65308802	65309622	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052379}  [Source:UniProtKB/TrEMBL;Acc:F7ILD8]
ENSCJAG00000005652	KNOWN	protein_coding	TEX264	chromosome:C_jacchus3.2.1:15:1:98464013:1	27419017	27452877	D	Testis-expressed sequence 264 protein isoform 1 {ECO:0000313|EMBL:JAB08851.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010340}  [Source:UniProtKB/TrEMBL;Acc:F6ZT46]
ENSCJAG00000010080	KNOWN_BY_PROJECTION	protein_coding	FAM221B	chromosome:C_jacchus3.2.1:1:1:210400635:1	137595263	137606380	R	family with sequence similarity 221, member B [Source:HGNC Symbol;Acc:HGNC:30762]
ENSCJAG00000006297	KNOWN	protein_coding	TMEM183A	chromosome:C_jacchus3.2.1:19:1:49578535:1	24703885	24720894	D	Transmembrane protein 183A {ECO:0000313|EMBL:JAB08537.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011686}  [Source:UniProtKB/TrEMBL;Acc:F7H7T9]
ENSCJAG00000005575	KNOWN	protein_coding	RAD54L2	chromosome:C_jacchus3.2.1:15:1:98464013:1	27290347	27410123	D	Helicase ARIP4 {ECO:0000313|EMBL:JAB10613.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010323}  [Source:UniProtKB/TrEMBL;Acc:F7AAB7]
ENSCJAG00000019154	KNOWN	protein_coding	HNRNPH3	chromosome:C_jacchus3.2.1:12:1:121768101:1	55939068	55951110	R	Heterogeneous nuclear ribonucleoprotein H3 isoform a {ECO:0000313|EMBL:JAB22510.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035596}  [Source:UniProtKB/TrEMBL;Acc:F7E3S6]
ENSCJAG00000006650	KNOWN	protein_coding	PRMT3	chromosome:C_jacchus3.2.1:11:1:130397257:1	83773084	83908178	D	Protein arginine N-methyltransferase 3 isoform 1 {ECO:0000313|EMBL:JAB07376.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043335}  [Source:UniProtKB/TrEMBL;Acc:F7HM27]
ENSCJAG00000008947	KNOWN_BY_PROJECTION	protein_coding	RAI1	chromosome:C_jacchus3.2.1:5:1:159171411:1	65167325	65303430	R	retinoic acid induced 1 [Source:HGNC Symbol;Acc:HGNC:9834]
ENSCJAG00000005537	KNOWN_BY_PROJECTION	protein_coding	VPRBP	chromosome:C_jacchus3.2.1:15:1:98464013:1	27158538	27239718	R	Vpr (HIV-1) binding protein [Source:HGNC Symbol;Acc:HGNC:30911]
ENSCJAG00000001261	KNOWN_BY_PROJECTION	protein_coding	KCNC2	chromosome:C_jacchus3.2.1:9:1:124281992:1	64705446	64874905	R	potassium channel, voltage gated Shaw related subfamily C, member 2 [Source:HGNC Symbol;Acc:HGNC:6234]
ENSCJAG00000005531	NOVEL	protein_coding	ENSCJAG00000005531	chromosome:C_jacchus3.2.1:15:1:98464013:1	27148928	27154380	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042167}  [Source:UniProtKB/TrEMBL;Acc:F6V7V2]
ENSCJAG00000005514	KNOWN_BY_PROJECTION	protein_coding	MANF	chromosome:C_jacchus3.2.1:15:1:98464013:1	27142572	27146937	D	mesencephalic astrocyte-derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:15461]
ENSCJAG00000008953	KNOWN	protein_coding	SREBF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	65138356	65165861	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049145}  [Source:UniProtKB/TrEMBL;Acc:F7AJ08]
ENSCJAG00000023388	NOVEL	pseudogene	ENSCJAG00000023388	chromosome:C_jacchus3.2.1:9:1:124281992:1	64031354	64031945	D	<no descrition>
ENSCJAG00000001285	NOVEL	pseudogene	ENSCJAG00000001285	chromosome:C_jacchus3.2.1:9:1:124281992:1	62532361	62532863	D	<no descrition>
ENSCJAG00000001302	NOVEL	protein_coding	ENSCJAG00000001302	chromosome:C_jacchus3.2.1:9:1:124281992:1	62253876	62254829	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002283}  [Source:UniProtKB/TrEMBL;Acc:F7HK01]
ENSCJAG00000003605	KNOWN_BY_PROJECTION	protein_coding	DYSF	chromosome:C_jacchus3.2.1:14:1:108792865:1	35174529	35412831	R	dysferlin [Source:HGNC Symbol;Acc:HGNC:3097]
ENSCJAG00000015024	KNOWN	protein_coding	ANTXR2	chromosome:C_jacchus3.2.1:3:1:190850796:1	114465398	114632293	D	Anthrax toxin receptor 2 isoform 1 {ECO:0000313|EMBL:JAB19935.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049121}  [Source:UniProtKB/TrEMBL;Acc:F7BK75]
ENSCJAG00000010090	KNOWN	protein_coding	TMEM8B	chromosome:C_jacchus3.2.1:1:1:210400635:1	137592027	137631011	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018634}  [Source:UniProtKB/TrEMBL;Acc:F7H0P0]
ENSCJAG00000006277	KNOWN	protein_coding	CYB5R1	chromosome:C_jacchus3.2.1:19:1:49578535:1	24662724	24668412	R	NADH-cytochrome b5 reductase 1 {ECO:0000313|EMBL:JAB07690.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011579}  [Source:UniProtKB/TrEMBL;Acc:F7I687]
ENSCJAG00000006718	KNOWN_BY_PROJECTION	protein_coding	HTATIP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	83751360	83768975	D	HIV-1 Tat interactive protein 2, 30kDa [Source:HGNC Symbol;Acc:HGNC:16637]
ENSCJAG00000015062	NOVEL	pseudogene	ENSCJAG00000015062	chromosome:C_jacchus3.2.1:3:1:190850796:1	114462318	114463719	D	<no descrition>
ENSCJAG00000005394	KNOWN	protein_coding	DOCK3	chromosome:C_jacchus3.2.1:15:1:98464013:1	26399455	27140634	D	Dedicator of cytokinesis protein 3 {ECO:0000313|EMBL:JAB17139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010050}  [Source:UniProtKB/TrEMBL;Acc:F7BDT9]
ENSCJAG00000015064	KNOWN_BY_PROJECTION	protein_coding	PRDM8	chromosome:C_jacchus3.2.1:3:1:190850796:1	114311981	114315435	R	PR domain containing 8 [Source:HGNC Symbol;Acc:HGNC:13993]
ENSCJAG00000006733	NOVEL	pseudogene	ENSCJAG00000006733	chromosome:C_jacchus3.2.1:11:1:130397257:1	83552903	83553384	R	<no descrition>
ENSCJAG00000006268	KNOWN_BY_PROJECTION	protein_coding	ADIPOR1	chromosome:C_jacchus3.2.1:19:1:49578535:1	24641180	24651146	R	adiponectin receptor 1 [Source:HGNC Symbol;Acc:HGNC:24040]
ENSCJAG00000006734	KNOWN_BY_PROJECTION	protein_coding	DBX1	chromosome:C_jacchus3.2.1:11:1:130397257:1	83524980	83529082	R	developing brain homeobox 1 [Source:HGNC Symbol;Acc:HGNC:33185]
ENSCJAG00000001287	KNOWN_BY_PROJECTION	protein_coding	TRHDE	chromosome:C_jacchus3.2.1:9:1:124281992:1	61926100	62326193	D	thyrotropin-releasing hormone degrading enzyme [Source:HGNC Symbol;Acc:HGNC:30748]
ENSCJAG00000010060	KNOWN_BY_PROJECTION	protein_coding	SPAG8	chromosome:C_jacchus3.2.1:1:1:210400635:1	137586853	137589675	R	sperm associated antigen 8 [Source:HGNC Symbol;Acc:HGNC:14105]
ENSCJAG00000031186	NOVEL	pseudogene	ENSCJAG00000031186	chromosome:C_jacchus3.2.1:11:1:130397257:1	83306821	83307359	D	<no descrition>
ENSCJAG00000010068	KNOWN	protein_coding	HINT2	chromosome:C_jacchus3.2.1:1:1:210400635:1	137590496	137592883	R	Histidine triad nucleotide-binding protein 2, mitochondrial {ECO:0000313|EMBL:JAB01950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018518}  [Source:UniProtKB/TrEMBL;Acc:F7EQY7]
ENSCJAG00000015049	KNOWN_BY_PROJECTION	protein_coding	DIEXF	chromosome:C_jacchus3.2.1:19:1:49578535:1	31928256	31952920	D	digestive organ expansion factor homolog (zebrafish) [Source:HGNC Symbol;Acc:HGNC:28440]
ENSCJAG00000015906	NOVEL	pseudogene	ENSCJAG00000015906	chromosome:C_jacchus3.2.1:15:1:98464013:1	60339901	60341565	D	<no descrition>
ENSCJAG00000015896	KNOWN	protein_coding	LMCD1	chromosome:C_jacchus3.2.1:15:1:98464013:1	60270770	60335943	D	LIM and cysteine-rich domains protein 1 {ECO:0000313|EMBL:JAB02235.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029268}  [Source:UniProtKB/TrEMBL;Acc:F7IRM4]
ENSCJAG00000015032	KNOWN	protein_coding	IRF6	chromosome:C_jacchus3.2.1:19:1:49578535:1	31887091	31904997	R	Interferon regulatory factor 6 isoform 1 {ECO:0000313|EMBL:JAB10175.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027720}  [Source:UniProtKB/TrEMBL;Acc:F7E812]
ENSCJAG00000017302	KNOWN	protein_coding	PALM2	chromosome:C_jacchus3.2.1:1:1:210400635:1	153112639	153656601	D	Callithrix jacchus A kinase (PRKA) anchor protein 2 (AKAP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001204128]
ENSCJAG00000015067	KNOWN	protein_coding	FGF5	chromosome:C_jacchus3.2.1:3:1:190850796:1	114218489	114242124	R	Fibroblast growth factor 5 isoform 2 {ECO:0000313|EMBL:JAB24081.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027762}  [Source:UniProtKB/TrEMBL;Acc:F7DBG3]
ENSCJAG00000009003	KNOWN_BY_PROJECTION	protein_coding	TOM1L2	chromosome:C_jacchus3.2.1:5:1:159171411:1	65002336	65128906	D	target of myb1-like 2 (chicken) [Source:HGNC Symbol;Acc:HGNC:11984]
ENSCJAG00000015077	NOVEL	pseudogene	ENSCJAG00000015077	chromosome:C_jacchus3.2.1:3:1:190850796:1	113773010	113773748	R	<no descrition>
ENSCJAG00000015075	KNOWN	protein_coding	C4ORF22	chromosome:C_jacchus3.2.1:3:1:190850796:1	113464985	113575877	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027779}  [Source:UniProtKB/TrEMBL;Acc:F7HER8]
ENSCJAG00000036648	KNOWN	protein_coding	MAPKAPK3	chromosome:C_jacchus3.2.1:15:1:98464013:1	26342515	26374260	D	MAP kinase-activated protein kinase 3 {ECO:0000313|EMBL:JAB09241.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009846}  [Source:UniProtKB/TrEMBL;Acc:F7F6V7]
ENSCJAG00000006739	KNOWN_BY_PROJECTION	protein_coding	NAV2	chromosome:C_jacchus3.2.1:11:1:130397257:1	83068947	83489593	D	neuron navigator 2 [Source:HGNC Symbol;Acc:HGNC:15997]
ENSCJAG00000015079	KNOWN_BY_PROJECTION	protein_coding	BMP3	chromosome:C_jacchus3.2.1:3:1:190850796:1	113370100	113393245	R	bone morphogenetic protein 3 [Source:HGNC Symbol;Acc:HGNC:1070]
ENSCJAG00000005345	KNOWN	protein_coding	CISH	chromosome:C_jacchus3.2.1:15:1:98464013:1	26330673	26336038	R	Cytokine-inducible SH2-containing protein isoform 2 {ECO:0000313|EMBL:JAB40206.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009766}  [Source:UniProtKB/TrEMBL;Acc:F7GWT1]
ENSCJAG00000003816	KNOWN_BY_PROJECTION	protein_coding	CYP26B1	chromosome:C_jacchus3.2.1:14:1:108792865:1	34710333	34727495	D	cytochrome P450, family 26, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20581]
ENSCJAG00000019088	KNOWN	protein_coding	RUFY2	chromosome:C_jacchus3.2.1:12:1:121768101:1	55878846	55941183	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035537}  [Source:UniProtKB/TrEMBL;Acc:F7I3Y7]
ENSCJAG00000005338	KNOWN	protein_coding	C3ORF18	chromosome:C_jacchus3.2.1:15:1:98464013:1	26281635	26290019	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009756}; Uncharacterized protein C3orf18 isoform 1 {ECO:0000313|EMBL:JAB07722.1}  [Source:UniProtKB/TrEMBL;Acc:F7GWV3]
ENSCJAG00000005321	KNOWN_BY_PROJECTION	protein_coding	HEMK1	chromosome:C_jacchus3.2.1:15:1:98464013:1	26130635	26303927	D	HemK methyltransferase family member 1 [Source:HGNC Symbol;Acc:HGNC:24923]
ENSCJAG00000031318	NOVEL	pseudogene	ENSCJAG00000031318	chromosome:C_jacchus3.2.1:11:1:130397257:1	82609552	82610337	R	<no descrition>
ENSCJAG00000003846	KNOWN_BY_PROJECTION	protein_coding	EXOC6B	chromosome:C_jacchus3.2.1:14:1:108792865:1	33957109	34669854	D	exocyst complex component 6B [Source:HGNC Symbol;Acc:HGNC:17085]
ENSCJAG00000006231	KNOWN_BY_PROJECTION	protein_coding	KLHL12	chromosome:C_jacchus3.2.1:19:1:49578535:1	24583401	24623850	R	kelch-like family member 12 [Source:HGNC Symbol;Acc:HGNC:19360]
ENSCJAG00000003870	KNOWN_BY_PROJECTION	protein_coding	SPR	chromosome:C_jacchus3.2.1:14:1:108792865:1	33883793	33888335	R	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) [Source:HGNC Symbol;Acc:HGNC:11257]
ENSCJAG00000001306	NOVEL	protein_coding	TPH2	chromosome:C_jacchus3.2.1:9:1:124281992:1	61559139	61654982	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002300}  [Source:UniProtKB/TrEMBL;Acc:F7IL75]
ENSCJAG00000003874	KNOWN_BY_PROJECTION	protein_coding	EMX1	chromosome:C_jacchus3.2.1:14:1:108792865:1	33839397	33857814	R	empty spiracles homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3340]
ENSCJAG00000006811	KNOWN_BY_PROJECTION	protein_coding	E2F8	chromosome:C_jacchus3.2.1:11:1:130397257:1	82561832	82579062	R	E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]
ENSCJAG00000003948	NOVEL	pseudogene	ENSCJAG00000003948	chromosome:C_jacchus3.2.1:14:1:108792865:1	33717782	33717971	R	<no descrition>
ENSCJAG00000006220	NOVEL	protein_coding	ENSCJAG00000006220	chromosome:C_jacchus3.2.1:19:1:49578535:1	24510343	24513068	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011428}  [Source:UniProtKB/TrEMBL;Acc:F7HNW7]
ENSCJAG00000006222	KNOWN	protein_coding	RABIF	chromosome:C_jacchus3.2.1:19:1:49578535:1	24565044	24581123	R	Guanine nucleotide exchange factor MSS4 {ECO:0000313|EMBL:JAB01635.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011439}  [Source:UniProtKB/TrEMBL;Acc:F7HNP7]
ENSCJAG00000005213	KNOWN	protein_coding	TMEM115	chromosome:C_jacchus3.2.1:15:1:98464013:1	26065452	26070406	R	Transmembrane protein 115 {ECO:0000313|EMBL:JAB04045.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009515}  [Source:UniProtKB/TrEMBL;Acc:F7DM07]
ENSCJAG00000005215	KNOWN_BY_PROJECTION	protein_coding	CACNA2D2	chromosome:C_jacchus3.2.1:15:1:98464013:1	26076235	26107284	R	calcium channel, voltage-dependent, alpha 2/delta subunit 2 [Source:HGNC Symbol;Acc:HGNC:1400]
ENSCJAG00000009042	KNOWN_BY_PROJECTION	protein_coding	LRRC48	chromosome:C_jacchus3.2.1:5:1:159171411:1	64957501	64995844	R	leucine rich repeat containing 48 [Source:HGNC Symbol;Acc:HGNC:25384]
ENSCJAG00000005206	KNOWN	protein_coding	CYB561D2	chromosome:C_jacchus3.2.1:15:1:98464013:1	26061788	26064740	D	Cytochrome b561 domain-containing protein 2 {ECO:0000313|EMBL:JAB01809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009509}  [Source:UniProtKB/TrEMBL;Acc:F7DME0]
ENSCJAG00000015083	KNOWN_BY_PROJECTION	protein_coding	PRKG2	chromosome:C_jacchus3.2.1:3:1:190850796:1	113198539	113316517	D	protein kinase, cGMP-dependent, type II [Source:HGNC Symbol;Acc:HGNC:9416]
ENSCJAG00000015226	NOVEL	protein_coding	ENSCJAG00000015226	chromosome:C_jacchus3.2.1:4:1:171630274:1	35118300	35129643	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047145}  [Source:UniProtKB/TrEMBL;Acc:F7HUN6]
ENSCJAG00000009061	KNOWN	protein_coding	ATPAF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	64935079	64956313	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016612}  [Source:UniProtKB/TrEMBL;Acc:F6YLG6]
ENSCJAG00000009970	KNOWN	protein_coding	NPR2	chromosome:C_jacchus3.2.1:1:1:210400635:1	137569203	137586634	D	Guanylate cyclase {ECO:0000256|RuleBase:RU003431}  [Source:UniProtKB/TrEMBL;Acc:F7GJB4]
ENSCJAG00000009068	KNOWN_BY_PROJECTION	protein_coding	GID4	chromosome:C_jacchus3.2.1:5:1:159171411:1	64902356	64924951	R	GID complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:28453]
ENSCJAG00000005172	KNOWN	protein_coding	NPRL2	chromosome:C_jacchus3.2.1:15:1:98464013:1	26058382	26061976	R	Nitrogen permease regulator 2-like protein {ECO:0000313|EMBL:JAB02507.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009498}  [Source:UniProtKB/TrEMBL;Acc:F7EGD3]
ENSCJAG00000015110	NOVEL	pseudogene	ENSCJAG00000015110	chromosome:C_jacchus3.2.1:3:1:190850796:1	113106305	113107189	R	<no descrition>
ENSCJAG00000032525	NOVEL	pseudogene	ENSCJAG00000032525	chromosome:C_jacchus3.2.1:4:1:171630274:1	35077248	35077948	D	<no descrition>
ENSCJAG00000034071	NOVEL	protein_coding	ENSCJAG00000034071	chromosome:C_jacchus3.2.1:4:1:171630274:1	34923572	34923874	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049293}  [Source:UniProtKB/TrEMBL;Acc:F6U9T2]
ENSCJAG00000015287	KNOWN_BY_PROJECTION	protein_coding	GRM4	chromosome:C_jacchus3.2.1:4:1:171630274:1	34910940	35023092	R	glutamate receptor, metabotropic 4 [Source:HGNC Symbol;Acc:HGNC:4596]
ENSCJAG00000009958	KNOWN_BY_PROJECTION	protein_coding	MSMP	chromosome:C_jacchus3.2.1:1:1:210400635:1	137529345	137530631	R	microseminoprotein, prostate associated [Source:HGNC Symbol;Acc:HGNC:29663]
ENSCJAG00000022183	NOVEL	pseudogene	ENSCJAG00000022183	chromosome:C_jacchus3.2.1:4:1:171630274:1	34763217	34764612	R	<no descrition>
ENSCJAG00000014953	KNOWN	protein_coding	DRG2	chromosome:C_jacchus3.2.1:5:1:159171411:1	64865160	64884618	R	Developmentally-regulated GTP-binding protein 2 {ECO:0000313|EMBL:JAB09995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045660}  [Source:UniProtKB/TrEMBL;Acc:F6Q217]
ENSCJAG00000006844	KNOWN	protein_coding	CSRP3	chromosome:C_jacchus3.2.1:11:1:130397257:1	82514861	82534664	R	Cysteine and glycine-rich protein 3 {ECO:0000313|EMBL:JAB37652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012674}  [Source:UniProtKB/TrEMBL;Acc:F6U8R3]
ENSCJAG00000005151	KNOWN	protein_coding	ZMYND10	chromosome:C_jacchus3.2.1:15:1:98464013:1	26052293	26056569	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009430}; Zinc finger MYND domain-containing protein 10 {ECO:0000313|EMBL:JAB20670.1}  [Source:UniProtKB/TrEMBL;Acc:F7GCB1]
ENSCJAG00000019040	KNOWN_BY_PROJECTION	protein_coding	DNA2	chromosome:C_jacchus3.2.1:12:1:121768101:1	55811861	55867141	D	DNA replication helicase/nuclease 2 [Source:HGNC Symbol;Acc:HGNC:2939]
ENSCJAG00000009924	KNOWN	protein_coding	RGP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	137525249	137529619	D	Retrograde Golgi transport protein RGP1 homolog {ECO:0000313|EMBL:JAB09782.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018261}  [Source:UniProtKB/TrEMBL;Acc:F7G9I0]
ENSCJAG00000019032	KNOWN_BY_PROJECTION	protein_coding	SLC25A16	chromosome:C_jacchus3.2.1:12:1:121768101:1	55760025	55800096	D	solute carrier family 25 (mitochondrial carrier), member 16 [Source:HGNC Symbol;Acc:HGNC:10986]
ENSCJAG00000019030	NOVEL	protein_coding	ENSCJAG00000019030	chromosome:C_jacchus3.2.1:12:1:121768101:1	55714666	55715804	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035348}  [Source:UniProtKB/TrEMBL;Acc:F7I1P7]
ENSCJAG00000003886	KNOWN	protein_coding	SFXN5	chromosome:C_jacchus3.2.1:14:1:108792865:1	33700863	33832358	D	Sideroflexin-5 {ECO:0000313|EMBL:JAB07039.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048757}  [Source:UniProtKB/TrEMBL;Acc:F6QJB4]
ENSCJAG00000003950	KNOWN	protein_coding	RAB11FIP5	chromosome:C_jacchus3.2.1:14:1:108792865:1	33656476	33696942	D	Rab11 family-interacting protein 5 {ECO:0000313|EMBL:JAB03511.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007174}  [Source:UniProtKB/TrEMBL;Acc:F6RA80]
ENSCJAG00000003959	KNOWN_BY_PROJECTION	protein_coding	NOTO	chromosome:C_jacchus3.2.1:14:1:108792865:1	33551296	33559966	R	notochord homeobox [Source:HGNC Symbol;Acc:HGNC:31839]
ENSCJAG00000001329	KNOWN	protein_coding	TBC1D15	chromosome:C_jacchus3.2.1:9:1:124281992:1	61463862	61544329	D	TBC1 domain family member 15 isoform 1 {ECO:0000313|EMBL:JAB05675.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002398}  [Source:UniProtKB/TrEMBL;Acc:F7I9H4]
ENSCJAG00000003966	KNOWN_BY_PROJECTION	protein_coding	SMYD5	chromosome:C_jacchus3.2.1:14:1:108792865:1	33533085	33547299	R	SMYD family member 5 [Source:HGNC Symbol;Acc:HGNC:16258]
ENSCJAG00000006851	KNOWN_BY_PROJECTION	protein_coding	ZDHHC13	chromosome:C_jacchus3.2.1:11:1:130397257:1	82451335	82506669	D	zinc finger, DHHC-type containing 13 [Source:HGNC Symbol;Acc:HGNC:18413]
ENSCJAG00000005126	KNOWN	protein_coding	RASSF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	26042427	26052111	R	Ras association domain-containing protein 1 isoform C {ECO:0000313|EMBL:JAB01896.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009378}  [Source:UniProtKB/TrEMBL;Acc:F7H2Q9]
ENSCJAG00000003970	KNOWN	protein_coding	PRADC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	33525512	33530606	D	Protease-associated domain-containing protein 1 {ECO:0000313|EMBL:JAB04994.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007205}  [Source:UniProtKB/TrEMBL;Acc:F6PTW1]
ENSCJAG00000006924	KNOWN_BY_PROJECTION	protein_coding	MRGPRX2	chromosome:C_jacchus3.2.1:11:1:130397257:1	82396515	82402482	R	MAS-related GPR, member X2 [Source:HGNC Symbol;Acc:HGNC:17983]
ENSCJAG00000001362	KNOWN_BY_PROJECTION	protein_coding	RAB21	chromosome:C_jacchus3.2.1:9:1:124281992:1	61359167	61389710	D	RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
ENSCJAG00000006050	KNOWN	protein_coding	KDM5B	chromosome:C_jacchus3.2.1:19:1:49578535:1	24406169	24496023	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011422}  [Source:UniProtKB/TrEMBL;Acc:F7HNX8]
ENSCJAG00000001368	NOVEL	protein_coding	ENSCJAG00000001368	chromosome:C_jacchus3.2.1:9:1:124281992:1	61322395	61323702	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052149}  [Source:UniProtKB/TrEMBL;Acc:F7I0D1]
ENSCJAG00000005120	KNOWN	protein_coding	TUSC2	chromosome:C_jacchus3.2.1:15:1:98464013:1	26037594	26040883	R	Tumor suppressor candidate 2 {ECO:0000313|EMBL:JAB06812.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009345}  [Source:UniProtKB/TrEMBL;Acc:F7HIA9]
ENSCJAG00000005109	KNOWN	protein_coding	HYAL2	chromosome:C_jacchus3.2.1:15:1:98464013:1	26028372	26034635	R	Hyaluronidase {ECO:0000256|RuleBase:RU610713}  [Source:UniProtKB/TrEMBL;Acc:F7HIH6]
ENSCJAG00000009895	KNOWN_BY_PROJECTION	protein_coding	GBA2	chromosome:C_jacchus3.2.1:1:1:210400635:1	137512696	137524916	R	glucosidase, beta (bile acid) 2 [Source:HGNC Symbol;Acc:HGNC:18986]
ENSCJAG00000015113	KNOWN	protein_coding	RASGEF1B	chromosome:C_jacchus3.2.1:3:1:190850796:1	112900371	112941706	D	Ras-GEF domain-containing family member 1B {ECO:0000313|EMBL:JAB13138.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027918}  [Source:UniProtKB/TrEMBL;Acc:F7E762]
ENSCJAG00000005093	KNOWN	protein_coding	HYAL1	chromosome:C_jacchus3.2.1:15:1:98464013:1	26019769	26023599	R	Hyaluronidase {ECO:0000256|RuleBase:RU610713}  [Source:UniProtKB/TrEMBL;Acc:F7D6C8]
ENSCJAG00000001936	KNOWN	protein_coding	SEMA6D	chromosome:C_jacchus3.2.1:10:1:132174527:1	24499681	24876752	D	Semaphorin-6D isoform 3 {ECO:0000313|EMBL:JAB47648.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003618}  [Source:UniProtKB/TrEMBL;Acc:F7H9Y3]
ENSCJAG00000022906	NOVEL	protein_coding	MGRG1	chromosome:C_jacchus3.2.1:11:1:130397257:1	82343823	82361334	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041467}  [Source:UniProtKB/TrEMBL;Acc:F7H5A0]
ENSCJAG00000006928	NOVEL	protein_coding	ENSCJAG00000006928	chromosome:C_jacchus3.2.1:11:1:130397257:1	82264729	82271471	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012825}  [Source:UniProtKB/TrEMBL;Acc:F6PX25]
ENSCJAG00000037363	KNOWN_BY_PROJECTION	protein_coding	NAT6	chromosome:C_jacchus3.2.1:15:1:98464013:1	26016246	26019330	R	N-acetyltransferase 6 (GCN5-related) [Source:HGNC Symbol;Acc:HGNC:30252]
ENSCJAG00000006933	NOVEL	protein_coding	ENSCJAG00000006933	chromosome:C_jacchus3.2.1:11:1:130397257:1	82245329	82249482	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012831}  [Source:UniProtKB/TrEMBL;Acc:F6PMX3]
ENSCJAG00000005065	KNOWN	protein_coding	HYAL3	chromosome:C_jacchus3.2.1:15:1:98464013:1	26012360	26019330	R	Hyaluronidase {ECO:0000256|RuleBase:RU610713}  [Source:UniProtKB/TrEMBL;Acc:F6VE08]
ENSCJAG00000019005	KNOWN_BY_PROJECTION	protein_coding	TET1	chromosome:C_jacchus3.2.1:12:1:121768101:1	55570606	55709631	R	tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
ENSCJAG00000015150	NOVEL	pseudogene	ENSCJAG00000015150	chromosome:C_jacchus3.2.1:3:1:190850796:1	112892403	112892788	R	<no descrition>
ENSCJAG00000019004	NOVEL	protein_coding	ENSCJAG00000019004	chromosome:C_jacchus3.2.1:12:1:121768101:1	55558735	55559289	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035303}  [Source:UniProtKB/TrEMBL;Acc:F7I8S9]
ENSCJAG00000006935	KNOWN_BY_PROJECTION	protein_coding	IGSF22	chromosome:C_jacchus3.2.1:11:1:130397257:1	82218888	82242448	R	immunoglobulin superfamily, member 22 [Source:HGNC Symbol;Acc:HGNC:26750]
ENSCJAG00000006030	KNOWN_BY_PROJECTION	protein_coding	SYT2	chromosome:C_jacchus3.2.1:19:1:49578535:1	24279043	24389896	R	synaptotagmin II [Source:HGNC Symbol;Acc:HGNC:11510]
ENSCJAG00000001375	KNOWN_BY_PROJECTION	protein_coding	TMEM19	chromosome:C_jacchus3.2.1:9:1:124281992:1	61286134	61300365	D	transmembrane protein 19 [Source:HGNC Symbol;Acc:HGNC:25605]
ENSCJAG00000006025	NOVEL	protein_coding	ENSCJAG00000006025	chromosome:C_jacchus3.2.1:19:1:49578535:1	24111911	24113073	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011070}  [Source:UniProtKB/TrEMBL;Acc:F7IG10]
ENSCJAG00000004993	KNOWN	protein_coding	IFRD2	chromosome:C_jacchus3.2.1:15:1:98464013:1	26007266	26012125	R	Interferon-related developmental regulator 2 {ECO:0000313|EMBL:JAB22489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009224}  [Source:UniProtKB/TrEMBL;Acc:F7IB11]
ENSCJAG00000001382	KNOWN	protein_coding	THAP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	61264464	61280841	D	THAP domain-containing protein 2 {ECO:0000313|EMBL:JAB46299.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002434}  [Source:UniProtKB/TrEMBL;Acc:F7I296]
ENSCJAG00000015154	NOVEL	protein_coding	ENSCJAG00000015154	chromosome:C_jacchus3.2.1:3:1:190850796:1	112311637	112321368	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027926}  [Source:UniProtKB/TrEMBL;Acc:F7DSN3]
ENSCJAG00000015156	KNOWN_BY_PROJECTION	protein_coding	NCAPG2	chromosome:C_jacchus3.2.1:3:1:190850796:1	112126822	112163274	D	non-SMC condensin II complex, subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]
ENSCJAG00000035332	NOVEL	protein_coding	ENSCJAG00000035332	chromosome:C_jacchus3.2.1:3:1:190850796:1	111950214	111951412	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048093}  [Source:UniProtKB/TrEMBL;Acc:F7EYD3]
ENSCJAG00000015162	NOVEL	pseudogene	ENSCJAG00000015162	chromosome:C_jacchus3.2.1:3:1:190850796:1	112028794	112029379	D	<no descrition>
ENSCJAG00000006979	NOVEL	protein_coding	ENSCJAG00000006979	chromosome:C_jacchus3.2.1:11:1:130397257:1	82173442	82173925	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012936}  [Source:UniProtKB/TrEMBL;Acc:F6RQR0]
ENSCJAG00000023136	KNOWN_BY_PROJECTION	protein_coding	C1orf74	chromosome:C_jacchus3.2.1:19:1:49578535:1	31880830	31883366	R	chromosome 1 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:26319]
ENSCJAG00000015165	NOVEL	protein_coding	ENSCJAG00000015165	chromosome:C_jacchus3.2.1:3:1:190850796:1	111883575	111904535	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028000}  [Source:UniProtKB/TrEMBL;Acc:F6Y675]
ENSCJAG00000004984	KNOWN_BY_PROJECTION	protein_coding	LSMEM2	chromosome:C_jacchus3.2.1:15:1:98464013:1	26000124	26007645	D	leucine-rich single-pass membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:26781]
ENSCJAG00000006985	KNOWN	protein_coding	SPTY2D1	chromosome:C_jacchus3.2.1:11:1:130397257:1	82121717	82159914	R	Protein SPT2 homolog {ECO:0000313|EMBL:JAB03039.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048675}  [Source:UniProtKB/TrEMBL;Acc:F6SPT0]
ENSCJAG00000000964	KNOWN_BY_PROJECTION	protein_coding	MYO15A	chromosome:C_jacchus3.2.1:5:1:159171411:1	64793215	64853349	R	myosin XVA [Source:HGNC Symbol;Acc:HGNC:7594]
ENSCJAG00000004845	KNOWN_BY_PROJECTION	protein_coding	SEMA3B	chromosome:C_jacchus3.2.1:15:1:98464013:1	25986231	25998361	D	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
ENSCJAG00000012209	KNOWN_BY_PROJECTION	protein_coding	MLN	chromosome:C_jacchus3.2.1:4:1:171630274:1	34619436	34628302	R	motilin [Source:HGNC Symbol;Acc:HGNC:7141]
ENSCJAG00000004925	KNOWN	protein_coding	GNAI2	chromosome:C_jacchus3.2.1:15:1:98464013:1	25943031	26374090	D	Guanine nucleotide-binding protein G(I) subunit alpha-2 isoform 1 {ECO:0000313|EMBL:JAB05477.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009095}  [Source:UniProtKB/TrEMBL;Acc:F7HZB3]
ENSCJAG00000002023	NOVEL	pseudogene	ENSCJAG00000002023	chromosome:C_jacchus3.2.1:10:1:132174527:1	23603484	23604219	D	<no descrition>
ENSCJAG00000001384	KNOWN	protein_coding	ZFC3H1	chromosome:C_jacchus3.2.1:9:1:124281992:1	61208508	61264429	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002519}; Zinc finger C3H1 domain-containing protein {ECO:0000313|EMBL:JAB10606.1}  [Source:UniProtKB/TrEMBL;Acc:F7INE6]
ENSCJAG00000007006	KNOWN	protein_coding	UEVLD	chromosome:C_jacchus3.2.1:11:1:130397257:1	82056686	82121140	R	Ubiquitin-conjugating enzyme E2 variant 3 isoform a {ECO:0000313|EMBL:JAB04905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013012}  [Source:UniProtKB/TrEMBL;Acc:F7B384]
ENSCJAG00000000974	KNOWN_BY_PROJECTION	protein_coding	ALKBH5	chromosome:C_jacchus3.2.1:5:1:159171411:1	64762691	64788581	R	AlkB family member 5, RNA demethylase [Source:HGNC Symbol;Acc:HGNC:25996]
ENSCJAG00000012200	KNOWN_BY_PROJECTION	protein_coding	LEMD2	chromosome:C_jacchus3.2.1:4:1:171630274:1	34595883	34613651	R	LEM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21244]
ENSCJAG00000002026	KNOWN	protein_coding	SQRDL	chromosome:C_jacchus3.2.1:10:1:132174527:1	22608674	22667121	D	Sulfide:quinone oxidoreductase, mitochondrial {ECO:0000313|EMBL:JAB06382.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003664}  [Source:UniProtKB/TrEMBL;Acc:F7GZJ6]
ENSCJAG00000002038	KNOWN_BY_PROJECTION	protein_coding	BLOC1S6	chromosome:C_jacchus3.2.1:10:1:132174527:1	22573245	22594159	D	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:HGNC:8549]
ENSCJAG00000004893	KNOWN	protein_coding	SLC38A3	chromosome:C_jacchus3.2.1:15:1:98464013:1	25920941	25936805	D	Sodium-coupled neutral amino acid transporter 3 {ECO:0000313|EMBL:JAB18846.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008989}  [Source:UniProtKB/TrEMBL;Acc:F7I3C7]
ENSCJAG00000035371	NOVEL	protein_coding	ENSCJAG00000035371	chromosome:C_jacchus3.2.1:10:1:132174527:1	22552125	22552476	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051152}  [Source:UniProtKB/TrEMBL;Acc:F6Z3R6]
ENSCJAG00000033646	NOVEL	pseudogene	ENSCJAG00000033646	chromosome:C_jacchus3.2.1:10:1:132174527:1	22540274	22540545	D	<no descrition>
ENSCJAG00000005949	KNOWN	protein_coding	PPP1R12B	chromosome:C_jacchus3.2.1:19:1:49578535:1	24019629	24264586	D	Protein phosphatase 1 regulatory subunit 12 {ECO:0000256|PIRNR:PIRNR038141}  [Source:UniProtKB/TrEMBL;Acc:F7IID3]
ENSCJAG00000015197	KNOWN	protein_coding	HNRPDL	chromosome:C_jacchus3.2.1:3:1:190850796:1	111824484	111831498	D	Heterogeneous nuclear ribonucleoprotein D-like isoform a {ECO:0000313|EMBL:JAB10509.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028096}  [Source:UniProtKB/TrEMBL;Acc:F6UJD1]
ENSCJAG00000004870	KNOWN_BY_PROJECTION	protein_coding	GNAT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	25907451	25912381	D	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:4393]
ENSCJAG00000012184	KNOWN_BY_PROJECTION	protein_coding	IP6K3	chromosome:C_jacchus3.2.1:4:1:171630274:1	34543343	34570509	R	inositol hexakisphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17269]
ENSCJAG00000004851	KNOWN_BY_PROJECTION	protein_coding	SEMA3F	chromosome:C_jacchus3.2.1:15:1:98464013:1	25874065	25904911	D	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:HGNC:10728]
ENSCJAG00000000978	KNOWN_BY_PROJECTION	protein_coding	LLGL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	64724463	64744216	R	lethal giant larvae homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:6628]
ENSCJAG00000009695	KNOWN_BY_PROJECTION	protein_coding	TLN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	137472657	137507946	R	talin 1 [Source:HGNC Symbol;Acc:HGNC:11845]
ENSCJAG00000005917	KNOWN	protein_coding	UBE2T	chromosome:C_jacchus3.2.1:19:1:49578535:1	24000706	24012045	R	Ubiquitin-conjugating enzyme E2 T {ECO:0000313|EMBL:JAB24291.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010925}  [Source:UniProtKB/TrEMBL;Acc:F7IHR0]
ENSCJAG00000004740	KNOWN	protein_coding	RBM5	chromosome:C_jacchus3.2.1:15:1:98464013:1	25795053	25828826	D	RNA-binding protein 5 {ECO:0000313|EMBL:JAB09331.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008822}  [Source:UniProtKB/TrEMBL;Acc:F7IHJ6]
ENSCJAG00000009873	KNOWN_BY_PROJECTION	protein_coding	CREB3	chromosome:C_jacchus3.2.1:1:1:210400635:1	137472391	137512839	D	cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
ENSCJAG00000003978	KNOWN	protein_coding	CCT7	chromosome:C_jacchus3.2.1:14:1:108792865:1	33507447	33524500	R	T-complex protein 1 subunit eta isoform a {ECO:0000313|EMBL:JAB11670.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007467}  [Source:UniProtKB/TrEMBL;Acc:F6TEX0]
ENSCJAG00000005906	KNOWN_BY_PROJECTION	protein_coding	LGR6	chromosome:C_jacchus3.2.1:19:1:49578535:1	23866865	23985553	D	leucine-rich repeat containing G protein-coupled receptor 6 [Source:HGNC Symbol;Acc:HGNC:19719]
ENSCJAG00000018912	KNOWN	protein_coding	CCAR1	chromosome:C_jacchus3.2.1:12:1:121768101:1	55419363	55549495	R	Cell division cycle and apoptosis regulator protein 1 {ECO:0000313|EMBL:JAB06103.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035302}  [Source:UniProtKB/TrEMBL;Acc:F7I8T0]
ENSCJAG00000007067	KNOWN_BY_PROJECTION	protein_coding	LDHAL6A	chromosome:C_jacchus3.2.1:11:1:130397257:1	81986908	82054673	D	lactate dehydrogenase A-like 6A [Source:HGNC Symbol;Acc:HGNC:28335]
ENSCJAG00000005882	KNOWN_BY_PROJECTION	protein_coding	PTPN7	chromosome:C_jacchus3.2.1:19:1:49578535:1	23813068	23828042	R	protein tyrosine phosphatase, non-receptor type 7 [Source:HGNC Symbol;Acc:HGNC:9659]
ENSCJAG00000007032	KNOWN_BY_PROJECTION	protein_coding	TSG101	chromosome:C_jacchus3.2.1:11:1:130397257:1	82018048	82051513	R	tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]
ENSCJAG00000004620	KNOWN	protein_coding	RBM6	chromosome:C_jacchus3.2.1:15:1:98464013:1	25655149	25792304	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050875}  [Source:UniProtKB/TrEMBL;Acc:F7F8V2]
ENSCJAG00000005865	KNOWN	protein_coding	ARL8A	chromosome:C_jacchus3.2.1:19:1:49578535:1	23794623	23809391	R	ADP-ribosylation factor-like protein 8A isoform 1 {ECO:0000313|EMBL:JAB10332.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010794}  [Source:UniProtKB/TrEMBL;Acc:F7I8B1]
ENSCJAG00000007081	KNOWN_BY_PROJECTION	protein_coding	LDHC	chromosome:C_jacchus3.2.1:11:1:130397257:1	81939475	81982776	D	lactate dehydrogenase C [Source:HGNC Symbol;Acc:HGNC:6544]
ENSCJAG00000005857	KNOWN_BY_PROJECTION	protein_coding	GPR37L1	chromosome:C_jacchus3.2.1:19:1:49578535:1	23780616	23788880	D	G protein-coupled receptor 37 like 1 [Source:HGNC Symbol;Acc:HGNC:14923]
ENSCJAG00000004579	KNOWN_BY_PROJECTION	protein_coding	MON1A	chromosome:C_jacchus3.2.1:15:1:98464013:1	25627900	25646352	R	MON1 secretory trafficking family member A [Source:HGNC Symbol;Acc:HGNC:28207]
ENSCJAG00000009627	KNOWN	protein_coding	TPM2	chromosome:C_jacchus3.2.1:1:1:210400635:1	137452751	137461101	R	Tropomyosin beta chain isoform 2 {ECO:0000313|EMBL:JAB27314.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017750}  [Source:UniProtKB/TrEMBL;Acc:F7I9U1]
ENSCJAG00000001428	KNOWN_BY_PROJECTION	protein_coding	LGR5	chromosome:C_jacchus3.2.1:9:1:124281992:1	61035643	61180752	D	leucine-rich repeat containing G protein-coupled receptor 5 [Source:HGNC Symbol;Acc:HGNC:4504]
ENSCJAG00000002049	KNOWN	protein_coding	SLC30A4	chromosome:C_jacchus3.2.1:10:1:132174527:1	22481498	22509586	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003718}; Zinc transporter 4 {ECO:0000313|EMBL:JAB02994.1}  [Source:UniProtKB/TrEMBL;Acc:F7EZU8]
ENSCJAG00000012180	KNOWN_BY_PROJECTION	protein_coding	UQCC2	chromosome:C_jacchus3.2.1:4:1:171630274:1	34517368	34533580	R	ubiquinol-cytochrome c reductase complex assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:21237]
ENSCJAG00000004544	KNOWN_BY_PROJECTION	protein_coding	MST1R	chromosome:C_jacchus3.2.1:15:1:98464013:1	25606131	25622239	R	macrophage stimulating 1 receptor (c-met-related tyrosine kinase) [Source:HGNC Symbol;Acc:HGNC:7381]
ENSCJAG00000012177	NOVEL	pseudogene	ENSCJAG00000012177	chromosome:C_jacchus3.2.1:4:1:171630274:1	34514888	34515528	R	<no descrition>
ENSCJAG00000004115	KNOWN_BY_PROJECTION	protein_coding	FBXO41	chromosome:C_jacchus3.2.1:14:1:108792865:1	33490621	33501484	D	F-box protein 41 [Source:HGNC Symbol;Acc:HGNC:29409]
ENSCJAG00000000999	KNOWN_BY_PROJECTION	protein_coding	FLII	chromosome:C_jacchus3.2.1:5:1:159171411:1	64707400	64724134	D	flightless I homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:3750]
ENSCJAG00000002064	KNOWN	protein_coding	C15ORF48	chromosome:C_jacchus3.2.1:10:1:132174527:1	22424615	22427923	D	Normal mucosa of esophagus-specific gene 1 protein {ECO:0000313|EMBL:JAB07273.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003724}  [Source:UniProtKB/TrEMBL;Acc:F7EZS1]
ENSCJAG00000004136	KNOWN_BY_PROJECTION	protein_coding	EGR4	chromosome:C_jacchus3.2.1:14:1:108792865:1	33463122	33466219	D	early growth response 4 [Source:HGNC Symbol;Acc:HGNC:3241]
ENSCJAG00000001462	KNOWN	protein_coding	TSPAN8	chromosome:C_jacchus3.2.1:9:1:124281992:1	60665136	60695940	R	Tetraspanin-8 {ECO:0000313|EMBL:JAB04859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002618}  [Source:UniProtKB/TrEMBL;Acc:F7I4K3]
ENSCJAG00000031165	NOVEL	pseudogene	ENSCJAG00000031165	chromosome:C_jacchus3.2.1:14:1:108792865:1	33384133	33384644	R	<no descrition>
ENSCJAG00000007094	NOVEL	protein_coding	ENSCJAG00000007094	chromosome:C_jacchus3.2.1:11:1:130397257:1	81919967	81935275	D	L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496}  [Source:UniProtKB/TrEMBL;Acc:F6ZHQ7]
ENSCJAG00000031181	NOVEL	protein_coding	ENSCJAG00000031181	chromosome:C_jacchus3.2.1:15:1:98464013:1	25593025	25596460	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051997}  [Source:UniProtKB/TrEMBL;Acc:F6YEL7]
ENSCJAG00000018901	KNOWN_BY_PROJECTION	protein_coding	STOX1	chromosome:C_jacchus3.2.1:12:1:121768101:1	55340513	55390203	R	storkhead box 1 [Source:HGNC Symbol;Acc:HGNC:23508]
ENSCJAG00000012111	KNOWN_BY_PROJECTION	protein_coding	ITPR3	chromosome:C_jacchus3.2.1:4:1:171630274:1	34479036	34515613	D	inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
ENSCJAG00000015251	KNOWN_BY_PROJECTION	protein_coding	ENOPH1	chromosome:C_jacchus3.2.1:3:1:190850796:1	111777008	111824136	R	enolase-phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:24599]
ENSCJAG00000004464	KNOWN	protein_coding	CAMKV	chromosome:C_jacchus3.2.1:15:1:98464013:1	25576832	25588802	R	CaM kinase-like vesicle-associated protein {ECO:0000313|EMBL:JAB22746.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008216}  [Source:UniProtKB/TrEMBL;Acc:F7IHW8]
ENSCJAG00000004144	KNOWN_BY_PROJECTION	protein_coding	ALMS1	chromosome:C_jacchus3.2.1:14:1:108792865:1	33132166	33368233	R	Alstrom syndrome 1 [Source:HGNC Symbol;Acc:HGNC:428]
ENSCJAG00000015264	KNOWN	protein_coding	TMEM150C	chromosome:C_jacchus3.2.1:3:1:190850796:1	111680357	111760483	D	Transmembrane protein 150C {ECO:0000313|EMBL:JAB02656.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028117}  [Source:UniProtKB/TrEMBL;Acc:F7BRN5]
ENSCJAG00000009601	KNOWN_BY_PROJECTION	protein_coding	CA9	chromosome:C_jacchus3.2.1:1:1:210400635:1	137444374	137451847	D	carbonic anhydrase IX [Source:HGNC Symbol;Acc:HGNC:1383]
ENSCJAG00000016059	NOVEL	protein_coding	ENSCJAG00000016059	chromosome:C_jacchus3.2.1:4:1:171630274:1	34409230	34410568	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029546}  [Source:UniProtKB/TrEMBL;Acc:F7IC89]
ENSCJAG00000004791	KNOWN	protein_coding	SCD5	chromosome:C_jacchus3.2.1:3:1:190850796:1	111436972	111865861	D	Stearoyl-CoA desaturase 5 isoform a {ECO:0000313|EMBL:JAB12754.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008742}  [Source:UniProtKB/TrEMBL;Acc:F7HMC4]
ENSCJAG00000005849	NOVEL	protein_coding	ENSCJAG00000005849	chromosome:C_jacchus3.2.1:19:1:49578535:1	23719558	23724655	R	Armadillo repeat-containing protein 1 {ECO:0000256|PIRNR:PIRNR013899}  [Source:UniProtKB/TrEMBL;Acc:F7IHS4]
ENSCJAG00000004162	KNOWN	protein_coding	TPRKB	chromosome:C_jacchus3.2.1:14:1:108792865:1	33064544	33070692	D	TP53RK-binding protein {ECO:0000313|EMBL:JAB18064.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007560}  [Source:UniProtKB/TrEMBL;Acc:F6R7Y8]
ENSCJAG00000005842	NOVEL	pseudogene	ENSCJAG00000005842	chromosome:C_jacchus3.2.1:19:1:49578535:1	23718226	23719012	D	<no descrition>
ENSCJAG00000009599	NOVEL	pseudogene	ENSCJAG00000009599	chromosome:C_jacchus3.2.1:1:1:210400635:1	137436210	137436577	D	<no descrition>
ENSCJAG00000008268	NOVEL	protein_coding	ENSCJAG00000008268	chromosome:C_jacchus3.2.1:14:1:108792865:1	33040716	33044318	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015265}  [Source:UniProtKB/TrEMBL;Acc:F7G646]
ENSCJAG00000009573	KNOWN	protein_coding	ARHGEF39	chromosome:C_jacchus3.2.1:1:1:210400635:1	137428411	137435744	R	Rho guanine nucleotide exchange factor 39 {ECO:0000313|EMBL:JAB06401.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017572}  [Source:UniProtKB/TrEMBL;Acc:F7IA19]
ENSCJAG00000017912	NOVEL	pseudogene	ENSCJAG00000017912	chromosome:C_jacchus3.2.1:14:1:108792865:1	33032847	33033626	R	<no descrition>
ENSCJAG00000001046	KNOWN_BY_PROJECTION	protein_coding	MIEF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	64700614	64705969	R	mitochondrial elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:17920]
ENSCJAG00000002067	KNOWN	protein_coding	SPATA5L1	chromosome:C_jacchus3.2.1:10:1:132174527:1	22396881	22417183	D	Spermatogenesis-associated protein 5-like protein 1 {ECO:0000313|EMBL:JAB39559.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003747}  [Source:UniProtKB/TrEMBL;Acc:F7EKW1]
ENSCJAG00000009538	KNOWN_BY_PROJECTION	protein_coding	CCDC107	chromosome:C_jacchus3.2.1:1:1:210400635:1	137427949	137431933	D	coiled-coil domain containing 107 [Source:HGNC Symbol;Acc:HGNC:28465]
ENSCJAG00000009533	KNOWN_BY_PROJECTION	protein_coding	SIT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	137421531	137422862	R	signaling threshold regulating transmembrane adaptor 1 [Source:HGNC Symbol;Acc:HGNC:17710]
ENSCJAG00000018844	KNOWN	protein_coding	DDX50	chromosome:C_jacchus3.2.1:12:1:121768101:1	55284010	55327675	R	ATP-dependent RNA helicase DDX50 {ECO:0000313|EMBL:JAB09058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035086}  [Source:UniProtKB/TrEMBL;Acc:F7I8W5]
ENSCJAG00000017897	KNOWN	protein_coding	STAMBP	chromosome:C_jacchus3.2.1:14:1:108792865:1	32993156	33025272	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033060}  [Source:UniProtKB/TrEMBL;Acc:F6TUH8]
ENSCJAG00000009503	KNOWN_BY_PROJECTION	protein_coding	CD72	chromosome:C_jacchus3.2.1:1:1:210400635:1	137392489	137419050	R	CD72 molecule [Source:HGNC Symbol;Acc:HGNC:1696]
ENSCJAG00000012871	NOVEL	pseudogene	ENSCJAG00000012871	chromosome:C_jacchus3.2.1:12:1:121768101:1	55241316	55242715	R	<no descrition>
ENSCJAG00000002080	KNOWN	protein_coding	GATM	chromosome:C_jacchus3.2.1:10:1:132174527:1	22351397	22370168	R	Glycine amidinotransferase, mitochondrial {ECO:0000313|EMBL:JAB08371.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003821}  [Source:UniProtKB/TrEMBL;Acc:F7GZ40]
ENSCJAG00000005802	KNOWN_BY_PROJECTION	protein_coding	ELF3	chromosome:C_jacchus3.2.1:19:1:49578535:1	23648600	23654720	D	E74-like factor 3 (ets domain transcription factor, epithelial-specific ) [Source:HGNC Symbol;Acc:HGNC:3318]
ENSCJAG00000015891	KNOWN_BY_PROJECTION	protein_coding	GRM7	chromosome:C_jacchus3.2.1:15:1:98464013:1	58880950	59503873	D	glutamate receptor, metabotropic 7 [Source:HGNC Symbol;Acc:HGNC:4599]
ENSCJAG00000010075	NOVEL	protein_coding	ENSCJAG00000010075	chromosome:C_jacchus3.2.1:14:1:108792865:1	52243964	52246623	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018515}  [Source:UniProtKB/TrEMBL;Acc:F7F3P1]
ENSCJAG00000010070	NOVEL	protein_coding	ENSCJAG00000010070	chromosome:C_jacchus3.2.1:14:1:108792865:1	52234368	52240289	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018505}  [Source:UniProtKB/TrEMBL;Acc:F7F461]
ENSCJAG00000015890	NOVEL	pseudogene	ENSCJAG00000015890	chromosome:C_jacchus3.2.1:15:1:98464013:1	58468404	58468720	R	<no descrition>
ENSCJAG00000010057	NOVEL	protein_coding	ENSCJAG00000010057	chromosome:C_jacchus3.2.1:14:1:108792865:1	52159295	52206612	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018489}  [Source:UniProtKB/TrEMBL;Acc:F7FWI5]
ENSCJAG00000010052	NOVEL	protein_coding	ENSCJAG00000010052	chromosome:C_jacchus3.2.1:14:1:108792865:1	52148490	52152032	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018460}  [Source:UniProtKB/TrEMBL;Acc:F7GJF2]
ENSCJAG00000008359	KNOWN	protein_coding	BTAF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	78783414	78882800	D	TATA-binding protein-associated factor 172 {ECO:0000313|EMBL:JAB27926.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015613}  [Source:UniProtKB/TrEMBL;Acc:F7H9R4]
ENSCJAG00000004415	KNOWN_BY_PROJECTION	protein_coding	TRAIP	chromosome:C_jacchus3.2.1:15:1:98464013:1	25544653	25575084	R	TRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]
ENSCJAG00000012876	KNOWN_BY_PROJECTION	protein_coding	DDX21	chromosome:C_jacchus3.2.1:12:1:121768101:1	55170551	55199158	R	DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]
ENSCJAG00000001058	KNOWN_BY_PROJECTION	protein_coding	TOP3A	chromosome:C_jacchus3.2.1:5:1:159171411:1	64653130	64692431	D	topoisomerase (DNA) III alpha [Source:HGNC Symbol;Acc:HGNC:11992]
ENSCJAG00000012896	KNOWN	protein_coding	KIAA1279	chromosome:C_jacchus3.2.1:12:1:121768101:1	55136435	55163186	R	KIF1-binding protein {ECO:0000313|EMBL:JAB11665.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023634}  [Source:UniProtKB/TrEMBL;Acc:F7HIC6]
ENSCJAG00000007129	KNOWN	protein_coding	GTF2H1	chromosome:C_jacchus3.2.1:11:1:130397257:1	81835832	81889214	D	General transcription factor IIH subunit 1 {ECO:0000313|EMBL:JAB09406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013266}  [Source:UniProtKB/TrEMBL;Acc:F6XW59]
ENSCJAG00000017882	KNOWN_BY_PROJECTION	protein_coding	ACTG2	chromosome:C_jacchus3.2.1:14:1:108792865:1	32939020	32970300	R	actin, gamma 2, smooth muscle, enteric [Source:HGNC Symbol;Acc:HGNC:145]
ENSCJAG00000012904	KNOWN	protein_coding	SRGN	chromosome:C_jacchus3.2.1:12:1:121768101:1	55066117	55076822	R	Serglycin {ECO:0000313|EMBL:JAB01722.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023642}  [Source:UniProtKB/TrEMBL;Acc:F7HD78]
ENSCJAG00000001062	KNOWN	protein_coding	SMCR8	chromosome:C_jacchus3.2.1:5:1:159171411:1	64640784	64652801	R	Smith-Magenis syndrome chromosomal region candidate gene 8 protein {ECO:0000313|EMBL:JAB10645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001816}  [Source:UniProtKB/TrEMBL;Acc:F7CB99]
ENSCJAG00000005745	KNOWN	protein_coding	RNPEP	chromosome:C_jacchus3.2.1:19:1:49578535:1	23616870	23643215	D	Aminopeptidase B {ECO:0000313|EMBL:JAB02588.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010642}  [Source:UniProtKB/TrEMBL;Acc:F7HWQ0]
ENSCJAG00000004368	KNOWN_BY_PROJECTION	protein_coding	UBA7	chromosome:C_jacchus3.2.1:15:1:98464013:1	25522879	25532185	R	ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
ENSCJAG00000017868	KNOWN	protein_coding	DGUOK	chromosome:C_jacchus3.2.1:14:1:108792865:1	32903580	32933293	R	Deoxyguanosine kinase, mitochondrial isoform a {ECO:0000313|EMBL:JAB04380.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032989}  [Source:UniProtKB/TrEMBL;Acc:F7FVS9]
ENSCJAG00000009457	KNOWN	protein_coding	TESK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	137387755	137392550	D	Dual specificity testis-specific protein kinase 1 {ECO:0000313|EMBL:JAB16744.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017403}  [Source:UniProtKB/TrEMBL;Acc:F7I2Z2]
ENSCJAG00000005709	KNOWN	protein_coding	TIMM17A	chromosome:C_jacchus3.2.1:19:1:49578535:1	23593849	23606826	D	Mitochondrial import inner membrane translocase subunit Tim17-A {ECO:0000313|EMBL:JAB06301.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010525}  [Source:UniProtKB/TrEMBL;Acc:F7IHY3]
ENSCJAG00000016047	KNOWN	protein_coding	BAK1	chromosome:C_jacchus3.2.1:4:1:171630274:1	34396868	34404219	R	Bcl-2 homologous antagonist/killer {ECO:0000313|EMBL:JAB09093.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029530}  [Source:UniProtKB/TrEMBL;Acc:F7IEN6]
ENSCJAG00000005698	NOVEL	protein_coding	ENSCJAG00000005698	chromosome:C_jacchus3.2.1:19:1:49578535:1	23527998	23585409	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010465}  [Source:UniProtKB/TrEMBL;Acc:F7HNI4]
ENSCJAG00000001472	KNOWN	protein_coding	PTPRR	chromosome:C_jacchus3.2.1:9:1:124281992:1	60151689	60446561	R	Receptor-type tyrosine-protein phosphatase R isoform 1 {ECO:0000313|EMBL:JAB31277.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002699}  [Source:UniProtKB/TrEMBL;Acc:F7HXD1]
ENSCJAG00000009448	KNOWN_BY_PROJECTION	protein_coding	FAM166B	chromosome:C_jacchus3.2.1:1:1:210400635:1	137346548	137348451	R	family with sequence similarity 166, member B [Source:HGNC Symbol;Acc:HGNC:34242]
ENSCJAG00000004364	KNOWN_BY_PROJECTION	protein_coding	FAM212A	chromosome:C_jacchus3.2.1:15:1:98464013:1	25521533	25523288	D	family with sequence similarity 212, member A [Source:HGNC Symbol;Acc:HGNC:32480]
ENSCJAG00000013517	NOVEL	protein_coding	ENSCJAG00000013517	chromosome:C_jacchus3.2.1:4:1:171630274:1	34329429	34330824	R	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F6TKI9]
ENSCJAG00000004354	KNOWN_BY_PROJECTION	protein_coding	CDHR4	chromosome:C_jacchus3.2.1:15:1:98464013:1	25507040	25516471	R	cadherin-related family member 4 [Source:HGNC Symbol;Acc:HGNC:34527]
ENSCJAG00000001063	KNOWN_BY_PROJECTION	protein_coding	SHMT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	64596825	64640323	D	serine hydroxymethyltransferase 1 (soluble) [Source:HGNC Symbol;Acc:HGNC:10850]
ENSCJAG00000017853	KNOWN_BY_PROJECTION	protein_coding	TET3	chromosome:C_jacchus3.2.1:14:1:108792865:1	32750938	32812655	R	tet methylcytosine dioxygenase 3 [Source:HGNC Symbol;Acc:HGNC:28313]
ENSCJAG00000021693	NOVEL	pseudogene	ENSCJAG00000021693	chromosome:C_jacchus3.2.1:4:1:171630274:1	34294259	34295254	R	<no descrition>
ENSCJAG00000007185	KNOWN_BY_PROJECTION	protein_coding	HPS5	chromosome:C_jacchus3.2.1:11:1:130397257:1	81791391	81835735	R	Hermansky-Pudlak syndrome 5 [Source:HGNC Symbol;Acc:HGNC:17022]
ENSCJAG00000021692	KNOWN	protein_coding	ZBTB9	chromosome:C_jacchus3.2.1:4:1:171630274:1	34265658	34268598	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040397}; Zinc finger and BTB domain-containing protein 9 {ECO:0000313|EMBL:JAB04691.1}  [Source:UniProtKB/TrEMBL;Acc:F7INP5]
ENSCJAG00000004332	KNOWN	protein_coding	IP6K1	chromosome:C_jacchus3.2.1:15:1:98464013:1	25443105	25502791	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007856}  [Source:UniProtKB/TrEMBL;Acc:F7CMU7]
ENSCJAG00000017844	KNOWN_BY_PROJECTION	protein_coding	BOLA3	chromosome:C_jacchus3.2.1:14:1:108792865:1	32705508	32715524	D	bolA family member 3 [Source:HGNC Symbol;Acc:HGNC:24415]
ENSCJAG00000001088	NOVEL	protein_coding	ENSCJAG00000001088	chromosome:C_jacchus3.2.1:5:1:159171411:1	64573404	64574000	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001866}  [Source:UniProtKB/TrEMBL;Acc:F7BET9]
ENSCJAG00000033564	NOVEL	pseudogene	ENSCJAG00000033564	chromosome:C_jacchus3.2.1:5:1:159171411:1	64555222	64555349	R	<no descrition>
ENSCJAG00000021691	KNOWN_BY_PROJECTION	protein_coding	SYNGAP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	34241437	34256953	D	synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
ENSCJAG00000004306	KNOWN_BY_PROJECTION	protein_coding	GMPPB	chromosome:C_jacchus3.2.1:15:1:98464013:1	25437770	25440225	R	GDP-mannose pyrophosphorylase B [Source:HGNC Symbol;Acc:HGNC:22932]
ENSCJAG00000005672	KNOWN	protein_coding	SHISA4	chromosome:C_jacchus3.2.1:19:1:49578535:1	23519038	23522852	D	Protein shisa-4 {ECO:0000313|EMBL:JAB03756.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010445}  [Source:UniProtKB/TrEMBL;Acc:F7HUA0]
ENSCJAG00000007204	KNOWN	protein_coding	SAA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	81776242	81780006	D	Serum amyloid A protein {ECO:0000256|RuleBase:RU000539}  [Source:UniProtKB/TrEMBL;Acc:F6ZZI4]
ENSCJAG00000031274	NOVEL	protein_coding	ENSCJAG00000031274	chromosome:C_jacchus3.2.1:19:1:49578535:1	23463416	23464318	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045721}  [Source:UniProtKB/TrEMBL;Acc:F6T401]
ENSCJAG00000004302	NOVEL	pseudogene	ENSCJAG00000004302	chromosome:C_jacchus3.2.1:15:1:98464013:1	25433915	25435195	R	<no descrition>
ENSCJAG00000007210	NOVEL	protein_coding	ENSCJAG00000007210	chromosome:C_jacchus3.2.1:11:1:130397257:1	81762898	81766361	R	Serum amyloid A protein {ECO:0000256|RuleBase:RU000539}  [Source:UniProtKB/TrEMBL;Acc:F6ZH70]
ENSCJAG00000012907	KNOWN	protein_coding	VPS26A	chromosome:C_jacchus3.2.1:12:1:121768101:1	54994088	55043899	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023678}; Vacuolar protein sorting-associated protein 26A isoform 1 {ECO:0000313|EMBL:JAB10342.1}  [Source:UniProtKB/TrEMBL;Acc:F7H2J7]
ENSCJAG00000017824	KNOWN	protein_coding	MOB1A	chromosome:C_jacchus3.2.1:14:1:108792865:1	32674222	32698649	D	MOB kinase activator 1A {ECO:0000313|EMBL:JAB06472.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032910}  [Source:UniProtKB/TrEMBL;Acc:F7H5V9]
ENSCJAG00000007213	NOVEL	protein_coding	ENSCJAG00000007213	chromosome:C_jacchus3.2.1:11:1:130397257:1	81749114	81755072	R	Serum amyloid A protein {ECO:0000256|RuleBase:RU000539}  [Source:UniProtKB/TrEMBL;Acc:F6X6T7]
ENSCJAG00000007217	NOVEL	pseudogene	ENSCJAG00000007217	chromosome:C_jacchus3.2.1:11:1:130397257:1	81715197	81716500	D	<no descrition>
ENSCJAG00000017810	KNOWN	protein_coding	MTHFD2	chromosome:C_jacchus3.2.1:14:1:108792865:1	32638159	32655565	R	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial {ECO:0000313|EMBL:JAB09484.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032865}  [Source:UniProtKB/TrEMBL;Acc:F7DH24]
ENSCJAG00000001091	KNOWN	protein_coding	PRPSAP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	64433748	64501417	R	Phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 1 {ECO:0000313|EMBL:JAB10048.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001897}  [Source:UniProtKB/TrEMBL;Acc:F7AD75]
ENSCJAG00000009408	KNOWN_BY_PROJECTION	protein_coding	RUSC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	137321561	137346322	D	RUN and SH3 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23625]
ENSCJAG00000012937	KNOWN	protein_coding	SUPV3L1	chromosome:C_jacchus3.2.1:12:1:121768101:1	54962559	54988949	R	ATP-dependent RNA helicase SUPV3L1, mitochondrial {ECO:0000313|EMBL:JAB05781.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023744}  [Source:UniProtKB/TrEMBL;Acc:F7FZQ5]
ENSCJAG00000009407	NOVEL	pseudogene	ENSCJAG00000009407	chromosome:C_jacchus3.2.1:1:1:210400635:1	137289088	137290331	D	<no descrition>
ENSCJAG00000002124	KNOWN_BY_PROJECTION	protein_coding	SLC28A2	chromosome:C_jacchus3.2.1:10:1:132174527:1	22227306	22263655	D	solute carrier family 28 (concentrative nucleoside transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11002]
ENSCJAG00000007221	KNOWN_BY_PROJECTION	protein_coding	SAAL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	81668903	81696570	R	serum amyloid A-like 1 [Source:HGNC Symbol;Acc:HGNC:25158]
ENSCJAG00000002159	KNOWN_BY_PROJECTION	protein_coding	SHF	chromosome:C_jacchus3.2.1:10:1:132174527:1	22150253	22183131	R	Src homology 2 domain containing F [Source:HGNC Symbol;Acc:HGNC:25116]
ENSCJAG00000005627	KNOWN	protein_coding	IPO9	chromosome:C_jacchus3.2.1:19:1:49578535:1	23452860	23505491	D	Importin-9 {ECO:0000313|EMBL:JAB06733.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010396}  [Source:UniProtKB/TrEMBL;Acc:F6Y960]
ENSCJAG00000004098	KNOWN_BY_PROJECTION	protein_coding	MST1	chromosome:C_jacchus3.2.1:15:1:98464013:1	25400240	25406582	R	macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:HGNC:7380]
ENSCJAG00000007246	KNOWN_BY_PROJECTION	protein_coding	TPH1	chromosome:C_jacchus3.2.1:11:1:130397257:1	81620059	81640869	R	tryptophan hydroxylase 1 [Source:HGNC Symbol;Acc:HGNC:12008]
ENSCJAG00000012961	KNOWN_BY_PROJECTION	protein_coding	HKDC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	54890276	54947379	R	hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
ENSCJAG00000001155	KNOWN	protein_coding	FAM83G	chromosome:C_jacchus3.2.1:5:1:159171411:1	64345399	64378973	D	Protein FAM83G {ECO:0000313|EMBL:JAB06624.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001990}  [Source:UniProtKB/TrEMBL;Acc:F6VWC2]
ENSCJAG00000016499	NOVEL	pseudogene	ENSCJAG00000016499	chromosome:C_jacchus3.2.1:11:1:130397257:1	81511866	81513564	R	<no descrition>
ENSCJAG00000021690	KNOWN_BY_PROJECTION	protein_coding	CUTA	chromosome:C_jacchus3.2.1:4:1:171630274:1	34224478	34226201	R	cutA divalent cation tolerance homolog (E. coli) [Source:HGNC Symbol;Acc:HGNC:21101]
ENSCJAG00000007283	KNOWN_BY_PROJECTION	protein_coding	SERGEF	chromosome:C_jacchus3.2.1:11:1:130397257:1	81366427	81613048	R	secretion regulating guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:17499]
ENSCJAG00000017747	KNOWN_BY_PROJECTION	protein_coding	SLC4A5	chromosome:C_jacchus3.2.1:14:1:108792865:1	32534066	32633576	D	solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
ENSCJAG00000001163	NOVEL	protein_coding	ENSCJAG00000001163	chromosome:C_jacchus3.2.1:5:1:159171411:1	64294596	64324492	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002008}  [Source:UniProtKB/TrEMBL;Acc:F7I7B6]
ENSCJAG00000009258	KNOWN	protein_coding	MYOD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	81294379	81296956	D	Myoblast determination protein 1 {ECO:0000313|EMBL:JAB40696.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044953}  [Source:UniProtKB/TrEMBL;Acc:F7G7P7]
ENSCJAG00000007290	KNOWN_BY_PROJECTION	protein_coding	KCNC1	chromosome:C_jacchus3.2.1:11:1:130397257:1	81310734	81359726	D	potassium channel, voltage gated Shaw related subfamily C, member 1 [Source:HGNC Symbol;Acc:HGNC:6233]
ENSCJAG00000001107	KNOWN_BY_PROJECTION	protein_coding	SLC5A10	chromosome:C_jacchus3.2.1:5:1:159171411:1	64324480	64400611	R	solute carrier family 5 (sodium/sugar cotransporter), member 10 [Source:HGNC Symbol;Acc:HGNC:23155]
ENSCJAG00000015856	KNOWN_BY_PROJECTION	protein_coding	EDEM1	chromosome:C_jacchus3.2.1:15:1:98464013:1	57020688	57050101	D	ER degradation enhancer, mannosidase alpha-like 1 [Source:HGNC Symbol;Acc:HGNC:18967]
ENSCJAG00000015095	KNOWN	protein_coding	MPDU1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74253346	74264353	R	Mannose-P-dolichol utilization defect 1 protein {ECO:0000313|EMBL:JAB07816.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027824}  [Source:UniProtKB/TrEMBL;Acc:F7GNT4]
ENSCJAG00000019993	KNOWN	protein_coding	PACSIN3	chromosome:C_jacchus3.2.1:11:1:130397257:1	110446895	110456488	R	Protein kinase C and casein kinase substrate in neurons protein 3 {ECO:0000313|EMBL:JAB08963.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037202}  [Source:UniProtKB/TrEMBL;Acc:F6YHC0]
ENSCJAG00000008356	KNOWN_BY_PROJECTION	protein_coding	FGFBP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	78757478	78760632	R	fibroblast growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:23428]
ENSCJAG00000015842	KNOWN	protein_coding	ARL8B	chromosome:C_jacchus3.2.1:15:1:98464013:1	56962362	57012205	D	ADP-ribosylation factor-like protein 8B {ECO:0000313|EMBL:JAB07944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010787}  [Source:UniProtKB/TrEMBL;Acc:F7I8E9]
ENSCJAG00000005585	KNOWN_BY_PROJECTION	protein_coding	NAV1	chromosome:C_jacchus3.2.1:19:1:49578535:1	23331860	23443881	D	neuron navigator 1 [Source:HGNC Symbol;Acc:HGNC:15989]
ENSCJAG00000004025	KNOWN_BY_PROJECTION	protein_coding	APEH	chromosome:C_jacchus3.2.1:15:1:98464013:1	25390486	25399830	D	acylaminoacyl-peptide hydrolase [Source:HGNC Symbol;Acc:HGNC:586]
ENSCJAG00000009239	KNOWN	protein_coding	UNC13B	chromosome:C_jacchus3.2.1:1:1:210400635:1	136882904	137115616	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017195}  [Source:UniProtKB/TrEMBL;Acc:F7I7V5]
ENSCJAG00000017744	NOVEL	protein_coding	ENSCJAG00000017744	chromosome:C_jacchus3.2.1:14:1:108792865:1	32493098	32493884	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032725}  [Source:UniProtKB/TrEMBL;Acc:F7H0Y2]
ENSCJAG00000005578	NOVEL	pseudogene	ENSCJAG00000005578	chromosome:C_jacchus3.2.1:19:1:49578535:1	23123020	23124353	R	<no descrition>
ENSCJAG00000001175	KNOWN_BY_PROJECTION	protein_coding	COMP	chromosome:C_jacchus3.2.1:5:1:159171411:1	64231894	64240808	R	cartilage oligomeric matrix protein [Source:HGNC Symbol;Acc:HGNC:2227]
ENSCJAG00000004799	KNOWN	protein_coding	SEC31A	chromosome:C_jacchus3.2.1:3:1:190850796:1	111338270	111418609	D	Protein transport protein Sec31A isoform 2 {ECO:0000313|EMBL:JAB15261.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009142}  [Source:UniProtKB/TrEMBL;Acc:F7ISG9]
ENSCJAG00000021684	KNOWN	protein_coding	PHF1	chromosome:C_jacchus3.2.1:4:1:171630274:1	34218919	34224384	D	PHD finger protein 1 isoform b {ECO:0000313|EMBL:JAB06873.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040388}  [Source:UniProtKB/TrEMBL;Acc:F7IR10]
ENSCJAG00000005557	KNOWN	protein_coding	CSRP1	chromosome:C_jacchus3.2.1:19:1:49578535:1	23099512	23125209	R	Cysteine and glycine-rich protein 1 isoform 1 {ECO:0000313|EMBL:JAB17573.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010178}  [Source:UniProtKB/TrEMBL;Acc:F6XNE4]
ENSCJAG00000004140	KNOWN	protein_coding	RNF123	chromosome:C_jacchus3.2.1:15:1:98464013:1	25384247	25580864	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047300}  [Source:UniProtKB/TrEMBL;Acc:F7I6D1]
ENSCJAG00000009210	KNOWN	protein_coding	FAM214B	chromosome:C_jacchus3.2.1:1:1:210400635:1	136830318	136842651	R	Protein FAM214B {ECO:0000313|EMBL:JAB32853.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016910}  [Source:UniProtKB/TrEMBL;Acc:F6UDZ8]
ENSCJAG00000021681	KNOWN_BY_PROJECTION	protein_coding	KIFC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	34200253	34217725	D	kinesin family member C1 [Source:HGNC Symbol;Acc:HGNC:6389]
ENSCJAG00000021676	KNOWN	protein_coding	ZBTB22	chromosome:C_jacchus3.2.1:4:1:171630274:1	34123133	34126765	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040363}; Zinc finger and BTB domain-containing protein 22 {ECO:0000313|EMBL:JAB05809.1}  [Source:UniProtKB/TrEMBL;Acc:F7HK97]
ENSCJAG00000021679	KNOWN_BY_PROJECTION	protein_coding	DAXX	chromosome:C_jacchus3.2.1:4:1:171630274:1	34127437	34129675	R	death-domain associated protein [Source:HGNC Symbol;Acc:HGNC:2681]
ENSCJAG00000001201	KNOWN	protein_coding	EPN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	64082904	64178429	R	Epsin-2 isoform a {ECO:0000313|EMBL:JAB09429.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002143}  [Source:UniProtKB/TrEMBL;Acc:F7IIZ5]
ENSCJAG00000017578	KNOWN	protein_coding	DCTN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	32453023	32483733	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032682}  [Source:UniProtKB/TrEMBL;Acc:F7HGS2]
ENSCJAG00000009263	KNOWN_BY_PROJECTION	protein_coding	OTOG	chromosome:C_jacchus3.2.1:11:1:130397257:1	81102976	81206493	D	otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
ENSCJAG00000005499	KNOWN_BY_PROJECTION	protein_coding	TNNI1	chromosome:C_jacchus3.2.1:19:1:49578535:1	23013967	23031083	R	troponin I type 1 (skeletal, slow) [Source:HGNC Symbol;Acc:HGNC:11945]
ENSCJAG00000037942	NOVEL	pseudogene	ENSCJAG00000037942	chromosome:C_jacchus3.2.1:11:1:130397257:1	81071995	81073570	R	<no descrition>
ENSCJAG00000004003	KNOWN_BY_PROJECTION	protein_coding	BSN	chromosome:C_jacchus3.2.1:15:1:98464013:1	25367164	25381416	D	bassoon presynaptic cytomatrix protein [Source:HGNC Symbol;Acc:HGNC:1117]
ENSCJAG00000009137	KNOWN	protein_coding	STOML2	chromosome:C_jacchus3.2.1:1:1:210400635:1	136825277	136829366	R	Stomatin-like protein 2 {ECO:0000313|EMBL:JAB15234.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016846}  [Source:UniProtKB/TrEMBL;Acc:F6XCA9]
ENSCJAG00000004019	NOVEL	protein_coding	ENSCJAG00000004019	chromosome:C_jacchus3.2.1:15:1:98464013:1	25285347	25286619	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052262}  [Source:UniProtKB/TrEMBL;Acc:F7IJ34]
ENSCJAG00000001232	NOVEL	protein_coding	ENSCJAG00000001232	chromosome:C_jacchus3.2.1:5:1:159171411:1	64056853	64075768	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002204}  [Source:UniProtKB/TrEMBL;Acc:F7HXS4]
ENSCJAG00000003999	KNOWN_BY_PROJECTION	protein_coding	DAG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	25208060	25255733	D	dystroglycan 1 (dystrophin-associated glycoprotein 1) [Source:HGNC Symbol;Acc:HGNC:2666]
ENSCJAG00000005062	NOVEL	protein_coding	ENSCJAG00000005062	chromosome:C_jacchus3.2.1:3:1:190850796:1	111335439	111336464	R	<no descrition>
ENSCJAG00000005095	KNOWN_BY_PROJECTION	protein_coding	THAP9	chromosome:C_jacchus3.2.1:3:1:190850796:1	111298529	111321219	R	THAP domain containing 9 [Source:HGNC Symbol;Acc:HGNC:23192]
ENSCJAG00000003992	KNOWN	protein_coding	NICN1	chromosome:C_jacchus3.2.1:15:1:98464013:1	25102833	25110690	R	Nicolin-1 {ECO:0000313|EMBL:JAB01767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007257}  [Source:UniProtKB/TrEMBL;Acc:F6U2J8]
ENSCJAG00000005479	KNOWN_BY_PROJECTION	protein_coding	LAD1	chromosome:C_jacchus3.2.1:19:1:49578535:1	22987630	23005578	R	ladinin 1 [Source:HGNC Symbol;Acc:HGNC:6472]
ENSCJAG00000003962	KNOWN	protein_coding	AMT	chromosome:C_jacchus3.2.1:15:1:98464013:1	25096596	25102550	R	Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}  [Source:UniProtKB/TrEMBL;Acc:F6PIE6]
ENSCJAG00000005110	KNOWN	protein_coding	LIN54	chromosome:C_jacchus3.2.1:3:1:190850796:1	111203485	111289944	D	Protein lin-54 homolog isoform a {ECO:0000313|EMBL:JAB03321.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009380}  [Source:UniProtKB/TrEMBL;Acc:F7H2K8]
ENSCJAG00000009310	KNOWN_BY_PROJECTION	protein_coding	USH1C	chromosome:C_jacchus3.2.1:11:1:130397257:1	81051237	81101699	R	Usher syndrome 1C (autosomal recessive, severe) [Source:HGNC Symbol;Acc:HGNC:12597]
ENSCJAG00000017577	KNOWN_BY_PROJECTION	protein_coding	C2orf81	chromosome:C_jacchus3.2.1:14:1:108792865:1	32433219	32436925	D	chromosome 2 open reading frame 81 [Source:HGNC Symbol;Acc:HGNC:34350]
ENSCJAG00000001277	KNOWN	protein_coding	MAPK7	chromosome:C_jacchus3.2.1:5:1:159171411:1	64033400	64039217	R	Mitogen-activated protein kinase {ECO:0000256|RuleBase:RU361165}  [Source:UniProtKB/TrEMBL;Acc:F7II28]
ENSCJAG00000017568	KNOWN	protein_coding	WDR54	chromosome:C_jacchus3.2.1:14:1:108792865:1	32423900	32426719	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032378}  [Source:UniProtKB/TrEMBL;Acc:F7FXG1]
ENSCJAG00000003957	KNOWN_BY_PROJECTION	protein_coding	TCTA	chromosome:C_jacchus3.2.1:15:1:98464013:1	25091963	25095939	D	T-cell leukemia translocation altered [Source:HGNC Symbol;Acc:HGNC:11692]
ENSCJAG00000031826	NOVEL	protein_coding	ENSCJAG00000031826	chromosome:C_jacchus3.2.1:15:1:98464013:1	25086165	25100927	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047226}  [Source:UniProtKB/TrEMBL;Acc:F7IIC5]
ENSCJAG00000036147	NOVEL	protein_coding	ENSCJAG00000036147	chromosome:C_jacchus3.2.1:15:1:98464013:1	25084677	25088379	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052386}  [Source:UniProtKB/TrEMBL;Acc:F7ILC5]
ENSCJAG00000005067	KNOWN_BY_PROJECTION	protein_coding	COPS4	chromosome:C_jacchus3.2.1:3:1:190850796:1	111126943	111177249	R	COP9 signalosome subunit 4 [Source:HGNC Symbol;Acc:HGNC:16702]
ENSCJAG00000005167	KNOWN_BY_PROJECTION	protein_coding	PLAC8	chromosome:C_jacchus3.2.1:3:1:190850796:1	111084712	111110670	D	placenta-specific 8 [Source:HGNC Symbol;Acc:HGNC:19254]
ENSCJAG00000005173	NOVEL	protein_coding	ENSCJAG00000005173	chromosome:C_jacchus3.2.1:3:1:190850796:1	111061995	111064802	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009433}  [Source:UniProtKB/TrEMBL;Acc:F7GC81]
ENSCJAG00000005174	NOVEL	pseudogene	ENSCJAG00000005174	chromosome:C_jacchus3.2.1:3:1:190850796:1	111059190	111059794	D	<no descrition>
ENSCJAG00000003904	KNOWN	protein_coding	RHOA	chromosome:C_jacchus3.2.1:15:1:98464013:1	25044034	25091850	R	Transforming protein RhoA {ECO:0000313|EMBL:JAB07026.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007164}  [Source:UniProtKB/TrEMBL;Acc:F6RB87]
ENSCJAG00000017531	KNOWN	protein_coding	RTKN	chromosome:C_jacchus3.2.1:14:1:108792865:1	32408252	32423739	D	Rhotekin isoform b {ECO:0000313|EMBL:JAB04329.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032361}  [Source:UniProtKB/TrEMBL;Acc:F7FY20]
ENSCJAG00000003896	NOVEL	protein_coding	ENSCJAG00000003896	chromosome:C_jacchus3.2.1:15:1:98464013:1	25041402	25043185	R	Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}  [Source:UniProtKB/TrEMBL;Acc:F6T6G6]
ENSCJAG00000001284	KNOWN_BY_PROJECTION	protein_coding	MFAP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	64028857	64032085	D	microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:HGNC:7035]
ENSCJAG00000018676	NOVEL	protein_coding	ENSCJAG00000018676	chromosome:C_jacchus3.2.1:15:1:98464013:1	25034907	25048878	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034687}  [Source:UniProtKB/TrEMBL;Acc:F7IMG7]
ENSCJAG00000008153	NOVEL	protein_coding	ENSCJAG00000008153	chromosome:C_jacchus3.2.1:15:1:98464013:1	25018596	25027542	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015045}  [Source:UniProtKB/TrEMBL;Acc:F7G6T4]
ENSCJAG00000035420	NOVEL	protein_coding	ENSCJAG00000035420	chromosome:C_jacchus3.2.1:15:1:98464013:1	25009266	25026105	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046661}  [Source:UniProtKB/TrEMBL;Acc:F7IMG4]
ENSCJAG00000009085	KNOWN	protein_coding	PIGO	chromosome:C_jacchus3.2.1:1:1:210400635:1	136810612	136818743	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016733}  [Source:UniProtKB/TrEMBL;Acc:F7B519]
ENSCJAG00000035214	NOVEL	protein_coding	ENSCJAG00000035214	chromosome:C_jacchus3.2.1:1:1:210400635:1	136796493	136799783	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047051}  [Source:UniProtKB/TrEMBL;Acc:F7I8X9]
ENSCJAG00000005458	KNOWN_BY_PROJECTION	protein_coding	TNNT2	chromosome:C_jacchus3.2.1:19:1:49578535:1	22963451	22982791	R	troponin T type 2 (cardiac) [Source:HGNC Symbol;Acc:HGNC:11949]
ENSCJAG00000009368	KNOWN_BY_PROJECTION	protein_coding	ABCC8	chromosome:C_jacchus3.2.1:11:1:130397257:1	80942174	81033031	R	ATP-binding cassette, sub-family C (CFTR/MRP), member 8 [Source:HGNC Symbol;Acc:HGNC:59]
ENSCJAG00000009059	KNOWN	protein_coding	FANCG	chromosome:C_jacchus3.2.1:1:1:210400635:1	136795408	136801474	R	Fanconi anemia group G protein {ECO:0000313|EMBL:JAB10078.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016616}  [Source:UniProtKB/TrEMBL;Acc:F6Y2J5]
ENSCJAG00000003788	KNOWN	protein_coding	USP4	chromosome:C_jacchus3.2.1:15:1:98464013:1	24960914	25020760	R	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F6TSE3]
ENSCJAG00000021960	KNOWN	protein_coding	KCNJ11	chromosome:C_jacchus3.2.1:11:1:130397257:1	80934323	80938078	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040639}  [Source:UniProtKB/TrEMBL;Acc:F7IBQ7]
ENSCJAG00000002197	KNOWN_BY_PROJECTION	protein_coding	DUOX1	chromosome:C_jacchus3.2.1:10:1:132174527:1	22113656	22148973	D	dual oxidase 1 [Source:HGNC Symbol;Acc:HGNC:3062]
ENSCJAG00000009421	KNOWN_BY_PROJECTION	protein_coding	NCR3LG1	chromosome:C_jacchus3.2.1:11:1:130397257:1	80905424	80971134	D	natural killer cell cytotoxicity receptor 3 ligand 1 [Source:HGNC Symbol;Acc:HGNC:42400]
ENSCJAG00000001515	NOVEL	protein_coding	ENSCJAG00000001515	chromosome:C_jacchus3.2.1:9:1:124281992:1	60029539	60151018	R	<no descrition>
ENSCJAG00000003785	KNOWN	protein_coding	C3ORF62	chromosome:C_jacchus3.2.1:15:1:98464013:1	24954065	24960284	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006846}; Uncharacterized protein C3orf62 {ECO:0000313|EMBL:JAB01924.1}  [Source:UniProtKB/TrEMBL;Acc:F7CY89]
ENSCJAG00000001293	KNOWN_BY_PROJECTION	protein_coding	RNF112	chromosome:C_jacchus3.2.1:5:1:159171411:1	63999018	64004762	R	ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
ENSCJAG00000009422	KNOWN	protein_coding	NUCB2	chromosome:C_jacchus3.2.1:11:1:130397257:1	80841256	80883936	D	Nucleobindin-2 {ECO:0000313|EMBL:JAB08703.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017335}  [Source:UniProtKB/TrEMBL;Acc:F7IH71]
ENSCJAG00000003765	KNOWN_BY_PROJECTION	protein_coding	CCDC36	chromosome:C_jacchus3.2.1:15:1:98464013:1	24883521	24943961	D	coiled-coil domain containing 36 [Source:HGNC Symbol;Acc:HGNC:27945]
ENSCJAG00000033196	NOVEL	protein_coding	ENSCJAG00000033196	chromosome:C_jacchus3.2.1:11:1:130397257:1	80746672	80747140	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050615}  [Source:UniProtKB/TrEMBL;Acc:F7H3D5]
ENSCJAG00000003745	KNOWN	protein_coding	KLHDC8B	chromosome:C_jacchus3.2.1:15:1:98464013:1	24861654	24866509	D	Kelch domain-containing protein 8B {ECO:0000313|EMBL:JAB02326.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006806}  [Source:UniProtKB/TrEMBL;Acc:F7DGT3]
ENSCJAG00000003741	KNOWN_BY_PROJECTION	protein_coding	CCDC71	chromosome:C_jacchus3.2.1:15:1:98464013:1	24852043	24853422	R	coiled-coil domain containing 71 [Source:HGNC Symbol;Acc:HGNC:25760]
ENSCJAG00000005433	KNOWN_BY_PROJECTION	protein_coding	PKP1	chromosome:C_jacchus3.2.1:19:1:49578535:1	22884451	22930448	D	plakophilin 1 [Source:HGNC Symbol;Acc:HGNC:9023]
ENSCJAG00000008995	KNOWN_BY_PROJECTION	protein_coding	VCP	chromosome:C_jacchus3.2.1:1:1:210400635:1	136777673	136794143	R	valosin containing protein [Source:HGNC Symbol;Acc:HGNC:12666]
ENSCJAG00000003674	KNOWN_BY_PROJECTION	protein_coding	LAMB2	chromosome:C_jacchus3.2.1:15:1:98464013:1	24814147	24824780	R	laminin, beta 2 (laminin S) [Source:HGNC Symbol;Acc:HGNC:6487]
ENSCJAG00000005404	KNOWN_BY_PROJECTION	protein_coding	IGFN1	chromosome:C_jacchus3.2.1:19:1:49578535:1	22812231	22848598	D	immunoglobulin-like and fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24607]
ENSCJAG00000008968	KNOWN	protein_coding	DNAJB5	chromosome:C_jacchus3.2.1:1:1:210400635:1	136721934	136731842	D	DnaJ homolog subfamily B member 5 isoform 1 {ECO:0000313|EMBL:JAB04718.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046808}  [Source:UniProtKB/TrEMBL;Acc:F7HMS0]
ENSCJAG00000008952	KNOWN_BY_PROJECTION	protein_coding	KIAA1045	chromosome:C_jacchus3.2.1:1:1:210400635:1	136689372	136709364	D	KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
ENSCJAG00000017525	KNOWN	protein_coding	INO80B	chromosome:C_jacchus3.2.1:14:1:108792865:1	32394457	32397276	R	INO80 complex subunit B {ECO:0000313|EMBL:JAB19406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032297}  [Source:UniProtKB/TrEMBL;Acc:F7D2N0]
ENSCJAG00000005368	KNOWN_BY_PROJECTION	protein_coding	TMEM9	chromosome:C_jacchus3.2.1:19:1:49578535:1	22754255	22788095	R	transmembrane protein 9 [Source:HGNC Symbol;Acc:HGNC:18823]
ENSCJAG00000005361	KNOWN_BY_PROJECTION	protein_coding	ASCL5	chromosome:C_jacchus3.2.1:19:1:49578535:1	22730880	22731866	R	achaete-scute family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:33169]
ENSCJAG00000008950	NOVEL	protein_coding	ENSCJAG00000008950	chromosome:C_jacchus3.2.1:1:1:210400635:1	136531511	136533192	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043534}  [Source:UniProtKB/TrEMBL;Acc:F7HLT0]
ENSCJAG00000008940	KNOWN	protein_coding	CCL21	chromosome:C_jacchus3.2.1:1:1:210400635:1	136482392	136483561	R	C-C motif chemokine 21 {ECO:0000313|EMBL:JAB05025.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016359}  [Source:UniProtKB/TrEMBL;Acc:F7B701]
ENSCJAG00000017511	KNOWN	protein_coding	WBP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	32390887	32393314	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032274}; WW domain-binding protein 1 {ECO:0000313|EMBL:JAB14776.1}  [Source:UniProtKB/TrEMBL;Acc:F7DKD9]
ENSCJAG00000008935	KNOWN	protein_coding	CCL19	chromosome:C_jacchus3.2.1:1:1:210400635:1	136461321	136462995	R	C-C motif chemokine {ECO:0000256|RuleBase:RU361150}  [Source:UniProtKB/TrEMBL;Acc:F7BQ31]
ENSCJAG00000008931	NOVEL	protein_coding	ENSCJAG00000008931	chromosome:C_jacchus3.2.1:1:1:210400635:1	136441992	136443862	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016328}  [Source:UniProtKB/TrEMBL;Acc:F7C5H4]
ENSCJAG00000008928	KNOWN_BY_PROJECTION	protein_coding	CCL27	chromosome:C_jacchus3.2.1:1:1:210400635:1	136439343	136440090	R	chemokine (C-C motif) ligand 27 [Source:HGNC Symbol;Acc:HGNC:10626]
ENSCJAG00000017489	KNOWN	protein_coding	MOGS	chromosome:C_jacchus3.2.1:14:1:108792865:1	32386989	32390717	D	Mannosyl-oligosaccharide glucosidase isoform 1 {ECO:0000313|EMBL:JAB05244.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032241}  [Source:UniProtKB/TrEMBL;Acc:F7E1L8]
ENSCJAG00000001307	KNOWN_BY_PROJECTION	protein_coding	SLC47A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	63844616	63887189	R	solute carrier family 47 (multidrug and toxin extrusion), member 1 [Source:HGNC Symbol;Acc:HGNC:25588]
ENSCJAG00000001563	KNOWN_BY_PROJECTION	protein_coding	KCNMB4	chromosome:C_jacchus3.2.1:9:1:124281992:1	59871004	59941647	D	potassium channel subfamily M regulatory beta subunit 4 [Source:HGNC Symbol;Acc:HGNC:6289]
ENSCJAG00000036604	NOVEL	pseudogene	ENSCJAG00000036604	chromosome:C_jacchus3.2.1:9:1:124281992:1	59855951	59856240	D	<no descrition>
ENSCJAG00000002289	KNOWN_BY_PROJECTION	protein_coding	DUOXA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	22098864	22112088	R	dual oxidase maturation factor 1 [Source:HGNC Symbol;Acc:HGNC:26507]
ENSCJAG00000005180	KNOWN_BY_PROJECTION	protein_coding	COQ2	chromosome:C_jacchus3.2.1:3:1:190850796:1	110882487	110909110	D	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase [Source:HGNC Symbol;Acc:HGNC:25223]
ENSCJAG00000003571	KNOWN_BY_PROJECTION	protein_coding	USP19	chromosome:C_jacchus3.2.1:15:1:98464013:1	24801173	24813862	R	ubiquitin specific peptidase 19 [Source:HGNC Symbol;Acc:HGNC:12617]
ENSCJAG00000002302	KNOWN_BY_PROJECTION	protein_coding	DUOXA2	chromosome:C_jacchus3.2.1:10:1:132174527:1	22095922	22099244	D	dual oxidase maturation factor 2 [Source:HGNC Symbol;Acc:HGNC:32698]
ENSCJAG00000009472	KNOWN	protein_coding	PIK3C2A	chromosome:C_jacchus3.2.1:11:1:130397257:1	80639181	80763591	R	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha {ECO:0000313|EMBL:JAB17270.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044052}  [Source:UniProtKB/TrEMBL;Acc:F7H7B9]
ENSCJAG00000017481	KNOWN_BY_PROJECTION	protein_coding	CCDC142	chromosome:C_jacchus3.2.1:14:1:108792865:1	32359679	32379515	D	coiled-coil domain containing 142 [Source:HGNC Symbol;Acc:HGNC:25889]
ENSCJAG00000001338	NOVEL	protein_coding	ENSCJAG00000001338	chromosome:C_jacchus3.2.1:5:1:159171411:1	63796018	63818565	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045098}  [Source:UniProtKB/TrEMBL;Acc:F6T7W6]
ENSCJAG00000008302	NOVEL	protein_coding	ENSCJAG00000008302	chromosome:C_jacchus3.2.1:5:1:159171411:1	63759929	63790155	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015314}  [Source:UniProtKB/TrEMBL;Acc:F7EMC6]
ENSCJAG00000031569	NOVEL	protein_coding	ENSCJAG00000031569	chromosome:C_jacchus3.2.1:5:1:159171411:1	63651421	63653569	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045622}  [Source:UniProtKB/TrEMBL;Acc:F6QQ71]
ENSCJAG00000008306	NOVEL	protein_coding	ENSCJAG00000008306	chromosome:C_jacchus3.2.1:5:1:159171411:1	63743662	63750621	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015321}  [Source:UniProtKB/TrEMBL;Acc:F7EA47]
ENSCJAG00000021675	KNOWN_BY_PROJECTION	protein_coding	TAPBP	chromosome:C_jacchus3.2.1:4:1:171630274:1	34111724	34123114	R	TAP binding protein (tapasin) [Source:HGNC Symbol;Acc:HGNC:11566]
ENSCJAG00000008569	NOVEL	pseudogene	ENSCJAG00000008569	chromosome:C_jacchus3.2.1:5:1:159171411:1	63649043	63649184	D	<no descrition>
ENSCJAG00000032375	KNOWN	protein_coding	ENSCJAG00000032375	chromosome:C_jacchus3.2.1:1:1:210400635:1	136437939	136439290	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016318}  [Source:UniProtKB/TrEMBL;Acc:F7C622]
ENSCJAG00000008905	KNOWN_BY_PROJECTION	protein_coding	IL11RA	chromosome:C_jacchus3.2.1:1:1:210400635:1	136432210	136437232	D	interleukin 11 receptor, alpha [Source:HGNC Symbol;Acc:HGNC:5967]
ENSCJAG00000005329	KNOWN_BY_PROJECTION	protein_coding	CACNA1S	chromosome:C_jacchus3.2.1:19:1:49578535:1	22645917	22727922	R	calcium channel, voltage-dependent, L type, alpha 1S subunit [Source:HGNC Symbol;Acc:HGNC:1397]
ENSCJAG00000016503	KNOWN	protein_coding	HK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	54747628	54834851	R	Hexokinase-1 isoform HKI {ECO:0000313|EMBL:JAB09879.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051274}  [Source:UniProtKB/TrEMBL;Acc:F6V0U1]
ENSCJAG00000009615	NOVEL	protein_coding	ENSCJAG00000009615	chromosome:C_jacchus3.2.1:11:1:130397257:1	80417848	80419292	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017618}  [Source:UniProtKB/TrEMBL;Acc:F7I0K9]
ENSCJAG00000009564	NOVEL	protein_coding	ENSCJAG00000009564	chromosome:C_jacchus3.2.1:11:1:130397257:1	80631036	80634566	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017549}  [Source:UniProtKB/TrEMBL;Acc:F7IH12]
ENSCJAG00000005270	KNOWN_BY_PROJECTION	protein_coding	KIF21B	chromosome:C_jacchus3.2.1:19:1:49578535:1	22573262	22608925	R	kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
ENSCJAG00000009589	KNOWN_BY_PROJECTION	protein_coding	PLEKHA7	chromosome:C_jacchus3.2.1:11:1:130397257:1	80344738	80600418	R	pleckstrin homology domain containing, family A member 7 [Source:HGNC Symbol;Acc:HGNC:27049]
ENSCJAG00000017453	KNOWN	protein_coding	TTC31	chromosome:C_jacchus3.2.1:14:1:108792865:1	32346510	32359444	R	Tetratricopeptide repeat protein 31 {ECO:0000313|EMBL:JAB07396.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032161}  [Source:UniProtKB/TrEMBL;Acc:F7GAM7]
ENSCJAG00000005256	KNOWN_BY_PROJECTION	protein_coding	C1orf106	chromosome:C_jacchus3.2.1:19:1:49578535:1	22487372	22512664	D	chromosome 1 open reading frame 106 [Source:HGNC Symbol;Acc:HGNC:25599]
ENSCJAG00000005252	NOVEL	pseudogene	ENSCJAG00000005252	chromosome:C_jacchus3.2.1:19:1:49578535:1	22464085	22465315	D	<no descrition>
ENSCJAG00000003457	KNOWN_BY_PROJECTION	protein_coding	QARS	chromosome:C_jacchus3.2.1:15:1:98464013:1	24786764	24797311	R	glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
ENSCJAG00000008848	KNOWN_BY_PROJECTION	protein_coding	GALT	chromosome:C_jacchus3.2.1:1:1:210400635:1	136423119	136427188	D	galactose-1-phosphate uridylyltransferase [Source:HGNC Symbol;Acc:HGNC:4135]
ENSCJAG00000016493	KNOWN_BY_PROJECTION	protein_coding	TACR2	chromosome:C_jacchus3.2.1:12:1:121768101:1	54731938	54745066	D	tachykinin receptor 2 [Source:HGNC Symbol;Acc:HGNC:11527]
ENSCJAG00000017451	KNOWN_BY_PROJECTION	protein_coding	LBX2	chromosome:C_jacchus3.2.1:14:1:108792865:1	32341230	32343427	D	ladybird homeobox 2 [Source:HGNC Symbol;Acc:HGNC:15525]
ENSCJAG00000017432	KNOWN	protein_coding	PCGF1	chromosome:C_jacchus3.2.1:14:1:108792865:1	32333587	32335878	D	Polycomb group RING finger protein 1 {ECO:0000313|EMBL:JAB01658.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032130}  [Source:UniProtKB/TrEMBL;Acc:F7GL18]
ENSCJAG00000017424	KNOWN_BY_PROJECTION	protein_coding	TLX2	chromosome:C_jacchus3.2.1:14:1:108792865:1	32323085	32326785	R	T-cell leukemia homeobox 2 [Source:HGNC Symbol;Acc:HGNC:5057]
ENSCJAG00000020615	NOVEL	protein_coding	ENSCJAG00000020615	chromosome:C_jacchus3.2.1:5:1:159171411:1	63534384	63551326	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038326}  [Source:UniProtKB/TrEMBL;Acc:F7I9H3]
ENSCJAG00000016486	KNOWN	protein_coding	TSPAN15	chromosome:C_jacchus3.2.1:12:1:121768101:1	54637309	54695407	R	Tetraspanin-15 {ECO:0000313|EMBL:JAB08817.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030343}  [Source:UniProtKB/TrEMBL;Acc:F6WVU3]
ENSCJAG00000009626	KNOWN	protein_coding	C11ORF58	chromosome:C_jacchus3.2.1:11:1:130397257:1	80299515	80316201	D	Small acidic protein {ECO:0000313|EMBL:JAB17446.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017657}  [Source:UniProtKB/TrEMBL;Acc:F7HVS5]
ENSCJAG00000017388	KNOWN_BY_PROJECTION	protein_coding	DQX1	chromosome:C_jacchus3.2.1:14:1:108792865:1	32312335	32321738	D	DEAQ box RNA-dependent ATPase 1 [Source:HGNC Symbol;Acc:HGNC:20410]
ENSCJAG00000035303	NOVEL	protein_coding	ENSCJAG00000035303	chromosome:C_jacchus3.2.1:11:1:130397257:1	80155296	80156242	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041993}  [Source:UniProtKB/TrEMBL;Acc:F7FSM5]
ENSCJAG00000016485	KNOWN_BY_PROJECTION	protein_coding	NEUROG3	chromosome:C_jacchus3.2.1:12:1:121768101:1	54571562	54572883	D	neurogenin 3 [Source:HGNC Symbol;Acc:HGNC:13806]
ENSCJAG00000016482	KNOWN	protein_coding	C10ORF35	chromosome:C_jacchus3.2.1:12:1:121768101:1	54518738	54521703	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030330}; Uncharacterized protein C10orf35 {ECO:0000313|EMBL:JAB01646.1}  [Source:UniProtKB/TrEMBL;Acc:F6XHS2]
ENSCJAG00000009643	KNOWN_BY_PROJECTION	protein_coding	SOX6	chromosome:C_jacchus3.2.1:11:1:130397257:1	79593242	80140074	R	SRY (sex determining region Y)-box 6 [Source:HGNC Symbol;Acc:HGNC:16421]
ENSCJAG00000003440	KNOWN_BY_PROJECTION	protein_coding	QRICH1	chromosome:C_jacchus3.2.1:15:1:98464013:1	24727380	24784915	R	glutamine-rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
ENSCJAG00000000805	NOVEL	protein_coding	ENSCJAG00000000805	chromosome:C_jacchus3.2.1:5:1:159171411:1	63460697	63501748	D	<no descrition>
ENSCJAG00000002307	KNOWN_BY_PROJECTION	protein_coding	DUOX2	chromosome:C_jacchus3.2.1:10:1:132174527:1	22075034	22094777	R	dual oxidase 2 [Source:HGNC Symbol;Acc:HGNC:13273]
ENSCJAG00000034774	NOVEL	protein_coding	ENSCJAG00000034774	chromosome:C_jacchus3.2.1:5:1:159171411:1	63433464	63436750	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049137}  [Source:UniProtKB/TrEMBL;Acc:F7B201]
ENSCJAG00000007149	NOVEL	protein_coding	ENSCJAG00000007149	chromosome:C_jacchus3.2.1:5:1:159171411:1	63366026	63409041	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013289}  [Source:UniProtKB/TrEMBL;Acc:F6WLL7]
ENSCJAG00000011787	KNOWN_BY_PROJECTION	protein_coding	SPNS3	chromosome:C_jacchus3.2.1:5:1:159171411:1	63285623	63353218	D	spinster homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:28433]
ENSCJAG00000008767	KNOWN	protein_coding	SIGMAR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	136412627	136415273	R	Sigma non-opioid intracellular receptor 1 isoform 1 {ECO:0000313|EMBL:JAB09170.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016201}  [Source:UniProtKB/TrEMBL;Acc:F6YPR0]
ENSCJAG00000008754	KNOWN_BY_PROJECTION	protein_coding	ARID3C	chromosome:C_jacchus3.2.1:1:1:210400635:1	136398946	136405294	R	AT rich interactive domain 3C (BRIGHT-like) [Source:HGNC Symbol;Acc:HGNC:21209]
ENSCJAG00000011764	KNOWN	protein_coding	UBE2G1	chromosome:C_jacchus3.2.1:5:1:159171411:1	63106485	63215209	R	Ubiquitin-conjugating enzyme E2 G1 {ECO:0000313|EMBL:JAB08623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021627}  [Source:UniProtKB/TrEMBL;Acc:F6RWZ1]
ENSCJAG00000002346	KNOWN	protein_coding	SORD	chromosome:C_jacchus3.2.1:10:1:132174527:1	22016561	22055485	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004251}  [Source:UniProtKB/TrEMBL;Acc:F6Y547]
ENSCJAG00000003400	KNOWN	protein_coding	IMPDH2	chromosome:C_jacchus3.2.1:15:1:98464013:1	24721757	24727116	R	Inosine-5'-monophosphate dehydrogenase {ECO:0000256|RuleBase:RU003928}  [Source:UniProtKB/TrEMBL;Acc:F7H194]
ENSCJAG00000001567	KNOWN	protein_coding	CNOT2	chromosome:C_jacchus3.2.1:9:1:124281992:1	59749644	59856241	D	CCR4-NOT transcription complex subunit 2 {ECO:0000313|EMBL:JAB04025.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046895}  [Source:UniProtKB/TrEMBL;Acc:F7IK01]
ENSCJAG00000002364	KNOWN_BY_PROJECTION	protein_coding	C15orf43	chromosome:C_jacchus3.2.1:10:1:132174527:1	21951173	21977473	D	chromosome 15 open reading frame 43 [Source:HGNC Symbol;Acc:HGNC:28520]
ENSCJAG00000003387	KNOWN	protein_coding	NDUFAF3	chromosome:C_jacchus3.2.1:15:1:98464013:1	24718711	24720915	D	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 isoform a {ECO:0000313|EMBL:JAB39455.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049556}  [Source:UniProtKB/TrEMBL;Acc:F6VFE1]
ENSCJAG00000009705	KNOWN_BY_PROJECTION	protein_coding	INSC	chromosome:C_jacchus3.2.1:11:1:130397257:1	78723621	78848973	D	inscuteable homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:33116]
ENSCJAG00000005196	KNOWN_BY_PROJECTION	protein_coding	CAMSAP2	chromosome:C_jacchus3.2.1:19:1:49578535:1	22340271	22452009	D	calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
ENSCJAG00000017289	KNOWN	protein_coding	AUP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	32308280	32311420	D	Ancient ubiquitous protein 1 {ECO:0000313|EMBL:JAB05672.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032012}  [Source:UniProtKB/TrEMBL;Acc:F7D4B8]
ENSCJAG00000008717	KNOWN	protein_coding	DCTN3	chromosome:C_jacchus3.2.1:1:1:210400635:1	136390015	136396933	R	Dynactin subunit 3 isoform 1 {ECO:0000313|EMBL:JAB11758.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016063}  [Source:UniProtKB/TrEMBL;Acc:F6WBC9]
ENSCJAG00000033642	NOVEL	protein_coding	ENSCJAG00000033642	chromosome:C_jacchus3.2.1:9:1:124281992:1	59676667	59677089	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044682}  [Source:UniProtKB/TrEMBL;Acc:F7HBM1]
ENSCJAG00000008716	KNOWN_BY_PROJECTION	protein_coding	RPP25L	chromosome:C_jacchus3.2.1:1:1:210400635:1	136386918	136388504	R	ribonuclease P/MRP 25kDa subunit-like [Source:HGNC Symbol;Acc:HGNC:19909]
ENSCJAG00000002369	KNOWN_BY_PROJECTION	protein_coding	TRIM69	chromosome:C_jacchus3.2.1:10:1:132174527:1	21912171	21934926	D	tripartite motif containing 69 [Source:HGNC Symbol;Acc:HGNC:17857]
ENSCJAG00000009749	KNOWN	protein_coding	CALCB	chromosome:C_jacchus3.2.1:11:1:130397257:1	78673367	78678585	D	Calcitonin gene-related peptide 2 {ECO:0000313|EMBL:JAB15668.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017872}  [Source:UniProtKB/TrEMBL;Acc:F7IR98]
ENSCJAG00000008660	KNOWN_BY_PROJECTION	protein_coding	CNTFR	chromosome:C_jacchus3.2.1:1:1:210400635:1	136321259	136353436	R	ciliary neurotrophic factor receptor [Source:HGNC Symbol;Acc:HGNC:2170]
ENSCJAG00000003370	KNOWN_BY_PROJECTION	protein_coding	DALRD3	chromosome:C_jacchus3.2.1:15:1:98464013:1	24712893	24718559	R	DALR anticodon binding domain containing 3 [Source:HGNC Symbol;Acc:HGNC:25536]
ENSCJAG00000008653	KNOWN	protein_coding	ENHO	chromosome:C_jacchus3.2.1:1:1:210400635:1	136294980	136296956	R	Adropin {ECO:0000313|EMBL:JAB34415.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015923}  [Source:UniProtKB/TrEMBL;Acc:F7E7P6]
ENSCJAG00000017255	KNOWN_BY_PROJECTION	protein_coding	LOXL3	chromosome:C_jacchus3.2.1:14:1:108792865:1	32286966	32303762	D	lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
ENSCJAG00000009757	KNOWN	protein_coding	CALCA	chromosome:C_jacchus3.2.1:11:1:130397257:1	78552116	78556375	R	Calcitonin gene-related peptide 2 {ECO:0000313|EMBL:JAB36807.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017902}  [Source:UniProtKB/TrEMBL;Acc:F7IEG3]
ENSCJAG00000017285	KNOWN_BY_PROJECTION	protein_coding	HTRA2	chromosome:C_jacchus3.2.1:14:1:108792865:1	32305410	32308121	R	HtrA serine peptidase 2 [Source:HGNC Symbol;Acc:HGNC:14348]
ENSCJAG00000005183	KNOWN	protein_coding	DDX59	chromosome:C_jacchus3.2.1:19:1:49578535:1	22145398	22269320	R	Putative ATP-dependent RNA helicase DDX59 {ECO:0000313|EMBL:JAB06501.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009470}  [Source:UniProtKB/TrEMBL;Acc:F7F8D4]
ENSCJAG00000005738	KNOWN_BY_PROJECTION	protein_coding	DNAH8	chromosome:C_jacchus3.2.1:4:1:171630274:1	39705530	40054802	D	dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
ENSCJAG00000017296	NOVEL	pseudogene	ENSCJAG00000017296	chromosome:C_jacchus3.2.1:1:1:210400635:1	153002337	153004265	D	<no descrition>
ENSCJAG00000015832	KNOWN	protein_coding	BHLHE40	chromosome:C_jacchus3.2.1:15:1:98464013:1	56837806	56843537	D	Class E basic helix-loop-helix protein 40 {ECO:0000313|EMBL:JAB09921.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029172}  [Source:UniProtKB/TrEMBL;Acc:F7I5L6]
ENSCJAG00000015825	NOVEL	protein_coding	ENSCJAG00000015825	chromosome:C_jacchus3.2.1:15:1:98464013:1	56603639	56604851	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029143}  [Source:UniProtKB/TrEMBL;Acc:F7IAC6]
ENSCJAG00000002890	KNOWN_BY_PROJECTION	protein_coding	PLXNC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	84120904	84283352	D	plexin C1 [Source:HGNC Symbol;Acc:HGNC:9106]
ENSCJAG00000010030	KNOWN_BY_PROJECTION	protein_coding	MTIF2	chromosome:C_jacchus3.2.1:14:1:108792865:1	52122686	52147324	D	mitochondrial translational initiation factor 2 [Source:HGNC Symbol;Acc:HGNC:7441]
ENSCJAG00000019965	KNOWN	protein_coding	ARFGAP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	110434075	110445969	R	ADP-ribosylation factor GTPase-activating protein 2 isoform 1 {ECO:0000313|EMBL:JAB20314.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037179}  [Source:UniProtKB/TrEMBL;Acc:F7AI94]
ENSCJAG00000003342	KNOWN	protein_coding	P4HTM	chromosome:C_jacchus3.2.1:15:1:98464013:1	24684695	24705130	D	Transmembrane prolyl 4-hydroxylase isoform a {ECO:0000313|EMBL:JAB29115.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051923}  [Source:UniProtKB/TrEMBL;Acc:F7AXK6]
ENSCJAG00000011716	KNOWN	protein_coding	CYB5D2	chromosome:C_jacchus3.2.1:5:1:159171411:1	62980212	63003689	D	Neuferricin isoform 1 {ECO:0000313|EMBL:JAB03139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021523}  [Source:UniProtKB/TrEMBL;Acc:F6PSI7]
ENSCJAG00000017238	KNOWN	protein_coding	DOK1	chromosome:C_jacchus3.2.1:14:1:108792865:1	32281991	32285441	R	Docking protein 1 isoform 1 {ECO:0000313|EMBL:JAB03329.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047865}  [Source:UniProtKB/TrEMBL;Acc:F7GS04]
ENSCJAG00000011723	KNOWN	protein_coding	ANKFY1	chromosome:C_jacchus3.2.1:5:1:159171411:1	63010679	63100931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021593}  [Source:UniProtKB/TrEMBL;Acc:F6STY9]
ENSCJAG00000009776	KNOWN	protein_coding	CYP2R1	chromosome:C_jacchus3.2.1:11:1:130397257:1	78446490	78457416	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017955}; Vitamin D 25-hydroxylase {ECO:0000313|EMBL:JAB04705.1}  [Source:UniProtKB/TrEMBL;Acc:F7I9Q1]
ENSCJAG00000003354	KNOWN	protein_coding	WDR6	chromosome:C_jacchus3.2.1:15:1:98464013:1	24705188	24713837	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006109}; WD repeat-containing protein 6 {ECO:0000313|EMBL:JAB29921.1}  [Source:UniProtKB/TrEMBL;Acc:F7F5V2]
ENSCJAG00000005194	KNOWN_BY_PROJECTION	protein_coding	HPSE	chromosome:C_jacchus3.2.1:3:1:190850796:1	110812977	110874872	D	heparanase [Source:HGNC Symbol;Acc:HGNC:5164]
ENSCJAG00000017228	KNOWN_BY_PROJECTION	protein_coding	M1AP	chromosome:C_jacchus3.2.1:14:1:108792865:1	32170848	32281610	D	meiosis 1 associated protein [Source:HGNC Symbol;Acc:HGNC:25183]
ENSCJAG00000009800	KNOWN_BY_PROJECTION	protein_coding	PDE3B	chromosome:C_jacchus3.2.1:11:1:130397257:1	78218820	78433549	D	phosphodiesterase 3B, cGMP-inhibited [Source:HGNC Symbol;Acc:HGNC:8779]
ENSCJAG00000016435	KNOWN_BY_PROJECTION	protein_coding	COL13A1	chromosome:C_jacchus3.2.1:12:1:121768101:1	54160058	54325384	R	collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
ENSCJAG00000003305	KNOWN	protein_coding	ARIH2	chromosome:C_jacchus3.2.1:15:1:98464013:1	24604931	24672370	D	E3 ubiquitin-protein ligase ARIH2 {ECO:0000313|EMBL:JAB04686.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044197}  [Source:UniProtKB/TrEMBL;Acc:F7FK44]
ENSCJAG00000005092	KNOWN_BY_PROJECTION	protein_coding	AHCY	chromosome:C_jacchus3.2.1:19:1:49578535:1	21839731	21840978	R	adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
ENSCJAG00000005104	KNOWN	protein_coding	ZNF281	chromosome:C_jacchus3.2.1:19:1:49578535:1	21980103	21983910	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009324}; Zinc finger protein 281 {ECO:0000313|EMBL:JAB06671.1}  [Source:UniProtKB/TrEMBL;Acc:F7D5Y1]
ENSCJAG00000005114	KNOWN_BY_PROJECTION	protein_coding	KIF14	chromosome:C_jacchus3.2.1:19:1:49578535:1	22127071	22205425	R	kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]
ENSCJAG00000005047	NOVEL	protein_coding	ENSCJAG00000005047	chromosome:C_jacchus3.2.1:19:1:49578535:1	21033838	21035461	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009194}  [Source:UniProtKB/TrEMBL;Acc:F7II47]
ENSCJAG00000037154	NOVEL	protein_coding	ENSCJAG00000037154	chromosome:C_jacchus3.2.1:9:1:124281992:1	59491713	59517845	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002913}  [Source:UniProtKB/TrEMBL;Acc:F7HXC5]
ENSCJAG00000021668	KNOWN	protein_coding	RGL2	chromosome:C_jacchus3.2.1:4:1:171630274:1	34099084	34106795	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040340}  [Source:UniProtKB/TrEMBL;Acc:F7HR22]
ENSCJAG00000008574	KNOWN	protein_coding	DNAI1	chromosome:C_jacchus3.2.1:1:1:210400635:1	136234269	136294918	D	Dynein intermediate chain 1, axonemal {ECO:0000313|EMBL:JAB19964.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015910}  [Source:UniProtKB/TrEMBL;Acc:F7EJS1]
ENSCJAG00000005055	KNOWN_BY_PROJECTION	protein_coding	NR5A2	chromosome:C_jacchus3.2.1:19:1:49578535:1	21592416	21745187	D	nuclear receptor subfamily 5, group A, member 2 [Source:HGNC Symbol;Acc:HGNC:7984]
ENSCJAG00000036263	NOVEL	protein_coding	ENSCJAG00000036263	chromosome:C_jacchus3.2.1:9:1:124281992:1	59379478	59492551	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002895}  [Source:UniProtKB/TrEMBL;Acc:F7I4C9]
ENSCJAG00000003285	KNOWN	protein_coding	SLC25A20	chromosome:C_jacchus3.2.1:15:1:98464013:1	24541188	24586864	R	Mitochondrial carnitine/acylcarnitine carrier protein {ECO:0000313|EMBL:JAB10093.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051107}  [Source:UniProtKB/TrEMBL;Acc:F6ZL48]
ENSCJAG00000003255	KNOWN	protein_coding	PRKAR2A	chromosome:C_jacchus3.2.1:15:1:98464013:1	24429318	24527648	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005957}; cAMP-dependent protein kinase type II-alpha regulatory subunit {ECO:0000313|EMBL:JAB08691.1}  [Source:UniProtKB/TrEMBL;Acc:F7IC18]
ENSCJAG00000005247	KNOWN	protein_coding	HELQ	chromosome:C_jacchus3.2.1:3:1:190850796:1	110691432	110741947	D	Helicase POLQ-like {ECO:0000313|EMBL:JAB16297.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009660}  [Source:UniProtKB/TrEMBL;Acc:F7FKP0]
ENSCJAG00000011686	KNOWN_BY_PROJECTION	protein_coding	ZZEF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	62842254	62979494	R	zinc finger, ZZ-type with EF-hand domain 1 [Source:HGNC Symbol;Acc:HGNC:29027]
ENSCJAG00000008563	KNOWN_BY_PROJECTION	protein_coding	FAM219A	chromosome:C_jacchus3.2.1:1:1:210400635:1	136172800	136178742	R	family with sequence similarity 219, member A [Source:HGNC Symbol;Acc:HGNC:19920]
ENSCJAG00000002377	KNOWN	protein_coding	TXN	chromosome:C_jacchus3.2.1:10:1:132174527:1	21889076	21895848	D	Beta-2-microglobulin  [Source:UniProtKB/Swiss-Prot;Acc:P63061]
ENSCJAG00000005286	KNOWN	protein_coding	MRPS18C	chromosome:C_jacchus3.2.1:3:1:190850796:1	110684962	110691340	R	28S ribosomal protein S18c, mitochondrial {ECO:0000313|EMBL:JAB11008.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009671}  [Source:UniProtKB/TrEMBL;Acc:F7F752]
ENSCJAG00000021665	KNOWN	protein_coding	PFDN6	chromosome:C_jacchus3.2.1:4:1:171630274:1	34097363	34098425	D	Prefoldin subunit 6 {ECO:0000313|EMBL:JAB03240.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040327}  [Source:UniProtKB/TrEMBL;Acc:F7HXU8]
ENSCJAG00000003247	KNOWN_BY_PROJECTION	protein_coding	IP6K2	chromosome:C_jacchus3.2.1:15:1:98464013:1	24377192	24383721	R	inositol hexakisphosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:17313]
ENSCJAG00000034280	NOVEL	pseudogene	ENSCJAG00000034280	chromosome:C_jacchus3.2.1:19:1:49578535:1	20448287	20448741	D	<no descrition>
ENSCJAG00000005046	NOVEL	pseudogene	ENSCJAG00000005046	chromosome:C_jacchus3.2.1:19:1:49578535:1	20323356	20324359	R	<no descrition>
ENSCJAG00000016412	KNOWN_BY_PROJECTION	protein_coding	H2AFY2	chromosome:C_jacchus3.2.1:12:1:121768101:1	54004798	54064395	R	H2A histone family, member Y2 [Source:HGNC Symbol;Acc:HGNC:14453]
ENSCJAG00000003195	KNOWN	protein_coding	NCKIPSD	chromosome:C_jacchus3.2.1:15:1:98464013:1	24354501	24375044	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005907}  [Source:UniProtKB/TrEMBL;Acc:F7IGS1]
ENSCJAG00000011617	KNOWN_BY_PROJECTION	protein_coding	ATP2A3	chromosome:C_jacchus3.2.1:5:1:159171411:1	62759500	62796058	R	ATPase, Ca++ transporting, ubiquitous [Source:HGNC Symbol;Acc:HGNC:813]
ENSCJAG00000017198	KNOWN	protein_coding	SEMA4F	chromosome:C_jacchus3.2.1:14:1:108792865:1	32136492	32165213	R	Semaphorin-4F isoform 2 {ECO:0000313|EMBL:JAB46132.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031671}  [Source:UniProtKB/TrEMBL;Acc:F7I7T5]
ENSCJAG00000005294	KNOWN	protein_coding	FAM175A	chromosome:C_jacchus3.2.1:3:1:190850796:1	110660099	110684865	D	BRCA1-A complex subunit Abraxas {ECO:0000313|EMBL:JAB06300.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009708}  [Source:UniProtKB/TrEMBL;Acc:F7H1Z9]
ENSCJAG00000009850	KNOWN	protein_coding	PSMA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	78073965	78218669	R	Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}  [Source:UniProtKB/TrEMBL;Acc:F7GW13]
ENSCJAG00000001641	KNOWN_BY_PROJECTION	protein_coding	RAB3IP	chromosome:C_jacchus3.2.1:9:1:124281992:1	59293346	59370173	D	RAB3A interacting protein [Source:HGNC Symbol;Acc:HGNC:16508]
ENSCJAG00000003177	KNOWN_BY_PROJECTION	protein_coding	CELSR3	chromosome:C_jacchus3.2.1:15:1:98464013:1	24328096	24352694	R	cadherin, EGF LAG seven-pass G-type receptor 3 [Source:HGNC Symbol;Acc:HGNC:3230]
ENSCJAG00000002379	NOVEL	protein_coding	ENSCJAG00000002379	chromosome:C_jacchus3.2.1:10:1:132174527:1	21841165	21853028	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004295}  [Source:UniProtKB/TrEMBL;Acc:F6W9N8]
ENSCJAG00000004982	KNOWN_BY_PROJECTION	protein_coding	PTPRC	chromosome:C_jacchus3.2.1:19:1:49578535:1	20115260	20235851	D	protein tyrosine phosphatase, receptor type, C [Source:HGNC Symbol;Acc:HGNC:9666]
ENSCJAG00000016386	KNOWN	protein_coding	AIFM2	chromosome:C_jacchus3.2.1:12:1:121768101:1	53983630	54003085	D	Apoptosis-inducing factor 2 {ECO:0000313|EMBL:JAB01633.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030189}  [Source:UniProtKB/TrEMBL;Acc:F6V805]
ENSCJAG00000016374	KNOWN_BY_PROJECTION	protein_coding	TYSND1	chromosome:C_jacchus3.2.1:12:1:121768101:1	53969512	53977470	D	trypsin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28531]
ENSCJAG00000008549	KNOWN	protein_coding	C9ORF24	chromosome:C_jacchus3.2.1:1:1:210400635:1	136151613	136169657	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015765}  [Source:UniProtKB/TrEMBL;Acc:F7DSY3]
ENSCJAG00000017161	KNOWN	protein_coding	HK2	chromosome:C_jacchus3.2.1:14:1:108792865:1	31925054	31984081	R	Hexokinase-2 {ECO:0000313|EMBL:JAB07895.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031613}  [Source:UniProtKB/TrEMBL;Acc:F7IJI8]
ENSCJAG00000004969	KNOWN_BY_PROJECTION	protein_coding	ATP6V1G3	chromosome:C_jacchus3.2.1:19:1:49578535:1	19992117	20010919	R	ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 [Source:HGNC Symbol;Acc:HGNC:18265]
ENSCJAG00000001684	KNOWN	protein_coding	BEST3	chromosome:C_jacchus3.2.1:9:1:124281992:1	59193496	59238053	R	Bestrophin-3 isoform 1 {ECO:0000313|EMBL:JAB35237.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003058}  [Source:UniProtKB/TrEMBL;Acc:F7G7C9]
ENSCJAG00000017156	KNOWN_BY_PROJECTION	protein_coding	POLE4	chromosome:C_jacchus3.2.1:14:1:108792865:1	31858245	31866588	R	polymerase (DNA-directed), epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]
ENSCJAG00000008530	KNOWN_BY_PROJECTION	protein_coding	NUDT2	chromosome:C_jacchus3.2.1:1:1:210400635:1	136110612	136124399	D	nudix (nucleoside diphosphate linked moiety X)-type motif 2 [Source:HGNC Symbol;Acc:HGNC:8049]
ENSCJAG00000008519	KNOWN_BY_PROJECTION	protein_coding	KIF24	chromosome:C_jacchus3.2.1:1:1:210400635:1	136041127	136094084	R	kinesin family member 24 [Source:HGNC Symbol;Acc:HGNC:19916]
ENSCJAG00000008512	KNOWN	protein_coding	NCAN	chromosome:C_jacchus3.2.1:1:1:210400635:1	135978686	135990865	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015679}  [Source:UniProtKB/TrEMBL;Acc:F7GP38]
ENSCJAG00000011590	KNOWN_BY_PROJECTION	protein_coding	P2RX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	62728708	62749843	R	purinergic receptor P2X, ligand gated ion channel, 1 [Source:HGNC Symbol;Acc:HGNC:8533]
ENSCJAG00000017132	KNOWN	protein_coding	TACR1	chromosome:C_jacchus3.2.1:14:1:108792865:1	31656570	31797099	D	Substance-P receptor isoform long {ECO:0000313|EMBL:JAB19728.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031522}  [Source:UniProtKB/TrEMBL;Acc:F7HYI8]
ENSCJAG00000005314	KNOWN	protein_coding	AGPAT9	chromosome:C_jacchus3.2.1:3:1:190850796:1	110565958	110637848	R	Glycerol-3-phosphate acyltransferase 3 {ECO:0000313|EMBL:JAB03700.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007606}  [Source:UniProtKB/TrEMBL;Acc:F6PQR2]
ENSCJAG00000017127	NOVEL	protein_coding	ENSCJAG00000017127	chromosome:C_jacchus3.2.1:14:1:108792865:1	31409245	31410424	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031477}  [Source:UniProtKB/TrEMBL;Acc:F7I7Y9]
ENSCJAG00000017125	NOVEL	pseudogene	ENSCJAG00000017125	chromosome:C_jacchus3.2.1:14:1:108792865:1	31341355	31341795	D	<no descrition>
ENSCJAG00000004930	KNOWN	protein_coding	NEK7	chromosome:C_jacchus3.2.1:19:1:49578535:1	19614810	19768873	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009062}  [Source:UniProtKB/TrEMBL;Acc:F7I426]
ENSCJAG00000017116	KNOWN	protein_coding	MRPL19	chromosome:C_jacchus3.2.1:14:1:108792865:1	31178687	31187456	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031467}  [Source:UniProtKB/TrEMBL;Acc:F7IAA0]
ENSCJAG00000004916	KNOWN_BY_PROJECTION	protein_coding	LHX9	chromosome:C_jacchus3.2.1:19:1:49578535:1	19317680	19335377	D	LIM homeobox 9 [Source:HGNC Symbol;Acc:HGNC:14222]
ENSCJAG00000004910	KNOWN	protein_coding	C1ORF53	chromosome:C_jacchus3.2.1:19:1:49578535:1	19307130	19311940	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008966}; Uncharacterized protein C1orf53 {ECO:0000313|EMBL:JAB02545.1}  [Source:UniProtKB/TrEMBL;Acc:F7I5M0]
ENSCJAG00000003142	KNOWN_BY_PROJECTION	protein_coding	SLC26A6	chromosome:C_jacchus3.2.1:15:1:98464013:1	24315244	24324083	R	solute carrier family 26 (anion exchanger), member 6 [Source:HGNC Symbol;Acc:HGNC:14472]
ENSCJAG00000004896	NOVEL	pseudogene	ENSCJAG00000004896	chromosome:C_jacchus3.2.1:19:1:49578535:1	19124173	19124597	D	<no descrition>
ENSCJAG00000038149	KNOWN	protein_coding	COPB1	chromosome:C_jacchus3.2.1:11:1:130397257:1	78030407	78078213	R	Coatomer subunit beta {ECO:0000256|PIRNR:PIRNR005727}  [Source:UniProtKB/TrEMBL;Acc:F7GQX5]
ENSCJAG00000016353	KNOWN	protein_coding	SAR1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	53941562	53966415	D	GTP-binding protein SAR1a {ECO:0000313|EMBL:JAB03901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050969}  [Source:UniProtKB/TrEMBL;Acc:F6T0V7]
ENSCJAG00000011552	KNOWN	protein_coding	CAMKK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	62690890	62716766	R	Calcium/calmodulin-dependent protein kinase kinase 1 isoform a {ECO:0000313|EMBL:JAB10279.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021280}  [Source:UniProtKB/TrEMBL;Acc:F6QSP1]
ENSCJAG00000010046	NOVEL	protein_coding	ENSCJAG00000010046	chromosome:C_jacchus3.2.1:11:1:130397257:1	77986738	77988335	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018444}  [Source:UniProtKB/TrEMBL;Acc:F7GVR8]
ENSCJAG00000021659	KNOWN	protein_coding	WDR46	chromosome:C_jacchus3.2.1:4:1:171630274:1	34084458	34095938	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040323}  [Source:UniProtKB/TrEMBL;Acc:F7HXV3]
ENSCJAG00000005326	NOVEL	protein_coding	ENSCJAG00000005326	chromosome:C_jacchus3.2.1:3:1:190850796:1	110439144	110440314	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009741}  [Source:UniProtKB/TrEMBL;Acc:F7GWY3]
ENSCJAG00000010049	KNOWN_BY_PROJECTION	protein_coding	RRAS2	chromosome:C_jacchus3.2.1:11:1:130397257:1	77816584	77929755	R	related RAS viral (r-ras) oncogene homolog 2 [Source:HGNC Symbol;Acc:HGNC:17271]
ENSCJAG00000007176	KNOWN_BY_PROJECTION	protein_coding	ITGAE	chromosome:C_jacchus3.2.1:5:1:159171411:1	62583578	62594258	D	integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) [Source:HGNC Symbol;Acc:HGNC:6147]
ENSCJAG00000005335	KNOWN_BY_PROJECTION	protein_coding	NKX6-1	chromosome:C_jacchus3.2.1:3:1:190850796:1	109589761	109594668	D	NK6 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7839]
ENSCJAG00000007148	NOVEL	protein_coding	ENSCJAG00000007148	chromosome:C_jacchus3.2.1:5:1:159171411:1	62534140	62549728	R	P2X purinoceptor {ECO:0000256|RuleBase:RU000681}  [Source:UniProtKB/TrEMBL;Acc:F7CER1]
ENSCJAG00000021735	KNOWN	protein_coding	B3GALT4	chromosome:C_jacchus3.2.1:4:1:171630274:1	34082755	34083906	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040447}  [Source:UniProtKB/TrEMBL;Acc:F7I9I3]
ENSCJAG00000004852	KNOWN_BY_PROJECTION	protein_coding	DENND1B	chromosome:C_jacchus3.2.1:19:1:49578535:1	18907022	19174269	R	DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
ENSCJAG00000021650	KNOWN_BY_PROJECTION	protein_coding	RPS18	chromosome:C_jacchus3.2.1:4:1:171630274:1	34076698	34081500	D	ribosomal protein S18 [Source:HGNC Symbol;Acc:HGNC:10401]
ENSCJAG00000017096	KNOWN_BY_PROJECTION	protein_coding	GCFC2	chromosome:C_jacchus3.2.1:14:1:108792865:1	31118145	31171517	D	GC-rich sequence DNA-binding factor 2 [Source:HGNC Symbol;Acc:HGNC:1317]
ENSCJAG00000008473	KNOWN	protein_coding	UBAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	135945415	136040972	D	Ubiquitin-associated protein 1 isoform 1 {ECO:0000313|EMBL:JAB15094.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015660}  [Source:UniProtKB/TrEMBL;Acc:F7GUA2]
ENSCJAG00000005597	NOVEL	protein_coding	ENSCJAG00000005597	chromosome:C_jacchus3.2.1:3:1:190850796:1	109216201	109217499	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046869}  [Source:UniProtKB/TrEMBL;Acc:F7IMB0]
ENSCJAG00000007138	KNOWN_BY_PROJECTION	protein_coding	TAX1BP3	chromosome:C_jacchus3.2.1:5:1:159171411:1	62519407	62521191	R	Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:30684]
ENSCJAG00000007143	KNOWN	protein_coding	EMC6	chromosome:C_jacchus3.2.1:5:1:159171411:1	62524172	62525048	D	ER membrane protein complex subunit 6 {ECO:0000313|EMBL:JAB03235.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013273}  [Source:UniProtKB/TrEMBL;Acc:F6X896]
ENSCJAG00000005336	KNOWN_BY_PROJECTION	protein_coding	CDS1	chromosome:C_jacchus3.2.1:3:1:190850796:1	109392387	109466273	R	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 [Source:HGNC Symbol;Acc:HGNC:1800]
ENSCJAG00000021936	KNOWN	protein_coding	LRRTM4	chromosome:C_jacchus3.2.1:14:1:108792865:1	29353059	29358753	D	Leucine-rich repeat transmembrane neuronal protein 4 isoform b {ECO:0000313|EMBL:JAB13638.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047554}  [Source:UniProtKB/TrEMBL;Acc:F7E483]
ENSCJAG00000016308	NOVEL	protein_coding	ENSCJAG00000016308	chromosome:C_jacchus3.2.1:12:1:121768101:1	53887726	53915131	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030067}  [Source:UniProtKB/TrEMBL;Acc:F6RT10]
ENSCJAG00000017093	NOVEL	protein_coding	ENSCJAG00000017093	chromosome:C_jacchus3.2.1:14:1:108792865:1	30521186	30521671	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031412}  [Source:UniProtKB/TrEMBL;Acc:F7IJN9]
ENSCJAG00000003139	KNOWN_BY_PROJECTION	protein_coding	TMEM89	chromosome:C_jacchus3.2.1:15:1:98464013:1	24308946	24310032	R	transmembrane protein 89 [Source:HGNC Symbol;Acc:HGNC:32372]
ENSCJAG00000033493	NOVEL	protein_coding	ENSCJAG00000033493	chromosome:C_jacchus3.2.1:14:1:108792865:1	30723471	30724766	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043470}  [Source:UniProtKB/TrEMBL;Acc:F7I5J3]
ENSCJAG00000034632	NOVEL	pseudogene	ENSCJAG00000034632	chromosome:C_jacchus3.2.1:14:1:108792865:1	28164433	28165543	D	<no descrition>
ENSCJAG00000008463	KNOWN	protein_coding	DCAF12	chromosome:C_jacchus3.2.1:1:1:210400635:1	135847196	135869840	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015582}  [Source:UniProtKB/TrEMBL;Acc:F7DCV9]
ENSCJAG00000016344	KNOWN_BY_PROJECTION	protein_coding	NPFFR1	chromosome:C_jacchus3.2.1:12:1:121768101:1	53852565	53866279	D	neuropeptide FF receptor 1 [Source:HGNC Symbol;Acc:HGNC:17425]
ENSCJAG00000017063	NOVEL	protein_coding	ENSCJAG00000017063	chromosome:C_jacchus3.2.1:14:1:108792865:1	27745373	27748163	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031407}  [Source:UniProtKB/TrEMBL;Acc:F7IJQ4]
ENSCJAG00000008456	NOVEL	pseudogene	ENSCJAG00000008456	chromosome:C_jacchus3.2.1:1:1:210400635:1	135837181	135837647	R	<no descrition>
ENSCJAG00000008454	NOVEL	pseudogene	ENSCJAG00000008454	chromosome:C_jacchus3.2.1:1:1:210400635:1	135717764	135718820	R	<no descrition>
ENSCJAG00000016341	KNOWN_BY_PROJECTION	protein_coding	LRRC20	chromosome:C_jacchus3.2.1:12:1:121768101:1	53774469	53816355	D	leucine rich repeat containing 20 [Source:HGNC Symbol;Acc:HGNC:23421]
ENSCJAG00000016301	KNOWN	protein_coding	EIF4EBP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	53695456	53718601	R	Eukaryotic translation initiation factor 4E-binding protein 2 {ECO:0000313|EMBL:JAB10145.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029998}  [Source:UniProtKB/TrEMBL;Acc:F7I0B2]
ENSCJAG00000016339	NOVEL	pseudogene	ENSCJAG00000016339	chromosome:C_jacchus3.2.1:12:1:121768101:1	53731822	53732173	D	<no descrition>
ENSCJAG00000007114	KNOWN	protein_coding	CTNS	chromosome:C_jacchus3.2.1:5:1:159171411:1	62494061	62516987	D	Cystinosin isoform 1 {ECO:0000313|EMBL:JAB37220.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013245}  [Source:UniProtKB/TrEMBL;Acc:F6YHX4]
ENSCJAG00000016288	KNOWN_BY_PROJECTION	protein_coding	NODAL	chromosome:C_jacchus3.2.1:12:1:121768101:1	53676191	53687659	D	nodal growth differentiation factor [Source:HGNC Symbol;Acc:HGNC:7865]
ENSCJAG00000032781	NOVEL	protein_coding	ENSCJAG00000032781	chromosome:C_jacchus3.2.1:5:1:159171411:1	62376879	62378631	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044668}  [Source:UniProtKB/TrEMBL;Acc:F7HGL9]
ENSCJAG00000017040	KNOWN_BY_PROJECTION	protein_coding	REG1B	chromosome:C_jacchus3.2.1:14:1:108792865:1	27685930	27688876	D	regenerating islet-derived 1 beta [Source:HGNC Symbol;Acc:HGNC:9952]
ENSCJAG00000032558	NOVEL	protein_coding	ENSCJAG00000032558	chromosome:C_jacchus3.2.1:14:1:108792865:1	27670750	27673299	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043201}  [Source:UniProtKB/TrEMBL;Acc:F7IF36]
ENSCJAG00000003132	KNOWN	protein_coding	UQCRC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	24290164	24299992	R	Cytochrome b-c1 complex subunit 1, mitochondrial {ECO:0000313|EMBL:JAB02880.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005709}  [Source:UniProtKB/TrEMBL;Acc:F7IEL0]
ENSCJAG00000010055	KNOWN	protein_coding	SPON1	chromosome:C_jacchus3.2.1:11:1:130397257:1	77509486	77980868	D	Spondin-1 {ECO:0000313|EMBL:JAB19476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018510}  [Source:UniProtKB/TrEMBL;Acc:F7F3R2]
ENSCJAG00000031563	NOVEL	protein_coding	ENSCJAG00000031563	chromosome:C_jacchus3.2.1:14:1:108792865:1	27650297	27653086	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044096}  [Source:UniProtKB/TrEMBL;Acc:F7H217]
ENSCJAG00000008217	NOVEL	protein_coding	ENSCJAG00000008217	chromosome:C_jacchus3.2.1:14:1:108792865:1	27636144	27638447	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015184}  [Source:UniProtKB/TrEMBL;Acc:F7HAH0]
ENSCJAG00000017023	NOVEL	protein_coding	ENSCJAG00000017023	chromosome:C_jacchus3.2.1:14:1:108792865:1	27627357	27627968	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031288}  [Source:UniProtKB/TrEMBL;Acc:F7IAD7]
ENSCJAG00000000818	NOVEL	protein_coding	ENSCJAG00000000818	chromosome:C_jacchus3.2.1:14:1:108792865:1	27564935	27568437	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044964}  [Source:UniProtKB/TrEMBL;Acc:F7FVP5]
ENSCJAG00000034858	NOVEL	protein_coding	ENSCJAG00000034858	chromosome:C_jacchus3.2.1:14:1:108792865:1	27612304	27614005	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049735}  [Source:UniProtKB/TrEMBL;Acc:F6URP6]
ENSCJAG00000007063	NOVEL	protein_coding	ENSCJAG00000007063	chromosome:C_jacchus3.2.1:5:1:159171411:1	62341989	62445445	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038260}  [Source:UniProtKB/TrEMBL;Acc:F7INK9]
ENSCJAG00000032531	NOVEL	protein_coding	ENSCJAG00000032531	chromosome:C_jacchus3.2.1:14:1:108792865:1	26821677	26890251	R	<no descrition>
ENSCJAG00000017015	NOVEL	protein_coding	ENSCJAG00000017015	chromosome:C_jacchus3.2.1:14:1:108792865:1	26064037	26331063	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031285}  [Source:UniProtKB/TrEMBL;Acc:F7IAE0]
ENSCJAG00000010077	KNOWN	protein_coding	FAR1	chromosome:C_jacchus3.2.1:11:1:130397257:1	77238805	77298359	D	Fatty acyl-CoA reductase 1 {ECO:0000313|EMBL:JAB09739.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018586}  [Source:UniProtKB/TrEMBL;Acc:F7CYP8]
ENSCJAG00000032845	NOVEL	protein_coding	ENSCJAG00000032845	chromosome:C_jacchus3.2.1:14:1:108792865:1	25901531	25929617	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048466}  [Source:UniProtKB/TrEMBL;Acc:F7HDI7]
ENSCJAG00000017011	NOVEL	pseudogene	ENSCJAG00000017011	chromosome:C_jacchus3.2.1:14:1:108792865:1	24671477	24672562	D	<no descrition>
ENSCJAG00000001715	KNOWN	protein_coding	CCT2	chromosome:C_jacchus3.2.1:9:1:124281992:1	59109057	59125257	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003170}  [Source:UniProtKB/TrEMBL;Acc:F7CWM9]
ENSCJAG00000007109	KNOWN	protein_coding	SHPK	chromosome:C_jacchus3.2.1:5:1:159171411:1	62305476	62493597	R	Sedoheptulokinase {ECO:0000313|EMBL:JAB13224.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013193}  [Source:UniProtKB/TrEMBL;Acc:F7BK56]
ENSCJAG00000017009	NOVEL	protein_coding	ENSCJAG00000017009	chromosome:C_jacchus3.2.1:14:1:108792865:1	24670021	24670897	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031269}  [Source:UniProtKB/TrEMBL;Acc:F7IAH1]
ENSCJAG00000017006	NOVEL	protein_coding	ENSCJAG00000017006	chromosome:C_jacchus3.2.1:14:1:108792865:1	23427696	23429483	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031268}  [Source:UniProtKB/TrEMBL;Acc:F7IAH2]
ENSCJAG00000010117	KNOWN_BY_PROJECTION	protein_coding	PTH	chromosome:C_jacchus3.2.1:11:1:130397257:1	77098326	77100941	R	parathyroid hormone [Source:HGNC Symbol;Acc:HGNC:9606]
ENSCJAG00000017000	NOVEL	protein_coding	ENSCJAG00000017000	chromosome:C_jacchus3.2.1:14:1:108792865:1	23184039	23185499	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031262}  [Source:UniProtKB/TrEMBL;Acc:F7IAH7]
ENSCJAG00000033422	NOVEL	protein_coding	ENSCJAG00000033422	chromosome:C_jacchus3.2.1:5:1:159171411:1	62304948	62323723	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050003}  [Source:UniProtKB/TrEMBL;Acc:F7FS90]
ENSCJAG00000002132	NOVEL	protein_coding	ENSCJAG00000002132	chromosome:C_jacchus3.2.1:5:1:159171411:1	62269642	62270569	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044030}  [Source:UniProtKB/TrEMBL;Acc:F7HCJ0]
ENSCJAG00000034931	KNOWN_BY_PROJECTION	protein_coding	CCDC144NL	chromosome:C_jacchus3.2.1:5:1:159171411:1	62197634	62222909	D	coiled-coil domain containing 144 family, N-terminal like [Source:HGNC Symbol;Acc:HGNC:33735]
ENSCJAG00000010121	KNOWN	protein_coding	BTBD10	chromosome:C_jacchus3.2.1:11:1:130397257:1	77006365	77082356	R	BTB/POZ domain-containing protein 10 {ECO:0000313|EMBL:JAB08346.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018684}  [Source:UniProtKB/TrEMBL;Acc:F7G7T7]
ENSCJAG00000016917	KNOWN_BY_PROJECTION	protein_coding	PALD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	53563308	53587650	R	phosphatase domain containing, paladin 1 [Source:HGNC Symbol;Acc:HGNC:23530]
ENSCJAG00000014858	KNOWN	protein_coding	PRF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	53530159	53535586	D	Callithrix jacchus perforin 1 (pore forming protein) (PRF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001257251]
ENSCJAG00000001774	KNOWN	protein_coding	FRS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	58981109	59101541	D	Fibroblast growth factor receptor substrate 2 {ECO:0000313|EMBL:JAB10055.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003180}  [Source:UniProtKB/TrEMBL;Acc:F7HFW8]
ENSCJAG00000001779	KNOWN	protein_coding	YEATS4	chromosome:C_jacchus3.2.1:9:1:124281992:1	58834321	58882066	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003190}; YEATS domain-containing protein 4 {ECO:0000313|EMBL:JAB11000.1}  [Source:UniProtKB/TrEMBL;Acc:F7HFQ0]
ENSCJAG00000021644	KNOWN	protein_coding	VPS52	chromosome:C_jacchus3.2.1:4:1:171630274:1	34055606	34076639	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040300}; Vacuolar protein sorting-associated protein 52 homolog {ECO:0000313|EMBL:JAB08913.1}  [Source:UniProtKB/TrEMBL;Acc:F7I096]
ENSCJAG00000004825	KNOWN_BY_PROJECTION	protein_coding	CRB1	chromosome:C_jacchus3.2.1:19:1:49578535:1	18648580	18876916	D	crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
ENSCJAG00000001788	KNOWN	protein_coding	LYZ	chromosome:C_jacchus3.2.1:9:1:124281992:1	58823136	58828531	D	Lysozyme C  [Source:UniProtKB/Swiss-Prot;Acc:P79158]
ENSCJAG00000002978	KNOWN_BY_PROJECTION	protein_coding	COL7A1	chromosome:C_jacchus3.2.1:15:1:98464013:1	24253006	24286446	R	collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
ENSCJAG00000014803	KNOWN_BY_PROJECTION	protein_coding	ADAMTS14	chromosome:C_jacchus3.2.1:12:1:121768101:1	53393441	53478359	R	ADAM metallopeptidase with thrombospondin type 1 motif, 14 [Source:HGNC Symbol;Acc:HGNC:14899]
ENSCJAG00000013236	NOVEL	pseudogene	ENSCJAG00000013236	chromosome:C_jacchus3.2.1:14:1:108792865:1	22705681	22706850	D	<no descrition>
ENSCJAG00000008324	KNOWN	protein_coding	UBAP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	135666940	135810901	R	Ubiquitin-associated protein 2 {ECO:0000313|EMBL:JAB17205.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015400}  [Source:UniProtKB/TrEMBL;Acc:F7GZX1]
ENSCJAG00000004794	KNOWN_BY_PROJECTION	protein_coding	ZBTB41	chromosome:C_jacchus3.2.1:19:1:49578535:1	18509325	18563585	R	zinc finger and BTB domain containing 41 [Source:HGNC Symbol;Acc:HGNC:24819]
ENSCJAG00000019805	KNOWN	protein_coding	SUCLG1	chromosome:C_jacchus3.2.1:14:1:108792865:1	22174237	22211580	D	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial {ECO:0000313|EMBL:JAB03597.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036845}  [Source:UniProtKB/TrEMBL;Acc:F6TA24]
ENSCJAG00000036810	NOVEL	protein_coding	ENSCJAG00000036810	chromosome:C_jacchus3.2.1:14:1:108792865:1	22046638	22126286	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048184}  [Source:UniProtKB/TrEMBL;Acc:F7GYH2]
ENSCJAG00000005382	KNOWN	protein_coding	WDFY3	chromosome:C_jacchus3.2.1:3:1:190850796:1	109094840	109369186	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010208}  [Source:UniProtKB/TrEMBL;Acc:F6VA43]
ENSCJAG00000002109	KNOWN	protein_coding	YWHAE	chromosome:C_jacchus3.2.1:5:1:159171411:1	62143422	62195434	D	14-3-3 protein epsilon {ECO:0000313|EMBL:JAB06506.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003829}  [Source:UniProtKB/TrEMBL;Acc:F7GZ27]
ENSCJAG00000005619	NOVEL	protein_coding	ENSCJAG00000005619	chromosome:C_jacchus3.2.1:3:1:190850796:1	108389628	108389981	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010257}  [Source:UniProtKB/TrEMBL;Acc:F6UMH4]
ENSCJAG00000002099	KNOWN	protein_coding	CRK	chromosome:C_jacchus3.2.1:5:1:159171411:1	62074653	62120818	D	Adapter molecule crk isoform a {ECO:0000313|EMBL:JAB06891.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003791}  [Source:UniProtKB/TrEMBL;Acc:F7DCK2]
ENSCJAG00000019738	KNOWN_BY_PROJECTION	protein_coding	TRABD2A	chromosome:C_jacchus3.2.1:14:1:108792865:1	21675614	21742159	D	TraB domain containing 2A [Source:HGNC Symbol;Acc:HGNC:27013]
ENSCJAG00000002921	KNOWN	protein_coding	PFKFB4	chromosome:C_jacchus3.2.1:15:1:98464013:1	24149105	24250167	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043810}  [Source:UniProtKB/TrEMBL;Acc:F7IH15]
ENSCJAG00000001798	KNOWN	protein_coding	CPSF6	chromosome:C_jacchus3.2.1:9:1:124281992:1	58706166	58740159	D	Cleavage and polyadenylation specificity factor subunit 6 {ECO:0000313|EMBL:JAB10612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003267}  [Source:UniProtKB/TrEMBL;Acc:F7GPK7]
ENSCJAG00000019742	KNOWN_BY_PROJECTION	protein_coding	DNAH6	chromosome:C_jacchus3.2.1:14:1:108792865:1	21744878	22117719	R	dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
ENSCJAG00000005713	KNOWN	protein_coding	GLO1	chromosome:C_jacchus3.2.1:4:1:171630274:1	39661339	39685824	R	Lactoylglutathione lyase {ECO:0000256|RuleBase:RU361179}  [Source:UniProtKB/TrEMBL;Acc:F7II04]
ENSCJAG00000005701	NOVEL	protein_coding	ENSCJAG00000005701	chromosome:C_jacchus3.2.1:4:1:171630274:1	39578396	39598677	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010470}  [Source:UniProtKB/TrEMBL;Acc:F7HNB4]
ENSCJAG00000022343	NOVEL	pseudogene	ENSCJAG00000022343	chromosome:C_jacchus3.2.1:4:1:171630274:1	39333538	39333981	D	<no descrition>
ENSCJAG00000002958	KNOWN	protein_coding	CRADD	chromosome:C_jacchus3.2.1:9:1:124281992:1	83654594	83952017	D	Death domain-containing protein CRADD {ECO:0000313|EMBL:JAB05623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005358}  [Source:UniProtKB/TrEMBL;Acc:F7IH85]
ENSCJAG00000033833	NOVEL	protein_coding	ENSCJAG00000033833	chromosome:C_jacchus3.2.1:4:1:171630274:1	39203086	39223142	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042190}  [Source:UniProtKB/TrEMBL;Acc:F6ULN5]
ENSCJAG00000005686	NOVEL	protein_coding	ENSCJAG00000005686	chromosome:C_jacchus3.2.1:4:1:171630274:1	38852457	38854000	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010428}  [Source:UniProtKB/TrEMBL;Acc:F7HWV4]
ENSCJAG00000019735	NOVEL	protein_coding	ENSCJAG00000019735	chromosome:C_jacchus3.2.1:14:1:108792865:1	21512337	21545929	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036665}  [Source:UniProtKB/TrEMBL;Acc:F6TB33]
ENSCJAG00000019734	NOVEL	protein_coding	ENSCJAG00000019734	chromosome:C_jacchus3.2.1:14:1:108792865:1	21494044	21494538	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036663}  [Source:UniProtKB/TrEMBL;Acc:F6TB62]
ENSCJAG00000008318	NOVEL	protein_coding	ENSCJAG00000008318	chromosome:C_jacchus3.2.1:1:1:210400635:1	135629778	135630651	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015340}  [Source:UniProtKB/TrEMBL;Acc:F7DVJ2]
ENSCJAG00000001849	NOVEL	protein_coding	ENSCJAG00000001849	chromosome:C_jacchus3.2.1:9:1:124281992:1	58393682	58395460	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049209}  [Source:UniProtKB/TrEMBL;Acc:F6X7X6]
ENSCJAG00000019729	NOVEL	protein_coding	ENSCJAG00000019729	chromosome:C_jacchus3.2.1:14:1:108792865:1	21276915	21277367	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036661}  [Source:UniProtKB/TrEMBL;Acc:F6TB97]
ENSCJAG00000019733	NOVEL	protein_coding	ENSCJAG00000019733	chromosome:C_jacchus3.2.1:14:1:108792865:1	21452934	21453939	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036662}  [Source:UniProtKB/TrEMBL;Acc:F6TB80]
ENSCJAG00000008305	KNOWN	protein_coding	UBE2R2	chromosome:C_jacchus3.2.1:1:1:210400635:1	135545217	135663357	D	Ubiquitin-conjugating enzyme E2 R2 {ECO:0000313|EMBL:JAB02819.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015330}  [Source:UniProtKB/TrEMBL;Acc:F7E9R9]
ENSCJAG00000008304	NOVEL	protein_coding	ENSCJAG00000008304	chromosome:C_jacchus3.2.1:1:1:210400635:1	135524787	135525842	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015313}  [Source:UniProtKB/TrEMBL;Acc:F7EMD2]
ENSCJAG00000019728	KNOWN_BY_PROJECTION	protein_coding	TGOLN2	chromosome:C_jacchus3.2.1:14:1:108792865:1	21245641	21251371	D	trans-golgi network protein 2 [Source:HGNC Symbol;Acc:HGNC:15450]
ENSCJAG00000002077	KNOWN_BY_PROJECTION	protein_coding	MYO1C	chromosome:C_jacchus3.2.1:5:1:159171411:1	62033745	62061881	D	myosin IC [Source:HGNC Symbol;Acc:HGNC:7597]
ENSCJAG00000014795	KNOWN_BY_PROJECTION	protein_coding	TBATA	chromosome:C_jacchus3.2.1:12:1:121768101:1	53357283	53371329	D	thymus, brain and testes associated [Source:HGNC Symbol;Acc:HGNC:23511]
ENSCJAG00000001853	NOVEL	protein_coding	ENSCJAG00000001853	chromosome:C_jacchus3.2.1:9:1:124281992:1	58314579	58316380	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003313}  [Source:UniProtKB/TrEMBL;Acc:F7EMX7]
ENSCJAG00000014793	NOVEL	protein_coding	ENSCJAG00000014793	chromosome:C_jacchus3.2.1:12:1:121768101:1	53351152	53351844	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027243}  [Source:UniProtKB/TrEMBL;Acc:F7G606]
ENSCJAG00000002060	KNOWN_BY_PROJECTION	protein_coding	INPP5K	chromosome:C_jacchus3.2.1:5:1:159171411:1	62007690	62031769	D	inositol polyphosphate-5-phosphatase K [Source:HGNC Symbol;Acc:HGNC:33882]
ENSCJAG00000010162	KNOWN_BY_PROJECTION	protein_coding	ARNTL	chromosome:C_jacchus3.2.1:11:1:130397257:1	76891717	77005614	D	aryl hydrocarbon receptor nuclear translocator-like [Source:HGNC Symbol;Acc:HGNC:701]
ENSCJAG00000002915	KNOWN	protein_coding	SHISA5	chromosome:C_jacchus3.2.1:15:1:98464013:1	24143917	24187262	R	Protein shisa-5 isoform d {ECO:0000313|EMBL:JAB05153.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046712}  [Source:UniProtKB/TrEMBL;Acc:F7I8F6]
ENSCJAG00000037061	KNOWN_BY_PROJECTION	protein_coding	TREX1	chromosome:C_jacchus3.2.1:15:1:98464013:1	24140043	24142568	D	three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]
ENSCJAG00000005600	KNOWN	protein_coding	ARHGAP24	chromosome:C_jacchus3.2.1:3:1:190850796:1	108089146	108606379	R	Rho GTPase-activating protein 24 isoform 2 {ECO:0000313|EMBL:JAB14044.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010241}  [Source:UniProtKB/TrEMBL;Acc:F6UNG7]
ENSCJAG00000031714	NOVEL	protein_coding	ENSCJAG00000031714	chromosome:C_jacchus3.2.1:3:1:190850796:1	108083439	108083887	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043191}  [Source:UniProtKB/TrEMBL;Acc:F7IJU1]
ENSCJAG00000010375	NOVEL	pseudogene	ENSCJAG00000010375	chromosome:C_jacchus3.2.1:3:1:190850796:1	108051947	108053349	D	<no descrition>
ENSCJAG00000010256	KNOWN_BY_PROJECTION	protein_coding	RASSF10	chromosome:C_jacchus3.2.1:11:1:130397257:1	76606117	76607670	D	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 [Source:HGNC Symbol;Acc:HGNC:33984]
ENSCJAG00000001828	KNOWN_BY_PROJECTION	protein_coding	CPM	chromosome:C_jacchus3.2.1:9:1:124281992:1	58270380	58384269	R	carboxypeptidase M [Source:HGNC Symbol;Acc:HGNC:2311]
ENSCJAG00000010263	KNOWN_BY_PROJECTION	protein_coding	TEAD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	76227711	76502505	D	TEA domain family member 1 (SV40 transcriptional enhancer factor) [Source:HGNC Symbol;Acc:HGNC:11714]
ENSCJAG00000002874	NOVEL	protein_coding	ENSCJAG00000002874	chromosome:C_jacchus3.2.1:15:1:98464013:1	24121209	24140637	D	<no descrition>
ENSCJAG00000010310	NOVEL	pseudogene	ENSCJAG00000010310	chromosome:C_jacchus3.2.1:11:1:130397257:1	76165272	76166575	D	<no descrition>
ENSCJAG00000007537	KNOWN_BY_PROJECTION	protein_coding	RMI2	chromosome:C_jacchus3.2.1:9:1:124281992:1	58178302	58185149	D	RecQ mediated genome instability 2 [Source:HGNC Symbol;Acc:HGNC:28349]
ENSCJAG00000014777	KNOWN	protein_coding	SGPL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	53269161	53328330	R	Sphingosine-1-phosphate lyase 1 {ECO:0000313|EMBL:JAB11701.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043759}  [Source:UniProtKB/TrEMBL;Acc:F7IRJ1]
ENSCJAG00000002382	KNOWN_BY_PROJECTION	protein_coding	SPG11	chromosome:C_jacchus3.2.1:10:1:132174527:1	21739916	21839220	R	spastic paraplegia 11 (autosomal recessive) [Source:HGNC Symbol;Acc:HGNC:11226]
ENSCJAG00000008222	KNOWN_BY_PROJECTION	protein_coding	NOL6	chromosome:C_jacchus3.2.1:1:1:210400635:1	135516221	135531951	R	nucleolar protein 6 (RNA-associated) [Source:HGNC Symbol;Acc:HGNC:19910]
ENSCJAG00000002871	KNOWN_BY_PROJECTION	protein_coding	TMA7	chromosome:C_jacchus3.2.1:15:1:98464013:1	24114583	24118456	D	translation machinery associated 7 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26932]
ENSCJAG00000002864	KNOWN	protein_coding	CCDC51	chromosome:C_jacchus3.2.1:15:1:98464013:1	24104376	24107413	R	Coiled-coil domain-containing protein 51 isoform 1 {ECO:0000313|EMBL:JAB07645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005207}  [Source:UniProtKB/TrEMBL;Acc:F7I362]
ENSCJAG00000007536	NOVEL	protein_coding	ENSCJAG00000007536	chromosome:C_jacchus3.2.1:9:1:124281992:1	58131413	58132332	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014006}  [Source:UniProtKB/TrEMBL;Acc:F7I4X0]
ENSCJAG00000014771	KNOWN	protein_coding	PCBD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	53257603	53263280	D	Pterin-4-alpha-carbinolamine dehydratase {ECO:0000313|EMBL:JAB10919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027201}  [Source:UniProtKB/TrEMBL;Acc:F7GPT5]
ENSCJAG00000014769	NOVEL	pseudogene	ENSCJAG00000014769	chromosome:C_jacchus3.2.1:12:1:121768101:1	53234915	53235867	D	<no descrition>
ENSCJAG00000010307	KNOWN_BY_PROJECTION	protein_coding	ANP32E	chromosome:C_jacchus3.2.1:11:1:130397257:1	76160822	76166908	D	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:HGNC Symbol;Acc:HGNC:16673]
ENSCJAG00000007027	KNOWN_BY_PROJECTION	protein_coding	UNC5B	chromosome:C_jacchus3.2.1:12:1:121768101:1	52854398	52875968	R	unc-5 homolog B (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12568]
ENSCJAG00000004680	KNOWN_BY_PROJECTION	protein_coding	ASPM	chromosome:C_jacchus3.2.1:19:1:49578535:1	18426126	18500374	R	asp (abnormal spindle) homolog, microcephaly associated (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19048]
ENSCJAG00000008188	KNOWN	protein_coding	AQP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	135495476	135502106	R	Aquaporin-3 {ECO:0000313|EMBL:JAB06425.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015149}  [Source:UniProtKB/TrEMBL;Acc:F7CWZ6]
ENSCJAG00000010314	KNOWN	protein_coding	PARVA	chromosome:C_jacchus3.2.1:11:1:130397257:1	75898155	76058097	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019069}  [Source:UniProtKB/TrEMBL;Acc:F6T6X4]
ENSCJAG00000008175	KNOWN	protein_coding	AQP7	chromosome:C_jacchus3.2.1:1:1:210400635:1	135433828	135451161	R	Aquaporin-7 {ECO:0000313|EMBL:JAB21444.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015117}  [Source:UniProtKB/TrEMBL;Acc:F7DW02]
ENSCJAG00000005621	KNOWN	protein_coding	MAPK10	chromosome:C_jacchus3.2.1:3:1:190850796:1	107736689	108076276	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010410}  [Source:UniProtKB/TrEMBL;Acc:F7HZ50]
ENSCJAG00000010364	KNOWN_BY_PROJECTION	protein_coding	MICALCL	chromosome:C_jacchus3.2.1:11:1:130397257:1	75802324	75885479	D	MICAL C-terminal like [Source:HGNC Symbol;Acc:HGNC:25933]
ENSCJAG00000004672	NOVEL	pseudogene	ENSCJAG00000004672	chromosome:C_jacchus3.2.1:19:1:49578535:1	18392089	18392949	D	<no descrition>
ENSCJAG00000002762	KNOWN	protein_coding	PLXNB1	chromosome:C_jacchus3.2.1:15:1:98464013:1	24071517	24094136	R	Plexin-B1 {ECO:0000313|EMBL:JAB10130.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005199}  [Source:UniProtKB/TrEMBL;Acc:F7IAA7]
ENSCJAG00000004670	NOVEL	protein_coding	ENSCJAG00000004670	chromosome:C_jacchus3.2.1:19:1:49578535:1	18388882	18389493	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008460}  [Source:UniProtKB/TrEMBL;Acc:F7IAR3]
ENSCJAG00000002031	KNOWN	protein_coding	SLC43A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	61896879	61951790	D	Large neutral amino acids transporter small subunit 4 {ECO:0000313|EMBL:JAB03227.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003678}  [Source:UniProtKB/TrEMBL;Acc:F7GZB3]
ENSCJAG00000008142	KNOWN_BY_PROJECTION	protein_coding	NFX1	chromosome:C_jacchus3.2.1:1:1:210400635:1	135330181	135419998	D	nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]
ENSCJAG00000004629	KNOWN	protein_coding	LBR	chromosome:C_jacchus3.2.1:19:1:49578535:1	18373703	18404351	D	Lamin-B receptor {ECO:0000313|EMBL:JAB05938.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008451}  [Source:UniProtKB/TrEMBL;Acc:F7ID02]
ENSCJAG00000031304	NOVEL	protein_coding	ENSCJAG00000031304	chromosome:C_jacchus3.2.1:3:1:190850796:1	107704349	107709153	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042018}  [Source:UniProtKB/TrEMBL;Acc:F6RU50]
ENSCJAG00000019726	KNOWN_BY_PROJECTION	protein_coding	RETSAT	chromosome:C_jacchus3.2.1:14:1:108792865:1	21223576	21237088	D	retinol saturase (all-trans-retinol 13,14-reductase) [Source:HGNC Symbol;Acc:HGNC:25991]
ENSCJAG00000008104	KNOWN	protein_coding	CHMP5	chromosome:C_jacchus3.2.1:1:1:210400635:1	135306409	135323326	D	Charged multivesicular body protein 5 isoform 1 {ECO:0000313|EMBL:JAB06881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015009}  [Source:UniProtKB/TrEMBL;Acc:F7GIF7]
ENSCJAG00000007048	KNOWN	protein_coding	SLC29A3	chromosome:C_jacchus3.2.1:12:1:121768101:1	52787239	52833748	R	Equilibrative nucleoside transporter 3 isoform a {ECO:0000313|EMBL:JAB38244.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013071}  [Source:UniProtKB/TrEMBL;Acc:F6ZJ21]
ENSCJAG00000012510	KNOWN	protein_coding	ENAH	chromosome:C_jacchus3.2.1:19:1:49578535:1	18112556	18274162	D	Protein enabled homolog isoform a {ECO:0000313|EMBL:JAB39406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022997}  [Source:UniProtKB/TrEMBL;Acc:F7I3J0]
ENSCJAG00000008074	KNOWN_BY_PROJECTION	protein_coding	BAG1	chromosome:C_jacchus3.2.1:1:1:210400635:1	135295833	135306264	R	BCL2-associated athanogene [Source:HGNC Symbol;Acc:HGNC:937]
ENSCJAG00000008067	KNOWN_BY_PROJECTION	protein_coding	SPINK4	chromosome:C_jacchus3.2.1:1:1:210400635:1	135281729	135289604	D	serine peptidase inhibitor, Kazal type 4 [Source:HGNC Symbol;Acc:HGNC:16646]
ENSCJAG00000021634	KNOWN	protein_coding	RING1	chromosome:C_jacchus3.2.1:4:1:171630274:1	34010457	34014673	D	E3 ubiquitin-protein ligase RING1 {ECO:0000313|EMBL:JAB06193.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040279}  [Source:UniProtKB/TrEMBL;Acc:F7IJ55]
ENSCJAG00000007201	KNOWN	protein_coding	C10ORF105	chromosome:C_jacchus3.2.1:12:1:121768101:1	52401024	52422303	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013378}  [Source:UniProtKB/TrEMBL;Acc:F7AGX8]
ENSCJAG00000002412	NOVEL	protein_coding	ENSCJAG00000002412	chromosome:C_jacchus3.2.1:10:1:132174527:1	21710927	21739332	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004399}  [Source:UniProtKB/TrEMBL;Acc:F7A6T5]
ENSCJAG00000012579	KNOWN	protein_coding	SRP9	chromosome:C_jacchus3.2.1:19:1:49578535:1	17989639	18001396	R	Signal recognition particle 9 kDa protein {ECO:0000256|PIRNR:PIRNR017029}  [Source:UniProtKB/TrEMBL;Acc:F7IIG1]
ENSCJAG00000022188	NOVEL	protein_coding	ENSCJAG00000022188	chromosome:C_jacchus3.2.1:10:1:132174527:1	21701636	21711601	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040844}  [Source:UniProtKB/TrEMBL;Acc:F7IDV9]
ENSCJAG00000002742	KNOWN_BY_PROJECTION	protein_coding	FBXW12	chromosome:C_jacchus3.2.1:15:1:98464013:1	24025473	24046046	D	F-box and WD repeat domain containing 12 [Source:HGNC Symbol;Acc:HGNC:20729]
ENSCJAG00000010368	KNOWN_BY_PROJECTION	protein_coding	MICAL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	75647599	75778451	D	microtubule associated monooxygenase, calponin and LIM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24693]
ENSCJAG00000002737	KNOWN_BY_PROJECTION	protein_coding	SPINK8	chromosome:C_jacchus3.2.1:15:1:98464013:1	23983593	24001568	R	serine peptidase inhibitor, Kazal type 8 (putative) [Source:HGNC Symbol;Acc:HGNC:33160]
ENSCJAG00000019718	KNOWN_BY_PROJECTION	protein_coding	ELMOD3	chromosome:C_jacchus3.2.1:14:1:108792865:1	21186357	21221186	R	ELMO/CED-12 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26158]
ENSCJAG00000002722	KNOWN_BY_PROJECTION	protein_coding	NME6	chromosome:C_jacchus3.2.1:15:1:98464013:1	23970941	23977461	R	NME/NM23 nucleoside diphosphate kinase 6 [Source:HGNC Symbol;Acc:HGNC:20567]
ENSCJAG00000007464	NOVEL	protein_coding	ENSCJAG00000007464	chromosome:C_jacchus3.2.1:9:1:124281992:1	58107093	58302226	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014002}  [Source:UniProtKB/TrEMBL;Acc:F7I4X6]
ENSCJAG00000002710	KNOWN	protein_coding	CAMP	chromosome:C_jacchus3.2.1:15:1:98464013:1	23923591	23926210	D	Cathelicidin antimicrobial peptide Antibacterial protein FALL-39 Antibacterial protein LL-37 [Source:UniProtKB/Swiss-Prot;Acc:Q1KLY4]
ENSCJAG00000002011	KNOWN_BY_PROJECTION	protein_coding	SCARF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	61877362	61892701	D	scavenger receptor class F, member 1 [Source:HGNC Symbol;Acc:HGNC:16820]
ENSCJAG00000008054	KNOWN	protein_coding	B4GALT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	135144709	135210519	R	Beta-1,4-galactosyltransferase 1 {ECO:0000313|EMBL:JAB03265.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045422}  [Source:UniProtKB/TrEMBL;Acc:F6R0W1]
ENSCJAG00000002673	KNOWN	protein_coding	CDC25A	chromosome:C_jacchus3.2.1:15:1:98464013:1	23873908	23903880	R	M-phase inducer phosphatase 1 isoform b {ECO:0000313|EMBL:JAB09702.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048743}  [Source:UniProtKB/TrEMBL;Acc:F6QK73]
ENSCJAG00000021632	KNOWN	protein_coding	HSD17B8	chromosome:C_jacchus3.2.1:4:1:171630274:1	34006618	34008795	D	Estradiol 17-beta-dehydrogenase 8  [Source:UniProtKB/Swiss-Prot;Acc:Q9GME3]
ENSCJAG00000002044	KNOWN_BY_PROJECTION	protein_coding	PITPNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	61874761	62005998	D	phosphatidylinositol transfer protein, alpha [Source:HGNC Symbol;Acc:HGNC:9001]
ENSCJAG00000007448	KNOWN	protein_coding	SLC35E3	chromosome:C_jacchus3.2.1:9:1:124281992:1	58047527	58066936	D	Solute carrier family 35 member E3 {ECO:0000313|EMBL:JAB08393.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013861}  [Source:UniProtKB/TrEMBL;Acc:F7AVQ7]
ENSCJAG00000007463	NOVEL	pseudogene	ENSCJAG00000007463	chromosome:C_jacchus3.2.1:9:1:124281992:1	58096230	58096620	R	<no descrition>
ENSCJAG00000002483	KNOWN_BY_PROJECTION	protein_coding	MAP4	chromosome:C_jacchus3.2.1:15:1:98464013:1	23584900	23818168	R	microtubule-associated protein 4 [Source:HGNC Symbol;Acc:HGNC:6862]
ENSCJAG00000019705	KNOWN	protein_coding	CAPG	chromosome:C_jacchus3.2.1:14:1:108792865:1	21165923	21183110	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036637}  [Source:UniProtKB/TrEMBL;Acc:F6TY85]
ENSCJAG00000007054	NOVEL	protein_coding	ENSCJAG00000007054	chromosome:C_jacchus3.2.1:12:1:121768101:1	52396831	52755026	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013358}  [Source:UniProtKB/TrEMBL;Acc:F7BI73]
ENSCJAG00000010506	KNOWN_BY_PROJECTION	protein_coding	DKK3	chromosome:C_jacchus3.2.1:11:1:130397257:1	75456199	75505837	R	dickkopf WNT signaling pathway inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:2893]
ENSCJAG00000019695	KNOWN_BY_PROJECTION	protein_coding	SH2D6	chromosome:C_jacchus3.2.1:14:1:108792865:1	21129052	21134336	R	SH2 domain containing 6 [Source:HGNC Symbol;Acc:HGNC:30439]
ENSCJAG00000012582	KNOWN	protein_coding	EPHX1	chromosome:C_jacchus3.2.1:19:1:49578535:1	17929364	17967117	R	Epoxide hydrolase 1 {ECO:0000313|EMBL:JAB11854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023060}  [Source:UniProtKB/TrEMBL;Acc:F7IDL6]
ENSCJAG00000002635	KNOWN	protein_coding	DHX30	chromosome:C_jacchus3.2.1:15:1:98464013:1	23548291	23581633	D	Putative ATP-dependent RNA helicase DHX30 isoform 2 {ECO:0000313|EMBL:JAB06479.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004847}  [Source:UniProtKB/TrEMBL;Acc:F6Y0X4]
ENSCJAG00000007443	NOVEL	protein_coding	ENSCJAG00000007443	chromosome:C_jacchus3.2.1:9:1:124281992:1	58005412	58007019	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052192}  [Source:UniProtKB/TrEMBL;Acc:F7HVR0]
ENSCJAG00000002423	KNOWN	protein_coding	CTDSPL2	chromosome:C_jacchus3.2.1:10:1:132174527:1	21587389	21696613	D	CTD small phosphatase-like protein 2 {ECO:0000313|EMBL:JAB03338.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004434}  [Source:UniProtKB/TrEMBL;Acc:F6YN76]
ENSCJAG00000001911	KNOWN	protein_coding	PRPF8	chromosome:C_jacchus3.2.1:5:1:159171411:1	61841304	62032600	D	Pre-mRNA-processing-splicing factor 8 {ECO:0000313|EMBL:JAB06711.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003619}  [Source:UniProtKB/TrEMBL;Acc:F7H9Y0]
ENSCJAG00000007203	KNOWN	protein_coding	C10ORF54	chromosome:C_jacchus3.2.1:12:1:121768101:1	52363321	52387533	D	Platelet receptor Gi24 {ECO:0000313|EMBL:JAB02105.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013398}  [Source:UniProtKB/TrEMBL;Acc:F6ZH93]
ENSCJAG00000034339	KNOWN_BY_PROJECTION	protein_coding	CDH23	chromosome:C_jacchus3.2.1:12:1:121768101:1	52318568	52337592	R	cadherin-related 23 [Source:HGNC Symbol;Acc:HGNC:13733]
ENSCJAG00000002463	NOVEL	protein_coding	ENSCJAG00000002463	chromosome:C_jacchus3.2.1:10:1:132174527:1	21561141	21561793	R	40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671}  [Source:UniProtKB/TrEMBL;Acc:F6W822]
ENSCJAG00000007863	KNOWN	protein_coding	SMU1	chromosome:C_jacchus3.2.1:1:1:210400635:1	135081853	135128710	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014660}; WD40 repeat-containing protein SMU1 {ECO:0000313|EMBL:JAB01787.1}  [Source:UniProtKB/TrEMBL;Acc:F7HXH3]
ENSCJAG00000002467	NOVEL	protein_coding	ENSCJAG00000002467	chromosome:C_jacchus3.2.1:10:1:132174527:1	21508042	21509028	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004500}  [Source:UniProtKB/TrEMBL;Acc:F6UG62]
ENSCJAG00000008022	KNOWN	protein_coding	DNAJA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	135059601	135073642	D	DnaJ homolog subfamily A member 1 {ECO:0000313|EMBL:JAB04365.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014859}  [Source:UniProtKB/TrEMBL;Acc:F7I6Q8]
ENSCJAG00000019681	KNOWN	protein_coding	MAT2A	chromosome:C_jacchus3.2.1:14:1:108792865:1	21016618	21022731	R	S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}  [Source:UniProtKB/TrEMBL;Acc:F7F996]
ENSCJAG00000012604	KNOWN_BY_PROJECTION	protein_coding	TMEM63A	chromosome:C_jacchus3.2.1:19:1:49578535:1	17891766	17928326	D	transmembrane protein 63A [Source:HGNC Symbol;Acc:HGNC:29118]
ENSCJAG00000001895	KNOWN_BY_PROJECTION	protein_coding	WDR81	chromosome:C_jacchus3.2.1:5:1:159171411:1	61787061	61809528	R	WD repeat domain 81 [Source:HGNC Symbol;Acc:HGNC:26600]
ENSCJAG00000002511	KNOWN_BY_PROJECTION	protein_coding	SMARCC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	23287931	23480624	R	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
ENSCJAG00000007309	KNOWN	protein_coding	NUP107	chromosome:C_jacchus3.2.1:9:1:124281992:1	57986023	58044255	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013800}  [Source:UniProtKB/TrEMBL;Acc:F7CB17]
ENSCJAG00000021622	KNOWN_BY_PROJECTION	protein_coding	SLC39A7	chromosome:C_jacchus3.2.1:4:1:171630274:1	34002807	34006413	D	solute carrier family 39 (zinc transporter), member 7 [Source:HGNC Symbol;Acc:HGNC:4927]
ENSCJAG00000001889	KNOWN_BY_PROJECTION	protein_coding	SERPINF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	61773474	61782280	R	serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 [Source:HGNC Symbol;Acc:HGNC:9075]
ENSCJAG00000034074	NOVEL	protein_coding	ENSCJAG00000034074	chromosome:C_jacchus3.2.1:5:1:159171411:1	61757638	61770711	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047677}  [Source:UniProtKB/TrEMBL;Acc:F7GS95]
ENSCJAG00000010537	KNOWN	protein_coding	USP47	chromosome:C_jacchus3.2.1:11:1:130397257:1	75309780	75452625	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7I5L2]
ENSCJAG00000035770	KNOWN	protein_coding	PYCR2	chromosome:C_jacchus3.2.1:19:1:49578535:1	17853476	17857824	D	Pyrroline-5-carboxylate reductase {ECO:0000256|RuleBase:RU003903}  [Source:UniProtKB/TrEMBL;Acc:L7N0W5]
ENSCJAG00000002443	KNOWN	protein_coding	CASC4	chromosome:C_jacchus3.2.1:10:1:132174527:1	21439404	21573409	D	Protein CASC4 isoform b {ECO:0000313|EMBL:JAB01860.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004483}  [Source:UniProtKB/TrEMBL;Acc:F6W961]
ENSCJAG00000002475	NOVEL	pseudogene	ENSCJAG00000002475	chromosome:C_jacchus3.2.1:10:1:132174527:1	21158834	21159621	D	<no descrition>
ENSCJAG00000002478	NOVEL	protein_coding	FRMD5	chromosome:C_jacchus3.2.1:10:1:132174527:1	20950067	21004452	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004549}  [Source:UniProtKB/TrEMBL;Acc:F7C4V5]
ENSCJAG00000010607	KNOWN_BY_PROJECTION	protein_coding	GALNT18	chromosome:C_jacchus3.2.1:11:1:130397257:1	74785567	74839273	R	polypeptide N-acetylgalactosaminyltransferase 18 [Source:HGNC Symbol;Acc:HGNC:30488]
ENSCJAG00000001881	KNOWN_BY_PROJECTION	protein_coding	SERPINF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	61744124	61797206	R	serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 [Source:HGNC Symbol;Acc:HGNC:8824]
ENSCJAG00000010619	KNOWN_BY_PROJECTION	protein_coding	ZBED5	chromosome:C_jacchus3.2.1:11:1:130397257:1	74290418	74295775	R	zinc finger, BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]
ENSCJAG00000034216	NOVEL	pseudogene	ENSCJAG00000034216	chromosome:C_jacchus3.2.1:11:1:130397257:1	74333209	74334332	R	<no descrition>
ENSCJAG00000002499	KNOWN	protein_coding	CSPG5	chromosome:C_jacchus3.2.1:15:1:98464013:1	23263188	23281689	R	Chondroitin sulfate proteoglycan 5 isoform 3 {ECO:0000313|EMBL:JAB14684.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004558}  [Source:UniProtKB/TrEMBL;Acc:F7C480]
ENSCJAG00000010623	NOVEL	protein_coding	ENSCJAG00000010623	chromosome:C_jacchus3.2.1:11:1:130397257:1	74255362	74256704	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019575}  [Source:UniProtKB/TrEMBL;Acc:F6QCI7]
ENSCJAG00000002481	NOVEL	protein_coding	ENSCJAG00000002481	chromosome:C_jacchus3.2.1:15:1:98464013:1	23219336	23220512	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052160}  [Source:UniProtKB/TrEMBL;Acc:F7HY23]
ENSCJAG00000032990	NOVEL	protein_coding	ENSCJAG00000032990	chromosome:C_jacchus3.2.1:15:1:98464013:1	23187982	23189607	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043046}  [Source:UniProtKB/TrEMBL;Acc:F7HWF0]
ENSCJAG00000002465	KNOWN_BY_PROJECTION	protein_coding	ELP6	chromosome:C_jacchus3.2.1:15:1:98464013:1	23156166	23177141	R	elongator acetyltransferase complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:25976]
ENSCJAG00000012665	NOVEL	protein_coding	ENSCJAG00000012665	chromosome:C_jacchus3.2.1:19:1:49578535:1	17836249	17888450	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049129}  [Source:UniProtKB/TrEMBL;Acc:F7BJU4]
ENSCJAG00000002460	NOVEL	pseudogene	ENSCJAG00000002460	chromosome:C_jacchus3.2.1:15:1:98464013:1	23134346	23134746	R	<no descrition>
ENSCJAG00000019657	KNOWN_BY_PROJECTION	protein_coding	GGCX	chromosome:C_jacchus3.2.1:14:1:108792865:1	20998927	21012052	D	gamma-glutamyl carboxylase [Source:HGNC Symbol;Acc:HGNC:4247]
ENSCJAG00000010633	KNOWN_BY_PROJECTION	protein_coding	EIF4G2	chromosome:C_jacchus3.2.1:11:1:130397257:1	74229741	74241730	R	eukaryotic translation initiation factor 4 gamma, 2 [Source:HGNC Symbol;Acc:HGNC:3297]
ENSCJAG00000001865	KNOWN	protein_coding	SMYD4	chromosome:C_jacchus3.2.1:5:1:159171411:1	61695611	61741333	D	SET and MYND domain-containing protein 4 {ECO:0000313|EMBL:JAB21388.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003370}  [Source:UniProtKB/TrEMBL;Acc:F7DV48]
ENSCJAG00000012685	KNOWN	protein_coding	SDE2	chromosome:C_jacchus3.2.1:19:1:49578535:1	17796222	17809332	D	Protein SDE2 homolog {ECO:0000313|EMBL:JAB31155.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023253}  [Source:UniProtKB/TrEMBL;Acc:F7IKP2]
ENSCJAG00000019655	KNOWN_BY_PROJECTION	protein_coding	VAMP8	chromosome:C_jacchus3.2.1:14:1:108792865:1	20971634	20977145	R	vesicle-associated membrane protein 8 [Source:HGNC Symbol;Acc:HGNC:12647]
ENSCJAG00000012702	KNOWN_BY_PROJECTION	protein_coding	H3F3B	chromosome:C_jacchus3.2.1:19:1:49578535:1	17724450	17733135	R	H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:HGNC:4765]
ENSCJAG00000019651	KNOWN_BY_PROJECTION	protein_coding	VAMP5	chromosome:C_jacchus3.2.1:14:1:108792865:1	20962252	20969278	R	vesicle-associated membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:12646]
ENSCJAG00000007212	KNOWN_BY_PROJECTION	protein_coding	PSAP	chromosome:C_jacchus3.2.1:12:1:121768101:1	52280170	52318161	D	prosaposin [Source:HGNC Symbol;Acc:HGNC:9498]
ENSCJAG00000001848	KNOWN	protein_coding	RPA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	61633856	61695397	R	Replication protein A 70 kDa DNA-binding subunit {ECO:0000313|EMBL:JAB08737.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003334}  [Source:UniProtKB/TrEMBL;Acc:F7EMG6]
ENSCJAG00000019647	KNOWN	protein_coding	ENSCJAG00000019647	chromosome:C_jacchus3.2.1:14:1:108792865:1	20957166	20959131	R	E3 ubiquitin-protein ligase RNF181 {ECO:0000313|EMBL:JAB02241.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036473}  [Source:UniProtKB/TrEMBL;Acc:F7HIP8]
ENSCJAG00000002419	KNOWN_BY_PROJECTION	protein_coding	SCAP	chromosome:C_jacchus3.2.1:15:1:98464013:1	23060833	23125064	R	SREBF chaperone [Source:HGNC Symbol;Acc:HGNC:30634]
ENSCJAG00000001844	KNOWN	protein_coding	RTN4RL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	61472906	61568206	D	Reticulon-4 receptor-like 1 {ECO:0000313|EMBL:JAB16645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003300}  [Source:UniProtKB/TrEMBL;Acc:F7EN55]
ENSCJAG00000001833	NOVEL	protein_coding	ENSCJAG00000001833	chromosome:C_jacchus3.2.1:5:1:159171411:1	61432630	61433368	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003275}  [Source:UniProtKB/TrEMBL;Acc:F7GHK6]
ENSCJAG00000001837	KNOWN	protein_coding	OVCA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	61448250	61449296	R	Ovarian cancer-associated gene 2 protein {ECO:0000313|EMBL:JAB09413.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003283}  [Source:UniProtKB/TrEMBL;Acc:F7G6E1]
ENSCJAG00000019638	KNOWN	protein_coding	TMEM150A	chromosome:C_jacchus3.2.1:14:1:108792865:1	20952499	20956638	D	Transmembrane protein 150A {ECO:0000313|EMBL:JAB03727.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036465}  [Source:UniProtKB/TrEMBL;Acc:F7D6T7]
ENSCJAG00000037277	KNOWN_BY_PROJECTION	protein_coding	HIC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	61432607	61435370	R	hypermethylated in cancer 1 [Source:HGNC Symbol;Acc:HGNC:4909]
ENSCJAG00000001830	NOVEL	pseudogene	ENSCJAG00000001830	chromosome:C_jacchus3.2.1:5:1:159171411:1	61375245	61376034	D	<no descrition>
ENSCJAG00000019632	KNOWN	protein_coding	C2ORF68	chromosome:C_jacchus3.2.1:14:1:108792865:1	20943528	20946290	D	UPF0561 protein C2orf68 {ECO:0000313|EMBL:JAB10238.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036449}  [Source:UniProtKB/TrEMBL;Acc:F7DPH6]
ENSCJAG00000012717	KNOWN	protein_coding	ACBD3	chromosome:C_jacchus3.2.1:19:1:49578535:1	17613074	17655762	D	Golgi resident protein GCP60 {ECO:0000313|EMBL:JAB09394.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023324}  [Source:UniProtKB/TrEMBL;Acc:F7I8U4]
ENSCJAG00000007940	KNOWN_BY_PROJECTION	protein_coding	APTX	chromosome:C_jacchus3.2.1:1:1:210400635:1	135010440	135033723	R	aprataxin [Source:HGNC Symbol;Acc:HGNC:15984]
ENSCJAG00000007248	KNOWN	protein_coding	CHST3	chromosome:C_jacchus3.2.1:12:1:121768101:1	52152082	52154837	R	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F6UUA6]
ENSCJAG00000021619	KNOWN_BY_PROJECTION	protein_coding	RXRB	chromosome:C_jacchus3.2.1:4:1:171630274:1	33995593	34002834	R	retinoid X receptor, beta [Source:HGNC Symbol;Acc:HGNC:10478]
ENSCJAG00000001820	KNOWN_BY_PROJECTION	protein_coding	SMG6	chromosome:C_jacchus3.2.1:5:1:159171411:1	61185439	61428451	D	SMG6 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:17809]
ENSCJAG00000012740	KNOWN_BY_PROJECTION	protein_coding	MIXL1	chromosome:C_jacchus3.2.1:19:1:49578535:1	17574605	17576739	R	Mix paired-like homeobox [Source:HGNC Symbol;Acc:HGNC:13363]
ENSCJAG00000007261	KNOWN	protein_coding	RAP1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	57923512	57966744	D	Ras-related protein Rap-1b isoform 1 {ECO:0000313|EMBL:JAB05630.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043923}  [Source:UniProtKB/TrEMBL;Acc:F7HVS0]
ENSCJAG00000007938	NOVEL	pseudogene	ENSCJAG00000007938	chromosome:C_jacchus3.2.1:1:1:210400635:1	135008713	135010297	R	<no descrition>
ENSCJAG00000007933	NOVEL	pseudogene	ENSCJAG00000007933	chromosome:C_jacchus3.2.1:1:1:210400635:1	134967305	134967621	D	<no descrition>
ENSCJAG00000035355	KNOWN_BY_PROJECTION	protein_coding	TMEM215	chromosome:C_jacchus3.2.1:1:1:210400635:1	134810424	134813938	D	transmembrane protein 215 [Source:HGNC Symbol;Acc:HGNC:33816]
ENSCJAG00000007852	KNOWN	protein_coding	ENSCJAG00000007852	chromosome:C_jacchus3.2.1:1:1:210400635:1	134593076	134612241	R	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 isoform 1 {ECO:0000313|EMBL:JAB07129.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014554}  [Source:UniProtKB/TrEMBL;Acc:F7IGE5]
ENSCJAG00000007840	KNOWN	protein_coding	TOPORS	chromosome:C_jacchus3.2.1:1:1:210400635:1	134580169	134592078	R	E3 ubiquitin-protein ligase Topors isoform 1 {ECO:0000313|EMBL:JAB21974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014529}  [Source:UniProtKB/TrEMBL;Acc:F7IL27]
ENSCJAG00000002506	KNOWN_BY_PROJECTION	protein_coding	WDR76	chromosome:C_jacchus3.2.1:10:1:132174527:1	20900853	20943473	D	WD repeat domain 76 [Source:HGNC Symbol;Acc:HGNC:25773]
ENSCJAG00000012478	KNOWN	protein_coding	SRR	chromosome:C_jacchus3.2.1:5:1:159171411:1	61162783	61185205	R	Serine racemase {ECO:0000313|EMBL:JAB19402.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022868}  [Source:UniProtKB/TrEMBL;Acc:F7IS39]
ENSCJAG00000002529	KNOWN	protein_coding	MFAP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	20880303	20898630	R	Microfibrillar-associated protein 1 {ECO:0000313|EMBL:JAB11343.1}; Microfibrillar-associated protein 1 (Predicted) {ECO:0000313|EMBL:ABY84150.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004609}  [Source:UniProtKB/TrEMBL;Acc:B0KWG5]
ENSCJAG00000010795	KNOWN	protein_coding	CTR9	chromosome:C_jacchus3.2.1:11:1:130397257:1	74183654	74210618	D	RNA polymerase-associated protein CTR9 homolog {ECO:0000313|EMBL:JAB04324.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020046}  [Source:UniProtKB/TrEMBL;Acc:F7D3T8]
ENSCJAG00000002397	KNOWN_BY_PROJECTION	protein_coding	PTPN23	chromosome:C_jacchus3.2.1:15:1:98464013:1	23028439	23060577	D	protein tyrosine phosphatase, non-receptor type 23 [Source:HGNC Symbol;Acc:HGNC:14406]
ENSCJAG00000007252	KNOWN_BY_PROJECTION	protein_coding	SPOCK2	chromosome:C_jacchus3.2.1:12:1:121768101:1	52063436	52090923	D	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 [Source:HGNC Symbol;Acc:HGNC:13564]
ENSCJAG00000012456	KNOWN	protein_coding	TSR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	61149644	61164408	D	Pre-rRNA-processing protein TSR1 homolog {ECO:0000313|EMBL:JAB06697.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022834}  [Source:UniProtKB/TrEMBL;Acc:F7HTJ7]
ENSCJAG00000002552	NOVEL	protein_coding	SERINC4	chromosome:C_jacchus3.2.1:10:1:132174527:1	20871029	20876238	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004653}  [Source:UniProtKB/TrEMBL;Acc:F6Y1C7]
ENSCJAG00000002541	KNOWN	protein_coding	SERF2	chromosome:C_jacchus3.2.1:10:1:132174527:1	20869090	20877992	D	Small EDRK-rich factor 2 (Predicted) {ECO:0000313|EMBL:ABY84147.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004617}  [Source:UniProtKB/TrEMBL;Acc:B0KWG2]
ENSCJAG00000007273	KNOWN_BY_PROJECTION	protein_coding	ASCC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	51910605	52016329	D	activating signal cointegrator 1 complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:24268]
ENSCJAG00000002569	NOVEL	protein_coding	ENSCJAG00000002569	chromosome:C_jacchus3.2.1:10:1:132174527:1	20859939	20860505	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004668}  [Source:UniProtKB/TrEMBL;Acc:F6XD00]
ENSCJAG00000007741	KNOWN	protein_coding	DDX58	chromosome:C_jacchus3.2.1:1:1:210400635:1	134493651	134566534	R	Putative ATP-dependent RNA helicase DDX58 {ECO:0000313|EMBL:JAB11213.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014513}  [Source:UniProtKB/TrEMBL;Acc:F7IL46]
ENSCJAG00000012743	KNOWN	protein_coding	LIN9	chromosome:C_jacchus3.2.1:19:1:49578535:1	17488050	17568466	D	Protein lin-9 homolog isoform 1 {ECO:0000313|EMBL:JAB02615.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023479}  [Source:UniProtKB/TrEMBL;Acc:F7IKD4]
ENSCJAG00000002386	KNOWN	protein_coding	KLHL18	chromosome:C_jacchus3.2.1:15:1:98464013:1	22936199	23003455	D	Kelch-like protein 18 {ECO:0000313|EMBL:JAB18710.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004337}  [Source:UniProtKB/TrEMBL;Acc:F7CKM5]
ENSCJAG00000007687	KNOWN_BY_PROJECTION	protein_coding	ACO1	chromosome:C_jacchus3.2.1:1:1:210400635:1	134440233	134491758	D	aconitase 1, soluble [Source:HGNC Symbol;Acc:HGNC:117]
ENSCJAG00000002385	NOVEL	pseudogene	ENSCJAG00000002385	chromosome:C_jacchus3.2.1:15:1:98464013:1	22914986	22915431	R	<no descrition>
ENSCJAG00000007675	NOVEL	protein_coding	ENSCJAG00000007675	chromosome:C_jacchus3.2.1:1:1:210400635:1	131745921	131746472	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014218}  [Source:UniProtKB/TrEMBL;Acc:F7HVE8]
ENSCJAG00000033114	NOVEL	protein_coding	ENSCJAG00000033114	chromosome:C_jacchus3.2.1:1:1:210400635:1	131039800	131040820	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045265}  [Source:UniProtKB/TrEMBL;Acc:F6QG94]
ENSCJAG00000034557	NOVEL	protein_coding	ENSCJAG00000034557	chromosome:C_jacchus3.2.1:1:1:210400635:1	130987745	130988995	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042556}  [Source:UniProtKB/TrEMBL;Acc:F6V5U8]
ENSCJAG00000022711	KNOWN_BY_PROJECTION	protein_coding	LINGO2	chromosome:C_jacchus3.2.1:1:1:210400635:1	129929192	130016627	R	leucine rich repeat and Ig domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21207]
ENSCJAG00000019594	KNOWN	protein_coding	USP39	chromosome:C_jacchus3.2.1:14:1:108792865:1	20902149	20952337	R	U4/U6.U5 tri-snRNP-associated protein 2 isoform 1 {ECO:0000313|EMBL:JAB02910.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050379}  [Source:UniProtKB/TrEMBL;Acc:F7FBT4]
ENSCJAG00000012412	KNOWN_BY_PROJECTION	protein_coding	SGSM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	61104091	61149063	R	small G protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29026]
ENSCJAG00000012389	KNOWN	protein_coding	MNT	chromosome:C_jacchus3.2.1:5:1:159171411:1	61081176	61096968	D	Max-binding protein MNT {ECO:0000313|EMBL:JAB03449.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022723}  [Source:UniProtKB/TrEMBL;Acc:F7IFG5]
ENSCJAG00000002342	KNOWN_BY_PROJECTION	protein_coding	KIF9	chromosome:C_jacchus3.2.1:15:1:98464013:1	22882800	22936206	R	kinesin family member 9 [Source:HGNC Symbol;Acc:HGNC:16666]
ENSCJAG00000012375	KNOWN_BY_PROJECTION	protein_coding	METTL16	chromosome:C_jacchus3.2.1:5:1:159171411:1	60927571	61060252	D	methyltransferase like 16 [Source:HGNC Symbol;Acc:HGNC:28484]
ENSCJAG00000010880	KNOWN_BY_PROJECTION	protein_coding	MRVI1	chromosome:C_jacchus3.2.1:11:1:130397257:1	73990294	74118677	R	murine retrovirus integration site 1 homolog [Source:HGNC Symbol;Acc:HGNC:7237]
ENSCJAG00000005723	KNOWN_BY_PROJECTION	protein_coding	PTPN13	chromosome:C_jacchus3.2.1:3:1:190850796:1	107274599	107560821	R	protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) [Source:HGNC Symbol;Acc:HGNC:9646]
ENSCJAG00000019573	KNOWN_BY_PROJECTION	protein_coding	GNLY	chromosome:C_jacchus3.2.1:14:1:108792865:1	20834296	20837508	R	granulysin [Source:HGNC Symbol;Acc:HGNC:4414]
ENSCJAG00000019571	KNOWN	protein_coding	ATOH8	chromosome:C_jacchus3.2.1:14:1:108792865:1	20764001	20774286	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036343}  [Source:UniProtKB/TrEMBL;Acc:F7GY06]
ENSCJAG00000019581	KNOWN_BY_PROJECTION	protein_coding	SFTPB	chromosome:C_jacchus3.2.1:14:1:108792865:1	20709915	20890610	D	surfactant protein B [Source:HGNC Symbol;Acc:HGNC:10801]
ENSCJAG00000012831	KNOWN	protein_coding	PARP1	chromosome:C_jacchus3.2.1:19:1:49578535:1	17387733	17436976	D	Poly [ADP-ribose] polymerase 1 {ECO:0000313|EMBL:JAB26857.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023591}  [Source:UniProtKB/TrEMBL;Acc:F7E4K2]
ENSCJAG00000012884	NOVEL	protein_coding	ENSCJAG00000012884	chromosome:C_jacchus3.2.1:19:1:49578535:1	17346522	17347653	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023604}  [Source:UniProtKB/TrEMBL;Acc:F7D6I1]
ENSCJAG00000002572	KNOWN	protein_coding	ELL3	chromosome:C_jacchus3.2.1:10:1:132174527:1	20844491	20850033	R	Elongation factor RNA polymerase II-like 3 (Predicted) {ECO:0000313|EMBL:ABY84146.1}; RNA polymerase II elongation factor ELL3 {ECO:0000313|EMBL:JAB08503.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004694}  [Source:UniProtKB/TrEMBL;Acc:B0KWG1]
ENSCJAG00000012889	KNOWN_BY_PROJECTION	protein_coding	C1orf95	chromosome:C_jacchus3.2.1:19:1:49578535:1	17194481	17250120	R	chromosome 1 open reading frame 95 [Source:HGNC Symbol;Acc:HGNC:30491]
ENSCJAG00000012894	KNOWN	protein_coding	ITPKB	chromosome:C_jacchus3.2.1:19:1:49578535:1	17055135	17159047	D	Inositol-trisphosphate 3-kinase B {ECO:0000313|EMBL:JAB09207.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023643}  [Source:UniProtKB/TrEMBL;Acc:F7HD76]
ENSCJAG00000019564	KNOWN	protein_coding	ST3GAL5	chromosome:C_jacchus3.2.1:14:1:108792865:1	20622325	20675232	D	Lactosylceramide alpha-2,3-sialyltransferase isoform 1 {ECO:0000313|EMBL:JAB07180.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036338}  [Source:UniProtKB/TrEMBL;Acc:F7GY79]
ENSCJAG00000012908	KNOWN_BY_PROJECTION	protein_coding	PSEN2	chromosome:C_jacchus3.2.1:19:1:49578535:1	16931522	16946569	R	presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]
ENSCJAG00000002303	KNOWN_BY_PROJECTION	protein_coding	SETD2	chromosome:C_jacchus3.2.1:15:1:98464013:1	22663447	22769030	R	SET domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18420]
ENSCJAG00000018440	KNOWN	protein_coding	C9ORF72	chromosome:C_jacchus3.2.1:1:1:210400635:1	129514221	129544011	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034201}; Uncharacterized protein C9orf72 isoform a {ECO:0000313|EMBL:JAB09212.1}  [Source:UniProtKB/TrEMBL;Acc:F6UMV6]
ENSCJAG00000012325	KNOWN	protein_coding	PAFAH1B1	chromosome:C_jacchus3.2.1:5:1:159171411:1	60738944	60837098	R	Platelet-activating factor acetylhydrolase IB subunit alpha {ECO:0000256|HAMAP-Rule:MF_03141}  [Source:UniProtKB/TrEMBL;Acc:F7HTN3]
ENSCJAG00000011002	KNOWN	protein_coding	LYVE1	chromosome:C_jacchus3.2.1:11:1:130397257:1	73971297	73986939	R	Lymphatic vessel endothelial hyaluronic acid receptor 1 {ECO:0000313|EMBL:JAB04319.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020315}  [Source:UniProtKB/TrEMBL;Acc:F7H6X6]
ENSCJAG00000018438	KNOWN_BY_PROJECTION	protein_coding	IFNK	chromosome:C_jacchus3.2.1:1:1:210400635:1	129492403	129494547	D	interferon, kappa [Source:HGNC Symbol;Acc:HGNC:21714]
ENSCJAG00000007287	KNOWN	protein_coding	ANAPC16	chromosome:C_jacchus3.2.1:12:1:121768101:1	51893773	51911648	R	Anaphase-promoting complex subunit 16 isoform 1 {ECO:0000313|EMBL:JAB03374.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013581}  [Source:UniProtKB/TrEMBL;Acc:F6X634]
ENSCJAG00000006028	NOVEL	pseudogene	ENSCJAG00000006028	chromosome:C_jacchus3.2.1:3:1:190850796:1	107249043	107249620	D	<no descrition>
ENSCJAG00000018430	KNOWN	protein_coding	MOB3B	chromosome:C_jacchus3.2.1:1:1:210400635:1	129276583	129497815	R	MOB kinase activator 3B {ECO:0000313|EMBL:JAB03934.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034159}  [Source:UniProtKB/TrEMBL;Acc:F6WEX5]
ENSCJAG00000002591	KNOWN	protein_coding	PDIA3	chromosome:C_jacchus3.2.1:10:1:132174527:1	20819023	20844476	D	Protein disulfide-isomerase {ECO:0000256|RuleBase:RU361130}  [Source:UniProtKB/TrEMBL;Acc:B0KWG0]
ENSCJAG00000012281	KNOWN_BY_PROJECTION	protein_coding	CLUH	chromosome:C_jacchus3.2.1:5:1:159171411:1	60720062	60734627	D	clustered mitochondria (cluA/CLU1) homolog [Source:HGNC Symbol;Acc:HGNC:29094]
ENSCJAG00000012277	NOVEL	pseudogene	ENSCJAG00000012277	chromosome:C_jacchus3.2.1:5:1:159171411:1	60507536	60508233	R	<no descrition>
ENSCJAG00000007297	KNOWN	protein_coding	DDIT4	chromosome:C_jacchus3.2.1:12:1:121768101:1	51853687	51855801	R	DNA damage-inducible transcript 4 protein {ECO:0000313|EMBL:JAB06758.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013587}  [Source:UniProtKB/TrEMBL;Acc:F6X5P2]
ENSCJAG00000012272	NOVEL	pseudogene	ENSCJAG00000012272	chromosome:C_jacchus3.2.1:5:1:159171411:1	60473146	60474359	D	<no descrition>
ENSCJAG00000012239	KNOWN_BY_PROJECTION	protein_coding	RAP1GAP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	60404304	60470761	R	RAP1 GTPase activating protein 2 [Source:HGNC Symbol;Acc:HGNC:29176]
ENSCJAG00000011014	KNOWN	protein_coding	RNF141	chromosome:C_jacchus3.2.1:11:1:130397257:1	73931128	73960909	R	RING finger protein 141 {ECO:0000313|EMBL:JAB03353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020350}  [Source:UniProtKB/TrEMBL;Acc:F7GRH4]
ENSCJAG00000006010	KNOWN_BY_PROJECTION	protein_coding	SLC10A6	chromosome:C_jacchus3.2.1:3:1:190850796:1	107236792	107266402	D	solute carrier family 10 (sodium/bile acid cotransporter), member 6 [Source:HGNC Symbol;Acc:HGNC:30603]
ENSCJAG00000012823	NOVEL	pseudogene	ENSCJAG00000012823	chromosome:C_jacchus3.2.1:5:1:159171411:1	60386735	60387176	D	<no descrition>
ENSCJAG00000032989	NOVEL	protein_coding	ENSCJAG00000032989	chromosome:C_jacchus3.2.1:5:1:159171411:1	60268387	60268877	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044529}  [Source:UniProtKB/TrEMBL;Acc:F7GJQ5]
ENSCJAG00000006033	NOVEL	protein_coding	ENSCJAG00000006033	chromosome:C_jacchus3.2.1:3:1:190850796:1	107219261	107220414	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011097}  [Source:UniProtKB/TrEMBL;Acc:F7IBD5]
ENSCJAG00000021694	NOVEL	pseudogene	ENSCJAG00000021694	chromosome:C_jacchus3.2.1:5:1:159171411:1	60154598	60155312	R	<no descrition>
ENSCJAG00000006045	KNOWN_BY_PROJECTION	protein_coding	C4orf36	chromosome:C_jacchus3.2.1:3:1:190850796:1	107205295	107211284	D	chromosome 4 open reading frame 36 [Source:HGNC Symbol;Acc:HGNC:28386]
ENSCJAG00000018426	KNOWN_BY_PROJECTION	protein_coding	EQTN	chromosome:C_jacchus3.2.1:1:1:210400635:1	129239191	129250574	R	equatorin, sperm acrosome associated [Source:HGNC Symbol;Acc:HGNC:1359]
ENSCJAG00000006046	NOVEL	protein_coding	ENSCJAG00000006046	chromosome:C_jacchus3.2.1:3:1:190850796:1	107200191	107201673	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011102}  [Source:UniProtKB/TrEMBL;Acc:F7I6J4]
ENSCJAG00000031604	NOVEL	protein_coding	ENSCJAG00000031604	chromosome:C_jacchus3.2.1:1:1:210400635:1	129204735	129220875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044516}  [Source:UniProtKB/TrEMBL;Acc:F7GK65]
ENSCJAG00000002284	KNOWN_BY_PROJECTION	protein_coding	NBEAL2	chromosome:C_jacchus3.2.1:15:1:98464013:1	22623834	22657280	D	neurobeachin-like 2 [Source:HGNC Symbol;Acc:HGNC:31928]
ENSCJAG00000007230	KNOWN_BY_PROJECTION	protein_coding	MDM1	chromosome:C_jacchus3.2.1:9:1:124281992:1	57608778	57646556	R	Mdm1 nuclear protein homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:29917]
ENSCJAG00000018394	KNOWN_BY_PROJECTION	protein_coding	TEK	chromosome:C_jacchus3.2.1:1:1:210400635:1	129092952	129195985	D	TEK tyrosine kinase, endothelial [Source:HGNC Symbol;Acc:HGNC:11724]
ENSCJAG00000002280	KNOWN_BY_PROJECTION	protein_coding	CCDC12	chromosome:C_jacchus3.2.1:15:1:98464013:1	22568067	22621268	R	coiled-coil domain containing 12 [Source:HGNC Symbol;Acc:HGNC:28332]
ENSCJAG00000021695	KNOWN_BY_PROJECTION	protein_coding	SPECC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	59810703	60216747	R	sperm antigen with calponin homology and coiled-coil domains 1 [Source:HGNC Symbol;Acc:HGNC:30615]
ENSCJAG00000018391	KNOWN_BY_PROJECTION	protein_coding	LRRC19	chromosome:C_jacchus3.2.1:1:1:210400635:1	128952609	128969008	R	leucine rich repeat containing 19 [Source:HGNC Symbol;Acc:HGNC:23379]
ENSCJAG00000002241	KNOWN	protein_coding	MYL3	chromosome:C_jacchus3.2.1:15:1:98464013:1	22505687	22511249	R	Myosin light chain 3 {ECO:0000313|EMBL:JAB37762.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004042}  [Source:UniProtKB/TrEMBL;Acc:F6Y6X9]
ENSCJAG00000007349	NOVEL	protein_coding	ENSCJAG00000007349	chromosome:C_jacchus3.2.1:12:1:121768101:1	51731962	51732437	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013680}  [Source:UniProtKB/TrEMBL;Acc:F7AX80]
ENSCJAG00000007303	KNOWN	protein_coding	DNAJB12	chromosome:C_jacchus3.2.1:12:1:121768101:1	51773896	51797387	D	DnaJ homolog subfamily B member 12 {ECO:0000313|EMBL:JAB39591.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013621}  [Source:UniProtKB/TrEMBL;Acc:F7CSU9]
ENSCJAG00000033806	NOVEL	protein_coding	ENSCJAG00000033806	chromosome:C_jacchus3.2.1:12:1:121768101:1	51584889	51585833	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046145}  [Source:UniProtKB/TrEMBL;Acc:F6WDV6]
ENSCJAG00000002254	KNOWN_BY_PROJECTION	protein_coding	PTH1R	chromosome:C_jacchus3.2.1:15:1:98464013:1	22455781	22551862	D	parathyroid hormone 1 receptor [Source:HGNC Symbol;Acc:HGNC:9608]
ENSCJAG00000007195	KNOWN_BY_PROJECTION	protein_coding	IL22	chromosome:C_jacchus3.2.1:9:1:124281992:1	57562027	57566571	R	interleukin 22 [Source:HGNC Symbol;Acc:HGNC:14900]
ENSCJAG00000011041	KNOWN_BY_PROJECTION	protein_coding	AMPD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	73865845	73926469	D	adenosine monophosphate deaminase 3 [Source:HGNC Symbol;Acc:HGNC:470]
ENSCJAG00000021697	NOVEL	protein_coding	ENSCJAG00000021697	chromosome:C_jacchus3.2.1:5:1:159171411:1	59752542	59754224	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040402}  [Source:UniProtKB/TrEMBL;Acc:F7IGN0]
ENSCJAG00000034516	NOVEL	protein_coding	ENSCJAG00000034516	chromosome:C_jacchus3.2.1:5:1:159171411:1	59741876	59742648	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050288}  [Source:UniProtKB/TrEMBL;Acc:F7EYW0]
ENSCJAG00000007192	KNOWN_BY_PROJECTION	protein_coding	IL26	chromosome:C_jacchus3.2.1:9:1:124281992:1	57517475	57539097	R	interleukin 26 [Source:HGNC Symbol;Acc:HGNC:17119]
ENSCJAG00000019547	KNOWN_BY_PROJECTION	protein_coding	POLR1A	chromosome:C_jacchus3.2.1:14:1:108792865:1	20412127	20490230	D	polymerase (RNA) I polypeptide A, 194kDa [Source:HGNC Symbol;Acc:HGNC:17264]
ENSCJAG00000002237	NOVEL	protein_coding	ENSCJAG00000002237	chromosome:C_jacchus3.2.1:15:1:98464013:1	22455087	22457605	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004019}  [Source:UniProtKB/TrEMBL;Acc:F6YR04]
ENSCJAG00000034679	NOVEL	protein_coding	ENSCJAG00000034679	chromosome:C_jacchus3.2.1:15:1:98464013:1	22420564	22422774	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047080}  [Source:UniProtKB/TrEMBL;Acc:F7I6L4]
ENSCJAG00000002232	KNOWN_BY_PROJECTION	protein_coding	PRSS45	chromosome:C_jacchus3.2.1:15:1:98464013:1	22408542	22411178	R	protease, serine, 45 [Source:HGNC Symbol;Acc:HGNC:30717]
ENSCJAG00000002220	KNOWN_BY_PROJECTION	protein_coding	PRSS50	chromosome:C_jacchus3.2.1:15:1:98464013:1	22372785	22403491	R	protease, serine, 50 [Source:HGNC Symbol;Acc:HGNC:17910]
ENSCJAG00000002217	KNOWN	protein_coding	TMIE	chromosome:C_jacchus3.2.1:15:1:98464013:1	22362033	22370941	D	Transmembrane inner ear expressed protein {ECO:0000313|EMBL:JAB19947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003986}  [Source:UniProtKB/TrEMBL;Acc:F7DBE1]
ENSCJAG00000006047	KNOWN_BY_PROJECTION	protein_coding	AFF1	chromosome:C_jacchus3.2.1:3:1:190850796:1	106956894	107158396	R	AF4/FMR2 family, member 1 [Source:HGNC Symbol;Acc:HGNC:7135]
ENSCJAG00000002182	KNOWN	protein_coding	ALS2CL	chromosome:C_jacchus3.2.1:15:1:98464013:1	22324762	22344018	R	ALS2 C-terminal-like protein isoform 1 {ECO:0000313|EMBL:JAB06844.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003975}  [Source:UniProtKB/TrEMBL;Acc:F7DSH5]
ENSCJAG00000035155	NOVEL	pseudogene	ENSCJAG00000035155	chromosome:C_jacchus3.2.1:3:1:190850796:1	106877727	106878397	R	<no descrition>
ENSCJAG00000012948	KNOWN	protein_coding	ADCK3	chromosome:C_jacchus3.2.1:19:1:49578535:1	16854983	16896249	R	Chaperone activity of bc1 complex-like, mitochondrial {ECO:0000313|EMBL:JAB10374.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050319}  [Source:UniProtKB/TrEMBL;Acc:F7GNJ3]
ENSCJAG00000018308	KNOWN	protein_coding	IFT74	chromosome:C_jacchus3.2.1:1:1:210400635:1	128912487	129034379	D	Intraflagellar transport protein 74 homolog isoform a {ECO:0000313|EMBL:JAB12654.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034053}  [Source:UniProtKB/TrEMBL;Acc:F6ZUJ5]
ENSCJAG00000007181	KNOWN	protein_coding	IFNG	chromosome:C_jacchus3.2.1:9:1:124281992:1	57482426	57487407	R	Callithrix jacchus interferon, gamma (IFNG), mRNA. [Source:RefSeq mRNA;Acc:NM_001257226]
ENSCJAG00000007177	KNOWN_BY_PROJECTION	protein_coding	DYRK2	chromosome:C_jacchus3.2.1:9:1:124281992:1	56965116	56975988	D	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 [Source:HGNC Symbol;Acc:HGNC:3093]
ENSCJAG00000019523	KNOWN	protein_coding	PTCD3	chromosome:C_jacchus3.2.1:14:1:108792865:1	20380441	20412041	R	Pentatricopeptide repeat-containing protein 3, mitochondrial {ECO:0000313|EMBL:JAB46475.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036301}  [Source:UniProtKB/TrEMBL;Acc:F7HDS3]
ENSCJAG00000002174	KNOWN_BY_PROJECTION	protein_coding	TDGF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	22250214	22253909	D	teratocarcinoma-derived growth factor 1 [Source:HGNC Symbol;Acc:HGNC:11701]
ENSCJAG00000011137	KNOWN_BY_PROJECTION	protein_coding	ADM	chromosome:C_jacchus3.2.1:11:1:130397257:1	73731696	73734021	D	adrenomedullin [Source:HGNC Symbol;Acc:HGNC:259]
ENSCJAG00000002149	KNOWN	protein_coding	LRRC2	chromosome:C_jacchus3.2.1:15:1:98464013:1	22189562	22252795	R	Leucine-rich repeat-containing protein 2 {ECO:0000313|EMBL:JAB35255.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003888}  [Source:UniProtKB/TrEMBL;Acc:F7GG53]
ENSCJAG00000011250	NOVEL	pseudogene	ENSCJAG00000011250	chromosome:C_jacchus3.2.1:11:1:130397257:1	73348029	73348821	R	<no descrition>
ENSCJAG00000002148	KNOWN_BY_PROJECTION	protein_coding	RTP3	chromosome:C_jacchus3.2.1:15:1:98464013:1	22168732	22171647	D	receptor (chemosensory) transporter protein 3 [Source:HGNC Symbol;Acc:HGNC:15572]
ENSCJAG00000007320	KNOWN_BY_PROJECTION	protein_coding	MICU1	chromosome:C_jacchus3.2.1:12:1:121768101:1	51512196	51763759	D	mitochondrial calcium uptake 1 [Source:HGNC Symbol;Acc:HGNC:1530]
ENSCJAG00000007987	KNOWN	protein_coding	CAAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	128780082	128850253	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014779}  [Source:UniProtKB/TrEMBL;Acc:F7IIJ7]
ENSCJAG00000007921	KNOWN	protein_coding	PLAA	chromosome:C_jacchus3.2.1:1:1:210400635:1	128860968	128912919	R	Phospholipase A-2-activating protein {ECO:0000313|EMBL:JAB05151.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014750}  [Source:UniProtKB/TrEMBL;Acc:F7IKX0]
ENSCJAG00000019480	KNOWN	protein_coding	IMMT	chromosome:C_jacchus3.2.1:14:1:108792865:1	20319042	20374385	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036253}  [Source:UniProtKB/TrEMBL;Acc:F7EXF8]
ENSCJAG00000006088	KNOWN	protein_coding	KLHL8	chromosome:C_jacchus3.2.1:3:1:190850796:1	106866642	106930996	D	Kelch-like protein 8 {ECO:0000313|EMBL:JAB12956.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011237}  [Source:UniProtKB/TrEMBL;Acc:F7IQE8]
ENSCJAG00000006120	KNOWN_BY_PROJECTION	protein_coding	HSD17B13	chromosome:C_jacchus3.2.1:3:1:190850796:1	106766856	106788032	D	hydroxysteroid (17-beta) dehydrogenase 13 [Source:HGNC Symbol;Acc:HGNC:18685]
ENSCJAG00000019467	KNOWN	protein_coding	ENSCJAG00000019467	chromosome:C_jacchus3.2.1:14:1:108792865:1	20297759	20312988	R	39S ribosomal protein L35, mitochondrial isoform a {ECO:0000313|EMBL:JAB04139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036160}  [Source:UniProtKB/TrEMBL;Acc:F7H913]
ENSCJAG00000007351	KNOWN	protein_coding	MCU	chromosome:C_jacchus3.2.1:12:1:121768101:1	51190732	51404984	R	Calcium uniporter protein, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB30620.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013764}  [Source:UniProtKB/TrEMBL;Acc:F6WH26]
ENSCJAG00000021698	KNOWN	protein_coding	ABR	chromosome:C_jacchus3.2.1:5:1:159171411:1	59503684	59616945	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040403}  [Source:UniProtKB/TrEMBL;Acc:F7IGM8]
ENSCJAG00000011147	KNOWN	protein_coding	SBF2	chromosome:C_jacchus3.2.1:11:1:130397257:1	73244061	73720668	R	Myotubularin-related protein 13 {ECO:0000313|EMBL:JAB19007.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020702}  [Source:UniProtKB/TrEMBL;Acc:F7HBG4]
ENSCJAG00000007918	NOVEL	pseudogene	ENSCJAG00000007918	chromosome:C_jacchus3.2.1:1:1:210400635:1	128524029	128526175	R	<no descrition>
ENSCJAG00000019465	KNOWN_BY_PROJECTION	protein_coding	REEP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	20174678	20296035	D	receptor accessory protein 1 [Source:HGNC Symbol;Acc:HGNC:25786]
ENSCJAG00000006150	KNOWN	protein_coding	HSD17B11	chromosome:C_jacchus3.2.1:3:1:190850796:1	106690453	106742901	D	Estradiol 17-beta-dehydrogenase 11 {ECO:0000313|EMBL:JAB04210.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011306}  [Source:UniProtKB/TrEMBL;Acc:F7IDG3]
ENSCJAG00000007916	NOVEL	pseudogene	ENSCJAG00000007916	chromosome:C_jacchus3.2.1:1:1:210400635:1	128083379	128084234	R	<no descrition>
ENSCJAG00000002108	KNOWN_BY_PROJECTION	protein_coding	LTF	chromosome:C_jacchus3.2.1:15:1:98464013:1	22100527	22130261	R	lactotransferrin [Source:HGNC Symbol;Acc:HGNC:6720]
ENSCJAG00000022750	NOVEL	pseudogene	ENSCJAG00000022750	chromosome:C_jacchus3.2.1:1:1:210400635:1	128031258	128032276	D	<no descrition>
ENSCJAG00000033552	NOVEL	protein_coding	ENSCJAG00000033552	chromosome:C_jacchus3.2.1:1:1:210400635:1	127970463	127971786	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043158}  [Source:UniProtKB/TrEMBL;Acc:F7IM62]
ENSCJAG00000007902	NOVEL	protein_coding	ENSCJAG00000007902	chromosome:C_jacchus3.2.1:1:1:210400635:1	127976495	127990098	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014639}  [Source:UniProtKB/TrEMBL;Acc:F7I258]
ENSCJAG00000008084	KNOWN_BY_PROJECTION	protein_coding	IZUMO3	chromosome:C_jacchus3.2.1:1:1:210400635:1	126315851	126318547	R	IZUMO family member 3 [Source:HGNC Symbol;Acc:HGNC:31421]
ENSCJAG00000021699	KNOWN_BY_PROJECTION	protein_coding	TIMM22	chromosome:C_jacchus3.2.1:5:1:159171411:1	59492499	59496054	D	translocase of inner mitochondrial membrane 22 homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:17317]
ENSCJAG00000021700	NOVEL	protein_coding	ENSCJAG00000021700	chromosome:C_jacchus3.2.1:5:1:159171411:1	59307682	59331754	R	<no descrition>
ENSCJAG00000007405	KNOWN_BY_PROJECTION	protein_coding	OIT3	chromosome:C_jacchus3.2.1:12:1:121768101:1	51143579	51183703	R	oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
ENSCJAG00000021701	KNOWN_BY_PROJECTION	protein_coding	RNMTL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	59290144	59299360	D	RNA methyltransferase like 1 [Source:HGNC Symbol;Acc:HGNC:18485]
ENSCJAG00000011252	KNOWN	protein_coding	SWAP70	chromosome:C_jacchus3.2.1:11:1:130397257:1	73112818	73213094	D	Switch-associated protein 70 {ECO:0000313|EMBL:JAB02394.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020759}  [Source:UniProtKB/TrEMBL;Acc:F7GVU8]
ENSCJAG00000007420	KNOWN_BY_PROJECTION	protein_coding	PLA2G12B	chromosome:C_jacchus3.2.1:12:1:121768101:1	51121189	51141439	D	phospholipase A2, group XIIB [Source:HGNC Symbol;Acc:HGNC:18555]
ENSCJAG00000011290	NOVEL	pseudogene	ENSCJAG00000011290	chromosome:C_jacchus3.2.1:11:1:130397257:1	73072558	73073053	R	<no descrition>
ENSCJAG00000021702	KNOWN_BY_PROJECTION	protein_coding	GLOD4	chromosome:C_jacchus3.2.1:5:1:159171411:1	59272475	59291118	R	glyoxalase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:14111]
ENSCJAG00000007471	NOVEL	protein_coding	ENSCJAG00000007471	chromosome:C_jacchus3.2.1:12:1:121768101:1	50997117	51000648	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013884}  [Source:UniProtKB/TrEMBL;Acc:F6ZVY5]
ENSCJAG00000011292	KNOWN_BY_PROJECTION	protein_coding	WEE1	chromosome:C_jacchus3.2.1:11:1:130397257:1	73004207	73023099	D	WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]
ENSCJAG00000011390	NOVEL	pseudogene	ENSCJAG00000011390	chromosome:C_jacchus3.2.1:11:1:130397257:1	72890119	72890497	R	<no descrition>
ENSCJAG00000008064	KNOWN	protein_coding	ELAVL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	125480106	125618624	R	ELAV-like protein 2 isoform a {ECO:0000313|EMBL:JAB19318.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014920}  [Source:UniProtKB/TrEMBL;Acc:F7HX77]
ENSCJAG00000021704	KNOWN	protein_coding	FAM57A	chromosome:C_jacchus3.2.1:5:1:159171411:1	59250943	59258198	D	Protein FAM57A {ECO:0000313|EMBL:JAB02920.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040415}  [Source:UniProtKB/TrEMBL;Acc:F7IEA2]
ENSCJAG00000021703	NOVEL	pseudogene	ENSCJAG00000021703	chromosome:C_jacchus3.2.1:5:1:159171411:1	59261836	59263235	R	<no descrition>
ENSCJAG00000014782	KNOWN_BY_PROJECTION	protein_coding	PCMTD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	58178079	58187168	D	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
ENSCJAG00000010712	KNOWN	protein_coding	OPRL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	58116059	58125574	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019739}  [Source:UniProtKB/TrEMBL;Acc:F6XJD5]
ENSCJAG00000021831	KNOWN_BY_PROJECTION	protein_coding	CCRL2	chromosome:C_jacchus3.2.1:15:1:98464013:1	22078022	22080360	D	chemokine (C-C motif) receptor-like 2 [Source:HGNC Symbol;Acc:HGNC:1612]
ENSCJAG00000007105	KNOWN	protein_coding	CAND1	chromosome:C_jacchus3.2.1:9:1:124281992:1	56509867	56556828	D	Cullin-associated NEDD8-dissociated protein 1 {ECO:0000313|EMBL:JAB11165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051823}  [Source:UniProtKB/TrEMBL;Acc:F6XT20]
ENSCJAG00000010705	KNOWN_BY_PROJECTION	protein_coding	LKAAEAR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	58105489	58106489	R	LKAAEAR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:33718]
ENSCJAG00000008059	KNOWN_BY_PROJECTION	protein_coding	DMRTA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	124359138	124364712	D	DMRT-like family A1 [Source:HGNC Symbol;Acc:HGNC:13826]
ENSCJAG00000002107	KNOWN	protein_coding	CCR5	chromosome:C_jacchus3.2.1:15:1:98464013:1	22044568	22048442	D	Callithrix jacchus chemokine (C-C motif) receptor 5 (CCR5), mRNA. [Source:RefSeq mRNA;Acc:NM_001257216]
ENSCJAG00000010687	KNOWN	protein_coding	RGS19	chromosome:C_jacchus3.2.1:5:1:159171411:1	58094092	58099386	R	Regulator of G-protein signaling 19 {ECO:0000313|EMBL:JAB09017.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019706}  [Source:UniProtKB/TrEMBL;Acc:F6Y7W4]
ENSCJAG00000002106	KNOWN_BY_PROJECTION	protein_coding	CCR2	chromosome:C_jacchus3.2.1:15:1:98464013:1	22027056	22034195	D	chemokine (C-C motif) receptor 2 [Source:HGNC Symbol;Acc:HGNC:1603]
ENSCJAG00000002100	KNOWN_BY_PROJECTION	protein_coding	CCR3	chromosome:C_jacchus3.2.1:15:1:98464013:1	21933334	22025886	D	chemokine (C-C motif) receptor 3 [Source:HGNC Symbol;Acc:HGNC:1604]
ENSCJAG00000021830	KNOWN	protein_coding	CCR1	chromosome:C_jacchus3.2.1:15:1:98464013:1	21893075	21898598	R	Callithrix jacchus chemokine (C-C motif) receptor 1 (CCR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001185041]
ENSCJAG00000021829	KNOWN_BY_PROJECTION	protein_coding	XCR1	chromosome:C_jacchus3.2.1:15:1:98464013:1	21712817	21720274	R	chemokine (C motif) receptor 1 [Source:HGNC Symbol;Acc:HGNC:1625]
ENSCJAG00000011327	KNOWN	protein_coding	ZNF143	chromosome:C_jacchus3.2.1:11:1:130397257:1	72887068	72966487	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020928}; Zinc finger protein 143 {ECO:0000313|EMBL:JAB10828.1}  [Source:UniProtKB/TrEMBL;Acc:F7H638]
ENSCJAG00000002095	KNOWN_BY_PROJECTION	protein_coding	CXCR6	chromosome:C_jacchus3.2.1:15:1:98464013:1	21631246	21636120	D	chemokine (C-X-C motif) receptor 6 [Source:HGNC Symbol;Acc:HGNC:16647]
ENSCJAG00000007103	NOVEL	protein_coding	ENSCJAG00000007103	chromosome:C_jacchus3.2.1:9:1:124281992:1	56503130	56504748	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013181}  [Source:UniProtKB/TrEMBL;Acc:F7C125]
ENSCJAG00000010658	KNOWN_BY_PROJECTION	protein_coding	TCEA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	58083545	58092512	D	transcription elongation factor A (SII), 2 [Source:HGNC Symbol;Acc:HGNC:11614]
ENSCJAG00000022379	KNOWN_BY_PROJECTION	protein_coding	SOX18	chromosome:C_jacchus3.2.1:5:1:159171411:1	58070445	58074564	R	SRY (sex determining region Y)-box 18 [Source:HGNC Symbol;Acc:HGNC:11194]
ENSCJAG00000002057	KNOWN_BY_PROJECTION	protein_coding	FYCO1	chromosome:C_jacchus3.2.1:15:1:98464013:1	21607254	21685993	R	FYVE and coiled-coil domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14673]
ENSCJAG00000021577	KNOWN_BY_PROJECTION	protein_coding	COL11A2	chromosome:C_jacchus3.2.1:4:1:171630274:1	33965807	33994255	R	collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
ENSCJAG00000008048	KNOWN	protein_coding	ENSCJAG00000008048	chromosome:C_jacchus3.2.1:1:1:210400635:1	123889134	123929914	R	Cyclin-dependent kinase 4 inhibitor B isoform 1 {ECO:0000313|EMBL:JAB16768.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014857}  [Source:UniProtKB/TrEMBL;Acc:F7I6R0]
ENSCJAG00000006159	KNOWN	protein_coding	NUDT9	chromosome:C_jacchus3.2.1:3:1:190850796:1	106612488	106649108	R	ADP-ribose pyrophosphatase, mitochondrial isoform a {ECO:0000313|EMBL:JAB05257.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011356}  [Source:UniProtKB/TrEMBL;Acc:F7I8R9]
ENSCJAG00000008021	KNOWN	protein_coding	ENSCJAG00000008021	chromosome:C_jacchus3.2.1:1:1:210400635:1	123710944	123956049	D	S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_03155}  [Source:UniProtKB/TrEMBL;Acc:F7I6R4]
ENSCJAG00000002053	KNOWN_BY_PROJECTION	protein_coding	CCR9	chromosome:C_jacchus3.2.1:15:1:98464013:1	21577347	21592935	D	chemokine (C-C motif) receptor 9 [Source:HGNC Symbol;Acc:HGNC:1610]
ENSCJAG00000002035	NOVEL	protein_coding	ENSCJAG00000002035	chromosome:C_jacchus3.2.1:15:1:98464013:1	21516676	21528256	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003696}  [Source:UniProtKB/TrEMBL;Acc:F7GP76]
ENSCJAG00000002021	KNOWN_BY_PROJECTION	protein_coding	SLC6A20	chromosome:C_jacchus3.2.1:15:1:98464013:1	21457022	21494788	R	solute carrier family 6 (proline IMINO transporter), member 20 [Source:HGNC Symbol;Acc:HGNC:30927]
ENSCJAG00000008162	NOVEL	pseudogene	ENSCJAG00000008162	chromosome:C_jacchus3.2.1:1:1:210400635:1	123341008	123341706	D	<no descrition>
ENSCJAG00000032294	NOVEL	protein_coding	ENSCJAG00000032294	chromosome:C_jacchus3.2.1:1:1:210400635:1	123266765	123316830	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048230}  [Source:UniProtKB/TrEMBL;Acc:F7EXA6]
ENSCJAG00000007429	KNOWN	protein_coding	P4HA1	chromosome:C_jacchus3.2.1:12:1:121768101:1	50973692	51071702	D	Prolyl 4-hydroxylase subunit alpha-1 isoform 2 {ECO:0000313|EMBL:JAB09089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013879}  [Source:UniProtKB/TrEMBL;Acc:F7ACM2]
ENSCJAG00000031807	NOVEL	protein_coding	ENSCJAG00000031807	chromosome:C_jacchus3.2.1:12:1:121768101:1	50942365	50943281	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013917}  [Source:UniProtKB/TrEMBL;Acc:F6XQ89]
ENSCJAG00000007473	NOVEL	protein_coding	ENSCJAG00000007473	chromosome:C_jacchus3.2.1:12:1:121768101:1	50957240	50957748	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013889}  [Source:UniProtKB/TrEMBL;Acc:F6ZVP4]
ENSCJAG00000012980	KNOWN	protein_coding	CDC42BPA	chromosome:C_jacchus3.2.1:19:1:49578535:1	16524140	16847875	D	Serine/threonine-protein kinase MRCK alpha isoform B {ECO:0000313|EMBL:JAB11463.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024078}  [Source:UniProtKB/TrEMBL;Acc:F7G3D2]
ENSCJAG00000021576	NOVEL	protein_coding	ENSCJAG00000021576	chromosome:C_jacchus3.2.1:4:1:171630274:1	33933494	33944619	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040159}  [Source:UniProtKB/TrEMBL;Acc:F7I0F5]
ENSCJAG00000011395	KNOWN	protein_coding	IPO7	chromosome:C_jacchus3.2.1:11:1:130397257:1	72816050	72882058	D	Importin-7 {ECO:0000313|EMBL:JAB10786.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021037}  [Source:UniProtKB/TrEMBL;Acc:F6PVN7]
ENSCJAG00000014483	KNOWN_BY_PROJECTION	protein_coding	GRIP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	55538792	55875290	R	glutamate receptor interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:18708]
ENSCJAG00000001977	KNOWN	protein_coding	SACM1L	chromosome:C_jacchus3.2.1:15:1:98464013:1	21385372	21445568	D	Phosphatidylinositide phosphatase SAC1 {ECO:0000313|EMBL:JAB02928.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003639}  [Source:UniProtKB/TrEMBL;Acc:F7H9S3]
ENSCJAG00000037831	KNOWN	protein_coding	CATSPER2	chromosome:C_jacchus3.2.1:10:1:132174527:1	20798322	20818893	R	Cation channel sperm-associated protein 2 isoform 2 {ECO:0000313|EMBL:JAB15067.1}; Sperm-associated cation channel 2 isoform 2 (Predicted) {ECO:0000313|EMBL:ABY84144.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004793}  [Source:UniProtKB/TrEMBL;Acc:B0KWF6]
ENSCJAG00000011454	KNOWN	protein_coding	TMEM41B	chromosome:C_jacchus3.2.1:11:1:130397257:1	72724493	72758381	R	Transmembrane protein 41B isoform 1 {ECO:0000313|EMBL:JAB14473.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021058}  [Source:UniProtKB/TrEMBL;Acc:F6U6D9]
ENSCJAG00000008870	KNOWN	protein_coding	PTPLAD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	123035922	123064761	R	3-hydroxyacyl-CoA dehydratase 4 {ECO:0000313|EMBL:JAB05922.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016253}  [Source:UniProtKB/TrEMBL;Acc:F6WUZ8]
ENSCJAG00000006192	KNOWN	protein_coding	SPARCL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	106537173	106597628	D	SPARC-like protein 1 {ECO:0000313|EMBL:JAB05733.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048199}  [Source:UniProtKB/TrEMBL;Acc:F7GYE4]
ENSCJAG00000001970	KNOWN_BY_PROJECTION	protein_coding	LIMD1	chromosome:C_jacchus3.2.1:15:1:98464013:1	21287038	21372573	D	LIM domains containing 1 [Source:HGNC Symbol;Acc:HGNC:6612]
ENSCJAG00000001949	KNOWN_BY_PROJECTION	protein_coding	LARS2	chromosome:C_jacchus3.2.1:15:1:98464013:1	21066995	21234017	D	leucyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:17095]
ENSCJAG00000014511	KNOWN_BY_PROJECTION	protein_coding	HELB	chromosome:C_jacchus3.2.1:9:1:124281992:1	55487412	55536387	D	helicase (DNA) B [Source:HGNC Symbol;Acc:HGNC:17196]
ENSCJAG00000011458	KNOWN_BY_PROJECTION	protein_coding	DENND5A	chromosome:C_jacchus3.2.1:11:1:130397257:1	72576311	72703511	R	DENN/MADD domain containing 5A [Source:HGNC Symbol;Acc:HGNC:19344]
ENSCJAG00000006227	KNOWN_BY_PROJECTION	protein_coding	DSPP	chromosome:C_jacchus3.2.1:3:1:190850796:1	106457211	106461935	R	dentin sialophosphoprotein [Source:HGNC Symbol;Acc:HGNC:3054]
ENSCJAG00000001944	KNOWN_BY_PROJECTION	protein_coding	CDCP1	chromosome:C_jacchus3.2.1:15:1:98464013:1	20763845	20834138	R	CUB domain containing protein 1 [Source:HGNC Symbol;Acc:HGNC:24357]
ENSCJAG00000001939	KNOWN	protein_coding	CLEC3B	chromosome:C_jacchus3.2.1:15:1:98464013:1	20698827	20709716	D	Tetranectin {ECO:0000313|EMBL:JAB02124.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003498}  [Source:UniProtKB/TrEMBL;Acc:F7GGZ5]
ENSCJAG00000019414	KNOWN	protein_coding	KDM3A	chromosome:C_jacchus3.2.1:14:1:108792865:1	20009088	20064242	R	Lysine-specific demethylase 3A {ECO:0000313|EMBL:JAB03862.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036125}  [Source:UniProtKB/TrEMBL;Acc:F7D9Q3]
ENSCJAG00000007475	KNOWN	protein_coding	NUDT13	chromosome:C_jacchus3.2.1:12:1:121768101:1	50938534	50956971	R	Nucleoside diphosphate-linked moiety X motif 13 {ECO:0000313|EMBL:JAB27998.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013918}  [Source:UniProtKB/TrEMBL;Acc:F6XQ80]
ENSCJAG00000001928	KNOWN_BY_PROJECTION	protein_coding	EXOSC7	chromosome:C_jacchus3.2.1:15:1:98464013:1	20647290	20682322	D	exosome component 7 [Source:HGNC Symbol;Acc:HGNC:28112]
ENSCJAG00000013135	KNOWN	protein_coding	RHOU	chromosome:C_jacchus3.2.1:19:1:49578535:1	16309635	16318388	R	Rho-related GTP-binding protein RhoU {ECO:0000313|EMBL:JAB08080.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024119}  [Source:UniProtKB/TrEMBL;Acc:F7E6T5]
ENSCJAG00000001917	KNOWN	protein_coding	ZDHHC3	chromosome:C_jacchus3.2.1:15:1:98464013:1	20592639	20647191	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F7GUL6]
ENSCJAG00000001914	KNOWN	protein_coding	TMEM42	chromosome:C_jacchus3.2.1:15:1:98464013:1	20533440	20537118	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003441}  [Source:UniProtKB/TrEMBL;Acc:F7GZR8]
ENSCJAG00000006215	NOVEL	protein_coding	DMP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	106381085	106416500	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051585}  [Source:UniProtKB/TrEMBL;Acc:F6UB34]
ENSCJAG00000010616	KNOWN_BY_PROJECTION	protein_coding	PRPF6	chromosome:C_jacchus3.2.1:5:1:159171411:1	57994718	58055726	D	pre-mRNA processing factor 6 [Source:HGNC Symbol;Acc:HGNC:15860]
ENSCJAG00000011630	KNOWN_BY_PROJECTION	protein_coding	NRIP3	chromosome:C_jacchus3.2.1:11:1:130397257:1	72418774	72438529	R	nuclear receptor interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:1167]
ENSCJAG00000006272	KNOWN	protein_coding	SUOX	chromosome:C_jacchus3.2.1:3:1:190850796:1	106250261	106285763	D	Sulfite oxidase, mitochondrial {ECO:0000313|EMBL:JAB06319.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011557}  [Source:UniProtKB/TrEMBL;Acc:F7I8N4]
ENSCJAG00000011256	NOVEL	pseudogene	ENSCJAG00000011256	chromosome:C_jacchus3.2.1:19:1:49578535:1	15898957	15899264	R	<no descrition>
ENSCJAG00000036647	NOVEL	pseudogene	ENSCJAG00000036647	chromosome:C_jacchus3.2.1:19:1:49578535:1	15843528	15844656	R	<no descrition>
ENSCJAG00000010587	KNOWN_BY_PROJECTION	protein_coding	SAMD10	chromosome:C_jacchus3.2.1:5:1:159171411:1	57986489	57993178	R	sterile alpha motif domain containing 10 [Source:HGNC Symbol;Acc:HGNC:16129]
ENSCJAG00000014525	KNOWN_BY_PROJECTION	protein_coding	IRAK3	chromosome:C_jacchus3.2.1:9:1:124281992:1	55379250	55432244	D	interleukin-1 receptor-associated kinase 3 [Source:HGNC Symbol;Acc:HGNC:17020]
ENSCJAG00000001840	KNOWN_BY_PROJECTION	protein_coding	KIF15	chromosome:C_jacchus3.2.1:15:1:98464013:1	20448550	20528228	D	kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
ENSCJAG00000011215	KNOWN	protein_coding	RAB4A	chromosome:C_jacchus3.2.1:19:1:49578535:1	15843141	15878547	R	Ras-related protein Rab-4A isoform 1 {ECO:0000313|EMBL:JAB05456.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020704}  [Source:UniProtKB/TrEMBL;Acc:F7HBG0]
ENSCJAG00000001835	KNOWN	protein_coding	KIAA1143	chromosome:C_jacchus3.2.1:15:1:98464013:1	20445026	20448341	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003285}; Uncharacterized protein KIAA1143 {ECO:0000313|EMBL:JAB02313.1}  [Source:UniProtKB/TrEMBL;Acc:F7G6C9]
ENSCJAG00000001831	KNOWN_BY_PROJECTION	protein_coding	ZNF502	chromosome:C_jacchus3.2.1:15:1:98464013:1	20405105	20407619	D	zinc finger protein 502 [Source:HGNC Symbol;Acc:HGNC:23718]
ENSCJAG00000001827	KNOWN	protein_coding	ZNF35	chromosome:C_jacchus3.2.1:15:1:98464013:1	20356677	20366527	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043836}; Zinc finger protein 35 {ECO:0000313|EMBL:JAB10720.1}  [Source:UniProtKB/TrEMBL;Acc:F7IC93]
ENSCJAG00000001817	KNOWN	protein_coding	ZNF197	chromosome:C_jacchus3.2.1:15:1:98464013:1	20330240	20348729	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003266}; Zinc finger protein 197 isoform 1 {ECO:0000313|EMBL:JAB19590.1}  [Source:UniProtKB/TrEMBL;Acc:F7GPK9]
ENSCJAG00000019406	KNOWN	protein_coding	CHMP3	chromosome:C_jacchus3.2.1:14:1:108792865:1	19933946	19996247	D	Charged multivesicular body protein 3 isoform 1 {ECO:0000313|EMBL:JAB27969.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036039}  [Source:UniProtKB/TrEMBL;Acc:F7GN92]
ENSCJAG00000007511	KNOWN_BY_PROJECTION	protein_coding	ECD	chromosome:C_jacchus3.2.1:12:1:121768101:1	50904102	50935408	D	ecdysoneless homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17029]
ENSCJAG00000011187	KNOWN_BY_PROJECTION	protein_coding	CCSAP	chromosome:C_jacchus3.2.1:19:1:49578535:1	15807516	15828178	D	centriole, cilia and spindle-associated protein [Source:HGNC Symbol;Acc:HGNC:29578]
ENSCJAG00000021827	KNOWN_BY_PROJECTION	protein_coding	ZNF660	chromosome:C_jacchus3.2.1:15:1:98464013:1	20293905	20303932	D	zinc finger protein 660 [Source:HGNC Symbol;Acc:HGNC:26720]
ENSCJAG00000001803	KNOWN_BY_PROJECTION	protein_coding	ZKSCAN7	chromosome:C_jacchus3.2.1:15:1:98464013:1	20269087	20285956	D	zinc finger with KRAB and SCAN domains 7 [Source:HGNC Symbol;Acc:HGNC:12955]
ENSCJAG00000008887	KNOWN	protein_coding	FOCAD	chromosome:C_jacchus3.2.1:1:1:210400635:1	122761465	123025951	D	Focadhesin {ECO:0000313|EMBL:JAB04339.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016446}  [Source:UniProtKB/TrEMBL;Acc:F6XEJ8]
ENSCJAG00000006284	KNOWN_BY_PROJECTION	protein_coding	IBSP	chromosome:C_jacchus3.2.1:3:1:190850796:1	106227906	106240546	R	integrin-binding sialoprotein [Source:HGNC Symbol;Acc:HGNC:5341]
ENSCJAG00000001799	NOVEL	protein_coding	ENSCJAG00000001799	chromosome:C_jacchus3.2.1:15:1:98464013:1	20243670	20245139	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003208}  [Source:UniProtKB/TrEMBL;Acc:F7GUZ6]
ENSCJAG00000001780	KNOWN	protein_coding	ZNF445	chromosome:C_jacchus3.2.1:15:1:98464013:1	20159487	20168729	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003196}; Zinc finger protein 445 {ECO:0000313|EMBL:JAB10806.1}  [Source:UniProtKB/TrEMBL;Acc:F7HFN5]
ENSCJAG00000006230	KNOWN_BY_PROJECTION	protein_coding	IKZF4	chromosome:C_jacchus3.2.1:3:1:190850796:1	106199117	106319354	D	IKAROS family zinc finger 4 (Eos) [Source:HGNC Symbol;Acc:HGNC:13179]
ENSCJAG00000021575	KNOWN_BY_PROJECTION	protein_coding	HLA-DPB1	chromosome:C_jacchus3.2.1:4:1:171630274:1	33909383	33945548	D	major histocompatibility complex, class II, DP beta 1 [Source:HGNC Symbol;Acc:HGNC:4940]
ENSCJAG00000010518	KNOWN	protein_coding	UCKL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	57952758	57968147	R	Uridine-cytidine kinase {ECO:0000256|RuleBase:RU003825}  [Source:UniProtKB/TrEMBL;Acc:F6VUW7]
ENSCJAG00000009041	NOVEL	pseudogene	ENSCJAG00000009041	chromosome:C_jacchus3.2.1:1:1:210400635:1	122571914	122572712	D	<no descrition>
ENSCJAG00000001771	KNOWN	protein_coding	TCAIM	chromosome:C_jacchus3.2.1:15:1:98464013:1	20047047	20119809	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045762}; Uncharacterized protein C3orf23 isoform 1 {ECO:0000313|EMBL:JAB09118.1}  [Source:UniProtKB/TrEMBL;Acc:F6SGM2]
ENSCJAG00000014558	KNOWN	protein_coding	TMBIM4	chromosome:C_jacchus3.2.1:9:1:124281992:1	55315057	55356032	R	Protein lifeguard 4 {ECO:0000313|EMBL:JAB05402.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026793}  [Source:UniProtKB/TrEMBL;Acc:F7IDT3]
ENSCJAG00000001760	KNOWN	protein_coding	TOPAZ1	chromosome:C_jacchus3.2.1:15:1:98464013:1	19949139	20040835	D	Testis- and ovary-specific PAZ domain-containing protein 1  [Source:UniProtKB/Swiss-Prot;Acc:F7DF15]
ENSCJAG00000011533	KNOWN_BY_PROJECTION	protein_coding	SCUBE2	chromosome:C_jacchus3.2.1:11:1:130397257:1	72406544	72524501	R	signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
ENSCJAG00000014565	NOVEL	pseudogene	ENSCJAG00000014565	chromosome:C_jacchus3.2.1:9:1:124281992:1	55198026	55198550	D	<no descrition>
ENSCJAG00000037995	KNOWN	protein_coding	RNF103	chromosome:C_jacchus3.2.1:14:1:108792865:1	19865068	19885575	D	E3 ubiquitin-protein ligase RNF103 isoform 1 {ECO:0000313|EMBL:JAB03239.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036038}  [Source:UniProtKB/TrEMBL;Acc:F7GN94]
ENSCJAG00000014576	NOVEL	protein_coding	ENSCJAG00000014576	chromosome:C_jacchus3.2.1:9:1:124281992:1	55045419	55060356	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026823}  [Source:UniProtKB/TrEMBL;Acc:F7I911]
ENSCJAG00000014566	KNOWN_BY_PROJECTION	protein_coding	HMGA2	chromosome:C_jacchus3.2.1:9:1:124281992:1	55004901	55141419	D	high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
ENSCJAG00000001747	KNOWN	protein_coding	ABHD5	chromosome:C_jacchus3.2.1:15:1:98464013:1	19335922	19367526	D	1-acylglycerol-3-phosphate O-acyltransferase ABHD5 {ECO:0000313|EMBL:JAB03866.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003143}  [Source:UniProtKB/TrEMBL;Acc:F7DVW7]
ENSCJAG00000010501	KNOWN	protein_coding	DNAJC5	chromosome:C_jacchus3.2.1:5:1:159171411:1	57908754	57944869	D	DnaJ homolog subfamily C member 5 {ECO:0000313|EMBL:JAB11184.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019396}  [Source:UniProtKB/TrEMBL;Acc:F6Q239]
ENSCJAG00000036932	NOVEL	protein_coding	ENSCJAG00000036932	chromosome:C_jacchus3.2.1:9:1:124281992:1	54996574	55023931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052290}  [Source:UniProtKB/TrEMBL;Acc:F7IGT1]
ENSCJAG00000014579	NOVEL	pseudogene	ENSCJAG00000014579	chromosome:C_jacchus3.2.1:9:1:124281992:1	54803279	54804028	R	<no descrition>
ENSCJAG00000032027	NOVEL	protein_coding	ENSCJAG00000032027	chromosome:C_jacchus3.2.1:9:1:124281992:1	54574147	54574879	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051852}  [Source:UniProtKB/TrEMBL;Acc:F6VZT3]
ENSCJAG00000021573	KNOWN_BY_PROJECTION	protein_coding	HLA-DPA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	33901972	33916088	R	major histocompatibility complex, class II, DP alpha 1 [Source:HGNC Symbol;Acc:HGNC:4938]
ENSCJAG00000011114	KNOWN_BY_PROJECTION	protein_coding	ACTA1	chromosome:C_jacchus3.2.1:19:1:49578535:1	15737622	15740446	D	actin, alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]
ENSCJAG00000001744	KNOWN	protein_coding	ANO10	chromosome:C_jacchus3.2.1:15:1:98464013:1	19038791	19284122	R	Anoctamin {ECO:0000256|RuleBase:RU280814}  [Source:UniProtKB/TrEMBL;Acc:F7HW10]
ENSCJAG00000007526	KNOWN	protein_coding	FAM149B1	chromosome:C_jacchus3.2.1:12:1:121768101:1	50847785	50904086	R	Protein FAM149B1 {ECO:0000313|EMBL:JAB08253.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047156}  [Source:UniProtKB/TrEMBL;Acc:F7HP81]
ENSCJAG00000019387	KNOWN	protein_coding	RMND5A	chromosome:C_jacchus3.2.1:14:1:108792865:1	19725574	19781554	R	Protein RMD5 homolog A {ECO:0000313|EMBL:JAB08304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036024}  [Source:UniProtKB/TrEMBL;Acc:F7GTI1]
ENSCJAG00000008994	KNOWN_BY_PROJECTION	protein_coding	MLLT3	chromosome:C_jacchus3.2.1:1:1:210400635:1	122384881	122657081	R	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 [Source:HGNC Symbol;Acc:HGNC:7136]
ENSCJAG00000006293	KNOWN_BY_PROJECTION	protein_coding	MEPE	chromosome:C_jacchus3.2.1:3:1:190850796:1	106196927	106219148	R	matrix extracellular phosphoglycoprotein [Source:HGNC Symbol;Acc:HGNC:13361]
ENSCJAG00000019376	KNOWN	protein_coding	CD8A	chromosome:C_jacchus3.2.1:14:1:108792865:1	19709016	19713747	D	CD8 alpha {ECO:0000313|EMBL:ABA29628.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035988}  [Source:UniProtKB/TrEMBL;Acc:Q3LRP5]
ENSCJAG00000007535	KNOWN_BY_PROJECTION	protein_coding	DNAJC9	chromosome:C_jacchus3.2.1:12:1:121768101:1	50841568	50846585	D	DnaJ (Hsp40) homolog, subfamily C, member 9 [Source:HGNC Symbol;Acc:HGNC:19123]
ENSCJAG00000010441	KNOWN	protein_coding	TPD52L2	chromosome:C_jacchus3.2.1:5:1:159171411:1	57878649	57902800	D	Tumor protein D54 isoform b {ECO:0000313|EMBL:JAB19351.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050585}  [Source:UniProtKB/TrEMBL;Acc:F7DQM4]
ENSCJAG00000014581	KNOWN	protein_coding	MSRB3	chromosome:C_jacchus3.2.1:9:1:124281992:1	54418748	54625952	D	Methionine-R-sulfoxide reductase B3 isoform 2 {ECO:0000313|EMBL:JAB07338.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026848}  [Source:UniProtKB/TrEMBL;Acc:F7I4D9]
ENSCJAG00000001727	KNOWN	protein_coding	SNRK	chromosome:C_jacchus3.2.1:15:1:98464013:1	18956231	19023633	D	SNF-related serine/threonine-protein kinase {ECO:0000313|EMBL:JAB09116.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003102}  [Source:UniProtKB/TrEMBL;Acc:F7EAB7]
ENSCJAG00000005478	KNOWN_BY_PROJECTION	protein_coding	ZNF625	chromosome:C_jacchus3.2.1:12:1:121768101:1	50816795	50817692	D	zinc finger protein 625 [Source:HGNC Symbol;Acc:HGNC:30571]
ENSCJAG00000009045	NOVEL	protein_coding	ENSCJAG00000009045	chromosome:C_jacchus3.2.1:1:1:210400635:1	122371986	122372845	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016562}  [Source:UniProtKB/TrEMBL;Acc:F7AMG6]
ENSCJAG00000021916	NOVEL	pseudogene	ENSCJAG00000021916	chromosome:C_jacchus3.2.1:12:1:121768101:1	50759717	50760140	D	<no descrition>
ENSCJAG00000001724	KNOWN_BY_PROJECTION	protein_coding	POMGNT2	chromosome:C_jacchus3.2.1:15:1:98464013:1	18739642	18764730	R	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [Source:HGNC Symbol;Acc:HGNC:25902]
ENSCJAG00000021571	KNOWN_BY_PROJECTION	protein_coding	HLA-DOA	chromosome:C_jacchus3.2.1:4:1:171630274:1	33846493	33850335	R	major histocompatibility complex, class II, DO alpha [Source:HGNC Symbol;Acc:HGNC:4936]
ENSCJAG00000014586	KNOWN	protein_coding	LEMD3	chromosome:C_jacchus3.2.1:9:1:124281992:1	54290531	54373301	D	Inner nuclear membrane protein Man1 isoform 1 {ECO:0000313|EMBL:JAB05192.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026914}  [Source:UniProtKB/TrEMBL;Acc:F7HUU5]
ENSCJAG00000011668	KNOWN	protein_coding	TMEM9B	chromosome:C_jacchus3.2.1:11:1:130397257:1	72386987	72403463	R	Transmembrane protein 9B {ECO:0000313|EMBL:JAB05659.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021465}  [Source:UniProtKB/TrEMBL;Acc:F6RAC2]
ENSCJAG00000019366	KNOWN_BY_PROJECTION	protein_coding	CD8B	chromosome:C_jacchus3.2.1:14:1:108792865:1	19632863	19681532	D	CD8b molecule [Source:HGNC Symbol;Acc:HGNC:1707]
ENSCJAG00000001716	KNOWN_BY_PROJECTION	protein_coding	FAM198A	chromosome:C_jacchus3.2.1:15:1:98464013:1	18651755	18728785	D	family with sequence similarity 198, member A [Source:HGNC Symbol;Acc:HGNC:24485]
ENSCJAG00000011693	KNOWN_BY_PROJECTION	protein_coding	ASCL3	chromosome:C_jacchus3.2.1:11:1:130397257:1	72368920	72374358	R	achaete-scute family bHLH transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:740]
ENSCJAG00000031316	KNOWN	protein_coding	KRBOX1	chromosome:C_jacchus3.2.1:15:1:98464013:1	18608120	18615309	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043782}  [Source:UniProtKB/TrEMBL;Acc:F7IP45]
ENSCJAG00000011696	KNOWN_BY_PROJECTION	protein_coding	C11orf16	chromosome:C_jacchus3.2.1:11:1:130397257:1	72355777	72365139	R	chromosome 11 open reading frame 16 [Source:HGNC Symbol;Acc:HGNC:1169]
ENSCJAG00000001707	KNOWN_BY_PROJECTION	protein_coding	ZNF662	chromosome:C_jacchus3.2.1:15:1:98464013:1	18580475	18587255	D	zinc finger protein 662 [Source:HGNC Symbol;Acc:HGNC:31930]
ENSCJAG00000011704	KNOWN	protein_coding	AKIP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	72346532	72354199	D	A-kinase-interacting protein 1 isoform a {ECO:0000313|EMBL:JAB03035.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021503}  [Source:UniProtKB/TrEMBL;Acc:F6PTS4]
ENSCJAG00000035456	NOVEL	protein_coding	ENSCJAG00000035456	chromosome:C_jacchus3.2.1:14:1:108792865:1	19618705	19619769	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048149}  [Source:UniProtKB/TrEMBL;Acc:F7H8W4]
ENSCJAG00000032886	NOVEL	pseudogene	ENSCJAG00000032886	chromosome:C_jacchus3.2.1:5:1:159171411:1	57857971	57858137	D	<no descrition>
ENSCJAG00000019362	KNOWN_BY_PROJECTION	protein_coding	KRCC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	19598269	19599559	D	lysine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:28039]
ENSCJAG00000006299	KNOWN	protein_coding	SPP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	106081639	106089168	R	Osteopontin isoform OPN-a {ECO:0000313|EMBL:JAB24076.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011617}  [Source:UniProtKB/TrEMBL;Acc:F7DN59]
ENSCJAG00000001693	KNOWN_BY_PROJECTION	protein_coding	RNF168	chromosome:C_jacchus3.2.1:15:1:98464013:1	18463338	18499928	D	ring finger protein 168, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:26661]
ENSCJAG00000019356	KNOWN_BY_PROJECTION	protein_coding	SMYD1	chromosome:C_jacchus3.2.1:14:1:108792865:1	19515015	19559647	R	SET and MYND domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20986]
ENSCJAG00000009047	KNOWN	protein_coding	SLC24A2	chromosome:C_jacchus3.2.1:1:1:210400635:1	121630149	121902232	R	Sodium/potassium/calcium exchanger 2 isoform 1 {ECO:0000313|EMBL:JAB17669.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016641}  [Source:UniProtKB/TrEMBL;Acc:F6XCU3]
ENSCJAG00000001690	KNOWN_BY_PROJECTION	protein_coding	SMCO1	chromosome:C_jacchus3.2.1:15:1:98464013:1	18451284	18458281	D	single-pass membrane protein with coiled-coil domains 1 [Source:HGNC Symbol;Acc:HGNC:27407]
ENSCJAG00000001689	KNOWN	protein_coding	WDR53	chromosome:C_jacchus3.2.1:15:1:98464013:1	18408447	18421592	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003009}; WD repeat-containing protein 53 {ECO:0000313|EMBL:JAB02932.1}  [Source:UniProtKB/TrEMBL;Acc:F7GQ57]
ENSCJAG00000001685	KNOWN_BY_PROJECTION	protein_coding	FBXO45	chromosome:C_jacchus3.2.1:15:1:98464013:1	18386855	18406117	R	F-box protein 45 [Source:HGNC Symbol;Acc:HGNC:29148]
ENSCJAG00000019353	KNOWN	protein_coding	FABP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	19498258	19503475	D	Fatty acid-binding protein, liver {ECO:0000313|EMBL:JAB16400.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035929}  [Source:UniProtKB/TrEMBL;Acc:F7FL19]
ENSCJAG00000009087	NOVEL	protein_coding	ENSCJAG00000009087	chromosome:C_jacchus3.2.1:1:1:210400635:1	121552926	121561062	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016660}  [Source:UniProtKB/TrEMBL;Acc:F6W784]
ENSCJAG00000019349	KNOWN	protein_coding	THNSL2	chromosome:C_jacchus3.2.1:14:1:108792865:1	19443413	19459079	R	Threonine synthase-like 2 isoform 1 {ECO:0000313|EMBL:JAB12803.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045937}  [Source:UniProtKB/TrEMBL;Acc:F6T1U5]
ENSCJAG00000001677	KNOWN_BY_PROJECTION	protein_coding	NRROS	chromosome:C_jacchus3.2.1:15:1:98464013:1	18314362	18345609	R	negative regulator of reactive oxygen species [Source:HGNC Symbol;Acc:HGNC:24613]
ENSCJAG00000019348	KNOWN_BY_PROJECTION	protein_coding	FOXI3	chromosome:C_jacchus3.2.1:14:1:108792865:1	19156526	19161370	D	forkhead box I3 [Source:HGNC Symbol;Acc:HGNC:35123]
ENSCJAG00000011712	NOVEL	protein_coding	ENSCJAG00000011712	chromosome:C_jacchus3.2.1:11:1:130397257:1	72131055	72173570	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021584}  [Source:UniProtKB/TrEMBL;Acc:F6T4I2]
ENSCJAG00000007468	KNOWN_BY_PROJECTION	protein_coding	TEX37	chromosome:C_jacchus3.2.1:14:1:108792865:1	19075439	19080345	R	testis expressed 37 [Source:HGNC Symbol;Acc:HGNC:26341]
ENSCJAG00000034224	NOVEL	pseudogene	ENSCJAG00000034224	chromosome:C_jacchus3.2.1:14:1:108792865:1	19045976	19046511	R	<no descrition>
ENSCJAG00000014629	KNOWN	protein_coding	WIF1	chromosome:C_jacchus3.2.1:9:1:124281992:1	54157434	54223519	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026960}  [Source:UniProtKB/TrEMBL;Acc:F7IQG8]
ENSCJAG00000013670	KNOWN_BY_PROJECTION	protein_coding	CEP19	chromosome:C_jacchus3.2.1:15:1:98464013:1	18279086	18284780	R	centrosomal protein 19kDa [Source:HGNC Symbol;Acc:HGNC:28209]
ENSCJAG00000011775	KNOWN_BY_PROJECTION	protein_coding	RPL27A	chromosome:C_jacchus3.2.1:11:1:130397257:1	72122281	72124442	D	ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329]
ENSCJAG00000014564	NOVEL	pseudogene	ENSCJAG00000014564	chromosome:C_jacchus3.2.1:11:1:130397257:1	72109078	72109424	D	<no descrition>
ENSCJAG00000033459	NOVEL	protein_coding	ENSCJAG00000033459	chromosome:C_jacchus3.2.1:15:1:98464013:1	18251359	18252421	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025143}  [Source:UniProtKB/TrEMBL;Acc:F7CGJ6]
ENSCJAG00000013676	KNOWN_BY_PROJECTION	protein_coding	PIGX	chromosome:C_jacchus3.2.1:15:1:98464013:1	18228532	18248180	R	phosphatidylinositol glycan anchor biosynthesis, class X [Source:HGNC Symbol;Acc:HGNC:26046]
ENSCJAG00000011040	KNOWN_BY_PROJECTION	protein_coding	NUP133	chromosome:C_jacchus3.2.1:19:1:49578535:1	15653033	15731050	D	nucleoporin 133kDa [Source:HGNC Symbol;Acc:HGNC:18016]
ENSCJAG00000011782	KNOWN_BY_PROJECTION	protein_coding	TRIM66	chromosome:C_jacchus3.2.1:11:1:130397257:1	72050348	72085099	R	tripartite motif containing 66 [Source:HGNC Symbol;Acc:HGNC:29005]
ENSCJAG00000013704	KNOWN	protein_coding	SENP5	chromosome:C_jacchus3.2.1:15:1:98464013:1	18048291	18110002	R	Sentrin-specific protease 5 {ECO:0000313|EMBL:JAB05948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025243}  [Source:UniProtKB/TrEMBL;Acc:F6X9D4]
ENSCJAG00000001756	KNOWN_BY_PROJECTION	protein_coding	CFAP70	chromosome:C_jacchus3.2.1:12:1:121768101:1	50711909	50835101	D	cilia and flagella associated protein 70 [Source:HGNC Symbol;Acc:HGNC:30726]
ENSCJAG00000013687	KNOWN	protein_coding	PAK2	chromosome:C_jacchus3.2.1:15:1:98464013:1	18143125	18222358	R	Serine/threonine-protein kinase PAK 2 {ECO:0000313|EMBL:JAB04621.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046282}  [Source:UniProtKB/TrEMBL;Acc:F7ASR5]
ENSCJAG00000009094	KNOWN_BY_PROJECTION	protein_coding	HAUS6	chromosome:C_jacchus3.2.1:1:1:210400635:1	121457555	121525804	D	HAUS augmin-like complex, subunit 6 [Source:HGNC Symbol;Acc:HGNC:25948]
ENSCJAG00000002654	NOVEL	protein_coding	STRC	chromosome:C_jacchus3.2.1:10:1:132174527:1	20765985	20799743	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043828}  [Source:UniProtKB/TrEMBL;Acc:F7ICC7]
ENSCJAG00000013735	KNOWN	protein_coding	NCBP2	chromosome:C_jacchus3.2.1:15:1:98464013:1	18036714	18044255	D	Nuclear cap-binding protein subunit 2 isoform 1 {ECO:0000313|EMBL:JAB10594.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042610}  [Source:UniProtKB/TrEMBL;Acc:F7B893]
ENSCJAG00000013744	KNOWN_BY_PROJECTION	protein_coding	EIF3J	chromosome:C_jacchus3.2.1:15:1:98464013:1	18020484	18021867	D	eukaryotic translation initiation factor 3, subunit J [Source:HGNC Symbol;Acc:HGNC:3270]
ENSCJAG00000021964	NOVEL	pseudogene	ENSCJAG00000021964	chromosome:C_jacchus3.2.1:11:1:130397257:1	72029053	72030364	R	<no descrition>
ENSCJAG00000013742	KNOWN_BY_PROJECTION	protein_coding	PIGZ	chromosome:C_jacchus3.2.1:15:1:98464013:1	18010002	18033850	D	phosphatidylinositol glycan anchor biosynthesis, class Z [Source:HGNC Symbol;Acc:HGNC:30596]
ENSCJAG00000010553	KNOWN_BY_PROJECTION	protein_coding	ZNF512B	chromosome:C_jacchus3.2.1:5:1:159171411:1	57814842	57978776	R	zinc finger protein 512B [Source:HGNC Symbol;Acc:HGNC:29212]
ENSCJAG00000011801	KNOWN	protein_coding	STK33	chromosome:C_jacchus3.2.1:11:1:130397257:1	71805349	71867686	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021666}  [Source:UniProtKB/TrEMBL;Acc:F6QZ09]
ENSCJAG00000007538	KNOWN	protein_coding	MRPS16	chromosome:C_jacchus3.2.1:12:1:121768101:1	50701835	50838081	D	28S ribosomal protein S16, mitochondrial {ECO:0000313|EMBL:JAB01782.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050304}  [Source:UniProtKB/TrEMBL;Acc:F7GYM4]
ENSCJAG00000010439	KNOWN_BY_PROJECTION	protein_coding	ZBTB46	chromosome:C_jacchus3.2.1:5:1:159171411:1	57755412	57814256	R	zinc finger and BTB domain containing 46 [Source:HGNC Symbol;Acc:HGNC:16094]
ENSCJAG00000011812	KNOWN	protein_coding	LMO1	chromosome:C_jacchus3.2.1:11:1:130397257:1	71627573	71674386	R	Rhombotin-1 isoform a {ECO:0000313|EMBL:JAB27556.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021710}  [Source:UniProtKB/TrEMBL;Acc:F6PHX6]
ENSCJAG00000013749	KNOWN_BY_PROJECTION	protein_coding	MFI2	chromosome:C_jacchus3.2.1:15:1:98464013:1	17939889	17966705	D	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 [Source:HGNC Symbol;Acc:HGNC:7037]
ENSCJAG00000038018	NOVEL	protein_coding	ENSCJAG00000038018	chromosome:C_jacchus3.2.1:5:1:159171411:1	57742701	57746411	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051035}  [Source:UniProtKB/TrEMBL;Acc:F7CIB4]
ENSCJAG00000013866	NOVEL	protein_coding	ENSCJAG00000013866	chromosome:C_jacchus3.2.1:15:1:98464013:1	17784433	17784883	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025478}  [Source:UniProtKB/TrEMBL;Acc:F7CD52]
ENSCJAG00000013542	NOVEL	protein_coding	ENSCJAG00000013542	chromosome:C_jacchus3.2.1:5:1:159171411:1	57739770	57740428	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046696}  [Source:UniProtKB/TrEMBL;Acc:F7IK39]
ENSCJAG00000014651	KNOWN_BY_PROJECTION	protein_coding	TBC1D30	chromosome:C_jacchus3.2.1:9:1:124281992:1	53895195	53972802	D	TBC1 domain family, member 30 [Source:HGNC Symbol;Acc:HGNC:29164]
ENSCJAG00000008088	NOVEL	protein_coding	ENSCJAG00000008088	chromosome:C_jacchus3.2.1:1:1:210400635:1	121432306	121444381	D	<no descrition>
ENSCJAG00000011011	NOVEL	protein_coding	ENSCJAG00000011011	chromosome:C_jacchus3.2.1:19:1:49578535:1	15604542	15644581	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047287}  [Source:UniProtKB/TrEMBL;Acc:F7IDI0]
ENSCJAG00000008471	KNOWN	protein_coding	EIF2AK3	chromosome:C_jacchus3.2.1:14:1:108792865:1	18969065	19041988	D	Eukaryotic translation initiation factor 2-alpha kinase 3 {ECO:0000313|EMBL:JAB05514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015692}  [Source:UniProtKB/TrEMBL;Acc:F7GGK0]
ENSCJAG00000011836	KNOWN	protein_coding	RIC3	chromosome:C_jacchus3.2.1:11:1:130397257:1	71494450	71563597	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021755}  [Source:UniProtKB/TrEMBL;Acc:F6TPK5]
ENSCJAG00000006321	KNOWN	protein_coding	PKD2	chromosome:C_jacchus3.2.1:3:1:190850796:1	105982993	106057735	R	Polycystin-2 {ECO:0000313|EMBL:JAB08811.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011724}  [Source:UniProtKB/TrEMBL;Acc:F7GM26]
ENSCJAG00000010398	KNOWN	protein_coding	ZGPAT	chromosome:C_jacchus3.2.1:5:1:159171411:1	57712840	57743130	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042418}; Zinc finger CCCH-type with G patch domain-containing protein isoform c {ECO:0000313|EMBL:JAB04068.1}  [Source:UniProtKB/TrEMBL;Acc:F7B996]
ENSCJAG00000011854	KNOWN_BY_PROJECTION	protein_coding	TUB	chromosome:C_jacchus3.2.1:11:1:130397257:1	71423695	71488154	D	tubby bipartite transcription factor [Source:HGNC Symbol;Acc:HGNC:12406]
ENSCJAG00000010986	KNOWN	protein_coding	TAF5L	chromosome:C_jacchus3.2.1:19:1:49578535:1	15558751	15580041	D	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform a {ECO:0000313|EMBL:JAB06553.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020312}  [Source:UniProtKB/TrEMBL;Acc:F7H6Y6]
ENSCJAG00000010382	KNOWN	protein_coding	ARFRP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	57701024	57713244	R	ADP-ribosylation factor-related protein 1 isoform a {ECO:0000313|EMBL:JAB02998.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044195}  [Source:UniProtKB/TrEMBL;Acc:F7FK59]
ENSCJAG00000011903	KNOWN_BY_PROJECTION	protein_coding	EIF3F	chromosome:C_jacchus3.2.1:11:1:130397257:1	71377565	71388043	D	eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:HGNC:3275]
ENSCJAG00000008523	KNOWN_BY_PROJECTION	protein_coding	RPIA	chromosome:C_jacchus3.2.1:14:1:108792865:1	18857223	18915463	R	ribose 5-phosphate isomerase A [Source:HGNC Symbol;Acc:HGNC:10297]
ENSCJAG00000008550	KNOWN_BY_PROJECTION	protein_coding	IGKV4-1	chromosome:C_jacchus3.2.1:14:1:108792865:1	18739117	18760043	R	immunoglobulin kappa variable 4-1 [Source:HGNC Symbol;Acc:HGNC:5834]
ENSCJAG00000013773	KNOWN	protein_coding	DLG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	17642811	17931015	D	Disks large homolog 1 isoform 1 {ECO:0000313|EMBL:JAB06435.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046482}  [Source:UniProtKB/TrEMBL;Acc:F7IK82]
ENSCJAG00000008551	KNOWN_BY_PROJECTION	protein_coding	IGKV5-2	chromosome:C_jacchus3.2.1:14:1:108792865:1	18710635	18711123	R	immunoglobulin kappa variable 5-2 [Source:HGNC Symbol;Acc:HGNC:5835]
ENSCJAG00000008545	NOVEL	protein_coding	ENSCJAG00000008545	chromosome:C_jacchus3.2.1:14:1:108792865:1	18518923	18519476	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051465}  [Source:UniProtKB/TrEMBL;Acc:F7AII0]
ENSCJAG00000013875	NOVEL	protein_coding	ENSCJAG00000013875	chromosome:C_jacchus3.2.1:14:1:108792865:1	18329892	18330612	D	<no descrition>
ENSCJAG00000014674	KNOWN	protein_coding	GNS	chromosome:C_jacchus3.2.1:9:1:124281992:1	53780382	53824010	R	N-acetylglucosamine-6-sulfatase {ECO:0000313|EMBL:JAB11111.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048439}  [Source:UniProtKB/TrEMBL;Acc:F7D7C5]
ENSCJAG00000010968	KNOWN	protein_coding	URB2	chromosome:C_jacchus3.2.1:19:1:49578535:1	15511539	15546796	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020262}  [Source:UniProtKB/TrEMBL;Acc:F7EE89]
ENSCJAG00000011939	KNOWN_BY_PROJECTION	protein_coding	NLRP10	chromosome:C_jacchus3.2.1:11:1:130397257:1	71293981	71358362	R	NLR family, pyrin domain containing 10 [Source:HGNC Symbol;Acc:HGNC:21464]
ENSCJAG00000034265	NOVEL	protein_coding	ENSCJAG00000034265	chromosome:C_jacchus3.2.1:19:1:49578535:1	15473254	15473773	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045502}  [Source:UniProtKB/TrEMBL;Acc:F6U1V8]
ENSCJAG00000013699	NOVEL	protein_coding	ENSCJAG00000013699	chromosome:C_jacchus3.2.1:11:1:130397257:1	71259769	71261015	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7AIW4]
ENSCJAG00000013695	NOVEL	protein_coding	ENSCJAG00000013695	chromosome:C_jacchus3.2.1:11:1:130397257:1	71193771	71195056	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025186}  [Source:UniProtKB/TrEMBL;Acc:F7B1S1]
ENSCJAG00000002677	NOVEL	protein_coding	ENSCJAG00000002677	chromosome:C_jacchus3.2.1:10:1:132174527:1	20759583	20766280	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004922}  [Source:UniProtKB/TrEMBL;Acc:F6UZF8]
ENSCJAG00000032827	NOVEL	protein_coding	ENSCJAG00000032827	chromosome:C_jacchus3.2.1:11:1:130397257:1	71178329	71179434	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7AZE9]
ENSCJAG00000010925	KNOWN_BY_PROJECTION	protein_coding	GALNT2	chromosome:C_jacchus3.2.1:19:1:49578535:1	14925618	15155901	R	polypeptide N-acetylgalactosaminyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:4124]
ENSCJAG00000020600	KNOWN_BY_PROJECTION	protein_coding	DENND4C	chromosome:C_jacchus3.2.1:1:1:210400635:1	121187711	121277550	R	DENN/MADD domain containing 4C [Source:HGNC Symbol;Acc:HGNC:26079]
ENSCJAG00000008534	NOVEL	protein_coding	ENSCJAG00000008534	chromosome:C_jacchus3.2.1:14:1:108792865:1	18160808	18811658	D	<no descrition>
ENSCJAG00000001720	KNOWN	protein_coding	ENSCJAG00000001720	chromosome:C_jacchus3.2.1:12:1:121768101:1	50660731	50703596	D	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F7DWG9]
ENSCJAG00000013882	NOVEL	protein_coding	ENSCJAG00000013882	chromosome:C_jacchus3.2.1:14:1:108792865:1	18147825	18437961	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040725}  [Source:UniProtKB/TrEMBL;Acc:F7HV84]
ENSCJAG00000010336	KNOWN_BY_PROJECTION	protein_coding	RTEL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	57666101	57704734	D	regulator of telomere elongation helicase 1 [Source:HGNC Symbol;Acc:HGNC:15888]
ENSCJAG00000014723	KNOWN	protein_coding	RASSF3	chromosome:C_jacchus3.2.1:9:1:124281992:1	53676022	53760604	D	Ras association domain-containing protein 3 {ECO:0000313|EMBL:JAB03237.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027110}  [Source:UniProtKB/TrEMBL;Acc:F7DFD6]
ENSCJAG00000010333	NOVEL	pseudogene	ENSCJAG00000010333	chromosome:C_jacchus3.2.1:5:1:159171411:1	57661486	57661823	R	<no descrition>
ENSCJAG00000013315	KNOWN	protein_coding	CYB5R2	chromosome:C_jacchus3.2.1:11:1:130397257:1	71109750	71117386	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024471}  [Source:UniProtKB/TrEMBL;Acc:F7DP54]
ENSCJAG00000001711	KNOWN_BY_PROJECTION	protein_coding	MSS51	chromosome:C_jacchus3.2.1:12:1:121768101:1	50640378	50651323	D	MSS51 mitochondrial translational activator [Source:HGNC Symbol;Acc:HGNC:21000]
ENSCJAG00000021566	KNOWN	protein_coding	BRD2	chromosome:C_jacchus3.2.1:4:1:171630274:1	33809347	33822617	D	Bromodomain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB05726.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040149}  [Source:UniProtKB/TrEMBL;Acc:F7I2Q1]
ENSCJAG00000020617	KNOWN	protein_coding	ACER2	chromosome:C_jacchus3.2.1:1:1:210400635:1	121098157	121142093	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038322}  [Source:UniProtKB/TrEMBL;Acc:F7IBP9]
ENSCJAG00000010324	KNOWN_BY_PROJECTION	protein_coding	STMN3	chromosome:C_jacchus3.2.1:5:1:159171411:1	57645846	57659796	R	stathmin-like 3 [Source:HGNC Symbol;Acc:HGNC:15926]
ENSCJAG00000020612	KNOWN_BY_PROJECTION	protein_coding	RPS6	chromosome:C_jacchus3.2.1:1:1:210400635:1	121085204	121184360	D	ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
ENSCJAG00000013335	KNOWN_BY_PROJECTION	protein_coding	PPFIBP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	70959786	71104087	D	PTPRF interacting protein, binding protein 2 (liprin beta 2) [Source:HGNC Symbol;Acc:HGNC:9250]
ENSCJAG00000000322	KNOWN_BY_PROJECTION	protein_coding	SYT14	chromosome:C_jacchus3.2.1:19:1:49578535:1	14569387	14807003	R	synaptotagmin XIV [Source:HGNC Symbol;Acc:HGNC:23143]
ENSCJAG00000013867	NOVEL	protein_coding	ENSCJAG00000013867	chromosome:C_jacchus3.2.1:15:1:98464013:1	17635251	17635787	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025482}  [Source:UniProtKB/TrEMBL;Acc:F7BYL3]
ENSCJAG00000013362	KNOWN_BY_PROJECTION	protein_coding	OLFML1	chromosome:C_jacchus3.2.1:11:1:130397257:1	70932197	70956778	D	olfactomedin-like 1 [Source:HGNC Symbol;Acc:HGNC:24473]
ENSCJAG00000013869	KNOWN	protein_coding	BDH1	chromosome:C_jacchus3.2.1:15:1:98464013:1	17393131	17434578	D	D-beta-hydroxybutyrate dehydrogenase, mitochondrial {ECO:0000313|EMBL:JAB01945.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025485}  [Source:UniProtKB/TrEMBL;Acc:F7BYJ9]
ENSCJAG00000012762	KNOWN_BY_PROJECTION	protein_coding	FAM154A	chromosome:C_jacchus3.2.1:1:1:210400635:1	120883674	120995510	R	family with sequence similarity 154, member A [Source:HGNC Symbol;Acc:HGNC:28566]
ENSCJAG00000013873	KNOWN_BY_PROJECTION	protein_coding	APOD	chromosome:C_jacchus3.2.1:15:1:98464013:1	17278384	17294684	R	apolipoprotein D [Source:HGNC Symbol;Acc:HGNC:612]
ENSCJAG00000013889	KNOWN_BY_PROJECTION	protein_coding	PAX8	chromosome:C_jacchus3.2.1:14:1:108792865:1	17910041	17976533	R	paired box 8 [Source:HGNC Symbol;Acc:HGNC:8622]
ENSCJAG00000006370	KNOWN	protein_coding	ABCG2	chromosome:C_jacchus3.2.1:3:1:190850796:1	105919501	105973535	D	ATP-binding cassette sub-family G member 2 isoform 1 {ECO:0000313|EMBL:JAB03594.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042824}  [Source:UniProtKB/TrEMBL;Acc:F7B5F8]
ENSCJAG00000013762	KNOWN	protein_coding	SYT9	chromosome:C_jacchus3.2.1:11:1:130397257:1	70691516	70902699	D	Synaptotagmin-9 {ECO:0000313|EMBL:JAB51940.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049430}  [Source:UniProtKB/TrEMBL;Acc:F7BYV9]
ENSCJAG00000013876	KNOWN	protein_coding	PPP1R2	chromosome:C_jacchus3.2.1:15:1:98464013:1	17224156	17251026	R	Protein phosphatase inhibitor 2 {ECO:0000313|EMBL:JAB14535.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025524}  [Source:UniProtKB/TrEMBL;Acc:F6ZEW2]
ENSCJAG00000000321	NOVEL	pseudogene	ENSCJAG00000000321	chromosome:C_jacchus3.2.1:19:1:49578535:1	14499930	14500224	D	<no descrition>
ENSCJAG00000013954	NOVEL	pseudogene	ENSCJAG00000013954	chromosome:C_jacchus3.2.1:15:1:98464013:1	17068571	17069081	R	<no descrition>
ENSCJAG00000021559	KNOWN_BY_PROJECTION	protein_coding	HLA-DMA	chromosome:C_jacchus3.2.1:4:1:171630274:1	33783535	33788044	R	major histocompatibility complex, class II, DM alpha [Source:HGNC Symbol;Acc:HGNC:4934]
ENSCJAG00000010283	KNOWN_BY_PROJECTION	protein_coding	GMEB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	57591659	57628781	R	glucocorticoid modulatory element binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4371]
ENSCJAG00000010279	NOVEL	protein_coding	ENSCJAG00000010279	chromosome:C_jacchus3.2.1:5:1:159171411:1	57569961	57571153	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018931}  [Source:UniProtKB/TrEMBL;Acc:F7H0C1]
ENSCJAG00000032318	NOVEL	protein_coding	ENSCJAG00000032318	chromosome:C_jacchus3.2.1:1:1:210400635:1	120707750	120865608	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023377}  [Source:UniProtKB/TrEMBL;Acc:F7HZE5]
ENSCJAG00000000316	KNOWN	protein_coding	SERTAD4	chromosome:C_jacchus3.2.1:19:1:49578535:1	14490901	14500930	R	SERTA domain-containing protein 4 {ECO:0000313|EMBL:JAB12555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000529}  [Source:UniProtKB/TrEMBL;Acc:F7H857]
ENSCJAG00000013912	KNOWN_BY_PROJECTION	protein_coding	PSD4	chromosome:C_jacchus3.2.1:14:1:108792865:1	17874597	17895143	D	pleckstrin and Sec7 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:19096]
ENSCJAG00000010275	NOVEL	protein_coding	ENSCJAG00000010275	chromosome:C_jacchus3.2.1:5:1:159171411:1	57559515	57562602	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018924}  [Source:UniProtKB/TrEMBL;Acc:F7H0F2]
ENSCJAG00000013894	KNOWN_BY_PROJECTION	protein_coding	ACAP2	chromosome:C_jacchus3.2.1:15:1:98464013:1	17007153	17175497	R	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16469]
ENSCJAG00000010272	KNOWN_BY_PROJECTION	protein_coding	C20orf195	chromosome:C_jacchus3.2.1:5:1:159171411:1	57552698	57556063	D	chromosome 20 open reading frame 195 [Source:HGNC Symbol;Acc:HGNC:28764]
ENSCJAG00000000310	KNOWN_BY_PROJECTION	protein_coding	HHAT	chromosome:C_jacchus3.2.1:19:1:49578535:1	14030165	14401993	R	hedgehog acyltransferase [Source:HGNC Symbol;Acc:HGNC:18270]
ENSCJAG00000021558	NOVEL	protein_coding	ENSCJAG00000021558	chromosome:C_jacchus3.2.1:4:1:171630274:1	33767007	33775633	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040135}  [Source:UniProtKB/TrEMBL;Acc:F7I2S2]
ENSCJAG00000033210	NOVEL	protein_coding	ENSCJAG00000033210	chromosome:C_jacchus3.2.1:19:1:49578535:1	13694845	13695631	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052440}  [Source:UniProtKB/TrEMBL;Acc:F7I4U1]
ENSCJAG00000013765	KNOWN_BY_PROJECTION	protein_coding	NLRP14	chromosome:C_jacchus3.2.1:11:1:130397257:1	70416437	70473794	D	NLR family, pyrin domain containing 14 [Source:HGNC Symbol;Acc:HGNC:22939]
ENSCJAG00000036855	KNOWN_BY_PROJECTION	protein_coding	SLC2A4RG	chromosome:C_jacchus3.2.1:5:1:159171411:1	57547155	57752100	D	SLC2A4 regulator [Source:HGNC Symbol;Acc:HGNC:15930]
ENSCJAG00000013957	KNOWN	protein_coding	XXYLT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	16796785	16997785	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025651}; Xyloside xylosyltransferase 1 {ECO:0000313|EMBL:JAB03337.1}  [Source:UniProtKB/TrEMBL;Acc:F7AXT3]
ENSCJAG00000013930	KNOWN_BY_PROJECTION	protein_coding	IL1RN	chromosome:C_jacchus3.2.1:14:1:108792865:1	17822520	17827766	D	interleukin 1 receptor antagonist [Source:HGNC Symbol;Acc:HGNC:6000]
ENSCJAG00000013790	KNOWN	protein_coding	ZNF214	chromosome:C_jacchus3.2.1:11:1:130397257:1	70370327	70416281	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025353}; Zinc finger protein 214 {ECO:0000313|EMBL:JAB40567.1}  [Source:UniProtKB/TrEMBL;Acc:F7AGN9]
ENSCJAG00000021556	NOVEL	pseudogene	ENSCJAG00000021556	chromosome:C_jacchus3.2.1:4:1:171630274:1	33712080	33712690	R	<no descrition>
ENSCJAG00000001651	KNOWN	protein_coding	PPP3CB	chromosome:C_jacchus3.2.1:12:1:121768101:1	50576588	50636836	D	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F7GI67]
ENSCJAG00000019498	NOVEL	protein_coding	ENSCJAG00000019498	chromosome:C_jacchus3.2.1:15:1:98464013:1	16501198	16502913	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036208}  [Source:UniProtKB/TrEMBL;Acc:F7GEQ0]
ENSCJAG00000013941	KNOWN_BY_PROJECTION	protein_coding	IL1F10	chromosome:C_jacchus3.2.1:14:1:108792865:1	17764814	17771801	D	interleukin 1 family, member 10 (theta) [Source:HGNC Symbol;Acc:HGNC:15552]
ENSCJAG00000033800	NOVEL	pseudogene	ENSCJAG00000033800	chromosome:C_jacchus3.2.1:15:1:98464013:1	16415072	16416332	D	<no descrition>
ENSCJAG00000013794	KNOWN_BY_PROJECTION	protein_coding	ZNF215	chromosome:C_jacchus3.2.1:11:1:130397257:1	70329427	70361048	D	zinc finger protein 215 [Source:HGNC Symbol;Acc:HGNC:13007]
ENSCJAG00000010253	KNOWN_BY_PROJECTION	protein_coding	SRMS	chromosome:C_jacchus3.2.1:5:1:159171411:1	57540786	57547391	R	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites [Source:HGNC Symbol;Acc:HGNC:11298]
ENSCJAG00000036307	KNOWN_BY_PROJECTION	protein_coding	IL36RN	chromosome:C_jacchus3.2.1:14:1:108792865:1	17755748	17759271	D	interleukin 36 receptor antagonist [Source:HGNC Symbol;Acc:HGNC:15561]
ENSCJAG00000013951	KNOWN_BY_PROJECTION	protein_coding	IL36B	chromosome:C_jacchus3.2.1:14:1:108792865:1	17713493	17714698	R	interleukin 36, beta [Source:HGNC Symbol;Acc:HGNC:15564]
ENSCJAG00000013805	KNOWN_BY_PROJECTION	protein_coding	OR2D2	chromosome:C_jacchus3.2.1:11:1:130397257:1	70299492	70301034	R	olfactory receptor, family 2, subfamily D, member 2 [Source:HGNC Symbol;Acc:HGNC:8244]
ENSCJAG00000013959	KNOWN_BY_PROJECTION	protein_coding	IL36G	chromosome:C_jacchus3.2.1:14:1:108792865:1	17658678	17665648	D	interleukin 36, gamma [Source:HGNC Symbol;Acc:HGNC:15741]
ENSCJAG00000000282	KNOWN	protein_coding	RCOR3	chromosome:C_jacchus3.2.1:19:1:49578535:1	13392054	13452209	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000510}  [Source:UniProtKB/TrEMBL;Acc:F7H887]
ENSCJAG00000033014	NOVEL	protein_coding	ENSCJAG00000033014	chromosome:C_jacchus3.2.1:14:1:108792865:1	17584606	17592441	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046072}  [Source:UniProtKB/TrEMBL;Acc:F6ZAY1]
ENSCJAG00000013962	KNOWN	protein_coding	LSG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	16359320	16397269	R	Large subunit GTPase 1 homolog {ECO:0000313|EMBL:JAB06167.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025704}  [Source:UniProtKB/TrEMBL;Acc:F6XRA3]
ENSCJAG00000012733	NOVEL	protein_coding	ENSCJAG00000012733	chromosome:C_jacchus3.2.1:1:1:210400635:1	120418679	120652526	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044676}  [Source:UniProtKB/TrEMBL;Acc:F7HBN4]
ENSCJAG00000016340	KNOWN	protein_coding	IL1B	chromosome:C_jacchus3.2.1:14:1:108792865:1	17530452	17537495	R	Interleukin-1 beta proprotein {ECO:0000313|EMBL:JAB35514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030094}  [Source:UniProtKB/TrEMBL;Acc:F6RH14]
ENSCJAG00000016365	NOVEL	protein_coding	ENSCJAG00000016365	chromosome:C_jacchus3.2.1:14:1:108792865:1	17497231	17500300	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030113}  [Source:UniProtKB/TrEMBL;Acc:F6WCM3]
ENSCJAG00000014734	KNOWN	protein_coding	TBK1	chromosome:C_jacchus3.2.1:9:1:124281992:1	53494659	53554372	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027174}  [Source:UniProtKB/TrEMBL;Acc:F7H5A2]
ENSCJAG00000000277	NOVEL	pseudogene	ENSCJAG00000000277	chromosome:C_jacchus3.2.1:19:1:49578535:1	13380966	13381381	R	<no descrition>
ENSCJAG00000013808	NOVEL	protein_coding	ENSCJAG00000013808	chromosome:C_jacchus3.2.1:11:1:130397257:1	70240416	70264826	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6WL29]
ENSCJAG00000010243	KNOWN_BY_PROJECTION	protein_coding	PTK6	chromosome:C_jacchus3.2.1:5:1:159171411:1	57528724	57536658	R	protein tyrosine kinase 6 [Source:HGNC Symbol;Acc:HGNC:9617]
ENSCJAG00000013820	NOVEL	pseudogene	ENSCJAG00000013820	chromosome:C_jacchus3.2.1:11:1:130397257:1	70172196	70173564	R	<no descrition>
ENSCJAG00000013987	KNOWN_BY_PROJECTION	protein_coding	TMEM44	chromosome:C_jacchus3.2.1:15:1:98464013:1	16304959	16353865	R	transmembrane protein 44 [Source:HGNC Symbol;Acc:HGNC:25120]
ENSCJAG00000033586	NOVEL	protein_coding	ENSCJAG00000033586	chromosome:C_jacchus3.2.1:11:1:130397257:1	70097167	70098221	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043967}  [Source:UniProtKB/TrEMBL;Acc:F7IP19]
ENSCJAG00000010241	NOVEL	protein_coding	ENSCJAG00000010241	chromosome:C_jacchus3.2.1:5:1:159171411:1	57507632	57508186	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018861}  [Source:UniProtKB/TrEMBL;Acc:F7HG51]
ENSCJAG00000013825	KNOWN_BY_PROJECTION	protein_coding	MRPL17	chromosome:C_jacchus3.2.1:11:1:130397257:1	70067168	70069493	R	mitochondrial ribosomal protein L17 [Source:HGNC Symbol;Acc:HGNC:14053]
ENSCJAG00000013993	NOVEL	protein_coding	ENSCJAG00000013993	chromosome:C_jacchus3.2.1:15:1:98464013:1	16291420	16292955	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052470}  [Source:UniProtKB/TrEMBL;Acc:F7I044]
ENSCJAG00000034720	NOVEL	pseudogene	ENSCJAG00000034720	chromosome:C_jacchus3.2.1:15:1:98464013:1	16162860	16164608	D	<no descrition>
ENSCJAG00000013828	KNOWN_BY_PROJECTION	protein_coding	DCHS1	chromosome:C_jacchus3.2.1:11:1:130397257:1	70005824	70026112	R	dachsous cadherin-related 1 [Source:HGNC Symbol;Acc:HGNC:13681]
ENSCJAG00000006428	KNOWN	protein_coding	PPM1K	chromosome:C_jacchus3.2.1:3:1:190850796:1	105804701	105829713	D	Protein phosphatase 1K, mitochondrial {ECO:0000313|EMBL:JAB03058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011859}  [Source:UniProtKB/TrEMBL;Acc:F7HI43]
ENSCJAG00000000257	KNOWN	protein_coding	TRAF5	chromosome:C_jacchus3.2.1:19:1:49578535:1	13326476	13357460	R	TNF receptor-associated factor 5 {ECO:0000313|EMBL:JAB09959.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000450}  [Source:UniProtKB/TrEMBL;Acc:F7FNV9]
ENSCJAG00000002715	KNOWN_BY_PROJECTION	protein_coding	PPIP5K1	chromosome:C_jacchus3.2.1:10:1:132174527:1	20701064	20756750	R	diphosphoinositol pentakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:29023]
ENSCJAG00000013996	KNOWN_BY_PROJECTION	protein_coding	ATP13A3	chromosome:C_jacchus3.2.1:15:1:98464013:1	16087113	16148588	R	ATPase type 13A3 [Source:HGNC Symbol;Acc:HGNC:24113]
ENSCJAG00000014036	KNOWN_BY_PROJECTION	protein_coding	ZCCHC24	chromosome:C_jacchus3.2.1:15:1:98464013:1	16079057	16079756	R	zinc finger, CCHC domain containing 24 [Source:HGNC Symbol;Acc:HGNC:26911]
ENSCJAG00000012694	KNOWN	protein_coding	SH3GL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	119533318	119745182	D	Endophilin-A1 {ECO:0000313|EMBL:JAB09479.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023303}  [Source:UniProtKB/TrEMBL;Acc:F7IB79]
ENSCJAG00000014038	KNOWN_BY_PROJECTION	protein_coding	GP5	chromosome:C_jacchus3.2.1:15:1:98464013:1	16076480	16078162	R	glycoprotein V (platelet) [Source:HGNC Symbol;Acc:HGNC:4443]
ENSCJAG00000001615	KNOWN	protein_coding	USP54	chromosome:C_jacchus3.2.1:12:1:121768101:1	50502952	50574339	D	Inactive ubiquitin carboxyl-terminal hydrolase 54 {ECO:0000313|EMBL:JAB05539.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002929}  [Source:UniProtKB/TrEMBL;Acc:F7HXB1]
ENSCJAG00000014042	KNOWN_BY_PROJECTION	protein_coding	LRRC15	chromosome:C_jacchus3.2.1:15:1:98464013:1	16041511	16053975	R	leucine rich repeat containing 15 [Source:HGNC Symbol;Acc:HGNC:20818]
ENSCJAG00000010227	KNOWN_BY_PROJECTION	protein_coding	EEF1A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	57471964	57483985	R	eukaryotic translation elongation factor 1 alpha 2 [Source:HGNC Symbol;Acc:HGNC:3192]
ENSCJAG00000014044	KNOWN_BY_PROJECTION	protein_coding	HES1	chromosome:C_jacchus3.2.1:15:1:98464013:1	15796406	15799364	D	hes family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:5192]
ENSCJAG00000016360	NOVEL	protein_coding	ENSCJAG00000016360	chromosome:C_jacchus3.2.1:14:1:108792865:1	17495342	17501732	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030103}  [Source:UniProtKB/TrEMBL;Acc:F6WCU8]
ENSCJAG00000015904	NOVEL	protein_coding	ENSCJAG00000015904	chromosome:C_jacchus3.2.1:19:1:49578535:1	13263747	13292494	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029290}  [Source:UniProtKB/TrEMBL;Acc:F7IM01]
ENSCJAG00000016396	NOVEL	protein_coding	ENSCJAG00000016396	chromosome:C_jacchus3.2.1:14:1:108792865:1	17445798	17447225	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052155}  [Source:UniProtKB/TrEMBL;Acc:F7I0B5]
ENSCJAG00000016368	KNOWN	protein_coding	IL1A	chromosome:C_jacchus3.2.1:14:1:108792865:1	17462547	17478117	R	Interleukin-1 alpha proprotein {ECO:0000313|EMBL:JAB04921.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030146}  [Source:UniProtKB/TrEMBL;Acc:F6VT34]
ENSCJAG00000012600	KNOWN_BY_PROJECTION	protein_coding	CNTLN	chromosome:C_jacchus3.2.1:1:1:210400635:1	119127224	119455432	D	centlein, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:23432]
ENSCJAG00000002767	KNOWN_BY_PROJECTION	protein_coding	MAP1A	chromosome:C_jacchus3.2.1:10:1:132174527:1	20675988	20698558	D	microtubule-associated protein 1A [Source:HGNC Symbol;Acc:HGNC:6835]
ENSCJAG00000014052	KNOWN_BY_PROJECTION	protein_coding	OPA1	chromosome:C_jacchus3.2.1:15:1:98464013:1	15245835	15343792	D	optic atrophy 1 (autosomal dominant) [Source:HGNC Symbol;Acc:HGNC:8140]
ENSCJAG00000015901	NOVEL	protein_coding	ENSCJAG00000015901	chromosome:C_jacchus3.2.1:19:1:49578535:1	13242863	13254126	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029264}  [Source:UniProtKB/TrEMBL;Acc:F7IRM8]
ENSCJAG00000015898	KNOWN_BY_PROJECTION	protein_coding	RD3	chromosome:C_jacchus3.2.1:19:1:49578535:1	13219934	13234721	D	retinal degeneration 3 [Source:HGNC Symbol;Acc:HGNC:19689]
ENSCJAG00000016397	KNOWN_BY_PROJECTION	protein_coding	CKAP2L	chromosome:C_jacchus3.2.1:14:1:108792865:1	17398181	17439926	R	cytoskeleton associated protein 2-like [Source:HGNC Symbol;Acc:HGNC:26877]
ENSCJAG00000006441	KNOWN_BY_PROJECTION	protein_coding	HERC6	chromosome:C_jacchus3.2.1:3:1:190850796:1	105636629	105720011	R	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]
ENSCJAG00000010184	KNOWN_BY_PROJECTION	protein_coding	KCNQ2	chromosome:C_jacchus3.2.1:5:1:159171411:1	57381857	57429697	R	potassium channel, voltage gated KQT-like subfamily Q, member 2 [Source:HGNC Symbol;Acc:HGNC:6296]
ENSCJAG00000031772	NOVEL	pseudogene	ENSCJAG00000031772	chromosome:C_jacchus3.2.1:14:1:108792865:1	17331830	17332367	R	<no descrition>
ENSCJAG00000012578	KNOWN	protein_coding	BNC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	118364731	118817207	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023052}; Zinc finger protein basonuclin-2 {ECO:0000313|EMBL:JAB06119.1}  [Source:UniProtKB/TrEMBL;Acc:F7IDP4]
ENSCJAG00000015892	KNOWN	protein_coding	SLC30A1	chromosome:C_jacchus3.2.1:19:1:49578535:1	13123626	13126488	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029257}  [Source:UniProtKB/TrEMBL;Acc:F7IRR0]
ENSCJAG00000032216	KNOWN_BY_PROJECTION	protein_coding	C9orf92	chromosome:C_jacchus3.2.1:1:1:210400635:1	118152153	118164188	R	chromosome 9 open reading frame 92 [Source:HGNC Symbol;Acc:HGNC:19054]
ENSCJAG00000021553	KNOWN	protein_coding	PSMB9	chromosome:C_jacchus3.2.1:4:1:171630274:1	33683792	33689073	D	Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}  [Source:UniProtKB/TrEMBL;Acc:F7I2S5]
ENSCJAG00000012574	NOVEL	protein_coding	ENSCJAG00000012574	chromosome:C_jacchus3.2.1:1:1:210400635:1	117869141	117872595	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023007}  [Source:UniProtKB/TrEMBL;Acc:F7IKR3]
ENSCJAG00000012567	NOVEL	protein_coding	ENSCJAG00000012567	chromosome:C_jacchus3.2.1:1:1:210400635:1	117750643	117897075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022998}  [Source:UniProtKB/TrEMBL;Acc:F7I3I9]
ENSCJAG00000010168	KNOWN	protein_coding	CHRNA4	chromosome:C_jacchus3.2.1:5:1:159171411:1	57324558	57335039	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018726}  [Source:UniProtKB/TrEMBL;Acc:F7EPW1]
ENSCJAG00000037758	NOVEL	protein_coding	ENSCJAG00000037758	chromosome:C_jacchus3.2.1:5:1:159171411:1	57303177	57306994	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044483}  [Source:UniProtKB/TrEMBL;Acc:F7H6S7]
ENSCJAG00000016414	KNOWN	protein_coding	SLC20A1	chromosome:C_jacchus3.2.1:14:1:108792865:1	17307584	17322661	D	Sodium-dependent phosphate transporter 1 {ECO:0000313|EMBL:JAB05293.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030207}  [Source:UniProtKB/TrEMBL;Acc:F7BSK6]
ENSCJAG00000016421	KNOWN_BY_PROJECTION	protein_coding	CHCHD5	chromosome:C_jacchus3.2.1:14:1:108792865:1	17254750	17259354	D	coiled-coil-helix-coiled-coil-helix domain containing 5 [Source:HGNC Symbol;Acc:HGNC:17840]
ENSCJAG00000014072	KNOWN_BY_PROJECTION	protein_coding	ATP13A4	chromosome:C_jacchus3.2.1:15:1:98464013:1	15037274	15211422	R	ATPase type 13A4 [Source:HGNC Symbol;Acc:HGNC:25422]
ENSCJAG00000015883	KNOWN	protein_coding	NEK2	chromosome:C_jacchus3.2.1:19:1:49578535:1	13027313	13040379	D	Serine/threonine-protein kinase Nek2 isoform 1 {ECO:0000313|EMBL:JAB27817.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047026}  [Source:UniProtKB/TrEMBL;Acc:F7IBD3]
ENSCJAG00000014762	KNOWN	protein_coding	XPOT	chromosome:C_jacchus3.2.1:9:1:124281992:1	53443297	53491102	D	Exportin-T {ECO:0000313|EMBL:JAB05122.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027264}  [Source:UniProtKB/TrEMBL;Acc:F7FFA1]
ENSCJAG00000015870	KNOWN	protein_coding	LPGAT1	chromosome:C_jacchus3.2.1:19:1:49578535:1	12870228	12965419	D	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1 {ECO:0000313|EMBL:JAB01652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029234}  [Source:UniProtKB/TrEMBL;Acc:F7HSF7]
ENSCJAG00000013870	KNOWN	protein_coding	TPP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69996993	70003710	R	Tripeptidyl-peptidase 1 preproprotein {ECO:0000313|EMBL:JAB02131.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025594}  [Source:UniProtKB/TrEMBL;Acc:F6VZ09]
ENSCJAG00000010078	KNOWN_BY_PROJECTION	protein_coding	ARFGAP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	57249536	57266760	D	ADP-ribosylation factor GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:15852]
ENSCJAG00000001592	KNOWN_BY_PROJECTION	protein_coding	MYOZ1	chromosome:C_jacchus3.2.1:12:1:121768101:1	50421970	50433807	D	myozenin 1 [Source:HGNC Symbol;Acc:HGNC:13752]
ENSCJAG00000021552	KNOWN_BY_PROJECTION	protein_coding	TAP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	33675363	33683575	R	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) [Source:HGNC Symbol;Acc:HGNC:43]
ENSCJAG00000014806	NOVEL	pseudogene	ENSCJAG00000014806	chromosome:C_jacchus3.2.1:9:1:124281992:1	53439557	53440835	R	<no descrition>
ENSCJAG00000001574	KNOWN_BY_PROJECTION	protein_coding	SYNPO2L	chromosome:C_jacchus3.2.1:12:1:121768101:1	50405293	50416920	D	synaptopodin 2-like [Source:HGNC Symbol;Acc:HGNC:23532]
ENSCJAG00000014810	KNOWN_BY_PROJECTION	protein_coding	C12orf56	chromosome:C_jacchus3.2.1:9:1:124281992:1	53325097	53430948	R	chromosome 12 open reading frame 56 [Source:HGNC Symbol;Acc:HGNC:26967]
ENSCJAG00000010056	KNOWN	protein_coding	YTHDF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	57198043	57216021	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018479}; YTH domain family protein 1 {ECO:0000313|EMBL:JAB05647.1}  [Source:UniProtKB/TrEMBL;Acc:F7G8J5]
ENSCJAG00000010053	KNOWN_BY_PROJECTION	protein_coding	BHLHE23	chromosome:C_jacchus3.2.1:5:1:159171411:1	57016603	57093166	R	basic helix-loop-helix family, member e23 [Source:HGNC Symbol;Acc:HGNC:16093]
ENSCJAG00000010007	KNOWN_BY_PROJECTION	protein_coding	GID8	chromosome:C_jacchus3.2.1:5:1:159171411:1	56949088	56951942	D	GID complex subunit 8 [Source:HGNC Symbol;Acc:HGNC:15857]
ENSCJAG00000009991	KNOWN	protein_coding	DIDO1	chromosome:C_jacchus3.2.1:5:1:159171411:1	56909296	56917616	R	Death-inducer obliterator 1 isoform a {ECO:0000313|EMBL:JAB05491.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018380}  [Source:UniProtKB/TrEMBL;Acc:F7HGY3]
ENSCJAG00000009980	KNOWN_BY_PROJECTION	protein_coding	TCFL5	chromosome:C_jacchus3.2.1:5:1:159171411:1	56870854	56884551	R	transcription factor-like 5 (basic helix-loop-helix) [Source:HGNC Symbol;Acc:HGNC:11646]
ENSCJAG00000014895	KNOWN	protein_coding	C12ORF66	chromosome:C_jacchus3.2.1:9:1:124281992:1	53261111	53286272	R	UPF0536 protein C12orf66 {ECO:0000313|EMBL:JAB05864.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027433}  [Source:UniProtKB/TrEMBL;Acc:F7GPC8]
ENSCJAG00000012538	NOVEL	protein_coding	ENSCJAG00000012538	chromosome:C_jacchus3.2.1:1:1:210400635:1	117450237	117676067	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022960}  [Source:UniProtKB/TrEMBL;Acc:F7I8A0]
ENSCJAG00000014131	KNOWN_BY_PROJECTION	protein_coding	ATP13A5	chromosome:C_jacchus3.2.1:15:1:98464013:1	14904919	15017241	R	ATPase type 13A5 [Source:HGNC Symbol;Acc:HGNC:31789]
ENSCJAG00000014842	KNOWN_BY_PROJECTION	protein_coding	SRGAP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	52888293	53228069	D	SLIT-ROBO Rho GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17382]
ENSCJAG00000013950	KNOWN_BY_PROJECTION	protein_coding	TAF10	chromosome:C_jacchus3.2.1:11:1:130397257:1	69995078	69996475	R	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa [Source:HGNC Symbol;Acc:HGNC:11543]
ENSCJAG00000014159	NOVEL	protein_coding	ENSCJAG00000014159	chromosome:C_jacchus3.2.1:15:1:98464013:1	14892970	14900959	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026027}  [Source:UniProtKB/TrEMBL;Acc:F7HXY8]
ENSCJAG00000014165	KNOWN	protein_coding	FGF12	chromosome:C_jacchus3.2.1:15:1:98464013:1	13776683	14036582	R	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F7HQZ3]
ENSCJAG00000014162	KNOWN	protein_coding	MB21D2	chromosome:C_jacchus3.2.1:15:1:98464013:1	14435497	14561717	R	Protein MB21D2 {ECO:0000313|EMBL:JAB09332.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026037}  [Source:UniProtKB/TrEMBL;Acc:F7HXU5]
ENSCJAG00000015814	KNOWN	protein_coding	INTS7	chromosome:C_jacchus3.2.1:19:1:49578535:1	12665881	12760590	D	Integrator complex subunit 7 isoform 1 {ECO:0000313|EMBL:JAB02933.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029212}  [Source:UniProtKB/TrEMBL;Acc:F7HYG6]
ENSCJAG00000016433	KNOWN_BY_PROJECTION	protein_coding	POLR1B	chromosome:C_jacchus3.2.1:14:1:108792865:1	17207312	17247903	D	polymerase (RNA) I polypeptide B, 128kDa [Source:HGNC Symbol;Acc:HGNC:20454]
ENSCJAG00000022228	NOVEL	protein_coding	ENSCJAG00000022228	chromosome:C_jacchus3.2.1:15:1:98464013:1	13593581	13594870	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040880}  [Source:UniProtKB/TrEMBL;Acc:F7I968]
ENSCJAG00000014177	KNOWN_BY_PROJECTION	protein_coding	CCDC50	chromosome:C_jacchus3.2.1:15:1:98464013:1	12973140	13042851	D	coiled-coil domain containing 50 [Source:HGNC Symbol;Acc:HGNC:18111]
ENSCJAG00000009955	KNOWN_BY_PROJECTION	protein_coding	BIRC7	chromosome:C_jacchus3.2.1:5:1:159171411:1	56846585	57227344	D	baculoviral IAP repeat containing 7 [Source:HGNC Symbol;Acc:HGNC:13702]
ENSCJAG00000012471	KNOWN	protein_coding	PSIP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	117339192	117387364	R	PC4 and SFRS1-interacting protein isoform 2 {ECO:0000313|EMBL:JAB19353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022889}  [Source:UniProtKB/TrEMBL;Acc:F7IPN9]
ENSCJAG00000016475	KNOWN	protein_coding	TTL	chromosome:C_jacchus3.2.1:14:1:108792865:1	17163609	17196901	D	Tubulin--tyrosine ligase {ECO:0000313|EMBL:JAB12657.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030320}  [Source:UniProtKB/TrEMBL;Acc:F6XJ55]
ENSCJAG00000006474	KNOWN	protein_coding	HERC5	chromosome:C_jacchus3.2.1:3:1:190850796:1	105572187	105627499	R	E3 ISG15--protein ligase HERC5 {ECO:0000313|EMBL:JAB10301.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012014}  [Source:UniProtKB/TrEMBL;Acc:F7H9D6]
ENSCJAG00000015774	KNOWN_BY_PROJECTION	protein_coding	DTL	chromosome:C_jacchus3.2.1:19:1:49578535:1	12604172	12665741	R	denticleless E3 ubiquitin protein ligase homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:30288]
ENSCJAG00000014188	KNOWN_BY_PROJECTION	protein_coding	OSTN	chromosome:C_jacchus3.2.1:15:1:98464013:1	12869621	12895515	D	osteocrin [Source:HGNC Symbol;Acc:HGNC:29961]
ENSCJAG00000014190	KNOWN_BY_PROJECTION	protein_coding	GMNC	chromosome:C_jacchus3.2.1:15:1:98464013:1	12511223	12522519	R	geminin coiled-coil domain containing [Source:HGNC Symbol;Acc:HGNC:40049]
ENSCJAG00000015772	NOVEL	protein_coding	ENSCJAG00000015772	chromosome:C_jacchus3.2.1:19:1:49578535:1	12461136	12462181	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029030}  [Source:UniProtKB/TrEMBL;Acc:F7HSQ5]
ENSCJAG00000014214	NOVEL	protein_coding	ENSCJAG00000014214	chromosome:C_jacchus3.2.1:15:1:98464013:1	12251017	12252432	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026135}  [Source:UniProtKB/TrEMBL;Acc:F7IE66]
ENSCJAG00000016479	KNOWN_BY_PROJECTION	protein_coding	ZC3H6	chromosome:C_jacchus3.2.1:14:1:108792865:1	16961046	17020531	D	zinc finger CCCH-type containing 6 [Source:HGNC Symbol;Acc:HGNC:24762]
ENSCJAG00000006517	KNOWN	protein_coding	PYURF	chromosome:C_jacchus3.2.1:3:1:190850796:1	105550139	105552949	D	Protein preY, mitochondrial {ECO:0000313|EMBL:JAB08792.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012025}  [Source:UniProtKB/TrEMBL;Acc:F7H965]
ENSCJAG00000006620	KNOWN_BY_PROJECTION	protein_coding	NAP1L5	chromosome:C_jacchus3.2.1:3:1:190850796:1	105370740	105371288	D	nucleosome assembly protein 1-like 5 [Source:HGNC Symbol;Acc:HGNC:19968]
ENSCJAG00000016492	KNOWN	protein_coding	ZC3H8	chromosome:C_jacchus3.2.1:14:1:108792865:1	16898582	16942938	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030359}; Zinc finger CCCH domain-containing protein 8 {ECO:0000313|EMBL:JAB16844.1}  [Source:UniProtKB/TrEMBL;Acc:F6WB87]
ENSCJAG00000009909	KNOWN_BY_PROJECTION	protein_coding	COL9A3	chromosome:C_jacchus3.2.1:5:1:159171411:1	56841202	56869724	D	collagen, type IX, alpha 3 [Source:HGNC Symbol;Acc:HGNC:2219]
ENSCJAG00000016508	KNOWN_BY_PROJECTION	protein_coding	FBLN7	chromosome:C_jacchus3.2.1:14:1:108792865:1	16818981	16870230	D	fibulin 7 [Source:HGNC Symbol;Acc:HGNC:26740]
ENSCJAG00000014191	KNOWN	protein_coding	IL1RAP	chromosome:C_jacchus3.2.1:15:1:98464013:1	12156209	12314257	D	Interleukin-1 receptor accessory protein isoform 1 {ECO:0000313|EMBL:JAB10648.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048923}  [Source:UniProtKB/TrEMBL;Acc:F6QTT3]
ENSCJAG00000014903	KNOWN	protein_coding	TMEM5	chromosome:C_jacchus3.2.1:9:1:124281992:1	52798850	52821700	D	Transmembrane protein 5 {ECO:0000313|EMBL:JAB01870.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027467}  [Source:UniProtKB/TrEMBL;Acc:F7G577]
ENSCJAG00000007175	NOVEL	protein_coding	ENSCJAG00000007175	chromosome:C_jacchus3.2.1:9:1:124281992:1	52680136	52681599	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013328}  [Source:UniProtKB/TrEMBL;Acc:F7C099]
ENSCJAG00000016558	NOVEL	pseudogene	ENSCJAG00000016558	chromosome:C_jacchus3.2.1:14:1:108792865:1	16643043	16643911	R	<no descrition>
ENSCJAG00000016518	KNOWN	protein_coding	TMEM87B	chromosome:C_jacchus3.2.1:14:1:108792865:1	16731763	16793309	D	Transmembrane protein 87B {ECO:0000313|EMBL:JAB09537.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030419}  [Source:UniProtKB/TrEMBL;Acc:F7C6R8]
ENSCJAG00000013968	KNOWN	protein_coding	ILK	chromosome:C_jacchus3.2.1:11:1:130397257:1	69988012	69995104	D	Integrin-linked protein kinase {ECO:0000313|EMBL:JAB11312.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044247}  [Source:UniProtKB/TrEMBL;Acc:F7DKL4]
ENSCJAG00000015748	KNOWN	protein_coding	PPP2R5A	chromosome:C_jacchus3.2.1:19:1:49578535:1	12358049	12419275	R	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform 1 {ECO:0000313|EMBL:JAB08773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029025}  [Source:UniProtKB/TrEMBL;Acc:F7HW73]
ENSCJAG00000014216	KNOWN_BY_PROJECTION	protein_coding	TMEM207	chromosome:C_jacchus3.2.1:15:1:98464013:1	12083582	12104720	R	transmembrane protein 207 [Source:HGNC Symbol;Acc:HGNC:33705]
ENSCJAG00000014218	KNOWN_BY_PROJECTION	protein_coding	CLDN16	chromosome:C_jacchus3.2.1:15:1:98464013:1	12046390	12070597	D	claudin 16 [Source:HGNC Symbol;Acc:HGNC:2037]
ENSCJAG00000001521	KNOWN_BY_PROJECTION	protein_coding	SEC24C	chromosome:C_jacchus3.2.1:12:1:121768101:1	50370727	50397248	R	SEC24 family member C [Source:HGNC Symbol;Acc:HGNC:10705]
ENSCJAG00000014229	KNOWN	protein_coding	CLDN1	chromosome:C_jacchus3.2.1:15:1:98464013:1	11964884	11979540	R	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:F7I4S0]
ENSCJAG00000012442	KNOWN	protein_coding	SNAPC3	chromosome:C_jacchus3.2.1:1:1:210400635:1	117288840	117337650	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022818}; snRNA-activating protein complex subunit 3 {ECO:0000313|EMBL:JAB02256.1}  [Source:UniProtKB/TrEMBL;Acc:F7HWK5]
ENSCJAG00000015742	KNOWN_BY_PROJECTION	protein_coding	TMEM206	chromosome:C_jacchus3.2.1:19:1:49578535:1	12310653	12355513	D	transmembrane protein 206 [Source:HGNC Symbol;Acc:HGNC:25593]
ENSCJAG00000014239	KNOWN_BY_PROJECTION	protein_coding	P3H2	chromosome:C_jacchus3.2.1:15:1:98464013:1	11607157	11786300	R	prolyl 3-hydroxylase 2 [Source:HGNC Symbol;Acc:HGNC:19317]
ENSCJAG00000002786	KNOWN	protein_coding	TP53BP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	20550126	20654328	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005177}  [Source:UniProtKB/TrEMBL;Acc:F7IEY2]
ENSCJAG00000015738	NOVEL	pseudogene	ENSCJAG00000015738	chromosome:C_jacchus3.2.1:19:1:49578535:1	12183401	12184868	D	<no descrition>
ENSCJAG00000012440	NOVEL	pseudogene	ENSCJAG00000012440	chromosome:C_jacchus3.2.1:1:1:210400635:1	117122731	117123200	D	<no descrition>
ENSCJAG00000014012	KNOWN	protein_coding	RRP8	chromosome:C_jacchus3.2.1:11:1:130397257:1	69984246	69987902	R	Ribosomal RNA-processing protein 8 {ECO:0000313|EMBL:JAB03193.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025770}  [Source:UniProtKB/TrEMBL;Acc:F6VCF6]
ENSCJAG00000006111	KNOWN	protein_coding	AVPR1A	chromosome:C_jacchus3.2.1:9:1:124281992:1	52395640	52399304	R	Vasopressin V1a receptor {ECO:0000256|RuleBase:RU046427}  [Source:UniProtKB/TrEMBL;Acc:F7IQD2]
ENSCJAG00000006123	KNOWN	protein_coding	PPM1H	chromosome:C_jacchus3.2.1:9:1:124281992:1	51829011	52111335	R	Protein phosphatase 1H {ECO:0000313|EMBL:JAB07495.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011271}  [Source:UniProtKB/TrEMBL;Acc:F7IMY4]
ENSCJAG00000001513	KNOWN	protein_coding	FUT11	chromosome:C_jacchus3.2.1:12:1:121768101:1	50364658	50369439	R	Alpha-(1,3)-fucosyltransferase 11 {ECO:0000313|EMBL:JAB09171.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002704}  [Source:UniProtKB/TrEMBL;Acc:F7ISY3]
ENSCJAG00000001512	KNOWN	protein_coding	CHCHD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	50356998	50358582	R	Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 {ECO:0000313|EMBL:JAB11908.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002697}  [Source:UniProtKB/TrEMBL;Acc:F7HXD5]
ENSCJAG00000014017	KNOWN_BY_PROJECTION	protein_coding	DNHD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69901532	69947276	D	dynein heavy chain domain 1 [Source:HGNC Symbol;Acc:HGNC:26532]
ENSCJAG00000010103	KNOWN_BY_PROJECTION	protein_coding	COL20A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	56831845	57567796	D	collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
ENSCJAG00000016540	KNOWN_BY_PROJECTION	protein_coding	MERTK	chromosome:C_jacchus3.2.1:14:1:108792865:1	16585392	16704152	D	MER proto-oncogene, tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:7027]
ENSCJAG00000014256	KNOWN	protein_coding	TP63	chromosome:C_jacchus3.2.1:15:1:98464013:1	11282981	11545700	D	Tumor protein 63 isoform 3 {ECO:0000313|EMBL:JAB39252.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026308}  [Source:UniProtKB/TrEMBL;Acc:F7IGK5]
ENSCJAG00000001500	KNOWN_BY_PROJECTION	protein_coding	ZSWIM8	chromosome:C_jacchus3.2.1:12:1:121768101:1	50338128	50353642	R	zinc finger, SWIM-type containing 8 [Source:HGNC Symbol;Acc:HGNC:23528]
ENSCJAG00000016560	NOVEL	pseudogene	ENSCJAG00000016560	chromosome:C_jacchus3.2.1:14:1:108792865:1	16543169	16543578	D	<no descrition>
ENSCJAG00000016636	NOVEL	pseudogene	ENSCJAG00000016636	chromosome:C_jacchus3.2.1:14:1:108792865:1	16480166	16480541	D	<no descrition>
ENSCJAG00000031868	NOVEL	protein_coding	ENSCJAG00000031868	chromosome:C_jacchus3.2.1:11:1:130397257:1	69861273	69887149	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048448}  [Source:UniProtKB/TrEMBL;Acc:F7HIU4]
ENSCJAG00000021551	KNOWN_BY_PROJECTION	protein_coding	PSMB8	chromosome:C_jacchus3.2.1:4:1:171630274:1	33670995	33674177	R	proteasome (prosome, macropain) subunit, beta type, 8 [Source:HGNC Symbol;Acc:HGNC:9545]
ENSCJAG00000009857	KNOWN_BY_PROJECTION	protein_coding	MRGBP	chromosome:C_jacchus3.2.1:5:1:159171411:1	56822112	56827103	D	MRG/MORF4L binding protein [Source:HGNC Symbol;Acc:HGNC:15866]
ENSCJAG00000009843	KNOWN_BY_PROJECTION	protein_coding	NTSR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	56741428	56788363	D	neurotensin receptor 1 (high affinity) [Source:HGNC Symbol;Acc:HGNC:8039]
ENSCJAG00000006525	KNOWN	protein_coding	HERC3	chromosome:C_jacchus3.2.1:3:1:190850796:1	105360423	105457190	R	Putative E3 ubiquitin-protein ligase HERC3 isoform 1 {ECO:0000313|EMBL:JAB09006.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012213}  [Source:UniProtKB/TrEMBL;Acc:F7GTC6]
ENSCJAG00000021550	NOVEL	protein_coding	ENSCJAG00000021550	chromosome:C_jacchus3.2.1:4:1:171630274:1	33660000	33668587	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040124}  [Source:UniProtKB/TrEMBL;Acc:F7I517]
ENSCJAG00000014348	KNOWN_BY_PROJECTION	protein_coding	TPRG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	10845413	10989119	D	tumor protein p63 regulated 1 [Source:HGNC Symbol;Acc:HGNC:24759]
ENSCJAG00000014353	NOVEL	pseudogene	ENSCJAG00000014353	chromosome:C_jacchus3.2.1:15:1:98464013:1	10821132	10821464	R	<no descrition>
ENSCJAG00000015735	KNOWN	protein_coding	ATF3	chromosome:C_jacchus3.2.1:19:1:49578535:1	12102441	12159913	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051643}  [Source:UniProtKB/TrEMBL;Acc:F6ZGU6]
ENSCJAG00000012336	KNOWN_BY_PROJECTION	protein_coding	TTC39B	chromosome:C_jacchus3.2.1:1:1:210400635:1	116980995	117125113	R	tetratricopeptide repeat domain 39B [Source:HGNC Symbol;Acc:HGNC:23704]
ENSCJAG00000014354	KNOWN	protein_coding	LPP	chromosome:C_jacchus3.2.1:15:1:98464013:1	9867048	10556015	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045425}  [Source:UniProtKB/TrEMBL;Acc:F6R0T5]
ENSCJAG00000033382	NOVEL	protein_coding	ENSCJAG00000033382	chromosome:C_jacchus3.2.1:3:1:190850796:1	105157000	105158942	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043879}  [Source:UniProtKB/TrEMBL;Acc:F7I597]
ENSCJAG00000014364	NOVEL	protein_coding	ENSCJAG00000014364	chromosome:C_jacchus3.2.1:15:1:98464013:1	9839870	9840036	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026416}  [Source:UniProtKB/TrEMBL;Acc:F7HZW1]
ENSCJAG00000014367	NOVEL	protein_coding	ENSCJAG00000014367	chromosome:C_jacchus3.2.1:15:1:98464013:1	9826828	9828869	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026434}  [Source:UniProtKB/TrEMBL;Acc:F7HV80]
ENSCJAG00000002852	KNOWN	protein_coding	TUBGCP4	chromosome:C_jacchus3.2.1:10:1:132174527:1	20495077	20548126	D	Gamma-tubulin complex component 4 {ECO:0000313|EMBL:JAB04762.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005262}  [Source:UniProtKB/TrEMBL;Acc:F7HYF3]
ENSCJAG00000015732	KNOWN_BY_PROJECTION	protein_coding	BATF3	chromosome:C_jacchus3.2.1:19:1:49578535:1	12030056	12045565	D	basic leucine zipper transcription factor, ATF-like 3 [Source:HGNC Symbol;Acc:HGNC:28915]
ENSCJAG00000009840	NOVEL	protein_coding	ENSCJAG00000009840	chromosome:C_jacchus3.2.1:5:1:159171411:1	56691641	56695301	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018044}  [Source:UniProtKB/TrEMBL;Acc:F7GRA9]
ENSCJAG00000001456	KNOWN	protein_coding	NDST2	chromosome:C_jacchus3.2.1:12:1:121768101:1	50330966	50337902	D	Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 {ECO:0000313|EMBL:JAB06724.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002666}  [Source:UniProtKB/TrEMBL;Acc:F7I238]
ENSCJAG00000014375	KNOWN	protein_coding	BCL6	chromosome:C_jacchus3.2.1:15:1:98464013:1	9358252	9383003	R	B-cell lymphoma 6 protein isoform 1 {ECO:0000313|EMBL:JAB22125.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026480}  [Source:UniProtKB/TrEMBL;Acc:F7IQV5]
ENSCJAG00000035217	KNOWN_BY_PROJECTION	protein_coding	HLA-DOB	chromosome:C_jacchus3.2.1:4:1:171630274:1	33640516	33641908	R	major histocompatibility complex, class II, DO beta [Source:HGNC Symbol;Acc:HGNC:4937]
ENSCJAG00000009785	KNOWN_BY_PROJECTION	protein_coding	SLCO4A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	56684513	56701678	D	solute carrier organic anion transporter family, member 4A1 [Source:HGNC Symbol;Acc:HGNC:10953]
ENSCJAG00000014409	KNOWN_BY_PROJECTION	protein_coding	RTP2	chromosome:C_jacchus3.2.1:15:1:98464013:1	9331281	9335740	R	receptor (chemosensory) transporter protein 2 [Source:HGNC Symbol;Acc:HGNC:32486]
ENSCJAG00000014146	NOVEL	pseudogene	ENSCJAG00000014146	chromosome:C_jacchus3.2.1:5:1:159171411:1	56607664	56608025	D	<no descrition>
ENSCJAG00000033115	NOVEL	pseudogene	ENSCJAG00000033115	chromosome:C_jacchus3.2.1:5:1:159171411:1	56572801	56573107	R	<no descrition>
ENSCJAG00000014415	KNOWN	protein_coding	SST	chromosome:C_jacchus3.2.1:15:1:98464013:1	9301183	9302643	R	Somatostatin preproprotein {ECO:0000313|EMBL:JAB44312.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026512}  [Source:UniProtKB/TrEMBL;Acc:F7IIT0]
ENSCJAG00000002903	KNOWN	protein_coding	ZSCAN29	chromosome:C_jacchus3.2.1:10:1:132174527:1	20484852	20494058	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005284}; Zinc finger and SCAN domain-containing protein 29 {ECO:0000313|EMBL:JAB14436.1}  [Source:UniProtKB/TrEMBL;Acc:F7HSC8]
ENSCJAG00000014427	KNOWN_BY_PROJECTION	protein_coding	RTP4	chromosome:C_jacchus3.2.1:15:1:98464013:1	8977683	8982001	D	receptor (chemosensory) transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]
ENSCJAG00000015718	KNOWN	protein_coding	NSL1	chromosome:C_jacchus3.2.1:19:1:49578535:1	11955165	11993701	D	Kinetochore-associated protein NSL1 homolog isoform 1 {ECO:0000313|EMBL:JAB02457.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028958}  [Source:UniProtKB/TrEMBL;Acc:F7BLZ8]
ENSCJAG00000002923	KNOWN_BY_PROJECTION	protein_coding	ADAL	chromosome:C_jacchus3.2.1:10:1:132174527:1	20463857	20481030	D	adenosine deaminase-like [Source:HGNC Symbol;Acc:HGNC:31853]
ENSCJAG00000014152	KNOWN_BY_PROJECTION	protein_coding	GATA5	chromosome:C_jacchus3.2.1:5:1:159171411:1	56489959	56505555	R	GATA binding protein 5 [Source:HGNC Symbol;Acc:HGNC:15802]
ENSCJAG00000014173	KNOWN_BY_PROJECTION	protein_coding	RBBP8NL	chromosome:C_jacchus3.2.1:5:1:159171411:1	56437059	56445987	R	RBBP8 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16144]
ENSCJAG00000006632	KNOWN	protein_coding	FAM13A	chromosome:C_jacchus3.2.1:3:1:190850796:1	104967301	105340543	D	Protein FAM13A isoform c {ECO:0000313|EMBL:JAB09793.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012301}  [Source:UniProtKB/TrEMBL;Acc:F7D8H0]
ENSCJAG00000001629	NOVEL	protein_coding	CAJA-DQA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	33563863	33573500	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040123}  [Source:UniProtKB/TrEMBL;Acc:F7I518]
ENSCJAG00000014059	KNOWN	protein_coding	ARFIP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	69839742	69845031	R	Arfaptin-2 isoform 2 {ECO:0000313|EMBL:JAB08624.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025886}  [Source:UniProtKB/TrEMBL;Acc:F6ZCJ2]
ENSCJAG00000014429	KNOWN	protein_coding	MASP1	chromosome:C_jacchus3.2.1:15:1:98464013:1	8826897	8901336	R	Mannan-binding lectin serine protease 1 isoform 3 {ECO:0000313|EMBL:JAB21370.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026576}  [Source:UniProtKB/TrEMBL;Acc:F7I9A8]
ENSCJAG00000014189	KNOWN_BY_PROJECTION	protein_coding	CABLES2	chromosome:C_jacchus3.2.1:5:1:159171411:1	56415293	56436775	R	Cdk5 and Abl enzyme substrate 2 [Source:HGNC Symbol;Acc:HGNC:16143]
ENSCJAG00000015712	KNOWN	protein_coding	TATDN3	chromosome:C_jacchus3.2.1:19:1:49578535:1	11928487	11955078	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028923}  [Source:UniProtKB/TrEMBL;Acc:F7CH27]
ENSCJAG00000014453	KNOWN_BY_PROJECTION	protein_coding	RTP1	chromosome:C_jacchus3.2.1:15:1:98464013:1	8806217	8810215	D	receptor (chemosensory) transporter protein 1 [Source:HGNC Symbol;Acc:HGNC:28580]
ENSCJAG00000015706	KNOWN_BY_PROJECTION	protein_coding	SPATA45	chromosome:C_jacchus3.2.1:19:1:49578535:1	11908156	11921776	D	spermatogenesis associated 45 [Source:HGNC Symbol;Acc:HGNC:33709]
ENSCJAG00000031809	NOVEL	pseudogene	ENSCJAG00000031809	chromosome:C_jacchus3.2.1:3:1:190850796:1	104906973	104908544	R	<no descrition>
ENSCJAG00000034946	KNOWN_BY_PROJECTION	protein_coding	RPL39L	chromosome:C_jacchus3.2.1:15:1:98464013:1	8742627	8762494	R	ribosomal protein L39-like [Source:HGNC Symbol;Acc:HGNC:17094]
ENSCJAG00000022026	KNOWN	protein_coding	GPRIN3	chromosome:C_jacchus3.2.1:3:1:190850796:1	104703573	104763809	D	G protein-regulated inducer of neurite outgrowth 3 {ECO:0000313|EMBL:JAB46116.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040696}  [Source:UniProtKB/TrEMBL;Acc:F7I4M4]
ENSCJAG00000014195	KNOWN	protein_coding	RPS21	chromosome:C_jacchus3.2.1:5:1:159171411:1	56411599	56413024	D	40S ribosomal protein S21 {ECO:0000256|PIRNR:PIRNR002148}  [Source:UniProtKB/TrEMBL;Acc:F7IE69]
ENSCJAG00000014462	KNOWN	protein_coding	ST6GAL1	chromosome:C_jacchus3.2.1:15:1:98464013:1	8642869	8681227	D	Beta-galactoside alpha-2,6-sialyltransferase 1 isoform a {ECO:0000313|EMBL:JAB01936.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026609}  [Source:UniProtKB/TrEMBL;Acc:F7I274]
ENSCJAG00000012327	KNOWN_BY_PROJECTION	protein_coding	C4orf27	chromosome:C_jacchus3.2.1:1:1:210400635:1	116767440	116816434	D	chromosome 4 open reading frame 27 [Source:HGNC Symbol;Acc:HGNC:26051]
ENSCJAG00000014475	NOVEL	protein_coding	ENSCJAG00000014475	chromosome:C_jacchus3.2.1:15:1:98464013:1	8522147	8524164	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026617}  [Source:UniProtKB/TrEMBL;Acc:F7I244]
ENSCJAG00000006670	KNOWN	protein_coding	SNCA	chromosome:C_jacchus3.2.1:3:1:190850796:1	104107517	104225804	D	Alpha-synuclein isoform NACP140 {ECO:0000313|EMBL:JAB12610.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012385}  [Source:UniProtKB/TrEMBL;Acc:F7GY62]
ENSCJAG00000014478	KNOWN_BY_PROJECTION	protein_coding	ADIPOQ	chromosome:C_jacchus3.2.1:15:1:98464013:1	8450944	8454289	D	adiponectin, C1Q and collagen domain containing [Source:HGNC Symbol;Acc:HGNC:13633]
ENSCJAG00000015690	KNOWN	protein_coding	FLVCR1	chromosome:C_jacchus3.2.1:19:1:49578535:1	11862744	11896535	R	Feline leukemia virus subgroup C receptor-related protein 1 {ECO:0000313|EMBL:JAB45633.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028892}  [Source:UniProtKB/TrEMBL;Acc:F6W512]
ENSCJAG00000006708	NOVEL	pseudogene	ENSCJAG00000006708	chromosome:C_jacchus3.2.1:3:1:190850796:1	104065258	104065702	D	<no descrition>
ENSCJAG00000006712	KNOWN_BY_PROJECTION	protein_coding	MMRN1	chromosome:C_jacchus3.2.1:3:1:190850796:1	103976562	104036578	R	multimerin 1 [Source:HGNC Symbol;Acc:HGNC:7178]
ENSCJAG00000016562	KNOWN_BY_PROJECTION	protein_coding	ANAPC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	16402639	16534255	R	anaphase promoting complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:19988]
ENSCJAG00000014480	KNOWN_BY_PROJECTION	protein_coding	RFC4	chromosome:C_jacchus3.2.1:15:1:98464013:1	8386169	8402487	R	replication factor C (activator 1) 4, 37kDa [Source:HGNC Symbol;Acc:HGNC:9972]
ENSCJAG00000015649	KNOWN_BY_PROJECTION	protein_coding	VASH2	chromosome:C_jacchus3.2.1:19:1:49578535:1	11773457	11818683	R	vasohibin 2 [Source:HGNC Symbol;Acc:HGNC:25723]
ENSCJAG00000014493	NOVEL	protein_coding	ENSCJAG00000014493	chromosome:C_jacchus3.2.1:15:1:98464013:1	8382758	8386168	D	<no descrition>
ENSCJAG00000014089	KNOWN	protein_coding	TRIM3	chromosome:C_jacchus3.2.1:11:1:130397257:1	69810036	69838380	R	Tripartite motif-containing protein 3 isoform 2 {ECO:0000313|EMBL:JAB06904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025972}  [Source:UniProtKB/TrEMBL;Acc:F6UPG4]
ENSCJAG00000006723	KNOWN_BY_PROJECTION	protein_coding	CCSER1	chromosome:C_jacchus3.2.1:3:1:190850796:1	102760257	103680601	R	coiled-coil serine-rich protein 1 [Source:HGNC Symbol;Acc:HGNC:29349]
ENSCJAG00000014495	KNOWN_BY_PROJECTION	protein_coding	KNG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	8310928	8342431	D	kininogen 1 [Source:HGNC Symbol;Acc:HGNC:6383]
ENSCJAG00000002936	NOVEL	pseudogene	ENSCJAG00000002936	chromosome:C_jacchus3.2.1:10:1:132174527:1	20458255	20460541	R	<no descrition>
ENSCJAG00000016638	NOVEL	protein_coding	ENSCJAG00000016638	chromosome:C_jacchus3.2.1:14:1:108792865:1	16386154	16387210	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030611}  [Source:UniProtKB/TrEMBL;Acc:F7C5V1]
ENSCJAG00000033499	NOVEL	protein_coding	ENSCJAG00000033499	chromosome:C_jacchus3.2.1:14:1:108792865:1	16390738	16393930	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047814}  [Source:UniProtKB/TrEMBL;Acc:F7H7L9]
ENSCJAG00000034157	NOVEL	pseudogene	ENSCJAG00000034157	chromosome:C_jacchus3.2.1:4:1:171630274:1	33554684	33554832	R	<no descrition>
ENSCJAG00000004435	NOVEL	protein_coding	ENSCJAG00000004435	chromosome:C_jacchus3.2.1:14:1:108792865:1	15991881	16059430	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008022}  [Source:UniProtKB/TrEMBL;Acc:F6ZTE9]
ENSCJAG00000031248	NOVEL	pseudogene	ENSCJAG00000031248	chromosome:C_jacchus3.2.1:3:1:190850796:1	101817676	101818556	R	<no descrition>
ENSCJAG00000002937	KNOWN_BY_PROJECTION	protein_coding	TGM7	chromosome:C_jacchus3.2.1:10:1:132174527:1	20411491	20426407	R	transglutaminase 7 [Source:HGNC Symbol;Acc:HGNC:30790]
ENSCJAG00000006756	NOVEL	protein_coding	ENSCJAG00000006756	chromosome:C_jacchus3.2.1:3:1:190850796:1	100976947	100978506	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012494}  [Source:UniProtKB/TrEMBL;Acc:F7DPD0]
ENSCJAG00000014515	NOVEL	protein_coding	ENSCJAG00000014515	chromosome:C_jacchus3.2.1:15:1:98464013:1	8308766	8309594	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026703}  [Source:UniProtKB/TrEMBL;Acc:F7INB6]
ENSCJAG00000014523	KNOWN_BY_PROJECTION	protein_coding	HRG	chromosome:C_jacchus3.2.1:15:1:98464013:1	8276843	8290262	D	histidine-rich glycoprotein [Source:HGNC Symbol;Acc:HGNC:5181]
ENSCJAG00000002981	NOVEL	protein_coding	ENSCJAG00000002981	chromosome:C_jacchus3.2.1:10:1:132174527:1	20404363	20404939	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005387}  [Source:UniProtKB/TrEMBL;Acc:F7ICD0]
ENSCJAG00000014215	KNOWN_BY_PROJECTION	protein_coding	LAMA5	chromosome:C_jacchus3.2.1:5:1:159171411:1	56331705	56376484	R	laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
ENSCJAG00000014134	KNOWN_BY_PROJECTION	protein_coding	HPX	chromosome:C_jacchus3.2.1:11:1:130397257:1	69792699	69802843	R	hemopexin [Source:HGNC Symbol;Acc:HGNC:5171]
ENSCJAG00000004445	KNOWN	protein_coding	BCL2L11	chromosome:C_jacchus3.2.1:14:1:108792865:1	15649638	15699394	D	Bcl-2-like protein 11 isoform 1 {ECO:0000313|EMBL:JAB07491.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008089}  [Source:UniProtKB/TrEMBL;Acc:F6XMC1]
ENSCJAG00000014536	KNOWN_BY_PROJECTION	protein_coding	FETUB	chromosome:C_jacchus3.2.1:15:1:98464013:1	8251204	8268926	D	fetuin B [Source:HGNC Symbol;Acc:HGNC:3658]
ENSCJAG00000014054	KNOWN	protein_coding	FXC1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69787258	69846821	D	Mitochondrial import inner membrane translocase subunit Tim9 B {ECO:0000313|EMBL:JAB03253.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025843}  [Source:UniProtKB/TrEMBL;Acc:F7AVF7]
ENSCJAG00000014544	KNOWN_BY_PROJECTION	protein_coding	AHSG	chromosome:C_jacchus3.2.1:15:1:98464013:1	8222142	8231027	D	alpha-2-HS-glycoprotein [Source:HGNC Symbol;Acc:HGNC:349]
ENSCJAG00000004477	NOVEL	protein_coding	ENSCJAG00000004477	chromosome:C_jacchus3.2.1:14:1:108792865:1	15497634	15498413	R	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7HWW8]
ENSCJAG00000032067	KNOWN_BY_PROJECTION	protein_coding	ACOXL	chromosome:C_jacchus3.2.1:14:1:108792865:1	15336464	15350671	D	acyl-CoA oxidase-like [Source:HGNC Symbol;Acc:HGNC:25621]
ENSCJAG00000013467	NOVEL	protein_coding	ENSCJAG00000013467	chromosome:C_jacchus3.2.1:14:1:108792865:1	15234249	15240165	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024731}  [Source:UniProtKB/TrEMBL;Acc:F6RRP7]
ENSCJAG00000021548	NOVEL	protein_coding	ENSCJAG00000021548	chromosome:C_jacchus3.2.1:4:1:171630274:1	33517838	33644404	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045561}  [Source:UniProtKB/TrEMBL;Acc:F6SI57]
ENSCJAG00000006144	KNOWN	protein_coding	MON2	chromosome:C_jacchus3.2.1:9:1:124281992:1	51640721	51775189	D	Protein MON2 homolog {ECO:0000313|EMBL:JAB05081.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011563}  [Source:UniProtKB/TrEMBL;Acc:F7I8K9]
ENSCJAG00000015618	KNOWN_BY_PROJECTION	protein_coding	ANGEL2	chromosome:C_jacchus3.2.1:19:1:49578535:1	11750546	11770954	D	angel homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:30534]
ENSCJAG00000012240	KNOWN_BY_PROJECTION	protein_coding	FREM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	116558243	116721645	R	FRAS1 related extracellular matrix 1 [Source:HGNC Symbol;Acc:HGNC:23399]
ENSCJAG00000014557	KNOWN	protein_coding	DNAJB11	chromosome:C_jacchus3.2.1:15:1:98464013:1	8176626	8191753	D	DnaJ homolog subfamily B member 11 {ECO:0000313|EMBL:JAB06598.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026900}  [Source:UniProtKB/TrEMBL;Acc:F7HUX5]
ENSCJAG00000021546	NOVEL	protein_coding	ENSCJAG00000021546	chromosome:C_jacchus3.2.1:4:1:171630274:1	33502964	33504109	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040116}  [Source:UniProtKB/TrEMBL;Acc:F7I522]
ENSCJAG00000021545	NOVEL	protein_coding	ENSCJAG00000021545	chromosome:C_jacchus3.2.1:4:1:171630274:1	33464671	33496975	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040115}  [Source:UniProtKB/TrEMBL;Acc:F7I523]
ENSCJAG00000014620	KNOWN	protein_coding	TBCCD1	chromosome:C_jacchus3.2.1:15:1:98464013:1	8156149	8168937	R	TBCC domain-containing protein 1 {ECO:0000313|EMBL:JAB02634.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026912}  [Source:UniProtKB/TrEMBL;Acc:F7HUU7]
ENSCJAG00000014631	KNOWN_BY_PROJECTION	protein_coding	CRYGS	chromosome:C_jacchus3.2.1:15:1:98464013:1	8143657	8150130	R	crystallin, gamma S [Source:HGNC Symbol;Acc:HGNC:2417]
ENSCJAG00000032332	KNOWN_BY_PROJECTION	protein_coding	TGM5	chromosome:C_jacchus3.2.1:10:1:132174527:1	20363658	20403420	R	transglutaminase 5 [Source:HGNC Symbol;Acc:HGNC:11781]
ENSCJAG00000037326	KNOWN_BY_PROJECTION	protein_coding	EPB42	chromosome:C_jacchus3.2.1:10:1:132174527:1	20326409	20348640	R	erythrocyte membrane protein band 4.2 [Source:HGNC Symbol;Acc:HGNC:3381]
ENSCJAG00000014274	KNOWN	protein_coding	ADRM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	56324636	56331265	D	Proteasomal ubiquitin receptor ADRM1 {ECO:0000313|EMBL:JAB10423.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026280}  [Source:UniProtKB/TrEMBL;Acc:F7INM3]
ENSCJAG00000012234	NOVEL	pseudogene	ENSCJAG00000012234	chromosome:C_jacchus3.2.1:1:1:210400635:1	116525848	116526061	R	<no descrition>
ENSCJAG00000012238	KNOWN_BY_PROJECTION	protein_coding	CER1	chromosome:C_jacchus3.2.1:1:1:210400635:1	116541336	116544615	R	cerberus 1, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:1862]
ENSCJAG00000014637	KNOWN	protein_coding	DGKG	chromosome:C_jacchus3.2.1:15:1:98464013:1	7713909	7932445	R	Diacylglycerol kinase {ECO:0000256|RuleBase:RU361128}  [Source:UniProtKB/TrEMBL;Acc:F7GI17]
ENSCJAG00000012213	KNOWN	protein_coding	ZDHHC21	chromosome:C_jacchus3.2.1:1:1:210400635:1	116445156	116514572	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F7HUB7]
ENSCJAG00000012202	NOVEL	pseudogene	ENSCJAG00000012202	chromosome:C_jacchus3.2.1:1:1:210400635:1	116388156	116389559	D	<no descrition>
ENSCJAG00000013468	KNOWN_BY_PROJECTION	protein_coding	BUB1	chromosome:C_jacchus3.2.1:14:1:108792865:1	15173507	15216033	R	BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]
ENSCJAG00000022217	KNOWN_BY_PROJECTION	protein_coding	LINC00116	chromosome:C_jacchus3.2.1:14:1:108792865:1	15079794	15080815	R	long intergenic non-protein coding RNA 116 [Source:HGNC Symbol;Acc:HGNC:27339]
ENSCJAG00000007762	NOVEL	pseudogene	ENSCJAG00000007762	chromosome:C_jacchus3.2.1:14:1:108792865:1	14999514	15000824	R	<no descrition>
ENSCJAG00000006401	NOVEL	protein_coding	ENSCJAG00000006401	chromosome:C_jacchus3.2.1:9:1:124281992:1	51520238	51521239	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052330}  [Source:UniProtKB/TrEMBL;Acc:F7HKF7]
ENSCJAG00000015526	KNOWN	protein_coding	RPS6KC1	chromosome:C_jacchus3.2.1:19:1:49578535:1	11478142	11721816	R	Ribosomal protein S6 kinase delta-1 isoform a {ECO:0000313|EMBL:JAB27090.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028752}  [Source:UniProtKB/TrEMBL;Acc:F7A3Z0]
ENSCJAG00000014145	KNOWN_BY_PROJECTION	protein_coding	APBB1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69753807	69779468	R	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) [Source:HGNC Symbol;Acc:HGNC:581]
ENSCJAG00000021549	KNOWN_BY_PROJECTION	protein_coding	HLA-DQA2	chromosome:C_jacchus3.2.1:4:1:171630274:1	33238907	33348954	D	major histocompatibility complex, class II, DQ alpha 2 [Source:HGNC Symbol;Acc:HGNC:4943]
ENSCJAG00000014672	KNOWN	protein_coding	ETV5	chromosome:C_jacchus3.2.1:15:1:98464013:1	7608439	7673103	R	ETS translocation variant 5 {ECO:0000313|EMBL:JAB16775.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044681}  [Source:UniProtKB/TrEMBL;Acc:F7HBM3]
ENSCJAG00000001682	NOVEL	pseudogene	ENSCJAG00000001682	chromosome:C_jacchus3.2.1:4:1:171630274:1	33078621	33079357	D	<no descrition>
ENSCJAG00000015514	KNOWN	protein_coding	PROX1	chromosome:C_jacchus3.2.1:19:1:49578535:1	10710364	10758393	R	Prospero homeobox protein 1 {ECO:0000313|EMBL:JAB48556.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028576}  [Source:UniProtKB/TrEMBL;Acc:F6Z561]
ENSCJAG00000001401	KNOWN_BY_PROJECTION	protein_coding	CAMK2G	chromosome:C_jacchus3.2.1:12:1:121768101:1	50260335	50325870	D	calcium/calmodulin-dependent protein kinase II gamma [Source:HGNC Symbol;Acc:HGNC:1463]
ENSCJAG00000013507	KNOWN_BY_PROJECTION	protein_coding	NPHP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	14979080	15065068	R	nephronophthisis 1 (juvenile) [Source:HGNC Symbol;Acc:HGNC:7905]
ENSCJAG00000014300	KNOWN	protein_coding	OSBPL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	56259545	56316397	D	Oxysterol-binding protein {ECO:0000256|RuleBase:RU003845}  [Source:UniProtKB/TrEMBL;Acc:F7IBR7]
ENSCJAG00000014710	KNOWN	protein_coding	TRA2B	chromosome:C_jacchus3.2.1:15:1:98464013:1	7532391	7553864	R	Transformer-2 protein homolog beta isoform 1 {ECO:0000313|EMBL:JAB04809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027104}  [Source:UniProtKB/TrEMBL;Acc:F7DFV0]
ENSCJAG00000014324	NOVEL	pseudogene	ENSCJAG00000014324	chromosome:C_jacchus3.2.1:5:1:159171411:1	56253455	56254083	D	<no descrition>
ENSCJAG00000014326	KNOWN_BY_PROJECTION	protein_coding	HRH3	chromosome:C_jacchus3.2.1:5:1:159171411:1	56237006	56241534	R	histamine receptor H3 [Source:HGNC Symbol;Acc:HGNC:5184]
ENSCJAG00000014259	KNOWN	protein_coding	SMPD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69749001	69753132	D	Sphingomyelin phosphodiesterase isoform 1 {ECO:0000313|EMBL:JAB10347.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026261}  [Source:UniProtKB/TrEMBL;Acc:F7IQZ3]
ENSCJAG00000014360	KNOWN	protein_coding	MTG2	chromosome:C_jacchus3.2.1:5:1:159171411:1	56212422	56219288	D	GTP-binding protein 5 {ECO:0000313|EMBL:JAB25772.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026437}  [Source:UniProtKB/TrEMBL;Acc:F7HV74]
ENSCJAG00000014772	NOVEL	protein_coding	ENSCJAG00000014772	chromosome:C_jacchus3.2.1:15:1:98464013:1	7411943	7412733	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027196}  [Source:UniProtKB/TrEMBL;Acc:F7H038]
ENSCJAG00000015297	NOVEL	protein_coding	ENSCJAG00000015297	chromosome:C_jacchus3.2.1:14:1:108792865:1	14951912	14952637	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028163}  [Source:UniProtKB/TrEMBL;Acc:F6ZQ49]
ENSCJAG00000014774	NOVEL	protein_coding	ENSCJAG00000014774	chromosome:C_jacchus3.2.1:15:1:98464013:1	7397602	7403924	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7H030]
ENSCJAG00000034646	NOVEL	protein_coding	ENSCJAG00000034646	chromosome:C_jacchus3.2.1:11:1:130397257:1	69602616	69604170	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050697}  [Source:UniProtKB/TrEMBL;Acc:F7G1Y6]
ENSCJAG00000015293	KNOWN	protein_coding	MALL	chromosome:C_jacchus3.2.1:14:1:108792865:1	14941338	14958781	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028159}  [Source:UniProtKB/TrEMBL;Acc:F7A6Z0]
ENSCJAG00000015290	NOVEL	protein_coding	ENSCJAG00000015290	chromosome:C_jacchus3.2.1:14:1:108792865:1	14827259	14828367	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028148}  [Source:UniProtKB/TrEMBL;Acc:F7A7Z8]
ENSCJAG00000015268	NOVEL	protein_coding	ENSCJAG00000015268	chromosome:C_jacchus3.2.1:14:1:108792865:1	14802934	14830592	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028139}  [Source:UniProtKB/TrEMBL;Acc:F7AQG2]
ENSCJAG00000033922	NOVEL	protein_coding	ENSCJAG00000033922	chromosome:C_jacchus3.2.1:14:1:108792865:1	14719291	14720802	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021443}  [Source:UniProtKB/TrEMBL;Acc:F6RMF0]
ENSCJAG00000015282	NOVEL	pseudogene	ENSCJAG00000015282	chromosome:C_jacchus3.2.1:14:1:108792865:1	14715607	14716696	D	<no descrition>
ENSCJAG00000017751	NOVEL	protein_coding	ENSCJAG00000017751	chromosome:C_jacchus3.2.1:14:1:108792865:1	14540027	14542671	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032728}  [Source:UniProtKB/TrEMBL;Acc:F7GW15]
ENSCJAG00000017752	NOVEL	pseudogene	ENSCJAG00000017752	chromosome:C_jacchus3.2.1:14:1:108792865:1	14508905	14509310	R	<no descrition>
ENSCJAG00000012155	KNOWN	protein_coding	NFIB	chromosome:C_jacchus3.2.1:1:1:210400635:1	115903755	116230331	R	Nuclear factor 1 {ECO:0000256|RuleBase:RU000690}  [Source:UniProtKB/TrEMBL;Acc:F6YSB0]
ENSCJAG00000001399	KNOWN_BY_PROJECTION	protein_coding	C10orf55	chromosome:C_jacchus3.2.1:12:1:121768101:1	50214946	50221851	D	chromosome 10 open reading frame 55 [Source:HGNC Symbol;Acc:HGNC:31008]
ENSCJAG00000031408	NOVEL	pseudogene	ENSCJAG00000031408	chromosome:C_jacchus3.2.1:14:1:108792865:1	14445754	14446331	D	<no descrition>
ENSCJAG00000017753	NOVEL	protein_coding	ENSCJAG00000017753	chromosome:C_jacchus3.2.1:14:1:108792865:1	14385596	14387181	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032729}  [Source:UniProtKB/TrEMBL;Acc:F7GW11]
ENSCJAG00000015441	KNOWN_BY_PROJECTION	protein_coding	SMYD2	chromosome:C_jacchus3.2.1:19:1:49578535:1	10399310	10455446	R	SET and MYND domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20982]
ENSCJAG00000006737	KNOWN	protein_coding	GRID2	chromosome:C_jacchus3.2.1:3:1:190850796:1	100117517	100831323	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012486}  [Source:UniProtKB/TrEMBL;Acc:F7E4U9]
ENSCJAG00000015440	NOVEL	protein_coding	ENSCJAG00000015440	chromosome:C_jacchus3.2.1:19:1:49578535:1	10199223	10200258	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028434}  [Source:UniProtKB/TrEMBL;Acc:F6WSF9]
ENSCJAG00000012151	NOVEL	protein_coding	ENSCJAG00000012151	chromosome:C_jacchus3.2.1:1:1:210400635:1	115766760	115767848	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022286}  [Source:UniProtKB/TrEMBL;Acc:F7BCC4]
ENSCJAG00000006768	NOVEL	protein_coding	ENSCJAG00000006768	chromosome:C_jacchus3.2.1:3:1:190850796:1	99938147	99939088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012524}  [Source:UniProtKB/TrEMBL;Acc:F7H2Y3]
ENSCJAG00000014377	NOVEL	protein_coding	ENSCJAG00000014377	chromosome:C_jacchus3.2.1:5:1:159171411:1	56179089	56200845	D	<no descrition>
ENSCJAG00000014731	KNOWN	protein_coding	IGF2BP2	chromosome:C_jacchus3.2.1:15:1:98464013:1	7258639	7438679	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027171}  [Source:UniProtKB/TrEMBL;Acc:F7H5B4]
ENSCJAG00000014419	KNOWN_BY_PROJECTION	protein_coding	PSMA7	chromosome:C_jacchus3.2.1:5:1:159171411:1	56157506	56162325	R	proteasome (prosome, macropain) subunit, alpha type, 7 [Source:HGNC Symbol;Acc:HGNC:9536]
ENSCJAG00000014292	KNOWN	protein_coding	CCKBR	chromosome:C_jacchus3.2.1:11:1:130397257:1	69593478	69603474	D	Gastrin/cholecystokinin type B receptor {ECO:0000313|EMBL:JAB18590.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026296}  [Source:UniProtKB/TrEMBL;Acc:F7INJ0]
ENSCJAG00000014434	KNOWN_BY_PROJECTION	protein_coding	LSM14B	chromosome:C_jacchus3.2.1:5:1:159171411:1	56142412	56155207	D	LSM14B, SCD6 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:15887]
ENSCJAG00000002983	KNOWN	protein_coding	CCNDBP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	20314413	20325228	D	Cyclin-D1-binding protein 1 {ECO:0000313|EMBL:JAB06785.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043911}  [Source:UniProtKB/TrEMBL;Acc:F7HY34]
ENSCJAG00000001364	KNOWN	protein_coding	PLAU	chromosome:C_jacchus3.2.1:12:1:121768101:1	50214092	50220393	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002463}; Urokinase-type plasminogen activator isoform 1 preproprotein {ECO:0000313|EMBL:JAB08451.1}  [Source:UniProtKB/TrEMBL;Acc:F7HXM8]
ENSCJAG00000014312	KNOWN_BY_PROJECTION	protein_coding	CNGA4	chromosome:C_jacchus3.2.1:11:1:130397257:1	69569740	69579861	D	cyclic nucleotide gated channel alpha 4 [Source:HGNC Symbol;Acc:HGNC:2152]
ENSCJAG00000001361	NOVEL	pseudogene	ENSCJAG00000001361	chromosome:C_jacchus3.2.1:12:1:121768101:1	50189553	50190093	R	<no descrition>
ENSCJAG00000014340	KNOWN	protein_coding	FAM160A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	69546501	69569686	R	FTS and Hook-interacting protein isoform 1 {ECO:0000313|EMBL:JAB02652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026492}  [Source:UniProtKB/TrEMBL;Acc:F7IQS6]
ENSCJAG00000015389	KNOWN_BY_PROJECTION	protein_coding	PTPN14	chromosome:C_jacchus3.2.1:19:1:49578535:1	10180748	10378485	D	protein tyrosine phosphatase, non-receptor type 14 [Source:HGNC Symbol;Acc:HGNC:9647]
ENSCJAG00000015378	NOVEL	protein_coding	ENSCJAG00000015378	chromosome:C_jacchus3.2.1:19:1:49578535:1	10048548	10051076	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028315}  [Source:UniProtKB/TrEMBL;Acc:F7BQL6]
ENSCJAG00000014775	KNOWN	protein_coding	SENP2	chromosome:C_jacchus3.2.1:15:1:98464013:1	7193108	7244959	D	Sentrin-specific protease 2 {ECO:0000313|EMBL:JAB08653.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043200}  [Source:UniProtKB/TrEMBL;Acc:F7IF37]
ENSCJAG00000033237	NOVEL	protein_coding	ENSCJAG00000033237	chromosome:C_jacchus3.2.1:19:1:49578535:1	9901033	9902020	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048242}  [Source:UniProtKB/TrEMBL;Acc:F7EIA9]
ENSCJAG00000014410	KNOWN_BY_PROJECTION	protein_coding	C11orf42	chromosome:C_jacchus3.2.1:11:1:130397257:1	69540798	69546298	D	chromosome 11 open reading frame 42 [Source:HGNC Symbol;Acc:HGNC:28541]
ENSCJAG00000031565	NOVEL	pseudogene	ENSCJAG00000031565	chromosome:C_jacchus3.2.1:11:1:130397257:1	69509010	69510098	R	<no descrition>
ENSCJAG00000014420	NOVEL	pseudogene	ENSCJAG00000014420	chromosome:C_jacchus3.2.1:11:1:130397257:1	69468655	69469477	R	<no descrition>
ENSCJAG00000014424	NOVEL	pseudogene	ENSCJAG00000014424	chromosome:C_jacchus3.2.1:11:1:130397257:1	69451836	69452718	D	<no descrition>
ENSCJAG00000006305	KNOWN	protein_coding	USP15	chromosome:C_jacchus3.2.1:9:1:124281992:1	51429251	51591632	D	Ubiquitin carboxyl-terminal hydrolase 15 isoform 3 {ECO:0000313|EMBL:JAB04280.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011636}  [Source:UniProtKB/TrEMBL;Acc:F7D675]
ENSCJAG00000014438	KNOWN_BY_PROJECTION	protein_coding	TAF4	chromosome:C_jacchus3.2.1:5:1:159171411:1	55998409	56670952	R	TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa [Source:HGNC Symbol;Acc:HGNC:11537]
ENSCJAG00000014425	NOVEL	pseudogene	ENSCJAG00000014425	chromosome:C_jacchus3.2.1:11:1:130397257:1	69417174	69418317	D	<no descrition>
ENSCJAG00000035270	NOVEL	protein_coding	ENSCJAG00000035270	chromosome:C_jacchus3.2.1:11:1:130397257:1	69316550	69318472	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026854}  [Source:UniProtKB/TrEMBL;Acc:F7I4A6]
ENSCJAG00000017754	KNOWN	protein_coding	SEPT10	chromosome:C_jacchus3.2.1:14:1:108792865:1	14306656	14385298	R	Septin-10 isoform 1 {ECO:0000313|EMBL:JAB04754.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032767}  [Source:UniProtKB/TrEMBL;Acc:F7G8N7]
ENSCJAG00000008259	KNOWN_BY_PROJECTION	protein_coding	OR56A5	chromosome:C_jacchus3.2.1:11:1:130397257:1	69299045	69327000	R	olfactory receptor, family 56, subfamily A, member 5 [Source:HGNC Symbol;Acc:HGNC:14792]
ENSCJAG00000020621	KNOWN_BY_PROJECTION	protein_coding	OR52E5	chromosome:C_jacchus3.2.1:11:1:130397257:1	69259178	69260287	D	olfactory receptor, family 52, subfamily E, member 5 [Source:HGNC Symbol;Acc:HGNC:15214]
ENSCJAG00000020622	NOVEL	protein_coding	ENSCJAG00000020622	chromosome:C_jacchus3.2.1:11:1:130397257:1	69204152	69221854	R	<no descrition>
ENSCJAG00000014798	KNOWN	protein_coding	LIPH	chromosome:C_jacchus3.2.1:15:1:98464013:1	7138038	7178101	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027267}  [Source:UniProtKB/TrEMBL;Acc:F7FF90]
ENSCJAG00000021777	KNOWN_BY_PROJECTION	protein_coding	OR52N2	chromosome:C_jacchus3.2.1:11:1:130397257:1	69187648	69189079	D	olfactory receptor, family 52, subfamily N, member 2 [Source:HGNC Symbol;Acc:HGNC:15228]
ENSCJAG00000007451	NOVEL	pseudogene	ENSCJAG00000007451	chromosome:C_jacchus3.2.1:5:1:159171411:1	55756497	55756714	R	<no descrition>
ENSCJAG00000018812	NOVEL	protein_coding	ENSCJAG00000018812	chromosome:C_jacchus3.2.1:5:1:159171411:1	54064286	54065578	D	<no descrition>
ENSCJAG00000031149	KNOWN_BY_PROJECTION	protein_coding	CDH26	chromosome:C_jacchus3.2.1:5:1:159171411:1	53956630	53986943	D	cadherin 26 [Source:HGNC Symbol;Acc:HGNC:15902]
ENSCJAG00000006416	NOVEL	pseudogene	ENSCJAG00000006416	chromosome:C_jacchus3.2.1:9:1:124281992:1	51034800	51035619	D	<no descrition>
ENSCJAG00000018830	KNOWN_BY_PROJECTION	protein_coding	PPP1R3D	chromosome:C_jacchus3.2.1:5:1:159171411:1	53939327	53940226	R	protein phosphatase 1, regulatory subunit 3D [Source:HGNC Symbol;Acc:HGNC:9294]
ENSCJAG00000006409	KNOWN	protein_coding	FAM19A2	chromosome:C_jacchus3.2.1:9:1:124281992:1	50852152	51172805	R	Protein FAM19A2 {ECO:0000313|EMBL:JAB17113.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011813}  [Source:UniProtKB/TrEMBL;Acc:F7DMM8]
ENSCJAG00000014804	KNOWN	protein_coding	TMEM41A	chromosome:C_jacchus3.2.1:15:1:98464013:1	7120149	7128243	R	Transmembrane protein 41A {ECO:0000313|EMBL:JAB27959.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027283}  [Source:UniProtKB/TrEMBL;Acc:F7FEL3]
ENSCJAG00000001299	KNOWN_BY_PROJECTION	protein_coding	SH3RF3	chromosome:C_jacchus3.2.1:14:1:108792865:1	14138566	14282780	D	SH3 domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:24699]
ENSCJAG00000018823	KNOWN_BY_PROJECTION	protein_coding	FAM217B	chromosome:C_jacchus3.2.1:5:1:159171411:1	53938284	53947997	D	family with sequence similarity 217, member B [Source:HGNC Symbol;Acc:HGNC:16170]
ENSCJAG00000001290	NOVEL	protein_coding	ENSCJAG00000001290	chromosome:C_jacchus3.2.1:14:1:108792865:1	13917269	13918824	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002270}  [Source:UniProtKB/TrEMBL;Acc:F7HQH7]
ENSCJAG00000006419	KNOWN_BY_PROJECTION	protein_coding	SLC16A7	chromosome:C_jacchus3.2.1:9:1:124281992:1	48654819	48821976	D	solute carrier family 16 (monocarboxylate transporter), member 7 [Source:HGNC Symbol;Acc:HGNC:10928]
ENSCJAG00000020140	NOVEL	protein_coding	TRIM5	chromosome:C_jacchus3.2.1:11:1:130397257:1	69101122	69115716	R	Tripartite motif protein TRIM5 (Predicted) {ECO:0000313|EMBL:ABZ80318.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051169}  [Source:UniProtKB/TrEMBL;Acc:B0VXD3]
ENSCJAG00000002999	KNOWN	protein_coding	TMEM62	chromosome:C_jacchus3.2.1:10:1:132174527:1	20258295	20314273	D	Transmembrane protein 62 {ECO:0000313|EMBL:JAB09677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005440}  [Source:UniProtKB/TrEMBL;Acc:F7I0P5]
ENSCJAG00000015327	KNOWN	protein_coding	KCNK2	chromosome:C_jacchus3.2.1:19:1:49578535:1	9526706	9751863	R	Potassium channel subfamily K member 2 isoform b {ECO:0000313|EMBL:JAB21065.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028254}  [Source:UniProtKB/TrEMBL;Acc:F6VQD0]
ENSCJAG00000014818	KNOWN_BY_PROJECTION	protein_coding	MAP3K13	chromosome:C_jacchus3.2.1:15:1:98464013:1	6932567	7112121	D	mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
ENSCJAG00000001257	KNOWN_BY_PROJECTION	protein_coding	EDAR	chromosome:C_jacchus3.2.1:14:1:108792865:1	13682255	13771119	R	ectodysplasin A receptor [Source:HGNC Symbol;Acc:HGNC:2895]
ENSCJAG00000006778	KNOWN	protein_coding	SMARCAD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	99625322	99708622	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012710}  [Source:UniProtKB/TrEMBL;Acc:F6SDI3]
ENSCJAG00000014856	KNOWN_BY_PROJECTION	protein_coding	EHHADH	chromosome:C_jacchus3.2.1:15:1:98464013:1	6826297	6907007	R	enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3247]
ENSCJAG00000001240	KNOWN_BY_PROJECTION	protein_coding	CCDC138	chromosome:C_jacchus3.2.1:14:1:108792865:1	13571829	13656032	D	coiled-coil domain containing 138 [Source:HGNC Symbol;Acc:HGNC:26531]
ENSCJAG00000033484	NOVEL	pseudogene	ENSCJAG00000033484	chromosome:C_jacchus3.2.1:9:1:124281992:1	48132231	48132972	R	<no descrition>
ENSCJAG00000014866	KNOWN	protein_coding	VPS8	chromosome:C_jacchus3.2.1:15:1:98464013:1	6422621	6622374	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027439}  [Source:UniProtKB/TrEMBL;Acc:F7GPA9]
ENSCJAG00000018836	KNOWN_BY_PROJECTION	protein_coding	SYCP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	53847156	53931065	R	synaptonemal complex protein 2 [Source:HGNC Symbol;Acc:HGNC:11490]
ENSCJAG00000001337	KNOWN_BY_PROJECTION	protein_coding	VCL	chromosome:C_jacchus3.2.1:12:1:121768101:1	50009292	50137723	R	vinculin [Source:HGNC Symbol;Acc:HGNC:12665]
ENSCJAG00000014902	NOVEL	protein_coding	ENSCJAG00000014902	chromosome:C_jacchus3.2.1:15:1:98464013:1	6213204	6214091	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027451}  [Source:UniProtKB/TrEMBL;Acc:F7G5R0]
ENSCJAG00000018885	KNOWN_BY_PROJECTION	protein_coding	EDN3	chromosome:C_jacchus3.2.1:5:1:159171411:1	53345415	53368745	D	endothelin 3 [Source:HGNC Symbol;Acc:HGNC:3178]
ENSCJAG00000018905	KNOWN	protein_coding	ENSCJAG00000018905	chromosome:C_jacchus3.2.1:5:1:159171411:1	53027925	53038071	R	Protein slowmo homolog 2 isoform 1 {ECO:0000313|EMBL:JAB03666.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046652}  [Source:UniProtKB/TrEMBL;Acc:F7IMI1]
ENSCJAG00000006866	KNOWN_BY_PROJECTION	protein_coding	HPGDS	chromosome:C_jacchus3.2.1:3:1:190850796:1	99600565	99784008	D	hematopoietic prostaglandin D synthase [Source:HGNC Symbol;Acc:HGNC:17890]
ENSCJAG00000014911	KNOWN_BY_PROJECTION	protein_coding	EPHB3	chromosome:C_jacchus3.2.1:15:1:98464013:1	6145691	6165882	D	EPH receptor B3 [Source:HGNC Symbol;Acc:HGNC:3394]
ENSCJAG00000003007	KNOWN	protein_coding	UBR1	chromosome:C_jacchus3.2.1:10:1:132174527:1	20079242	20244687	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005581}  [Source:UniProtKB/TrEMBL;Acc:F7ICC0]
ENSCJAG00000011950	KNOWN	protein_coding	MPDZ	chromosome:C_jacchus3.2.1:1:1:210400635:1	114919244	115064311	R	Multiple PDZ domain protein isoform 1 {ECO:0000313|EMBL:JAB27401.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044298}  [Source:UniProtKB/TrEMBL;Acc:F7HHK2]
ENSCJAG00000001319	KNOWN	protein_coding	AP3M1	chromosome:C_jacchus3.2.1:12:1:121768101:1	49975831	50002867	D	AP-3 complex subunit mu-1 {ECO:0000313|EMBL:JAB11470.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047475}  [Source:UniProtKB/TrEMBL;Acc:F7IFP3]
ENSCJAG00000001312	NOVEL	protein_coding	ENSCJAG00000001312	chromosome:C_jacchus3.2.1:12:1:121768101:1	49671374	49671963	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002307}  [Source:UniProtKB/TrEMBL;Acc:F7IL68]
ENSCJAG00000014925	KNOWN_BY_PROJECTION	protein_coding	CHRD	chromosome:C_jacchus3.2.1:15:1:98464013:1	5992121	6002335	D	chordin [Source:HGNC Symbol;Acc:HGNC:1949]
ENSCJAG00000015237	KNOWN_BY_PROJECTION	protein_coding	KCTD3	chromosome:C_jacchus3.2.1:19:1:49578535:1	9226491	9281250	R	potassium channel tetramerization domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21305]
ENSCJAG00000006882	KNOWN	protein_coding	PDLIM5	chromosome:C_jacchus3.2.1:3:1:190850796:1	99239942	99455105	R	PDZ and LIM domain protein 5 isoform a {ECO:0000313|EMBL:JAB11445.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012781}  [Source:UniProtKB/TrEMBL;Acc:F6R5M2]
ENSCJAG00000014943	NOVEL	pseudogene	ENSCJAG00000014943	chromosome:C_jacchus3.2.1:15:1:98464013:1	5982719	5983201	R	<no descrition>
ENSCJAG00000014959	KNOWN	protein_coding	POLR2H	chromosome:C_jacchus3.2.1:15:1:98464013:1	5974084	5979146	D	DNA-directed RNA polymerases I, II, and III subunit RPABC3 {ECO:0000313|EMBL:JAB06635.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027546}  [Source:UniProtKB/TrEMBL;Acc:F7DU03]
ENSCJAG00000015233	NOVEL	protein_coding	ENSCJAG00000015233	chromosome:C_jacchus3.2.1:19:1:49578535:1	8616679	8626998	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028077}  [Source:UniProtKB/TrEMBL;Acc:F6UKL9]
ENSCJAG00000001291	KNOWN	protein_coding	ADK	chromosome:C_jacchus3.2.1:12:1:121768101:1	49352706	49975460	R	Adenosine kinase isoform b {ECO:0000313|EMBL:JAB15839.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002297}  [Source:UniProtKB/TrEMBL;Acc:F7ITC7]
ENSCJAG00000018911	KNOWN	protein_coding	ATP5E	chromosome:C_jacchus3.2.1:5:1:159171411:1	53023314	53026993	R	ATP synthase subunit epsilon, mitochondrial {ECO:0000313|EMBL:JAB12690.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035111}  [Source:UniProtKB/TrEMBL;Acc:F7I1U0]
ENSCJAG00000018914	KNOWN_BY_PROJECTION	protein_coding	TUBB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	53013848	53019685	D	tubulin, beta 1 class VI [Source:HGNC Symbol;Acc:HGNC:16257]
ENSCJAG00000033443	NOVEL	protein_coding	ENSCJAG00000033443	chromosome:C_jacchus3.2.1:12:1:121768101:1	49246945	49247223	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050389}  [Source:UniProtKB/TrEMBL;Acc:F7FBC0]
ENSCJAG00000018918	KNOWN_BY_PROJECTION	protein_coding	CTSZ	chromosome:C_jacchus3.2.1:5:1:159171411:1	52989559	53001623	R	cathepsin Z [Source:HGNC Symbol;Acc:HGNC:2547]
ENSCJAG00000006930	KNOWN_BY_PROJECTION	protein_coding	BMPR1B	chromosome:C_jacchus3.2.1:3:1:190850796:1	98713131	98874054	R	bone morphogenetic protein receptor, type IB [Source:HGNC Symbol;Acc:HGNC:1077]
ENSCJAG00000015184	KNOWN_BY_PROJECTION	protein_coding	USH2A	chromosome:C_jacchus3.2.1:19:1:49578535:1	8400812	9238169	D	Usher syndrome 2A (autosomal recessive, mild) [Source:HGNC Symbol;Acc:HGNC:12601]
ENSCJAG00000014964	KNOWN_BY_PROJECTION	protein_coding	CLCN2	chromosome:C_jacchus3.2.1:15:1:98464013:1	5955786	5972297	R	chloride channel, voltage-sensitive 2 [Source:HGNC Symbol;Acc:HGNC:2020]
ENSCJAG00000001189	KNOWN_BY_PROJECTION	protein_coding	RANBP2	chromosome:C_jacchus3.2.1:14:1:108792865:1	13506425	13570910	D	RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848]
ENSCJAG00000018927	KNOWN_BY_PROJECTION	protein_coding	NELFCD	chromosome:C_jacchus3.2.1:5:1:159171411:1	52973755	52988984	D	negative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]
ENSCJAG00000011942	NOVEL	protein_coding	ENSCJAG00000011942	chromosome:C_jacchus3.2.1:1:1:210400635:1	114828444	114829699	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021934}  [Source:UniProtKB/TrEMBL;Acc:F6PGL8]
ENSCJAG00000014992	KNOWN	protein_coding	FAM131A	chromosome:C_jacchus3.2.1:15:1:98464013:1	5945563	5955418	D	Protein FAM131A isoform 1 {ECO:0000313|EMBL:JAB04199.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027612}  [Source:UniProtKB/TrEMBL;Acc:F7H4H4]
ENSCJAG00000011941	KNOWN	protein_coding	LURAP1L	chromosome:C_jacchus3.2.1:1:1:210400635:1	114612193	114652252	D	Leucine rich adaptor protein 1-like {ECO:0000313|EMBL:JAB08536.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021918}  [Source:UniProtKB/TrEMBL;Acc:F6PQ01]
ENSCJAG00000001227	KNOWN_BY_PROJECTION	protein_coding	KAT6B	chromosome:C_jacchus3.2.1:12:1:121768101:1	49000679	49210497	R	K(lysine) acetyltransferase 6B [Source:HGNC Symbol;Acc:HGNC:17582]
ENSCJAG00000001153	KNOWN	protein_coding	LIMS1	chromosome:C_jacchus3.2.1:14:1:108792865:1	13338132	13487540	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002040}  [Source:UniProtKB/TrEMBL;Acc:F7I2K6]
ENSCJAG00000015141	KNOWN	protein_coding	ESRRG	chromosome:C_jacchus3.2.1:19:1:49578535:1	7680416	8313508	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038519}  [Source:UniProtKB/TrEMBL;Acc:F7IGB3]
ENSCJAG00000015133	NOVEL	protein_coding	ENSCJAG00000015133	chromosome:C_jacchus3.2.1:19:1:49578535:1	7391009	7394271	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027899}  [Source:UniProtKB/TrEMBL;Acc:F7FRE5]
ENSCJAG00000020117	NOVEL	protein_coding	ENSCJAG00000020117	chromosome:C_jacchus3.2.1:11:1:130397257:1	69035964	69153299	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048104}  [Source:UniProtKB/TrEMBL;Acc:F7D9E9]
ENSCJAG00000032739	NOVEL	protein_coding	ENSCJAG00000032739	chromosome:C_jacchus3.2.1:19:1:49578535:1	7071090	7073568	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045720}  [Source:UniProtKB/TrEMBL;Acc:F6T418]
ENSCJAG00000017874	KNOWN_BY_PROJECTION	protein_coding	GPATCH2	chromosome:C_jacchus3.2.1:19:1:49578535:1	7136569	7148630	D	G patch domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25499]
ENSCJAG00000033866	KNOWN_BY_PROJECTION	protein_coding	ZFP14	chromosome:C_jacchus3.2.1:14:1:108792865:1	13218313	13221250	D	ZFP14 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29312]
ENSCJAG00000012909	KNOWN_BY_PROJECTION	protein_coding	SPATA17	chromosome:C_jacchus3.2.1:19:1:49578535:1	6947150	6955311	R	spermatogenesis associated 17 [Source:HGNC Symbol;Acc:HGNC:25184]
ENSCJAG00000012911	NOVEL	pseudogene	ENSCJAG00000012911	chromosome:C_jacchus3.2.1:19:1:49578535:1	6524201	6524784	R	<no descrition>
ENSCJAG00000012916	NOVEL	protein_coding	ENSCJAG00000012916	chromosome:C_jacchus3.2.1:19:1:49578535:1	6445876	6483723	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023685}  [Source:UniProtKB/TrEMBL;Acc:F7GXI6]
ENSCJAG00000020169	NOVEL	pseudogene	ENSCJAG00000020169	chromosome:C_jacchus3.2.1:11:1:130397257:1	69007039	69008049	D	<no descrition>
ENSCJAG00000001137	KNOWN	protein_coding	GCC2	chromosome:C_jacchus3.2.1:14:1:108792865:1	13202403	13293425	D	GRIP and coiled-coil domain-containing protein 2 {ECO:0000313|EMBL:JAB30132.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048691}  [Source:UniProtKB/TrEMBL;Acc:F6SP45]
ENSCJAG00000020172	NOVEL	protein_coding	ENSCJAG00000020172	chromosome:C_jacchus3.2.1:11:1:130397257:1	68957461	68962157	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037517}  [Source:UniProtKB/TrEMBL;Acc:F6YFR3]
ENSCJAG00000020175	KNOWN_BY_PROJECTION	protein_coding	UBQLNL	chromosome:C_jacchus3.2.1:11:1:130397257:1	68954303	68955366	R	ubiquilin-like [Source:HGNC Symbol;Acc:HGNC:28294]
ENSCJAG00000012931	KNOWN	protein_coding	TGFB2	chromosome:C_jacchus3.2.1:19:1:49578535:1	6333106	6430741	R	Transforming growth factor beta-2 isoform 1 {ECO:0000313|EMBL:JAB17887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023726}  [Source:UniProtKB/TrEMBL;Acc:F7GC85]
ENSCJAG00000020177	KNOWN_BY_PROJECTION	protein_coding	UBQLN3	chromosome:C_jacchus3.2.1:11:1:130397257:1	68944735	68947374	R	ubiquilin 3 [Source:HGNC Symbol;Acc:HGNC:12510]
ENSCJAG00000034046	NOVEL	protein_coding	ENSCJAG00000034046	chromosome:C_jacchus3.2.1:11:1:130397257:1	68904851	68906116	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H769]
ENSCJAG00000021781	KNOWN_BY_PROJECTION	protein_coding	OR51I2	chromosome:C_jacchus3.2.1:11:1:130397257:1	68876137	68878931	D	olfactory receptor, family 51, subfamily I, member 2 [Source:HGNC Symbol;Acc:HGNC:15201]
ENSCJAG00000031261	NOVEL	pseudogene	ENSCJAG00000031261	chromosome:C_jacchus3.2.1:11:1:130397257:1	68894359	68895254	R	<no descrition>
ENSCJAG00000031686	NOVEL	protein_coding	ENSCJAG00000031686	chromosome:C_jacchus3.2.1:11:1:130397257:1	68845267	68847131	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6S484]
ENSCJAG00000012954	KNOWN_BY_PROJECTION	protein_coding	LYPLAL1	chromosome:C_jacchus3.2.1:19:1:49578535:1	5523907	5566541	R	lysophospholipase-like 1 [Source:HGNC Symbol;Acc:HGNC:20440]
ENSCJAG00000011907	KNOWN_BY_PROJECTION	protein_coding	TYRP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	114537376	114555080	D	tyrosinase-related protein 1 [Source:HGNC Symbol;Acc:HGNC:12450]
ENSCJAG00000004110	NOVEL	protein_coding	ENSCJAG00000004110	chromosome:C_jacchus3.2.1:19:1:49578535:1	4818802	4822668	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007468}  [Source:UniProtKB/TrEMBL;Acc:F6TEW1]
ENSCJAG00000034547	NOVEL	protein_coding	ENSCJAG00000034547	chromosome:C_jacchus3.2.1:19:1:49578535:1	4808344	4809756	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044213}  [Source:UniProtKB/TrEMBL;Acc:F7EEC6]
ENSCJAG00000006423	KNOWN_BY_PROJECTION	protein_coding	LRIG3	chromosome:C_jacchus3.2.1:9:1:124281992:1	47937250	47985491	R	leucine-rich repeats and immunoglobulin-like domains 3 [Source:HGNC Symbol;Acc:HGNC:30991]
ENSCJAG00000004103	KNOWN_BY_PROJECTION	protein_coding	SLC30A10	chromosome:C_jacchus3.2.1:19:1:49578535:1	4764577	4779451	D	solute carrier family 30, member 10 [Source:HGNC Symbol;Acc:HGNC:25355]
ENSCJAG00000020217	KNOWN_BY_PROJECTION	protein_coding	SULT1C2	chromosome:C_jacchus3.2.1:14:1:108792865:1	13028224	13047940	D	sulfotransferase family, cytosolic, 1C, member 2 [Source:HGNC Symbol;Acc:HGNC:11456]
ENSCJAG00000004101	NOVEL	protein_coding	ENSCJAG00000004101	chromosome:C_jacchus3.2.1:19:1:49578535:1	4678255	4679197	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007446}  [Source:UniProtKB/TrEMBL;Acc:F6U0Z0]
ENSCJAG00000020183	NOVEL	pseudogene	ENSCJAG00000020183	chromosome:C_jacchus3.2.1:11:1:130397257:1	68833471	68834424	D	<no descrition>
ENSCJAG00000011892	NOVEL	protein_coding	ENSCJAG00000011892	chromosome:C_jacchus3.2.1:1:1:210400635:1	113545602	113545981	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021840}  [Source:UniProtKB/TrEMBL;Acc:F6RJ84]
ENSCJAG00000011896	NOVEL	protein_coding	ENSCJAG00000011896	chromosome:C_jacchus3.2.1:1:1:210400635:1	113546542	113548295	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021853}  [Source:UniProtKB/TrEMBL;Acc:F6R7Z8]
ENSCJAG00000033041	NOVEL	pseudogene	ENSCJAG00000033041	chromosome:C_jacchus3.2.1:11:1:130397257:1	68792729	68793675	D	<no descrition>
ENSCJAG00000032401	NOVEL	protein_coding	ENSCJAG00000032401	chromosome:C_jacchus3.2.1:1:1:210400635:1	111397944	111398729	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047509}  [Source:UniProtKB/TrEMBL;Acc:F7I685]
ENSCJAG00000020187	KNOWN_BY_PROJECTION	protein_coding	HBE1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68691489	68705254	R	hemoglobin, epsilon 1 [Source:HGNC Symbol;Acc:HGNC:4830]
ENSCJAG00000037169	KNOWN_BY_PROJECTION	protein_coding	SULT1C3	chromosome:C_jacchus3.2.1:14:1:108792865:1	12981605	12999398	D	sulfotransferase family, cytosolic, 1C, member 3 [Source:HGNC Symbol;Acc:HGNC:33543]
ENSCJAG00000020197	NOVEL	protein_coding	HBG2_1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68682525	68684197	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037558}  [Source:UniProtKB/TrEMBL;Acc:F6WIM6]
ENSCJAG00000021084	KNOWN	protein_coding	SLC5A7	chromosome:C_jacchus3.2.1:14:1:108792865:1	12623339	12649972	D	High affinity choline transporter 1 {ECO:0000313|EMBL:JAB18407.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049000}  [Source:UniProtKB/TrEMBL;Acc:F6ZJ07]
ENSCJAG00000021083	NOVEL	pseudogene	ENSCJAG00000021083	chromosome:C_jacchus3.2.1:14:1:108792865:1	11594030	11594643	R	<no descrition>
ENSCJAG00000014999	KNOWN_BY_PROJECTION	protein_coding	EIF4G1	chromosome:C_jacchus3.2.1:15:1:98464013:1	5920135	5943825	D	eukaryotic translation initiation factor 4 gamma, 1 [Source:HGNC Symbol;Acc:HGNC:3296]
ENSCJAG00000020208	KNOWN	protein_coding	HBG1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68677645	68679170	R	Hemoglobin subunit gamma  [Source:UniProtKB/Swiss-Prot;Acc:Q9GJS7]
ENSCJAG00000006487	NOVEL	protein_coding	ENSCJAG00000006487	chromosome:C_jacchus3.2.1:9:1:124281992:1	46822863	46823503	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011971}  [Source:UniProtKB/TrEMBL;Acc:F7FL13]
ENSCJAG00000018939	KNOWN_BY_PROJECTION	protein_coding	GNAS	chromosome:C_jacchus3.2.1:5:1:159171411:1	52831247	52902298	D	GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
ENSCJAG00000020214	KNOWN	protein_coding	HBB	chromosome:C_jacchus3.2.1:11:1:130397257:1	68655938	68663848	R	Hemoglobin subunit beta  [Source:UniProtKB/Swiss-Prot;Acc:Q6WN28]
ENSCJAG00000001221	KNOWN	protein_coding	DUPD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	48973623	48995959	D	Dual specificity phosphatase DUPD1 {ECO:0000313|EMBL:JAB35077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002126}  [Source:UniProtKB/TrEMBL;Acc:F7IJ24]
ENSCJAG00000006490	KNOWN	protein_coding	XRCC6BP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	46786257	46803565	D	Mitochondrial inner membrane protease ATP23 homolog {ECO:0000313|EMBL:JAB16754.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011983}  [Source:UniProtKB/TrEMBL;Acc:F7F7H5]
ENSCJAG00000032656	NOVEL	protein_coding	ENSCJAG00000032656	chromosome:C_jacchus3.2.1:11:1:130397257:1	68456379	68457648	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042639}  [Source:UniProtKB/TrEMBL;Acc:F7ANG6]
ENSCJAG00000020223	NOVEL	protein_coding	ENSCJAG00000020223	chromosome:C_jacchus3.2.1:11:1:130397257:1	68547241	68589348	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6S0N2]
ENSCJAG00000006497	NOVEL	pseudogene	ENSCJAG00000006497	chromosome:C_jacchus3.2.1:9:1:124281992:1	46739978	46741515	D	<no descrition>
ENSCJAG00000015687	NOVEL	pseudogene	ENSCJAG00000015687	chromosome:C_jacchus3.2.1:11:1:130397257:1	68423192	68424119	D	<no descrition>
ENSCJAG00000023063	NOVEL	protein_coding	ENSCJAG00000023063	chromosome:C_jacchus3.2.1:11:1:130397257:1	68375414	68398721	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7F1G0]
ENSCJAG00000015680	NOVEL	protein_coding	OR51L1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68328104	68341152	D	Olfactory receptor, family 51, subfamily L, member 1 (Predicted) {ECO:0000313|EMBL:ABZ80287.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041594}  [Source:UniProtKB/TrEMBL;Acc:B0VXA2]
ENSCJAG00000015671	NOVEL	pseudogene	ENSCJAG00000015671	chromosome:C_jacchus3.2.1:11:1:130397257:1	68294288	68295284	R	<no descrition>
ENSCJAG00000006998	KNOWN_BY_PROJECTION	protein_coding	UNC5C	chromosome:C_jacchus3.2.1:3:1:190850796:1	98302880	98699482	D	unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
ENSCJAG00000015660	NOVEL	pseudogene	ENSCJAG00000015660	chromosome:C_jacchus3.2.1:11:1:130397257:1	68230557	68231619	D	<no descrition>
ENSCJAG00000015659	KNOWN_BY_PROJECTION	protein_coding	OR51H1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68213863	68240123	R	olfactory receptor, family 51, subfamily H, member 1 [Source:HGNC Symbol;Acc:HGNC:14833]
ENSCJAG00000001621	NOVEL	pseudogene	ENSCJAG00000001621	chromosome:C_jacchus3.2.1:11:1:130397257:1	68165154	68166096	D	<no descrition>
ENSCJAG00000015640	NOVEL	protein_coding	ENSCJAG00000015640	chromosome:C_jacchus3.2.1:11:1:130397257:1	68047860	68049189	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6ZLF6]
ENSCJAG00000023057	NOVEL	protein_coding	ENSCJAG00000023057	chromosome:C_jacchus3.2.1:11:1:130397257:1	68057455	68058970	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7F1I3]
ENSCJAG00000015645	NOVEL	protein_coding	ENSCJAG00000015645	chromosome:C_jacchus3.2.1:11:1:130397257:1	68098075	68099079	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6Y0J9]
ENSCJAG00000015638	NOVEL	protein_coding	ENSCJAG00000015638	chromosome:C_jacchus3.2.1:11:1:130397257:1	68029310	68030722	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6ZLK4]
ENSCJAG00000015632	NOVEL	protein_coding	OLR45	chromosome:C_jacchus3.2.1:11:1:130397257:1	68017235	68035800	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VX89]
ENSCJAG00000015631	KNOWN_BY_PROJECTION	protein_coding	OR51E1	chromosome:C_jacchus3.2.1:11:1:130397257:1	67972397	67982941	D	olfactory receptor, family 51, subfamily E, member 1 [Source:HGNC Symbol;Acc:HGNC:15194]
ENSCJAG00000015615	KNOWN	protein_coding	TRIM68	chromosome:C_jacchus3.2.1:11:1:130397257:1	67927971	67936256	R	E3 ubiquitin-protein ligase TRIM68 {ECO:0000313|EMBL:JAB07701.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028777}  [Source:UniProtKB/TrEMBL;Acc:F7A322]
ENSCJAG00000006503	KNOWN	protein_coding	CTDSP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	46655359	46678350	R	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 {ECO:0000313|EMBL:JAB08583.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012059}  [Source:UniProtKB/TrEMBL;Acc:F7GYP7]
ENSCJAG00000023148	NOVEL	protein_coding	ENSCJAG00000023148	chromosome:C_jacchus3.2.1:11:1:130397257:1	67917383	67923998	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HA79]
ENSCJAG00000031207	NOVEL	protein_coding	ENSCJAG00000031207	chromosome:C_jacchus3.2.1:11:1:130397257:1	67784111	67785032	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044727}  [Source:UniProtKB/TrEMBL;Acc:F7GQL0]
ENSCJAG00000033565	NOVEL	protein_coding	ENSCJAG00000033565	chromosome:C_jacchus3.2.1:11:1:130397257:1	67781962	67800413	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045538}  [Source:UniProtKB/TrEMBL;Acc:F6T4M9]
ENSCJAG00000015603	NOVEL	pseudogene	ENSCJAG00000015603	chromosome:C_jacchus3.2.1:11:1:130397257:1	67731392	67731687	D	<no descrition>
ENSCJAG00000034929	NOVEL	pseudogene	ENSCJAG00000034929	chromosome:C_jacchus3.2.1:11:1:130397257:1	67716682	67716991	D	<no descrition>
ENSCJAG00000001638	KNOWN	protein_coding	CAJA-DRB1	chromosome:C_jacchus3.2.1:4:1:171630274:1	33053183	33266140	R	Callithrix jacchus h-2 class II histocompatibility antigen, I-A beta chain-like (LOC100387854), mRNA. [Source:RefSeq mRNA;Acc:NM_001267731]
ENSCJAG00000001195	KNOWN_BY_PROJECTION	protein_coding	DUSP13	chromosome:C_jacchus3.2.1:12:1:121768101:1	48912393	48927805	D	dual specificity phosphatase 13 [Source:HGNC Symbol;Acc:HGNC:19681]
ENSCJAG00000003967	KNOWN_BY_PROJECTION	protein_coding	EPRS	chromosome:C_jacchus3.2.1:19:1:49578535:1	4632471	4718424	D	glutamyl-prolyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:3418]
ENSCJAG00000001186	KNOWN	protein_coding	SAMD8	chromosome:C_jacchus3.2.1:12:1:121768101:1	48850496	48909682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002050}  [Source:UniProtKB/TrEMBL;Acc:F7I0A8]
ENSCJAG00000007049	KNOWN_BY_PROJECTION	protein_coding	STPG2	chromosome:C_jacchus3.2.1:3:1:190850796:1	95717925	96296026	D	sperm-tail PG-rich repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:28712]
ENSCJAG00000006549	KNOWN_BY_PROJECTION	protein_coding	AVIL	chromosome:C_jacchus3.2.1:9:1:124281992:1	46627584	46646714	R	advillin [Source:HGNC Symbol;Acc:HGNC:14188]
ENSCJAG00000034394	KNOWN_BY_PROJECTION	protein_coding	PSMD2	chromosome:C_jacchus3.2.1:15:1:98464013:1	5910681	5914193	D	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Source:HGNC Symbol;Acc:HGNC:9559]
ENSCJAG00000006600	KNOWN	protein_coding	TSFM	chromosome:C_jacchus3.2.1:9:1:124281992:1	46613278	46627432	D	Elongation factor Ts, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03135}  [Source:UniProtKB/TrEMBL;Acc:F7I1A2]
ENSCJAG00000011840	KNOWN_BY_PROJECTION	protein_coding	PTPRD	chromosome:C_jacchus3.2.1:1:1:210400635:1	110016340	110442952	R	protein tyrosine phosphatase, receptor type, D [Source:HGNC Symbol;Acc:HGNC:9668]
ENSCJAG00000021081	KNOWN_BY_PROJECTION	protein_coding	ST6GAL2	chromosome:C_jacchus3.2.1:14:1:108792865:1	11447847	11532341	R	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 [Source:HGNC Symbol;Acc:HGNC:10861]
ENSCJAG00000033919	NOVEL	pseudogene	ENSCJAG00000033919	chromosome:C_jacchus3.2.1:14:1:108792865:1	11437307	11438631	D	<no descrition>
ENSCJAG00000006478	KNOWN	protein_coding	METTL21B	chromosome:C_jacchus3.2.1:9:1:124281992:1	46602041	46612731	D	Methyltransferase-like protein 21B isoform a {ECO:0000313|EMBL:JAB09569.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011957}  [Source:UniProtKB/TrEMBL;Acc:F7FZB0]
ENSCJAG00000021925	NOVEL	protein_coding	ENSCJAG00000021925	chromosome:C_jacchus3.2.1:14:1:108792865:1	11189349	11189892	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040609}  [Source:UniProtKB/TrEMBL;Acc:F7IGH7]
ENSCJAG00000035482	NOVEL	protein_coding	ENSCJAG00000035482	chromosome:C_jacchus3.2.1:14:1:108792865:1	11149536	11166703	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051478}  [Source:UniProtKB/TrEMBL;Acc:F7AHQ3]
ENSCJAG00000034625	NOVEL	protein_coding	ENSCJAG00000034625	chromosome:C_jacchus3.2.1:14:1:108792865:1	10867597	10890182	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048366}  [Source:UniProtKB/TrEMBL;Acc:F7GE33]
ENSCJAG00000007430	KNOWN_BY_PROJECTION	protein_coding	BPNT1	chromosome:C_jacchus3.2.1:19:1:49578535:1	4584060	4597907	D	3'(2'), 5'-bisphosphate nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:1096]
ENSCJAG00000021706	NOVEL	protein_coding	ENSCJAG00000021706	chromosome:C_jacchus3.2.1:14:1:108792865:1	10746057	10757862	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040419}  [Source:UniProtKB/TrEMBL;Acc:F7IE96]
ENSCJAG00000021708	NOVEL	pseudogene	ENSCJAG00000021708	chromosome:C_jacchus3.2.1:14:1:108792865:1	10818824	10819848	R	<no descrition>
ENSCJAG00000032314	NOVEL	pseudogene	ENSCJAG00000032314	chromosome:C_jacchus3.2.1:14:1:108792865:1	10581986	10583026	D	<no descrition>
ENSCJAG00000011829	NOVEL	protein_coding	ENSCJAG00000011829	chromosome:C_jacchus3.2.1:1:1:210400635:1	109590036	109591535	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021719}  [Source:UniProtKB/TrEMBL;Acc:F6PHM1]
ENSCJAG00000011827	KNOWN	protein_coding	TMEM261	chromosome:C_jacchus3.2.1:1:1:210400635:1	109473747	109475147	R	Transmembrane protein C9orf123 {ECO:0000313|EMBL:JAB21072.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021698}  [Source:UniProtKB/TrEMBL;Acc:F6QCZ8]
ENSCJAG00000001145	KNOWN	protein_coding	VDAC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	48789396	48808253	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002032}; Voltage-dependent anion-selective channel protein 2 isoform 2 {ECO:0000313|EMBL:JAB08952.1}  [Source:UniProtKB/TrEMBL;Acc:F7I2M8]
ENSCJAG00000009409	NOVEL	protein_coding	ENSCJAG00000009409	chromosome:C_jacchus3.2.1:1:1:210400635:1	108862345	108863812	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017222}  [Source:UniProtKB/TrEMBL;Acc:F7I0T9]
ENSCJAG00000015132	KNOWN	protein_coding	ECE2	chromosome:C_jacchus3.2.1:15:1:98464013:1	5846773	5890309	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027961}  [Source:UniProtKB/TrEMBL;Acc:F7HJM9]
ENSCJAG00000015591	KNOWN	protein_coding	TRIM21	chromosome:C_jacchus3.2.1:11:1:130397257:1	67623336	67639492	R	E3 ubiquitin-protein ligase TRIM21 {ECO:0000313|EMBL:JAB04825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028732}  [Source:UniProtKB/TrEMBL;Acc:F7ALH2]
ENSCJAG00000001935	KNOWN	protein_coding	CDAN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	19871728	19885025	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003540}  [Source:UniProtKB/TrEMBL;Acc:F7F0K4]
ENSCJAG00000006615	KNOWN	protein_coding	METTL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	46597650	46601592	R	tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_03055}  [Source:UniProtKB/TrEMBL;Acc:F7G2G6]
ENSCJAG00000015586	NOVEL	pseudogene	ENSCJAG00000015586	chromosome:C_jacchus3.2.1:11:1:130397257:1	67609867	67610985	R	<no descrition>
ENSCJAG00000008073	KNOWN	protein_coding	NCK2	chromosome:C_jacchus3.2.1:14:1:108792865:1	10396835	10548302	D	Cytoplasmic protein NCK2 isoform B {ECO:0000313|EMBL:JAB32457.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047276}  [Source:UniProtKB/TrEMBL;Acc:F7IDI9]
ENSCJAG00000001135	KNOWN	protein_coding	COMTD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	48785062	48787117	D	Catechol O-methyltransferase domain-containing protein 1 {ECO:0000313|EMBL:JAB19078.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001956}  [Source:UniProtKB/TrEMBL;Acc:F6X318]
ENSCJAG00000001119	NOVEL	protein_coding	ENSCJAG00000001119	chromosome:C_jacchus3.2.1:12:1:121768101:1	48624309	48625318	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001923}  [Source:UniProtKB/TrEMBL;Acc:F6XR29]
ENSCJAG00000036175	KNOWN	protein_coding	ENSCJAG00000036175	chromosome:C_jacchus3.2.1:5:1:159171411:1	52829342	52902298	D	Protein NESP55 isoform NESP55 {ECO:0000313|EMBL:JAB22220.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048285}  [Source:UniProtKB/TrEMBL;Acc:F7DQ13]
ENSCJAG00000006652	KNOWN_BY_PROJECTION	protein_coding	CYP27B1	chromosome:C_jacchus3.2.1:9:1:124281992:1	46591371	46596199	R	cytochrome P450, family 27, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2606]
ENSCJAG00000001688	KNOWN	protein_coding	HLA-DRA	chromosome:C_jacchus3.2.1:4:1:171630274:1	33010644	33015717	D	Callithrix jacchus major histocompatibility complex, class II, DR alpha (CAJA-DRA), mRNA. [Source:RefSeq mRNA;Acc:NM_001270911]
ENSCJAG00000006688	KNOWN_BY_PROJECTION	protein_coding	MARCH9	chromosome:C_jacchus3.2.1:9:1:124281992:1	46583611	46588470	D	membrane-associated ring finger (C3HC4) 9 [Source:HGNC Symbol;Acc:HGNC:25139]
ENSCJAG00000018978	NOVEL	protein_coding	ENSCJAG00000018978	chromosome:C_jacchus3.2.1:5:1:159171411:1	52718023	52718605	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035248}  [Source:UniProtKB/TrEMBL;Acc:F7IKJ7]
ENSCJAG00000015511	KNOWN	protein_coding	RRM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	67402503	67496176	D	Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}  [Source:UniProtKB/TrEMBL;Acc:F6ZKF5]
ENSCJAG00000001120	KNOWN_BY_PROJECTION	protein_coding	ZNF503	chromosome:C_jacchus3.2.1:12:1:121768101:1	48624116	48628456	D	zinc finger protein 503 [Source:HGNC Symbol;Acc:HGNC:23589]
ENSCJAG00000001116	NOVEL	protein_coding	ENSCJAG00000001116	chromosome:C_jacchus3.2.1:12:1:121768101:1	48618227	48622615	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001922}  [Source:UniProtKB/TrEMBL;Acc:F6XR40]
ENSCJAG00000001111	KNOWN_BY_PROJECTION	protein_coding	C10orf11	chromosome:C_jacchus3.2.1:12:1:121768101:1	47465067	47982798	R	chromosome 10 open reading frame 11 [Source:HGNC Symbol;Acc:HGNC:23405]
ENSCJAG00000008087	KNOWN_BY_PROJECTION	protein_coding	FHL2	chromosome:C_jacchus3.2.1:14:1:108792865:1	10014953	10096751	R	four and a half LIM domains 2 [Source:HGNC Symbol;Acc:HGNC:3703]
ENSCJAG00000015172	KNOWN	protein_coding	ALG3	chromosome:C_jacchus3.2.1:15:1:98464013:1	5839449	5846075	R	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase isoform a {ECO:0000313|EMBL:JAB06892.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028028}  [Source:UniProtKB/TrEMBL;Acc:F6WW78]
ENSCJAG00000011310	KNOWN_BY_PROJECTION	protein_coding	RAB3GAP2	chromosome:C_jacchus3.2.1:19:1:49578535:1	4381606	4496824	D	RAB3 GTPase activating protein subunit 2 (non-catalytic) [Source:HGNC Symbol;Acc:HGNC:17168]
ENSCJAG00000015495	KNOWN_BY_PROJECTION	protein_coding	STIM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	67377659	67444718	D	stromal interaction molecule 1 [Source:HGNC Symbol;Acc:HGNC:11386]
ENSCJAG00000015206	KNOWN_BY_PROJECTION	protein_coding	VWA5B2	chromosome:C_jacchus3.2.1:15:1:98464013:1	5827408	5839186	D	von Willebrand factor A domain containing 5B2 [Source:HGNC Symbol;Acc:HGNC:25144]
ENSCJAG00000015487	KNOWN	protein_coding	ENSCJAG00000015487	chromosome:C_jacchus3.2.1:11:1:130397257:1	67154051	67169204	R	Rho-related GTP-binding protein RhoG {ECO:0000313|EMBL:JAB06708.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028519}  [Source:UniProtKB/TrEMBL;Acc:F7BPA4]
ENSCJAG00000033557	NOVEL	protein_coding	ENSCJAG00000033557	chromosome:C_jacchus3.2.1:15:1:98464013:1	5801217	5802239	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018721}  [Source:UniProtKB/TrEMBL;Acc:F7EPY1]
ENSCJAG00000001912	KNOWN	protein_coding	TTBK2	chromosome:C_jacchus3.2.1:10:1:132174527:1	19825009	20056941	R	Tau-tubulin kinase 2 {ECO:0000313|EMBL:JAB18974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003455}  [Source:UniProtKB/TrEMBL;Acc:F7GUR5]
ENSCJAG00000007058	KNOWN_BY_PROJECTION	protein_coding	RAP1GDS1	chromosome:C_jacchus3.2.1:3:1:190850796:1	95347077	95565986	R	RAP1, GTP-GDP dissociation stimulator 1 [Source:HGNC Symbol;Acc:HGNC:9859]
ENSCJAG00000015470	KNOWN_BY_PROJECTION	protein_coding	PGAP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	67123499	67153394	D	post-GPI attachment to proteins 2 [Source:HGNC Symbol;Acc:HGNC:17893]
ENSCJAG00000020646	NOVEL	pseudogene	ENSCJAG00000020646	chromosome:C_jacchus3.2.1:19:1:49578535:1	4357339	4357889	D	<no descrition>
ENSCJAG00000012959	KNOWN	protein_coding	ABCF3	chromosome:C_jacchus3.2.1:15:1:98464013:1	5785570	5794312	D	ATP-binding cassette sub-family F member 3 {ECO:0000313|EMBL:JAB03332.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023827}  [Source:UniProtKB/TrEMBL;Acc:F7D4K0]
ENSCJAG00000020647	NOVEL	protein_coding	ENSCJAG00000020647	chromosome:C_jacchus3.2.1:19:1:49578535:1	4182348	4183294	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038379}  [Source:UniProtKB/TrEMBL;Acc:F7I4M8]
ENSCJAG00000008106	KNOWN	protein_coding	C2ORF49	chromosome:C_jacchus3.2.1:14:1:108792865:1	9990886	9999633	D	Ashwin {ECO:0000313|EMBL:JAB07406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014988}  [Source:UniProtKB/TrEMBL;Acc:F7IQH0]
ENSCJAG00000018995	KNOWN	protein_coding	STX16	chromosome:C_jacchus3.2.1:5:1:159171411:1	52654249	52693288	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042671}  [Source:UniProtKB/TrEMBL;Acc:F6Z6A7]
ENSCJAG00000001722	KNOWN_BY_PROJECTION	protein_coding	BTNL2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32947875	32960688	R	butyrophilin-like 2 (MHC class II associated) [Source:HGNC Symbol;Acc:HGNC:1142]
ENSCJAG00000012998	KNOWN_BY_PROJECTION	protein_coding	AP2M1	chromosome:C_jacchus3.2.1:15:1:98464013:1	5773255	5782454	D	adaptor-related protein complex 2, mu 1 subunit [Source:HGNC Symbol;Acc:HGNC:564]
ENSCJAG00000032961	NOVEL	protein_coding	ENSCJAG00000032961	chromosome:C_jacchus3.2.1:4:1:171630274:1	32899504	32926616	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003128}  [Source:UniProtKB/TrEMBL;Acc:F7DWE6]
ENSCJAG00000019020	NOVEL	pseudogene	ENSCJAG00000019020	chromosome:C_jacchus3.2.1:5:1:159171411:1	52637533	52637770	D	<no descrition>
ENSCJAG00000008126	KNOWN	protein_coding	TGFBRAP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	9924556	9965363	R	Transforming growth factor-beta receptor-associated protein 1 {ECO:0000313|EMBL:JAB05950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015040}  [Source:UniProtKB/TrEMBL;Acc:F7G6V2]
ENSCJAG00000011746	KNOWN	protein_coding	KDM4C	chromosome:C_jacchus3.2.1:1:1:210400635:1	108402949	108823773	D	Lysine-specific demethylase 4C isoform 1 {ECO:0000313|EMBL:JAB06637.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021690}  [Source:UniProtKB/TrEMBL;Acc:F6QD82]
ENSCJAG00000007128	KNOWN	protein_coding	TSPAN5	chromosome:C_jacchus3.2.1:3:1:190850796:1	95123052	95316716	D	Tetraspanin-5 {ECO:0000313|EMBL:JAB06452.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013279}  [Source:UniProtKB/TrEMBL;Acc:F6X7Z8]
ENSCJAG00000001733	KNOWN_BY_PROJECTION	protein_coding	C6orf10	chromosome:C_jacchus3.2.1:4:1:171630274:1	32855299	32856536	R	chromosome 6 open reading frame 10 [Source:HGNC Symbol;Acc:HGNC:13922]
ENSCJAG00000008156	KNOWN	protein_coding	MRPS9	chromosome:C_jacchus3.2.1:14:1:108792865:1	9690152	9756605	D	28S ribosomal protein S9, mitochondrial {ECO:0000313|EMBL:JAB07700.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049023}  [Source:UniProtKB/TrEMBL;Acc:F6YJ32]
ENSCJAG00000020649	KNOWN_BY_PROJECTION	protein_coding	MARK1	chromosome:C_jacchus3.2.1:19:1:49578535:1	3981146	4121640	R	MAP/microtubule affinity-regulating kinase 1 [Source:HGNC Symbol;Acc:HGNC:6896]
ENSCJAG00000007151	KNOWN	protein_coding	EIF4E	chromosome:C_jacchus3.2.1:3:1:190850796:1	94792331	94833170	D	Eukaryotic translation initiation factor 4E isoform 1 {ECO:0000313|EMBL:JAB08657.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013331}  [Source:UniProtKB/TrEMBL;Acc:F7BZU4]
ENSCJAG00000035523	KNOWN_BY_PROJECTION	protein_coding	TMEM182	chromosome:C_jacchus3.2.1:14:1:108792865:1	7327526	7384288	D	transmembrane protein 182 [Source:HGNC Symbol;Acc:HGNC:26391]
ENSCJAG00000008178	KNOWN_BY_PROJECTION	protein_coding	MFSD9	chromosome:C_jacchus3.2.1:14:1:108792865:1	7285075	7303223	R	major facilitator superfamily domain containing 9 [Source:HGNC Symbol;Acc:HGNC:28158]
ENSCJAG00000036850	NOVEL	pseudogene	ENSCJAG00000036850	chromosome:C_jacchus3.2.1:19:1:49578535:1	3917584	3917752	R	<no descrition>
ENSCJAG00000007178	KNOWN	protein_coding	METAP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	94672459	94723538	R	Methionine aminopeptidase 1 {ECO:0000256|HAMAP-Rule:MF_03174}  [Source:UniProtKB/TrEMBL;Acc:F7B092]
ENSCJAG00000018980	KNOWN	protein_coding	NPEPL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	52509510	52715921	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035281}  [Source:UniProtKB/TrEMBL;Acc:F7IFW5]
ENSCJAG00000013060	KNOWN_BY_PROJECTION	protein_coding	DVL3	chromosome:C_jacchus3.2.1:15:1:98464013:1	5761210	5771972	D	dishevelled segment polarity protein 3 [Source:HGNC Symbol;Acc:HGNC:3087]
ENSCJAG00000019021	KNOWN_BY_PROJECTION	protein_coding	APCDD1L	chromosome:C_jacchus3.2.1:5:1:159171411:1	52457984	52511578	R	adenomatosis polyposis coli down-regulated 1-like [Source:HGNC Symbol;Acc:HGNC:26892]
ENSCJAG00000001961	KNOWN_BY_PROJECTION	protein_coding	STARD9	chromosome:C_jacchus3.2.1:10:1:132174527:1	19774991	19867681	D	StAR-related lipid transfer (START) domain containing 9 [Source:HGNC Symbol;Acc:HGNC:19162]
ENSCJAG00000019046	NOVEL	pseudogene	ENSCJAG00000019046	chromosome:C_jacchus3.2.1:5:1:159171411:1	52315590	52316040	D	<no descrition>
ENSCJAG00000019027	KNOWN	protein_coding	VAPB	chromosome:C_jacchus3.2.1:5:1:159171411:1	52415630	52443084	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035352}  [Source:UniProtKB/TrEMBL;Acc:F7HZD7]
ENSCJAG00000019039	KNOWN_BY_PROJECTION	protein_coding	RAB22A	chromosome:C_jacchus3.2.1:5:1:159171411:1	52302066	52357153	D	RAB22A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9764]
ENSCJAG00000006697	KNOWN	protein_coding	CDK4	chromosome:C_jacchus3.2.1:9:1:124281992:1	46575745	46579877	R	Cyclin-dependent kinase 4 {ECO:0000313|EMBL:JAB05312.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012489}  [Source:UniProtKB/TrEMBL;Acc:F7E4R8]
ENSCJAG00000008193	KNOWN	protein_coding	SLC9A2	chromosome:C_jacchus3.2.1:14:1:108792865:1	7176893	7277109	D	Sodium/hydrogen exchanger {ECO:0000256|RuleBase:RU003722}  [Source:UniProtKB/TrEMBL;Acc:F6SCS6]
ENSCJAG00000013108	KNOWN	protein_coding	EIF2B5	chromosome:C_jacchus3.2.1:15:1:98464013:1	5732018	5743610	D	Translation initiation factor eIF-2B subunit epsilon {ECO:0000313|EMBL:JAB06823.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024116}  [Source:UniProtKB/TrEMBL;Acc:F7E6V2]
ENSCJAG00000019047	NOVEL	protein_coding	ENSCJAG00000019047	chromosome:C_jacchus3.2.1:5:1:159171411:1	52223159	52300038	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035394}  [Source:UniProtKB/TrEMBL;Acc:F7HWX3]
ENSCJAG00000013139	KNOWN_BY_PROJECTION	protein_coding	HTR3E	chromosome:C_jacchus3.2.1:15:1:98464013:1	5702229	5714050	D	5-hydroxytryptamine (serotonin) receptor 3E, ionotropic [Source:HGNC Symbol;Acc:HGNC:24005]
ENSCJAG00000019066	KNOWN_BY_PROJECTION	protein_coding	ANKRD60	chromosome:C_jacchus3.2.1:5:1:159171411:1	52209331	52220020	R	ankyrin repeat domain 60 [Source:HGNC Symbol;Acc:HGNC:16217]
ENSCJAG00000008163	KNOWN_BY_PROJECTION	protein_coding	SLC9A4	chromosome:C_jacchus3.2.1:14:1:108792865:1	7033203	7327633	D	solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4 [Source:HGNC Symbol;Acc:HGNC:11077]
ENSCJAG00000017025	NOVEL	protein_coding	ENSCJAG00000017025	chromosome:C_jacchus3.2.1:14:1:108792865:1	6972413	6974748	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015240}  [Source:UniProtKB/TrEMBL;Acc:F7GHX2]
ENSCJAG00000019072	KNOWN_BY_PROJECTION	protein_coding	C20orf85	chromosome:C_jacchus3.2.1:5:1:159171411:1	52130609	52140079	D	chromosome 20 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:16216]
ENSCJAG00000008224	NOVEL	protein_coding	ENSCJAG00000008224	chromosome:C_jacchus3.2.1:14:1:108792865:1	6999827	7000997	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015191}  [Source:UniProtKB/TrEMBL;Acc:F7H5D8]
ENSCJAG00000019078	NOVEL	protein_coding	ENSCJAG00000019078	chromosome:C_jacchus3.2.1:5:1:159171411:1	51913610	51914572	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052363}  [Source:UniProtKB/TrEMBL;Acc:F7INR5]
ENSCJAG00000019082	NOVEL	pseudogene	ENSCJAG00000019082	chromosome:C_jacchus3.2.1:5:1:159171411:1	51906928	51907660	R	<no descrition>
ENSCJAG00000013149	KNOWN_BY_PROJECTION	protein_coding	HTR3C	chromosome:C_jacchus3.2.1:15:1:98464013:1	5658037	5665749	D	5-hydroxytryptamine (serotonin) receptor 3C, ionotropic [Source:HGNC Symbol;Acc:HGNC:24003]
ENSCJAG00000008229	NOVEL	protein_coding	ENSCJAG00000008229	chromosome:C_jacchus3.2.1:14:1:108792865:1	6919767	6989663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031311}  [Source:UniProtKB/TrEMBL;Acc:F7I0X9]
ENSCJAG00000015465	KNOWN_BY_PROJECTION	protein_coding	CHRNA10	chromosome:C_jacchus3.2.1:11:1:130397257:1	66992390	66998935	R	cholinergic receptor, nicotinic, alpha 10 (neuronal) [Source:HGNC Symbol;Acc:HGNC:13800]
ENSCJAG00000019083	KNOWN_BY_PROJECTION	protein_coding	PMEPA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	51631363	51699886	R	prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]
ENSCJAG00000015457	KNOWN	protein_coding	ART1	chromosome:C_jacchus3.2.1:11:1:130397257:1	66975094	66990653	D	GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1 {ECO:0000313|EMBL:JAB34497.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028472}  [Source:UniProtKB/TrEMBL;Acc:F6V2Z6]
ENSCJAG00000011742	NOVEL	pseudogene	ENSCJAG00000011742	chromosome:C_jacchus3.2.1:1:1:210400635:1	108233795	108235684	R	<no descrition>
ENSCJAG00000019094	KNOWN_BY_PROJECTION	protein_coding	ZBP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	51587320	51600967	R	Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]
ENSCJAG00000015454	KNOWN_BY_PROJECTION	protein_coding	ART5	chromosome:C_jacchus3.2.1:11:1:130397257:1	66969563	66973338	R	ADP-ribosyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:24049]
ENSCJAG00000015435	NOVEL	protein_coding	TRPC2	chromosome:C_jacchus3.2.1:11:1:130397257:1	66951440	66968939	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047830}  [Source:UniProtKB/TrEMBL;Acc:F7H287]
ENSCJAG00000001073	KNOWN_BY_PROJECTION	protein_coding	KCNMA1	chromosome:C_jacchus3.2.1:12:1:121768101:1	46376619	47166309	D	potassium channel, calcium activated large conductance subfamily M alpha, member 1 [Source:HGNC Symbol;Acc:HGNC:6284]
ENSCJAG00000032556	NOVEL	protein_coding	ENSCJAG00000032556	chromosome:C_jacchus3.2.1:11:1:130397257:1	66927641	66943038	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042738}  [Source:UniProtKB/TrEMBL;Acc:F6W885]
ENSCJAG00000002316	KNOWN_BY_PROJECTION	protein_coding	RASGRF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	18619869	18770646	R	Ras protein-specific guanine nucleotide-releasing factor 1 [Source:HGNC Symbol;Acc:HGNC:9875]
ENSCJAG00000015418	KNOWN	protein_coding	RNF121	chromosome:C_jacchus3.2.1:11:1:130397257:1	66844199	66920880	R	RING finger protein 121 {ECO:0000313|EMBL:JAB08460.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028422}  [Source:UniProtKB/TrEMBL;Acc:F6WTX2]
ENSCJAG00000036768	KNOWN_BY_PROJECTION	protein_coding	IARS2	chromosome:C_jacchus3.2.1:19:1:49578535:1	3899307	4576797	R	isoleucyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:29685]
ENSCJAG00000013172	KNOWN_BY_PROJECTION	protein_coding	ABCC5	chromosome:C_jacchus3.2.1:15:1:98464013:1	5537509	5629398	R	ATP-binding cassette, sub-family C (CFTR/MRP), member 5 [Source:HGNC Symbol;Acc:HGNC:56]
ENSCJAG00000008262	NOVEL	protein_coding	ENSCJAG00000008262	chromosome:C_jacchus3.2.1:14:1:108792865:1	6827684	6828704	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015260}  [Source:UniProtKB/TrEMBL;Acc:F7G674]
ENSCJAG00000008255	KNOWN_BY_PROJECTION	protein_coding	IL18RAP	chromosome:C_jacchus3.2.1:14:1:108792865:1	6844738	6881441	D	interleukin 18 receptor accessory protein [Source:HGNC Symbol;Acc:HGNC:5989]
ENSCJAG00000035848	NOVEL	pseudogene	ENSCJAG00000035848	chromosome:C_jacchus3.2.1:12:1:121768101:1	46169025	46169172	R	<no descrition>
ENSCJAG00000011661	KNOWN_BY_PROJECTION	protein_coding	GLDC	chromosome:C_jacchus3.2.1:1:1:210400635:1	108174480	108312655	R	glycine dehydrogenase (decarboxylating) [Source:HGNC Symbol;Acc:HGNC:4313]
ENSCJAG00000006760	KNOWN	protein_coding	TSPAN31	chromosome:C_jacchus3.2.1:9:1:124281992:1	46572559	46575739	D	Tetraspanin-31 {ECO:0000313|EMBL:JAB13077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012543}  [Source:UniProtKB/TrEMBL;Acc:F7GXR6]
ENSCJAG00000031315	NOVEL	protein_coding	ENSCJAG00000031315	chromosome:C_jacchus3.2.1:15:1:98464013:1	5508452	5515104	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051018}  [Source:UniProtKB/TrEMBL;Acc:F7CIR9]
ENSCJAG00000006836	NOVEL	protein_coding	ENSCJAG00000006836	chromosome:C_jacchus3.2.1:9:1:124281992:1	46553453	46555270	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012653}  [Source:UniProtKB/TrEMBL;Acc:F6PYV9]
ENSCJAG00000008271	KNOWN_BY_PROJECTION	protein_coding	IL18R1	chromosome:C_jacchus3.2.1:14:1:108792865:1	6769525	6803638	D	interleukin 18 receptor 1 [Source:HGNC Symbol;Acc:HGNC:5988]
ENSCJAG00000008308	KNOWN_BY_PROJECTION	protein_coding	IL1RL1	chromosome:C_jacchus3.2.1:14:1:108792865:1	6737973	6754008	D	interleukin 1 receptor-like 1 [Source:HGNC Symbol;Acc:HGNC:5998]
ENSCJAG00000007198	KNOWN	protein_coding	ADH5	chromosome:C_jacchus3.2.1:3:1:190850796:1	94647141	94664734	D	Alcohol dehydrogenase class-3 {ECO:0000313|EMBL:JAB03258.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013451}  [Source:UniProtKB/TrEMBL;Acc:F6W0V7]
ENSCJAG00000021241	KNOWN	protein_coding	PARL	chromosome:C_jacchus3.2.1:15:1:98464013:1	5445538	5502774	R	Presenilins-associated rhomboid-like protein, mitochondrial isoform 2 preproprotein {ECO:0000313|EMBL:JAB13882.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041983}  [Source:UniProtKB/TrEMBL;Acc:F7G4K1]
ENSCJAG00000011619	KNOWN	protein_coding	UHRF2	chromosome:C_jacchus3.2.1:1:1:210400635:1	108048919	108155826	D	E3 ubiquitin-protein ligase UHRF2 {ECO:0000313|EMBL:JAB08169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021404}  [Source:UniProtKB/TrEMBL;Acc:F6S9E2]
ENSCJAG00000007244	KNOWN_BY_PROJECTION	protein_coding	ADH4	chromosome:C_jacchus3.2.1:3:1:190850796:1	94584742	94613666	D	alcohol dehydrogenase 4 (class II), pi polypeptide [Source:HGNC Symbol;Acc:HGNC:252]
ENSCJAG00000006146	KNOWN_BY_PROJECTION	protein_coding	MARC2	chromosome:C_jacchus3.2.1:19:1:49578535:1	3856165	3886937	R	mitochondrial amidoxime reducing component 2 [Source:HGNC Symbol;Acc:HGNC:26064]
ENSCJAG00000008327	KNOWN_BY_PROJECTION	protein_coding	IL1RL2	chromosome:C_jacchus3.2.1:14:1:108792865:1	6593564	6644571	D	interleukin 1 receptor-like 2 [Source:HGNC Symbol;Acc:HGNC:5999]
ENSCJAG00000011610	KNOWN_BY_PROJECTION	protein_coding	IL33	chromosome:C_jacchus3.2.1:1:1:210400635:1	107914879	107961362	D	interleukin 33 [Source:HGNC Symbol;Acc:HGNC:16028]
ENSCJAG00000006138	KNOWN	protein_coding	MARC1	chromosome:C_jacchus3.2.1:19:1:49578535:1	3823706	3853716	R	MOSC domain-containing protein 1, mitochondrial {ECO:0000313|EMBL:JAB14828.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011305}  [Source:UniProtKB/TrEMBL;Acc:F7IDG4]
ENSCJAG00000021219	KNOWN_BY_PROJECTION	protein_coding	YEATS2	chromosome:C_jacchus3.2.1:15:1:98464013:1	5346224	5432203	D	YEATS domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25489]
ENSCJAG00000035400	NOVEL	protein_coding	ENSCJAG00000035400	chromosome:C_jacchus3.2.1:3:1:190850796:1	94392407	94405267	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048001}  [Source:UniProtKB/TrEMBL;Acc:F7GNH3]
ENSCJAG00000011604	KNOWN	protein_coding	RANBP6	chromosome:C_jacchus3.2.1:1:1:210400635:1	107725451	107730124	R	Ran-binding protein 6 isoform 1 {ECO:0000313|EMBL:JAB11160.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021308}  [Source:UniProtKB/TrEMBL;Acc:F6Q4X4]
ENSCJAG00000031939	NOVEL	protein_coding	ENSCJAG00000031939	chromosome:C_jacchus3.2.1:1:1:210400635:1	107685997	107702230	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042716}  [Source:UniProtKB/TrEMBL;Acc:F6WTT8]
ENSCJAG00000011596	KNOWN	protein_coding	MLANA	chromosome:C_jacchus3.2.1:1:1:210400635:1	107616650	107633532	D	Melanoma antigen recognized by T-cells 1 {ECO:0000313|EMBL:JAB12777.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021297}  [Source:UniProtKB/TrEMBL;Acc:F6QH78]
ENSCJAG00000019098	KNOWN_BY_PROJECTION	protein_coding	PCK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	51536133	51541476	D	phosphoenolpyruvate carboxykinase 1 (soluble) [Source:HGNC Symbol;Acc:HGNC:8724]
ENSCJAG00000001047	KNOWN_BY_PROJECTION	protein_coding	DLG5	chromosome:C_jacchus3.2.1:12:1:121768101:1	46166955	46246410	D	discs, large homolog 5 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:2904]
ENSCJAG00000006110	KNOWN	protein_coding	HLX	chromosome:C_jacchus3.2.1:19:1:49578535:1	3752502	3758199	R	H2.0-like homeobox protein {ECO:0000313|EMBL:JAB06558.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011252}  [Source:UniProtKB/TrEMBL;Acc:F7IQA7]
ENSCJAG00000021216	KNOWN	protein_coding	KLHL24	chromosome:C_jacchus3.2.1:15:1:98464013:1	5270974	5317673	D	Kelch-like protein 24 {ECO:0000313|EMBL:JAB10748.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039513}  [Source:UniProtKB/TrEMBL;Acc:F7DUL3]
ENSCJAG00000007773	NOVEL	protein_coding	ENSCJAG00000007773	chromosome:C_jacchus3.2.1:19:1:49578535:1	3001913	3014801	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014396}  [Source:UniProtKB/TrEMBL;Acc:F7I736]
ENSCJAG00000021212	KNOWN_BY_PROJECTION	protein_coding	KLHL6	chromosome:C_jacchus3.2.1:15:1:98464013:1	5145845	5208652	R	kelch-like family member 6 [Source:HGNC Symbol;Acc:HGNC:18653]
ENSCJAG00000013314	NOVEL	pseudogene	ENSCJAG00000013314	chromosome:C_jacchus3.2.1:19:1:49578535:1	2989455	2989657	D	<no descrition>
ENSCJAG00000021210	NOVEL	protein_coding	ENSCJAG00000021210	chromosome:C_jacchus3.2.1:15:1:98464013:1	4950830	4951637	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039494}  [Source:UniProtKB/TrEMBL;Acc:F7FDQ8]
ENSCJAG00000021723	KNOWN	protein_coding	B3GNT5	chromosome:C_jacchus3.2.1:15:1:98464013:1	4925402	4945847	D	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase {ECO:0000313|EMBL:JAB04989.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043237}  [Source:UniProtKB/TrEMBL;Acc:F7IAI1]
ENSCJAG00000019109	KNOWN_BY_PROJECTION	protein_coding	CTCFL	chromosome:C_jacchus3.2.1:5:1:159171411:1	51466588	51496907	R	CCCTC-binding factor (zinc finger protein)-like [Source:HGNC Symbol;Acc:HGNC:16234]
ENSCJAG00000015102	NOVEL	protein_coding	ENSCJAG00000015102	chromosome:C_jacchus3.2.1:3:1:190850796:1	94307436	94443447	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033748}  [Source:UniProtKB/TrEMBL;Acc:F6T443]
ENSCJAG00000019139	KNOWN_BY_PROJECTION	protein_coding	RBM38	chromosome:C_jacchus3.2.1:5:1:159171411:1	51363357	51381534	D	RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818]
ENSCJAG00000021205	KNOWN_BY_PROJECTION	protein_coding	MCF2L2	chromosome:C_jacchus3.2.1:15:1:98464013:1	4864180	5100363	R	MCF.2 cell line derived transforming sequence-like 2 [Source:HGNC Symbol;Acc:HGNC:30319]
ENSCJAG00000001787	KNOWN_BY_PROJECTION	protein_coding	NOTCH4	chromosome:C_jacchus3.2.1:4:1:171630274:1	32773679	32801380	R	notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
ENSCJAG00000019142	NOVEL	protein_coding	ENSCJAG00000019142	chromosome:C_jacchus3.2.1:5:1:159171411:1	51349544	51364967	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035528}  [Source:UniProtKB/TrEMBL;Acc:F7I6A4]
ENSCJAG00000034974	NOVEL	protein_coding	ENSCJAG00000034974	chromosome:C_jacchus3.2.1:15:1:98464013:1	4818295	4837743	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051416}  [Source:UniProtKB/TrEMBL;Acc:F7CG44]
ENSCJAG00000006086	KNOWN	protein_coding	DUSP10	chromosome:C_jacchus3.2.1:19:1:49578535:1	2915624	3128974	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046557}  [Source:UniProtKB/TrEMBL;Acc:F7I3Q8]
ENSCJAG00000005094	KNOWN_BY_PROJECTION	protein_coding	LAMP3	chromosome:C_jacchus3.2.1:15:1:98464013:1	4783859	4826119	R	lysosomal-associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]
ENSCJAG00000032517	NOVEL	protein_coding	ENSCJAG00000032517	chromosome:C_jacchus3.2.1:19:1:49578535:1	2177884	2191677	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048942}  [Source:UniProtKB/TrEMBL;Acc:F6QHU3]
ENSCJAG00000015332	KNOWN	protein_coding	NUP98	chromosome:C_jacchus3.2.1:11:1:130397257:1	66842964	67123328	R	Nuclear pore complex protein Nup98-Nup96 isoform 1 {ECO:0000313|EMBL:JAB07896.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028362}  [Source:UniProtKB/TrEMBL;Acc:F6ZP55]
ENSCJAG00000001882	KNOWN	protein_coding	GPSM3	chromosome:C_jacchus3.2.1:4:1:171630274:1	32768239	32770361	R	G-protein-signaling modulator 3 {ECO:0000313|EMBL:JAB04194.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003378}  [Source:UniProtKB/TrEMBL;Acc:F7DUX9]
ENSCJAG00000021247	NOVEL	protein_coding	ENSCJAG00000021247	chromosome:C_jacchus3.2.1:19:1:49578535:1	2128494	2168603	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048493}  [Source:UniProtKB/TrEMBL;Acc:F7H8B8]
ENSCJAG00000006784	KNOWN	protein_coding	AGAP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	46552386	46569046	R	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform PIKE-L {ECO:0000313|EMBL:JAB33563.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012646}  [Source:UniProtKB/TrEMBL;Acc:F6PZR2]
ENSCJAG00000008354	KNOWN	protein_coding	IL1R1	chromosome:C_jacchus3.2.1:14:1:108792865:1	6553708	6577981	D	Interleukin-1 receptor type 1 {ECO:0000313|EMBL:JAB18492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015437}  [Source:UniProtKB/TrEMBL;Acc:F7GUP6]
ENSCJAG00000005103	KNOWN_BY_PROJECTION	protein_coding	MCCC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	4682626	4769186	R	methylcrotonoyl-CoA carboxylase 1 (alpha) [Source:HGNC Symbol;Acc:HGNC:6936]
ENSCJAG00000008398	NOVEL	pseudogene	ENSCJAG00000008398	chromosome:C_jacchus3.2.1:14:1:108792865:1	6520711	6521008	D	<no descrition>
ENSCJAG00000008399	KNOWN_BY_PROJECTION	protein_coding	IL1R2	chromosome:C_jacchus3.2.1:14:1:108792865:1	6383432	6417950	D	interleukin 1 receptor, type II [Source:HGNC Symbol;Acc:HGNC:5994]
ENSCJAG00000019147	KNOWN	protein_coding	RAE1	chromosome:C_jacchus3.2.1:5:1:159171411:1	51319091	51342453	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035561}; mRNA export factor {ECO:0000313|EMBL:JAB03801.1}  [Source:UniProtKB/TrEMBL;Acc:F7EGR4]
ENSCJAG00000008420	NOVEL	pseudogene	ENSCJAG00000008420	chromosome:C_jacchus3.2.1:14:1:108792865:1	6286583	6287177	D	<no descrition>
ENSCJAG00000006501	KNOWN_BY_PROJECTION	protein_coding	AIDA	chromosome:C_jacchus3.2.1:19:1:49578535:1	2084079	2124005	D	axin interactor, dorsalization associated [Source:HGNC Symbol;Acc:HGNC:25761]
ENSCJAG00000015324	KNOWN_BY_PROJECTION	protein_coding	IL18BP	chromosome:C_jacchus3.2.1:11:1:130397257:1	66839010	66841982	R	interleukin 18 binding protein [Source:HGNC Symbol;Acc:HGNC:5987]
ENSCJAG00000005148	KNOWN	protein_coding	DCUN1D1	chromosome:C_jacchus3.2.1:15:1:98464013:1	4604688	4638636	R	DCN1-like protein {ECO:0000256|RuleBase:RU410713}  [Source:UniProtKB/TrEMBL;Acc:F7GC56]
ENSCJAG00000002305	KNOWN	protein_coding	CTSH	chromosome:C_jacchus3.2.1:10:1:132174527:1	18573481	18595816	R	Pro-cathepsin H preproprotein {ECO:0000313|EMBL:JAB05752.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004170}  [Source:UniProtKB/TrEMBL;Acc:F7B939]
ENSCJAG00000019163	KNOWN_BY_PROJECTION	protein_coding	SPO11	chromosome:C_jacchus3.2.1:5:1:159171411:1	51299803	51313701	D	SPO11 meiotic protein covalently bound to DSB [Source:HGNC Symbol;Acc:HGNC:11250]
ENSCJAG00000011528	KNOWN	protein_coding	ERMP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	107493835	107568939	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021286}  [Source:UniProtKB/TrEMBL;Acc:F6QSJ7]
ENSCJAG00000001015	KNOWN	protein_coding	POLR3A	chromosome:C_jacchus3.2.1:12:1:121768101:1	46002735	46057348	D	DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}  [Source:UniProtKB/TrEMBL;Acc:F6WHF1]
ENSCJAG00000005176	KNOWN	protein_coding	ATP11B	chromosome:C_jacchus3.2.1:15:1:98464013:1	4479117	4576388	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009587}  [Source:UniProtKB/TrEMBL;Acc:F7H2B2]
ENSCJAG00000019172	KNOWN	protein_coding	BMP7	chromosome:C_jacchus3.2.1:5:1:159171411:1	51137612	51234116	R	Bone morphogenetic protein 7 {ECO:0000313|EMBL:JAB03325.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035590}  [Source:UniProtKB/TrEMBL;Acc:F7E3W1]
ENSCJAG00000034856	NOVEL	protein_coding	ENSCJAG00000034856	chromosome:C_jacchus3.2.1:15:1:98464013:1	4143377	4144077	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048161}  [Source:UniProtKB/TrEMBL;Acc:F7H3J7]
ENSCJAG00000008405	NOVEL	protein_coding	ENSCJAG00000008405	chromosome:C_jacchus3.2.1:15:1:98464013:1	3215289	3216025	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015461}  [Source:UniProtKB/TrEMBL;Acc:F7GHB3]
ENSCJAG00000008401	KNOWN	protein_coding	SOX2	chromosome:C_jacchus3.2.1:15:1:98464013:1	3410766	3412178	D	Transcription factor SOX-2 {ECO:0000313|EMBL:JAB30268.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047836}  [Source:UniProtKB/TrEMBL;Acc:F7H274]
ENSCJAG00000022411	NOVEL	protein_coding	ENSCJAG00000022411	chromosome:C_jacchus3.2.1:1:1:210400635:1	107483233	107646584	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041033}  [Source:UniProtKB/TrEMBL;Acc:F7FGT9]
ENSCJAG00000012795	KNOWN	protein_coding	ENSCJAG00000012795	chromosome:C_jacchus3.2.1:15:1:98464013:1	2676197	2682733	R	Mitochondrial import inner membrane translocase subunit TIM14 isoform 1 {ECO:0000313|EMBL:JAB07603.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005628}  [Source:UniProtKB/TrEMBL;Acc:F7I2W3]
ENSCJAG00000001886	KNOWN	protein_coding	PBX2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32763543	32767636	R	Pre-B-cell leukemia transcription factor 2 {ECO:0000313|EMBL:JAB11282.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003408}  [Source:UniProtKB/TrEMBL;Acc:F7H4W5]
ENSCJAG00000006530	KNOWN	protein_coding	BROX	chromosome:C_jacchus3.2.1:19:1:49578535:1	2063689	2084012	R	BRO1 domain-containing protein BROX {ECO:0000313|EMBL:JAB04266.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012157}  [Source:UniProtKB/TrEMBL;Acc:F7DRP4]
ENSCJAG00000012802	KNOWN_BY_PROJECTION	protein_coding	FXR1	chromosome:C_jacchus3.2.1:15:1:98464013:1	2602355	2669499	D	fragile X mental retardation, autosomal homolog 1 [Source:HGNC Symbol;Acc:HGNC:4023]
ENSCJAG00000001948	NOVEL	protein_coding	ENSCJAG00000001948	chromosome:C_jacchus3.2.1:4:1:171630274:1	32755248	32761437	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003531}  [Source:UniProtKB/TrEMBL;Acc:F7F0S5]
ENSCJAG00000034346	KNOWN_BY_PROJECTION	protein_coding	ADH7	chromosome:C_jacchus3.2.1:3:1:190850796:1	94249142	94267024	D	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide [Source:HGNC Symbol;Acc:HGNC:256]
ENSCJAG00000015253	KNOWN_BY_PROJECTION	protein_coding	NUMA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	66803874	66838048	D	nuclear mitotic apparatus protein 1 [Source:HGNC Symbol;Acc:HGNC:8059]
ENSCJAG00000011343	KNOWN	protein_coding	TFAP2C	chromosome:C_jacchus3.2.1:5:1:159171411:1	50627140	50636265	D	Transcription factor AP-2 gamma {ECO:0000313|EMBL:JAB07111.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020891}  [Source:UniProtKB/TrEMBL;Acc:F7CZ55]
ENSCJAG00000011338	NOVEL	protein_coding	ENSCJAG00000011338	chromosome:C_jacchus3.2.1:5:1:159171411:1	50526253	50527854	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020854}  [Source:UniProtKB/TrEMBL;Acc:F7ECB4]
ENSCJAG00000015119	KNOWN_BY_PROJECTION	protein_coding	C4orf17	chromosome:C_jacchus3.2.1:3:1:190850796:1	94145860	94183186	R	chromosome 4 open reading frame 17 [Source:HGNC Symbol;Acc:HGNC:25274]
ENSCJAG00000011336	KNOWN_BY_PROJECTION	protein_coding	GCNT7	chromosome:C_jacchus3.2.1:5:1:159171411:1	50491813	50515169	R	glucosaminyl (N-acetyl) transferase family member 7 [Source:HGNC Symbol;Acc:HGNC:16099]
ENSCJAG00000012901	KNOWN_BY_PROJECTION	protein_coding	CCDC39	chromosome:C_jacchus3.2.1:15:1:98464013:1	2262573	2337777	R	coiled-coil domain containing 39 [Source:HGNC Symbol;Acc:HGNC:25244]
ENSCJAG00000006594	KNOWN_BY_PROJECTION	protein_coding	DISP1	chromosome:C_jacchus3.2.1:19:1:49578535:1	1816612	1893281	R	dispatched homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19711]
ENSCJAG00000022060	KNOWN_BY_PROJECTION	protein_coding	TLR5	chromosome:C_jacchus3.2.1:19:1:49578535:1	1687070	1710578	D	toll-like receptor 5 [Source:HGNC Symbol;Acc:HGNC:11851]
ENSCJAG00000000976	KNOWN_BY_PROJECTION	protein_coding	ZMIZ1	chromosome:C_jacchus3.2.1:12:1:121768101:1	44679468	44783739	R	zinc finger, MIZ-type containing 1 [Source:HGNC Symbol;Acc:HGNC:16493]
ENSCJAG00000008424	KNOWN	protein_coding	MAP4K4	chromosome:C_jacchus3.2.1:14:1:108792865:1	6084582	6285197	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004380}  [Source:UniProtKB/TrEMBL;Acc:F7APA0]
ENSCJAG00000011308	KNOWN	protein_coding	RTFDC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	50465657	50520990	D	UPF0549 protein C20orf43 {ECO:0000313|EMBL:JAB07953.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043895}  [Source:UniProtKB/TrEMBL;Acc:F7I571]
ENSCJAG00000012923	KNOWN_BY_PROJECTION	protein_coding	TTC14	chromosome:C_jacchus3.2.1:15:1:98464013:1	2250616	2259906	D	tetratricopeptide repeat domain 14 [Source:HGNC Symbol;Acc:HGNC:24697]
ENSCJAG00000035309	NOVEL	protein_coding	ENSCJAG00000035309	chromosome:C_jacchus3.2.1:15:1:98464013:1	1946341	1947786	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043804}  [Source:UniProtKB/TrEMBL;Acc:F7IH44]
ENSCJAG00000015138	KNOWN_BY_PROJECTION	protein_coding	TRMT10A	chromosome:C_jacchus3.2.1:3:1:190850796:1	94128625	94139523	D	tRNA methyltransferase 10 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28403]
ENSCJAG00000015249	KNOWN_BY_PROJECTION	protein_coding	LRTOMT	chromosome:C_jacchus3.2.1:11:1:130397257:1	66726829	66729521	R	leucine rich transmembrane and O-methyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:25033]
ENSCJAG00000012957	KNOWN	protein_coding	PEX5L	chromosome:C_jacchus3.2.1:15:1:98464013:1	1433396	1679372	R	PEX5-related protein isoform 3 {ECO:0000313|EMBL:JAB28967.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023816}  [Source:UniProtKB/TrEMBL;Acc:F7D537]
ENSCJAG00000011447	KNOWN	protein_coding	KIAA1432	chromosome:C_jacchus3.2.1:1:1:210400635:1	107371576	107505391	D	Protein RIC1 homolog isoform a {ECO:0000313|EMBL:JAB05461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021179}  [Source:UniProtKB/TrEMBL;Acc:F6SB26]
ENSCJAG00000021246	KNOWN_BY_PROJECTION	protein_coding	CREG2	chromosome:C_jacchus3.2.1:14:1:108792865:1	5734792	5776145	R	cellular repressor of E1A-stimulated genes 2 [Source:HGNC Symbol;Acc:HGNC:14272]
ENSCJAG00000021248	NOVEL	protein_coding	ENSCJAG00000021248	chromosome:C_jacchus3.2.1:14:1:108792865:1	5788865	5791010	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039549}  [Source:UniProtKB/TrEMBL;Acc:F7CUJ3]
ENSCJAG00000000973	KNOWN_BY_PROJECTION	protein_coding	PPIF	chromosome:C_jacchus3.2.1:12:1:121768101:1	44633608	44641133	R	peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:HGNC:9259]
ENSCJAG00000021239	KNOWN	protein_coding	RNF149	chromosome:C_jacchus3.2.1:14:1:108792865:1	5662745	5695521	R	E3 ubiquitin-protein ligase RNF149 {ECO:0000313|EMBL:JAB04547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039544}  [Source:UniProtKB/TrEMBL;Acc:F7CUN4]
ENSCJAG00000011299	KNOWN_BY_PROJECTION	protein_coding	CASS4	chromosome:C_jacchus3.2.1:5:1:159171411:1	50411748	50455834	D	Cas scaffolding protein family member 4 [Source:HGNC Symbol;Acc:HGNC:15878]
ENSCJAG00000015246	NOVEL	protein_coding	ENSCJAG00000015246	chromosome:C_jacchus3.2.1:11:1:130397257:1	66723957	66726105	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028095}  [Source:UniProtKB/TrEMBL;Acc:F6UJD7]
ENSCJAG00000021236	NOVEL	protein_coding	ENSCJAG00000021236	chromosome:C_jacchus3.2.1:14:1:108792865:1	5661706	5662275	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039535}  [Source:UniProtKB/TrEMBL;Acc:F7DD04]
ENSCJAG00000011442	KNOWN	protein_coding	ENSCJAG00000011442	chromosome:C_jacchus3.2.1:1:1:210400635:1	107357343	107361849	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021042}  [Source:UniProtKB/TrEMBL;Acc:F6PLJ8]
ENSCJAG00000012999	KNOWN	protein_coding	USP13	chromosome:C_jacchus3.2.1:15:1:98464013:1	1297419	1420923	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7H7I8]
ENSCJAG00000015231	KNOWN_BY_PROJECTION	protein_coding	FOLR3	chromosome:C_jacchus3.2.1:11:1:130397257:1	66672890	66674507	R	folate receptor 3 (gamma) [Source:HGNC Symbol;Acc:HGNC:3795]
ENSCJAG00000013015	KNOWN	protein_coding	ENSCJAG00000013015	chromosome:C_jacchus3.2.1:15:1:98464013:1	1246736	1268727	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023901}  [Source:UniProtKB/TrEMBL;Acc:F7GLC1]
ENSCJAG00000013031	NOVEL	protein_coding	ENSCJAG00000013031	chromosome:C_jacchus3.2.1:15:1:98464013:1	1232866	1234514	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023920}  [Source:UniProtKB/TrEMBL;Acc:F7GBC5]
ENSCJAG00000015239	NOVEL	protein_coding	ENSCJAG00000015239	chromosome:C_jacchus3.2.1:11:1:130397257:1	66672694	66702892	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028086}  [Source:UniProtKB/TrEMBL;Acc:F6UJV0]
ENSCJAG00000001854	KNOWN_BY_PROJECTION	protein_coding	AGPAT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32745043	32754889	R	1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:324]
ENSCJAG00000013871	KNOWN	protein_coding	SUSD4	chromosome:C_jacchus3.2.1:19:1:49578535:1	1450294	1597032	D	Sushi domain-containing protein 4 isoform a {ECO:0000313|EMBL:JAB27174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021815}  [Source:UniProtKB/TrEMBL;Acc:F6S576]
ENSCJAG00000013028	KNOWN	protein_coding	MRPL47	chromosome:C_jacchus3.2.1:15:1:98464013:1	1225668	1246569	R	39S ribosomal protein L47, mitochondrial isoform a {ECO:0000313|EMBL:JAB05430.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023911}  [Source:UniProtKB/TrEMBL;Acc:F7GBP5]
ENSCJAG00000015224	KNOWN	protein_coding	FOLR1	chromosome:C_jacchus3.2.1:11:1:130397257:1	66649806	66659317	R	Folate receptor alpha {ECO:0000313|EMBL:JAB02337.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028067}  [Source:UniProtKB/TrEMBL;Acc:F6V730]
ENSCJAG00000006838	KNOWN	protein_coding	OS9	chromosome:C_jacchus3.2.1:9:1:124281992:1	46520432	46548646	D	Protein OS-9 isoform 2 {ECO:0000313|EMBL:JAB08807.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012700}  [Source:UniProtKB/TrEMBL;Acc:F6SE03]
ENSCJAG00000021229	KNOWN_BY_PROJECTION	protein_coding	CNOT11	chromosome:C_jacchus3.2.1:14:1:108792865:1	5639588	5656007	D	CCR4-NOT transcription complex, subunit 11 [Source:HGNC Symbol;Acc:HGNC:25217]
ENSCJAG00000021227	NOVEL	protein_coding	ENSCJAG00000021227	chromosome:C_jacchus3.2.1:14:1:108792865:1	5637457	5637977	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039526}  [Source:UniProtKB/TrEMBL;Acc:F7DDN2]
ENSCJAG00000021752	NOVEL	pseudogene	ENSCJAG00000021752	chromosome:C_jacchus3.2.1:14:1:108792865:1	5633944	5635863	R	<no descrition>
ENSCJAG00000015212	KNOWN	protein_coding	FOLR2	chromosome:C_jacchus3.2.1:11:1:130397257:1	66629983	66635343	R	Folate receptor beta {ECO:0000313|EMBL:JAB16289.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028051}  [Source:UniProtKB/TrEMBL;Acc:F6VRR1]
ENSCJAG00000021224	NOVEL	pseudogene	ENSCJAG00000021224	chromosome:C_jacchus3.2.1:14:1:108792865:1	5600547	5601302	R	<no descrition>
ENSCJAG00000021221	NOVEL	pseudogene	ENSCJAG00000021221	chromosome:C_jacchus3.2.1:14:1:108792865:1	5524372	5525702	R	<no descrition>
ENSCJAG00000032675	NOVEL	protein_coding	ENSCJAG00000032675	chromosome:C_jacchus3.2.1:14:1:108792865:1	5568961	5578827	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046896}  [Source:UniProtKB/TrEMBL;Acc:F7IK00]
ENSCJAG00000021220	NOVEL	pseudogene	ENSCJAG00000021220	chromosome:C_jacchus3.2.1:14:1:108792865:1	5432288	5432751	D	<no descrition>
ENSCJAG00000011422	KNOWN_BY_PROJECTION	protein_coding	PDCD1LG2	chromosome:C_jacchus3.2.1:1:1:210400635:1	107255404	107300353	D	programmed cell death 1 ligand 2 [Source:HGNC Symbol;Acc:HGNC:18731]
ENSCJAG00000013868	KNOWN_BY_PROJECTION	protein_coding	CCDC185	chromosome:C_jacchus3.2.1:19:1:49578535:1	1428918	1430762	R	coiled-coil domain containing 185 [Source:HGNC Symbol;Acc:HGNC:26654]
ENSCJAG00000011281	KNOWN	protein_coding	CSTF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	50392377	50403220	D	Cleavage stimulation factor subunit 1 {ECO:0000313|EMBL:JAB09384.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020780}  [Source:UniProtKB/TrEMBL;Acc:F7GJ78]
ENSCJAG00000013036	KNOWN	protein_coding	ACTL6A	chromosome:C_jacchus3.2.1:15:1:98464013:1	1200891	1225597	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024094}  [Source:UniProtKB/TrEMBL;Acc:F7FQX1]
ENSCJAG00000015191	KNOWN_BY_PROJECTION	protein_coding	INPPL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	66611519	66622994	R	inositol polyphosphate phosphatase-like 1 [Source:HGNC Symbol;Acc:HGNC:6080]
ENSCJAG00000011266	KNOWN	protein_coding	AURKA	chromosome:C_jacchus3.2.1:5:1:159171411:1	50371029	50392156	R	Aurora kinase A {ECO:0000313|EMBL:JAB36373.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020758}  [Source:UniProtKB/TrEMBL;Acc:F7GVV3]
ENSCJAG00000019609	NOVEL	pseudogene	ENSCJAG00000019609	chromosome:C_jacchus3.2.1:9:1:124281992:1	46503927	46505048	D	<no descrition>
ENSCJAG00000006898	NOVEL	pseudogene	ENSCJAG00000006898	chromosome:C_jacchus3.2.1:9:1:124281992:1	46493025	46493628	D	<no descrition>
ENSCJAG00000021215	KNOWN_BY_PROJECTION	protein_coding	TBC1D8	chromosome:C_jacchus3.2.1:14:1:108792865:1	5345469	5486877	R	TBC1 domain family, member 8 (with GRAM domain) [Source:HGNC Symbol;Acc:HGNC:17791]
ENSCJAG00000013128	NOVEL	pseudogene	ENSCJAG00000013128	chromosome:C_jacchus3.2.1:15:1:98464013:1	1135381	1136412	D	<no descrition>
ENSCJAG00000011258	KNOWN_BY_PROJECTION	protein_coding	FAM210B	chromosome:C_jacchus3.2.1:5:1:159171411:1	50360557	50370176	D	family with sequence similarity 210, member B [Source:HGNC Symbol;Acc:HGNC:16102]
ENSCJAG00000006905	KNOWN_BY_PROJECTION	protein_coding	B4GALNT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	46458608	46463676	R	beta-1,4-N-acetyl-galactosaminyl transferase 1 [Source:HGNC Symbol;Acc:HGNC:4117]
ENSCJAG00000015188	KNOWN_BY_PROJECTION	protein_coding	PHOX2A	chromosome:C_jacchus3.2.1:11:1:130397257:1	66604567	66608955	D	paired-like homeobox 2a [Source:HGNC Symbol;Acc:HGNC:691]
ENSCJAG00000015187	NOVEL	protein_coding	ENSCJAG00000015187	chromosome:C_jacchus3.2.1:11:1:130397257:1	66587592	66588529	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027988}  [Source:UniProtKB/TrEMBL;Acc:F7H9B3]
ENSCJAG00000011249	NOVEL	pseudogene	ENSCJAG00000011249	chromosome:C_jacchus3.2.1:5:1:159171411:1	50252417	50253501	D	<no descrition>
ENSCJAG00000013134	KNOWN	protein_coding	GNB4	chromosome:C_jacchus3.2.1:15:1:98464013:1	1047452	1101633	R	Guanine nucleotide-binding protein subunit beta-4 {ECO:0000313|EMBL:JAB02847.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024139}  [Source:UniProtKB/TrEMBL;Acc:F7DRF8]
ENSCJAG00000013153	NOVEL	pseudogene	ENSCJAG00000013153	chromosome:C_jacchus3.2.1:15:1:98464013:1	1042112	1042809	R	<no descrition>
ENSCJAG00000008270	KNOWN	protein_coding	CAPN8	chromosome:C_jacchus3.2.1:19:1:49578535:1	1228886	1291522	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019590}  [Source:UniProtKB/TrEMBL;Acc:F6Q180]
ENSCJAG00000019399	NOVEL	protein_coding	ENSCJAG00000019399	chromosome:C_jacchus3.2.1:12:1:121768101:1	44497597	44502048	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036030}  [Source:UniProtKB/TrEMBL;Acc:F7GNC0]
ENSCJAG00000021214	KNOWN_BY_PROJECTION	protein_coding	RPL31	chromosome:C_jacchus3.2.1:14:1:108792865:1	5338409	5354394	D	ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
ENSCJAG00000010828	NOVEL	protein_coding	ENSCJAG00000010828	chromosome:C_jacchus3.2.1:12:1:121768101:1	44484678	44487447	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019951}  [Source:UniProtKB/TrEMBL;Acc:F6Z8I1]
ENSCJAG00000018197	NOVEL	protein_coding	ENSCJAG00000018197	chromosome:C_jacchus3.2.1:12:1:121768101:1	44402527	44405198	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033653}  [Source:UniProtKB/TrEMBL;Acc:F6QPE6]
ENSCJAG00000015121	KNOWN	protein_coding	CLPB	chromosome:C_jacchus3.2.1:11:1:130397257:1	66390299	66544532	D	Caseinolytic peptidase B protein homolog isoform 2 {ECO:0000313|EMBL:JAB11368.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045259}  [Source:UniProtKB/TrEMBL;Acc:F6QGP2]
ENSCJAG00000018198	NOVEL	protein_coding	ENSCJAG00000018198	chromosome:C_jacchus3.2.1:12:1:121768101:1	44383475	44387436	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033658}  [Source:UniProtKB/TrEMBL;Acc:F6QP69]
ENSCJAG00000007670	KNOWN_BY_PROJECTION	protein_coding	TMEM254	chromosome:C_jacchus3.2.1:12:1:121768101:1	44320173	44334410	R	transmembrane protein 254 [Source:HGNC Symbol;Acc:HGNC:25804]
ENSCJAG00000011242	KNOWN	protein_coding	CBLN4	chromosome:C_jacchus3.2.1:5:1:159171411:1	49981339	49990030	R	Cerebellin-4 {ECO:0000313|EMBL:JAB05311.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020710}  [Source:UniProtKB/TrEMBL;Acc:F7H6F7]
ENSCJAG00000013155	KNOWN	protein_coding	MFN1	chromosome:C_jacchus3.2.1:15:1:98464013:1	993678	1037806	D	Mitofusin-1 {ECO:0000313|EMBL:JAB29017.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024324}  [Source:UniProtKB/TrEMBL;Acc:F7HDU6]
ENSCJAG00000002600	KNOWN	protein_coding	DOK5	chromosome:C_jacchus3.2.1:5:1:159171411:1	48377955	48554036	D	Docking protein 5 {ECO:0000313|EMBL:JAB21812.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004732}  [Source:UniProtKB/TrEMBL;Acc:F7BN10]
ENSCJAG00000013246	KNOWN	protein_coding	ZNF639	chromosome:C_jacchus3.2.1:15:1:98464013:1	970799	978911	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024345}; Zinc finger protein 639 {ECO:0000313|EMBL:JAB10503.1}  [Source:UniProtKB/TrEMBL;Acc:F7H8G3]
ENSCJAG00000034200	NOVEL	protein_coding	ENSCJAG00000034200	chromosome:C_jacchus3.2.1:11:1:130397257:1	66320030	66322310	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050983}  [Source:UniProtKB/TrEMBL;Acc:F6SZM2]
ENSCJAG00000002615	KNOWN	protein_coding	PFDN4	chromosome:C_jacchus3.2.1:5:1:159171411:1	48105342	48117734	D	Prefoldin subunit 4 {ECO:0000256|PIRNR:PIRNR016477}  [Source:UniProtKB/TrEMBL;Acc:F7BMN8]
ENSCJAG00000015144	KNOWN_BY_PROJECTION	protein_coding	MTTP	chromosome:C_jacchus3.2.1:3:1:190850796:1	94067321	94124351	R	microsomal triglyceride transfer protein [Source:HGNC Symbol;Acc:HGNC:7467]
ENSCJAG00000008168	KNOWN_BY_PROJECTION	protein_coding	CAPN2	chromosome:C_jacchus3.2.1:19:1:49578535:1	1111275	1174610	R	calpain 2, (m/II) large subunit [Source:HGNC Symbol;Acc:HGNC:1479]
ENSCJAG00000002214	KNOWN	protein_coding	MORF4L1	chromosome:C_jacchus3.2.1:10:1:132174527:1	18529960	18562210	D	Mortality factor 4-like protein 1 isoform 2 {ECO:0000313|EMBL:JAB07373.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004130}  [Source:UniProtKB/TrEMBL;Acc:F7CM44]
ENSCJAG00000013262	KNOWN_BY_PROJECTION	protein_coding	KCNMB3	chromosome:C_jacchus3.2.1:15:1:98464013:1	901445	908443	R	potassium channel subfamily M regulatory beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:6287]
ENSCJAG00000011388	KNOWN	protein_coding	CD274	chromosome:C_jacchus3.2.1:1:1:210400635:1	107187585	107206197	D	Callithrix jacchus CD274 molecule (CD274), mRNA. [Source:RefSeq mRNA;Acc:NM_001267747]
ENSCJAG00000036482	NOVEL	protein_coding	ENSCJAG00000036482	chromosome:C_jacchus3.2.1:19:1:49578535:1	1087325	1107775	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015066}  [Source:UniProtKB/TrEMBL;Acc:F7FFU3]
ENSCJAG00000015189	KNOWN	protein_coding	DAPP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	93847355	93903032	R	Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide {ECO:0000313|EMBL:JAB06681.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028002}  [Source:UniProtKB/TrEMBL;Acc:F6Y658]
ENSCJAG00000013294	KNOWN	protein_coding	PIK3CA	chromosome:C_jacchus3.2.1:15:1:98464013:1	858615	894263	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024572}  [Source:UniProtKB/TrEMBL;Acc:F7G0N7]
ENSCJAG00000011374	KNOWN	protein_coding	PLGRKT	chromosome:C_jacchus3.2.1:1:1:210400635:1	107075419	107175308	R	Plasminogen receptor (KT) {ECO:0000313|EMBL:JAB02121.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020926}  [Source:UniProtKB/TrEMBL;Acc:F7H646]
ENSCJAG00000011373	NOVEL	pseudogene	ENSCJAG00000011373	chromosome:C_jacchus3.2.1:1:1:210400635:1	107058896	107059157	D	<no descrition>
ENSCJAG00000013389	NOVEL	protein_coding	ENSCJAG00000013389	chromosome:C_jacchus3.2.1:15:1:98464013:1	801691	803545	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024577}  [Source:UniProtKB/TrEMBL;Acc:F7G0L4]
ENSCJAG00000011365	NOVEL	protein_coding	ENSCJAG00000011365	chromosome:C_jacchus3.2.1:1:1:210400635:1	107045462	107050272	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020906}  [Source:UniProtKB/TrEMBL;Acc:F7HBB5]
ENSCJAG00000011363	NOVEL	pseudogene	ENSCJAG00000011363	chromosome:C_jacchus3.2.1:1:1:210400635:1	107011126	107011366	D	<no descrition>
ENSCJAG00000013394	NOVEL	protein_coding	ENSCJAG00000013394	chromosome:C_jacchus3.2.1:15:1:98464013:1	730475	731332	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024590}  [Source:UniProtKB/TrEMBL;Acc:F7F9H7]
ENSCJAG00000013409	NOVEL	pseudogene	ENSCJAG00000013409	chromosome:C_jacchus3.2.1:15:1:98464013:1	717835	718153	R	<no descrition>
ENSCJAG00000000625	KNOWN_BY_PROJECTION	protein_coding	CYP24A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	48048160	48069826	R	cytochrome P450, family 24, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2602]
ENSCJAG00000013399	KNOWN	protein_coding	ZMAT3	chromosome:C_jacchus3.2.1:15:1:98464013:1	690188	728816	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024613}; Zinc finger matrin-type protein 3 isoform 2 {ECO:0000313|EMBL:JAB03099.1}  [Source:UniProtKB/TrEMBL;Acc:F6QA70]
ENSCJAG00000006921	KNOWN_BY_PROJECTION	protein_coding	ARHGEF25	chromosome:C_jacchus3.2.1:9:1:124281992:1	46442366	46458583	D	Rho guanine nucleotide exchange factor (GEF) 25 [Source:HGNC Symbol;Acc:HGNC:30275]
ENSCJAG00000013410	KNOWN	protein_coding	ENSCJAG00000013410	chromosome:C_jacchus3.2.1:15:1:98464013:1	201939	482660	D	Calcium-activated potassium channel subunit beta-2 {ECO:0000313|EMBL:JAB26892.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024629}  [Source:UniProtKB/TrEMBL;Acc:F6PZE6]
ENSCJAG00000021202	KNOWN	protein_coding	NPAS2	chromosome:C_jacchus3.2.1:14:1:108792865:1	5155420	5331282	D	Neuronal PAS domain-containing protein 2 {ECO:0000313|EMBL:JAB17607.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039498}  [Source:UniProtKB/TrEMBL;Acc:F7FDP6]
ENSCJAG00000015101	KNOWN_BY_PROJECTION	protein_coding	PDE2A	chromosome:C_jacchus3.2.1:11:1:130397257:1	66162901	66247258	D	phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
ENSCJAG00000021875	NOVEL	protein_coding	ENSCJAG00000021875	chromosome:C_jacchus3.2.1:15:1:98464013:1	121892	122405	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050476}  [Source:UniProtKB/TrEMBL;Acc:F7H3L7]
ENSCJAG00000008144	NOVEL	protein_coding	ENSCJAG00000008144	chromosome:C_jacchus3.2.1:19:1:49578535:1	1040439	1108518	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015070}  [Source:UniProtKB/TrEMBL;Acc:F7F2U5]
ENSCJAG00000016297	KNOWN_BY_PROJECTION	protein_coding	TAB1	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	95686	124510	D	TGF-beta activated kinase 1/MAP3K7 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:18157]
ENSCJAG00000021198	NOVEL	protein_coding	ENSCJAG00000021198	chromosome:C_jacchus3.2.1:14:1:108792865:1	4892587	4902579	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039477}  [Source:UniProtKB/TrEMBL;Acc:F7FE28]
ENSCJAG00000011358	KNOWN_BY_PROJECTION	protein_coding	INSL6	chromosome:C_jacchus3.2.1:1:1:210400635:1	106904656	106947241	R	insulin-like 6 [Source:HGNC Symbol;Acc:HGNC:6089]
ENSCJAG00000008131	KNOWN_BY_PROJECTION	protein_coding	FBXO28	chromosome:C_jacchus3.2.1:19:1:49578535:1	888271	932919	R	F-box protein 28 [Source:HGNC Symbol;Acc:HGNC:29046]
ENSCJAG00000010160	KNOWN	protein_coding	PDCL3	chromosome:C_jacchus3.2.1:14:1:108792865:1	4854916	4865852	D	Phosducin-like protein 3 {ECO:0000313|EMBL:JAB10084.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018691}  [Source:UniProtKB/TrEMBL;Acc:F7G7I6]
ENSCJAG00000010158	KNOWN_BY_PROJECTION	protein_coding	NMS	chromosome:C_jacchus3.2.1:14:1:108792865:1	4752653	4764618	D	neuromedin S [Source:HGNC Symbol;Acc:HGNC:32203]
ENSCJAG00000015196	KNOWN	protein_coding	LAMTOR3	chromosome:C_jacchus3.2.1:3:1:190850796:1	93827151	93842529	D	Ragulator complex protein LAMTOR3 isoform 1 {ECO:0000313|EMBL:JAB05612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028038}  [Source:UniProtKB/TrEMBL;Acc:F6WBU0]
ENSCJAG00000006966	KNOWN	protein_coding	DTX3	chromosome:C_jacchus3.2.1:9:1:124281992:1	46435859	46441381	D	Putative E3 ubiquitin-protein ligase DTX3 {ECO:0000313|EMBL:JAB05632.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012939}  [Source:UniProtKB/TrEMBL;Acc:F6RQP2]
ENSCJAG00000000622	KNOWN	protein_coding	BCAS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	47838201	47965470	R	Breast carcinoma-amplified sequence 1 {ECO:0000313|EMBL:JAB08878.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049422}  [Source:UniProtKB/TrEMBL;Acc:F7CDK6]
ENSCJAG00000019566	NOVEL	protein_coding	ENSCJAG00000019566	scaffold:C_jacchus3.2.1:ACFV01195976.1:1:3668:1	1640	3667	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036350}  [Source:UniProtKB/TrEMBL;Acc:H9KXJ1]
ENSCJAG00000022184	KNOWN_BY_PROJECTION	protein_coding	IGLV8-61	scaffold:C_jacchus3.2.1:GL286331.1:1:19597:1	11069	12270	D	immunoglobulin lambda variable 8-61 [Source:HGNC Symbol;Acc:HGNC:5931]
ENSCJAG00000002181	KNOWN_BY_PROJECTION	protein_coding	ADAMTS7	chromosome:C_jacchus3.2.1:10:1:132174527:1	18416889	18465112	R	ADAM metallopeptidase with thrombospondin type 1 motif, 7 [Source:HGNC Symbol;Acc:HGNC:223]
ENSCJAG00000010101	NOVEL	protein_coding	ENSCJAG00000010101	chromosome:C_jacchus3.2.1:13:1:117903854:1	117876686	117878915	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018572}  [Source:UniProtKB/TrEMBL;Acc:F7DH18]
ENSCJAG00000015210	KNOWN_BY_PROJECTION	protein_coding	DNAJB14	chromosome:C_jacchus3.2.1:3:1:190850796:1	93774709	93822399	D	DnaJ (Hsp40) homolog, subfamily B, member 14 [Source:HGNC Symbol;Acc:HGNC:25881]
ENSCJAG00000033694	NOVEL	protein_coding	ENSCJAG00000033694	chromosome:C_jacchus3.2.1:5:1:159171411:1	47716860	47717856	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028330}  [Source:UniProtKB/TrEMBL;Acc:F7B6X7]
ENSCJAG00000033678	NOVEL	protein_coding	ENSCJAG00000033678	chromosome:C_jacchus3.2.1:13:1:117903854:1	117847041	117847279	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043121}  [Source:UniProtKB/TrEMBL;Acc:F7IPJ2]
ENSCJAG00000023142	KNOWN_BY_PROJECTION	protein_coding	PARD6G	chromosome:C_jacchus3.2.1:13:1:117903854:1	117697989	117798496	R	par-6 family cell polarity regulator gamma [Source:HGNC Symbol;Acc:HGNC:16076]
ENSCJAG00000008128	KNOWN	protein_coding	DEGS1	chromosome:C_jacchus3.2.1:19:1:49578535:1	863968	875085	R	Sphingolipid delta(4)-desaturase DES1 {ECO:0000313|EMBL:JAB01595.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014996}  [Source:UniProtKB/TrEMBL;Acc:F7IN61]
ENSCJAG00000015038	KNOWN_BY_PROJECTION	protein_coding	ARAP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	66081752	66134481	D	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:HGNC:16925]
ENSCJAG00000010119	KNOWN_BY_PROJECTION	protein_coding	ADNP2	chromosome:C_jacchus3.2.1:13:1:117903854:1	117649322	117681330	D	ADNP homeobox 2 [Source:HGNC Symbol;Acc:HGNC:23803]
ENSCJAG00000006988	KNOWN_BY_PROJECTION	protein_coding	PIP4K2C	chromosome:C_jacchus3.2.1:9:1:124281992:1	46418989	46430672	D	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma [Source:HGNC Symbol;Acc:HGNC:23786]
ENSCJAG00000000615	KNOWN_BY_PROJECTION	protein_coding	ZNF217	chromosome:C_jacchus3.2.1:5:1:159171411:1	47478669	47493421	R	zinc finger protein 217 [Source:HGNC Symbol;Acc:HGNC:13009]
ENSCJAG00000010125	NOVEL	protein_coding	ENSCJAG00000010125	chromosome:C_jacchus3.2.1:13:1:117903854:1	117581346	117596166	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018619}  [Source:UniProtKB/TrEMBL;Acc:F7H5Z7]
ENSCJAG00000007031	NOVEL	pseudogene	ENSCJAG00000007031	chromosome:C_jacchus3.2.1:9:1:124281992:1	46412719	46413046	D	<no descrition>
ENSCJAG00000010130	KNOWN	protein_coding	TXNL4A	chromosome:C_jacchus3.2.1:13:1:117903854:1	117513518	117529869	R	Thioredoxin-like protein 4A {ECO:0000313|EMBL:JAB05723.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018629}  [Source:UniProtKB/TrEMBL;Acc:F7H0V3]
ENSCJAG00000015235	KNOWN	protein_coding	ENSCJAG00000015235	chromosome:C_jacchus3.2.1:3:1:190850796:1	93770711	93773345	D	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7I4U5]
ENSCJAG00000010135	KNOWN	protein_coding	HSBP1L1	chromosome:C_jacchus3.2.1:13:1:117903854:1	117505184	117510817	D	Heat shock factor-binding protein 1-like protein 1 {ECO:0000313|EMBL:JAB23836.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018635}  [Source:UniProtKB/TrEMBL;Acc:F7H0N8]
ENSCJAG00000032704	NOVEL	protein_coding	ENSCJAG00000032704	chromosome:C_jacchus3.2.1:3:1:190850796:1	93688131	93697687	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043416}  [Source:UniProtKB/TrEMBL;Acc:F7IEZ4]
ENSCJAG00000010139	KNOWN	protein_coding	PQLC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	117453825	117487089	R	PQ-loop repeat-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB07190.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018647}  [Source:UniProtKB/TrEMBL;Acc:F7GVK8]
ENSCJAG00000015242	KNOWN	protein_coding	DDIT4L	chromosome:C_jacchus3.2.1:3:1:190850796:1	93513588	93518534	D	DNA damage-inducible transcript 4-like protein {ECO:0000313|EMBL:JAB01764.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028092}  [Source:UniProtKB/TrEMBL;Acc:F6UJJ8]
ENSCJAG00000000596	KNOWN	protein_coding	ZFP64	chromosome:C_jacchus3.2.1:5:1:159171411:1	46019059	46116315	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043724}; Zinc finger protein 64 isoform a {ECO:0000313|EMBL:JAB08254.1}  [Source:UniProtKB/TrEMBL;Acc:F7HVW4]
ENSCJAG00000010153	KNOWN_BY_PROJECTION	protein_coding	CTDP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	117241686	117313500	D	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:2498]
ENSCJAG00000010146	KNOWN	protein_coding	CHST10	chromosome:C_jacchus3.2.1:14:1:108792865:1	4668049	4692691	R	Carbohydrate sulfotransferase 10 {ECO:0000313|EMBL:JAB08144.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051845}  [Source:UniProtKB/TrEMBL;Acc:F6WIW0]
ENSCJAG00000023446	KNOWN_BY_PROJECTION	protein_coding	NFATC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	116937879	117036543	D	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 [Source:HGNC Symbol;Acc:HGNC:7775]
ENSCJAG00000000591	NOVEL	protein_coding	ENSCJAG00000000591	chromosome:C_jacchus3.2.1:5:1:159171411:1	45741617	45757945	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001028}  [Source:UniProtKB/TrEMBL;Acc:F7BL13]
ENSCJAG00000010105	KNOWN_BY_PROJECTION	protein_coding	LONRF2	chromosome:C_jacchus3.2.1:14:1:108792865:1	4438224	4477585	R	LON peptidase N-terminal domain and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:24788]
ENSCJAG00000000586	KNOWN_BY_PROJECTION	protein_coding	ATP9A	chromosome:C_jacchus3.2.1:5:1:159171411:1	45552483	45686073	R	ATPase, class II, type 9A [Source:HGNC Symbol;Acc:HGNC:13540]
ENSCJAG00000000574	NOVEL	protein_coding	ENSCJAG00000000574	chromosome:C_jacchus3.2.1:5:1:159171411:1	45469639	45476060	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001001}  [Source:UniProtKB/TrEMBL;Acc:F7C1Y7]
ENSCJAG00000033145	NOVEL	protein_coding	ENSCJAG00000033145	chromosome:C_jacchus3.2.1:5:1:159171411:1	45375289	45404488	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000998}  [Source:UniProtKB/TrEMBL;Acc:F6R3Z9]
ENSCJAG00000003624	KNOWN	protein_coding	ANXA11	chromosome:C_jacchus3.2.1:12:1:121768101:1	44180705	44277601	D	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F7EC70]
ENSCJAG00000000570	KNOWN	protein_coding	KCNG1	chromosome:C_jacchus3.2.1:5:1:159171411:1	44881535	44947245	R	Potassium voltage-gated channel subfamily G member 1 {ECO:0000313|EMBL:JAB04672.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000985}  [Source:UniProtKB/TrEMBL;Acc:F6RE04]
ENSCJAG00000010071	KNOWN_BY_PROJECTION	protein_coding	AFF3	chromosome:C_jacchus3.2.1:14:1:108792865:1	3703303	4164644	R	AF4/FMR2 family, member 3 [Source:HGNC Symbol;Acc:HGNC:6473]
ENSCJAG00000007347	KNOWN_BY_PROJECTION	protein_coding	ATP9B	chromosome:C_jacchus3.2.1:13:1:117903854:1	116630776	116913669	D	ATPase, class II, type 9B [Source:HGNC Symbol;Acc:HGNC:13541]
ENSCJAG00000008031	KNOWN_BY_PROJECTION	protein_coding	NVL	chromosome:C_jacchus3.2.1:19:1:49578535:1	684603	830419	D	nuclear VCP-like [Source:HGNC Symbol;Acc:HGNC:8070]
ENSCJAG00000001904	KNOWN_BY_PROJECTION	protein_coding	AGER	chromosome:C_jacchus3.2.1:4:1:171630274:1	32738847	32761530	R	advanced glycosylation end product-specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
ENSCJAG00000011228	KNOWN_BY_PROJECTION	protein_coding	JAK2	chromosome:C_jacchus3.2.1:1:1:210400635:1	106759255	106885183	D	Janus kinase 2 [Source:HGNC Symbol;Acc:HGNC:6192]
ENSCJAG00000007332	KNOWN_BY_PROJECTION	protein_coding	SALL3	chromosome:C_jacchus3.2.1:13:1:117903854:1	116560786	116567721	D	spalt-like transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:10527]
ENSCJAG00000015247	KNOWN_BY_PROJECTION	protein_coding	EMCN	chromosome:C_jacchus3.2.1:3:1:190850796:1	93172697	93299130	D	endomucin [Source:HGNC Symbol;Acc:HGNC:16041]
ENSCJAG00000034550	NOVEL	protein_coding	ENSCJAG00000034550	chromosome:C_jacchus3.2.1:13:1:117903854:1	115574783	115754031	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018806}  [Source:UniProtKB/TrEMBL;Acc:F7DGC4]
ENSCJAG00000013629	NOVEL	protein_coding	ENSCJAG00000013629	chromosome:C_jacchus3.2.1:13:1:117903854:1	115528333	115851688	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042549}  [Source:UniProtKB/TrEMBL;Acc:F6VQ99]
ENSCJAG00000033277	NOVEL	pseudogene	ENSCJAG00000033277	chromosome:C_jacchus3.2.1:13:1:117903854:1	115207591	115208440	D	<no descrition>
ENSCJAG00000031194	NOVEL	pseudogene	ENSCJAG00000031194	chromosome:C_jacchus3.2.1:13:1:117903854:1	115023779	115024550	R	<no descrition>
ENSCJAG00000003641	KNOWN_BY_PROJECTION	protein_coding	DYDC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	44056324	44078738	D	DPY30 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23460]
ENSCJAG00000007988	KNOWN_BY_PROJECTION	protein_coding	GALR1	chromosome:C_jacchus3.2.1:13:1:117903854:1	114899520	114920053	D	galanin receptor 1 [Source:HGNC Symbol;Acc:HGNC:4132]
ENSCJAG00000003650	KNOWN_BY_PROJECTION	protein_coding	DYDC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	44037648	44056900	R	DPY30 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23468]
ENSCJAG00000008013	KNOWN	protein_coding	CNIH4	chromosome:C_jacchus3.2.1:19:1:49578535:1	630652	659773	R	Protein cornichon homolog 4 {ECO:0000313|EMBL:JAB04790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014817}  [Source:UniProtKB/TrEMBL;Acc:F7IBF5]
ENSCJAG00000008010	KNOWN_BY_PROJECTION	protein_coding	MBP	chromosome:C_jacchus3.2.1:13:1:117903854:1	114619226	114654475	R	myelin basic protein [Source:HGNC Symbol;Acc:HGNC:6925]
ENSCJAG00000002177	NOVEL	protein_coding	ENSCJAG00000002177	chromosome:C_jacchus3.2.1:10:1:132174527:1	18395985	18396662	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003901}  [Source:UniProtKB/TrEMBL;Acc:F7EKB5]
ENSCJAG00000007033	KNOWN_BY_PROJECTION	protein_coding	KIF5A	chromosome:C_jacchus3.2.1:9:1:124281992:1	46375687	46410069	D	kinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]
ENSCJAG00000032259	NOVEL	protein_coding	ENSCJAG00000032259	chromosome:C_jacchus3.2.1:10:1:132174527:1	18329379	18330952	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046586}  [Source:UniProtKB/TrEMBL;Acc:F7I1E7]
ENSCJAG00000002173	NOVEL	pseudogene	ENSCJAG00000002173	chromosome:C_jacchus3.2.1:10:1:132174527:1	18328228	18329098	R	<no descrition>
ENSCJAG00000011202	NOVEL	protein_coding	ENSCJAG00000011202	chromosome:C_jacchus3.2.1:1:1:210400635:1	106563758	106628895	D	<no descrition>
ENSCJAG00000002170	NOVEL	pseudogene	ENSCJAG00000002170	chromosome:C_jacchus3.2.1:10:1:132174527:1	18323763	18324709	R	<no descrition>
ENSCJAG00000002168	NOVEL	protein_coding	ENSCJAG00000002168	chromosome:C_jacchus3.2.1:10:1:132174527:1	18310880	18312304	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003889}  [Source:UniProtKB/TrEMBL;Acc:F7GG46]
ENSCJAG00000002165	NOVEL	pseudogene	ENSCJAG00000002165	chromosome:C_jacchus3.2.1:10:1:132174527:1	18287968	18288377	R	<no descrition>
ENSCJAG00000033316	NOVEL	pseudogene	ENSCJAG00000033316	chromosome:C_jacchus3.2.1:10:1:132174527:1	18120969	18121531	D	<no descrition>
ENSCJAG00000012330	KNOWN_BY_PROJECTION	protein_coding	NRG4	chromosome:C_jacchus3.2.1:10:1:132174527:1	18093320	18100391	R	neuregulin 4 [Source:HGNC Symbol;Acc:HGNC:29862]
ENSCJAG00000010048	KNOWN_BY_PROJECTION	protein_coding	REV1	chromosome:C_jacchus3.2.1:14:1:108792865:1	3560802	3622132	R	REV1, polymerase (DNA directed) [Source:HGNC Symbol;Acc:HGNC:14060]
ENSCJAG00000000551	KNOWN_BY_PROJECTION	protein_coding	DPM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	44857944	44881113	R	dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3005]
ENSCJAG00000011188	KNOWN	protein_coding	AK3	chromosome:C_jacchus3.2.1:1:1:210400635:1	106448507	106470604	R	GTP:AMP phosphotransferase AK3, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03169}  [Source:UniProtKB/TrEMBL;Acc:F6WDZ4]
ENSCJAG00000003632	KNOWN	protein_coding	MAT1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	43980917	44129428	D	S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}  [Source:UniProtKB/TrEMBL;Acc:F7DH88]
ENSCJAG00000003657	KNOWN	protein_coding	FAM213A	chromosome:C_jacchus3.2.1:12:1:121768101:1	43967297	43990083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006635}  [Source:UniProtKB/TrEMBL;Acc:F7H636]
ENSCJAG00000011155	KNOWN	protein_coding	CDC37L1	chromosome:C_jacchus3.2.1:1:1:210400635:1	106415838	106443009	D	Hsp90 co-chaperone Cdc37-like 1 {ECO:0000313|EMBL:JAB09579.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020599}  [Source:UniProtKB/TrEMBL;Acc:F7FWY6]
ENSCJAG00000000563	KNOWN	protein_coding	ADNP	chromosome:C_jacchus3.2.1:5:1:159171411:1	44814475	44854035	R	Activity-dependent neuroprotector homeobox protein {ECO:0000313|EMBL:JAB10411.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000979}  [Source:UniProtKB/TrEMBL;Acc:F6RER5]
ENSCJAG00000003379	KNOWN_BY_PROJECTION	protein_coding	TSPAN14	chromosome:C_jacchus3.2.1:12:1:121768101:1	43878414	43912485	R	tetraspanin 14 [Source:HGNC Symbol;Acc:HGNC:23303]
ENSCJAG00000000562	KNOWN_BY_PROJECTION	protein_coding	BCAS4	chromosome:C_jacchus3.2.1:5:1:159171411:1	44710913	44802016	D	breast carcinoma amplified sequence 4 [Source:HGNC Symbol;Acc:HGNC:14367]
ENSCJAG00000012331	KNOWN	protein_coding	FBXO22	chromosome:C_jacchus3.2.1:10:1:132174527:1	18045594	18075860	D	F-box only protein 22 isoform a {ECO:0000313|EMBL:JAB09125.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022609}  [Source:UniProtKB/TrEMBL;Acc:F7HZ05]
ENSCJAG00000003404	KNOWN_BY_PROJECTION	protein_coding	SH2D4B	chromosome:C_jacchus3.2.1:12:1:121768101:1	43764229	43864911	R	SH2 domain containing 4B [Source:HGNC Symbol;Acc:HGNC:31440]
ENSCJAG00000000559	KNOWN	protein_coding	PARD6B	chromosome:C_jacchus3.2.1:5:1:159171411:1	44654665	44680271	D	Partitioning defective 6 homolog beta {ECO:0000313|EMBL:JAB04483.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000969}  [Source:UniProtKB/TrEMBL;Acc:F6RQ62]
ENSCJAG00000003417	NOVEL	protein_coding	ENSCJAG00000003417	chromosome:C_jacchus3.2.1:12:1:121768101:1	43217335	43218118	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006208}  [Source:UniProtKB/TrEMBL;Acc:F7H6M4]
ENSCJAG00000008039	KNOWN_BY_PROJECTION	protein_coding	ZNF236	chromosome:C_jacchus3.2.1:13:1:117903854:1	114445968	114608175	D	zinc finger protein 236 [Source:HGNC Symbol;Acc:HGNC:13028]
ENSCJAG00000012359	NOVEL	protein_coding	ENSCJAG00000012359	chromosome:C_jacchus3.2.1:10:1:132174527:1	18025124	18042462	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022624}  [Source:UniProtKB/TrEMBL;Acc:F7HWP2]
ENSCJAG00000004827	KNOWN_BY_PROJECTION	protein_coding	SAPCD2	chromosome:C_jacchus3.2.1:10:1:132174527:1	18002526	18003640	R	suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
ENSCJAG00000004835	KNOWN_BY_PROJECTION	protein_coding	ODF3L1	chromosome:C_jacchus3.2.1:10:1:132174527:1	17981305	17984638	D	outer dense fiber of sperm tails 3-like 1 [Source:HGNC Symbol;Acc:HGNC:28735]
ENSCJAG00000015260	KNOWN	protein_coding	PPP3CA	chromosome:C_jacchus3.2.1:3:1:190850796:1	92356194	92673364	D	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F6ZPA8]
ENSCJAG00000007937	KNOWN_BY_PROJECTION	protein_coding	WDR26	chromosome:C_jacchus3.2.1:19:1:49578535:1	573184	621331	D	WD repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:21208]
ENSCJAG00000008121	KNOWN_BY_PROJECTION	protein_coding	C18orf65	chromosome:C_jacchus3.2.1:13:1:117903854:1	114105996	114106851	D	chromosome 18 open reading frame 65 [Source:HGNC Symbol;Acc:HGNC:51248]
ENSCJAG00000009960	KNOWN_BY_PROJECTION	protein_coding	EIF5B	chromosome:C_jacchus3.2.1:14:1:108792865:1	3499267	3559000	D	eukaryotic translation initiation factor 5B [Source:HGNC Symbol;Acc:HGNC:30793]
ENSCJAG00000022733	KNOWN_BY_PROJECTION	protein_coding	ZNF516	chromosome:C_jacchus3.2.1:13:1:117903854:1	113963569	114052148	R	zinc finger protein 516 [Source:HGNC Symbol;Acc:HGNC:28990]
ENSCJAG00000003229	KNOWN_BY_PROJECTION	protein_coding	SMIM21	chromosome:C_jacchus3.2.1:13:1:117903854:1	113009544	113017889	R	small integral membrane protein 21 [Source:HGNC Symbol;Acc:HGNC:27598]
ENSCJAG00000003224	KNOWN_BY_PROJECTION	protein_coding	TSHZ1	chromosome:C_jacchus3.2.1:13:1:117903854:1	112874492	112877683	D	teashirt zinc finger homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10669]
ENSCJAG00000007929	KNOWN	protein_coding	CNIH3	chromosome:C_jacchus3.2.1:19:1:49578535:1	232441	353303	R	Protein cornichon homolog 3 {ECO:0000313|EMBL:JAB18212.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014664}  [Source:UniProtKB/TrEMBL;Acc:F7HXG9]
ENSCJAG00000003219	KNOWN_BY_PROJECTION	protein_coding	ZADH2	chromosome:C_jacchus3.2.1:13:1:117903854:1	112782329	112794446	R	zinc binding alcohol dehydrogenase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28697]
ENSCJAG00000035278	NOVEL	protein_coding	ENSCJAG00000035278	scaffold:C_jacchus3.2.1:GL285094.1:1:55576:1	35430	39553	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049373}  [Source:UniProtKB/TrEMBL;Acc:H9KYE1]
ENSCJAG00000014994	KNOWN_BY_PROJECTION	protein_coding	ATG16L2	chromosome:C_jacchus3.2.1:11:1:130397257:1	65986212	66001145	R	autophagy related 16-like 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25464]
ENSCJAG00000034298	NOVEL	protein_coding	ENSCJAG00000034298	chromosome:C_jacchus3.2.1:10:1:132174527:1	17946504	17948384	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050276}  [Source:UniProtKB/TrEMBL;Acc:F7EZ24]
ENSCJAG00000015309	NOVEL	pseudogene	ENSCJAG00000015309	chromosome:C_jacchus3.2.1:3:1:190850796:1	92339903	92341110	D	<no descrition>
ENSCJAG00000031393	NOVEL	protein_coding	ENSCJAG00000031393	chromosome:C_jacchus3.2.1:10:1:132174527:1	17927785	17928745	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042536}  [Source:UniProtKB/TrEMBL;Acc:F6WA32]
ENSCJAG00000005230	NOVEL	protein_coding	ENSCJAG00000005230	scaffold:C_jacchus3.2.1:GL285005.1:1:149847:1	28362	29775	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009541}  [Source:UniProtKB/TrEMBL;Acc:H9KW57]
ENSCJAG00000033787	NOVEL	protein_coding	ENSCJAG00000033787	scaffold:C_jacchus3.2.1:GL286817.1:1:9888:1	3654	4939	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052159}  [Source:UniProtKB/TrEMBL;Acc:H9KYM0]
ENSCJAG00000004860	KNOWN	protein_coding	SNX33	chromosome:C_jacchus3.2.1:10:1:132174527:1	17898663	17907596	D	Sorting nexin {ECO:0000256|PIRNR:PIRNR027744}  [Source:UniProtKB/TrEMBL;Acc:F7I802]
ENSCJAG00000003633	KNOWN_BY_PROJECTION	protein_coding	NRG3	chromosome:C_jacchus3.2.1:12:1:121768101:1	41353832	41607637	R	neuregulin 3 [Source:HGNC Symbol;Acc:HGNC:7999]
ENSCJAG00000011408	NOVEL	protein_coding	ENSCJAG00000011408	scaffold:C_jacchus3.2.1:GL285899.1:1:15475:1	7338	12171	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047274}  [Source:UniProtKB/TrEMBL;Acc:H9KY88]
ENSCJAG00000003204	KNOWN	protein_coding	ZNF407	chromosome:C_jacchus3.2.1:13:1:117903854:1	112201786	112652620	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005857}; Zinc finger protein 407 isoform 1 {ECO:0000313|EMBL:JAB24602.1}  [Source:UniProtKB/TrEMBL;Acc:F7HRA6]
ENSCJAG00000033679	NOVEL	protein_coding	ENSCJAG00000033679	chromosome:C_jacchus3.2.1:12:1:121768101:1	40222861	40224238	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004518}  [Source:UniProtKB/TrEMBL;Acc:F7CK91]
ENSCJAG00000034013	NOVEL	pseudogene	ENSCJAG00000034013	scaffold:C_jacchus3.2.1:ACFV01195327.1:1:3583:1	254	600	D	<no descrition>
ENSCJAG00000009936	KNOWN	protein_coding	TXNDC9	chromosome:C_jacchus3.2.1:14:1:108792865:1	3481980	3498338	R	Thioredoxin domain-containing protein 9 {ECO:0000313|EMBL:JAB07235.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018288}  [Source:UniProtKB/TrEMBL;Acc:F7FWQ3]
ENSCJAG00000031730	NOVEL	protein_coding	ENSCJAG00000031730	scaffold:C_jacchus3.2.1:GL285346.1:1:4773:1	47	1026	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010004}  [Source:UniProtKB/TrEMBL;Acc:H9KW78]
ENSCJAG00000018853	NOVEL	protein_coding	ENSCJAG00000018853	chromosome:C_jacchus3.2.1:14:1:108792865:1	3474224	3475163	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035006}  [Source:UniProtKB/TrEMBL;Acc:F7IIE3]
ENSCJAG00000015397	NOVEL	protein_coding	ENSCJAG00000015397	chromosome:C_jacchus3.2.1:12:1:121768101:1	40104354	40135043	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028388}  [Source:UniProtKB/TrEMBL;Acc:F6Z5Y1]
ENSCJAG00000007070	KNOWN_BY_PROJECTION	protein_coding	LYG1	chromosome:C_jacchus3.2.1:14:1:108792865:1	3413148	3431081	R	lysozyme G-like 1 [Source:HGNC Symbol;Acc:HGNC:27014]
ENSCJAG00000011136	KNOWN_BY_PROJECTION	protein_coding	SPATA6L	chromosome:C_jacchus3.2.1:1:1:210400635:1	106328300	106403144	R	spermatogenesis associated 6-like [Source:HGNC Symbol;Acc:HGNC:25472]
ENSCJAG00000015393	KNOWN_BY_PROJECTION	protein_coding	C10orf99	chromosome:C_jacchus3.2.1:12:1:121768101:1	40073356	40083635	R	chromosome 10 open reading frame 99 [Source:HGNC Symbol;Acc:HGNC:31428]
ENSCJAG00000000534	KNOWN_BY_PROJECTION	protein_coding	FAM65C	chromosome:C_jacchus3.2.1:5:1:159171411:1	44504832	44613256	R	family with sequence similarity 65, member C [Source:HGNC Symbol;Acc:HGNC:16168]
ENSCJAG00000007074	KNOWN_BY_PROJECTION	protein_coding	LYG2	chromosome:C_jacchus3.2.1:14:1:108792865:1	3373958	3385586	R	lysozyme G-like 2 [Source:HGNC Symbol;Acc:HGNC:29615]
ENSCJAG00000015362	KNOWN_BY_PROJECTION	protein_coding	CDHR1	chromosome:C_jacchus3.2.1:12:1:121768101:1	40031453	40059042	R	cadherin-related family member 1 [Source:HGNC Symbol;Acc:HGNC:14550]
ENSCJAG00000003184	KNOWN_BY_PROJECTION	protein_coding	CNDP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	112101209	112150948	D	carnosine dipeptidase 1 (metallopeptidase M20 family) [Source:HGNC Symbol;Acc:HGNC:20675]
ENSCJAG00000007090	KNOWN	protein_coding	MITD1	chromosome:C_jacchus3.2.1:14:1:108792865:1	3291983	3308287	R	MIT domain-containing protein 1 {ECO:0000313|EMBL:JAB03562.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013161}  [Source:UniProtKB/TrEMBL;Acc:F6UBI2]
ENSCJAG00000015027	KNOWN	protein_coding	STARD10	chromosome:C_jacchus3.2.1:11:1:130397257:1	65899745	66059322	D	PCTP-like protein {ECO:0000313|EMBL:JAB05307.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044725}  [Source:UniProtKB/TrEMBL;Acc:F7GQL4]
ENSCJAG00000007099	KNOWN	protein_coding	LIPT1	chromosome:C_jacchus3.2.1:14:1:108792865:1	3281593	3287719	D	Lipoyltransferase 1, mitochondrial {ECO:0000313|EMBL:JAB03717.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013166}  [Source:UniProtKB/TrEMBL;Acc:F6UBC6]
ENSCJAG00000015356	KNOWN_BY_PROJECTION	protein_coding	LRIT2	chromosome:C_jacchus3.2.1:12:1:121768101:1	40025259	40029780	D	leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 [Source:HGNC Symbol;Acc:HGNC:23443]
ENSCJAG00000007085	KNOWN	protein_coding	MRPL30	chromosome:C_jacchus3.2.1:14:1:108792865:1	3276760	3319361	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043068}  [Source:UniProtKB/TrEMBL;Acc:F7HWB7]
ENSCJAG00000015350	KNOWN_BY_PROJECTION	protein_coding	LRIT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	40009175	40019029	D	leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 [Source:HGNC Symbol;Acc:HGNC:23404]
ENSCJAG00000015338	KNOWN	protein_coding	RGR	chromosome:C_jacchus3.2.1:12:1:121768101:1	39991258	40005865	R	Callithrix jacchus retinal G protein coupled receptor (RGR), mRNA. [Source:RefSeq mRNA;Acc:NM_001270913]
ENSCJAG00000014990	KNOWN	protein_coding	FCHSD2	chromosome:C_jacchus3.2.1:11:1:130397257:1	65648267	65977996	D	FCH and double SH3 domains protein 2 {ECO:0000313|EMBL:JAB05968.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043060}  [Source:UniProtKB/TrEMBL;Acc:F7HWC5]
ENSCJAG00000031810	NOVEL	protein_coding	ENSCJAG00000031810	chromosome:C_jacchus3.2.1:12:1:121768101:1	39964920	39972675	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045440}  [Source:UniProtKB/TrEMBL;Acc:F6QQF8]
ENSCJAG00000013919	NOVEL	pseudogene	ENSCJAG00000013919	scaffold:C_jacchus3.2.1:ACFV01175859.1:1:27566:1	12496	12896	D	<no descrition>
ENSCJAG00000003183	KNOWN	protein_coding	CNDP2	chromosome:C_jacchus3.2.1:13:1:117903854:1	112059334	112084145	D	Cytosolic non-specific dipeptidase isoform 1 {ECO:0000313|EMBL:JAB20759.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005806}  [Source:UniProtKB/TrEMBL;Acc:F7HVP6]
ENSCJAG00000007976	NOVEL	pseudogene	ENSCJAG00000007976	scaffold:C_jacchus3.2.1:GL286236.1:1:76065:1	29797	31260	R	<no descrition>
ENSCJAG00000007968	NOVEL	pseudogene	ENSCJAG00000007968	scaffold:C_jacchus3.2.1:GL286236.1:1:76065:1	41535	42606	R	<no descrition>
ENSCJAG00000011848	NOVEL	protein_coding	ENSCJAG00000011848	scaffold:C_jacchus3.2.1:GL285303.1:1:19323:1	8705	9480	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021744}  [Source:UniProtKB/TrEMBL;Acc:H9KWV0]
ENSCJAG00000022092	KNOWN	protein_coding	P2RY2	chromosome:C_jacchus3.2.1:11:1:130397257:1	65547732	65565853	R	P2Y purinoceptor 2 {ECO:0000313|EMBL:JAB02259.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040756}  [Source:UniProtKB/TrEMBL;Acc:F7IT87]
ENSCJAG00000001969	KNOWN_BY_PROJECTION	protein_coding	PPT2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32728448	32745082	D	palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:HGNC:9326]
ENSCJAG00000015971	KNOWN_BY_PROJECTION	protein_coding	RPS24	chromosome:C_jacchus3.2.1:11:1:130397257:1	65536477	65537477	D	ribosomal protein S24 [Source:HGNC Symbol;Acc:HGNC:10411]
ENSCJAG00000007481	NOVEL	protein_coding	ENSCJAG00000007481	scaffold:C_jacchus3.2.1:GL288552.1:1:16924:1	11104	16888	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013898}  [Source:UniProtKB/TrEMBL;Acc:H9KWD8]
ENSCJAG00000009199	KNOWN	protein_coding	ENSCJAG00000009199	scaffold:C_jacchus3.2.1:ACFV01174829.1:1:53208:1	39492	49856	R	Aldehyde dehydrogenase family 7 member A1-like protein {ECO:0000313|EMBL:ABQ22644.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016843}  [Source:UniProtKB/TrEMBL;Acc:A6MKQ3]
ENSCJAG00000015539	KNOWN_BY_PROJECTION	protein_coding	TEX13B	scaffold:C_jacchus3.2.1:ACFV01182524.1:1:17541:1	3036	4061	R	testis expressed 13B [Source:HGNC Symbol;Acc:HGNC:11736]
ENSCJAG00000015314	KNOWN_BY_PROJECTION	protein_coding	BANK1	chromosome:C_jacchus3.2.1:3:1:190850796:1	91571003	91884812	R	B-cell scaffold protein with ankyrin repeats 1 [Source:HGNC Symbol;Acc:HGNC:18233]
ENSCJAG00000003178	KNOWN_BY_PROJECTION	protein_coding	FAM69C	chromosome:C_jacchus3.2.1:13:1:117903854:1	111998566	112021465	R	family with sequence similarity 69, member C [Source:HGNC Symbol;Acc:HGNC:31729]
ENSCJAG00000003172	KNOWN	protein_coding	C18ORF63	chromosome:C_jacchus3.2.1:13:1:117903854:1	111878703	111921328	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005786}; Uncharacterized protein C18orf63 {ECO:0000313|EMBL:JAB02307.1}  [Source:UniProtKB/TrEMBL;Acc:F7I7I9]
ENSCJAG00000011113	KNOWN	protein_coding	SLC1A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	106236409	106326940	D	Excitatory amino acid transporter 3 {ECO:0000313|EMBL:JAB07288.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048674}  [Source:UniProtKB/TrEMBL;Acc:F6SPU2]
ENSCJAG00000004883	KNOWN	protein_coding	IMP3	chromosome:C_jacchus3.2.1:10:1:132174527:1	17886277	17898286	R	U3 small nucleolar ribonucleoprotein IMP3 {ECO:0000313|EMBL:JAB10208.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008917}  [Source:UniProtKB/TrEMBL;Acc:F7I5Q9]
ENSCJAG00000003163	KNOWN	protein_coding	CYB5A	chromosome:C_jacchus3.2.1:13:1:117903854:1	111811991	111848253	R	Cytochrome b5 isoform 1 {ECO:0000313|EMBL:JAB11986.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005775}  [Source:UniProtKB/TrEMBL;Acc:F7I9U5]
ENSCJAG00000000531	KNOWN	protein_coding	PTPN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	44421528	44502711	D	Tyrosine-protein phosphatase non-receptor type {ECO:0000256|PIRNR:PIRNR000926}  [Source:UniProtKB/TrEMBL;Acc:F6SC90]
ENSCJAG00000031536	KNOWN_BY_PROJECTION	protein_coding	KIAA1211L	chromosome:C_jacchus3.2.1:14:1:108792865:1	2985995	3136662	R	KIAA1211-like [Source:HGNC Symbol;Acc:HGNC:33454]
ENSCJAG00000003159	KNOWN	protein_coding	TIMM21	chromosome:C_jacchus3.2.1:13:1:117903854:1	111704753	111714486	D	Mitochondrial import inner membrane translocase subunit Tim21 {ECO:0000313|EMBL:JAB05135.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005757}  [Source:UniProtKB/TrEMBL;Acc:F7IC46]
ENSCJAG00000011083	KNOWN_BY_PROJECTION	protein_coding	GLIS3	chromosome:C_jacchus3.2.1:1:1:210400635:1	105552306	106051318	R	GLIS family zinc finger 3 [Source:HGNC Symbol;Acc:HGNC:28510]
ENSCJAG00000003151	KNOWN	protein_coding	FBXO15	chromosome:C_jacchus3.2.1:13:1:117903854:1	111627036	111704027	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005747}  [Source:UniProtKB/TrEMBL;Acc:F7IC69]
ENSCJAG00000035322	NOVEL	protein_coding	ENSCJAG00000035322	scaffold:C_jacchus3.2.1:ACFV01179855.1:1:8878:1	718	2713	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049645}  [Source:UniProtKB/TrEMBL;Acc:H9KYE9]
ENSCJAG00000022091	KNOWN_BY_PROJECTION	protein_coding	P2RY6	chromosome:C_jacchus3.2.1:11:1:130397257:1	65485547	65516277	R	pyrimidinergic receptor P2Y, G-protein coupled, 6 [Source:HGNC Symbol;Acc:HGNC:8543]
ENSCJAG00000000526	KNOWN_BY_PROJECTION	protein_coding	CEBPB	chromosome:C_jacchus3.2.1:5:1:159171411:1	44085250	44086286	D	CCAAT/enhancer binding protein (C/EBP), beta [Source:HGNC Symbol;Acc:HGNC:1834]
ENSCJAG00000002001	KNOWN_BY_PROJECTION	protein_coding	PRRT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32722995	32727697	R	proline-rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
ENSCJAG00000002063	NOVEL	protein_coding	ENSCJAG00000002063	chromosome:C_jacchus3.2.1:12:1:121768101:1	39832145	39832731	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003731}  [Source:UniProtKB/TrEMBL;Acc:F7EL98]
ENSCJAG00000003126	KNOWN	protein_coding	NETO1	chromosome:C_jacchus3.2.1:13:1:117903854:1	110313452	110438849	R	Neuropilin and tolloid-like protein 1 isoform 3 {ECO:0000313|EMBL:JAB17692.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005732}  [Source:UniProtKB/TrEMBL;Acc:F7IEI1]
ENSCJAG00000015964	NOVEL	protein_coding	ENSCJAG00000015964	chromosome:C_jacchus3.2.1:11:1:130397257:1	65472509	65474705	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029396}  [Source:UniProtKB/TrEMBL;Acc:F7I326]
ENSCJAG00000000241	NOVEL	protein_coding	ENSCJAG00000000241	scaffold:C_jacchus3.2.1:ACFV01186377.1:1:8893:1	3048	8501	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022466}  [Source:UniProtKB/TrEMBL;Acc:H9KWX1]
ENSCJAG00000003005	KNOWN_BY_PROJECTION	protein_coding	SNUPN	chromosome:C_jacchus3.2.1:10:1:132174527:1	17815559	17845135	R	snurportin 1 [Source:HGNC Symbol;Acc:HGNC:14245]
ENSCJAG00000034743	NOVEL	protein_coding	ENSCJAG00000034743	chromosome:C_jacchus3.2.1:13:1:117903854:1	110179662	110180625	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041990}  [Source:UniProtKB/TrEMBL;Acc:F7FSN9]
ENSCJAG00000018691	NOVEL	protein_coding	ENSCJAG00000018691	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	50559	57645	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034769}  [Source:UniProtKB/TrEMBL;Acc:H9KXE9]
ENSCJAG00000018222	NOVEL	protein_coding	ENSCJAG00000018222	scaffold:C_jacchus3.2.1:GL285921.1:1:74814:1	67041	71159	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005216}  [Source:UniProtKB/TrEMBL;Acc:H9KVW4]
ENSCJAG00000002003	KNOWN	protein_coding	FKBPL	chromosome:C_jacchus3.2.1:4:1:171630274:1	32697175	32698785	R	FK506-binding protein-like {ECO:0000313|EMBL:JAB01874.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003608}  [Source:UniProtKB/TrEMBL;Acc:F7HA05]
ENSCJAG00000003119	KNOWN_BY_PROJECTION	protein_coding	CBLN2	chromosome:C_jacchus3.2.1:13:1:117903854:1	110094571	110102351	R	cerebellin 2 precursor [Source:HGNC Symbol;Acc:HGNC:1544]
ENSCJAG00000010996	KNOWN	protein_coding	RFX3	chromosome:C_jacchus3.2.1:1:1:210400635:1	104969087	105269206	R	Transcription factor RFX3 isoform b {ECO:0000313|EMBL:JAB15069.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020429}  [Source:UniProtKB/TrEMBL;Acc:F7ESI7]
ENSCJAG00000022864	KNOWN	protein_coding	SOCS6	chromosome:C_jacchus3.2.1:13:1:117903854:1	107945666	107982448	D	Suppressor of cytokine signaling 6 {ECO:0000313|EMBL:JAB02679.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041435}  [Source:UniProtKB/TrEMBL;Acc:F7HFR5]
ENSCJAG00000033258	NOVEL	protein_coding	ENSCJAG00000033258	chromosome:C_jacchus3.2.1:1:1:210400635:1	104736227	104752195	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049498}  [Source:UniProtKB/TrEMBL;Acc:F7AFE6]
ENSCJAG00000000524	KNOWN	protein_coding	TMEM189	chromosome:C_jacchus3.2.1:5:1:159171411:1	44020221	44052006	R	transmembrane protein 189  [Source:RefSeq peptide;Acc:NP_001192017]
ENSCJAG00000010995	NOVEL	protein_coding	ENSCJAG00000010995	chromosome:C_jacchus3.2.1:1:1:210400635:1	104587195	104587631	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020288}  [Source:UniProtKB/TrEMBL;Acc:F7DKX0]
ENSCJAG00000036984	KNOWN	protein_coding	UBE2V1	chromosome:C_jacchus3.2.1:5:1:159171411:1	43977611	44008873	R	Callithrix jacchus ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205089]
ENSCJAG00000007102	KNOWN	protein_coding	MGAT4A	chromosome:C_jacchus3.2.1:14:1:108792865:1	2771663	2893207	R	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform 1 {ECO:0000313|EMBL:JAB14050.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013240}  [Source:UniProtKB/TrEMBL;Acc:F6YHZ3]
ENSCJAG00000000518	KNOWN_BY_PROJECTION	protein_coding	SNAI1	chromosome:C_jacchus3.2.1:5:1:159171411:1	43873351	43878681	D	snail family zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:11128]
ENSCJAG00000015946	KNOWN_BY_PROJECTION	protein_coding	ARHGEF17	chromosome:C_jacchus3.2.1:11:1:130397257:1	65410367	65473592	R	Rho guanine nucleotide exchange factor (GEF) 17 [Source:HGNC Symbol;Acc:HGNC:21726]
ENSCJAG00000010419	KNOWN_BY_PROJECTION	protein_coding	PRDM9	chromosome:C_jacchus3.2.1:20:1:44557958:1	44500057	44514600	R	PR domain containing 9 [Source:HGNC Symbol;Acc:HGNC:13994]
ENSCJAG00000010446	NOVEL	protein_coding	ENSCJAG00000010446	chromosome:C_jacchus3.2.1:20:1:44557958:1	44468032	44469018	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019259}  [Source:UniProtKB/TrEMBL;Acc:F6TFE1]
ENSCJAG00000015619	KNOWN_BY_PROJECTION	protein_coding	PTPN9	chromosome:C_jacchus3.2.1:10:1:132174527:1	17700432	17810850	R	protein tyrosine phosphatase, non-receptor type 9 [Source:HGNC Symbol;Acc:HGNC:9661]
ENSCJAG00000015934	KNOWN	protein_coding	RELT	chromosome:C_jacchus3.2.1:11:1:130397257:1	65382480	65565416	R	Tumor necrosis factor receptor superfamily member 19L {ECO:0000313|EMBL:JAB10422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029356}  [Source:UniProtKB/TrEMBL;Acc:F7I7U0]
ENSCJAG00000010454	KNOWN	protein_coding	GAS8	chromosome:C_jacchus3.2.1:20:1:44557958:1	44442326	44468158	D	Growth arrest-specific protein 8 {ECO:0000313|EMBL:JAB21589.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019295}  [Source:UniProtKB/TrEMBL;Acc:F6SIA2]
ENSCJAG00000007091	KNOWN	protein_coding	DCTN2	chromosome:C_jacchus3.2.1:9:1:124281992:1	46355034	46372790	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013371}  [Source:UniProtKB/TrEMBL;Acc:F7AH76]
ENSCJAG00000015915	KNOWN	protein_coding	FAM168A	chromosome:C_jacchus3.2.1:11:1:130397257:1	65188797	65374327	D	Protein FAM168A {ECO:0000313|EMBL:JAB19090.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029314}  [Source:UniProtKB/TrEMBL;Acc:F7IEX3]
ENSCJAG00000007132	KNOWN	protein_coding	UNC50	chromosome:C_jacchus3.2.1:14:1:108792865:1	2755205	2767274	D	Protein unc-50 homolog {ECO:0000313|EMBL:JAB01706.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013257}  [Source:UniProtKB/TrEMBL;Acc:F6XXB4]
ENSCJAG00000000510	KNOWN	protein_coding	RNF114	chromosome:C_jacchus3.2.1:5:1:159171411:1	43832988	43850140	D	RING finger protein 114 {ECO:0000313|EMBL:JAB06174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000880}  [Source:UniProtKB/TrEMBL;Acc:F6U6P9]
ENSCJAG00000007139	KNOWN_BY_PROJECTION	protein_coding	COA5	chromosome:C_jacchus3.2.1:14:1:108792865:1	2746739	2755056	R	cytochrome c oxidase assembly factor 5 [Source:HGNC Symbol;Acc:HGNC:33848]
ENSCJAG00000003057	KNOWN_BY_PROJECTION	protein_coding	RTTN	chromosome:C_jacchus3.2.1:13:1:117903854:1	107672481	107853506	R	rotatin [Source:HGNC Symbol;Acc:HGNC:18654]
ENSCJAG00000010477	KNOWN_BY_PROJECTION	protein_coding	DBNDD1	chromosome:C_jacchus3.2.1:20:1:44557958:1	44428544	44442457	R	dysbindin (dystrobrevin binding protein 1) domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28455]
ENSCJAG00000015537	KNOWN	protein_coding	SIN3A	chromosome:C_jacchus3.2.1:10:1:132174527:1	17596453	17688101	R	Paired amphipathic helix protein Sin3a {ECO:0000313|EMBL:JAB09274.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044576}  [Source:UniProtKB/TrEMBL;Acc:F7FI69]
ENSCJAG00000000498	KNOWN_BY_PROJECTION	protein_coding	SPATA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	43804065	43813890	R	spermatogenesis associated 2 [Source:HGNC Symbol;Acc:HGNC:14681]
ENSCJAG00000010530	KNOWN_BY_PROJECTION	protein_coding	TUBB3	chromosome:C_jacchus3.2.1:20:1:44557958:1	44338020	44358208	D	tubulin, beta 3 class III [Source:HGNC Symbol;Acc:HGNC:20772]
ENSCJAG00000015909	KNOWN_BY_PROJECTION	protein_coding	PLEKHB1	chromosome:C_jacchus3.2.1:11:1:130397257:1	65122380	65139650	R	pleckstrin homology domain containing, family B (evectins) member 1 [Source:HGNC Symbol;Acc:HGNC:19079]
ENSCJAG00000010545	KNOWN	protein_coding	TCF25	chromosome:C_jacchus3.2.1:20:1:44557958:1	44291687	44333266	D	Transcription factor 25 {ECO:0000313|EMBL:JAB05858.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019546}  [Source:UniProtKB/TrEMBL;Acc:F6R706]
ENSCJAG00000003050	KNOWN_BY_PROJECTION	protein_coding	CD226	chromosome:C_jacchus3.2.1:13:1:117903854:1	107524898	107631320	R	CD226 molecule [Source:HGNC Symbol;Acc:HGNC:16961]
ENSCJAG00000010490	KNOWN	protein_coding	DEF8	chromosome:C_jacchus3.2.1:20:1:44557958:1	44280034	44387977	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019418}  [Source:UniProtKB/TrEMBL;Acc:F6U1A1]
ENSCJAG00000003043	KNOWN	protein_coding	DOK6	chromosome:C_jacchus3.2.1:13:1:117903854:1	107058985	107500920	D	Docking protein 6 {ECO:0000313|EMBL:JAB19981.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005527}  [Source:UniProtKB/TrEMBL;Acc:F7ILS8]
ENSCJAG00000007145	KNOWN	protein_coding	INPP4A	chromosome:C_jacchus3.2.1:14:1:108792865:1	2583410	2736050	D	Type I inositol 3,4-bisphosphate 4-phosphatase isoform c {ECO:0000313|EMBL:JAB03503.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013455}  [Source:UniProtKB/TrEMBL;Acc:F6W0Q3]
ENSCJAG00000002054	KNOWN_BY_PROJECTION	protein_coding	CCSER2	chromosome:C_jacchus3.2.1:12:1:121768101:1	39692941	39886067	R	coiled-coil serine-rich protein 2 [Source:HGNC Symbol;Acc:HGNC:29197]
ENSCJAG00000010917	KNOWN	protein_coding	KIAA0020	chromosome:C_jacchus3.2.1:1:1:210400635:1	104516061	104555356	R	Pumilio domain-containing protein KIAA0020 {ECO:0000313|EMBL:JAB02283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020282}  [Source:UniProtKB/TrEMBL;Acc:F7DKZ0]
ENSCJAG00000003033	KNOWN_BY_PROJECTION	protein_coding	CCDC102B	chromosome:C_jacchus3.2.1:13:1:117903854:1	106411200	106746062	D	coiled-coil domain containing 102B [Source:HGNC Symbol;Acc:HGNC:26295]
ENSCJAG00000010914	KNOWN_BY_PROJECTION	protein_coding	KCNV2	chromosome:C_jacchus3.2.1:1:1:210400635:1	104429745	104440991	D	potassium channel, voltage gated modifier subfamily V, member 2 [Source:HGNC Symbol;Acc:HGNC:19698]
ENSCJAG00000020533	KNOWN_BY_PROJECTION	protein_coding	GRID1	chromosome:C_jacchus3.2.1:12:1:121768101:1	38154057	38481786	D	glutamate receptor, ionotropic, delta 1 [Source:HGNC Symbol;Acc:HGNC:4575]
ENSCJAG00000035131	NOVEL	pseudogene	ENSCJAG00000035131	chromosome:C_jacchus3.2.1:12:1:121768101:1	38128217	38128599	R	<no descrition>
ENSCJAG00000016906	NOVEL	pseudogene	ENSCJAG00000016906	chromosome:C_jacchus3.2.1:12:1:121768101:1	37612142	37612649	R	<no descrition>
ENSCJAG00000002993	KNOWN	protein_coding	TMX3	chromosome:C_jacchus3.2.1:13:1:117903854:1	106374066	106411071	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005490}  [Source:UniProtKB/TrEMBL;Acc:F7HLF6]
ENSCJAG00000000466	KNOWN	protein_coding	SLC9A8	chromosome:C_jacchus3.2.1:5:1:159171411:1	43700833	43788031	D	Sodium/hydrogen exchanger {ECO:0000256|RuleBase:RU003722}  [Source:UniProtKB/TrEMBL;Acc:F6PN51]
ENSCJAG00000002988	NOVEL	pseudogene	ENSCJAG00000002988	chromosome:C_jacchus3.2.1:13:1:117903854:1	105290092	105292989	R	<no descrition>
ENSCJAG00000015331	KNOWN	protein_coding	SLC39A8	chromosome:C_jacchus3.2.1:3:1:190850796:1	91242618	91382858	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028320}; Zinc transporter ZIP8 isoform a {ECO:0000313|EMBL:JAB11827.1}  [Source:UniProtKB/TrEMBL;Acc:F7B861]
ENSCJAG00000036009	KNOWN_BY_PROJECTION	protein_coding	ATF6B	chromosome:C_jacchus3.2.1:4:1:171630274:1	32665943	32696764	R	activating transcription factor 6 beta [Source:HGNC Symbol;Acc:HGNC:2349]
ENSCJAG00000015878	KNOWN_BY_PROJECTION	protein_coding	RAB6C	chromosome:C_jacchus3.2.1:11:1:130397257:1	65011573	65115430	D	RAB6C, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:16525]
ENSCJAG00000002951	KNOWN_BY_PROJECTION	protein_coding	CDH19	chromosome:C_jacchus3.2.1:13:1:117903854:1	104331611	104432858	R	cadherin 19, type 2 [Source:HGNC Symbol;Acc:HGNC:1758]
ENSCJAG00000008177	NOVEL	protein_coding	ENSCJAG00000008177	chromosome:C_jacchus3.2.1:5:1:159171411:1	43526631	43541728	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015109}  [Source:UniProtKB/TrEMBL;Acc:F7DW91]
ENSCJAG00000017862	NOVEL	protein_coding	ENSCJAG00000017862	chromosome:C_jacchus3.2.1:5:1:159171411:1	43349040	43354550	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032953}  [Source:UniProtKB/TrEMBL;Acc:F7GQB2]
ENSCJAG00000007202	KNOWN	protein_coding	MBD6	chromosome:C_jacchus3.2.1:9:1:124281992:1	46348814	46354868	D	Methyl-CpG-binding domain protein 6 {ECO:0000313|EMBL:JAB08335.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013438}  [Source:UniProtKB/TrEMBL;Acc:F6WKL9]
ENSCJAG00000002895	KNOWN	protein_coding	CDH7	chromosome:C_jacchus3.2.1:13:1:117903854:1	103610464	103749147	D	Cadherin-7 preproprotein {ECO:0000313|EMBL:JAB31983.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005323}  [Source:UniProtKB/TrEMBL;Acc:F7ILV6]
ENSCJAG00000007236	KNOWN_BY_PROJECTION	protein_coding	CNGA3	chromosome:C_jacchus3.2.1:14:1:108792865:1	2456601	2516876	D	cyclic nucleotide gated channel alpha 3 [Source:HGNC Symbol;Acc:HGNC:2150]
ENSCJAG00000015867	KNOWN_BY_PROJECTION	protein_coding	MRPL48	chromosome:C_jacchus3.2.1:11:1:130397257:1	64872485	64948649	R	mitochondrial ribosomal protein L48 [Source:HGNC Symbol;Acc:HGNC:16653]
ENSCJAG00000007243	KNOWN_BY_PROJECTION	protein_coding	DDIT3	chromosome:C_jacchus3.2.1:9:1:124281992:1	46338903	46343929	R	DNA-damage-inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]
ENSCJAG00000010613	KNOWN	protein_coding	SPIRE2	chromosome:C_jacchus3.2.1:20:1:44557958:1	44265183	44288757	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019608}  [Source:UniProtKB/TrEMBL;Acc:F6PGZ9]
ENSCJAG00000007249	KNOWN	protein_coding	MARS	chromosome:C_jacchus3.2.1:9:1:124281992:1	46324703	46338960	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013482}  [Source:UniProtKB/TrEMBL;Acc:F6UUD2]
ENSCJAG00000015863	NOVEL	protein_coding	ENSCJAG00000015863	chromosome:C_jacchus3.2.1:11:1:130397257:1	64858846	64862526	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029208}  [Source:UniProtKB/TrEMBL;Acc:F7I0S1]
ENSCJAG00000007259	NOVEL	protein_coding	ENSCJAG00000007259	chromosome:C_jacchus3.2.1:14:1:108792865:1	2442411	2443059	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013514}  [Source:UniProtKB/TrEMBL;Acc:F6ZY80]
ENSCJAG00000002877	KNOWN	protein_coding	SERPINB8	chromosome:C_jacchus3.2.1:13:1:117903854:1	101917045	101934815	D	Serine proteinase inhibitor, clade B, member 8 isoform a (Predicted) {ECO:0000313|EMBL:ABY74572.1}; Serpin B8 isoform a {ECO:0000313|EMBL:JAB08501.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045647}  [Source:UniProtKB/TrEMBL;Acc:B0CMB1]
ENSCJAG00000011396	NOVEL	protein_coding	ENSCJAG00000011396	chromosome:C_jacchus3.2.1:14:1:108792865:1	2336127	2337860	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020945}  [Source:UniProtKB/TrEMBL;Acc:F7H0T8]
ENSCJAG00000016115	KNOWN	protein_coding	ZNFX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	43292392	43323809	R	NFX1-type zinc finger-containing protein 1 {ECO:0000313|EMBL:JAB08868.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029683}  [Source:UniProtKB/TrEMBL;Acc:F7INZ9]
ENSCJAG00000002859	NOVEL	protein_coding	ENSCJAG00000002859	chromosome:C_jacchus3.2.1:13:1:117903854:1	101879429	101900671	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005218}  [Source:UniProtKB/TrEMBL;Acc:F7I353]
ENSCJAG00000012597	NOVEL	protein_coding	ENSCJAG00000012597	chromosome:C_jacchus3.2.1:13:1:117903854:1	101850007	101856030	D	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:F7IDP1]
ENSCJAG00000003491	KNOWN_BY_PROJECTION	protein_coding	WAPAL	chromosome:C_jacchus3.2.1:12:1:121768101:1	37425363	37547984	D	wings apart-like homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:23293]
ENSCJAG00000015481	NOVEL	protein_coding	ENSCJAG00000015481	chromosome:C_jacchus3.2.1:10:1:132174527:1	17583253	17595465	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028590}  [Source:UniProtKB/TrEMBL;Acc:F6Z4E1]
ENSCJAG00000010772	KNOWN	protein_coding	VLDLR	chromosome:C_jacchus3.2.1:1:1:210400635:1	104323326	104361796	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020067}; Very low-density lipoprotein receptor isoform a {ECO:0000313|EMBL:JAB14495.1}  [Source:UniProtKB/TrEMBL;Acc:F7HHP9]
ENSCJAG00000006860	NOVEL	protein_coding	SERPINB2	chromosome:C_jacchus3.2.1:13:1:117903854:1	101783233	101795031	D	Serine proteinase inhibitor, clade B, member 2 (Predicted) {ECO:0000313|EMBL:ABY74570.1}; Serpin B10 {ECO:0000313|Ensembl:ENSCJAP00000012708}  [Source:UniProtKB/TrEMBL;Acc:B0CMA9]
ENSCJAG00000010686	KNOWN_BY_PROJECTION	protein_coding	FANCA	chromosome:C_jacchus3.2.1:20:1:44557958:1	44145737	44230991	R	Fanconi anemia, complementation group A [Source:HGNC Symbol;Acc:HGNC:3582]
ENSCJAG00000033719	NOVEL	protein_coding	SERPINB7	chromosome:C_jacchus3.2.1:13:1:117903854:1	101656998	101717181	D	Serine proteinase inhibitor, clade B, member 7 (Predicted) {ECO:0000313|EMBL:ABY74569.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012457}  [Source:UniProtKB/TrEMBL;Acc:B0CMA8]
ENSCJAG00000015382	KNOWN	protein_coding	NFKB1	chromosome:C_jacchus3.2.1:3:1:190850796:1	91021581	91150699	R	Nuclear factor NF-kappa-B p105 subunit isoform 2 {ECO:0000313|EMBL:JAB40165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028399}  [Source:UniProtKB/TrEMBL;Acc:F6Z5H5]
ENSCJAG00000011401	KNOWN_BY_PROJECTION	protein_coding	VWA3B	chromosome:C_jacchus3.2.1:14:1:108792865:1	2057133	2322308	D	von Willebrand factor A domain containing 3B [Source:HGNC Symbol;Acc:HGNC:28385]
ENSCJAG00000015828	KNOWN	protein_coding	PAAF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	64806734	64858705	R	Proteasomal ATPase-associated factor 1 isoform 2 {ECO:0000313|EMBL:JAB05458.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029203}  [Source:UniProtKB/TrEMBL;Acc:F7I0S5]
ENSCJAG00000015486	NOVEL	pseudogene	ENSCJAG00000015486	chromosome:C_jacchus3.2.1:3:1:190850796:1	90893926	90895163	R	<no descrition>
ENSCJAG00000010609	NOVEL	protein_coding	ENSCJAG00000010609	chromosome:C_jacchus3.2.1:12:1:121768101:1	37312222	37316433	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019613}  [Source:UniProtKB/TrEMBL;Acc:F6PGQ6]
ENSCJAG00000006825	NOVEL	protein_coding	SERPINB4	chromosome:C_jacchus3.2.1:13:1:117903854:1	101572192	101579174	R	Serine proteinase inhibitor, clade B, member 4 (Predicted) {ECO:0000313|EMBL:ABY74567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012687}  [Source:UniProtKB/TrEMBL;Acc:B0CMA6]
ENSCJAG00000015471	NOVEL	protein_coding	ENSCJAG00000015471	chromosome:C_jacchus3.2.1:10:1:132174527:1	17575375	17582501	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028495}  [Source:UniProtKB/TrEMBL;Acc:F6UGH3]
ENSCJAG00000015648	KNOWN	protein_coding	PPCDC	chromosome:C_jacchus3.2.1:10:1:132174527:1	17382670	17411306	D	Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:JAB06039.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028822}  [Source:UniProtKB/TrEMBL;Acc:F6XC57]
ENSCJAG00000015635	KNOWN_BY_PROJECTION	protein_coding	SCAMP5	chromosome:C_jacchus3.2.1:10:1:132174527:1	17375493	17377822	D	secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
ENSCJAG00000036383	KNOWN_BY_PROJECTION	protein_coding	OPN4	chromosome:C_jacchus3.2.1:12:1:121768101:1	37242664	37259880	R	opsin 4 [Source:HGNC Symbol;Acc:HGNC:14449]
ENSCJAG00000015630	NOVEL	pseudogene	ENSCJAG00000015630	chromosome:C_jacchus3.2.1:10:1:132174527:1	17312164	17314281	R	<no descrition>
ENSCJAG00000015613	KNOWN	protein_coding	ENSCJAG00000015613	chromosome:C_jacchus3.2.1:10:1:132174527:1	17278131	17296390	R	Cytochrome c oxidase subunit 5A, mitochondrial {ECO:0000313|EMBL:JAB12533.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028776}  [Source:UniProtKB/TrEMBL;Acc:F7A326]
ENSCJAG00000016135	KNOWN_BY_PROJECTION	protein_coding	DDX27	chromosome:C_jacchus3.2.1:5:1:159171411:1	43267035	43289667	D	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:HGNC Symbol;Acc:HGNC:15837]
ENSCJAG00000015600	KNOWN	protein_coding	C15ORF17	chromosome:C_jacchus3.2.1:10:1:132174527:1	17259778	17264456	R	Protein FAM219B {ECO:0000313|EMBL:JAB06813.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028748}  [Source:UniProtKB/TrEMBL;Acc:F7AKV0]
ENSCJAG00000015823	KNOWN	protein_coding	DNAJB13	chromosome:C_jacchus3.2.1:11:1:130397257:1	64774483	64796083	R	DnaJ homolog subfamily B member 13 {ECO:0000313|EMBL:JAB18541.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031302}  [Source:UniProtKB/TrEMBL;Acc:F7I104]
ENSCJAG00000032440	KNOWN	protein_coding	UCP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	64751598	64770156	D	Mitochondrial uncoupling protein 2 {ECO:0000313|EMBL:JAB02128.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029114}  [Source:UniProtKB/TrEMBL;Acc:F7IHA8]
ENSCJAG00000015821	NOVEL	protein_coding	ENSCJAG00000015821	chromosome:C_jacchus3.2.1:11:1:130397257:1	64739612	64740461	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029137}  [Source:UniProtKB/TrEMBL;Acc:F7ICK5]
ENSCJAG00000006802	NOVEL	protein_coding	SERPINB13	chromosome:C_jacchus3.2.1:13:1:117903854:1	101529332	101545440	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012628}  [Source:UniProtKB/TrEMBL;Acc:F6QB65]
ENSCJAG00000011421	KNOWN	protein_coding	TMEM131	chromosome:C_jacchus3.2.1:14:1:108792865:1	1702258	1962641	R	Transmembrane protein 131 {ECO:0000313|EMBL:JAB37799.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021084}  [Source:UniProtKB/TrEMBL;Acc:F6TUN3]
ENSCJAG00000007264	KNOWN_BY_PROJECTION	protein_coding	ARHGAP9	chromosome:C_jacchus3.2.1:9:1:124281992:1	46300071	46590669	R	Rho GTPase activating protein 9 [Source:HGNC Symbol;Acc:HGNC:14130]
ENSCJAG00000015807	KNOWN_BY_PROJECTION	protein_coding	UCP3	chromosome:C_jacchus3.2.1:11:1:130397257:1	64726948	64737841	D	uncoupling protein 3 (mitochondrial, proton carrier) [Source:HGNC Symbol;Acc:HGNC:12519]
ENSCJAG00000010650	KNOWN_BY_PROJECTION	protein_coding	VPS9D1	chromosome:C_jacchus3.2.1:20:1:44557958:1	44117476	44278045	R	VPS9 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13526]
ENSCJAG00000010721	KNOWN_BY_PROJECTION	protein_coding	ZNF276	chromosome:C_jacchus3.2.1:20:1:44557958:1	44134580	44146773	D	zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
ENSCJAG00000015581	KNOWN_BY_PROJECTION	protein_coding	MPI	chromosome:C_jacchus3.2.1:10:1:132174527:1	17249035	17256394	D	mannose phosphate isomerase [Source:HGNC Symbol;Acc:HGNC:7216]
ENSCJAG00000010745	KNOWN	protein_coding	SPATA2L	chromosome:C_jacchus3.2.1:20:1:44557958:1	44103595	44108108	R	Spermatogenesis-associated protein 2-like protein {ECO:0000313|EMBL:JAB03706.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019797}  [Source:UniProtKB/TrEMBL;Acc:F6WCZ3]
ENSCJAG00000015764	KNOWN_BY_PROJECTION	protein_coding	C2CD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	64532441	64722311	D	C2 calcium-dependent domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24564]
ENSCJAG00000006731	KNOWN	protein_coding	SERPINB10	chromosome:C_jacchus3.2.1:13:1:117903854:1	101529168	101813481	D	Serpin B10  [Source:UniProtKB/Swiss-Prot;Acc:B0CMB0]
ENSCJAG00000011481	KNOWN_BY_PROJECTION	protein_coding	ZAP70	chromosome:C_jacchus3.2.1:14:1:108792865:1	1658639	1683198	D	zeta-chain (TCR) associated protein kinase 70kDa [Source:HGNC Symbol;Acc:HGNC:12858]
ENSCJAG00000016233	KNOWN	protein_coding	STAU1	chromosome:C_jacchus3.2.1:5:1:159171411:1	43154428	43200681	R	Double-stranded RNA-binding protein Staufen homolog 1 isoform b {ECO:0000313|EMBL:JAB10195.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029982}  [Source:UniProtKB/TrEMBL;Acc:F7I2K9]
ENSCJAG00000015423	KNOWN_BY_PROJECTION	protein_coding	MANBA	chromosome:C_jacchus3.2.1:3:1:190850796:1	90888931	91008990	D	mannosidase, beta A, lysosomal [Source:HGNC Symbol;Acc:HGNC:6831]
ENSCJAG00000033072	NOVEL	protein_coding	ENSCJAG00000033072	chromosome:C_jacchus3.2.1:14:1:108792865:1	1569475	1570843	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049351}  [Source:UniProtKB/TrEMBL;Acc:F6YGZ9]
ENSCJAG00000035996	KNOWN_BY_PROJECTION	protein_coding	SERPINB12	chromosome:C_jacchus3.2.1:13:1:117903854:1	101497477	101511228	D	serpin peptidase inhibitor, clade B (ovalbumin), member 12 [Source:HGNC Symbol;Acc:HGNC:14220]
ENSCJAG00000037297	KNOWN_BY_PROJECTION	protein_coding	SERPINB5	chromosome:C_jacchus3.2.1:13:1:117903854:1	101424033	101443588	D	serpin peptidase inhibitor, clade B (ovalbumin), member 5 [Source:HGNC Symbol;Acc:HGNC:8949]
ENSCJAG00000015565	KNOWN	protein_coding	SCAMP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	17202210	17232819	R	Secretory carrier-associated membrane protein 2 {ECO:0000313|EMBL:JAB09743.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028687}  [Source:UniProtKB/TrEMBL;Acc:F6UFC3]
ENSCJAG00000036881	NOVEL	pseudogene	ENSCJAG00000036881	chromosome:C_jacchus3.2.1:3:1:190850796:1	90843306	90844519	D	<no descrition>
ENSCJAG00000006696	KNOWN_BY_PROJECTION	protein_coding	VPS4B	chromosome:C_jacchus3.2.1:13:1:117903854:1	101330117	101349432	R	vacuolar protein sorting 4 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:10895]
ENSCJAG00000010752	KNOWN	protein_coding	CDK10	chromosome:C_jacchus3.2.1:20:1:44557958:1	44094285	44103600	D	Cyclin-dependent kinase 10 isoform a {ECO:0000313|EMBL:JAB24972.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019813}  [Source:UniProtKB/TrEMBL;Acc:F7CNF7]
ENSCJAG00000008050	KNOWN_BY_PROJECTION	protein_coding	FAM178B	chromosome:C_jacchus3.2.1:14:1:108792865:1	1469054	1564327	R	family with sequence similarity 178, member B [Source:HGNC Symbol;Acc:HGNC:28036]
ENSCJAG00000015492	KNOWN	protein_coding	UBE2D3	chromosome:C_jacchus3.2.1:3:1:190850796:1	90787064	90856850	D	Ubiquitin-conjugating enzyme E2 D3 isoform 1 {ECO:0000313|EMBL:JAB13297.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028579}  [Source:UniProtKB/TrEMBL;Acc:F6Z536]
ENSCJAG00000010710	KNOWN_BY_PROJECTION	protein_coding	SMARCA2	chromosome:C_jacchus3.2.1:1:1:210400635:1	103701280	103878001	D	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [Source:HGNC Symbol;Acc:HGNC:11098]
ENSCJAG00000015551	KNOWN_BY_PROJECTION	protein_coding	ULK3	chromosome:C_jacchus3.2.1:10:1:132174527:1	17194187	17200386	R	unc-51 like kinase 3 [Source:HGNC Symbol;Acc:HGNC:19703]
ENSCJAG00000006656	KNOWN_BY_PROJECTION	protein_coding	BCL2	chromosome:C_jacchus3.2.1:13:1:117903854:1	101065215	101260458	R	B-cell CLL/lymphoma 2 [Source:HGNC Symbol;Acc:HGNC:990]
ENSCJAG00000006662	KNOWN	protein_coding	KDSR	chromosome:C_jacchus3.2.1:13:1:117903854:1	101273072	101315380	R	3-ketodihydrosphingosine reductase {ECO:0000313|EMBL:JAB02040.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012367}  [Source:UniProtKB/TrEMBL;Acc:F7H8H1]
ENSCJAG00000037845	KNOWN_BY_PROJECTION	protein_coding	SPATA33	chromosome:C_jacchus3.2.1:20:1:44557958:1	44068287	44084186	D	spermatogenesis associated 33 [Source:HGNC Symbol;Acc:HGNC:26463]
ENSCJAG00000010826	KNOWN_BY_PROJECTION	protein_coding	CHMP1A	chromosome:C_jacchus3.2.1:20:1:44557958:1	44058988	44068015	R	charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:HGNC:8740]
ENSCJAG00000008018	KNOWN_BY_PROJECTION	protein_coding	SEMA4C	chromosome:C_jacchus3.2.1:14:1:108792865:1	1451882	1462957	R	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:HGNC Symbol;Acc:HGNC:10731]
ENSCJAG00000008006	KNOWN	protein_coding	ANKRD39	chromosome:C_jacchus3.2.1:14:1:108792865:1	1439029	1450049	R	Ankyrin repeat domain-containing protein 39 {ECO:0000313|EMBL:JAB02429.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014801}  [Source:UniProtKB/TrEMBL;Acc:F7IBH3]
ENSCJAG00000007324	KNOWN_BY_PROJECTION	protein_coding	GLI1	chromosome:C_jacchus3.2.1:9:1:124281992:1	46285340	46300071	D	GLI family zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:4317]
ENSCJAG00000010841	KNOWN_BY_PROJECTION	protein_coding	DPEP1	chromosome:C_jacchus3.2.1:20:1:44557958:1	44035546	44053771	D	dipeptidase 1 (renal) [Source:HGNC Symbol;Acc:HGNC:3002]
ENSCJAG00000003250	KNOWN_BY_PROJECTION	protein_coding	PHLPP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	100639534	100889829	D	PH domain and leucine rich repeat protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:20610]
ENSCJAG00000015734	KNOWN	protein_coding	PPME1	chromosome:C_jacchus3.2.1:11:1:130397257:1	64456565	64532208	R	Protein phosphatase methylesterase 1 {ECO:0000256|PIRNR:PIRNR022950}  [Source:UniProtKB/TrEMBL;Acc:F7HYK0]
ENSCJAG00000010770	KNOWN_BY_PROJECTION	protein_coding	CPNE7	chromosome:C_jacchus3.2.1:20:1:44557958:1	43992184	44009794	D	copine VII [Source:HGNC Symbol;Acc:HGNC:2320]
ENSCJAG00000007975	KNOWN_BY_PROJECTION	protein_coding	ANKRD23	chromosome:C_jacchus3.2.1:14:1:108792865:1	1430841	1436435	R	ankyrin repeat domain 23 [Source:HGNC Symbol;Acc:HGNC:24470]
ENSCJAG00000015530	KNOWN	protein_coding	CISD2	chromosome:C_jacchus3.2.1:3:1:190850796:1	90766767	90786984	R	CDGSH iron-sulfur domain-containing protein 2 {ECO:0000313|EMBL:JAB20105.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028587}  [Source:UniProtKB/TrEMBL;Acc:F6Z4H8]
ENSCJAG00000010862	KNOWN_BY_PROJECTION	protein_coding	CHCHD2	chromosome:C_jacchus3.2.1:20:1:44557958:1	43979549	43979952	R	coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21645]
ENSCJAG00000007359	KNOWN_BY_PROJECTION	protein_coding	INHBC	chromosome:C_jacchus3.2.1:9:1:124281992:1	46257474	46273855	D	inhibin, beta C [Source:HGNC Symbol;Acc:HGNC:6068]
ENSCJAG00000007356	KNOWN_BY_PROJECTION	protein_coding	INHBE	chromosome:C_jacchus3.2.1:9:1:124281992:1	46278037	46283392	D	inhibin, beta E [Source:HGNC Symbol;Acc:HGNC:24029]
ENSCJAG00000003312	KNOWN_BY_PROJECTION	protein_coding	ZCCHC2	chromosome:C_jacchus3.2.1:13:1:117903854:1	100455740	100514214	D	zinc finger, CCHC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:22916]
ENSCJAG00000010864	KNOWN_BY_PROJECTION	protein_coding	ANKRD11	chromosome:C_jacchus3.2.1:20:1:44557958:1	43753811	43901703	R	ankyrin repeat domain 11 [Source:HGNC Symbol;Acc:HGNC:21316]
ENSCJAG00000007962	KNOWN_BY_PROJECTION	protein_coding	CNNM3	chromosome:C_jacchus3.2.1:14:1:108792865:1	1410249	1427031	D	cyclin and CBS domain divalent metal cation transport mediator 3 [Source:HGNC Symbol;Acc:HGNC:104]
ENSCJAG00000010690	KNOWN_BY_PROJECTION	protein_coding	DMRT2	chromosome:C_jacchus3.2.1:1:1:210400635:1	102682688	102690597	D	doublesex and mab-3 related transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:2935]
ENSCJAG00000003331	KNOWN_BY_PROJECTION	protein_coding	TNFRSF11A	chromosome:C_jacchus3.2.1:13:1:117903854:1	100273039	100292472	D	tumor necrosis factor receptor superfamily, member 11a, NFKB activator [Source:HGNC Symbol;Acc:HGNC:11908]
ENSCJAG00000036892	KNOWN	protein_coding	SLC22A31	chromosome:C_jacchus3.2.1:20:1:44557958:1	43678049	43683310	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020030}  [Source:UniProtKB/TrEMBL;Acc:F7DL30]
ENSCJAG00000010892	KNOWN	protein_coding	ZNF778	chromosome:C_jacchus3.2.1:20:1:44557958:1	43690695	43701324	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020079}  [Source:UniProtKB/TrEMBL;Acc:F7HCK8]
ENSCJAG00000007949	KNOWN_BY_PROJECTION	protein_coding	CNNM4	chromosome:C_jacchus3.2.1:14:1:108792865:1	1343216	1405526	D	cyclin and CBS domain divalent metal cation transport mediator 4 [Source:HGNC Symbol;Acc:HGNC:105]
ENSCJAG00000011521	KNOWN_BY_PROJECTION	protein_coding	LDB3	chromosome:C_jacchus3.2.1:12:1:121768101:1	37171842	37242719	R	LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:15710]
ENSCJAG00000015710	KNOWN_BY_PROJECTION	protein_coding	P4HA3	chromosome:C_jacchus3.2.1:11:1:130397257:1	64391766	64443297	D	prolyl 4-hydroxylase, alpha polypeptide III [Source:HGNC Symbol;Acc:HGNC:30135]
ENSCJAG00000003333	KNOWN	protein_coding	KIAA1468	chromosome:C_jacchus3.2.1:13:1:117903854:1	100105610	100228860	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006105}  [Source:UniProtKB/TrEMBL;Acc:F7F5W9]
ENSCJAG00000010899	KNOWN_BY_PROJECTION	protein_coding	CDH15	chromosome:C_jacchus3.2.1:20:1:44557958:1	43663447	43677184	D	cadherin 15, type 1, M-cadherin (myotubule) [Source:HGNC Symbol;Acc:HGNC:1754]
ENSCJAG00000010926	NOVEL	protein_coding	ENSCJAG00000010926	chromosome:C_jacchus3.2.1:20:1:44557958:1	43648294	43648709	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020141}  [Source:UniProtKB/TrEMBL;Acc:F7GRK5]
ENSCJAG00000010681	KNOWN_BY_PROJECTION	protein_coding	DMRT3	chromosome:C_jacchus3.2.1:1:1:210400635:1	102602313	102618215	D	doublesex and mab-3 related transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:13909]
ENSCJAG00000010667	KNOWN_BY_PROJECTION	protein_coding	DMRT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	102470491	102594414	D	doublesex and mab-3 related transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2934]
ENSCJAG00000010928	KNOWN_BY_PROJECTION	protein_coding	ACSF3	chromosome:C_jacchus3.2.1:20:1:44557958:1	43566904	43628892	D	acyl-CoA synthetase family member 3 [Source:HGNC Symbol;Acc:HGNC:27288]
ENSCJAG00000007901	KNOWN	protein_coding	LMAN2L	chromosome:C_jacchus3.2.1:14:1:108792865:1	1287232	1321644	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042170}; VIP36-like protein isoform 2 {ECO:0000313|EMBL:JAB10039.1}  [Source:UniProtKB/TrEMBL;Acc:F6UMB0]
ENSCJAG00000035902	NOVEL	protein_coding	ENSCJAG00000035902	chromosome:C_jacchus3.2.1:20:1:44557958:1	43429648	43753839	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052460}  [Source:UniProtKB/TrEMBL;Acc:F7I2E5]
ENSCJAG00000034166	NOVEL	protein_coding	ENSCJAG00000034166	chromosome:C_jacchus3.2.1:13:1:117903854:1	99874045	99874924	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047645}  [Source:UniProtKB/TrEMBL;Acc:F7GXE1]
ENSCJAG00000013021	KNOWN_BY_PROJECTION	protein_coding	CBFA2T3	chromosome:C_jacchus3.2.1:20:1:44557958:1	43364561	43462941	R	core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:HGNC Symbol;Acc:HGNC:1537]
ENSCJAG00000015692	KNOWN	protein_coding	PGM2L1	chromosome:C_jacchus3.2.1:11:1:130397257:1	64309127	64368465	D	Glucose 1,6-bisphosphate synthase {ECO:0000313|EMBL:JAB19710.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028907}  [Source:UniProtKB/TrEMBL;Acc:F6UD41]
ENSCJAG00000003367	KNOWN_BY_PROJECTION	protein_coding	PIGN	chromosome:C_jacchus3.2.1:13:1:117903854:1	99831613	100085837	R	phosphatidylinositol glycan anchor biosynthesis, class N [Source:HGNC Symbol;Acc:HGNC:8967]
ENSCJAG00000022876	KNOWN	protein_coding	RNF152	chromosome:C_jacchus3.2.1:13:1:117903854:1	99724631	99805489	R	E3 ubiquitin-protein ligase RNF152 {ECO:0000313|EMBL:JAB02033.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041447}  [Source:UniProtKB/TrEMBL;Acc:F7HAL4]
ENSCJAG00000022090	KNOWN_BY_PROJECTION	protein_coding	KCNE3	chromosome:C_jacchus3.2.1:11:1:130397257:1	64253985	64258117	D	potassium channel, voltage gated subfamily E regulatory beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
ENSCJAG00000015688	KNOWN	protein_coding	LIPT2	chromosome:C_jacchus3.2.1:11:1:130397257:1	64229486	64231362	D	Putative lipoyltransferase 2, mitochondrial {ECO:0000256|PIRNR:PIRNR016262}  [Source:UniProtKB/TrEMBL;Acc:F6W5F0]
ENSCJAG00000015534	KNOWN_BY_PROJECTION	protein_coding	SLC9B1	chromosome:C_jacchus3.2.1:3:1:190850796:1	90650881	90770798	D	solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 [Source:HGNC Symbol;Acc:HGNC:24244]
ENSCJAG00000010595	KNOWN_BY_PROJECTION	protein_coding	KANK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	102147383	102474974	D	KN motif and ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:HGNC:19309]
ENSCJAG00000003409	KNOWN	protein_coding	CDH20	chromosome:C_jacchus3.2.1:13:1:117903854:1	99248611	99474800	D	Cadherin-20 preproprotein {ECO:0000313|EMBL:JAB12708.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006245}  [Source:UniProtKB/TrEMBL;Acc:F7GWC6]
ENSCJAG00000010592	NOVEL	protein_coding	ENSCJAG00000010592	chromosome:C_jacchus3.2.1:1:1:210400635:1	101886132	101889095	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019522}  [Source:UniProtKB/TrEMBL;Acc:F6RJF6]
ENSCJAG00000003448	NOVEL	pseudogene	ENSCJAG00000003448	chromosome:C_jacchus3.2.1:13:1:117903854:1	98692684	98692930	R	<no descrition>
ENSCJAG00000017251	NOVEL	protein_coding	ENSCJAG00000017251	chromosome:C_jacchus3.2.1:13:1:117903854:1	97855574	97858395	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048417}  [Source:UniProtKB/TrEMBL;Acc:F7E4S4]
ENSCJAG00000003449	KNOWN	protein_coding	PMAIP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	97784893	97787854	D	Phorbol-12-myristate-13-acetate-induced protein 1 {ECO:0000313|EMBL:JAB03143.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006257}  [Source:UniProtKB/TrEMBL;Acc:F7GW45]
ENSCJAG00000011555	KNOWN	protein_coding	BMPR1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	36976215	37143860	R	Bone morphogenetic protein receptor type-1A {ECO:0000313|EMBL:JAB04148.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021275}  [Source:UniProtKB/TrEMBL;Acc:F6QTD3]
ENSCJAG00000003451	NOVEL	protein_coding	ENSCJAG00000003451	chromosome:C_jacchus3.2.1:13:1:117903854:1	97728441	97729389	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006266}  [Source:UniProtKB/TrEMBL;Acc:F7GR24]
ENSCJAG00000015657	KNOWN	protein_coding	POLD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	64089733	64151323	R	DNA polymerase delta subunit 3 {ECO:0000313|EMBL:JAB19472.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049992}  [Source:UniProtKB/TrEMBL;Acc:F7AUU9]
ENSCJAG00000003456	KNOWN_BY_PROJECTION	protein_coding	CCBE1	chromosome:C_jacchus3.2.1:13:1:117903854:1	97332869	97387233	R	collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
ENSCJAG00000015568	KNOWN	protein_coding	SLC9B2	chromosome:C_jacchus3.2.1:3:1:190850796:1	90582440	90644564	D	Mitochondrial sodium/hydrogen exchanger 9B2 {ECO:0000313|EMBL:JAB03138.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028691}  [Source:UniProtKB/TrEMBL;Acc:F6UF28]
ENSCJAG00000003460	KNOWN	protein_coding	LMAN1	chromosome:C_jacchus3.2.1:13:1:117903854:1	97235299	97261356	R	Protein ERGIC-53 {ECO:0000313|EMBL:JAB07749.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006351}  [Source:UniProtKB/TrEMBL;Acc:F7ED66]
ENSCJAG00000016296	KNOWN	protein_coding	CSE1L	chromosome:C_jacchus3.2.1:5:1:159171411:1	43079063	43137578	D	Exportin-2 isoform 2 {ECO:0000313|EMBL:JAB28239.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030235}  [Source:UniProtKB/TrEMBL;Acc:F7BAH9]
ENSCJAG00000003500	KNOWN_BY_PROJECTION	protein_coding	CPLX4	chromosome:C_jacchus3.2.1:13:1:117903854:1	97196652	97223472	R	complexin 4 [Source:HGNC Symbol;Acc:HGNC:24330]
ENSCJAG00000011588	KNOWN_BY_PROJECTION	protein_coding	MMRN2	chromosome:C_jacchus3.2.1:12:1:121768101:1	36941154	36965422	D	multimerin 2 [Source:HGNC Symbol;Acc:HGNC:19888]
ENSCJAG00000003509	KNOWN_BY_PROJECTION	protein_coding	RAX	chromosome:C_jacchus3.2.1:13:1:117903854:1	97168124	97172983	R	retina and anterior neural fold homeobox [Source:HGNC Symbol;Acc:HGNC:18662]
ENSCJAG00000015616	KNOWN_BY_PROJECTION	protein_coding	CHRDL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	63911691	64036665	D	chordin-like 2 [Source:HGNC Symbol;Acc:HGNC:24168]
ENSCJAG00000002050	KNOWN_BY_PROJECTION	protein_coding	TNXB	chromosome:C_jacchus3.2.1:4:1:171630274:1	32599617	32666011	R	tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
ENSCJAG00000003515	KNOWN_BY_PROJECTION	protein_coding	GRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	97134338	97144742	D	gastrin-releasing peptide [Source:HGNC Symbol;Acc:HGNC:4605]
ENSCJAG00000003521	KNOWN	protein_coding	SEC11C	chromosome:C_jacchus3.2.1:13:1:117903854:1	97061688	97081007	D	Signal peptidase complex catalytic subunit SEC11C {ECO:0000313|EMBL:JAB05899.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006412}  [Source:UniProtKB/TrEMBL;Acc:F7HBF4]
ENSCJAG00000007365	KNOWN	protein_coding	R3HDM2	chromosome:C_jacchus3.2.1:9:1:124281992:1	46056069	46123671	R	R3H domain-containing protein 2 {ECO:0000313|EMBL:JAB03415.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047351}  [Source:UniProtKB/TrEMBL;Acc:F7HX02]
ENSCJAG00000034578	NOVEL	protein_coding	ENSCJAG00000034578	chromosome:C_jacchus3.2.1:13:1:117903854:1	96921093	96993860	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049034}  [Source:UniProtKB/TrEMBL;Acc:F6XYV0]
ENSCJAG00000003543	KNOWN	protein_coding	ZNF532	chromosome:C_jacchus3.2.1:13:1:117903854:1	96770604	96908028	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006470}; Zinc finger protein 532 {ECO:0000313|EMBL:JAB10981.1}  [Source:UniProtKB/TrEMBL;Acc:F7GQT2]
ENSCJAG00000010485	KNOWN_BY_PROJECTION	protein_coding	DOCK8	chromosome:C_jacchus3.2.1:1:1:210400635:1	101849202	102105023	D	dedicator of cytokinesis 8 [Source:HGNC Symbol;Acc:HGNC:19191]
ENSCJAG00000003592	NOVEL	protein_coding	ENSCJAG00000003592	chromosome:C_jacchus3.2.1:13:1:117903854:1	96588262	96589784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006515}  [Source:UniProtKB/TrEMBL;Acc:F7FH58]
ENSCJAG00000015547	KNOWN	protein_coding	CPLX3	chromosome:C_jacchus3.2.1:10:1:132174527:1	17182073	17185858	D	Complexin-3 {ECO:0000313|EMBL:JAB13089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028625}  [Source:UniProtKB/TrEMBL;Acc:F6WRU7]
ENSCJAG00000003580	KNOWN_BY_PROJECTION	protein_coding	MALT1	chromosome:C_jacchus3.2.1:13:1:117903854:1	96564963	96638090	D	MALT1 paracaspase [Source:HGNC Symbol;Acc:HGNC:6819]
ENSCJAG00000015507	KNOWN_BY_PROJECTION	protein_coding	LMAN1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	17168388	17180996	D	lectin, mannose-binding, 1 like [Source:HGNC Symbol;Acc:HGNC:6632]
ENSCJAG00000003594	KNOWN_BY_PROJECTION	protein_coding	ALPK2	chromosome:C_jacchus3.2.1:13:1:117903854:1	96409200	96505518	R	alpha-kinase 2 [Source:HGNC Symbol;Acc:HGNC:20565]
ENSCJAG00000015610	KNOWN_BY_PROJECTION	protein_coding	RNF169	chromosome:C_jacchus3.2.1:11:1:130397257:1	63887127	63944150	R	ring finger protein 169 [Source:HGNC Symbol;Acc:HGNC:26961]
ENSCJAG00000010484	NOVEL	protein_coding	ENSCJAG00000010484	chromosome:C_jacchus3.2.1:1:1:210400635:1	101848643	101849864	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019341}  [Source:UniProtKB/TrEMBL;Acc:F6R8J0]
ENSCJAG00000005548	NOVEL	protein_coding	ENSCJAG00000005548	chromosome:C_jacchus3.2.1:1:1:210400635:1	101812408	101813858	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019327}  [Source:UniProtKB/TrEMBL;Acc:F6RKA7]
ENSCJAG00000010448	NOVEL	protein_coding	ENSCJAG00000010448	chromosome:C_jacchus3.2.1:1:1:210400635:1	101783081	101789528	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019289}  [Source:UniProtKB/TrEMBL;Acc:F6SIU4]
ENSCJAG00000011615	KNOWN	protein_coding	SNCG	chromosome:C_jacchus3.2.1:12:1:121768101:1	36935586	36940239	R	Gamma-synuclein {ECO:0000313|EMBL:JAB01666.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021348}  [Source:UniProtKB/TrEMBL;Acc:F6U4X0]
ENSCJAG00000011625	KNOWN	protein_coding	ADIRF	chromosome:C_jacchus3.2.1:12:1:121768101:1	36926913	36930146	R	Adipose most abundant gene transcript 2 protein {ECO:0000313|EMBL:JAB16788.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021351}  [Source:UniProtKB/TrEMBL;Acc:F6U3V0]
ENSCJAG00000015584	KNOWN	protein_coding	BDH2	chromosome:C_jacchus3.2.1:3:1:190850796:1	90557129	90580366	D	3-hydroxybutyrate dehydrogenase type 2 {ECO:0000313|EMBL:JAB45649.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028704}  [Source:UniProtKB/TrEMBL;Acc:F7BMB1]
ENSCJAG00000015587	KNOWN_BY_PROJECTION	protein_coding	XRRA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	63757056	63880991	D	X-ray radiation resistance associated 1 [Source:HGNC Symbol;Acc:HGNC:18868]
ENSCJAG00000010423	NOVEL	protein_coding	ENSCJAG00000010423	chromosome:C_jacchus3.2.1:1:1:210400635:1	101731352	101757286	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019248}  [Source:UniProtKB/TrEMBL;Acc:F6TRB1]
ENSCJAG00000013011	KNOWN	protein_coding	TRAPPC2L	chromosome:C_jacchus3.2.1:20:1:44557958:1	43340596	43345747	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023879}  [Source:UniProtKB/TrEMBL;Acc:F7H2B7]
ENSCJAG00000012059	NOVEL	pseudogene	ENSCJAG00000012059	chromosome:C_jacchus3.2.1:1:1:210400635:1	101540471	101541814	D	<no descrition>
ENSCJAG00000032275	NOVEL	protein_coding	ENSCJAG00000032275	chromosome:C_jacchus3.2.1:1:1:210400635:1	101514081	101531177	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019239}  [Source:UniProtKB/TrEMBL;Acc:F6U1W5]
ENSCJAG00000012993	KNOWN_BY_PROJECTION	protein_coding	GALNS	chromosome:C_jacchus3.2.1:20:1:44557958:1	43295573	43340322	R	galactosamine (N-acetyl)-6-sulfatase [Source:HGNC Symbol;Acc:HGNC:4122]
ENSCJAG00000037826	KNOWN_BY_PROJECTION	protein_coding	STAC3	chromosome:C_jacchus3.2.1:9:1:124281992:1	46048549	46058019	R	SH3 and cysteine rich domain 3 [Source:HGNC Symbol;Acc:HGNC:28423]
ENSCJAG00000012990	KNOWN_BY_PROJECTION	protein_coding	APRT	chromosome:C_jacchus3.2.1:20:1:44557958:1	43290977	43293423	R	adenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]
ENSCJAG00000007780	KNOWN_BY_PROJECTION	protein_coding	FER1L5	chromosome:C_jacchus3.2.1:14:1:108792865:1	1220227	1286045	D	fer-1-like family member 5 [Source:HGNC Symbol;Acc:HGNC:19044]
ENSCJAG00000015576	KNOWN	protein_coding	SPCS2	chromosome:C_jacchus3.2.1:11:1:130397257:1	63723855	63756925	R	Signal peptidase complex subunit 2 {ECO:0000313|EMBL:JAB22265.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046906}  [Source:UniProtKB/TrEMBL;Acc:F7IAN3]
ENSCJAG00000011628	KNOWN	protein_coding	FAM25B	chromosome:C_jacchus3.2.1:12:1:121768101:1	36900544	36904750	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021364}  [Source:UniProtKB/TrEMBL;Acc:F6TSZ0]
ENSCJAG00000016121	KNOWN	protein_coding	PGM5	chromosome:C_jacchus3.2.1:1:1:210400635:1	101347202	101508838	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029668}  [Source:UniProtKB/TrEMBL;Acc:F7IRE1]
ENSCJAG00000007428	KNOWN	protein_coding	NDUFA4L2	chromosome:C_jacchus3.2.1:9:1:124281992:1	46039163	46041391	R	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2 {ECO:0000313|EMBL:JAB18440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013822}  [Source:UniProtKB/TrEMBL;Acc:F7BWH3]
ENSCJAG00000016118	KNOWN_BY_PROJECTION	protein_coding	TMEM252	chromosome:C_jacchus3.2.1:1:1:210400635:1	101336080	101340310	D	transmembrane protein 252 [Source:HGNC Symbol;Acc:HGNC:28537]
ENSCJAG00000012986	NOVEL	protein_coding	ENSCJAG00000012986	chromosome:C_jacchus3.2.1:20:1:44557958:1	43285268	43290066	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023817}  [Source:UniProtKB/TrEMBL;Acc:F7D525]
ENSCJAG00000015573	KNOWN_BY_PROJECTION	protein_coding	NEU3	chromosome:C_jacchus3.2.1:11:1:130397257:1	63687250	63714165	R	sialidase 3 (membrane sialidase) [Source:HGNC Symbol;Acc:HGNC:7760]
ENSCJAG00000034114	NOVEL	protein_coding	ENSCJAG00000034114	chromosome:C_jacchus3.2.1:1:1:210400635:1	101268730	101269194	D	Acyl carrier protein {ECO:0000256|RuleBase:RU000722}  [Source:UniProtKB/TrEMBL;Acc:F7ICE6]
ENSCJAG00000015571	NOVEL	pseudogene	ENSCJAG00000015571	chromosome:C_jacchus3.2.1:11:1:130397257:1	63641396	63641936	D	<no descrition>
ENSCJAG00000015558	KNOWN_BY_PROJECTION	protein_coding	OR2AT4	chromosome:C_jacchus3.2.1:11:1:130397257:1	63612098	63613952	D	olfactory receptor, family 2, subfamily AT, member 4 [Source:HGNC Symbol;Acc:HGNC:19620]
ENSCJAG00000038031	NOVEL	protein_coding	ENSCJAG00000038031	chromosome:C_jacchus3.2.1:1:1:210400635:1	101233395	101234172	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052370}  [Source:UniProtKB/TrEMBL;Acc:F7INP2]
ENSCJAG00000035595	NOVEL	protein_coding	ENSCJAG00000035595	chromosome:C_jacchus3.2.1:1:1:210400635:1	101231763	101236057	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052332}  [Source:UniProtKB/TrEMBL;Acc:F7HKF0]
ENSCJAG00000001954	KNOWN_BY_PROJECTION	protein_coding	C9orf153	chromosome:C_jacchus3.2.1:1:1:210400635:1	101175853	101184938	D	chromosome 9 open reading frame 153 [Source:HGNC Symbol;Acc:HGNC:31456]
ENSCJAG00000033435	NOVEL	protein_coding	ENSCJAG00000033435	chromosome:C_jacchus3.2.1:1:1:210400635:1	101157705	101169071	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046890}  [Source:UniProtKB/TrEMBL;Acc:F7IK06]
ENSCJAG00000016470	KNOWN_BY_PROJECTION	protein_coding	ARFGEF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	42957955	43065677	D	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) [Source:HGNC Symbol;Acc:HGNC:15853]
ENSCJAG00000001940	KNOWN	protein_coding	ISCA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	101123979	101136580	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003514}  [Source:UniProtKB/TrEMBL;Acc:F7F117]
ENSCJAG00000015594	KNOWN_BY_PROJECTION	protein_coding	CENPE	chromosome:C_jacchus3.2.1:3:1:190850796:1	90466741	90549360	D	centromere protein E, 312kDa [Source:HGNC Symbol;Acc:HGNC:1856]
ENSCJAG00000003597	KNOWN	protein_coding	NEDD4L	chromosome:C_jacchus3.2.1:13:1:117903854:1	95949371	96313932	D	E3 ubiquitin-protein ligase NEDD4-like isoform 3 {ECO:0000313|EMBL:JAB14422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006892}  [Source:UniProtKB/TrEMBL;Acc:F7HG24]
ENSCJAG00000012927	KNOWN_BY_PROJECTION	protein_coding	RNF166	chromosome:C_jacchus3.2.1:20:1:44557958:1	43171317	43176343	R	ring finger protein 166 [Source:HGNC Symbol;Acc:HGNC:28856]
ENSCJAG00000012922	KNOWN	protein_coding	SNAI3	chromosome:C_jacchus3.2.1:20:1:44557958:1	43151454	43160372	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023672}; Zinc finger protein SNAI3 {ECO:0000313|EMBL:JAB40866.1}  [Source:UniProtKB/TrEMBL;Acc:F7H2L2]
ENSCJAG00000012897	KNOWN	protein_coding	MVD	chromosome:C_jacchus3.2.1:20:1:44557958:1	43124981	43134934	R	Diphosphomevalonate decarboxylase {ECO:0000313|EMBL:JAB02777.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023667}  [Source:UniProtKB/TrEMBL;Acc:F7H2S1]
ENSCJAG00000015525	KNOWN_BY_PROJECTION	protein_coding	SLCO2B1	chromosome:C_jacchus3.2.1:11:1:130397257:1	63498676	63556096	R	solute carrier organic anion transporter family, member 2B1 [Source:HGNC Symbol;Acc:HGNC:10962]
ENSCJAG00000015430	KNOWN	protein_coding	CSK	chromosome:C_jacchus3.2.1:10:1:132174527:1	17136036	17158288	D	Tyrosine-protein kinase CSK {ECO:0000313|EMBL:JAB10659.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045245}  [Source:UniProtKB/TrEMBL;Acc:F6QS08]
ENSCJAG00000015681	NOVEL	protein_coding	ENSCJAG00000015681	chromosome:C_jacchus3.2.1:3:1:190850796:1	90167409	90169353	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028873}  [Source:UniProtKB/TrEMBL;Acc:F6W5F8]
ENSCJAG00000012888	KNOWN	protein_coding	CYBA	chromosome:C_jacchus3.2.1:20:1:44557958:1	43118362	43123981	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023621}  [Source:UniProtKB/TrEMBL;Acc:F7D5K8]
ENSCJAG00000015691	KNOWN_BY_PROJECTION	protein_coding	TACR3	chromosome:C_jacchus3.2.1:3:1:190850796:1	90038085	90153992	D	tachykinin receptor 3 [Source:HGNC Symbol;Acc:HGNC:11528]
ENSCJAG00000015701	KNOWN_BY_PROJECTION	protein_coding	CXXC4	chromosome:C_jacchus3.2.1:3:1:190850796:1	89200283	89221280	D	CXXC finger protein 4 [Source:HGNC Symbol;Acc:HGNC:24593]
ENSCJAG00000016539	KNOWN_BY_PROJECTION	protein_coding	PREX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	42642451	42773714	R	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:32594]
ENSCJAG00000022087	KNOWN_BY_PROJECTION	protein_coding	TPBGL	chromosome:C_jacchus3.2.1:11:1:130397257:1	63463218	63465028	R	trophoblast glycoprotein-like [Source:HGNC Symbol;Acc:HGNC:44159]
ENSCJAG00000034969	NOVEL	protein_coding	ENSCJAG00000034969	chromosome:C_jacchus3.2.1:10:1:132174527:1	17115000	17117706	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016937}  [Source:UniProtKB/TrEMBL;Acc:F7CHR3]
ENSCJAG00000011633	NOVEL	protein_coding	ENSCJAG00000011633	chromosome:C_jacchus3.2.1:12:1:121768101:1	36790540	36830755	D	Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}  [Source:UniProtKB/TrEMBL;Acc:F6TG08]
ENSCJAG00000012943	KNOWN_BY_PROJECTION	protein_coding	PIEZO1	chromosome:C_jacchus3.2.1:20:1:44557958:1	43106837	43425939	R	piezo-type mechanosensitive ion channel component 1 [Source:HGNC Symbol;Acc:HGNC:28993]
ENSCJAG00000015459	KNOWN_BY_PROJECTION	protein_coding	ARRB1	chromosome:C_jacchus3.2.1:11:1:130397257:1	63417070	63441504	D	arrestin, beta 1 [Source:HGNC Symbol;Acc:HGNC:711]
ENSCJAG00000007688	KNOWN_BY_PROJECTION	protein_coding	KANSL3	chromosome:C_jacchus3.2.1:14:1:108792865:1	1165438	1211702	R	KAT8 regulatory NSL complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25473]
ENSCJAG00000015737	KNOWN_BY_PROJECTION	protein_coding	TET2	chromosome:C_jacchus3.2.1:3:1:190850796:1	88376907	88510152	R	tet methylcytosine dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:25941]
ENSCJAG00000012844	KNOWN	protein_coding	ZC3H18	chromosome:C_jacchus3.2.1:20:1:44557958:1	43041981	43108138	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023598}; Zinc finger CCCH domain-containing protein 18 {ECO:0000313|EMBL:JAB08488.1}  [Source:UniProtKB/TrEMBL;Acc:F7E4H0]
ENSCJAG00000001845	KNOWN_BY_PROJECTION	protein_coding	ZCCHC6	chromosome:C_jacchus3.2.1:1:1:210400635:1	101043360	101119777	D	zinc finger, CCHC domain containing 6 [Source:HGNC Symbol;Acc:HGNC:25817]
ENSCJAG00000012840	KNOWN_BY_PROJECTION	protein_coding	ZFPM1	chromosome:C_jacchus3.2.1:20:1:44557958:1	42960960	43007702	D	zinc finger protein, FOG family member 1 [Source:HGNC Symbol;Acc:HGNC:19762]
ENSCJAG00000007779	NOVEL	pseudogene	ENSCJAG00000007779	chromosome:C_jacchus3.2.1:14:1:108792865:1	1129223	1130109	D	<no descrition>
ENSCJAG00000007759	KNOWN	protein_coding	ARID5A	chromosome:C_jacchus3.2.1:14:1:108792865:1	1128639	1144765	D	AT-rich interactive domain-containing protein 5A {ECO:0000313|EMBL:JAB05295.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014403}  [Source:UniProtKB/TrEMBL;Acc:F7I2A5]
ENSCJAG00000007438	KNOWN_BY_PROJECTION	protein_coding	SHMT2	chromosome:C_jacchus3.2.1:9:1:124281992:1	46033866	46039193	D	serine hydroxymethyltransferase 2 (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:10852]
ENSCJAG00000007758	KNOWN_BY_PROJECTION	protein_coding	NEURL3	chromosome:C_jacchus3.2.1:14:1:108792865:1	1087823	1094944	R	neuralized E3 ubiquitin protein ligase 3 [Source:HGNC Symbol;Acc:HGNC:25162]
ENSCJAG00000003813	KNOWN_BY_PROJECTION	protein_coding	ATP8B1	chromosome:C_jacchus3.2.1:13:1:117903854:1	95567355	95639509	R	ATPase, aminophospholipid transporter, class I, type 8B, member 1 [Source:HGNC Symbol;Acc:HGNC:3706]
ENSCJAG00000015424	KNOWN_BY_PROJECTION	protein_coding	RPS3	chromosome:C_jacchus3.2.1:11:1:130397257:1	63292372	63298293	R	ribosomal protein S3 [Source:HGNC Symbol;Acc:HGNC:10420]
ENSCJAG00000007510	KNOWN_BY_PROJECTION	protein_coding	NXPH4	chromosome:C_jacchus3.2.1:9:1:124281992:1	46027733	46029741	D	neurexophilin 4 [Source:HGNC Symbol;Acc:HGNC:8078]
ENSCJAG00000016568	KNOWN	protein_coding	SULF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	41741977	41872570	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030525}  [Source:UniProtKB/TrEMBL;Acc:F6Y4Q4]
ENSCJAG00000011757	KNOWN_BY_PROJECTION	protein_coding	FAM35A	chromosome:C_jacchus3.2.1:12:1:121768101:1	36683976	36786173	R	family with sequence similarity 35, member A [Source:HGNC Symbol;Acc:HGNC:28773]
ENSCJAG00000015421	KNOWN_BY_PROJECTION	protein_coding	KLHL35	chromosome:C_jacchus3.2.1:11:1:130397257:1	63268182	63277531	D	kelch-like family member 35 [Source:HGNC Symbol;Acc:HGNC:26597]
ENSCJAG00000011788	KNOWN_BY_PROJECTION	protein_coding	GPRIN2	chromosome:C_jacchus3.2.1:12:1:121768101:1	36625185	36626877	R	G protein regulated inducer of neurite outgrowth 2 [Source:HGNC Symbol;Acc:HGNC:23730]
ENSCJAG00000015715	KNOWN_BY_PROJECTION	protein_coding	PPA2	chromosome:C_jacchus3.2.1:3:1:190850796:1	88206289	88308860	D	pyrophosphatase (inorganic) 2 [Source:HGNC Symbol;Acc:HGNC:28883]
ENSCJAG00000003837	KNOWN_BY_PROJECTION	protein_coding	NARS	chromosome:C_jacchus3.2.1:13:1:117903854:1	95524403	95544812	R	asparaginyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:7643]
ENSCJAG00000002074	KNOWN_BY_PROJECTION	protein_coding	CYP21A2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32596803	32600039	D	cytochrome P450, family 21, subfamily A, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2600]
ENSCJAG00000001785	KNOWN_BY_PROJECTION	protein_coding	SPTLC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	100945014	101008064	R	serine palmitoyltransferase, long chain base subunit 1 [Source:HGNC Symbol;Acc:HGNC:11277]
ENSCJAG00000003873	KNOWN_BY_PROJECTION	protein_coding	FECH	chromosome:C_jacchus3.2.1:13:1:117903854:1	95477722	95514988	R	ferrochelatase [Source:HGNC Symbol;Acc:HGNC:3647]
ENSCJAG00000012829	KNOWN_BY_PROJECTION	protein_coding	IL17C	chromosome:C_jacchus3.2.1:20:1:44557958:1	42921007	43115102	D	interleukin 17C [Source:HGNC Symbol;Acc:HGNC:5983]
ENSCJAG00000003917	KNOWN	protein_coding	ST8SIA3	chromosome:C_jacchus3.2.1:13:1:117903854:1	95281941	95290193	D	Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase {ECO:0000313|EMBL:JAB16919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007138}  [Source:UniProtKB/TrEMBL;Acc:F6RYN4]
ENSCJAG00000003908	KNOWN_BY_PROJECTION	protein_coding	ONECUT2	chromosome:C_jacchus3.2.1:13:1:117903854:1	95358021	95400318	D	one cut homeobox 2 [Source:HGNC Symbol;Acc:HGNC:8139]
ENSCJAG00000003935	NOVEL	pseudogene	ENSCJAG00000003935	chromosome:C_jacchus3.2.1:13:1:117903854:1	95089362	95089866	D	<no descrition>
ENSCJAG00000011770	NOVEL	protein_coding	ENSCJAG00000011770	chromosome:C_jacchus3.2.1:12:1:121768101:1	36588562	36666195	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021628}  [Source:UniProtKB/TrEMBL;Acc:F6RWX1]
ENSCJAG00000012825	KNOWN_BY_PROJECTION	protein_coding	ZNF469	chromosome:C_jacchus3.2.1:20:1:44557958:1	42900787	42913442	D	zinc finger protein 469 [Source:HGNC Symbol;Acc:HGNC:23216]
ENSCJAG00000034251	NOVEL	protein_coding	ENSCJAG00000034251	chromosome:C_jacchus3.2.1:20:1:44557958:1	42786967	42787438	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045563}  [Source:UniProtKB/TrEMBL;Acc:F6SI39]
ENSCJAG00000001769	NOVEL	protein_coding	ENSCJAG00000001769	chromosome:C_jacchus3.2.1:1:1:210400635:1	100652489	100885005	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003182}  [Source:UniProtKB/TrEMBL;Acc:F7HFW4]
ENSCJAG00000008630	NOVEL	pseudogene	ENSCJAG00000008630	chromosome:C_jacchus3.2.1:20:1:44557958:1	42550408	42550636	R	<no descrition>
ENSCJAG00000008097	NOVEL	pseudogene	ENSCJAG00000008097	chromosome:C_jacchus3.2.1:12:1:121768101:1	36408171	36408607	D	<no descrition>
ENSCJAG00000031816	KNOWN	protein_coding	RFK	chromosome:C_jacchus3.2.1:1:1:210400635:1	100609378	100618131	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048017}  [Source:UniProtKB/TrEMBL;Acc:F7GFJ9]
ENSCJAG00000015747	KNOWN_BY_PROJECTION	protein_coding	ARHGEF38	chromosome:C_jacchus3.2.1:3:1:190850796:1	88035123	88080807	R	Rho guanine nucleotide exchange factor (GEF) 38 [Source:HGNC Symbol;Acc:HGNC:25968]
ENSCJAG00000001765	NOVEL	pseudogene	ENSCJAG00000001765	chromosome:C_jacchus3.2.1:1:1:210400635:1	100396471	100398146	R	<no descrition>
ENSCJAG00000001764	NOVEL	pseudogene	ENSCJAG00000001764	chromosome:C_jacchus3.2.1:1:1:210400635:1	100163261	100165138	R	<no descrition>
ENSCJAG00000003937	KNOWN_BY_PROJECTION	protein_coding	WDR7	chromosome:C_jacchus3.2.1:13:1:117903854:1	94622965	94982473	D	WD repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:13490]
ENSCJAG00000008636	KNOWN	protein_coding	BANP	chromosome:C_jacchus3.2.1:20:1:44557958:1	42391563	42541977	D	Protein BANP isoform c {ECO:0000313|EMBL:JAB07802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015922}  [Source:UniProtKB/TrEMBL;Acc:F7E7Q1]
ENSCJAG00000001751	KNOWN_BY_PROJECTION	protein_coding	PIP5K1B	chromosome:C_jacchus3.2.1:1:1:210400635:1	100129275	100303377	R	phosphatidylinositol-4-phosphate 5-kinase, type I, beta [Source:HGNC Symbol;Acc:HGNC:8995]
ENSCJAG00000015751	KNOWN	protein_coding	INTS12	chromosome:C_jacchus3.2.1:3:1:190850796:1	88003613	88030561	D	Integrator complex subunit 12 {ECO:0000313|EMBL:JAB45451.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029012}  [Source:UniProtKB/TrEMBL;Acc:F7HYK2]
ENSCJAG00000015790	NOVEL	pseudogene	ENSCJAG00000015790	chromosome:C_jacchus3.2.1:3:1:190850796:1	87935362	87936377	R	<no descrition>
ENSCJAG00000007660	NOVEL	protein_coding	ENSCJAG00000007660	chromosome:C_jacchus3.2.1:14:1:108792865:1	913376	962877	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014227}  [Source:UniProtKB/TrEMBL;Acc:F7HVD3]
ENSCJAG00000008659	KNOWN_BY_PROJECTION	protein_coding	CA5A	chromosome:C_jacchus3.2.1:20:1:44557958:1	42330634	42381963	R	carbonic anhydrase VA, mitochondrial [Source:HGNC Symbol;Acc:HGNC:1377]
ENSCJAG00000015763	KNOWN_BY_PROJECTION	protein_coding	GSTCD	chromosome:C_jacchus3.2.1:3:1:190850796:1	87835709	87995094	R	glutathione S-transferase, C-terminal domain containing [Source:HGNC Symbol;Acc:HGNC:25806]
ENSCJAG00000004012	KNOWN	protein_coding	TXNL1	chromosome:C_jacchus3.2.1:13:1:117903854:1	94551575	94591046	R	Thioredoxin-like protein 1 {ECO:0000313|EMBL:JAB08895.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007322}  [Source:UniProtKB/TrEMBL;Acc:F6S6V9]
ENSCJAG00000004037	NOVEL	protein_coding	ENSCJAG00000004037	chromosome:C_jacchus3.2.1:13:1:117903854:1	94037153	94040766	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007324}  [Source:UniProtKB/TrEMBL;Acc:F6S6V1]
ENSCJAG00000007651	KNOWN_BY_PROJECTION	protein_coding	ITPRIPL1	chromosome:C_jacchus3.2.1:14:1:108792865:1	903694	906732	D	inositol 1,4,5-trisphosphate receptor interacting protein-like 1 [Source:HGNC Symbol;Acc:HGNC:29371]
ENSCJAG00000008679	KNOWN	protein_coding	SLC7A5	chromosome:C_jacchus3.2.1:20:1:44557958:1	42266956	42306479	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015994}  [Source:UniProtKB/TrEMBL;Acc:F7HEI5]
ENSCJAG00000015399	KNOWN_BY_PROJECTION	protein_coding	GDPD5	chromosome:C_jacchus3.2.1:11:1:130397257:1	63169781	63264158	D	glycerophosphodiester phosphodiesterase domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28804]
ENSCJAG00000010289	KNOWN_BY_PROJECTION	protein_coding	LRP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	45927269	46015926	D	low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
ENSCJAG00000016602	KNOWN	protein_coding	NCOA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	41591082	41738299	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030583}  [Source:UniProtKB/TrEMBL;Acc:F6V5H5]
ENSCJAG00000017624	KNOWN_BY_PROJECTION	protein_coding	CLK3	chromosome:C_jacchus3.2.1:10:1:132174527:1	17088799	17103964	R	CDC-like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
ENSCJAG00000004038	KNOWN	protein_coding	TCF4	chromosome:C_jacchus3.2.1:13:1:117903854:1	93208002	93595737	R	Transcription factor 4 isoform j {ECO:0000313|EMBL:JAB09325.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007458}  [Source:UniProtKB/TrEMBL;Acc:F6TQM9]
ENSCJAG00000016694	NOVEL	pseudogene	ENSCJAG00000016694	chromosome:C_jacchus3.2.1:5:1:159171411:1	41384319	41384889	D	<no descrition>
ENSCJAG00000015377	KNOWN	protein_coding	SERPINH1	chromosome:C_jacchus3.2.1:11:1:130397257:1	63119525	63130780	R	Serpin H1 {ECO:0000313|EMBL:JAB10058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025577}  [Source:UniProtKB/TrEMBL;Acc:F6WJ59]
ENSCJAG00000017681	KNOWN	protein_coding	EDC3	chromosome:C_jacchus3.2.1:10:1:132174527:1	17016822	17088451	D	Enhancer of mRNA-decapping protein 3 {ECO:0000313|EMBL:JAB22256.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032609}  [Source:UniProtKB/TrEMBL;Acc:F7ERK1]
ENSCJAG00000015365	KNOWN	protein_coding	MAP6	chromosome:C_jacchus3.2.1:11:1:130397257:1	63023601	63105621	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028307}  [Source:UniProtKB/TrEMBL;Acc:F7C5C7]
ENSCJAG00000015795	KNOWN_BY_PROJECTION	protein_coding	NPNT	chromosome:C_jacchus3.2.1:3:1:190850796:1	87718373	87796691	R	nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
ENSCJAG00000008702	NOVEL	protein_coding	ENSCJAG00000008702	chromosome:C_jacchus3.2.1:20:1:44557958:1	42127162	42187074	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016080}  [Source:UniProtKB/TrEMBL;Acc:F6VRA1]
ENSCJAG00000015357	KNOWN_BY_PROJECTION	protein_coding	MOGAT2	chromosome:C_jacchus3.2.1:11:1:130397257:1	62986214	62998061	R	monoacylglycerol O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:23248]
ENSCJAG00000015337	KNOWN_BY_PROJECTION	protein_coding	DGAT2	chromosome:C_jacchus3.2.1:11:1:130397257:1	62917338	62949191	R	diacylglycerol O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16940]
ENSCJAG00000017698	KNOWN	protein_coding	CYP1A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	16992587	16999934	D	Cytochrome P450 {ECO:0000256|RuleBase:RU000461}  [Source:UniProtKB/TrEMBL;Acc:F7H155]
ENSCJAG00000008794	NOVEL	protein_coding	ENSCJAG00000008794	chromosome:C_jacchus3.2.1:20:1:44557958:1	42122159	42122849	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016139}  [Source:UniProtKB/TrEMBL;Acc:F7BRZ6]
ENSCJAG00000008801	KNOWN_BY_PROJECTION	protein_coding	JPH3	chromosome:C_jacchus3.2.1:20:1:44557958:1	42004461	42118724	D	junctophilin 3 [Source:HGNC Symbol;Acc:HGNC:14203]
ENSCJAG00000004460	KNOWN_BY_PROJECTION	protein_coding	ZCCHC14	chromosome:C_jacchus3.2.1:20:1:44557958:1	41793568	41848594	R	zinc finger, CCHC domain containing 14 [Source:HGNC Symbol;Acc:HGNC:24134]
ENSCJAG00000015319	KNOWN_BY_PROJECTION	protein_coding	UVRAG	chromosome:C_jacchus3.2.1:11:1:130397257:1	62597003	62865723	R	UV radiation resistance associated [Source:HGNC Symbol;Acc:HGNC:12640]
ENSCJAG00000008101	KNOWN	protein_coding	ANXA8L2	chromosome:C_jacchus3.2.1:12:1:121768101:1	36385160	36402102	D	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F6X8Z8]
ENSCJAG00000004473	NOVEL	protein_coding	ENSCJAG00000004473	chromosome:C_jacchus3.2.1:20:1:44557958:1	41775336	41787076	D	<no descrition>
ENSCJAG00000004482	KNOWN	protein_coding	FBXO31	chromosome:C_jacchus3.2.1:20:1:44557958:1	41711918	41761663	R	F-box only protein 31 {ECO:0000313|EMBL:JAB03848.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008141}  [Source:UniProtKB/TrEMBL;Acc:F7HU02]
ENSCJAG00000004497	NOVEL	protein_coding	ENSCJAG00000004497	chromosome:C_jacchus3.2.1:20:1:44557958:1	41679133	41691381	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008152}  [Source:UniProtKB/TrEMBL;Acc:F7HNF4]
ENSCJAG00000017716	KNOWN	protein_coding	CYP1A2	chromosome:C_jacchus3.2.1:10:1:132174527:1	16965843	16973882	R	Callithrix jacchus cytochrome P450, family 1, subfamily A, polypeptide 2 (CYP1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001204434]
ENSCJAG00000017133	KNOWN_BY_PROJECTION	protein_coding	FOXL1	chromosome:C_jacchus3.2.1:20:1:44557958:1	40970938	40974463	D	forkhead box L1 [Source:HGNC Symbol;Acc:HGNC:3817]
ENSCJAG00000019765	NOVEL	protein_coding	ENSCJAG00000019765	chromosome:C_jacchus3.2.1:20:1:44557958:1	41529427	41531017	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052400}  [Source:UniProtKB/TrEMBL;Acc:F7IE63]
ENSCJAG00000017143	NOVEL	pseudogene	ENSCJAG00000017143	chromosome:C_jacchus3.2.1:20:1:44557958:1	40959652	40961157	D	<no descrition>
ENSCJAG00000017146	KNOWN_BY_PROJECTION	protein_coding	MTHFSD	chromosome:C_jacchus3.2.1:20:1:44557958:1	40920748	40943237	R	methenyltetrahydrofolate synthetase domain containing [Source:HGNC Symbol;Acc:HGNC:25778]
ENSCJAG00000017152	KNOWN_BY_PROJECTION	protein_coding	FOXF1	chromosome:C_jacchus3.2.1:20:1:44557958:1	40903431	40907201	D	forkhead box F1 [Source:HGNC Symbol;Acc:HGNC:3809]
ENSCJAG00000009875	NOVEL	protein_coding	ENSCJAG00000009875	chromosome:C_jacchus3.2.1:20:1:44557958:1	40708709	40710009	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018109}  [Source:UniProtKB/TrEMBL;Acc:F7ESQ9]
ENSCJAG00000017342	NOVEL	pseudogene	ENSCJAG00000017342	chromosome:C_jacchus3.2.1:20:1:44557958:1	40427014	40427806	D	<no descrition>
ENSCJAG00000014361	KNOWN_BY_PROJECTION	protein_coding	ANTXRL	chromosome:C_jacchus3.2.1:12:1:121768101:1	36295947	36332252	R	anthrax toxin receptor-like [Source:HGNC Symbol;Acc:HGNC:27277]
ENSCJAG00000013665	NOVEL	pseudogene	ENSCJAG00000013665	chromosome:C_jacchus3.2.1:12:1:121768101:1	36189256	36192677	R	<no descrition>
ENSCJAG00000001713	KNOWN	protein_coding	TJP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	99971837	100081756	D	Tight junction protein ZO-2 isoform 1 {ECO:0000313|EMBL:JAB22382.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003129}  [Source:UniProtKB/TrEMBL;Acc:F7DWD7]
ENSCJAG00000017331	KNOWN_BY_PROJECTION	protein_coding	IRF8	chromosome:C_jacchus3.2.1:20:1:44557958:1	40303298	40326830	D	interferon regulatory factor 8 [Source:HGNC Symbol;Acc:HGNC:5358]
ENSCJAG00000004164	KNOWN_BY_PROJECTION	protein_coding	CCDC68	chromosome:C_jacchus3.2.1:13:1:117903854:1	92901441	92954789	R	coiled-coil domain containing 68 [Source:HGNC Symbol;Acc:HGNC:24350]
ENSCJAG00000015822	KNOWN	protein_coding	TBCK	chromosome:C_jacchus3.2.1:3:1:190850796:1	87311652	87604280	D	TBC domain-containing protein kinase-like protein isoform a {ECO:0000313|EMBL:JAB02240.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029238}  [Source:UniProtKB/TrEMBL;Acc:F7HSE3]
ENSCJAG00000017319	KNOWN_BY_PROJECTION	protein_coding	COX4I1	chromosome:C_jacchus3.2.1:20:1:44557958:1	40200497	40207684	D	cytochrome c oxidase subunit IV isoform 1 [Source:HGNC Symbol;Acc:HGNC:2265]
ENSCJAG00000004179	KNOWN_BY_PROJECTION	protein_coding	DYNAP	chromosome:C_jacchus3.2.1:13:1:117903854:1	92582317	92603123	D	dynactin associated protein [Source:HGNC Symbol;Acc:HGNC:26808]
ENSCJAG00000004175	KNOWN	protein_coding	RAB27B	chromosome:C_jacchus3.2.1:13:1:117903854:1	92819236	92885296	D	Ras-related protein Rab-27B {ECO:0000313|EMBL:JAB07448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007580}  [Source:UniProtKB/TrEMBL;Acc:F6QWV5]
ENSCJAG00000017312	KNOWN	protein_coding	EMC8	chromosome:C_jacchus3.2.1:20:1:44557958:1	40180009	40200449	R	ER membrane protein complex subunit 8 isoform 1 {ECO:0000313|EMBL:JAB02914.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031866}  [Source:UniProtKB/TrEMBL;Acc:F7IA18]
ENSCJAG00000001841	KNOWN_BY_PROJECTION	protein_coding	C18orf54	chromosome:C_jacchus3.2.1:13:1:117903854:1	92358484	92385338	D	chromosome 18 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:13796]
ENSCJAG00000017308	KNOWN	protein_coding	C16ORF74	chromosome:C_jacchus3.2.1:20:1:44557958:1	40097195	40128493	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031849}; Uncharacterized protein C16orf74 {ECO:0000313|EMBL:JAB05214.1}  [Source:UniProtKB/TrEMBL;Acc:F7IEP4]
ENSCJAG00000013661	NOVEL	protein_coding	IRBP	chromosome:C_jacchus3.2.1:12:1:121768101:1	36171915	36207245	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025136}  [Source:UniProtKB/TrEMBL;Acc:F6UCG2]
ENSCJAG00000034626	NOVEL	protein_coding	ENSCJAG00000034626	chromosome:C_jacchus3.2.1:13:1:117903854:1	92335019	92354369	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048360}  [Source:UniProtKB/TrEMBL;Acc:F7GE59]
ENSCJAG00000017303	KNOWN	protein_coding	GINS2	chromosome:C_jacchus3.2.1:20:1:44557958:1	40071562	40083846	R	DNA replication complex GINS protein PSF2 {ECO:0000256|PIRNR:PIRNR028998}  [Source:UniProtKB/TrEMBL;Acc:F7IEQ4]
ENSCJAG00000013659	KNOWN_BY_PROJECTION	protein_coding	GDF2	chromosome:C_jacchus3.2.1:12:1:121768101:1	36146115	36150040	D	growth differentiation factor 2 [Source:HGNC Symbol;Acc:HGNC:4217]
ENSCJAG00000017301	KNOWN_BY_PROJECTION	protein_coding	GSE1	chromosome:C_jacchus3.2.1:20:1:44557958:1	40031989	40107518	D	Gse1 coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:28979]
ENSCJAG00000013653	KNOWN_BY_PROJECTION	protein_coding	GDF10	chromosome:C_jacchus3.2.1:12:1:121768101:1	36122749	36136852	D	growth differentiation factor 10 [Source:HGNC Symbol;Acc:HGNC:4215]
ENSCJAG00000001851	KNOWN	protein_coding	POLI	chromosome:C_jacchus3.2.1:13:1:117903854:1	92287635	92312144	D	DNA polymerase iota {ECO:0000313|EMBL:JAB39854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003324}  [Source:UniProtKB/TrEMBL;Acc:F7EMS2]
ENSCJAG00000004146	KNOWN_BY_PROJECTION	protein_coding	FAM92B	chromosome:C_jacchus3.2.1:20:1:44557958:1	39448156	39461589	R	family with sequence similarity 92, member B [Source:HGNC Symbol;Acc:HGNC:24781]
ENSCJAG00000001750	NOVEL	protein_coding	ENSCJAG00000001750	chromosome:C_jacchus3.2.1:1:1:210400635:1	99939435	100125952	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049480}  [Source:UniProtKB/TrEMBL;Acc:F7AFW4]
ENSCJAG00000015885	KNOWN_BY_PROJECTION	protein_coding	AIMP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	87273360	87311851	R	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:HGNC:10648]
ENSCJAG00000001862	KNOWN_BY_PROJECTION	protein_coding	MBD2	chromosome:C_jacchus3.2.1:13:1:117903854:1	92175395	92242706	R	methyl-CpG binding domain protein 2 [Source:HGNC Symbol;Acc:HGNC:6917]
ENSCJAG00000034596	NOVEL	pseudogene	ENSCJAG00000034596	chromosome:C_jacchus3.2.1:13:1:117903854:1	91536502	91536659	D	<no descrition>
ENSCJAG00000015900	NOVEL	protein_coding	ENSCJAG00000015900	chromosome:C_jacchus3.2.1:3:1:190850796:1	87253749	87262972	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029262}  [Source:UniProtKB/TrEMBL;Acc:F7IRN2]
ENSCJAG00000004127	KNOWN_BY_PROJECTION	protein_coding	KIAA0513	chromosome:C_jacchus3.2.1:20:1:44557958:1	39379130	39438700	D	KIAA0513 [Source:HGNC Symbol;Acc:HGNC:29058]
ENSCJAG00000015903	KNOWN_BY_PROJECTION	protein_coding	DKK2	chromosome:C_jacchus3.2.1:3:1:190850796:1	86622203	86726602	D	dickkopf WNT signaling pathway inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:2892]
ENSCJAG00000015296	KNOWN	protein_coding	WNT11	chromosome:C_jacchus3.2.1:11:1:130397257:1	62531797	62552719	D	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F6Z6V5]
ENSCJAG00000004119	KNOWN	protein_coding	ZDHHC7	chromosome:C_jacchus3.2.1:20:1:44557958:1	39329216	39343708	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F6STE6]
ENSCJAG00000001868	KNOWN_BY_PROJECTION	protein_coding	DCC	chromosome:C_jacchus3.2.1:13:1:117903854:1	90744470	91537125	D	DCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]
ENSCJAG00000015286	NOVEL	protein_coding	ENSCJAG00000015286	chromosome:C_jacchus3.2.1:11:1:130397257:1	62348710	62361205	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028149}  [Source:UniProtKB/TrEMBL;Acc:F7A7Z2]
ENSCJAG00000007514	KNOWN	protein_coding	SNRNP200	chromosome:C_jacchus3.2.1:14:1:108792865:1	738651	771086	R	U5 small nuclear ribonucleoprotein 200 kDa helicase {ECO:0000313|EMBL:JAB17821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014168}  [Source:UniProtKB/TrEMBL;Acc:F7IBV6]
ENSCJAG00000001695	KNOWN	protein_coding	FXN	chromosome:C_jacchus3.2.1:1:1:210400635:1	99842115	99910811	D	Frataxin, mitochondrial isoform 1 preproprotein {ECO:0000313|EMBL:JAB07252.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003055}  [Source:UniProtKB/TrEMBL;Acc:F7G7D3]
ENSCJAG00000001902	KNOWN_BY_PROJECTION	protein_coding	MEX3C	chromosome:C_jacchus3.2.1:13:1:117903854:1	89115105	89136414	R	mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040]
ENSCJAG00000004090	KNOWN_BY_PROJECTION	protein_coding	CRISPLD2	chromosome:C_jacchus3.2.1:20:1:44557958:1	39187327	39254189	D	cysteine-rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]
ENSCJAG00000015905	KNOWN	protein_coding	PAPSS1	chromosome:C_jacchus3.2.1:3:1:190850796:1	85876479	85989346	D	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 {ECO:0000313|EMBL:JAB09933.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029313}  [Source:UniProtKB/TrEMBL;Acc:F7IEX4]
ENSCJAG00000001910	KNOWN	protein_coding	SMAD4	chromosome:C_jacchus3.2.1:13:1:117903854:1	89010689	89046429	D	Mothers against decapentaplegic homolog 4 {ECO:0000313|EMBL:JAB06449.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003458}  [Source:UniProtKB/TrEMBL;Acc:F7GUQ9]
ENSCJAG00000001686	KNOWN_BY_PROJECTION	protein_coding	FAM189A2	chromosome:C_jacchus3.2.1:1:1:210400635:1	99744626	99817232	R	family with sequence similarity 189, member A2 [Source:HGNC Symbol;Acc:HGNC:24820]
ENSCJAG00000001925	KNOWN	protein_coding	ELAC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	88936313	88952875	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003469}; Zinc phosphodiesterase ELAC protein 1 {ECO:0000313|EMBL:JAB09101.1}  [Source:UniProtKB/TrEMBL;Acc:F7GUJ9]
ENSCJAG00000015928	KNOWN	protein_coding	SGMS2	chromosome:C_jacchus3.2.1:3:1:190850796:1	85671971	85759078	R	Phosphatidylcholine:ceramide cholinephosphotransferase 2 {ECO:0000313|EMBL:JAB08065.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047097}  [Source:UniProtKB/TrEMBL;Acc:F7I6J8]
ENSCJAG00000004067	KNOWN	protein_coding	USP10	chromosome:C_jacchus3.2.1:20:1:44557958:1	39036367	39125306	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F6PHK0]
ENSCJAG00000001929	KNOWN	protein_coding	ME2	chromosome:C_jacchus3.2.1:13:1:117903854:1	88856025	88920167	D	Malic enzyme {ECO:0000256|RuleBase:RU003426}  [Source:UniProtKB/TrEMBL;Acc:F7F107]
ENSCJAG00000001668	KNOWN	protein_coding	APBA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	99481468	99722439	D	Amyloid beta A4 protein-binding family A member 1 {ECO:0000313|EMBL:JAB09432.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003001}  [Source:UniProtKB/TrEMBL;Acc:F7GQ85]
ENSCJAG00000015938	KNOWN	protein_coding	HADH	chromosome:C_jacchus3.2.1:3:1:190850796:1	85582186	85629136	R	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial isoform 2 {ECO:0000313|EMBL:JAB05497.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029352}  [Source:UniProtKB/TrEMBL;Acc:F7I7U6]
ENSCJAG00000001663	KNOWN	protein_coding	PTAR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	99375433	99417564	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002967}  [Source:UniProtKB/TrEMBL;Acc:F7HUT4]
ENSCJAG00000001959	KNOWN	protein_coding	MRO	chromosome:C_jacchus3.2.1:13:1:117903854:1	88759985	88793577	R	Protein maestro isoform a {ECO:0000313|EMBL:JAB15326.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003553}  [Source:UniProtKB/TrEMBL;Acc:F7ELY5]
ENSCJAG00000001660	KNOWN_BY_PROJECTION	protein_coding	C9orf135	chromosome:C_jacchus3.2.1:1:1:210400635:1	99239447	99268700	R	chromosome 9 open reading frame 135 [Source:HGNC Symbol;Acc:HGNC:31422]
ENSCJAG00000017758	KNOWN_BY_PROJECTION	protein_coding	ARID3B	chromosome:C_jacchus3.2.1:10:1:132174527:1	16837622	16899415	D	AT rich interactive domain 3B (BRIGHT-like) [Source:HGNC Symbol;Acc:HGNC:14350]
ENSCJAG00000004060	KNOWN	protein_coding	KLHL36	chromosome:C_jacchus3.2.1:20:1:44557958:1	38978221	38993205	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007376}  [Source:UniProtKB/TrEMBL;Acc:F6QYU6]
ENSCJAG00000007497	KNOWN	protein_coding	CIAO1	chromosome:C_jacchus3.2.1:14:1:108792865:1	731329	736576	D	Probable cytosolic iron-sulfur protein assembly protein CIAO1 {ECO:0000256|HAMAP-Rule:MF_03037}  [Source:UniProtKB/TrEMBL;Acc:F6WFZ4]
ENSCJAG00000001974	KNOWN	protein_coding	MAPK4	chromosome:C_jacchus3.2.1:13:1:117903854:1	88509450	88688931	D	Mitogen-activated protein kinase 4 {ECO:0000313|EMBL:JAB08361.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047130}  [Source:UniProtKB/TrEMBL;Acc:F7HUR1]
ENSCJAG00000004056	KNOWN	protein_coding	COTL1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38896594	38944917	R	Coactosin-like protein {ECO:0000313|EMBL:JAB09747.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007362}  [Source:UniProtKB/TrEMBL;Acc:F6R915]
ENSCJAG00000007489	KNOWN	protein_coding	TMEM127	chromosome:C_jacchus3.2.1:14:1:108792865:1	716733	731030	R	Transmembrane protein 127 {ECO:0000313|EMBL:JAB04285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013933}  [Source:UniProtKB/TrEMBL;Acc:F6X2V6]
ENSCJAG00000032333	NOVEL	protein_coding	ENSCJAG00000032333	chromosome:C_jacchus3.2.1:13:1:117903854:1	88422793	88423246	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050704}  [Source:UniProtKB/TrEMBL;Acc:F7EWT1]
ENSCJAG00000008555	KNOWN_BY_PROJECTION	protein_coding	SKA1	chromosome:C_jacchus3.2.1:13:1:117903854:1	88338830	88354928	D	spindle and kinetochore associated complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28109]
ENSCJAG00000004046	KNOWN	protein_coding	TLDC1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38794233	38823013	R	TLD domain-containing protein KIAA1609 {ECO:0000313|EMBL:JAB03779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007354}  [Source:UniProtKB/TrEMBL;Acc:F6RJX9]
ENSCJAG00000015204	KNOWN	protein_coding	C11ORF30	chromosome:C_jacchus3.2.1:11:1:130397257:1	62186113	62302517	R	Protein EMSY {ECO:0000313|EMBL:JAB01920.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028141}  [Source:UniProtKB/TrEMBL;Acc:F7APR2]
ENSCJAG00000017784	KNOWN	protein_coding	ENSCJAG00000017784	chromosome:C_jacchus3.2.1:10:1:132174527:1	16740235	16754498	R	Ubiquitin-like protein 7 {ECO:0000313|EMBL:JAB02138.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042456}  [Source:UniProtKB/TrEMBL;Acc:F6ZQ57]
ENSCJAG00000013632	NOVEL	protein_coding	ENSCJAG00000013632	chromosome:C_jacchus3.2.1:12:1:121768101:1	35696092	35811392	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043543}  [Source:UniProtKB/TrEMBL;Acc:F7HLJ4]
ENSCJAG00000005044	KNOWN	protein_coding	ENSCJAG00000005044	chromosome:C_jacchus3.2.1:13:1:117903854:1	88240334	88246262	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009212}  [Source:UniProtKB/TrEMBL;Acc:F7IB35]
ENSCJAG00000018742	KNOWN	protein_coding	STARD7	chromosome:C_jacchus3.2.1:14:1:108792865:1	651826	684894	R	StAR-related lipid transfer protein 7, mitochondrial {ECO:0000313|EMBL:JAB02453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047618}  [Source:UniProtKB/TrEMBL;Acc:F7H7S6]
ENSCJAG00000018749	KNOWN	protein_coding	DUSP2	chromosome:C_jacchus3.2.1:14:1:108792865:1	603571	605865	R	Dual specificity protein phosphatase {ECO:0000256|PIRNR:PIRNR000939}  [Source:UniProtKB/TrEMBL;Acc:F7HMV7]
ENSCJAG00000018770	KNOWN_BY_PROJECTION	protein_coding	ADRA2B	chromosome:C_jacchus3.2.1:14:1:108792865:1	572287	576147	R	adrenoceptor alpha 2B [Source:HGNC Symbol;Acc:HGNC:282]
ENSCJAG00000018757	KNOWN_BY_PROJECTION	protein_coding	ASTL	chromosome:C_jacchus3.2.1:14:1:108792865:1	583805	599166	R	astacin-like metallo-endopeptidase (M12 family) [Source:HGNC Symbol;Acc:HGNC:31704]
ENSCJAG00000015986	NOVEL	pseudogene	ENSCJAG00000015986	chromosome:C_jacchus3.2.1:3:1:190850796:1	85514998	85516738	R	<no descrition>
ENSCJAG00000015199	KNOWN_BY_PROJECTION	protein_coding	LRRC32	chromosome:C_jacchus3.2.1:11:1:130397257:1	62058128	62070320	D	leucine rich repeat containing 32 [Source:HGNC Symbol;Acc:HGNC:4161]
ENSCJAG00000004959	KNOWN	protein_coding	MBD1	chromosome:C_jacchus3.2.1:13:1:117903854:1	88225270	88239781	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009182}  [Source:UniProtKB/TrEMBL;Acc:F7IKE0]
ENSCJAG00000015198	KNOWN	protein_coding	TSKU	chromosome:C_jacchus3.2.1:11:1:130397257:1	61928209	61943513	R	Tsukushin {ECO:0000313|EMBL:JAB07677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048589}  [Source:UniProtKB/TrEMBL;Acc:F7EVQ6]
ENSCJAG00000015179	KNOWN	protein_coding	ACER3	chromosome:C_jacchus3.2.1:11:1:130397257:1	61647754	61863787	R	Alkaline ceramidase 3 {ECO:0000313|EMBL:JAB09255.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028012}  [Source:UniProtKB/TrEMBL;Acc:F6XIB0]
ENSCJAG00000015175	KNOWN_BY_PROJECTION	protein_coding	B3GNT6	chromosome:C_jacchus3.2.1:11:1:130397257:1	61627265	61634350	R	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase) [Source:HGNC Symbol;Acc:HGNC:24141]
ENSCJAG00000017807	KNOWN	protein_coding	SEMA7A	chromosome:C_jacchus3.2.1:10:1:132174527:1	16702276	16727477	R	Callithrix jacchus semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) (SEMA7A), mRNA. [Source:RefSeq mRNA;Acc:NM_001287480]
ENSCJAG00000004928	KNOWN	protein_coding	CCDC11	chromosome:C_jacchus3.2.1:13:1:117903854:1	88167404	88224043	R	Coiled-coil domain-containing protein 11 {ECO:0000313|EMBL:JAB14702.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009046}  [Source:UniProtKB/TrEMBL;Acc:F7I6H9]
ENSCJAG00000001644	KNOWN_BY_PROJECTION	protein_coding	MAMDC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	98882115	99076193	R	MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673]
ENSCJAG00000015170	NOVEL	pseudogene	ENSCJAG00000015170	chromosome:C_jacchus3.2.1:11:1:130397257:1	61530119	61530609	R	<no descrition>
ENSCJAG00000015126	KNOWN	protein_coding	CAPN5	chromosome:C_jacchus3.2.1:11:1:130397257:1	61506189	61600397	R	Calpain-5 {ECO:0000313|EMBL:JAB05765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027957}  [Source:UniProtKB/TrEMBL;Acc:F7HJT8]
ENSCJAG00000016698	KNOWN	protein_coding	ZMYND8	chromosome:C_jacchus3.2.1:5:1:159171411:1	41278459	41420835	R	Protein kinase C-binding protein 1 isoform a {ECO:0000313|EMBL:JAB18685.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030900}  [Source:UniProtKB/TrEMBL;Acc:F6YLN7]
ENSCJAG00000010327	KNOWN	protein_coding	STAT6	chromosome:C_jacchus3.2.1:9:1:124281992:1	45882960	45900087	R	Signal transducer and activator of transcription {ECO:0000256|RuleBase:RU046415}  [Source:UniProtKB/TrEMBL;Acc:F6QRR4]
ENSCJAG00000004857	KNOWN_BY_PROJECTION	protein_coding	MYO5B	chromosome:C_jacchus3.2.1:13:1:117903854:1	87738792	88136707	R	myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
ENSCJAG00000018773	KNOWN_BY_PROJECTION	protein_coding	GPAT2	chromosome:C_jacchus3.2.1:14:1:108792865:1	485674	498865	R	glycerol-3-phosphate acyltransferase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:27168]
ENSCJAG00000001577	KNOWN_BY_PROJECTION	protein_coding	SMC5	chromosome:C_jacchus3.2.1:1:1:210400635:1	98766579	98856098	R	structural maintenance of chromosomes 5 [Source:HGNC Symbol;Acc:HGNC:20465]
ENSCJAG00000004820	KNOWN	protein_coding	ACAA2	chromosome:C_jacchus3.2.1:13:1:117903854:1	87699459	87730114	R	3-ketoacyl-CoA thiolase, mitochondrial {ECO:0000313|EMBL:JAB09189.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008854}  [Source:UniProtKB/TrEMBL;Acc:F7IHH1]
ENSCJAG00000004818	NOVEL	pseudogene	ENSCJAG00000004818	chromosome:C_jacchus3.2.1:13:1:117903854:1	87485557	87486295	R	<no descrition>
ENSCJAG00000001575	KNOWN	protein_coding	KLF9	chromosome:C_jacchus3.2.1:1:1:210400635:1	98689584	98717554	D	Krueppel-like factor 9 {ECO:0000313|EMBL:JAB03201.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002809}  [Source:UniProtKB/TrEMBL;Acc:F7IBI6]
ENSCJAG00000018863	NOVEL	protein_coding	ENSCJAG00000018863	chromosome:C_jacchus3.2.1:14:1:108792865:1	474808	485554	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035060}  [Source:UniProtKB/TrEMBL;Acc:F7IB95]
ENSCJAG00000004803	KNOWN	protein_coding	LIPG	chromosome:C_jacchus3.2.1:13:1:117903854:1	87450457	87476556	D	Endothelial lipase {ECO:0000313|EMBL:JAB07144.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008780}  [Source:UniProtKB/TrEMBL;Acc:F7IS07]
ENSCJAG00000004779	NOVEL	protein_coding	ENSCJAG00000004779	chromosome:C_jacchus3.2.1:13:1:117903854:1	87406589	87410611	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040640}  [Source:UniProtKB/TrEMBL;Acc:F7I9G2]
ENSCJAG00000004774	KNOWN	protein_coding	ENSCJAG00000004774	chromosome:C_jacchus3.2.1:13:1:117903854:1	87399089	87405374	R	UPF0729 protein C18orf32 {ECO:0000313|EMBL:JAB02324.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040907}  [Source:UniProtKB/TrEMBL;Acc:F7I248]
ENSCJAG00000018883	KNOWN_BY_PROJECTION	protein_coding	KCNIP3	chromosome:C_jacchus3.2.1:14:1:108792865:1	369163	455025	D	Kv channel interacting protein 3, calsenilin [Source:HGNC Symbol;Acc:HGNC:15523]
ENSCJAG00000004754	KNOWN_BY_PROJECTION	protein_coding	DYM	chromosome:C_jacchus3.2.1:13:1:117903854:1	86901145	87381769	R	dymeclin [Source:HGNC Symbol;Acc:HGNC:21317]
ENSCJAG00000019328	NOVEL	protein_coding	ENSCJAG00000019328	chromosome:C_jacchus3.2.1:13:1:117903854:1	87144086	87146137	R	Ribosomal protein L15 {ECO:0000256|RuleBase:RU000663}  [Source:UniProtKB/TrEMBL;Acc:F7AEF5]
ENSCJAG00000015009	KNOWN_BY_PROJECTION	protein_coding	MYO7A	chromosome:C_jacchus3.2.1:11:1:130397257:1	61407235	61502336	R	myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
ENSCJAG00000004749	KNOWN_BY_PROJECTION	protein_coding	SMAD7	chromosome:C_jacchus3.2.1:13:1:117903854:1	86814142	86844562	R	SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]
ENSCJAG00000018910	KNOWN_BY_PROJECTION	protein_coding	PROM2	chromosome:C_jacchus3.2.1:14:1:108792865:1	332162	349400	D	prominin 2 [Source:HGNC Symbol;Acc:HGNC:20685]
ENSCJAG00000004729	KNOWN	protein_coding	CTIF	chromosome:C_jacchus3.2.1:13:1:117903854:1	86377147	86711171	D	CBP80/20-dependent translation initiation factor isoform 2 {ECO:0000313|EMBL:JAB10687.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008615}  [Source:UniProtKB/TrEMBL;Acc:F7IHP3]
ENSCJAG00000018930	KNOWN_BY_PROJECTION	protein_coding	ZNF2	chromosome:C_jacchus3.2.1:14:1:108792865:1	242293	249810	D	zinc finger protein 2 [Source:HGNC Symbol;Acc:HGNC:12991]
ENSCJAG00000010414	KNOWN_BY_PROJECTION	protein_coding	NAB2	chromosome:C_jacchus3.2.1:9:1:124281992:1	45876250	45883023	D	NGFI-A binding protein 2 (EGR1 binding protein 2) [Source:HGNC Symbol;Acc:HGNC:7627]
ENSCJAG00000004724	NOVEL	protein_coding	ENSCJAG00000004724	chromosome:C_jacchus3.2.1:13:1:117903854:1	86088621	86089098	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047715}  [Source:UniProtKB/TrEMBL;Acc:F7F8H3]
ENSCJAG00000018935	KNOWN_BY_PROJECTION	protein_coding	ZNF514	chromosome:C_jacchus3.2.1:14:1:108792865:1	211936	223210	R	zinc finger protein 514 [Source:HGNC Symbol;Acc:HGNC:25894]
ENSCJAG00000004714	NOVEL	protein_coding	ENSCJAG00000004714	chromosome:C_jacchus3.2.1:13:1:117903854:1	85963187	85964897	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008570}  [Source:UniProtKB/TrEMBL;Acc:F7IS47]
ENSCJAG00000015002	KNOWN_BY_PROJECTION	protein_coding	GDPD4	chromosome:C_jacchus3.2.1:11:1:130397257:1	61335371	61405475	D	glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
ENSCJAG00000004704	KNOWN	protein_coding	ZBTB7C	chromosome:C_jacchus3.2.1:13:1:117903854:1	85856221	86245973	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048487}; Zinc finger and BTB domain-containing protein 7C {ECO:0000313|EMBL:JAB06673.1}  [Source:UniProtKB/TrEMBL;Acc:F7H8C9]
ENSCJAG00000015001	NOVEL	protein_coding	ENSCJAG00000015001	chromosome:C_jacchus3.2.1:11:1:130397257:1	61207096	61207657	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027621}  [Source:UniProtKB/TrEMBL;Acc:F7GZG3]
ENSCJAG00000014950	NOVEL	protein_coding	ENSCJAG00000014950	chromosome:C_jacchus3.2.1:11:1:130397257:1	61118135	61118622	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027531}  [Source:UniProtKB/TrEMBL;Acc:F7E8P8]
ENSCJAG00000018942	KNOWN_BY_PROJECTION	protein_coding	MRPS5	chromosome:C_jacchus3.2.1:14:1:108792865:1	150253	177837	R	mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:14498]
ENSCJAG00000015947	KNOWN	protein_coding	LEF1	chromosome:C_jacchus3.2.1:3:1:190850796:1	85451187	85572700	D	Lymphoid enhancer-binding factor 1 isoform 2 {ECO:0000313|EMBL:JAB14411.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043492}  [Source:UniProtKB/TrEMBL;Acc:F7I374]
ENSCJAG00000004630	KNOWN	protein_coding	SMAD2	chromosome:C_jacchus3.2.1:13:1:117903854:1	85654750	85751873	R	Mothers against decapentaplegic homolog 2 isoform 1 {ECO:0000313|EMBL:JAB08468.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008523}  [Source:UniProtKB/TrEMBL;Acc:F7HWK8]
ENSCJAG00000018948	KNOWN	protein_coding	MAL	chromosome:C_jacchus3.2.1:14:1:108792865:1	90299	116344	D	Myelin and lymphocyte protein isoform a {ECO:0000313|EMBL:JAB14339.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035195}  [Source:UniProtKB/TrEMBL;Acc:F7HP25]
ENSCJAG00000032528	NOVEL	protein_coding	ENSCJAG00000032528	scaffold:C_jacchus3.2.1:ACFV01186980.1:1:7313:1	2559	4412	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029186}  [Source:UniProtKB/TrEMBL;Acc:H9KX62]
ENSCJAG00000034143	NOVEL	protein_coding	ENSCJAG00000034143	scaffold:C_jacchus3.2.1:ACFV01184576.1:1:8857:1	4331	7807	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043266}  [Source:UniProtKB/TrEMBL;Acc:H9KY10]
ENSCJAG00000004618	KNOWN_BY_PROJECTION	protein_coding	SKOR2	chromosome:C_jacchus3.2.1:13:1:117903854:1	85011319	85029906	R	SKI family transcriptional corepressor 2 [Source:HGNC Symbol;Acc:HGNC:32695]
ENSCJAG00000015799	NOVEL	pseudogene	ENSCJAG00000015799	scaffold:C_jacchus3.2.1:ACFV01200026.1:1:2243:1	1115	1388	R	<no descrition>
ENSCJAG00000034288	NOVEL	protein_coding	ENSCJAG00000034288	scaffold:C_jacchus3.2.1:GL285784.1:1:15282:1	2166	2915	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004085}  [Source:UniProtKB/TrEMBL;Acc:H9KVR9]
ENSCJAG00000014954	KNOWN_BY_PROJECTION	protein_coding	PAK1	chromosome:C_jacchus3.2.1:11:1:130397257:1	61117896	61291703	D	p21 protein (Cdc42/Rac)-activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]
ENSCJAG00000007281	NOVEL	protein_coding	ENSCJAG00000007281	scaffold:C_jacchus3.2.1:GL285877.1:1:5017:1	3219	4897	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013562}  [Source:UniProtKB/TrEMBL;Acc:H9KWD4]
ENSCJAG00000033169	NOVEL	protein_coding	ENSCJAG00000033169	chromosome:C_jacchus3.2.1:13:1:117903854:1	84916612	84918303	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044268}  [Source:UniProtKB/TrEMBL;Acc:F7D2Y3]
ENSCJAG00000004606	NOVEL	protein_coding	ENSCJAG00000004606	chromosome:C_jacchus3.2.1:13:1:117903854:1	84902847	84905315	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008345}  [Source:UniProtKB/TrEMBL;Acc:F7HTW7]
ENSCJAG00000015987	NOVEL	protein_coding	ENSCJAG00000015987	chromosome:C_jacchus3.2.1:3:1:190850796:1	85443441	85452608	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050013}  [Source:UniProtKB/TrEMBL;Acc:F7FS63]
ENSCJAG00000035452	NOVEL	pseudogene	ENSCJAG00000035452	scaffold:C_jacchus3.2.1:GL290601.1:1:4611:1	3694	4030	R	<no descrition>
ENSCJAG00000015157	KNOWN	protein_coding	POLR2A	chromosome:C_jacchus3.2.1:5:1:159171411:1	74344803	74376461	R	DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}  [Source:UniProtKB/TrEMBL;Acc:F7IJW5]
ENSCJAG00000005836	NOVEL	protein_coding	ENSCJAG00000005836	scaffold:C_jacchus3.2.1:GL285963.1:1:20503:1	2157	4179	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010708}  [Source:UniProtKB/TrEMBL;Acc:H9KWA7]
ENSCJAG00000004610	KNOWN	protein_coding	IER3IP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	84902759	84920633	R	Immediate early response 3-interacting protein 1 {ECO:0000313|EMBL:JAB05127.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008356}  [Source:UniProtKB/TrEMBL;Acc:F7HTN1]
ENSCJAG00000015990	NOVEL	protein_coding	ENSCJAG00000015990	chromosome:C_jacchus3.2.1:3:1:190850796:1	85091159	85104459	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029432}  [Source:UniProtKB/TrEMBL;Acc:F7HS67]
ENSCJAG00000010180	NOVEL	protein_coding	ENSCJAG00000010180	scaffold:C_jacchus3.2.1:GL285105.1:1:13332:1	4990	8277	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018736}  [Source:UniProtKB/TrEMBL;Acc:H9KWN0]
ENSCJAG00000011143	NOVEL	protein_coding	ENSCJAG00000011143	scaffold:C_jacchus3.2.1:GL285948.1:1:31312:1	4175	15984	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020553}  [Source:UniProtKB/TrEMBL;Acc:H9KWS5]
ENSCJAG00000004578	KNOWN	protein_coding	HDHD2	chromosome:C_jacchus3.2.1:13:1:117903854:1	84848467	84898281	R	Haloacid dehalogenase-like hydrolase domain-containing protein 2 {ECO:0000313|EMBL:JAB02559.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008339}  [Source:UniProtKB/TrEMBL;Acc:F7HWM7]
ENSCJAG00000010449	KNOWN	protein_coding	TMEM194A	chromosome:C_jacchus3.2.1:9:1:124281992:1	45841113	45862778	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019353}  [Source:UniProtKB/TrEMBL;Acc:F6QYK9]
ENSCJAG00000008115	NOVEL	protein_coding	ENSCJAG00000008115	chromosome:C_jacchus3.2.1:13:1:117903854:1	84752730	84754982	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014972}  [Source:UniProtKB/TrEMBL;Acc:F7IST4]
ENSCJAG00000015993	KNOWN_BY_PROJECTION	protein_coding	RPL34	chromosome:C_jacchus3.2.1:3:1:190850796:1	85008140	85013531	R	ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
ENSCJAG00000008107	KNOWN_BY_PROJECTION	protein_coding	KATNAL2	chromosome:C_jacchus3.2.1:13:1:117903854:1	84724638	84843061	D	katanin p60 subunit A-like 2 [Source:HGNC Symbol;Acc:HGNC:25387]
ENSCJAG00000016002	NOVEL	protein_coding	ENSCJAG00000016002	chromosome:C_jacchus3.2.1:3:1:190850796:1	84970014	84990830	R	<no descrition>
ENSCJAG00000014942	NOVEL	protein_coding	ENSCJAG00000014942	chromosome:C_jacchus3.2.1:11:1:130397257:1	60747373	60748301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027525}  [Source:UniProtKB/TrEMBL;Acc:F7E962]
ENSCJAG00000014939	KNOWN	protein_coding	AQP11	chromosome:C_jacchus3.2.1:11:1:130397257:1	60653991	60672595	R	Aquaporin-11 {ECO:0000313|EMBL:JAB13943.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027512}  [Source:UniProtKB/TrEMBL;Acc:F7ELM9]
ENSCJAG00000008117	KNOWN	protein_coding	PIAS2	chromosome:C_jacchus3.2.1:13:1:117903854:1	84581405	84702164	R	E3 SUMO-protein ligase PIAS2 isoform beta {ECO:0000313|EMBL:JAB07518.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015129}  [Source:UniProtKB/TrEMBL;Acc:F7DFX4]
ENSCJAG00000013608	KNOWN	protein_coding	FRMPD2	chromosome:C_jacchus3.2.1:12:1:121768101:1	35553632	35676574	D	FERM and PDZ domain-containing protein 2 isoform 3 {ECO:0000313|EMBL:JAB12460.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050347}  [Source:UniProtKB/TrEMBL;Acc:F7G393]
ENSCJAG00000014927	KNOWN	protein_coding	CLNS1A	chromosome:C_jacchus3.2.1:11:1:130397257:1	60618398	60645464	D	Methylosome subunit pICln {ECO:0000313|EMBL:JAB06130.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027504}  [Source:UniProtKB/TrEMBL;Acc:F7EM43]
ENSCJAG00000034508	NOVEL	protein_coding	ENSCJAG00000034508	chromosome:C_jacchus3.2.1:11:1:130397257:1	60583526	60584988	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045712}  [Source:UniProtKB/TrEMBL;Acc:F6TE81]
ENSCJAG00000016843	KNOWN	protein_coding	EYA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	40967204	41259692	D	Eyes absent homolog 2 isoform a {ECO:0000313|EMBL:JAB17542.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050795}  [Source:UniProtKB/TrEMBL;Acc:F7HDB2]
ENSCJAG00000008195	NOVEL	pseudogene	ENSCJAG00000008195	chromosome:C_jacchus3.2.1:13:1:117903854:1	84541621	84542563	R	<no descrition>
ENSCJAG00000014899	KNOWN	protein_coding	RSF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	60431653	60594621	D	Remodeling and spacing factor 1 {ECO:0000313|EMBL:JAB09618.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027482}  [Source:UniProtKB/TrEMBL;Acc:F7FSY0]
ENSCJAG00000014890	KNOWN	protein_coding	C11H11ORF67	chromosome:C_jacchus3.2.1:11:1:130397257:1	60366376	60431330	R	UPF0366 protein C11orf67 {ECO:0000313|EMBL:JAB12440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027427}  [Source:UniProtKB/TrEMBL;Acc:F7GPJ7]
ENSCJAG00000008199	KNOWN_BY_PROJECTION	protein_coding	ST8SIA5	chromosome:C_jacchus3.2.1:13:1:117903854:1	84442420	84522528	R	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:17827]
ENSCJAG00000016900	KNOWN_BY_PROJECTION	protein_coding	TP53RK	chromosome:C_jacchus3.2.1:5:1:159171411:1	40761561	40765444	R	TP53 regulating kinase [Source:HGNC Symbol;Acc:HGNC:16197]
ENSCJAG00000016896	KNOWN_BY_PROJECTION	protein_coding	SLC2A10	chromosome:C_jacchus3.2.1:5:1:159171411:1	40725449	40807450	D	solute carrier family 2 (facilitated glucose transporter), member 10 [Source:HGNC Symbol;Acc:HGNC:13444]
ENSCJAG00000014825	KNOWN	protein_coding	INTS4	chromosome:C_jacchus3.2.1:11:1:130397257:1	60235951	60359444	D	Integrator complex subunit 4 {ECO:0000313|EMBL:JAB06291.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027407}  [Source:UniProtKB/TrEMBL;Acc:F7GZM2]
ENSCJAG00000016009	KNOWN_BY_PROJECTION	protein_coding	ETNPPL	chromosome:C_jacchus3.2.1:3:1:190850796:1	84881350	84903767	D	ethanolamine-phosphate phospho-lyase [Source:HGNC Symbol;Acc:HGNC:14404]
ENSCJAG00000008221	KNOWN_BY_PROJECTION	protein_coding	LOXHD1	chromosome:C_jacchus3.2.1:13:1:117903854:1	84225757	84365875	R	lipoxygenase homology domains 1 [Source:HGNC Symbol;Acc:HGNC:26521]
ENSCJAG00000014824	KNOWN	protein_coding	KCTD14	chromosome:C_jacchus3.2.1:11:1:130397257:1	60212463	60221056	D	BTB/POZ domain-containing protein KCTD14 {ECO:0000313|EMBL:JAB01965.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027293}  [Source:UniProtKB/TrEMBL;Acc:F7F1R8]
ENSCJAG00000014821	NOVEL	protein_coding	ENSCJAG00000014821	chromosome:C_jacchus3.2.1:11:1:130397257:1	60169584	60170600	D	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7F1U8]
ENSCJAG00000008260	KNOWN_BY_PROJECTION	protein_coding	RNF165	chromosome:C_jacchus3.2.1:13:1:117903854:1	84180365	84204415	D	ring finger protein 165 [Source:HGNC Symbol;Acc:HGNC:31696]
ENSCJAG00000022085	KNOWN_BY_PROJECTION	protein_coding	THRSP	chromosome:C_jacchus3.2.1:11:1:130397257:1	60158617	60163700	R	thyroid hormone responsive [Source:HGNC Symbol;Acc:HGNC:11800]
ENSCJAG00000014820	NOVEL	protein_coding	ENSCJAG00000014820	chromosome:C_jacchus3.2.1:11:1:130397257:1	60153446	60154517	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027286}  [Source:UniProtKB/TrEMBL;Acc:F7FEH6]
ENSCJAG00000008283	NOVEL	pseudogene	ENSCJAG00000008283	chromosome:C_jacchus3.2.1:13:1:117903854:1	84042708	84043551	D	<no descrition>
ENSCJAG00000014814	NOVEL	protein_coding	ENSCJAG00000014814	chromosome:C_jacchus3.2.1:11:1:130397257:1	60149864	60156859	D	NADH dehydrogenase [ubiquinone] 1 subunit C2 {ECO:0000256|PIRNR:PIRNR017834}  [Source:UniProtKB/TrEMBL;Acc:F7FEK4]
ENSCJAG00000008285	KNOWN	protein_coding	C18ORF25	chromosome:C_jacchus3.2.1:13:1:117903854:1	83902429	83995762	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015303}; Uncharacterized protein C18orf25 isoform a {ECO:0000313|EMBL:JAB23421.1}  [Source:UniProtKB/TrEMBL;Acc:F7EMM2]
ENSCJAG00000008296	NOVEL	protein_coding	ENSCJAG00000008296	chromosome:C_jacchus3.2.1:13:1:117903854:1	83851658	83853421	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015310}  [Source:UniProtKB/TrEMBL;Acc:F7EME1]
ENSCJAG00000013551	KNOWN	protein_coding	MAPK8	chromosome:C_jacchus3.2.1:12:1:121768101:1	35396853	35525660	R	Mitogen-activated protein kinase 8 isoform beta2 {ECO:0000313|EMBL:JAB19264.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025008}  [Source:UniProtKB/TrEMBL;Acc:F7AK86]
ENSCJAG00000008303	KNOWN	protein_coding	HAUS1	chromosome:C_jacchus3.2.1:13:1:117903854:1	83834127	83850910	D	HAUS augmin-like complex subunit 1 {ECO:0000313|EMBL:JAB43765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015331}  [Source:UniProtKB/TrEMBL;Acc:F7E9R6]
ENSCJAG00000004001	KNOWN_BY_PROJECTION	protein_coding	ATP2C2	chromosome:C_jacchus3.2.1:20:1:44557958:1	38675846	38778642	D	ATPase, Ca++ transporting, type 2C, member 2 [Source:HGNC Symbol;Acc:HGNC:29103]
ENSCJAG00000013537	KNOWN_BY_PROJECTION	protein_coding	ARHGAP22	chromosome:C_jacchus3.2.1:12:1:121768101:1	35152985	35386405	D	Rho GTPase activating protein 22 [Source:HGNC Symbol;Acc:HGNC:30320]
ENSCJAG00000002138	NOVEL	protein_coding	ENSCJAG00000002138	chromosome:C_jacchus3.2.1:4:1:171630274:1	32579469	32593806	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003989}  [Source:UniProtKB/TrEMBL;Acc:F7DB93]
ENSCJAG00000008319	KNOWN_BY_PROJECTION	protein_coding	ATP5A1	chromosome:C_jacchus3.2.1:13:1:117903854:1	83813026	83827601	R	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle [Source:HGNC Symbol;Acc:HGNC:823]
ENSCJAG00000013525	KNOWN_BY_PROJECTION	protein_coding	LRRC18	chromosome:C_jacchus3.2.1:12:1:121768101:1	34883499	35084369	D	leucine rich repeat containing 18 [Source:HGNC Symbol;Acc:HGNC:23199]
ENSCJAG00000004000	NOVEL	pseudogene	ENSCJAG00000004000	chromosome:C_jacchus3.2.1:20:1:44557958:1	38661116	38661792	R	<no descrition>
ENSCJAG00000033580	NOVEL	protein_coding	ENSCJAG00000033580	chromosome:C_jacchus3.2.1:13:1:117903854:1	83747192	83748592	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052081}  [Source:UniProtKB/TrEMBL;Acc:F7IGW2]
ENSCJAG00000008457	KNOWN	protein_coding	PSTPIP2	chromosome:C_jacchus3.2.1:13:1:117903854:1	83690476	83794651	R	Proline-serine-threonine phosphatase-interacting protein 2 {ECO:0000313|EMBL:JAB02767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015610}  [Source:UniProtKB/TrEMBL;Acc:F7H9S1]
ENSCJAG00000001494	KNOWN	protein_coding	TRPM3	chromosome:C_jacchus3.2.1:1:1:210400635:1	98205721	98562501	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045481}  [Source:UniProtKB/TrEMBL;Acc:F6Q3P9]
ENSCJAG00000016913	KNOWN_BY_PROJECTION	protein_coding	SLC13A3	chromosome:C_jacchus3.2.1:5:1:159171411:1	40640953	40729199	R	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:14430]
ENSCJAG00000010493	KNOWN_BY_PROJECTION	protein_coding	MYO1A	chromosome:C_jacchus3.2.1:9:1:124281992:1	45813935	45835131	R	myosin IA [Source:HGNC Symbol;Acc:HGNC:7595]
ENSCJAG00000016959	KNOWN_BY_PROJECTION	protein_coding	OCSTAMP	chromosome:C_jacchus3.2.1:5:1:159171411:1	40625312	40632909	R	osteoclast stimulatory transmembrane protein [Source:HGNC Symbol;Acc:HGNC:16116]
ENSCJAG00000008484	KNOWN_BY_PROJECTION	protein_coding	EPG5	chromosome:C_jacchus3.2.1:13:1:117903854:1	83566177	83679970	R	ectopic P-granules autophagy protein 5 homolog (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29331]
ENSCJAG00000003997	KNOWN	protein_coding	WFDC1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38592049	38635331	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007258}  [Source:UniProtKB/TrEMBL;Acc:F6U2H6]
ENSCJAG00000008603	KNOWN_BY_PROJECTION	protein_coding	SIGLEC15	chromosome:C_jacchus3.2.1:13:1:117903854:1	83535041	83552265	D	sialic acid binding Ig-like lectin 15 [Source:HGNC Symbol;Acc:HGNC:27596]
ENSCJAG00000003994	KNOWN_BY_PROJECTION	protein_coding	KCNG4	chromosome:C_jacchus3.2.1:20:1:44557958:1	38504268	38525575	R	potassium channel, voltage gated modifier subfamily G, member 4 [Source:HGNC Symbol;Acc:HGNC:19697]
ENSCJAG00000004085	NOVEL	protein_coding	ENSCJAG00000004085	chromosome:C_jacchus3.2.1:13:1:117903854:1	83452545	83453806	R	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:F6PHY1]
ENSCJAG00000016964	KNOWN_BY_PROJECTION	protein_coding	ZNF334	chromosome:C_jacchus3.2.1:5:1:159171411:1	40590153	40593596	R	zinc finger protein 334 [Source:HGNC Symbol;Acc:HGNC:15806]
ENSCJAG00000004083	NOVEL	pseudogene	ENSCJAG00000004083	chromosome:C_jacchus3.2.1:13:1:117903854:1	83430821	83431850	D	<no descrition>
ENSCJAG00000003981	KNOWN_BY_PROJECTION	protein_coding	ADAD2	chromosome:C_jacchus3.2.1:20:1:44557958:1	38475491	38482087	D	adenosine deaminase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30714]
ENSCJAG00000016991	NOVEL	protein_coding	ENSCJAG00000016991	chromosome:C_jacchus3.2.1:5:1:159171411:1	40573316	40582806	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031260}  [Source:UniProtKB/TrEMBL;Acc:F7IAH9]
ENSCJAG00000017004	NOVEL	pseudogene	ENSCJAG00000017004	chromosome:C_jacchus3.2.1:5:1:159171411:1	40530518	40530830	R	<no descrition>
ENSCJAG00000010620	KNOWN_BY_PROJECTION	protein_coding	TAC3	chromosome:C_jacchus3.2.1:9:1:124281992:1	45796831	45800238	R	tachykinin 3 [Source:HGNC Symbol;Acc:HGNC:11521]
ENSCJAG00000004051	KNOWN_BY_PROJECTION	protein_coding	SLC14A2	chromosome:C_jacchus3.2.1:13:1:117903854:1	83160432	83466061	D	solute carrier family 14 (urea transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10919]
ENSCJAG00000010622	KNOWN	protein_coding	ZBTB39	chromosome:C_jacchus3.2.1:9:1:124281992:1	45781405	45788941	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019570}; Zinc finger and BTB domain-containing protein 39 {ECO:0000313|EMBL:JAB11507.1}  [Source:UniProtKB/TrEMBL;Acc:F6QCV3]
ENSCJAG00000010632	KNOWN_BY_PROJECTION	protein_coding	GPR182	chromosome:C_jacchus3.2.1:9:1:124281992:1	45777075	45779283	D	G protein-coupled receptor 182 [Source:HGNC Symbol;Acc:HGNC:13708]
ENSCJAG00000003961	KNOWN_BY_PROJECTION	protein_coding	TAF1C	chromosome:C_jacchus3.2.1:20:1:44557958:1	38462332	38469070	R	TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa [Source:HGNC Symbol;Acc:HGNC:11534]
ENSCJAG00000016327	KNOWN_BY_PROJECTION	protein_coding	SCARF2	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	243834	250802	R	scavenger receptor class F, member 2 [Source:HGNC Symbol;Acc:HGNC:19869]
ENSCJAG00000037893	KNOWN_BY_PROJECTION	protein_coding	RDH16	chromosome:C_jacchus3.2.1:9:1:124281992:1	45718240	45785993	R	retinol dehydrogenase 16 (all-trans) [Source:HGNC Symbol;Acc:HGNC:29674]
ENSCJAG00000004035	KNOWN_BY_PROJECTION	protein_coding	SETBP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	82368973	82756786	D	SET binding protein 1 [Source:HGNC Symbol;Acc:HGNC:15573]
ENSCJAG00000004033	NOVEL	protein_coding	ENSCJAG00000004033	chromosome:C_jacchus3.2.1:13:1:117903854:1	82014174	82015083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007321}  [Source:UniProtKB/TrEMBL;Acc:F6S6X6]
ENSCJAG00000034163	NOVEL	protein_coding	ENSCJAG00000034163	scaffold:C_jacchus3.2.1:ACFV01200382.1:1:2139:1	602	1039	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049585}  [Source:UniProtKB/TrEMBL;Acc:H9KYE7]
ENSCJAG00000000919	NOVEL	protein_coding	ENSCJAG00000000919	scaffold:C_jacchus3.2.1:GL290064.1:1:8198:1	269	2615	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001553}  [Source:UniProtKB/TrEMBL;Acc:H9KVN3]
ENSCJAG00000034299	NOVEL	protein_coding	ENSCJAG00000034299	scaffold:C_jacchus3.2.1:GL285913.1:1:9662:1	8642	9524	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051302}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ0]
ENSCJAG00000004002	KNOWN	protein_coding	SYT4	chromosome:C_jacchus3.2.1:13:1:117903854:1	80982453	80992171	R	Synaptotagmin-4 {ECO:0000313|EMBL:JAB22224.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007318}  [Source:UniProtKB/TrEMBL;Acc:F6S749]
ENSCJAG00000010848	KNOWN_BY_PROJECTION	protein_coding	VPREB3	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	32290	33779	R	pre-B lymphocyte 3 [Source:HGNC Symbol;Acc:HGNC:12710]
ENSCJAG00000003933	KNOWN_BY_PROJECTION	protein_coding	DNAAF1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38430176	38461436	D	dynein, axonemal, assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:30539]
ENSCJAG00000017562	KNOWN_BY_PROJECTION	protein_coding	PLEKHG4B	chromosome:C_jacchus3.2.1:2:1:204313951:1	204206983	204245839	R	pleckstrin homology domain containing, family G (with RhoGef domain) member 4B [Source:HGNC Symbol;Acc:HGNC:29399]
ENSCJAG00000003987	KNOWN	protein_coding	RIT2	chromosome:C_jacchus3.2.1:13:1:117903854:1	80447122	80841551	R	GTP-binding protein Rit2 isoform 1 {ECO:0000313|EMBL:JAB14802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007263}  [Source:UniProtKB/TrEMBL;Acc:F6TS30]
ENSCJAG00000016026	KNOWN_BY_PROJECTION	protein_coding	COL25A1	chromosome:C_jacchus3.2.1:3:1:190850796:1	84420439	84819660	D	collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
ENSCJAG00000017581	KNOWN_BY_PROJECTION	protein_coding	LRRC14B	chromosome:C_jacchus3.2.1:2:1:204313951:1	204196164	204198167	R	leucine rich repeat containing 14B [Source:HGNC Symbol;Acc:HGNC:37268]
ENSCJAG00000003920	KNOWN	protein_coding	HSDL1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38408100	38430108	R	Inactive hydroxysteroid dehydrogenase-like protein 1 isoform a {ECO:0000313|EMBL:JAB02728.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007140}  [Source:UniProtKB/TrEMBL;Acc:F6RY18]
ENSCJAG00000017582	KNOWN	protein_coding	CCDC127	chromosome:C_jacchus3.2.1:2:1:204313951:1	204178797	204188444	D	Coiled-coil domain-containing protein 127 {ECO:0000313|EMBL:JAB08316.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032391}  [Source:UniProtKB/TrEMBL;Acc:F7FJ18]
ENSCJAG00000003986	KNOWN_BY_PROJECTION	protein_coding	TXNDC15	chromosome:C_jacchus3.2.1:13:1:117903854:1	79855192	79856137	R	thioredoxin domain containing 15 [Source:HGNC Symbol;Acc:HGNC:20652]
ENSCJAG00000006573	NOVEL	protein_coding	ENSCJAG00000006573	chromosome:C_jacchus3.2.1:2:1:204313951:1	204157820	204158006	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052357}  [Source:UniProtKB/TrEMBL;Acc:F7IR30]
ENSCJAG00000014792	KNOWN	protein_coding	ALG8	chromosome:C_jacchus3.2.1:11:1:130397257:1	60098039	60130932	D	Putative dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform a {ECO:0000313|EMBL:JAB01845.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027275}  [Source:UniProtKB/TrEMBL;Acc:F7FEU8]
ENSCJAG00000003901	KNOWN	protein_coding	PIK3C3	chromosome:C_jacchus3.2.1:13:1:117903854:1	79684130	79814274	D	Phosphatidylinositol 3-kinase {ECO:0000256|PIRNR:PIRNR000587}  [Source:UniProtKB/TrEMBL;Acc:F6PSS8]
ENSCJAG00000010641	KNOWN	protein_coding	SDR9C7	chromosome:C_jacchus3.2.1:9:1:124281992:1	45704502	45715291	R	Short-chain dehydrogenase/reductase family 9C member 7 {ECO:0000313|EMBL:JAB03074.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019606}  [Source:UniProtKB/TrEMBL;Acc:F6PH06]
ENSCJAG00000014788	KNOWN_BY_PROJECTION	protein_coding	KCTD21	chromosome:C_jacchus3.2.1:11:1:130397257:1	60046008	60062265	D	potassium channel tetramerization domain containing 21 [Source:HGNC Symbol;Acc:HGNC:27452]
ENSCJAG00000017820	KNOWN_BY_PROJECTION	protein_coding	CYP11A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	16636165	16653813	R	cytochrome P450, family 11, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2590]
ENSCJAG00000010652	KNOWN	protein_coding	HSD17B6	chromosome:C_jacchus3.2.1:9:1:124281992:1	45607669	45636311	D	17-beta-hydroxysteroid dehydrogenase type 6 {ECO:0000313|EMBL:JAB07596.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050139}  [Source:UniProtKB/TrEMBL;Acc:F7H4D9]
ENSCJAG00000014781	KNOWN_BY_PROJECTION	protein_coding	USP35	chromosome:C_jacchus3.2.1:11:1:130397257:1	60018522	60037967	R	ubiquitin specific peptidase 35 [Source:HGNC Symbol;Acc:HGNC:20061]
ENSCJAG00000017007	KNOWN_BY_PROJECTION	protein_coding	ELMO2	chromosome:C_jacchus3.2.1:5:1:159171411:1	40440685	40473864	R	engulfment and cell motility 2 [Source:HGNC Symbol;Acc:HGNC:17233]
ENSCJAG00000014761	KNOWN_BY_PROJECTION	protein_coding	GAB2	chromosome:C_jacchus3.2.1:11:1:130397257:1	59792768	60013815	D	GRB2-associated binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14458]
ENSCJAG00000010662	KNOWN	protein_coding	PRIM1	chromosome:C_jacchus3.2.1:9:1:124281992:1	45565940	45599060	R	DNA primase {ECO:0000256|RuleBase:RU003514}  [Source:UniProtKB/TrEMBL;Acc:F6Y809]
ENSCJAG00000014753	KNOWN	protein_coding	NARS2	chromosome:C_jacchus3.2.1:11:1:130397257:1	59602632	59772832	D	Putative asparagine--tRNA ligase, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB25829.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027172}  [Source:UniProtKB/TrEMBL;Acc:F7H5A9]
ENSCJAG00000017583	KNOWN_BY_PROJECTION	protein_coding	SDHA	chromosome:C_jacchus3.2.1:2:1:204313951:1	204147572	204176265	R	succinate dehydrogenase complex, subunit A, flavoprotein (Fp) [Source:HGNC Symbol;Acc:HGNC:10680]
ENSCJAG00000021135	KNOWN	protein_coding	CELF4	chromosome:C_jacchus3.2.1:13:1:117903854:1	74936295	75265410	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039355}  [Source:UniProtKB/TrEMBL;Acc:F7HAA8]
ENSCJAG00000014733	KNOWN_BY_PROJECTION	protein_coding	TENM4	chromosome:C_jacchus3.2.1:11:1:130397257:1	58958953	59545699	D	teneurin transmembrane protein 4 [Source:HGNC Symbol;Acc:HGNC:29945]
ENSCJAG00000010701	KNOWN	protein_coding	NACA	chromosome:C_jacchus3.2.1:9:1:124281992:1	45544768	45558648	R	Nascent polypeptide-associated complex subunit alpha isoform b {ECO:0000313|EMBL:JAB33694.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019744}  [Source:UniProtKB/TrEMBL;Acc:F6WYB8]
ENSCJAG00000033655	NOVEL	protein_coding	ENSCJAG00000033655	chromosome:C_jacchus3.2.1:9:1:124281992:1	45521734	45525427	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050827}  [Source:UniProtKB/TrEMBL;Acc:F7GD61]
ENSCJAG00000002228	KNOWN_BY_PROJECTION	protein_coding	STK19	chromosome:C_jacchus3.2.1:4:1:171630274:1	32564484	32577551	D	serine/threonine kinase 19 [Source:HGNC Symbol;Acc:HGNC:11398]
ENSCJAG00000021134	KNOWN_BY_PROJECTION	protein_coding	CARHSP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	74850150	74850593	D	calcium regulated heat stable protein 1, 24kDa [Source:HGNC Symbol;Acc:HGNC:17150]
ENSCJAG00000014722	KNOWN_BY_PROJECTION	protein_coding	BNIP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	58750053	58774473	D	BCL2/adenovirus E1B 19kDa interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:1083]
ENSCJAG00000017613	KNOWN_BY_PROJECTION	protein_coding	AHRR	chromosome:C_jacchus3.2.1:2:1:204313951:1	203981423	204126996	R	aryl-hydrocarbon receptor repressor [Source:HGNC Symbol;Acc:HGNC:346]
ENSCJAG00000034896	NOVEL	pseudogene	ENSCJAG00000034896	chromosome:C_jacchus3.2.1:11:1:130397257:1	57442314	57442752	D	<no descrition>
ENSCJAG00000015281	NOVEL	pseudogene	ENSCJAG00000015281	chromosome:C_jacchus3.2.1:11:1:130397257:1	56319745	56320502	R	<no descrition>
ENSCJAG00000033827	NOVEL	pseudogene	ENSCJAG00000033827	chromosome:C_jacchus3.2.1:11:1:130397257:1	56156481	56157238	R	<no descrition>
ENSCJAG00000014709	KNOWN	protein_coding	FAM181B	chromosome:C_jacchus3.2.1:11:1:130397257:1	55289753	55291614	D	Protein FAM181B {ECO:0000313|EMBL:JAB05080.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042161}  [Source:UniProtKB/TrEMBL;Acc:F6V7Z5]
ENSCJAG00000021130	KNOWN_BY_PROJECTION	protein_coding	KIAA1328	chromosome:C_jacchus3.2.1:13:1:117903854:1	74547486	74923097	D	KIAA1328 [Source:HGNC Symbol;Acc:HGNC:29248]
ENSCJAG00000002246	KNOWN	protein_coding	DXO	chromosome:C_jacchus3.2.1:4:1:171630274:1	32563128	32565546	R	Protein Dom3Z {ECO:0000313|EMBL:JAB12194.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004056}  [Source:UniProtKB/TrEMBL;Acc:F6XJ66]
ENSCJAG00000021123	KNOWN	protein_coding	TPGS2	chromosome:C_jacchus3.2.1:13:1:117903854:1	74515623	74547574	R	Tubulin polyglutamylase complex subunit 2 isoform 1 {ECO:0000313|EMBL:JAB02892.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039320}  [Source:UniProtKB/TrEMBL;Acc:F7CVU1]
ENSCJAG00000003829	KNOWN	protein_coding	MBTPS1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38337034	38399901	R	Membrane-bound transcription factor site-1 protease preproprotein {ECO:0000313|EMBL:JAB09599.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007109}  [Source:UniProtKB/TrEMBL;Acc:F6S9I5]
ENSCJAG00000017659	KNOWN_BY_PROJECTION	protein_coding	EXOC3	chromosome:C_jacchus3.2.1:2:1:204313951:1	203952122	203971750	R	exocyst complex component 3 [Source:HGNC Symbol;Acc:HGNC:30378]
ENSCJAG00000017684	NOVEL	pseudogene	ENSCJAG00000017684	chromosome:C_jacchus3.2.1:2:1:204313951:1	203940077	203940294	R	<no descrition>
ENSCJAG00000017841	KNOWN_BY_PROJECTION	protein_coding	CCDC33	chromosome:C_jacchus3.2.1:10:1:132174527:1	16531401	16634927	D	coiled-coil domain containing 33 [Source:HGNC Symbol;Acc:HGNC:26552]
ENSCJAG00000001452	KNOWN_BY_PROJECTION	protein_coding	TMEM2	chromosome:C_jacchus3.2.1:1:1:210400635:1	97302513	97386130	D	transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:11869]
ENSCJAG00000013528	KNOWN_BY_PROJECTION	protein_coding	WDFY4	chromosome:C_jacchus3.2.1:12:1:121768101:1	34835446	35126614	R	WDFY family member 4 [Source:HGNC Symbol;Acc:HGNC:29323]
ENSCJAG00000003812	KNOWN_BY_PROJECTION	protein_coding	SLC38A8	chromosome:C_jacchus3.2.1:20:1:44557958:1	38297250	38327353	R	solute carrier family 38, member 8 [Source:HGNC Symbol;Acc:HGNC:32434]
ENSCJAG00000021104	KNOWN_BY_PROJECTION	protein_coding	FHOD3	chromosome:C_jacchus3.2.1:13:1:117903854:1	73966354	74503015	D	formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
ENSCJAG00000032743	NOVEL	protein_coding	ENSCJAG00000032743	chromosome:C_jacchus3.2.1:10:1:132174527:1	16501518	16503765	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043916}  [Source:UniProtKB/TrEMBL;Acc:F7HVV6]
ENSCJAG00000017670	KNOWN_BY_PROJECTION	protein_coding	SLC9A3	chromosome:C_jacchus3.2.1:2:1:204313951:1	203886827	203945630	D	solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 [Source:HGNC Symbol;Acc:HGNC:11073]
ENSCJAG00000017691	NOVEL	protein_coding	ENSCJAG00000017691	chromosome:C_jacchus3.2.1:2:1:204313951:1	203790365	203791272	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032600}  [Source:UniProtKB/TrEMBL;Acc:F7ERS6]
ENSCJAG00000017091	KNOWN	protein_coding	SLC35C2	chromosome:C_jacchus3.2.1:5:1:159171411:1	40424576	40433703	R	Solute carrier family 35 member C2 isoform a {ECO:0000313|EMBL:JAB04487.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046514}  [Source:UniProtKB/TrEMBL;Acc:F7I8K2]
ENSCJAG00000021092	KNOWN_BY_PROJECTION	protein_coding	MOCOS	chromosome:C_jacchus3.2.1:13:1:117903854:1	73849166	73928197	D	molybdenum cofactor sulfurase [Source:HGNC Symbol;Acc:HGNC:18234]
ENSCJAG00000010240	KNOWN	protein_coding	TPPP	chromosome:C_jacchus3.2.1:2:1:204313951:1	203734638	203749364	D	Tubulin polymerization-promoting protein {ECO:0000313|EMBL:JAB02433.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018866}  [Source:UniProtKB/TrEMBL;Acc:F7HG42]
ENSCJAG00000015720	KNOWN_BY_PROJECTION	protein_coding	CEP72	chromosome:C_jacchus3.2.1:2:1:204313951:1	203757914	203796072	R	centrosomal protein 72kDa [Source:HGNC Symbol;Acc:HGNC:25547]
ENSCJAG00000001448	KNOWN	protein_coding	ABHD17B	chromosome:C_jacchus3.2.1:1:1:210400635:1	97161088	97211725	D	Abhydrolase domain-containing protein FAM108B1 isoform 2 {ECO:0000313|EMBL:JAB03609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002565}  [Source:UniProtKB/TrEMBL;Acc:F7IIR9]
ENSCJAG00000018670	NOVEL	protein_coding	ENSCJAG00000018670	chromosome:C_jacchus3.2.1:2:1:204313951:1	203642531	203643205	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034675}  [Source:UniProtKB/TrEMBL;Acc:F7IMI6]
ENSCJAG00000032463	NOVEL	pseudogene	ENSCJAG00000032463	chromosome:C_jacchus3.2.1:2:1:204313951:1	203701159	203701369	D	<no descrition>
ENSCJAG00000020837	NOVEL	pseudogene	ENSCJAG00000020837	chromosome:C_jacchus3.2.1:1:1:210400635:1	97146373	97146589	D	<no descrition>
ENSCJAG00000035900	NOVEL	protein_coding	ENSCJAG00000035900	chromosome:C_jacchus3.2.1:1:1:210400635:1	97102873	97103457	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052312}  [Source:UniProtKB/TrEMBL;Acc:F7HVG6]
ENSCJAG00000001441	KNOWN	protein_coding	C9ORF85	chromosome:C_jacchus3.2.1:1:1:210400635:1	97096881	97160811	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002556}; Uncharacterized protein C9orf85 {ECO:0000313|EMBL:JAB04500.1}  [Source:UniProtKB/TrEMBL;Acc:F7IL10]
ENSCJAG00000013502	KNOWN_BY_PROJECTION	protein_coding	VSTM4	chromosome:C_jacchus3.2.1:12:1:121768101:1	34704484	34801900	D	V-set and transmembrane domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26470]
ENSCJAG00000021063	KNOWN_BY_PROJECTION	protein_coding	ELP2	chromosome:C_jacchus3.2.1:13:1:117903854:1	73794843	73840931	D	elongator acetyltransferase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:18248]
ENSCJAG00000013498	KNOWN_BY_PROJECTION	protein_coding	FAM170B	chromosome:C_jacchus3.2.1:12:1:121768101:1	34674129	34676871	D	family with sequence similarity 170, member B [Source:HGNC Symbol;Acc:HGNC:19736]
ENSCJAG00000013489	KNOWN_BY_PROJECTION	protein_coding	C10orf128	chromosome:C_jacchus3.2.1:12:1:121768101:1	34614683	34651882	D	chromosome 10 open reading frame 128 [Source:HGNC Symbol;Acc:HGNC:27274]
ENSCJAG00000003867	KNOWN_BY_PROJECTION	protein_coding	BRD9	chromosome:C_jacchus3.2.1:2:1:204313951:1	203568381	203610130	D	bromodomain containing 9 [Source:HGNC Symbol;Acc:HGNC:25818]
ENSCJAG00000003789	KNOWN_BY_PROJECTION	protein_coding	NECAB2	chromosome:C_jacchus3.2.1:20:1:44557958:1	38253217	38289560	D	N-terminal EF-hand calcium binding protein 2 [Source:HGNC Symbol;Acc:HGNC:23746]
ENSCJAG00000001439	KNOWN_BY_PROJECTION	protein_coding	C9orf57	chromosome:C_jacchus3.2.1:1:1:210400635:1	97035290	97045916	D	chromosome 9 open reading frame 57 [Source:HGNC Symbol;Acc:HGNC:27037]
ENSCJAG00000003778	KNOWN	protein_coding	OSGIN1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38233863	38251222	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006844}  [Source:UniProtKB/TrEMBL;Acc:F7CY93]
ENSCJAG00000014662	KNOWN_BY_PROJECTION	protein_coding	PRCP	chromosome:C_jacchus3.2.1:11:1:130397257:1	55104245	55183597	D	prolylcarboxypeptidase (angiotensinase C) [Source:HGNC Symbol;Acc:HGNC:9344]
ENSCJAG00000000633	NOVEL	protein_coding	ENSCJAG00000000633	chromosome:C_jacchus3.2.1:20:1:44557958:1	38173035	38193476	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001091}  [Source:UniProtKB/TrEMBL;Acc:F6ZJK2]
ENSCJAG00000000640	NOVEL	protein_coding	ENSCJAG00000000640	chromosome:C_jacchus3.2.1:20:1:44557958:1	38089726	38090367	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001093}  [Source:UniProtKB/TrEMBL;Acc:F6ZJH9]
ENSCJAG00000014654	KNOWN_BY_PROJECTION	protein_coding	DDIAS	chromosome:C_jacchus3.2.1:11:1:130397257:1	55073795	55104220	R	DNA damage-induced apoptosis suppressor [Source:HGNC Symbol;Acc:HGNC:26351]
ENSCJAG00000001414	KNOWN_BY_PROJECTION	protein_coding	GDA	chromosome:C_jacchus3.2.1:1:1:210400635:1	96826904	97024043	R	guanine deaminase [Source:HGNC Symbol;Acc:HGNC:4212]
ENSCJAG00000021051	KNOWN_BY_PROJECTION	protein_coding	SLC39A6	chromosome:C_jacchus3.2.1:13:1:117903854:1	73760257	73794334	R	solute carrier family 39 (zinc transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:18607]
ENSCJAG00000017106	KNOWN_BY_PROJECTION	protein_coding	CDH22	chromosome:C_jacchus3.2.1:5:1:159171411:1	40235027	40305787	R	cadherin 22, type 2 [Source:HGNC Symbol;Acc:HGNC:13251]
ENSCJAG00000000641	KNOWN_BY_PROJECTION	protein_coding	HSBP1	chromosome:C_jacchus3.2.1:20:1:44557958:1	38072705	38077542	D	heat shock factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5203]
ENSCJAG00000014642	KNOWN	protein_coding	RAB30	chromosome:C_jacchus3.2.1:11:1:130397257:1	54939778	55035470	D	Ras-related protein Rab-30 {ECO:0000313|EMBL:JAB13618.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026966}  [Source:UniProtKB/TrEMBL;Acc:F7IQG3]
ENSCJAG00000017119	KNOWN_BY_PROJECTION	protein_coding	CD40	chromosome:C_jacchus3.2.1:5:1:159171411:1	40175953	40187296	D	CD40 molecule, TNF receptor superfamily member 5 [Source:HGNC Symbol;Acc:HGNC:11919]
ENSCJAG00000033924	NOVEL	protein_coding	ENSCJAG00000033924	chromosome:C_jacchus3.2.1:5:1:159171411:1	40155525	40156049	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042262}  [Source:UniProtKB/TrEMBL;Acc:F7A9B4]
ENSCJAG00000021044	KNOWN	protein_coding	RPRD1A	chromosome:C_jacchus3.2.1:13:1:117903854:1	73625972	73700422	R	Regulation of nuclear pre-mRNA domain-containing protein 1A {ECO:0000313|EMBL:JAB06287.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044700}  [Source:UniProtKB/TrEMBL;Acc:F7GW04]
ENSCJAG00000001407	KNOWN	protein_coding	ZFAND5	chromosome:C_jacchus3.2.1:1:1:210400635:1	96730876	96740970	D	AN1-type zinc finger protein 5 {ECO:0000313|EMBL:JAB05650.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002488}  [Source:UniProtKB/TrEMBL;Acc:F7HV60]
ENSCJAG00000017863	KNOWN_BY_PROJECTION	protein_coding	STRA6	chromosome:C_jacchus3.2.1:10:1:132174527:1	16456408	16489008	R	stimulated by retinoic acid 6 [Source:HGNC Symbol;Acc:HGNC:30650]
ENSCJAG00000001397	NOVEL	pseudogene	ENSCJAG00000001397	chromosome:C_jacchus3.2.1:1:1:210400635:1	96589824	96591852	R	<no descrition>
ENSCJAG00000016082	KNOWN	protein_coding	SEC24B	chromosome:C_jacchus3.2.1:3:1:190850796:1	84164420	84270492	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029695}  [Source:UniProtKB/TrEMBL;Acc:F7INY3]
ENSCJAG00000017137	KNOWN	protein_coding	NCOA5	chromosome:C_jacchus3.2.1:5:1:159171411:1	40118021	40147157	R	Nuclear receptor coactivator 5 {ECO:0000313|EMBL:JAB11643.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031503}  [Source:UniProtKB/TrEMBL;Acc:F7I0W5]
ENSCJAG00000001395	NOVEL	protein_coding	ENSCJAG00000001395	chromosome:C_jacchus3.2.1:1:1:210400635:1	96585968	96587612	D	<no descrition>
ENSCJAG00000021041	KNOWN_BY_PROJECTION	protein_coding	C18orf21	chromosome:C_jacchus3.2.1:13:1:117903854:1	73601924	73608788	D	chromosome 18 open reading frame 21 [Source:HGNC Symbol;Acc:HGNC:28802]
ENSCJAG00000021040	NOVEL	protein_coding	ENSCJAG00000021040	chromosome:C_jacchus3.2.1:13:1:117903854:1	73581401	73583397	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039153}  [Source:UniProtKB/TrEMBL;Acc:F7H580]
ENSCJAG00000014595	KNOWN	protein_coding	PCF11	chromosome:C_jacchus3.2.1:11:1:130397257:1	54837109	54865676	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026910}  [Source:UniProtKB/TrEMBL;Acc:F7HUU9]
ENSCJAG00000035186	NOVEL	protein_coding	ENSCJAG00000035186	chromosome:C_jacchus3.2.1:13:1:117903854:1	73581190	73583615	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}  [Source:UniProtKB/TrEMBL;Acc:F7H581]
ENSCJAG00000008343	KNOWN_BY_PROJECTION	protein_coding	CDH13	chromosome:C_jacchus3.2.1:20:1:44557958:1	36813699	38060001	D	cadherin 13 [Source:HGNC Symbol;Acc:HGNC:1753]
ENSCJAG00000034660	NOVEL	protein_coding	ENSCJAG00000034660	chromosome:C_jacchus3.2.1:20:1:44557958:1	36397859	36398110	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051668}  [Source:UniProtKB/TrEMBL;Acc:F6YH48]
ENSCJAG00000014555	KNOWN_BY_PROJECTION	protein_coding	ANKRD42	chromosome:C_jacchus3.2.1:11:1:130397257:1	54739207	54827299	R	ankyrin repeat domain 42 [Source:HGNC Symbol;Acc:HGNC:26752]
ENSCJAG00000016498	KNOWN	protein_coding	MPHOSPH6	chromosome:C_jacchus3.2.1:20:1:44557958:1	36303965	36330231	R	M-phase phosphoprotein 6 {ECO:0000313|EMBL:JAB39952.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030357}  [Source:UniProtKB/TrEMBL;Acc:F6WBC1]
ENSCJAG00000014547	NOVEL	protein_coding	ENSCJAG00000014547	chromosome:C_jacchus3.2.1:11:1:130397257:1	54714871	54732218	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026778}  [Source:UniProtKB/TrEMBL;Acc:F7IG56]
ENSCJAG00000016154	NOVEL	pseudogene	ENSCJAG00000016154	chromosome:C_jacchus3.2.1:3:1:190850796:1	84145453	84145958	R	<no descrition>
ENSCJAG00000014545	NOVEL	protein_coding	ENSCJAG00000014545	chromosome:C_jacchus3.2.1:11:1:130397257:1	54653733	54655213	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026763}  [Source:UniProtKB/TrEMBL;Acc:F7IG86]
ENSCJAG00000036997	NOVEL	protein_coding	ENSCJAG00000036997	chromosome:C_jacchus3.2.1:11:1:130397257:1	54484689	54486937	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046156}  [Source:UniProtKB/TrEMBL;Acc:F6VV00]
ENSCJAG00000013476	KNOWN_BY_PROJECTION	protein_coding	DRGX	chromosome:C_jacchus3.2.1:12:1:121768101:1	34374492	34405077	D	dorsal root ganglia homeobox [Source:HGNC Symbol;Acc:HGNC:21536]
ENSCJAG00000014543	NOVEL	pseudogene	ENSCJAG00000014543	chromosome:C_jacchus3.2.1:11:1:130397257:1	53787193	53788296	D	<no descrition>
ENSCJAG00000021030	KNOWN	protein_coding	GALNT1	chromosome:C_jacchus3.2.1:13:1:117903854:1	73279377	73346075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039151}  [Source:UniProtKB/TrEMBL;Acc:F7H583]
ENSCJAG00000016505	KNOWN	protein_coding	HSD17B2	chromosome:C_jacchus3.2.1:20:1:44557958:1	36191449	36256857	D	Estradiol 17-beta-dehydrogenase 2 {ECO:0000313|EMBL:JAB11323.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030374}  [Source:UniProtKB/TrEMBL;Acc:F6VR90]
ENSCJAG00000013484	KNOWN_BY_PROJECTION	protein_coding	C10orf71	chromosome:C_jacchus3.2.1:12:1:121768101:1	34369567	34488960	R	chromosome 10 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:26973]
ENSCJAG00000003849	KNOWN_BY_PROJECTION	protein_coding	TRIP13	chromosome:C_jacchus3.2.1:2:1:204313951:1	203502965	203567679	R	thyroid hormone receptor interactor 13 [Source:HGNC Symbol;Acc:HGNC:12307]
ENSCJAG00000016513	NOVEL	protein_coding	ENSCJAG00000016513	chromosome:C_jacchus3.2.1:20:1:44557958:1	36141954	36154082	R	<no descrition>
ENSCJAG00000021025	KNOWN_BY_PROJECTION	protein_coding	INO80C	chromosome:C_jacchus3.2.1:13:1:117903854:1	73096113	73131030	R	INO80 complex subunit C [Source:HGNC Symbol;Acc:HGNC:26994]
ENSCJAG00000011296	KNOWN_BY_PROJECTION	protein_coding	NKD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	203396405	203405936	R	naked cuticle homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17046]
ENSCJAG00000016158	KNOWN	protein_coding	CCDC109B	chromosome:C_jacchus3.2.1:3:1:190850796:1	83997847	84142344	R	Coiled-coil domain-containing protein 109B {ECO:0000313|EMBL:JAB01759.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029743}  [Source:UniProtKB/TrEMBL;Acc:F7I7H5]
ENSCJAG00000021024	NOVEL	protein_coding	ENSCJAG00000021024	chromosome:C_jacchus3.2.1:13:1:117903854:1	73036657	73038388	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039122}  [Source:UniProtKB/TrEMBL;Acc:F7HFN9]
ENSCJAG00000017885	KNOWN_BY_PROJECTION	protein_coding	ISLR	chromosome:C_jacchus3.2.1:10:1:132174527:1	16450623	16453822	D	immunoglobulin superfamily containing leucine-rich repeat [Source:HGNC Symbol;Acc:HGNC:6133]
ENSCJAG00000021019	KNOWN	protein_coding	ZNF24	chromosome:C_jacchus3.2.1:13:1:117903854:1	72955449	72963906	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039117}; Zinc finger protein 24 {ECO:0000313|EMBL:JAB08364.1}  [Source:UniProtKB/TrEMBL;Acc:F7HFU1]
ENSCJAG00000033994	NOVEL	protein_coding	ENSCJAG00000033994	chromosome:C_jacchus3.2.1:13:1:117903854:1	72915662	72928120	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044990}  [Source:UniProtKB/TrEMBL;Acc:F7FV82]
ENSCJAG00000001348	KNOWN_BY_PROJECTION	protein_coding	TMC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	96239957	96460471	R	transmembrane channel-like 1 [Source:HGNC Symbol;Acc:HGNC:16513]
ENSCJAG00000011196	KNOWN_BY_PROJECTION	protein_coding	SLC6A19	chromosome:C_jacchus3.2.1:2:1:204313951:1	203311383	203334998	R	solute carrier family 6 (neutral amino acid transporter), member 19 [Source:HGNC Symbol;Acc:HGNC:27960]
ENSCJAG00000021015	NOVEL	protein_coding	ENSCJAG00000021015	chromosome:C_jacchus3.2.1:13:1:117903854:1	72880757	72882132	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039113}  [Source:UniProtKB/TrEMBL;Acc:F7HFU9]
ENSCJAG00000010724	KNOWN	protein_coding	PTGES3	chromosome:C_jacchus3.2.1:9:1:124281992:1	45490160	45514691	R	Prostaglandin E synthase 3 {ECO:0000313|EMBL:JAB06945.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019830}  [Source:UniProtKB/TrEMBL;Acc:F7C8H0]
ENSCJAG00000021007	KNOWN	protein_coding	ZSCAN30	chromosome:C_jacchus3.2.1:13:1:117903854:1	72875945	72915568	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039104}; Zinc finger and SCAN domain-containing protein 30 {ECO:0000313|EMBL:JAB20027.1}  [Source:UniProtKB/TrEMBL;Acc:F7CWE8]
ENSCJAG00000017149	KNOWN	protein_coding	SLC12A5	chromosome:C_jacchus3.2.1:5:1:159171411:1	40077535	40117033	D	Solute carrier family 12 member 5 isoform 2 {ECO:0000313|EMBL:JAB19765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031640}  [Source:UniProtKB/TrEMBL;Acc:F7ICH0]
ENSCJAG00000036709	KNOWN_BY_PROJECTION	protein_coding	SLC6A18	chromosome:C_jacchus3.2.1:2:1:204313951:1	203287781	203303058	R	solute carrier family 6 (neutral amino acid transporter), member 18 [Source:HGNC Symbol;Acc:HGNC:26441]
ENSCJAG00000011276	KNOWN_BY_PROJECTION	protein_coding	TERT	chromosome:C_jacchus3.2.1:2:1:204313951:1	203243222	203282006	D	telomerase reverse transcriptase [Source:HGNC Symbol;Acc:HGNC:11730]
ENSCJAG00000021000	KNOWN_BY_PROJECTION	protein_coding	ZNF397	chromosome:C_jacchus3.2.1:13:1:117903854:1	72865742	72885093	D	zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
ENSCJAG00000037992	NOVEL	protein_coding	ENSCJAG00000037992	chromosome:C_jacchus3.2.1:2:1:204313951:1	203160612	203161029	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020745}  [Source:UniProtKB/TrEMBL;Acc:F7H116]
ENSCJAG00000016170	KNOWN_BY_PROJECTION	protein_coding	CASP6	chromosome:C_jacchus3.2.1:3:1:190850796:1	83979090	83996588	D	caspase 6, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:1507]
ENSCJAG00000033571	KNOWN_BY_PROJECTION	protein_coding	ATP5B	chromosome:C_jacchus3.2.1:9:1:124281992:1	45466481	45477303	R	ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:830]
ENSCJAG00000016169	KNOWN	protein_coding	PLA2G12A	chromosome:C_jacchus3.2.1:3:1:190850796:1	83949374	83971438	D	Group XIIA secretory phospholipase A2 {ECO:0000313|EMBL:JAB05012.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029748}  [Source:UniProtKB/TrEMBL;Acc:F7I7H2]
ENSCJAG00000020995	KNOWN	protein_coding	MAPRE2	chromosome:C_jacchus3.2.1:13:1:117903854:1	72592615	72773977	D	Microtubule-associated protein RP/EB family member 2 isoform 1 {ECO:0000313|EMBL:JAB08225.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039075}  [Source:UniProtKB/TrEMBL;Acc:F7EAS4]
ENSCJAG00000016515	KNOWN_BY_PROJECTION	protein_coding	PLCG2	chromosome:C_jacchus3.2.1:20:1:44557958:1	35913281	36094976	D	phospholipase C, gamma 2 (phosphatidylinositol-specific) [Source:HGNC Symbol;Acc:HGNC:9066]
ENSCJAG00000004249	NOVEL	protein_coding	ENSCJAG00000004249	chromosome:C_jacchus3.2.1:3:1:190850796:1	83873432	83942588	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007703}  [Source:UniProtKB/TrEMBL;Acc:F6Y8T3]
ENSCJAG00000011089	KNOWN_BY_PROJECTION	protein_coding	SLC6A3	chromosome:C_jacchus3.2.1:2:1:204313951:1	203103228	203160687	D	solute carrier family 6 (neurotransmitter transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:11049]
ENSCJAG00000011062	KNOWN_BY_PROJECTION	protein_coding	LPCAT1	chromosome:C_jacchus3.2.1:2:1:204313951:1	203018772	203083714	D	lysophosphatidylcholine acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:25718]
ENSCJAG00000001331	KNOWN	protein_coding	ALDH1A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	96110308	96170729	D	Retinal dehydrogenase 1 {ECO:0000313|EMBL:JAB02181.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002372}  [Source:UniProtKB/TrEMBL;Acc:F7IE41]
ENSCJAG00000004041	KNOWN	protein_coding	GAR1	chromosome:C_jacchus3.2.1:3:1:190850796:1	83855964	83865457	R	H/ACA ribonucleoprotein complex subunit 1 {ECO:0000313|EMBL:JAB01687.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007347}  [Source:UniProtKB/TrEMBL;Acc:F6RKS9]
ENSCJAG00000016538	KNOWN_BY_PROJECTION	protein_coding	CMIP	chromosome:C_jacchus3.2.1:20:1:44557958:1	35734394	35834181	D	c-Maf inducing protein [Source:HGNC Symbol;Acc:HGNC:24319]
ENSCJAG00000016570	NOVEL	pseudogene	ENSCJAG00000016570	chromosome:C_jacchus3.2.1:20:1:44557958:1	35543642	35544225	R	<no descrition>
ENSCJAG00000019382	KNOWN_BY_PROJECTION	protein_coding	NDUFS6	chromosome:C_jacchus3.2.1:2:1:204313951:1	202771805	202789359	R	NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:HGNC:7713]
ENSCJAG00000016571	KNOWN_BY_PROJECTION	protein_coding	GAN	chromosome:C_jacchus3.2.1:20:1:44557958:1	35451392	35508794	D	gigaxonin [Source:HGNC Symbol;Acc:HGNC:4137]
ENSCJAG00000009376	KNOWN_BY_PROJECTION	protein_coding	IRX4	chromosome:C_jacchus3.2.1:2:1:204313951:1	202702437	202706949	D	iroquois homeobox 4 [Source:HGNC Symbol;Acc:HGNC:6129]
ENSCJAG00000013427	KNOWN	protein_coding	PGBD3	chromosome:C_jacchus3.2.1:12:1:121768101:1	34186498	34284048	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024726}  [Source:UniProtKB/TrEMBL;Acc:F6RSP5]
ENSCJAG00000017207	KNOWN	protein_coding	MMP9	chromosome:C_jacchus3.2.1:5:1:159171411:1	40064047	40071350	D	Matrix metalloproteinase-9 preproprotein {ECO:0000313|EMBL:JAB41082.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031649}  [Source:UniProtKB/TrEMBL;Acc:F7ICF8]
ENSCJAG00000013140	KNOWN	protein_coding	SLC18A3	chromosome:C_jacchus3.2.1:12:1:121768101:1	34109269	34112487	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024122}; Vesicular acetylcholine transporter {ECO:0000313|EMBL:JAB14794.1}  [Source:UniProtKB/TrEMBL;Acc:F7E6H9]
ENSCJAG00000014492	KNOWN_BY_PROJECTION	protein_coding	DLG2	chromosome:C_jacchus3.2.1:11:1:130397257:1	53629789	54486900	D	discs, large homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:2901]
ENSCJAG00000004028	KNOWN_BY_PROJECTION	protein_coding	RRH	chromosome:C_jacchus3.2.1:3:1:190850796:1	83834957	83852551	R	retinal pigment epithelium-derived rhodopsin homolog [Source:HGNC Symbol;Acc:HGNC:10450]
ENSCJAG00000020947	KNOWN	protein_coding	DTNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	72092387	72485468	D	Dystrobrevin alpha isoform 4 {ECO:0000313|EMBL:JAB39297.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039047}  [Source:UniProtKB/TrEMBL;Acc:F7F217]
ENSCJAG00000016580	KNOWN_BY_PROJECTION	protein_coding	BCO1	chromosome:C_jacchus3.2.1:20:1:44557958:1	35369960	35425876	D	beta-carotene oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:13815]
ENSCJAG00000010774	KNOWN	protein_coding	BAZ2A	chromosome:C_jacchus3.2.1:9:1:124281992:1	45424812	45464734	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019896}  [Source:UniProtKB/TrEMBL;Acc:F7BST3]
ENSCJAG00000016609	NOVEL	protein_coding	ENSCJAG00000016609	chromosome:C_jacchus3.2.1:20:1:44557958:1	35232746	35347798	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030613}  [Source:UniProtKB/TrEMBL;Acc:F7C5T1]
ENSCJAG00000002263	KNOWN	protein_coding	SKIV2L	chromosome:C_jacchus3.2.1:4:1:171630274:1	32552388	32563069	D	Helicase SKI2W {ECO:0000313|EMBL:JAB12487.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004259}  [Source:UniProtKB/TrEMBL;Acc:F6Y4X2]
ENSCJAG00000014491	NOVEL	protein_coding	ENSCJAG00000014491	chromosome:C_jacchus3.2.1:11:1:130397257:1	53375420	53376285	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026637}  [Source:UniProtKB/TrEMBL;Acc:F7HZR2]
ENSCJAG00000014487	NOVEL	pseudogene	ENSCJAG00000014487	chromosome:C_jacchus3.2.1:11:1:130397257:1	53303243	53304478	D	<no descrition>
ENSCJAG00000014486	NOVEL	pseudogene	ENSCJAG00000014486	chromosome:C_jacchus3.2.1:11:1:130397257:1	52261904	52262351	R	<no descrition>
ENSCJAG00000004015	KNOWN_BY_PROJECTION	protein_coding	LRIT3	chromosome:C_jacchus3.2.1:3:1:190850796:1	83795433	83831102	R	leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 [Source:HGNC Symbol;Acc:HGNC:24783]
ENSCJAG00000014472	KNOWN	protein_coding	TMEM126B	chromosome:C_jacchus3.2.1:11:1:130397257:1	52242150	52249063	R	Transmembrane protein 126B isoform a {ECO:0000313|EMBL:JAB03009.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026622}  [Source:UniProtKB/TrEMBL;Acc:F7HZV3]
ENSCJAG00000014466	KNOWN	protein_coding	TMEM126A	chromosome:C_jacchus3.2.1:11:1:130397257:1	52216183	52225627	R	Transmembrane protein 126A isoform 1 {ECO:0000313|EMBL:JAB03164.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047446}  [Source:UniProtKB/TrEMBL;Acc:F7II27]
ENSCJAG00000014449	KNOWN	protein_coding	CREBZF	chromosome:C_jacchus3.2.1:11:1:130397257:1	52207966	52209048	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026594}  [Source:UniProtKB/TrEMBL;Acc:F7I6Y4]
ENSCJAG00000013143	KNOWN_BY_PROJECTION	protein_coding	CHAT	chromosome:C_jacchus3.2.1:12:1:121768101:1	34052057	34108866	R	choline O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:1912]
ENSCJAG00000014446	KNOWN_BY_PROJECTION	protein_coding	CCDC89	chromosome:C_jacchus3.2.1:11:1:130397257:1	52180532	52182275	D	coiled-coil domain containing 89 [Source:HGNC Symbol;Acc:HGNC:26762]
ENSCJAG00000013171	KNOWN	protein_coding	C10ORF53	chromosome:C_jacchus3.2.1:12:1:121768101:1	34015237	34030519	R	UPF0728 protein C10orf53 isoform b {ECO:0000313|EMBL:JAB11881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024192}  [Source:UniProtKB/TrEMBL;Acc:F7H8W0]
ENSCJAG00000017215	KNOWN	protein_coding	ZNF335	chromosome:C_jacchus3.2.1:5:1:159171411:1	39999823	40026518	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031687}; Zinc finger protein 335 {ECO:0000313|EMBL:JAB33607.1}  [Source:UniProtKB/TrEMBL;Acc:F7I5H1]
ENSCJAG00000016654	KNOWN	protein_coding	GCSH	chromosome:C_jacchus3.2.1:20:1:44557958:1	35208471	35222856	R	Glycine cleavage system H protein, mitochondrial {ECO:0000313|EMBL:JAB07789.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030653}  [Source:UniProtKB/TrEMBL;Acc:F7AP47]
ENSCJAG00000016662	KNOWN_BY_PROJECTION	protein_coding	C16orf46	chromosome:C_jacchus3.2.1:20:1:44557958:1	35182530	35206537	R	chromosome 16 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:26525]
ENSCJAG00000001252	KNOWN	protein_coding	ANXA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	95901563	95920767	R	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:F7IL52]
ENSCJAG00000010803	KNOWN	protein_coding	RBMS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	45339176	45417546	D	RNA-binding motif, single-stranded-interacting protein 2 {ECO:0000313|EMBL:JAB03964.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020037}  [Source:UniProtKB/TrEMBL;Acc:F7DKZ6]
ENSCJAG00000001250	NOVEL	protein_coding	ENSCJAG00000001250	chromosome:C_jacchus3.2.1:1:1:210400635:1	94833355	94834774	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002185}  [Source:UniProtKB/TrEMBL;Acc:F7IBX4]
ENSCJAG00000016670	NOVEL	protein_coding	ENSCJAG00000016670	chromosome:C_jacchus3.2.1:20:1:44557958:1	35163841	35174321	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042317}  [Source:UniProtKB/TrEMBL;Acc:F6WWC3]
ENSCJAG00000016673	KNOWN	protein_coding	CENPN	chromosome:C_jacchus3.2.1:20:1:44557958:1	35134336	35160958	D	Centromere protein N isoform 2 {ECO:0000313|EMBL:JAB11547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030690}  [Source:UniProtKB/TrEMBL;Acc:F6Z6J5]
ENSCJAG00000016683	KNOWN	protein_coding	CMC2	chromosome:C_jacchus3.2.1:20:1:44557958:1	35103117	35134652	R	COX assembly mitochondrial protein 2 homolog {ECO:0000313|EMBL:JAB04322.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030699}  [Source:UniProtKB/TrEMBL;Acc:F6Z6C1]
ENSCJAG00000010870	NOVEL	protein_coding	ENSCJAG00000010870	chromosome:C_jacchus3.2.1:9:1:124281992:1	45313535	45316405	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049258}  [Source:UniProtKB/TrEMBL;Acc:F6UWN8]
ENSCJAG00000008516	KNOWN_BY_PROJECTION	protein_coding	IRX2	chromosome:C_jacchus3.2.1:2:1:204313951:1	201753788	201760367	D	iroquois homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14359]
ENSCJAG00000001216	KNOWN	protein_coding	RORB	chromosome:C_jacchus3.2.1:1:1:210400635:1	94393700	94587298	R	Nuclear receptor ROR-beta {ECO:0000313|EMBL:JAB25042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002179}  [Source:UniProtKB/TrEMBL;Acc:F7IE81]
ENSCJAG00000008547	NOVEL	pseudogene	ENSCJAG00000008547	chromosome:C_jacchus3.2.1:2:1:204313951:1	201331282	201331648	D	<no descrition>
ENSCJAG00000020928	KNOWN	protein_coding	NOL4	chromosome:C_jacchus3.2.1:13:1:117903854:1	71410679	71793574	R	Nucleolar protein 4 isoform 1 {ECO:0000313|EMBL:JAB21795.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038963}  [Source:UniProtKB/TrEMBL;Acc:F7IKT9]
ENSCJAG00000031311	NOVEL	protein_coding	ENSCJAG00000031311	chromosome:C_jacchus3.2.1:2:1:204313951:1	201300639	201314347	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044917}  [Source:UniProtKB/TrEMBL;Acc:F7GVI9]
ENSCJAG00000008552	KNOWN_BY_PROJECTION	protein_coding	IRX1	chromosome:C_jacchus3.2.1:2:1:204313951:1	200830602	200836351	R	iroquois homeobox 1 [Source:HGNC Symbol;Acc:HGNC:14358]
ENSCJAG00000017232	KNOWN_BY_PROJECTION	protein_coding	PCIF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	39987044	39999183	D	PDX1 C-terminal inhibiting factor 1 [Source:HGNC Symbol;Acc:HGNC:16200]
ENSCJAG00000036300	NOVEL	pseudogene	ENSCJAG00000036300	chromosome:C_jacchus3.2.1:2:1:204313951:1	199256718	199256989	R	<no descrition>
ENSCJAG00000003982	KNOWN_BY_PROJECTION	protein_coding	EGF	chromosome:C_jacchus3.2.1:3:1:190850796:1	83648958	83760408	R	epidermal growth factor [Source:HGNC Symbol;Acc:HGNC:3229]
ENSCJAG00000008588	KNOWN_BY_PROJECTION	protein_coding	ADAMTS16	chromosome:C_jacchus3.2.1:2:1:204313951:1	198974548	199159184	R	ADAM metallopeptidase with thrombospondin type 1 motif, 16 [Source:HGNC Symbol;Acc:HGNC:17108]
ENSCJAG00000016685	KNOWN_BY_PROJECTION	protein_coding	CDYL2	chromosome:C_jacchus3.2.1:20:1:44557958:1	34696368	34771238	R	chromodomain protein, Y-like 2 [Source:HGNC Symbol;Acc:HGNC:23030]
ENSCJAG00000022862	NOVEL	pseudogene	ENSCJAG00000022862	chromosome:C_jacchus3.2.1:3:1:190850796:1	83498874	83499963	R	<no descrition>
ENSCJAG00000020922	KNOWN_BY_PROJECTION	protein_coding	ASXL3	chromosome:C_jacchus3.2.1:13:1:117903854:1	71166664	71321028	D	additional sex combs like transcriptional regulator 3 [Source:HGNC Symbol;Acc:HGNC:29357]
ENSCJAG00000016709	KNOWN	protein_coding	DYNLRB2	chromosome:C_jacchus3.2.1:20:1:44557958:1	34638166	34647437	D	Dynein light chain roadblock-type 2 {ECO:0000313|EMBL:JAB04942.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030749}  [Source:UniProtKB/TrEMBL;Acc:F6WSV2]
ENSCJAG00000003975	KNOWN	protein_coding	ELOVL6	chromosome:C_jacchus3.2.1:3:1:190850796:1	83452128	83607972	D	Elongation of very long chain fatty acids protein {ECO:0000256|RuleBase:RU361115}  [Source:UniProtKB/TrEMBL;Acc:F6PTF0]
ENSCJAG00000003974	NOVEL	protein_coding	ENSCJAG00000003974	chromosome:C_jacchus3.2.1:3:1:190850796:1	83404465	83406779	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049881}  [Source:UniProtKB/TrEMBL;Acc:F6YD25]
ENSCJAG00000017262	KNOWN_BY_PROJECTION	protein_coding	PLTP	chromosome:C_jacchus3.2.1:5:1:159171411:1	39948593	39963002	R	phospholipid transfer protein [Source:HGNC Symbol;Acc:HGNC:9093]
ENSCJAG00000033826	NOVEL	protein_coding	ENSCJAG00000033826	chromosome:C_jacchus3.2.1:20:1:44557958:1	34265636	34267052	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006408}  [Source:UniProtKB/TrEMBL;Acc:F7HBH1]
ENSCJAG00000020902	KNOWN_BY_PROJECTION	protein_coding	CCDC178	chromosome:C_jacchus3.2.1:13:1:117903854:1	70520625	70972732	R	coiled-coil domain containing 178 [Source:HGNC Symbol;Acc:HGNC:29588]
ENSCJAG00000018981	KNOWN_BY_PROJECTION	protein_coding	MAF	chromosome:C_jacchus3.2.1:20:1:44557958:1	33664555	33671246	R	v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog [Source:HGNC Symbol;Acc:HGNC:6776]
ENSCJAG00000034988	NOVEL	protein_coding	ENSCJAG00000034988	chromosome:C_jacchus3.2.1:20:1:44557958:1	32864537	32865260	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051379}  [Source:UniProtKB/TrEMBL;Acc:F6WPC9]
ENSCJAG00000017890	KNOWN_BY_PROJECTION	protein_coding	PML	chromosome:C_jacchus3.2.1:10:1:132174527:1	16333832	16387277	D	promyelocytic leukemia [Source:HGNC Symbol;Acc:HGNC:9113]
ENSCJAG00000020900	NOVEL	protein_coding	ENSCJAG00000020900	chromosome:C_jacchus3.2.1:13:1:117903854:1	70355494	70359189	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038880}  [Source:UniProtKB/TrEMBL;Acc:F7HZM4]
ENSCJAG00000014031	NOVEL	pseudogene	ENSCJAG00000014031	chromosome:C_jacchus3.2.1:20:1:44557958:1	32496493	32497493	R	<no descrition>
ENSCJAG00000014027	KNOWN	protein_coding	WWOX	chromosome:C_jacchus3.2.1:20:1:44557958:1	32409439	32457028	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025795}  [Source:UniProtKB/TrEMBL;Acc:F7CSD6]
ENSCJAG00000014032	NOVEL	protein_coding	ENSCJAG00000014032	chromosome:C_jacchus3.2.1:20:1:44557958:1	32100995	32296017	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025803}  [Source:UniProtKB/TrEMBL;Acc:F7BW78]
ENSCJAG00000014039	NOVEL	pseudogene	ENSCJAG00000014039	chromosome:C_jacchus3.2.1:20:1:44557958:1	32076610	32077025	D	<no descrition>
ENSCJAG00000013181	KNOWN	protein_coding	OGDHL	chromosome:C_jacchus3.2.1:12:1:121768101:1	33944893	33973477	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024272}  [Source:UniProtKB/TrEMBL;Acc:F7EXP4]
ENSCJAG00000014359	KNOWN_BY_PROJECTION	protein_coding	SYTL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	52103198	52173024	D	synaptotagmin-like 2 [Source:HGNC Symbol;Acc:HGNC:15585]
ENSCJAG00000014043	KNOWN_BY_PROJECTION	protein_coding	CLEC3A	chromosome:C_jacchus3.2.1:20:1:44557958:1	32006812	32016222	D	C-type lectin domain family 3, member A [Source:HGNC Symbol;Acc:HGNC:2052]
ENSCJAG00000020891	KNOWN_BY_PROJECTION	protein_coding	KLHL14	chromosome:C_jacchus3.2.1:13:1:117903854:1	70259452	70364709	R	kelch-like family member 14 [Source:HGNC Symbol;Acc:HGNC:29266]
ENSCJAG00000020888	NOVEL	protein_coding	ENSCJAG00000020888	chromosome:C_jacchus3.2.1:13:1:117903854:1	70061442	70069596	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049297}  [Source:UniProtKB/TrEMBL;Acc:F6U9R2]
ENSCJAG00000017300	KNOWN_BY_PROJECTION	protein_coding	CTSA	chromosome:C_jacchus3.2.1:5:1:159171411:1	39942319	39948320	D	cathepsin A [Source:HGNC Symbol;Acc:HGNC:9251]
ENSCJAG00000020884	KNOWN	protein_coding	GAREM	chromosome:C_jacchus3.2.1:13:1:117903854:1	69806459	70007648	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038858}  [Source:UniProtKB/TrEMBL;Acc:F7I1X6]
ENSCJAG00000003489	NOVEL	pseudogene	ENSCJAG00000003489	chromosome:C_jacchus3.2.1:3:1:190850796:1	83367921	83369630	R	<no descrition>
ENSCJAG00000013330	NOVEL	pseudogene	ENSCJAG00000013330	chromosome:C_jacchus3.2.1:12:1:121768101:1	33812279	33812701	D	<no descrition>
ENSCJAG00000017320	KNOWN_BY_PROJECTION	protein_coding	NEURL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	39939018	39942266	R	neuralized E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16156]
ENSCJAG00000017323	KNOWN_BY_PROJECTION	protein_coding	SPATA25	chromosome:C_jacchus3.2.1:5:1:159171411:1	39936944	39937966	R	spermatogenesis associated 25 [Source:HGNC Symbol;Acc:HGNC:16158]
ENSCJAG00000017325	KNOWN_BY_PROJECTION	protein_coding	ZSWIM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	39932205	39935239	D	zinc finger, SWIM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:16155]
ENSCJAG00000014046	KNOWN	protein_coding	VAT1L	chromosome:C_jacchus3.2.1:20:1:44557958:1	31786340	31960832	D	Synaptic vesicle membrane protein VAT-1 homolog-like {ECO:0000313|EMBL:JAB13149.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025819}  [Source:UniProtKB/TrEMBL;Acc:F7BEZ9]
ENSCJAG00000017932	KNOWN_BY_PROJECTION	protein_coding	STOML1	chromosome:C_jacchus3.2.1:10:1:132174527:1	16322214	16331151	R	stomatin (EPB72)-like 1 [Source:HGNC Symbol;Acc:HGNC:14560]
ENSCJAG00000020878	KNOWN_BY_PROJECTION	protein_coding	MEP1B	chromosome:C_jacchus3.2.1:13:1:117903854:1	69716826	69746150	D	meprin A, beta [Source:HGNC Symbol;Acc:HGNC:7020]
ENSCJAG00000014049	KNOWN	protein_coding	NUDT7	chromosome:C_jacchus3.2.1:20:1:44557958:1	31722251	31735670	D	Peroxisomal coenzyme A diphosphatase NUDT7 isoform 1 {ECO:0000313|EMBL:JAB01653.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025824}  [Source:UniProtKB/TrEMBL;Acc:F7BEK5]
ENSCJAG00000017328	KNOWN	protein_coding	ZSWIM3	chromosome:C_jacchus3.2.1:5:1:159171411:1	39912785	39929956	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031895}; Zinc finger SWIM domain-containing protein 3 {ECO:0000313|EMBL:JAB07093.1}  [Source:UniProtKB/TrEMBL;Acc:F7I5B5]
ENSCJAG00000017332	KNOWN	protein_coding	ACOT8	chromosome:C_jacchus3.2.1:5:1:159171411:1	39895426	39912562	R	Acyl-coenzyme A thioesterase 8 {ECO:0000313|EMBL:JAB05424.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031911}  [Source:UniProtKB/TrEMBL;Acc:F7I0J8]
ENSCJAG00000010875	KNOWN_BY_PROJECTION	protein_coding	GLS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	45285512	45303774	R	glutaminase 2 (liver, mitochondrial) [Source:HGNC Symbol;Acc:HGNC:29570]
ENSCJAG00000020875	KNOWN	protein_coding	RNF138	chromosome:C_jacchus3.2.1:13:1:117903854:1	69618888	69662309	D	E3 ubiquitin-protein ligase RNF138 isoform 1 {ECO:0000313|EMBL:JAB10336.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038840}  [Source:UniProtKB/TrEMBL;Acc:F7I205]
ENSCJAG00000020872	KNOWN_BY_PROJECTION	protein_coding	RNF125	chromosome:C_jacchus3.2.1:13:1:117903854:1	69530371	69582060	D	ring finger protein 125, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:21150]
ENSCJAG00000008637	KNOWN_BY_PROJECTION	protein_coding	ICE1	chromosome:C_jacchus3.2.1:2:1:204313951:1	198805749	198873547	R	interactor of little elongation complex ELL subunit 1 [Source:HGNC Symbol;Acc:HGNC:29154]
ENSCJAG00000017344	KNOWN	protein_coding	SNX21	chromosome:C_jacchus3.2.1:5:1:159171411:1	39888241	39896986	D	Sorting nexin-21 isoform a {ECO:0000313|EMBL:JAB05422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031946}  [Source:UniProtKB/TrEMBL;Acc:F7HVT2]
ENSCJAG00000010962	KNOWN	protein_coding	SPRYD4	chromosome:C_jacchus3.2.1:9:1:124281992:1	45283104	45285453	D	SPRY domain-containing protein 4 {ECO:0000313|EMBL:JAB01959.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009527}  [Source:UniProtKB/TrEMBL;Acc:F7D4Z8]
ENSCJAG00000017357	KNOWN	protein_coding	TNNC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	39876463	39880762	R	Troponin C, skeletal muscle {ECO:0000313|EMBL:JAB24736.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031973}  [Source:UniProtKB/TrEMBL;Acc:F7HKV1]
ENSCJAG00000010971	KNOWN_BY_PROJECTION	protein_coding	MIP	chromosome:C_jacchus3.2.1:9:1:124281992:1	45261068	45266423	R	major intrinsic protein of lens fiber [Source:HGNC Symbol;Acc:HGNC:7103]
ENSCJAG00000017366	KNOWN_BY_PROJECTION	protein_coding	DNTTIP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	39845372	39863862	D	deoxynucleotidyltransferase, terminal, interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16160]
ENSCJAG00000017949	KNOWN	protein_coding	LOXL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	16259396	16285915	D	Lysyl oxidase homolog 1 preproprotein {ECO:0000313|EMBL:JAB11061.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033171}  [Source:UniProtKB/TrEMBL;Acc:F6S0D4]
ENSCJAG00000014358	NOVEL	pseudogene	ENSCJAG00000014358	chromosome:C_jacchus3.2.1:11:1:130397257:1	52000646	52001469	R	<no descrition>
ENSCJAG00000020835	KNOWN_BY_PROJECTION	protein_coding	TRAPPC8	chromosome:C_jacchus3.2.1:13:1:117903854:1	69369798	69490282	R	trafficking protein particle complex 8 [Source:HGNC Symbol;Acc:HGNC:29169]
ENSCJAG00000008674	KNOWN	protein_coding	MED10	chromosome:C_jacchus3.2.1:2:1:204313951:1	197861643	197868201	D	Mediator of RNA polymerase II transcription subunit 10 {ECO:0000313|EMBL:JAB03880.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015963}  [Source:UniProtKB/TrEMBL;Acc:F7DB49]
ENSCJAG00000008686	KNOWN_BY_PROJECTION	protein_coding	UBE2QL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	197735096	197781653	R	ubiquitin-conjugating enzyme E2Q family-like 1 [Source:HGNC Symbol;Acc:HGNC:37269]
ENSCJAG00000003856	KNOWN_BY_PROJECTION	protein_coding	ENPEP	chromosome:C_jacchus3.2.1:3:1:190850796:1	83132221	83220377	R	glutamyl aminopeptidase (aminopeptidase A) [Source:HGNC Symbol;Acc:HGNC:3355]
ENSCJAG00000014053	KNOWN_BY_PROJECTION	protein_coding	ADAMTS18	chromosome:C_jacchus3.2.1:20:1:44557958:1	31248331	31404960	R	ADAM metallopeptidase with thrombospondin type 1 motif, 18 [Source:HGNC Symbol;Acc:HGNC:17110]
ENSCJAG00000008689	KNOWN	protein_coding	NSUN2	chromosome:C_jacchus3.2.1:2:1:204313951:1	197585770	197617860	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016019}; tRNA (Cytosine(34)-C(5))-methyltransferase isoform 1 {ECO:0000313|EMBL:JAB04366.1}  [Source:UniProtKB/TrEMBL;Acc:F6Y709]
ENSCJAG00000001156	KNOWN_BY_PROJECTION	protein_coding	TRPM6	chromosome:C_jacchus3.2.1:1:1:210400635:1	94224419	94345005	D	transient receptor potential cation channel, subfamily M, member 6 [Source:HGNC Symbol;Acc:HGNC:17995]
ENSCJAG00000020834	NOVEL	pseudogene	ENSCJAG00000020834	chromosome:C_jacchus3.2.1:13:1:117903854:1	69284448	69284901	D	<no descrition>
ENSCJAG00000008724	KNOWN	protein_coding	SRD5A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	197557077	197587772	R	3-oxo-5-alpha-steroid 4-dehydrogenase 1 {ECO:0000313|EMBL:JAB09917.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048126}  [Source:UniProtKB/TrEMBL;Acc:F7HE62]
ENSCJAG00000003830	KNOWN	protein_coding	PITX2	chromosome:C_jacchus3.2.1:3:1:190850796:1	83055642	83080577	D	Pituitary homeobox 2 isoform a {ECO:0000313|EMBL:JAB06527.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007002}  [Source:UniProtKB/TrEMBL;Acc:F6Q5G1]
ENSCJAG00000001150	KNOWN_BY_PROJECTION	protein_coding	C9orf40	chromosome:C_jacchus3.2.1:1:1:210400635:1	94134299	94140363	D	chromosome 9 open reading frame 40 [Source:HGNC Symbol;Acc:HGNC:23433]
ENSCJAG00000020816	KNOWN	protein_coding	B4GALT6	chromosome:C_jacchus3.2.1:13:1:117903854:1	69208469	69265798	R	Beta-1,4-galactosyltransferase 6 {ECO:0000313|EMBL:JAB08228.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038757}  [Source:UniProtKB/TrEMBL;Acc:F7IDV1]
ENSCJAG00000001149	KNOWN_BY_PROJECTION	protein_coding	DYNLL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	94118452	94134702	R	dynein, light chain, LC8-type 2 [Source:HGNC Symbol;Acc:HGNC:24596]
ENSCJAG00000003822	NOVEL	pseudogene	ENSCJAG00000003822	chromosome:C_jacchus3.2.1:3:1:190850796:1	81563156	81564143	R	<no descrition>
ENSCJAG00000003821	KNOWN	protein_coding	C4ORF32	chromosome:C_jacchus3.2.1:3:1:190850796:1	81482572	81523393	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006927}; Uncharacterized protein C4orf32 {ECO:0000313|EMBL:JAB08287.1}  [Source:UniProtKB/TrEMBL;Acc:F7H5J5]
ENSCJAG00000017367	KNOWN	protein_coding	WFDC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	39827589	39845275	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031986}  [Source:UniProtKB/TrEMBL;Acc:F7IRD2]
ENSCJAG00000014339	KNOWN_BY_PROJECTION	protein_coding	CCDC83	chromosome:C_jacchus3.2.1:11:1:130397257:1	51941137	52013914	R	coiled-coil domain containing 83 [Source:HGNC Symbol;Acc:HGNC:28535]
ENSCJAG00000003799	KNOWN	protein_coding	AP1AR	chromosome:C_jacchus3.2.1:3:1:190850796:1	81403768	81442232	R	AP-1 complex-associated regulatory protein isoform a {ECO:0000313|EMBL:JAB07232.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006925}  [Source:UniProtKB/TrEMBL;Acc:F7H5J9]
ENSCJAG00000014329	NOVEL	protein_coding	ENSCJAG00000014329	chromosome:C_jacchus3.2.1:11:1:130397257:1	51917670	51918358	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026357}  [Source:UniProtKB/TrEMBL;Acc:F7I9F1]
ENSCJAG00000033247	NOVEL	pseudogene	ENSCJAG00000033247	chromosome:C_jacchus3.2.1:5:1:159171411:1	39819383	39819822	D	<no descrition>
ENSCJAG00000020808	KNOWN	protein_coding	TTR	chromosome:C_jacchus3.2.1:13:1:117903854:1	69175514	69182835	D	Callithrix jacchus transthyretin (TTR), mRNA. [Source:RefSeq mRNA;Acc:NM_001267750]
ENSCJAG00000017371	KNOWN_BY_PROJECTION	protein_coding	SPINT4	chromosome:C_jacchus3.2.1:5:1:159171411:1	39799721	39802988	D	serine peptidase inhibitor, Kunitz type 4 [Source:HGNC Symbol;Acc:HGNC:16130]
ENSCJAG00000003796	KNOWN	protein_coding	TIFA	chromosome:C_jacchus3.2.1:3:1:190850796:1	81385985	81396558	D	TRAF-interacting protein with FHA domain-containing protein A {ECO:0000313|EMBL:JAB09766.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047435}  [Source:UniProtKB/TrEMBL;Acc:F7II62]
ENSCJAG00000014101	KNOWN_BY_PROJECTION	protein_coding	SYCE1L	chromosome:C_jacchus3.2.1:20:1:44557958:1	31179447	31192413	D	synaptonemal complex central element protein 1-like [Source:HGNC Symbol;Acc:HGNC:37236]
ENSCJAG00000002368	KNOWN	protein_coding	NELFE	chromosome:C_jacchus3.2.1:4:1:171630274:1	32545935	32552669	R	Negative elongation factor E {ECO:0000313|EMBL:JAB14278.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004354}  [Source:UniProtKB/TrEMBL;Acc:F7C589]
ENSCJAG00000003795	NOVEL	pseudogene	ENSCJAG00000003795	chromosome:C_jacchus3.2.1:3:1:190850796:1	81284689	81286164	D	<no descrition>
ENSCJAG00000001131	KNOWN	protein_coding	C9ORF41	chromosome:C_jacchus3.2.1:1:1:210400635:1	94061563	94106193	D	UPF0586 protein C9orf41 {ECO:0000313|EMBL:JAB36226.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001959}  [Source:UniProtKB/TrEMBL;Acc:F6X2Z7]
ENSCJAG00000017373	KNOWN_BY_PROJECTION	protein_coding	WFDC10B	chromosome:C_jacchus3.2.1:5:1:159171411:1	39777257	39778750	R	WAP four-disulfide core domain 10B [Source:HGNC Symbol;Acc:HGNC:20479]
ENSCJAG00000017378	KNOWN_BY_PROJECTION	protein_coding	WFDC11	chromosome:C_jacchus3.2.1:5:1:159171411:1	39770601	39772034	R	WAP four-disulfide core domain 11 [Source:HGNC Symbol;Acc:HGNC:20478]
ENSCJAG00000017381	KNOWN_BY_PROJECTION	protein_coding	WFDC10A	chromosome:C_jacchus3.2.1:5:1:159171411:1	39764858	39766288	D	WAP four-disulfide core domain 10A [Source:HGNC Symbol;Acc:HGNC:16139]
ENSCJAG00000017387	KNOWN_BY_PROJECTION	protein_coding	WFDC9	chromosome:C_jacchus3.2.1:5:1:159171411:1	39752657	39757596	R	WAP four-disulfide core domain 9 [Source:HGNC Symbol;Acc:HGNC:20380]
ENSCJAG00000012789	NOVEL	protein_coding	ENSCJAG00000012789	chromosome:C_jacchus3.2.1:1:1:210400635:1	93764740	93768740	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023434}  [Source:UniProtKB/TrEMBL;Acc:F7ISH2]
ENSCJAG00000012806	NOVEL	protein_coding	ENSCJAG00000012806	chromosome:C_jacchus3.2.1:1:1:210400635:1	93727168	93728349	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023459}  [Source:UniProtKB/TrEMBL;Acc:F7IMU4]
ENSCJAG00000014113	KNOWN	protein_coding	MON1B	chromosome:C_jacchus3.2.1:20:1:44557958:1	31170270	31178900	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025949}; Vacuolar fusion protein MON1 homolog B {ECO:0000313|EMBL:JAB08327.1}  [Source:UniProtKB/TrEMBL;Acc:F6VWD1]
ENSCJAG00000020804	KNOWN_BY_PROJECTION	protein_coding	DSG2	chromosome:C_jacchus3.2.1:13:1:117903854:1	69060100	69128763	D	desmoglein 2 [Source:HGNC Symbol;Acc:HGNC:3049]
ENSCJAG00000017392	NOVEL	protein_coding	ENSCJAG00000017392	chromosome:C_jacchus3.2.1:5:1:159171411:1	39698672	39714585	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032048}  [Source:UniProtKB/TrEMBL;Acc:F7HHM8]
ENSCJAG00000012794	KNOWN	protein_coding	NMRK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	93715077	93747793	D	Nicotinamide riboside kinase 1 isoform 1 {ECO:0000313|EMBL:JAB10921.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023450}  [Source:UniProtKB/TrEMBL;Acc:F7IMV7]
ENSCJAG00000017400	KNOWN_BY_PROJECTION	protein_coding	SPINT3	chromosome:C_jacchus3.2.1:5:1:159171411:1	39674823	39678026	R	serine peptidase inhibitor, Kunitz type, 3 [Source:HGNC Symbol;Acc:HGNC:11248]
ENSCJAG00000020796	KNOWN_BY_PROJECTION	protein_coding	DSG3	chromosome:C_jacchus3.2.1:13:1:117903854:1	69029505	69058806	D	desmoglein 3 [Source:HGNC Symbol;Acc:HGNC:3050]
ENSCJAG00000008742	KNOWN_BY_PROJECTION	protein_coding	PAPD7	chromosome:C_jacchus3.2.1:2:1:204313951:1	197465057	197485515	R	PAP associated domain containing 7 [Source:HGNC Symbol;Acc:HGNC:16705]
ENSCJAG00000017405	KNOWN_BY_PROJECTION	protein_coding	WFDC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	39644626	39649837	D	WAP four-disulfide core domain 2 [Source:HGNC Symbol;Acc:HGNC:15939]
ENSCJAG00000014262	KNOWN	protein_coding	PICALM	chromosome:C_jacchus3.2.1:11:1:130397257:1	51776790	51884144	D	Phosphatidylinositol-binding clathrin assembly protein isoform 2 {ECO:0000313|EMBL:JAB08776.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026322}  [Source:UniProtKB/TrEMBL;Acc:F7IE54]
ENSCJAG00000020783	KNOWN_BY_PROJECTION	protein_coding	DSG4	chromosome:C_jacchus3.2.1:13:1:117903854:1	68958404	69002945	D	desmoglein 4 [Source:HGNC Symbol;Acc:HGNC:21307]
ENSCJAG00000017969	KNOWN_BY_PROJECTION	protein_coding	TBC1D21	chromosome:C_jacchus3.2.1:10:1:132174527:1	16203936	16221074	D	TBC1 domain family, member 21 [Source:HGNC Symbol;Acc:HGNC:28536]
ENSCJAG00000013224	KNOWN	protein_coding	PARG	chromosome:C_jacchus3.2.1:12:1:121768101:1	33759235	33879465	D	Poly(ADP-ribose) glycohydrolase {ECO:0000313|EMBL:JAB04304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024474}  [Source:UniProtKB/TrEMBL;Acc:F7DP34]
ENSCJAG00000020778	KNOWN_BY_PROJECTION	protein_coding	DSG1	chromosome:C_jacchus3.2.1:13:1:117903854:1	68904382	68936930	D	desmoglein 1 [Source:HGNC Symbol;Acc:HGNC:3048]
ENSCJAG00000017985	KNOWN	protein_coding	C15ORF59	chromosome:C_jacchus3.2.1:10:1:132174527:1	16062127	16073711	R	UPF0583 protein C15orf59 {ECO:0000313|EMBL:JAB02642.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033212}  [Source:UniProtKB/TrEMBL;Acc:F6RCI1]
ENSCJAG00000020776	KNOWN_BY_PROJECTION	protein_coding	DSC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	68731292	68763820	R	desmocollin 1 [Source:HGNC Symbol;Acc:HGNC:3035]
ENSCJAG00000014258	NOVEL	protein_coding	ENSCJAG00000014258	chromosome:C_jacchus3.2.1:11:1:130397257:1	51583570	51585257	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026217}  [Source:UniProtKB/TrEMBL;Acc:F7HV96]
ENSCJAG00000014128	KNOWN	protein_coding	CNTNAP4	chromosome:C_jacchus3.2.1:20:1:44557958:1	30173223	30463853	D	Contactin-associated protein-like 4 isoform 1 {ECO:0000313|EMBL:JAB26568.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026097}  [Source:UniProtKB/TrEMBL;Acc:F7INS1]
ENSCJAG00000017996	KNOWN_BY_PROJECTION	protein_coding	CD276	chromosome:C_jacchus3.2.1:10:1:132174527:1	15898866	16036078	D	CD276 molecule [Source:HGNC Symbol;Acc:HGNC:19137]
ENSCJAG00000012808	KNOWN	protein_coding	OSTF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	93653777	93714738	R	Osteoclast-stimulating factor 1 {ECO:0000313|EMBL:JAB07579.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049567}  [Source:UniProtKB/TrEMBL;Acc:F6VEN3]
ENSCJAG00000035409	NOVEL	protein_coding	ENSCJAG00000035409	chromosome:C_jacchus3.2.1:1:1:210400635:1	93621935	93623477	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049856}  [Source:UniProtKB/TrEMBL;Acc:F6YV36]
ENSCJAG00000020767	KNOWN_BY_PROJECTION	protein_coding	DSC2	chromosome:C_jacchus3.2.1:13:1:117903854:1	68659161	68697474	R	desmocollin 2 [Source:HGNC Symbol;Acc:HGNC:3036]
ENSCJAG00000012836	NOVEL	protein_coding	ENSCJAG00000012836	chromosome:C_jacchus3.2.1:1:1:210400635:1	93511440	93511918	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023504}  [Source:UniProtKB/TrEMBL;Acc:F7IB38]
ENSCJAG00000012837	NOVEL	protein_coding	ENSCJAG00000012837	chromosome:C_jacchus3.2.1:1:1:210400635:1	93370555	93371270	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023511}  [Source:UniProtKB/TrEMBL;Acc:F7IB18]
ENSCJAG00000008816	KNOWN_BY_PROJECTION	protein_coding	ADCY2	chromosome:C_jacchus3.2.1:2:1:204313951:1	196311184	196785465	R	adenylate cyclase 2 (brain) [Source:HGNC Symbol;Acc:HGNC:233]
ENSCJAG00000014209	KNOWN	protein_coding	EED	chromosome:C_jacchus3.2.1:11:1:130397257:1	51565997	51604646	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026171}  [Source:UniProtKB/TrEMBL;Acc:F7I4V1]
ENSCJAG00000008913	KNOWN_BY_PROJECTION	protein_coding	C5orf49	chromosome:C_jacchus3.2.1:2:1:204313951:1	196274110	196306943	D	chromosome 5 open reading frame 49 [Source:HGNC Symbol;Acc:HGNC:27028]
ENSCJAG00000032790	NOVEL	protein_coding	ENSCJAG00000032790	chromosome:C_jacchus3.2.1:20:1:44557958:1	29623009	29627142	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044364}  [Source:UniProtKB/TrEMBL;Acc:F7FJ50]
ENSCJAG00000020758	KNOWN_BY_PROJECTION	protein_coding	DSC3	chromosome:C_jacchus3.2.1:13:1:117903854:1	68588977	68636897	R	desmocollin 3 [Source:HGNC Symbol;Acc:HGNC:3037]
ENSCJAG00000008921	KNOWN_BY_PROJECTION	protein_coding	FASTKD3	chromosome:C_jacchus3.2.1:2:1:204313951:1	196252113	196261104	D	FAST kinase domains 3 [Source:HGNC Symbol;Acc:HGNC:28758]
ENSCJAG00000010984	KNOWN_BY_PROJECTION	protein_coding	TIMELESS	chromosome:C_jacchus3.2.1:9:1:124281992:1	45224740	45260381	R	timeless circadian clock [Source:HGNC Symbol;Acc:HGNC:11813]
ENSCJAG00000008934	KNOWN_BY_PROJECTION	protein_coding	MTRR	chromosome:C_jacchus3.2.1:2:1:204313951:1	196221287	196249825	R	5-methyltetrahydrofolate-homocysteine methyltransferase reductase [Source:HGNC Symbol;Acc:HGNC:7473]
ENSCJAG00000014196	KNOWN	protein_coding	TERF2IP	chromosome:C_jacchus3.2.1:20:1:44557958:1	29604077	29613795	D	Telomeric repeat-binding factor 2-interacting protein 1 {ECO:0000313|EMBL:JAB03361.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026128}  [Source:UniProtKB/TrEMBL;Acc:F7IE94]
ENSCJAG00000020748	KNOWN	protein_coding	CDH2	chromosome:C_jacchus3.2.1:13:1:117903854:1	65594234	65833360	R	Cadherin-2  [Source:UniProtKB/Swiss-Prot;Acc:B0KW95]
ENSCJAG00000014213	KNOWN	protein_coding	KARS	chromosome:C_jacchus3.2.1:20:1:44557958:1	29585581	29604018	R	Lysine--tRNA ligase {ECO:0000256|RuleBase:RU003748}  [Source:UniProtKB/TrEMBL;Acc:F7I4R7]
ENSCJAG00000011065	KNOWN_BY_PROJECTION	protein_coding	APOF	chromosome:C_jacchus3.2.1:9:1:124281992:1	45192946	45194509	R	apolipoprotein F [Source:HGNC Symbol;Acc:HGNC:615]
ENSCJAG00000012841	KNOWN	protein_coding	PCSK5	chromosome:C_jacchus3.2.1:1:1:210400635:1	92524771	92837251	R	Proprotein convertase subtilisin/kexin type 5 isoform 2 preproprotein {ECO:0000313|EMBL:JAB05373.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023611}  [Source:UniProtKB/TrEMBL;Acc:F7D643]
ENSCJAG00000014241	KNOWN_BY_PROJECTION	protein_coding	ADAT1	chromosome:C_jacchus3.2.1:20:1:44557958:1	29551124	29578648	R	adenosine deaminase, tRNA-specific 1 [Source:HGNC Symbol;Acc:HGNC:228]
ENSCJAG00000018009	KNOWN	protein_coding	NPTN	chromosome:C_jacchus3.2.1:10:1:132174527:1	15890313	15962228	R	Neuroplastin isoform a {ECO:0000313|EMBL:JAB05753.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033310}  [Source:UniProtKB/TrEMBL;Acc:F6PJT9]
ENSCJAG00000003780	KNOWN_BY_PROJECTION	protein_coding	ALPK1	chromosome:C_jacchus3.2.1:3:1:190850796:1	81185378	81375766	R	alpha-kinase 1 [Source:HGNC Symbol;Acc:HGNC:20917]
ENSCJAG00000014253	NOVEL	protein_coding	ENSCJAG00000014253	chromosome:C_jacchus3.2.1:20:1:44557958:1	29515914	29527975	D	<no descrition>
ENSCJAG00000033306	NOVEL	protein_coding	ENSCJAG00000033306	chromosome:C_jacchus3.2.1:13:1:117903854:1	64594563	64595032	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048548}  [Source:UniProtKB/TrEMBL;Acc:F7F9I9]
ENSCJAG00000014260	NOVEL	protein_coding	ENSCJAG00000014260	chromosome:C_jacchus3.2.1:20:1:44557958:1	29481939	29507776	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026234}  [Source:UniProtKB/TrEMBL;Acc:F7HK26]
ENSCJAG00000017991	KNOWN_BY_PROJECTION	protein_coding	REC114	chromosome:C_jacchus3.2.1:10:1:132174527:1	15785101	15890320	D	REC114 meiotic recombination protein [Source:HGNC Symbol;Acc:HGNC:25065]
ENSCJAG00000012092	KNOWN	protein_coding	CCDC81	chromosome:C_jacchus3.2.1:11:1:130397257:1	51411959	51463979	R	Coiled-coil domain-containing protein 81 isoform 1 {ECO:0000313|EMBL:JAB20456.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022249}  [Source:UniProtKB/TrEMBL;Acc:F7CPF8]
ENSCJAG00000020745	KNOWN_BY_PROJECTION	protein_coding	CHST9	chromosome:C_jacchus3.2.1:13:1:117903854:1	64538933	64844940	R	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 [Source:HGNC Symbol;Acc:HGNC:19898]
ENSCJAG00000014271	NOVEL	pseudogene	ENSCJAG00000014271	chromosome:C_jacchus3.2.1:20:1:44557958:1	29473469	29475061	R	<no descrition>
ENSCJAG00000022294	NOVEL	pseudogene	ENSCJAG00000022294	chromosome:C_jacchus3.2.1:10:1:132174527:1	15778657	15779782	R	<no descrition>
ENSCJAG00000014281	KNOWN	protein_coding	CHST5	chromosome:C_jacchus3.2.1:20:1:44557958:1	29404878	29407799	R	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F7ITB0]
ENSCJAG00000014275	KNOWN_BY_PROJECTION	protein_coding	TMEM170A	chromosome:C_jacchus3.2.1:20:1:44557958:1	29362646	29446950	R	transmembrane protein 170A [Source:HGNC Symbol;Acc:HGNC:29577]
ENSCJAG00000018037	KNOWN_BY_PROJECTION	protein_coding	HCN4	chromosome:C_jacchus3.2.1:10:1:132174527:1	15664746	15698250	R	hyperpolarization activated cyclic nucleotide gated potassium channel 4 [Source:HGNC Symbol;Acc:HGNC:16882]
ENSCJAG00000011073	KNOWN	protein_coding	WIPF2	chromosome:C_jacchus3.2.1:9:1:124281992:1	45159140	45184091	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020457}; WAS/WASL-interacting protein family member 2 {ECO:0000313|EMBL:JAB10696.1}  [Source:UniProtKB/TrEMBL;Acc:F7E084]
ENSCJAG00000014283	KNOWN	protein_coding	CFDP1	chromosome:C_jacchus3.2.1:20:1:44557958:1	29215539	29352097	R	Craniofacial development protein 1 {ECO:0000313|EMBL:JAB08045.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026268}  [Source:UniProtKB/TrEMBL;Acc:F7IQY3]
ENSCJAG00000020734	KNOWN	protein_coding	AQP4	chromosome:C_jacchus3.2.1:13:1:117903854:1	64451571	64466505	R	Aquaporin-4 isoform a {ECO:0000313|EMBL:JAB21198.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023226}  [Source:UniProtKB/TrEMBL;Acc:F7IQC1]
ENSCJAG00000003775	KNOWN	protein_coding	ENSCJAG00000003775	chromosome:C_jacchus3.2.1:3:1:190850796:1	81177016	81179711	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006828}  [Source:UniProtKB/TrEMBL;Acc:F7DGG6]
ENSCJAG00000003772	KNOWN_BY_PROJECTION	protein_coding	NEUROG2	chromosome:C_jacchus3.2.1:3:1:190850796:1	81123578	81126525	D	neurogenin 2 [Source:HGNC Symbol;Acc:HGNC:13805]
ENSCJAG00000020733	NOVEL	protein_coding	ENSCJAG00000020733	chromosome:C_jacchus3.2.1:13:1:117903854:1	64066944	64067620	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038558}  [Source:UniProtKB/TrEMBL;Acc:F7I996]
ENSCJAG00000008962	KNOWN_BY_PROJECTION	protein_coding	SEMA5A	chromosome:C_jacchus3.2.1:2:1:204313951:1	194861991	195058453	D	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [Source:HGNC Symbol;Acc:HGNC:10736]
ENSCJAG00000020728	KNOWN_BY_PROJECTION	protein_coding	KCTD1	chromosome:C_jacchus3.2.1:13:1:117903854:1	64020275	64207765	R	potassium channel tetramerization domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18249]
ENSCJAG00000008738	KNOWN_BY_PROJECTION	protein_coding	PRUNE2	chromosome:C_jacchus3.2.1:1:1:210400635:1	91911347	92212418	D	prune homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:25209]
ENSCJAG00000020727	NOVEL	pseudogene	ENSCJAG00000020727	chromosome:C_jacchus3.2.1:13:1:117903854:1	63793813	63794413	R	<no descrition>
ENSCJAG00000008971	KNOWN_BY_PROJECTION	protein_coding	FAM173B	chromosome:C_jacchus3.2.1:2:1:204313951:1	193735992	193759048	D	family with sequence similarity 173, member B [Source:HGNC Symbol;Acc:HGNC:27029]
ENSCJAG00000013336	KNOWN	protein_coding	TIMM23	chromosome:C_jacchus3.2.1:12:1:121768101:1	33732238	33759216	R	Mitochondrial import inner membrane translocase subunit Tim23 {ECO:0000313|EMBL:JAB11390.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024514}  [Source:UniProtKB/TrEMBL;Acc:F7GXV5]
ENSCJAG00000020711	KNOWN_BY_PROJECTION	protein_coding	TAF4B	chromosome:C_jacchus3.2.1:13:1:117903854:1	63777120	63951403	D	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa [Source:HGNC Symbol;Acc:HGNC:11538]
ENSCJAG00000008722	KNOWN_BY_PROJECTION	protein_coding	FOXB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	91758690	91759967	R	forkhead box B2 [Source:HGNC Symbol;Acc:HGNC:23315]
ENSCJAG00000008721	NOVEL	protein_coding	ENSCJAG00000008721	chromosome:C_jacchus3.2.1:1:1:210400635:1	91741317	91745192	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016021}  [Source:UniProtKB/TrEMBL;Acc:F6Y6J9]
ENSCJAG00000011101	NOVEL	protein_coding	ENSCJAG00000011101	chromosome:C_jacchus3.2.1:9:1:124281992:1	45122972	45130984	R	Signal transducer and activator of transcription {ECO:0000256|RuleBase:RU046415}  [Source:UniProtKB/TrEMBL;Acc:F7H6K3]
ENSCJAG00000008720	NOVEL	pseudogene	ENSCJAG00000008720	chromosome:C_jacchus3.2.1:1:1:210400635:1	91720203	91720468	D	<no descrition>
ENSCJAG00000011123	KNOWN_BY_PROJECTION	protein_coding	IL23A	chromosome:C_jacchus3.2.1:9:1:124281992:1	45118431	45119966	D	interleukin 23, alpha subunit p19 [Source:HGNC Symbol;Acc:HGNC:15488]
ENSCJAG00000020707	KNOWN_BY_PROJECTION	protein_coding	PSMA8	chromosome:C_jacchus3.2.1:13:1:117903854:1	63680282	63918485	D	proteasome (prosome, macropain) subunit, alpha type, 8 [Source:HGNC Symbol;Acc:HGNC:22985]
ENSCJAG00000000649	KNOWN	protein_coding	ME3	chromosome:C_jacchus3.2.1:11:1:130397257:1	51163907	51396931	D	Malic enzyme {ECO:0000256|RuleBase:RU003426}  [Source:UniProtKB/TrEMBL;Acc:F6W3U7]
ENSCJAG00000013352	NOVEL	protein_coding	ENSCJAG00000013352	chromosome:C_jacchus3.2.1:12:1:121768101:1	33710389	33730101	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024557}  [Source:UniProtKB/TrEMBL;Acc:F7GDC4]
ENSCJAG00000008719	NOVEL	pseudogene	ENSCJAG00000008719	chromosome:C_jacchus3.2.1:1:1:210400635:1	91686470	91687927	R	<no descrition>
ENSCJAG00000000652	NOVEL	pseudogene	ENSCJAG00000000652	chromosome:C_jacchus3.2.1:11:1:130397257:1	50998200	50999709	R	<no descrition>
ENSCJAG00000018044	KNOWN_BY_PROJECTION	protein_coding	NEO1	chromosome:C_jacchus3.2.1:10:1:132174527:1	15397646	15643442	D	neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
ENSCJAG00000008710	NOVEL	protein_coding	ENSCJAG00000008710	chromosome:C_jacchus3.2.1:1:1:210400635:1	91674025	91675376	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052459}  [Source:UniProtKB/TrEMBL;Acc:F7I2G8]
ENSCJAG00000034476	KNOWN_BY_PROJECTION	protein_coding	FAM220A	chromosome:C_jacchus3.2.1:11:1:130397257:1	50953605	50954371	D	family with sequence similarity 220, member A [Source:HGNC Symbol;Acc:HGNC:22422]
ENSCJAG00000013377	KNOWN	protein_coding	MSMB	chromosome:C_jacchus3.2.1:12:1:121768101:1	33534426	33703899	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048280}  [Source:UniProtKB/TrEMBL;Acc:F7DQ50]
ENSCJAG00000000657	KNOWN	protein_coding	FZD4	chromosome:C_jacchus3.2.1:11:1:130397257:1	50882565	50889410	D	Frizzled-4 {ECO:0000313|EMBL:JAB07146.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001124}  [Source:UniProtKB/TrEMBL;Acc:F6W3M0]
ENSCJAG00000035249	NOVEL	protein_coding	ENSCJAG00000035249	chromosome:C_jacchus3.2.1:12:1:121768101:1	33498401	33499167	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052331}  [Source:UniProtKB/TrEMBL;Acc:F7HKF2]
ENSCJAG00000000660	NOVEL	protein_coding	ENSCJAG00000000660	chromosome:C_jacchus3.2.1:11:1:130397257:1	50867774	50868612	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001126}  [Source:UniProtKB/TrEMBL;Acc:F6W3K4]
ENSCJAG00000031567	NOVEL	protein_coding	ENSCJAG00000031567	chromosome:C_jacchus3.2.1:11:1:130397257:1	50701309	50702233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049529}  [Source:UniProtKB/TrEMBL;Acc:F6WJ95]
ENSCJAG00000000661	KNOWN	protein_coding	TMEM135	chromosome:C_jacchus3.2.1:11:1:130397257:1	50533162	50805682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051775}  [Source:UniProtKB/TrEMBL;Acc:F7AZC1]
ENSCJAG00000017414	KNOWN	protein_coding	PIGT	chromosome:C_jacchus3.2.1:5:1:159171411:1	39579613	39589583	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050871}  [Source:UniProtKB/TrEMBL;Acc:F7F8Y7]
ENSCJAG00000020695	KNOWN	protein_coding	SS18	chromosome:C_jacchus3.2.1:13:1:117903854:1	63577492	63644427	R	Protein SSXT isoform 1 {ECO:0000313|EMBL:JAB02577.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029928}  [Source:UniProtKB/TrEMBL;Acc:F7I9R5]
ENSCJAG00000003740	KNOWN_BY_PROJECTION	protein_coding	ZGRF1	chromosome:C_jacchus3.2.1:3:1:190850796:1	81045509	81097588	D	zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
ENSCJAG00000000671	KNOWN	protein_coding	RAB38	chromosome:C_jacchus3.2.1:11:1:130397257:1	49677283	49744518	D	Ras-related protein Rab-38 {ECO:0000313|EMBL:JAB20184.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050364}  [Source:UniProtKB/TrEMBL;Acc:F7FQR9]
ENSCJAG00000018154	NOVEL	protein_coding	ENSCJAG00000018154	chromosome:C_jacchus3.2.1:10:1:132174527:1	15241087	15242215	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033578}  [Source:UniProtKB/TrEMBL;Acc:F6STJ0]
ENSCJAG00000003724	NOVEL	protein_coding	ENSCJAG00000003724	chromosome:C_jacchus3.2.1:3:1:190850796:1	80995152	81043513	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006771}  [Source:UniProtKB/TrEMBL;Acc:F7EP85]
ENSCJAG00000008658	NOVEL	protein_coding	ENSCJAG00000008658	chromosome:C_jacchus3.2.1:1:1:210400635:1	91538795	91591173	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019232}  [Source:UniProtKB/TrEMBL;Acc:F6U2A6]
ENSCJAG00000011141	KNOWN_BY_PROJECTION	protein_coding	PAN2	chromosome:C_jacchus3.2.1:9:1:124281992:1	45097065	45111633	R	PAN2 poly(A) specific ribonuclease subunit [Source:HGNC Symbol;Acc:HGNC:20074]
ENSCJAG00000020691	KNOWN	protein_coding	ZNF521	chromosome:C_jacchus3.2.1:13:1:117903854:1	62548081	62844625	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038474}; Zinc finger protein 521 {ECO:0000313|EMBL:JAB13633.1}  [Source:UniProtKB/TrEMBL;Acc:F7IQR0]
ENSCJAG00000020687	NOVEL	protein_coding	ENSCJAG00000020687	chromosome:C_jacchus3.2.1:13:1:117903854:1	62179870	62180841	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038460}  [Source:UniProtKB/TrEMBL;Acc:F7IQT9]
ENSCJAG00000020689	NOVEL	protein_coding	ENSCJAG00000020689	chromosome:C_jacchus3.2.1:13:1:117903854:1	62501169	62502228	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052142}  [Source:UniProtKB/TrEMBL;Acc:F7I0D7]
ENSCJAG00000008977	KNOWN	protein_coding	CCT5	chromosome:C_jacchus3.2.1:2:1:204313951:1	193721497	193735964	R	T-complex protein 1 subunit epsilon {ECO:0000313|EMBL:JAB03080.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016628}  [Source:UniProtKB/TrEMBL;Acc:F6Y1Q5]
ENSCJAG00000020684	KNOWN_BY_PROJECTION	protein_coding	HRH4	chromosome:C_jacchus3.2.1:13:1:117903854:1	61896792	61914513	D	histamine receptor H4 [Source:HGNC Symbol;Acc:HGNC:17383]
ENSCJAG00000011259	KNOWN	protein_coding	CNPY2	chromosome:C_jacchus3.2.1:9:1:124281992:1	45091146	45096743	R	Protein canopy homolog 2 isoform 1 {ECO:0000313|EMBL:JAB07912.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020743}  [Source:UniProtKB/TrEMBL;Acc:F7H125]
ENSCJAG00000020674	KNOWN	protein_coding	IMPACT	chromosome:C_jacchus3.2.1:13:1:117903854:1	61840256	61871475	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038452}  [Source:UniProtKB/TrEMBL;Acc:F7IT46]
ENSCJAG00000008647	NOVEL	protein_coding	ENSCJAG00000008647	chromosome:C_jacchus3.2.1:1:1:210400635:1	91528380	91529622	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015924}  [Source:UniProtKB/TrEMBL;Acc:F7E7P2]
ENSCJAG00000003711	KNOWN	protein_coding	LARP7	chromosome:C_jacchus3.2.1:3:1:190850796:1	80974896	80995141	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006739}  [Source:UniProtKB/TrEMBL;Acc:F7F321]
ENSCJAG00000010467	NOVEL	protein_coding	ENSCJAG00000010467	chromosome:C_jacchus3.2.1:1:1:210400635:1	91449438	91455491	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019314}  [Source:UniProtKB/TrEMBL;Acc:F6RWE5]
ENSCJAG00000031310	NOVEL	protein_coding	ENSCJAG00000031310	chromosome:C_jacchus3.2.1:1:1:210400635:1	91333400	91333744	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043274}  [Source:UniProtKB/TrEMBL;Acc:F7I830]
ENSCJAG00000019521	NOVEL	protein_coding	ENSCJAG00000019521	chromosome:C_jacchus3.2.1:3:1:190850796:1	80874623	80875489	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036263}  [Source:UniProtKB/TrEMBL;Acc:F7EIH2]
ENSCJAG00000011275	KNOWN	protein_coding	CS	chromosome:C_jacchus3.2.1:9:1:124281992:1	45045741	45080652	R	Citrate synthase {ECO:0000256|RuleBase:RU000441}  [Source:UniProtKB/TrEMBL;Acc:F7F407]
ENSCJAG00000009079	KNOWN_BY_PROJECTION	protein_coding	CMBL	chromosome:C_jacchus3.2.1:2:1:204313951:1	193688535	193699663	D	carboxymethylenebutenolidase homolog (Pseudomonas) [Source:HGNC Symbol;Acc:HGNC:25090]
ENSCJAG00000017510	KNOWN_BY_PROJECTION	protein_coding	DBNDD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	39569454	39570247	D	dysbindin (dystrobrevin binding protein 1) domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
ENSCJAG00000000679	KNOWN_BY_PROJECTION	protein_coding	CTSC	chromosome:C_jacchus3.2.1:11:1:130397257:1	49524379	49568643	D	cathepsin C [Source:HGNC Symbol;Acc:HGNC:2528]
ENSCJAG00000017512	KNOWN_BY_PROJECTION	protein_coding	TP53TG5	chromosome:C_jacchus3.2.1:5:1:159171411:1	39532310	39537029	R	TP53 target 5 [Source:HGNC Symbol;Acc:HGNC:15856]
ENSCJAG00000011319	KNOWN	protein_coding	COQ10A	chromosome:C_jacchus3.2.1:9:1:124281992:1	45040015	45045003	D	Coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform b {ECO:0000313|EMBL:JAB01674.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020858}  [Source:UniProtKB/TrEMBL;Acc:F7EC97]
ENSCJAG00000017516	KNOWN	protein_coding	SYS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	39521380	39525549	D	Protein SYS1 homolog isoform a {ECO:0000313|EMBL:JAB06533.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032263}  [Source:UniProtKB/TrEMBL;Acc:F7DKU8]
ENSCJAG00000036213	NOVEL	pseudogene	ENSCJAG00000036213	chromosome:C_jacchus3.2.1:9:1:124281992:1	45008718	45009478	R	<no descrition>
ENSCJAG00000017524	KNOWN	protein_coding	SDC4	chromosome:C_jacchus3.2.1:5:1:159171411:1	39482607	39505630	R	Syndecan {ECO:0000256|RuleBase:RU000649}  [Source:UniProtKB/TrEMBL;Acc:A4K2U8]
ENSCJAG00000009091	KNOWN	protein_coding	MARCH6	chromosome:C_jacchus3.2.1:2:1:204313951:1	193541144	193620321	R	E3 ubiquitin-protein ligase MARCH6 isoform 2 {ECO:0000313|EMBL:JAB48182.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016850}  [Source:UniProtKB/TrEMBL;Acc:F6XBP6]
ENSCJAG00000020648	KNOWN	protein_coding	OSBPL1A	chromosome:C_jacchus3.2.1:13:1:117903854:1	61557441	61798721	R	Oxysterol-binding protein {ECO:0000256|RuleBase:RU003845}  [Source:UniProtKB/TrEMBL;Acc:F7IT78]
ENSCJAG00000000695	KNOWN_BY_PROJECTION	protein_coding	GRM5	chromosome:C_jacchus3.2.1:11:1:130397257:1	48956655	49325046	D	glutamate receptor, metabotropic 5 [Source:HGNC Symbol;Acc:HGNC:4597]
ENSCJAG00000000702	NOVEL	protein_coding	ENSCJAG00000000702	chromosome:C_jacchus3.2.1:11:1:130397257:1	48475062	48475542	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001202}  [Source:UniProtKB/TrEMBL;Acc:F6ZIF0]
ENSCJAG00000011349	KNOWN	protein_coding	ANKRD52	chromosome:C_jacchus3.2.1:9:1:124281992:1	45008303	45029803	R	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C {ECO:0000313|EMBL:JAB05180.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051567}  [Source:UniProtKB/TrEMBL;Acc:F6UX12]
ENSCJAG00000014296	KNOWN_BY_PROJECTION	protein_coding	BCAR1	chromosome:C_jacchus3.2.1:20:1:44557958:1	29149078	29187815	R	breast cancer anti-estrogen resistance 1 [Source:HGNC Symbol;Acc:HGNC:971]
ENSCJAG00000000698	KNOWN_BY_PROJECTION	protein_coding	TYR	chromosome:C_jacchus3.2.1:11:1:130397257:1	48473594	48593012	R	tyrosinase [Source:HGNC Symbol;Acc:HGNC:12442]
ENSCJAG00000009213	KNOWN	protein_coding	ROPN1L	chromosome:C_jacchus3.2.1:2:1:204313951:1	193509266	193533578	R	Ropporin-1-like protein {ECO:0000313|EMBL:JAB01604.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016871}  [Source:UniProtKB/TrEMBL;Acc:F6WPX4]
ENSCJAG00000009224	NOVEL	protein_coding	ENSCJAG00000009224	chromosome:C_jacchus3.2.1:2:1:204313951:1	193301818	193390206	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016889}  [Source:UniProtKB/TrEMBL;Acc:F6W608]
ENSCJAG00000009227	KNOWN_BY_PROJECTION	protein_coding	DAP	chromosome:C_jacchus3.2.1:2:1:204313951:1	193186328	193269650	D	death-associated protein [Source:HGNC Symbol;Acc:HGNC:2672]
ENSCJAG00000009232	NOVEL	protein_coding	ENSCJAG00000009232	chromosome:C_jacchus3.2.1:2:1:204313951:1	193146254	193147735	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016911}  [Source:UniProtKB/TrEMBL;Acc:F6UDY9]
ENSCJAG00000008348	NOVEL	pseudogene	ENSCJAG00000008348	chromosome:C_jacchus3.2.1:2:1:204313951:1	192031255	192031904	R	<no descrition>
ENSCJAG00000020641	KNOWN	protein_coding	CABYR	chromosome:C_jacchus3.2.1:13:1:117903854:1	61531286	61557100	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038375}  [Source:UniProtKB/TrEMBL;Acc:F7I4N2]
ENSCJAG00000020637	NOVEL	pseudogene	ENSCJAG00000020637	chromosome:C_jacchus3.2.1:13:1:117903854:1	61447420	61448638	R	<no descrition>
ENSCJAG00000020629	KNOWN	protein_coding	TTC39C	chromosome:C_jacchus3.2.1:13:1:117903854:1	61378192	61525716	D	Tetratricopeptide repeat protein 39C isoform 1 {ECO:0000313|EMBL:JAB05489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038358}  [Source:UniProtKB/TrEMBL;Acc:F7I708]
ENSCJAG00000017526	KNOWN_BY_PROJECTION	protein_coding	RBPJL	chromosome:C_jacchus3.2.1:5:1:159171411:1	39465424	39473914	D	recombination signal binding protein for immunoglobulin kappa J region-like [Source:HGNC Symbol;Acc:HGNC:13761]
ENSCJAG00000014320	NOVEL	protein_coding	ENSCJAG00000014320	chromosome:C_jacchus3.2.1:20:1:44557958:1	29141713	29144805	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026353}  [Source:UniProtKB/TrEMBL;Acc:F7I9F5]
ENSCJAG00000000704	KNOWN_BY_PROJECTION	protein_coding	NOX4	chromosome:C_jacchus3.2.1:11:1:130397257:1	48296297	48448508	D	NADPH oxidase 4 [Source:HGNC Symbol;Acc:HGNC:7891]
ENSCJAG00000014335	NOVEL	protein_coding	ENSCJAG00000014335	chromosome:C_jacchus3.2.1:20:1:44557958:1	29123988	29128879	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026385}  [Source:UniProtKB/TrEMBL;Acc:F7I6Z6]
ENSCJAG00000013387	NOVEL	protein_coding	ENSCJAG00000013387	chromosome:C_jacchus3.2.1:12:1:121768101:1	33384973	33629947	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024585}  [Source:UniProtKB/TrEMBL;Acc:F7FN48]
ENSCJAG00000017541	KNOWN_BY_PROJECTION	protein_coding	MATN4	chromosome:C_jacchus3.2.1:5:1:159171411:1	39452096	39465852	R	matrilin 4 [Source:HGNC Symbol;Acc:HGNC:6910]
ENSCJAG00000014349	KNOWN	protein_coding	ZFP1	chromosome:C_jacchus3.2.1:20:1:44557958:1	29027635	29051986	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026395}; Zinc finger protein 1 homolog {ECO:0000313|EMBL:JAB07090.1}  [Source:UniProtKB/TrEMBL;Acc:F7I4P3]
ENSCJAG00000002416	KNOWN	protein_coding	CFB	chromosome:C_jacchus3.2.1:4:1:171630274:1	32473267	32545907	D	Complement factor B preproprotein {ECO:0000313|EMBL:JAB17376.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004386}  [Source:UniProtKB/TrEMBL;Acc:F7AP80]
ENSCJAG00000017558	KNOWN_BY_PROJECTION	protein_coding	SLPI	chromosome:C_jacchus3.2.1:5:1:159171411:1	39420617	39422401	R	secretory leukocyte peptidase inhibitor [Source:HGNC Symbol;Acc:HGNC:11092]
ENSCJAG00000014356	KNOWN	protein_coding	LDHD	chromosome:C_jacchus3.2.1:20:1:44557958:1	28994004	28998693	R	Putative D-lactate dehydrogenase, mitochondrial isoform 2 {ECO:0000313|EMBL:JAB04089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026439}  [Source:UniProtKB/TrEMBL;Acc:F7HV72]
ENSCJAG00000014383	NOVEL	protein_coding	ENSCJAG00000014383	chromosome:C_jacchus3.2.1:20:1:44557958:1	28929067	28930539	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026455}  [Source:UniProtKB/TrEMBL;Acc:F7HQ66]
ENSCJAG00000017560	NOVEL	protein_coding	SEMG1B	chromosome:C_jacchus3.2.1:5:1:159171411:1	39376593	39391793	D	Semenogelin I isoform b preproprotein {ECO:0000313|EMBL:ABO52979.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032359}  [Source:UniProtKB/TrEMBL;Acc:A4K2U4]
ENSCJAG00000014378	KNOWN	protein_coding	ZNRF1	chromosome:C_jacchus3.2.1:20:1:44557958:1	28868471	28990219	D	E3 ubiquitin-protein ligase ZNRF1 {ECO:0000313|EMBL:JAB09358.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026444}  [Source:UniProtKB/TrEMBL;Acc:F7HV44]
ENSCJAG00000017566	KNOWN	protein_coding	PI3	chromosome:C_jacchus3.2.1:5:1:159171411:1	39333078	39334714	D	Elafin preproprotein {ECO:0000313|EMBL:ABO52977.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032362}  [Source:UniProtKB/TrEMBL;Acc:A4K2U2]
ENSCJAG00000014388	NOVEL	protein_coding	ENSCJAG00000014388	chromosome:C_jacchus3.2.1:20:1:44557958:1	28861845	28862682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026469}  [Source:UniProtKB/TrEMBL;Acc:F7IT79]
ENSCJAG00000017567	KNOWN_BY_PROJECTION	protein_coding	WFDC12	chromosome:C_jacchus3.2.1:5:1:159171411:1	39275293	39276333	R	WAP four-disulfide core domain 12 [Source:HGNC Symbol;Acc:HGNC:16115]
ENSCJAG00000017572	KNOWN	protein_coding	WFDC5	chromosome:C_jacchus3.2.1:5:1:159171411:1	39260968	39266767	R	WAP four-disulfide core domain protein 5  [Source:UniProtKB/Swiss-Prot;Acc:A4K2U0]
ENSCJAG00000000784	KNOWN_BY_PROJECTION	protein_coding	FOLH1	chromosome:C_jacchus3.2.1:11:1:130397257:1	48074883	48133554	R	folate hydrolase (prostate-specific membrane antigen) 1 [Source:HGNC Symbol;Acc:HGNC:3788]
ENSCJAG00000020598	KNOWN_BY_PROJECTION	protein_coding	LAMA3	chromosome:C_jacchus3.2.1:13:1:117903854:1	61073470	61338619	D	laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
ENSCJAG00000017576	KNOWN_BY_PROJECTION	protein_coding	KCNS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	39246969	39252107	R	potassium voltage-gated channel, modifier subfamily S, member 1 [Source:HGNC Symbol;Acc:HGNC:6300]
ENSCJAG00000037639	NOVEL	protein_coding	ENSCJAG00000037639	chromosome:C_jacchus3.2.1:12:1:121768101:1	33337342	33382361	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051040}  [Source:UniProtKB/TrEMBL;Acc:F7CI70]
ENSCJAG00000031950	KNOWN_BY_PROJECTION	protein_coding	ZFAND4	chromosome:C_jacchus3.2.1:12:1:121768101:1	33309388	33382361	R	zinc finger, AN1-type domain 4 [Source:HGNC Symbol;Acc:HGNC:23504]
ENSCJAG00000014399	KNOWN_BY_PROJECTION	protein_coding	WDR59	chromosome:C_jacchus3.2.1:20:1:44557958:1	28732278	28852011	R	WD repeat domain 59 [Source:HGNC Symbol;Acc:HGNC:25706]
ENSCJAG00000013396	NOVEL	protein_coding	ENSCJAG00000013396	chromosome:C_jacchus3.2.1:12:1:121768101:1	33228758	33229157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024593}  [Source:UniProtKB/TrEMBL;Acc:F7F9G7]
ENSCJAG00000013401	KNOWN_BY_PROJECTION	protein_coding	MARCH8	chromosome:C_jacchus3.2.1:12:1:121768101:1	33143165	33150464	R	membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:23356]
ENSCJAG00000034776	KNOWN_BY_PROJECTION	protein_coding	ATXN3	chromosome:C_jacchus3.2.1:20:1:44557958:1	28630500	28631553	D	ataxin 3 [Source:HGNC Symbol;Acc:HGNC:7106]
ENSCJAG00000011444	KNOWN_BY_PROJECTION	protein_coding	SLC39A5	chromosome:C_jacchus3.2.1:9:1:124281992:1	45000947	45008338	D	solute carrier family 39 (zinc transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:20502]
ENSCJAG00000000817	NOVEL	pseudogene	ENSCJAG00000000817	chromosome:C_jacchus3.2.1:11:1:130397257:1	48024662	48025847	D	<no descrition>
ENSCJAG00000017580	KNOWN	protein_coding	STK4	chromosome:C_jacchus3.2.1:5:1:159171411:1	39118657	39226497	D	Serine/threonine-protein kinase 4 {ECO:0000313|EMBL:JAB20388.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032432}  [Source:UniProtKB/TrEMBL;Acc:F7E017]
ENSCJAG00000013406	KNOWN_BY_PROJECTION	protein_coding	ALOX5	chromosome:C_jacchus3.2.1:12:1:121768101:1	33063629	33126504	D	arachidonate 5-lipoxygenase [Source:HGNC Symbol;Acc:HGNC:435]
ENSCJAG00000000824	NOVEL	protein_coding	ENSCJAG00000000824	chromosome:C_jacchus3.2.1:11:1:130397257:1	47976448	47982044	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001410}  [Source:UniProtKB/TrEMBL;Acc:F6XUD3]
ENSCJAG00000014457	KNOWN_BY_PROJECTION	protein_coding	MLKL	chromosome:C_jacchus3.2.1:20:1:44557958:1	28529116	28533649	R	mixed lineage kinase domain-like [Source:HGNC Symbol;Acc:HGNC:26617]
ENSCJAG00000014444	KNOWN	protein_coding	FA2H	chromosome:C_jacchus3.2.1:20:1:44557958:1	28550521	28616063	R	Fatty acid 2-hydroxylase {ECO:0000313|EMBL:JAB17175.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026584}  [Source:UniProtKB/TrEMBL;Acc:F7I985]
ENSCJAG00000014460	KNOWN_BY_PROJECTION	protein_coding	RFWD3	chromosome:C_jacchus3.2.1:20:1:44557958:1	28470980	28523969	R	ring finger and WD repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:25539]
ENSCJAG00000032984	NOVEL	protein_coding	ENSCJAG00000032984	chromosome:C_jacchus3.2.1:20:1:44557958:1	28348487	28350974	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052029}  [Source:UniProtKB/TrEMBL;Acc:F7IJB1]
ENSCJAG00000009238	KNOWN_BY_PROJECTION	protein_coding	CTNND2	chromosome:C_jacchus3.2.1:2:1:204313951:1	191938169	192933614	D	catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
ENSCJAG00000017607	KNOWN	protein_coding	TOMM34	chromosome:C_jacchus3.2.1:5:1:159171411:1	39093157	39113142	R	Mitochondrial import receptor subunit TOM34 {ECO:0000313|EMBL:JAB01605.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032468}  [Source:UniProtKB/TrEMBL;Acc:F7HH70]
ENSCJAG00000003564	KNOWN_BY_PROJECTION	protein_coding	ANK2	chromosome:C_jacchus3.2.1:3:1:190850796:1	80197336	80409076	R	ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
ENSCJAG00000017628	KNOWN_BY_PROJECTION	protein_coding	PABPC1L	chromosome:C_jacchus3.2.1:5:1:159171411:1	39058613	39090086	D	poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:HGNC:15797]
ENSCJAG00000009322	NOVEL	pseudogene	ENSCJAG00000009322	chromosome:C_jacchus3.2.1:2:1:204313951:1	191773013	191774240	D	<no descrition>
ENSCJAG00000020590	KNOWN	protein_coding	ANKRD29	chromosome:C_jacchus3.2.1:13:1:117903854:1	60989030	61046198	R	Ankyrin repeat domain-containing protein 29 {ECO:0000313|EMBL:JAB14264.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038274}  [Source:UniProtKB/TrEMBL;Acc:F7INI4]
ENSCJAG00000009325	NOVEL	pseudogene	ENSCJAG00000009325	chromosome:C_jacchus3.2.1:2:1:204313951:1	191097328	191097948	R	<no descrition>
ENSCJAG00000035583	NOVEL	protein_coding	ENSCJAG00000035583	chromosome:C_jacchus3.2.1:2:1:204313951:1	190780527	190802313	D	<no descrition>
ENSCJAG00000017664	KNOWN	protein_coding	YWHAB	chromosome:C_jacchus3.2.1:5:1:159171411:1	39032663	39056599	D	14-3-3 protein beta/alpha {ECO:0000313|EMBL:JAB08712.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032559}  [Source:UniProtKB/TrEMBL;Acc:F7G9D2]
ENSCJAG00000018161	KNOWN	protein_coding	ADPGK	chromosome:C_jacchus3.2.1:10:1:132174527:1	15079775	15121835	R	ADP-dependent glucokinase {ECO:0000313|EMBL:JAB44376.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033626}  [Source:UniProtKB/TrEMBL;Acc:F6R9U1]
ENSCJAG00000020581	KNOWN_BY_PROJECTION	protein_coding	NPC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	60905823	60954036	R	Niemann-Pick disease, type C1 [Source:HGNC Symbol;Acc:HGNC:7897]
ENSCJAG00000014476	KNOWN_BY_PROJECTION	protein_coding	GLG1	chromosome:C_jacchus3.2.1:20:1:44557958:1	28270027	28448081	R	golgi glycoprotein 1 [Source:HGNC Symbol;Acc:HGNC:4316]
ENSCJAG00000018181	KNOWN	protein_coding	BBS4	chromosome:C_jacchus3.2.1:10:1:132174527:1	15023223	15066531	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033690}  [Source:UniProtKB/TrEMBL;Acc:F6Q1R3]
ENSCJAG00000003147	KNOWN_BY_PROJECTION	protein_coding	VPS13A	chromosome:C_jacchus3.2.1:1:1:210400635:1	91089839	91304191	R	vacuolar protein sorting 13 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:1908]
ENSCJAG00000018219	KNOWN_BY_PROJECTION	protein_coding	ARIH1	chromosome:C_jacchus3.2.1:10:1:132174527:1	14871400	14991770	D	ariadne RBR E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:689]
ENSCJAG00000016317	NOVEL	protein_coding	ENSCJAG00000016317	chromosome:C_jacchus3.2.1:12:1:121768101:1	32955413	32957249	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030029}  [Source:UniProtKB/TrEMBL;Acc:F6S492]
ENSCJAG00000017675	KNOWN_BY_PROJECTION	protein_coding	RIMS4	chromosome:C_jacchus3.2.1:5:1:159171411:1	38897448	38956619	R	regulating synaptic membrane exocytosis 4 [Source:HGNC Symbol;Acc:HGNC:16183]
ENSCJAG00000018244	KNOWN_BY_PROJECTION	protein_coding	TMEM202	chromosome:C_jacchus3.2.1:10:1:132174527:1	14819401	14830996	D	transmembrane protein 202 [Source:HGNC Symbol;Acc:HGNC:33733]
ENSCJAG00000018250	NOVEL	pseudogene	ENSCJAG00000018250	chromosome:C_jacchus3.2.1:10:1:132174527:1	14798237	14798593	D	<no descrition>
ENSCJAG00000020571	KNOWN_BY_PROJECTION	protein_coding	C18orf8	chromosome:C_jacchus3.2.1:13:1:117903854:1	60876942	60906133	D	chromosome 18 open reading frame 8 [Source:HGNC Symbol;Acc:HGNC:24326]
ENSCJAG00000017683	KNOWN_BY_PROJECTION	protein_coding	KCNK15	chromosome:C_jacchus3.2.1:5:1:159171411:1	38891582	38896664	D	potassium channel, two pore domain subfamily K, member 15 [Source:HGNC Symbol;Acc:HGNC:13814]
ENSCJAG00000011455	KNOWN	protein_coding	NABP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	44993945	45000756	D	SOSS complex subunit B1 {ECO:0000313|EMBL:JAB02734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021060}  [Source:UniProtKB/TrEMBL;Acc:F6U5R3]
ENSCJAG00000017699	KNOWN_BY_PROJECTION	protein_coding	WISP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	38854638	38867056	D	WNT1 inducible signaling pathway protein 2 [Source:HGNC Symbol;Acc:HGNC:12770]
ENSCJAG00000016304	KNOWN_BY_PROJECTION	protein_coding	CXCL12	chromosome:C_jacchus3.2.1:12:1:121768101:1	32328820	32341234	R	chemokine (C-X-C motif) ligand 12 [Source:HGNC Symbol;Acc:HGNC:10672]
ENSCJAG00000016302	NOVEL	pseudogene	ENSCJAG00000016302	chromosome:C_jacchus3.2.1:12:1:121768101:1	32262017	32262543	D	<no descrition>
ENSCJAG00000016295	NOVEL	pseudogene	ENSCJAG00000016295	chromosome:C_jacchus3.2.1:12:1:121768101:1	31962959	31963678	D	<no descrition>
ENSCJAG00000016286	KNOWN	protein_coding	ZNF32	chromosome:C_jacchus3.2.1:12:1:121768101:1	31497829	31504405	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029980}; Zinc finger protein 32 {ECO:0000313|EMBL:JAB04426.1}  [Source:UniProtKB/TrEMBL;Acc:F7I2L2]
ENSCJAG00000014501	KNOWN_BY_PROJECTION	protein_coding	PDPR	chromosome:C_jacchus3.2.1:20:1:44557958:1	28200573	28244557	R	pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
ENSCJAG00000009326	KNOWN_BY_PROJECTION	protein_coding	DNAH5	chromosome:C_jacchus3.2.1:2:1:204313951:1	189624785	189916163	D	dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
ENSCJAG00000016280	KNOWN	protein_coding	ZNF485	chromosome:C_jacchus3.2.1:12:1:121768101:1	31468165	31480031	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029969}; Zinc finger protein 485 {ECO:0000313|EMBL:JAB17879.1}  [Source:UniProtKB/TrEMBL;Acc:F7I4Z4]
ENSCJAG00000016279	NOVEL	pseudogene	ENSCJAG00000016279	chromosome:C_jacchus3.2.1:12:1:121768101:1	31466704	31468015	R	<no descrition>
ENSCJAG00000020556	KNOWN	protein_coding	RIOK3	chromosome:C_jacchus3.2.1:13:1:117903854:1	60826961	60868651	D	Serine/threonine-protein kinase RIO3 {ECO:0000313|EMBL:JAB08461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038214}  [Source:UniProtKB/TrEMBL;Acc:F7HJY7]
ENSCJAG00000011457	KNOWN	protein_coding	RNF41	chromosome:C_jacchus3.2.1:9:1:124281992:1	44954510	44991885	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021101}  [Source:UniProtKB/TrEMBL;Acc:F6T7U5]
ENSCJAG00000020549	NOVEL	pseudogene	ENSCJAG00000020549	chromosome:C_jacchus3.2.1:13:1:117903854:1	60615946	60617042	D	<no descrition>
ENSCJAG00000011055	NOVEL	pseudogene	ENSCJAG00000011055	chromosome:C_jacchus3.2.1:2:1:204313951:1	189478514	189478947	R	<no descrition>
ENSCJAG00000020550	KNOWN	protein_coding	TMEM241	chromosome:C_jacchus3.2.1:13:1:117903854:1	60562597	60814602	R	Transmembrane protein 241 {ECO:0000313|EMBL:JAB02781.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038190}  [Source:UniProtKB/TrEMBL;Acc:F7I027]
ENSCJAG00000017705	KNOWN_BY_PROJECTION	protein_coding	ADA	chromosome:C_jacchus3.2.1:5:1:159171411:1	38761022	38796368	R	adenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]
ENSCJAG00000016278	KNOWN	protein_coding	ZNF239	chromosome:C_jacchus3.2.1:12:1:121768101:1	31429017	31449971	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029952}; Zinc finger protein 239 {ECO:0000313|EMBL:JAB10405.1}  [Source:UniProtKB/TrEMBL;Acc:F7I7A4]
ENSCJAG00000000830	NOVEL	protein_coding	ENSCJAG00000000830	chromosome:C_jacchus3.2.1:11:1:130397257:1	47952110	48000000	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001399}  [Source:UniProtKB/TrEMBL;Acc:F7AHB3]
ENSCJAG00000016273	NOVEL	protein_coding	ENSCJAG00000016273	chromosome:C_jacchus3.2.1:12:1:121768101:1	31340783	31372473	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003390}  [Source:UniProtKB/TrEMBL;Acc:F7CVW6]
ENSCJAG00000031797	NOVEL	pseudogene	ENSCJAG00000031797	chromosome:C_jacchus3.2.1:12:1:121768101:1	31289364	31289676	R	<no descrition>
ENSCJAG00000017714	KNOWN_BY_PROJECTION	protein_coding	PKIG	chromosome:C_jacchus3.2.1:5:1:159171411:1	38661551	38760552	D	protein kinase (cAMP-dependent, catalytic) inhibitor gamma [Source:HGNC Symbol;Acc:HGNC:9019]
ENSCJAG00000000851	NOVEL	protein_coding	ENSCJAG00000000851	chromosome:C_jacchus3.2.1:11:1:130397257:1	47939957	47940728	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001453}  [Source:UniProtKB/TrEMBL;Acc:F6WKW0]
ENSCJAG00000020547	KNOWN_BY_PROJECTION	protein_coding	CABLES1	chromosome:C_jacchus3.2.1:13:1:117903854:1	60495860	60630091	D	Cdk5 and Abl enzyme substrate 1 [Source:HGNC Symbol;Acc:HGNC:25097]
ENSCJAG00000003258	KNOWN_BY_PROJECTION	protein_coding	GNA14	chromosome:C_jacchus3.2.1:1:1:210400635:1	90842837	91085097	D	guanine nucleotide binding protein (G protein), alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]
ENSCJAG00000033850	NOVEL	protein_coding	ENSCJAG00000033850	chromosome:C_jacchus3.2.1:11:1:130397257:1	47936269	47938175	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044736}  [Source:UniProtKB/TrEMBL;Acc:F7GJ87]
ENSCJAG00000003266	NOVEL	protein_coding	ENSCJAG00000003266	chromosome:C_jacchus3.2.1:1:1:210400635:1	90774234	90776064	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005933}  [Source:UniProtKB/TrEMBL;Acc:F7IEF3]
ENSCJAG00000003288	NOVEL	pseudogene	ENSCJAG00000003288	chromosome:C_jacchus3.2.1:1:1:210400635:1	90518914	90519268	R	<no descrition>
ENSCJAG00000020546	NOVEL	pseudogene	ENSCJAG00000020546	chromosome:C_jacchus3.2.1:13:1:117903854:1	60437498	60437936	R	<no descrition>
ENSCJAG00000017722	KNOWN	protein_coding	SERINC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	38624329	38651924	R	Serine incorporator 3 {ECO:0000313|EMBL:JAB05133.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032697}  [Source:UniProtKB/TrEMBL;Acc:F7HBQ1]
ENSCJAG00000037618	KNOWN_BY_PROJECTION	protein_coding	EHMT2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32456394	32627575	R	euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
ENSCJAG00000003480	KNOWN	protein_coding	ENSCJAG00000003480	chromosome:C_jacchus3.2.1:3:1:190850796:1	79826668	80143682	D	Calcium/calmodulin-dependent protein kinase type II subunit delta isoform 3 {ECO:0000313|EMBL:JAB03832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006422}  [Source:UniProtKB/TrEMBL;Acc:F7H6E2]
ENSCJAG00000020545	KNOWN	protein_coding	RBBP8	chromosome:C_jacchus3.2.1:13:1:117903854:1	60277681	60346780	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038166}  [Source:UniProtKB/TrEMBL;Acc:F7I2G7]
ENSCJAG00000003268	KNOWN	protein_coding	GNAQ	chromosome:C_jacchus3.2.1:1:1:210400635:1	90430793	90764373	D	Guanine nucleotide-binding protein G(Q) subunit alpha {ECO:0000313|EMBL:JAB04526.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005953}  [Source:UniProtKB/TrEMBL;Acc:F7IC22]
ENSCJAG00000020544	NOVEL	protein_coding	ENSCJAG00000020544	chromosome:C_jacchus3.2.1:13:1:117903854:1	59658190	59659528	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038165}  [Source:UniProtKB/TrEMBL;Acc:F7I2G9]
ENSCJAG00000020532	KNOWN_BY_PROJECTION	protein_coding	MIB1	chromosome:C_jacchus3.2.1:13:1:117903854:1	58974169	59080860	D	mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
ENSCJAG00000020543	KNOWN_BY_PROJECTION	protein_coding	GATA6	chromosome:C_jacchus3.2.1:13:1:117903854:1	59406964	59442148	D	GATA binding protein 6 [Source:HGNC Symbol;Acc:HGNC:4174]
ENSCJAG00000020529	KNOWN_BY_PROJECTION	protein_coding	ABHD3	chromosome:C_jacchus3.2.1:13:1:117903854:1	58849121	58896852	R	abhydrolase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:18718]
ENSCJAG00000016245	KNOWN_BY_PROJECTION	protein_coding	ZNF37A	chromosome:C_jacchus3.2.1:12:1:121768101:1	31242354	31249221	D	zinc finger protein 37A [Source:HGNC Symbol;Acc:HGNC:13102]
ENSCJAG00000020526	KNOWN	protein_coding	SNRPD1	chromosome:C_jacchus3.2.1:13:1:117903854:1	58795179	58805345	D	Small nuclear ribonucleoprotein Sm D1 {ECO:0000313|EMBL:JAB11334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038140}  [Source:UniProtKB/TrEMBL;Acc:F7I755]
ENSCJAG00000000859	KNOWN_BY_PROJECTION	protein_coding	NAALAD2	chromosome:C_jacchus3.2.1:11:1:130397257:1	47838633	47899862	R	N-acetylated alpha-linked acidic dipeptidase 2 [Source:HGNC Symbol;Acc:HGNC:14526]
ENSCJAG00000020524	NOVEL	pseudogene	ENSCJAG00000020524	chromosome:C_jacchus3.2.1:13:1:117903854:1	58763857	58764201	D	<no descrition>
ENSCJAG00000003475	KNOWN_BY_PROJECTION	protein_coding	ARSJ	chromosome:C_jacchus3.2.1:3:1:190850796:1	79595138	79688772	D	arylsulfatase family, member J [Source:HGNC Symbol;Acc:HGNC:26286]
ENSCJAG00000014539	NOVEL	protein_coding	ENSCJAG00000014539	chromosome:C_jacchus3.2.1:20:1:44557958:1	28170083	28182891	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049225}  [Source:UniProtKB/TrEMBL;Acc:F6W291]
ENSCJAG00000003461	KNOWN	protein_coding	UGT8	chromosome:C_jacchus3.2.1:3:1:190850796:1	78963489	79046413	R	2-hydroxyacylsphingosine 1-beta-galactosyltransferase {ECO:0000313|EMBL:JAB22717.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006301}  [Source:UniProtKB/TrEMBL;Acc:F7F597]
ENSCJAG00000020517	KNOWN_BY_PROJECTION	protein_coding	ESCO1	chromosome:C_jacchus3.2.1:13:1:117903854:1	58694987	58783885	R	establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24645]
ENSCJAG00000020516	NOVEL	protein_coding	ENSCJAG00000020516	chromosome:C_jacchus3.2.1:13:1:117903854:1	58622884	58623959	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038123}  [Source:UniProtKB/TrEMBL;Acc:F7I9K8]
ENSCJAG00000016238	KNOWN	protein_coding	HNRNPF	chromosome:C_jacchus3.2.1:12:1:121768101:1	31144146	31165217	R	Heterogeneous nuclear ribonucleoprotein F {ECO:0000313|EMBL:JAB07877.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029898}  [Source:UniProtKB/TrEMBL;Acc:F7INV2]
ENSCJAG00000003289	KNOWN_BY_PROJECTION	protein_coding	CEP78	chromosome:C_jacchus3.2.1:1:1:210400635:1	90220143	90260709	R	centrosomal protein 78kDa [Source:HGNC Symbol;Acc:HGNC:25740]
ENSCJAG00000031660	NOVEL	protein_coding	ENSCJAG00000031660	chromosome:C_jacchus3.2.1:1:1:210400635:1	90167876	90169322	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049266}  [Source:UniProtKB/TrEMBL;Acc:F6UVT7]
ENSCJAG00000020496	KNOWN_BY_PROJECTION	protein_coding	GREB1L	chromosome:C_jacchus3.2.1:13:1:117903854:1	58522773	58688324	D	growth regulation by estrogen in breast cancer-like [Source:HGNC Symbol;Acc:HGNC:31042]
ENSCJAG00000011483	KNOWN	protein_coding	SMARCC2	chromosome:C_jacchus3.2.1:9:1:124281992:1	44908785	44937428	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021277}  [Source:UniProtKB/TrEMBL;Acc:F6QTA5]
ENSCJAG00000017736	KNOWN	protein_coding	TTPAL	chromosome:C_jacchus3.2.1:5:1:159171411:1	38602706	38618081	D	Alpha-tocopherol transfer protein-like isoform 1 {ECO:0000313|EMBL:JAB03222.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032712}  [Source:UniProtKB/TrEMBL;Acc:F7H157]
ENSCJAG00000010904	KNOWN_BY_PROJECTION	protein_coding	TRIO	chromosome:C_jacchus3.2.1:2:1:204313951:1	189009497	189398131	R	trio Rho guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12303]
ENSCJAG00000014559	KNOWN_BY_PROJECTION	protein_coding	EXOSC6	chromosome:C_jacchus3.2.1:20:1:44557958:1	28141163	28141978	D	exosome component 6 [Source:HGNC Symbol;Acc:HGNC:19055]
ENSCJAG00000020494	NOVEL	protein_coding	ENSCJAG00000020494	chromosome:C_jacchus3.2.1:13:1:117903854:1	58376830	58381207	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051071}  [Source:UniProtKB/TrEMBL;Acc:F7C3M8]
ENSCJAG00000000903	KNOWN_BY_PROJECTION	protein_coding	CHORDC1	chromosome:C_jacchus3.2.1:11:1:130397257:1	47808045	47831013	D	cysteine and histidine-rich domain (CHORD) containing 1 [Source:HGNC Symbol;Acc:HGNC:14525]
ENSCJAG00000017746	KNOWN_BY_PROJECTION	protein_coding	HNF4A	chromosome:C_jacchus3.2.1:5:1:159171411:1	38523257	38557052	D	hepatocyte nuclear factor 4, alpha [Source:HGNC Symbol;Acc:HGNC:5024]
ENSCJAG00000016210	KNOWN	protein_coding	RASGEF1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	30930873	31002832	R	Ras-GEF domain-containing family member 1A {ECO:0000313|EMBL:JAB16567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029880}  [Source:UniProtKB/TrEMBL;Acc:F7INW7]
ENSCJAG00000017781	NOVEL	protein_coding	ENSCJAG00000017781	chromosome:C_jacchus3.2.1:5:1:159171411:1	38437748	38443676	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032794}  [Source:UniProtKB/TrEMBL;Acc:F7FVW7]
ENSCJAG00000017787	KNOWN	protein_coding	FITM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	38422738	38427654	R	Fat storage-inducing transmembrane protein 2 {ECO:0000313|EMBL:JAB01748.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032798}  [Source:UniProtKB/TrEMBL;Acc:F7FVV3]
ENSCJAG00000034287	NOVEL	pseudogene	ENSCJAG00000034287	chromosome:C_jacchus3.2.1:11:1:130397257:1	45831596	45832059	D	<no descrition>
ENSCJAG00000034920	NOVEL	pseudogene	ENSCJAG00000034920	chromosome:C_jacchus3.2.1:11:1:130397257:1	45535661	45535998	D	<no descrition>
ENSCJAG00000016195	KNOWN	protein_coding	CSGALNACT2	chromosome:C_jacchus3.2.1:12:1:121768101:1	30894278	30922190	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029839}  [Source:UniProtKB/TrEMBL;Acc:F7HKL0]
ENSCJAG00000000918	NOVEL	protein_coding	ENSCJAG00000000918	chromosome:C_jacchus3.2.1:11:1:130397257:1	45504522	45505282	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001554}  [Source:UniProtKB/TrEMBL;Acc:F6ZG53]
ENSCJAG00000022171	NOVEL	pseudogene	ENSCJAG00000022171	chromosome:C_jacchus3.2.1:11:1:130397257:1	45114677	45116338	R	<no descrition>
ENSCJAG00000020477	KNOWN_BY_PROJECTION	protein_coding	ROCK1	chromosome:C_jacchus3.2.1:13:1:117903854:1	58087587	58267138	R	Rho-associated, coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]
ENSCJAG00000003319	KNOWN	protein_coding	PSAT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	90105105	90140123	R	Phosphoserine aminotransferase {ECO:0000256|RuleBase:RU004505}  [Source:UniProtKB/TrEMBL;Acc:F7H1S9]
ENSCJAG00000010893	KNOWN	protein_coding	FAM105A	chromosome:C_jacchus3.2.1:2:1:204313951:1	188941633	188970597	R	Protein FAM105A {ECO:0000313|EMBL:JAB03948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020094}  [Source:UniProtKB/TrEMBL;Acc:F7H7E8]
ENSCJAG00000003443	KNOWN_BY_PROJECTION	protein_coding	NDST4	chromosome:C_jacchus3.2.1:3:1:190850796:1	78471358	78789996	D	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 [Source:HGNC Symbol;Acc:HGNC:20779]
ENSCJAG00000014562	KNOWN	protein_coding	AARS	chromosome:C_jacchus3.2.1:20:1:44557958:1	28106587	28140560	D	Alanine--tRNA ligase, cytoplasmic {ECO:0000256|HAMAP-Rule:MF_03133}  [Source:UniProtKB/TrEMBL;Acc:F7I4E1]
ENSCJAG00000010884	KNOWN	protein_coding	FAM105B	chromosome:C_jacchus3.2.1:2:1:204313951:1	188845122	188878371	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020069}  [Source:UniProtKB/TrEMBL;Acc:F7HHP4]
ENSCJAG00000010881	NOVEL	pseudogene	ENSCJAG00000010881	chromosome:C_jacchus3.2.1:2:1:204313951:1	188822889	188823235	R	<no descrition>
ENSCJAG00000011067	KNOWN_BY_PROJECTION	protein_coding	FAT3	chromosome:C_jacchus3.2.1:11:1:130397257:1	44970272	45519792	R	FAT atypical cadherin 3 [Source:HGNC Symbol;Acc:HGNC:23112]
ENSCJAG00000011620	KNOWN_BY_PROJECTION	protein_coding	MYL6B	chromosome:C_jacchus3.2.1:9:1:124281992:1	44899843	44908515	D	myosin, light chain 6B, alkali, smooth muscle and non-muscle [Source:HGNC Symbol;Acc:HGNC:29823]
ENSCJAG00000017789	KNOWN_BY_PROJECTION	protein_coding	GDAP1L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	38377069	38409408	D	ganglioside induced differentiation associated protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:4213]
ENSCJAG00000031497	NOVEL	pseudogene	ENSCJAG00000031497	chromosome:C_jacchus3.2.1:3:1:190850796:1	78431962	78432482	D	<no descrition>
ENSCJAG00000010839	KNOWN	protein_coding	ANKH	chromosome:C_jacchus3.2.1:2:1:204313951:1	188661435	188833906	D	Progressive ankylosis protein homolog {ECO:0000313|EMBL:JAB05240.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020048}  [Source:UniProtKB/TrEMBL;Acc:F7D3S3]
ENSCJAG00000020464	KNOWN	protein_coding	USP14	chromosome:C_jacchus3.2.1:13:1:117903854:1	57993465	58049072	R	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7HKD8]
ENSCJAG00000020715	NOVEL	pseudogene	ENSCJAG00000020715	chromosome:C_jacchus3.2.1:3:1:190850796:1	78430486	78431459	D	<no descrition>
ENSCJAG00000003416	NOVEL	pseudogene	ENSCJAG00000003416	chromosome:C_jacchus3.2.1:1:1:210400635:1	88782389	88783208	D	<no descrition>
ENSCJAG00000017794	KNOWN	protein_coding	OSER1	chromosome:C_jacchus3.2.1:5:1:159171411:1	38327207	38341637	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032823}; Uncharacterized protein C20orf111 {ECO:0000313|EMBL:JAB01768.1}  [Source:UniProtKB/TrEMBL;Acc:F7EQ63]
ENSCJAG00000001986	NOVEL	pseudogene	ENSCJAG00000001986	chromosome:C_jacchus3.2.1:3:1:190850796:1	78419199	78419670	D	<no descrition>
ENSCJAG00000036636	NOVEL	protein_coding	ENSCJAG00000036636	chromosome:C_jacchus3.2.1:1:1:210400635:1	88740703	88741919	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045089}  [Source:UniProtKB/TrEMBL;Acc:F6T847]
ENSCJAG00000011122	NOVEL	pseudogene	ENSCJAG00000011122	chromosome:C_jacchus3.2.1:11:1:130397257:1	44960688	44961469	D	<no descrition>
ENSCJAG00000035021	NOVEL	protein_coding	ENSCJAG00000035021	chromosome:C_jacchus3.2.1:13:1:117903854:1	57936785	57938108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051770}  [Source:UniProtKB/TrEMBL;Acc:F7AZI7]
ENSCJAG00000010823	KNOWN_BY_PROJECTION	protein_coding	FBXL7	chromosome:C_jacchus3.2.1:2:1:204313951:1	187499141	187510805	R	F-box and leucine-rich repeat protein 7 [Source:HGNC Symbol;Acc:HGNC:13604]
ENSCJAG00000012064	KNOWN_BY_PROJECTION	protein_coding	MARCH11	chromosome:C_jacchus3.2.1:2:1:204313951:1	187209830	187337816	D	membrane-associated ring finger (C3HC4) 11 [Source:HGNC Symbol;Acc:HGNC:33609]
ENSCJAG00000017802	KNOWN	protein_coding	JPH2	chromosome:C_jacchus3.2.1:5:1:159171411:1	38238886	38318467	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032826}  [Source:UniProtKB/TrEMBL;Acc:F7EQ24]
ENSCJAG00000002551	NOVEL	pseudogene	ENSCJAG00000002551	chromosome:C_jacchus3.2.1:2:1:204313951:1	186955881	186956242	D	<no descrition>
ENSCJAG00000011030	KNOWN	protein_coding	SLC36A4	chromosome:C_jacchus3.2.1:11:1:130397257:1	44708343	44755669	D	Proton-coupled amino acid transporter 4 {ECO:0000313|EMBL:JAB07790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020407}  [Source:UniProtKB/TrEMBL;Acc:F7F5P6]
ENSCJAG00000012047	KNOWN	protein_coding	ZNF622	chromosome:C_jacchus3.2.1:2:1:204313951:1	186890227	186904483	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022146}; Zinc finger protein 622 {ECO:0000313|EMBL:JAB02578.1}  [Source:UniProtKB/TrEMBL;Acc:F6XP45]
ENSCJAG00000031968	NOVEL	protein_coding	ENSCJAG00000031968	chromosome:C_jacchus3.2.1:11:1:130397257:1	44618573	44620850	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043005}  [Source:UniProtKB/TrEMBL;Acc:F7I123]
ENSCJAG00000016166	KNOWN_BY_PROJECTION	protein_coding	RET	chromosome:C_jacchus3.2.1:12:1:121768101:1	30817366	30869606	D	ret proto-oncogene [Source:HGNC Symbol;Acc:HGNC:9967]
ENSCJAG00000017806	KNOWN	protein_coding	KLRD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	38015069	38192548	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032863}  [Source:UniProtKB/TrEMBL;Acc:F7DH52]
ENSCJAG00000020450	KNOWN	protein_coding	THOC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	57934339	57991270	D	THO complex subunit 1 {ECO:0000313|EMBL:JAB04330.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038021}  [Source:UniProtKB/TrEMBL;Acc:F7HVG3]
ENSCJAG00000003734	KNOWN_BY_PROJECTION	protein_coding	CCDC67	chromosome:C_jacchus3.2.1:11:1:130397257:1	44383512	44479974	R	coiled-coil domain containing 67 [Source:HGNC Symbol;Acc:HGNC:26344]
ENSCJAG00000012033	KNOWN	protein_coding	FAM134B	chromosome:C_jacchus3.2.1:2:1:204313951:1	186734478	186882739	D	Protein FAM134B isoform 2 {ECO:0000313|EMBL:JAB21652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044802}  [Source:UniProtKB/TrEMBL;Acc:F7ECF2]
ENSCJAG00000016155	NOVEL	protein_coding	ENSCJAG00000016155	chromosome:C_jacchus3.2.1:12:1:121768101:1	30581684	30590838	D	<no descrition>
ENSCJAG00000012027	NOVEL	protein_coding	ENSCJAG00000012027	chromosome:C_jacchus3.2.1:2:1:204313951:1	186624375	186625435	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048115}  [Source:UniProtKB/TrEMBL;Acc:F7HJD4]
ENSCJAG00000000146	KNOWN	protein_coding	COLEC12	chromosome:C_jacchus3.2.1:13:1:117903854:1	57694083	57883546	D	Collectin-12 {ECO:0000313|EMBL:JAB11494.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000243}  [Source:UniProtKB/TrEMBL;Acc:F7GTA4]
ENSCJAG00000003746	KNOWN	protein_coding	SMCO4	chromosome:C_jacchus3.2.1:11:1:130397257:1	44290814	44356686	D	UPF0443 protein C11orf75 {ECO:0000313|EMBL:JAB28514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006784}  [Source:UniProtKB/TrEMBL;Acc:F7EBM6]
ENSCJAG00000000140	KNOWN_BY_PROJECTION	protein_coding	CLUL1	chromosome:C_jacchus3.2.1:13:1:117903854:1	57545589	57580985	R	clusterin-like 1 (retinal) [Source:HGNC Symbol;Acc:HGNC:2096]
ENSCJAG00000000137	NOVEL	pseudogene	ENSCJAG00000000137	chromosome:C_jacchus3.2.1:13:1:117903854:1	57531338	57531639	D	<no descrition>
ENSCJAG00000003748	KNOWN_BY_PROJECTION	protein_coding	CEP295	chromosome:C_jacchus3.2.1:11:1:130397257:1	44110507	44197341	R	centrosomal protein 295kDa [Source:HGNC Symbol;Acc:HGNC:29366]
ENSCJAG00000003390	KNOWN_BY_PROJECTION	protein_coding	NDST3	chromosome:C_jacchus3.2.1:3:1:190850796:1	75355664	75560502	R	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 [Source:HGNC Symbol;Acc:HGNC:7682]
ENSCJAG00000017819	NOVEL	protein_coding	ENSCJAG00000017819	chromosome:C_jacchus3.2.1:5:1:159171411:1	37792794	37831970	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032894}  [Source:UniProtKB/TrEMBL;Acc:F7HGH0]
ENSCJAG00000003791	KNOWN_BY_PROJECTION	protein_coding	C11orf54	chromosome:C_jacchus3.2.1:11:1:130397257:1	44076799	44098309	R	chromosome 11 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:30204]
ENSCJAG00000011445	NOVEL	protein_coding	ENSCJAG00000011445	chromosome:C_jacchus3.2.1:12:1:121768101:1	29398155	29413647	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021056}  [Source:UniProtKB/TrEMBL;Acc:F6U6F7]
ENSCJAG00000000111	KNOWN	protein_coding	ENOSF1	chromosome:C_jacchus3.2.1:13:1:117903854:1	57475574	57519574	D	Mitochondrial enolase superfamily member 1 isoform rTSbeta {ECO:0000313|EMBL:JAB02701.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000203}  [Source:UniProtKB/TrEMBL;Acc:F7GYD6]
ENSCJAG00000003386	KNOWN_BY_PROJECTION	protein_coding	PRSS12	chromosome:C_jacchus3.2.1:3:1:190850796:1	75233911	75318165	D	protease, serine, 12 (neurotrypsin, motopsin) [Source:HGNC Symbol;Acc:HGNC:9477]
ENSCJAG00000018254	KNOWN	protein_coding	HEXA	chromosome:C_jacchus3.2.1:10:1:132174527:1	14768832	14797807	R	Beta-hexosaminidase {ECO:0000256|PIRNR:PIRNR001093}  [Source:UniProtKB/TrEMBL;Acc:F6TCZ5]
ENSCJAG00000003782	KNOWN	protein_coding	TAF1D	chromosome:C_jacchus3.2.1:11:1:130397257:1	44057540	44104653	D	TATA box-binding protein-associated factor RNA polymerase I subunit D {ECO:0000313|EMBL:JAB08935.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006861}  [Source:UniProtKB/TrEMBL;Acc:F7CXL0]
ENSCJAG00000014587	KNOWN	protein_coding	DDX19B	chromosome:C_jacchus3.2.1:20:1:44557958:1	28026939	28180646	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044410}  [Source:UniProtKB/TrEMBL;Acc:F7DZT8]
ENSCJAG00000003361	KNOWN	protein_coding	METTL14	chromosome:C_jacchus3.2.1:3:1:190850796:1	75131358	75157228	R	Methyltransferase-like protein 14 {ECO:0000313|EMBL:JAB03775.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006136}  [Source:UniProtKB/TrEMBL;Acc:F7ESI1]
ENSCJAG00000000125	KNOWN	protein_coding	TYMS	chromosome:C_jacchus3.2.1:13:1:117903854:1	57419227	57531858	R	Thymidylate synthase {ECO:0000313|EMBL:JAB03966.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000232}  [Source:UniProtKB/TrEMBL;Acc:F7GTE7]
ENSCJAG00000011638	KNOWN	protein_coding	ESYT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	44872248	44890022	D	Extended synaptotagmin-1 isoform 2 {ECO:0000313|EMBL:JAB08949.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021655}  [Source:UniProtKB/TrEMBL;Acc:F6R926]
ENSCJAG00000003336	KNOWN_BY_PROJECTION	protein_coding	TLE4	chromosome:C_jacchus3.2.1:1:1:210400635:1	88740699	88892033	R	transducin-like enhancer of split 4 [Source:HGNC Symbol;Acc:HGNC:11840]
ENSCJAG00000000099	KNOWN	protein_coding	YES1	chromosome:C_jacchus3.2.1:13:1:117903854:1	57356663	57463956	D	Tyrosine-protein kinase Yes {ECO:0000313|EMBL:JAB09388.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000177}  [Source:UniProtKB/TrEMBL;Acc:F7E686]
ENSCJAG00000002493	KNOWN	protein_coding	SLC44A4	chromosome:C_jacchus3.2.1:4:1:171630274:1	32435851	32455649	R	Choline transporter-like protein 4 isoform 1 {ECO:0000313|EMBL:JAB05737.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034605}  [Source:UniProtKB/TrEMBL;Acc:F7HWM4]
ENSCJAG00000000097	KNOWN	protein_coding	ADCYAP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	57236553	57242528	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000170}  [Source:UniProtKB/TrEMBL;Acc:F7E6F0]
ENSCJAG00000034347	NOVEL	pseudogene	ENSCJAG00000034347	chromosome:C_jacchus3.2.1:13:1:117903854:1	56925223	56925449	D	<no descrition>
ENSCJAG00000000095	NOVEL	protein_coding	ENSCJAG00000000095	chromosome:C_jacchus3.2.1:13:1:117903854:1	56601112	56602088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000165}  [Source:UniProtKB/TrEMBL;Acc:F7E6Q7]
ENSCJAG00000000092	KNOWN	protein_coding	METTL4	chromosome:C_jacchus3.2.1:13:1:117903854:1	55281906	55315312	D	Methyltransferase-like protein 4 {ECO:0000313|EMBL:JAB03746.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050245}  [Source:UniProtKB/TrEMBL;Acc:F7EZI7]
ENSCJAG00000031709	NOVEL	protein_coding	ENSCJAG00000031709	chromosome:C_jacchus3.2.1:13:1:117903854:1	55295022	55295550	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000868}  [Source:UniProtKB/TrEMBL;Acc:F6PMD5]
ENSCJAG00000011803	KNOWN	protein_coding	ZC3H10	chromosome:C_jacchus3.2.1:9:1:124281992:1	44861513	44865820	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046613}  [Source:UniProtKB/TrEMBL;Acc:F7HMW8]
ENSCJAG00000011806	NOVEL	protein_coding	ENSCJAG00000011806	chromosome:C_jacchus3.2.1:9:1:124281992:1	44859849	44861097	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021669}  [Source:UniProtKB/TrEMBL;Acc:F6QYV7]
ENSCJAG00000003839	KNOWN	protein_coding	MED17	chromosome:C_jacchus3.2.1:11:1:130397257:1	44034923	44062485	R	Mediator of RNA polymerase II transcription subunit 17 {ECO:0000313|EMBL:JAB10320.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006996}  [Source:UniProtKB/TrEMBL;Acc:F7GQ75]
ENSCJAG00000000078	KNOWN_BY_PROJECTION	protein_coding	NDC80	chromosome:C_jacchus3.2.1:13:1:117903854:1	55234857	55281884	R	NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]
ENSCJAG00000003861	KNOWN_BY_PROJECTION	protein_coding	VSTM5	chromosome:C_jacchus3.2.1:11:1:130397257:1	43991927	44027008	D	V-set and transmembrane domain containing 5 [Source:HGNC Symbol;Acc:HGNC:34443]
ENSCJAG00000031168	NOVEL	protein_coding	ENSCJAG00000031168	chromosome:C_jacchus3.2.1:1:1:210400635:1	88712848	88714082	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048455}  [Source:UniProtKB/TrEMBL;Acc:F7HIL6]
ENSCJAG00000017838	KNOWN	protein_coding	IFT52	chromosome:C_jacchus3.2.1:5:1:159171411:1	37718577	37767661	D	Intraflagellar transport protein 52 homolog {ECO:0000313|EMBL:JAB07779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032960}  [Source:UniProtKB/TrEMBL;Acc:F7GIS5]
ENSCJAG00000003866	KNOWN_BY_PROJECTION	protein_coding	MLC1	chromosome:C_jacchus3.2.1:11:1:130397257:1	43939496	43964815	R	megalencephalic leukoencephalopathy with subcortical cysts 1 [Source:HGNC Symbol;Acc:HGNC:17082]
ENSCJAG00000000071	KNOWN_BY_PROJECTION	protein_coding	SMCHD1	chromosome:C_jacchus3.2.1:13:1:117903854:1	55052466	55187734	R	structural maintenance of chromosomes flexible hinge domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29090]
ENSCJAG00000014673	KNOWN	protein_coding	ST3GAL2	chromosome:C_jacchus3.2.1:20:1:44557958:1	27998801	28016829	D	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 {ECO:0000313|EMBL:JAB02378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027010}  [Source:UniProtKB/TrEMBL;Acc:F7G766]
ENSCJAG00000003220	KNOWN	protein_coding	CD11C	chromosome:C_jacchus3.2.1:12:1:121768101:1	29225847	29321319	D	Callithrix jacchus integrin, alpha X (complement component 3 receptor 4 subunit) (ITGAX), mRNA. [Source:RefSeq mRNA;Acc:NM_001267739]
ENSCJAG00000017869	KNOWN_BY_PROJECTION	protein_coding	SGK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	37680858	37707968	D	serum/glucocorticoid regulated kinase 2 [Source:HGNC Symbol;Acc:HGNC:13900]
ENSCJAG00000011831	KNOWN	protein_coding	MYO10	chromosome:C_jacchus3.2.1:2:1:204313951:1	186403901	186685261	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022049}  [Source:UniProtKB/TrEMBL;Acc:F7AV78]
ENSCJAG00000012955	KNOWN_BY_PROJECTION	protein_coding	EMILIN2	chromosome:C_jacchus3.2.1:13:1:117903854:1	54903219	54965873	R	elastin microfibril interfacer 2 [Source:HGNC Symbol;Acc:HGNC:19881]
ENSCJAG00000003906	KNOWN_BY_PROJECTION	protein_coding	HEPHL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	43657993	43738070	R	hephaestin-like 1 [Source:HGNC Symbol;Acc:HGNC:30477]
ENSCJAG00000003964	KNOWN_BY_PROJECTION	protein_coding	L3MBTL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	37628227	37662424	D	l(3)mbt-like 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:15905]
ENSCJAG00000012946	KNOWN	protein_coding	LPIN2	chromosome:C_jacchus3.2.1:13:1:117903854:1	54858327	54896909	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023737}  [Source:UniProtKB/TrEMBL;Acc:F7G060]
ENSCJAG00000003952	KNOWN_BY_PROJECTION	protein_coding	PANX1	chromosome:C_jacchus3.2.1:11:1:130397257:1	43585287	43648938	R	pannexin 1 [Source:HGNC Symbol;Acc:HGNC:8599]
ENSCJAG00000012917	KNOWN_BY_PROJECTION	protein_coding	MYOM1	chromosome:C_jacchus3.2.1:13:1:117903854:1	54679667	54760173	D	myomesin 1 [Source:HGNC Symbol;Acc:HGNC:7613]
ENSCJAG00000017888	KNOWN	protein_coding	SRSF6	chromosome:C_jacchus3.2.1:5:1:159171411:1	37577932	37581619	D	Serine/arginine-rich splicing factor 6 {ECO:0000313|EMBL:JAB06290.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033052}  [Source:UniProtKB/TrEMBL;Acc:F6TV78]
ENSCJAG00000003192	KNOWN_BY_PROJECTION	protein_coding	TRIM72	chromosome:C_jacchus3.2.1:12:1:121768101:1	29166044	29178947	D	tripartite motif containing 72, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:32671]
ENSCJAG00000003960	KNOWN_BY_PROJECTION	protein_coding	IZUMO1R	chromosome:C_jacchus3.2.1:11:1:130397257:1	43478345	43480412	R	IZUMO1 receptor, JUNO [Source:HGNC Symbol;Acc:HGNC:32565]
ENSCJAG00000003972	KNOWN_BY_PROJECTION	protein_coding	GPR83	chromosome:C_jacchus3.2.1:11:1:130397257:1	43392703	43402588	D	G protein-coupled receptor 83 [Source:HGNC Symbol;Acc:HGNC:4523]
ENSCJAG00000038151	KNOWN_BY_PROJECTION	protein_coding	MYL12A	chromosome:C_jacchus3.2.1:13:1:117903854:1	54586722	54595079	R	myosin, light chain 12A, regulatory, non-sarcomeric [Source:HGNC Symbol;Acc:HGNC:16701]
ENSCJAG00000004069	KNOWN	protein_coding	ANKRD49	chromosome:C_jacchus3.2.1:11:1:130397257:1	43282152	43287677	R	Ankyrin repeat domain-containing protein 49 {ECO:0000313|EMBL:JAB03586.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007398}  [Source:UniProtKB/TrEMBL;Acc:F6QE21]
ENSCJAG00000035540	KNOWN	protein_coding	MYL12B	chromosome:C_jacchus3.2.1:13:1:117903854:1	54562532	54579883	R	Myosin regulatory light chain 12B {ECO:0000313|EMBL:JAB18501.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043194}  [Source:UniProtKB/TrEMBL;Acc:F7IJT9]
ENSCJAG00000038058	KNOWN_BY_PROJECTION	protein_coding	FUT4	chromosome:C_jacchus3.2.1:11:1:130397257:1	43244475	43247352	R	fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) [Source:HGNC Symbol;Acc:HGNC:4015]
ENSCJAG00000012887	NOVEL	pseudogene	ENSCJAG00000012887	chromosome:C_jacchus3.2.1:13:1:117903854:1	54498922	54500429	D	<no descrition>
ENSCJAG00000012865	KNOWN	protein_coding	TGIF1	chromosome:C_jacchus3.2.1:13:1:117903854:1	54346793	54399697	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043626}  [Source:UniProtKB/TrEMBL;Acc:F7ICE8]
ENSCJAG00000012862	NOVEL	pseudogene	ENSCJAG00000012862	chromosome:C_jacchus3.2.1:13:1:117903854:1	54180490	54180755	R	<no descrition>
ENSCJAG00000012856	KNOWN	protein_coding	DLGAP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	54057416	54302432	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023549}  [Source:UniProtKB/TrEMBL;Acc:F7I6B6]
ENSCJAG00000014678	KNOWN	protein_coding	FUK	chromosome:C_jacchus3.2.1:20:1:44557958:1	27908057	27931237	R	L-fucose kinase {ECO:0000313|EMBL:JAB04685.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027038}  [Source:UniProtKB/TrEMBL;Acc:F7FU98]
ENSCJAG00000034657	NOVEL	pseudogene	ENSCJAG00000034657	chromosome:C_jacchus3.2.1:13:1:117903854:1	53259496	53259733	R	<no descrition>
ENSCJAG00000023098	KNOWN	protein_coding	C18ORF42	chromosome:C_jacchus3.2.1:13:1:117903854:1	52388599	52450105	D	Uncharacterized protein {ECO:0000313|EMBL:JAB23705.1, ECO:0000313|Ensembl:ENSCJAP00000041631}  [Source:UniProtKB/TrEMBL;Acc:F7DE14]
ENSCJAG00000015781	NOVEL	protein_coding	ENSCJAG00000015781	chromosome:C_jacchus3.2.1:13:1:117903854:1	52344047	52348018	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029044}  [Source:UniProtKB/TrEMBL;Acc:F7HM17]
ENSCJAG00000037461	KNOWN	protein_coding	ZBTB14	chromosome:C_jacchus3.2.1:13:1:117903854:1	52283758	52288183	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029042}; Zinc finger protein 161 homolog {ECO:0000313|EMBL:JAB01848.1}  [Source:UniProtKB/TrEMBL;Acc:F7HM25]
ENSCJAG00000003283	KNOWN	protein_coding	SEC24D	chromosome:C_jacchus3.2.1:3:1:190850796:1	75020564	75124402	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006091}  [Source:UniProtKB/TrEMBL;Acc:F7G9S1]
ENSCJAG00000003424	KNOWN	protein_coding	TLE1	chromosome:C_jacchus3.2.1:1:1:210400635:1	86757023	86856830	D	Transducin-like enhancer protein 1 {ECO:0000313|EMBL:JAB07296.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006318}  [Source:UniProtKB/TrEMBL;Acc:F7F4Y6]
ENSCJAG00000017913	KNOWN_BY_PROJECTION	protein_coding	PTPRT	chromosome:C_jacchus3.2.1:5:1:159171411:1	36098164	36523513	R	protein tyrosine phosphatase, receptor type, T [Source:HGNC Symbol;Acc:HGNC:9682]
ENSCJAG00000018355	KNOWN	protein_coding	CELF6	chromosome:C_jacchus3.2.1:10:1:132174527:1	14712386	14747856	R	CUGBP Elav-like family member 6 isoform 2 {ECO:0000313|EMBL:JAB14128.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034050}  [Source:UniProtKB/TrEMBL;Acc:F6ZUM6]
ENSCJAG00000003190	KNOWN	protein_coding	PYCARD	chromosome:C_jacchus3.2.1:12:1:121768101:1	29146235	29168845	R	Pyrin domain-containing protein 1 {ECO:0000313|EMBL:JAB34496.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046870}  [Source:UniProtKB/TrEMBL;Acc:F7IK24]
ENSCJAG00000003260	KNOWN	protein_coding	MYOZ2	chromosome:C_jacchus3.2.1:3:1:190850796:1	74679810	74731815	R	Myozenin-2 {ECO:0000313|EMBL:JAB36987.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005940}  [Source:UniProtKB/TrEMBL;Acc:F7IED9]
ENSCJAG00000003486	NOVEL	protein_coding	ENSCJAG00000003486	chromosome:C_jacchus3.2.1:1:1:210400635:1	86741489	86741894	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006333}  [Source:UniProtKB/TrEMBL;Acc:F7ERW5]
ENSCJAG00000015728	NOVEL	protein_coding	ENSCJAG00000015728	chromosome:C_jacchus3.2.1:13:1:117903854:1	51985057	52287306	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018259}  [Source:UniProtKB/TrEMBL;Acc:F7GJS5]
ENSCJAG00000011826	KNOWN	protein_coding	BASP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	186065101	186128417	R	Brain acid soluble protein 1 {ECO:0000313|EMBL:JAB04699.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021703}  [Source:UniProtKB/TrEMBL;Acc:F6PRD3]
ENSCJAG00000011821	NOVEL	pseudogene	ENSCJAG00000011821	chromosome:C_jacchus3.2.1:2:1:204313951:1	186033801	186034375	R	<no descrition>
ENSCJAG00000003488	KNOWN_BY_PROJECTION	protein_coding	HMG20B	chromosome:C_jacchus3.2.1:1:1:210400635:1	86635105	86658002	D	high mobility group 20B [Source:HGNC Symbol;Acc:HGNC:5002]
ENSCJAG00000011820	NOVEL	pseudogene	ENSCJAG00000011820	chromosome:C_jacchus3.2.1:2:1:204313951:1	185820244	185820781	R	<no descrition>
ENSCJAG00000033957	NOVEL	protein_coding	ENSCJAG00000033957	chromosome:C_jacchus3.2.1:2:1:204313951:1	185801957	185830681	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044380}  [Source:UniProtKB/TrEMBL;Acc:F7FIR6]
ENSCJAG00000011816	NOVEL	pseudogene	ENSCJAG00000011816	chromosome:C_jacchus3.2.1:2:1:204313951:1	184243082	184243970	D	<no descrition>
ENSCJAG00000033394	NOVEL	protein_coding	ENSCJAG00000033394	chromosome:C_jacchus3.2.1:1:1:210400635:1	86596592	86599519	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043781}  [Source:UniProtKB/TrEMBL;Acc:F7IP46]
ENSCJAG00000011808	KNOWN_BY_PROJECTION	protein_coding	CDH18	chromosome:C_jacchus3.2.1:2:1:204313951:1	183871103	183993398	D	cadherin 18, type 2 [Source:HGNC Symbol;Acc:HGNC:1757]
ENSCJAG00000003169	KNOWN_BY_PROJECTION	protein_coding	FUS	chromosome:C_jacchus3.2.1:12:1:121768101:1	29124351	29134868	D	FUS RNA binding protein [Source:HGNC Symbol;Acc:HGNC:4010]
ENSCJAG00000032612	NOVEL	protein_coding	ENSCJAG00000032612	chromosome:C_jacchus3.2.1:2:1:204313951:1	182726389	182727677	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031569}  [Source:UniProtKB/TrEMBL;Acc:F7HLK8]
ENSCJAG00000017920	KNOWN_BY_PROJECTION	protein_coding	CHD6	chromosome:C_jacchus3.2.1:5:1:159171411:1	35427678	35635625	R	chromodomain helicase DNA binding protein 6 [Source:HGNC Symbol;Acc:HGNC:19057]
ENSCJAG00000022764	NOVEL	pseudogene	ENSCJAG00000022764	chromosome:C_jacchus3.2.1:2:1:204313951:1	182310587	182311688	R	<no descrition>
ENSCJAG00000036139	KNOWN	protein_coding	NEU1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32435520	32439555	R	Sialidase-1 {ECO:0000313|EMBL:JAB04786.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004619}  [Source:UniProtKB/TrEMBL;Acc:F6YMA5]
ENSCJAG00000004075	KNOWN_BY_PROJECTION	protein_coding	PIWIL4	chromosome:C_jacchus3.2.1:11:1:130397257:1	43163169	43247473	R	piwi-like RNA-mediated gene silencing 4 [Source:HGNC Symbol;Acc:HGNC:18444]
ENSCJAG00000017981	KNOWN_BY_PROJECTION	protein_coding	EMILIN3	chromosome:C_jacchus3.2.1:5:1:159171411:1	35382573	35390459	R	elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
ENSCJAG00000003503	NOVEL	protein_coding	ENSCJAG00000003503	chromosome:C_jacchus3.2.1:1:1:210400635:1	86589276	86590649	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F7ED05]
ENSCJAG00000003505	NOVEL	pseudogene	ENSCJAG00000003505	chromosome:C_jacchus3.2.1:1:1:210400635:1	86554359	86555797	R	<no descrition>
ENSCJAG00000004122	NOVEL	protein_coding	ENSCJAG00000004122	chromosome:C_jacchus3.2.1:11:1:130397257:1	43131293	43132347	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007489}  [Source:UniProtKB/TrEMBL;Acc:F6T390]
ENSCJAG00000017986	KNOWN_BY_PROJECTION	protein_coding	LPIN3	chromosome:C_jacchus3.2.1:5:1:159171411:1	35368686	35382873	D	lipin 3 [Source:HGNC Symbol;Acc:HGNC:14451]
ENSCJAG00000003512	NOVEL	protein_coding	ENSCJAG00000003512	chromosome:C_jacchus3.2.1:1:1:210400635:1	86475849	86476383	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006372}  [Source:UniProtKB/TrEMBL;Acc:F7DZ04]
ENSCJAG00000003513	NOVEL	pseudogene	ENSCJAG00000003513	chromosome:C_jacchus3.2.1:1:1:210400635:1	86404973	86406135	D	<no descrition>
ENSCJAG00000032360	KNOWN_BY_PROJECTION	protein_coding	ZNF628	chromosome:C_jacchus3.2.1:1:1:210400635:1	86402931	86404818	R	zinc finger protein 628 [Source:HGNC Symbol;Acc:HGNC:28054]
ENSCJAG00000011760	KNOWN	protein_coding	CDH12	chromosome:C_jacchus3.2.1:2:1:204313951:1	180950002	181733662	D	Cadherin-12 preproprotein {ECO:0000313|EMBL:JAB15471.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044167}  [Source:UniProtKB/TrEMBL;Acc:F7FYA3]
ENSCJAG00000003518	NOVEL	protein_coding	ENSCJAG00000003518	chromosome:C_jacchus3.2.1:1:1:210400635:1	86268642	86270072	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006380}  [Source:UniProtKB/TrEMBL;Acc:F7DIJ9]
ENSCJAG00000018012	KNOWN	protein_coding	ZHX3	chromosome:C_jacchus3.2.1:5:1:159171411:1	35202617	35324930	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033262}; Zinc fingers and homeoboxes protein 3 {ECO:0000313|EMBL:JAB03479.1}  [Source:UniProtKB/TrEMBL;Acc:F6QSD4]
ENSCJAG00000003523	NOVEL	protein_coding	ENSCJAG00000003523	chromosome:C_jacchus3.2.1:1:1:210400635:1	86256014	86257523	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006398}  [Source:UniProtKB/TrEMBL;Acc:F7D0G0]
ENSCJAG00000011811	NOVEL	protein_coding	ENSCJAG00000011811	chromosome:C_jacchus3.2.1:9:1:124281992:1	44844651	44855211	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021898}  [Source:UniProtKB/TrEMBL;Acc:F6QBY8]
ENSCJAG00000031474	NOVEL	protein_coding	ENSCJAG00000031474	chromosome:C_jacchus3.2.1:1:1:210400635:1	86051434	86053990	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046348}  [Source:UniProtKB/TrEMBL;Acc:F6WZT9]
ENSCJAG00000003533	KNOWN_BY_PROJECTION	protein_coding	C6orf132	chromosome:C_jacchus3.2.1:1:1:210400635:1	85990172	85991522	R	chromosome 6 open reading frame 132 [Source:HGNC Symbol;Acc:HGNC:21288]
ENSCJAG00000003536	NOVEL	protein_coding	ENSCJAG00000003536	chromosome:C_jacchus3.2.1:1:1:210400635:1	85925932	85931938	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006407}  [Source:UniProtKB/TrEMBL;Acc:F7HBH3]
ENSCJAG00000003541	NOVEL	pseudogene	ENSCJAG00000003541	chromosome:C_jacchus3.2.1:1:1:210400635:1	85803018	85803375	D	<no descrition>
ENSCJAG00000035442	NOVEL	pseudogene	ENSCJAG00000035442	chromosome:C_jacchus3.2.1:13:1:117903854:1	51631880	51632521	D	<no descrition>
ENSCJAG00000003544	NOVEL	protein_coding	ENSCJAG00000003544	chromosome:C_jacchus3.2.1:1:1:210400635:1	85723430	85724008	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006417}  [Source:UniProtKB/TrEMBL;Acc:F7H6G4]
ENSCJAG00000011751	NOVEL	protein_coding	ENSCJAG00000011751	chromosome:C_jacchus3.2.1:2:1:204313951:1	180641107	180642308	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052238}  [Source:UniProtKB/TrEMBL;Acc:F7ILE6]
ENSCJAG00000015716	KNOWN_BY_PROJECTION	protein_coding	L3MBTL4	chromosome:C_jacchus3.2.1:13:1:117903854:1	51180429	51558490	D	l(3)mbt-like 4 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:26677]
ENSCJAG00000011740	NOVEL	pseudogene	ENSCJAG00000011740	chromosome:C_jacchus3.2.1:2:1:204313951:1	179205911	179207270	R	<no descrition>
ENSCJAG00000023104	NOVEL	pseudogene	ENSCJAG00000023104	chromosome:C_jacchus3.2.1:13:1:117903854:1	51023112	51024594	R	<no descrition>
ENSCJAG00000022393	NOVEL	pseudogene	ENSCJAG00000022393	chromosome:C_jacchus3.2.1:13:1:117903854:1	50577928	50579120	D	<no descrition>
ENSCJAG00000003234	KNOWN	protein_coding	USP53	chromosome:C_jacchus3.2.1:3:1:190850796:1	74577650	74638588	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005920}  [Source:UniProtKB/TrEMBL;Acc:F7IGQ9]
ENSCJAG00000003984	KNOWN	protein_coding	MRE11A	chromosome:C_jacchus3.2.1:11:1:130397257:1	42995065	43377492	D	Double-strand break repair protein MRE11A isoform 2 {ECO:0000313|EMBL:JAB28549.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042376}  [Source:UniProtKB/TrEMBL;Acc:F6UK39]
ENSCJAG00000002565	KNOWN	protein_coding	ENSCJAG00000002565	chromosome:C_jacchus3.2.1:4:1:171630274:1	32385776	32575776	D	Heat shock 70 kDa protein 1A/1B {ECO:0000313|EMBL:JAB27451.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004684}  [Source:UniProtKB/TrEMBL;Acc:F6W7H3]
ENSCJAG00000003231	KNOWN_BY_PROJECTION	protein_coding	C4orf3	chromosome:C_jacchus3.2.1:3:1:190850796:1	74572124	74575504	D	chromosome 4 open reading frame 3 [Source:HGNC Symbol;Acc:HGNC:19225]
ENSCJAG00000003228	KNOWN_BY_PROJECTION	protein_coding	FABP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	74548433	74551824	D	fatty acid binding protein 2, intestinal [Source:HGNC Symbol;Acc:HGNC:3556]
ENSCJAG00000003271	KNOWN	protein_coding	SYNPO2	chromosome:C_jacchus3.2.1:3:1:190850796:1	74485834	74970992	R	Synaptopodin-2 isoform a {ECO:0000313|EMBL:JAB11512.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005962}  [Source:UniProtKB/TrEMBL;Acc:F7IBZ7]
ENSCJAG00000015677	KNOWN_BY_PROJECTION	protein_coding	AURKB	chromosome:C_jacchus3.2.1:13:1:117903854:1	50566576	50572533	D	aurora kinase B [Source:HGNC Symbol;Acc:HGNC:11390]
ENSCJAG00000011702	KNOWN_BY_PROJECTION	protein_coding	CDH10	chromosome:C_jacchus3.2.1:2:1:204313951:1	178912548	179027604	D	cadherin 10, type 2 (T2-cadherin) [Source:HGNC Symbol;Acc:HGNC:1749]
ENSCJAG00000014699	KNOWN_BY_PROJECTION	protein_coding	COG4	chromosome:C_jacchus3.2.1:20:1:44557958:1	27867699	27907759	D	component of oligomeric golgi complex 4 [Source:HGNC Symbol;Acc:HGNC:18620]
ENSCJAG00000002582	NOVEL	pseudogene	ENSCJAG00000002582	chromosome:C_jacchus3.2.1:4:1:171630274:1	32378725	32381061	R	<no descrition>
ENSCJAG00000003547	KNOWN_BY_PROJECTION	protein_coding	RASEF	chromosome:C_jacchus3.2.1:1:1:210400635:1	85308540	85388303	D	RAS and EF-hand domain containing [Source:HGNC Symbol;Acc:HGNC:26464]
ENSCJAG00000003144	KNOWN_BY_PROJECTION	protein_coding	PRSS36	chromosome:C_jacchus3.2.1:12:1:121768101:1	29079173	29090102	R	protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
ENSCJAG00000007662	KNOWN_BY_PROJECTION	protein_coding	CDH9	chromosome:C_jacchus3.2.1:2:1:204313951:1	176344946	176508775	D	cadherin 9, type 2 (T1-cadherin) [Source:HGNC Symbol;Acc:HGNC:1768]
ENSCJAG00000002601	KNOWN	protein_coding	LSM2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32366101	32371708	R	U6 snRNA-associated Sm-like protein LSm2 {ECO:0000313|EMBL:JAB02692.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004711}  [Source:UniProtKB/TrEMBL;Acc:F7C2X5]
ENSCJAG00000004124	KNOWN_BY_PROJECTION	protein_coding	AMOTL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	42888884	42993698	R	angiomotin like 1 [Source:HGNC Symbol;Acc:HGNC:17811]
ENSCJAG00000003135	KNOWN	protein_coding	PRSS8	chromosome:C_jacchus3.2.1:12:1:121768101:1	29070048	29074393	R	Prostasin preproprotein {ECO:0000313|EMBL:JAB06719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005717}  [Source:UniProtKB/TrEMBL;Acc:F7IEK2]
ENSCJAG00000034850	NOVEL	protein_coding	ENSCJAG00000034850	chromosome:C_jacchus3.2.1:2:1:204313951:1	173475975	173476462	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050952}  [Source:UniProtKB/TrEMBL;Acc:F6TBD8]
ENSCJAG00000015612	KNOWN	protein_coding	ARHGAP28	chromosome:C_jacchus3.2.1:13:1:117903854:1	50543930	50654344	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028852}  [Source:UniProtKB/TrEMBL;Acc:F6WPN6]
ENSCJAG00000004188	KNOWN	protein_coding	CWC15	chromosome:C_jacchus3.2.1:11:1:130397257:1	42795072	42806237	D	Spliceosome-associated protein CWC15 homolog {ECO:0000313|EMBL:JAB04119.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007616}  [Source:UniProtKB/TrEMBL;Acc:F6PQC3]
ENSCJAG00000003122	KNOWN	protein_coding	KAT8	chromosome:C_jacchus3.2.1:12:1:121768101:1	29055498	29070004	D	Histone acetyltransferase KAT8 isoform 1 {ECO:0000313|EMBL:JAB19567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005694}  [Source:UniProtKB/TrEMBL;Acc:F7HL51]
ENSCJAG00000018954	KNOWN	protein_coding	CDH6	chromosome:C_jacchus3.2.1:2:1:204313951:1	172019350	172166658	R	Cadherin-6 preproprotein {ECO:0000313|EMBL:JAB18115.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035229}  [Source:UniProtKB/TrEMBL;Acc:F7IMY6]
ENSCJAG00000004207	KNOWN_BY_PROJECTION	protein_coding	KDM4E	chromosome:C_jacchus3.2.1:11:1:130397257:1	42683380	42720905	R	lysine (K)-specific demethylase 4E [Source:HGNC Symbol;Acc:HGNC:37098]
ENSCJAG00000004211	KNOWN_BY_PROJECTION	protein_coding	SRSF8	chromosome:C_jacchus3.2.1:11:1:130397257:1	42662700	42665352	R	serine/arginine-rich splicing factor 8 [Source:HGNC Symbol;Acc:HGNC:16988]
ENSCJAG00000015553	KNOWN_BY_PROJECTION	protein_coding	LAMA1	chromosome:C_jacchus3.2.1:13:1:117903854:1	50362491	50506031	D	laminin, alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]
ENSCJAG00000004220	KNOWN	protein_coding	SESN3	chromosome:C_jacchus3.2.1:11:1:130397257:1	42483592	42548709	D	Sestrin-3 isoform 1 {ECO:0000313|EMBL:JAB11535.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007689}  [Source:UniProtKB/TrEMBL;Acc:F6T2D9]
ENSCJAG00000018881	KNOWN	protein_coding	DROSHA	chromosome:C_jacchus3.2.1:2:1:204313951:1	171799956	171945483	D	Ribonuclease 3 isoform 1 {ECO:0000313|EMBL:JAB27489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035201}  [Source:UniProtKB/TrEMBL;Acc:F7IQB7]
ENSCJAG00000011936	KNOWN_BY_PROJECTION	protein_coding	ERBB3	chromosome:C_jacchus3.2.1:9:1:124281992:1	44819889	44843329	D	erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]
ENSCJAG00000015552	NOVEL	pseudogene	ENSCJAG00000015552	chromosome:C_jacchus3.2.1:13:1:117903854:1	50186823	50187730	R	<no descrition>
ENSCJAG00000003554	KNOWN	protein_coding	FRMD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	84782262	85119948	D	FERM domain-containing protein 3 isoform 1 {ECO:0000313|EMBL:JAB18455.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006514}  [Source:UniProtKB/TrEMBL;Acc:F7FH63]
ENSCJAG00000018013	KNOWN_BY_PROJECTION	protein_coding	PLCG1	chromosome:C_jacchus3.2.1:5:1:159171411:1	35150287	35193071	D	phospholipase C, gamma 1 [Source:HGNC Symbol;Acc:HGNC:9065]
ENSCJAG00000018868	NOVEL	protein_coding	ENSCJAG00000018868	chromosome:C_jacchus3.2.1:2:1:204313951:1	171762293	171762752	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035043}  [Source:UniProtKB/TrEMBL;Acc:F7IDK4]
ENSCJAG00000012071	NOVEL	pseudogene	ENSCJAG00000012071	chromosome:C_jacchus3.2.1:9:1:124281992:1	44799173	44799550	D	<no descrition>
ENSCJAG00000007527	KNOWN	protein_coding	RAB5B	chromosome:C_jacchus3.2.1:9:1:124281992:1	44777812	44785451	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014027}  [Source:UniProtKB/TrEMBL;Acc:F7I2J2]
ENSCJAG00000015472	KNOWN	protein_coding	PTPRM	chromosome:C_jacchus3.2.1:13:1:117903854:1	48955690	49636061	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028619}  [Source:UniProtKB/TrEMBL;Acc:F6XD69]
ENSCJAG00000004213	KNOWN	protein_coding	ENDOD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	42434644	42641166	R	Endonuclease domain-containing 1 protein {ECO:0000313|EMBL:JAB25768.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007644}  [Source:UniProtKB/TrEMBL;Acc:F6PGI8]
ENSCJAG00000003595	NOVEL	protein_coding	ENSCJAG00000003595	chromosome:C_jacchus3.2.1:1:1:210400635:1	84765562	84766471	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006521}  [Source:UniProtKB/TrEMBL;Acc:F7F4D9]
ENSCJAG00000003596	KNOWN	protein_coding	IDNK	chromosome:C_jacchus3.2.1:1:1:210400635:1	84678215	84706855	R	Putative gluconokinase isoform 1 {ECO:0000313|EMBL:JAB12712.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006537}  [Source:UniProtKB/TrEMBL;Acc:F7F3U9]
ENSCJAG00000004255	KNOWN	protein_coding	FAM76B	chromosome:C_jacchus3.2.1:11:1:130397257:1	41882053	41902914	D	Protein FAM76B {ECO:0000313|EMBL:JAB03306.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007729}  [Source:UniProtKB/TrEMBL;Acc:F6Y823]
ENSCJAG00000033020	NOVEL	protein_coding	ENSCJAG00000033020	chromosome:C_jacchus3.2.1:13:1:117903854:1	48837820	48844831	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041950}  [Source:UniProtKB/TrEMBL;Acc:F7GNY6]
ENSCJAG00000015468	KNOWN_BY_PROJECTION	protein_coding	RAB12	chromosome:C_jacchus3.2.1:13:1:117903854:1	48701178	48715822	R	RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
ENSCJAG00000018392	KNOWN	protein_coding	PARP6	chromosome:C_jacchus3.2.1:10:1:132174527:1	14666180	14698610	R	Poly [ADP-ribose] polymerase 6 {ECO:0000313|EMBL:JAB05522.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034242}  [Source:UniProtKB/TrEMBL;Acc:F7BUM4]
ENSCJAG00000003176	KNOWN	protein_coding	PDE5A	chromosome:C_jacchus3.2.1:3:1:190850796:1	74387353	74518067	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005864}; cGMP-specific 3',5'-cyclic phosphodiesterase isoform 2 {ECO:0000313|EMBL:JAB50935.1}  [Source:UniProtKB/TrEMBL;Acc:F7HR58]
ENSCJAG00000004279	KNOWN_BY_PROJECTION	protein_coding	MTCL1	chromosome:C_jacchus3.2.1:13:1:117903854:1	48489930	48624351	R	microtubule crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:29121]
ENSCJAG00000014773	KNOWN	protein_coding	SF3B3	chromosome:C_jacchus3.2.1:20:1:44557958:1	27818385	27867437	R	Splicing factor 3B subunit 3 {ECO:0000313|EMBL:JAB05450.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027292}  [Source:UniProtKB/TrEMBL;Acc:F7F1S5]
ENSCJAG00000004281	KNOWN_BY_PROJECTION	protein_coding	CEP57	chromosome:C_jacchus3.2.1:11:1:130397257:1	41833387	41881204	R	centrosomal protein 57kDa [Source:HGNC Symbol;Acc:HGNC:30794]
ENSCJAG00000034701	NOVEL	protein_coding	ENSCJAG00000034701	chromosome:C_jacchus3.2.1:20:1:44557958:1	27777494	27781356	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043313}  [Source:UniProtKB/TrEMBL;Acc:F7HW82]
ENSCJAG00000004305	NOVEL	pseudogene	ENSCJAG00000004305	chromosome:C_jacchus3.2.1:13:1:117903854:1	48325602	48326547	D	<no descrition>
ENSCJAG00000014830	KNOWN_BY_PROJECTION	protein_coding	IL34	chromosome:C_jacchus3.2.1:20:1:44557958:1	27725479	27741349	R	interleukin 34 [Source:HGNC Symbol;Acc:HGNC:28529]
ENSCJAG00000003609	KNOWN	protein_coding	UBQLN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	84618193	84665733	D	Ubiquilin-1 isoform 2 {ECO:0000313|EMBL:JAB03855.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006608}  [Source:UniProtKB/TrEMBL;Acc:F7HBD5]
ENSCJAG00000014831	KNOWN_BY_PROJECTION	protein_coding	MTSS1L	chromosome:C_jacchus3.2.1:20:1:44557958:1	27697497	27721669	D	metastasis suppressor 1-like [Source:HGNC Symbol;Acc:HGNC:25094]
ENSCJAG00000004307	KNOWN	protein_coding	NDUFV2	chromosome:C_jacchus3.2.1:13:1:117903854:1	48125622	48157362	R	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial {ECO:0000313|EMBL:JAB28337.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007882}  [Source:UniProtKB/TrEMBL;Acc:F7C7K1]
ENSCJAG00000003664	NOVEL	protein_coding	ENSCJAG00000003664	chromosome:C_jacchus3.2.1:1:1:210400635:1	84587422	84588168	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006630}  [Source:UniProtKB/TrEMBL;Acc:F7HB34]
ENSCJAG00000014847	KNOWN_BY_PROJECTION	protein_coding	VAC14	chromosome:C_jacchus3.2.1:20:1:44557958:1	27562855	27695897	D	Vac14 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25507]
ENSCJAG00000007553	KNOWN	protein_coding	PMEL	chromosome:C_jacchus3.2.1:9:1:124281992:1	44738001	44746460	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014078}  [Source:UniProtKB/TrEMBL;Acc:F7HR25]
ENSCJAG00000018871	KNOWN_BY_PROJECTION	protein_coding	C5orf22	chromosome:C_jacchus3.2.1:2:1:204313951:1	171608991	171796854	R	chromosome 5 open reading frame 22 [Source:HGNC Symbol;Acc:HGNC:25639]
ENSCJAG00000004361	KNOWN_BY_PROJECTION	protein_coding	ANKRD12	chromosome:C_jacchus3.2.1:13:1:117903854:1	47985411	48123220	R	ankyrin repeat domain 12 [Source:HGNC Symbol;Acc:HGNC:29135]
ENSCJAG00000018866	NOVEL	pseudogene	ENSCJAG00000018866	chromosome:C_jacchus3.2.1:2:1:204313951:1	171608420	171608876	D	<no descrition>
ENSCJAG00000004327	KNOWN	protein_coding	MTMR2	chromosome:C_jacchus3.2.1:11:1:130397257:1	41732492	41830431	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007876}  [Source:UniProtKB/TrEMBL;Acc:F7C7X0]
ENSCJAG00000004414	KNOWN	protein_coding	TWSG1	chromosome:C_jacchus3.2.1:13:1:117903854:1	47852539	47917084	R	Twisted gastrulation protein homolog 1 {ECO:0000313|EMBL:JAB05802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008010}  [Source:UniProtKB/TrEMBL;Acc:F7AA49]
ENSCJAG00000018841	KNOWN_BY_PROJECTION	protein_coding	PDZD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	171181754	171491110	R	PDZ domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18486]
ENSCJAG00000004429	NOVEL	pseudogene	ENSCJAG00000004429	chromosome:C_jacchus3.2.1:13:1:117903854:1	47807102	47807634	R	<no descrition>
ENSCJAG00000004359	KNOWN_BY_PROJECTION	protein_coding	MAML2	chromosome:C_jacchus3.2.1:11:1:130397257:1	41559460	41678037	D	mastermind-like 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:16259]
ENSCJAG00000003108	KNOWN_BY_PROJECTION	protein_coding	BCKDK	chromosome:C_jacchus3.2.1:12:1:121768101:1	29047127	29051502	D	branched chain ketoacid dehydrogenase kinase [Source:HGNC Symbol;Acc:HGNC:16902]
ENSCJAG00000004365	KNOWN_BY_PROJECTION	protein_coding	CCDC82	chromosome:C_jacchus3.2.1:11:1:130397257:1	41264301	41294660	D	coiled-coil domain containing 82 [Source:HGNC Symbol;Acc:HGNC:26282]
ENSCJAG00000004379	NOVEL	protein_coding	ENSCJAG00000004379	chromosome:C_jacchus3.2.1:11:1:130397257:1	41258631	41259899	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007915}  [Source:UniProtKB/TrEMBL;Acc:F6ZRW2]
ENSCJAG00000004430	KNOWN	protein_coding	RALBP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	47703422	47769406	R	RalA-binding protein 1 {ECO:0000313|EMBL:JAB09929.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008058}  [Source:UniProtKB/TrEMBL;Acc:F6Z9D4]
ENSCJAG00000031544	NOVEL	pseudogene	ENSCJAG00000031544	chromosome:C_jacchus3.2.1:11:1:130397257:1	41256608	41257166	R	<no descrition>
ENSCJAG00000018101	KNOWN	protein_coding	TOP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	35038868	35138878	D	DNA topoisomerase 1 {ECO:0000313|EMBL:JAB05288.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033567}  [Source:UniProtKB/TrEMBL;Acc:F6SUM9]
ENSCJAG00000008233	NOVEL	protein_coding	ENSCJAG00000008233	chromosome:C_jacchus3.2.1:11:1:130397257:1	40649537	40650419	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015209}  [Source:UniProtKB/TrEMBL;Acc:F7GUU7]
ENSCJAG00000034120	NOVEL	pseudogene	ENSCJAG00000034120	chromosome:C_jacchus3.2.1:11:1:130397257:1	39751904	39752909	D	<no descrition>
ENSCJAG00000036738	NOVEL	protein_coding	ENSCJAG00000036738	chromosome:C_jacchus3.2.1:11:1:130397257:1	39718203	39719715	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052398}  [Source:UniProtKB/TrEMBL;Acc:F7ILB0]
ENSCJAG00000018817	KNOWN	protein_coding	GOLPH3	chromosome:C_jacchus3.2.1:2:1:204313951:1	171124958	171168332	D	Golgi phosphoprotein 3 {ECO:0000313|EMBL:JAB07510.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034978}  [Source:UniProtKB/TrEMBL;Acc:F7I3I1]
ENSCJAG00000000542	NOVEL	protein_coding	ENSCJAG00000000542	chromosome:C_jacchus3.2.1:11:1:130397257:1	39417300	39418624	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000921}  [Source:UniProtKB/TrEMBL;Acc:F6SBV6]
ENSCJAG00000018157	NOVEL	pseudogene	ENSCJAG00000018157	chromosome:C_jacchus3.2.1:5:1:159171411:1	34685328	34687226	R	<no descrition>
ENSCJAG00000018160	KNOWN_BY_PROJECTION	protein_coding	FGF19	chromosome:C_jacchus3.2.1:5:1:159171411:1	34272970	34273570	D	fibroblast growth factor 19 [Source:HGNC Symbol;Acc:HGNC:3675]
ENSCJAG00000003667	KNOWN	protein_coding	GKAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	84453588	84563861	D	G kinase-anchoring protein 1 isoform a {ECO:0000313|EMBL:JAB03322.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006698}  [Source:UniProtKB/TrEMBL;Acc:F7GIS0]
ENSCJAG00000018473	KNOWN_BY_PROJECTION	protein_coding	PKM	chromosome:C_jacchus3.2.1:10:1:132174527:1	14623055	14656326	R	pyruvate kinase, muscle [Source:HGNC Symbol;Acc:HGNC:9021]
ENSCJAG00000003156	KNOWN	protein_coding	MAD2L1	chromosome:C_jacchus3.2.1:3:1:190850796:1	73949554	73956719	D	Mitotic spindle assembly checkpoint protein MAD2A {ECO:0000313|EMBL:JAB04915.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005784}  [Source:UniProtKB/TrEMBL;Acc:F7I7J1]
ENSCJAG00000011495	KNOWN_BY_PROJECTION	protein_coding	DHX35	chromosome:C_jacchus3.2.1:5:1:159171411:1	32985201	33065868	D	DEAH (Asp-Glu-Ala-His) box polypeptide 35 [Source:HGNC Symbol;Acc:HGNC:15861]
ENSCJAG00000004459	KNOWN_BY_PROJECTION	protein_coding	PPP4R1	chromosome:C_jacchus3.2.1:13:1:117903854:1	47604160	47688381	D	protein phosphatase 4, regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:9320]
ENSCJAG00000003097	KNOWN_BY_PROJECTION	protein_coding	VKORC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	29031597	29042430	R	vitamin K epoxide reductase complex, subunit 1 [Source:HGNC Symbol;Acc:HGNC:23663]
ENSCJAG00000011490	KNOWN_BY_PROJECTION	protein_coding	FAM83D	chromosome:C_jacchus3.2.1:5:1:159171411:1	32952448	32976547	D	family with sequence similarity 83, member D [Source:HGNC Symbol;Acc:HGNC:16122]
ENSCJAG00000003691	KNOWN_BY_PROJECTION	protein_coding	KIF27	chromosome:C_jacchus3.2.1:1:1:210400635:1	84358887	84446232	D	kinesin family member 27 [Source:HGNC Symbol;Acc:HGNC:18632]
ENSCJAG00000036127	KNOWN_BY_PROJECTION	protein_coding	PRSS53	chromosome:C_jacchus3.2.1:12:1:121768101:1	29031584	29036867	R	protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
ENSCJAG00000011486	KNOWN_BY_PROJECTION	protein_coding	PPP1R16B	chromosome:C_jacchus3.2.1:5:1:159171411:1	32845645	32943527	D	protein phosphatase 1, regulatory subunit 16B [Source:HGNC Symbol;Acc:HGNC:15850]
ENSCJAG00000003739	KNOWN	protein_coding	C9ORF64	chromosome:C_jacchus3.2.1:1:1:210400635:1	84313614	84330444	D	UPF0553 protein C9orf64 {ECO:0000313|EMBL:JAB07141.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006786}  [Source:UniProtKB/TrEMBL;Acc:F7EBM2]
ENSCJAG00000003085	KNOWN_BY_PROJECTION	protein_coding	ZNF646	chromosome:C_jacchus3.2.1:12:1:121768101:1	29024043	29029832	D	zinc finger protein 646 [Source:HGNC Symbol;Acc:HGNC:29004]
ENSCJAG00000018524	KNOWN_BY_PROJECTION	protein_coding	GRAMD2	chromosome:C_jacchus3.2.1:10:1:132174527:1	14583902	14593169	R	GRAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:27287]
ENSCJAG00000011470	KNOWN	protein_coding	ACTR5	chromosome:C_jacchus3.2.1:5:1:159171411:1	32760016	32782424	D	Actin-related protein 5 {ECO:0000313|EMBL:JAB04904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021104}  [Source:UniProtKB/TrEMBL;Acc:F6T7S4]
ENSCJAG00000018529	KNOWN	protein_coding	SENP8	chromosome:C_jacchus3.2.1:10:1:132174527:1	14536612	14559411	D	Sentrin-specific protease 8 {ECO:0000313|EMBL:JAB10263.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034385}  [Source:UniProtKB/TrEMBL;Acc:F6WYT0]
ENSCJAG00000011466	KNOWN	protein_coding	SLC32A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	32742425	32747339	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021083}; Vesicular inhibitory amino acid transporter {ECO:0000313|EMBL:JAB22958.1}  [Source:UniProtKB/TrEMBL;Acc:F6TUP2]
ENSCJAG00000004529	KNOWN	protein_coding	RAB31	chromosome:C_jacchus3.2.1:13:1:117903854:1	47334351	47509902	R	Ras-related protein Rab-31 {ECO:0000313|EMBL:JAB09767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008226}  [Source:UniProtKB/TrEMBL;Acc:F7IFM0]
ENSCJAG00000004548	KNOWN_BY_PROJECTION	protein_coding	TXNDC2	chromosome:C_jacchus3.2.1:13:1:117903854:1	47308751	47310237	R	thioredoxin domain containing 2 (spermatozoa) [Source:HGNC Symbol;Acc:HGNC:16470]
ENSCJAG00000018783	KNOWN	protein_coding	MTMR12	chromosome:C_jacchus3.2.1:2:1:204313951:1	170979297	171066276	D	Myotubularin-related protein 12 {ECO:0000313|EMBL:JAB07233.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034936}  [Source:UniProtKB/TrEMBL;Acc:F7IAK7]
ENSCJAG00000003133	KNOWN_BY_PROJECTION	protein_coding	PRDM5	chromosome:C_jacchus3.2.1:3:1:190850796:1	73109578	73346694	D	PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
ENSCJAG00000004552	KNOWN_BY_PROJECTION	protein_coding	VAPA	chromosome:C_jacchus3.2.1:13:1:117903854:1	47241659	47266582	R	VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa [Source:HGNC Symbol;Acc:HGNC:12648]
ENSCJAG00000000543	KNOWN_BY_PROJECTION	protein_coding	CNTN5	chromosome:C_jacchus3.2.1:11:1:130397257:1	36989360	37603427	R	contactin 5 [Source:HGNC Symbol;Acc:HGNC:2175]
ENSCJAG00000004576	KNOWN	protein_coding	APCDD1	chromosome:C_jacchus3.2.1:13:1:117903854:1	46617775	46652385	R	Protein APCDD1 {ECO:0000313|EMBL:JAB06972.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008309}  [Source:UniProtKB/TrEMBL;Acc:F7HZ27]
ENSCJAG00000003078	KNOWN_BY_PROJECTION	protein_coding	ZNF668	chromosome:C_jacchus3.2.1:12:1:121768101:1	29008801	29021495	R	zinc finger protein 668 [Source:HGNC Symbol;Acc:HGNC:25821]
ENSCJAG00000003128	KNOWN_BY_PROJECTION	protein_coding	NDNF	chromosome:C_jacchus3.2.1:3:1:190850796:1	72944327	72985572	D	neuron-derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:26256]
ENSCJAG00000004590	KNOWN	protein_coding	NAPG	chromosome:C_jacchus3.2.1:13:1:117903854:1	46558672	46581845	R	Gamma-soluble NSF attachment protein {ECO:0000313|EMBL:JAB08165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008396}  [Source:UniProtKB/TrEMBL;Acc:F7IPU4]
ENSCJAG00000014875	KNOWN_BY_PROJECTION	protein_coding	HYDIN	chromosome:C_jacchus3.2.1:20:1:44557958:1	27090179	27557709	D	HYDIN, axonemal central pair apparatus protein [Source:HGNC Symbol;Acc:HGNC:19368]
ENSCJAG00000003110	KNOWN_BY_PROJECTION	protein_coding	TNIP3	chromosome:C_jacchus3.2.1:3:1:190850796:1	72760619	72871796	D	TNFAIP3 interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:19315]
ENSCJAG00000000566	KNOWN_BY_PROJECTION	protein_coding	ARHGAP42	chromosome:C_jacchus3.2.1:11:1:130397257:1	36284117	36600155	R	Rho GTPase activating protein 42 [Source:HGNC Symbol;Acc:HGNC:26545]
ENSCJAG00000018740	KNOWN_BY_PROJECTION	protein_coding	ZFR	chromosome:C_jacchus3.2.1:2:1:204313951:1	170854197	170942801	D	zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
ENSCJAG00000003105	KNOWN_BY_PROJECTION	protein_coding	QRFPR	chromosome:C_jacchus3.2.1:3:1:190850796:1	72620938	72673720	D	pyroglutamylated RFamide peptide receptor [Source:HGNC Symbol;Acc:HGNC:15565]
ENSCJAG00000000583	KNOWN_BY_PROJECTION	protein_coding	PGR	chromosome:C_jacchus3.2.1:11:1:130397257:1	36157718	36233811	D	progesterone receptor [Source:HGNC Symbol;Acc:HGNC:8910]
ENSCJAG00000004648	KNOWN_BY_PROJECTION	protein_coding	PIEZO2	chromosome:C_jacchus3.2.1:13:1:117903854:1	45959758	46473118	D	piezo-type mechanosensitive ion channel component 2 [Source:HGNC Symbol;Acc:HGNC:26270]
ENSCJAG00000000593	NOVEL	pseudogene	ENSCJAG00000000593	chromosome:C_jacchus3.2.1:11:1:130397257:1	36115926	36116800	D	<no descrition>
ENSCJAG00000011443	KNOWN_BY_PROJECTION	protein_coding	ARHGAP40	chromosome:C_jacchus3.2.1:5:1:159171411:1	32618318	32667373	D	Rho GTPase activating protein 40 [Source:HGNC Symbol;Acc:HGNC:16226]
ENSCJAG00000003059	KNOWN_BY_PROJECTION	protein_coding	STX4	chromosome:C_jacchus3.2.1:12:1:121768101:1	28978139	28985144	D	syntaxin 4 [Source:HGNC Symbol;Acc:HGNC:11439]
ENSCJAG00000011441	KNOWN_BY_PROJECTION	protein_coding	ADIG	chromosome:C_jacchus3.2.1:5:1:159171411:1	32605600	32610542	D	adipogenin [Source:HGNC Symbol;Acc:HGNC:28606]
ENSCJAG00000000595	KNOWN_BY_PROJECTION	protein_coding	TRPC6	chromosome:C_jacchus3.2.1:11:1:130397257:1	35758107	35882537	D	transient receptor potential cation channel, subfamily C, member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
ENSCJAG00000022068	KNOWN	protein_coding	CMTR2	chromosome:C_jacchus3.2.1:20:1:44557958:1	27027744	27185596	D	FtsJ methyltransferase domain-containing protein 1 {ECO:0000313|EMBL:JAB02196.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040732}  [Source:UniProtKB/TrEMBL;Acc:F7HV50]
ENSCJAG00000000619	KNOWN_BY_PROJECTION	protein_coding	ANGPTL5	chromosome:C_jacchus3.2.1:11:1:130397257:1	35392186	35410061	D	angiopoietin-like 5 [Source:HGNC Symbol;Acc:HGNC:19705]
ENSCJAG00000022832	NOVEL	protein_coding	ENSCJAG00000022832	chromosome:C_jacchus3.2.1:5:1:159171411:1	32502914	32503634	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041413}  [Source:UniProtKB/TrEMBL;Acc:F7CWX7]
ENSCJAG00000014962	KNOWN_BY_PROJECTION	protein_coding	CALB2	chromosome:C_jacchus3.2.1:20:1:44557958:1	26928420	26965754	R	calbindin 2 [Source:HGNC Symbol;Acc:HGNC:1435]
ENSCJAG00000000621	KNOWN_BY_PROJECTION	protein_coding	KIAA1377	chromosome:C_jacchus3.2.1:11:1:130397257:1	35304276	35377387	R	KIAA1377 [Source:HGNC Symbol;Acc:HGNC:29264]
ENSCJAG00000003042	KNOWN	protein_coding	STX1B	chromosome:C_jacchus3.2.1:12:1:121768101:1	28934783	28954726	R	Syntaxin-1B {ECO:0000313|EMBL:JAB19446.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005540}  [Source:UniProtKB/TrEMBL;Acc:F7IJH5]
ENSCJAG00000003030	KNOWN	protein_coding	HSD3B7	chromosome:C_jacchus3.2.1:12:1:121768101:1	28927059	28931022	D	3 beta-hydroxysteroid dehydrogenase type 7 isoform a {ECO:0000313|EMBL:JAB05111.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005512}  [Source:UniProtKB/TrEMBL;Acc:F7ILT9]
ENSCJAG00000014972	KNOWN	protein_coding	ZNF19	chromosome:C_jacchus3.2.1:20:1:44557958:1	26816926	26865757	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027575}  [Source:UniProtKB/TrEMBL;Acc:F7CU74]
ENSCJAG00000002604	KNOWN_BY_PROJECTION	protein_coding	VARS	chromosome:C_jacchus3.2.1:4:1:171630274:1	32348097	32364771	R	valyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:12651]
ENSCJAG00000014983	NOVEL	protein_coding	ENSCJAG00000014983	chromosome:C_jacchus3.2.1:20:1:44557958:1	26805858	26806604	R	<no descrition>
ENSCJAG00000004728	KNOWN	protein_coding	GNAL	chromosome:C_jacchus3.2.1:13:1:117903854:1	45076571	45276866	R	Guanine nucleotide-binding protein G(Olf) subunit alpha isoform 2 {ECO:0000313|EMBL:JAB51521.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046539}  [Source:UniProtKB/TrEMBL;Acc:F7I640]
ENSCJAG00000014984	KNOWN_BY_PROJECTION	protein_coding	TAT	chromosome:C_jacchus3.2.1:20:1:44557958:1	26743910	26753771	D	tyrosine aminotransferase [Source:HGNC Symbol;Acc:HGNC:11573]
ENSCJAG00000022069	KNOWN_BY_PROJECTION	protein_coding	CHST4	chromosome:C_jacchus3.2.1:20:1:44557958:1	26774605	26786795	R	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 [Source:HGNC Symbol;Acc:HGNC:1972]
ENSCJAG00000018738	NOVEL	pseudogene	ENSCJAG00000018738	chromosome:C_jacchus3.2.1:2:1:204313951:1	170806552	170807059	D	<no descrition>
ENSCJAG00000004773	KNOWN	protein_coding	MPPE1	chromosome:C_jacchus3.2.1:13:1:117903854:1	45052139	45075487	D	Metallophosphoesterase 1 isoform 1 {ECO:0000313|EMBL:JAB04377.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008712}  [Source:UniProtKB/TrEMBL;Acc:F7HSX2]
ENSCJAG00000018718	KNOWN	protein_coding	SUB1	chromosome:C_jacchus3.2.1:2:1:204313951:1	170683214	170698589	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049838}  [Source:UniProtKB/TrEMBL;Acc:F6ZCS5]
ENSCJAG00000018735	NOVEL	pseudogene	ENSCJAG00000018735	chromosome:C_jacchus3.2.1:2:1:204313951:1	170776804	170777272	R	<no descrition>
ENSCJAG00000003750	KNOWN	protein_coding	HNRNPK	chromosome:C_jacchus3.2.1:1:1:210400635:1	84288978	84302004	D	Heterogeneous nuclear ribonucleoprotein K isoform a {ECO:0000313|EMBL:JAB18444.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046691}  [Source:UniProtKB/TrEMBL;Acc:F7IK44]
ENSCJAG00000011302	KNOWN	protein_coding	RALGAPB	chromosome:C_jacchus3.2.1:5:1:159171411:1	32493811	32602511	D	Ral GTPase-activating protein subunit beta {ECO:0000313|EMBL:JAB11367.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021025}  [Source:UniProtKB/TrEMBL;Acc:F6PWP5]
ENSCJAG00000018532	KNOWN_BY_PROJECTION	protein_coding	MYO9A	chromosome:C_jacchus3.2.1:10:1:132174527:1	14288766	14437714	R	myosin IXA [Source:HGNC Symbol;Acc:HGNC:7608]
ENSCJAG00000031843	NOVEL	pseudogene	ENSCJAG00000031843	chromosome:C_jacchus3.2.1:13:1:117903854:1	44999894	45001010	D	<no descrition>
ENSCJAG00000005309	KNOWN	protein_coding	IMPA2	chromosome:C_jacchus3.2.1:13:1:117903854:1	44911172	44974419	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009730}  [Source:UniProtKB/TrEMBL;Acc:F7H1W3]
ENSCJAG00000018552	KNOWN_BY_PROJECTION	protein_coding	NR2E3	chromosome:C_jacchus3.2.1:10:1:132174527:1	14273477	14280673	D	nuclear receptor subfamily 2, group E, member 3 [Source:HGNC Symbol;Acc:HGNC:7974]
ENSCJAG00000005295	KNOWN_BY_PROJECTION	protein_coding	LDLRAD4	chromosome:C_jacchus3.2.1:13:1:117903854:1	44391482	44848203	D	low density lipoprotein receptor class A domain containing 4 [Source:HGNC Symbol;Acc:HGNC:1224]
ENSCJAG00000007591	KNOWN	protein_coding	DGKA	chromosome:C_jacchus3.2.1:9:1:124281992:1	44712448	44739510	D	Diacylglycerol kinase {ECO:0000256|RuleBase:RU361128}  [Source:UniProtKB/TrEMBL;Acc:F7IE23]
ENSCJAG00000023376	NOVEL	pseudogene	ENSCJAG00000023376	chromosome:C_jacchus3.2.1:13:1:117903854:1	44312123	44312337	R	<no descrition>
ENSCJAG00000014996	KNOWN_BY_PROJECTION	protein_coding	MARVELD3	chromosome:C_jacchus3.2.1:20:1:44557958:1	26685791	26705143	R	MARVEL domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30525]
ENSCJAG00000018712	KNOWN_BY_PROJECTION	protein_coding	NPR3	chromosome:C_jacchus3.2.1:2:1:204313951:1	170546014	170606583	R	natriuretic peptide receptor 3 [Source:HGNC Symbol;Acc:HGNC:7945]
ENSCJAG00000011297	NOVEL	protein_coding	ENSCJAG00000011297	chromosome:C_jacchus3.2.1:5:1:159171411:1	32473077	32478648	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020782}  [Source:UniProtKB/TrEMBL;Acc:F7GJ68]
ENSCJAG00000034784	NOVEL	protein_coding	ENSCJAG00000034784	chromosome:C_jacchus3.2.1:5:1:159171411:1	32458451	32459083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049291}  [Source:UniProtKB/TrEMBL;Acc:F6U9V3]
ENSCJAG00000033195	NOVEL	protein_coding	ENSCJAG00000033195	chromosome:C_jacchus3.2.1:5:1:159171411:1	32446102	32448219	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020674}  [Source:UniProtKB/TrEMBL;Acc:F7DII8]
ENSCJAG00000018711	NOVEL	pseudogene	ENSCJAG00000018711	chromosome:C_jacchus3.2.1:2:1:204313951:1	170543506	170543807	R	<no descrition>
ENSCJAG00000018707	NOVEL	protein_coding	ENSCJAG00000018707	chromosome:C_jacchus3.2.1:2:1:204313951:1	170145507	170146216	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034753}  [Source:UniProtKB/TrEMBL;Acc:F7I603]
ENSCJAG00000015005	KNOWN	protein_coding	PHLPP2	chromosome:C_jacchus3.2.1:20:1:44557958:1	26606156	26682048	D	PH domain leucine-rich repeat-containing protein phosphatase 2 {ECO:0000313|EMBL:JAB17944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027677}  [Source:UniProtKB/TrEMBL;Acc:F7GGC0]
ENSCJAG00000018705	NOVEL	protein_coding	ENSCJAG00000018705	chromosome:C_jacchus3.2.1:2:1:204313951:1	169999504	170000649	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034748}  [Source:UniProtKB/TrEMBL;Acc:F7I8B9]
ENSCJAG00000000623	KNOWN	protein_coding	C11ORF70	chromosome:C_jacchus3.2.1:11:1:130397257:1	35193176	35232243	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001081}; Uncharacterized protein C11orf70 isoform 1 {ECO:0000313|EMBL:JAB22210.1}  [Source:UniProtKB/TrEMBL;Acc:F7A1P9]
ENSCJAG00000003860	KNOWN	protein_coding	RMI1	chromosome:C_jacchus3.2.1:1:1:210400635:1	84270837	84288908	R	RecQ-mediated genome instability protein 1 {ECO:0000313|EMBL:JAB11050.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042098}  [Source:UniProtKB/TrEMBL;Acc:F6R6A0]
ENSCJAG00000002647	KNOWN_BY_PROJECTION	protein_coding	VWA7	chromosome:C_jacchus3.2.1:4:1:171630274:1	32336461	32347908	R	von Willebrand factor A domain containing 7 [Source:HGNC Symbol;Acc:HGNC:13939]
ENSCJAG00000003865	NOVEL	pseudogene	ENSCJAG00000003865	chromosome:C_jacchus3.2.1:1:1:210400635:1	84058075	84058994	D	<no descrition>
ENSCJAG00000007760	KNOWN_BY_PROJECTION	protein_coding	WIBG	chromosome:C_jacchus3.2.1:9:1:124281992:1	44689149	44709845	R	within bgcn homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:30258]
ENSCJAG00000005208	KNOWN_BY_PROJECTION	protein_coding	CEP192	chromosome:C_jacchus3.2.1:13:1:117903854:1	44204566	44291207	D	centrosomal protein 192kDa [Source:HGNC Symbol;Acc:HGNC:25515]
ENSCJAG00000007786	NOVEL	protein_coding	ENSCJAG00000007786	chromosome:C_jacchus3.2.1:9:1:124281992:1	44661855	44662936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014423}  [Source:UniProtKB/TrEMBL;Acc:F7HZZ8]
ENSCJAG00000007789	KNOWN_BY_PROJECTION	protein_coding	MMP19	chromosome:C_jacchus3.2.1:9:1:124281992:1	44642509	44649476	R	matrix metallopeptidase 19 [Source:HGNC Symbol;Acc:HGNC:7165]
ENSCJAG00000000627	KNOWN	protein_coding	YAP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	35044827	35163718	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001100}; Yorkie homolog isoform 3 {ECO:0000313|EMBL:JAB10534.1}  [Source:UniProtKB/TrEMBL;Acc:F6W445]
ENSCJAG00000018572	KNOWN_BY_PROJECTION	protein_coding	THSD4	chromosome:C_jacchus3.2.1:10:1:132174527:1	14004586	14248245	D	thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
ENSCJAG00000009701	KNOWN_BY_PROJECTION	protein_coding	LBP	chromosome:C_jacchus3.2.1:5:1:159171411:1	32366191	32401277	D	lipopolysaccharide binding protein [Source:HGNC Symbol;Acc:HGNC:6517]
ENSCJAG00000018595	KNOWN_BY_PROJECTION	protein_coding	CT62	chromosome:C_jacchus3.2.1:10:1:132174527:1	13563167	13564110	R	cancer/testis antigen 62 [Source:HGNC Symbol;Acc:HGNC:27286]
ENSCJAG00000000654	KNOWN_BY_PROJECTION	protein_coding	BIRC3	chromosome:C_jacchus3.2.1:11:1:130397257:1	34922028	34925698	R	baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]
ENSCJAG00000031762	NOVEL	protein_coding	ENSCJAG00000031762	chromosome:C_jacchus3.2.1:11:1:130397257:1	33869972	33870791	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044533}  [Source:UniProtKB/TrEMBL;Acc:F7G990]
ENSCJAG00000033593	NOVEL	protein_coding	ENSCJAG00000033593	chromosome:C_jacchus3.2.1:11:1:130397257:1	33639366	33640128	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008752}  [Source:UniProtKB/TrEMBL;Acc:F7HMA9]
ENSCJAG00000007764	NOVEL	pseudogene	ENSCJAG00000007764	chromosome:C_jacchus3.2.1:11:1:130397257:1	33637978	33638402	R	<no descrition>
ENSCJAG00000021501	KNOWN_BY_PROJECTION	protein_coding	BPI	chromosome:C_jacchus3.2.1:5:1:159171411:1	32329287	32354956	D	bactericidal/permeability-increasing protein [Source:HGNC Symbol;Acc:HGNC:1095]
ENSCJAG00000018602	KNOWN	protein_coding	LRRC49	chromosome:C_jacchus3.2.1:10:1:132174527:1	13369462	13511200	D	Leucine-rich repeat-containing protein 49 isoform 2 {ECO:0000313|EMBL:JAB05953.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034615}  [Source:UniProtKB/TrEMBL;Acc:F7HTU4]
ENSCJAG00000003000	KNOWN_BY_PROJECTION	protein_coding	SETD1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	28899500	28926478	D	SET domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29010]
ENSCJAG00000003868	KNOWN_BY_PROJECTION	protein_coding	SLC28A3	chromosome:C_jacchus3.2.1:1:1:210400635:1	83947787	84008332	D	solute carrier family 28 (concentrative nucleoside transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:16484]
ENSCJAG00000021502	KNOWN_BY_PROJECTION	protein_coding	KIAA1755	chromosome:C_jacchus3.2.1:5:1:159171411:1	32237138	32287343	R	KIAA1755 [Source:HGNC Symbol;Acc:HGNC:29372]
ENSCJAG00000005164	KNOWN	protein_coding	SEH1L	chromosome:C_jacchus3.2.1:13:1:117903854:1	44120982	44155281	D	Nucleoporin SEH1 isoform 2 {ECO:0000313|EMBL:JAB05669.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009492}  [Source:UniProtKB/TrEMBL;Acc:F7EUR5]
ENSCJAG00000007810	NOVEL	protein_coding	ENSCJAG00000007810	chromosome:C_jacchus3.2.1:9:1:124281992:1	44640326	44641032	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052049}  [Source:UniProtKB/TrEMBL;Acc:F7IH09]
ENSCJAG00000007744	KNOWN	protein_coding	B3GAT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	32816548	32822676	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014379}  [Source:UniProtKB/TrEMBL;Acc:F7I9G1]
ENSCJAG00000034708	KNOWN	protein_coding	ORAI3	chromosome:C_jacchus3.2.1:12:1:121768101:1	28890253	28896567	D	Protein orai-3 {ECO:0000313|EMBL:JAB05671.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005401}  [Source:UniProtKB/TrEMBL;Acc:F7I315]
ENSCJAG00000005102	KNOWN	protein_coding	PTPN2	chromosome:C_jacchus3.2.1:13:1:117903854:1	43935437	44053917	R	Tyrosine-protein phosphatase non-receptor type {ECO:0000256|PIRNR:PIRNR000926}  [Source:UniProtKB/TrEMBL;Acc:F7GM40]
ENSCJAG00000007727	KNOWN_BY_PROJECTION	protein_coding	GLB1L3	chromosome:C_jacchus3.2.1:11:1:130397257:1	32695776	32811226	D	galactosidase, beta 1-like 3 [Source:HGNC Symbol;Acc:HGNC:25147]
ENSCJAG00000015028	KNOWN_BY_PROJECTION	protein_coding	AP1G1	chromosome:C_jacchus3.2.1:20:1:44557958:1	26517875	26596518	D	adaptor-related protein complex 1, gamma 1 subunit [Source:HGNC Symbol;Acc:HGNC:555]
ENSCJAG00000005097	NOVEL	protein_coding	ENSCJAG00000005097	chromosome:C_jacchus3.2.1:13:1:117903854:1	43910494	43911077	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7DN14]
ENSCJAG00000002985	KNOWN_BY_PROJECTION	protein_coding	FBXL19	chromosome:C_jacchus3.2.1:12:1:121768101:1	28866071	28889907	D	F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
ENSCJAG00000034175	NOVEL	protein_coding	ENSCJAG00000034175	chromosome:C_jacchus3.2.1:11:1:130397257:1	32523980	32525069	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043564}  [Source:UniProtKB/TrEMBL;Acc:F7IPB0]
ENSCJAG00000018663	KNOWN	protein_coding	TARS	chromosome:C_jacchus3.2.1:2:1:204313951:1	169825980	169852697	R	Threonine--tRNA ligase, cytoplasmic isoform 1 {ECO:0000313|EMBL:JAB03618.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034744}  [Source:UniProtKB/TrEMBL;Acc:F7I8C3]
ENSCJAG00000034417	NOVEL	protein_coding	ENSCJAG00000034417	chromosome:C_jacchus3.2.1:12:1:121768101:1	28842640	28849419	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049432}  [Source:UniProtKB/TrEMBL;Acc:F7BYU4]
ENSCJAG00000002982	KNOWN_BY_PROJECTION	protein_coding	CTF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	28831620	28838562	D	cardiotrophin 1 [Source:HGNC Symbol;Acc:HGNC:2499]
ENSCJAG00000015043	KNOWN_BY_PROJECTION	protein_coding	CFI	chromosome:C_jacchus3.2.1:20:1:44557958:1	26487821	26494309	D	complement factor I [Source:HGNC Symbol;Acc:HGNC:5394]
ENSCJAG00000015044	KNOWN	protein_coding	ZNF821	chromosome:C_jacchus3.2.1:20:1:44557958:1	26427301	26456494	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027726}; Zinc finger protein 821 isoform 1 {ECO:0000313|EMBL:JAB05068.1}  [Source:UniProtKB/TrEMBL;Acc:F7E7Y9]
ENSCJAG00000005028	KNOWN	protein_coding	CEP76	chromosome:C_jacchus3.2.1:13:1:117903854:1	43793556	43839756	R	Centrosomal protein of 76 kDa isoform a {ECO:0000313|EMBL:JAB30504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009256}  [Source:UniProtKB/TrEMBL;Acc:F7I6B5]
ENSCJAG00000007817	NOVEL	protein_coding	ENSCJAG00000007817	chromosome:C_jacchus3.2.1:9:1:124281992:1	44625615	44635093	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014502}  [Source:UniProtKB/TrEMBL;Acc:F7IND6]
ENSCJAG00000015051	KNOWN_BY_PROJECTION	protein_coding	IST1	chromosome:C_jacchus3.2.1:20:1:44557958:1	26385312	26419354	R	increased sodium tolerance 1 homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:28977]
ENSCJAG00000005007	KNOWN_BY_PROJECTION	protein_coding	PSMG2	chromosome:C_jacchus3.2.1:13:1:117903854:1	43789371	43865706	D	proteasome (prosome, macropain) assembly chaperone 2 [Source:HGNC Symbol;Acc:HGNC:24929]
ENSCJAG00000007841	KNOWN	protein_coding	ORMDL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	44622745	44626334	D	ORM1-like protein 2 {ECO:0000313|EMBL:JAB07118.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014530}  [Source:UniProtKB/TrEMBL;Acc:F7IL07]
ENSCJAG00000003897	KNOWN	protein_coding	NTRK2	chromosome:C_jacchus3.2.1:1:1:210400635:1	83285773	83639154	R	Tyrosine-protein kinase receptor {ECO:0000256|RuleBase:RU000312}  [Source:UniProtKB/TrEMBL;Acc:F7GBB8]
ENSCJAG00000031139	NOVEL	protein_coding	ENSCJAG00000031139	chromosome:C_jacchus3.2.1:13:1:117903854:1	43572144	43572939	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048167}  [Source:UniProtKB/TrEMBL;Acc:F7H3I8]
ENSCJAG00000007853	KNOWN	protein_coding	SARNP	chromosome:C_jacchus3.2.1:9:1:124281992:1	44551690	44622437	R	SAP domain-containing ribonucleoprotein {ECO:0000313|EMBL:JAB02156.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014619}  [Source:UniProtKB/TrEMBL;Acc:F7I4G5]
ENSCJAG00000021503	KNOWN_BY_PROJECTION	protein_coding	TGM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	32149018	32187804	R	transglutaminase 2 [Source:HGNC Symbol;Acc:HGNC:11778]
ENSCJAG00000002698	NOVEL	protein_coding	ENSCJAG00000002698	chromosome:C_jacchus3.2.1:4:1:171630274:1	32308541	32335216	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004892}  [Source:UniProtKB/TrEMBL;Acc:F6WQ66]
ENSCJAG00000002955	KNOWN_BY_PROJECTION	protein_coding	BCL7C	chromosome:C_jacchus3.2.1:12:1:121768101:1	28766855	28829353	R	B-cell CLL/lymphoma 7C [Source:HGNC Symbol;Acc:HGNC:1006]
ENSCJAG00000002948	KNOWN_BY_PROJECTION	protein_coding	ZNF629	chromosome:C_jacchus3.2.1:12:1:121768101:1	28715676	28724377	R	zinc finger protein 629 [Source:HGNC Symbol;Acc:HGNC:29008]
ENSCJAG00000015072	KNOWN_BY_PROJECTION	protein_coding	PKD1L3	chromosome:C_jacchus3.2.1:20:1:44557958:1	26287046	26383965	D	polycystic kidney disease 1-like 3 [Source:HGNC Symbol;Acc:HGNC:21716]
ENSCJAG00000004952	KNOWN	protein_coding	SPIRE1	chromosome:C_jacchus3.2.1:13:1:117903854:1	43568203	43788589	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009117}  [Source:UniProtKB/TrEMBL;Acc:F7HNS5]
ENSCJAG00000007914	KNOWN_BY_PROJECTION	protein_coding	GDF11	chromosome:C_jacchus3.2.1:9:1:124281992:1	44540790	44552106	D	growth differentiation factor 11 [Source:HGNC Symbol;Acc:HGNC:4216]
ENSCJAG00000018642	KNOWN	protein_coding	LARP6	chromosome:C_jacchus3.2.1:10:1:132174527:1	13309085	13331401	R	La-related protein 6 isoform 1 {ECO:0000313|EMBL:JAB03490.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034638}  [Source:UniProtKB/TrEMBL;Acc:F7HMZ1]
ENSCJAG00000021504	KNOWN	protein_coding	RPRD1B	chromosome:C_jacchus3.2.1:5:1:159171411:1	32053677	32113487	D	Regulation of nuclear pre-mRNA domain-containing protein 1B {ECO:0000313|EMBL:JAB06414.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040040}  [Source:UniProtKB/TrEMBL;Acc:F7IJC6]
ENSCJAG00000018652	NOVEL	pseudogene	ENSCJAG00000018652	chromosome:C_jacchus3.2.1:10:1:132174527:1	13273391	13273829	R	<no descrition>
ENSCJAG00000018654	NOVEL	pseudogene	ENSCJAG00000018654	chromosome:C_jacchus3.2.1:10:1:132174527:1	13267209	13267676	D	<no descrition>
ENSCJAG00000004017	NOVEL	protein_coding	ENSCJAG00000004017	chromosome:C_jacchus3.2.1:1:1:210400635:1	83136759	83137811	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007302}  [Source:UniProtKB/TrEMBL;Acc:F6S7P4]
ENSCJAG00000015085	KNOWN	protein_coding	DHODH	chromosome:C_jacchus3.2.1:20:1:44557958:1	26266560	26282973	R	Dihydroorotate dehydrogenase (Quinone), mitochondrial {ECO:0000313|EMBL:JAB09114.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027805}  [Source:UniProtKB/TrEMBL;Acc:F7GU02]
ENSCJAG00000004022	NOVEL	pseudogene	ENSCJAG00000004022	chromosome:C_jacchus3.2.1:1:1:210400635:1	82907277	82908256	D	<no descrition>
ENSCJAG00000022901	NOVEL	pseudogene	ENSCJAG00000022901	chromosome:C_jacchus3.2.1:1:1:210400635:1	82897752	82898541	R	<no descrition>
ENSCJAG00000014812	NOVEL	pseudogene	ENSCJAG00000014812	chromosome:C_jacchus3.2.1:1:1:210400635:1	82805217	82806234	D	<no descrition>
ENSCJAG00000021505	KNOWN_BY_PROJECTION	protein_coding	TTI1	chromosome:C_jacchus3.2.1:5:1:159171411:1	31999281	32030962	R	TELO2 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29029]
ENSCJAG00000004931	KNOWN	protein_coding	SLMO1	chromosome:C_jacchus3.2.1:13:1:117903854:1	43536622	43558294	D	Protein slowmo homolog 1 isoform 1 {ECO:0000313|EMBL:JAB13035.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009032}  [Source:UniProtKB/TrEMBL;Acc:F7I8U2]
ENSCJAG00000018638	KNOWN_BY_PROJECTION	protein_coding	ADAMTS12	chromosome:C_jacchus3.2.1:2:1:204313951:1	169410271	169780279	D	ADAM metallopeptidase with thrombospondin type 1 motif, 12 [Source:HGNC Symbol;Acc:HGNC:14605]
ENSCJAG00000021506	KNOWN_BY_PROJECTION	protein_coding	VSTM2L	chromosome:C_jacchus3.2.1:5:1:159171411:1	31911250	31958253	D	V-set and transmembrane domain containing 2 like [Source:HGNC Symbol;Acc:HGNC:16096]
ENSCJAG00000004929	NOVEL	protein_coding	ENSCJAG00000004929	chromosome:C_jacchus3.2.1:13:1:117903854:1	43508747	43509199	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008996}  [Source:UniProtKB/TrEMBL;Acc:F7I3B7]
ENSCJAG00000019530	KNOWN_BY_PROJECTION	protein_coding	ACAD8	chromosome:C_jacchus3.2.1:11:1:130397257:1	32493038	32504836	D	acyl-CoA dehydrogenase family, member 8 [Source:HGNC Symbol;Acc:HGNC:87]
ENSCJAG00000015091	KNOWN	protein_coding	HP	chromosome:C_jacchus3.2.1:20:1:44557958:1	26228726	26233683	R	Haptoglobin isoform 2 preproprotein {ECO:0000313|EMBL:JAB04820.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027818}  [Source:UniProtKB/TrEMBL;Acc:F7GTV0]
ENSCJAG00000018903	NOVEL	protein_coding	ENSCJAG00000018903	chromosome:C_jacchus3.2.1:2:1:204313951:1	169368351	169368494	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049754}  [Source:UniProtKB/TrEMBL;Acc:F7CRY2]
ENSCJAG00000021507	KNOWN_BY_PROJECTION	protein_coding	CTNNBL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	31694596	31881812	D	catenin, beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
ENSCJAG00000018622	KNOWN_BY_PROJECTION	protein_coding	SLC45A2	chromosome:C_jacchus3.2.1:2:1:204313951:1	169304443	169347776	D	solute carrier family 45, member 2 [Source:HGNC Symbol;Acc:HGNC:16472]
ENSCJAG00000004847	KNOWN	protein_coding	AFG3L2	chromosome:C_jacchus3.2.1:13:1:117903854:1	43451479	43503729	R	AFG3-like protein 2 {ECO:0000313|EMBL:JAB02098.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008990}  [Source:UniProtKB/TrEMBL;Acc:F7I3C6]
ENSCJAG00000020535	NOVEL	protein_coding	ENSCJAG00000020535	chromosome:C_jacchus3.2.1:1:1:210400635:1	82785671	82787259	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038151}  [Source:UniProtKB/TrEMBL;Acc:F7I4T5]
ENSCJAG00000021509	NOVEL	protein_coding	ENSCJAG00000021509	chromosome:C_jacchus3.2.1:5:1:159171411:1	31514024	31514502	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040050}  [Source:UniProtKB/TrEMBL;Acc:F7IJB0]
ENSCJAG00000014816	NOVEL	pseudogene	ENSCJAG00000014816	chromosome:C_jacchus3.2.1:1:1:210400635:1	82772525	82773409	D	<no descrition>
ENSCJAG00000031475	NOVEL	pseudogene	ENSCJAG00000031475	chromosome:C_jacchus3.2.1:1:1:210400635:1	82551867	82552933	R	<no descrition>
ENSCJAG00000015100	KNOWN	protein_coding	TXNL4B	chromosome:C_jacchus3.2.1:20:1:44557958:1	26221807	26225461	D	Thioredoxin-like protein 4B {ECO:0000313|EMBL:JAB03531.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027820}  [Source:UniProtKB/TrEMBL;Acc:F7GNU1]
ENSCJAG00000002788	KNOWN	protein_coding	CLIC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32298653	32305554	R	Chloride intracellular channel protein 1 {ECO:0000313|EMBL:JAB13905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005108}  [Source:UniProtKB/TrEMBL;Acc:F7IM19]
ENSCJAG00000003072	KNOWN_BY_PROJECTION	protein_coding	ANXA5	chromosome:C_jacchus3.2.1:3:1:190850796:1	72301213	72331174	D	annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]
ENSCJAG00000021511	KNOWN_BY_PROJECTION	protein_coding	NNAT	chromosome:C_jacchus3.2.1:5:1:159171411:1	31505287	31507741	D	neuronatin [Source:HGNC Symbol;Acc:HGNC:7860]
ENSCJAG00000004826	KNOWN_BY_PROJECTION	protein_coding	TUBB6	chromosome:C_jacchus3.2.1:13:1:117903854:1	43431419	43449333	D	tubulin, beta 6 class V [Source:HGNC Symbol;Acc:HGNC:20776]
ENSCJAG00000021510	KNOWN_BY_PROJECTION	protein_coding	BLCAP	chromosome:C_jacchus3.2.1:5:1:159171411:1	31501483	31511860	R	bladder cancer associated protein [Source:HGNC Symbol;Acc:HGNC:1055]
ENSCJAG00000019542	KNOWN	protein_coding	THYN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	32487959	32492890	R	Thymocyte nuclear protein 1 isoform 1 {ECO:0000313|EMBL:JAB02151.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044847}  [Source:UniProtKB/TrEMBL;Acc:F7CZ83]
ENSCJAG00000018621	KNOWN	protein_coding	AMACR	chromosome:C_jacchus3.2.1:2:1:204313951:1	169281961	169301525	D	Alpha-methylacyl-CoA racemase isoform 1 {ECO:0000313|EMBL:JAB24231.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034581}  [Source:UniProtKB/TrEMBL;Acc:F7I3Q5]
ENSCJAG00000004814	KNOWN	protein_coding	CIDEA	chromosome:C_jacchus3.2.1:13:1:117903854:1	43369457	43392200	D	Cell death activator CIDE-A isoform 1 {ECO:0000313|EMBL:JAB09412.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008796}  [Source:UniProtKB/TrEMBL;Acc:F7IRZ3]
ENSCJAG00000015103	KNOWN_BY_PROJECTION	protein_coding	DHX38	chromosome:C_jacchus3.2.1:20:1:44557958:1	26198998	26216924	R	DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Source:HGNC Symbol;Acc:HGNC:17211]
ENSCJAG00000019546	NOVEL	protein_coding	ENSCJAG00000019546	chromosome:C_jacchus3.2.1:11:1:130397257:1	32473022	32484988	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036330}  [Source:UniProtKB/TrEMBL;Acc:F7H351]
ENSCJAG00000004810	KNOWN_BY_PROJECTION	protein_coding	ANKRD62	chromosome:C_jacchus3.2.1:13:1:117903854:1	43173932	43228934	D	ankyrin repeat domain 62 [Source:HGNC Symbol;Acc:HGNC:35241]
ENSCJAG00000021512	KNOWN	protein_coding	SRC	chromosome:C_jacchus3.2.1:5:1:159171411:1	31363988	31383181	D	Proto-oncogene tyrosine-protein kinase Src {ECO:0000313|EMBL:JAB16480.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040054}  [Source:UniProtKB/TrEMBL;Acc:F7IJA6]
ENSCJAG00000002823	KNOWN	protein_coding	DDAH2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32295088	32298339	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005157}  [Source:UniProtKB/TrEMBL;Acc:F7IHD9]
ENSCJAG00000011171	KNOWN_BY_PROJECTION	protein_coding	FAM210A	chromosome:C_jacchus3.2.1:13:1:117903854:1	43138999	43151035	D	family with sequence similarity 210, member A [Source:HGNC Symbol;Acc:HGNC:28346]
ENSCJAG00000021513	KNOWN	protein_coding	MANBAL	chromosome:C_jacchus3.2.1:5:1:159171411:1	31264786	31290506	D	Protein MANBAL {ECO:0000313|EMBL:JAB04125.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040058}  [Source:UniProtKB/TrEMBL;Acc:F7IJA3]
ENSCJAG00000021515	KNOWN_BY_PROJECTION	protein_coding	GHRH	chromosome:C_jacchus3.2.1:5:1:159171411:1	31225827	31239676	R	growth hormone releasing hormone [Source:HGNC Symbol;Acc:HGNC:4265]
ENSCJAG00000003069	KNOWN_BY_PROJECTION	protein_coding	TMEM155	chromosome:C_jacchus3.2.1:3:1:190850796:1	72221396	72227624	D	transmembrane protein 155 [Source:HGNC Symbol;Acc:HGNC:26418]
ENSCJAG00000018612	NOVEL	protein_coding	ENSCJAG00000018612	chromosome:C_jacchus3.2.1:2:1:204313951:1	169247071	169273354	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025554}  [Source:UniProtKB/TrEMBL;Acc:F6XTB5]
ENSCJAG00000019563	KNOWN	protein_coding	NCAPD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	32383743	32462937	R	Condensin-2 complex subunit D3 {ECO:0000313|EMBL:JAB19832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036372}  [Source:UniProtKB/TrEMBL;Acc:F7GMQ0]
ENSCJAG00000008965	KNOWN_BY_PROJECTION	protein_coding	RNMT	chromosome:C_jacchus3.2.1:13:1:117903854:1	43053889	43091742	R	RNA (guanine-7-) methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]
ENSCJAG00000019593	KNOWN_BY_PROJECTION	protein_coding	JAM3	chromosome:C_jacchus3.2.1:11:1:130397257:1	32371383	32380590	D	junctional adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:15532]
ENSCJAG00000018539	KNOWN	protein_coding	RAI14	chromosome:C_jacchus3.2.1:2:1:204313951:1	168764465	168956017	R	Ankycorbin isoform a {ECO:0000313|EMBL:JAB24025.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034555}  [Source:UniProtKB/TrEMBL;Acc:F7I652]
ENSCJAG00000019601	NOVEL	pseudogene	ENSCJAG00000019601	chromosome:C_jacchus3.2.1:11:1:130397257:1	32268377	32268801	D	<no descrition>
ENSCJAG00000022589	KNOWN_BY_PROJECTION	protein_coding	MC2R	chromosome:C_jacchus3.2.1:13:1:117903854:1	42836687	42866733	D	melanocortin 2 receptor (adrenocorticotropic hormone) [Source:HGNC Symbol;Acc:HGNC:6930]
ENSCJAG00000017587	NOVEL	protein_coding	ENSCJAG00000017587	chromosome:C_jacchus3.2.1:13:1:117903854:1	42536233	42542733	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032408}  [Source:UniProtKB/TrEMBL;Acc:F7ES79]
ENSCJAG00000007935	KNOWN	protein_coding	CD63	chromosome:C_jacchus3.2.1:9:1:124281992:1	44520748	44524939	R	CD63 antigen isoform A {ECO:0000313|EMBL:JAB24862.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014792}  [Source:UniProtKB/TrEMBL;Acc:F7IG70]
ENSCJAG00000031829	KNOWN_BY_PROJECTION	protein_coding	PMFBP1	chromosome:C_jacchus3.2.1:20:1:44557958:1	26139868	26192230	D	polyamine modulated factor 1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17728]
ENSCJAG00000003561	KNOWN_BY_PROJECTION	protein_coding	HGSNAT	chromosome:C_jacchus3.2.1:13:1:117903854:1	41307307	41352848	D	heparan-alpha-glucosaminide N-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:26527]
ENSCJAG00000018537	NOVEL	pseudogene	ENSCJAG00000018537	chromosome:C_jacchus3.2.1:2:1:204313951:1	168721608	168722035	D	<no descrition>
ENSCJAG00000003507	KNOWN	protein_coding	FNTA	chromosome:C_jacchus3.2.1:13:1:117903854:1	41176185	41225937	D	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha {ECO:0000313|EMBL:JAB10991.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006443}  [Source:UniProtKB/TrEMBL;Acc:F7H177]
ENSCJAG00000003038	KNOWN	protein_coding	EXOSC9	chromosome:C_jacchus3.2.1:3:1:190850796:1	72169109	72183963	R	Exosome complex component RRP45 isoform 2 {ECO:0000313|EMBL:JAB07564.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005555}  [Source:UniProtKB/TrEMBL;Acc:F7IJD9]
ENSCJAG00000015112	KNOWN_BY_PROJECTION	protein_coding	ZFHX3	chromosome:C_jacchus3.2.1:20:1:44557958:1	25288382	25481606	D	zinc finger homeobox 3 [Source:HGNC Symbol;Acc:HGNC:777]
ENSCJAG00000014822	KNOWN_BY_PROJECTION	protein_coding	AGTPBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	82533036	82720998	D	ATP/GTP binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17258]
ENSCJAG00000015127	NOVEL	protein_coding	ENSCJAG00000015127	chromosome:C_jacchus3.2.1:20:1:44557958:1	25139169	25140569	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027879}  [Source:UniProtKB/TrEMBL;Acc:F7FRS6]
ENSCJAG00000008011	KNOWN	protein_coding	RDH5	chromosome:C_jacchus3.2.1:9:1:124281992:1	44515879	44689191	D	11-cis retinol dehydrogenase {ECO:0000313|EMBL:JAB06352.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014816}  [Source:UniProtKB/TrEMBL;Acc:F7IBF6]
ENSCJAG00000018655	KNOWN_BY_PROJECTION	protein_coding	UACA	chromosome:C_jacchus3.2.1:10:1:132174527:1	13138036	13237635	R	uveal autoantigen with coiled-coil domains and ankyrin repeats [Source:HGNC Symbol;Acc:HGNC:15947]
ENSCJAG00000003487	KNOWN_BY_PROJECTION	protein_coding	HOOK3	chromosome:C_jacchus3.2.1:13:1:117903854:1	41024872	41148623	D	hook microtubule-tethering protein 3 [Source:HGNC Symbol;Acc:HGNC:23576]
ENSCJAG00000003023	KNOWN	protein_coding	CCNA2	chromosome:C_jacchus3.2.1:3:1:190850796:1	72162206	72169494	D	Cyclin-A2 {ECO:0000313|EMBL:JAB07565.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005501}  [Source:UniProtKB/TrEMBL;Acc:F7ILU7]
ENSCJAG00000008026	NOVEL	protein_coding	ENSCJAG00000008026	chromosome:C_jacchus3.2.1:9:1:124281992:1	44510982	44515230	D	<no descrition>
ENSCJAG00000003476	KNOWN	protein_coding	RNF170	chromosome:C_jacchus3.2.1:13:1:117903854:1	40979171	41024427	R	E3 ubiquitin-protein ligase RNF170 isoform a {ECO:0000313|EMBL:JAB02850.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006325}  [Source:UniProtKB/TrEMBL;Acc:F7F4R2]
ENSCJAG00000003466	KNOWN	protein_coding	THAP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	40956888	40962492	R	THAP domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB08406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006304}  [Source:UniProtKB/TrEMBL;Acc:F7F581]
ENSCJAG00000008078	KNOWN_BY_PROJECTION	protein_coding	ZMAT4	chromosome:C_jacchus3.2.1:13:1:117903854:1	40790523	40863471	R	zinc finger, matrin-type 4 [Source:HGNC Symbol;Acc:HGNC:25844]
ENSCJAG00000008075	NOVEL	protein_coding	ENSCJAG00000008075	chromosome:C_jacchus3.2.1:13:1:117903854:1	40721773	40722102	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014911}  [Source:UniProtKB/TrEMBL;Acc:F7HX91]
ENSCJAG00000021517	KNOWN	protein_coding	RPN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	31160874	31224112	D	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform 1 {ECO:0000313|EMBL:JAB06983.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040065}  [Source:UniProtKB/TrEMBL;Acc:F7IJ88]
ENSCJAG00000008061	KNOWN	protein_coding	SMIM19	chromosome:C_jacchus3.2.1:13:1:117903854:1	40622426	40631722	D	UPF0697 protein C8orf40 {ECO:0000313|EMBL:JAB43530.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050062}  [Source:UniProtKB/TrEMBL;Acc:F7FD34]
ENSCJAG00000008056	NOVEL	pseudogene	ENSCJAG00000008056	chromosome:C_jacchus3.2.1:13:1:117903854:1	40585810	40586099	D	<no descrition>
ENSCJAG00000014932	NOVEL	pseudogene	ENSCJAG00000014932	chromosome:C_jacchus3.2.1:1:1:210400635:1	82475016	82475470	R	<no descrition>
ENSCJAG00000002464	NOVEL	protein_coding	ENSCJAG00000002464	chromosome:C_jacchus3.2.1:1:1:210400635:1	82442450	82443544	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004492}  [Source:UniProtKB/TrEMBL;Acc:F6W831]
ENSCJAG00000018521	KNOWN_BY_PROJECTION	protein_coding	TTC23L	chromosome:C_jacchus3.2.1:2:1:204313951:1	168701093	168750289	R	tetratricopeptide repeat domain 23-like [Source:HGNC Symbol;Acc:HGNC:26355]
ENSCJAG00000019608	KNOWN_BY_PROJECTION	protein_coding	IGSF9B	chromosome:C_jacchus3.2.1:11:1:130397257:1	32145465	32181662	R	immunoglobulin superfamily, member 9B [Source:HGNC Symbol;Acc:HGNC:32326]
ENSCJAG00000033877	NOVEL	protein_coding	ENSCJAG00000033877	chromosome:C_jacchus3.2.1:11:1:130397257:1	32081880	32082496	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045525}  [Source:UniProtKB/TrEMBL;Acc:F6TFB3]
ENSCJAG00000008029	KNOWN	protein_coding	SLC20A2	chromosome:C_jacchus3.2.1:13:1:117903854:1	40496920	40622762	R	Sodium-dependent phosphate transporter 2 {ECO:0000313|EMBL:JAB32875.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014875}  [Source:UniProtKB/TrEMBL;Acc:F7I4B5]
ENSCJAG00000001012	KNOWN_BY_PROJECTION	protein_coding	SPATA19	chromosome:C_jacchus3.2.1:11:1:130397257:1	32039140	32044692	R	spermatogenesis associated 19 [Source:HGNC Symbol;Acc:HGNC:30614]
ENSCJAG00000002843	KNOWN_BY_PROJECTION	protein_coding	C6orf25	chromosome:C_jacchus3.2.1:4:1:171630274:1	32291298	32292989	D	chromosome 6 open reading frame 25 [Source:HGNC Symbol;Acc:HGNC:13937]
ENSCJAG00000009613	KNOWN_BY_PROJECTION	protein_coding	OPCML	chromosome:C_jacchus3.2.1:11:1:130397257:1	30521873	30775880	R	opioid binding protein/cell adhesion molecule-like [Source:HGNC Symbol;Acc:HGNC:8143]
ENSCJAG00000011611	KNOWN	protein_coding	HKR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	31092629	31122167	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021335}; Zinc finger protein 337 {ECO:0000313|EMBL:JAB46426.1}  [Source:UniProtKB/TrEMBL;Acc:F6PK53]
ENSCJAG00000008002	KNOWN	protein_coding	VDAC3	chromosome:C_jacchus3.2.1:13:1:117903854:1	40475431	40488073	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014805}  [Source:UniProtKB/TrEMBL;Acc:F7IBH0]
ENSCJAG00000011623	KNOWN_BY_PROJECTION	protein_coding	NANP	chromosome:C_jacchus3.2.1:5:1:159171411:1	31029165	31041463	R	N-acetylneuraminic acid phosphatase [Source:HGNC Symbol;Acc:HGNC:16140]
ENSCJAG00000002878	KNOWN_BY_PROJECTION	protein_coding	RNF40	chromosome:C_jacchus3.2.1:12:1:121768101:1	28698612	28711854	D	ring finger protein 40, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:16867]
ENSCJAG00000009606	KNOWN	protein_coding	NTM	chromosome:C_jacchus3.2.1:11:1:130397257:1	30315787	30462795	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017596}  [Source:UniProtKB/TrEMBL;Acc:F7I7L8]
ENSCJAG00000007996	KNOWN_BY_PROJECTION	protein_coding	DKK4	chromosome:C_jacchus3.2.1:13:1:117903854:1	40460650	40463740	R	dickkopf WNT signaling pathway inhibitor 4 [Source:HGNC Symbol;Acc:HGNC:2894]
ENSCJAG00000007994	NOVEL	pseudogene	ENSCJAG00000007994	chromosome:C_jacchus3.2.1:13:1:117903854:1	40436815	40437767	R	<no descrition>
ENSCJAG00000015129	KNOWN	protein_coding	PSMD7	chromosome:C_jacchus3.2.1:20:1:44557958:1	23858994	23869970	R	26S proteasome non-ATPase regulatory subunit 7 {ECO:0000313|EMBL:JAB05662.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043954}  [Source:UniProtKB/TrEMBL;Acc:F7IRF2]
ENSCJAG00000018514	KNOWN_BY_PROJECTION	protein_coding	RAD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	168664813	168672174	D	RAD1 checkpoint DNA exonuclease [Source:HGNC Symbol;Acc:HGNC:9806]
ENSCJAG00000002883	KNOWN_BY_PROJECTION	protein_coding	LY6G6C	chromosome:C_jacchus3.2.1:4:1:171630274:1	32285197	32289621	R	lymphocyte antigen 6 complex, locus G6C [Source:HGNC Symbol;Acc:HGNC:13936]
ENSCJAG00000014933	KNOWN	protein_coding	NAA35	chromosome:C_jacchus3.2.1:1:1:210400635:1	82354338	82439895	R	N-alpha-acetyltransferase 35, NatC auxiliary subunit {ECO:0000313|EMBL:JAB09540.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027611}  [Source:UniProtKB/TrEMBL;Acc:F7H4H8]
ENSCJAG00000002898	NOVEL	protein_coding	ENSCJAG00000002898	chromosome:C_jacchus3.2.1:4:1:171630274:1	32281605	32284003	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005261}  [Source:UniProtKB/TrEMBL;Acc:F7HYF4]
ENSCJAG00000011624	KNOWN_BY_PROJECTION	protein_coding	NINL	chromosome:C_jacchus3.2.1:5:1:159171411:1	30856347	30995101	R	ninein-like [Source:HGNC Symbol;Acc:HGNC:29163]
ENSCJAG00000007917	KNOWN	protein_coding	POLB	chromosome:C_jacchus3.2.1:13:1:117903854:1	40424137	40458468	D	DNA polymerase beta {ECO:0000313|EMBL:JAB19219.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014753}  [Source:UniProtKB/TrEMBL;Acc:F7IKW6]
ENSCJAG00000018506	KNOWN	protein_coding	BRIX1	chromosome:C_jacchus3.2.1:2:1:204313951:1	168655070	168664771	R	Ribosome biogenesis protein BRX1 homolog {ECO:0000313|EMBL:JAB03107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034332}  [Source:UniProtKB/TrEMBL;Acc:F6YS13]
ENSCJAG00000011640	KNOWN	protein_coding	GINS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	30811775	30847676	D	DNA replication complex GINS protein PSF1 {ECO:0000313|EMBL:JAB02788.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021396}  [Source:UniProtKB/TrEMBL;Acc:F6SW52]
ENSCJAG00000037033	NOVEL	protein_coding	ENSCJAG00000037033	chromosome:C_jacchus3.2.1:4:1:171630274:1	32278790	32279997	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005267}  [Source:UniProtKB/TrEMBL;Acc:F7HYE8]
ENSCJAG00000014995	NOVEL	protein_coding	ENSCJAG00000014995	chromosome:C_jacchus3.2.1:1:1:210400635:1	82323682	82346635	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027625}  [Source:UniProtKB/TrEMBL;Acc:F7GZF2]
ENSCJAG00000013415	NOVEL	protein_coding	ENSCJAG00000013415	chromosome:C_jacchus3.2.1:1:1:210400635:1	82278515	82280901	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009623}  [Source:UniProtKB/TrEMBL;Acc:F7GBJ2]
ENSCJAG00000035013	NOVEL	protein_coding	ENSCJAG00000035013	chromosome:C_jacchus3.2.1:1:1:210400635:1	82096094	82097195	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049340}  [Source:UniProtKB/TrEMBL;Acc:F6YYX3]
ENSCJAG00000018495	KNOWN	protein_coding	DNAJC21	chromosome:C_jacchus3.2.1:2:1:204313951:1	168623894	168649544	R	DnaJ homolog subfamily C member 21 isoform 2 {ECO:0000313|EMBL:JAB03425.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034304}  [Source:UniProtKB/TrEMBL;Acc:F6ZSC0]
ENSCJAG00000011654	KNOWN	protein_coding	ABHD12	chromosome:C_jacchus3.2.1:5:1:159171411:1	30712006	30806219	R	Monoacylglycerol lipase ABHD12 isoform a {ECO:0000313|EMBL:JAB11614.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021449}  [Source:UniProtKB/TrEMBL;Acc:F6RM52]
ENSCJAG00000011324	NOVEL	pseudogene	ENSCJAG00000011324	chromosome:C_jacchus3.2.1:1:1:210400635:1	82084397	82085560	R	<no descrition>
ENSCJAG00000011331	NOVEL	protein_coding	ENSCJAG00000011331	chromosome:C_jacchus3.2.1:1:1:210400635:1	81986315	81987524	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020838}  [Source:UniProtKB/TrEMBL;Acc:F7EQT0]
ENSCJAG00000011332	NOVEL	pseudogene	ENSCJAG00000011332	chromosome:C_jacchus3.2.1:1:1:210400635:1	81982184	81982686	R	<no descrition>
ENSCJAG00000002856	KNOWN_BY_PROJECTION	protein_coding	C16orf93	chromosome:C_jacchus3.2.1:12:1:121768101:1	28693402	28698378	R	chromosome 16 open reading frame 93 [Source:HGNC Symbol;Acc:HGNC:28078]
ENSCJAG00000009574	KNOWN	protein_coding	SNX19	chromosome:C_jacchus3.2.1:11:1:130397257:1	29005287	29042707	R	Sorting nexin-19 {ECO:0000313|EMBL:JAB02732.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017580}  [Source:UniProtKB/TrEMBL;Acc:F7I9Y9]
ENSCJAG00000007805	KNOWN	protein_coding	IKBKB	chromosome:C_jacchus3.2.1:13:1:117903854:1	40355935	40415444	D	Inhibitor of nuclear factor kappa-B kinase subunit beta isoform 1 {ECO:0000313|EMBL:JAB04084.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014640}  [Source:UniProtKB/TrEMBL;Acc:F7I235]
ENSCJAG00000018485	KNOWN_BY_PROJECTION	protein_coding	AGXT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	168533746	168579980	D	alanine--glyoxylate aminotransferase 2 [Source:HGNC Symbol;Acc:HGNC:14412]
ENSCJAG00000032718	NOVEL	protein_coding	ENSCJAG00000032718	chromosome:C_jacchus3.2.1:1:1:210400635:1	81914096	81915375	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043775}  [Source:UniProtKB/TrEMBL;Acc:F7IP57]
ENSCJAG00000034271	NOVEL	protein_coding	ENSCJAG00000034271	chromosome:C_jacchus3.2.1:1:1:210400635:1	81885368	81886478	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011865}  [Source:UniProtKB/TrEMBL;Acc:F7HHY4]
ENSCJAG00000009569	KNOWN_BY_PROJECTION	protein_coding	C11orf44	chromosome:C_jacchus3.2.1:11:1:130397257:1	28780453	28825954	D	chromosome 11 open reading frame 44 [Source:HGNC Symbol;Acc:HGNC:26805]
ENSCJAG00000003015	KNOWN	protein_coding	BBS7	chromosome:C_jacchus3.2.1:3:1:190850796:1	72112801	72161666	D	Bardet-Biedl syndrome 7 protein isoform a {ECO:0000313|EMBL:JAB06441.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005467}  [Source:UniProtKB/TrEMBL;Acc:F7HY94]
ENSCJAG00000015149	KNOWN_BY_PROJECTION	protein_coding	WWP2	chromosome:C_jacchus3.2.1:20:1:44557958:1	23651082	23832482	D	WW domain containing E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16804]
ENSCJAG00000011340	NOVEL	protein_coding	ENSCJAG00000011340	chromosome:C_jacchus3.2.1:1:1:210400635:1	81783673	81804261	R	<no descrition>
ENSCJAG00000034008	NOVEL	protein_coding	ENSCJAG00000034008	chromosome:C_jacchus3.2.1:1:1:210400635:1	81664729	81668085	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003345}  [Source:UniProtKB/TrEMBL;Acc:F7EA68]
ENSCJAG00000004586	NOVEL	pseudogene	ENSCJAG00000004586	chromosome:C_jacchus3.2.1:1:1:210400635:1	81479510	81481381	R	<no descrition>
ENSCJAG00000009521	KNOWN_BY_PROJECTION	protein_coding	ADAMTS15	chromosome:C_jacchus3.2.1:11:1:130397257:1	28558513	28583670	D	ADAM metallopeptidase with thrombospondin type 1 motif, 15 [Source:HGNC Symbol;Acc:HGNC:16305]
ENSCJAG00000018457	KNOWN_BY_PROJECTION	protein_coding	PRLR	chromosome:C_jacchus3.2.1:2:1:204313951:1	168352448	168532943	D	prolactin receptor [Source:HGNC Symbol;Acc:HGNC:9446]
ENSCJAG00000002822	KNOWN_BY_PROJECTION	protein_coding	PHKG2	chromosome:C_jacchus3.2.1:12:1:121768101:1	28682367	28693293	D	phosphorylase kinase, gamma 2 (testis) [Source:HGNC Symbol;Acc:HGNC:8931]
ENSCJAG00000009481	KNOWN_BY_PROJECTION	protein_coding	ADAMTS8	chromosome:C_jacchus3.2.1:11:1:130397257:1	28513150	28536518	R	ADAM metallopeptidase with thrombospondin type 1 motif, 8 [Source:HGNC Symbol;Acc:HGNC:224]
ENSCJAG00000009480	NOVEL	protein_coding	ENSCJAG00000009480	chromosome:C_jacchus3.2.1:11:1:130397257:1	28500526	28508792	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017351}  [Source:UniProtKB/TrEMBL;Acc:F7ICG4]
ENSCJAG00000009451	KNOWN	protein_coding	ZBTB44	chromosome:C_jacchus3.2.1:11:1:130397257:1	28333726	28425612	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017347}; Zinc finger and BTB domain-containing protein 44 {ECO:0000313|EMBL:JAB04496.1}  [Source:UniProtKB/TrEMBL;Acc:F7IEU7]
ENSCJAG00000011698	KNOWN	protein_coding	PYGB	chromosome:C_jacchus3.2.1:5:1:159171411:1	30658263	30715247	D	Phosphorylase {ECO:0000256|RuleBase:RU000587}  [Source:UniProtKB/TrEMBL;Acc:F6STU1]
ENSCJAG00000002975	KNOWN	protein_coding	TRPC3	chromosome:C_jacchus3.2.1:3:1:190850796:1	72011601	72104822	D	Short transient receptor potential channel 3 isoform a {ECO:0000313|EMBL:JAB41905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005448}  [Source:UniProtKB/TrEMBL;Acc:F7I0N9]
ENSCJAG00000009434	KNOWN_BY_PROJECTION	protein_coding	ST14	chromosome:C_jacchus3.2.1:11:1:130397257:1	28296136	28316391	D	suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
ENSCJAG00000009431	NOVEL	pseudogene	ENSCJAG00000009431	chromosome:C_jacchus3.2.1:11:1:130397257:1	28191907	28193271	D	<no descrition>
ENSCJAG00000015230	KNOWN	protein_coding	NOB1	chromosome:C_jacchus3.2.1:20:1:44557958:1	23629718	23642139	R	RNA-binding protein NOB1 {ECO:0000313|EMBL:JAB03605.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028089}  [Source:UniProtKB/TrEMBL;Acc:F6UJS5]
ENSCJAG00000011772	KNOWN_BY_PROJECTION	protein_coding	ENTPD6	chromosome:C_jacchus3.2.1:5:1:159171411:1	30614918	30636394	D	ectonucleoside triphosphate diphosphohydrolase 6 (putative) [Source:HGNC Symbol;Acc:HGNC:3368]
ENSCJAG00000007769	KNOWN	protein_coding	PLAT	chromosome:C_jacchus3.2.1:13:1:117903854:1	40260077	40293246	R	Tissue-type plasminogen activator isoform 1 preproprotein {ECO:0000313|EMBL:JAB08685.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045035}  [Source:UniProtKB/TrEMBL;Acc:F6TUX3]
ENSCJAG00000006918	KNOWN	protein_coding	TLE3	chromosome:C_jacchus3.2.1:10:1:132174527:1	12509477	12559545	R	Transducin-like enhancer protein 3 isoform a {ECO:0000313|EMBL:JAB06536.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013027}  [Source:UniProtKB/TrEMBL;Acc:F7B2J0]
ENSCJAG00000015244	KNOWN	protein_coding	NQO1	chromosome:C_jacchus3.2.1:20:1:44557958:1	23474467	23622763	R	NAD(P)H dehydrogenase [quinone] 1 isoform a {ECO:0000313|EMBL:JAB37034.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003904}  [Source:UniProtKB/TrEMBL;Acc:F7EKA7]
ENSCJAG00000008045	KNOWN	protein_coding	ITGA7	chromosome:C_jacchus3.2.1:9:1:124281992:1	44481884	44508303	R	Integrin alpha-7 isoform 2 {ECO:0000313|EMBL:JAB20825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015135}  [Source:UniProtKB/TrEMBL;Acc:F7DFJ8]
ENSCJAG00000004536	NOVEL	protein_coding	ENSCJAG00000004536	chromosome:C_jacchus3.2.1:1:1:210400635:1	81464612	81744380	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051014}  [Source:UniProtKB/TrEMBL;Acc:F7CIV6]
ENSCJAG00000033089	NOVEL	protein_coding	ENSCJAG00000033089	chromosome:C_jacchus3.2.1:5:1:159171411:1	30480150	30481675	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047875}  [Source:UniProtKB/TrEMBL;Acc:F7GRW8]
ENSCJAG00000011818	KNOWN_BY_PROJECTION	protein_coding	VSX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	30486859	30493699	R	visual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]
ENSCJAG00000015262	KNOWN	protein_coding	NFAT5	chromosome:C_jacchus3.2.1:20:1:44557958:1	23441516	23570835	D	Nuclear factor of activated T-cells 5 isoform c {ECO:0000313|EMBL:JAB31948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028221}  [Source:UniProtKB/TrEMBL;Acc:F6XG69]
ENSCJAG00000018456	NOVEL	protein_coding	ENSCJAG00000018456	chromosome:C_jacchus3.2.1:2:1:204313951:1	168282793	168283661	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034202}  [Source:UniProtKB/TrEMBL;Acc:F6UMU9]
ENSCJAG00000007036	NOVEL	pseudogene	ENSCJAG00000007036	chromosome:C_jacchus3.2.1:10:1:132174527:1	12025854	12026923	R	<no descrition>
ENSCJAG00000032919	KNOWN_BY_PROJECTION	protein_coding	RPLP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	11889462	11891995	D	ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:HGNC:10372]
ENSCJAG00000015334	KNOWN	protein_coding	CYB5B	chromosome:C_jacchus3.2.1:20:1:44557958:1	23296629	23332620	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028230}  [Source:UniProtKB/TrEMBL;Acc:F6WUM8]
ENSCJAG00000011837	KNOWN_BY_PROJECTION	protein_coding	ACSS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	30417663	30436386	R	acyl-CoA synthetase short-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:16091]
ENSCJAG00000007038	KNOWN_BY_PROJECTION	protein_coding	KIF23	chromosome:C_jacchus3.2.1:10:1:132174527:1	11851626	11883757	D	kinesin family member 23 [Source:HGNC Symbol;Acc:HGNC:6392]
ENSCJAG00000007751	KNOWN	protein_coding	AP3M2	chromosome:C_jacchus3.2.1:13:1:117903854:1	40238039	40256397	D	AP-3 complex subunit mu-2 {ECO:0000313|EMBL:JAB08482.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014383}  [Source:UniProtKB/TrEMBL;Acc:F7I9D9]
ENSCJAG00000015339	KNOWN_BY_PROJECTION	protein_coding	TERF2	chromosome:C_jacchus3.2.1:20:1:44557958:1	23214602	23246907	R	telomeric repeat binding factor 2 [Source:HGNC Symbol;Acc:HGNC:11729]
ENSCJAG00000007747	NOVEL	protein_coding	ENSCJAG00000007747	chromosome:C_jacchus3.2.1:13:1:117903854:1	40215612	40216432	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014351}  [Source:UniProtKB/TrEMBL;Acc:F7IE26]
ENSCJAG00000008201	KNOWN_BY_PROJECTION	protein_coding	METTL7B	chromosome:C_jacchus3.2.1:9:1:124281992:1	44478407	44481236	D	methyltransferase like 7B [Source:HGNC Symbol;Acc:HGNC:28276]
ENSCJAG00000033870	NOVEL	protein_coding	ENSCJAG00000033870	chromosome:C_jacchus3.2.1:9:1:124281992:1	44431332	44432057	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048658}  [Source:UniProtKB/TrEMBL;Acc:F6T0G9]
ENSCJAG00000007737	NOVEL	protein_coding	ENSCJAG00000007737	chromosome:C_jacchus3.2.1:13:1:117903854:1	40184067	40184505	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014346}  [Source:UniProtKB/TrEMBL;Acc:F7IGG1]
ENSCJAG00000035369	NOVEL	protein_coding	ENSCJAG00000035369	chromosome:C_jacchus3.2.1:9:1:124281992:1	44325477	44343361	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7AG39]
ENSCJAG00000015355	KNOWN	protein_coding	TMED6	chromosome:C_jacchus3.2.1:20:1:44557958:1	23202264	23210150	R	Transmembrane emp24 domain-containing protein 6 {ECO:0000313|EMBL:JAB02514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028277}  [Source:UniProtKB/TrEMBL;Acc:F6V4J6]
ENSCJAG00000022579	KNOWN_BY_PROJECTION	protein_coding	OR10A7	chromosome:C_jacchus3.2.1:9:1:124281992:1	44126826	44129087	D	olfactory receptor, family 10, subfamily A, member 7 [Source:HGNC Symbol;Acc:HGNC:15329]
ENSCJAG00000022577	NOVEL	protein_coding	ENSCJAG00000022577	chromosome:C_jacchus3.2.1:9:1:124281992:1	44112839	44144778	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6VLP5]
ENSCJAG00000011868	KNOWN	protein_coding	APMAP	chromosome:C_jacchus3.2.1:5:1:159171411:1	30378948	30405945	R	Adipocyte plasma membrane-associated protein {ECO:0000313|EMBL:JAB06964.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021801}  [Source:UniProtKB/TrEMBL;Acc:F6S5S8]
ENSCJAG00000007709	KNOWN	protein_coding	CHRNB3	chromosome:C_jacchus3.2.1:13:1:117903854:1	40061824	40102571	R	Neuronal acetylcholine receptor subunit beta-3 {ECO:0000313|EMBL:JAB29547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014325}  [Source:UniProtKB/TrEMBL;Acc:F7IIU5]
ENSCJAG00000019126	NOVEL	pseudogene	ENSCJAG00000019126	chromosome:C_jacchus3.2.1:9:1:124281992:1	44055196	44056132	R	<no descrition>
ENSCJAG00000019123	KNOWN_BY_PROJECTION	protein_coding	NEUROD4	chromosome:C_jacchus3.2.1:9:1:124281992:1	43978703	43988742	D	neuronal differentiation 4 [Source:HGNC Symbol;Acc:HGNC:13802]
ENSCJAG00000031683	NOVEL	protein_coding	ENSCJAG00000031683	chromosome:C_jacchus3.2.1:5:1:159171411:1	29952381	30151386	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045700}  [Source:UniProtKB/TrEMBL;Acc:F6TQ27]
ENSCJAG00000007684	KNOWN_BY_PROJECTION	protein_coding	CHRNA6	chromosome:C_jacchus3.2.1:13:1:117903854:1	40029327	40045458	D	cholinergic receptor, nicotinic, alpha 6 (neuronal) [Source:HGNC Symbol;Acc:HGNC:15963]
ENSCJAG00000004593	NOVEL	pseudogene	ENSCJAG00000004593	chromosome:C_jacchus3.2.1:1:1:210400635:1	81373412	81374645	R	<no descrition>
ENSCJAG00000009124	NOVEL	pseudogene	ENSCJAG00000009124	chromosome:C_jacchus3.2.1:1:1:210400635:1	81223747	81224812	R	<no descrition>
ENSCJAG00000015364	KNOWN_BY_PROJECTION	protein_coding	NIP7	chromosome:C_jacchus3.2.1:20:1:44557958:1	23198686	23200618	D	NIP7, nucleolar pre-rRNA processing protein [Source:HGNC Symbol;Acc:HGNC:24328]
ENSCJAG00000004604	NOVEL	pseudogene	ENSCJAG00000004604	chromosome:C_jacchus3.2.1:1:1:210400635:1	81079815	81080357	R	<no descrition>
ENSCJAG00000031722	NOVEL	protein_coding	ENSCJAG00000031722	chromosome:C_jacchus3.2.1:1:1:210400635:1	81069858	81070840	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049228}  [Source:UniProtKB/TrEMBL;Acc:F6W236]
ENSCJAG00000031252	NOVEL	protein_coding	ENSCJAG00000031252	chromosome:C_jacchus3.2.1:1:1:210400635:1	81059406	81059767	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045263}  [Source:UniProtKB/TrEMBL;Acc:F6QGA8]
ENSCJAG00000037252	KNOWN	protein_coding	PDF	chromosome:C_jacchus3.2.1:20:1:44557958:1	23184509	23186468	R	Peptide deformylase, mitochondrial {ECO:0000313|EMBL:JAB31631.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028313}  [Source:UniProtKB/TrEMBL;Acc:F7BQP5]
ENSCJAG00000004608	NOVEL	pseudogene	ENSCJAG00000004608	chromosome:C_jacchus3.2.1:1:1:210400635:1	81058743	81059398	R	<no descrition>
ENSCJAG00000004314	NOVEL	protein_coding	ENSCJAG00000004314	chromosome:C_jacchus3.2.1:13:1:117903854:1	39913290	39913746	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007804}  [Source:UniProtKB/TrEMBL;Acc:F6UL78]
ENSCJAG00000031351	NOVEL	protein_coding	ENSCJAG00000031351	chromosome:C_jacchus3.2.1:1:1:210400635:1	81043326	81044551	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043374}  [Source:UniProtKB/TrEMBL;Acc:F7IPD2]
ENSCJAG00000004311	NOVEL	protein_coding	ENSCJAG00000004311	chromosome:C_jacchus3.2.1:13:1:117903854:1	39879727	39882219	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007800}  [Source:UniProtKB/TrEMBL;Acc:F6ULC1]
ENSCJAG00000032266	NOVEL	protein_coding	ENSCJAG00000032266	chromosome:C_jacchus3.2.1:5:1:159171411:1	29860043	30067337	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042011}  [Source:UniProtKB/TrEMBL;Acc:F6RUC1]
ENSCJAG00000004385	KNOWN_BY_PROJECTION	protein_coding	MARK4	chromosome:C_jacchus3.2.1:1:1:210400635:1	80000972	80003198	D	MAP/microtubule affinity-regulating kinase 4 [Source:HGNC Symbol;Acc:HGNC:13538]
ENSCJAG00000037422	KNOWN_BY_PROJECTION	protein_coding	CST5	chromosome:C_jacchus3.2.1:5:1:159171411:1	29362560	29468436	R	cystatin D [Source:HGNC Symbol;Acc:HGNC:2477]
ENSCJAG00000004378	NOVEL	protein_coding	ENSCJAG00000004378	chromosome:C_jacchus3.2.1:1:1:210400635:1	79983117	80016556	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007937}  [Source:UniProtKB/TrEMBL;Acc:F6ZR72]
ENSCJAG00000012618	NOVEL	pseudogene	ENSCJAG00000012618	chromosome:C_jacchus3.2.1:1:1:210400635:1	79916272	79917852	R	<no descrition>
ENSCJAG00000036809	KNOWN_BY_PROJECTION	protein_coding	CST3	chromosome:C_jacchus3.2.1:5:1:159171411:1	29362559	29366613	R	cystatin C [Source:HGNC Symbol;Acc:HGNC:2475]
ENSCJAG00000002760	KNOWN_BY_PROJECTION	protein_coding	SRCAP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28628570	28674711	D	Snf2-related CREBBP activator protein [Source:HGNC Symbol;Acc:HGNC:16974]
ENSCJAG00000015376	KNOWN	protein_coding	COG8	chromosome:C_jacchus3.2.1:20:1:44557958:1	23184509	23198531	R	Conserved oligomeric Golgi complex subunit 8 {ECO:0000313|EMBL:JAB05505.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028326}  [Source:UniProtKB/TrEMBL;Acc:F7B7U3]
ENSCJAG00000018398	KNOWN_BY_PROJECTION	protein_coding	SPEF2	chromosome:C_jacchus3.2.1:2:1:204313951:1	167757332	167966167	R	sperm flagellar 2 [Source:HGNC Symbol;Acc:HGNC:26293]
ENSCJAG00000004274	KNOWN_BY_PROJECTION	protein_coding	KAT6A	chromosome:C_jacchus3.2.1:13:1:117903854:1	39727280	39847821	R	K(lysine) acetyltransferase 6A [Source:HGNC Symbol;Acc:HGNC:13013]
ENSCJAG00000000687	KNOWN_BY_PROJECTION	protein_coding	CST9	chromosome:C_jacchus3.2.1:5:1:159171411:1	29334540	29336805	R	cystatin 9 (testatin) [Source:HGNC Symbol;Acc:HGNC:13261]
ENSCJAG00000000676	NOVEL	protein_coding	ENSCJAG00000000676	chromosome:C_jacchus3.2.1:5:1:159171411:1	29362556	29425675	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001159}  [Source:UniProtKB/TrEMBL;Acc:F6VIW1]
ENSCJAG00000032631	NOVEL	protein_coding	ENSCJAG00000032631	chromosome:C_jacchus3.2.1:5:1:159171411:1	29322324	29326494	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001187}  [Source:UniProtKB/TrEMBL;Acc:F6UBT8]
ENSCJAG00000000691	KNOWN_BY_PROJECTION	protein_coding	CST9L	chromosome:C_jacchus3.2.1:5:1:159171411:1	29312109	29316431	R	cystatin 9-like [Source:HGNC Symbol;Acc:HGNC:16233]
ENSCJAG00000000693	NOVEL	protein_coding	ENSCJAG00000000693	chromosome:C_jacchus3.2.1:5:1:159171411:1	29288324	29292064	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001190}  [Source:UniProtKB/TrEMBL;Acc:F7CGE2]
ENSCJAG00000000694	NOVEL	protein_coding	ENSCJAG00000000694	chromosome:C_jacchus3.2.1:5:1:159171411:1	29259323	29282204	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001191}  [Source:UniProtKB/TrEMBL;Acc:F7CGD6]
ENSCJAG00000007121	KNOWN_BY_PROJECTION	protein_coding	PAQR5	chromosome:C_jacchus3.2.1:10:1:132174527:1	11793383	11844348	D	progestin and adipoQ receptor family member V [Source:HGNC Symbol;Acc:HGNC:29645]
ENSCJAG00000007136	KNOWN	protein_coding	GLCE	chromosome:C_jacchus3.2.1:10:1:132174527:1	11628811	11718143	D	D-glucuronyl C5-epimerase {ECO:0000313|EMBL:JAB04651.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013271}  [Source:UniProtKB/TrEMBL;Acc:F6X8E1]
ENSCJAG00000015386	KNOWN	protein_coding	VPS4A	chromosome:C_jacchus3.2.1:20:1:44557958:1	23166867	23178838	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028370}; Vacuolar protein sorting-associated protein 4A {ECO:0000313|EMBL:JAB06923.1}  [Source:UniProtKB/TrEMBL;Acc:F6ZNA4]
ENSCJAG00000002747	KNOWN	protein_coding	FBRS	chromosome:C_jacchus3.2.1:12:1:121768101:1	28567420	28578046	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005006}  [Source:UniProtKB/TrEMBL;Acc:F7I3B3]
ENSCJAG00000000701	NOVEL	protein_coding	ENSCJAG00000000701	chromosome:C_jacchus3.2.1:5:1:159171411:1	29214859	29219109	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001201}  [Source:UniProtKB/TrEMBL;Acc:F6ZIF7]
ENSCJAG00000000697	KNOWN_BY_PROJECTION	protein_coding	CST8	chromosome:C_jacchus3.2.1:5:1:159171411:1	29223371	29230650	D	cystatin 8 (cystatin-related epididymal specific) [Source:HGNC Symbol;Acc:HGNC:2480]
ENSCJAG00000000703	KNOWN_BY_PROJECTION	protein_coding	CST11	chromosome:C_jacchus3.2.1:5:1:159171411:1	29184937	29187369	R	cystatin 11 [Source:HGNC Symbol;Acc:HGNC:15959]
ENSCJAG00000018379	KNOWN	protein_coding	IL7R	chromosome:C_jacchus3.2.1:2:1:204313951:1	167706659	167726757	R	Interleukin-7 receptor subunit alpha  [Source:UniProtKB/Swiss-Prot;Acc:A5HJM1]
ENSCJAG00000002708	KNOWN_BY_PROJECTION	protein_coding	PRR14	chromosome:C_jacchus3.2.1:12:1:121768101:1	28557645	28563322	D	proline rich 14 [Source:HGNC Symbol;Acc:HGNC:28458]
ENSCJAG00000004219	KNOWN	protein_coding	ANK1	chromosome:C_jacchus3.2.1:13:1:117903854:1	39426073	39688119	R	Ankyrin-1 isoform 5 {ECO:0000313|EMBL:JAB14249.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051201}  [Source:UniProtKB/TrEMBL;Acc:F6W4W4]
ENSCJAG00000009288	KNOWN	protein_coding	APLP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	28179896	28253288	D	Amyloid-like protein 2 isoform 1 {ECO:0000313|EMBL:JAB52674.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017257}  [Source:UniProtKB/TrEMBL;Acc:F7HW19]
ENSCJAG00000002702	KNOWN	protein_coding	ZNF689	chromosome:C_jacchus3.2.1:12:1:121768101:1	28509463	28516529	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004910}; Zinc finger protein 689 {ECO:0000313|EMBL:JAB08222.1}  [Source:UniProtKB/TrEMBL;Acc:F6UZS0]
ENSCJAG00000015408	KNOWN_BY_PROJECTION	protein_coding	SNTB2	chromosome:C_jacchus3.2.1:20:1:44557958:1	23029884	23156367	D	syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) [Source:HGNC Symbol;Acc:HGNC:11169]
ENSCJAG00000018371	KNOWN_BY_PROJECTION	protein_coding	CAPSL	chromosome:C_jacchus3.2.1:2:1:204313951:1	167656768	167667958	D	calcyphosine-like [Source:HGNC Symbol;Acc:HGNC:28375]
ENSCJAG00000000709	KNOWN_BY_PROJECTION	protein_coding	CSTL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	29172078	29176887	D	cystatin-like 1 [Source:HGNC Symbol;Acc:HGNC:15958]
ENSCJAG00000000712	KNOWN	protein_coding	NAPB	chromosome:C_jacchus3.2.1:5:1:159171411:1	29114354	29159305	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001251}  [Source:UniProtKB/TrEMBL;Acc:F6Z057]
ENSCJAG00000019103	KNOWN	protein_coding	TESPA1	chromosome:C_jacchus3.2.1:9:1:124281992:1	43895283	43937705	R	Protein TESPA1 isoform 1 {ECO:0000313|EMBL:JAB31413.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035472}  [Source:UniProtKB/TrEMBL;Acc:F7IFT8]
ENSCJAG00000018354	KNOWN_BY_PROJECTION	protein_coding	UGT3A2	chromosome:C_jacchus3.2.1:2:1:204313951:1	167526158	167635525	D	UDP glycosyltransferase 3 family, polypeptide A2 [Source:HGNC Symbol;Acc:HGNC:27266]
ENSCJAG00000000733	KNOWN_BY_PROJECTION	protein_coding	GZF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	29098208	29107674	D	GDNF-inducible zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:15808]
ENSCJAG00000000738	KNOWN	protein_coding	NXT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	29086238	29090220	D	NTF2-related export protein 1 {ECO:0000313|EMBL:JAB10414.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001264}  [Source:UniProtKB/TrEMBL;Acc:F6YI48]
ENSCJAG00000002695	KNOWN	protein_coding	ZNF688	chromosome:C_jacchus3.2.1:12:1:121768101:1	28481292	28485358	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004894}; Zinc finger protein 688 isoform a {ECO:0000313|EMBL:JAB11399.1}  [Source:UniProtKB/TrEMBL;Acc:F6WQ51]
ENSCJAG00000019092	KNOWN_BY_PROJECTION	protein_coding	DCD	chromosome:C_jacchus3.2.1:9:1:124281992:1	43666634	43670071	R	dermcidin [Source:HGNC Symbol;Acc:HGNC:14669]
ENSCJAG00000035286	NOVEL	protein_coding	ENSCJAG00000035286	chromosome:C_jacchus3.2.1:5:1:159171411:1	29022376	29039164	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048296}  [Source:UniProtKB/TrEMBL;Acc:F7DPW2]
ENSCJAG00000004205	KNOWN_BY_PROJECTION	protein_coding	NKX6-3	chromosome:C_jacchus3.2.1:13:1:117903854:1	39415864	39421251	R	NK6 homeobox 3 [Source:HGNC Symbol;Acc:HGNC:26328]
ENSCJAG00000005796	KNOWN_BY_PROJECTION	protein_coding	CD93	chromosome:C_jacchus3.2.1:5:1:159171411:1	28825245	28827524	R	CD93 molecule [Source:HGNC Symbol;Acc:HGNC:15855]
ENSCJAG00000019085	KNOWN_BY_PROJECTION	protein_coding	LACRT	chromosome:C_jacchus3.2.1:9:1:124281992:1	43654130	43657890	R	lacritin [Source:HGNC Symbol;Acc:HGNC:16430]
ENSCJAG00000004181	NOVEL	protein_coding	ENSCJAG00000004181	chromosome:C_jacchus3.2.1:13:1:117903854:1	39355755	39392567	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007615}  [Source:UniProtKB/TrEMBL;Acc:F6PQD0]
ENSCJAG00000002691	KNOWN_BY_PROJECTION	protein_coding	ZNF764	chromosome:C_jacchus3.2.1:12:1:121768101:1	28452583	28473124	R	zinc finger protein 764 [Source:HGNC Symbol;Acc:HGNC:28200]
ENSCJAG00000005785	KNOWN_BY_PROJECTION	protein_coding	FOXA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	28309401	28314117	R	forkhead box A2 [Source:HGNC Symbol;Acc:HGNC:5022]
ENSCJAG00000004177	NOVEL	pseudogene	ENSCJAG00000004177	chromosome:C_jacchus3.2.1:13:1:117903854:1	39349337	39349830	D	<no descrition>
ENSCJAG00000002689	KNOWN_BY_PROJECTION	protein_coding	ZNF768	chromosome:C_jacchus3.2.1:12:1:121768101:1	28445239	28446397	R	zinc finger protein 768 [Source:HGNC Symbol;Acc:HGNC:26273]
ENSCJAG00000011025	KNOWN_BY_PROJECTION	protein_coding	TCF7L1	chromosome:C_jacchus3.2.1:13:1:117903854:1	39286604	39288698	R	transcription factor 7-like 1 (T-cell specific, HMG-box) [Source:HGNC Symbol;Acc:HGNC:11640]
ENSCJAG00000019080	NOVEL	protein_coding	ENSCJAG00000019080	chromosome:C_jacchus3.2.1:9:1:124281992:1	43588448	43606891	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035416}  [Source:UniProtKB/TrEMBL;Acc:F7IQ80]
ENSCJAG00000011026	KNOWN	protein_coding	GINS4	chromosome:C_jacchus3.2.1:13:1:117903854:1	39251885	39280766	D	DNA replication complex GINS protein SLD5 {ECO:0000313|EMBL:JAB13109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020357}  [Source:UniProtKB/TrEMBL;Acc:F7GRE4]
ENSCJAG00000011042	NOVEL	protein_coding	ENSCJAG00000011042	chromosome:C_jacchus3.2.1:13:1:117903854:1	39243819	39246911	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020360}  [Source:UniProtKB/TrEMBL;Acc:F7GKQ6]
ENSCJAG00000011044	NOVEL	pseudogene	ENSCJAG00000011044	chromosome:C_jacchus3.2.1:13:1:117903854:1	39219185	39219759	D	<no descrition>
ENSCJAG00000011047	NOVEL	protein_coding	ENSCJAG00000011047	chromosome:C_jacchus3.2.1:13:1:117903854:1	39216716	39217965	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020384}  [Source:UniProtKB/TrEMBL;Acc:F7G9S5]
ENSCJAG00000011057	KNOWN	protein_coding	GOLGA7	chromosome:C_jacchus3.2.1:13:1:117903854:1	39193996	39216459	D	Golgin subfamily A member 7 isoform a {ECO:0000313|EMBL:JAB02470.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020396}  [Source:UniProtKB/TrEMBL;Acc:F7FXN5]
ENSCJAG00000011064	NOVEL	pseudogene	ENSCJAG00000011064	chromosome:C_jacchus3.2.1:13:1:117903854:1	39159409	39160682	D	<no descrition>
ENSCJAG00000034616	NOVEL	protein_coding	ENSCJAG00000034616	chromosome:C_jacchus3.2.1:13:1:117903854:1	39076331	39077874	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050629}  [Source:UniProtKB/TrEMBL;Acc:F7GY83]
ENSCJAG00000002628	KNOWN_BY_PROJECTION	protein_coding	ITGAL	chromosome:C_jacchus3.2.1:12:1:121768101:1	28378872	28435270	D	integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) [Source:HGNC Symbol;Acc:HGNC:6148]
ENSCJAG00000033695	NOVEL	protein_coding	ENSCJAG00000033695	chromosome:C_jacchus3.2.1:13:1:117903854:1	39042105	39043435	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039328}  [Source:UniProtKB/TrEMBL;Acc:F7CVK7]
ENSCJAG00000011066	KNOWN	protein_coding	SFRP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	38966237	39015640	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020441}  [Source:UniProtKB/TrEMBL;Acc:F7EDT7]
ENSCJAG00000015411	KNOWN	protein_coding	CIRH1A	chromosome:C_jacchus3.2.1:20:1:44557958:1	22972683	23014341	D	Cirhin {ECO:0000313|EMBL:JAB13804.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028466}  [Source:UniProtKB/TrEMBL;Acc:F6V3S3]
ENSCJAG00000011086	NOVEL	protein_coding	ENSCJAG00000011086	chromosome:C_jacchus3.2.1:13:1:117903854:1	38926292	38927128	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020452}  [Source:UniProtKB/TrEMBL;Acc:F7E0D1]
ENSCJAG00000011093	NOVEL	pseudogene	ENSCJAG00000011093	chromosome:C_jacchus3.2.1:13:1:117903854:1	38924770	38925962	D	<no descrition>
ENSCJAG00000011099	KNOWN_BY_PROJECTION	protein_coding	GIPC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	38879604	38882261	R	GIPC PDZ domain containing family, member 1 [Source:HGNC Symbol;Acc:HGNC:1226]
ENSCJAG00000009371	NOVEL	protein_coding	ENSCJAG00000009371	chromosome:C_jacchus3.2.1:5:1:159171411:1	27741211	27742444	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045045}  [Source:UniProtKB/TrEMBL;Acc:F6TJH6]
ENSCJAG00000002906	KNOWN_BY_PROJECTION	protein_coding	ABHD16A	chromosome:C_jacchus3.2.1:4:1:171630274:1	32247797	32280256	R	abhydrolase domain containing 16A [Source:HGNC Symbol;Acc:HGNC:13921]
ENSCJAG00000031692	NOVEL	pseudogene	ENSCJAG00000031692	chromosome:C_jacchus3.2.1:13:1:117903854:1	38796498	38797740	R	<no descrition>
ENSCJAG00000015463	NOVEL	protein_coding	ENSCJAG00000015463	chromosome:C_jacchus3.2.1:20:1:44557958:1	22958799	22972657	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028479}  [Source:UniProtKB/TrEMBL;Acc:F6V2Q7]
ENSCJAG00000006523	NOVEL	pseudogene	ENSCJAG00000006523	chromosome:C_jacchus3.2.1:13:1:117903854:1	38635451	38636175	D	<no descrition>
ENSCJAG00000002627	NOVEL	pseudogene	ENSCJAG00000002627	chromosome:C_jacchus3.2.1:12:1:121768101:1	28365371	28366290	R	<no descrition>
ENSCJAG00000005773	KNOWN_BY_PROJECTION	protein_coding	PAX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	27448736	27458163	D	paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
ENSCJAG00000034173	NOVEL	protein_coding	ENSCJAG00000034173	chromosome:C_jacchus3.2.1:12:1:121768101:1	28361479	28362974	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052373}  [Source:UniProtKB/TrEMBL;Acc:F7INN8]
ENSCJAG00000006505	NOVEL	pseudogene	ENSCJAG00000006505	chromosome:C_jacchus3.2.1:13:1:117903854:1	38423081	38424586	R	<no descrition>
ENSCJAG00000005771	NOVEL	pseudogene	ENSCJAG00000005771	chromosome:C_jacchus3.2.1:5:1:159171411:1	27301421	27302072	D	<no descrition>
ENSCJAG00000006492	NOVEL	protein_coding	ENSCJAG00000006492	chromosome:C_jacchus3.2.1:13:1:117903854:1	37983239	37985583	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011989}  [Source:UniProtKB/TrEMBL;Acc:F7F7A0]
ENSCJAG00000015469	KNOWN	protein_coding	HAS3	chromosome:C_jacchus3.2.1:20:1:44557958:1	22946326	22958461	D	Hyaluronan synthase 3 isoform a {ECO:0000313|EMBL:JAB02945.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028496}  [Source:UniProtKB/TrEMBL;Acc:F6UGG5]
ENSCJAG00000006481	KNOWN_BY_PROJECTION	protein_coding	IDO2	chromosome:C_jacchus3.2.1:13:1:117903854:1	37686036	37778758	D	indoleamine 2,3-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:27269]
ENSCJAG00000005762	KNOWN	protein_coding	NKX2-2	chromosome:C_jacchus3.2.1:5:1:159171411:1	27229488	27232460	R	Homeobox protein Nkx-2.2 {ECO:0000313|EMBL:JAB13992.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010590}  [Source:UniProtKB/TrEMBL;Acc:F7I8G9]
ENSCJAG00000012598	KNOWN_BY_PROJECTION	protein_coding	CDC14B	chromosome:C_jacchus3.2.1:1:1:210400635:1	79856425	79928541	R	cell division cycle 14B [Source:HGNC Symbol;Acc:HGNC:1719]
ENSCJAG00000034034	NOVEL	protein_coding	ENSCJAG00000034034	chromosome:C_jacchus3.2.1:20:1:44557958:1	22879986	22880706	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049027}  [Source:UniProtKB/TrEMBL;Acc:F6YIV8]
ENSCJAG00000012589	KNOWN_BY_PROJECTION	protein_coding	HABP4	chromosome:C_jacchus3.2.1:1:1:210400635:1	79802049	79843531	D	hyaluronan binding protein 4 [Source:HGNC Symbol;Acc:HGNC:17062]
ENSCJAG00000006463	KNOWN_BY_PROJECTION	protein_coding	IDO1	chromosome:C_jacchus3.2.1:13:1:117903854:1	37663433	37680398	D	indoleamine 2,3-dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:6059]
ENSCJAG00000015482	KNOWN_BY_PROJECTION	protein_coding	TANGO6	chromosome:C_jacchus3.2.1:20:1:44557958:1	22664033	22924888	D	transport and golgi organization 6 homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:25749]
ENSCJAG00000012587	NOVEL	protein_coding	ENSCJAG00000012587	chromosome:C_jacchus3.2.1:1:1:210400635:1	79758944	79759254	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023035}  [Source:UniProtKB/TrEMBL;Acc:F7IG46]
ENSCJAG00000012580	KNOWN_BY_PROJECTION	protein_coding	ZNF367	chromosome:C_jacchus3.2.1:1:1:210400635:1	79742451	79774001	R	zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]
ENSCJAG00000002989	KNOWN_BY_PROJECTION	protein_coding	LY6G5C	chromosome:C_jacchus3.2.1:4:1:171630274:1	32237949	32242047	R	lymphocyte antigen 6 complex, locus G5C [Source:HGNC Symbol;Acc:HGNC:13932]
ENSCJAG00000008546	KNOWN_BY_PROJECTION	protein_coding	NOX5	chromosome:C_jacchus3.2.1:10:1:132174527:1	11519930	11530676	D	NADPH oxidase, EF-hand calcium binding domain 5 [Source:HGNC Symbol;Acc:HGNC:14874]
ENSCJAG00000012556	KNOWN	protein_coding	SLC35D2	chromosome:C_jacchus3.2.1:1:1:210400635:1	79661003	79737795	R	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter {ECO:0000313|EMBL:JAB08077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050645}  [Source:UniProtKB/TrEMBL;Acc:F7GT05]
ENSCJAG00000006436	KNOWN_BY_PROJECTION	protein_coding	ADAM2	chromosome:C_jacchus3.2.1:13:1:117903854:1	37514768	37624950	R	ADAM metallopeptidase domain 2 [Source:HGNC Symbol;Acc:HGNC:198]
ENSCJAG00000012548	NOVEL	protein_coding	ENSCJAG00000012548	chromosome:C_jacchus3.2.1:1:1:210400635:1	79636053	79645141	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022966}  [Source:UniProtKB/TrEMBL;Acc:F7I892]
ENSCJAG00000012543	NOVEL	pseudogene	ENSCJAG00000012543	chromosome:C_jacchus3.2.1:1:1:210400635:1	79562435	79563254	R	<no descrition>
ENSCJAG00000008899	KNOWN_BY_PROJECTION	protein_coding	HSD17B3	chromosome:C_jacchus3.2.1:1:1:210400635:1	79473674	79542029	R	hydroxysteroid (17-beta) dehydrogenase 3 [Source:HGNC Symbol;Acc:HGNC:5212]
ENSCJAG00000018328	KNOWN	protein_coding	LMBRD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	167452757	167502792	D	LMBR1 domain-containing protein 2 {ECO:0000313|EMBL:JAB03913.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033969}  [Source:UniProtKB/TrEMBL;Acc:F6SRG2]
ENSCJAG00000002804	KNOWN_BY_PROJECTION	protein_coding	KIAA1109	chromosome:C_jacchus3.2.1:3:1:190850796:1	71570052	71774240	R	KIAA1109 [Source:HGNC Symbol;Acc:HGNC:26953]
ENSCJAG00000008560	KNOWN_BY_PROJECTION	protein_coding	SPESP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	11488333	11504579	D	sperm equatorial segment protein 1 [Source:HGNC Symbol;Acc:HGNC:15570]
ENSCJAG00000015504	KNOWN_BY_PROJECTION	protein_coding	CDH1	chromosome:C_jacchus3.2.1:20:1:44557958:1	22558638	22656245	D	cadherin 1, type 1, E-cadherin (epithelial) [Source:HGNC Symbol;Acc:HGNC:1748]
ENSCJAG00000002996	KNOWN_BY_PROJECTION	protein_coding	CSNK2B	chromosome:C_jacchus3.2.1:4:1:171630274:1	32225192	32233446	D	casein kinase 2, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:2460]
ENSCJAG00000003008	NOVEL	pseudogene	ENSCJAG00000003008	chromosome:C_jacchus3.2.1:4:1:171630274:1	32217786	32220211	R	<no descrition>
ENSCJAG00000003002	KNOWN	protein_coding	GPANK1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32221249	32229231	R	G patch domain and ankyrin repeat-containing protein 1 {ECO:0000313|EMBL:JAB03932.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044432}  [Source:UniProtKB/TrEMBL;Acc:F7D181]
ENSCJAG00000002167	KNOWN_BY_PROJECTION	protein_coding	ADAM18	chromosome:C_jacchus3.2.1:13:1:117903854:1	37376248	37496714	D	ADAM metallopeptidase domain 18 [Source:HGNC Symbol;Acc:HGNC:196]
ENSCJAG00000018275	KNOWN	protein_coding	SKP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	167417929	167452602	R	S-phase kinase-associated protein 2 isoform 1 {ECO:0000313|EMBL:JAB08339.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033918}  [Source:UniProtKB/TrEMBL;Acc:F6TZR9]
ENSCJAG00000009235	KNOWN_BY_PROJECTION	protein_coding	PRDM10	chromosome:C_jacchus3.2.1:11:1:130397257:1	28003222	28104310	R	PR domain containing 10 [Source:HGNC Symbol;Acc:HGNC:13995]
ENSCJAG00000015602	NOVEL	pseudogene	ENSCJAG00000015602	chromosome:C_jacchus3.2.1:20:1:44557958:1	22473418	22474315	R	<no descrition>
ENSCJAG00000002623	NOVEL	protein_coding	ENSCJAG00000002623	chromosome:C_jacchus3.2.1:12:1:121768101:1	28338356	28340671	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004751}  [Source:UniProtKB/TrEMBL;Acc:F7BM60]
ENSCJAG00000002206	NOVEL	protein_coding	ENSCJAG00000002206	chromosome:C_jacchus3.2.1:13:1:117903854:1	37298284	37362801	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004006}  [Source:UniProtKB/TrEMBL;Acc:F6YRG0]
ENSCJAG00000003011	KNOWN	protein_coding	APOM	chromosome:C_jacchus3.2.1:4:1:171630274:1	32215411	32217702	D	Apolipoprotein M isoform 1 {ECO:0000313|EMBL:JAB03442.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005464}  [Source:UniProtKB/TrEMBL;Acc:F7HY96]
ENSCJAG00000002621	KNOWN	protein_coding	ENSCJAG00000002621	chromosome:C_jacchus3.2.1:12:1:121768101:1	28305941	28312699	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004745}; dCTP pyrophosphatase 1 {ECO:0000313|EMBL:JAB06155.1}  [Source:UniProtKB/TrEMBL;Acc:F7BMM4]
ENSCJAG00000002796	KNOWN_BY_PROJECTION	protein_coding	ADAD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	71494493	71537338	R	adenosine deaminase domain containing 1 (testis-specific) [Source:HGNC Symbol;Acc:HGNC:30713]
ENSCJAG00000002240	NOVEL	protein_coding	ENSCJAG00000002240	chromosome:C_jacchus3.2.1:13:1:117903854:1	37176464	37277335	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004039}  [Source:UniProtKB/TrEMBL;Acc:F6Y7G4]
ENSCJAG00000002611	KNOWN	protein_coding	ZNF48	chromosome:C_jacchus3.2.1:12:1:121768101:1	28275568	28300352	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004728}; Zinc finger protein 771 {ECO:0000313|EMBL:JAB01980.1}  [Source:UniProtKB/TrEMBL;Acc:F7BN91]
ENSCJAG00000018248	KNOWN_BY_PROJECTION	protein_coding	NADK2	chromosome:C_jacchus3.2.1:2:1:204313951:1	167367298	167414246	D	NAD kinase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:26404]
ENSCJAG00000018235	KNOWN	protein_coding	RANBP3L	chromosome:C_jacchus3.2.1:2:1:204313951:1	167282735	167440646	D	Ran-binding protein 3-like isoform 2 {ECO:0000313|EMBL:JAB19020.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033764}  [Source:UniProtKB/TrEMBL;Acc:F6SSX3]
ENSCJAG00000009229	NOVEL	protein_coding	ENSCJAG00000009229	chromosome:C_jacchus3.2.1:11:1:130397257:1	27996581	27996980	D	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F6UEB7]
ENSCJAG00000019038	KNOWN	protein_coding	PDE1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	43560990	43592320	D	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform 2 {ECO:0000313|EMBL:JAB11246.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035402}  [Source:UniProtKB/TrEMBL;Acc:F7ISI9]
ENSCJAG00000005611	KNOWN	protein_coding	XRN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	27005301	27099694	D	5'-3' exoribonuclease 2 {ECO:0000313|EMBL:JAB03604.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010574}  [Source:UniProtKB/TrEMBL;Acc:F7IAX3]
ENSCJAG00000009163	KNOWN_BY_PROJECTION	protein_coding	NFRKB	chromosome:C_jacchus3.2.1:11:1:130397257:1	27956660	27988532	R	nuclear factor related to kappaB binding protein [Source:HGNC Symbol;Acc:HGNC:7802]
ENSCJAG00000002339	KNOWN	protein_coding	ANP32A	chromosome:C_jacchus3.2.1:10:1:132174527:1	11368396	11408470	R	Acidic leucine-rich nuclear phosphoprotein 32 family member A {ECO:0000313|EMBL:JAB14125.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004254}  [Source:UniProtKB/TrEMBL;Acc:F6Y529]
ENSCJAG00000002251	KNOWN_BY_PROJECTION	protein_coding	ADAM32	chromosome:C_jacchus3.2.1:13:1:117903854:1	36968471	37151418	D	ADAM metallopeptidase domain 32 [Source:HGNC Symbol;Acc:HGNC:15479]
ENSCJAG00000032103	NOVEL	protein_coding	ENSCJAG00000032103	chromosome:C_jacchus3.2.1:10:1:132174527:1	11182966	11183365	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051440}  [Source:UniProtKB/TrEMBL;Acc:F7BJP6]
ENSCJAG00000031137	NOVEL	protein_coding	ENSCJAG00000031137	chromosome:C_jacchus3.2.1:10:1:132174527:1	11168725	11201979	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042796}  [Source:UniProtKB/TrEMBL;Acc:F6UG87]
ENSCJAG00000008862	KNOWN_BY_PROJECTION	protein_coding	ERCC6L2	chromosome:C_jacchus3.2.1:1:1:210400635:1	79074455	79175755	D	excision repair cross-complementation group 6-like 2 [Source:HGNC Symbol;Acc:HGNC:26922]
ENSCJAG00000002319	KNOWN	protein_coding	CORO2B	chromosome:C_jacchus3.2.1:10:1:132174527:1	11145010	11300329	D	Coronin {ECO:0000256|RuleBase:RU280818}  [Source:UniProtKB/TrEMBL;Acc:F6YQ10]
ENSCJAG00000009149	KNOWN	protein_coding	TMEM45B	chromosome:C_jacchus3.2.1:11:1:130397257:1	27901731	27952081	D	Transmembrane protein 45B {ECO:0000313|EMBL:JAB08686.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016779}  [Source:UniProtKB/TrEMBL;Acc:F7A419]
ENSCJAG00000035197	NOVEL	pseudogene	ENSCJAG00000035197	chromosome:C_jacchus3.2.1:11:1:130397257:1	27520059	27520767	R	<no descrition>
ENSCJAG00000002770	KNOWN	protein_coding	IL2	chromosome:C_jacchus3.2.1:3:1:190850796:1	71466298	71471774	D	Interleukin 2 {ECO:0000313|EMBL:ABH03458.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005072}  [Source:UniProtKB/TrEMBL;Acc:Q0PIT4]
ENSCJAG00000009135	KNOWN_BY_PROJECTION	protein_coding	BARX2	chromosome:C_jacchus3.2.1:11:1:130397257:1	27412267	27488991	D	BARX homeobox 2 [Source:HGNC Symbol;Acc:HGNC:956]
ENSCJAG00000018196	KNOWN	protein_coding	SLC1A3	chromosome:C_jacchus3.2.1:2:1:204313951:1	166865567	166946581	R	Excitatory amino acid transporter 1 isoform 1 {ECO:0000313|EMBL:JAB18520.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033740}  [Source:UniProtKB/TrEMBL;Acc:F6TDN5]
ENSCJAG00000002766	NOVEL	pseudogene	ENSCJAG00000002766	chromosome:C_jacchus3.2.1:3:1:190850796:1	71343343	71343650	D	<no descrition>
ENSCJAG00000009093	KNOWN_BY_PROJECTION	protein_coding	ARHGAP32	chromosome:C_jacchus3.2.1:11:1:130397257:1	27019573	27049952	R	Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
ENSCJAG00000002755	KNOWN_BY_PROJECTION	protein_coding	IL21	chromosome:C_jacchus3.2.1:3:1:190850796:1	71306367	71314104	D	interleukin 21 [Source:HGNC Symbol;Acc:HGNC:6005]
ENSCJAG00000002751	KNOWN_BY_PROJECTION	protein_coding	BBS12	chromosome:C_jacchus3.2.1:3:1:190850796:1	71201760	71204382	R	Bardet-Biedl syndrome 12 [Source:HGNC Symbol;Acc:HGNC:26648]
ENSCJAG00000018189	NOVEL	protein_coding	ENSCJAG00000018189	chromosome:C_jacchus3.2.1:2:1:204313951:1	166654030	166655512	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033642}  [Source:UniProtKB/TrEMBL;Acc:F6QYR4]
ENSCJAG00000021318	KNOWN_BY_PROJECTION	protein_coding	PTCH1	chromosome:C_jacchus3.2.1:1:1:210400635:1	78636422	78707620	R	patched 1 [Source:HGNC Symbol;Acc:HGNC:9585]
ENSCJAG00000002577	KNOWN_BY_PROJECTION	protein_coding	SEPT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	28257705	28262295	R	septin 1 [Source:HGNC Symbol;Acc:HGNC:2879]
ENSCJAG00000009067	KNOWN_BY_PROJECTION	protein_coding	C11orf45	chromosome:C_jacchus3.2.1:11:1:130397257:1	26947598	26952573	R	chromosome 11 open reading frame 45 [Source:HGNC Symbol;Acc:HGNC:28584]
ENSCJAG00000035631	KNOWN_BY_PROJECTION	protein_coding	CDH3	chromosome:C_jacchus3.2.1:20:1:44557958:1	22465931	22519873	D	cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:HGNC:1762]
ENSCJAG00000002744	KNOWN_BY_PROJECTION	protein_coding	FGF2	chromosome:C_jacchus3.2.1:3:1:190850796:1	71041914	71057522	R	fibroblast growth factor 2 (basic) [Source:HGNC Symbol;Acc:HGNC:3676]
ENSCJAG00000009078	KNOWN	protein_coding	KCNJ5	chromosome:C_jacchus3.2.1:11:1:130397257:1	26937668	26965355	D	G protein-activated inward rectifier potassium channel 4 {ECO:0000313|EMBL:JAB30407.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044520}  [Source:UniProtKB/TrEMBL;Acc:F7GJU2]
ENSCJAG00000002741	KNOWN	protein_coding	NUDT6	chromosome:C_jacchus3.2.1:3:1:190850796:1	71023606	71041488	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004976}  [Source:UniProtKB/TrEMBL;Acc:F7CGS2]
ENSCJAG00000009057	KNOWN_BY_PROJECTION	protein_coding	KCNJ1	chromosome:C_jacchus3.2.1:11:1:130397257:1	26872876	26873944	R	potassium channel, inwardly rectifying subfamily J, member 1 [Source:HGNC Symbol;Acc:HGNC:6255]
ENSCJAG00000021324	KNOWN_BY_PROJECTION	protein_coding	FANCC	chromosome:C_jacchus3.2.1:1:1:210400635:1	78295967	78505764	R	Fanconi anemia, complementation group C [Source:HGNC Symbol;Acc:HGNC:3584]
ENSCJAG00000002571	KNOWN_BY_PROJECTION	protein_coding	MYLPF	chromosome:C_jacchus3.2.1:12:1:121768101:1	28254181	28257439	D	myosin light chain, phosphorylatable, fast skeletal muscle [Source:HGNC Symbol;Acc:HGNC:29824]
ENSCJAG00000015605	KNOWN	protein_coding	ZFP90	chromosome:C_jacchus3.2.1:20:1:44557958:1	22360893	22387970	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028756}; Zinc finger protein 90 homolog {ECO:0000313|EMBL:JAB05163.1}  [Source:UniProtKB/TrEMBL;Acc:F7A3V5]
ENSCJAG00000015621	NOVEL	protein_coding	ENSCJAG00000015621	chromosome:C_jacchus3.2.1:20:1:44557958:1	22274153	22274934	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028758}  [Source:UniProtKB/TrEMBL;Acc:F7A3U1]
ENSCJAG00000003019	KNOWN	protein_coding	BAG6	chromosome:C_jacchus3.2.1:4:1:171630274:1	32193153	32210856	R	Large proline-rich protein BAG6 isoform d {ECO:0000313|EMBL:JAB15832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005522}  [Source:UniProtKB/TrEMBL;Acc:F7ILT3]
ENSCJAG00000004346	KNOWN_BY_PROJECTION	protein_coding	SPATA5	chromosome:C_jacchus3.2.1:3:1:190850796:1	70691167	71015219	R	spermatogenesis associated 5 [Source:HGNC Symbol;Acc:HGNC:18119]
ENSCJAG00000009034	KNOWN	protein_coding	FLI1	chromosome:C_jacchus3.2.1:11:1:130397257:1	26715467	26841876	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016582}  [Source:UniProtKB/TrEMBL;Acc:F7A4B2]
ENSCJAG00000002262	KNOWN_BY_PROJECTION	protein_coding	ADAM9	chromosome:C_jacchus3.2.1:13:1:117903854:1	36843280	36965466	D	ADAM metallopeptidase domain 9 [Source:HGNC Symbol;Acc:HGNC:216]
ENSCJAG00000035216	NOVEL	protein_coding	ENSCJAG00000035216	chromosome:C_jacchus3.2.1:3:1:190850796:1	69502441	69502992	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045755}  [Source:UniProtKB/TrEMBL;Acc:F6SHA7]
ENSCJAG00000005568	KNOWN	protein_coding	KIZ	chromosome:C_jacchus3.2.1:5:1:159171411:1	26841546	26952584	D	Centrosomal protein kizuna isoform 1 {ECO:0000313|EMBL:JAB02079.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010223}  [Source:UniProtKB/TrEMBL;Acc:F6V9R0]
ENSCJAG00000021327	KNOWN_BY_PROJECTION	protein_coding	C9orf3	chromosome:C_jacchus3.2.1:1:1:210400635:1	77882307	78272923	D	chromosome 9 open reading frame 3 [Source:HGNC Symbol;Acc:HGNC:1361]
ENSCJAG00000003581	KNOWN	protein_coding	ANKRD50	chromosome:C_jacchus3.2.1:3:1:190850796:1	69204792	69246115	D	Ankyrin repeat domain-containing protein 50 isoform 1 {ECO:0000313|EMBL:JAB24212.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006491}  [Source:UniProtKB/TrEMBL;Acc:F7GJ58]
ENSCJAG00000031583	NOVEL	pseudogene	ENSCJAG00000031583	chromosome:C_jacchus3.2.1:3:1:190850796:1	68764001	68764857	D	<no descrition>
ENSCJAG00000003579	NOVEL	protein_coding	ENSCJAG00000003579	chromosome:C_jacchus3.2.1:3:1:190850796:1	68566855	68568493	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006485}  [Source:UniProtKB/TrEMBL;Acc:F7GJI2]
ENSCJAG00000021331	NOVEL	protein_coding	ENSCJAG00000021331	chromosome:C_jacchus3.2.1:1:1:210400635:1	77788406	77796351	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039706}  [Source:UniProtKB/TrEMBL;Acc:F7DTP4]
ENSCJAG00000003565	KNOWN_BY_PROJECTION	protein_coding	FAT4	chromosome:C_jacchus3.2.1:3:1:190850796:1	68355561	68529277	R	FAT atypical cadherin 4 [Source:HGNC Symbol;Acc:HGNC:23109]
ENSCJAG00000009010	KNOWN	protein_coding	ETS1	chromosome:C_jacchus3.2.1:11:1:130397257:1	26477138	26611414	R	Protein C-ets-1 isoform 2 {ECO:0000313|EMBL:JAB08034.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016524}  [Source:UniProtKB/TrEMBL;Acc:F7C4P4]
ENSCJAG00000002325	KNOWN_BY_PROJECTION	protein_coding	TM2D2	chromosome:C_jacchus3.2.1:13:1:117903854:1	36836265	36842823	R	TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
ENSCJAG00000008996	KNOWN_BY_PROJECTION	protein_coding	KIRREL3	chromosome:C_jacchus3.2.1:11:1:130397257:1	24364744	24471164	R	kin of IRRE like 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:23204]
ENSCJAG00000015622	KNOWN	protein_coding	SMPD3	chromosome:C_jacchus3.2.1:20:1:44557958:1	22167349	22269395	R	Sphingomyelin phosphodiesterase 3 {ECO:0000313|EMBL:JAB13749.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028795}  [Source:UniProtKB/TrEMBL;Acc:F6ZLI1]
ENSCJAG00000033070	NOVEL	protein_coding	ENSCJAG00000033070	chromosome:C_jacchus3.2.1:20:1:44557958:1	22123473	22127167	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050103}  [Source:UniProtKB/TrEMBL;Acc:F7H9I7]
ENSCJAG00000002329	KNOWN	protein_coding	HTRA4	chromosome:C_jacchus3.2.1:13:1:117903854:1	36818767	36833810	D	Serine protease HTRA4 {ECO:0000313|EMBL:JAB01760.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004210}  [Source:UniProtKB/TrEMBL;Acc:F6YQ22]
ENSCJAG00000007260	KNOWN	protein_coding	TBC1D10B	chromosome:C_jacchus3.2.1:12:1:121768101:1	28239116	28248993	R	TBC1 domain family member 10B {ECO:0000313|EMBL:JAB09031.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013519}  [Source:UniProtKB/TrEMBL;Acc:F6ZY49]
ENSCJAG00000002269	KNOWN_BY_PROJECTION	protein_coding	ITGA11	chromosome:C_jacchus3.2.1:10:1:132174527:1	10830521	10994732	R	integrin, alpha 11 [Source:HGNC Symbol;Acc:HGNC:6136]
ENSCJAG00000002336	KNOWN_BY_PROJECTION	protein_coding	PLEKHA2	chromosome:C_jacchus3.2.1:13:1:117903854:1	36757497	36814907	D	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 [Source:HGNC Symbol;Acc:HGNC:14336]
ENSCJAG00000021332	KNOWN	protein_coding	FBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	77739293	77773164	R	Fructose-1,6-bisphosphatase 1 {ECO:0000313|EMBL:JAB02292.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039713}  [Source:UniProtKB/TrEMBL;Acc:F7DT76]
ENSCJAG00000015643	KNOWN_BY_PROJECTION	protein_coding	PRMT7	chromosome:C_jacchus3.2.1:20:1:44557958:1	22114154	22163846	D	protein arginine methyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:25557]
ENSCJAG00000002264	KNOWN	protein_coding	FEM1B	chromosome:C_jacchus3.2.1:10:1:132174527:1	10804482	10818569	D	Protein fem-1 homolog B {ECO:0000313|EMBL:JAB07971.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004080}  [Source:UniProtKB/TrEMBL;Acc:F6WBS3]
ENSCJAG00000007235	KNOWN	protein_coding	CD2BP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	28232173	28236513	R	CD2 antigen cytoplasmic tail-binding protein 2 {ECO:0000313|EMBL:JAB06142.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043208}  [Source:UniProtKB/TrEMBL;Acc:F7ICT4]
ENSCJAG00000002250	KNOWN_BY_PROJECTION	protein_coding	CLN6	chromosome:C_jacchus3.2.1:10:1:132174527:1	10724740	10749318	R	ceroid-lipofuscinosis, neuronal 6, late infantile, variant [Source:HGNC Symbol;Acc:HGNC:2077]
ENSCJAG00000015670	KNOWN_BY_PROJECTION	protein_coding	SLC7A6OS	chromosome:C_jacchus3.2.1:20:1:44557958:1	22105421	22114037	R	solute carrier family 7, member 6 opposite strand [Source:HGNC Symbol;Acc:HGNC:25807]
ENSCJAG00000022920	KNOWN_BY_PROJECTION	protein_coding	SPN	chromosome:C_jacchus3.2.1:12:1:121768101:1	28185214	28187487	R	sialophorin [Source:HGNC Symbol;Acc:HGNC:11249]
ENSCJAG00000015675	KNOWN	protein_coding	SLC7A6	chromosome:C_jacchus3.2.1:20:1:44557958:1	22064257	22101595	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028882}  [Source:UniProtKB/TrEMBL;Acc:F6W585]
ENSCJAG00000021334	KNOWN_BY_PROJECTION	protein_coding	FBP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	77683102	77730799	R	fructose-1,6-bisphosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3607]
ENSCJAG00000021339	KNOWN_BY_PROJECTION	protein_coding	SUMO3	chromosome:C_jacchus3.2.1:1:1:210400635:1	77636918	77637226	R	small ubiquitin-like modifier 3 [Source:HGNC Symbol;Acc:HGNC:11124]
ENSCJAG00000002356	KNOWN	protein_coding	TACC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	36559951	36680236	D	Transforming acidic coiled-coil-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB08983.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004317}  [Source:UniProtKB/TrEMBL;Acc:F7CL59]
ENSCJAG00000021340	NOVEL	protein_coding	ENSCJAG00000021340	chromosome:C_jacchus3.2.1:1:1:210400635:1	77614119	77615853	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039723}  [Source:UniProtKB/TrEMBL;Acc:F7DCE9]
ENSCJAG00000021341	KNOWN_BY_PROJECTION	protein_coding	CTSV	chromosome:C_jacchus3.2.1:1:1:210400635:1	77538976	77545122	R	cathepsin V [Source:HGNC Symbol;Acc:HGNC:2538]
ENSCJAG00000035205	NOVEL	protein_coding	ENSCJAG00000035205	chromosome:C_jacchus3.2.1:1:1:210400635:1	77477708	77478535	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050261}  [Source:UniProtKB/TrEMBL;Acc:F7EZ95]
ENSCJAG00000005471	KNOWN	protein_coding	RALGAPA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	26048637	26401358	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045963}  [Source:UniProtKB/TrEMBL;Acc:F6SF80]
ENSCJAG00000018974	KNOWN_BY_PROJECTION	protein_coding	NCKAP1L	chromosome:C_jacchus3.2.1:9:1:124281992:1	43510603	43555132	D	NCK-associated protein 1-like [Source:HGNC Symbol;Acc:HGNC:4862]
ENSCJAG00000015700	KNOWN_BY_PROJECTION	protein_coding	PLA2G15	chromosome:C_jacchus3.2.1:20:1:44557958:1	22045320	22169228	D	phospholipase A2, group XV [Source:HGNC Symbol;Acc:HGNC:17163]
ENSCJAG00000005466	KNOWN_BY_PROJECTION	protein_coding	INSM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	26021718	26022899	D	insulinoma-associated 1 [Source:HGNC Symbol;Acc:HGNC:6090]
ENSCJAG00000008901	KNOWN	protein_coding	ST3GAL4	chromosome:C_jacchus3.2.1:11:1:130397257:1	24296879	24355585	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016452}  [Source:UniProtKB/TrEMBL;Acc:F6WT17]
ENSCJAG00000018052	KNOWN	protein_coding	NIPBL	chromosome:C_jacchus3.2.1:2:1:204313951:1	166465398	166666059	R	Nipped-B-like protein isoform B {ECO:0000313|EMBL:JAB08136.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047084}  [Source:UniProtKB/TrEMBL;Acc:F7I6L1]
ENSCJAG00000032516	KNOWN_BY_PROJECTION	protein_coding	GTSF1L	chromosome:C_jacchus3.2.1:9:1:124281992:1	43502278	43502817	R	gametocyte specific factor 1-like [Source:HGNC Symbol;Acc:HGNC:16198]
ENSCJAG00000005444	KNOWN_BY_PROJECTION	protein_coding	CFAP61	chromosome:C_jacchus3.2.1:5:1:159171411:1	25660522	25936874	D	cilia and flagella associated protein 61 [Source:HGNC Symbol;Acc:HGNC:15872]
ENSCJAG00000031617	NOVEL	protein_coding	ENSCJAG00000031617	chromosome:C_jacchus3.2.1:1:1:210400635:1	77469040	77495483	R	<no descrition>
ENSCJAG00000015709	NOVEL	protein_coding	ENSCJAG00000015709	chromosome:C_jacchus3.2.1:20:1:44557958:1	22024168	22032227	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028932}  [Source:UniProtKB/TrEMBL;Acc:F7C2P3]
ENSCJAG00000003524	KNOWN_BY_PROJECTION	protein_coding	INTU	chromosome:C_jacchus3.2.1:3:1:190850796:1	65994633	66076282	R	inturned planar cell polarity protein [Source:HGNC Symbol;Acc:HGNC:29239]
ENSCJAG00000007021	NOVEL	pseudogene	ENSCJAG00000007021	chromosome:C_jacchus3.2.1:1:1:210400635:1	77464900	77465351	R	<no descrition>
ENSCJAG00000008896	KNOWN	protein_coding	DCPS	chromosome:C_jacchus3.2.1:11:1:130397257:1	24234754	24284936	D	M7GpppX diphosphatase {ECO:0000313|EMBL:JAB02184.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016281}  [Source:UniProtKB/TrEMBL;Acc:F6VQ17]
ENSCJAG00000008894	NOVEL	pseudogene	ENSCJAG00000008894	chromosome:C_jacchus3.2.1:11:1:130397257:1	24229098	24229478	R	<no descrition>
ENSCJAG00000015793	NOVEL	pseudogene	ENSCJAG00000015793	chromosome:C_jacchus3.2.1:20:1:44557958:1	22007515	22007845	D	<no descrition>
ENSCJAG00000008886	KNOWN	protein_coding	TIRAP	chromosome:C_jacchus3.2.1:11:1:130397257:1	24213068	24224346	D	Toll/interleukin-1 receptor domain-containing adapter protein isoform a {ECO:0000313|EMBL:JAB09448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016268}  [Source:UniProtKB/TrEMBL;Acc:F6WAD5]
ENSCJAG00000017452	KNOWN	protein_coding	SPIN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	77340064	77390974	D	Spindlin-1 {ECO:0000313|EMBL:JAB05767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032147}  [Source:UniProtKB/TrEMBL;Acc:F7GKT5]
ENSCJAG00000007227	NOVEL	protein_coding	ENSCJAG00000007227	chromosome:C_jacchus3.2.1:12:1:121768101:1	28151130	28171470	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010354}  [Source:UniProtKB/TrEMBL;Acc:F6ZS65]
ENSCJAG00000018968	KNOWN_BY_PROJECTION	protein_coding	GTSF1	chromosome:C_jacchus3.2.1:9:1:124281992:1	43468997	43476297	R	gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
ENSCJAG00000007226	KNOWN_BY_PROJECTION	protein_coding	C16orf54	chromosome:C_jacchus3.2.1:12:1:121768101:1	28120542	28124081	D	chromosome 16 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:26649]
ENSCJAG00000007224	NOVEL	protein_coding	ENSCJAG00000007224	chromosome:C_jacchus3.2.1:12:1:121768101:1	28101095	28101871	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013423}  [Source:UniProtKB/TrEMBL;Acc:F6X691]
ENSCJAG00000003047	KNOWN_BY_PROJECTION	protein_coding	PRRC2A	chromosome:C_jacchus3.2.1:4:1:171630274:1	32175205	32192214	D	proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
ENSCJAG00000005393	KNOWN_BY_PROJECTION	protein_coding	CRNKL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	25642990	25664108	R	crooked neck pre-mRNA splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:15762]
ENSCJAG00000017448	NOVEL	protein_coding	ENSCJAG00000017448	chromosome:C_jacchus3.2.1:1:1:210400635:1	77195136	77196563	D	<no descrition>
ENSCJAG00000007220	KNOWN_BY_PROJECTION	protein_coding	ZG16	chromosome:C_jacchus3.2.1:12:1:121768101:1	28079993	28082924	R	zymogen granule protein 16 [Source:HGNC Symbol;Acc:HGNC:30961]
ENSCJAG00000017447	NOVEL	pseudogene	ENSCJAG00000017447	chromosome:C_jacchus3.2.1:1:1:210400635:1	76904091	76904437	R	<no descrition>
ENSCJAG00000002394	KNOWN	protein_coding	FGFR1	chromosome:C_jacchus3.2.1:13:1:117903854:1	36234953	36297099	R	Fibroblast growth factor receptor {ECO:0000256|PIRNR:PIRNR000628}  [Source:UniProtKB/TrEMBL;Acc:F7IEC9]
ENSCJAG00000003510	KNOWN_BY_PROJECTION	protein_coding	SLC25A31	chromosome:C_jacchus3.2.1:3:1:190850796:1	65924034	65980061	R	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 [Source:HGNC Symbol;Acc:HGNC:25319]
ENSCJAG00000017433	NOVEL	protein_coding	ENSCJAG00000017433	chromosome:C_jacchus3.2.1:1:1:210400635:1	76883975	76893282	R	<no descrition>
ENSCJAG00000002243	KNOWN_BY_PROJECTION	protein_coding	CALML4	chromosome:C_jacchus3.2.1:10:1:132174527:1	10708025	10719300	R	calmodulin-like 4 [Source:HGNC Symbol;Acc:HGNC:18445]
ENSCJAG00000002224	KNOWN_BY_PROJECTION	protein_coding	PIAS1	chromosome:C_jacchus3.2.1:10:1:132174527:1	10596800	10701785	D	protein inhibitor of activated STAT, 1 [Source:HGNC Symbol;Acc:HGNC:2752]
ENSCJAG00000005377	KNOWN	protein_coding	NAA20	chromosome:C_jacchus3.2.1:5:1:159171411:1	25624363	25641075	D	N-alpha-acetyltransferase 20 isoform a {ECO:0000313|EMBL:JAB03432.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009851}  [Source:UniProtKB/TrEMBL;Acc:F7F6T9]
ENSCJAG00000005373	NOVEL	protein_coding	ENSCJAG00000005373	chromosome:C_jacchus3.2.1:5:1:159171411:1	25620775	25622666	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009818}  [Source:UniProtKB/TrEMBL;Acc:F7FJU6]
ENSCJAG00000003450	KNOWN	protein_coding	HSPA4L	chromosome:C_jacchus3.2.1:3:1:190850796:1	65860493	65919279	R	Heat shock 70 kDa protein 4L {ECO:0000313|EMBL:JAB08343.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006369}  [Source:UniProtKB/TrEMBL;Acc:F7DZE4]
ENSCJAG00000003075	KNOWN	protein_coding	AIF1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32170503	32172317	D	Allograft inflammatory factor 1 isoform 3 {ECO:0000313|EMBL:JAB15495.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005606}  [Source:UniProtKB/TrEMBL;Acc:F7I2X5]
ENSCJAG00000003096	KNOWN_BY_PROJECTION	protein_coding	NCR3	chromosome:C_jacchus3.2.1:4:1:171630274:1	32124899	32129397	R	natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:HGNC:19077]
ENSCJAG00000008850	KNOWN	protein_coding	FOXRED1	chromosome:C_jacchus3.2.1:11:1:130397257:1	24198817	24208736	D	FAD-dependent oxidoreductase domain-containing protein 1 {ECO:0000313|EMBL:JAB17652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016252}  [Source:UniProtKB/TrEMBL;Acc:F6WV06]
ENSCJAG00000003100	NOVEL	protein_coding	ENSCJAG00000003100	chromosome:C_jacchus3.2.1:4:1:171630274:1	32115980	32117303	D	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7I2X0]
ENSCJAG00000034315	NOVEL	protein_coding	ENSCJAG00000034315	chromosome:C_jacchus3.2.1:4:1:171630274:1	32121463	32121781	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042043}  [Source:UniProtKB/TrEMBL;Acc:F6RSV9]
ENSCJAG00000002196	KNOWN_BY_PROJECTION	protein_coding	SKOR1	chromosome:C_jacchus3.2.1:10:1:132174527:1	10333272	10348572	D	SKI family transcriptional corepressor 1 [Source:HGNC Symbol;Acc:HGNC:21326]
ENSCJAG00000003446	NOVEL	pseudogene	ENSCJAG00000003446	chromosome:C_jacchus3.2.1:3:1:190850796:1	65774781	65775401	D	<no descrition>
ENSCJAG00000015726	KNOWN	protein_coding	NFATC3	chromosome:C_jacchus3.2.1:20:1:44557958:1	21858926	22022223	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044152}  [Source:UniProtKB/TrEMBL;Acc:F7FYM9]
ENSCJAG00000017408	KNOWN_BY_PROJECTION	protein_coding	PTPDC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	76634652	76701577	D	protein tyrosine phosphatase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30184]
ENSCJAG00000007193	NOVEL	protein_coding	ENSCJAG00000007193	chromosome:C_jacchus3.2.1:12:1:121768101:1	28054052	28069663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050266}  [Source:UniProtKB/TrEMBL;Acc:F7EZ74]
ENSCJAG00000017399	KNOWN_BY_PROJECTION	protein_coding	BARX1	chromosome:C_jacchus3.2.1:1:1:210400635:1	76575792	76579344	R	BARX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:955]
ENSCJAG00000018003	KNOWN_BY_PROJECTION	protein_coding	C5orf42	chromosome:C_jacchus3.2.1:2:1:204313951:1	166250360	166425554	D	chromosome 5 open reading frame 42 [Source:HGNC Symbol;Acc:HGNC:25801]
ENSCJAG00000008752	KNOWN	protein_coding	SRPR	chromosome:C_jacchus3.2.1:11:1:130397257:1	24192639	24198664	R	Signal recognition particle receptor subunit alpha isoform 2 {ECO:0000313|EMBL:JAB31537.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016185}  [Source:UniProtKB/TrEMBL;Acc:F6ZQF6]
ENSCJAG00000007189	NOVEL	protein_coding	ENSCJAG00000007189	chromosome:C_jacchus3.2.1:12:1:121768101:1	28047986	28052232	R	<no descrition>
ENSCJAG00000007186	NOVEL	protein_coding	ENSCJAG00000007186	chromosome:C_jacchus3.2.1:12:1:121768101:1	28041579	28044842	R	<no descrition>
ENSCJAG00000007182	KNOWN	protein_coding	ENSCJAG00000007182	chromosome:C_jacchus3.2.1:12:1:121768101:1	28037876	28041274	R	PAXIP1-associated protein 1 {ECO:0000313|EMBL:JAB21130.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013348}  [Source:UniProtKB/TrEMBL;Acc:F7BJ32]
ENSCJAG00000002156	KNOWN	protein_coding	MAP2K5	chromosome:C_jacchus3.2.1:10:1:132174527:1	10016880	10303899	D	Dual specificity mitogen-activated protein kinase kinase 5 isoform B {ECO:0000313|EMBL:JAB40159.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003894}  [Source:UniProtKB/TrEMBL;Acc:F7GFU7]
ENSCJAG00000008701	KNOWN_BY_PROJECTION	protein_coding	FAM118B	chromosome:C_jacchus3.2.1:11:1:130397257:1	24142888	24307103	D	family with sequence similarity 118, member B [Source:HGNC Symbol;Acc:HGNC:26110]
ENSCJAG00000003403	KNOWN	protein_coding	PLK4	chromosome:C_jacchus3.2.1:3:1:190850796:1	65752244	65770142	R	Serine/threonine-protein kinase PLK {ECO:0000256|RuleBase:RU361162}  [Source:UniProtKB/TrEMBL;Acc:F7GW73]
ENSCJAG00000005342	KNOWN_BY_PROJECTION	protein_coding	RIN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	25486797	25611667	D	Ras and Rab interactor 2 [Source:HGNC Symbol;Acc:HGNC:18750]
ENSCJAG00000003102	KNOWN_BY_PROJECTION	protein_coding	LTB	chromosome:C_jacchus3.2.1:4:1:171630274:1	32112500	32114369	R	lymphotoxin beta (TNF superfamily, member 3) [Source:HGNC Symbol;Acc:HGNC:6711]
ENSCJAG00000002468	KNOWN_BY_PROJECTION	protein_coding	LETM2	chromosome:C_jacchus3.2.1:13:1:117903854:1	36202608	36230045	D	leucine zipper-EF-hand containing transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:14648]
ENSCJAG00000005325	KNOWN	protein_coding	SLC24A3	chromosome:C_jacchus3.2.1:5:1:159171411:1	25111298	25322429	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009750}  [Source:UniProtKB/TrEMBL;Acc:F7GWW4]
ENSCJAG00000002154	KNOWN	protein_coding	C15ORF61	chromosome:C_jacchus3.2.1:10:1:132174527:1	9997009	10003390	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003866}; Uncharacterized protein C15orf61 {ECO:0000313|EMBL:JAB09076.1}  [Source:UniProtKB/TrEMBL;Acc:F7GTT8]
ENSCJAG00000002153	NOVEL	pseudogene	ENSCJAG00000002153	chromosome:C_jacchus3.2.1:10:1:132174527:1	9843648	9844773	D	<no descrition>
ENSCJAG00000017343	KNOWN_BY_PROJECTION	protein_coding	PHF2	chromosome:C_jacchus3.2.1:1:1:210400635:1	76249215	76297149	D	PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
ENSCJAG00000003109	KNOWN	protein_coding	TNF	chromosome:C_jacchus3.2.1:4:1:171630274:1	32107292	32110021	D	Callithrix jacchus tumor necrosis factor (TNF), mRNA. [Source:RefSeq mRNA;Acc:NM_001257261]
ENSCJAG00000003124	KNOWN_BY_PROJECTION	protein_coding	LTA	chromosome:C_jacchus3.2.1:4:1:171630274:1	32103821	32106025	D	lymphotoxin alpha [Source:HGNC Symbol;Acc:HGNC:6709]
ENSCJAG00000005306	KNOWN	protein_coding	DTD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	24175574	24345007	D	D-tyrosyl-tRNA(Tyr) deacylase {ECO:0000256|RuleBase:RU003470}  [Source:UniProtKB/TrEMBL;Acc:F7H1X1]
ENSCJAG00000008698	KNOWN_BY_PROJECTION	protein_coding	RPUSD4	chromosome:C_jacchus3.2.1:11:1:130397257:1	24133295	24142802	R	RNA pseudouridylate synthase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25898]
ENSCJAG00000002489	KNOWN	protein_coding	WHSC1L1	chromosome:C_jacchus3.2.1:13:1:117903854:1	36081696	36198692	R	Histone-lysine N-methyltransferase NSD3 isoform short {ECO:0000313|EMBL:JAB09343.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004637}  [Source:UniProtKB/TrEMBL;Acc:F6YLQ0]
ENSCJAG00000015797	KNOWN	protein_coding	DUS2	chromosome:C_jacchus3.2.1:20:1:44557958:1	21796036	21853673	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029173}; tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 1 {ECO:0000313|EMBL:JAB12238.1}  [Source:UniProtKB/TrEMBL;Acc:F7I5L3]
ENSCJAG00000008669	KNOWN_BY_PROJECTION	protein_coding	CDON	chromosome:C_jacchus3.2.1:11:1:130397257:1	23880869	23982515	R	cell adhesion associated, oncogene regulated [Source:HGNC Symbol;Acc:HGNC:17104]
ENSCJAG00000002560	KNOWN_BY_PROJECTION	protein_coding	PPAPDC1B	chromosome:C_jacchus3.2.1:13:1:117903854:1	36069575	36075931	R	phosphatidic acid phosphatase type 2 domain containing 1B [Source:HGNC Symbol;Acc:HGNC:25026]
ENSCJAG00000018921	KNOWN	protein_coding	ITGA5	chromosome:C_jacchus3.2.1:9:1:124281992:1	43399841	43429366	R	Integrin alpha-5 {ECO:0000313|EMBL:JAB35881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035228}  [Source:UniProtKB/TrEMBL;Acc:F7IMY7]
ENSCJAG00000017976	KNOWN	protein_coding	NUP155	chromosome:C_jacchus3.2.1:2:1:204313951:1	166123267	166209510	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046354}  [Source:UniProtKB/TrEMBL;Acc:F6WZ07]
ENSCJAG00000015850	KNOWN_BY_PROJECTION	protein_coding	DPEP2	chromosome:C_jacchus3.2.1:20:1:44557958:1	21756773	21769685	R	dipeptidase 2 [Source:HGNC Symbol;Acc:HGNC:23028]
ENSCJAG00000002575	KNOWN	protein_coding	DDHD2	chromosome:C_jacchus3.2.1:13:1:117903854:1	36034883	36065580	D	Phospholipase DDHD2 isoform 1 {ECO:0000313|EMBL:JAB06473.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004739}  [Source:UniProtKB/TrEMBL;Acc:F7BMX2]
ENSCJAG00000015864	KNOWN_BY_PROJECTION	protein_coding	DPEP3	chromosome:C_jacchus3.2.1:20:1:44557958:1	21746056	21751150	R	dipeptidase 3 [Source:HGNC Symbol;Acc:HGNC:23029]
ENSCJAG00000011461	KNOWN_BY_PROJECTION	protein_coding	FAM120A	chromosome:C_jacchus3.2.1:1:1:210400635:1	76078621	76182526	D	family with sequence similarity 120A [Source:HGNC Symbol;Acc:HGNC:13247]
ENSCJAG00000002619	KNOWN	protein_coding	BAG4	chromosome:C_jacchus3.2.1:13:1:117903854:1	35980044	36014625	D	BAG family molecular chaperone regulator 4 isoform 1 {ECO:0000313|EMBL:JAB05433.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004763}  [Source:UniProtKB/TrEMBL;Acc:F7B4H1]
ENSCJAG00000007795	NOVEL	pseudogene	ENSCJAG00000007795	chromosome:C_jacchus3.2.1:2:1:204313951:1	165994961	165995756	D	<no descrition>
ENSCJAG00000002631	KNOWN	protein_coding	LSM1	chromosome:C_jacchus3.2.1:13:1:117903854:1	35963770	35979960	R	U6 snRNA-associated Sm-like protein LSm1 {ECO:0000313|EMBL:JAB11058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004767}  [Source:UniProtKB/TrEMBL;Acc:F7B4D2]
ENSCJAG00000002634	KNOWN_BY_PROJECTION	protein_coding	STAR	chromosome:C_jacchus3.2.1:13:1:117903854:1	35942715	35951120	R	steroidogenic acute regulatory protein [Source:HGNC Symbol;Acc:HGNC:11359]
ENSCJAG00000008600	KNOWN	protein_coding	DDX25	chromosome:C_jacchus3.2.1:11:1:130397257:1	23823172	23841042	D	ATP-dependent RNA helicase DDX25 {ECO:0000313|EMBL:JAB13536.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015939}  [Source:UniProtKB/TrEMBL;Acc:F7E798]
ENSCJAG00000007166	KNOWN_BY_PROJECTION	protein_coding	MVP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28009853	28037481	R	major vault protein [Source:HGNC Symbol;Acc:HGNC:7531]
ENSCJAG00000003129	KNOWN	protein_coding	NFKBIL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32076002	32090901	D	NF-kappa-B inhibitor-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB04652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005728}  [Source:UniProtKB/TrEMBL;Acc:F7IEJ1]
ENSCJAG00000008581	KNOWN	protein_coding	PUS3	chromosome:C_jacchus3.2.1:11:1:130397257:1	23812243	23821625	R	tRNA pseudouridine synthase {ECO:0000256|RuleBase:RU003792}  [Source:UniProtKB/TrEMBL;Acc:F7GU24]
ENSCJAG00000008579	KNOWN_BY_PROJECTION	protein_coding	HYLS1	chromosome:C_jacchus3.2.1:11:1:130397257:1	23801164	23819428	D	hydrolethalus syndrome 1 [Source:HGNC Symbol;Acc:HGNC:26558]
ENSCJAG00000008577	KNOWN_BY_PROJECTION	protein_coding	PATE4	chromosome:C_jacchus3.2.1:11:1:130397257:1	23776149	23780602	D	prostate and testis expressed 4 [Source:HGNC Symbol;Acc:HGNC:35427]
ENSCJAG00000034119	NOVEL	protein_coding	ENSCJAG00000034119	chromosome:C_jacchus3.2.1:11:1:130397257:1	23741321	23742426	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043943}  [Source:UniProtKB/TrEMBL;Acc:F7HKZ1]
ENSCJAG00000007784	KNOWN_BY_PROJECTION	protein_coding	WDR70	chromosome:C_jacchus3.2.1:2:1:204313951:1	165738920	166115522	R	WD repeat domain 70 [Source:HGNC Symbol;Acc:HGNC:25495]
ENSCJAG00000008575	KNOWN_BY_PROJECTION	protein_coding	PATE3	chromosome:C_jacchus3.2.1:11:1:130397257:1	23720443	23723811	D	prostate and testis expressed 3 [Source:HGNC Symbol;Acc:HGNC:35426]
ENSCJAG00000002642	KNOWN	protein_coding	ASH2L	chromosome:C_jacchus3.2.1:13:1:117903854:1	35903244	35938620	D	Set1/Ash2 histone methyltransferase complex subunit ASH2 isoform a {ECO:0000313|EMBL:JAB20898.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004844}  [Source:UniProtKB/TrEMBL;Acc:F6Y0Z3]
ENSCJAG00000011431	KNOWN_BY_PROJECTION	protein_coding	WNK2	chromosome:C_jacchus3.2.1:1:1:210400635:1	75795229	75930394	D	WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
ENSCJAG00000007761	KNOWN_BY_PROJECTION	protein_coding	GDNF	chromosome:C_jacchus3.2.1:2:1:204313951:1	165662915	165688327	D	glial cell derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:4232]
ENSCJAG00000002671	KNOWN	protein_coding	EIF4EBP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	35854061	35888306	D	Eukaryotic translation initiation factor 4E-binding protein 1 {ECO:0000313|EMBL:JAB11313.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004853}  [Source:UniProtKB/TrEMBL;Acc:F6Y074]
ENSCJAG00000018897	KNOWN	protein_coding	ZNF385A	chromosome:C_jacchus3.2.1:9:1:124281992:1	43372844	43395084	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035123}; Zinc finger protein 385A isoform a {ECO:0000313|EMBL:JAB29994.1}  [Source:UniProtKB/TrEMBL;Acc:F7HZI7]
ENSCJAG00000002674	KNOWN	protein_coding	ADRB3	chromosome:C_jacchus3.2.1:13:1:117903854:1	35811277	35814477	R	Beta-3 adrenergic receptor {ECO:0000313|EMBL:JAB05619.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004869}  [Source:UniProtKB/TrEMBL;Acc:F6XCG0]
ENSCJAG00000005179	KNOWN	protein_coding	SEC23B	chromosome:C_jacchus3.2.1:5:1:159171411:1	24114590	24155970	D	Protein transport protein Sec23B isoform 1 {ECO:0000313|EMBL:JAB06660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046867}  [Source:UniProtKB/TrEMBL;Acc:F7IMB2]
ENSCJAG00000018892	KNOWN	protein_coding	SYNDIG1	chromosome:C_jacchus3.2.1:9:1:124281992:1	43298404	43341727	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035080}  [Source:UniProtKB/TrEMBL;Acc:F7I8X0]
ENSCJAG00000018894	KNOWN	protein_coding	GPR84	chromosome:C_jacchus3.2.1:9:1:124281992:1	43364734	43367050	R	G-protein coupled receptor 84 {ECO:0000313|EMBL:JAB17722.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035083}  [Source:UniProtKB/TrEMBL;Acc:F7I8W7]
ENSCJAG00000008556	KNOWN_BY_PROJECTION	protein_coding	PATE1	chromosome:C_jacchus3.2.1:11:1:130397257:1	23688946	23691482	D	prostate and testis expressed 1 [Source:HGNC Symbol;Acc:HGNC:24664]
ENSCJAG00000034413	NOVEL	protein_coding	ENSCJAG00000034413	chromosome:C_jacchus3.2.1:1:1:210400635:1	75721625	75734390	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012484}  [Source:UniProtKB/TrEMBL;Acc:F7E4X8]
ENSCJAG00000002687	KNOWN_BY_PROJECTION	protein_coding	GOT1L1	chromosome:C_jacchus3.2.1:13:1:117903854:1	35790818	35796726	R	glutamic-oxaloacetic transaminase 1-like 1 [Source:HGNC Symbol;Acc:HGNC:28487]
ENSCJAG00000002706	KNOWN_BY_PROJECTION	protein_coding	RAB11FIP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	35724289	35768361	R	RAB11 family interacting protein 1 (class I) [Source:HGNC Symbol;Acc:HGNC:30265]
ENSCJAG00000003382	KNOWN	protein_coding	MFSD8	chromosome:C_jacchus3.2.1:3:1:190850796:1	65695356	65738469	D	Major facilitator superfamily domain-containing protein 8 {ECO:0000313|EMBL:JAB06018.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006171}  [Source:UniProtKB/TrEMBL;Acc:F7DJT7]
ENSCJAG00000034317	NOVEL	protein_coding	ENSCJAG00000034317	chromosome:C_jacchus3.2.1:1:1:210400635:1	75720176	75720637	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048137}  [Source:UniProtKB/TrEMBL;Acc:F7HDZ5]
ENSCJAG00000035898	NOVEL	protein_coding	ENSCJAG00000035898	chromosome:C_jacchus3.2.1:1:1:210400635:1	75708077	75711396	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015843}  [Source:UniProtKB/TrEMBL;Acc:F7GNV6]
ENSCJAG00000002130	KNOWN_BY_PROJECTION	protein_coding	IQCH	chromosome:C_jacchus3.2.1:10:1:132174527:1	9682070	9969861	D	IQ motif containing H [Source:HGNC Symbol;Acc:HGNC:25721]
ENSCJAG00000008609	KNOWN_BY_PROJECTION	protein_coding	SUSD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	75659223	75686218	D	sushi domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28391]
ENSCJAG00000013234	NOVEL	pseudogene	ENSCJAG00000013234	chromosome:C_jacchus3.2.1:1:1:210400635:1	75632367	75634019	D	<no descrition>
ENSCJAG00000008513	KNOWN_BY_PROJECTION	protein_coding	ACRV1	chromosome:C_jacchus3.2.1:11:1:130397257:1	23538911	23555755	R	acrosomal vesicle protein 1 [Source:HGNC Symbol;Acc:HGNC:127]
ENSCJAG00000018887	KNOWN	protein_coding	COPZ1	chromosome:C_jacchus3.2.1:9:1:124281992:1	43271302	43352307	D	Coatomer subunit zeta-1 isoform 1 {ECO:0000313|EMBL:JAB07104.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035077}  [Source:UniProtKB/TrEMBL;Acc:F7I8Y2]
ENSCJAG00000002724	KNOWN	protein_coding	BRF2	chromosome:C_jacchus3.2.1:13:1:117903854:1	35703814	35709924	R	Transcription factor IIIB 50 kDa subunit {ECO:0000313|EMBL:JAB31953.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004953}  [Source:UniProtKB/TrEMBL;Acc:F6UD12]
ENSCJAG00000005170	KNOWN	protein_coding	RBBP9	chromosome:C_jacchus3.2.1:5:1:159171411:1	24101829	24107213	R	Putative hydrolase RBBP9 {ECO:0000313|EMBL:JAB05562.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009439}  [Source:UniProtKB/TrEMBL;Acc:F7GC35]
ENSCJAG00000003149	KNOWN	protein_coding	ATP6V1G2	chromosome:C_jacchus3.2.1:4:1:171630274:1	32073624	32077521	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005734}; V-type proton ATPase subunit G 2 isoform a {ECO:0000313|EMBL:JAB05577.1}  [Source:UniProtKB/TrEMBL;Acc:F7IEI0]
ENSCJAG00000007155	KNOWN_BY_PROJECTION	protein_coding	CDIPT	chromosome:C_jacchus3.2.1:12:1:121768101:1	27997759	28003749	D	CDP-diacylglycerol--inositol 3-phosphatidyltransferase [Source:HGNC Symbol;Acc:HGNC:1769]
ENSCJAG00000005159	KNOWN	protein_coding	POLR3F	chromosome:C_jacchus3.2.1:5:1:159171411:1	24077980	24097192	D	DNA-directed RNA polymerase III subunit RPC6 {ECO:0000313|EMBL:JAB07353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009426}  [Source:UniProtKB/TrEMBL;Acc:F7GCJ1]
ENSCJAG00000002733	KNOWN	protein_coding	GPR124	chromosome:C_jacchus3.2.1:13:1:117903854:1	35652878	35703901	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004994}  [Source:UniProtKB/TrEMBL;Acc:F7C1X5]
ENSCJAG00000033727	NOVEL	protein_coding	ENSCJAG00000033727	chromosome:C_jacchus3.2.1:12:1:121768101:1	27993828	27997671	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043598}  [Source:UniProtKB/TrEMBL;Acc:F7ILX8]
ENSCJAG00000013220	NOVEL	protein_coding	ENSCJAG00000013220	chromosome:C_jacchus3.2.1:1:1:210400635:1	75627922	75713725	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024283}  [Source:UniProtKB/TrEMBL;Acc:F7EIQ9]
ENSCJAG00000018880	KNOWN_BY_PROJECTION	protein_coding	NFE2	chromosome:C_jacchus3.2.1:9:1:124281992:1	43232337	43241908	R	nuclear factor, erythroid 2 [Source:HGNC Symbol;Acc:HGNC:7780]
ENSCJAG00000002113	KNOWN_BY_PROJECTION	protein_coding	AAGAB	chromosome:C_jacchus3.2.1:10:1:132174527:1	9617771	9682612	R	alpha- and gamma-adaptin binding protein [Source:HGNC Symbol;Acc:HGNC:25662]
ENSCJAG00000013242	NOVEL	protein_coding	ENSCJAG00000013242	chromosome:C_jacchus3.2.1:1:1:210400635:1	75521811	75542134	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024329}  [Source:UniProtKB/TrEMBL;Acc:F7HDT5]
ENSCJAG00000002088	KNOWN	protein_coding	SMAD3	chromosome:C_jacchus3.2.1:10:1:132174527:1	9469422	9607271	D	Mothers against decapentaplegic homolog 3 isoform 1 {ECO:0000313|EMBL:JAB09609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046774}  [Source:UniProtKB/TrEMBL;Acc:F7I1B6]
ENSCJAG00000018864	NOVEL	protein_coding	ENSCJAG00000018864	chromosome:C_jacchus3.2.1:9:1:124281992:1	43220126	43223028	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035038}  [Source:UniProtKB/TrEMBL;Acc:F7IDN2]
ENSCJAG00000013265	NOVEL	protein_coding	ENSCJAG00000013265	chromosome:C_jacchus3.2.1:1:1:210400635:1	75444341	75445245	D	<no descrition>
ENSCJAG00000002756	KNOWN	protein_coding	PROSC	chromosome:C_jacchus3.2.1:13:1:117903854:1	35612164	35627273	D	Proline synthase co-transcribed bacterial homolog protein {ECO:0000313|EMBL:JAB04023.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005018}  [Source:UniProtKB/TrEMBL;Acc:F7I3A2]
ENSCJAG00000031959	NOVEL	pseudogene	ENSCJAG00000031959	chromosome:C_jacchus3.2.1:1:1:210400635:1	75425595	75426683	R	<no descrition>
ENSCJAG00000013248	KNOWN	protein_coding	HIATL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	75373937	75470327	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024351}  [Source:UniProtKB/TrEMBL;Acc:F7H375]
ENSCJAG00000002083	NOVEL	pseudogene	ENSCJAG00000002083	chromosome:C_jacchus3.2.1:10:1:132174527:1	9395697	9395967	R	<no descrition>
ENSCJAG00000007573	KNOWN_BY_PROJECTION	protein_coding	SMAD6	chromosome:C_jacchus3.2.1:10:1:132174527:1	9158345	9243250	D	SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]
ENSCJAG00000013273	KNOWN_BY_PROJECTION	protein_coding	ZNF679	chromosome:C_jacchus3.2.1:1:1:210400635:1	75305977	75320993	D	zinc finger protein 679 [Source:HGNC Symbol;Acc:HGNC:28650]
ENSCJAG00000003356	KNOWN_BY_PROJECTION	protein_coding	C4orf29	chromosome:C_jacchus3.2.1:3:1:190850796:1	65630763	65695261	R	chromosome 4 open reading frame 29 [Source:HGNC Symbol;Acc:HGNC:26111]
ENSCJAG00000010461	NOVEL	pseudogene	ENSCJAG00000010461	chromosome:C_jacchus3.2.1:10:1:132174527:1	9072030	9072397	D	<no descrition>
ENSCJAG00000031973	NOVEL	protein_coding	ENSCJAG00000031973	chromosome:C_jacchus3.2.1:1:1:210400635:1	75289727	75290233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043216}  [Source:UniProtKB/TrEMBL;Acc:F7ICR8]
ENSCJAG00000002768	KNOWN	protein_coding	ERLIN2	chromosome:C_jacchus3.2.1:13:1:117903854:1	35587948	35604826	D	Erlin-2 isoform 1 {ECO:0000313|EMBL:JAB03219.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005045}  [Source:UniProtKB/TrEMBL;Acc:F7I0Y3]
ENSCJAG00000002783	NOVEL	pseudogene	ENSCJAG00000002783	chromosome:C_jacchus3.2.1:13:1:117903854:1	35587163	35587801	R	<no descrition>
ENSCJAG00000002785	KNOWN_BY_PROJECTION	protein_coding	ZNF703	chromosome:C_jacchus3.2.1:13:1:117903854:1	35544208	35547599	D	zinc finger protein 703 [Source:HGNC Symbol;Acc:HGNC:25883]
ENSCJAG00000032388	NOVEL	pseudogene	ENSCJAG00000032388	chromosome:C_jacchus3.2.1:13:1:117903854:1	35279515	35279849	D	<no descrition>
ENSCJAG00000031272	NOVEL	protein_coding	ENSCJAG00000031272	chromosome:C_jacchus3.2.1:13:1:117903854:1	35041566	35042839	D	<no descrition>
ENSCJAG00000018847	KNOWN	protein_coding	CBX5	chromosome:C_jacchus3.2.1:9:1:124281992:1	43176809	43218435	R	Chromobox protein homolog 5 {ECO:0000313|EMBL:JAB01790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035012}  [Source:UniProtKB/TrEMBL;Acc:F7IG39]
ENSCJAG00000008462	KNOWN_BY_PROJECTION	protein_coding	CHEK1	chromosome:C_jacchus3.2.1:11:1:130397257:1	23488776	23539966	D	checkpoint kinase 1 [Source:HGNC Symbol;Acc:HGNC:1925]
ENSCJAG00000015875	KNOWN_BY_PROJECTION	protein_coding	SLC12A4	chromosome:C_jacchus3.2.1:20:1:44557958:1	21710924	21739161	R	solute carrier family 12 (potassium/chloride transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
ENSCJAG00000002801	KNOWN_BY_PROJECTION	protein_coding	KCNU1	chromosome:C_jacchus3.2.1:13:1:117903854:1	34593644	34740333	D	potassium channel, subfamily U, member 1 [Source:HGNC Symbol;Acc:HGNC:18867]
ENSCJAG00000007113	KNOWN_BY_PROJECTION	protein_coding	SEZ6L2	chromosome:C_jacchus3.2.1:12:1:121768101:1	27963129	27991541	D	seizure related 6 homolog (mouse)-like 2 [Source:HGNC Symbol;Acc:HGNC:30844]
ENSCJAG00000035954	NOVEL	pseudogene	ENSCJAG00000035954	chromosome:C_jacchus3.2.1:13:1:117903854:1	33690818	33691114	D	<no descrition>
ENSCJAG00000002818	KNOWN	protein_coding	UNC5D	chromosome:C_jacchus3.2.1:13:1:117903854:1	33441314	33692485	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005143}  [Source:UniProtKB/TrEMBL;Acc:F7IJP5]
ENSCJAG00000007668	KNOWN_BY_PROJECTION	protein_coding	EGFLAM	chromosome:C_jacchus3.2.1:2:1:204313951:1	165003472	165231458	R	EGF-like, fibronectin type III and laminin G domains [Source:HGNC Symbol;Acc:HGNC:26810]
ENSCJAG00000002841	NOVEL	pseudogene	ENSCJAG00000002841	chromosome:C_jacchus3.2.1:13:1:117903854:1	32688410	32688961	D	<no descrition>
ENSCJAG00000002844	NOVEL	protein_coding	ENSCJAG00000002844	chromosome:C_jacchus3.2.1:13:1:117903854:1	32287927	32288510	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005160}  [Source:UniProtKB/TrEMBL;Acc:F7IF25]
ENSCJAG00000003338	NOVEL	protein_coding	ENSCJAG00000003338	chromosome:C_jacchus3.2.1:3:1:190850796:1	65523270	65583916	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006071}  [Source:UniProtKB/TrEMBL;Acc:F7GKN2]
ENSCJAG00000033918	NOVEL	protein_coding	ENSCJAG00000033918	chromosome:C_jacchus3.2.1:13:1:117903854:1	31871153	31871980	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052024}  [Source:UniProtKB/TrEMBL;Acc:F7IJB6]
ENSCJAG00000033227	KNOWN_BY_PROJECTION	protein_coding	BUD31	chromosome:C_jacchus3.2.1:13:1:117903854:1	31669845	31672112	R	BUD31 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29629]
ENSCJAG00000007554	KNOWN	protein_coding	DUSP26	chromosome:C_jacchus3.2.1:13:1:117903854:1	31614322	31622484	R	Dual specificity protein phosphatase 26 {ECO:0000313|EMBL:JAB07110.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014054}  [Source:UniProtKB/TrEMBL;Acc:F7HXW2]
ENSCJAG00000013291	NOVEL	protein_coding	ENSCJAG00000013291	chromosome:C_jacchus3.2.1:1:1:210400635:1	75215081	75223901	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024396}  [Source:UniProtKB/TrEMBL;Acc:F7GMS2]
ENSCJAG00000018842	KNOWN	protein_coding	SMUG1	chromosome:C_jacchus3.2.1:9:1:124281992:1	43110774	43118557	R	Single-strand selective monofunctional uracil DNA glycosylase isoform 1 {ECO:0000313|EMBL:JAB02390.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034993}  [Source:UniProtKB/TrEMBL;Acc:F7I3E8]
ENSCJAG00000007570	KNOWN	protein_coding	RNF122	chromosome:C_jacchus3.2.1:13:1:117903854:1	31571493	31593001	R	RING finger protein 122 {ECO:0000313|EMBL:JAB05157.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014065}  [Source:UniProtKB/TrEMBL;Acc:F7HVI7]
ENSCJAG00000000417	KNOWN_BY_PROJECTION	protein_coding	ALYREF	chromosome:C_jacchus3.2.1:1:1:210400635:1	75202565	75203309	D	Aly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]
ENSCJAG00000000420	NOVEL	protein_coding	ENSCJAG00000000420	chromosome:C_jacchus3.2.1:1:1:210400635:1	75125505	75172804	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000714}  [Source:UniProtKB/TrEMBL;Acc:F6SEB8]
ENSCJAG00000032465	NOVEL	protein_coding	ENSCJAG00000032465	chromosome:C_jacchus3.2.1:3:1:190850796:1	65395565	65450825	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006082}  [Source:UniProtKB/TrEMBL;Acc:F7GAG1]
ENSCJAG00000007580	KNOWN	protein_coding	TTI2	chromosome:C_jacchus3.2.1:13:1:117903854:1	31510980	31526549	R	TELO2-interacting protein 2 {ECO:0000313|EMBL:JAB18422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014087}  [Source:UniProtKB/TrEMBL;Acc:F7HQT3]
ENSCJAG00000007108	KNOWN_BY_PROJECTION	protein_coding	ASPHD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	27942783	27961364	R	aspartate beta-hydroxylase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27380]
ENSCJAG00000000423	NOVEL	pseudogene	ENSCJAG00000000423	chromosome:C_jacchus3.2.1:1:1:210400635:1	75026201	75027756	D	<no descrition>
ENSCJAG00000031855	NOVEL	pseudogene	ENSCJAG00000031855	chromosome:C_jacchus3.2.1:1:1:210400635:1	74979800	74980825	D	<no descrition>
ENSCJAG00000018835	KNOWN_BY_PROJECTION	protein_coding	HOXC6	chromosome:C_jacchus3.2.1:9:1:124281992:1	42941765	42956148	D	homeobox C6 [Source:HGNC Symbol;Acc:HGNC:5128]
ENSCJAG00000005123	KNOWN_BY_PROJECTION	protein_coding	DZANK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	23991732	24077644	R	double zinc ribbon and ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:HGNC:15858]
ENSCJAG00000001600	NOVEL	protein_coding	ENSCJAG00000001600	chromosome:C_jacchus3.2.1:1:1:210400635:1	74879927	74888408	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002861}  [Source:UniProtKB/TrEMBL;Acc:F7I928]
ENSCJAG00000007596	KNOWN	protein_coding	MAK16	chromosome:C_jacchus3.2.1:13:1:117903854:1	31499843	31513341	D	Protein MAK16 homolog {ECO:0000313|EMBL:JAB08085.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014111}  [Source:UniProtKB/TrEMBL;Acc:F7IJ04]
ENSCJAG00000035592	KNOWN	protein_coding	HOXC4	chromosome:C_jacchus3.2.1:9:1:124281992:1	42941765	42981757	D	Homeobox protein Hox-C4 {ECO:0000313|EMBL:JAB03970.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034970}  [Source:UniProtKB/TrEMBL;Acc:F7I3I7]
ENSCJAG00000018828	KNOWN_BY_PROJECTION	protein_coding	HOXC8	chromosome:C_jacchus3.2.1:9:1:124281992:1	42934244	42936236	D	homeobox C8 [Source:HGNC Symbol;Acc:HGNC:5129]
ENSCJAG00000018819	KNOWN	protein_coding	HOXC9	chromosome:C_jacchus3.2.1:9:1:124281992:1	42923918	42927161	D	Homeobox protein Hox-C9 {ECO:0000313|EMBL:JAB37362.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034958}  [Source:UniProtKB/TrEMBL;Acc:F7I5W0]
ENSCJAG00000007613	NOVEL	protein_coding	ENSCJAG00000007613	chromosome:C_jacchus3.2.1:13:1:117903854:1	31454355	31455047	R	<no descrition>
ENSCJAG00000007608	KNOWN	protein_coding	LIFR	chromosome:C_jacchus3.2.1:2:1:204313951:1	164875664	164986858	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014200}  [Source:UniProtKB/TrEMBL;Acc:F7HXQ4]
ENSCJAG00000007098	KNOWN	protein_coding	KCTD13	chromosome:C_jacchus3.2.1:12:1:121768101:1	27936447	27955817	D	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 {ECO:0000313|EMBL:JAB01882.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013184}  [Source:UniProtKB/TrEMBL;Acc:F7C0X8]
ENSCJAG00000007543	KNOWN	protein_coding	FUT10	chromosome:C_jacchus3.2.1:13:1:117903854:1	31383022	31476901	R	Alpha-(1,3)-fucosyltransferase 10 {ECO:0000313|EMBL:JAB46342.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014028}  [Source:UniProtKB/TrEMBL;Acc:F7I2J1]
ENSCJAG00000003328	NOVEL	protein_coding	ENSCJAG00000003328	chromosome:C_jacchus3.2.1:3:1:190850796:1	65313714	65335749	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006053}  [Source:UniProtKB/TrEMBL;Acc:F7GWH0]
ENSCJAG00000034634	NOVEL	pseudogene	ENSCJAG00000034634	chromosome:C_jacchus3.2.1:2:1:204313951:1	164564176	164564943	R	<no descrition>
ENSCJAG00000018811	KNOWN	protein_coding	HOXC10	chromosome:C_jacchus3.2.1:9:1:124281992:1	42906999	42910633	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034949}  [Source:UniProtKB/TrEMBL;Acc:F7I876]
ENSCJAG00000003325	NOVEL	pseudogene	ENSCJAG00000003325	chromosome:C_jacchus3.2.1:3:1:190850796:1	64934560	64934921	R	<no descrition>
ENSCJAG00000005118	NOVEL	pseudogene	ENSCJAG00000005118	chromosome:C_jacchus3.2.1:5:1:159171411:1	23975186	23975607	D	<no descrition>
ENSCJAG00000003321	NOVEL	pseudogene	ENSCJAG00000003321	chromosome:C_jacchus3.2.1:3:1:190850796:1	64734629	64735455	D	<no descrition>
ENSCJAG00000018808	KNOWN_BY_PROJECTION	protein_coding	HOXC11	chromosome:C_jacchus3.2.1:9:1:124281992:1	42892917	42896224	D	homeobox C11 [Source:HGNC Symbol;Acc:HGNC:5123]
ENSCJAG00000018806	KNOWN_BY_PROJECTION	protein_coding	HOXC12	chromosome:C_jacchus3.2.1:9:1:124281992:1	42874450	42876069	D	homeobox C12 [Source:HGNC Symbol;Acc:HGNC:5124]
ENSCJAG00000008400	KNOWN	protein_coding	STT3A	chromosome:C_jacchus3.2.1:11:1:130397257:1	23452568	23482269	D	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A {ECO:0000313|EMBL:JAB04212.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015569}  [Source:UniProtKB/TrEMBL;Acc:F7DU72]
ENSCJAG00000036396	KNOWN_BY_PROJECTION	protein_coding	LCAT	chromosome:C_jacchus3.2.1:20:1:44557958:1	21705772	21711377	R	lecithin-cholesterol acyltransferase [Source:HGNC Symbol;Acc:HGNC:6522]
ENSCJAG00000007082	KNOWN	protein_coding	TMEM219	chromosome:C_jacchus3.2.1:12:1:121768101:1	27895084	27924569	R	Insulin-like growth factor-binding protein 3 receptor {ECO:0000313|EMBL:JAB22084.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013160}  [Source:UniProtKB/TrEMBL;Acc:F6UBK7]
ENSCJAG00000018800	KNOWN_BY_PROJECTION	protein_coding	HOXC13	chromosome:C_jacchus3.2.1:9:1:124281992:1	42858419	42866061	D	homeobox C13 [Source:HGNC Symbol;Acc:HGNC:5125]
ENSCJAG00000005089	NOVEL	protein_coding	ENSCJAG00000005089	chromosome:C_jacchus3.2.1:5:1:159171411:1	23880282	23906205	D	<no descrition>
ENSCJAG00000003152	KNOWN_BY_PROJECTION	protein_coding	DDX39B	chromosome:C_jacchus3.2.1:4:1:171630274:1	32058587	32071648	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:HGNC Symbol;Acc:HGNC:13917]
ENSCJAG00000020520	KNOWN_BY_PROJECTION	protein_coding	FGD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	74748649	74836593	D	FYVE, RhoGEF and PH domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16027]
ENSCJAG00000003295	KNOWN	protein_coding	JADE1	chromosome:C_jacchus3.2.1:3:1:190850796:1	64654588	64721688	R	Protein Jade-1 long isoform {ECO:0000313|EMBL:JAB05977.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006021}  [Source:UniProtKB/TrEMBL;Acc:F7H6X8]
ENSCJAG00000003290	NOVEL	protein_coding	ENSCJAG00000003290	chromosome:C_jacchus3.2.1:3:1:190850796:1	64479828	64482378	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005985}  [Source:UniProtKB/TrEMBL;Acc:F7I9N3]
ENSCJAG00000015937	KNOWN	protein_coding	PSMB10	chromosome:C_jacchus3.2.1:20:1:44557958:1	21700702	21703028	R	Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}  [Source:UniProtKB/TrEMBL;Acc:F7I7T7]
ENSCJAG00000007558	KNOWN	protein_coding	LCTL	chromosome:C_jacchus3.2.1:10:1:132174527:1	8945924	8967835	R	Lactase-like protein {ECO:0000313|EMBL:JAB21085.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014058}  [Source:UniProtKB/TrEMBL;Acc:F7HXV9]
ENSCJAG00000003227	NOVEL	protein_coding	MCCD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	32057410	32058599	D	Mitochondrial coiled-coil domain protein 1 {ECO:0000313|EMBL:BAK53242.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005882}  [Source:UniProtKB/TrEMBL;Acc:F7HKK6]
ENSCJAG00000003278	KNOWN_BY_PROJECTION	protein_coding	SCLT1	chromosome:C_jacchus3.2.1:3:1:190850796:1	64336659	64635156	D	sodium channel and clathrin linker 1 [Source:HGNC Symbol;Acc:HGNC:26406]
ENSCJAG00000005057	KNOWN_BY_PROJECTION	protein_coding	CSRP2BP	chromosome:C_jacchus3.2.1:5:1:159171411:1	23757109	23797433	D	CSRP2 binding protein [Source:HGNC Symbol;Acc:HGNC:15904]
ENSCJAG00000037233	KNOWN_BY_PROJECTION	protein_coding	PET117	chromosome:C_jacchus3.2.1:5:1:159171411:1	23752043	23758043	D	PET117 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:40045]
ENSCJAG00000020519	KNOWN	protein_coding	BICD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	74623318	74677249	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038130}  [Source:UniProtKB/TrEMBL;Acc:F7I795]
ENSCJAG00000015948	KNOWN_BY_PROJECTION	protein_coding	CTRL	chromosome:C_jacchus3.2.1:20:1:44557958:1	21696288	21698590	R	chymotrypsin-like [Source:HGNC Symbol;Acc:HGNC:2524]
ENSCJAG00000003274	KNOWN	protein_coding	C4ORF33	chromosome:C_jacchus3.2.1:3:1:190850796:1	64316992	64515313	R	UPF0462 protein C4orf33 {ECO:0000313|EMBL:JAB02456.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046230}  [Source:UniProtKB/TrEMBL;Acc:F7BTN8]
ENSCJAG00000007577	KNOWN_BY_PROJECTION	protein_coding	OSMR	chromosome:C_jacchus3.2.1:2:1:204313951:1	164520612	164609957	R	oncostatin M receptor [Source:HGNC Symbol;Acc:HGNC:8507]
ENSCJAG00000020513	KNOWN_BY_PROJECTION	protein_coding	IPPK	chromosome:C_jacchus3.2.1:1:1:210400635:1	74499368	74557309	R	inositol 1,3,4,5,6-pentakisphosphate 2-kinase [Source:HGNC Symbol;Acc:HGNC:14645]
ENSCJAG00000015958	KNOWN	protein_coding	PSKH1	chromosome:C_jacchus3.2.1:20:1:44557958:1	21653366	21696391	D	Serine/threonine-protein kinase H1 {ECO:0000313|EMBL:JAB07377.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029384}  [Source:UniProtKB/TrEMBL;Acc:F7I5C9]
ENSCJAG00000020482	NOVEL	protein_coding	ENSCJAG00000020482	chromosome:C_jacchus3.2.1:1:1:210400635:1	74494264	74496477	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038060}  [Source:UniProtKB/TrEMBL;Acc:F7IR37]
ENSCJAG00000003270	NOVEL	protein_coding	ENSCJAG00000003270	chromosome:C_jacchus3.2.1:3:1:190850796:1	64281145	64282109	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005946}  [Source:UniProtKB/TrEMBL;Acc:F7IED3]
ENSCJAG00000005049	KNOWN	protein_coding	OVOL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	23624191	23667228	R	Transcription factor Ovo-like 2 {ECO:0000313|EMBL:JAB08173.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009203}  [Source:UniProtKB/TrEMBL;Acc:F7IDA5]
ENSCJAG00000007626	KNOWN	protein_coding	NRG1	chromosome:C_jacchus3.2.1:13:1:117903854:1	30532814	30766108	D	Pro-neuregulin-1, membrane-bound isoform isoform SMDF {ECO:0000313|EMBL:JAB14014.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014230}  [Source:UniProtKB/TrEMBL;Acc:F7HVB8]
ENSCJAG00000003232	NOVEL	protein_coding	ENSCJAG00000003232	chromosome:C_jacchus3.2.1:4:1:171630274:1	32017360	32027422	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005898}  [Source:UniProtKB/TrEMBL;Acc:F7IRA0]
ENSCJAG00000015962	KNOWN_BY_PROJECTION	protein_coding	NRN1L	chromosome:C_jacchus3.2.1:20:1:44557958:1	21645573	21647859	D	neuritin 1-like [Source:HGNC Symbol;Acc:HGNC:29811]
ENSCJAG00000032895	NOVEL	pseudogene	ENSCJAG00000032895	chromosome:C_jacchus3.2.1:4:1:171630274:1	31964605	31965935	R	<no descrition>
ENSCJAG00000003242	NOVEL	pseudogene	ENSCJAG00000003242	chromosome:C_jacchus3.2.1:4:1:171630274:1	31919908	31921034	D	<no descrition>
ENSCJAG00000005037	KNOWN	protein_coding	MGME1	chromosome:C_jacchus3.2.1:5:1:159171411:1	23577890	23596941	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009193}; Uncharacterized protein C20orf72 {ECO:0000313|EMBL:JAB04196.1}  [Source:UniProtKB/TrEMBL;Acc:F7II48]
ENSCJAG00000034890	NOVEL	protein_coding	ENSCJAG00000034890	chromosome:C_jacchus3.2.1:4:1:171630274:1	31705641	31736667	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019777}  [Source:UniProtKB/TrEMBL;Acc:F6WDF0]
ENSCJAG00000033574	NOVEL	protein_coding	ENSCJAG00000033574	chromosome:C_jacchus3.2.1:4:1:171630274:1	31704566	31705498	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047885}  [Source:UniProtKB/TrEMBL;Acc:F7GLS9]
ENSCJAG00000018726	KNOWN	protein_coding	CALCOCO1	chromosome:C_jacchus3.2.1:9:1:124281992:1	42610931	42629017	R	Calcium-binding and coiled-coil domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB06072.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034920}  [Source:UniProtKB/TrEMBL;Acc:F7ICV7]
ENSCJAG00000007524	KNOWN_BY_PROJECTION	protein_coding	ZWILCH	chromosome:C_jacchus3.2.1:10:1:132174527:1	8904055	8947868	D	zwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]
ENSCJAG00000008390	KNOWN	protein_coding	EI24	chromosome:C_jacchus3.2.1:11:1:130397257:1	23431540	23446813	D	Etoposide-induced protein 2.4 homolog isoform 1 {ECO:0000313|EMBL:JAB30187.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015440}  [Source:UniProtKB/TrEMBL;Acc:F7GUJ7]
ENSCJAG00000004947	KNOWN_BY_PROJECTION	protein_coding	SNX5	chromosome:C_jacchus3.2.1:5:1:159171411:1	23552090	23577690	R	sorting nexin 5 [Source:HGNC Symbol;Acc:HGNC:14969]
ENSCJAG00000018724	NOVEL	protein_coding	ENSCJAG00000018724	chromosome:C_jacchus3.2.1:9:1:124281992:1	42579366	42579758	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034781}  [Source:UniProtKB/TrEMBL;Acc:F7I3K8]
ENSCJAG00000033009	NOVEL	protein_coding	ENSCJAG00000033009	chromosome:C_jacchus3.2.1:3:1:190850796:1	64275364	64277821	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044226}  [Source:UniProtKB/TrEMBL;Acc:F7E1B6]
ENSCJAG00000003264	NOVEL	protein_coding	ENSCJAG00000003264	chromosome:C_jacchus3.2.1:3:1:190850796:1	63380299	63381569	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005939}  [Source:UniProtKB/TrEMBL;Acc:F7IEE9]
ENSCJAG00000034868	NOVEL	protein_coding	ENSCJAG00000034868	chromosome:C_jacchus3.2.1:3:1:190850796:1	62358462	62359316	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043725}  [Source:UniProtKB/TrEMBL;Acc:F7HS65]
ENSCJAG00000007491	NOVEL	protein_coding	ENSCJAG00000007491	chromosome:C_jacchus3.2.1:10:1:132174527:1	8898327	8903784	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013966}  [Source:UniProtKB/TrEMBL;Acc:F6VWQ9]
ENSCJAG00000003262	NOVEL	pseudogene	ENSCJAG00000003262	chromosome:C_jacchus3.2.1:3:1:190850796:1	61492360	61492625	D	<no descrition>
ENSCJAG00000004945	KNOWN_BY_PROJECTION	protein_coding	BANF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	23301963	23344127	D	barrier to autointegration factor 2 [Source:HGNC Symbol;Acc:HGNC:16172]
ENSCJAG00000007484	KNOWN	protein_coding	SNAPC5	chromosome:C_jacchus3.2.1:10:1:132174527:1	8889316	8896674	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013910}; snRNA-activating protein complex subunit 5 {ECO:0000313|EMBL:JAB05816.1}  [Source:UniProtKB/TrEMBL;Acc:F6XQF1]
ENSCJAG00000004913	KNOWN_BY_PROJECTION	protein_coding	RRBP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	23211454	23258726	R	ribosome binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10448]
ENSCJAG00000004905	KNOWN	protein_coding	DSTN	chromosome:C_jacchus3.2.1:5:1:159171411:1	23170322	23205157	D	Destrin isoform a {ECO:0000313|EMBL:JAB20779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008960}  [Source:UniProtKB/TrEMBL;Acc:F7I5M6]
ENSCJAG00000008336	KNOWN	protein_coding	FEZ1	chromosome:C_jacchus3.2.1:11:1:130397257:1	23309214	23366389	R	Fasciculation and elongation protein zeta-1 isoform 1 {ECO:0000313|EMBL:JAB08576.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015430}  [Source:UniProtKB/TrEMBL;Acc:F7GUQ5]
ENSCJAG00000006995	KNOWN_BY_PROJECTION	protein_coding	TAOK2	chromosome:C_jacchus3.2.1:12:1:121768101:1	27875361	27894251	R	TAO kinase 2 [Source:HGNC Symbol;Acc:HGNC:16835]
ENSCJAG00000004885	KNOWN_BY_PROJECTION	protein_coding	BFSP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	23088557	23133344	R	beaded filament structural protein 1, filensin [Source:HGNC Symbol;Acc:HGNC:1040]
ENSCJAG00000007501	KNOWN	protein_coding	RICTOR	chromosome:C_jacchus3.2.1:2:1:204313951:1	164379666	164517409	D	Rapamycin-insensitive companion of mTOR {ECO:0000313|EMBL:JAB32803.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014056}  [Source:UniProtKB/TrEMBL;Acc:F7HXW1]
ENSCJAG00000020502	KNOWN_BY_PROJECTION	protein_coding	ECM2	chromosome:C_jacchus3.2.1:1:1:210400635:1	74384727	74425043	R	extracellular matrix protein 2, female organ and adipocyte specific [Source:HGNC Symbol;Acc:HGNC:3154]
ENSCJAG00000020495	KNOWN	protein_coding	ASPN	chromosome:C_jacchus3.2.1:1:1:210400635:1	74342473	74371751	R	Asporin isoform 1 preproprotein {ECO:0000313|EMBL:JAB09059.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038093}  [Source:UniProtKB/TrEMBL;Acc:F7ILC6]
ENSCJAG00000007498	NOVEL	pseudogene	ENSCJAG00000007498	chromosome:C_jacchus3.2.1:2:1:204313951:1	164345499	164345704	R	<no descrition>
ENSCJAG00000020491	KNOWN_BY_PROJECTION	protein_coding	OMD	chromosome:C_jacchus3.2.1:1:1:210400635:1	74308236	74316426	R	osteomodulin [Source:HGNC Symbol;Acc:HGNC:8134]
ENSCJAG00000012511	KNOWN_BY_PROJECTION	protein_coding	WRN	chromosome:C_jacchus3.2.1:13:1:117903854:1	29051442	29179758	D	Werner syndrome, RecQ helicase-like [Source:HGNC Symbol;Acc:HGNC:12791]
ENSCJAG00000007460	KNOWN	protein_coding	MAP2K1	chromosome:C_jacchus3.2.1:10:1:132174527:1	8783830	8890521	D	Dual specificity mitogen-activated protein kinase kinase 1 {ECO:0000313|EMBL:JAB06971.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013904}  [Source:UniProtKB/TrEMBL;Acc:F6XQS5]
ENSCJAG00000003244	KNOWN_BY_PROJECTION	protein_coding	PCDH10	chromosome:C_jacchus3.2.1:3:1:190850796:1	60101995	60144758	R	protocadherin 10 [Source:HGNC Symbol;Acc:HGNC:13404]
ENSCJAG00000012509	KNOWN	protein_coding	PURG	chromosome:C_jacchus3.2.1:13:1:117903854:1	28991365	29029069	R	Purine-rich element-binding protein gamma isoform B {ECO:0000313|EMBL:JAB13026.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022895}  [Source:UniProtKB/TrEMBL;Acc:F7IME5]
ENSCJAG00000003236	NOVEL	pseudogene	ENSCJAG00000003236	chromosome:C_jacchus3.2.1:3:1:190850796:1	58844121	58847825	D	<no descrition>
ENSCJAG00000012503	NOVEL	protein_coding	ENSCJAG00000012503	chromosome:C_jacchus3.2.1:13:1:117903854:1	28812687	28817680	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022888}  [Source:UniProtKB/TrEMBL;Acc:F7IPP1]
ENSCJAG00000035477	NOVEL	pseudogene	ENSCJAG00000035477	chromosome:C_jacchus3.2.1:3:1:190850796:1	58155361	58156195	R	<no descrition>
ENSCJAG00000007485	KNOWN_BY_PROJECTION	protein_coding	FYB	chromosome:C_jacchus3.2.1:2:1:204313951:1	164229388	164343547	D	FYN binding protein [Source:HGNC Symbol;Acc:HGNC:4036]
ENSCJAG00000032966	NOVEL	pseudogene	ENSCJAG00000032966	chromosome:C_jacchus3.2.1:3:1:190850796:1	57530095	57530969	D	<no descrition>
ENSCJAG00000003230	NOVEL	protein_coding	ENSCJAG00000003230	chromosome:C_jacchus3.2.1:3:1:190850796:1	56273609	56275308	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005893}  [Source:UniProtKB/TrEMBL;Acc:F7IRA5]
ENSCJAG00000015963	KNOWN_BY_PROJECTION	protein_coding	EDC4	chromosome:C_jacchus3.2.1:20:1:44557958:1	21633887	21645203	D	enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:HGNC:17157]
ENSCJAG00000007477	KNOWN_BY_PROJECTION	protein_coding	C9	chromosome:C_jacchus3.2.1:2:1:204313951:1	164097263	164176114	D	complement component 9 [Source:HGNC Symbol;Acc:HGNC:1358]
ENSCJAG00000008279	KNOWN	protein_coding	PKNOX2	chromosome:C_jacchus3.2.1:11:1:130397257:1	23024780	23297639	D	Homeobox protein PKNOX2 {ECO:0000313|EMBL:JAB20451.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015353}  [Source:UniProtKB/TrEMBL;Acc:F7DEV1]
ENSCJAG00000012460	KNOWN	protein_coding	PPP2CB	chromosome:C_jacchus3.2.1:13:1:117903854:1	28769719	28799012	R	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F6XZ20]
ENSCJAG00000006978	KNOWN_BY_PROJECTION	protein_coding	HIRIP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	27871590	27874660	D	HIRA interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:4917]
ENSCJAG00000003221	KNOWN_BY_PROJECTION	protein_coding	PCDH18	chromosome:C_jacchus3.2.1:3:1:190850796:1	55653371	55667309	D	protocadherin 18 [Source:HGNC Symbol;Acc:HGNC:14268]
ENSCJAG00000007426	KNOWN	protein_coding	DAB2	chromosome:C_jacchus3.2.1:2:1:204313951:1	164035204	164088299	D	Disabled homolog 2 isoform 1 {ECO:0000313|EMBL:JAB07823.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013891}  [Source:UniProtKB/TrEMBL;Acc:F6ZV49]
ENSCJAG00000012451	KNOWN_BY_PROJECTION	protein_coding	UBXN8	chromosome:C_jacchus3.2.1:13:1:117903854:1	28722743	28751157	D	UBX domain protein 8 [Source:HGNC Symbol;Acc:HGNC:30307]
ENSCJAG00000018699	KNOWN	protein_coding	ATF7	chromosome:C_jacchus3.2.1:9:1:124281992:1	42396926	42520158	R	Cyclic AMP-dependent transcription factor ATF-7 isoform 2 {ECO:0000313|EMBL:JAB05498.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034773}  [Source:UniProtKB/TrEMBL;Acc:F7I3M2]
ENSCJAG00000008277	NOVEL	protein_coding	ENSCJAG00000008277	chromosome:C_jacchus3.2.1:11:1:130397257:1	22962630	22963276	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044439}  [Source:UniProtKB/TrEMBL;Acc:F7D133]
ENSCJAG00000007419	NOVEL	protein_coding	ENSCJAG00000007419	chromosome:C_jacchus3.2.1:2:1:204313951:1	163976574	163977246	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013798}  [Source:UniProtKB/TrEMBL;Acc:F6VCK4]
ENSCJAG00000007410	KNOWN_BY_PROJECTION	protein_coding	PTGER4	chromosome:C_jacchus3.2.1:2:1:204313951:1	162743078	162756449	R	prostaglandin E receptor 4 (subtype EP4) [Source:HGNC Symbol;Acc:HGNC:9596]
ENSCJAG00000008272	KNOWN	protein_coding	TMEM218	chromosome:C_jacchus3.2.1:11:1:130397257:1	22941610	22960392	R	Transmembrane protein 218 isoform 2 {ECO:0000313|EMBL:JAB42448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051834}  [Source:UniProtKB/TrEMBL;Acc:F6X530]
ENSCJAG00000012407	KNOWN	protein_coding	GSR	chromosome:C_jacchus3.2.1:13:1:117903854:1	28635150	28699810	R	Callithrix jacchus glutathione reductase (GSR), mRNA. [Source:RefSeq mRNA;Acc:NM_001185045]
ENSCJAG00000004853	KNOWN	protein_coding	PCSK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	22819751	23076788	D	Neuroendocrine convertase 2 isoform 2 preproprotein {ECO:0000313|EMBL:JAB18354.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046772}  [Source:UniProtKB/TrEMBL;Acc:F7I1B8]
ENSCJAG00000006954	KNOWN	protein_coding	INO80E	chromosome:C_jacchus3.2.1:12:1:121768101:1	27861448	27871434	R	INO80 complex subunit E {ECO:0000313|EMBL:JAB14587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012918}  [Source:UniProtKB/TrEMBL;Acc:F6S1N0]
ENSCJAG00000018696	KNOWN	protein_coding	NPFF	chromosome:C_jacchus3.2.1:9:1:124281992:1	42395448	42396400	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034734}  [Source:UniProtKB/TrEMBL;Acc:F7IAP6]
ENSCJAG00000016015	KNOWN	protein_coding	NUTF2	chromosome:C_jacchus3.2.1:20:1:44557958:1	21606376	21632532	D	Nuclear transport factor 2 {ECO:0000313|EMBL:JAB05746.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029472}  [Source:UniProtKB/TrEMBL;Acc:F7IRG6]
ENSCJAG00000020486	KNOWN_BY_PROJECTION	protein_coding	OGN	chromosome:C_jacchus3.2.1:1:1:210400635:1	74275311	74298026	R	osteoglycin [Source:HGNC Symbol;Acc:HGNC:8126]
ENSCJAG00000033137	KNOWN	protein_coding	THAP11	chromosome:C_jacchus3.2.1:20:1:44557958:1	21601496	21601942	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041943}  [Source:UniProtKB/TrEMBL;Acc:F7GP30]
ENSCJAG00000004842	KNOWN_BY_PROJECTION	protein_coding	OTOR	chromosome:C_jacchus3.2.1:5:1:159171411:1	22399721	22403489	D	otoraplin [Source:HGNC Symbol;Acc:HGNC:8517]
ENSCJAG00000034429	NOVEL	protein_coding	ENSCJAG00000034429	chromosome:C_jacchus3.2.1:1:1:210400635:1	74201333	74271155	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038063}  [Source:UniProtKB/TrEMBL;Acc:F7IR31]
ENSCJAG00000003246	NOVEL	protein_coding	ENSCJAG00000003246	chromosome:C_jacchus3.2.1:4:1:171630274:1	31704257	31863225	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002864}  [Source:UniProtKB/TrEMBL;Acc:F7I925]
ENSCJAG00000012399	KNOWN	protein_coding	GTF2E2	chromosome:C_jacchus3.2.1:13:1:117903854:1	28535542	28614715	R	Transcription initiation factor IIE subunit beta {ECO:0000313|EMBL:JAB02104.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022714}  [Source:UniProtKB/TrEMBL;Acc:F7IFJ1]
ENSCJAG00000003185	KNOWN	protein_coding	SLC7A11	chromosome:C_jacchus3.2.1:3:1:190850796:1	54863959	54941556	D	Cystine/glutamate transporter {ECO:0000313|EMBL:JAB22217.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022527}  [Source:UniProtKB/TrEMBL;Acc:F7IFK5]
ENSCJAG00000008209	KNOWN	protein_coding	SLC37A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	22910446	22934794	D	Sugar phosphate exchanger 2 isoform 2 {ECO:0000313|EMBL:JAB14763.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015261}  [Source:UniProtKB/TrEMBL;Acc:F7G664]
ENSCJAG00000012366	KNOWN	protein_coding	RBPMS	chromosome:C_jacchus3.2.1:13:1:117903854:1	28333463	28527392	D	RNA-binding protein with multiple splicing isoform C {ECO:0000313|EMBL:JAB17625.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022690}  [Source:UniProtKB/TrEMBL;Acc:F7IMJ9]
ENSCJAG00000016022	KNOWN_BY_PROJECTION	protein_coding	CENPT	chromosome:C_jacchus3.2.1:20:1:44557958:1	21584352	21592762	R	centromere protein T [Source:HGNC Symbol;Acc:HGNC:25787]
ENSCJAG00000031647	NOVEL	protein_coding	ENSCJAG00000031647	chromosome:C_jacchus3.2.1:3:1:190850796:1	54491255	54493634	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047987}  [Source:UniProtKB/TrEMBL;Acc:F7D408]
ENSCJAG00000012364	NOVEL	protein_coding	ENSCJAG00000012364	chromosome:C_jacchus3.2.1:13:1:117903854:1	28183123	28185158	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052284}  [Source:UniProtKB/TrEMBL;Acc:F7IGT7]
ENSCJAG00000012360	NOVEL	protein_coding	ENSCJAG00000012360	chromosome:C_jacchus3.2.1:13:1:117903854:1	28101749	28102363	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022634}  [Source:UniProtKB/TrEMBL;Acc:F7HTY1]
ENSCJAG00000007398	KNOWN	protein_coding	TTC33	chromosome:C_jacchus3.2.1:2:1:204313951:1	162686521	162724743	D	Tetratricopeptide repeat protein 33 {ECO:0000313|EMBL:JAB05374.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013773}  [Source:UniProtKB/TrEMBL;Acc:F6VXV8]
ENSCJAG00000012338	KNOWN	protein_coding	DCTN6	chromosome:C_jacchus3.2.1:13:1:117903854:1	28084019	28114529	D	Dynactin subunit 6 {ECO:0000313|EMBL:JAB11952.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022619}  [Source:UniProtKB/TrEMBL;Acc:F7HWQ5]
ENSCJAG00000007388	KNOWN_BY_PROJECTION	protein_coding	RPL37	chromosome:C_jacchus3.2.1:2:1:204313951:1	162605648	162609507	D	ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
ENSCJAG00000006908	KNOWN	protein_coding	DOC2A	chromosome:C_jacchus3.2.1:12:1:121768101:1	27855901	27861717	D	Double C2-like domain-containing protein {ECO:0000256|PIRNR:PIRNR036931}  [Source:UniProtKB/TrEMBL;Acc:F6TWS2]
ENSCJAG00000020481	KNOWN_BY_PROJECTION	protein_coding	NOL8	chromosome:C_jacchus3.2.1:1:1:210400635:1	74173159	74199576	R	nucleolar protein 8 [Source:HGNC Symbol;Acc:HGNC:23387]
ENSCJAG00000012334	KNOWN_BY_PROJECTION	protein_coding	MBOAT4	chromosome:C_jacchus3.2.1:13:1:117903854:1	28064990	28078823	R	membrane bound O-acyltransferase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:32311]
ENSCJAG00000007376	KNOWN_BY_PROJECTION	protein_coding	CARD6	chromosome:C_jacchus3.2.1:2:1:204313951:1	162586091	162599116	R	caspase recruitment domain family, member 6 [Source:HGNC Symbol;Acc:HGNC:16394]
ENSCJAG00000012319	KNOWN	protein_coding	LEPROTL1	chromosome:C_jacchus3.2.1:13:1:117903854:1	28032610	28072444	D	Leptin receptor overlapping transcript-like 1 isoform 1 {ECO:0000313|EMBL:JAB07611.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022580}  [Source:UniProtKB/TrEMBL;Acc:F7I639]
ENSCJAG00000004811	KNOWN	protein_coding	ENSCJAG00000004811	chromosome:C_jacchus3.2.1:5:1:159171411:1	22381308	22392531	D	U2 small nuclear ribonucleoprotein B {ECO:0000313|EMBL:JAB19008.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042616}  [Source:UniProtKB/TrEMBL;Acc:F7B808]
ENSCJAG00000003158	KNOWN_BY_PROJECTION	protein_coding	CCRN4L	chromosome:C_jacchus3.2.1:3:1:190850796:1	54009498	54031999	R	CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:14254]
ENSCJAG00000008183	KNOWN_BY_PROJECTION	protein_coding	CCDC15	chromosome:C_jacchus3.2.1:11:1:130397257:1	22783387	22881865	D	coiled-coil domain containing 15 [Source:HGNC Symbol;Acc:HGNC:25798]
ENSCJAG00000006902	KNOWN_BY_PROJECTION	protein_coding	C16orf92	chromosome:C_jacchus3.2.1:12:1:121768101:1	27840746	27842111	R	chromosome 16 open reading frame 92 [Source:HGNC Symbol;Acc:HGNC:26346]
ENSCJAG00000006890	KNOWN	protein_coding	FAM57B	chromosome:C_jacchus3.2.1:12:1:121768101:1	27834644	27841019	D	Protein FAM57B {ECO:0000313|EMBL:JAB14859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012775}  [Source:UniProtKB/TrEMBL;Acc:F6RF23]
ENSCJAG00000007411	KNOWN_BY_PROJECTION	protein_coding	DIS3L	chromosome:C_jacchus3.2.1:10:1:132174527:1	8702145	8747545	D	DIS3 like exosome 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:28698]
ENSCJAG00000008171	KNOWN	protein_coding	HEPACAM	chromosome:C_jacchus3.2.1:11:1:130397257:1	22742328	22757959	R	Hepatocyte cell adhesion molecule {ECO:0000313|EMBL:JAB23458.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015094}  [Source:UniProtKB/TrEMBL;Acc:F7EP19]
ENSCJAG00000008167	KNOWN_BY_PROJECTION	protein_coding	HEPN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	22740532	22742273	D	hepatocellular carcinoma, down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:34400]
ENSCJAG00000016035	KNOWN_BY_PROJECTION	protein_coding	TSNAXIP1	chromosome:C_jacchus3.2.1:20:1:44557958:1	21558297	21584260	D	translin-associated factor X interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:18586]
ENSCJAG00000018668	KNOWN	protein_coding	TARBP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	42389756	42395186	D	RISC-loading complex subunit TARBP2 {ECO:0000256|HAMAP-Rule:MF_03034}  [Source:UniProtKB/TrEMBL;Acc:F7IAT6]
ENSCJAG00000007341	KNOWN	protein_coding	PRKAA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	162485319	162676658	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013714}  [Source:UniProtKB/TrEMBL;Acc:F6XS74]
ENSCJAG00000012289	KNOWN	protein_coding	TMEM66	chromosome:C_jacchus3.2.1:13:1:117903854:1	27993786	28014522	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048737}  [Source:UniProtKB/TrEMBL;Acc:F6QVJ5]
ENSCJAG00000020465	NOVEL	protein_coding	ENSCJAG00000020465	chromosome:C_jacchus3.2.1:1:1:210400635:1	74082960	74165468	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038053}  [Source:UniProtKB/TrEMBL;Acc:F7HK61]
ENSCJAG00000003174	KNOWN	protein_coding	ELF2	chromosome:C_jacchus3.2.1:3:1:190850796:1	53907668	53997721	D	ETS-related transcription factor Elf-2 isoform 1 {ECO:0000313|EMBL:JAB06679.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005810}  [Source:UniProtKB/TrEMBL;Acc:F7HVP3]
ENSCJAG00000032851	KNOWN_BY_PROJECTION	protein_coding	CNOT7	chromosome:C_jacchus3.2.1:1:1:210400635:1	74057497	74058507	D	CCR4-NOT transcription complex, subunit 7 [Source:HGNC Symbol;Acc:HGNC:14101]
ENSCJAG00000019789	KNOWN	protein_coding	POU5F1	chromosome:C_jacchus3.2.1:4:1:171630274:1	31626192	31822630	R	Callithrix jacchus POU class 5 homeobox 1 (POU5F1), mRNA. [Source:RefSeq mRNA;Acc:NM_001265584]
ENSCJAG00000012275	KNOWN_BY_PROJECTION	protein_coding	DUSP4	chromosome:C_jacchus3.2.1:13:1:117903854:1	27211126	27226346	R	dual specificity phosphatase 4 [Source:HGNC Symbol;Acc:HGNC:3070]
ENSCJAG00000011016	NOVEL	pseudogene	ENSCJAG00000011016	chromosome:C_jacchus3.2.1:1:1:210400635:1	74021701	74022421	D	<no descrition>
ENSCJAG00000004746	KNOWN	protein_coding	KIF16B	chromosome:C_jacchus3.2.1:5:1:159171411:1	21910765	22211258	R	Kinesin-like protein KIF16B isoform 2 {ECO:0000313|EMBL:JAB21407.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008757}  [Source:UniProtKB/TrEMBL;Acc:F7HMA1]
ENSCJAG00000003167	KNOWN_BY_PROJECTION	protein_coding	MGARP	chromosome:C_jacchus3.2.1:3:1:190850796:1	53749835	53764873	D	mitochondria-localized glutamic acid-rich protein [Source:HGNC Symbol;Acc:HGNC:29969]
ENSCJAG00000003153	KNOWN	protein_coding	NDUFC1	chromosome:C_jacchus3.2.1:3:1:190850796:1	53723499	53732325	D	NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial {ECO:0000313|EMBL:JAB23139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005743}  [Source:UniProtKB/TrEMBL;Acc:F7IC73]
ENSCJAG00000019800	KNOWN	protein_coding	TCF19	chromosome:C_jacchus3.2.1:4:1:171630274:1	31620556	31625745	D	Transcription factor 19 {ECO:0000313|EMBL:BAK53233.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049560}  [Source:UniProtKB/TrEMBL;Acc:F6VEV7]
ENSCJAG00000012143	KNOWN_BY_PROJECTION	protein_coding	TNKS	chromosome:C_jacchus3.2.1:13:1:117903854:1	27005599	27199796	D	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase [Source:HGNC Symbol;Acc:HGNC:11941]
ENSCJAG00000018634	KNOWN	protein_coding	MAP3K12	chromosome:C_jacchus3.2.1:9:1:124281992:1	42370602	42388327	R	Mitogen-activated protein kinase kinase kinase {ECO:0000256|PIRNR:PIRNR038165}  [Source:UniProtKB/TrEMBL;Acc:F7IPT5]
ENSCJAG00000008130	KNOWN_BY_PROJECTION	protein_coding	ROBO4	chromosome:C_jacchus3.2.1:11:1:130397257:1	22693738	22725018	R	roundabout, axon guidance receptor, homolog 4 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17985]
ENSCJAG00000004719	KNOWN	protein_coding	MACROD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	21465141	21668620	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008576}  [Source:UniProtKB/TrEMBL;Acc:F7IS36]
ENSCJAG00000007321	KNOWN_BY_PROJECTION	protein_coding	C7	chromosome:C_jacchus3.2.1:2:1:204313951:1	162470036	162542171	R	complement component 7 [Source:HGNC Symbol;Acc:HGNC:1346]
ENSCJAG00000022756	KNOWN	protein_coding	PPP1R3B	chromosome:C_jacchus3.2.1:13:1:117903854:1	26619570	26630151	R	Protein phosphatase 1 regulatory subunit 3 {ECO:0000256|PIRNR:PIRNR038207}  [Source:UniProtKB/TrEMBL;Acc:F7FFM0]
ENSCJAG00000012140	NOVEL	pseudogene	ENSCJAG00000012140	chromosome:C_jacchus3.2.1:13:1:117903854:1	26836099	26836383	D	<no descrition>
ENSCJAG00000004735	KNOWN	protein_coding	FLRT3	chromosome:C_jacchus3.2.1:5:1:159171411:1	19917195	19930735	R	Leucine-rich repeat transmembrane protein FLRT3 {ECO:0000313|EMBL:JAB07723.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018500}  [Source:UniProtKB/TrEMBL;Acc:F7F477]
ENSCJAG00000004732	NOVEL	pseudogene	ENSCJAG00000004732	chromosome:C_jacchus3.2.1:5:1:159171411:1	19728967	19729459	D	<no descrition>
ENSCJAG00000012129	KNOWN	protein_coding	ERI1	chromosome:C_jacchus3.2.1:13:1:117903854:1	26476989	26506406	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022261}  [Source:UniProtKB/TrEMBL;Acc:F7C8Q7]
ENSCJAG00000007903	KNOWN	protein_coding	GADD45G	chromosome:C_jacchus3.2.1:1:1:210400635:1	73670416	73671966	D	Growth arrest and DNA damage-inducible protein GADD45 gamma {ECO:0000313|EMBL:JAB15306.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014683}  [Source:UniProtKB/TrEMBL;Acc:F7HV04]
ENSCJAG00000012125	KNOWN_BY_PROJECTION	protein_coding	MFHAS1	chromosome:C_jacchus3.2.1:13:1:117903854:1	26277265	26387639	R	malignant fibrous histiocytoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:16982]
ENSCJAG00000012122	NOVEL	protein_coding	ENSCJAG00000012122	chromosome:C_jacchus3.2.1:13:1:117903854:1	26216203	26217740	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052308}  [Source:UniProtKB/TrEMBL;Acc:F7HVK0]
ENSCJAG00000007883	KNOWN_BY_PROJECTION	protein_coding	SEMA4D	chromosome:C_jacchus3.2.1:1:1:210400635:1	73411744	73438097	R	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
ENSCJAG00000018590	NOVEL	protein_coding	ENSCJAG00000018590	chromosome:C_jacchus3.2.1:9:1:124281992:1	42342948	42371270	D	<no descrition>
ENSCJAG00000004701	KNOWN_BY_PROJECTION	protein_coding	SEL1L2	chromosome:C_jacchus3.2.1:5:1:159171411:1	19415542	19564738	R	sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
ENSCJAG00000012108	NOVEL	protein_coding	ENSCJAG00000012108	chromosome:C_jacchus3.2.1:13:1:117903854:1	25834331	25892344	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022236}  [Source:UniProtKB/TrEMBL;Acc:F7CQ17]
ENSCJAG00000007872	NOVEL	protein_coding	ENSCJAG00000007872	chromosome:C_jacchus3.2.1:1:1:210400635:1	73392871	73395914	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014584}  [Source:UniProtKB/TrEMBL;Acc:F7IBM9]
ENSCJAG00000012070	KNOWN	protein_coding	LONRF1	chromosome:C_jacchus3.2.1:13:1:117903854:1	25735104	25767534	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022211}  [Source:UniProtKB/TrEMBL;Acc:F6UNQ9]
ENSCJAG00000007353	KNOWN_BY_PROJECTION	protein_coding	MEGF11	chromosome:C_jacchus3.2.1:10:1:132174527:1	8275537	8658954	R	multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
ENSCJAG00000012068	NOVEL	protein_coding	ENSCJAG00000012068	chromosome:C_jacchus3.2.1:13:1:117903854:1	25523279	25560108	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022156}  [Source:UniProtKB/TrEMBL;Acc:F6XN51]
ENSCJAG00000012066	KNOWN_BY_PROJECTION	protein_coding	KIAA1456	chromosome:C_jacchus3.2.1:13:1:117903854:1	25501427	25504406	R	KIAA1456 [Source:HGNC Symbol;Acc:HGNC:26725]
ENSCJAG00000006244	KNOWN	protein_coding	ENSCJAG00000006244	chromosome:C_jacchus3.2.1:9:1:124281992:1	42324872	42330551	D	Proline-rich protein 13 isoform 1 {ECO:0000313|EMBL:JAB24930.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011472}  [Source:UniProtKB/TrEMBL;Acc:F7IQ44]
ENSCJAG00000012014	KNOWN_BY_PROJECTION	protein_coding	DLC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	25018705	25448744	D	DLC1 Rho GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:2897]
ENSCJAG00000018563	KNOWN_BY_PROJECTION	protein_coding	AMHR2	chromosome:C_jacchus3.2.1:9:1:124281992:1	42306859	42317991	D	anti-Mullerian hormone receptor, type II [Source:HGNC Symbol;Acc:HGNC:465]
ENSCJAG00000031917	NOVEL	protein_coding	ENSCJAG00000031917	chromosome:C_jacchus3.2.1:9:1:124281992:1	42281385	42282063	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042645}  [Source:UniProtKB/TrEMBL;Acc:F7A658]
ENSCJAG00000008040	KNOWN_BY_PROJECTION	protein_coding	ROBO3	chromosome:C_jacchus3.2.1:11:1:130397257:1	22691352	22707952	D	roundabout, axon guidance receptor, homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:13433]
ENSCJAG00000012013	KNOWN_BY_PROJECTION	protein_coding	C8orf48	chromosome:C_jacchus3.2.1:13:1:117903854:1	24953922	24954882	R	chromosome 8 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:26345]
ENSCJAG00000012002	NOVEL	protein_coding	ENSCJAG00000012002	chromosome:C_jacchus3.2.1:13:1:117903854:1	24281103	24281550	R	Small nuclear ribonucleoprotein F {ECO:0000256|PIRNR:PIRNR006609}  [Source:UniProtKB/TrEMBL;Acc:F7BPP4]
ENSCJAG00000011991	KNOWN_BY_PROJECTION	protein_coding	SGCZ	chromosome:C_jacchus3.2.1:13:1:117903854:1	24086456	24509919	D	sarcoglycan, zeta [Source:HGNC Symbol;Acc:HGNC:14075]
ENSCJAG00000016055	KNOWN_BY_PROJECTION	protein_coding	RANBP10	chromosome:C_jacchus3.2.1:20:1:44557958:1	21460896	21557862	R	RAN binding protein 10 [Source:HGNC Symbol;Acc:HGNC:29285]
ENSCJAG00000019801	KNOWN_BY_PROJECTION	protein_coding	CCHCR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	31602076	31619575	R	coiled-coil alpha-helical rod protein 1 [Source:HGNC Symbol;Acc:HGNC:13930]
ENSCJAG00000008036	KNOWN_BY_PROJECTION	protein_coding	ZNF729	chromosome:C_jacchus3.2.1:11:1:130397257:1	22599354	22614734	D	zinc finger protein 729 [Source:HGNC Symbol;Acc:HGNC:32464]
ENSCJAG00000019811	KNOWN_BY_PROJECTION	protein_coding	PSORS1C2	chromosome:C_jacchus3.2.1:4:1:171630274:1	31596952	31599005	R	psoriasis susceptibility 1 candidate 2 [Source:HGNC Symbol;Acc:HGNC:17199]
ENSCJAG00000011929	KNOWN	protein_coding	TUSC3	chromosome:C_jacchus3.2.1:13:1:117903854:1	22566781	22773427	R	Tumor suppressor candidate 3 isoform b {ECO:0000313|EMBL:JAB07887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022010}  [Source:UniProtKB/TrEMBL;Acc:F7C9S5]
ENSCJAG00000008028	KNOWN_BY_PROJECTION	protein_coding	MSANTD2	chromosome:C_jacchus3.2.1:11:1:130397257:1	22543252	22578159	R	Myb/SANT-like DNA-binding domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26266]
ENSCJAG00000008016	KNOWN	protein_coding	ESAM	chromosome:C_jacchus3.2.1:11:1:130397257:1	22530069	22539053	R	Endothelial cell-selective adhesion molecule {ECO:0000313|EMBL:JAB03450.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014819}  [Source:UniProtKB/TrEMBL;Acc:F7IBF4]
ENSCJAG00000007333	KNOWN	protein_coding	RAB11A	chromosome:C_jacchus3.2.1:10:1:132174527:1	8244061	8267071	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013681}  [Source:UniProtKB/TrEMBL;Acc:F7AX64]
ENSCJAG00000003095	KNOWN	protein_coding	NAA15	chromosome:C_jacchus3.2.1:3:1:190850796:1	53618518	53723203	R	N-alpha-acetyltransferase 15, NatA auxiliary subunit {ECO:0000313|EMBL:JAB09428.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005729}  [Source:UniProtKB/TrEMBL;Acc:F7IEJ0]
ENSCJAG00000034272	NOVEL	pseudogene	ENSCJAG00000034272	chromosome:C_jacchus3.2.1:10:1:132174527:1	8209346	8209666	R	<no descrition>
ENSCJAG00000007995	KNOWN_BY_PROJECTION	protein_coding	VSIG2	chromosome:C_jacchus3.2.1:11:1:130397257:1	22524342	22529166	R	V-set and immunoglobulin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:17149]
ENSCJAG00000019799	NOVEL	protein_coding	CDSN	chromosome:C_jacchus3.2.1:4:1:171630274:1	31572314	31577235	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036807}  [Source:UniProtKB/TrEMBL;Acc:F6U7J3]
ENSCJAG00000019806	NOVEL	protein_coding	ENSCJAG00000019806	chromosome:C_jacchus3.2.1:4:1:171630274:1	31571299	31600419	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036826}  [Source:UniProtKB/TrEMBL;Acc:F6TVZ9]
ENSCJAG00000019814	KNOWN_BY_PROJECTION	protein_coding	C6orf15	chromosome:C_jacchus3.2.1:4:1:171630274:1	31568414	31569553	R	chromosome 6 open reading frame 15 [Source:HGNC Symbol;Acc:HGNC:13927]
ENSCJAG00000011905	KNOWN_BY_PROJECTION	protein_coding	MSR1	chromosome:C_jacchus3.2.1:13:1:117903854:1	22121588	22214006	D	macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]
ENSCJAG00000004655	KNOWN	protein_coding	NDUFAF5	chromosome:C_jacchus3.2.1:5:1:159171411:1	19354409	19387804	D	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 isoform 1 {ECO:0000313|EMBL:JAB07663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008514}  [Source:UniProtKB/TrEMBL;Acc:F7HYW5]
ENSCJAG00000019816	KNOWN_BY_PROJECTION	protein_coding	MUC21	chromosome:C_jacchus3.2.1:4:1:171630274:1	31412443	31434878	D	mucin 21, cell surface associated [Source:HGNC Symbol;Acc:HGNC:21661]
ENSCJAG00000016078	KNOWN	protein_coding	ENSCJAG00000016078	chromosome:C_jacchus3.2.1:20:1:44557958:1	21402678	21455618	R	Glucose-fructose oxidoreductase domain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB09733.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029599}  [Source:UniProtKB/TrEMBL;Acc:F7I577]
ENSCJAG00000007806	KNOWN_BY_PROJECTION	protein_coding	SECISBP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	73350694	73390965	D	SECIS binding protein 2 [Source:HGNC Symbol;Acc:HGNC:30972]
ENSCJAG00000016084	KNOWN	protein_coding	C16ORF86	chromosome:C_jacchus3.2.1:20:1:44557958:1	21394895	21396820	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029607}; Uncharacterized protein C16orf86 {ECO:0000313|EMBL:JAB12113.1}  [Source:UniProtKB/TrEMBL;Acc:F7I0H5]
ENSCJAG00000003093	KNOWN	protein_coding	RAB33B	chromosome:C_jacchus3.2.1:3:1:190850796:1	53525007	53546802	R	Ras-related protein Rab-33B {ECO:0000313|EMBL:JAB03763.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005604}  [Source:UniProtKB/TrEMBL;Acc:F7I2X6]
ENSCJAG00000004640	KNOWN_BY_PROJECTION	protein_coding	ESF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	19293593	19352448	R	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:15898]
ENSCJAG00000011874	KNOWN_BY_PROJECTION	protein_coding	FGF20	chromosome:C_jacchus3.2.1:13:1:117903854:1	21344746	21353894	D	fibroblast growth factor 20 [Source:HGNC Symbol;Acc:HGNC:3677]
ENSCJAG00000018553	KNOWN	protein_coding	SP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	42261924	42290862	D	Transcription factor Sp1 isoform a {ECO:0000313|EMBL:JAB07861.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034443}  [Source:UniProtKB/TrEMBL;Acc:F7IQ29]
ENSCJAG00000018549	KNOWN_BY_PROJECTION	protein_coding	SP7	chromosome:C_jacchus3.2.1:9:1:124281992:1	42198749	42210271	R	Sp7 transcription factor [Source:HGNC Symbol;Acc:HGNC:17321]
ENSCJAG00000011856	KNOWN_BY_PROJECTION	protein_coding	MICU3	chromosome:C_jacchus3.2.1:13:1:117903854:1	21230370	21317562	R	mitochondrial calcium uptake family, member 3 [Source:HGNC Symbol;Acc:HGNC:27820]
ENSCJAG00000016088	KNOWN_BY_PROJECTION	protein_coding	ENKD1	chromosome:C_jacchus3.2.1:20:1:44557958:1	21391056	21394806	R	enkurin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25246]
ENSCJAG00000003081	KNOWN	protein_coding	SETD7	chromosome:C_jacchus3.2.1:3:1:190850796:1	53432781	53480431	D	Histone-lysine N-methyltransferase SETD7 {ECO:0000256|PIRNR:PIRNR037249}  [Source:UniProtKB/TrEMBL;Acc:F7I2X8]
ENSCJAG00000007984	NOVEL	protein_coding	ENSCJAG00000007984	chromosome:C_jacchus3.2.1:11:1:130397257:1	22514866	22524076	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014760}  [Source:UniProtKB/TrEMBL;Acc:F7IIN3]
ENSCJAG00000003073	KNOWN_BY_PROJECTION	protein_coding	MGST2	chromosome:C_jacchus3.2.1:3:1:190850796:1	53286815	53327477	R	microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:HGNC:7063]
ENSCJAG00000016098	KNOWN_BY_PROJECTION	protein_coding	PARD6A	chromosome:C_jacchus3.2.1:20:1:44557958:1	21389051	21390884	D	par-6 family cell polarity regulator alpha [Source:HGNC Symbol;Acc:HGNC:15943]
ENSCJAG00000007982	NOVEL	pseudogene	ENSCJAG00000007982	chromosome:C_jacchus3.2.1:11:1:130397257:1	22489054	22489638	D	<no descrition>
ENSCJAG00000011824	KNOWN_BY_PROJECTION	protein_coding	ZDHHC2	chromosome:C_jacchus3.2.1:13:1:117903854:1	21125317	21199063	R	zinc finger, DHHC-type containing 2 [Source:HGNC Symbol;Acc:HGNC:18469]
ENSCJAG00000016106	KNOWN_BY_PROJECTION	protein_coding	ACD	chromosome:C_jacchus3.2.1:20:1:44557958:1	21385750	21388490	R	adrenocortical dysplasia homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:25070]
ENSCJAG00000007792	KNOWN	protein_coding	CKS2	chromosome:C_jacchus3.2.1:1:1:210400635:1	73343261	73348762	D	Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}  [Source:UniProtKB/TrEMBL;Acc:F7HV56]
ENSCJAG00000007961	KNOWN	protein_coding	SPA17	chromosome:C_jacchus3.2.1:11:1:130397257:1	22446614	22467897	D	Sperm surface protein Sp17 {ECO:0000256|PIRNR:PIRNR016533}  [Source:UniProtKB/TrEMBL;Acc:F7IN74]
ENSCJAG00000011795	KNOWN	protein_coding	CNOT7	chromosome:C_jacchus3.2.1:13:1:117903854:1	21100620	21117651	D	CCR4-NOT transcription complex subunit 7 isoform 1 {ECO:0000313|EMBL:JAB08305.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021686}  [Source:UniProtKB/TrEMBL;Acc:F6QE98]
ENSCJAG00000007950	KNOWN_BY_PROJECTION	protein_coding	SIAE	chromosome:C_jacchus3.2.1:11:1:130397257:1	22408812	22448434	R	sialic acid acetylesterase [Source:HGNC Symbol;Acc:HGNC:18187]
ENSCJAG00000004599	KNOWN	protein_coding	TASP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	18972602	19216955	R	Threonine aspartase 1 {ECO:0000313|EMBL:JAB08227.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008390}  [Source:UniProtKB/TrEMBL;Acc:F7IPV5]
ENSCJAG00000007279	KNOWN_BY_PROJECTION	protein_coding	MROH2B	chromosome:C_jacchus3.2.1:2:1:204313951:1	162387484	162455581	D	maestro heat-like repeat family member 2B [Source:HGNC Symbol;Acc:HGNC:26857]
ENSCJAG00000007913	KNOWN_BY_PROJECTION	protein_coding	PANX3	chromosome:C_jacchus3.2.1:11:1:130397257:1	22383494	22391491	D	pannexin 3 [Source:HGNC Symbol;Acc:HGNC:20573]
ENSCJAG00000007900	NOVEL	pseudogene	ENSCJAG00000007900	chromosome:C_jacchus3.2.1:11:1:130397257:1	22308841	22309839	R	<no descrition>
ENSCJAG00000031986	NOVEL	pseudogene	ENSCJAG00000031986	chromosome:C_jacchus3.2.1:11:1:130397257:1	22296124	22296394	D	<no descrition>
ENSCJAG00000004583	KNOWN_BY_PROJECTION	protein_coding	ISM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	18869126	18899677	D	isthmin 1, angiogenesis inhibitor [Source:HGNC Symbol;Acc:HGNC:16213]
ENSCJAG00000011769	KNOWN	protein_coding	VPS37A	chromosome:C_jacchus3.2.1:13:1:117903854:1	21048553	21100588	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021640}; Vacuolar protein sorting-associated protein 37A isoform 1 {ECO:0000313|EMBL:JAB05653.1}  [Source:UniProtKB/TrEMBL;Acc:F6RK85]
ENSCJAG00000011207	KNOWN_BY_PROJECTION	protein_coding	SHC3	chromosome:C_jacchus3.2.1:1:1:210400635:1	73037257	73203981	R	SHC (Src homology 2 domain containing) transforming protein 3 [Source:HGNC Symbol;Acc:HGNC:18181]
ENSCJAG00000016125	KNOWN_BY_PROJECTION	protein_coding	RLTPR	chromosome:C_jacchus3.2.1:20:1:44557958:1	21372792	21385672	D	RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing [Source:HGNC Symbol;Acc:HGNC:27089]
ENSCJAG00000011197	KNOWN_BY_PROJECTION	protein_coding	S1PR3	chromosome:C_jacchus3.2.1:1:1:210400635:1	73015629	73029029	D	sphingosine-1-phosphate receptor 3 [Source:HGNC Symbol;Acc:HGNC:3167]
ENSCJAG00000011206	NOVEL	pseudogene	ENSCJAG00000011206	chromosome:C_jacchus3.2.1:1:1:210400635:1	73031555	73032214	D	<no descrition>
ENSCJAG00000011195	NOVEL	protein_coding	ENSCJAG00000011195	chromosome:C_jacchus3.2.1:1:1:210400635:1	72704490	72709443	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020618}  [Source:UniProtKB/TrEMBL;Acc:F7F4R9]
ENSCJAG00000011191	KNOWN_BY_PROJECTION	protein_coding	NXNL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	72602152	72611654	D	nucleoredoxin-like 2 [Source:HGNC Symbol;Acc:HGNC:30482]
ENSCJAG00000011725	KNOWN_BY_PROJECTION	protein_coding	MTMR7	chromosome:C_jacchus3.2.1:13:1:117903854:1	20945778	21048062	D	myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
ENSCJAG00000034391	NOVEL	protein_coding	ENSCJAG00000034391	chromosome:C_jacchus3.2.1:1:1:210400635:1	72113894	72114771	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044934}  [Source:UniProtKB/TrEMBL;Acc:F7GJ01]
ENSCJAG00000005728	KNOWN	protein_coding	NFIL3	chromosome:C_jacchus3.2.1:1:1:210400635:1	72028106	72041290	R	Nuclear factor interleukin-3-regulated protein {ECO:0000313|EMBL:JAB03189.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010501}  [Source:UniProtKB/TrEMBL;Acc:F7II13]
ENSCJAG00000004560	KNOWN	protein_coding	SPTLC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	18594357	18767942	D	Serine palmitoyltransferase 3 {ECO:0000313|EMBL:JAB09653.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042238}  [Source:UniProtKB/TrEMBL;Acc:F7ARU6]
ENSCJAG00000006874	NOVEL	protein_coding	ENSCJAG00000006874	chromosome:C_jacchus3.2.1:12:1:121768101:1	27783624	27799357	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042090}  [Source:UniProtKB/TrEMBL;Acc:F6R6I5]
ENSCJAG00000011720	NOVEL	protein_coding	ENSCJAG00000011720	chromosome:C_jacchus3.2.1:13:1:117903854:1	20856125	20859224	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021526}  [Source:UniProtKB/TrEMBL;Acc:F6PJ51]
ENSCJAG00000005695	KNOWN	protein_coding	AUH	chromosome:C_jacchus3.2.1:1:1:210400635:1	71829493	71981758	R	Methylglutaconyl-CoA hydratase, mitochondrial {ECO:0000313|EMBL:JAB04623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010488}  [Source:UniProtKB/TrEMBL;Acc:F7ISC3]
ENSCJAG00000016139	KNOWN	protein_coding	CTCF	chromosome:C_jacchus3.2.1:20:1:44557958:1	21286606	21362234	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029713}  [Source:UniProtKB/TrEMBL;Acc:F7IC32]
ENSCJAG00000019818	KNOWN_BY_PROJECTION	protein_coding	DPCR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	31364598	31376350	D	diffuse panbronchiolitis critical region 1 [Source:HGNC Symbol;Acc:HGNC:21666]
ENSCJAG00000021364	NOVEL	pseudogene	ENSCJAG00000021364	chromosome:C_jacchus3.2.1:5:1:159171411:1	18322974	18324022	D	<no descrition>
ENSCJAG00000019824	KNOWN	protein_coding	SFTA2	chromosome:C_jacchus3.2.1:4:1:171630274:1	31354175	31355295	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036849}  [Source:UniProtKB/TrEMBL;Acc:F6T9Z2]
ENSCJAG00000011665	KNOWN_BY_PROJECTION	protein_coding	SLC7A2	chromosome:C_jacchus3.2.1:13:1:117903854:1	20762510	20791303	R	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 [Source:HGNC Symbol;Acc:HGNC:11060]
ENSCJAG00000021361	KNOWN	protein_coding	BTBD3	chromosome:C_jacchus3.2.1:5:1:159171411:1	17431351	17468831	D	BTB/POZ domain-containing protein 3  [Source:UniProtKB/Swiss-Prot;Acc:F7ASZ0]
ENSCJAG00000007920	KNOWN	protein_coding	TBRG1	chromosome:C_jacchus3.2.1:11:1:130397257:1	22248227	22404124	D	Transforming growth factor beta regulator 1 {ECO:0000313|EMBL:JAB20981.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014694}  [Source:UniProtKB/TrEMBL;Acc:F7HPZ2]
ENSCJAG00000011634	KNOWN	protein_coding	PDGFRL	chromosome:C_jacchus3.2.1:13:1:117903854:1	20676916	20747325	R	Platelet-derived growth factor receptor-like protein {ECO:0000313|EMBL:JAB05092.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021408}  [Source:UniProtKB/TrEMBL;Acc:F6S969]
ENSCJAG00000016148	KNOWN_BY_PROJECTION	protein_coding	FAM65A	chromosome:C_jacchus3.2.1:20:1:44557958:1	21259527	21269773	D	family with sequence similarity 65, member A [Source:HGNC Symbol;Acc:HGNC:25836]
ENSCJAG00000021360	NOVEL	pseudogene	ENSCJAG00000021360	chromosome:C_jacchus3.2.1:5:1:159171411:1	16563764	16564200	R	<no descrition>
ENSCJAG00000016179	NOVEL	pseudogene	ENSCJAG00000016179	chromosome:C_jacchus3.2.1:20:1:44557958:1	21225297	21226152	D	<no descrition>
ENSCJAG00000007234	KNOWN_BY_PROJECTION	protein_coding	C6	chromosome:C_jacchus3.2.1:2:1:204313951:1	162199436	162322076	D	complement component 6 [Source:HGNC Symbol;Acc:HGNC:1339]
ENSCJAG00000007894	NOVEL	protein_coding	ENSCJAG00000007894	chromosome:C_jacchus3.2.1:11:1:130397257:1	22157670	22159735	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I4G8]
ENSCJAG00000016184	KNOWN_BY_PROJECTION	protein_coding	AGRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	21188139	21189386	R	agouti related neuropeptide [Source:HGNC Symbol;Acc:HGNC:330]
ENSCJAG00000011583	KNOWN_BY_PROJECTION	protein_coding	MTUS1	chromosome:C_jacchus3.2.1:13:1:117903854:1	20561751	20675279	D	microtubule associated tumor suppressor 1 [Source:HGNC Symbol;Acc:HGNC:29789]
ENSCJAG00000007232	KNOWN	protein_coding	PLCXD3	chromosome:C_jacchus3.2.1:2:1:204313951:1	161931106	162146176	D	PI-PLC X domain-containing protein 3 {ECO:0000313|EMBL:JAB16997.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013453}  [Source:UniProtKB/TrEMBL;Acc:F6W0T4]
ENSCJAG00000021357	KNOWN_BY_PROJECTION	protein_coding	JAG1	chromosome:C_jacchus3.2.1:5:1:159171411:1	16175637	16212137	R	jagged 1 [Source:HGNC Symbol;Acc:HGNC:6188]
ENSCJAG00000007199	NOVEL	protein_coding	ENSCJAG00000007199	chromosome:C_jacchus3.2.1:2:1:204313951:1	161587137	161720774	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013431}  [Source:UniProtKB/TrEMBL;Acc:F6WKQ9]
ENSCJAG00000001211	KNOWN	protein_coding	C5ORF51	chromosome:C_jacchus3.2.1:2:1:204313951:1	161530738	161549412	R	UPF0600 protein C5orf51 {ECO:0000313|EMBL:JAB05568.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002108}  [Source:UniProtKB/TrEMBL;Acc:F7ILA3]
ENSCJAG00000001220	KNOWN	protein_coding	FBXO4	chromosome:C_jacchus3.2.1:2:1:204313951:1	161509673	161525330	R	F-box only protein 4 isoform 1 {ECO:0000313|EMBL:JAB02120.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002148}  [Source:UniProtKB/TrEMBL;Acc:F7IIZ1]
ENSCJAG00000021356	KNOWN_BY_PROJECTION	protein_coding	SLX4IP	chromosome:C_jacchus3.2.1:5:1:159171411:1	15958105	16159396	D	SLX4 interacting protein [Source:HGNC Symbol;Acc:HGNC:16225]
ENSCJAG00000011564	KNOWN_BY_PROJECTION	protein_coding	FGL1	chromosome:C_jacchus3.2.1:13:1:117903854:1	20272440	20437309	D	fibrinogen-like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
ENSCJAG00000003065	KNOWN_BY_PROJECTION	protein_coding	MAML3	chromosome:C_jacchus3.2.1:3:1:190850796:1	53088257	53272596	D	mastermind-like 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:16272]
ENSCJAG00000003060	KNOWN	protein_coding	SCOC	chromosome:C_jacchus3.2.1:3:1:190850796:1	52561771	52701438	R	Short coiled-coil protein isoform 4 {ECO:0000313|EMBL:JAB08735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044126}  [Source:UniProtKB/TrEMBL;Acc:F7GB77]
ENSCJAG00000016190	KNOWN	protein_coding	ATP6V0D1	chromosome:C_jacchus3.2.1:20:1:44557958:1	21142780	21186329	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043703}; V-type proton ATPase subunit d 1 {ECO:0000313|EMBL:JAB09783.1}  [Source:UniProtKB/TrEMBL;Acc:F7HYB5]
ENSCJAG00000014105	KNOWN_BY_PROJECTION	protein_coding	PCM1	chromosome:C_jacchus3.2.1:13:1:117903854:1	20225608	20380827	R	pericentriolar material 1 [Source:HGNC Symbol;Acc:HGNC:8727]
ENSCJAG00000006846	KNOWN	protein_coding	PPP4C	chromosome:C_jacchus3.2.1:12:1:121768101:1	27768577	27778423	R	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F6S3M7]
ENSCJAG00000007209	KNOWN_BY_PROJECTION	protein_coding	DENND4A	chromosome:C_jacchus3.2.1:10:1:132174527:1	8039215	8159506	R	DENN/MADD domain containing 4A [Source:HGNC Symbol;Acc:HGNC:24321]
ENSCJAG00000016198	KNOWN	protein_coding	HSD11B2	chromosome:C_jacchus3.2.1:20:1:44557958:1	21136162	21142329	D	Corticosteroid 11-beta-dehydrogenase isozyme 2 {ECO:0000313|EMBL:JAB03893.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029832}  [Source:UniProtKB/TrEMBL;Acc:F7HKM0]
ENSCJAG00000016204	KNOWN_BY_PROJECTION	protein_coding	ZDHHC1	chromosome:C_jacchus3.2.1:20:1:44557958:1	21101422	21108904	R	zinc finger, DHHC-type containing 1 [Source:HGNC Symbol;Acc:HGNC:17916]
ENSCJAG00000021355	KNOWN	protein_coding	MKKS	chromosome:C_jacchus3.2.1:5:1:159171411:1	15929180	15957055	R	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin {ECO:0000313|EMBL:JAB02042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039746}  [Source:UniProtKB/TrEMBL;Acc:F7HEV6]
ENSCJAG00000003045	KNOWN	protein_coding	CLGN	chromosome:C_jacchus3.2.1:3:1:190850796:1	52500691	52555934	D	Calmegin {ECO:0000313|EMBL:JAB15692.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045971}  [Source:UniProtKB/TrEMBL;Acc:F6SEL4]
ENSCJAG00000016208	KNOWN_BY_PROJECTION	protein_coding	TPPP3	chromosome:C_jacchus3.2.1:20:1:44557958:1	21088050	21089350	R	tubulin polymerization-promoting protein family member 3 [Source:HGNC Symbol;Acc:HGNC:24162]
ENSCJAG00000033495	NOVEL	protein_coding	ENSCJAG00000033495	chromosome:C_jacchus3.2.1:2:1:204313951:1	161501783	161502451	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050591}  [Source:UniProtKB/TrEMBL;Acc:F7DQA2]
ENSCJAG00000001236	NOVEL	protein_coding	ENSCJAG00000001236	chromosome:C_jacchus3.2.1:2:1:204313951:1	161020276	161021426	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002155}  [Source:UniProtKB/TrEMBL;Acc:F7IGP4]
ENSCJAG00000016213	KNOWN_BY_PROJECTION	protein_coding	LRRC36	chromosome:C_jacchus3.2.1:20:1:44557958:1	21052605	21070521	D	leucine rich repeat containing 36 [Source:HGNC Symbol;Acc:HGNC:25615]
ENSCJAG00000035904	KNOWN_BY_PROJECTION	protein_coding	TBX6	chromosome:C_jacchus3.2.1:12:1:121768101:1	27761776	27768630	D	T-box 6 [Source:HGNC Symbol;Acc:HGNC:11605]
ENSCJAG00000014144	KNOWN	protein_coding	ASAH1	chromosome:C_jacchus3.2.1:13:1:117903854:1	20162496	20194063	D	Acid ceramidase isoform a preproprotein {ECO:0000313|EMBL:JAB06178.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026083}  [Source:UniProtKB/TrEMBL;Acc:F7IR48]
ENSCJAG00000016220	KNOWN_BY_PROJECTION	protein_coding	KCTD19	chromosome:C_jacchus3.2.1:20:1:44557958:1	20997286	21033809	R	potassium channel tetramerization domain containing 19 [Source:HGNC Symbol;Acc:HGNC:24753]
ENSCJAG00000007180	KNOWN_BY_PROJECTION	protein_coding	SLC24A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	7998317	8033226	D	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 [Source:HGNC Symbol;Acc:HGNC:10975]
ENSCJAG00000003032	KNOWN_BY_PROJECTION	protein_coding	ELMOD2	chromosome:C_jacchus3.2.1:3:1:190850796:1	52390200	52417981	R	ELMO/CED-12 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28111]
ENSCJAG00000001237	NOVEL	protein_coding	GHR	chromosome:C_jacchus3.2.1:2:1:204313951:1	160702891	160915914	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002192}  [Source:UniProtKB/TrEMBL;Acc:F7I9L6]
ENSCJAG00000001266	NOVEL	pseudogene	ENSCJAG00000001266	chromosome:C_jacchus3.2.1:2:1:204313951:1	160643517	160645485	D	<no descrition>
ENSCJAG00000006829	KNOWN	protein_coding	YPEL3	chromosome:C_jacchus3.2.1:12:1:121768101:1	27756363	27760706	D	Protein yippee-like {ECO:0000256|RuleBase:RU110713}  [Source:UniProtKB/TrEMBL;Acc:F6PZQ3]
ENSCJAG00000001260	KNOWN_BY_PROJECTION	protein_coding	CCDC152	chromosome:C_jacchus3.2.1:2:1:204313951:1	160612777	160685041	R	coiled-coil domain containing 152 [Source:HGNC Symbol;Acc:HGNC:34438]
ENSCJAG00000014197	NOVEL	protein_coding	ENSCJAG00000014197	chromosome:C_jacchus3.2.1:13:1:117903854:1	19965330	19966416	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026104}  [Source:UniProtKB/TrEMBL;Acc:F7IGQ4]
ENSCJAG00000014194	NOVEL	protein_coding	ENSCJAG00000014194	chromosome:C_jacchus3.2.1:13:1:117903854:1	20088164	20090278	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026099}  [Source:UniProtKB/TrEMBL;Acc:F7INR8]
ENSCJAG00000034380	NOVEL	pseudogene	ENSCJAG00000034380	chromosome:C_jacchus3.2.1:2:1:204313951:1	160391651	160392600	R	<no descrition>
ENSCJAG00000003017	KNOWN_BY_PROJECTION	protein_coding	UCP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	52372207	52381171	D	uncoupling protein 1 (mitochondrial, proton carrier) [Source:HGNC Symbol;Acc:HGNC:12517]
ENSCJAG00000001275	NOVEL	pseudogene	ENSCJAG00000001275	chromosome:C_jacchus3.2.1:2:1:204313951:1	160325430	160326104	D	<no descrition>
ENSCJAG00000021350	KNOWN	protein_coding	SNAP25	chromosome:C_jacchus3.2.1:5:1:159171411:1	15743195	15832447	D	Synaptosomal-associated protein {ECO:0000256|RuleBase:RU003496}  [Source:UniProtKB/TrEMBL;Acc:F7GP26]
ENSCJAG00000031326	NOVEL	protein_coding	ENSCJAG00000031326	chromosome:C_jacchus3.2.1:2:1:204313951:1	160319526	160320194	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049309}  [Source:UniProtKB/TrEMBL;Acc:F7AGR8]
ENSCJAG00000001269	KNOWN_BY_PROJECTION	protein_coding	ANXA2R	chromosome:C_jacchus3.2.1:2:1:204313951:1	160305606	160406373	D	annexin A2 receptor [Source:HGNC Symbol;Acc:HGNC:33463]
ENSCJAG00000001298	NOVEL	protein_coding	ENSCJAG00000001298	chromosome:C_jacchus3.2.1:2:1:204313951:1	160217246	160219582	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052288}  [Source:UniProtKB/TrEMBL;Acc:F7IGT3]
ENSCJAG00000001280	KNOWN	protein_coding	ZNF131	chromosome:C_jacchus3.2.1:2:1:204313951:1	160175443	160224356	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002266}; Zinc finger protein 131 {ECO:0000313|EMBL:JAB07461.1}  [Source:UniProtKB/TrEMBL;Acc:F7HQP8]
ENSCJAG00000014199	KNOWN_BY_PROJECTION	protein_coding	PSD3	chromosome:C_jacchus3.2.1:13:1:117903854:1	19319419	19809996	D	pleckstrin and Sec7 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:19093]
ENSCJAG00000021349	KNOWN_BY_PROJECTION	protein_coding	ANKEF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	15572813	15595174	D	ankyrin repeat and EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15803]
ENSCJAG00000014251	KNOWN_BY_PROJECTION	protein_coding	SH2D4A	chromosome:C_jacchus3.2.1:13:1:117903854:1	18853405	19028352	R	SH2 domain containing 4A [Source:HGNC Symbol;Acc:HGNC:26102]
ENSCJAG00000007118	KNOWN_BY_PROJECTION	protein_coding	VWA9	chromosome:C_jacchus3.2.1:10:1:132174527:1	7947003	7986693	R	von Willebrand factor A domain containing 9 [Source:HGNC Symbol;Acc:HGNC:25372]
ENSCJAG00000018507	KNOWN	protein_coding	AAAS	chromosome:C_jacchus3.2.1:9:1:124281992:1	42179048	42193619	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034415}  [Source:UniProtKB/TrEMBL;Acc:F7HNK3]
ENSCJAG00000021343	KNOWN	protein_coding	PAK7	chromosome:C_jacchus3.2.1:5:1:159171411:1	15116322	15413227	R	Serine/threonine-protein kinase PAK 7 {ECO:0000313|EMBL:JAB28233.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046708}  [Source:UniProtKB/TrEMBL;Acc:F7IAR7]
ENSCJAG00000035002	NOVEL	protein_coding	ENSCJAG00000035002	chromosome:C_jacchus3.2.1:3:1:190850796:1	52285037	52285860	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044243}  [Source:UniProtKB/TrEMBL;Acc:F7DKP0]
ENSCJAG00000014270	KNOWN_BY_PROJECTION	protein_coding	CSGALNACT1	chromosome:C_jacchus3.2.1:13:1:117903854:1	18564459	18939713	D	chondroitin sulfate N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24290]
ENSCJAG00000001300	KNOWN_BY_PROJECTION	protein_coding	NIM1K	chromosome:C_jacchus3.2.1:2:1:204313951:1	160077124	160112265	R	NIM1 serine/threonine protein kinase [Source:HGNC Symbol;Acc:HGNC:28646]
ENSCJAG00000021338	KNOWN	protein_coding	LAMP5	chromosome:C_jacchus3.2.1:5:1:159171411:1	15093521	15109788	D	Lysosome-associated membrane glycoprotein 5 isoform 1 {ECO:0000313|EMBL:JAB13086.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039724}  [Source:UniProtKB/TrEMBL;Acc:F7DCD2]
ENSCJAG00000006809	KNOWN_BY_PROJECTION	protein_coding	GDPD3	chromosome:C_jacchus3.2.1:12:1:121768101:1	27744984	27752441	D	glycerophosphodiester phosphodiesterase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28638]
ENSCJAG00000001303	KNOWN	protein_coding	HMGCS1	chromosome:C_jacchus3.2.1:2:1:204313951:1	160043915	160067118	D	Hydroxymethylglutaryl-CoA synthase, cytoplasmic {ECO:0000313|EMBL:JAB11201.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049590}  [Source:UniProtKB/TrEMBL;Acc:F6UT64]
ENSCJAG00000001321	KNOWN_BY_PROJECTION	protein_coding	CCL28	chromosome:C_jacchus3.2.1:2:1:204313951:1	159978109	160002803	D	chemokine (C-C motif) ligand 28 [Source:HGNC Symbol;Acc:HGNC:17700]
ENSCJAG00000001325	NOVEL	protein_coding	ENSCJAG00000001325	chromosome:C_jacchus3.2.1:2:1:204313951:1	159967199	159968400	R	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7IL53]
ENSCJAG00000018493	KNOWN	protein_coding	C12ORF10	chromosome:C_jacchus3.2.1:9:1:124281992:1	42171224	42178473	D	UPF0160 protein MYG1, mitochondrial {ECO:0000313|EMBL:JAB01979.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034308}  [Source:UniProtKB/TrEMBL;Acc:F6ZS88]
ENSCJAG00000014313	KNOWN	protein_coding	INTS10	chromosome:C_jacchus3.2.1:13:1:117903854:1	18459792	18493127	R	Integrator complex subunit 10 {ECO:0000313|EMBL:JAB08404.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026381}  [Source:UniProtKB/TrEMBL;Acc:F7I703]
ENSCJAG00000007084	KNOWN_BY_PROJECTION	protein_coding	PTPLAD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	7904147	7946400	D	protein tyrosine phosphatase-like A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24175]
ENSCJAG00000016239	KNOWN	protein_coding	PLEKHG4	chromosome:C_jacchus3.2.1:20:1:44557958:1	20987448	20997295	D	Puratrophin-1 isoform 1 {ECO:0000313|EMBL:JAB12866.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029929}  [Source:UniProtKB/TrEMBL;Acc:F7I9R4]
ENSCJAG00000018477	KNOWN	protein_coding	ENSCJAG00000018477	chromosome:C_jacchus3.2.1:9:1:124281992:1	42167054	42170985	D	Prefoldin subunit 5 isoform alpha {ECO:0000313|EMBL:JAB19413.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034285}  [Source:UniProtKB/TrEMBL;Acc:F7BB15]
ENSCJAG00000014346	KNOWN	protein_coding	LPL	chromosome:C_jacchus3.2.1:13:1:117903854:1	18343562	18371203	R	Lipoprotein lipase {ECO:0000313|EMBL:JAB12751.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026420}  [Source:UniProtKB/TrEMBL;Acc:F7HXL1]
ENSCJAG00000002968	KNOWN	protein_coding	TBC1D9	chromosome:C_jacchus3.2.1:3:1:190850796:1	52162127	52308915	D	TBC1 domain family member 9 {ECO:0000313|EMBL:JAB07755.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005460}  [Source:UniProtKB/TrEMBL;Acc:F7HY99]
ENSCJAG00000001330	KNOWN	protein_coding	C5ORF28	chromosome:C_jacchus3.2.1:2:1:204313951:1	159935785	159948970	D	Transmembrane protein C5orf28 {ECO:0000313|EMBL:JAB07486.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050815}  [Source:UniProtKB/TrEMBL;Acc:F7GME3]
ENSCJAG00000001333	KNOWN_BY_PROJECTION	protein_coding	C5orf34	chromosome:C_jacchus3.2.1:2:1:204313951:1	159873225	159902342	D	chromosome 5 open reading frame 34 [Source:HGNC Symbol;Acc:HGNC:24738]
ENSCJAG00000016263	KNOWN_BY_PROJECTION	protein_coding	SLC9A5	chromosome:C_jacchus3.2.1:20:1:44557958:1	20956548	20977882	D	solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 [Source:HGNC Symbol;Acc:HGNC:11078]
ENSCJAG00000002960	KNOWN	protein_coding	RNF150	chromosome:C_jacchus3.2.1:3:1:190850796:1	51761934	52050187	D	RING finger protein 150 {ECO:0000313|EMBL:JAB50834.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005361}  [Source:UniProtKB/TrEMBL;Acc:F7IEW3]
ENSCJAG00000014369	KNOWN	protein_coding	SLC18A1	chromosome:C_jacchus3.2.1:13:1:117903854:1	18125439	18157417	D	Chromaffin granule amine transporter isoform a {ECO:0000313|EMBL:JAB21885.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026503}  [Source:UniProtKB/TrEMBL;Acc:F7IL23]
ENSCJAG00000016281	KNOWN_BY_PROJECTION	protein_coding	FHOD1	chromosome:C_jacchus3.2.1:20:1:44557958:1	20936699	20955066	R	formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
ENSCJAG00000001340	KNOWN	protein_coding	PAIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	159831942	159862941	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045148}  [Source:UniProtKB/TrEMBL;Acc:F6S0M2]
ENSCJAG00000016332	KNOWN	protein_coding	TMEM208	chromosome:C_jacchus3.2.1:20:1:44557958:1	20934444	20936586	D	Transmembrane protein 208 {ECO:0000313|EMBL:JAB09867.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030079}  [Source:UniProtKB/TrEMBL;Acc:F6RHS7]
ENSCJAG00000006672	KNOWN	protein_coding	CORO1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	27676944	27682418	R	Coronin {ECO:0000256|RuleBase:RU280818}  [Source:UniProtKB/TrEMBL;Acc:F7H848]
ENSCJAG00000002287	NOVEL	pseudogene	ENSCJAG00000002287	chromosome:C_jacchus3.2.1:2:1:204313951:1	159714035	159714191	R	<no descrition>
ENSCJAG00000016350	NOVEL	protein_coding	ENSCJAG00000016350	chromosome:C_jacchus3.2.1:20:1:44557958:1	20917908	20934357	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030082}  [Source:UniProtKB/TrEMBL;Acc:F6RHK0]
ENSCJAG00000016352	NOVEL	protein_coding	ENSCJAG00000016352	chromosome:C_jacchus3.2.1:20:1:44557958:1	20915535	20917748	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030096}  [Source:UniProtKB/TrEMBL;Acc:F6RH04]
ENSCJAG00000006661	KNOWN	protein_coding	ENSCJAG00000006661	chromosome:C_jacchus3.2.1:12:1:121768101:1	27673240	27674802	D	BolA-like protein 2 {ECO:0000313|EMBL:JAB52732.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012305}  [Source:UniProtKB/TrEMBL;Acc:F7D8D9]
ENSCJAG00000001373	KNOWN	protein_coding	NNT	chromosome:C_jacchus3.2.1:2:1:204313951:1	159694323	159793547	R	NAD(P) transhydrogenase, mitochondrial {ECO:0000313|EMBL:JAB07263.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002489}  [Source:UniProtKB/TrEMBL;Acc:F7HV59]
ENSCJAG00000014436	KNOWN	protein_coding	ATP6V1B2	chromosome:C_jacchus3.2.1:13:1:117903854:1	18083893	18109750	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051109}; V-type proton ATPase subunit B, brain isoform {ECO:0000313|EMBL:JAB08753.1}  [Source:UniProtKB/TrEMBL;Acc:F6ZL40]
ENSCJAG00000018446	KNOWN_BY_PROJECTION	protein_coding	ESPL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	42135974	42163258	D	extra spindle pole bodies homolog 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:16856]
ENSCJAG00000021323	KNOWN	protein_coding	PLCB4	chromosome:C_jacchus3.2.1:5:1:159171411:1	14691321	15065921	D	Phosphoinositide phospholipase C {ECO:0000256|RuleBase:RU361133}  [Source:UniProtKB/TrEMBL;Acc:F7DT44]
ENSCJAG00000001413	KNOWN_BY_PROJECTION	protein_coding	FGF10	chromosome:C_jacchus3.2.1:2:1:204313951:1	158954359	159033800	D	fibroblast growth factor 10 [Source:HGNC Symbol;Acc:HGNC:3666]
ENSCJAG00000002931	KNOWN	protein_coding	ZNF330	chromosome:C_jacchus3.2.1:3:1:190850796:1	51652603	51666470	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005349}; Zinc finger protein 330 {ECO:0000313|EMBL:JAB10036.1}  [Source:UniProtKB/TrEMBL;Acc:F7IJI9]
ENSCJAG00000014459	KNOWN	protein_coding	LZTS1	chromosome:C_jacchus3.2.1:13:1:117903854:1	18043250	18049366	D	Leucine zipper putative tumor suppressor 1 {ECO:0000313|EMBL:JAB20140.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026620}  [Source:UniProtKB/TrEMBL;Acc:F7HZV7]
ENSCJAG00000020432	KNOWN_BY_PROJECTION	protein_coding	GFRA2	chromosome:C_jacchus3.2.1:13:1:117903854:1	16785956	16891330	R	GDNF family receptor alpha 2 [Source:HGNC Symbol;Acc:HGNC:4244]
ENSCJAG00000018442	KNOWN_BY_PROJECTION	protein_coding	MFSD5	chromosome:C_jacchus3.2.1:9:1:124281992:1	42119248	42121573	D	major facilitator superfamily domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28156]
ENSCJAG00000020429	KNOWN_BY_PROJECTION	protein_coding	DOK2	chromosome:C_jacchus3.2.1:13:1:117903854:1	16363330	16368226	D	docking protein 2, 56kDa [Source:HGNC Symbol;Acc:HGNC:2991]
ENSCJAG00000035906	KNOWN	protein_coding	SLX1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	27670125	27673657	R	Structure-specific endonuclease subunit SLX1 {ECO:0000256|HAMAP-Rule:MF_03100}  [Source:UniProtKB/TrEMBL;Acc:F7FQ80]
ENSCJAG00000016361	KNOWN_BY_PROJECTION	protein_coding	ELMO3	chromosome:C_jacchus3.2.1:20:1:44557958:1	20906055	20910536	D	engulfment and cell motility 3 [Source:HGNC Symbol;Acc:HGNC:17289]
ENSCJAG00000002909	KNOWN_BY_PROJECTION	protein_coding	IL15	chromosome:C_jacchus3.2.1:3:1:190850796:1	51088149	51213824	R	interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]
ENSCJAG00000020396	KNOWN	protein_coding	XPO7	chromosome:C_jacchus3.2.1:13:1:117903854:1	16254389	16354662	R	Exportin-7 {ECO:0000313|EMBL:JAB41229.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037957}  [Source:UniProtKB/TrEMBL;Acc:F6UP24]
ENSCJAG00000021317	KNOWN_BY_PROJECTION	protein_coding	PLCB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	14212557	14479319	D	phospholipase C, beta 1 (phosphoinositide-specific) [Source:HGNC Symbol;Acc:HGNC:15917]
ENSCJAG00000019826	KNOWN_BY_PROJECTION	protein_coding	VARS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	31330051	31349067	D	valyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:21642]
ENSCJAG00000020389	KNOWN	protein_coding	NPM2	chromosome:C_jacchus3.2.1:13:1:117903854:1	16213454	16224171	R	Nucleoplasmin-2 {ECO:0000313|EMBL:JAB13909.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037912}  [Source:UniProtKB/TrEMBL;Acc:F6WFJ6]
ENSCJAG00000020366	KNOWN_BY_PROJECTION	protein_coding	DMTN	chromosome:C_jacchus3.2.1:13:1:117903854:1	16162107	16177475	R	dematin actin binding protein [Source:HGNC Symbol;Acc:HGNC:3382]
ENSCJAG00000018408	KNOWN	protein_coding	RARG	chromosome:C_jacchus3.2.1:9:1:124281992:1	42073210	42099211	R	Retinoic acid receptor gamma isoform 1 {ECO:0000313|EMBL:JAB08839.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034173}  [Source:UniProtKB/TrEMBL;Acc:F6VV91]
ENSCJAG00000020359	KNOWN_BY_PROJECTION	protein_coding	FAM160B2	chromosome:C_jacchus3.2.1:13:1:117903854:1	16137612	16156258	R	family with sequence similarity 160, member B2 [Source:HGNC Symbol;Acc:HGNC:16492]
ENSCJAG00000020357	KNOWN_BY_PROJECTION	protein_coding	NUDT18	chromosome:C_jacchus3.2.1:13:1:117903854:1	16132476	16135025	D	nudix (nucleoside diphosphate linked moiety X)-type motif 18 [Source:HGNC Symbol;Acc:HGNC:26194]
ENSCJAG00000020347	KNOWN_BY_PROJECTION	protein_coding	HR	chromosome:C_jacchus3.2.1:13:1:117903854:1	16110419	16126351	D	hair growth associated [Source:HGNC Symbol;Acc:HGNC:5172]
ENSCJAG00000016403	KNOWN	protein_coding	E2F4	chromosome:C_jacchus3.2.1:20:1:44557958:1	20898280	20905844	D	Transcription factor E2F4 {ECO:0000313|EMBL:JAB06223.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030206}  [Source:UniProtKB/TrEMBL;Acc:F7BSL2]
ENSCJAG00000020336	KNOWN_BY_PROJECTION	protein_coding	FGF17	chromosome:C_jacchus3.2.1:13:1:117903854:1	16106109	16206707	R	fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]
ENSCJAG00000020323	KNOWN_BY_PROJECTION	protein_coding	REEP4	chromosome:C_jacchus3.2.1:13:1:117903854:1	16097726	16100673	D	receptor accessory protein 4 [Source:HGNC Symbol;Acc:HGNC:26176]
ENSCJAG00000020317	KNOWN	protein_coding	LGI3	chromosome:C_jacchus3.2.1:13:1:117903854:1	16081821	16090566	D	Leucine-rich repeat LGI family member 3 {ECO:0000313|EMBL:JAB17250.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037777}  [Source:UniProtKB/TrEMBL;Acc:F7CS47]
ENSCJAG00000021316	KNOWN	protein_coding	TMX4	chromosome:C_jacchus3.2.1:5:1:159171411:1	13584291	13625006	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039678}  [Source:UniProtKB/TrEMBL;Acc:F7FSP7]
ENSCJAG00000001419	KNOWN	protein_coding	MRPS30	chromosome:C_jacchus3.2.1:2:1:204313951:1	158523284	158530067	R	28S ribosomal protein S30, mitochondrial {ECO:0000313|EMBL:JAB13309.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002513}  [Source:UniProtKB/TrEMBL;Acc:F7INF2]
ENSCJAG00000020313	KNOWN	protein_coding	SFTPC	chromosome:C_jacchus3.2.1:13:1:117903854:1	16073514	16076913	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045966}  [Source:UniProtKB/TrEMBL;Acc:F6SF60]
ENSCJAG00000001424	KNOWN_BY_PROJECTION	protein_coding	HCN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	157730315	158117059	D	hyperpolarization activated cyclic nucleotide gated potassium channel 1 [Source:HGNC Symbol;Acc:HGNC:4845]
ENSCJAG00000006585	KNOWN	protein_coding	SULT1A3	chromosome:C_jacchus3.2.1:12:1:121768101:1	27651017	27673125	R	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F7GN42]
ENSCJAG00000016422	KNOWN_BY_PROJECTION	protein_coding	EXOC3L1	chromosome:C_jacchus3.2.1:20:1:44557958:1	20889406	20895811	R	exocyst complex component 3-like 1 [Source:HGNC Symbol;Acc:HGNC:27540]
ENSCJAG00000001432	KNOWN	protein_coding	EMB	chromosome:C_jacchus3.2.1:2:1:204313951:1	157214171	157271609	D	Embigin {ECO:0000313|EMBL:JAB27924.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002543}  [Source:UniProtKB/TrEMBL;Acc:F7IL38]
ENSCJAG00000001443	NOVEL	pseudogene	ENSCJAG00000001443	chromosome:C_jacchus3.2.1:2:1:204313951:1	157018028	157018373	R	<no descrition>
ENSCJAG00000016454	KNOWN	protein_coding	KIAA0895L	chromosome:C_jacchus3.2.1:20:1:44557958:1	20877446	20884091	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030299}; Uncharacterized protein KIAA0895-like {ECO:0000313|EMBL:JAB12364.1}  [Source:UniProtKB/TrEMBL;Acc:F7A8Z7]
ENSCJAG00000021311	KNOWN_BY_PROJECTION	protein_coding	HAO1	chromosome:C_jacchus3.2.1:5:1:159171411:1	13499224	13552400	R	hydroxyacid oxidase (glycolate oxidase) 1 [Source:HGNC Symbol;Acc:HGNC:4809]
ENSCJAG00000036404	NOVEL	protein_coding	ENSCJAG00000036404	chromosome:C_jacchus3.2.1:12:1:121768101:1	27638512	27644065	R	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F7I9K5]
ENSCJAG00000019860	KNOWN_BY_PROJECTION	protein_coding	DDR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	31303066	31323030	D	discoidin domain receptor tyrosine kinase 1 [Source:HGNC Symbol;Acc:HGNC:2730]
ENSCJAG00000020290	KNOWN_BY_PROJECTION	protein_coding	BMP1	chromosome:C_jacchus3.2.1:13:1:117903854:1	16004056	16072387	R	bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]
ENSCJAG00000016465	KNOWN_BY_PROJECTION	protein_coding	NOL3	chromosome:C_jacchus3.2.1:20:1:44557958:1	20873981	20877556	D	nucleolar protein 3 (apoptosis repressor with CARD domain) [Source:HGNC Symbol;Acc:HGNC:7869]
ENSCJAG00000021310	KNOWN	protein_coding	BMP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	12414033	12426146	D	Bone morphogenetic protein 2 preproprotein {ECO:0000313|EMBL:JAB10241.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039667}  [Source:UniProtKB/TrEMBL;Acc:F7G4N4]
ENSCJAG00000021309	NOVEL	pseudogene	ENSCJAG00000021309	chromosome:C_jacchus3.2.1:5:1:159171411:1	11743027	11743791	R	<no descrition>
ENSCJAG00000016495	KNOWN	protein_coding	FBXL8	chromosome:C_jacchus3.2.1:20:1:44557958:1	20857477	20859659	D	F-box/LRR-repeat protein 8 {ECO:0000313|EMBL:JAB10397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030348}  [Source:UniProtKB/TrEMBL;Acc:F6WVM2]
ENSCJAG00000016481	KNOWN	protein_coding	HSF4	chromosome:C_jacchus3.2.1:20:1:44557958:1	20861493	20866645	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030346}  [Source:UniProtKB/TrEMBL;Acc:F6WVP1]
ENSCJAG00000016502	KNOWN	protein_coding	TRADD	chromosome:C_jacchus3.2.1:20:1:44557958:1	20843385	20855693	R	Tumor necrosis factor receptor type 1-associated DEATH domain protein {ECO:0000313|EMBL:JAB09654.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030356}  [Source:UniProtKB/TrEMBL;Acc:F6WBD6]
ENSCJAG00000018387	KNOWN_BY_PROJECTION	protein_coding	ITGB7	chromosome:C_jacchus3.2.1:9:1:124281992:1	42052831	42069332	R	integrin, beta 7 [Source:HGNC Symbol;Acc:HGNC:6162]
ENSCJAG00000019870	NOVEL	protein_coding	ENSCJAG00000019870	chromosome:C_jacchus3.2.1:4:1:171630274:1	31222273	31222976	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036933}  [Source:UniProtKB/TrEMBL;Acc:F6QV75]
ENSCJAG00000019872	KNOWN	protein_coding	IER3	chromosome:C_jacchus3.2.1:4:1:171630274:1	31159875	31161041	R	Radiation-inducible immediate-early gene IEX-1 {ECO:0000313|EMBL:JAB13714.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036938}  [Source:UniProtKB/TrEMBL;Acc:F6QV53]
ENSCJAG00000021304	KNOWN_BY_PROJECTION	protein_coding	FERMT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	11708102	11757652	R	fermitin family member 1 [Source:HGNC Symbol;Acc:HGNC:15889]
ENSCJAG00000020286	KNOWN_BY_PROJECTION	protein_coding	PHYHIP	chromosome:C_jacchus3.2.1:13:1:117903854:1	15986628	15992932	D	phytanoyl-CoA 2-hydroxylase interacting protein [Source:HGNC Symbol;Acc:HGNC:16865]
ENSCJAG00000016504	KNOWN_BY_PROJECTION	protein_coding	B3GNT9	chromosome:C_jacchus3.2.1:20:1:44557958:1	20836750	20838168	R	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 [Source:HGNC Symbol;Acc:HGNC:28714]
ENSCJAG00000020278	KNOWN	protein_coding	POLR3D	chromosome:C_jacchus3.2.1:13:1:117903854:1	15962333	15967986	R	DNA-directed RNA polymerase III subunit RPC4 {ECO:0000313|EMBL:JAB13596.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037706}  [Source:UniProtKB/TrEMBL;Acc:F6X353]
ENSCJAG00000006577	KNOWN	protein_coding	CCDC101	chromosome:C_jacchus3.2.1:12:1:121768101:1	27602314	27638355	D	SAGA-associated factor 29 homolog {ECO:0000313|EMBL:JAB01675.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012147}  [Source:UniProtKB/TrEMBL;Acc:F7E6K6]
ENSCJAG00000021303	KNOWN_BY_PROJECTION	protein_coding	LRRN4	chromosome:C_jacchus3.2.1:5:1:159171411:1	11668150	11682467	R	leucine rich repeat neuronal 4 [Source:HGNC Symbol;Acc:HGNC:16208]
ENSCJAG00000001446	KNOWN	protein_coding	PARP8	chromosome:C_jacchus3.2.1:2:1:204313951:1	156821378	156999071	R	Poly [ADP-ribose] polymerase 8 isoform 1 {ECO:0000313|EMBL:JAB08175.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002633}  [Source:UniProtKB/TrEMBL;Acc:F7I4H9]
ENSCJAG00000016510	KNOWN	protein_coding	C16ORF70	chromosome:C_jacchus3.2.1:20:1:44557958:1	20797052	20836080	D	UPF0183 protein C16orf70 {ECO:0000313|EMBL:JAB07447.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030395}  [Source:UniProtKB/TrEMBL;Acc:F6UKG3]
ENSCJAG00000020263	KNOWN_BY_PROJECTION	protein_coding	PIWIL2	chromosome:C_jacchus3.2.1:13:1:117903854:1	15861769	15939422	R	piwi-like RNA-mediated gene silencing 2 [Source:HGNC Symbol;Acc:HGNC:17644]
ENSCJAG00000021302	KNOWN	protein_coding	CRLS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	11631839	11664576	D	Cardiolipin synthase isoform 1 {ECO:0000313|EMBL:JAB04453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039659}  [Source:UniProtKB/TrEMBL;Acc:F7G515]
ENSCJAG00000016528	KNOWN	protein_coding	ENSCJAG00000016528	chromosome:C_jacchus3.2.1:20:1:44557958:1	20715562	20787180	D	Core-binding factor subunit beta isoform 2 {ECO:0000313|EMBL:JAB10390.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030431}  [Source:UniProtKB/TrEMBL;Acc:F7BRE0]
ENSCJAG00000001485	KNOWN_BY_PROJECTION	protein_coding	RPS10-NUDT3	chromosome:C_jacchus3.2.1:2:1:204313951:1	156380895	156382400	R	RPS10-NUDT3 readthrough [Source:HGNC Symbol;Acc:HGNC:49181]
ENSCJAG00000020272	KNOWN_BY_PROJECTION	protein_coding	SLC39A14	chromosome:C_jacchus3.2.1:13:1:117903854:1	15794117	15850299	R	solute carrier family 39 (zinc transporter), member 14 [Source:HGNC Symbol;Acc:HGNC:20858]
ENSCJAG00000001490	KNOWN_BY_PROJECTION	protein_coding	ISL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	156276032	156287924	R	ISL LIM homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6132]
ENSCJAG00000002842	KNOWN	protein_coding	INPP4B	chromosome:C_jacchus3.2.1:3:1:190850796:1	50282202	50805109	D	Type II inositol 3,4-bisphosphate 4-phosphatase {ECO:0000313|EMBL:JAB25119.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005263}  [Source:UniProtKB/TrEMBL;Acc:F7HYF2]
ENSCJAG00000035190	KNOWN	protein_coding	PELO	chromosome:C_jacchus3.2.1:2:1:204313951:1	154864351	154879384	R	Protein pelota homolog {ECO:0000313|EMBL:JAB03288.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002698}  [Source:UniProtKB/TrEMBL;Acc:F7HXD2]
ENSCJAG00000016544	KNOWN_BY_PROJECTION	protein_coding	CES4A	chromosome:C_jacchus3.2.1:20:1:44557958:1	20677539	20695863	D	carboxylesterase 4A [Source:HGNC Symbol;Acc:HGNC:26741]
ENSCJAG00000001502	KNOWN_BY_PROJECTION	protein_coding	ITGA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	154715473	154818485	R	integrin, alpha 1 [Source:HGNC Symbol;Acc:HGNC:6134]
ENSCJAG00000020251	KNOWN_BY_PROJECTION	protein_coding	PPP3CC	chromosome:C_jacchus3.2.1:13:1:117903854:1	15672748	15776866	R	protein phosphatase 3, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:HGNC:9316]
ENSCJAG00000002839	NOVEL	protein_coding	ENSCJAG00000002839	chromosome:C_jacchus3.2.1:3:1:190850796:1	49536569	49537364	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052205}  [Source:UniProtKB/TrEMBL;Acc:F7ILJ9]
ENSCJAG00000016564	KNOWN_BY_PROJECTION	protein_coding	CES2	chromosome:C_jacchus3.2.1:20:1:44557958:1	20618360	20659156	D	carboxylesterase 2 [Source:HGNC Symbol;Acc:HGNC:1864]
ENSCJAG00000018381	KNOWN	protein_coding	ZNF740	chromosome:C_jacchus3.2.1:9:1:124281992:1	42040367	42052381	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034042}; Zinc finger protein 740 {ECO:0000313|EMBL:JAB04665.1}  [Source:UniProtKB/TrEMBL;Acc:F7ABG6]
ENSCJAG00000006572	KNOWN	protein_coding	NUPR1	chromosome:C_jacchus3.2.1:12:1:121768101:1	27583052	27584911	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012130}  [Source:UniProtKB/TrEMBL;Acc:F7EIW4]
ENSCJAG00000002831	KNOWN_BY_PROJECTION	protein_coding	USP38	chromosome:C_jacchus3.2.1:3:1:190850796:1	49507395	49548140	R	ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]
ENSCJAG00000006568	KNOWN_BY_PROJECTION	protein_coding	IL27	chromosome:C_jacchus3.2.1:12:1:121768101:1	27552019	27559227	R	interleukin 27 [Source:HGNC Symbol;Acc:HGNC:19157]
ENSCJAG00000006559	KNOWN_BY_PROJECTION	protein_coding	APOBR	chromosome:C_jacchus3.2.1:12:1:121768101:1	27548957	27550888	D	apolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]
ENSCJAG00000021298	KNOWN_BY_PROJECTION	protein_coding	MCM8	chromosome:C_jacchus3.2.1:5:1:159171411:1	11582777	11624084	D	minichromosome maintenance complex component 8 [Source:HGNC Symbol;Acc:HGNC:16147]
ENSCJAG00000020235	KNOWN	protein_coding	SORBS3	chromosome:C_jacchus3.2.1:13:1:117903854:1	15638828	15661711	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037639}  [Source:UniProtKB/TrEMBL;Acc:F7AX72]
ENSCJAG00000018351	KNOWN_BY_PROJECTION	protein_coding	CSAD	chromosome:C_jacchus3.2.1:9:1:124281992:1	42001571	42040524	R	cysteine sulfinic acid decarboxylase [Source:HGNC Symbol;Acc:HGNC:18966]
ENSCJAG00000018346	NOVEL	protein_coding	ENSCJAG00000018346	chromosome:C_jacchus3.2.1:9:1:124281992:1	41979432	41980765	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033963}  [Source:UniProtKB/TrEMBL;Acc:F6T142]
ENSCJAG00000006770	KNOWN_BY_PROJECTION	protein_coding	MAPK3	chromosome:C_jacchus3.2.1:12:1:121768101:1	27545674	27744409	D	mitogen-activated protein kinase 3 [Source:HGNC Symbol;Acc:HGNC:6877]
ENSCJAG00000006987	KNOWN	protein_coding	DPP8	chromosome:C_jacchus3.2.1:10:1:132174527:1	7816715	7890295	R	Dipeptidyl peptidase 8 isoform 2 {ECO:0000313|EMBL:JAB32811.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013094}  [Source:UniProtKB/TrEMBL;Acc:F6YJ41]
ENSCJAG00000020226	KNOWN_BY_PROJECTION	protein_coding	PDLIM2	chromosome:C_jacchus3.2.1:13:1:117903854:1	15617248	15635636	R	PDZ and LIM domain 2 (mystique) [Source:HGNC Symbol;Acc:HGNC:13992]
ENSCJAG00000016595	KNOWN_BY_PROJECTION	protein_coding	FAM96B	chromosome:C_jacchus3.2.1:20:1:44557958:1	20615037	20617386	R	family with sequence similarity 96, member B [Source:HGNC Symbol;Acc:HGNC:24261]
ENSCJAG00000016611	KNOWN	protein_coding	RRAD	chromosome:C_jacchus3.2.1:20:1:44557958:1	20604879	20608165	R	GTP-binding protein RAD {ECO:0000313|EMBL:JAB11921.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030568}  [Source:UniProtKB/TrEMBL;Acc:F6VQZ9]
ENSCJAG00000021296	KNOWN_BY_PROJECTION	protein_coding	TRMT6	chromosome:C_jacchus3.2.1:5:1:159171411:1	11569540	11577890	R	tRNA methyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:20900]
ENSCJAG00000020218	NOVEL	protein_coding	ENSCJAG00000020218	chromosome:C_jacchus3.2.1:13:1:117903854:1	15605570	15610436	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037591}  [Source:UniProtKB/TrEMBL;Acc:F6VEF2]
ENSCJAG00000002735	KNOWN	protein_coding	SMARCA5	chromosome:C_jacchus3.2.1:3:1:190850796:1	49150373	49192414	R	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 {ECO:0000313|EMBL:JAB03278.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005083}  [Source:UniProtKB/TrEMBL;Acc:F7HSM0]
ENSCJAG00000016616	KNOWN_BY_PROJECTION	protein_coding	CDH16	chromosome:C_jacchus3.2.1:20:1:44557958:1	20590024	20601319	R	cadherin 16, KSP-cadherin [Source:HGNC Symbol;Acc:HGNC:1755]
ENSCJAG00000020174	KNOWN_BY_PROJECTION	protein_coding	CCAR2	chromosome:C_jacchus3.2.1:13:1:117903854:1	15589139	15604935	R	cell cycle and apoptosis regulator 2 [Source:HGNC Symbol;Acc:HGNC:23360]
ENSCJAG00000021295	KNOWN_BY_PROJECTION	protein_coding	CHGB	chromosome:C_jacchus3.2.1:5:1:159171411:1	11549350	11563221	D	chromogranin B (secretogranin 1) [Source:HGNC Symbol;Acc:HGNC:1930]
ENSCJAG00000020166	KNOWN	protein_coding	BIN3	chromosome:C_jacchus3.2.1:13:1:117903854:1	15540771	15588971	D	Bridging integrator 3 {ECO:0000313|EMBL:JAB04028.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037514}  [Source:UniProtKB/TrEMBL;Acc:F6YFX8]
ENSCJAG00000006469	NOVEL	protein_coding	ENSCJAG00000006469	chromosome:C_jacchus3.2.1:12:1:121768101:1	27526108	27543368	R	Battenin {ECO:0000256|RuleBase:RU361113}  [Source:UniProtKB/TrEMBL;Acc:F7GNG9]
ENSCJAG00000016637	KNOWN	protein_coding	PDP2	chromosome:C_jacchus3.2.1:20:1:44557958:1	20562636	20720614	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030615}; [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial {ECO:0000313|EMBL:JAB04940.1}  [Source:UniProtKB/TrEMBL;Acc:F7C5P5]
ENSCJAG00000035385	NOVEL	pseudogene	ENSCJAG00000035385	chromosome:C_jacchus3.2.1:5:1:159171411:1	11541318	11542205	D	<no descrition>
ENSCJAG00000016641	KNOWN	protein_coding	CA7	chromosome:C_jacchus3.2.1:20:1:44557958:1	20525396	20535310	D	Carbonic anhydrase 7 isoform 1 {ECO:0000313|EMBL:JAB26057.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030645}  [Source:UniProtKB/TrEMBL;Acc:F7B798]
ENSCJAG00000020159	KNOWN	protein_coding	EGR3	chromosome:C_jacchus3.2.1:13:1:117903854:1	15516784	15522377	D	Early growth response protein 3 isoform 2 {ECO:0000313|EMBL:JAB30476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037502}  [Source:UniProtKB/TrEMBL;Acc:F6YY94]
ENSCJAG00000021294	KNOWN_BY_PROJECTION	protein_coding	C20orf196	chromosome:C_jacchus3.2.1:5:1:159171411:1	11434414	11500560	D	chromosome 20 open reading frame 196 [Source:HGNC Symbol;Acc:HGNC:26318]
ENSCJAG00000020158	KNOWN_BY_PROJECTION	protein_coding	PEBP4	chromosome:C_jacchus3.2.1:13:1:117903854:1	15271853	15498272	D	phosphatidylethanolamine-binding protein 4 [Source:HGNC Symbol;Acc:HGNC:28319]
ENSCJAG00000020143	KNOWN	protein_coding	RHOBTB2	chromosome:C_jacchus3.2.1:13:1:117903854:1	15184194	15214824	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037484}  [Source:UniProtKB/TrEMBL;Acc:F7AZ68]
ENSCJAG00000021287	KNOWN_BY_PROJECTION	protein_coding	GPCPD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	11218602	11286087	R	glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26957]
ENSCJAG00000020134	KNOWN_BY_PROJECTION	protein_coding	TNFRSF10D	chromosome:C_jacchus3.2.1:13:1:117903854:1	15115688	15132126	R	tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain [Source:HGNC Symbol;Acc:HGNC:11907]
ENSCJAG00000018319	KNOWN_BY_PROJECTION	protein_coding	SOAT2	chromosome:C_jacchus3.2.1:9:1:124281992:1	41948771	41972033	D	sterol O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:11178]
ENSCJAG00000021286	KNOWN_BY_PROJECTION	protein_coding	PROKR2	chromosome:C_jacchus3.2.1:5:1:159171411:1	11046121	11056206	R	prokineticin receptor 2 [Source:HGNC Symbol;Acc:HGNC:15836]
ENSCJAG00000020135	KNOWN_BY_PROJECTION	protein_coding	TNFRSF10A	chromosome:C_jacchus3.2.1:13:1:117903854:1	14937252	15180087	D	tumor necrosis factor receptor superfamily, member 10a [Source:HGNC Symbol;Acc:HGNC:11904]
ENSCJAG00000001514	KNOWN_BY_PROJECTION	protein_coding	ITGA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	154584612	154692176	R	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) [Source:HGNC Symbol;Acc:HGNC:6137]
ENSCJAG00000021280	KNOWN_BY_PROJECTION	protein_coding	CDS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	10893644	10958305	D	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 [Source:HGNC Symbol;Acc:HGNC:1801]
ENSCJAG00000002803	KNOWN_BY_PROJECTION	protein_coding	GAB1	chromosome:C_jacchus3.2.1:3:1:190850796:1	49121045	49364347	R	GRB2-associated binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4066]
ENSCJAG00000020123	KNOWN	protein_coding	CHMP7	chromosome:C_jacchus3.2.1:13:1:117903854:1	14902783	14916929	R	Charged multivesicular body protein 7 {ECO:0000313|EMBL:JAB01971.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037400}  [Source:UniProtKB/TrEMBL;Acc:F6W191]
ENSCJAG00000001568	KNOWN_BY_PROJECTION	protein_coding	MOCS2	chromosome:C_jacchus3.2.1:2:1:204313951:1	154565249	154577685	D	molybdenum cofactor synthesis 2 [Source:HGNC Symbol;Acc:HGNC:7193]
ENSCJAG00000016079	NOVEL	pseudogene	ENSCJAG00000016079	chromosome:C_jacchus3.2.1:2:1:204313951:1	154288206	154289494	D	<no descrition>
ENSCJAG00000001590	KNOWN	protein_coding	FST	chromosome:C_jacchus3.2.1:2:1:204313951:1	154196783	154201904	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002853}  [Source:UniProtKB/TrEMBL;Acc:F7I946]
ENSCJAG00000020118	KNOWN_BY_PROJECTION	protein_coding	R3HCC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	14883865	14893647	R	R3H domain and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:27329]
ENSCJAG00000018309	KNOWN_BY_PROJECTION	protein_coding	IGFBP6	chromosome:C_jacchus3.2.1:9:1:124281992:1	41943134	41947681	D	insulin-like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]
ENSCJAG00000002729	KNOWN_BY_PROJECTION	protein_coding	FREM3	chromosome:C_jacchus3.2.1:3:1:190850796:1	49025980	49134255	D	FRAS1 related extracellular matrix 3 [Source:HGNC Symbol;Acc:HGNC:25172]
ENSCJAG00000020107	KNOWN	protein_coding	LOXL2	chromosome:C_jacchus3.2.1:13:1:117903854:1	14785906	14880830	D	Lysyl oxidase homolog 2 {ECO:0000313|EMBL:JAB25889.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037386}  [Source:UniProtKB/TrEMBL;Acc:F6YGE3]
ENSCJAG00000002707	KNOWN_BY_PROJECTION	protein_coding	GYPA	chromosome:C_jacchus3.2.1:3:1:190850796:1	48806617	48832990	D	glycophorin A (MNS blood group) [Source:HGNC Symbol;Acc:HGNC:4702]
ENSCJAG00000020099	KNOWN	protein_coding	ENTPD4	chromosome:C_jacchus3.2.1:13:1:117903854:1	14735921	14761766	D	Ectonucleoside triphosphate diphosphohydrolase 4 isoform a {ECO:0000313|EMBL:JAB05981.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037368}  [Source:UniProtKB/TrEMBL;Acc:F6YYY9]
ENSCJAG00000019874	KNOWN	protein_coding	FLOT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	31147921	31159252	R	Flotillin-1 {ECO:0000313|EMBL:JAB11284.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050915}  [Source:UniProtKB/TrEMBL;Acc:F6U9D9]
ENSCJAG00000036975	NOVEL	pseudogene	ENSCJAG00000036975	chromosome:C_jacchus3.2.1:13:1:117903854:1	14623871	14625330	R	<no descrition>
ENSCJAG00000016658	KNOWN	protein_coding	NAE1	chromosome:C_jacchus3.2.1:20:1:44557958:1	20486094	20514368	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030806}  [Source:UniProtKB/TrEMBL;Acc:F7CJG0]
ENSCJAG00000020095	KNOWN	protein_coding	SLC25A37	chromosome:C_jacchus3.2.1:13:1:117903854:1	14623372	14667939	R	Mitoferrin-1 {ECO:0000313|EMBL:JAB06689.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037353}  [Source:UniProtKB/TrEMBL;Acc:F6ZGL1]
ENSCJAG00000018286	KNOWN	protein_coding	SPRYD3	chromosome:C_jacchus3.2.1:9:1:124281992:1	41912010	41926592	R	SPRY domain-containing protein 3 {ECO:0000313|EMBL:JAB02095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033881}  [Source:UniProtKB/TrEMBL;Acc:F6Q1A2]
ENSCJAG00000020094	NOVEL	pseudogene	ENSCJAG00000020094	chromosome:C_jacchus3.2.1:13:1:117903854:1	14620013	14622844	R	<no descrition>
ENSCJAG00000020093	NOVEL	pseudogene	ENSCJAG00000020093	chromosome:C_jacchus3.2.1:13:1:117903854:1	14583281	14584079	D	<no descrition>
ENSCJAG00000020092	KNOWN_BY_PROJECTION	protein_coding	NKX3-1	chromosome:C_jacchus3.2.1:13:1:117903854:1	14486148	14488499	D	NK3 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7838]
ENSCJAG00000020089	KNOWN_BY_PROJECTION	protein_coding	NKX2-6	chromosome:C_jacchus3.2.1:13:1:117903854:1	14457966	14461724	D	NK2 homeobox 6 [Source:HGNC Symbol;Acc:HGNC:32940]
ENSCJAG00000020087	NOVEL	protein_coding	ENSCJAG00000020087	chromosome:C_jacchus3.2.1:13:1:117903854:1	14356685	14357159	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037341}  [Source:UniProtKB/TrEMBL;Acc:F6ZZ54]
ENSCJAG00000020086	KNOWN_BY_PROJECTION	protein_coding	STC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	14288307	14301073	D	stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373]
ENSCJAG00000001607	KNOWN	protein_coding	NDUFS4	chromosome:C_jacchus3.2.1:2:1:204313951:1	154001775	154133577	R	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial {ECO:0000313|EMBL:JAB12486.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002884}  [Source:UniProtKB/TrEMBL;Acc:F7I6P6]
ENSCJAG00000002666	KNOWN	protein_coding	HHIP	chromosome:C_jacchus3.2.1:3:1:190850796:1	48252424	48341810	R	Hedgehog-interacting protein {ECO:0000313|EMBL:JAB10463.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004908}  [Source:UniProtKB/TrEMBL;Acc:F6UZU3]
ENSCJAG00000001623	KNOWN_BY_PROJECTION	protein_coding	ARL15	chromosome:C_jacchus3.2.1:2:1:204313951:1	153390240	153833009	D	ADP-ribosylation factor-like 15 [Source:HGNC Symbol;Acc:HGNC:25945]
ENSCJAG00000006951	KNOWN_BY_PROJECTION	protein_coding	IGDCC4	chromosome:C_jacchus3.2.1:10:1:132174527:1	7747443	7777631	R	immunoglobulin superfamily, DCC subclass, member 4 [Source:HGNC Symbol;Acc:HGNC:13770]
ENSCJAG00000018241	KNOWN_BY_PROJECTION	protein_coding	TNS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	41895865	41911275	D	tensin 2 [Source:HGNC Symbol;Acc:HGNC:19737]
ENSCJAG00000021278	KNOWN	protein_coding	PCNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	10881324	10886187	R	Proliferating cell nuclear antigen {ECO:0000256|RuleBase:RU000641}  [Source:UniProtKB/TrEMBL;Acc:F7GZC8]
ENSCJAG00000001635	KNOWN_BY_PROJECTION	protein_coding	SNX18	chromosome:C_jacchus3.2.1:2:1:204313951:1	153175527	153201563	R	sorting nexin 18 [Source:HGNC Symbol;Acc:HGNC:19245]
ENSCJAG00000002663	KNOWN_BY_PROJECTION	protein_coding	ANAPC10	chromosome:C_jacchus3.2.1:3:1:190850796:1	47852044	48001169	D	anaphase promoting complex subunit 10 [Source:HGNC Symbol;Acc:HGNC:24077]
ENSCJAG00000016748	KNOWN_BY_PROJECTION	protein_coding	CCDC79	chromosome:C_jacchus3.2.1:20:1:44557958:1	20430429	20484409	R	coiled-coil domain containing 79 [Source:HGNC Symbol;Acc:HGNC:26675]
ENSCJAG00000006940	KNOWN_BY_PROJECTION	protein_coding	IGDCC3	chromosome:C_jacchus3.2.1:10:1:132174527:1	7690487	7740138	R	immunoglobulin superfamily, DCC subclass, member 3 [Source:HGNC Symbol;Acc:HGNC:9700]
ENSCJAG00000020075	KNOWN_BY_PROJECTION	protein_coding	ADAM28	chromosome:C_jacchus3.2.1:13:1:117903854:1	13777683	13850157	R	ADAM metallopeptidase domain 28 [Source:HGNC Symbol;Acc:HGNC:206]
ENSCJAG00000006939	NOVEL	pseudogene	ENSCJAG00000006939	chromosome:C_jacchus3.2.1:10:1:132174527:1	7668724	7669217	R	<no descrition>
ENSCJAG00000001642	KNOWN_BY_PROJECTION	protein_coding	ESM1	chromosome:C_jacchus3.2.1:2:1:204313951:1	152736833	152744607	D	endothelial cell-specific molecule 1 [Source:HGNC Symbol;Acc:HGNC:3466]
ENSCJAG00000016811	NOVEL	pseudogene	ENSCJAG00000016811	chromosome:C_jacchus3.2.1:20:1:44557958:1	20406727	20407233	R	<no descrition>
ENSCJAG00000006929	KNOWN_BY_PROJECTION	protein_coding	PARP16	chromosome:C_jacchus3.2.1:10:1:132174527:1	7636836	7648760	R	poly (ADP-ribose) polymerase family, member 16 [Source:HGNC Symbol;Acc:HGNC:26040]
ENSCJAG00000006923	KNOWN_BY_PROJECTION	protein_coding	CILP	chromosome:C_jacchus3.2.1:10:1:132174527:1	7575316	7593342	R	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase [Source:HGNC Symbol;Acc:HGNC:1980]
ENSCJAG00000002636	KNOWN	protein_coding	ABCE1	chromosome:C_jacchus3.2.1:3:1:190850796:1	47817488	47852290	R	ATP-binding cassette sub-family E member 1 {ECO:0000313|EMBL:JAB07552.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043985}  [Source:UniProtKB/TrEMBL;Acc:F7INY7]
ENSCJAG00000021275	KNOWN_BY_PROJECTION	protein_coding	TMEM230	chromosome:C_jacchus3.2.1:5:1:159171411:1	10866311	10880804	R	transmembrane protein 230 [Source:HGNC Symbol;Acc:HGNC:15876]
ENSCJAG00000001646	KNOWN_BY_PROJECTION	protein_coding	GZMK	chromosome:C_jacchus3.2.1:2:1:204313951:1	152697588	152707675	R	granzyme K (granzyme 3; tryptase II) [Source:HGNC Symbol;Acc:HGNC:4711]
ENSCJAG00000021273	NOVEL	pseudogene	ENSCJAG00000021273	chromosome:C_jacchus3.2.1:5:1:159171411:1	10715652	10716144	D	<no descrition>
ENSCJAG00000001650	KNOWN_BY_PROJECTION	protein_coding	GZMA	chromosome:C_jacchus3.2.1:2:1:204313951:1	152624660	152631505	R	granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) [Source:HGNC Symbol;Acc:HGNC:4708]
ENSCJAG00000001669	KNOWN	protein_coding	GPX8	chromosome:C_jacchus3.2.1:2:1:204313951:1	152560007	152564814	R	Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}  [Source:UniProtKB/TrEMBL;Acc:F7ISV1]
ENSCJAG00000001654	KNOWN_BY_PROJECTION	protein_coding	CDC20B	chromosome:C_jacchus3.2.1:2:1:204313951:1	152551676	152621541	D	cell division cycle 20B [Source:HGNC Symbol;Acc:HGNC:24222]
ENSCJAG00000016771	KNOWN	protein_coding	DYNC1LI2	chromosome:C_jacchus3.2.1:20:1:44557958:1	20397079	20426974	R	Cytoplasmic dynein 1 light intermediate chain 2 {ECO:0000313|EMBL:JAB07561.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030924}  [Source:UniProtKB/TrEMBL;Acc:F6XE71]
ENSCJAG00000020062	KNOWN_BY_PROJECTION	protein_coding	ADAMDEC1	chromosome:C_jacchus3.2.1:13:1:117903854:1	13680408	13699924	R	ADAM-like, decysin 1 [Source:HGNC Symbol;Acc:HGNC:16299]
ENSCJAG00000001680	KNOWN	protein_coding	CCNO	chromosome:C_jacchus3.2.1:2:1:204313951:1	152493931	152496435	D	Cyclin-O {ECO:0000313|EMBL:JAB01769.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003008}  [Source:UniProtKB/TrEMBL;Acc:F7GQ59]
ENSCJAG00000001678	KNOWN_BY_PROJECTION	protein_coding	MCIDAS	chromosome:C_jacchus3.2.1:2:1:204313951:1	152500238	152508302	D	multiciliate differentiation and DNA synthesis associated cell cycle protein [Source:HGNC Symbol;Acc:HGNC:40050]
ENSCJAG00000016814	KNOWN_BY_PROJECTION	protein_coding	CMTM4	chromosome:C_jacchus3.2.1:20:1:44557958:1	20296151	20374440	R	CKLF-like MARVEL transmembrane domain containing 4 [Source:HGNC Symbol;Acc:HGNC:19175]
ENSCJAG00000020053	KNOWN_BY_PROJECTION	protein_coding	ADAM7	chromosome:C_jacchus3.2.1:13:1:117903854:1	13594082	13647657	R	ADAM metallopeptidase domain 7 [Source:HGNC Symbol;Acc:HGNC:214]
ENSCJAG00000016822	KNOWN	protein_coding	CMTM3	chromosome:C_jacchus3.2.1:20:1:44557958:1	20283446	20292862	D	CKLF-like MARVEL transmembrane domain-containing protein 3 {ECO:0000313|EMBL:JAB03211.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030955}  [Source:UniProtKB/TrEMBL;Acc:F6W762]
ENSCJAG00000020047	KNOWN_BY_PROJECTION	protein_coding	NEFM	chromosome:C_jacchus3.2.1:13:1:117903854:1	13177782	13182649	R	neurofilament, medium polypeptide [Source:HGNC Symbol;Acc:HGNC:7734]
ENSCJAG00000016827	KNOWN_BY_PROJECTION	protein_coding	CMTM2	chromosome:C_jacchus3.2.1:20:1:44557958:1	20258459	20269914	D	CKLF-like MARVEL transmembrane domain containing 2 [Source:HGNC Symbol;Acc:HGNC:19173]
ENSCJAG00000019900	KNOWN_BY_PROJECTION	protein_coding	MDC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	31117319	31138214	R	mediator of DNA-damage checkpoint 1 [Source:HGNC Symbol;Acc:HGNC:21163]
ENSCJAG00000020035	KNOWN_BY_PROJECTION	protein_coding	NEFL	chromosome:C_jacchus3.2.1:13:1:117903854:1	13145153	13150774	D	neurofilament, light polypeptide [Source:HGNC Symbol;Acc:HGNC:7739]
ENSCJAG00000006341	KNOWN	protein_coding	EIF3CL	chromosome:C_jacchus3.2.1:12:1:121768101:1	27485747	27509418	R	Eukaryotic translation initiation factor 3 subunit C {ECO:0000256|HAMAP-Rule:MF_03002}  [Source:UniProtKB/TrEMBL;Acc:F7GLL2]
ENSCJAG00000021258	KNOWN_BY_PROJECTION	protein_coding	SLC23A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	10630663	10745738	R	solute carrier family 23 (ascorbic acid transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10973]
ENSCJAG00000006870	KNOWN	protein_coding	CLPX	chromosome:C_jacchus3.2.1:10:1:132174527:1	7522494	7564838	R	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial {ECO:0000313|EMBL:JAB08970.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012807}  [Source:UniProtKB/TrEMBL;Acc:F6PY18]
ENSCJAG00000006867	NOVEL	protein_coding	ENSCJAG00000006867	chromosome:C_jacchus3.2.1:10:1:132174527:1	7497132	7499766	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012719}  [Source:UniProtKB/TrEMBL;Acc:F6SD92]
ENSCJAG00000035221	KNOWN	protein_coding	UBAP1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	7464496	7485793	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043469}  [Source:UniProtKB/TrEMBL;Acc:F7I5K7]
ENSCJAG00000006863	KNOWN_BY_PROJECTION	protein_coding	RASL12	chromosome:C_jacchus3.2.1:10:1:132174527:1	7418405	7434829	R	RAS-like, family 12 [Source:HGNC Symbol;Acc:HGNC:30289]
ENSCJAG00000006852	KNOWN_BY_PROJECTION	protein_coding	SLC51B	chromosome:C_jacchus3.2.1:10:1:132174527:1	7407841	7415563	D	solute carrier family 51, beta subunit [Source:HGNC Symbol;Acc:HGNC:29956]
ENSCJAG00000019904	KNOWN	protein_coding	NRM	chromosome:C_jacchus3.2.1:4:1:171630274:1	31105627	31109110	R	Nurim isoform 1 {ECO:0000313|EMBL:JAB02888.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037004}  [Source:UniProtKB/TrEMBL;Acc:F7A2F7]
ENSCJAG00000019986	KNOWN_BY_PROJECTION	protein_coding	DOCK5	chromosome:C_jacchus3.2.1:13:1:117903854:1	12707016	12930784	R	dedicator of cytokinesis 5 [Source:HGNC Symbol;Acc:HGNC:23476]
ENSCJAG00000016841	KNOWN_BY_PROJECTION	protein_coding	CMTM1	chromosome:C_jacchus3.2.1:20:1:44557958:1	20247359	20257656	D	CKLF-like MARVEL transmembrane domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19172]
ENSCJAG00000016854	KNOWN_BY_PROJECTION	protein_coding	CKLF	chromosome:C_jacchus3.2.1:20:1:44557958:1	20238803	20243836	D	chemokine-like factor [Source:HGNC Symbol;Acc:HGNC:13253]
ENSCJAG00000016863	KNOWN_BY_PROJECTION	protein_coding	TK2	chromosome:C_jacchus3.2.1:20:1:44557958:1	20194678	20229253	R	thymidine kinase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:11831]
ENSCJAG00000001692	KNOWN_BY_PROJECTION	protein_coding	DHX29	chromosome:C_jacchus3.2.1:2:1:204313951:1	152409274	152470334	D	DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Source:HGNC Symbol;Acc:HGNC:15815]
ENSCJAG00000021256	KNOWN	protein_coding	RASSF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	10557884	10600076	R	Ras association domain-containing protein 2 {ECO:0000313|EMBL:JAB04877.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039568}  [Source:UniProtKB/TrEMBL;Acc:F7HF71]
ENSCJAG00000019984	KNOWN	protein_coding	GNRH1	chromosome:C_jacchus3.2.1:13:1:117903854:1	12697151	12701716	D	Gonadoliberin {ECO:0000256|RuleBase:RU000635}  [Source:UniProtKB/TrEMBL;Acc:F7AIJ5]
ENSCJAG00000021254	NOVEL	protein_coding	PRND	chromosome:C_jacchus3.2.1:5:1:159171411:1	10490484	10494230	D	Doppel protein Dpl {ECO:0000313|EMBL:CAL59572.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039562}  [Source:UniProtKB/TrEMBL;Acc:A2BDJ3]
ENSCJAG00000021255	NOVEL	pseudogene	ENSCJAG00000021255	chromosome:C_jacchus3.2.1:5:1:159171411:1	10509089	10509841	D	<no descrition>
ENSCJAG00000031773	NOVEL	protein_coding	ENSCJAG00000031773	chromosome:C_jacchus3.2.1:5:1:159171411:1	10484174	10485421	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044697}  [Source:UniProtKB/TrEMBL;Acc:F7HBJ0]
ENSCJAG00000016872	KNOWN_BY_PROJECTION	protein_coding	BEAN1	chromosome:C_jacchus3.2.1:20:1:44557958:1	20166934	20182226	D	brain expressed, associated with NEDD4, 1 [Source:HGNC Symbol;Acc:HGNC:24160]
ENSCJAG00000019969	KNOWN	protein_coding	KCTD9	chromosome:C_jacchus3.2.1:13:1:117903854:1	12665454	12693589	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037166}  [Source:UniProtKB/TrEMBL;Acc:F7B1A2]
ENSCJAG00000006848	KNOWN_BY_PROJECTION	protein_coding	MTFMT	chromosome:C_jacchus3.2.1:10:1:132174527:1	7369266	7396844	R	mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:HGNC:29666]
ENSCJAG00000021253	NOVEL	protein_coding	PRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	10455863	10473024	D	Major prion protein {ECO:0000256|RuleBase:RU003882}  [Source:UniProtKB/TrEMBL;Acc:F7HF87]
ENSCJAG00000006337	NOVEL	pseudogene	ENSCJAG00000006337	chromosome:C_jacchus3.2.1:12:1:121768101:1	27458392	27458768	R	<no descrition>
ENSCJAG00000021251	KNOWN_BY_PROJECTION	protein_coding	ADRA1D	chromosome:C_jacchus3.2.1:5:1:159171411:1	10044074	10225285	R	adrenoceptor alpha 1D [Source:HGNC Symbol;Acc:HGNC:280]
ENSCJAG00000019906	KNOWN	protein_coding	PPP1R18	chromosome:C_jacchus3.2.1:4:1:171630274:1	31094329	31105466	R	Phostensin {ECO:0000313|EMBL:JAB01729.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037018}  [Source:UniProtKB/TrEMBL;Acc:F6ZK17]
ENSCJAG00000005282	KNOWN	protein_coding	SPG21	chromosome:C_jacchus3.2.1:10:1:132174527:1	7321858	7349695	R	Maspardin isoform b {ECO:0000313|EMBL:JAB37439.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015236}  [Source:UniProtKB/TrEMBL;Acc:F7GPQ2]
ENSCJAG00000002563	KNOWN	protein_coding	OTUD4	chromosome:C_jacchus3.2.1:3:1:190850796:1	47764953	47819012	D	OTU domain-containing protein 4 isoform 3 {ECO:0000313|EMBL:JAB07435.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004766}  [Source:UniProtKB/TrEMBL;Acc:F7B4E3]
ENSCJAG00000019958	KNOWN_BY_PROJECTION	protein_coding	CDCA2	chromosome:C_jacchus3.2.1:13:1:117903854:1	12617459	12664863	R	cell division cycle associated 2 [Source:HGNC Symbol;Acc:HGNC:14623]
ENSCJAG00000016885	KNOWN_BY_PROJECTION	protein_coding	CDH5	chromosome:C_jacchus3.2.1:20:1:44557958:1	20051288	20090069	D	cadherin 5, type 2 (vascular endothelium) [Source:HGNC Symbol;Acc:HGNC:1764]
ENSCJAG00000031989	KNOWN_BY_PROJECTION	protein_coding	ANKDD1A	chromosome:C_jacchus3.2.1:10:1:132174527:1	7278656	7323034	D	ankyrin repeat and death domain containing 1A [Source:HGNC Symbol;Acc:HGNC:28002]
ENSCJAG00000005280	NOVEL	protein_coding	ENSCJAG00000005280	chromosome:C_jacchus3.2.1:10:1:132174527:1	7269640	7271830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046341}  [Source:UniProtKB/TrEMBL;Acc:F6WZZ8]
ENSCJAG00000002557	NOVEL	pseudogene	ENSCJAG00000002557	chromosome:C_jacchus3.2.1:3:1:190850796:1	47721073	47722170	D	<no descrition>
ENSCJAG00000033960	KNOWN	protein_coding	PLEKHO2	chromosome:C_jacchus3.2.1:10:1:132174527:1	7184773	7212379	D	Pleckstrin homology domain-containing family O member 2 isoform 1 {ECO:0000313|EMBL:JAB05790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009646}  [Source:UniProtKB/TrEMBL;Acc:F7FZ39]
ENSCJAG00000019921	KNOWN_BY_PROJECTION	protein_coding	EBF2	chromosome:C_jacchus3.2.1:13:1:117903854:1	12127472	12333484	D	early B-cell factor 2 [Source:HGNC Symbol;Acc:HGNC:19090]
ENSCJAG00000005200	NOVEL	protein_coding	ENSCJAG00000005200	chromosome:C_jacchus3.2.1:10:1:132174527:1	7069403	7078093	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009513}  [Source:UniProtKB/TrEMBL;Acc:F7DM23]
ENSCJAG00000002542	KNOWN	protein_coding	SMAD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	47386167	47464910	R	Mothers against decapentaplegic homolog 1 {ECO:0000313|EMBL:JAB04090.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010974}  [Source:UniProtKB/TrEMBL;Acc:F7ICT9]
ENSCJAG00000021237	KNOWN	protein_coding	SMOX	chromosome:C_jacchus3.2.1:5:1:159171411:1	9974089	10017299	D	Spermine oxidase isoform 1 {ECO:0000313|EMBL:JAB01851.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039556}  [Source:UniProtKB/TrEMBL;Acc:F7CTZ4]
ENSCJAG00000002535	NOVEL	protein_coding	ENSCJAG00000002535	chromosome:C_jacchus3.2.1:3:1:190850796:1	47306604	47308469	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004608}  [Source:UniProtKB/TrEMBL;Acc:F6YMG7]
ENSCJAG00000002540	NOVEL	pseudogene	ENSCJAG00000002540	chromosome:C_jacchus3.2.1:3:1:190850796:1	47336864	47337744	R	<no descrition>
ENSCJAG00000021226	KNOWN	protein_coding	RNF24	chromosome:C_jacchus3.2.1:5:1:159171411:1	9762736	9844466	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039527}  [Source:UniProtKB/TrEMBL;Acc:F7DDK8]
ENSCJAG00000019902	KNOWN	protein_coding	PPP2R2A	chromosome:C_jacchus3.2.1:13:1:117903854:1	11810822	11885406	R	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256|RuleBase:RU331113}  [Source:UniProtKB/TrEMBL;Acc:F6Z1R8]
ENSCJAG00000001773	KNOWN	protein_coding	SKIV2L2	chromosome:C_jacchus3.2.1:2:1:204313951:1	152296818	152409231	R	Superkiller viralicidic activity 2-like 2 {ECO:0000313|EMBL:JAB09475.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003367}  [Source:UniProtKB/TrEMBL;Acc:F7DVK9]
ENSCJAG00000016939	KNOWN	protein_coding	CDH11	chromosome:C_jacchus3.2.1:20:1:44557958:1	18598032	18774566	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043007}  [Source:UniProtKB/TrEMBL;Acc:F7HYU3]
ENSCJAG00000019884	KNOWN_BY_PROJECTION	protein_coding	BNIP3L	chromosome:C_jacchus3.2.1:13:1:117903854:1	11777850	11802778	R	BCL2/adenovirus E1B 19kDa interacting protein 3-like [Source:HGNC Symbol;Acc:HGNC:1085]
ENSCJAG00000001879	KNOWN_BY_PROJECTION	protein_coding	PPAP2A	chromosome:C_jacchus3.2.1:2:1:204313951:1	152199752	152297542	D	phosphatidic acid phosphatase type 2A [Source:HGNC Symbol;Acc:HGNC:9228]
ENSCJAG00000018176	KNOWN_BY_PROJECTION	protein_coding	EIF4B	chromosome:C_jacchus3.2.1:9:1:124281992:1	41851459	41888445	D	eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:HGNC:3285]
ENSCJAG00000021217	KNOWN_BY_PROJECTION	protein_coding	PANK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	9714077	9753361	D	pantothenate kinase 2 [Source:HGNC Symbol;Acc:HGNC:15894]
ENSCJAG00000019873	KNOWN	protein_coding	ADRA1A	chromosome:C_jacchus3.2.1:13:1:117903854:1	11353578	11459291	D	Alpha-1A adrenergic receptor isoform 1 {ECO:0000313|EMBL:JAB21395.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036959}  [Source:UniProtKB/TrEMBL;Acc:F6QIG0]
ENSCJAG00000019866	KNOWN	protein_coding	STMN4	chromosome:C_jacchus3.2.1:13:1:117903854:1	11028826	11050372	D	Stathmin-4 {ECO:0000313|EMBL:JAB22895.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036935}  [Source:UniProtKB/TrEMBL;Acc:F6QV59]
ENSCJAG00000021211	KNOWN_BY_PROJECTION	protein_coding	MAVS	chromosome:C_jacchus3.2.1:5:1:159171411:1	9676201	9688407	D	mitochondrial antiviral signaling protein [Source:HGNC Symbol;Acc:HGNC:29233]
ENSCJAG00000021209	KNOWN	protein_coding	AP5S1	chromosome:C_jacchus3.2.1:5:1:159171411:1	9645182	9649102	D	AP-5 complex subunit sigma-1 {ECO:0000313|EMBL:JAB01839.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039493}  [Source:UniProtKB/TrEMBL;Acc:F7FDR2]
ENSCJAG00000019863	KNOWN_BY_PROJECTION	protein_coding	TRIM35	chromosome:C_jacchus3.2.1:13:1:117903854:1	10983949	10999822	D	tripartite motif containing 35 [Source:HGNC Symbol;Acc:HGNC:16285]
ENSCJAG00000019914	KNOWN	protein_coding	DHX16	chromosome:C_jacchus3.2.1:4:1:171630274:1	31069788	31082002	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037035}  [Source:UniProtKB/TrEMBL;Acc:F6Z1Q6]
ENSCJAG00000017003	KNOWN	protein_coding	CDH8	chromosome:C_jacchus3.2.1:20:1:44557958:1	15530220	15914000	R	Cadherin-8 preproprotein {ECO:0000313|EMBL:JAB20176.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031307}  [Source:UniProtKB/TrEMBL;Acc:F7I0Z5]
ENSCJAG00000002525	KNOWN	protein_coding	MMAA	chromosome:C_jacchus3.2.1:3:1:190850796:1	47274206	47313526	R	Methylmalonic aciduria type A protein, mitochondrial {ECO:0000313|EMBL:JAB07587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045526}  [Source:UniProtKB/TrEMBL;Acc:F6TFA6]
ENSCJAG00000005156	KNOWN	protein_coding	OAZ2	chromosome:C_jacchus3.2.1:10:1:132174527:1	7018123	7021756	R	Callithrix jacchus ornithine decarboxylase antizyme 2 (OAZ2), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001301337]
ENSCJAG00000002521	KNOWN_BY_PROJECTION	protein_coding	C4orf51	chromosome:C_jacchus3.2.1:3:1:190850796:1	47202629	47252560	R	chromosome 4 open reading frame 51 [Source:HGNC Symbol;Acc:HGNC:37264]
ENSCJAG00000011234	KNOWN	protein_coding	GOT2	chromosome:C_jacchus3.2.1:20:1:44557958:1	12728665	12756214	R	Aspartate aminotransferase {ECO:0000256|RuleBase:RU000480}  [Source:UniProtKB/TrEMBL;Acc:F7H699]
ENSCJAG00000018165	NOVEL	protein_coding	ENSCJAG00000018165	chromosome:C_jacchus3.2.1:9:1:124281992:1	41797515	41801869	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033609}  [Source:UniProtKB/TrEMBL;Acc:F6RWB1]
ENSCJAG00000019574	KNOWN_BY_PROJECTION	protein_coding	PTK2B	chromosome:C_jacchus3.2.1:13:1:117903854:1	10828652	10965518	R	protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
ENSCJAG00000001907	KNOWN	protein_coding	SLC38A9	chromosome:C_jacchus3.2.1:2:1:204313951:1	152012469	152080046	D	Putative sodium-coupled neutral amino acid transporter 9 isoform 1 {ECO:0000313|EMBL:JAB08398.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003510}  [Source:UniProtKB/TrEMBL;Acc:F7F127]
ENSCJAG00000021199	KNOWN_BY_PROJECTION	protein_coding	CDC25B	chromosome:C_jacchus3.2.1:5:1:159171411:1	9604765	9630767	D	cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
ENSCJAG00000019690	KNOWN_BY_PROJECTION	protein_coding	CHRNA2	chromosome:C_jacchus3.2.1:13:1:117903854:1	10807257	10827544	D	cholinergic receptor, nicotinic, alpha 2 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1956]
ENSCJAG00000019923	KNOWN_BY_PROJECTION	protein_coding	C6orf136	chromosome:C_jacchus3.2.1:4:1:171630274:1	31064994	31069876	D	chromosome 6 open reading frame 136 [Source:HGNC Symbol;Acc:HGNC:21301]
ENSCJAG00000006251	KNOWN	protein_coding	ATXN2L	chromosome:C_jacchus3.2.1:12:1:121768101:1	27430140	27444244	R	Ataxin-2-like protein isoform C {ECO:0000313|EMBL:JAB11122.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011667}  [Source:UniProtKB/TrEMBL;Acc:F7HD84]
ENSCJAG00000019677	KNOWN	protein_coding	EPHX2	chromosome:C_jacchus3.2.1:13:1:117903854:1	10744744	10797372	R	Bifunctional epoxide hydrolase 2 isoform a {ECO:0000313|EMBL:JAB18875.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036557}  [Source:UniProtKB/TrEMBL;Acc:F7FNE8]
ENSCJAG00000005214	KNOWN_BY_PROJECTION	protein_coding	PIF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	6981772	7176467	R	PIF1 5'-to-3' DNA helicase [Source:HGNC Symbol;Acc:HGNC:26220]
ENSCJAG00000018147	NOVEL	protein_coding	ENSCJAG00000018147	chromosome:C_jacchus3.2.1:9:1:124281992:1	41746909	41798447	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033583}  [Source:UniProtKB/TrEMBL;Acc:F6SIH9]
ENSCJAG00000019662	KNOWN_BY_PROJECTION	protein_coding	CLU	chromosome:C_jacchus3.2.1:13:1:117903854:1	10698231	10715743	D	clusterin [Source:HGNC Symbol;Acc:HGNC:2095]
ENSCJAG00000005154	NOVEL	protein_coding	ENSCJAG00000005154	chromosome:C_jacchus3.2.1:10:1:132174527:1	6866272	6867484	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009399}  [Source:UniProtKB/TrEMBL;Acc:F7GXG7]
ENSCJAG00000005147	NOVEL	protein_coding	ENSCJAG00000005147	chromosome:C_jacchus3.2.1:10:1:132174527:1	6851616	6852899	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052080}  [Source:UniProtKB/TrEMBL;Acc:F7IGW3]
ENSCJAG00000005128	KNOWN	protein_coding	ZNF609	chromosome:C_jacchus3.2.1:10:1:132174527:1	6819071	7011890	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009382}; Zinc finger protein 609 {ECO:0000313|EMBL:JAB04981.1}  [Source:UniProtKB/TrEMBL;Acc:F7H2K4]
ENSCJAG00000021197	KNOWN_BY_PROJECTION	protein_coding	CENPB	chromosome:C_jacchus3.2.1:5:1:159171411:1	9601957	9603491	R	centromere protein B, 80kDa [Source:HGNC Symbol;Acc:HGNC:1852]
ENSCJAG00000032766	NOVEL	protein_coding	ENSCJAG00000032766	chromosome:C_jacchus3.2.1:10:1:132174527:1	6725526	6775091	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047379}  [Source:UniProtKB/TrEMBL;Acc:F7HUL3]
ENSCJAG00000005107	KNOWN	protein_coding	TRIP4	chromosome:C_jacchus3.2.1:10:1:132174527:1	6696673	6713027	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009348}  [Source:UniProtKB/TrEMBL;Acc:F7HI98]
ENSCJAG00000019539	KNOWN_BY_PROJECTION	protein_coding	SCARA3	chromosome:C_jacchus3.2.1:13:1:117903854:1	10641341	10683988	R	scavenger receptor class A, member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
ENSCJAG00000006236	NOVEL	protein_coding	ENSCJAG00000006236	chromosome:C_jacchus3.2.1:12:1:121768101:1	27419537	27423568	D	Elongation factor Tu {ECO:0000256|RuleBase:RU004061}  [Source:UniProtKB/TrEMBL;Acc:F7IMS0]
ENSCJAG00000011285	KNOWN	protein_coding	SLC38A7	chromosome:C_jacchus3.2.1:20:1:44557958:1	12688668	12709245	R	Putative sodium-coupled neutral amino acid transporter 7 {ECO:0000313|EMBL:JAB07229.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045026}  [Source:UniProtKB/TrEMBL;Acc:F6TVM6]
ENSCJAG00000002484	KNOWN_BY_PROJECTION	protein_coding	ZNF827	chromosome:C_jacchus3.2.1:3:1:190850796:1	47002982	47179442	D	zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
ENSCJAG00000015395	KNOWN	protein_coding	CCDC25	chromosome:C_jacchus3.2.1:13:1:117903854:1	10559746	10594681	D	Coiled-coil domain-containing protein 25 {ECO:0000313|EMBL:JAB02106.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028375}  [Source:UniProtKB/TrEMBL;Acc:F6ZN09]
ENSCJAG00000021195	KNOWN_BY_PROJECTION	protein_coding	SPEF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	9593756	9598539	R	sperm flagellar 1 [Source:HGNC Symbol;Acc:HGNC:15874]
ENSCJAG00000001951	KNOWN_BY_PROJECTION	protein_coding	DDX4	chromosome:C_jacchus3.2.1:2:1:204313951:1	151850004	151940800	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:18700]
ENSCJAG00000002482	KNOWN	protein_coding	LSM6	chromosome:C_jacchus3.2.1:3:1:190850796:1	46728725	46753673	R	U6 snRNA-associated Sm-like protein LSm6 {ECO:0000313|EMBL:JAB21757.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004517}  [Source:UniProtKB/TrEMBL;Acc:F7CK97]
ENSCJAG00000021194	KNOWN	protein_coding	C20ORF27	chromosome:C_jacchus3.2.1:5:1:159171411:1	9566110	9583084	R	UPF0687 protein C20orf27 isoform 2 {ECO:0000313|EMBL:JAB09560.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039463}  [Source:UniProtKB/TrEMBL;Acc:F7FSS4]
ENSCJAG00000034934	KNOWN	protein_coding	SLC10A7	chromosome:C_jacchus3.2.1:3:1:190850796:1	46456273	46666762	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004510}  [Source:UniProtKB/TrEMBL;Acc:F7CKD8]
ENSCJAG00000015416	KNOWN_BY_PROJECTION	protein_coding	ESCO2	chromosome:C_jacchus3.2.1:13:1:117903854:1	10525412	10557685	R	establishment of sister chromatid cohesion N-acetyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:27230]
ENSCJAG00000018136	KNOWN_BY_PROJECTION	protein_coding	KRT78	chromosome:C_jacchus3.2.1:9:1:124281992:1	41692717	41730187	R	keratin 78 [Source:HGNC Symbol;Acc:HGNC:28926]
ENSCJAG00000002477	NOVEL	protein_coding	ENSCJAG00000002477	chromosome:C_jacchus3.2.1:3:1:190850796:1	46370625	46379848	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004514}  [Source:UniProtKB/TrEMBL;Acc:F7CKB6]
ENSCJAG00000015448	KNOWN_BY_PROJECTION	protein_coding	PBK	chromosome:C_jacchus3.2.1:13:1:117903854:1	10496415	10522332	D	PDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]
ENSCJAG00000002462	KNOWN_BY_PROJECTION	protein_coding	POU4F2	chromosome:C_jacchus3.2.1:3:1:190850796:1	46236063	46239664	R	POU class 4 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9219]
ENSCJAG00000021184	KNOWN_BY_PROJECTION	protein_coding	HSPA12B	chromosome:C_jacchus3.2.1:5:1:159171411:1	9549664	9565701	D	heat shock 70kD protein 12B [Source:HGNC Symbol;Acc:HGNC:16193]
ENSCJAG00000018094	KNOWN_BY_PROJECTION	protein_coding	KRT4	chromosome:C_jacchus3.2.1:9:1:124281992:1	41659619	41667051	R	keratin 4 [Source:HGNC Symbol;Acc:HGNC:6441]
ENSCJAG00000015467	KNOWN	protein_coding	SCARA5	chromosome:C_jacchus3.2.1:13:1:117903854:1	10340098	10463682	D	Scavenger receptor class A member 5 {ECO:0000313|EMBL:JAB05721.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028494}  [Source:UniProtKB/TrEMBL;Acc:F6UGK9]
ENSCJAG00000002042	NOVEL	protein_coding	ENSCJAG00000002042	chromosome:C_jacchus3.2.1:2:1:204313951:1	151832180	151832746	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003679}  [Source:UniProtKB/TrEMBL;Acc:F7GZB1]
ENSCJAG00000031622	NOVEL	protein_coding	ENSCJAG00000031622	chromosome:C_jacchus3.2.1:5:1:159171411:1	9515642	9516076	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050780}  [Source:UniProtKB/TrEMBL;Acc:F7HDI1]
ENSCJAG00000015456	KNOWN_BY_PROJECTION	protein_coding	NUGGC	chromosome:C_jacchus3.2.1:13:1:117903854:1	10249417	10308484	D	nuclear GTPase, germinal center associated [Source:HGNC Symbol;Acc:HGNC:33550]
ENSCJAG00000006210	KNOWN_BY_PROJECTION	protein_coding	SH2B1	chromosome:C_jacchus3.2.1:12:1:121768101:1	27392855	27419257	R	SH2B adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:30417]
ENSCJAG00000021174	KNOWN_BY_PROJECTION	protein_coding	SIGLEC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	9482290	9501848	R	sialic acid binding Ig-like lectin 1, sialoadhesin [Source:HGNC Symbol;Acc:HGNC:11127]
ENSCJAG00000036723	KNOWN_BY_PROJECTION	protein_coding	KRT3	chromosome:C_jacchus3.2.1:9:1:124281992:1	41643290	41649596	R	keratin 3 [Source:HGNC Symbol;Acc:HGNC:6440]
ENSCJAG00000019930	KNOWN_BY_PROJECTION	protein_coding	ATAT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	31043047	31064761	D	alpha tubulin acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21186]
ENSCJAG00000015478	KNOWN	protein_coding	ELP3	chromosome:C_jacchus3.2.1:13:1:117903854:1	10127588	10231884	R	Elongator complex protein 3 {ECO:0000313|EMBL:JAB07585.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028585}  [Source:UniProtKB/TrEMBL;Acc:F6Z4J6]
ENSCJAG00000002445	KNOWN_BY_PROJECTION	protein_coding	TTC29	chromosome:C_jacchus3.2.1:3:1:190850796:1	45932399	46179913	D	tetratricopeptide repeat domain 29 [Source:HGNC Symbol;Acc:HGNC:29936]
ENSCJAG00000018120	NOVEL	protein_coding	ENSCJAG00000018120	chromosome:C_jacchus3.2.1:9:1:124281992:1	41565512	41578723	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033492}  [Source:UniProtKB/TrEMBL;Acc:F6Q480]
ENSCJAG00000037051	KNOWN_BY_PROJECTION	protein_coding	KIAA0101	chromosome:C_jacchus3.2.1:10:1:132174527:1	6677946	6691593	R	KIAA0101 [Source:HGNC Symbol;Acc:HGNC:28961]
ENSCJAG00000036336	KNOWN_BY_PROJECTION	protein_coding	KRT73	chromosome:C_jacchus3.2.1:9:1:124281992:1	41485044	41494910	R	keratin 73 [Source:HGNC Symbol;Acc:HGNC:28928]
ENSCJAG00000018102	KNOWN_BY_PROJECTION	protein_coding	KRT74	chromosome:C_jacchus3.2.1:9:1:124281992:1	41446263	41454097	R	keratin 74 [Source:HGNC Symbol;Acc:HGNC:28929]
ENSCJAG00000006205	KNOWN_BY_PROJECTION	protein_coding	ATP2A1	chromosome:C_jacchus3.2.1:12:1:121768101:1	27364255	27388792	R	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 [Source:HGNC Symbol;Acc:HGNC:811]
ENSCJAG00000015535	KNOWN	protein_coding	PNOC	chromosome:C_jacchus3.2.1:13:1:117903854:1	9971583	9997561	R	Prepronociceptin preproprotein {ECO:0000313|EMBL:JAB12852.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028597}  [Source:UniProtKB/TrEMBL;Acc:F6Z455]
ENSCJAG00000002043	KNOWN_BY_PROJECTION	protein_coding	IL31RA	chromosome:C_jacchus3.2.1:2:1:204313951:1	151744167	151815280	R	interleukin 31 receptor A [Source:HGNC Symbol;Acc:HGNC:18969]
ENSCJAG00000015540	KNOWN	protein_coding	ZNF395	chromosome:C_jacchus3.2.1:13:1:117903854:1	9922440	9969267	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028643}; Zinc finger protein 395 {ECO:0000313|EMBL:JAB10022.1}  [Source:UniProtKB/TrEMBL;Acc:F6W6R1]
ENSCJAG00000006169	KNOWN_BY_PROJECTION	protein_coding	RABEP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	27346082	27445476	D	rabaptin, RAB GTPase binding effector protein 2 [Source:HGNC Symbol;Acc:HGNC:24817]
ENSCJAG00000015578	KNOWN_BY_PROJECTION	protein_coding	FBXO16	chromosome:C_jacchus3.2.1:13:1:117903854:1	9813908	9874074	D	F-box protein 16 [Source:HGNC Symbol;Acc:HGNC:13618]
ENSCJAG00000019949	KNOWN_BY_PROJECTION	protein_coding	MRPS18B	chromosome:C_jacchus3.2.1:4:1:171630274:1	31034958	31137773	D	mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:HGNC:14516]
ENSCJAG00000002424	KNOWN	protein_coding	EDNRA	chromosome:C_jacchus3.2.1:3:1:190850796:1	45257702	45320837	R	Endothelin-1 receptor isoform a {ECO:0000313|EMBL:JAB11175.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004442}  [Source:UniProtKB/TrEMBL;Acc:F6Y4C1]
ENSCJAG00000015561	KNOWN	protein_coding	FZD3	chromosome:C_jacchus3.2.1:13:1:117903854:1	9721225	9922261	R	Frizzled-3 {ECO:0000313|EMBL:JAB19859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028677}  [Source:UniProtKB/TrEMBL;Acc:F6V1D3]
ENSCJAG00000011318	KNOWN_BY_PROJECTION	protein_coding	CNOT1	chromosome:C_jacchus3.2.1:20:1:44557958:1	12554885	12648462	R	CCR4-NOT transcription complex, subunit 1 [Source:HGNC Symbol;Acc:HGNC:7877]
ENSCJAG00000015598	KNOWN	protein_coding	EXTL3	chromosome:C_jacchus3.2.1:13:1:117903854:1	9530854	9565588	R	Exostosin-like 3 {ECO:0000313|EMBL:JAB04605.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028747}  [Source:UniProtKB/TrEMBL;Acc:F7AKV9]
ENSCJAG00000002068	KNOWN_BY_PROJECTION	protein_coding	IL6ST	chromosome:C_jacchus3.2.1:2:1:204313951:1	151680357	151719649	D	interleukin 6 signal transducer [Source:HGNC Symbol;Acc:HGNC:6021]
ENSCJAG00000002418	KNOWN	protein_coding	TMEM184C	chromosome:C_jacchus3.2.1:3:1:190850796:1	45164387	45180756	R	Transmembrane protein 184C {ECO:0000313|EMBL:JAB06820.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004401}  [Source:UniProtKB/TrEMBL;Acc:F6YNZ4]
ENSCJAG00000002411	KNOWN	protein_coding	PRMT9	chromosome:C_jacchus3.2.1:3:1:190850796:1	45101306	45161122	D	Uncharacterized protein {ECO:0000313|EMBL:JAB13747.1, ECO:0000313|Ensembl:ENSCJAP00000004389}  [Source:UniProtKB/TrEMBL;Acc:F7AP53]
ENSCJAG00000015614	KNOWN	protein_coding	INTS9	chromosome:C_jacchus3.2.1:13:1:117903854:1	9387704	9516932	D	Integrator complex subunit 9 isoform 1 {ECO:0000313|EMBL:JAB03305.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028804}  [Source:UniProtKB/TrEMBL;Acc:F6Y0H5]
ENSCJAG00000005023	KNOWN	protein_coding	CSNK1G1	chromosome:C_jacchus3.2.1:10:1:132174527:1	6493004	6683846	R	Casein kinase I isoform gamma-1 {ECO:0000313|EMBL:JAB10407.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009275}  [Source:UniProtKB/TrEMBL;Acc:F7I3V3]
ENSCJAG00000006147	KNOWN	protein_coding	CD19	chromosome:C_jacchus3.2.1:12:1:121768101:1	27330133	27338070	R	B-lymphocyte antigen CD19 precursor  [Source:RefSeq peptide;Acc:NP_001254698]
ENSCJAG00000002118	NOVEL	protein_coding	ENSCJAG00000002118	chromosome:C_jacchus3.2.1:2:1:204313951:1	151652742	151654417	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003810}  [Source:UniProtKB/TrEMBL;Acc:F7GZ56]
ENSCJAG00000004981	KNOWN	protein_coding	PPIB	chromosome:C_jacchus3.2.1:10:1:132174527:1	6480835	6489415	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7ISM3]
ENSCJAG00000015654	KNOWN	protein_coding	HMBOX1	chromosome:C_jacchus3.2.1:13:1:117903854:1	9224077	9387188	R	Homeobox-containing protein 1 {ECO:0000313|EMBL:JAB09175.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028878}  [Source:UniProtKB/TrEMBL;Acc:F6W5C3]
ENSCJAG00000014551	KNOWN_BY_PROJECTION	protein_coding	SUMO2	chromosome:C_jacchus3.2.1:13:1:117903854:1	9189553	9195270	R	small ubiquitin-like modifier 2 [Source:HGNC Symbol;Acc:HGNC:11125]
ENSCJAG00000011535	KNOWN_BY_PROJECTION	protein_coding	SETD6	chromosome:C_jacchus3.2.1:20:1:44557958:1	12550537	12554593	D	SET domain containing 6 [Source:HGNC Symbol;Acc:HGNC:26116]
ENSCJAG00000002120	KNOWN_BY_PROJECTION	protein_coding	ANKRD55	chromosome:C_jacchus3.2.1:2:1:204313951:1	151409135	151548250	D	ankyrin repeat domain 55 [Source:HGNC Symbol;Acc:HGNC:25681]
ENSCJAG00000034991	NOVEL	protein_coding	ENSCJAG00000034991	chromosome:C_jacchus3.2.1:20:1:44557958:1	12518444	12519771	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018422}  [Source:UniProtKB/TrEMBL;Acc:F7H145]
ENSCJAG00000002135	NOVEL	protein_coding	ENSCJAG00000002135	chromosome:C_jacchus3.2.1:2:1:204313951:1	151108803	151140951	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042301}  [Source:UniProtKB/TrEMBL;Acc:F6XIJ4]
ENSCJAG00000006133	KNOWN	protein_coding	NFATC2IP	chromosome:C_jacchus3.2.1:12:1:121768101:1	27304735	27318311	R	NFATC2-interacting protein {ECO:0000313|EMBL:JAB29847.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011278}  [Source:UniProtKB/TrEMBL;Acc:F7IMX0]
ENSCJAG00000002136	NOVEL	protein_coding	MAP3K1	chromosome:C_jacchus3.2.1:2:1:204313951:1	150724275	150806857	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003848}  [Source:UniProtKB/TrEMBL;Acc:F7GU33]
ENSCJAG00000005006	KNOWN_BY_PROJECTION	protein_coding	SNX22	chromosome:C_jacchus3.2.1:10:1:132174527:1	6477373	6480182	D	sorting nexin 22 [Source:HGNC Symbol;Acc:HGNC:16315]
ENSCJAG00000015694	KNOWN_BY_PROJECTION	protein_coding	KIF13B	chromosome:C_jacchus3.2.1:13:1:117903854:1	8986704	9206665	D	kinesin family member 13B [Source:HGNC Symbol;Acc:HGNC:14405]
ENSCJAG00000002145	KNOWN	protein_coding	C5ORF35	chromosome:C_jacchus3.2.1:2:1:204313951:1	150704432	150711711	R	Putative uncharacterized protein C5ORF35 {ECO:0000313|EMBL:ABY79120.1}; SET domain-containing protein 9 isoform 1 {ECO:0000313|EMBL:JAB03440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003863}  [Source:UniProtKB/TrEMBL;Acc:B0KW97]
ENSCJAG00000021161	KNOWN_BY_PROJECTION	protein_coding	ADAM33	chromosome:C_jacchus3.2.1:5:1:159171411:1	9461033	9475391	R	ADAM metallopeptidase domain 33 [Source:HGNC Symbol;Acc:HGNC:15478]
ENSCJAG00000018122	KNOWN_BY_PROJECTION	protein_coding	KRT76	chromosome:C_jacchus3.2.1:9:1:124281992:1	41423362	41688883	R	keratin 76 [Source:HGNC Symbol;Acc:HGNC:24430]
ENSCJAG00000019956	KNOWN_BY_PROJECTION	protein_coding	PPP1R10	chromosome:C_jacchus3.2.1:4:1:171630274:1	31017253	31034489	R	protein phosphatase 1, regulatory subunit 10 [Source:HGNC Symbol;Acc:HGNC:9284]
ENSCJAG00000015731	KNOWN	protein_coding	MSRA	chromosome:C_jacchus3.2.1:13:1:117903854:1	8309332	8703776	R	Mitochondrial peptide methionine sulfoxide reductase isoform a {ECO:0000313|EMBL:JAB12948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028966}  [Source:UniProtKB/TrEMBL;Acc:F7BLC3]
ENSCJAG00000021160	KNOWN_BY_PROJECTION	protein_coding	GFRA4	chromosome:C_jacchus3.2.1:5:1:159171411:1	9454444	9457172	R	GDNF family receptor alpha 4 [Source:HGNC Symbol;Acc:HGNC:13821]
ENSCJAG00000032565	NOVEL	protein_coding	ENSCJAG00000032565	chromosome:C_jacchus3.2.1:13:1:117903854:1	8090443	8093307	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049871}  [Source:UniProtKB/TrEMBL;Acc:F6YUF1]
ENSCJAG00000004206	NOVEL	protein_coding	ENSCJAG00000004206	chromosome:C_jacchus3.2.1:13:1:117903854:1	8066877	8069378	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047116}  [Source:UniProtKB/TrEMBL;Acc:F7HX63]
ENSCJAG00000006100	KNOWN_BY_PROJECTION	protein_coding	SPNS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	27283342	27294484	R	spinster homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:30621]
ENSCJAG00000004193	KNOWN_BY_PROJECTION	protein_coding	PRSS55	chromosome:C_jacchus3.2.1:13:1:117903854:1	8036324	8049756	R	protease, serine, 55 [Source:HGNC Symbol;Acc:HGNC:30824]
ENSCJAG00000004187	KNOWN_BY_PROJECTION	protein_coding	RP1L1	chromosome:C_jacchus3.2.1:13:1:117903854:1	7948707	7965539	D	retinitis pigmentosa 1-like 1 [Source:HGNC Symbol;Acc:HGNC:15946]
ENSCJAG00000033767	KNOWN_BY_PROJECTION	protein_coding	LAT	chromosome:C_jacchus3.2.1:12:1:121768101:1	27276261	27282991	R	linker for activation of T cells [Source:HGNC Symbol;Acc:HGNC:18874]
ENSCJAG00000004183	KNOWN_BY_PROJECTION	protein_coding	C8orf74	chromosome:C_jacchus3.2.1:13:1:117903854:1	7864316	7867440	R	chromosome 8 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:32296]
ENSCJAG00000006098	KNOWN	protein_coding	SBK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	27204859	27208344	D	Serine/threonine-protein kinase SBK1 {ECO:0000256|PIRNR:PIRNR000566}  [Source:UniProtKB/TrEMBL;Acc:F7ISR1]
ENSCJAG00000004168	KNOWN	protein_coding	SOX7	chromosome:C_jacchus3.2.1:13:1:117903854:1	7708887	7837310	D	PIN2/TERF1-interacting telomerase inhibitor 1 {ECO:0000313|EMBL:JAB46766.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050399}  [Source:UniProtKB/TrEMBL;Acc:F7EYL6]
ENSCJAG00000011550	KNOWN_BY_PROJECTION	protein_coding	NDRG4	chromosome:C_jacchus3.2.1:20:1:44557958:1	12496450	12549049	D	NDRG family member 4 [Source:HGNC Symbol;Acc:HGNC:14466]
ENSCJAG00000004167	KNOWN_BY_PROJECTION	protein_coding	XKR6	chromosome:C_jacchus3.2.1:13:1:117903854:1	7628560	7787487	D	XK, Kell blood group complex subunit-related family, member 6 [Source:HGNC Symbol;Acc:HGNC:27806]
ENSCJAG00000002152	KNOWN	protein_coding	MIER3	chromosome:C_jacchus3.2.1:2:1:204313951:1	150673494	150702531	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003896}  [Source:UniProtKB/TrEMBL;Acc:F7GFT7]
ENSCJAG00000004158	NOVEL	pseudogene	ENSCJAG00000004158	chromosome:C_jacchus3.2.1:13:1:117903854:1	7400488	7401468	R	<no descrition>
ENSCJAG00000004157	NOVEL	protein_coding	ENSCJAG00000004157	chromosome:C_jacchus3.2.1:13:1:117903854:1	7370119	7376095	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007541}  [Source:UniProtKB/TrEMBL;Acc:F6RUV0]
ENSCJAG00000018016	KNOWN_BY_PROJECTION	protein_coding	KRT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	41391489	41555070	R	keratin 1 [Source:HGNC Symbol;Acc:HGNC:6412]
ENSCJAG00000004116	KNOWN	protein_coding	MTMR9	chromosome:C_jacchus3.2.1:13:1:117903854:1	7238855	7282284	R	Myotubularin-related protein 9 {ECO:0000313|EMBL:JAB02345.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050455}  [Source:UniProtKB/TrEMBL;Acc:F7H906]
ENSCJAG00000004107	NOVEL	protein_coding	ENSCJAG00000004107	chromosome:C_jacchus3.2.1:13:1:117903854:1	7198019	7214880	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007473}  [Source:UniProtKB/TrEMBL;Acc:F6TDV6]
ENSCJAG00000018066	NOVEL	protein_coding	ENSCJAG00000018066	chromosome:C_jacchus3.2.1:9:1:124281992:1	41363270	41369936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041982}  [Source:UniProtKB/TrEMBL;Acc:F7G4L1]
ENSCJAG00000004106	NOVEL	protein_coding	ENSCJAG00000004106	chromosome:C_jacchus3.2.1:13:1:117903854:1	7133335	7136854	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007452}  [Source:UniProtKB/TrEMBL;Acc:F6TQX4]
ENSCJAG00000004094	KNOWN	protein_coding	FAM167A	chromosome:C_jacchus3.2.1:13:1:117903854:1	7126513	7146748	D	Protein FAM167A {ECO:0000313|EMBL:JAB01932.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007447}  [Source:UniProtKB/TrEMBL;Acc:F6U0Y2]
ENSCJAG00000004076	KNOWN_BY_PROJECTION	protein_coding	BLK	chromosome:C_jacchus3.2.1:13:1:117903854:1	6992325	7080513	R	BLK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:1057]
ENSCJAG00000004856	KNOWN	protein_coding	SNX1	chromosome:C_jacchus3.2.1:10:1:132174527:1	6421444	6463452	D	Sorting nexin-1 isoform a {ECO:0000313|EMBL:JAB02868.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009069}  [Source:UniProtKB/TrEMBL;Acc:F7I414]
ENSCJAG00000011635	KNOWN	protein_coding	GINS3	chromosome:C_jacchus3.2.1:20:1:44557958:1	12422485	12432662	D	DNA replication complex GINS protein PSF3 isoform b {ECO:0000313|EMBL:JAB06490.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021384}  [Source:UniProtKB/TrEMBL;Acc:F6T6J0]
ENSCJAG00000004072	NOVEL	pseudogene	ENSCJAG00000004072	chromosome:C_jacchus3.2.1:13:1:117903854:1	6975305	6975466	R	<no descrition>
ENSCJAG00000031356	NOVEL	pseudogene	ENSCJAG00000031356	chromosome:C_jacchus3.2.1:13:1:117903854:1	6906557	6907155	D	<no descrition>
ENSCJAG00000004032	KNOWN_BY_PROJECTION	protein_coding	GATA4	chromosome:C_jacchus3.2.1:13:1:117903854:1	6792397	6843987	R	GATA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:4173]
ENSCJAG00000014098	NOVEL	pseudogene	ENSCJAG00000014098	chromosome:C_jacchus3.2.1:13:1:117903854:1	6789536	6789719	D	<no descrition>
ENSCJAG00000004024	NOVEL	protein_coding	ENSCJAG00000004024	chromosome:C_jacchus3.2.1:13:1:117903854:1	6788913	6805246	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048180}  [Source:UniProtKB/TrEMBL;Acc:F7GYI1]
ENSCJAG00000004834	KNOWN	protein_coding	FAM96A	chromosome:C_jacchus3.2.1:10:1:132174527:1	6401590	6419723	R	MIP18 family protein FAM96A isoform a {ECO:0000313|EMBL:JAB02509.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008850}  [Source:UniProtKB/TrEMBL;Acc:F7IHH5]
ENSCJAG00000004010	KNOWN_BY_PROJECTION	protein_coding	NEIL2	chromosome:C_jacchus3.2.1:13:1:117903854:1	6766094	6781036	R	nei endonuclease VIII-like 2 (E. coli) [Source:HGNC Symbol;Acc:HGNC:18956]
ENSCJAG00000002375	KNOWN_BY_PROJECTION	protein_coding	ARHGAP10	chromosome:C_jacchus3.2.1:3:1:190850796:1	44674508	45033882	R	Rho GTPase activating protein 10 [Source:HGNC Symbol;Acc:HGNC:26099]
ENSCJAG00000021148	KNOWN_BY_PROJECTION	protein_coding	ATRN	chromosome:C_jacchus3.2.1:5:1:159171411:1	9268977	9438045	D	attractin [Source:HGNC Symbol;Acc:HGNC:885]
ENSCJAG00000003955	KNOWN_BY_PROJECTION	protein_coding	CTSB	chromosome:C_jacchus3.2.1:13:1:117903854:1	6691793	6701037	D	cathepsin B [Source:HGNC Symbol;Acc:HGNC:2527]
ENSCJAG00000015104	KNOWN	protein_coding	GPBP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	150383042	150456813	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027905}  [Source:UniProtKB/TrEMBL;Acc:F7E7J2]
ENSCJAG00000011648	KNOWN_BY_PROJECTION	protein_coding	PRSS54	chromosome:C_jacchus3.2.1:20:1:44557958:1	12321081	12332888	R	protease, serine, 54 [Source:HGNC Symbol;Acc:HGNC:26336]
ENSCJAG00000011662	KNOWN_BY_PROJECTION	protein_coding	CCDC113	chromosome:C_jacchus3.2.1:20:1:44557958:1	12295608	12322442	D	coiled-coil domain containing 113 [Source:HGNC Symbol;Acc:HGNC:25002]
ENSCJAG00000032629	NOVEL	pseudogene	ENSCJAG00000032629	chromosome:C_jacchus3.2.1:5:1:159171411:1	9140274	9141281	R	<no descrition>
ENSCJAG00000003988	KNOWN	protein_coding	FDFT1	chromosome:C_jacchus3.2.1:13:1:117903854:1	6628941	6756995	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007267}  [Source:UniProtKB/TrEMBL;Acc:F6TRY2]
ENSCJAG00000011673	KNOWN	protein_coding	CSNK2A2	chromosome:C_jacchus3.2.1:20:1:44557958:1	12204189	12245602	R	Casein kinase II subunit alpha {ECO:0000313|EMBL:JAB04072.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021477}  [Source:UniProtKB/TrEMBL;Acc:F6R0E2]
ENSCJAG00000006014	KNOWN	protein_coding	XPO6	chromosome:C_jacchus3.2.1:12:1:121768101:1	26968362	27089030	R	Exportin-6 isoform 2 {ECO:0000313|EMBL:JAB11837.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011196}  [Source:UniProtKB/TrEMBL;Acc:F7HX34]
ENSCJAG00000019968	KNOWN_BY_PROJECTION	protein_coding	ABCF1	chromosome:C_jacchus3.2.1:4:1:171630274:1	30945807	30967235	D	ATP-binding cassette, sub-family F (GCN20), member 1 [Source:HGNC Symbol;Acc:HGNC:70]
ENSCJAG00000006003	KNOWN_BY_PROJECTION	protein_coding	GSG1L	chromosome:C_jacchus3.2.1:12:1:121768101:1	26682578	26699890	R	GSG1-like [Source:HGNC Symbol;Acc:HGNC:28283]
ENSCJAG00000011700	KNOWN	protein_coding	C16ORF80	chromosome:C_jacchus3.2.1:20:1:44557958:1	12163088	12179663	R	UPF0468 protein C16orf80 {ECO:0000313|EMBL:JAB08463.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021481}  [Source:UniProtKB/TrEMBL;Acc:F6QRG1]
ENSCJAG00000011707	KNOWN_BY_PROJECTION	protein_coding	TIPIN	chromosome:C_jacchus3.2.1:20:1:44557958:1	12137651	12138931	R	TIMELESS interacting protein [Source:HGNC Symbol;Acc:HGNC:30750]
ENSCJAG00000002360	KNOWN	protein_coding	NR3C2	chromosome:C_jacchus3.2.1:3:1:190850796:1	44302895	44668590	D	Callithrix jacchus nuclear receptor subfamily 3, group C, member 2 (NR3C2), mRNA. [Source:RefSeq mRNA;Acc:NM_001267749]
ENSCJAG00000002358	NOVEL	pseudogene	ENSCJAG00000002358	chromosome:C_jacchus3.2.1:3:1:190850796:1	44276911	44277634	R	<no descrition>
ENSCJAG00000003953	KNOWN_BY_PROJECTION	protein_coding	DEFB136	chromosome:C_jacchus3.2.1:13:1:117903854:1	6618046	6619021	D	defensin, beta 136 [Source:HGNC Symbol;Acc:HGNC:34433]
ENSCJAG00000003951	KNOWN_BY_PROJECTION	protein_coding	DEFB135	chromosome:C_jacchus3.2.1:13:1:117903854:1	6608156	6610217	R	defensin, beta 135 [Source:HGNC Symbol;Acc:HGNC:32400]
ENSCJAG00000003946	KNOWN_BY_PROJECTION	protein_coding	DEFB134	chromosome:C_jacchus3.2.1:13:1:117903854:1	6600108	6602157	D	defensin, beta 134 [Source:HGNC Symbol;Acc:HGNC:32399]
ENSCJAG00000034847	NOVEL	protein_coding	ENSCJAG00000034847	chromosome:C_jacchus3.2.1:13:1:117903854:1	6592622	6608060	R	<no descrition>
ENSCJAG00000003945	NOVEL	protein_coding	ENSCJAG00000003945	chromosome:C_jacchus3.2.1:13:1:117903854:1	6587252	6592653	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007157}  [Source:UniProtKB/TrEMBL;Acc:F6RM30]
ENSCJAG00000003942	KNOWN_BY_PROJECTION	protein_coding	DEFB108B	chromosome:C_jacchus3.2.1:13:1:117903854:1	6572408	6574426	D	defensin, beta 108B [Source:HGNC Symbol;Acc:HGNC:29966]
ENSCJAG00000005965	KNOWN_BY_PROJECTION	protein_coding	KIAA0556	chromosome:C_jacchus3.2.1:12:1:121768101:1	26401302	26634467	D	KIAA0556 [Source:HGNC Symbol;Acc:HGNC:29068]
ENSCJAG00000021125	KNOWN	protein_coding	C20ORF194	chromosome:C_jacchus3.2.1:5:1:159171411:1	9047712	9179512	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039366}  [Source:UniProtKB/TrEMBL;Acc:F7HA53]
ENSCJAG00000003939	NOVEL	pseudogene	ENSCJAG00000003939	chromosome:C_jacchus3.2.1:13:1:117903854:1	6558207	6559447	D	<no descrition>
ENSCJAG00000004806	KNOWN_BY_PROJECTION	protein_coding	DAPK2	chromosome:C_jacchus3.2.1:10:1:132174527:1	6245962	6382052	R	death-associated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:2675]
ENSCJAG00000003919	NOVEL	protein_coding	ENSCJAG00000003919	chromosome:C_jacchus3.2.1:13:1:117903854:1	6530940	6533795	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007145}  [Source:UniProtKB/TrEMBL;Acc:F6RXS9]
ENSCJAG00000002355	NOVEL	protein_coding	ENSCJAG00000002355	chromosome:C_jacchus3.2.1:3:1:190850796:1	42966510	43315031	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004241}  [Source:UniProtKB/TrEMBL;Acc:F6YP20]
ENSCJAG00000003913	NOVEL	protein_coding	ENSCJAG00000003913	chromosome:C_jacchus3.2.1:13:1:117903854:1	6506665	6508623	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007115}  [Source:UniProtKB/TrEMBL;Acc:F6S961]
ENSCJAG00000003915	NOVEL	protein_coding	ENSCJAG00000003915	chromosome:C_jacchus3.2.1:13:1:117903854:1	6511150	6514766	D	Beta-defensin {ECO:0000256|RuleBase:RU231113}  [Source:UniProtKB/TrEMBL;Acc:F6S936]
ENSCJAG00000003909	NOVEL	protein_coding	ENSCJAG00000003909	chromosome:C_jacchus3.2.1:13:1:117903854:1	6500889	6504288	R	Beta-defensin {ECO:0000256|RuleBase:RU231113}  [Source:UniProtKB/TrEMBL;Acc:F6PV70]
ENSCJAG00000002343	KNOWN	protein_coding	DCLK2	chromosome:C_jacchus3.2.1:3:1:190850796:1	42415452	42607788	R	Serine/threonine-protein kinase DCLK2 isoform b {ECO:0000313|EMBL:JAB15858.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004234}  [Source:UniProtKB/TrEMBL;Acc:F6YPI4]
ENSCJAG00000021815	KNOWN_BY_PROJECTION	protein_coding	MAB21L2	chromosome:C_jacchus3.2.1:3:1:190850796:1	42087419	42090212	R	mab-21-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:6758]
ENSCJAG00000003907	KNOWN	protein_coding	DEFB104	chromosome:C_jacchus3.2.1:13:1:117903854:1	6490530	6495654	R	Beta-defensin {ECO:0000256|RuleBase:RU231113}  [Source:UniProtKB/TrEMBL;Acc:A8CYI3]
ENSCJAG00000031932	NOVEL	protein_coding	ENSCJAG00000031932	chromosome:C_jacchus3.2.1:13:1:117903854:1	6485350	6485917	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049921}  [Source:UniProtKB/TrEMBL;Acc:F6UQ79]
ENSCJAG00000002340	NOVEL	pseudogene	ENSCJAG00000002340	chromosome:C_jacchus3.2.1:3:1:190850796:1	41940104	41941295	R	<no descrition>
ENSCJAG00000002337	NOVEL	pseudogene	ENSCJAG00000002337	chromosome:C_jacchus3.2.1:3:1:190850796:1	41934286	41934746	R	<no descrition>
ENSCJAG00000003899	NOVEL	protein_coding	ENSCJAG00000003899	chromosome:C_jacchus3.2.1:13:1:117903854:1	6466232	6480652	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007097}  [Source:UniProtKB/TrEMBL;Acc:F6T691]
ENSCJAG00000003894	NOVEL	protein_coding	ENSCJAG00000003894	chromosome:C_jacchus3.2.1:13:1:117903854:1	6439571	6440671	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007081}  [Source:UniProtKB/TrEMBL;Acc:F6TH10]
ENSCJAG00000011709	KNOWN_BY_PROJECTION	protein_coding	MMP15	chromosome:C_jacchus3.2.1:20:1:44557958:1	12076012	12099921	D	matrix metallopeptidase 15 (membrane-inserted) [Source:HGNC Symbol;Acc:HGNC:7161]
ENSCJAG00000003893	NOVEL	protein_coding	ENSCJAG00000003893	chromosome:C_jacchus3.2.1:13:1:117903854:1	6426908	6430112	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007071}  [Source:UniProtKB/TrEMBL;Acc:F6TSY2]
ENSCJAG00000015153	KNOWN	protein_coding	PLK2	chromosome:C_jacchus3.2.1:2:1:204313951:1	149123508	149129720	D	Serine/threonine-protein kinase PLK {ECO:0000256|RuleBase:RU361162}  [Source:UniProtKB/TrEMBL;Acc:F6Y665]
ENSCJAG00000005950	NOVEL	protein_coding	ENSCJAG00000005950	chromosome:C_jacchus3.2.1:12:1:121768101:1	26328654	26401041	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010947}  [Source:UniProtKB/TrEMBL;Acc:F7IFE0]
ENSCJAG00000003891	KNOWN_BY_PROJECTION	protein_coding	DEFA5	chromosome:C_jacchus3.2.1:13:1:117903854:1	6382011	6383403	R	defensin, alpha 5, Paneth cell-specific [Source:HGNC Symbol;Acc:HGNC:2764]
ENSCJAG00000003882	KNOWN_BY_PROJECTION	protein_coding	DEFA4	chromosome:C_jacchus3.2.1:13:1:117903854:1	6246121	6300261	R	defensin, alpha 4, corticostatin [Source:HGNC Symbol;Acc:HGNC:2763]
ENSCJAG00000003884	NOVEL	protein_coding	ENSCJAG00000003884	chromosome:C_jacchus3.2.1:13:1:117903854:1	6213166	6352111	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007063}  [Source:UniProtKB/TrEMBL;Acc:F6U3I8]
ENSCJAG00000011733	KNOWN	protein_coding	USB1	chromosome:C_jacchus3.2.1:20:1:44557958:1	12055087	12071165	D	U6 snRNA phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_03040}  [Source:UniProtKB/TrEMBL;Acc:F6TF64]
ENSCJAG00000003877	KNOWN	protein_coding	DEFB1	chromosome:C_jacchus3.2.1:13:1:117903854:1	6185302	6195103	R	Beta-defensin 1 preproprotein {ECO:0000313|EMBL:JAB06092.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007044}  [Source:UniProtKB/TrEMBL;Acc:F6PK08]
ENSCJAG00000022826	KNOWN	protein_coding	ZNF319	chromosome:C_jacchus3.2.1:20:1:44557958:1	12047901	12053053	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041407}; Zinc finger protein 319 {ECO:0000313|EMBL:JAB03259.1}  [Source:UniProtKB/TrEMBL;Acc:F7DF85]
ENSCJAG00000031444	KNOWN_BY_PROJECTION	protein_coding	IL21R	chromosome:C_jacchus3.2.1:12:1:121768101:1	26292850	26307690	D	interleukin 21 receptor [Source:HGNC Symbol;Acc:HGNC:6006]
ENSCJAG00000011752	KNOWN_BY_PROJECTION	protein_coding	TEPP	chromosome:C_jacchus3.2.1:20:1:44557958:1	12036164	12040055	D	testis, prostate and placenta expressed [Source:HGNC Symbol;Acc:HGNC:33745]
ENSCJAG00000003864	KNOWN	protein_coding	XKR5	chromosome:C_jacchus3.2.1:13:1:117903854:1	6124028	6148203	R	XK-related protein {ECO:0000256|RuleBase:RU910716}  [Source:UniProtKB/TrEMBL;Acc:F6PU51]
ENSCJAG00000019988	KNOWN	protein_coding	PRR3	chromosome:C_jacchus3.2.1:4:1:171630274:1	30927080	30938010	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037195}  [Source:UniProtKB/TrEMBL;Acc:F7A0R3]
ENSCJAG00000005921	KNOWN	protein_coding	IL4R	chromosome:C_jacchus3.2.1:12:1:121768101:1	26168290	26220599	D	Callithrix jacchus interleukin 4 receptor (IL4R), mRNA. [Source:RefSeq mRNA;Acc:NM_001257232]
ENSCJAG00000023068	KNOWN_BY_PROJECTION	protein_coding	GAPT	chromosome:C_jacchus3.2.1:2:1:204313951:1	149091290	149093360	R	GRB2-binding adaptor protein, transmembrane [Source:HGNC Symbol;Acc:HGNC:26588]
ENSCJAG00000011758	KNOWN_BY_PROJECTION	protein_coding	CNGB1	chromosome:C_jacchus3.2.1:20:1:44557958:1	11929463	12019677	R	cyclic nucleotide gated channel beta 1 [Source:HGNC Symbol;Acc:HGNC:2151]
ENSCJAG00000015195	KNOWN_BY_PROJECTION	protein_coding	RAB3C	chromosome:C_jacchus3.2.1:2:1:204313951:1	148713721	148997758	R	RAB3C, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30269]
ENSCJAG00000000204	NOVEL	protein_coding	ENSCJAG00000000204	chromosome:C_jacchus3.2.1:13:1:117903854:1	6013857	6075239	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000353}  [Source:UniProtKB/TrEMBL;Acc:F7HJ17]
ENSCJAG00000020515	KNOWN_BY_PROJECTION	protein_coding	NSMCE1	chromosome:C_jacchus3.2.1:12:1:121768101:1	26072354	26107470	R	non-SMC element 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29897]
ENSCJAG00000015205	NOVEL	pseudogene	ENSCJAG00000015205	chromosome:C_jacchus3.2.1:2:1:204313951:1	148631220	148632676	R	<no descrition>
ENSCJAG00000015276	NOVEL	pseudogene	ENSCJAG00000015276	chromosome:C_jacchus3.2.1:2:1:204313951:1	148262996	148264495	D	<no descrition>
ENSCJAG00000020509	KNOWN_BY_PROJECTION	protein_coding	KDM8	chromosome:C_jacchus3.2.1:12:1:121768101:1	26045999	26066298	D	lysine (K)-specific demethylase 8 [Source:HGNC Symbol;Acc:HGNC:25840]
ENSCJAG00000011805	NOVEL	protein_coding	ENSCJAG00000011805	chromosome:C_jacchus3.2.1:20:1:44557958:1	11844241	11846171	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021668}  [Source:UniProtKB/TrEMBL;Acc:F6QYY1]
ENSCJAG00000005131	NOVEL	protein_coding	ENSCJAG00000005131	chromosome:C_jacchus3.2.1:12:1:121768101:1	25975269	25976896	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052137}  [Source:UniProtKB/TrEMBL;Acc:F7I0F1]
ENSCJAG00000015215	KNOWN	protein_coding	PDE4D	chromosome:C_jacchus3.2.1:2:1:204313951:1	148165319	148580039	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028126}; cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D8 {ECO:0000313|EMBL:JAB35215.1}  [Source:UniProtKB/TrEMBL;Acc:F7B975]
ENSCJAG00000000227	KNOWN	protein_coding	ANGPT2	chromosome:C_jacchus3.2.1:13:1:117903854:1	5826922	5890121	R	Angiopoietin-2 isoform a {ECO:0000313|EMBL:JAB17263.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000387}  [Source:UniProtKB/TrEMBL;Acc:F7H8K1]
ENSCJAG00000021119	KNOWN	protein_coding	SLC4A11	chromosome:C_jacchus3.2.1:5:1:159171411:1	9023213	9034363	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039315}  [Source:UniProtKB/TrEMBL;Acc:F7DE93]
ENSCJAG00000000217	KNOWN	protein_coding	MCPH1	chromosome:C_jacchus3.2.1:13:1:117903854:1	5722111	5968944	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000364}  [Source:UniProtKB/TrEMBL;Acc:F7HDY4]
ENSCJAG00000012656	NOVEL	protein_coding	ENSCJAG00000012656	chromosome:C_jacchus3.2.1:13:1:117903854:1	3224390	3254820	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023169}  [Source:UniProtKB/TrEMBL;Acc:F7HX51]
ENSCJAG00000018075	NOVEL	protein_coding	ENSCJAG00000018075	chromosome:C_jacchus3.2.1:9:1:124281992:1	41323440	41342106	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033429}  [Source:UniProtKB/TrEMBL;Acc:F6RLP8]
ENSCJAG00000011810	KNOWN_BY_PROJECTION	protein_coding	KIFC3	chromosome:C_jacchus3.2.1:20:1:44557958:1	11788250	11825512	R	kinesin family member C3 [Source:HGNC Symbol;Acc:HGNC:6326]
ENSCJAG00000004567	KNOWN	protein_coding	HERC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	5931879	6165647	R	Putative E3 ubiquitin-protein ligase HERC1 {ECO:0000313|EMBL:JAB46435.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008743}  [Source:UniProtKB/TrEMBL;Acc:F7HMC1]
ENSCJAG00000021114	KNOWN_BY_PROJECTION	protein_coding	ITPA	chromosome:C_jacchus3.2.1:5:1:159171411:1	9006050	9020910	D	inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:HGNC Symbol;Acc:HGNC:6176]
ENSCJAG00000021106	KNOWN_BY_PROJECTION	protein_coding	DDRGK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	8982939	8995866	R	DDRGK domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16110]
ENSCJAG00000012584	KNOWN_BY_PROJECTION	protein_coding	CSMD1	chromosome:C_jacchus3.2.1:13:1:117903854:1	2102226	2953895	R	CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
ENSCJAG00000021100	NOVEL	protein_coding	ENSCJAG00000021100	chromosome:C_jacchus3.2.1:5:1:159171411:1	8955852	8966501	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039271}  [Source:UniProtKB/TrEMBL;Acc:F7F1L9]
ENSCJAG00000015280	NOVEL	protein_coding	ENSCJAG00000015280	chromosome:C_jacchus3.2.1:2:1:204313951:1	148081372	148082865	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028138}  [Source:UniProtKB/TrEMBL;Acc:F7AQH0]
ENSCJAG00000023290	NOVEL	pseudogene	ENSCJAG00000023290	chromosome:C_jacchus3.2.1:5:1:159171411:1	8937427	8940036	R	<no descrition>
ENSCJAG00000004563	KNOWN_BY_PROJECTION	protein_coding	FBXL22	chromosome:C_jacchus3.2.1:10:1:132174527:1	5920593	5926269	D	F-box and leucine-rich repeat protein 22 [Source:HGNC Symbol;Acc:HGNC:27537]
ENSCJAG00000018063	KNOWN_BY_PROJECTION	protein_coding	KRT82	chromosome:C_jacchus3.2.1:9:1:124281992:1	41265462	41277615	R	keratin 82 [Source:HGNC Symbol;Acc:HGNC:6459]
ENSCJAG00000023069	NOVEL	protein_coding	ENSCJAG00000023069	chromosome:C_jacchus3.2.1:2:1:204313951:1	146998463	147001795	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041602}  [Source:UniProtKB/TrEMBL;Acc:F7E9L0]
ENSCJAG00000015283	KNOWN_BY_PROJECTION	protein_coding	DEPDC1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	146796688	146898831	D	DEP domain containing 1B [Source:HGNC Symbol;Acc:HGNC:24902]
ENSCJAG00000011825	KNOWN	protein_coding	KATNB1	chromosome:C_jacchus3.2.1:20:1:44557958:1	11764099	11786505	D	Katanin p80 WD40 repeat-containing subunit B1 {ECO:0000256|HAMAP-Rule:MF_03022}  [Source:UniProtKB/TrEMBL;Acc:F6T3R8]
ENSCJAG00000038154	KNOWN_BY_PROJECTION	protein_coding	KRT75	chromosome:C_jacchus3.2.1:9:1:124281992:1	41248313	41310878	R	keratin 75 [Source:HGNC Symbol;Acc:HGNC:24431]
ENSCJAG00000010290	NOVEL	pseudogene	ENSCJAG00000010290	chromosome:C_jacchus3.2.1:13:1:117903854:1	1997319	1997727	D	<no descrition>
ENSCJAG00000015335	KNOWN	protein_coding	ELOVL7	chromosome:C_jacchus3.2.1:2:1:204313951:1	146704072	146731792	D	Elongation of very long chain fatty acids protein {ECO:0000256|RuleBase:RU361115}  [Source:UniProtKB/TrEMBL;Acc:F6VQ90]
ENSCJAG00000020749	KNOWN_BY_PROJECTION	protein_coding	ZKSCAN2	chromosome:C_jacchus3.2.1:12:1:121768101:1	24100637	24120000	R	zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:HGNC:25677]
ENSCJAG00000021095	KNOWN	protein_coding	UBOX5	chromosome:C_jacchus3.2.1:5:1:159171411:1	8904713	8918573	R	RING finger protein 37 isoform b {ECO:0000313|EMBL:JAB26540.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046265}  [Source:UniProtKB/TrEMBL;Acc:F7ATL9]
ENSCJAG00000021094	KNOWN_BY_PROJECTION	protein_coding	AVP	chromosome:C_jacchus3.2.1:5:1:159171411:1	8875501	8877544	R	arginine vasopressin [Source:HGNC Symbol;Acc:HGNC:894]
ENSCJAG00000004613	KNOWN_BY_PROJECTION	protein_coding	MYOM2	chromosome:C_jacchus3.2.1:13:1:117903854:1	1669914	1770795	D	myomesin 2 [Source:HGNC Symbol;Acc:HGNC:7614]
ENSCJAG00000018005	NOVEL	protein_coding	ENSCJAG00000018005	chromosome:C_jacchus3.2.1:9:1:124281992:1	41211229	41224620	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033254}  [Source:UniProtKB/TrEMBL;Acc:F6QT61]
ENSCJAG00000015351	KNOWN	protein_coding	ERCC8	chromosome:C_jacchus3.2.1:2:1:204313951:1	146552981	146621738	D	DNA excision repair protein ERCC-8 {ECO:0000313|EMBL:JAB11108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051306}  [Source:UniProtKB/TrEMBL;Acc:F7A1I6]
ENSCJAG00000011862	KNOWN_BY_PROJECTION	protein_coding	DRC7	chromosome:C_jacchus3.2.1:20:1:44557958:1	11722357	11757230	D	dynein regulatory complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:25289]
ENSCJAG00000004597	KNOWN_BY_PROJECTION	protein_coding	KBTBD11	chromosome:C_jacchus3.2.1:13:1:117903854:1	1623309	1625354	D	kelch repeat and BTB (POZ) domain containing 11 [Source:HGNC Symbol;Acc:HGNC:29104]
ENSCJAG00000020747	KNOWN_BY_PROJECTION	protein_coding	AQP8	chromosome:C_jacchus3.2.1:12:1:121768101:1	24075084	24090339	D	aquaporin 8 [Source:HGNC Symbol;Acc:HGNC:642]
ENSCJAG00000004569	KNOWN_BY_PROJECTION	protein_coding	ARHGEF10	chromosome:C_jacchus3.2.1:13:1:117903854:1	1518785	1558867	D	Rho guanine nucleotide exchange factor (GEF) 10 [Source:HGNC Symbol;Acc:HGNC:14103]
ENSCJAG00000004564	KNOWN	protein_coding	CLN8	chromosome:C_jacchus3.2.1:13:1:117903854:1	1434447	1456956	D	Protein CLN8 {ECO:0000313|EMBL:JAB04116.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008275}  [Source:UniProtKB/TrEMBL;Acc:F7I8I0]
ENSCJAG00000021091	KNOWN_BY_PROJECTION	protein_coding	OXT	chromosome:C_jacchus3.2.1:5:1:159171411:1	8860318	8861213	D	oxytocin/neurophysin I prepropeptide [Source:HGNC Symbol;Acc:HGNC:8528]
ENSCJAG00000021090	KNOWN	protein_coding	MRPS26	chromosome:C_jacchus3.2.1:5:1:159171411:1	8832421	8834598	D	28S ribosomal protein S26, mitochondrial {ECO:0000313|EMBL:JAB19544.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039247}  [Source:UniProtKB/TrEMBL;Acc:F7FF52]
ENSCJAG00000020740	NOVEL	protein_coding	ENSCJAG00000020740	chromosome:C_jacchus3.2.1:12:1:121768101:1	23946292	23947877	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038577}  [Source:UniProtKB/TrEMBL;Acc:F7I6X4]
ENSCJAG00000020744	NOVEL	pseudogene	ENSCJAG00000020744	chromosome:C_jacchus3.2.1:12:1:121768101:1	23988678	23990410	D	<no descrition>
ENSCJAG00000015375	KNOWN_BY_PROJECTION	protein_coding	NDUFAF2	chromosome:C_jacchus3.2.1:2:1:204313951:1	146319407	146552930	R	NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:28086]
ENSCJAG00000004541	KNOWN_BY_PROJECTION	protein_coding	DLGAP2	chromosome:C_jacchus3.2.1:13:1:117903854:1	1234275	1375782	D	discs, large (Drosophila) homolog-associated protein 2 [Source:HGNC Symbol;Acc:HGNC:2906]
ENSCJAG00000015387	KNOWN_BY_PROJECTION	protein_coding	SMIM15	chromosome:C_jacchus3.2.1:2:1:204313951:1	146310415	146312928	D	small integral membrane protein 15 [Source:HGNC Symbol;Acc:HGNC:33861]
ENSCJAG00000021086	KNOWN_BY_PROJECTION	protein_coding	GNRH2	chromosome:C_jacchus3.2.1:5:1:159171411:1	8830052	8832136	D	gonadotropin-releasing hormone 2 [Source:HGNC Symbol;Acc:HGNC:4420]
ENSCJAG00000015390	NOVEL	protein_coding	ENSCJAG00000015390	chromosome:C_jacchus3.2.1:2:1:204313951:1	146260959	146261713	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028336}  [Source:UniProtKB/TrEMBL;Acc:F7APD2]
ENSCJAG00000015413	NOVEL	protein_coding	ENSCJAG00000015413	chromosome:C_jacchus3.2.1:2:1:204313951:1	146100775	146101728	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028390}  [Source:UniProtKB/TrEMBL;Acc:F6Z5T1]
ENSCJAG00000005077	NOVEL	pseudogene	ENSCJAG00000005077	chromosome:C_jacchus3.2.1:5:1:159171411:1	8748932	8749710	D	<no descrition>
ENSCJAG00000021085	NOVEL	protein_coding	ENSCJAG00000021085	chromosome:C_jacchus3.2.1:5:1:159171411:1	8700606	8702793	R	L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496}  [Source:UniProtKB/TrEMBL;Acc:F7EF52]
ENSCJAG00000011990	NOVEL	pseudogene	ENSCJAG00000011990	chromosome:C_jacchus3.2.1:13:1:117903854:1	925577	925760	D	<no descrition>
ENSCJAG00000011983	KNOWN_BY_PROJECTION	protein_coding	ERICH1	chromosome:C_jacchus3.2.1:13:1:117903854:1	443947	492333	R	glutamate-rich 1 [Source:HGNC Symbol;Acc:HGNC:27234]
ENSCJAG00000011980	NOVEL	pseudogene	ENSCJAG00000011980	chromosome:C_jacchus3.2.1:13:1:117903854:1	406623	406932	R	<no descrition>
ENSCJAG00000011973	NOVEL	pseudogene	ENSCJAG00000011973	chromosome:C_jacchus3.2.1:13:1:117903854:1	381852	382723	D	<no descrition>
ENSCJAG00000011884	KNOWN_BY_PROJECTION	protein_coding	GPR97	chromosome:C_jacchus3.2.1:20:1:44557958:1	11691582	11713498	D	G protein-coupled receptor 97 [Source:HGNC Symbol;Acc:HGNC:13728]
ENSCJAG00000011957	KNOWN	protein_coding	TDRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	279269	348054	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021968}; Uncharacterized protein C8orf42 isoform 1 {ECO:0000313|EMBL:JAB11307.1}  [Source:UniProtKB/TrEMBL;Acc:F6TD44]
ENSCJAG00000011914	KNOWN	protein_coding	FBXO25	chromosome:C_jacchus3.2.1:13:1:117903854:1	197219	261651	D	F-box only protein 25 isoform 2 {ECO:0000313|EMBL:JAB03313.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021931}  [Source:UniProtKB/TrEMBL;Acc:F6PGM8]
ENSCJAG00000019996	KNOWN	protein_coding	GNL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	30915405	30927425	R	Guanine nucleotide-binding protein-like 1 {ECO:0000313|EMBL:JAB09283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037223}  [Source:UniProtKB/TrEMBL;Acc:F6X8Q7]
ENSCJAG00000021075	KNOWN_BY_PROJECTION	protein_coding	PTPRA	chromosome:C_jacchus3.2.1:5:1:159171411:1	8638430	8824744	D	protein tyrosine phosphatase, receptor type, A [Source:HGNC Symbol;Acc:HGNC:9664]
ENSCJAG00000002279	KNOWN_BY_PROJECTION	protein_coding	LRBA	chromosome:C_jacchus3.2.1:3:1:190850796:1	41623092	42407276	D	LPS-responsive vesicle trafficking, beach and anchor containing [Source:HGNC Symbol;Acc:HGNC:1742]
ENSCJAG00000011910	NOVEL	pseudogene	ENSCJAG00000011910	chromosome:C_jacchus3.2.1:13:1:117903854:1	170655	170931	R	<no descrition>
ENSCJAG00000011900	KNOWN_BY_PROJECTION	protein_coding	ZNF596	chromosome:C_jacchus3.2.1:13:1:117903854:1	50668	54998	D	zinc finger protein 596 [Source:HGNC Symbol;Acc:HGNC:27268]
ENSCJAG00000034410	NOVEL	pseudogene	ENSCJAG00000034410	chromosome:C_jacchus3.2.1:13:1:117903854:1	31574	31712	R	<no descrition>
ENSCJAG00000035067	NOVEL	protein_coding	ENSCJAG00000035067	scaffold:C_jacchus3.2.1:GL285479.1:1:26278:1	1408	1856	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051665}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ9]
ENSCJAG00000021065	KNOWN_BY_PROJECTION	protein_coding	VPS16	chromosome:C_jacchus3.2.1:5:1:159171411:1	8624285	8631470	D	vacuolar protein sorting 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:14584]
ENSCJAG00000017210	KNOWN	protein_coding	SLC13A5	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	240977	255600	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031666}  [Source:UniProtKB/TrEMBL;Acc:H9KX93]
ENSCJAG00000015414	NOVEL	protein_coding	ENSCJAG00000015414	chromosome:C_jacchus3.2.1:2:1:204313951:1	146066205	146068031	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028393}  [Source:UniProtKB/TrEMBL;Acc:F6Z5P2]
ENSCJAG00000014707	KNOWN_BY_PROJECTION	protein_coding	C10orf10	scaffold:C_jacchus3.2.1:GL285848.1:1:76306:1	48697	51415	R	chromosome 10 open reading frame 10 [Source:HGNC Symbol;Acc:HGNC:23355]
ENSCJAG00000020010	NOVEL	pseudogene	ENSCJAG00000020010	chromosome:C_jacchus3.2.1:4:1:171630274:1	30906175	30906569	R	<no descrition>
ENSCJAG00000020033	NOVEL	pseudogene	ENSCJAG00000020033	chromosome:C_jacchus3.2.1:4:1:171630274:1	30832104	30832822	D	<no descrition>
ENSCJAG00000014680	KNOWN_BY_PROJECTION	protein_coding	RASSF4	scaffold:C_jacchus3.2.1:GL285848.1:1:76306:1	55087	64169	D	Ras association (RalGDS/AF-6) domain family member 4 [Source:HGNC Symbol;Acc:HGNC:20793]
ENSCJAG00000021056	KNOWN	protein_coding	PCED1A	chromosome:C_jacchus3.2.1:5:1:159171411:1	8600851	8607343	R	PC-esterase domain-containing protein 1A isoform 2 {ECO:0000313|EMBL:JAB05167.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039193}  [Source:UniProtKB/TrEMBL;Acc:F7GV20]
ENSCJAG00000015750	NOVEL	protein_coding	ENSCJAG00000015750	scaffold:C_jacchus3.2.1:GL289923.1:1:9860:1	8638	9540	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028991}  [Source:UniProtKB/TrEMBL;Acc:H9KX59]
ENSCJAG00000015391	KNOWN_BY_PROJECTION	protein_coding	ZSWIM6	chromosome:C_jacchus3.2.1:2:1:204313951:1	145912755	146125802	R	zinc finger, SWIM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:29316]
ENSCJAG00000005084	NOVEL	protein_coding	ENSCJAG00000005084	chromosome:C_jacchus3.2.1:16:1:96796970:1	96719405	96767180	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009293}  [Source:UniProtKB/TrEMBL;Acc:F7EGW5]
ENSCJAG00000015417	NOVEL	protein_coding	ENSCJAG00000015417	chromosome:C_jacchus3.2.1:2:1:204313951:1	145746194	145764277	R	<no descrition>
ENSCJAG00000015420	NOVEL	protein_coding	ENSCJAG00000015420	chromosome:C_jacchus3.2.1:2:1:204313951:1	145594932	145595460	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028398}  [Source:UniProtKB/TrEMBL;Acc:F6Z5I0]
ENSCJAG00000021046	NOVEL	protein_coding	ENSCJAG00000021046	chromosome:C_jacchus3.2.1:5:1:159171411:1	8582582	8585805	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039163}  [Source:UniProtKB/TrEMBL;Acc:F7H081]
ENSCJAG00000002277	NOVEL	pseudogene	ENSCJAG00000002277	chromosome:C_jacchus3.2.1:3:1:190850796:1	41577458	41578691	D	<no descrition>
ENSCJAG00000002268	NOVEL	protein_coding	ENSCJAG00000002268	chromosome:C_jacchus3.2.1:3:1:190850796:1	41519950	41525879	R	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7FTX6]
ENSCJAG00000015501	KNOWN_BY_PROJECTION	protein_coding	MATN2	chromosome:C_jacchus3.2.1:16:1:96796970:1	96518468	96700075	R	matrilin 2 [Source:HGNC Symbol;Acc:HGNC:6908]
ENSCJAG00000004506	KNOWN	protein_coding	USP3	chromosome:C_jacchus3.2.1:10:1:132174527:1	5826669	5913364	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7IAW0]
ENSCJAG00000015549	KNOWN	protein_coding	RPL30	chromosome:C_jacchus3.2.1:16:1:96796970:1	96501270	96504729	D	60S ribosomal protein L30 {ECO:0000313|EMBL:JAB25843.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028634}  [Source:UniProtKB/TrEMBL;Acc:F6WQV8]
ENSCJAG00000015555	KNOWN_BY_PROJECTION	protein_coding	ERICH5	chromosome:C_jacchus3.2.1:16:1:96796970:1	96454521	96485216	R	glutamate-rich 5 [Source:HGNC Symbol;Acc:HGNC:26823]
ENSCJAG00000015560	NOVEL	protein_coding	ENSCJAG00000015560	chromosome:C_jacchus3.2.1:16:1:96796970:1	96426874	96444622	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028654}  [Source:UniProtKB/TrEMBL;Acc:F6VML1]
ENSCJAG00000020729	KNOWN	protein_coding	LCMT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	23916858	24035729	D	Leucine carboxyl methyltransferase 1 isoform a {ECO:0000313|EMBL:JAB08813.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038571}  [Source:UniProtKB/TrEMBL;Acc:F7I6X9]
ENSCJAG00000004487	KNOWN	protein_coding	RAB8B	chromosome:C_jacchus3.2.1:10:1:132174527:1	5578178	5656773	D	Ras-related protein Rab-8B {ECO:0000313|EMBL:JAB02338.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008132}  [Source:UniProtKB/TrEMBL;Acc:F7HU72]
ENSCJAG00000015567	KNOWN_BY_PROJECTION	protein_coding	POP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	96383796	96426772	R	processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30129]
ENSCJAG00000004484	KNOWN	protein_coding	RPS27L	chromosome:C_jacchus3.2.1:10:1:132174527:1	5538269	5543185	R	40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671}  [Source:UniProtKB/TrEMBL;Acc:F7HWT8]
ENSCJAG00000004470	KNOWN_BY_PROJECTION	protein_coding	LACTB	chromosome:C_jacchus3.2.1:10:1:132174527:1	5508393	5528713	D	lactamase, beta [Source:HGNC Symbol;Acc:HGNC:16468]
ENSCJAG00000015585	KNOWN_BY_PROJECTION	protein_coding	NIPAL2	chromosome:C_jacchus3.2.1:16:1:96796970:1	96251810	96349594	D	NIPA-like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25854]
ENSCJAG00000011920	KNOWN	protein_coding	GPR56	chromosome:C_jacchus3.2.1:20:1:44557958:1	11652177	11688547	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021942}  [Source:UniProtKB/TrEMBL;Acc:F6TZI9]
ENSCJAG00000015597	KNOWN	protein_coding	STK3	chromosome:C_jacchus3.2.1:16:1:96796970:1	95715671	96078869	D	Serine/threonine-protein kinase 3 isoform 1 {ECO:0000313|EMBL:JAB02803.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028769}  [Source:UniProtKB/TrEMBL;Acc:F7A3C1]
ENSCJAG00000015595	KNOWN_BY_PROJECTION	protein_coding	KCNS2	chromosome:C_jacchus3.2.1:16:1:96796970:1	96118052	96121839	R	potassium voltage-gated channel, modifier subfamily S, member 2 [Source:HGNC Symbol;Acc:HGNC:6301]
ENSCJAG00000015627	KNOWN	protein_coding	OSR2	chromosome:C_jacchus3.2.1:16:1:96796970:1	95594119	95601728	R	Protein odd-skipped-related 2 isoform a {ECO:0000313|EMBL:JAB01922.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028812}  [Source:UniProtKB/TrEMBL;Acc:F6XZR2]
ENSCJAG00000015719	KNOWN	protein_coding	COX6C	chromosome:C_jacchus3.2.1:16:1:96796970:1	94671047	94689037	D	Cytochrome c oxidase subunit 6C proprotein {ECO:0000313|EMBL:JAB19409.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028926}  [Source:UniProtKB/TrEMBL;Acc:F7CGY6]
ENSCJAG00000017960	NOVEL	protein_coding	ENSCJAG00000017960	chromosome:C_jacchus3.2.1:9:1:124281992:1	41158688	41238265	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033150}  [Source:UniProtKB/TrEMBL;Acc:F6SB13]
ENSCJAG00000015422	KNOWN	protein_coding	KIF2A	chromosome:C_jacchus3.2.1:2:1:204313951:1	144981634	145063958	R	Kinesin-like protein KIF2A isoform 1 {ECO:0000313|EMBL:JAB10384.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028566}  [Source:UniProtKB/TrEMBL;Acc:F6ZMC9]
ENSCJAG00000035588	NOVEL	pseudogene	ENSCJAG00000035588	chromosome:C_jacchus3.2.1:12:1:121768101:1	23802402	23803995	R	<no descrition>
ENSCJAG00000037645	NOVEL	protein_coding	ENSCJAG00000037645	chromosome:C_jacchus3.2.1:9:1:124281992:1	41140876	41179262	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033203}  [Source:UniProtKB/TrEMBL;Acc:F6RCY4]
ENSCJAG00000021048	KNOWN_BY_PROJECTION	protein_coding	CPXM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	8564020	8570393	R	carboxypeptidase X (M14 family), member 1 [Source:HGNC Symbol;Acc:HGNC:15771]
ENSCJAG00000017950	NOVEL	protein_coding	ENSCJAG00000017950	chromosome:C_jacchus3.2.1:9:1:124281992:1	41102415	41176987	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033143}  [Source:UniProtKB/TrEMBL;Acc:F6SKV2]
ENSCJAG00000015527	KNOWN	protein_coding	DIMT1	chromosome:C_jacchus3.2.1:2:1:204313951:1	144962550	144979512	D	Putative dimethyladenosine transferase {ECO:0000313|EMBL:JAB08018.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028638}  [Source:UniProtKB/TrEMBL;Acc:F6W7L4]
ENSCJAG00000015642	KNOWN_BY_PROJECTION	protein_coding	LRRC70	chromosome:C_jacchus3.2.1:2:1:204313951:1	144780443	144783124	R	leucine rich repeat containing 70 [Source:HGNC Symbol;Acc:HGNC:35155]
ENSCJAG00000011956	KNOWN_BY_PROJECTION	protein_coding	GPR114	chromosome:C_jacchus3.2.1:20:1:44557958:1	11580019	11613342	D	G protein-coupled receptor 114 [Source:HGNC Symbol;Acc:HGNC:19010]
ENSCJAG00000011982	KNOWN	protein_coding	CCDC102A	chromosome:C_jacchus3.2.1:20:1:44557958:1	11533294	11556950	R	Coiled-coil domain-containing protein 102A {ECO:0000313|EMBL:JAB04843.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022014}  [Source:UniProtKB/TrEMBL;Acc:F7C9P4]
ENSCJAG00000021027	KNOWN_BY_PROJECTION	protein_coding	EBF4	chromosome:C_jacchus3.2.1:5:1:159171411:1	8489016	8549010	D	early B-cell factor 4 [Source:HGNC Symbol;Acc:HGNC:29278]
ENSCJAG00000015651	KNOWN	protein_coding	VPS13B	chromosome:C_jacchus3.2.1:16:1:96796970:1	94639934	95534367	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028925}; Vacuolar protein sorting-associated protein 13B isoform 5 {ECO:0000313|EMBL:JAB51638.1}  [Source:UniProtKB/TrEMBL;Acc:F7CGZ2]
ENSCJAG00000002215	KNOWN	protein_coding	SH3D19	chromosome:C_jacchus3.2.1:3:1:190850796:1	41390476	41502537	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004045}  [Source:UniProtKB/TrEMBL;Acc:F6Y6U5]
ENSCJAG00000011994	KNOWN	protein_coding	DOK4	chromosome:C_jacchus3.2.1:20:1:44557958:1	11488674	11503788	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022050}  [Source:UniProtKB/TrEMBL;Acc:F7AU51]
ENSCJAG00000021002	KNOWN_BY_PROJECTION	protein_coding	IDH3B	chromosome:C_jacchus3.2.1:5:1:159171411:1	8448077	8453965	R	isocitrate dehydrogenase 3 (NAD+) beta [Source:HGNC Symbol;Acc:HGNC:5385]
ENSCJAG00000020011	KNOWN	protein_coding	CAJA-E	chromosome:C_jacchus3.2.1:4:1:171630274:1	30766252	30871054	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037256}  [Source:UniProtKB/TrEMBL;Acc:F6VIK5]
ENSCJAG00000002204	KNOWN_BY_PROJECTION	protein_coding	PRSS48	chromosome:C_jacchus3.2.1:3:1:190850796:1	41330207	41345014	R	protease, serine, 48 [Source:HGNC Symbol;Acc:HGNC:24635]
ENSCJAG00000002202	NOVEL	protein_coding	ENSCJAG00000002202	chromosome:C_jacchus3.2.1:3:1:190850796:1	41067415	41068924	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003954}  [Source:UniProtKB/TrEMBL;Acc:F7E7E9]
ENSCJAG00000012016	KNOWN_BY_PROJECTION	protein_coding	POLR2C	chromosome:C_jacchus3.2.1:20:1:44557958:1	11480689	11488715	D	polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Source:HGNC Symbol;Acc:HGNC:9189]
ENSCJAG00000017933	KNOWN_BY_PROJECTION	protein_coding	KRT80	chromosome:C_jacchus3.2.1:9:1:124281992:1	41033401	41056908	R	keratin 80 [Source:HGNC Symbol;Acc:HGNC:27056]
ENSCJAG00000002164	KNOWN_BY_PROJECTION	protein_coding	FAM160A1	chromosome:C_jacchus3.2.1:3:1:190850796:1	40920402	41203760	R	family with sequence similarity 160, member A1 [Source:HGNC Symbol;Acc:HGNC:34237]
ENSCJAG00000012043	KNOWN_BY_PROJECTION	protein_coding	COQ9	chromosome:C_jacchus3.2.1:20:1:44557958:1	11461455	11478412	D	coenzyme Q9 [Source:HGNC Symbol;Acc:HGNC:25302]
ENSCJAG00000020669	NOVEL	pseudogene	ENSCJAG00000020669	chromosome:C_jacchus3.2.1:4:1:171630274:1	30749882	30750320	D	<no descrition>
ENSCJAG00000020671	NOVEL	pseudogene	ENSCJAG00000020671	chromosome:C_jacchus3.2.1:4:1:171630274:1	30739694	30740100	D	<no descrition>
ENSCJAG00000020672	NOVEL	protein_coding	ENSCJAG00000020672	chromosome:C_jacchus3.2.1:4:1:171630274:1	30723432	30724389	D	<no descrition>
ENSCJAG00000017929	KNOWN	protein_coding	ATG101	chromosome:C_jacchus3.2.1:9:1:124281992:1	40954012	40964797	D	Autophagy-related protein 101 {ECO:0000313|EMBL:JAB03334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033101}  [Source:UniProtKB/TrEMBL;Acc:F6SXY0]
ENSCJAG00000015721	KNOWN_BY_PROJECTION	protein_coding	RGS22	chromosome:C_jacchus3.2.1:16:1:96796970:1	94483188	94633009	D	regulator of G-protein signaling 22 [Source:HGNC Symbol;Acc:HGNC:24499]
ENSCJAG00000017915	KNOWN	protein_coding	NR4A1	chromosome:C_jacchus3.2.1:9:1:124281992:1	40904800	40943870	D	Nuclear receptor subfamily 4 group A member 1 isoform 2 {ECO:0000313|EMBL:JAB05939.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033081}  [Source:UniProtKB/TrEMBL;Acc:F6TIL9]
ENSCJAG00000020999	KNOWN_BY_PROJECTION	protein_coding	NOP56	chromosome:C_jacchus3.2.1:5:1:159171411:1	8441218	8448070	D	NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]
ENSCJAG00000015760	KNOWN_BY_PROJECTION	protein_coding	FBXO43	chromosome:C_jacchus3.2.1:16:1:96796970:1	94447308	94458533	D	F-box protein 43 [Source:HGNC Symbol;Acc:HGNC:28521]
ENSCJAG00000015766	KNOWN	protein_coding	POLR2K	chromosome:C_jacchus3.2.1:16:1:96796970:1	94439210	94442065	R	DNA-directed RNA polymerases I, II, and III subunit RPABC4 {ECO:0000313|EMBL:JAB22948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044082}  [Source:UniProtKB/TrEMBL;Acc:F7H244]
ENSCJAG00000015559	KNOWN_BY_PROJECTION	protein_coding	IPO11	chromosome:C_jacchus3.2.1:2:1:204313951:1	144730064	144954765	R	importin 11 [Source:HGNC Symbol;Acc:HGNC:20628]
ENSCJAG00000015770	KNOWN_BY_PROJECTION	protein_coding	SPAG1	chromosome:C_jacchus3.2.1:16:1:96796970:1	94358550	94434345	R	sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
ENSCJAG00000012055	KNOWN	protein_coding	CIAPIN1	chromosome:C_jacchus3.2.1:20:1:44557958:1	11443927	11461408	R	Anamorsin {ECO:0000256|HAMAP-Rule:MF_03115}  [Source:UniProtKB/TrEMBL;Acc:F6XN40]
ENSCJAG00000020698	KNOWN	protein_coding	ARHGAP17	chromosome:C_jacchus3.2.1:12:1:121768101:1	23802398	23896201	R	Rho GTPase-activating protein 17 isoform 2 {ECO:0000313|EMBL:JAB10677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038549}  [Source:UniProtKB/TrEMBL;Acc:F7IBJ7]
ENSCJAG00000034877	NOVEL	pseudogene	ENSCJAG00000034877	chromosome:C_jacchus3.2.1:2:1:204313951:1	144723172	144723616	D	<no descrition>
ENSCJAG00000020676	NOVEL	protein_coding	ENSCJAG00000020676	chromosome:C_jacchus3.2.1:4:1:171630274:1	30684970	30687989	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038449}  [Source:UniProtKB/TrEMBL;Acc:F7IT72]
ENSCJAG00000015794	KNOWN_BY_PROJECTION	protein_coding	RNF19A	chromosome:C_jacchus3.2.1:16:1:96796970:1	94297382	94341748	D	ring finger protein 19A, RBR E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:13432]
ENSCJAG00000015644	KNOWN	protein_coding	RNF180	chromosome:C_jacchus3.2.1:2:1:204313951:1	142861814	143098026	R	E3 ubiquitin-protein ligase RNF180 isoform 1 {ECO:0000313|EMBL:JAB21138.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028811}  [Source:UniProtKB/TrEMBL;Acc:F6XZS0]
ENSCJAG00000015816	KNOWN	protein_coding	ANKRD46	chromosome:C_jacchus3.2.1:16:1:96796970:1	94057661	94089948	D	Ankyrin repeat domain-containing protein 46 isoform 1 {ECO:0000313|EMBL:JAB04703.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029134}  [Source:UniProtKB/TrEMBL;Acc:F7ICK9]
ENSCJAG00000015655	KNOWN	protein_coding	RGS7BP	chromosome:C_jacchus3.2.1:2:1:204313951:1	142536747	142667260	R	Regulator of G-protein signaling 7-binding protein isoform 1 {ECO:0000313|EMBL:JAB16902.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028828}  [Source:UniProtKB/TrEMBL;Acc:F6XC06]
ENSCJAG00000020990	KNOWN_BY_PROJECTION	protein_coding	TMC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	8348543	8429191	D	transmembrane channel-like 2 [Source:HGNC Symbol;Acc:HGNC:16527]
ENSCJAG00000015663	KNOWN_BY_PROJECTION	protein_coding	MRPL49	chromosome:C_jacchus3.2.1:2:1:204313951:1	142456100	142456547	R	mitochondrial ribosomal protein L49 [Source:HGNC Symbol;Acc:HGNC:1176]
ENSCJAG00000015820	KNOWN_BY_PROJECTION	protein_coding	SNX31	chromosome:C_jacchus3.2.1:16:1:96796970:1	93963916	94041070	D	sorting nexin 31 [Source:HGNC Symbol;Acc:HGNC:28605]
ENSCJAG00000015667	NOVEL	protein_coding	ENSCJAG00000015667	chromosome:C_jacchus3.2.1:2:1:204313951:1	142428664	142429671	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028834}  [Source:UniProtKB/TrEMBL;Acc:F6XBB6]
ENSCJAG00000015668	KNOWN_BY_PROJECTION	protein_coding	SREK1IP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	142379069	142393578	D	SREK1-interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:26716]
ENSCJAG00000015666	KNOWN_BY_PROJECTION	protein_coding	FAM159B	chromosome:C_jacchus3.2.1:2:1:204313951:1	142415003	142438441	R	family with sequence similarity 159, member B [Source:HGNC Symbol;Acc:HGNC:34236]
ENSCJAG00000012074	KNOWN_BY_PROJECTION	protein_coding	CCL17	chromosome:C_jacchus3.2.1:20:1:44557958:1	11425208	11427474	D	chemokine (C-C motif) ligand 17 [Source:HGNC Symbol;Acc:HGNC:10615]
ENSCJAG00000020984	KNOWN_BY_PROJECTION	protein_coding	ZNF589	chromosome:C_jacchus3.2.1:5:1:159171411:1	8305539	8315876	R	zinc finger protein 589 [Source:HGNC Symbol;Acc:HGNC:16747]
ENSCJAG00000015673	KNOWN	protein_coding	CWC27	chromosome:C_jacchus3.2.1:2:1:204313951:1	142063159	142362945	R	Peptidyl-prolyl cis-trans isomerase CWC27 homolog {ECO:0000313|EMBL:JAB02619.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028891}  [Source:UniProtKB/TrEMBL;Acc:F6W522]
ENSCJAG00000017908	KNOWN_BY_PROJECTION	protein_coding	GRASP	chromosome:C_jacchus3.2.1:9:1:124281992:1	40889539	40898220	D	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
ENSCJAG00000012081	KNOWN	protein_coding	CX3CL1	chromosome:C_jacchus3.2.1:20:1:44557958:1	11388353	11401413	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022194}  [Source:UniProtKB/TrEMBL;Acc:F6VVH2]
ENSCJAG00000012098	KNOWN_BY_PROJECTION	protein_coding	CCL22	chromosome:C_jacchus3.2.1:20:1:44557958:1	11371392	11377848	D	chemokine (C-C motif) ligand 22 [Source:HGNC Symbol;Acc:HGNC:10621]
ENSCJAG00000012103	KNOWN	protein_coding	PLLP	chromosome:C_jacchus3.2.1:20:1:44557958:1	11262751	11289408	R	Plasmolipin {ECO:0000313|EMBL:JAB20505.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050132}  [Source:UniProtKB/TrEMBL;Acc:F7H4F3]
ENSCJAG00000015833	KNOWN	protein_coding	PABPC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	93892641	93912752	D	Polyadenylate-binding protein 1 {ECO:0000313|EMBL:JAB22334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045113}  [Source:UniProtKB/TrEMBL;Acc:F6SLD2]
ENSCJAG00000012116	KNOWN	protein_coding	ARL2BP	chromosome:C_jacchus3.2.1:20:1:44557958:1	11250648	11260356	D	ADP-ribosylation factor-like protein 2-binding protein {ECO:0000313|EMBL:JAB20504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022256}  [Source:UniProtKB/TrEMBL;Acc:F7C9D0]
ENSCJAG00000002147	KNOWN_BY_PROJECTION	protein_coding	GATB	chromosome:C_jacchus3.2.1:3:1:190850796:1	40810863	40911402	D	glutamyl-tRNA(Gln) amidotransferase, subunit B [Source:HGNC Symbol;Acc:HGNC:8849]
ENSCJAG00000020971	NOVEL	protein_coding	ENSCJAG00000020971	chromosome:C_jacchus3.2.1:5:1:159171411:1	8287992	8300563	R	Small nuclear ribonucleoprotein-associated protein {ECO:0000256|PIRNR:PIRNR037187}  [Source:UniProtKB/TrEMBL;Acc:F7F2F8]
ENSCJAG00000004355	KNOWN	protein_coding	TPM1	chromosome:C_jacchus3.2.1:10:1:132174527:1	5429065	5458631	D	Tropomyosin alpha-1 chain isoform 6 {ECO:0000313|EMBL:JAB29743.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008043}  [Source:UniProtKB/TrEMBL;Acc:F6ZAH2]
ENSCJAG00000015844	KNOWN	protein_coding	YWHAZ	chromosome:C_jacchus3.2.1:16:1:96796970:1	93714788	93749978	D	14-3-3 protein zeta/delta {ECO:0000313|EMBL:JAB10119.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029218}  [Source:UniProtKB/TrEMBL;Acc:F7HYF7]
ENSCJAG00000012138	KNOWN	protein_coding	RSPRY1	chromosome:C_jacchus3.2.1:20:1:44557958:1	11190997	11246073	D	RING finger and SPRY domain-containing protein 1 {ECO:0000313|EMBL:JAB15386.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022352}  [Source:UniProtKB/TrEMBL;Acc:F6YSF1]
ENSCJAG00000020690	KNOWN_BY_PROJECTION	protein_coding	SLC5A11	chromosome:C_jacchus3.2.1:12:1:121768101:1	23741685	23793496	D	solute carrier family 5 (sodium/inositol cotransporter), member 11 [Source:HGNC Symbol;Acc:HGNC:23091]
ENSCJAG00000020966	KNOWN_BY_PROJECTION	protein_coding	TGM6	chromosome:C_jacchus3.2.1:5:1:159171411:1	8211242	8256108	D	transglutaminase 6 [Source:HGNC Symbol;Acc:HGNC:16255]
ENSCJAG00000012206	KNOWN	protein_coding	CPNE2	chromosome:C_jacchus3.2.1:20:1:44557958:1	11085180	11144844	D	Copine-2 {ECO:0000313|EMBL:JAB03652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022468}  [Source:UniProtKB/TrEMBL;Acc:F7IQ37]
ENSCJAG00000015872	KNOWN	protein_coding	ZNF706	chromosome:C_jacchus3.2.1:16:1:96796970:1	93465308	93474180	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029237}; Zinc finger protein 706 {ECO:0000313|EMBL:JAB23119.1}  [Source:UniProtKB/TrEMBL;Acc:F7HSE6]
ENSCJAG00000017891	KNOWN	protein_coding	ACVR1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	40837001	40880593	D	Activin receptor type-1B isoform a {ECO:0000313|EMBL:JAB02351.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033050}  [Source:UniProtKB/TrEMBL;Acc:F6TV96]
ENSCJAG00000032446	NOVEL	protein_coding	ENSCJAG00000032446	chromosome:C_jacchus3.2.1:16:1:96796970:1	93309087	93313237	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043789}  [Source:UniProtKB/TrEMBL;Acc:F7IP34]
ENSCJAG00000004352	NOVEL	pseudogene	ENSCJAG00000004352	chromosome:C_jacchus3.2.1:10:1:132174527:1	5406398	5406956	R	<no descrition>
ENSCJAG00000012266	KNOWN_BY_PROJECTION	protein_coding	NLRC5	chromosome:C_jacchus3.2.1:20:1:44557958:1	10959966	11072779	D	NLR family, CARD domain containing 5 [Source:HGNC Symbol;Acc:HGNC:29933]
ENSCJAG00000015886	KNOWN	protein_coding	GRHL2	chromosome:C_jacchus3.2.1:16:1:96796970:1	92996880	93176042	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029283}  [Source:UniProtKB/TrEMBL;Acc:F7IP83]
ENSCJAG00000017879	KNOWN_BY_PROJECTION	protein_coding	ACVRL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	40790488	40805612	D	activin A receptor type II-like 1 [Source:HGNC Symbol;Acc:HGNC:175]
ENSCJAG00000015704	KNOWN_BY_PROJECTION	protein_coding	ADAMTS6	chromosome:C_jacchus3.2.1:2:1:204313951:1	141586244	141924269	D	ADAM metallopeptidase with thrombospondin type 1 motif, 6 [Source:HGNC Symbol;Acc:HGNC:222]
ENSCJAG00000017870	KNOWN_BY_PROJECTION	protein_coding	ANKRD33	chromosome:C_jacchus3.2.1:9:1:124281992:1	40774544	40778557	D	ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
ENSCJAG00000015913	KNOWN	protein_coding	NCALD	chromosome:C_jacchus3.2.1:16:1:96796970:1	92872468	92986667	D	Neurocalcin-delta {ECO:0000313|EMBL:JAB04580.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029308}  [Source:UniProtKB/TrEMBL;Acc:F7IH94]
ENSCJAG00000015759	KNOWN	protein_coding	CENPK	chromosome:C_jacchus3.2.1:2:1:204313951:1	141525807	141562201	D	Centromere protein K {ECO:0000313|EMBL:JAB12308.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029018}  [Source:UniProtKB/TrEMBL;Acc:F7HWB2]
ENSCJAG00000020950	KNOWN_BY_PROJECTION	protein_coding	TGM3	chromosome:C_jacchus3.2.1:5:1:159171411:1	8122458	8170493	D	transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]
ENSCJAG00000015923	KNOWN	protein_coding	RRM2B	chromosome:C_jacchus3.2.1:16:1:96796970:1	92337585	92377898	D	Ribonucleoside-diphosphate reductase subunit M2 B isoform 1 {ECO:0000313|EMBL:JAB02385.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029353}  [Source:UniProtKB/TrEMBL;Acc:F7I7U4]
ENSCJAG00000020681	KNOWN	protein_coding	TRIM39	chromosome:C_jacchus3.2.1:4:1:171630274:1	30630876	30652297	D	E3 ubiquitin-protein ligase TRIM39 isoform 2 {ECO:0000313|EMBL:JAB10843.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038461}  [Source:UniProtKB/TrEMBL;Acc:F7IQT8]
ENSCJAG00000020677	KNOWN_BY_PROJECTION	protein_coding	TNRC6A	chromosome:C_jacchus3.2.1:12:1:121768101:1	23606643	23711521	D	trinucleotide repeat containing 6A [Source:HGNC Symbol;Acc:HGNC:11969]
ENSCJAG00000012189	KNOWN	protein_coding	FAM192A	chromosome:C_jacchus3.2.1:20:1:44557958:1	10957430	11190696	R	Protein FAM192A {ECO:0000313|EMBL:JAB08647.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051622}  [Source:UniProtKB/TrEMBL;Acc:F7AGE5]
ENSCJAG00000015769	KNOWN_BY_PROJECTION	protein_coding	PPWD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	141493899	141516406	R	peptidylprolyl isomerase domain and WD repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:28954]
ENSCJAG00000020949	KNOWN	protein_coding	STK35	chromosome:C_jacchus3.2.1:5:1:159171411:1	7924650	7967113	D	Serine/threonine-protein kinase 35 {ECO:0000313|EMBL:JAB03290.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038973}  [Source:UniProtKB/TrEMBL;Acc:F7IKQ8]
ENSCJAG00000020948	KNOWN_BY_PROJECTION	protein_coding	PDYN	chromosome:C_jacchus3.2.1:5:1:159171411:1	7796179	7810702	R	prodynorphin [Source:HGNC Symbol;Acc:HGNC:8820]
ENSCJAG00000015796	KNOWN	protein_coding	TRIM23	chromosome:C_jacchus3.2.1:2:1:204313951:1	141452367	141491399	D	E3 ubiquitin-protein ligase TRIM23 isoform alpha {ECO:0000313|EMBL:JAB10239.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044678}  [Source:UniProtKB/TrEMBL;Acc:F7HBN0]
ENSCJAG00000020944	NOVEL	protein_coding	ENSCJAG00000020944	chromosome:C_jacchus3.2.1:5:1:159171411:1	7710547	7756244	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038965}  [Source:UniProtKB/TrEMBL;Acc:F7IKT8]
ENSCJAG00000020939	NOVEL	protein_coding	ENSCJAG00000020939	chromosome:C_jacchus3.2.1:5:1:159171411:1	7512892	7528957	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038959}  [Source:UniProtKB/TrEMBL;Acc:F7IN35]
ENSCJAG00000020938	NOVEL	protein_coding	ENSCJAG00000020938	chromosome:C_jacchus3.2.1:5:1:159171411:1	7499597	7505821	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038950}  [Source:UniProtKB/TrEMBL;Acc:F7IN42]
ENSCJAG00000031886	NOVEL	protein_coding	ENSCJAG00000031886	chromosome:C_jacchus3.2.1:5:1:159171411:1	7476192	7476918	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043633}  [Source:UniProtKB/TrEMBL;Acc:F7IA61]
ENSCJAG00000002101	KNOWN	protein_coding	FBXW7	chromosome:C_jacchus3.2.1:3:1:190850796:1	39996261	40228501	D	F-box/WD repeat-containing protein 7 isoform 1 {ECO:0000313|EMBL:JAB08432.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003854}  [Source:UniProtKB/TrEMBL;Acc:F7GTY6]
ENSCJAG00000012329	KNOWN_BY_PROJECTION	protein_coding	CETP	chromosome:C_jacchus3.2.1:20:1:44557958:1	10927941	10954140	D	cholesteryl ester transfer protein, plasma [Source:HGNC Symbol;Acc:HGNC:1869]
ENSCJAG00000015960	KNOWN	protein_coding	UBR5	chromosome:C_jacchus3.2.1:16:1:96796970:1	92210461	92319114	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029563}  [Source:UniProtKB/TrEMBL;Acc:F7I7P2]
ENSCJAG00000004289	KNOWN_BY_PROJECTION	protein_coding	TLN2	chromosome:C_jacchus3.2.1:10:1:132174527:1	4987981	5192368	D	talin 2 [Source:HGNC Symbol;Acc:HGNC:15447]
ENSCJAG00000004285	NOVEL	protein_coding	ENSCJAG00000004285	chromosome:C_jacchus3.2.1:10:1:132174527:1	4856535	4857032	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007751}  [Source:UniProtKB/TrEMBL;Acc:F6XJW6]
ENSCJAG00000020931	KNOWN_BY_PROJECTION	protein_coding	SIRPB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	7424771	7438159	R	signal-regulatory protein beta 2 [Source:HGNC Symbol;Acc:HGNC:16247]
ENSCJAG00000015812	KNOWN	protein_coding	TRAPPC13	chromosome:C_jacchus3.2.1:2:1:204313951:1	141393236	141451724	R	UPF0533 protein C5orf44 isoform 4 {ECO:0000313|EMBL:JAB39074.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029154}  [Source:UniProtKB/TrEMBL;Acc:F7IA82]
ENSCJAG00000020675	NOVEL	protein_coding	ENSCJAG00000020675	chromosome:C_jacchus3.2.1:12:1:121768101:1	23475053	23477022	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038446}  [Source:UniProtKB/TrEMBL;Acc:F7IT74]
ENSCJAG00000002093	KNOWN	protein_coding	TMEM154	chromosome:C_jacchus3.2.1:3:1:190850796:1	39872028	39900457	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003775}  [Source:UniProtKB/TrEMBL;Acc:F7E7U7]
ENSCJAG00000015847	KNOWN	protein_coding	SGTB	chromosome:C_jacchus3.2.1:2:1:204313951:1	141337194	141387909	D	Small glutamine-rich tetratricopeptide repeat-containing protein beta {ECO:0000313|EMBL:JAB09202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029204}  [Source:UniProtKB/TrEMBL;Acc:F7I0S4]
ENSCJAG00000021812	KNOWN_BY_PROJECTION	protein_coding	TIGD4	chromosome:C_jacchus3.2.1:3:1:190850796:1	39747196	39759607	D	tigger transposable element derived 4 [Source:HGNC Symbol;Acc:HGNC:18335]
ENSCJAG00000016066	KNOWN_BY_PROJECTION	protein_coding	ODF1	chromosome:C_jacchus3.2.1:16:1:96796970:1	91978554	91989488	R	outer dense fiber of sperm tails 1 [Source:HGNC Symbol;Acc:HGNC:8113]
ENSCJAG00000002085	NOVEL	protein_coding	ENSCJAG00000002085	chromosome:C_jacchus3.2.1:3:1:190850796:1	39681928	39682886	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003760}  [Source:UniProtKB/TrEMBL;Acc:F7E879]
ENSCJAG00000015893	NOVEL	protein_coding	ENSCJAG00000015893	chromosome:C_jacchus3.2.1:2:1:204313951:1	141190627	141191543	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029255}  [Source:UniProtKB/TrEMBL;Acc:F7HLH1]
ENSCJAG00000020916	KNOWN	protein_coding	NSFL1C	chromosome:C_jacchus3.2.1:5:1:159171411:1	7394913	7562282	R	NSFL1 cofactor p47 isoform a {ECO:0000313|EMBL:JAB05779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038933}  [Source:UniProtKB/TrEMBL;Acc:F7IQI3]
ENSCJAG00000020661	KNOWN	protein_coding	RBBP6	chromosome:C_jacchus3.2.1:12:1:121768101:1	23415183	23447762	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038411}  [Source:UniProtKB/TrEMBL;Acc:F7HV68]
ENSCJAG00000016069	KNOWN	protein_coding	KLF10	chromosome:C_jacchus3.2.1:16:1:96796970:1	91869648	91877377	D	Krueppel-like factor 10 isoform a {ECO:0000313|EMBL:JAB07905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029606}  [Source:UniProtKB/TrEMBL;Acc:F7I0H6]
ENSCJAG00000020693	KNOWN	protein_coding	TRIM26	chromosome:C_jacchus3.2.1:4:1:171630274:1	30514128	30543199	R	Tripartite motif-containing protein 26 {ECO:0000313|EMBL:JAB05064.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038481}  [Source:UniProtKB/TrEMBL;Acc:F7INH8]
ENSCJAG00000016087	KNOWN	protein_coding	AZIN1	chromosome:C_jacchus3.2.1:16:1:96796970:1	91662640	91700992	D	Callithrix jacchus antizyme inhibitor 1 (AZIN1), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001291456]
ENSCJAG00000004271	KNOWN_BY_PROJECTION	protein_coding	C2CD4B	chromosome:C_jacchus3.2.1:10:1:132174527:1	4549922	4551809	R	C2 calcium-dependent domain containing 4B [Source:HGNC Symbol;Acc:HGNC:33628]
ENSCJAG00000020656	KNOWN	protein_coding	CACNG3	chromosome:C_jacchus3.2.1:12:1:121768101:1	23131336	23241495	D	Voltage-dependent calcium channel gamma subunit {ECO:0000256|RuleBase:RU361151}  [Source:UniProtKB/TrEMBL;Acc:F7HXI8]
ENSCJAG00000002029	KNOWN	protein_coding	ARFIP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	39620227	39746995	R	Arfaptin-1 isoform 2 {ECO:0000313|EMBL:JAB06991.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003743}  [Source:UniProtKB/TrEMBL;Acc:F7EKY2]
ENSCJAG00000020699	KNOWN_BY_PROJECTION	protein_coding	TRIM15	chromosome:C_jacchus3.2.1:4:1:171630274:1	30489578	30497870	D	tripartite motif containing 15 [Source:HGNC Symbol;Acc:HGNC:16284]
ENSCJAG00000031847	NOVEL	pseudogene	ENSCJAG00000031847	chromosome:C_jacchus3.2.1:16:1:96796970:1	91567093	91567865	D	<no descrition>
ENSCJAG00000016100	KNOWN	protein_coding	ATP6V1C1	chromosome:C_jacchus3.2.1:16:1:96796970:1	91460003	91506223	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029697}; V-type proton ATPase subunit C 1 {ECO:0000313|EMBL:JAB05075.1}  [Source:UniProtKB/TrEMBL;Acc:F7INY1]
ENSCJAG00000012357	KNOWN	protein_coding	HERPUD1	chromosome:C_jacchus3.2.1:20:1:44557958:1	10899123	10911268	D	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein isoform 1 {ECO:0000313|EMBL:JAB10079.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022769}  [Source:UniProtKB/TrEMBL;Acc:F7I8D0]
ENSCJAG00000002025	NOVEL	protein_coding	ENSCJAG00000002025	chromosome:C_jacchus3.2.1:3:1:190850796:1	39609885	39610884	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003650}  [Source:UniProtKB/TrEMBL;Acc:F7H4L6]
ENSCJAG00000016141	KNOWN	protein_coding	BAALC	chromosome:C_jacchus3.2.1:16:1:96796970:1	91284054	91386545	R	Brain and acute leukemia cytoplasmic protein isoform 1 {ECO:0000313|EMBL:JAB45894.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029712}  [Source:UniProtKB/TrEMBL;Acc:F7IC33]
ENSCJAG00000016150	KNOWN_BY_PROJECTION	protein_coding	FZD6	chromosome:C_jacchus3.2.1:16:1:96796970:1	91184464	91213639	R	frizzled class receptor 6 [Source:HGNC Symbol;Acc:HGNC:4044]
ENSCJAG00000015865	KNOWN_BY_PROJECTION	protein_coding	NLN	chromosome:C_jacchus3.2.1:2:1:204313951:1	141188298	141337068	R	neurolysin (metallopeptidase M3 family) [Source:HGNC Symbol;Acc:HGNC:16058]
ENSCJAG00000020908	KNOWN	protein_coding	FKBP1A	chromosome:C_jacchus3.2.1:5:1:159171411:1	7311544	7332637	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}  [Source:UniProtKB/TrEMBL;Acc:F7HPG5]
ENSCJAG00000017798	KNOWN	protein_coding	SCN8A	chromosome:C_jacchus3.2.1:9:1:124281992:1	40554071	40689206	D	Sodium channel protein {ECO:0000256|RuleBase:RU361132}  [Source:UniProtKB/TrEMBL;Acc:F7GQB4]
ENSCJAG00000016167	KNOWN	protein_coding	CTHRC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	91133480	91144807	R	Collagen triple helix repeat-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB41878.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029753}  [Source:UniProtKB/TrEMBL;Acc:F7I7F1]
ENSCJAG00000016172	KNOWN	protein_coding	SLC25A32	chromosome:C_jacchus3.2.1:16:1:96796970:1	91107925	91122134	D	Mitochondrial folate transporter/carrier {ECO:0000313|EMBL:JAB05213.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029776}  [Source:UniProtKB/TrEMBL;Acc:F7I546]
ENSCJAG00000015895	KNOWN_BY_PROJECTION	protein_coding	ERBB2IP	chromosome:C_jacchus3.2.1:2:1:204313951:1	140998598	141137257	R	erbb2 interacting protein [Source:HGNC Symbol;Acc:HGNC:15842]
ENSCJAG00000012443	KNOWN_BY_PROJECTION	protein_coding	SLC12A3	chromosome:C_jacchus3.2.1:20:1:44557958:1	10833732	10881426	D	solute carrier family 12 (sodium/chloride transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:10912]
ENSCJAG00000002017	KNOWN_BY_PROJECTION	protein_coding	FHDC1	chromosome:C_jacchus3.2.1:3:1:190850796:1	39545878	39581350	R	FH2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29363]
ENSCJAG00000002016	NOVEL	pseudogene	ENSCJAG00000002016	chromosome:C_jacchus3.2.1:3:1:190850796:1	39463636	39464526	R	<no descrition>
ENSCJAG00000008638	NOVEL	protein_coding	ENSCJAG00000008638	chromosome:C_jacchus3.2.1:3:1:190850796:1	39378226	39379998	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045196}  [Source:UniProtKB/TrEMBL;Acc:F6RNR8]
ENSCJAG00000016181	KNOWN_BY_PROJECTION	protein_coding	DCAF13	chromosome:C_jacchus3.2.1:16:1:96796970:1	91079729	91107910	R	DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:HGNC:24535]
ENSCJAG00000002012	NOVEL	protein_coding	ENSCJAG00000002012	chromosome:C_jacchus3.2.1:3:1:190850796:1	39186293	39187280	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003629}  [Source:UniProtKB/TrEMBL;Acc:F7H9W2]
ENSCJAG00000002004	KNOWN	protein_coding	TRIM2	chromosome:C_jacchus3.2.1:3:1:190850796:1	39157953	39363652	R	Tripartite motif-containing protein 2  [Source:UniProtKB/Swiss-Prot;Acc:F7H9X2]
ENSCJAG00000016212	NOVEL	protein_coding	ENSCJAG00000016212	chromosome:C_jacchus3.2.1:16:1:96796970:1	90559133	90743896	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029869}  [Source:UniProtKB/TrEMBL;Acc:F7IR72]
ENSCJAG00000020701	KNOWN_BY_PROJECTION	protein_coding	TRIM10	chromosome:C_jacchus3.2.1:4:1:171630274:1	30478612	30487723	R	tripartite motif containing 10 [Source:HGNC Symbol;Acc:HGNC:10072]
ENSCJAG00000020901	KNOWN_BY_PROJECTION	protein_coding	SDCBP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	7217587	7233004	R	syndecan binding protein (syntenin) 2 [Source:HGNC Symbol;Acc:HGNC:15756]
ENSCJAG00000020643	KNOWN	protein_coding	PRKCB	chromosome:C_jacchus3.2.1:12:1:121768101:1	22700757	23099182	D	Protein kinase C {ECO:0000256|PIRNR:PIRNR000550}  [Source:UniProtKB/TrEMBL;Acc:F7I4L6]
ENSCJAG00000006727	NOVEL	protein_coding	ENSCJAG00000006727	chromosome:C_jacchus3.2.1:16:1:96796970:1	90426290	90508286	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012419}  [Source:UniProtKB/TrEMBL;Acc:F7FPA9]
ENSCJAG00000006725	KNOWN_BY_PROJECTION	protein_coding	RIMS2	chromosome:C_jacchus3.2.1:16:1:96796970:1	90327935	90334857	R	regulating synaptic membrane exocytosis 2 [Source:HGNC Symbol;Acc:HGNC:17283]
ENSCJAG00000020899	KNOWN_BY_PROJECTION	protein_coding	SNPH	chromosome:C_jacchus3.2.1:5:1:159171411:1	7203133	7213324	D	syntaphilin [Source:HGNC Symbol;Acc:HGNC:15931]
ENSCJAG00000006716	KNOWN_BY_PROJECTION	protein_coding	DCSTAMP	chromosome:C_jacchus3.2.1:16:1:96796970:1	90230568	90247341	R	dendrocyte expressed seven transmembrane protein [Source:HGNC Symbol;Acc:HGNC:18549]
ENSCJAG00000006714	NOVEL	pseudogene	ENSCJAG00000006714	chromosome:C_jacchus3.2.1:16:1:96796970:1	90202435	90203333	D	<no descrition>
ENSCJAG00000006703	KNOWN_BY_PROJECTION	protein_coding	DPYS	chromosome:C_jacchus3.2.1:16:1:96796970:1	90123215	90195080	D	dihydropyrimidinase [Source:HGNC Symbol;Acc:HGNC:3013]
ENSCJAG00000020893	KNOWN_BY_PROJECTION	protein_coding	RAD21L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	7114831	7157817	D	RAD21-like 1 (S. pombe) [Source:HGNC Symbol;Acc:HGNC:16271]
ENSCJAG00000020702	KNOWN_BY_PROJECTION	protein_coding	TRIM40	chromosome:C_jacchus3.2.1:4:1:171630274:1	30459454	30475991	D	tripartite motif containing 40 [Source:HGNC Symbol;Acc:HGNC:18736]
ENSCJAG00000001993	NOVEL	protein_coding	ENSCJAG00000001993	chromosome:C_jacchus3.2.1:3:1:190850796:1	39098686	39149204	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003606}  [Source:UniProtKB/TrEMBL;Acc:F7HA07]
ENSCJAG00000006679	KNOWN_BY_PROJECTION	protein_coding	LRP12	chromosome:C_jacchus3.2.1:16:1:96796970:1	89998617	90096399	D	low density lipoprotein receptor-related protein 12 [Source:HGNC Symbol;Acc:HGNC:31708]
ENSCJAG00000020636	KNOWN_BY_PROJECTION	protein_coding	CHP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	22629352	22633652	D	calcineurin-like EF-hand protein 2 [Source:HGNC Symbol;Acc:HGNC:24927]
ENSCJAG00000033581	NOVEL	protein_coding	ENSCJAG00000033581	chromosome:C_jacchus3.2.1:16:1:96796970:1	89566341	89566729	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050050}  [Source:UniProtKB/TrEMBL;Acc:F7FDA1]
ENSCJAG00000006676	NOVEL	pseudogene	ENSCJAG00000006676	chromosome:C_jacchus3.2.1:16:1:96796970:1	88853016	88853424	D	<no descrition>
ENSCJAG00000012507	KNOWN	protein_coding	NUP93	chromosome:C_jacchus3.2.1:20:1:44557958:1	10699369	10812006	D	Nuclear pore complex protein Nup93 isoform 1 {ECO:0000313|EMBL:JAB02738.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023034}  [Source:UniProtKB/TrEMBL;Acc:F7IG47]
ENSCJAG00000020706	KNOWN_BY_PROJECTION	protein_coding	RNF39	chromosome:C_jacchus3.2.1:4:1:171630274:1	30377007	30382615	R	ring finger protein 39 [Source:HGNC Symbol;Acc:HGNC:18064]
ENSCJAG00000006642	KNOWN_BY_PROJECTION	protein_coding	ZFPM2	chromosome:C_jacchus3.2.1:16:1:96796970:1	88775882	89265758	R	zinc finger protein, FOG family member 2 [Source:HGNC Symbol;Acc:HGNC:16700]
ENSCJAG00000020892	KNOWN	protein_coding	C20ORF202	chromosome:C_jacchus3.2.1:5:1:159171411:1	7098753	7102805	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038861}; Uncharacterized protein C20orf202 {ECO:0000313|EMBL:JAB51269.1}  [Source:UniProtKB/TrEMBL;Acc:F7HZP5]
ENSCJAG00000020632	KNOWN_BY_PROJECTION	protein_coding	ERN2	chromosome:C_jacchus3.2.1:12:1:121768101:1	22570993	22595408	R	endoplasmic reticulum to nucleus signaling 2 [Source:HGNC Symbol;Acc:HGNC:16942]
ENSCJAG00000020890	KNOWN_BY_PROJECTION	protein_coding	TMEM74B	chromosome:C_jacchus3.2.1:5:1:159171411:1	7076769	7080421	R	transmembrane protein 74B [Source:HGNC Symbol;Acc:HGNC:15893]
ENSCJAG00000035527	NOVEL	protein_coding	ENSCJAG00000035527	chromosome:C_jacchus3.2.1:20:1:44557958:1	10655861	10657481	D	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:F7IJ52]
ENSCJAG00000020889	NOVEL	pseudogene	ENSCJAG00000020889	chromosome:C_jacchus3.2.1:5:1:159171411:1	7055754	7056764	D	<no descrition>
ENSCJAG00000012591	KNOWN_BY_PROJECTION	protein_coding	MT1X	chromosome:C_jacchus3.2.1:20:1:44557958:1	10645555	10657381	D	metallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]
ENSCJAG00000006636	NOVEL	protein_coding	ENSCJAG00000006636	chromosome:C_jacchus3.2.1:16:1:96796970:1	88482118	88483649	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012248}  [Source:UniProtKB/TrEMBL;Acc:F7GMY1]
ENSCJAG00000012627	NOVEL	pseudogene	ENSCJAG00000012627	chromosome:C_jacchus3.2.1:20:1:44557958:1	10586646	10587825	R	<no descrition>
ENSCJAG00000035823	NOVEL	protein_coding	ENSCJAG00000035823	chromosome:C_jacchus3.2.1:20:1:44557958:1	10546979	10643872	D	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:F7HUQ1]
ENSCJAG00000015950	KNOWN_BY_PROJECTION	protein_coding	SREK1	chromosome:C_jacchus3.2.1:2:1:204313951:1	140891516	140929996	R	splicing regulatory glutamine/lysine-rich protein 1 [Source:HGNC Symbol;Acc:HGNC:17882]
ENSCJAG00000020886	KNOWN_BY_PROJECTION	protein_coding	PSMF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	7007122	7063704	D	proteasome (prosome, macropain) inhibitor subunit 1 (PI31) [Source:HGNC Symbol;Acc:HGNC:9571]
ENSCJAG00000020885	KNOWN_BY_PROJECTION	protein_coding	RSPO4	chromosome:C_jacchus3.2.1:5:1:159171411:1	6878769	6913601	R	R-spondin 4 [Source:HGNC Symbol;Acc:HGNC:16175]
ENSCJAG00000035397	NOVEL	protein_coding	ENSCJAG00000035397	chromosome:C_jacchus3.2.1:2:1:204313951:1	140880134	140880538	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011547}  [Source:UniProtKB/TrEMBL;Acc:F7IB00]
ENSCJAG00000020879	KNOWN_BY_PROJECTION	protein_coding	ANGPT4	chromosome:C_jacchus3.2.1:5:1:159171411:1	6806081	6845885	R	angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
ENSCJAG00000020710	KNOWN	protein_coding	PPP1R11	chromosome:C_jacchus3.2.1:4:1:171630274:1	30373912	30377073	D	Protein phosphatase 1 regulatory subunit 11 {ECO:0000313|EMBL:JAB15258.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038528}  [Source:UniProtKB/TrEMBL;Acc:F7IDX6]
ENSCJAG00000006571	KNOWN	protein_coding	OXR1	chromosome:C_jacchus3.2.1:16:1:96796970:1	87869951	88368636	R	Oxidation resistance protein 1 isoform 6 {ECO:0000313|EMBL:JAB16314.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049746}  [Source:UniProtKB/TrEMBL;Acc:F6UQW6]
ENSCJAG00000015992	NOVEL	protein_coding	ENSCJAG00000015992	chromosome:C_jacchus3.2.1:2:1:204313951:1	139981149	140446671	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029436}  [Source:UniProtKB/TrEMBL;Acc:F7HS47]
ENSCJAG00000033226	NOVEL	protein_coding	ENSCJAG00000033226	chromosome:C_jacchus3.2.1:2:1:204313951:1	139858189	139883655	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045324}  [Source:UniProtKB/TrEMBL;Acc:F6THD7]
ENSCJAG00000017737	KNOWN	protein_coding	SLC4A8	chromosome:C_jacchus3.2.1:9:1:124281992:1	40258258	40382608	D	Electroneutral sodium bicarbonate exchanger 1 isoform a {ECO:0000313|EMBL:JAB14221.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032812}  [Source:UniProtKB/TrEMBL;Acc:F7EQN7]
ENSCJAG00000012662	NOVEL	protein_coding	ENSCJAG00000012662	chromosome:C_jacchus3.2.1:20:1:44557958:1	10527135	10604589	D	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:F6V4M1]
ENSCJAG00000020719	NOVEL	protein_coding	ZNRD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	30367402	30370750	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048528}  [Source:UniProtKB/TrEMBL;Acc:F7G0Q7]
ENSCJAG00000020876	KNOWN	protein_coding	FAM110A	chromosome:C_jacchus3.2.1:5:1:159171411:1	6770078	6782259	D	Protein FAM110A {ECO:0000313|EMBL:JAB26274.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038841}  [Source:UniProtKB/TrEMBL;Acc:F7I204]
ENSCJAG00000012668	KNOWN	protein_coding	MT3	chromosome:C_jacchus3.2.1:20:1:44557958:1	10526693	10528389	D	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:F7ISN2]
ENSCJAG00000020873	KNOWN	protein_coding	SLC52A3	chromosome:C_jacchus3.2.1:5:1:159171411:1	6716101	6722972	R	Solute carrier family 52, riboflavin transporter, member 3 {ECO:0000313|EMBL:JAB13112.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038836}  [Source:UniProtKB/TrEMBL;Acc:F7I496]
ENSCJAG00000015994	NOVEL	protein_coding	ENSCJAG00000015994	chromosome:C_jacchus3.2.1:2:1:204313951:1	139856155	140031069	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029442}  [Source:UniProtKB/TrEMBL;Acc:F7HRV8]
ENSCJAG00000020870	KNOWN_BY_PROJECTION	protein_coding	SCRT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	6608881	6621574	R	scratch family zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:15952]
ENSCJAG00000012675	KNOWN_BY_PROJECTION	protein_coding	MT4	chromosome:C_jacchus3.2.1:20:1:44557958:1	10512439	10515888	D	metallothionein 4 [Source:HGNC Symbol;Acc:HGNC:18705]
ENSCJAG00000020869	KNOWN_BY_PROJECTION	protein_coding	SRXN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	6592223	6596639	R	sulfiredoxin 1 [Source:HGNC Symbol;Acc:HGNC:16132]
ENSCJAG00000015999	KNOWN_BY_PROJECTION	protein_coding	CD180	chromosome:C_jacchus3.2.1:2:1:204313951:1	139832923	139848563	D	CD180 molecule [Source:HGNC Symbol;Acc:HGNC:6726]
ENSCJAG00000012676	NOVEL	pseudogene	ENSCJAG00000012676	chromosome:C_jacchus3.2.1:20:1:44557958:1	10477452	10477860	D	<no descrition>
ENSCJAG00000037200	NOVEL	protein_coding	ENSCJAG00000037200	chromosome:C_jacchus3.2.1:5:1:159171411:1	6591274	6591862	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052242}  [Source:UniProtKB/TrEMBL;Acc:F7IJ69]
ENSCJAG00000016004	NOVEL	protein_coding	ENSCJAG00000016004	chromosome:C_jacchus3.2.1:2:1:204313951:1	139166584	139168288	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029451}  [Source:UniProtKB/TrEMBL;Acc:F7HL91]
ENSCJAG00000012664	NOVEL	protein_coding	ENSCJAG00000012664	chromosome:C_jacchus3.2.1:20:1:44557958:1	10433334	10436170	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023195}  [Source:UniProtKB/TrEMBL;Acc:F7HUM7]
ENSCJAG00000020866	KNOWN_BY_PROJECTION	protein_coding	TCF15	chromosome:C_jacchus3.2.1:5:1:159171411:1	6542042	6549108	R	transcription factor 15 (basic helix-loop-helix) [Source:HGNC Symbol;Acc:HGNC:11627]
ENSCJAG00000006567	KNOWN	protein_coding	ABRA	chromosome:C_jacchus3.2.1:16:1:96796970:1	87850876	87862496	D	Actin-binding Rho-activating protein {ECO:0000313|EMBL:JAB40706.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012113}  [Source:UniProtKB/TrEMBL;Acc:F7EJD9]
ENSCJAG00000023213	NOVEL	pseudogene	ENSCJAG00000023213	chromosome:C_jacchus3.2.1:16:1:96796970:1	87706962	87708035	D	<no descrition>
ENSCJAG00000032513	NOVEL	pseudogene	ENSCJAG00000032513	chromosome:C_jacchus3.2.1:16:1:96796970:1	87408440	87409314	D	<no descrition>
ENSCJAG00000020626	KNOWN	protein_coding	PLK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	22558250	22570596	D	Serine/threonine-protein kinase PLK {ECO:0000256|RuleBase:RU361162}  [Source:UniProtKB/TrEMBL;Acc:F7I711]
ENSCJAG00000012681	KNOWN_BY_PROJECTION	protein_coding	BBS2	chromosome:C_jacchus3.2.1:20:1:44557958:1	10429719	10468834	R	Bardet-Biedl syndrome 2 [Source:HGNC Symbol;Acc:HGNC:967]
ENSCJAG00000032474	NOVEL	protein_coding	ENSCJAG00000032474	chromosome:C_jacchus3.2.1:4:1:171630274:1	30144179	30201888	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038306}  [Source:UniProtKB/TrEMBL;Acc:F7IE31]
ENSCJAG00000006522	KNOWN	protein_coding	ANGPT1	chromosome:C_jacchus3.2.1:16:1:96796970:1	87073676	87334861	D	Angiopoietin-1 isoform 1 {ECO:0000313|EMBL:JAB20109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012104}  [Source:UniProtKB/TrEMBL;Acc:F7EJK0]
ENSCJAG00000012630	KNOWN_BY_PROJECTION	protein_coding	OGFOD1	chromosome:C_jacchus3.2.1:20:1:44557958:1	10397170	10421878	D	2-oxoglutarate and iron-dependent oxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25585]
ENSCJAG00000006515	KNOWN	protein_coding	RSPO2	chromosome:C_jacchus3.2.1:16:1:96796970:1	86505373	86691067	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012029}  [Source:UniProtKB/TrEMBL;Acc:F7H955]
ENSCJAG00000037448	NOVEL	protein_coding	ENSCJAG00000037448	chromosome:C_jacchus3.2.1:4:1:171630274:1	30108242	30146962	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048717}  [Source:UniProtKB/TrEMBL;Acc:F6R571]
ENSCJAG00000012724	KNOWN	protein_coding	NUDT21	chromosome:C_jacchus3.2.1:20:1:44557958:1	10366722	10396911	R	Cleavage and polyadenylation specificity factor subunit 5 {ECO:0000313|EMBL:JAB07305.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023325}  [Source:UniProtKB/TrEMBL;Acc:F7I8U3]
ENSCJAG00000012741	KNOWN	protein_coding	AMFR	chromosome:C_jacchus3.2.1:20:1:44557958:1	10306639	10371279	R	E3 ubiquitin-protein ligase AMFR {ECO:0000313|EMBL:JAB08774.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023381}  [Source:UniProtKB/TrEMBL;Acc:F7HZC2]
ENSCJAG00000006458	KNOWN	protein_coding	EIF3E	chromosome:C_jacchus3.2.1:16:1:96796970:1	86332862	86385735	D	Eukaryotic translation initiation factor 3 subunit E {ECO:0000256|HAMAP-Rule:MF_03004}  [Source:UniProtKB/TrEMBL;Acc:F7HEG0]
ENSCJAG00000016007	KNOWN	protein_coding	PIK3R1	chromosome:C_jacchus3.2.1:2:1:204313951:1	138763978	138846806	R	Phosphatidylinositol 3-kinase regulatory subunit alpha isoform 1 {ECO:0000313|EMBL:JAB07928.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029505}  [Source:UniProtKB/TrEMBL;Acc:F7IJE6]
ENSCJAG00000001931	KNOWN_BY_PROJECTION	protein_coding	KIAA0922	chromosome:C_jacchus3.2.1:3:1:190850796:1	38834247	39030402	R	KIAA0922 [Source:HGNC Symbol;Acc:HGNC:29146]
ENSCJAG00000012765	KNOWN	protein_coding	GNAO1	chromosome:C_jacchus3.2.1:20:1:44557958:1	10130379	10301888	D	Guanine nucleotide-binding protein G(O) subunit alpha isoform a {ECO:0000313|EMBL:JAB18332.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023411}  [Source:UniProtKB/TrEMBL;Acc:F7HNP2]
ENSCJAG00000035189	NOVEL	protein_coding	ENSCJAG00000035189	chromosome:C_jacchus3.2.1:2:1:204313951:1	138253724	138254446	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F6UWL6]
ENSCJAG00000006437	KNOWN	protein_coding	EMC2	chromosome:C_jacchus3.2.1:16:1:96796970:1	86069363	86134731	R	ER membrane protein complex subunit 2 {ECO:0000313|EMBL:JAB06398.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011885}  [Source:UniProtKB/TrEMBL;Acc:F7H7M1]
ENSCJAG00000020623	KNOWN	protein_coding	DCTN5	chromosome:C_jacchus3.2.1:12:1:121768101:1	22529693	22546779	D	Dynactin subunit 5 isoform 1 {ECO:0000313|EMBL:JAB02055.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038338}  [Source:UniProtKB/TrEMBL;Acc:F7I9E3]
ENSCJAG00000006433	KNOWN_BY_PROJECTION	protein_coding	TRHR	chromosome:C_jacchus3.2.1:16:1:96796970:1	85450014	85482147	R	thyrotropin-releasing hormone receptor [Source:HGNC Symbol;Acc:HGNC:12299]
ENSCJAG00000023212	KNOWN	protein_coding	TMEM74	chromosome:C_jacchus3.2.1:16:1:96796970:1	85761033	85765388	D	Transmembrane protein 74 {ECO:0000313|EMBL:JAB13333.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041726}  [Source:UniProtKB/TrEMBL;Acc:F7GPC6]
ENSCJAG00000006407	KNOWN	protein_coding	NUDCD1	chromosome:C_jacchus3.2.1:16:1:96796970:1	85251791	85325893	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011843}  [Source:UniProtKB/TrEMBL;Acc:F7D4U8]
ENSCJAG00000017712	KNOWN	protein_coding	GALNT6	chromosome:C_jacchus3.2.1:9:1:124281992:1	40210140	40244511	R	Polypeptide N-acetylgalactosaminyltransferase 6 {ECO:0000313|EMBL:JAB14780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036743}  [Source:UniProtKB/TrEMBL;Acc:F6R4R7]
ENSCJAG00000020853	KNOWN	protein_coding	CSNK2A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	6399177	6471870	R	Casein kinase II subunit alpha isoform a {ECO:0000313|EMBL:JAB09587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038816}  [Source:UniProtKB/TrEMBL;Acc:F7I6N8]
ENSCJAG00000006389	KNOWN	protein_coding	ENY2	chromosome:C_jacchus3.2.1:16:1:96796970:1	85242189	85315462	R	Transcription and mRNA export factor ENY2 {ECO:0000256|HAMAP-Rule:MF_03046}  [Source:UniProtKB/TrEMBL;Acc:F7F8G9]
ENSCJAG00000004265	KNOWN_BY_PROJECTION	protein_coding	GABBR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	30054041	30079786	R	gamma-aminobutyric acid (GABA) B receptor, 1 [Source:HGNC Symbol;Acc:HGNC:4070]
ENSCJAG00000031361	NOVEL	protein_coding	ENSCJAG00000031361	chromosome:C_jacchus3.2.1:3:1:190850796:1	38770652	38770937	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052140}  [Source:UniProtKB/TrEMBL;Acc:F7I0D9]
ENSCJAG00000021811	KNOWN	protein_coding	TLR2	chromosome:C_jacchus3.2.1:3:1:190850796:1	38790897	38795099	R	Toll-like receptor {ECO:0000256|PIRNR:PIRNR037595}  [Source:UniProtKB/TrEMBL;Acc:F7HQL3]
ENSCJAG00000001923	KNOWN_BY_PROJECTION	protein_coding	RNF175	chromosome:C_jacchus3.2.1:3:1:190850796:1	38736672	38786702	D	ring finger protein 175 [Source:HGNC Symbol;Acc:HGNC:27735]
ENSCJAG00000004262	KNOWN_BY_PROJECTION	protein_coding	OR2H2	chromosome:C_jacchus3.2.1:4:1:171630274:1	30037415	30038572	D	olfactory receptor, family 2, subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:8253]
ENSCJAG00000006248	KNOWN	protein_coding	EBAG9	chromosome:C_jacchus3.2.1:16:1:96796970:1	85031024	85057697	R	Receptor-binding cancer antigen expressed on SiSo cells {ECO:0000313|EMBL:JAB04881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011549}  [Source:UniProtKB/TrEMBL;Acc:F7IAZ8]
ENSCJAG00000017706	KNOWN_BY_PROJECTION	protein_coding	CELA1	chromosome:C_jacchus3.2.1:9:1:124281992:1	40174320	40205326	R	chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:HGNC:3308]
ENSCJAG00000020847	KNOWN	protein_coding	TBC1D20	chromosome:C_jacchus3.2.1:5:1:159171411:1	6360908	6382633	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038786}  [Source:UniProtKB/TrEMBL;Acc:F7IDR5]
ENSCJAG00000001920	KNOWN	protein_coding	SFRP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	38714714	38723437	D	Secreted frizzled-related protein 2 {ECO:0000313|EMBL:JAB02981.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047561}  [Source:UniProtKB/TrEMBL;Acc:F7E410]
ENSCJAG00000031237	NOVEL	protein_coding	ENSCJAG00000031237	chromosome:C_jacchus3.2.1:3:1:190850796:1	38263986	38264421	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045714}  [Source:UniProtKB/TrEMBL;Acc:F6TE68]
ENSCJAG00000012778	KNOWN_BY_PROJECTION	protein_coding	CES5A	chromosome:C_jacchus3.2.1:20:1:44557958:1	9783644	9804765	R	carboxylesterase 5A [Source:HGNC Symbol;Acc:HGNC:26459]
ENSCJAG00000016039	KNOWN_BY_PROJECTION	protein_coding	SLC30A5	chromosome:C_jacchus3.2.1:2:1:204313951:1	137911539	138059614	R	solute carrier family 30 (zinc transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:19089]
ENSCJAG00000020619	KNOWN_BY_PROJECTION	protein_coding	PALB2	chromosome:C_jacchus3.2.1:12:1:121768101:1	22489477	22529581	R	partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:HGNC:26144]
ENSCJAG00000020614	NOVEL	protein_coding	ENSCJAG00000020614	chromosome:C_jacchus3.2.1:12:1:121768101:1	22446863	22456519	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038314}  [Source:UniProtKB/TrEMBL;Acc:F7IBT0]
ENSCJAG00000020616	KNOWN_BY_PROJECTION	protein_coding	NDUFAB1	chromosome:C_jacchus3.2.1:12:1:121768101:1	22475551	22486317	R	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa [Source:HGNC Symbol;Acc:HGNC:7694]
ENSCJAG00000012792	KNOWN_BY_PROJECTION	protein_coding	CES1	chromosome:C_jacchus3.2.1:20:1:44557958:1	9739843	9771359	R	carboxylesterase 1 [Source:HGNC Symbol;Acc:HGNC:1863]
ENSCJAG00000012827	NOVEL	protein_coding	ENSCJAG00000012827	chromosome:C_jacchus3.2.1:20:1:44557958:1	9702652	9728955	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023494}  [Source:UniProtKB/TrEMBL;Acc:F7II20]
ENSCJAG00000020611	KNOWN_BY_PROJECTION	protein_coding	EARS2	chromosome:C_jacchus3.2.1:12:1:121768101:1	22410585	22443480	R	glutamyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:29419]
ENSCJAG00000006282	KNOWN_BY_PROJECTION	protein_coding	PKHD1L1	chromosome:C_jacchus3.2.1:16:1:96796970:1	84931029	85226224	R	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 [Source:HGNC Symbol;Acc:HGNC:20313]
ENSCJAG00000016075	KNOWN	protein_coding	CCNB1	chromosome:C_jacchus3.2.1:2:1:204313951:1	137871007	137882166	R	G2/mitotic-specific cyclin-B1 {ECO:0000313|EMBL:JAB04879.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029609}  [Source:UniProtKB/TrEMBL;Acc:F7I0H3]
ENSCJAG00000001905	KNOWN_BY_PROJECTION	protein_coding	DCHS2	chromosome:C_jacchus3.2.1:3:1:190850796:1	37993150	38253466	D	dachsous cadherin-related 2 [Source:HGNC Symbol;Acc:HGNC:23111]
ENSCJAG00000017655	KNOWN	protein_coding	DUSP22	chromosome:C_jacchus3.2.1:4:1:171630274:1	28914880	28973133	R	Dual specificity protein phosphatase 22 {ECO:0000313|EMBL:JAB04799.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032524}  [Source:UniProtKB/TrEMBL;Acc:F7GW29]
ENSCJAG00000019524	KNOWN_BY_PROJECTION	protein_coding	IRF4	chromosome:C_jacchus3.2.1:4:1:171630274:1	28850142	28864247	R	interferon regulatory factor 4 [Source:HGNC Symbol;Acc:HGNC:6119]
ENSCJAG00000035417	NOVEL	protein_coding	ENSCJAG00000035417	chromosome:C_jacchus3.2.1:4:1:171630274:1	28885871	28888433	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038697}  [Source:UniProtKB/TrEMBL;Acc:F7ISY8]
ENSCJAG00000020846	KNOWN	protein_coding	RBCK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	6325928	6353458	D	RanBP-type and C3HC4-type zinc finger-containing protein 1 isoform 2 {ECO:0000313|EMBL:JAB08914.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038778}  [Source:UniProtKB/TrEMBL;Acc:F7IDS1]
ENSCJAG00000019531	NOVEL	protein_coding	ENSCJAG00000019531	chromosome:C_jacchus3.2.1:4:1:171630274:1	28758713	28759232	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036271}  [Source:UniProtKB/TrEMBL;Acc:F7E626]
ENSCJAG00000016089	KNOWN	protein_coding	CENPH	chromosome:C_jacchus3.2.1:2:1:204313951:1	137832863	137857375	R	Centromere protein H {ECO:0000313|EMBL:JAB07311.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029614}  [Source:UniProtKB/TrEMBL;Acc:F7HY66]
ENSCJAG00000016092	KNOWN	protein_coding	MRPS36	chromosome:C_jacchus3.2.1:2:1:204313951:1	137810305	137826334	R	28S ribosomal protein S36, mitochondrial {ECO:0000313|EMBL:JAB10425.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029616}  [Source:UniProtKB/TrEMBL;Acc:F7HY63]
ENSCJAG00000020844	KNOWN	protein_coding	TRIB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	6300054	6317784	D	Tribbles homolog 3 {ECO:0000313|EMBL:JAB07940.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047323}  [Source:UniProtKB/TrEMBL;Acc:F7I1N9]
ENSCJAG00000006204	KNOWN	protein_coding	SYBU	chromosome:C_jacchus3.2.1:16:1:96796970:1	84906797	85022902	D	Syntabulin isoform a {ECO:0000313|EMBL:JAB18263.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011484}  [Source:UniProtKB/TrEMBL;Acc:F7IMS6]
ENSCJAG00000017685	KNOWN_BY_PROJECTION	protein_coding	BIN2	chromosome:C_jacchus3.2.1:9:1:124281992:1	40124248	40169745	R	bridging integrator 2 [Source:HGNC Symbol;Acc:HGNC:1053]
ENSCJAG00000020843	KNOWN	protein_coding	NRSN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	6264215	6272986	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038770}  [Source:UniProtKB/TrEMBL;Acc:F7IDS7]
ENSCJAG00000020839	KNOWN_BY_PROJECTION	protein_coding	ZCCHC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	6214404	6215615	D	zinc finger, CCHC domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16230]
ENSCJAG00000016093	KNOWN	protein_coding	CDK7	chromosome:C_jacchus3.2.1:2:1:204313951:1	137765509	137806761	R	Cyclin-dependent kinase 7 {ECO:0000313|EMBL:JAB10961.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029666}  [Source:UniProtKB/TrEMBL;Acc:F7IRE4]
ENSCJAG00000006196	NOVEL	protein_coding	ENSCJAG00000006196	chromosome:C_jacchus3.2.1:16:1:96796970:1	84780645	84781459	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011378}  [Source:UniProtKB/TrEMBL;Acc:F7I437]
ENSCJAG00000032904	NOVEL	protein_coding	ENSCJAG00000032904	chromosome:C_jacchus3.2.1:2:1:204313951:1	137718600	137719058	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042453}  [Source:UniProtKB/TrEMBL;Acc:F6ZQ98]
ENSCJAG00000016122	KNOWN	protein_coding	CCDC125	chromosome:C_jacchus3.2.1:2:1:204313951:1	137710131	137759632	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029703}  [Source:UniProtKB/TrEMBL;Acc:F7IC57]
ENSCJAG00000006183	KNOWN	protein_coding	KCNV1	chromosome:C_jacchus3.2.1:16:1:96796970:1	84582808	84590572	D	Potassium voltage-gated channel subfamily V member 1 {ECO:0000313|EMBL:JAB29576.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042235}  [Source:UniProtKB/TrEMBL;Acc:F7ARX6]
ENSCJAG00000034158	NOVEL	protein_coding	ENSCJAG00000034158	chromosome:C_jacchus3.2.1:16:1:96796970:1	83260923	83262311	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6UI94]
ENSCJAG00000035163	NOVEL	protein_coding	ENSCJAG00000035163	chromosome:C_jacchus3.2.1:16:1:96796970:1	83245887	83247091	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7DY36]
ENSCJAG00000036421	KNOWN_BY_PROJECTION	protein_coding	TAF9	chromosome:C_jacchus3.2.1:2:1:204313951:1	137567207	137585761	D	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa [Source:HGNC Symbol;Acc:HGNC:11542]
ENSCJAG00000017680	KNOWN	protein_coding	SMAGP	chromosome:C_jacchus3.2.1:9:1:124281992:1	40084515	40116952	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032588}  [Source:UniProtKB/TrEMBL;Acc:F7FIK0]
ENSCJAG00000012830	KNOWN_BY_PROJECTION	protein_coding	SLC6A2	chromosome:C_jacchus3.2.1:20:1:44557958:1	9628440	9677811	D	solute carrier family 6 (neurotransmitter transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11048]
ENSCJAG00000016143	KNOWN	protein_coding	ENSCJAG00000016143	chromosome:C_jacchus3.2.1:2:1:204313951:1	137566779	137571844	D	Adenylate kinase isoenzyme 6 isoform a {ECO:0000313|EMBL:JAB06753.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036279}  [Source:UniProtKB/TrEMBL;Acc:F7E5U6]
ENSCJAG00000016163	KNOWN_BY_PROJECTION	protein_coding	RAD17	chromosome:C_jacchus3.2.1:2:1:204313951:1	137522781	137565585	R	RAD17 homolog (S. pombe) [Source:HGNC Symbol;Acc:HGNC:9807]
ENSCJAG00000012928	KNOWN_BY_PROJECTION	protein_coding	CAPNS2	chromosome:C_jacchus3.2.1:20:1:44557958:1	9546185	9546940	D	calpain, small subunit 2 [Source:HGNC Symbol;Acc:HGNC:16371]
ENSCJAG00000020601	KNOWN_BY_PROJECTION	protein_coding	GGA2	chromosome:C_jacchus3.2.1:12:1:121768101:1	22360533	22401197	R	golgi-associated, gamma adaptin ear containing, ARF binding protein 2 [Source:HGNC Symbol;Acc:HGNC:16064]
ENSCJAG00000016202	KNOWN_BY_PROJECTION	protein_coding	MARVELD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	137497329	137517297	R	MARVEL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26401]
ENSCJAG00000012902	KNOWN_BY_PROJECTION	protein_coding	LPCAT2	chromosome:C_jacchus3.2.1:20:1:44557958:1	9482050	9568149	D	lysophosphatidylcholine acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:26032]
ENSCJAG00000016225	KNOWN	protein_coding	OCLN	chromosome:C_jacchus3.2.1:2:1:204313951:1	137387521	137452459	R	Occludin isoform a {ECO:0000313|EMBL:JAB11480.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029892}  [Source:UniProtKB/TrEMBL;Acc:F7INV8]
ENSCJAG00000020599	KNOWN_BY_PROJECTION	protein_coding	COG7	chromosome:C_jacchus3.2.1:12:1:121768101:1	22283680	22348456	R	component of oligomeric golgi complex 7 [Source:HGNC Symbol;Acc:HGNC:18622]
ENSCJAG00000017661	KNOWN	protein_coding	DAZAP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	40077628	40085895	D	DAZ-associated protein 2 isoform a {ECO:0000313|EMBL:JAB33804.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032575}  [Source:UniProtKB/TrEMBL;Acc:F7FWV5]
ENSCJAG00000020829	KNOWN_BY_PROJECTION	protein_coding	C20orf96	chromosome:C_jacchus3.2.1:5:1:159171411:1	6179550	6200729	R	chromosome 20 open reading frame 96 [Source:HGNC Symbol;Acc:HGNC:16227]
ENSCJAG00000020597	KNOWN_BY_PROJECTION	protein_coding	SCNN1B	chromosome:C_jacchus3.2.1:12:1:121768101:1	22199759	22283998	D	sodium channel, non voltage gated 1 beta subunit [Source:HGNC Symbol;Acc:HGNC:10600]
ENSCJAG00000005957	KNOWN_BY_PROJECTION	protein_coding	CSMD3	chromosome:C_jacchus3.2.1:16:1:96796970:1	81153146	82447656	D	CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
ENSCJAG00000020826	KNOWN_BY_PROJECTION	protein_coding	DEFB132	chromosome:C_jacchus3.2.1:5:1:159171411:1	6154008	6157382	D	defensin, beta 132 [Source:HGNC Symbol;Acc:HGNC:33806]
ENSCJAG00000020824	KNOWN_BY_PROJECTION	protein_coding	DEFB129	chromosome:C_jacchus3.2.1:5:1:159171411:1	6142852	6145437	D	defensin, beta 129 [Source:HGNC Symbol;Acc:HGNC:16218]
ENSCJAG00000020823	KNOWN_BY_PROJECTION	protein_coding	DEFB128	chromosome:C_jacchus3.2.1:5:1:159171411:1	6112102	6113897	R	defensin, beta 128 [Source:HGNC Symbol;Acc:HGNC:18106]
ENSCJAG00000020819	KNOWN_BY_PROJECTION	protein_coding	DEFB126	chromosome:C_jacchus3.2.1:5:1:159171411:1	6091173	6094755	D	defensin, beta 126 [Source:HGNC Symbol;Acc:HGNC:15900]
ENSCJAG00000020818	KNOWN_BY_PROJECTION	protein_coding	DEFB125	chromosome:C_jacchus3.2.1:5:1:159171411:1	6061725	6070594	D	defensin, beta 125 [Source:HGNC Symbol;Acc:HGNC:18105]
ENSCJAG00000016246	KNOWN	protein_coding	GTF2H2	chromosome:C_jacchus3.2.1:2:1:204313951:1	137350488	137575001	R	General transcription factor IIH subunit 2 {ECO:0000313|EMBL:JAB01681.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037200}  [Source:UniProtKB/TrEMBL;Acc:F6YHG0]
ENSCJAG00000012929	KNOWN	protein_coding	MMP2	chromosome:C_jacchus3.2.1:20:1:44557958:1	9452147	9479945	D	72 kDa type IV collagenase isoform a preproprotein {ECO:0000313|EMBL:JAB11057.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023748}  [Source:UniProtKB/TrEMBL;Acc:F7FMH3]
ENSCJAG00000001846	KNOWN	protein_coding	PLRG1	chromosome:C_jacchus3.2.1:3:1:190850796:1	37934071	37947832	D	Pleiotropic regulator 1 isoform 1 {ECO:0000313|EMBL:JAB04012.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003421}  [Source:UniProtKB/TrEMBL;Acc:F7H4T9]
ENSCJAG00000020814	KNOWN_BY_PROJECTION	protein_coding	DEFB118	chromosome:C_jacchus3.2.1:5:1:159171411:1	5971785	5974601	R	defensin, beta 118 [Source:HGNC Symbol;Acc:HGNC:16196]
ENSCJAG00000020812	KNOWN_BY_PROJECTION	protein_coding	DEFB119	chromosome:C_jacchus3.2.1:5:1:159171411:1	5956361	5968737	D	defensin, beta 119 [Source:HGNC Symbol;Acc:HGNC:18099]
ENSCJAG00000033925	NOVEL	protein_coding	ENSCJAG00000033925	chromosome:C_jacchus3.2.1:16:1:96796970:1	80725428	80726721	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046820}  [Source:UniProtKB/TrEMBL;Acc:F7IS23]
ENSCJAG00000020811	KNOWN_BY_PROJECTION	protein_coding	DEFB121	chromosome:C_jacchus3.2.1:5:1:159171411:1	5904828	5908202	D	defensin, beta 121 [Source:HGNC Symbol;Acc:HGNC:18101]
ENSCJAG00000020810	KNOWN_BY_PROJECTION	protein_coding	DEFB123	chromosome:C_jacchus3.2.1:5:1:159171411:1	5859975	5870268	R	defensin, beta 123 [Source:HGNC Symbol;Acc:HGNC:18103]
ENSCJAG00000005928	KNOWN_BY_PROJECTION	protein_coding	TRPS1	chromosome:C_jacchus3.2.1:16:1:96796970:1	79146685	79403954	D	trichorhinophalangeal syndrome I [Source:HGNC Symbol;Acc:HGNC:12340]
ENSCJAG00000012962	KNOWN_BY_PROJECTION	protein_coding	IRX6	chromosome:C_jacchus3.2.1:20:1:44557958:1	9285975	9293853	D	iroquois homeobox 6 [Source:HGNC Symbol;Acc:HGNC:14675]
ENSCJAG00000020809	KNOWN_BY_PROJECTION	protein_coding	DEFB124	chromosome:C_jacchus3.2.1:5:1:159171411:1	5847878	5850826	D	defensin, beta 124 [Source:HGNC Symbol;Acc:HGNC:18104]
ENSCJAG00000005903	KNOWN	protein_coding	UTP23	chromosome:C_jacchus3.2.1:16:1:96796970:1	78055207	78061083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010850}; rRNA-processing protein UTP23 homolog {ECO:0000313|EMBL:JAB11065.1}  [Source:UniProtKB/TrEMBL;Acc:F7HWG8]
ENSCJAG00000005910	KNOWN	protein_coding	EIF3H	chromosome:C_jacchus3.2.1:16:1:96796970:1	78076585	78185321	D	Eukaryotic translation initiation factor 3 subunit H {ECO:0000256|HAMAP-Rule:MF_03007}  [Source:UniProtKB/TrEMBL;Acc:F7IS24]
ENSCJAG00000016290	NOVEL	protein_coding	ENSCJAG00000016290	chromosome:C_jacchus3.2.1:2:1:204313951:1	137210062	137268568	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029999}  [Source:UniProtKB/TrEMBL;Acc:F7I0B0]
ENSCJAG00000012968	KNOWN_BY_PROJECTION	protein_coding	IRX5	chromosome:C_jacchus3.2.1:20:1:44557958:1	8870800	8874102	D	iroquois homeobox 5 [Source:HGNC Symbol;Acc:HGNC:14361]
ENSCJAG00000032885	NOVEL	protein_coding	ENSCJAG00000032885	chromosome:C_jacchus3.2.1:16:1:96796970:1	78023845	78024434	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049084}  [Source:UniProtKB/TrEMBL;Acc:F6W4L0]
ENSCJAG00000020591	KNOWN_BY_PROJECTION	protein_coding	SCNN1G	chromosome:C_jacchus3.2.1:12:1:121768101:1	22083003	22110463	D	sodium channel, non voltage gated 1 gamma subunit [Source:HGNC Symbol;Acc:HGNC:10602]
ENSCJAG00000016309	KNOWN	protein_coding	ENSCJAG00000016309	chromosome:C_jacchus3.2.1:2:1:204313951:1	137179782	137186337	D	Small EDRK-rich factor 1 isoform 2 {ECO:0000313|EMBL:JAB05884.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030001}  [Source:UniProtKB/TrEMBL;Acc:F6SEZ1]
ENSCJAG00000031680	NOVEL	pseudogene	ENSCJAG00000031680	chromosome:C_jacchus3.2.1:20:1:44557958:1	8548081	8548492	D	<no descrition>
ENSCJAG00000017646	KNOWN	protein_coding	POU6F1	chromosome:C_jacchus3.2.1:9:1:124281992:1	40028825	40056906	R	POU domain, class 6, transcription factor 1 {ECO:0000313|EMBL:JAB05856.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032529}  [Source:UniProtKB/TrEMBL;Acc:F7GR72]
ENSCJAG00000001418	KNOWN_BY_PROJECTION	protein_coding	IRX3	chromosome:C_jacchus3.2.1:20:1:44557958:1	8216335	8219471	R	iroquois homeobox 3 [Source:HGNC Symbol;Acc:HGNC:14360]
ENSCJAG00000005844	KNOWN	protein_coding	RAD21	chromosome:C_jacchus3.2.1:16:1:96796970:1	77951267	77982457	D	Double-strand-break repair protein rad21 homolog {ECO:0000313|EMBL:JAB11415.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010832}  [Source:UniProtKB/TrEMBL;Acc:F7HYV6]
ENSCJAG00000020805	KNOWN_BY_PROJECTION	protein_coding	REM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	5833138	5843985	R	RAS (RAD and GEM)-like GTP-binding 1 [Source:HGNC Symbol;Acc:HGNC:15922]
ENSCJAG00000032451	NOVEL	protein_coding	ENSCJAG00000032451	chromosome:C_jacchus3.2.1:5:1:159171411:1	5768202	5771102	R	Malignant T-cell-amplified sequence {ECO:0000256|PIRNR:PIRNR005067}  [Source:UniProtKB/TrEMBL;Acc:F6VAN6]
ENSCJAG00000018242	NOVEL	protein_coding	ENSCJAG00000018242	chromosome:C_jacchus3.2.1:9:1:124281992:1	39984741	39985971	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033758}  [Source:UniProtKB/TrEMBL;Acc:F6T326]
ENSCJAG00000001425	KNOWN	protein_coding	FTO	chromosome:C_jacchus3.2.1:20:1:44557958:1	7621979	8045432	D	Alpha-ketoglutarate-dependent dioxygenase FTO {ECO:0000313|EMBL:JAB09522.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002553}  [Source:UniProtKB/TrEMBL;Acc:F7IL13]
ENSCJAG00000005839	KNOWN_BY_PROJECTION	protein_coding	AARD	chromosome:C_jacchus3.2.1:16:1:96796970:1	77880131	77884536	R	alanine and arginine rich domain containing protein [Source:HGNC Symbol;Acc:HGNC:33842]
ENSCJAG00000005833	KNOWN_BY_PROJECTION	protein_coding	SLC30A8	chromosome:C_jacchus3.2.1:16:1:96796970:1	77644119	77693260	R	solute carrier family 30 (zinc transporter), member 8 [Source:HGNC Symbol;Acc:HGNC:20303]
ENSCJAG00000020583	KNOWN_BY_PROJECTION	protein_coding	USP31	chromosome:C_jacchus3.2.1:12:1:121768101:1	21976005	22046085	R	ubiquitin specific peptidase 31 [Source:HGNC Symbol;Acc:HGNC:20060]
ENSCJAG00000034364	KNOWN_BY_PROJECTION	protein_coding	BDP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	137038342	137173799	R	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:HGNC Symbol;Acc:HGNC:13652]
ENSCJAG00000005824	KNOWN	protein_coding	MED30	chromosome:C_jacchus3.2.1:16:1:96796970:1	77271125	77289630	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010698}  [Source:UniProtKB/TrEMBL;Acc:F7IS65]
ENSCJAG00000020582	KNOWN_BY_PROJECTION	protein_coding	HS3ST2	chromosome:C_jacchus3.2.1:12:1:121768101:1	21711641	21817026	D	heparan sulfate (glucosamine) 3-O-sulfotransferase 2 [Source:HGNC Symbol;Acc:HGNC:5195]
ENSCJAG00000005811	KNOWN	protein_coding	SAMD12	chromosome:C_jacchus3.2.1:16:1:96796970:1	76316711	76722605	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010673}  [Source:UniProtKB/TrEMBL;Acc:F7HN73]
ENSCJAG00000005815	KNOWN_BY_PROJECTION	protein_coding	EXT1	chromosome:C_jacchus3.2.1:16:1:96796970:1	76976558	77014419	D	exostosin glycosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:3512]
ENSCJAG00000005804	KNOWN	protein_coding	TNFRSF11B	chromosome:C_jacchus3.2.1:16:1:96796970:1	75964658	75993107	D	Tumor necrosis factor receptor superfamily member 11B {ECO:0000256|PIRNR:PIRNR038065}  [Source:UniProtKB/TrEMBL;Acc:F7HTR5]
ENSCJAG00000001445	KNOWN_BY_PROJECTION	protein_coding	RPGRIP1L	chromosome:C_jacchus3.2.1:20:1:44557958:1	7524377	7621657	R	RPGRIP1-like [Source:HGNC Symbol;Acc:HGNC:29168]
ENSCJAG00000017599	KNOWN	protein_coding	TFCP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	39955285	40017266	R	Alpha-globin transcription factor CP2 isoform 1 {ECO:0000313|EMBL:JAB17148.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032500}  [Source:UniProtKB/TrEMBL;Acc:F7H1F4]
ENSCJAG00000005790	KNOWN_BY_PROJECTION	protein_coding	COLEC10	chromosome:C_jacchus3.2.1:16:1:96796970:1	75805216	75848330	R	collectin sub-family member 10 (C-type lectin) [Source:HGNC Symbol;Acc:HGNC:2220]
ENSCJAG00000005782	KNOWN_BY_PROJECTION	protein_coding	MAL2	chromosome:C_jacchus3.2.1:16:1:96796970:1	75688721	75716579	R	mal, T-cell differentiation protein 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:13634]
ENSCJAG00000005759	KNOWN_BY_PROJECTION	protein_coding	NOV	chromosome:C_jacchus3.2.1:16:1:96796970:1	75500069	75507950	R	nephroblastoma overexpressed [Source:HGNC Symbol;Acc:HGNC:7885]
ENSCJAG00000017590	KNOWN	protein_coding	CSRNP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	39922105	39941932	R	Cysteine/serine-rich nuclear protein 2 {ECO:0000313|EMBL:JAB04077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032415}  [Source:UniProtKB/TrEMBL;Acc:F7EDZ6]
ENSCJAG00000001498	KNOWN	protein_coding	AKTIP	chromosome:C_jacchus3.2.1:20:1:44557958:1	7399753	7410782	R	AKT-interacting protein {ECO:0000313|EMBL:JAB18015.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002703}  [Source:UniProtKB/TrEMBL;Acc:F7ISY4]
ENSCJAG00000005628	KNOWN_BY_PROJECTION	protein_coding	ENPP2	chromosome:C_jacchus3.2.1:16:1:96796970:1	75279374	75362180	D	ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:3357]
ENSCJAG00000020569	KNOWN_BY_PROJECTION	protein_coding	OTOA	chromosome:C_jacchus3.2.1:12:1:121768101:1	21372174	21455540	D	otoancorin [Source:HGNC Symbol;Acc:HGNC:16378]
ENSCJAG00000020788	KNOWN	protein_coding	HM13	chromosome:C_jacchus3.2.1:5:1:159171411:1	5746900	5801964	R	Minor histocompatibility antigen H13 isoform 1 {ECO:0000313|EMBL:JAB09130.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038702}  [Source:UniProtKB/TrEMBL;Acc:F7IKY1]
ENSCJAG00000020568	KNOWN_BY_PROJECTION	protein_coding	IGSF6	chromosome:C_jacchus3.2.1:12:1:121768101:1	21338124	21349661	R	immunoglobulin superfamily, member 6 [Source:HGNC Symbol;Acc:HGNC:5953]
ENSCJAG00000020787	KNOWN_BY_PROJECTION	protein_coding	ID1	chromosome:C_jacchus3.2.1:5:1:159171411:1	5706159	5707285	R	inhibitor of DNA binding 1, dominant negative helix-loop-helix protein [Source:HGNC Symbol;Acc:HGNC:5360]
ENSCJAG00000020784	NOVEL	protein_coding	ENSCJAG00000020784	chromosome:C_jacchus3.2.1:5:1:159171411:1	5662094	5663963	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038666}  [Source:UniProtKB/TrEMBL;Acc:F7IT32]
ENSCJAG00000020785	KNOWN	protein_coding	COX4I2	chromosome:C_jacchus3.2.1:5:1:159171411:1	5664833	5677560	R	Cytochrome c oxidase subunit 4 isoform 2, mitochondrial {ECO:0000313|EMBL:JAB08996.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038668}  [Source:UniProtKB/TrEMBL;Acc:F7IT30]
ENSCJAG00000005547	KNOWN	protein_coding	TAF2	chromosome:C_jacchus3.2.1:16:1:96796970:1	75091741	75179305	D	Transcription initiation factor TFIID subunit 2 {ECO:0000313|EMBL:JAB04934.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010278}  [Source:UniProtKB/TrEMBL;Acc:F7C9J2]
ENSCJAG00000020780	KNOWN	protein_coding	BCL2L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	5586766	5645558	D	Bcl-2-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB05207.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038663}  [Source:UniProtKB/TrEMBL;Acc:F7IT34]
ENSCJAG00000017564	KNOWN_BY_PROJECTION	protein_coding	LETMD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	39884217	39919794	D	LETM1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24241]
ENSCJAG00000005518	KNOWN_BY_PROJECTION	protein_coding	DSCC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	75065556	75090628	D	DNA replication and sister chromatid cohesion 1 [Source:HGNC Symbol;Acc:HGNC:24453]
ENSCJAG00000033570	NOVEL	protein_coding	ENSCJAG00000033570	chromosome:C_jacchus3.2.1:9:1:124281992:1	39873997	39874927	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052210}  [Source:UniProtKB/TrEMBL;Acc:F7ILI9]
ENSCJAG00000004011	KNOWN_BY_PROJECTION	protein_coding	VPS13C	chromosome:C_jacchus3.2.1:10:1:132174527:1	4257405	4452529	R	vacuolar protein sorting 13 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:23594]
ENSCJAG00000001518	KNOWN_BY_PROJECTION	protein_coding	RBL2	chromosome:C_jacchus3.2.1:20:1:44557958:1	7345150	7399126	D	retinoblastoma-like 2 [Source:HGNC Symbol;Acc:HGNC:9894]
ENSCJAG00000032798	NOVEL	protein_coding	ENSCJAG00000032798	chromosome:C_jacchus3.2.1:9:1:124281992:1	39871165	39873684	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044369}  [Source:UniProtKB/TrEMBL;Acc:F7FJ28]
ENSCJAG00000020564	KNOWN	protein_coding	ENSCJAG00000020564	chromosome:C_jacchus3.2.1:12:1:121768101:1	21308477	21354151	D	Methyltransferase-like protein 9 isoform 1 {ECO:0000313|EMBL:JAB04410.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038212}  [Source:UniProtKB/TrEMBL;Acc:F7HJZ4]
ENSCJAG00000005497	KNOWN	protein_coding	DEPTOR	chromosome:C_jacchus3.2.1:16:1:96796970:1	74862237	75042476	R	DEP domain-containing mTOR-interacting protein {ECO:0000313|EMBL:JAB03497.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010062}  [Source:UniProtKB/TrEMBL;Acc:F7BCX8]
ENSCJAG00000008902	KNOWN_BY_PROJECTION	protein_coding	CDR2	chromosome:C_jacchus3.2.1:12:1:121768101:1	21177032	21208083	R	cerebellar degeneration-related protein 2, 62kDa [Source:HGNC Symbol;Acc:HGNC:1799]
ENSCJAG00000001725	NOVEL	protein_coding	ENSCJAG00000001725	chromosome:C_jacchus3.2.1:20:1:44557958:1	7176853	7199925	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003075}  [Source:UniProtKB/TrEMBL;Acc:F7FUS7]
ENSCJAG00000020774	KNOWN_BY_PROJECTION	protein_coding	TPX2	chromosome:C_jacchus3.2.1:5:1:159171411:1	5504257	5555557	R	TPX2, microtubule-associated [Source:HGNC Symbol;Acc:HGNC:1249]
ENSCJAG00000020773	KNOWN_BY_PROJECTION	protein_coding	MYLK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	5468940	5486333	R	myosin light chain kinase 2 [Source:HGNC Symbol;Acc:HGNC:16243]
ENSCJAG00000020772	KNOWN	protein_coding	DUSP15	chromosome:C_jacchus3.2.1:5:1:159171411:1	5435112	5454861	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044255}  [Source:UniProtKB/TrEMBL;Acc:F7DK77]
ENSCJAG00000005370	KNOWN	protein_coding	COL14A1	chromosome:C_jacchus3.2.1:16:1:96796970:1	74511913	74792994	R	Collagen alpha-1(XIV) chain {ECO:0000313|EMBL:JAB05564.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010021}  [Source:UniProtKB/TrEMBL;Acc:F7CQB7]
ENSCJAG00000020768	KNOWN_BY_PROJECTION	protein_coding	TTLL9	chromosome:C_jacchus3.2.1:5:1:159171411:1	5359282	5435451	R	tubulin tyrosine ligase-like family member 9 [Source:HGNC Symbol;Acc:HGNC:16118]
ENSCJAG00000001822	KNOWN_BY_PROJECTION	protein_coding	FGB	chromosome:C_jacchus3.2.1:3:1:190850796:1	37910493	37919097	R	fibrinogen beta chain [Source:HGNC Symbol;Acc:HGNC:3662]
ENSCJAG00000005359	KNOWN	protein_coding	MRPL13	chromosome:C_jacchus3.2.1:16:1:96796970:1	74406642	74479524	D	39S ribosomal protein L13, mitochondrial {ECO:0000313|EMBL:JAB10875.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045779}  [Source:UniProtKB/TrEMBL;Acc:F6S6K9]
ENSCJAG00000020766	KNOWN	protein_coding	PDRG1	chromosome:C_jacchus3.2.1:5:1:159171411:1	5351546	5358584	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038631}; p53 and DNA damage-regulated protein 1 {ECO:0000313|EMBL:JAB02948.1}  [Source:UniProtKB/TrEMBL;Acc:F7HV14]
ENSCJAG00000005324	KNOWN_BY_PROJECTION	protein_coding	MTBP	chromosome:C_jacchus3.2.1:16:1:96796970:1	74326892	74406623	R	MDM2 binding protein [Source:HGNC Symbol;Acc:HGNC:7417]
ENSCJAG00000020763	KNOWN_BY_PROJECTION	protein_coding	XKR7	chromosome:C_jacchus3.2.1:5:1:159171411:1	5307563	5336254	R	XK, Kell blood group complex subunit-related family, member 7 [Source:HGNC Symbol;Acc:HGNC:23062]
ENSCJAG00000005315	KNOWN_BY_PROJECTION	protein_coding	SNTB1	chromosome:C_jacchus3.2.1:16:1:96796970:1	74028037	74316132	D	syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) [Source:HGNC Symbol;Acc:HGNC:11168]
ENSCJAG00000005300	KNOWN_BY_PROJECTION	protein_coding	HAS2	chromosome:C_jacchus3.2.1:16:1:96796970:1	73165522	73192766	D	hyaluronan synthase 2 [Source:HGNC Symbol;Acc:HGNC:4819]
ENSCJAG00000020759	KNOWN_BY_PROJECTION	protein_coding	CCM2L	chromosome:C_jacchus3.2.1:5:1:159171411:1	5271123	5288934	R	cerebral cavernous malformation 2-like [Source:HGNC Symbol;Acc:HGNC:16153]
ENSCJAG00000005298	NOVEL	protein_coding	ENSCJAG00000005298	chromosome:C_jacchus3.2.1:16:1:96796970:1	73037574	73039348	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009684}  [Source:UniProtKB/TrEMBL;Acc:F7ETX0]
ENSCJAG00000001810	NOVEL	protein_coding	ENSCJAG00000001810	chromosome:C_jacchus3.2.1:3:1:190850796:1	37886608	37892133	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003249}  [Source:UniProtKB/TrEMBL;Acc:F7GPV7]
ENSCJAG00000013768	NOVEL	pseudogene	ENSCJAG00000013768	chromosome:C_jacchus3.2.1:16:1:96796970:1	72026006	72026879	R	<no descrition>
ENSCJAG00000036377	NOVEL	pseudogene	ENSCJAG00000036377	chromosome:C_jacchus3.2.1:16:1:96796970:1	71781991	71782585	D	<no descrition>
ENSCJAG00000022247	KNOWN	protein_coding	ZHX2	chromosome:C_jacchus3.2.1:16:1:96796970:1	71820447	72012580	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040899}; Zinc fingers and homeoboxes protein 2 {ECO:0000313|EMBL:JAB03137.1}  [Source:UniProtKB/TrEMBL;Acc:F7I6W4]
ENSCJAG00000004007	NOVEL	protein_coding	ENSCJAG00000004007	chromosome:C_jacchus3.2.1:10:1:132174527:1	4106899	4108188	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045881}  [Source:UniProtKB/TrEMBL;Acc:F6Q047]
ENSCJAG00000000994	KNOWN	protein_coding	DERL1	chromosome:C_jacchus3.2.1:16:1:96796970:1	71752205	71783584	D	Derlin-1 isoform a {ECO:0000313|EMBL:JAB03769.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045309}  [Source:UniProtKB/TrEMBL;Acc:F6U3W9]
ENSCJAG00000016310	KNOWN_BY_PROJECTION	protein_coding	MCCC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	136940166	137023346	R	methylcrotonoyl-CoA carboxylase 2 (beta) [Source:HGNC Symbol;Acc:HGNC:6937]
ENSCJAG00000021689	NOVEL	protein_coding	ENSCJAG00000021689	chromosome:C_jacchus3.2.1:9:1:124281992:1	39795087	39856423	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023426}  [Source:UniProtKB/TrEMBL;Acc:F7ISK1]
ENSCJAG00000000953	KNOWN_BY_PROJECTION	protein_coding	TBC1D31	chromosome:C_jacchus3.2.1:16:1:96796970:1	71655781	71730286	R	TBC1 domain family, member 31 [Source:HGNC Symbol;Acc:HGNC:30888]
ENSCJAG00000016330	KNOWN	protein_coding	CARTPT	chromosome:C_jacchus3.2.1:2:1:204313951:1	136884096	136886004	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030060}  [Source:UniProtKB/TrEMBL;Acc:F6RT58]
ENSCJAG00000016333	KNOWN_BY_PROJECTION	protein_coding	MAP1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	136352844	136457265	R	microtubule-associated protein 1B [Source:HGNC Symbol;Acc:HGNC:6836]
ENSCJAG00000021688	NOVEL	protein_coding	ENSCJAG00000021688	chromosome:C_jacchus3.2.1:9:1:124281992:1	39779783	39780580	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040385}  [Source:UniProtKB/TrEMBL;Acc:F7IR16]
ENSCJAG00000021687	KNOWN_BY_PROJECTION	protein_coding	HIGD1C	chromosome:C_jacchus3.2.1:9:1:124281992:1	39775656	39786885	D	HIG1 hypoxia inducible domain family, member 1C [Source:HGNC Symbol;Acc:HGNC:28044]
ENSCJAG00000016356	KNOWN	protein_coding	MRPS27	chromosome:C_jacchus3.2.1:2:1:204313951:1	136237927	136341213	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030101}  [Source:UniProtKB/TrEMBL;Acc:F6WCW8]
ENSCJAG00000021686	KNOWN_BY_PROJECTION	protein_coding	METTL7A	chromosome:C_jacchus3.2.1:9:1:124281992:1	39751812	39757296	D	methyltransferase like 7A [Source:HGNC Symbol;Acc:HGNC:24550]
ENSCJAG00000000952	NOVEL	pseudogene	ENSCJAG00000000952	chromosome:C_jacchus3.2.1:16:1:96796970:1	71597133	71598683	D	<no descrition>
ENSCJAG00000035957	KNOWN	protein_coding	C16H8ORF76	chromosome:C_jacchus3.2.1:16:1:96796970:1	71526197	71578408	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001606}; Uncharacterized protein C8orf76 {ECO:0000313|EMBL:JAB07261.1}  [Source:UniProtKB/TrEMBL;Acc:F6USS3]
ENSCJAG00000008918	KNOWN_BY_PROJECTION	protein_coding	POLR3E	chromosome:C_jacchus3.2.1:12:1:121768101:1	21125819	21160939	D	polymerase (RNA) III (DNA directed) polypeptide E (80kD) [Source:HGNC Symbol;Acc:HGNC:30347]
ENSCJAG00000033313	NOVEL	protein_coding	ENSCJAG00000033313	chromosome:C_jacchus3.2.1:16:1:96796970:1	71448577	71449426	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049446}  [Source:UniProtKB/TrEMBL;Acc:F7BHU3]
ENSCJAG00000000934	KNOWN_BY_PROJECTION	protein_coding	ZHX1	chromosome:C_jacchus3.2.1:16:1:96796970:1	71517331	71546713	D	zinc fingers and homeoboxes 1 [Source:HGNC Symbol;Acc:HGNC:12871]
ENSCJAG00000019533	KNOWN	protein_coding	EXOC2	chromosome:C_jacchus3.2.1:4:1:171630274:1	28575384	28754695	D	Exocyst complex component 2 {ECO:0000313|EMBL:JAB06641.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042873}  [Source:UniProtKB/TrEMBL;Acc:F6Z4S6]
ENSCJAG00000021157	KNOWN_BY_PROJECTION	protein_coding	TMPRSS12	chromosome:C_jacchus3.2.1:9:1:124281992:1	39707265	39738793	D	transmembrane (C-terminal) protease, serine 12 [Source:HGNC Symbol;Acc:HGNC:28779]
ENSCJAG00000021155	KNOWN	protein_coding	ATF1	chromosome:C_jacchus3.2.1:9:1:124281992:1	39617136	39678996	D	Cyclic AMP-dependent transcription factor ATF-1 {ECO:0000313|EMBL:JAB03759.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039381}  [Source:UniProtKB/TrEMBL;Acc:F7H513]
ENSCJAG00000001731	KNOWN_BY_PROJECTION	protein_coding	TOX3	chromosome:C_jacchus3.2.1:20:1:44557958:1	6306291	6506718	R	TOX high mobility group box family member 3 [Source:HGNC Symbol;Acc:HGNC:11972]
ENSCJAG00000000868	KNOWN_BY_PROJECTION	protein_coding	ATAD2	chromosome:C_jacchus3.2.1:16:1:96796970:1	71427977	71494108	D	ATPase family, AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]
ENSCJAG00000001740	KNOWN	protein_coding	SALL1	chromosome:C_jacchus3.2.1:20:1:44557958:1	4986446	5001919	R	Sal-like protein 1 isoform a {ECO:0000313|EMBL:JAB15349.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003126}  [Source:UniProtKB/TrEMBL;Acc:F7DWF8]
ENSCJAG00000009056	KNOWN_BY_PROJECTION	protein_coding	SDR42E2	chromosome:C_jacchus3.2.1:12:1:121768101:1	20985817	21012983	D	short chain dehydrogenase/reductase family 42E, member 2 [Source:HGNC Symbol;Acc:HGNC:35414]
ENSCJAG00000022654	NOVEL	protein_coding	ENSCJAG00000022654	chromosome:C_jacchus3.2.1:12:1:121768101:1	20972312	20973956	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045155}  [Source:UniProtKB/TrEMBL;Acc:F6S019]
ENSCJAG00000016364	KNOWN	protein_coding	PTCD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	136192054	136237810	R	Pentatricopeptide repeat-containing protein 2, mitochondrial {ECO:0000313|EMBL:JAB47054.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030124}  [Source:UniProtKB/TrEMBL;Acc:F6WCE1]
ENSCJAG00000019592	KNOWN_BY_PROJECTION	protein_coding	FOXF2	chromosome:C_jacchus3.2.1:4:1:171630274:1	27746553	27751113	R	forkhead box F2 [Source:HGNC Symbol;Acc:HGNC:3810]
ENSCJAG00000000865	KNOWN	protein_coding	WDYHV1	chromosome:C_jacchus3.2.1:16:1:96796970:1	71383494	71408791	R	Protein N-terminal glutamine amidohydrolase {ECO:0000313|EMBL:JAB01692.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001473}  [Source:UniProtKB/TrEMBL;Acc:F6W185]
ENSCJAG00000000837	KNOWN_BY_PROJECTION	protein_coding	KLHL38	chromosome:C_jacchus3.2.1:16:1:96796970:1	71167393	71175162	D	kelch-like family member 38 [Source:HGNC Symbol;Acc:HGNC:34435]
ENSCJAG00000001749	KNOWN	protein_coding	CYLD	chromosome:C_jacchus3.2.1:20:1:44557958:1	4569286	4625454	D	Ubiquitin carboxyl-terminal hydrolase CYLD isoform 2 {ECO:0000313|EMBL:JAB03180.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003189}  [Source:UniProtKB/TrEMBL;Acc:F7HFU3]
ENSCJAG00000000819	KNOWN_BY_PROJECTION	protein_coding	ANXA13	chromosome:C_jacchus3.2.1:16:1:96796970:1	71081564	71139129	D	annexin A13 [Source:HGNC Symbol;Acc:HGNC:536]
ENSCJAG00000003989	KNOWN	protein_coding	RORA	chromosome:C_jacchus3.2.1:10:1:132174527:1	2807411	3006285	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007275}  [Source:UniProtKB/TrEMBL;Acc:F6TG16]
ENSCJAG00000000803	KNOWN_BY_PROJECTION	protein_coding	FAM91A1	chromosome:C_jacchus3.2.1:16:1:96796970:1	71004692	71053468	R	family with sequence similarity 91, member A1 [Source:HGNC Symbol;Acc:HGNC:26306]
ENSCJAG00000001786	KNOWN_BY_PROJECTION	protein_coding	NOD2	chromosome:C_jacchus3.2.1:20:1:44557958:1	4516354	4535016	D	nucleotide-binding oligomerization domain containing 2 [Source:HGNC Symbol;Acc:HGNC:5331]
ENSCJAG00000016387	KNOWN_BY_PROJECTION	protein_coding	ZNF366	chromosome:C_jacchus3.2.1:2:1:204313951:1	136035775	136103144	D	zinc finger protein 366 [Source:HGNC Symbol;Acc:HGNC:18316]
ENSCJAG00000021818	NOVEL	protein_coding	ENSCJAG00000021818	chromosome:C_jacchus3.2.1:20:1:44557958:1	4429071	4431836	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040519}  [Source:UniProtKB/TrEMBL;Acc:F7HQI6]
ENSCJAG00000031191	NOVEL	pseudogene	ENSCJAG00000031191	chromosome:C_jacchus3.2.1:2:1:204313951:1	135780161	135780534	R	<no descrition>
ENSCJAG00000019610	KNOWN	protein_coding	GMDS	chromosome:C_jacchus3.2.1:4:1:171630274:1	26809125	27456508	D	GDP-mannose 4,6 dehydratase isoform 1 {ECO:0000313|EMBL:JAB04776.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036417}  [Source:UniProtKB/TrEMBL;Acc:F7EWI9]
ENSCJAG00000019623	NOVEL	pseudogene	ENSCJAG00000019623	chromosome:C_jacchus3.2.1:4:1:171630274:1	26708085	26708353	R	<no descrition>
ENSCJAG00000009062	KNOWN_BY_PROJECTION	protein_coding	VWA3A	chromosome:C_jacchus3.2.1:12:1:121768101:1	20913652	20976001	D	von Willebrand factor A domain containing 3A [Source:HGNC Symbol;Acc:HGNC:27088]
ENSCJAG00000000760	KNOWN_BY_PROJECTION	protein_coding	FER1L6	chromosome:C_jacchus3.2.1:16:1:96796970:1	70684726	70866394	R	fer-1-like family member 6 [Source:HGNC Symbol;Acc:HGNC:28065]
ENSCJAG00000032058	KNOWN_BY_PROJECTION	protein_coding	MYLK4	chromosome:C_jacchus3.2.1:4:1:171630274:1	26312285	26334654	D	myosin light chain kinase family, member 4 [Source:HGNC Symbol;Acc:HGNC:27972]
ENSCJAG00000009114	KNOWN_BY_PROJECTION	protein_coding	PDZD9	chromosome:C_jacchus3.2.1:12:1:121768101:1	20785036	20802243	R	PDZ domain containing 9 [Source:HGNC Symbol;Acc:HGNC:28740]
ENSCJAG00000001777	KNOWN_BY_PROJECTION	protein_coding	LRAT	chromosome:C_jacchus3.2.1:3:1:190850796:1	37712124	37722757	R	lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) [Source:HGNC Symbol;Acc:HGNC:6685]
ENSCJAG00000000756	KNOWN_BY_PROJECTION	protein_coding	TMEM65	chromosome:C_jacchus3.2.1:16:1:96796970:1	70403107	70481789	D	transmembrane protein 65 [Source:HGNC Symbol;Acc:HGNC:25203]
ENSCJAG00000020737	KNOWN	protein_coding	PLAGL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	5085621	5099355	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038570}; Zinc finger protein PLAGL2 {ECO:0000313|EMBL:JAB10915.1}  [Source:UniProtKB/TrEMBL;Acc:F7I6Y0]
ENSCJAG00000001768	KNOWN_BY_PROJECTION	protein_coding	RBM46	chromosome:C_jacchus3.2.1:3:1:190850796:1	37631367	37687085	R	RNA binding motif protein 46 [Source:HGNC Symbol;Acc:HGNC:28401]
ENSCJAG00000012826	KNOWN_BY_PROJECTION	protein_coding	TATDN1	chromosome:C_jacchus3.2.1:16:1:96796970:1	70259120	70315252	D	TatD DNase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24220]
ENSCJAG00000001801	KNOWN_BY_PROJECTION	protein_coding	NKD1	chromosome:C_jacchus3.2.1:20:1:44557958:1	4231657	4324975	D	naked cuticle homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17045]
ENSCJAG00000012818	KNOWN_BY_PROJECTION	protein_coding	NDUFB9	chromosome:C_jacchus3.2.1:16:1:96796970:1	70248333	70259032	R	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa [Source:HGNC Symbol;Acc:HGNC:7704]
ENSCJAG00000021142	KNOWN	protein_coding	DIP2B	chromosome:C_jacchus3.2.1:9:1:124281992:1	39327505	39597796	D	Disco-interacting protein 2 homolog B {ECO:0000313|EMBL:JAB10734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039379}  [Source:UniProtKB/TrEMBL;Acc:F7H527]
ENSCJAG00000003977	KNOWN	protein_coding	ICE2	chromosome:C_jacchus3.2.1:10:1:132174527:1	2735014	2790402	R	NMDA receptor-regulated protein 2 isoform a {ECO:0000313|EMBL:JAB06502.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007236}  [Source:UniProtKB/TrEMBL;Acc:F6PIY9]
ENSCJAG00000020721	KNOWN_BY_PROJECTION	protein_coding	POFUT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	5052456	5085017	R	protein O-fucosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:14988]
ENSCJAG00000020718	KNOWN	protein_coding	KIF3B	chromosome:C_jacchus3.2.1:5:1:159171411:1	4960646	5009300	R	Kinesin-like protein KIF3B {ECO:0000313|EMBL:JAB10793.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038535}  [Source:UniProtKB/TrEMBL;Acc:F7IBN6]
ENSCJAG00000034399	NOVEL	protein_coding	ENSCJAG00000034399	chromosome:C_jacchus3.2.1:3:1:190850796:1	37343714	37476518	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049853}  [Source:UniProtKB/TrEMBL;Acc:F6YV61]
ENSCJAG00000012784	KNOWN_BY_PROJECTION	protein_coding	MTSS1	chromosome:C_jacchus3.2.1:16:1:96796970:1	70055367	70247525	D	metastasis suppressor 1 [Source:HGNC Symbol;Acc:HGNC:20443]
ENSCJAG00000021810	KNOWN_BY_PROJECTION	protein_coding	NPY2R	chromosome:C_jacchus3.2.1:3:1:190850796:1	37210190	37220417	R	neuropeptide Y receptor Y2 [Source:HGNC Symbol;Acc:HGNC:7957]
ENSCJAG00000019628	KNOWN	protein_coding	WRNIP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	26204373	26226444	R	ATPase WRNIP1 isoform 1 {ECO:0000313|EMBL:JAB21555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036467}  [Source:UniProtKB/TrEMBL;Acc:F7D6S4]
ENSCJAG00000012779	KNOWN	protein_coding	ZNF572	chromosome:C_jacchus3.2.1:16:1:96796970:1	69788768	69793501	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023420}; Zinc finger protein 572 {ECO:0000313|EMBL:JAB02620.1}  [Source:UniProtKB/TrEMBL;Acc:F7ISK9]
ENSCJAG00000020708	KNOWN	protein_coding	ASXL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	4858764	4938810	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048880}  [Source:UniProtKB/TrEMBL;Acc:F6SM89]
ENSCJAG00000009116	KNOWN	protein_coding	UQCRC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	20756676	20784133	D	Cytochrome b-c1 complex subunit 2, mitochondrial {ECO:0000313|EMBL:JAB08283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016754}  [Source:UniProtKB/TrEMBL;Acc:F7ALK9]
ENSCJAG00000009144	KNOWN_BY_PROJECTION	protein_coding	CRYM	chromosome:C_jacchus3.2.1:12:1:121768101:1	20656826	20683259	R	crystallin, mu [Source:HGNC Symbol;Acc:HGNC:2418]
ENSCJAG00000012744	KNOWN_BY_PROJECTION	protein_coding	SQLE	chromosome:C_jacchus3.2.1:16:1:96796970:1	69751782	69863691	R	squalene epoxidase [Source:HGNC Symbol;Acc:HGNC:11279]
ENSCJAG00000009190	KNOWN_BY_PROJECTION	protein_coding	ANKS4B	chromosome:C_jacchus3.2.1:12:1:121768101:1	20630956	20647409	D	ankyrin repeat and sterile alpha motif domain containing 4B [Source:HGNC Symbol;Acc:HGNC:26795]
ENSCJAG00000020705	KNOWN	protein_coding	C20ORF112	chromosome:C_jacchus3.2.1:5:1:159171411:1	4840310	4849916	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038503}  [Source:UniProtKB/TrEMBL;Acc:F7IGF6]
ENSCJAG00000033742	NOVEL	protein_coding	ENSCJAG00000033742	chromosome:C_jacchus3.2.1:5:1:159171411:1	4760477	4780597	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048980}  [Source:UniProtKB/TrEMBL;Acc:F6PLV5]
ENSCJAG00000001761	KNOWN	protein_coding	MAP9	chromosome:C_jacchus3.2.1:3:1:190850796:1	37047421	37075038	D	Microtubule-associated protein 9 {ECO:0000313|EMBL:JAB16448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003158}  [Source:UniProtKB/TrEMBL;Acc:F7DFN0]
ENSCJAG00000012651	KNOWN_BY_PROJECTION	protein_coding	KIAA0196	chromosome:C_jacchus3.2.1:16:1:96796970:1	69682238	69749828	D	KIAA0196 [Source:HGNC Symbol;Acc:HGNC:28984]
ENSCJAG00000015717	KNOWN	protein_coding	COMMD7	chromosome:C_jacchus3.2.1:5:1:159171411:1	4538433	4571434	D	COMM domain-containing protein 7 isoform 1 {ECO:0000313|EMBL:JAB02764.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028928}  [Source:UniProtKB/TrEMBL;Acc:F7CGW8]
ENSCJAG00000012645	KNOWN	protein_coding	NSMCE2	chromosome:C_jacchus3.2.1:16:1:96796970:1	69405891	69682216	R	E3 SUMO-protein ligase NSE2 {ECO:0000313|EMBL:JAB47135.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023159}  [Source:UniProtKB/TrEMBL;Acc:F7HZF8]
ENSCJAG00000001898	KNOWN_BY_PROJECTION	protein_coding	ADCY7	chromosome:C_jacchus3.2.1:20:1:44557958:1	3975200	4006580	D	adenylate cyclase 7 [Source:HGNC Symbol;Acc:HGNC:238]
ENSCJAG00000012632	KNOWN	protein_coding	TRIB1	chromosome:C_jacchus3.2.1:16:1:96796970:1	69323674	69332145	R	Tribbles homolog 1 {ECO:0000313|EMBL:JAB02222.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023136}  [Source:UniProtKB/TrEMBL;Acc:F7I1U5]
ENSCJAG00000012629	KNOWN_BY_PROJECTION	protein_coding	FAM84B	chromosome:C_jacchus3.2.1:16:1:96796970:1	68205386	68207724	D	family with sequence similarity 84, member B [Source:HGNC Symbol;Acc:HGNC:24166]
ENSCJAG00000012619	NOVEL	pseudogene	ENSCJAG00000012619	chromosome:C_jacchus3.2.1:16:1:96796970:1	65345600	65345921	D	<no descrition>
ENSCJAG00000012609	KNOWN_BY_PROJECTION	protein_coding	GSDMC	chromosome:C_jacchus3.2.1:16:1:96796970:1	64930791	64968261	D	gasdermin C [Source:HGNC Symbol;Acc:HGNC:7151]
ENSCJAG00000001932	KNOWN_BY_PROJECTION	protein_coding	PAPD5	chromosome:C_jacchus3.2.1:20:1:44557958:1	3834924	3914826	D	PAP associated domain containing 5 [Source:HGNC Symbol;Acc:HGNC:30758]
ENSCJAG00000034922	KNOWN_BY_PROJECTION	protein_coding	TMEM174	chromosome:C_jacchus3.2.1:2:1:204313951:1	135301149	135303100	R	transmembrane protein 174 [Source:HGNC Symbol;Acc:HGNC:28187]
ENSCJAG00000034643	NOVEL	protein_coding	ENSCJAG00000034643	chromosome:C_jacchus3.2.1:4:1:171630274:1	25958023	25958711	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035340}  [Source:UniProtKB/TrEMBL;Acc:F7I1Q5]
ENSCJAG00000012575	KNOWN	protein_coding	FAM49B	chromosome:C_jacchus3.2.1:16:1:96796970:1	64754619	64850588	D	Protein FAM49B {ECO:0000313|EMBL:JAB08846.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023072}  [Source:UniProtKB/TrEMBL;Acc:F7IBC5]
ENSCJAG00000017717	KNOWN_BY_PROJECTION	protein_coding	NQO2	chromosome:C_jacchus3.2.1:4:1:171630274:1	25862789	25883625	R	NAD(P)H dehydrogenase, quinone 2 [Source:HGNC Symbol;Acc:HGNC:7856]
ENSCJAG00000016660	NOVEL	pseudogene	ENSCJAG00000016660	chromosome:C_jacchus3.2.1:2:1:204313951:1	134750303	134750613	D	<no descrition>
ENSCJAG00000016645	KNOWN_BY_PROJECTION	protein_coding	ARHGEF28	chromosome:C_jacchus3.2.1:2:1:204313951:1	134518382	134760432	R	Rho guanine nucleotide exchange factor (GEF) 28 [Source:HGNC Symbol;Acc:HGNC:30322]
ENSCJAG00000004325	KNOWN_BY_PROJECTION	protein_coding	ADCY8	chromosome:C_jacchus3.2.1:16:1:96796970:1	63641381	63901600	D	adenylate cyclase 8 (brain) [Source:HGNC Symbol;Acc:HGNC:239]
ENSCJAG00000016663	KNOWN	protein_coding	ENC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	133764825	133778178	D	Ectoderm-neural cortex protein 1 isoform 1 {ECO:0000313|EMBL:JAB06255.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030656}  [Source:UniProtKB/TrEMBL;Acc:F7ANZ0]
ENSCJAG00000004490	KNOWN_BY_PROJECTION	protein_coding	LRRC6	chromosome:C_jacchus3.2.1:16:1:96796970:1	62030454	62121574	D	leucine rich repeat containing 6 [Source:HGNC Symbol;Acc:HGNC:16725]
ENSCJAG00000015601	KNOWN	protein_coding	MAPRE1	chromosome:C_jacchus3.2.1:5:1:159171411:1	4428581	4452053	R	Microtubule-associated protein RP/EB family member 1 {ECO:0000313|EMBL:JAB29251.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028751}  [Source:UniProtKB/TrEMBL;Acc:F7A401]
ENSCJAG00000004502	KNOWN	protein_coding	PHF20L1	chromosome:C_jacchus3.2.1:16:1:96796970:1	61872440	61928138	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008240}  [Source:UniProtKB/TrEMBL;Acc:F7ID82]
ENSCJAG00000015596	KNOWN_BY_PROJECTION	protein_coding	EFCAB8	chromosome:C_jacchus3.2.1:5:1:159171411:1	4365120	4413595	R	EF-hand calcium binding domain 8 [Source:HGNC Symbol;Acc:HGNC:34532]
ENSCJAG00000012660	KNOWN	protein_coding	CBLN1	chromosome:C_jacchus3.2.1:20:1:44557958:1	2907362	2911110	R	Cerebellin-1 {ECO:0000313|EMBL:JAB18348.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023188}  [Source:UniProtKB/TrEMBL;Acc:F7HUP8]
ENSCJAG00000031491	NOVEL	protein_coding	ENSCJAG00000031491	chromosome:C_jacchus3.2.1:16:1:96796970:1	61848483	61862963	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008303}  [Source:UniProtKB/TrEMBL;Acc:F7HZ33]
ENSCJAG00000009277	KNOWN_BY_PROJECTION	protein_coding	DNAH3	chromosome:C_jacchus3.2.1:12:1:121768101:1	20379546	20544471	R	dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
ENSCJAG00000012640	KNOWN	protein_coding	N4BP1	chromosome:C_jacchus3.2.1:20:1:44557958:1	2080855	2156613	R	NEDD4-binding protein 1 {ECO:0000313|EMBL:JAB03928.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023174}  [Source:UniProtKB/TrEMBL;Acc:F7HUS5]
ENSCJAG00000004667	KNOWN_BY_PROJECTION	protein_coding	SLA	chromosome:C_jacchus3.2.1:16:1:96796970:1	61583855	61653980	D	Src-like-adaptor [Source:HGNC Symbol;Acc:HGNC:10902]
ENSCJAG00000001691	KNOWN_BY_PROJECTION	protein_coding	ASIC5	chromosome:C_jacchus3.2.1:3:1:190850796:1	36473825	36520146	D	acid sensing (proton gated) ion channel family member 5 [Source:HGNC Symbol;Acc:HGNC:17537]
ENSCJAG00000032353	NOVEL	protein_coding	ENSCJAG00000032353	chromosome:C_jacchus3.2.1:10:1:132174527:1	2244153	2245740	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052061}  [Source:UniProtKB/TrEMBL;Acc:F7IGY4]
ENSCJAG00000022726	KNOWN	protein_coding	GCNT3	chromosome:C_jacchus3.2.1:10:1:132174527:1	1916261	1924707	D	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 {ECO:0000313|EMBL:JAB02424.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041319}  [Source:UniProtKB/TrEMBL;Acc:F7FUY3]
ENSCJAG00000009358	KNOWN	protein_coding	DCUN1D3	chromosome:C_jacchus3.2.1:12:1:121768101:1	20274849	20277274	R	DCN1-like protein {ECO:0000256|RuleBase:RU410713}  [Source:UniProtKB/TrEMBL;Acc:F7IHC7]
ENSCJAG00000033156	NOVEL	pseudogene	ENSCJAG00000033156	chromosome:C_jacchus3.2.1:10:1:132174527:1	2107679	2108243	R	<no descrition>
ENSCJAG00000018611	KNOWN_BY_PROJECTION	protein_coding	SUN5	chromosome:C_jacchus3.2.1:5:1:159171411:1	4309201	4330582	D	Sad1 and UNC84 domain containing 5 [Source:HGNC Symbol;Acc:HGNC:16252]
ENSCJAG00000021096	KNOWN_BY_PROJECTION	protein_coding	COX14	chromosome:C_jacchus3.2.1:9:1:124281992:1	38910260	38917967	D	COX14 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:28216]
ENSCJAG00000017700	KNOWN_BY_PROJECTION	protein_coding	BPHL	chromosome:C_jacchus3.2.1:4:1:171630274:1	25735919	25772550	R	biphenyl hydrolase-like (serine hydrolase) [Source:HGNC Symbol;Acc:HGNC:1094]
ENSCJAG00000001666	KNOWN_BY_PROJECTION	protein_coding	CTSO	chromosome:C_jacchus3.2.1:3:1:190850796:1	36385113	36414751	D	cathepsin O [Source:HGNC Symbol;Acc:HGNC:2542]
ENSCJAG00000001661	NOVEL	protein_coding	ENSCJAG00000001661	chromosome:C_jacchus3.2.1:3:1:190850796:1	35679873	35680740	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002957}  [Source:UniProtKB/TrEMBL;Acc:F7HUW1]
ENSCJAG00000033338	NOVEL	protein_coding	ENSCJAG00000033338	chromosome:C_jacchus3.2.1:3:1:190850796:1	36298035	36298768	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7I816]
ENSCJAG00000018598	KNOWN_BY_PROJECTION	protein_coding	BPIFB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	4284996	4304317	R	BPI fold containing family B, member 2 [Source:HGNC Symbol;Acc:HGNC:16177]
ENSCJAG00000001653	KNOWN	protein_coding	PDGFC	chromosome:C_jacchus3.2.1:3:1:190850796:1	35260596	35476596	D	Platelet-derived growth factor C {ECO:0000313|EMBL:JAB04634.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002953}  [Source:UniProtKB/TrEMBL;Acc:F7HUW5]
ENSCJAG00000004715	KNOWN	protein_coding	NDRG1	chromosome:C_jacchus3.2.1:16:1:96796970:1	61399960	61460959	D	Protein NDRG1 isoform 1 {ECO:0000313|EMBL:JAB11699.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008717}  [Source:UniProtKB/TrEMBL;Acc:F7HMH9]
ENSCJAG00000018580	KNOWN_BY_PROJECTION	protein_coding	BPIFB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	4234523	4254210	R	BPI fold containing family B, member 3 [Source:HGNC Symbol;Acc:HGNC:16178]
ENSCJAG00000034914	KNOWN_BY_PROJECTION	protein_coding	BPIFB4	chromosome:C_jacchus3.2.1:5:1:159171411:1	4197169	4225696	R	BPI fold containing family B, member 4 [Source:HGNC Symbol;Acc:HGNC:16179]
ENSCJAG00000018544	KNOWN_BY_PROJECTION	protein_coding	BPIFA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	4159051	4174522	R	BPI fold containing family A, member 2 [Source:HGNC Symbol;Acc:HGNC:16203]
ENSCJAG00000009363	NOVEL	protein_coding	ENSCJAG00000009363	chromosome:C_jacchus3.2.1:12:1:121768101:1	20215620	20263778	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017186}  [Source:UniProtKB/TrEMBL;Acc:F7I7Y5]
ENSCJAG00000018565	KNOWN_BY_PROJECTION	protein_coding	BPIFA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	4116831	4128089	R	BPI fold containing family A, member 3 [Source:HGNC Symbol;Acc:HGNC:16204]
ENSCJAG00000004293	KNOWN	protein_coding	FAM135B	chromosome:C_jacchus3.2.1:16:1:96796970:1	56256489	56611266	D	Protein FAM135B {ECO:0000313|EMBL:JAB17773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007801}  [Source:UniProtKB/TrEMBL;Acc:F6ULA7]
ENSCJAG00000016911	KNOWN	protein_coding	COX5B	chromosome:C_jacchus3.2.1:2:1:204313951:1	133523273	133524905	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031119}  [Source:UniProtKB/TrEMBL;Acc:F7IRX3]
ENSCJAG00000009499	KNOWN	protein_coding	THUMPD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	20128658	20136649	R	THUMP domain-containing protein 1 {ECO:0000313|EMBL:JAB10076.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017405}  [Source:UniProtKB/TrEMBL;Acc:F7I2Z0]
ENSCJAG00000016919	KNOWN	protein_coding	ACTR1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	133507181	133515907	D	Beta-centractin {ECO:0000313|EMBL:JAB11143.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031142}  [Source:UniProtKB/TrEMBL;Acc:F7IPJ9]
ENSCJAG00000021049	KNOWN_BY_PROJECTION	protein_coding	AQP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	38731522	38736271	D	aquaporin 2 (collecting duct) [Source:HGNC Symbol;Acc:HGNC:634]
ENSCJAG00000004208	NOVEL	protein_coding	ENSCJAG00000004208	chromosome:C_jacchus3.2.1:16:1:96796970:1	54223237	54224121	R	ATP synthase subunit gamma {ECO:0000256|RuleBase:RU004001}  [Source:UniProtKB/TrEMBL;Acc:F6PGU3]
ENSCJAG00000017623	KNOWN	protein_coding	PSMG4	chromosome:C_jacchus3.2.1:4:1:171630274:1	25620079	25629298	R	Proteasome assembly chaperone 4 isoform b {ECO:0000313|EMBL:JAB01818.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044644}  [Source:UniProtKB/TrEMBL;Acc:F7D018]
ENSCJAG00000007534	KNOWN	protein_coding	NETO2	chromosome:C_jacchus3.2.1:20:1:44557958:1	533101	595626	R	Neuropilin and tolloid-like protein 2 isoform 1 {ECO:0000313|EMBL:JAB27219.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014020}  [Source:UniProtKB/TrEMBL;Acc:F7I2J9]
ENSCJAG00000004132	KNOWN	protein_coding	AGO2	chromosome:C_jacchus3.2.1:16:1:96796970:1	54035693	54152594	D	Protein argonaute-2 {ECO:0000256|HAMAP-Rule:MF_03031}  [Source:UniProtKB/TrEMBL;Acc:F6QND0]
ENSCJAG00000007575	NOVEL	protein_coding	ENSCJAG00000007575	chromosome:C_jacchus3.2.1:20:1:44557958:1	396957	402239	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014063}  [Source:UniProtKB/TrEMBL;Acc:F7HVI9]
ENSCJAG00000009414	NOVEL	protein_coding	ENSCJAG00000009414	chromosome:C_jacchus3.2.1:12:1:121768101:1	20079344	20109032	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017356}  [Source:UniProtKB/TrEMBL;Acc:F7ICF7]
ENSCJAG00000016943	KNOWN_BY_PROJECTION	protein_coding	ANKRD31	chromosome:C_jacchus3.2.1:2:1:204313951:1	133113826	133304432	D	ankyrin repeat domain 31 [Source:HGNC Symbol;Acc:HGNC:26853]
ENSCJAG00000007552	KNOWN	protein_coding	DNAJA2	chromosome:C_jacchus3.2.1:20:1:44557958:1	383737	402990	R	DnaJ homolog subfamily A member 2 {ECO:0000313|EMBL:JAB06955.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014060}  [Source:UniProtKB/TrEMBL;Acc:F7HVJ2]
ENSCJAG00000004117	NOVEL	pseudogene	ENSCJAG00000004117	chromosome:C_jacchus3.2.1:16:1:96796970:1	54022140	54022540	D	<no descrition>
ENSCJAG00000004113	NOVEL	pseudogene	ENSCJAG00000004113	chromosome:C_jacchus3.2.1:16:1:96796970:1	53855843	53856267	R	<no descrition>
ENSCJAG00000020373	KNOWN_BY_PROJECTION	protein_coding	RNF111	chromosome:C_jacchus3.2.1:10:1:132174527:1	1252134	1318258	D	ring finger protein 111 [Source:HGNC Symbol;Acc:HGNC:17384]
ENSCJAG00000007578	KNOWN_BY_PROJECTION	protein_coding	GPT2	chromosome:C_jacchus3.2.1:20:1:44557958:1	324355	366314	D	glutamic pyruvate transaminase (alanine aminotransferase) 2 [Source:HGNC Symbol;Acc:HGNC:18062]
ENSCJAG00000017606	KNOWN	protein_coding	SLC22A23	chromosome:C_jacchus3.2.1:4:1:171630274:1	25424626	25619147	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032452}  [Source:UniProtKB/TrEMBL;Acc:F7D1N1]
ENSCJAG00000010287	KNOWN_BY_PROJECTION	protein_coding	MYLK3	chromosome:C_jacchus3.2.1:20:1:44557958:1	141084	204508	R	myosin light chain kinase 3 [Source:HGNC Symbol;Acc:HGNC:29826]
ENSCJAG00000017601	KNOWN	protein_coding	FAM50B	chromosome:C_jacchus3.2.1:4:1:171630274:1	25018771	25019757	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052085}  [Source:UniProtKB/TrEMBL;Acc:F7IEM7]
ENSCJAG00000035473	NOVEL	protein_coding	ENSCJAG00000035473	chromosome:C_jacchus3.2.1:4:1:171630274:1	24900131	24942566	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010555}  [Source:UniProtKB/TrEMBL;Acc:F7ID89]
ENSCJAG00000016954	KNOWN	protein_coding	HMGCR	chromosome:C_jacchus3.2.1:2:1:204313951:1	133017964	133045477	R	3-hydroxy-3-methylglutaryl-Coenzyme A reductase isoform 1 {ECO:0000313|EMBL:JAB10958.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031281}  [Source:UniProtKB/TrEMBL;Acc:F7IAE4]
ENSCJAG00000010203	KNOWN	protein_coding	VPS35	chromosome:C_jacchus3.2.1:20:1:44557958:1	44541	122375	R	Vacuolar protein sorting-associated protein 35 {ECO:0000256|PIRNR:PIRNR009375}  [Source:UniProtKB/TrEMBL;Acc:F7H0E8]
ENSCJAG00000036244	KNOWN_BY_PROJECTION	protein_coding	ACSM5	chromosome:C_jacchus3.2.1:12:1:121768101:1	20020580	20058038	D	acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
ENSCJAG00000021045	KNOWN	protein_coding	FAIM2	chromosome:C_jacchus3.2.1:9:1:124281992:1	38645935	38675404	R	Protein lifeguard 2 {ECO:0000313|EMBL:JAB13629.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048315}  [Source:UniProtKB/TrEMBL;Acc:F7GY56]
ENSCJAG00000017020	KNOWN_BY_PROJECTION	protein_coding	COL4A3BP	chromosome:C_jacchus3.2.1:2:1:204313951:1	132915671	133005853	D	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein [Source:HGNC Symbol;Acc:HGNC:2205]
ENSCJAG00000032237	NOVEL	protein_coding	ENSCJAG00000032237	scaffold:C_jacchus3.2.1:GL285768.1:1:126350:1	70397	73261	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025753}  [Source:UniProtKB/TrEMBL;Acc:H9KX23]
ENSCJAG00000010394	KNOWN_BY_PROJECTION	protein_coding	GPR20	chromosome:C_jacchus3.2.1:16:1:96796970:1	53260749	53272936	D	G protein-coupled receptor 20 [Source:HGNC Symbol;Acc:HGNC:4475]
ENSCJAG00000033700	NOVEL	protein_coding	ENSCJAG00000033700	scaffold:C_jacchus3.2.1:ACFV01187225.1:1:8779:1	968	1419	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044124}  [Source:UniProtKB/TrEMBL;Acc:H9KY22]
ENSCJAG00000011423	NOVEL	pseudogene	ENSCJAG00000011423	scaffold:C_jacchus3.2.1:GL286407.1:1:12850:1	6298	8739	R	<no descrition>
ENSCJAG00000000707	NOVEL	pseudogene	ENSCJAG00000000707	scaffold:C_jacchus3.2.1:ACFV01194517.1:1:3686:1	2643	3287	D	<no descrition>
ENSCJAG00000010376	KNOWN_BY_PROJECTION	protein_coding	PTP4A3	chromosome:C_jacchus3.2.1:16:1:96796970:1	53189477	53200866	R	protein tyrosine phosphatase type IVA, member 3 [Source:HGNC Symbol;Acc:HGNC:9636]
ENSCJAG00000021042	KNOWN_BY_PROJECTION	protein_coding	BCDIN3D	chromosome:C_jacchus3.2.1:9:1:124281992:1	38615492	38621112	R	BCDIN3 domain containing [Source:HGNC Symbol;Acc:HGNC:27050]
ENSCJAG00000034053	NOVEL	protein_coding	ENSCJAG00000034053	chromosome:C_jacchus3.2.1:16:1:96796970:1	52708102	52709347	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048369}  [Source:UniProtKB/TrEMBL;Acc:F7GE23]
ENSCJAG00000021038	KNOWN_BY_PROJECTION	protein_coding	NCKAP5L	chromosome:C_jacchus3.2.1:9:1:124281992:1	38561057	38606114	R	NCK-associated protein 5-like [Source:HGNC Symbol;Acc:HGNC:29321]
ENSCJAG00000012137	KNOWN	protein_coding	ARC	chromosome:C_jacchus3.2.1:16:1:96796970:1	52029063	52033241	D	Activity-regulated cytoskeleton-associated protein {ECO:0000313|EMBL:JAB13051.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022275}  [Source:UniProtKB/TrEMBL;Acc:F7BU20]
ENSCJAG00000001546	KNOWN_BY_PROJECTION	protein_coding	TMEM144	chromosome:C_jacchus3.2.1:3:1:190850796:1	33904892	33953105	R	transmembrane protein 144 [Source:HGNC Symbol;Acc:HGNC:25633]
ENSCJAG00000017052	KNOWN_BY_PROJECTION	protein_coding	POLK	chromosome:C_jacchus3.2.1:2:1:204313951:1	132780655	132830188	R	polymerase (DNA directed) kappa [Source:HGNC Symbol;Acc:HGNC:9183]
ENSCJAG00000021451	KNOWN_BY_PROJECTION	protein_coding	GPIHBP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	51444205	51447357	R	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24945]
ENSCJAG00000021023	KNOWN_BY_PROJECTION	protein_coding	FMNL3	chromosome:C_jacchus3.2.1:9:1:124281992:1	38419732	38483118	R	formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
ENSCJAG00000035955	KNOWN_BY_PROJECTION	protein_coding	ZNF696	chromosome:C_jacchus3.2.1:16:1:96796970:1	51360192	51363464	R	zinc finger protein 696 [Source:HGNC Symbol;Acc:HGNC:25872]
ENSCJAG00000017129	KNOWN_BY_PROJECTION	protein_coding	ANKDD1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	132715990	132772125	R	ankyrin repeat and death domain containing 1B [Source:HGNC Symbol;Acc:HGNC:32525]
ENSCJAG00000021444	KNOWN_BY_PROJECTION	protein_coding	RHPN1	chromosome:C_jacchus3.2.1:16:1:96796970:1	51300568	51309560	R	rhophilin, Rho GTPase binding protein 1 [Source:HGNC Symbol;Acc:HGNC:19973]
ENSCJAG00000021443	NOVEL	pseudogene	ENSCJAG00000021443	chromosome:C_jacchus3.2.1:16:1:96796970:1	51250248	51250734	D	<no descrition>
ENSCJAG00000001624	KNOWN_BY_PROJECTION	protein_coding	DIP2A	chromosome:C_jacchus3.2.1:21:1:50472720:1	50248356	50358013	D	DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
ENSCJAG00000021439	KNOWN_BY_PROJECTION	protein_coding	ZC3H3	chromosome:C_jacchus3.2.1:16:1:96796970:1	51143319	51241048	D	zinc finger CCCH-type containing 3 [Source:HGNC Symbol;Acc:HGNC:28972]
ENSCJAG00000021434	KNOWN_BY_PROJECTION	protein_coding	GSDMD	chromosome:C_jacchus3.2.1:16:1:96796970:1	51100517	51104202	R	gasdermin D [Source:HGNC Symbol;Acc:HGNC:25697]
ENSCJAG00000009618	KNOWN_BY_PROJECTION	protein_coding	IQCK	chromosome:C_jacchus3.2.1:12:1:121768101:1	19306735	19463913	D	IQ motif containing K [Source:HGNC Symbol;Acc:HGNC:28556]
ENSCJAG00000021413	KNOWN_BY_PROJECTION	protein_coding	PYCRL	chromosome:C_jacchus3.2.1:16:1:96796970:1	51052507	51102294	D	pyrroline-5-carboxylate reductase-like [Source:HGNC Symbol;Acc:HGNC:25846]
ENSCJAG00000020982	KNOWN_BY_PROJECTION	protein_coding	PRPF40B	chromosome:C_jacchus3.2.1:9:1:124281992:1	38397523	38419445	D	PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
ENSCJAG00000021380	KNOWN_BY_PROJECTION	protein_coding	C6orf201	chromosome:C_jacchus3.2.1:4:1:171630274:1	24620146	24697421	R	chromosome 6 open reading frame 201 [Source:HGNC Symbol;Acc:HGNC:21620]
ENSCJAG00000001842	KNOWN_BY_PROJECTION	protein_coding	SPATC1L	chromosome:C_jacchus3.2.1:21:1:50472720:1	49932032	49950904	R	spermatogenesis and centriole associated 1-like [Source:HGNC Symbol;Acc:HGNC:1298]
ENSCJAG00000021485	KNOWN	protein_coding	PUF60	chromosome:C_jacchus3.2.1:16:1:96796970:1	50836110	50849030	D	Poly(U)-binding-splicing factor PUF60 isoform b {ECO:0000313|EMBL:JAB30388.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040008}  [Source:UniProtKB/TrEMBL;Acc:F7ILN8]
ENSCJAG00000002282	KNOWN	protein_coding	ALDH1A2	chromosome:C_jacchus3.2.1:10:1:132174527:1	105765	215464	R	Retinal dehydrogenase 2 isoform 1 {ECO:0000313|EMBL:JAB07275.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048483}  [Source:UniProtKB/TrEMBL;Acc:F7H8D6]
ENSCJAG00000021482	KNOWN_BY_PROJECTION	protein_coding	NRBP2	chromosome:C_jacchus3.2.1:16:1:96796970:1	50827287	50832385	D	nuclear receptor binding protein 2 [Source:HGNC Symbol;Acc:HGNC:19339]
ENSCJAG00000001903	KNOWN_BY_PROJECTION	protein_coding	PCBP3	chromosome:C_jacchus3.2.1:21:1:50472720:1	49675814	49724781	D	poly(rC) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:8651]
ENSCJAG00000001943	KNOWN_BY_PROJECTION	protein_coding	SLC19A1	chromosome:C_jacchus3.2.1:21:1:50472720:1	49310515	49331622	R	solute carrier family 19 (folate transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10937]
ENSCJAG00000004222	NOVEL	protein_coding	ENSCJAG00000004222	chromosome:C_jacchus3.2.1:21:1:50472720:1	49290358	49290832	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007659}  [Source:UniProtKB/TrEMBL;Acc:F6TYZ9]
ENSCJAG00000032490	KNOWN_BY_PROJECTION	protein_coding	COL18A1	chromosome:C_jacchus3.2.1:21:1:50472720:1	49254089	49306698	D	collagen, type XVIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2195]
ENSCJAG00000021472	KNOWN_BY_PROJECTION	protein_coding	PLEC	chromosome:C_jacchus3.2.1:16:1:96796970:1	50704543	50743676	D	plectin [Source:HGNC Symbol;Acc:HGNC:9069]
ENSCJAG00000008942	NOVEL	protein_coding	ENSCJAG00000008942	chromosome:C_jacchus3.2.1:21:1:50472720:1	49221851	49223350	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016350}  [Source:UniProtKB/TrEMBL;Acc:F7B7B9]
ENSCJAG00000018633	KNOWN	protein_coding	POFUT2	chromosome:C_jacchus3.2.1:21:1:50472720:1	49074924	49098571	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034627}  [Source:UniProtKB/TrEMBL;Acc:F7HN90]
ENSCJAG00000001487	KNOWN	protein_coding	C4ORF46	chromosome:C_jacchus3.2.1:3:1:190850796:1	33493151	33499648	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002653}; Uncharacterized protein C4orf46 {ECO:0000313|EMBL:JAB03134.1}  [Source:UniProtKB/TrEMBL;Acc:F7I271]
ENSCJAG00000032317	NOVEL	protein_coding	ENSCJAG00000032317	chromosome:C_jacchus3.2.1:3:1:190850796:1	33475194	33476448	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046702}  [Source:UniProtKB/TrEMBL;Acc:F7IAS6]
ENSCJAG00000020977	KNOWN_BY_PROJECTION	protein_coding	FAM186B	chromosome:C_jacchus3.2.1:9:1:124281992:1	38352702	38379535	R	family with sequence similarity 186, member B [Source:HGNC Symbol;Acc:HGNC:25296]
ENSCJAG00000019985	KNOWN	protein_coding	IQGAP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	131625151	131943610	R	Ras GTPase-activating-like protein IQGAP2 {ECO:0000313|EMBL:JAB21962.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037250}  [Source:UniProtKB/TrEMBL;Acc:F6W1R9]
ENSCJAG00000021466	KNOWN_BY_PROJECTION	protein_coding	GRINA	chromosome:C_jacchus3.2.1:16:1:96796970:1	50654282	50656854	R	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) [Source:HGNC Symbol;Acc:HGNC:4589]
ENSCJAG00000010599	KNOWN_BY_PROJECTION	protein_coding	FAM207A	chromosome:C_jacchus3.2.1:21:1:50472720:1	48753641	48803695	D	family with sequence similarity 207, member A [Source:HGNC Symbol;Acc:HGNC:15811]
ENSCJAG00000021464	KNOWN_BY_PROJECTION	protein_coding	SPATC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50611857	50641505	R	spermatogenesis and centriole associated 1 [Source:HGNC Symbol;Acc:HGNC:30510]
ENSCJAG00000010591	NOVEL	protein_coding	ENSCJAG00000010591	chromosome:C_jacchus3.2.1:21:1:50472720:1	48746064	48753308	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019535}  [Source:UniProtKB/TrEMBL;Acc:F6RI78]
ENSCJAG00000021459	KNOWN_BY_PROJECTION	protein_coding	OPLAH	chromosome:C_jacchus3.2.1:16:1:96796970:1	50598134	50607007	D	5-oxoprolinase (ATP-hydrolysing) [Source:HGNC Symbol;Acc:HGNC:8149]
ENSCJAG00000010554	KNOWN_BY_PROJECTION	protein_coding	ITGB2	chromosome:C_jacchus3.2.1:21:1:50472720:1	48691967	48717579	R	integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) [Source:HGNC Symbol;Acc:HGNC:6155]
ENSCJAG00000021458	KNOWN	protein_coding	EXOSC4	chromosome:C_jacchus3.2.1:16:1:96796970:1	50577629	50579625	R	Exosome complex component RRP41 {ECO:0000313|EMBL:JAB34317.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039934}  [Source:UniProtKB/TrEMBL;Acc:F7HJR4]
ENSCJAG00000019983	KNOWN	protein_coding	F2R	chromosome:C_jacchus3.2.1:2:1:204313951:1	131591979	131617903	R	Proteinase-activated receptor 1 {ECO:0000313|EMBL:JAB16334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037168}  [Source:UniProtKB/TrEMBL;Acc:F7B181]
ENSCJAG00000010532	KNOWN	protein_coding	PTTG1IP	chromosome:C_jacchus3.2.1:21:1:50472720:1	48661633	48681330	R	Pituitary tumor-transforming gene 1 protein-interacting protein {ECO:0000313|EMBL:JAB03458.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019443}  [Source:UniProtKB/TrEMBL;Acc:F6TEN1]
ENSCJAG00000010529	NOVEL	protein_coding	ENSCJAG00000010529	chromosome:C_jacchus3.2.1:21:1:50472720:1	48618111	48625622	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019420}  [Source:UniProtKB/TrEMBL;Acc:F6U0R0]
ENSCJAG00000019980	KNOWN_BY_PROJECTION	protein_coding	S100Z	chromosome:C_jacchus3.2.1:2:1:204313951:1	131443314	131454912	R	S100 calcium binding protein Z [Source:HGNC Symbol;Acc:HGNC:30367]
ENSCJAG00000021454	KNOWN_BY_PROJECTION	protein_coding	CYC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50561498	50563185	R	cytochrome c-1 [Source:HGNC Symbol;Acc:HGNC:2579]
ENSCJAG00000009768	KNOWN	protein_coding	CCP110	chromosome:C_jacchus3.2.1:12:1:121768101:1	19099534	19126604	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017970}  [Source:UniProtKB/TrEMBL;Acc:F7I7B5]
ENSCJAG00000021450	KNOWN	protein_coding	MAF1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50551179	50554353	R	Repressor of RNA polymerase III transcription MAF1 homolog {ECO:0000313|EMBL:JAB08882.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039922}  [Source:UniProtKB/TrEMBL;Acc:F7DAR7]
ENSCJAG00000000296	KNOWN_BY_PROJECTION	protein_coding	KRTAP10-7	chromosome:C_jacchus3.2.1:21:1:50472720:1	48363224	48410929	R	keratin associated protein 10-7 [Source:HGNC Symbol;Acc:HGNC:22970]
ENSCJAG00000015322	KNOWN_BY_PROJECTION	protein_coding	LRRC3	chromosome:C_jacchus3.2.1:21:1:50472720:1	48275708	48279402	D	leucine rich repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:14965]
ENSCJAG00000009810	KNOWN	protein_coding	GDE1	chromosome:C_jacchus3.2.1:12:1:121768101:1	19076493	19097296	R	Glycerophosphodiester phosphodiesterase 1 {ECO:0000313|EMBL:JAB10831.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017992}  [Source:UniProtKB/TrEMBL;Acc:F7I4Y1]
ENSCJAG00000021447	KNOWN_BY_PROJECTION	protein_coding	KIAA1875	chromosome:C_jacchus3.2.1:16:1:96796970:1	50541086	50551037	R	KIAA1875 [Source:HGNC Symbol;Acc:HGNC:26959]
ENSCJAG00000019970	KNOWN	protein_coding	CRHBP	chromosome:C_jacchus3.2.1:2:1:204313951:1	131398545	131415655	R	Corticotropin-releasing factor-binding protein {ECO:0000313|EMBL:JAB11994.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037154}  [Source:UniProtKB/TrEMBL;Acc:F7B2C4]
ENSCJAG00000021446	KNOWN_BY_PROJECTION	protein_coding	HGH1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50510270	50513045	R	HGH1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24161]
ENSCJAG00000021373	KNOWN_BY_PROJECTION	protein_coding	RPP40	chromosome:C_jacchus3.2.1:4:1:171630274:1	23677810	23686892	D	ribonuclease P/MRP 40kDa subunit [Source:HGNC Symbol;Acc:HGNC:20992]
ENSCJAG00000031645	NOVEL	protein_coding	ENSCJAG00000031645	chromosome:C_jacchus3.2.1:16:1:96796970:1	50506955	50509600	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042402}  [Source:UniProtKB/TrEMBL;Acc:F7BRZ0]
ENSCJAG00000021441	KNOWN_BY_PROJECTION	protein_coding	SCX	chromosome:C_jacchus3.2.1:16:1:96796970:1	50381921	50383246	R	scleraxis basic helix-loop-helix transcription factor [Source:HGNC Symbol;Acc:HGNC:32322]
ENSCJAG00000021371	KNOWN_BY_PROJECTION	protein_coding	PPP1R3G	chromosome:C_jacchus3.2.1:4:1:171630274:1	23578924	23579830	R	protein phosphatase 1, regulatory subunit 3G [Source:HGNC Symbol;Acc:HGNC:14945]
ENSCJAG00000021370	KNOWN	protein_coding	LYRM4	chromosome:C_jacchus3.2.1:4:1:171630274:1	23397583	23557715	D	LYR motif-containing protein 4 isoform 1 {ECO:0000313|EMBL:JAB23813.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039771}  [Source:UniProtKB/TrEMBL;Acc:F7H9P8]
ENSCJAG00000017570	KNOWN_BY_PROJECTION	protein_coding	TRPM2	chromosome:C_jacchus3.2.1:21:1:50472720:1	48183279	48410833	D	transient receptor potential cation channel, subfamily M, member 2 [Source:HGNC Symbol;Acc:HGNC:12339]
ENSCJAG00000021369	KNOWN	protein_coding	FARS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	22866926	23397191	R	Phenylalanine--tRNA ligase, mitochondrial {ECO:0000313|EMBL:JAB24699.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039770}  [Source:UniProtKB/TrEMBL;Acc:F7H9Q0]
ENSCJAG00000001437	KNOWN	protein_coding	PPID	chromosome:C_jacchus3.2.1:3:1:190850796:1	33441485	33456068	D	Peptidyl-prolyl cis-trans isomerase D {ECO:0000313|EMBL:JAB04127.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002559}  [Source:UniProtKB/TrEMBL;Acc:F7IL08]
ENSCJAG00000021442	NOVEL	protein_coding	ENSCJAG00000021442	chromosome:C_jacchus3.2.1:16:1:96796970:1	50379017	50503339	R	<no descrition>
ENSCJAG00000015329	KNOWN_BY_PROJECTION	protein_coding	TSPEAR	chromosome:C_jacchus3.2.1:21:1:50472720:1	48145849	48527911	R	thrombospondin-type laminin G domain and EAR repeats [Source:HGNC Symbol;Acc:HGNC:1268]
ENSCJAG00000021363	KNOWN_BY_PROJECTION	protein_coding	LY86	chromosome:C_jacchus3.2.1:4:1:171630274:1	21979585	22041810	R	lymphocyte antigen 86 [Source:HGNC Symbol;Acc:HGNC:16837]
ENSCJAG00000017630	KNOWN_BY_PROJECTION	protein_coding	PFKL	chromosome:C_jacchus3.2.1:21:1:50472720:1	48131735	48157495	D	phosphofructokinase, liver [Source:HGNC Symbol;Acc:HGNC:8876]
ENSCJAG00000003555	NOVEL	pseudogene	ENSCJAG00000003555	chromosome:C_jacchus3.2.1:21:1:50472720:1	48091360	48092333	R	<no descrition>
ENSCJAG00000003567	NOVEL	protein_coding	ENSCJAG00000003567	chromosome:C_jacchus3.2.1:21:1:50472720:1	48060815	48082077	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006474}  [Source:UniProtKB/TrEMBL;Acc:F7GQS0]
ENSCJAG00000001410	KNOWN_BY_PROJECTION	protein_coding	FNIP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	33252942	33352989	R	folliculin interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:29280]
ENSCJAG00000034231	NOVEL	protein_coding	ENSCJAG00000034231	chromosome:C_jacchus3.2.1:3:1:190850796:1	33152292	33152986	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013381}  [Source:UniProtKB/TrEMBL;Acc:F6ZZV1]
ENSCJAG00000021427	KNOWN_BY_PROJECTION	protein_coding	FBXL6	chromosome:C_jacchus3.2.1:16:1:96796970:1	50292464	50295946	D	F-box and leucine-rich repeat protein 6 [Source:HGNC Symbol;Acc:HGNC:13603]
ENSCJAG00000032624	NOVEL	pseudogene	ENSCJAG00000032624	chromosome:C_jacchus3.2.1:3:1:190850796:1	33137291	33137613	R	<no descrition>
ENSCJAG00000021425	KNOWN_BY_PROJECTION	protein_coding	SLC52A2	chromosome:C_jacchus3.2.1:16:1:96796970:1	50289686	50291663	R	solute carrier family 52 (riboflavin transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:30224]
ENSCJAG00000009819	KNOWN_BY_PROJECTION	protein_coding	TMC5	chromosome:C_jacchus3.2.1:12:1:121768101:1	19014251	19071492	D	transmembrane channel-like 5 [Source:HGNC Symbol;Acc:HGNC:22999]
ENSCJAG00000021421	KNOWN_BY_PROJECTION	protein_coding	CPSF1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50235542	50253617	D	cleavage and polyadenylation specific factor 1, 160kDa [Source:HGNC Symbol;Acc:HGNC:2324]
ENSCJAG00000005570	KNOWN	protein_coding	PWP2	chromosome:C_jacchus3.2.1:21:1:50472720:1	47930571	47956179	D	Periodic tryptophan protein 2 homolog {ECO:0000313|EMBL:JAB14743.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010226}  [Source:UniProtKB/TrEMBL;Acc:F6V9M8]
ENSCJAG00000001403	KNOWN_BY_PROJECTION	protein_coding	C4orf45	chromosome:C_jacchus3.2.1:3:1:190850796:1	33127608	33257521	D	chromosome 4 open reading frame 45 [Source:HGNC Symbol;Acc:HGNC:26342]
ENSCJAG00000021420	KNOWN_BY_PROJECTION	protein_coding	SLC39A4	chromosome:C_jacchus3.2.1:16:1:96796970:1	50228777	50232964	D	solute carrier family 39 (zinc transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:17129]
ENSCJAG00000009901	KNOWN_BY_PROJECTION	protein_coding	CLEC19A	chromosome:C_jacchus3.2.1:12:1:121768101:1	18891001	18920062	D	C-type lectin domain family 19, member A [Source:HGNC Symbol;Acc:HGNC:34522]
ENSCJAG00000005608	NOVEL	protein_coding	ENSCJAG00000005608	chromosome:C_jacchus3.2.1:21:1:50472720:1	47836883	47929799	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010260}  [Source:UniProtKB/TrEMBL;Acc:F7CPS6]
ENSCJAG00000035539	NOVEL	pseudogene	ENSCJAG00000035539	chromosome:C_jacchus3.2.1:21:1:50472720:1	47805200	47805728	R	<no descrition>
ENSCJAG00000033008	NOVEL	pseudogene	ENSCJAG00000033008	chromosome:C_jacchus3.2.1:21:1:50472720:1	47681369	47681714	R	<no descrition>
ENSCJAG00000017108	NOVEL	protein_coding	ENSCJAG00000017108	chromosome:C_jacchus3.2.1:21:1:50472720:1	47603175	47607816	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031435}  [Source:UniProtKB/TrEMBL;Acc:F7IF13]
ENSCJAG00000031885	KNOWN_BY_PROJECTION	protein_coding	PDXK	chromosome:C_jacchus3.2.1:21:1:50472720:1	47546164	47586514	D	pyridoxal (pyridoxine, vitamin B6) kinase [Source:HGNC Symbol;Acc:HGNC:8819]
ENSCJAG00000019999	KNOWN	protein_coding	COQ7	chromosome:C_jacchus3.2.1:12:1:121768101:1	18674519	18684282	D	Ubiquinone biosynthesis protein COQ7 homolog isoform 1 {ECO:0000313|EMBL:JAB04024.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037205}  [Source:UniProtKB/TrEMBL;Acc:F6XXM7]
ENSCJAG00000017077	KNOWN	protein_coding	RRP1B	chromosome:C_jacchus3.2.1:21:1:50472720:1	47480963	47641549	D	Ribosomal RNA processing protein 1 homolog B {ECO:0000313|EMBL:JAB15550.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031431}  [Source:UniProtKB/TrEMBL;Acc:F7IF19]
ENSCJAG00000021411	KNOWN_BY_PROJECTION	protein_coding	TONSL	chromosome:C_jacchus3.2.1:16:1:96796970:1	50202559	50218411	D	tonsoku-like, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:7801]
ENSCJAG00000017067	KNOWN_BY_PROJECTION	protein_coding	HSF2BP	chromosome:C_jacchus3.2.1:21:1:50472720:1	47371998	47480798	R	heat shock transcription factor 2 binding protein [Source:HGNC Symbol;Acc:HGNC:5226]
ENSCJAG00000020004	NOVEL	pseudogene	ENSCJAG00000020004	chromosome:C_jacchus3.2.1:12:1:121768101:1	18607980	18608696	R	<no descrition>
ENSCJAG00000020919	KNOWN_BY_PROJECTION	protein_coding	DNAJC22	chromosome:C_jacchus3.2.1:9:1:124281992:1	38119605	38124358	D	DnaJ (Hsp40) homolog, subfamily C, member 22 [Source:HGNC Symbol;Acc:HGNC:25802]
ENSCJAG00000015879	KNOWN	protein_coding	SIK1	chromosome:C_jacchus3.2.1:21:1:50472720:1	47262348	47272028	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029246}  [Source:UniProtKB/TrEMBL;Acc:F7HLQ7]
ENSCJAG00000020917	KNOWN	protein_coding	C1QL4	chromosome:C_jacchus3.2.1:9:1:124281992:1	38104807	38109508	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038915}  [Source:UniProtKB/TrEMBL;Acc:F7ISX3]
ENSCJAG00000018298	NOVEL	pseudogene	ENSCJAG00000018298	chromosome:C_jacchus3.2.1:3:1:190850796:1	30653292	30653782	R	<no descrition>
ENSCJAG00000015824	KNOWN	protein_coding	CBS	chromosome:C_jacchus3.2.1:21:1:50472720:1	46923524	46943261	R	Cystathionine beta-synthase {ECO:0000313|EMBL:JAB08099.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045541}  [Source:UniProtKB/TrEMBL;Acc:F6SUE8]
ENSCJAG00000021353	NOVEL	pseudogene	ENSCJAG00000021353	chromosome:C_jacchus3.2.1:4:1:171630274:1	21273691	21274419	D	<no descrition>
ENSCJAG00000021352	NOVEL	pseudogene	ENSCJAG00000021352	chromosome:C_jacchus3.2.1:4:1:171630274:1	21252459	21253047	D	<no descrition>
ENSCJAG00000001011	NOVEL	protein_coding	ENSCJAG00000001011	chromosome:C_jacchus3.2.1:3:1:190850796:1	28906833	28907393	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013678}  [Source:UniProtKB/TrEMBL;Acc:F7AXY7]
ENSCJAG00000020910	KNOWN_BY_PROJECTION	protein_coding	TROAP	chromosome:C_jacchus3.2.1:9:1:124281992:1	38094874	38104186	D	trophinin associated protein [Source:HGNC Symbol;Acc:HGNC:12327]
ENSCJAG00000021406	KNOWN_BY_PROJECTION	protein_coding	SCRT1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50146210	50320170	D	scratch family zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:15950]
ENSCJAG00000015798	KNOWN_BY_PROJECTION	protein_coding	PKNOX1	chromosome:C_jacchus3.2.1:21:1:50472720:1	46841025	46904748	D	PBX/knotted 1 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9022]
ENSCJAG00000020894	KNOWN_BY_PROJECTION	protein_coding	TUBA1A	chromosome:C_jacchus3.2.1:9:1:124281992:1	37963778	37968271	R	tubulin, alpha 1a [Source:HGNC Symbol;Acc:HGNC:20766]
ENSCJAG00000015789	NOVEL	pseudogene	ENSCJAG00000015789	chromosome:C_jacchus3.2.1:21:1:50472720:1	46814574	46816020	R	<no descrition>
ENSCJAG00000015786	KNOWN	protein_coding	NDUFV3	chromosome:C_jacchus3.2.1:21:1:50472720:1	46782660	46800061	D	NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial isoform b {ECO:0000313|EMBL:JAB03202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029057}  [Source:UniProtKB/TrEMBL;Acc:F7IRU9]
ENSCJAG00000012406	KNOWN	protein_coding	NAF1	chromosome:C_jacchus3.2.1:3:1:190850796:1	28568804	28610044	D	H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform a {ECO:0000313|EMBL:JAB18163.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022748}  [Source:UniProtKB/TrEMBL;Acc:F7ICZ5]
ENSCJAG00000015778	KNOWN_BY_PROJECTION	protein_coding	WDR4	chromosome:C_jacchus3.2.1:21:1:50472720:1	46742322	46777171	R	WD repeat domain 4 [Source:HGNC Symbol;Acc:HGNC:12756]
ENSCJAG00000012452	KNOWN	protein_coding	NPY5R	chromosome:C_jacchus3.2.1:3:1:190850796:1	28375850	28384093	R	Neuropeptide Y receptor type 5 {ECO:0000313|EMBL:JAB14560.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022813}  [Source:UniProtKB/TrEMBL;Acc:F7HYU7]
ENSCJAG00000005291	KNOWN_BY_PROJECTION	protein_coding	SLC37A1	chromosome:C_jacchus3.2.1:21:1:50472720:1	46430969	46510118	D	solute carrier family 37 (glucose-6-phosphate transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11024]
ENSCJAG00000021401	KNOWN_BY_PROJECTION	protein_coding	RECQL4	chromosome:C_jacchus3.2.1:16:1:96796970:1	50122652	50129687	D	RecQ protein-like 4 [Source:HGNC Symbol;Acc:HGNC:9949]
ENSCJAG00000019848	KNOWN	protein_coding	TBCA	chromosome:C_jacchus3.2.1:2:1:204313951:1	130562226	130642197	D	Tubulin-specific chaperone A {ECO:0000313|EMBL:JAB03398.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044878}  [Source:UniProtKB/TrEMBL;Acc:F7HGE1]
ENSCJAG00000006368	NOVEL	protein_coding	ENSCJAG00000006368	chromosome:C_jacchus3.2.1:3:1:190850796:1	26504757	26506342	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011734}  [Source:UniProtKB/TrEMBL;Acc:F7GCS8]
ENSCJAG00000005333	KNOWN_BY_PROJECTION	protein_coding	RSPH1	chromosome:C_jacchus3.2.1:21:1:50472720:1	46401691	46427518	R	radial spoke head 1 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:HGNC:12371]
ENSCJAG00000021396	KNOWN_BY_PROJECTION	protein_coding	C8orf82	chromosome:C_jacchus3.2.1:16:1:96796970:1	50110489	50113278	D	chromosome 8 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:33826]
ENSCJAG00000021390	KNOWN	protein_coding	ZNF251	chromosome:C_jacchus3.2.1:16:1:96796970:1	49875024	49915371	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039806}; Zinc finger protein 251 {ECO:0000313|EMBL:JAB13241.1}  [Source:UniProtKB/TrEMBL;Acc:F7GNP6]
ENSCJAG00000021391	NOVEL	protein_coding	ENSCJAG00000021391	chromosome:C_jacchus3.2.1:16:1:96796970:1	49859153	49925871	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039807}  [Source:UniProtKB/TrEMBL;Acc:F7GNP3]
ENSCJAG00000021388	NOVEL	protein_coding	ENSCJAG00000021388	chromosome:C_jacchus3.2.1:16:1:96796970:1	49819267	49821733	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039801}  [Source:UniProtKB/TrEMBL;Acc:F7GNR3]
ENSCJAG00000021384	KNOWN	protein_coding	ZNF7	chromosome:C_jacchus3.2.1:16:1:96796970:1	49775791	49793056	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039795}; Zinc finger protein 7 {ECO:0000313|EMBL:JAB24045.1}  [Source:UniProtKB/TrEMBL;Acc:F7H9K2]
ENSCJAG00000007364	KNOWN_BY_PROJECTION	protein_coding	TFF2	chromosome:C_jacchus3.2.1:21:1:50472720:1	46254123	46262555	R	trefoil factor 2 [Source:HGNC Symbol;Acc:HGNC:11756]
ENSCJAG00000007371	KNOWN_BY_PROJECTION	protein_coding	TFF1	chromosome:C_jacchus3.2.1:21:1:50472720:1	46274788	46278705	R	trefoil factor 1 [Source:HGNC Symbol;Acc:HGNC:11755]
ENSCJAG00000021381	KNOWN	protein_coding	ZNF250	chromosome:C_jacchus3.2.1:16:1:96796970:1	49729378	49748036	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039789}; Zinc finger protein 250 isoform a {ECO:0000313|EMBL:JAB45850.1}  [Source:UniProtKB/TrEMBL;Acc:F7H9L2]
ENSCJAG00000009198	KNOWN	protein_coding	TMEM192	chromosome:C_jacchus3.2.1:3:1:190850796:1	26332931	26375771	D	Transmembrane protein 192 {ECO:0000313|EMBL:JAB03718.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016859}  [Source:UniProtKB/TrEMBL;Acc:F6XBG4]
ENSCJAG00000021378	KNOWN_BY_PROJECTION	protein_coding	C8orf33	chromosome:C_jacchus3.2.1:16:1:96796970:1	49583381	49635775	R	chromosome 8 open reading frame 33 [Source:HGNC Symbol;Acc:HGNC:26104]
ENSCJAG00000007292	KNOWN_BY_PROJECTION	protein_coding	UMODL1	chromosome:C_jacchus3.2.1:21:1:50472720:1	46006095	46083917	D	uromodulin-like 1 [Source:HGNC Symbol;Acc:HGNC:12560]
ENSCJAG00000020862	KNOWN_BY_PROJECTION	protein_coding	DHH	chromosome:C_jacchus3.2.1:9:1:124281992:1	37865845	37871218	R	desert hedgehog [Source:HGNC Symbol;Acc:HGNC:2865]
ENSCJAG00000031235	KNOWN_BY_PROJECTION	protein_coding	LAPTM4B	chromosome:C_jacchus3.2.1:16:1:96796970:1	49497914	49563043	D	lysosomal protein transmembrane 4 beta [Source:HGNC Symbol;Acc:HGNC:13646]
ENSCJAG00000013843	KNOWN_BY_PROJECTION	protein_coding	ZBTB21	chromosome:C_jacchus3.2.1:21:1:50472720:1	45921396	45940299	R	zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]
ENSCJAG00000020856	KNOWN_BY_PROJECTION	protein_coding	RHEBL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	37843313	37849360	R	Ras homolog enriched in brain like 1 [Source:HGNC Symbol;Acc:HGNC:21166]
ENSCJAG00000021330	KNOWN	protein_coding	SNRNP48	chromosome:C_jacchus3.2.1:4:1:171630274:1	21012816	21033221	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039705}  [Source:UniProtKB/TrEMBL;Acc:F7DTQ5]
ENSCJAG00000013827	NOVEL	protein_coding	ENSCJAG00000013827	chromosome:C_jacchus3.2.1:21:1:50472720:1	45816204	45872892	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025425}  [Source:UniProtKB/TrEMBL;Acc:F6W1E7]
ENSCJAG00000005059	KNOWN_BY_PROJECTION	protein_coding	MTDH	chromosome:C_jacchus3.2.1:16:1:96796970:1	49391657	49458487	D	metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
ENSCJAG00000021329	NOVEL	protein_coding	ENSCJAG00000021329	chromosome:C_jacchus3.2.1:4:1:171630274:1	20935496	20937842	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039700}  [Source:UniProtKB/TrEMBL;Acc:F7E7W5]
ENSCJAG00000013815	KNOWN_BY_PROJECTION	protein_coding	PRDM15	chromosome:C_jacchus3.2.1:21:1:50472720:1	45733374	45786618	R	PR domain containing 15 [Source:HGNC Symbol;Acc:HGNC:13999]
ENSCJAG00000009218	KNOWN	protein_coding	KLHL2	chromosome:C_jacchus3.2.1:3:1:190850796:1	26109217	26236000	R	Kelch-like protein 2 isoform 1 {ECO:0000313|EMBL:JAB09434.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017027}  [Source:UniProtKB/TrEMBL;Acc:F7HYN9]
ENSCJAG00000011236	KNOWN_BY_PROJECTION	protein_coding	TMPRSS2	chromosome:C_jacchus3.2.1:21:1:50472720:1	45427063	45471209	R	transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:HGNC:11876]
ENSCJAG00000020563	KNOWN_BY_PROJECTION	protein_coding	PTDSS1	chromosome:C_jacchus3.2.1:16:1:96796970:1	48077428	48151741	D	phosphatidylserine synthase 1 [Source:HGNC Symbol;Acc:HGNC:9587]
ENSCJAG00000035202	NOVEL	protein_coding	ENSCJAG00000035202	chromosome:C_jacchus3.2.1:16:1:96796970:1	47976754	47977545	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048494}  [Source:UniProtKB/TrEMBL;Acc:F7H8B6]
ENSCJAG00000020558	KNOWN_BY_PROJECTION	protein_coding	GDF6	chromosome:C_jacchus3.2.1:16:1:96796970:1	47940777	47957258	R	growth differentiation factor 6 [Source:HGNC Symbol;Acc:HGNC:4221]
ENSCJAG00000020557	NOVEL	protein_coding	ENSCJAG00000020557	chromosome:C_jacchus3.2.1:16:1:96796970:1	47871420	47872077	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038193}  [Source:UniProtKB/TrEMBL;Acc:F7I022]
ENSCJAG00000020552	NOVEL	pseudogene	ENSCJAG00000020552	chromosome:C_jacchus3.2.1:16:1:96796970:1	46961579	46963818	R	<no descrition>
ENSCJAG00000023272	KNOWN	protein_coding	PLEKHF2	chromosome:C_jacchus3.2.1:16:1:96796970:1	46936227	46959349	D	Pleckstrin homology domain-containing family F member 2 {ECO:0000313|EMBL:JAB05927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041784}  [Source:UniProtKB/TrEMBL;Acc:F7FEC3]
ENSCJAG00000019794	KNOWN	protein_coding	SCAMP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	129812114	129932014	R	Secretory carrier-associated membrane protein 1 {ECO:0000313|EMBL:JAB06900.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036815}  [Source:UniProtKB/TrEMBL;Acc:F6TX09]
ENSCJAG00000011375	NOVEL	pseudogene	ENSCJAG00000011375	chromosome:C_jacchus3.2.1:21:1:50472720:1	44987156	44988179	D	<no descrition>
ENSCJAG00000033400	NOVEL	protein_coding	ENSCJAG00000033400	chromosome:C_jacchus3.2.1:21:1:50472720:1	44778621	44780719	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046518}  [Source:UniProtKB/TrEMBL;Acc:F7I8J4]
ENSCJAG00000005958	KNOWN_BY_PROJECTION	protein_coding	NDUFAF6	chromosome:C_jacchus3.2.1:16:1:96796970:1	46844622	46893941	D	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Source:HGNC Symbol;Acc:HGNC:28625]
ENSCJAG00000019790	NOVEL	pseudogene	ENSCJAG00000019790	chromosome:C_jacchus3.2.1:2:1:204313951:1	129588936	129589720	D	<no descrition>
ENSCJAG00000021144	NOVEL	pseudogene	ENSCJAG00000021144	chromosome:C_jacchus3.2.1:16:1:96796970:1	46798374	46798927	R	<no descrition>
ENSCJAG00000000009	KNOWN	protein_coding	TP53INP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	46726120	46746889	R	Tumor protein p53-inducible nuclear protein 1 isoform a {ECO:0000313|EMBL:JAB05138.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000013}  [Source:UniProtKB/TrEMBL;Acc:F7HJR9]
ENSCJAG00000005540	KNOWN	protein_coding	DSCAM	chromosome:C_jacchus3.2.1:21:1:50472720:1	43950776	44763755	R	Down syndrome cell adhesion molecule isoform CHD2-42 {ECO:0000313|EMBL:JAB28747.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010305}  [Source:UniProtKB/TrEMBL;Acc:F7AAS3]
ENSCJAG00000020006	KNOWN	protein_coding	SMG1	chromosome:C_jacchus3.2.1:12:1:121768101:1	18397793	18510592	R	Serine/threonine-protein kinase SMG1 {ECO:0000313|EMBL:JAB30375.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037310}  [Source:UniProtKB/TrEMBL;Acc:F7B0T5]
ENSCJAG00000005649	KNOWN	protein_coding	PCP4	chromosome:C_jacchus3.2.1:21:1:50472720:1	43784674	43864352	D	Purkinje cell protein 4 {ECO:0000313|EMBL:JAB02789.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010334}  [Source:UniProtKB/TrEMBL;Acc:F7A9Q8]
ENSCJAG00000005669	NOVEL	protein_coding	ENSCJAG00000005669	chromosome:C_jacchus3.2.1:21:1:50472720:1	43539796	43557830	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010406}  [Source:UniProtKB/TrEMBL;Acc:F7HZ53]
ENSCJAG00000005677	NOVEL	protein_coding	ENSCJAG00000005677	chromosome:C_jacchus3.2.1:21:1:50472720:1	43515823	43516667	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010422}  [Source:UniProtKB/TrEMBL;Acc:F7HWW0]
ENSCJAG00000005708	NOVEL	protein_coding	ENSCJAG00000005708	chromosome:C_jacchus3.2.1:21:1:50472720:1	43352815	43353651	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010471}  [Source:UniProtKB/TrEMBL;Acc:F7HNB2]
ENSCJAG00000019785	NOVEL	protein_coding	ENSCJAG00000019785	chromosome:C_jacchus3.2.1:2:1:204313951:1	129272408	129276438	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052382}  [Source:UniProtKB/TrEMBL;Acc:F7ILD3]
ENSCJAG00000005687	NOVEL	protein_coding	SH3BGR	chromosome:C_jacchus3.2.1:21:1:50472720:1	43399213	43461715	D	SH3-binding domain and glutamic acid-rich protein isoform a (Predicted) {ECO:0000313|EMBL:ABY79114.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010429}  [Source:UniProtKB/TrEMBL;Acc:B0KW91]
ENSCJAG00000005714	KNOWN	protein_coding	WRB	chromosome:C_jacchus3.2.1:21:1:50472720:1	43323715	43356323	D	Tryptophan rich basic protein (Predicted) {ECO:0000313|EMBL:ABY79112.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047252}  [Source:UniProtKB/TrEMBL;Acc:B0KW89]
ENSCJAG00000021320	KNOWN_BY_PROJECTION	protein_coding	SLC35B3	chromosome:C_jacchus3.2.1:4:1:171630274:1	20050711	20073672	D	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 [Source:HGNC Symbol;Acc:HGNC:21601]
ENSCJAG00000000015	KNOWN	protein_coding	INTS8	chromosome:C_jacchus3.2.1:16:1:96796970:1	46617138	46674941	D	Integrator complex subunit 8 {ECO:0000313|EMBL:JAB17174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000044}  [Source:UniProtKB/TrEMBL;Acc:F7H991]
ENSCJAG00000005727	KNOWN	protein_coding	ENSCJAG00000005727	chromosome:C_jacchus3.2.1:21:1:50472720:1	43292907	43300654	R	Non-histone chromosomal protein HMG-14 {ECO:0000313|EMBL:JAB05224.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010511}  [Source:UniProtKB/TrEMBL;Acc:F7II06]
ENSCJAG00000032354	NOVEL	protein_coding	ENSCJAG00000032354	chromosome:C_jacchus3.2.1:21:1:50472720:1	43157610	43158142	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045650}  [Source:UniProtKB/TrEMBL;Acc:F6Q2T1]
ENSCJAG00000000041	NOVEL	protein_coding	ENSCJAG00000000041	chromosome:C_jacchus3.2.1:16:1:96796970:1	46568199	46568991	D	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7GYT3]
ENSCJAG00000032468	NOVEL	protein_coding	ENSCJAG00000032468	chromosome:C_jacchus3.2.1:4:1:171630274:1	19215130	19216510	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041996}  [Source:UniProtKB/TrEMBL;Acc:F7FSL5]
ENSCJAG00000020845	KNOWN_BY_PROJECTION	protein_coding	KMT2D	chromosome:C_jacchus3.2.1:9:1:124281992:1	37796747	37833259	R	lysine (K)-specific methyltransferase 2D [Source:HGNC Symbol;Acc:HGNC:7133]
ENSCJAG00000000063	NOVEL	pseudogene	ENSCJAG00000000063	chromosome:C_jacchus3.2.1:16:1:96796970:1	46488257	46489592	D	<no descrition>
ENSCJAG00000020071	KNOWN	protein_coding	ENSCJAG00000020071	chromosome:C_jacchus3.2.1:12:1:121768101:1	18368858	18377755	R	40S ribosomal protein S15a {ECO:0000313|EMBL:JAB45809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041240}  [Source:UniProtKB/TrEMBL;Acc:F7HAU7]
ENSCJAG00000020068	KNOWN	protein_coding	ARL6IP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	18380623	18390875	R	ADP-ribosylation factor-like protein 6-interacting protein 1 {ECO:0000313|EMBL:JAB01613.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037312}  [Source:UniProtKB/TrEMBL;Acc:F7B0N3]
ENSCJAG00000015942	KNOWN_BY_PROJECTION	protein_coding	XYLT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	17448159	17830540	D	xylosyltransferase I [Source:HGNC Symbol;Acc:HGNC:15516]
ENSCJAG00000021312	KNOWN	protein_coding	TFAP2A	chromosome:C_jacchus3.2.1:4:1:171630274:1	18200831	18242401	D	Transcription factor AP-2-alpha isoform b {ECO:0000313|EMBL:JAB07172.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047977}  [Source:UniProtKB/TrEMBL;Acc:F7DL54]
ENSCJAG00000032617	NOVEL	pseudogene	ENSCJAG00000032617	chromosome:C_jacchus3.2.1:4:1:171630274:1	18194659	18195011	D	<no descrition>
ENSCJAG00000019752	KNOWN_BY_PROJECTION	protein_coding	BHMT	chromosome:C_jacchus3.2.1:2:1:204313951:1	129117325	129132509	R	betaine--homocysteine S-methyltransferase [Source:HGNC Symbol;Acc:HGNC:1047]
ENSCJAG00000003688	NOVEL	protein_coding	ENSCJAG00000003688	chromosome:C_jacchus3.2.1:4:1:171630274:1	17997785	17998361	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006687}  [Source:UniProtKB/TrEMBL;Acc:F7GQC4]
ENSCJAG00000009311	KNOWN_BY_PROJECTION	protein_coding	CPE	chromosome:C_jacchus3.2.1:3:1:190850796:1	25903170	26043272	R	carboxypeptidase E [Source:HGNC Symbol;Acc:HGNC:2303]
ENSCJAG00000003689	NOVEL	protein_coding	ENSCJAG00000003689	chromosome:C_jacchus3.2.1:4:1:171630274:1	17965955	17966983	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006692}  [Source:UniProtKB/TrEMBL;Acc:F7GIV9]
ENSCJAG00000019743	KNOWN_BY_PROJECTION	protein_coding	JMY	chromosome:C_jacchus3.2.1:2:1:204313951:1	128910048	129012968	R	junction mediating and regulatory protein, p53 cofactor [Source:HGNC Symbol;Acc:HGNC:28916]
ENSCJAG00000003678	NOVEL	protein_coding	ENSCJAG00000003678	chromosome:C_jacchus3.2.1:4:1:171630274:1	17908791	18131251	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045613}  [Source:UniProtKB/TrEMBL;Acc:F6QZK0]
ENSCJAG00000020827	KNOWN	protein_coding	PRKAG1	chromosome:C_jacchus3.2.1:9:1:124281992:1	37774436	37793608	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038771}  [Source:UniProtKB/TrEMBL;Acc:F7IDS6]
ENSCJAG00000001100	NOVEL	pseudogene	ENSCJAG00000001100	chromosome:C_jacchus3.2.1:4:1:171630274:1	17867059	17867674	D	<no descrition>
ENSCJAG00000020825	KNOWN	protein_coding	DDN	chromosome:C_jacchus3.2.1:9:1:124281992:1	37766630	37770801	R	Dendrin {ECO:0000313|EMBL:JAB33428.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038744}  [Source:UniProtKB/TrEMBL;Acc:F7IG77]
ENSCJAG00000035576	KNOWN	protein_coding	FSBP	chromosome:C_jacchus3.2.1:16:1:96796970:1	46223502	46260667	R	Fibrinogen silencer-binding protein {ECO:0000313|EMBL:JAB23259.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000152}  [Source:UniProtKB/TrEMBL;Acc:F7EIZ6]
ENSCJAG00000009337	NOVEL	pseudogene	ENSCJAG00000009337	chromosome:C_jacchus3.2.1:3:1:190850796:1	25835710	25836074	D	<no descrition>
ENSCJAG00000019722	KNOWN	protein_coding	HOMER1	chromosome:C_jacchus3.2.1:2:1:204313951:1	128680112	128832568	D	Homer protein homolog 1 {ECO:0000313|EMBL:JAB20823.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036684}  [Source:UniProtKB/TrEMBL;Acc:F6T045]
ENSCJAG00000009340	NOVEL	protein_coding	ENSCJAG00000009340	chromosome:C_jacchus3.2.1:3:1:190850796:1	25679263	25680985	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017111}  [Source:UniProtKB/TrEMBL;Acc:F7IJQ8]
ENSCJAG00000000080	KNOWN_BY_PROJECTION	protein_coding	RAD54B	chromosome:C_jacchus3.2.1:16:1:96796970:1	46160370	46266636	R	RAD54 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17228]
ENSCJAG00000020813	KNOWN_BY_PROJECTION	protein_coding	WNT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	37749244	37753804	D	wingless-type MMTV integration site family, member 1 [Source:HGNC Symbol;Acc:HGNC:12774]
ENSCJAG00000008119	NOVEL	protein_coding	ENSCJAG00000008119	chromosome:C_jacchus3.2.1:21:1:50472720:1	42305809	42597718	R	<no descrition>
ENSCJAG00000000088	KNOWN	protein_coding	GEM	chromosome:C_jacchus3.2.1:16:1:96796970:1	46035617	46048484	R	GTP-binding protein GEM {ECO:0000313|EMBL:JAB10816.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000154}  [Source:UniProtKB/TrEMBL;Acc:F7EIY8]
ENSCJAG00000009353	NOVEL	protein_coding	ENSCJAG00000009353	chromosome:C_jacchus3.2.1:3:1:190850796:1	25239505	25340637	R	<no descrition>
ENSCJAG00000004664	NOVEL	protein_coding	ENSCJAG00000004664	chromosome:C_jacchus3.2.1:3:1:190850796:1	24037956	24039150	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008443}  [Source:UniProtKB/TrEMBL;Acc:F7ID28]
ENSCJAG00000005025	KNOWN_BY_PROJECTION	protein_coding	SYCP2L	chromosome:C_jacchus3.2.1:4:1:171630274:1	17638544	17832619	R	synaptonemal complex protein 2-like [Source:HGNC Symbol;Acc:HGNC:21537]
ENSCJAG00000000090	KNOWN_BY_PROJECTION	protein_coding	CDH17	chromosome:C_jacchus3.2.1:16:1:96796970:1	45909935	45999500	R	cadherin 17, LI cadherin (liver-intestine) [Source:HGNC Symbol;Acc:HGNC:1756]
ENSCJAG00000015952	NOVEL	protein_coding	ENSCJAG00000015952	chromosome:C_jacchus3.2.1:12:1:121768101:1	16416142	16487140	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047620}  [Source:UniProtKB/TrEMBL;Acc:F7H2P5]
ENSCJAG00000008180	KNOWN_BY_PROJECTION	protein_coding	KCNJ15	chromosome:C_jacchus3.2.1:21:1:50472720:1	42177294	42222699	D	potassium channel, inwardly rectifying subfamily J, member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
ENSCJAG00000002599	KNOWN	protein_coding	KCNJ6	chromosome:C_jacchus3.2.1:21:1:50472720:1	41577804	41872718	R	G protein-activated inward rectifier potassium channel 2 {ECO:0000313|EMBL:JAB12944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004717}  [Source:UniProtKB/TrEMBL;Acc:F7BNG3]
ENSCJAG00000002609	KNOWN	protein_coding	DYRK1A	chromosome:C_jacchus3.2.1:21:1:50472720:1	41395489	41482368	D	Dual specificity tyrosine-phosphorylation-regulated kinase 1A isoform 2 {ECO:0000313|EMBL:JAB09893.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004750}  [Source:UniProtKB/TrEMBL;Acc:F7BM65]
ENSCJAG00000019713	KNOWN	protein_coding	PAPD4	chromosome:C_jacchus3.2.1:2:1:204313951:1	128523803	128591022	R	Poly(A) RNA polymerase GLD2 {ECO:0000313|EMBL:JAB11611.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048527}  [Source:UniProtKB/TrEMBL;Acc:F7G0R1]
ENSCJAG00000020798	NOVEL	protein_coding	ENSCJAG00000020798	chromosome:C_jacchus3.2.1:9:1:124281992:1	37705684	37729499	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038688}  [Source:UniProtKB/TrEMBL;Acc:F7ISZ4]
ENSCJAG00000020795	KNOWN	protein_coding	FKBP11	chromosome:C_jacchus3.2.1:9:1:124281992:1	37689037	37693531	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}  [Source:UniProtKB/TrEMBL;Acc:F7ISZ6]
ENSCJAG00000000105	KNOWN_BY_PROJECTION	protein_coding	TMEM67	chromosome:C_jacchus3.2.1:16:1:96796970:1	45533652	45597986	D	transmembrane protein 67 [Source:HGNC Symbol;Acc:HGNC:28396]
ENSCJAG00000020794	NOVEL	pseudogene	ENSCJAG00000020794	chromosome:C_jacchus3.2.1:9:1:124281992:1	37679136	37680238	D	<no descrition>
ENSCJAG00000005080	KNOWN	protein_coding	ADTRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	16879605	16945150	D	Androgen-dependent TFPI-regulating protein isoform 2 {ECO:0000313|EMBL:JAB36915.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009301}  [Source:UniProtKB/TrEMBL;Acc:F7DN37]
ENSCJAG00000000123	NOVEL	pseudogene	ENSCJAG00000000123	chromosome:C_jacchus3.2.1:16:1:96796970:1	45516691	45517347	D	<no descrition>
ENSCJAG00000000124	KNOWN_BY_PROJECTION	protein_coding	RBM12B	chromosome:C_jacchus3.2.1:16:1:96796970:1	45508537	45517569	R	RNA binding motif protein 12B [Source:HGNC Symbol;Acc:HGNC:32310]
ENSCJAG00000019709	KNOWN_BY_PROJECTION	protein_coding	CMYA5	chromosome:C_jacchus3.2.1:2:1:204313951:1	128421679	128519941	R	cardiomyopathy associated 5 [Source:HGNC Symbol;Acc:HGNC:14305]
ENSCJAG00000020786	KNOWN	protein_coding	RND1	chromosome:C_jacchus3.2.1:9:1:124281992:1	37613314	37622204	R	Rho-related GTP-binding protein Rho6 {ECO:0000313|EMBL:JAB09304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038673}  [Source:UniProtKB/TrEMBL;Acc:F7IT13]
ENSCJAG00000018953	KNOWN_BY_PROJECTION	protein_coding	PABPC3	chromosome:C_jacchus3.2.1:16:1:96796970:1	45392259	45584908	D	poly(A) binding protein, cytoplasmic 3 [Source:HGNC Symbol;Acc:HGNC:8556]
ENSCJAG00000000134	NOVEL	protein_coding	ENSCJAG00000000134	chromosome:C_jacchus3.2.1:16:1:96796970:1	44890300	44891585	D	Ribosomal protein L15 {ECO:0000256|RuleBase:RU000663}  [Source:UniProtKB/TrEMBL;Acc:F7HUL1]
ENSCJAG00000000138	KNOWN	protein_coding	TRIQK	chromosome:C_jacchus3.2.1:16:1:96796970:1	44657220	44732078	R	Triple QxxK/R motif-containing protein {ECO:0000313|EMBL:JAB01726.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000235}  [Source:UniProtKB/TrEMBL;Acc:F7GTE1]
ENSCJAG00000000156	NOVEL	pseudogene	ENSCJAG00000000156	chromosome:C_jacchus3.2.1:16:1:96796970:1	43814465	43814993	R	<no descrition>
ENSCJAG00000005130	KNOWN	protein_coding	EDN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	16392838	16400325	R	Endothelin-1 isoform 1 preproprotein {ECO:0000313|EMBL:JAB24662.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009361}  [Source:UniProtKB/TrEMBL;Acc:F7H803]
ENSCJAG00000002640	KNOWN_BY_PROJECTION	protein_coding	TTC3	chromosome:C_jacchus3.2.1:21:1:50472720:1	41076938	41187296	D	tetratricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:12393]
ENSCJAG00000005137	KNOWN	protein_coding	PHACTR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	15422624	15564619	R	Phosphatase and actin regulator {ECO:0000256|RuleBase:RU301113}  [Source:UniProtKB/TrEMBL;Acc:F7H2I6]
ENSCJAG00000019700	KNOWN	protein_coding	MTX3	chromosome:C_jacchus3.2.1:2:1:204313951:1	128229032	128236781	D	Metaxin-3 isoform 2 {ECO:0000313|EMBL:JAB03283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036595}  [Source:UniProtKB/TrEMBL;Acc:F7EW54]
ENSCJAG00000000144	KNOWN	protein_coding	RUNX1T1	chromosome:C_jacchus3.2.1:16:1:96796970:1	43728961	43867851	R	Protein CBFA2T1 isoform B {ECO:0000313|EMBL:JAB17645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000258}  [Source:UniProtKB/TrEMBL;Acc:F7GN62]
ENSCJAG00000004671	KNOWN	protein_coding	SPOCK3	chromosome:C_jacchus3.2.1:3:1:190850796:1	22746461	23437814	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008513}  [Source:UniProtKB/TrEMBL;Acc:F7HYW7]
ENSCJAG00000005152	KNOWN	protein_coding	TBC1D7	chromosome:C_jacchus3.2.1:4:1:171630274:1	15365517	15388401	D	TBC1 domain family member 7 isoform a {ECO:0000313|EMBL:JAB14866.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042937}  [Source:UniProtKB/TrEMBL;Acc:F6W6P2]
ENSCJAG00000019809	KNOWN	protein_coding	GFOD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	15179793	15221527	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036823}  [Source:UniProtKB/TrEMBL;Acc:F6TW50]
ENSCJAG00000000159	KNOWN_BY_PROJECTION	protein_coding	SLC26A7	chromosome:C_jacchus3.2.1:16:1:96796970:1	42995607	43196980	D	solute carrier family 26 (anion exchanger), member 7 [Source:HGNC Symbol;Acc:HGNC:14467]
ENSCJAG00000002683	KNOWN_BY_PROJECTION	protein_coding	PIGP	chromosome:C_jacchus3.2.1:21:1:50472720:1	41057235	41064826	R	phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:HGNC:3046]
ENSCJAG00000037181	KNOWN_BY_PROJECTION	protein_coding	LRRC69	chromosome:C_jacchus3.2.1:16:1:96796970:1	42896173	43005261	D	leucine rich repeat containing 69 [Source:HGNC Symbol;Acc:HGNC:34303]
ENSCJAG00000000182	KNOWN	protein_coding	OTUD6B	chromosome:C_jacchus3.2.1:16:1:96796970:1	42856236	42873256	D	OTU domain-containing protein 6B {ECO:0000313|EMBL:JAB02721.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049345}  [Source:UniProtKB/TrEMBL;Acc:F6YYT7]
ENSCJAG00000002769	KNOWN	protein_coding	CLDN14	chromosome:C_jacchus3.2.1:21:1:50472720:1	40464329	40620337	R	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:F7C3D9]
ENSCJAG00000000187	KNOWN_BY_PROJECTION	protein_coding	NECAB1	chromosome:C_jacchus3.2.1:16:1:96796970:1	42580610	42745957	D	N-terminal EF-hand calcium binding protein 1 [Source:HGNC Symbol;Acc:HGNC:20983]
ENSCJAG00000015997	KNOWN_BY_PROJECTION	protein_coding	CIITA	chromosome:C_jacchus3.2.1:12:1:121768101:1	16216062	16266831	R	class II, major histocompatibility complex, transactivator [Source:HGNC Symbol;Acc:HGNC:7067]
ENSCJAG00000000194	KNOWN	protein_coding	TMEM64	chromosome:C_jacchus3.2.1:16:1:96796970:1	42416489	42438843	R	Transmembrane protein 64 isoform 1 {ECO:0000313|EMBL:JAB11811.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000318}  [Source:UniProtKB/TrEMBL;Acc:F7D8P0]
ENSCJAG00000019641	KNOWN_BY_PROJECTION	protein_coding	THBS4	chromosome:C_jacchus3.2.1:2:1:204313951:1	128138105	128185430	R	thrombospondin 4 [Source:HGNC Symbol;Acc:HGNC:11788]
ENSCJAG00000000196	KNOWN	protein_coding	CALB1	chromosome:C_jacchus3.2.1:16:1:96796970:1	41838609	41863565	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000322}  [Source:UniProtKB/TrEMBL;Acc:F7D8L7]
ENSCJAG00000002725	KNOWN_BY_PROJECTION	protein_coding	DOPEY2	chromosome:C_jacchus3.2.1:21:1:50472720:1	40196064	40309628	D	dopey family member 2 [Source:HGNC Symbol;Acc:HGNC:1291]
ENSCJAG00000020775	KNOWN	protein_coding	DDX23	chromosome:C_jacchus3.2.1:9:1:124281992:1	37578540	37608289	R	Putative ATP-dependent RNA helicase DDX23 {ECO:0000313|EMBL:JAB04161.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038667}  [Source:UniProtKB/TrEMBL;Acc:F7IT31]
ENSCJAG00000019797	KNOWN_BY_PROJECTION	protein_coding	RANBP9	chromosome:C_jacchus3.2.1:4:1:171630274:1	14981153	15066411	D	RAN binding protein 9 [Source:HGNC Symbol;Acc:HGNC:13727]
ENSCJAG00000002799	NOVEL	pseudogene	ENSCJAG00000002799	chromosome:C_jacchus3.2.1:21:1:50472720:1	40165053	40165632	D	<no descrition>
ENSCJAG00000000205	NOVEL	protein_coding	ENSCJAG00000000205	chromosome:C_jacchus3.2.1:16:1:96796970:1	41711481	41769778	R	Nibrin {ECO:0000256|PIRNR:PIRNR011869}  [Source:UniProtKB/TrEMBL;Acc:F7HJ13]
ENSCJAG00000038083	KNOWN	protein_coding	CBR1	chromosome:C_jacchus3.2.1:21:1:50472720:1	40103319	40106491	D	Carbonyl reductase [NADPH] 1 {ECO:0000313|EMBL:JAB16618.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005087}  [Source:UniProtKB/TrEMBL;Acc:F7HSL0]
ENSCJAG00000016052	KNOWN_BY_PROJECTION	protein_coding	PRM2	chromosome:C_jacchus3.2.1:12:1:121768101:1	15856569	15984738	D	protamine 2 [Source:HGNC Symbol;Acc:HGNC:9448]
ENSCJAG00000019619	KNOWN	protein_coding	SERINC5	chromosome:C_jacchus3.2.1:2:1:204313951:1	127948292	128105851	D	Serine incorporator 5 isoform 1 {ECO:0000313|EMBL:JAB09983.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036451}  [Source:UniProtKB/TrEMBL;Acc:F7D7U7]
ENSCJAG00000022987	NOVEL	protein_coding	ENSCJAG00000022987	chromosome:C_jacchus3.2.1:12:1:121768101:1	15851601	15852121	D	Sperm protamine P1 {ECO:0000256|RuleBase:RU000650}  [Source:UniProtKB/TrEMBL;Acc:F7FTZ6]
ENSCJAG00000000220	KNOWN	protein_coding	OSGIN2	chromosome:C_jacchus3.2.1:16:1:96796970:1	41681074	41704807	D	Oxidative stress-induced growth inhibitor 2 isoform 1 {ECO:0000313|EMBL:JAB10028.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000368}  [Source:UniProtKB/TrEMBL;Acc:F7HDX6]
ENSCJAG00000002805	KNOWN_BY_PROJECTION	protein_coding	SETD4	chromosome:C_jacchus3.2.1:21:1:50472720:1	40071358	40092519	R	SET domain containing 4 [Source:HGNC Symbol;Acc:HGNC:1258]
ENSCJAG00000016057	KNOWN	protein_coding	LITAF	chromosome:C_jacchus3.2.1:12:1:121768101:1	15570757	15610341	D	Lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform 1 {ECO:0000313|EMBL:JAB06431.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029541}  [Source:UniProtKB/TrEMBL;Acc:F7IC97]
ENSCJAG00000002816	KNOWN	protein_coding	RUNX1	chromosome:C_jacchus3.2.1:21:1:50472720:1	38801152	39059600	R	Runt-related transcription factor 1 isoform AML1c {ECO:0000313|EMBL:JAB38040.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005127}  [Source:UniProtKB/TrEMBL;Acc:F7IM04]
ENSCJAG00000016050	KNOWN	protein_coding	CCDC90A	chromosome:C_jacchus3.2.1:4:1:171630274:1	14863783	14887352	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029555}  [Source:UniProtKB/TrEMBL;Acc:F7I9Z7]
ENSCJAG00000019615	NOVEL	pseudogene	ENSCJAG00000019615	chromosome:C_jacchus3.2.1:2:1:204313951:1	127908544	127909012	R	<no descrition>
ENSCJAG00000000226	KNOWN	protein_coding	RIPK2	chromosome:C_jacchus3.2.1:16:1:96796970:1	41547652	41582343	D	Receptor-interacting serine/threonine-protein kinase 2 {ECO:0000313|EMBL:JAB05027.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000369}  [Source:UniProtKB/TrEMBL;Acc:F7HDX4]
ENSCJAG00000002922	KNOWN	protein_coding	RNF182	chromosome:C_jacchus3.2.1:4:1:171630274:1	14697664	14765327	R	E3 ubiquitin-protein ligase RNF182 {ECO:0000313|EMBL:JAB30581.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005288}  [Source:UniProtKB/TrEMBL;Acc:F7HSB7]
ENSCJAG00000000238	NOVEL	protein_coding	ENSCJAG00000000238	chromosome:C_jacchus3.2.1:16:1:96796970:1	41246372	41248161	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000385}  [Source:UniProtKB/TrEMBL;Acc:F7H8L2]
ENSCJAG00000002829	KNOWN_BY_PROJECTION	protein_coding	CLIC6	chromosome:C_jacchus3.2.1:21:1:50472720:1	38683418	38734666	D	chloride intracellular channel 6 [Source:HGNC Symbol;Acc:HGNC:2065]
ENSCJAG00000000239	KNOWN	protein_coding	MMP16	chromosome:C_jacchus3.2.1:16:1:96796970:1	39820311	40094846	R	Matrix metalloproteinase-16 {ECO:0000313|EMBL:JAB44844.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000408}  [Source:UniProtKB/TrEMBL;Acc:F7G1M2]
ENSCJAG00000022486	KNOWN	protein_coding	KCNE1	chromosome:C_jacchus3.2.1:21:1:50472720:1	38476993	38531066	R	Potassium voltage-gated channel subfamily E member 1 {ECO:0000313|EMBL:JAB04152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047913}  [Source:UniProtKB/TrEMBL;Acc:F7F7E5]
ENSCJAG00000004282	NOVEL	pseudogene	ENSCJAG00000004282	chromosome:C_jacchus3.2.1:16:1:96796970:1	38465215	38465789	R	<no descrition>
ENSCJAG00000002857	KNOWN	protein_coding	SMIM11	chromosome:C_jacchus3.2.1:21:1:50472720:1	38418255	38428274	D	Protein FAM165B {ECO:0000313|EMBL:JAB02579.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005195}  [Source:UniProtKB/TrEMBL;Acc:F7IAB3]
ENSCJAG00000019577	NOVEL	protein_coding	ENSCJAG00000019577	chromosome:C_jacchus3.2.1:2:1:204313951:1	127734404	127735421	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036358}  [Source:UniProtKB/TrEMBL;Acc:F7GSY3]
ENSCJAG00000014621	KNOWN	protein_coding	TXNDC11	chromosome:C_jacchus3.2.1:12:1:121768101:1	15428893	15494058	D	Thioredoxin domain-containing protein 11 {ECO:0000313|EMBL:JAB33538.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026951}  [Source:UniProtKB/TrEMBL;Acc:F7IQJ5]
ENSCJAG00000002873	KNOWN	protein_coding	ATP5O	chromosome:C_jacchus3.2.1:21:1:50472720:1	37903022	37917196	R	ATP synthase subunit O, mitochondrial  [Source:UniProtKB/Swiss-Prot;Acc:B0VXH3]
ENSCJAG00000004832	NOVEL	protein_coding	ENSCJAG00000004832	chromosome:C_jacchus3.2.1:3:1:190850796:1	20978092	20979977	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008814}  [Source:UniProtKB/TrEMBL;Acc:F7IHK3]
ENSCJAG00000008403	KNOWN	protein_coding	ZC3H7A	chromosome:C_jacchus3.2.1:12:1:121768101:1	15371525	15415309	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015611}; Zinc finger CCCH domain-containing protein 7A {ECO:0000313|EMBL:JAB09422.1}  [Source:UniProtKB/TrEMBL;Acc:F7H9R8]
ENSCJAG00000006489	KNOWN	protein_coding	ENSCJAG00000006489	chromosome:C_jacchus3.2.1:4:1:171630274:1	12476286	12498268	R	E3 ubiquitin-protein ligase MYLIP {ECO:0000313|EMBL:JAB11257.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012023}  [Source:UniProtKB/TrEMBL;Acc:F7H969]
ENSCJAG00000000264	KNOWN_BY_PROJECTION	protein_coding	CPNE3	chromosome:C_jacchus3.2.1:16:1:96796970:1	38335945	38370316	D	copine III [Source:HGNC Symbol;Acc:HGNC:2316]
ENSCJAG00000006526	NOVEL	pseudogene	ENSCJAG00000006526	chromosome:C_jacchus3.2.1:4:1:171630274:1	12441930	12442560	D	<no descrition>
ENSCJAG00000006527	KNOWN	protein_coding	GMPR	chromosome:C_jacchus3.2.1:4:1:171630274:1	12297526	12362642	R	GMP reductase {ECO:0000256|RuleBase:RU003929}  [Source:UniProtKB/TrEMBL;Acc:F7GF47]
ENSCJAG00000031125	KNOWN_BY_PROJECTION	protein_coding	STMND1	chromosome:C_jacchus3.2.1:4:1:171630274:1	11447234	11463920	R	stathmin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:44668]
ENSCJAG00000032118	NOVEL	protein_coding	ENSCJAG00000032118	chromosome:C_jacchus3.2.1:2:1:204313951:1	127303180	127379861	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044925}  [Source:UniProtKB/TrEMBL;Acc:F7GQG6]
ENSCJAG00000000343	KNOWN_BY_PROJECTION	protein_coding	ATP6V0D2	chromosome:C_jacchus3.2.1:16:1:96796970:1	37906862	37964794	D	ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 [Source:HGNC Symbol;Acc:HGNC:18266]
ENSCJAG00000006579	KNOWN	protein_coding	RBM24	chromosome:C_jacchus3.2.1:4:1:171630274:1	11302187	11314378	R	RNA-binding protein 24 isoform 1 {ECO:0000313|EMBL:JAB22815.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012175}  [Source:UniProtKB/TrEMBL;Acc:F7D9G6]
ENSCJAG00000000346	KNOWN_BY_PROJECTION	protein_coding	PSKH2	chromosome:C_jacchus3.2.1:16:1:96796970:1	37858424	37870648	R	protein serine kinase H2 [Source:HGNC Symbol;Acc:HGNC:18997]
ENSCJAG00000023156	NOVEL	pseudogene	ENSCJAG00000023156	chromosome:C_jacchus3.2.1:16:1:96796970:1	37594611	37595754	D	<no descrition>
ENSCJAG00000008375	KNOWN	protein_coding	RSL1D1	chromosome:C_jacchus3.2.1:12:1:121768101:1	15307677	15323146	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015451}  [Source:UniProtKB/TrEMBL;Acc:F7GPF7]
ENSCJAG00000000379	KNOWN_BY_PROJECTION	protein_coding	C8orf59	chromosome:C_jacchus3.2.1:16:1:96796970:1	37229200	37236260	R	chromosome 8 open reading frame 59 [Source:HGNC Symbol;Acc:HGNC:32235]
ENSCJAG00000000375	KNOWN_BY_PROJECTION	protein_coding	CA13	chromosome:C_jacchus3.2.1:16:1:96796970:1	37265709	37298480	D	carbonic anhydrase XIII [Source:HGNC Symbol;Acc:HGNC:14914]
ENSCJAG00000000387	KNOWN_BY_PROJECTION	protein_coding	E2F5	chromosome:C_jacchus3.2.1:16:1:96796970:1	37184167	37229010	D	E2F transcription factor 5, p130-binding [Source:HGNC Symbol;Acc:HGNC:3119]
ENSCJAG00000006598	KNOWN	protein_coding	CAP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	11101135	11249711	R	Adenylyl cyclase-associated protein {ECO:0000256|RuleBase:RU000647}  [Source:UniProtKB/TrEMBL;Acc:F6ULQ9]
ENSCJAG00000004854	KNOWN_BY_PROJECTION	protein_coding	CMAS	chromosome:C_jacchus3.2.1:3:1:190850796:1	20743168	20743546	D	cytidine monophosphate N-acetylneuraminic acid synthetase [Source:HGNC Symbol;Acc:HGNC:18290]
ENSCJAG00000006674	KNOWN	protein_coding	FAM8A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	11053339	11061716	R	Protein FAM8A1 {ECO:0000313|EMBL:JAB04749.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012332}  [Source:UniProtKB/TrEMBL;Acc:F7HJ03]
ENSCJAG00000000402	KNOWN	protein_coding	RALYL	chromosome:C_jacchus3.2.1:16:1:96796970:1	36740160	36979548	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046943}  [Source:UniProtKB/TrEMBL;Acc:F7I5S5]
ENSCJAG00000020739	KNOWN	protein_coding	CCNT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	37430248	37462408	R	Cyclin-T1 {ECO:0000313|EMBL:JAB09243.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038600}  [Source:UniProtKB/TrEMBL;Acc:F7HZU1]
ENSCJAG00000019489	KNOWN_BY_PROJECTION	protein_coding	CKMT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	126889489	126924418	R	creatine kinase, mitochondrial 2 (sarcomeric) [Source:HGNC Symbol;Acc:HGNC:1996]
ENSCJAG00000000407	KNOWN	protein_coding	SNX16	chromosome:C_jacchus3.2.1:16:1:96796970:1	33829659	33871364	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000701}  [Source:UniProtKB/TrEMBL;Acc:F6SNT5]
ENSCJAG00000016010	KNOWN	protein_coding	SNX29	chromosome:C_jacchus3.2.1:12:1:121768101:1	14582664	15101755	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029468}  [Source:UniProtKB/TrEMBL;Acc:F7IRI9]
ENSCJAG00000016005	KNOWN	protein_coding	CPPED1	chromosome:C_jacchus3.2.1:12:1:121768101:1	14348755	14499043	D	Calcineurin-like phosphoesterase domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB19086.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029457}  [Source:UniProtKB/TrEMBL;Acc:F7HL73]
ENSCJAG00000019486	KNOWN	protein_coding	ZCCHC9	chromosome:C_jacchus3.2.1:2:1:204313951:1	126849203	126859926	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036185}; Zinc finger CCHC domain-containing protein 9 {ECO:0000313|EMBL:JAB31258.1}  [Source:UniProtKB/TrEMBL;Acc:F7H3L0]
ENSCJAG00000020735	KNOWN	protein_coding	KANSL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	37394074	37421867	R	KAT8 regulatory NSL complex subunit 2 {ECO:0000313|EMBL:JAB04660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038572}  [Source:UniProtKB/TrEMBL;Acc:F7I6X8]
ENSCJAG00000035331	KNOWN_BY_PROJECTION	protein_coding	SHISA9	chromosome:C_jacchus3.2.1:12:1:121768101:1	14233058	14247520	R	shisa family member 9 [Source:HGNC Symbol;Acc:HGNC:37231]
ENSCJAG00000000415	KNOWN	protein_coding	CHMP4C	chromosome:C_jacchus3.2.1:16:1:96796970:1	33766195	33795244	D	Charged multivesicular body protein 4c {ECO:0000313|EMBL:JAB02685.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000710}  [Source:UniProtKB/TrEMBL;Acc:F6SNN9]
ENSCJAG00000000421	KNOWN	protein_coding	ZFAND1	chromosome:C_jacchus3.2.1:16:1:96796970:1	33730451	33751369	R	AN1-type zinc finger protein 1 isoform a {ECO:0000313|EMBL:JAB02985.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000718}  [Source:UniProtKB/TrEMBL;Acc:F6SE90]
ENSCJAG00000006685	KNOWN	protein_coding	NUP153	chromosome:C_jacchus3.2.1:4:1:171630274:1	10971043	11048400	D	Nuclear pore complex protein Nup153 {ECO:0000313|EMBL:JAB39681.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012474}  [Source:UniProtKB/TrEMBL;Acc:F7EHG8]
ENSCJAG00000020732	KNOWN_BY_PROJECTION	protein_coding	LALBA	chromosome:C_jacchus3.2.1:9:1:124281992:1	37327511	37329889	R	lactalbumin, alpha- [Source:HGNC Symbol;Acc:HGNC:6480]
ENSCJAG00000001455	NOVEL	pseudogene	ENSCJAG00000001455	chromosome:C_jacchus3.2.1:4:1:171630274:1	10749471	10749702	R	<no descrition>
ENSCJAG00000000425	KNOWN_BY_PROJECTION	protein_coding	IMPA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	33690193	33716120	R	inositol(myo)-1(or 4)-monophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:6050]
ENSCJAG00000035431	NOVEL	protein_coding	ENSCJAG00000035431	chromosome:C_jacchus3.2.1:4:1:171630274:1	10670378	10672196	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044538}  [Source:UniProtKB/TrEMBL;Acc:F7G969]
ENSCJAG00000020725	KNOWN_BY_PROJECTION	protein_coding	C12orf54	chromosome:C_jacchus3.2.1:9:1:124281992:1	37275780	37290341	D	chromosome 12 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:28553]
ENSCJAG00000020724	KNOWN_BY_PROJECTION	protein_coding	OR8S1	chromosome:C_jacchus3.2.1:9:1:124281992:1	37240178	37241644	R	olfactory receptor, family 8, subfamily S, member 1 [Source:HGNC Symbol;Acc:HGNC:19628]
ENSCJAG00000020722	NOVEL	pseudogene	ENSCJAG00000020722	chromosome:C_jacchus3.2.1:9:1:124281992:1	37193824	37194585	R	<no descrition>
ENSCJAG00000019453	KNOWN_BY_PROJECTION	protein_coding	ACOT12	chromosome:C_jacchus3.2.1:2:1:204313951:1	126762130	126829804	D	acyl-CoA thioesterase 12 [Source:HGNC Symbol;Acc:HGNC:24436]
ENSCJAG00000000433	KNOWN_BY_PROJECTION	protein_coding	FABP12	chromosome:C_jacchus3.2.1:16:1:96796970:1	33564307	33571362	R	fatty acid binding protein 12 [Source:HGNC Symbol;Acc:HGNC:34524]
ENSCJAG00000000474	KNOWN	protein_coding	MRPS28	chromosome:C_jacchus3.2.1:16:1:96796970:1	32006963	32159695	R	28S ribosomal protein S28, mitochondrial {ECO:0000313|EMBL:JAB01694.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000803}  [Source:UniProtKB/TrEMBL;Acc:F6Q8A5]
ENSCJAG00000001057	KNOWN_BY_PROJECTION	protein_coding	IPO8	chromosome:C_jacchus3.2.1:9:1:124281992:1	36552924	36623969	D	importin 8 [Source:HGNC Symbol;Acc:HGNC:9853]
ENSCJAG00000000477	KNOWN	protein_coding	HEY1	chromosome:C_jacchus3.2.1:16:1:96796970:1	31848851	31852675	R	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform b {ECO:0000313|EMBL:JAB12166.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000819}  [Source:UniProtKB/TrEMBL;Acc:F6PYF0]
ENSCJAG00000011254	KNOWN_BY_PROJECTION	protein_coding	ATG10	chromosome:C_jacchus3.2.1:2:1:204313951:1	125886619	126169356	R	autophagy related 10 [Source:HGNC Symbol;Acc:HGNC:20315]
ENSCJAG00000011247	KNOWN	protein_coding	ENSCJAG00000011247	chromosome:C_jacchus3.2.1:2:1:204313951:1	125865576	125867749	D	40S ribosomal protein S23 {ECO:0000313|EMBL:JAB31795.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020713}  [Source:UniProtKB/TrEMBL;Acc:F7H6F1]
ENSCJAG00000000485	KNOWN	protein_coding	STMN2	chromosome:C_jacchus3.2.1:16:1:96796970:1	31685733	31741425	D	Stathmin {ECO:0000256|RuleBase:RU004388}  [Source:UniProtKB/TrEMBL;Acc:F6Q1F2]
ENSCJAG00000000507	KNOWN_BY_PROJECTION	protein_coding	PKIA	chromosome:C_jacchus3.2.1:16:1:96796970:1	30627150	30714969	D	protein kinase (cAMP-dependent, catalytic) inhibitor alpha [Source:HGNC Symbol;Acc:HGNC:9017]
ENSCJAG00000000512	KNOWN	protein_coding	PEX2	chromosome:C_jacchus3.2.1:16:1:96796970:1	29212385	29229878	R	Peroxisomal biogenesis factor 2 {ECO:0000313|EMBL:JAB06765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000871}  [Source:UniProtKB/TrEMBL;Acc:F6U7X0]
ENSCJAG00000000517	KNOWN_BY_PROJECTION	protein_coding	ZFHX4	chromosome:C_jacchus3.2.1:16:1:96796970:1	28900257	29092279	D	zinc finger homeobox 4 [Source:HGNC Symbol;Acc:HGNC:30939]
ENSCJAG00000015866	KNOWN	protein_coding	PARN	chromosome:C_jacchus3.2.1:12:1:121768101:1	12355795	12560138	D	Poly(A)-specific ribonuclease PARN isoform 1 {ECO:0000313|EMBL:JAB09691.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029307}  [Source:UniProtKB/TrEMBL;Acc:F7IH95]
ENSCJAG00000015851	KNOWN_BY_PROJECTION	protein_coding	BFAR	chromosome:C_jacchus3.2.1:12:1:121768101:1	12312919	12343753	R	bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
ENSCJAG00000004980	KNOWN	protein_coding	CLCN3	chromosome:C_jacchus3.2.1:3:1:190850796:1	19974861	20075489	R	H(+)/Cl(-) exchange transporter 3 isoform b {ECO:0000313|EMBL:JAB03980.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009151}  [Source:UniProtKB/TrEMBL;Acc:F7IQ66]
ENSCJAG00000037369	KNOWN	protein_coding	CRYZL1	chromosome:C_jacchus3.2.1:21:1:50472720:1	37601831	37653367	R	Quinone oxidoreductase-like protein 1 {ECO:0000313|EMBL:JAB04408.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005528}  [Source:UniProtKB/TrEMBL;Acc:F7ILS7]
ENSCJAG00000008330	NOVEL	pseudogene	ENSCJAG00000008330	chromosome:C_jacchus3.2.1:16:1:96796970:1	26964299	26965136	R	<no descrition>
ENSCJAG00000005024	NOVEL	protein_coding	ENSCJAG00000005024	chromosome:C_jacchus3.2.1:3:1:190850796:1	19966829	19967461	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009165}  [Source:UniProtKB/TrEMBL;Acc:F7IMU5]
ENSCJAG00000005031	NOVEL	protein_coding	ENSCJAG00000005031	chromosome:C_jacchus3.2.1:3:1:190850796:1	19928707	19964159	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009169}  [Source:UniProtKB/TrEMBL;Acc:F7IMT9]
ENSCJAG00000000571	NOVEL	protein_coding	ENSCJAG00000000571	chromosome:C_jacchus3.2.1:16:1:96796970:1	26533711	26535751	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000990}  [Source:UniProtKB/TrEMBL;Acc:F6R4G5]
ENSCJAG00000000577	KNOWN_BY_PROJECTION	protein_coding	LY96	chromosome:C_jacchus3.2.1:16:1:96796970:1	26454404	26486872	D	lymphocyte antigen 96 [Source:HGNC Symbol;Acc:HGNC:17156]
ENSCJAG00000003034	KNOWN	protein_coding	DONSON	chromosome:C_jacchus3.2.1:21:1:50472720:1	37590819	37607974	R	Protein downstream neighbor of Son {ECO:0000313|EMBL:JAB43253.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005542}  [Source:UniProtKB/TrEMBL;Acc:F7IJH3]
ENSCJAG00000000587	KNOWN	protein_coding	TCEB1	chromosome:C_jacchus3.2.1:16:1:96796970:1	26392699	26426295	R	Transcription elongation factor B polypeptide 1 isoform a {ECO:0000313|EMBL:JAB03566.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001009}  [Source:UniProtKB/TrEMBL;Acc:F7C1R4]
ENSCJAG00000007605	NOVEL	protein_coding	ENSCJAG00000007605	chromosome:C_jacchus3.2.1:16:1:96796970:1	26168214	26270165	R	<no descrition>
ENSCJAG00000011161	KNOWN_BY_PROJECTION	protein_coding	VCAN	chromosome:C_jacchus3.2.1:2:1:204313951:1	124496036	124610429	R	versican [Source:HGNC Symbol;Acc:HGNC:2464]
ENSCJAG00000003062	KNOWN_BY_PROJECTION	protein_coding	SON	chromosome:C_jacchus3.2.1:21:1:50472720:1	37555724	37590462	D	SON DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11183]
ENSCJAG00000007632	KNOWN_BY_PROJECTION	protein_coding	STAU2	chromosome:C_jacchus3.2.1:16:1:96796970:1	25700099	26036825	R	staufen double-stranded RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11371]
ENSCJAG00000005048	KNOWN	protein_coding	AADAT	chromosome:C_jacchus3.2.1:3:1:190850796:1	19596876	19623056	D	Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial {ECO:0000313|EMBL:JAB04284.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009241}  [Source:UniProtKB/TrEMBL;Acc:F7I8M7]
ENSCJAG00000007664	KNOWN	protein_coding	RDH10	chromosome:C_jacchus3.2.1:16:1:96796970:1	25573562	25601362	D	Retinol dehydrogenase 10 {ECO:0000313|EMBL:JAB06790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014226}  [Source:UniProtKB/TrEMBL;Acc:F7HVD4]
ENSCJAG00000011134	KNOWN	protein_coding	EDIL3	chromosome:C_jacchus3.2.1:2:1:204313951:1	123977282	124095491	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020530}  [Source:UniProtKB/TrEMBL;Acc:F7H1B6]
ENSCJAG00000001215	KNOWN_BY_PROJECTION	protein_coding	FAM60A	chromosome:C_jacchus3.2.1:9:1:124281992:1	36087953	36134073	D	family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:HGNC:30702]
ENSCJAG00000008124	NOVEL	pseudogene	ENSCJAG00000008124	chromosome:C_jacchus3.2.1:9:1:124281992:1	35859898	35860563	R	<no descrition>
ENSCJAG00000011132	NOVEL	pseudogene	ENSCJAG00000011132	chromosome:C_jacchus3.2.1:2:1:204313951:1	122223045	122223763	D	<no descrition>
ENSCJAG00000007714	KNOWN	protein_coding	TERF1	chromosome:C_jacchus3.2.1:16:1:96796970:1	25280645	25320856	D	Telomeric repeat-binding factor 1 isoform 2 {ECO:0000313|EMBL:JAB09349.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014294}  [Source:UniProtKB/TrEMBL;Acc:F7IQX2]
ENSCJAG00000003083	KNOWN	protein_coding	GART	chromosome:C_jacchus3.2.1:21:1:50472720:1	37510996	37555561	R	Phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase isoform 1 (Predicted) {ECO:0000313|EMBL:ABZ80252.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047303}  [Source:UniProtKB/TrEMBL;Acc:B0VXG8]
ENSCJAG00000007724	NOVEL	pseudogene	ENSCJAG00000007724	chromosome:C_jacchus3.2.1:16:1:96796970:1	25202511	25204347	D	<no descrition>
ENSCJAG00000031128	NOVEL	protein_coding	ENSCJAG00000031128	chromosome:C_jacchus3.2.1:16:1:96796970:1	24878413	24879232	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050959}  [Source:UniProtKB/TrEMBL;Acc:F6TB13]
ENSCJAG00000007732	NOVEL	pseudogene	ENSCJAG00000007732	chromosome:C_jacchus3.2.1:16:1:96796970:1	24461390	24462469	R	<no descrition>
ENSCJAG00000033828	NOVEL	protein_coding	ENSCJAG00000033828	chromosome:C_jacchus3.2.1:16:1:96796970:1	24440576	24448227	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045578}  [Source:UniProtKB/TrEMBL;Acc:F6S895]
ENSCJAG00000005133	KNOWN	protein_coding	SAP30	chromosome:C_jacchus3.2.1:3:1:190850796:1	16140649	16147269	R	Histone deacetylase complex subunit SAP30 {ECO:0000313|EMBL:JAB04046.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009363}  [Source:UniProtKB/TrEMBL;Acc:F7H7Z7]
ENSCJAG00000005138	KNOWN	protein_coding	SCRG1	chromosome:C_jacchus3.2.1:3:1:190850796:1	16119845	16129886	D	Scrapie-responsive protein 1 {ECO:0000313|EMBL:JAB07974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009368}  [Source:UniProtKB/TrEMBL;Acc:F7H7Y2]
ENSCJAG00000019247	NOVEL	protein_coding	ENSCJAG00000019247	chromosome:C_jacchus3.2.1:4:1:171630274:1	8971881	8973078	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035724}  [Source:UniProtKB/TrEMBL;Acc:F7FMC0]
ENSCJAG00000005144	KNOWN_BY_PROJECTION	protein_coding	HAND2	chromosome:C_jacchus3.2.1:3:1:190850796:1	15950694	15954493	D	heart and neural crest derivatives expressed 2 [Source:HGNC Symbol;Acc:HGNC:4808]
ENSCJAG00000007005	NOVEL	protein_coding	ENSCJAG00000007005	chromosome:C_jacchus3.2.1:4:1:171630274:1	8789886	8791176	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012971}  [Source:UniProtKB/TrEMBL;Acc:F6R3U8]
ENSCJAG00000019544	KNOWN_BY_PROJECTION	protein_coding	E2F3	chromosome:C_jacchus3.2.1:4:1:171630274:1	8032559	8131062	R	E2F transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:3115]
ENSCJAG00000003146	KNOWN	protein_coding	TMEM50B	chromosome:C_jacchus3.2.1:21:1:50472720:1	37429857	37484738	R	Transmembrane protein 50B {ECO:0000313|EMBL:JAB03624.1}; Transmembrane protein 50B (Predicted) {ECO:0000313|EMBL:ABZ80250.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005726}  [Source:UniProtKB/TrEMBL;Acc:B0VXG6]
ENSCJAG00000035211	KNOWN_BY_PROJECTION	protein_coding	IFNGR2	chromosome:C_jacchus3.2.1:21:1:50472720:1	37410596	37432108	D	interferon gamma receptor 2 (interferon gamma transducer 1) [Source:HGNC Symbol;Acc:HGNC:5440]
ENSCJAG00000007384	KNOWN_BY_PROJECTION	protein_coding	CDKAL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	7280366	8028940	R	CDK5 regulatory subunit associated protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:21050]
ENSCJAG00000007866	KNOWN	protein_coding	LACTB2	chromosome:C_jacchus3.2.1:16:1:96796970:1	22893774	22925675	R	Beta-lactamase-like protein 2 {ECO:0000313|EMBL:JAB10168.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014601}  [Source:UniProtKB/TrEMBL;Acc:F7I4J0]
ENSCJAG00000007972	NOVEL	pseudogene	ENSCJAG00000007972	chromosome:C_jacchus3.2.1:16:1:96796970:1	22837655	22837798	D	<no descrition>
ENSCJAG00000005967	NOVEL	protein_coding	PRL	chromosome:C_jacchus3.2.1:4:1:171630274:1	6097865	6108367	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010972}  [Source:UniProtKB/TrEMBL;Acc:F7ICU3]
ENSCJAG00000035282	NOVEL	pseudogene	ENSCJAG00000035282	chromosome:C_jacchus3.2.1:21:1:50472720:1	37211857	37212292	R	<no descrition>
ENSCJAG00000005978	KNOWN	protein_coding	NRSN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	4297051	4318119	R	Neurensin-1 {ECO:0000313|EMBL:JAB17841.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010990}  [Source:UniProtKB/TrEMBL;Acc:F7I875]
ENSCJAG00000005984	KNOWN_BY_PROJECTION	protein_coding	DCDC2	chromosome:C_jacchus3.2.1:4:1:171630274:1	4085764	4292547	D	doublecortin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18141]
ENSCJAG00000009439	KNOWN_BY_PROJECTION	protein_coding	OLIG2	chromosome:C_jacchus3.2.1:21:1:50472720:1	36982405	37034914	D	oligodendrocyte lineage transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:9398]
ENSCJAG00000009437	KNOWN	protein_coding	C21ORF62	chromosome:C_jacchus3.2.1:21:1:50472720:1	36757783	36779746	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047449}; Uncharacterized protein C21orf62 {ECO:0000313|EMBL:JAB12229.1}  [Source:UniProtKB/TrEMBL;Acc:F7II25]
ENSCJAG00000007893	KNOWN	protein_coding	TRAM1	chromosome:C_jacchus3.2.1:16:1:96796970:1	22836689	22871284	R	Translocating chain-associated membrane protein {ECO:0000256|PIRNR:PIRNR005449}  [Source:UniProtKB/TrEMBL;Acc:F7INC3]
ENSCJAG00000033937	NOVEL	protein_coding	ENSCJAG00000033937	chromosome:C_jacchus3.2.1:21:1:50472720:1	36753221	36761153	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051308}  [Source:UniProtKB/TrEMBL;Acc:F6ZK70]
ENSCJAG00000006007	KNOWN	protein_coding	MRS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	4018911	4041620	R	Magnesium transporter MRS2 homolog, mitochondrial {ECO:0000313|EMBL:JAB06409.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047866}  [Source:UniProtKB/TrEMBL;Acc:F7GS02]
ENSCJAG00000007974	KNOWN	protein_coding	NCOA2	chromosome:C_jacchus3.2.1:16:1:96796970:1	22353416	22674652	R	Nuclear receptor coactivator 2 {ECO:0000313|EMBL:JAB02990.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014855}  [Source:UniProtKB/TrEMBL;Acc:F7I6R1]
ENSCJAG00000008072	KNOWN_BY_PROJECTION	protein_coding	DENND5B	chromosome:C_jacchus3.2.1:9:1:124281992:1	35816964	36027992	D	DENN/MADD domain containing 5B [Source:HGNC Symbol;Acc:HGNC:28338]
ENSCJAG00000009330	KNOWN	protein_coding	C21ORF66	chromosome:C_jacchus3.2.1:21:1:50472720:1	36698458	36737557	R	GC-rich sequence DNA-binding factor 1 isoform 1 {ECO:0000313|EMBL:JAB10095.1}; GC-rich sequence DNA-binding factor candidate isoform 1 (Predicted) {ECO:0000313|EMBL:ABZ80245.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017264}  [Source:UniProtKB/TrEMBL;Acc:B0VXG1]
ENSCJAG00000005318	KNOWN_BY_PROJECTION	protein_coding	NTAN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	12130084	12142138	R	N-terminal asparagine amidase [Source:HGNC Symbol;Acc:HGNC:29909]
ENSCJAG00000005158	KNOWN	protein_coding	FBXO8	chromosome:C_jacchus3.2.1:3:1:190850796:1	15156400	15203340	D	F-box only protein 8 {ECO:0000313|EMBL:JAB06663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009447}  [Source:UniProtKB/TrEMBL;Acc:F7G042]
ENSCJAG00000010941	KNOWN	protein_coding	RASA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	120698069	120918878	R	Ras GTPase-activating protein 1 isoform 1 {ECO:0000313|EMBL:JAB26906.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020518}  [Source:UniProtKB/TrEMBL;Acc:F7H6H0]
ENSCJAG00000005106	KNOWN_BY_PROJECTION	protein_coding	SLCO5A1	chromosome:C_jacchus3.2.1:16:1:96796970:1	21994485	22143745	R	solute carrier organic anion transporter family, member 5A1 [Source:HGNC Symbol;Acc:HGNC:19046]
ENSCJAG00000013027	NOVEL	protein_coding	ENSCJAG00000013027	chromosome:C_jacchus3.2.1:9:1:124281992:1	35353918	35355250	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023917}  [Source:UniProtKB/TrEMBL;Acc:F7GBI7]
ENSCJAG00000009187	KNOWN_BY_PROJECTION	protein_coding	SYNJ1	chromosome:C_jacchus3.2.1:21:1:50472720:1	36603942	36692456	R	synaptojanin 1 [Source:HGNC Symbol;Acc:HGNC:11503]
ENSCJAG00000005003	KNOWN_BY_PROJECTION	protein_coding	SULF1	chromosome:C_jacchus3.2.1:16:1:96796970:1	21815631	21982603	D	sulfatase 1 [Source:HGNC Symbol;Acc:HGNC:20391]
ENSCJAG00000005411	NOVEL	protein_coding	ENSCJAG00000005411	chromosome:C_jacchus3.2.1:12:1:121768101:1	12014872	12022869	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009878}  [Source:UniProtKB/TrEMBL;Acc:F7F6H3]
ENSCJAG00000018291	KNOWN	protein_coding	BICD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	35011958	35336259	R	Protein bicaudal D homolog 1 isoform 2 {ECO:0000313|EMBL:JAB12546.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033877}  [Source:UniProtKB/TrEMBL;Acc:F6QBM4]
ENSCJAG00000018234	KNOWN_BY_PROJECTION	protein_coding	FGD4	chromosome:C_jacchus3.2.1:9:1:124281992:1	34745790	34886670	R	FYVE, RhoGEF and PH domain containing 4 [Source:HGNC Symbol;Acc:HGNC:19125]
ENSCJAG00000010902	KNOWN	protein_coding	CCNH	chromosome:C_jacchus3.2.1:2:1:204313951:1	120670885	120695725	D	Cyclin-H isoform 1 {ECO:0000313|EMBL:JAB11019.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020170}  [Source:UniProtKB/TrEMBL;Acc:F7GB55]
ENSCJAG00000009156	NOVEL	protein_coding	ENSCJAG00000009156	chromosome:C_jacchus3.2.1:21:1:50472720:1	36547639	36549519	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016774}  [Source:UniProtKB/TrEMBL;Acc:F7AKG0]
ENSCJAG00000006084	KNOWN_BY_PROJECTION	protein_coding	KIAA0319	chromosome:C_jacchus3.2.1:4:1:171630274:1	3834365	3879961	D	KIAA0319 [Source:HGNC Symbol;Acc:HGNC:21580]
ENSCJAG00000009073	KNOWN_BY_PROJECTION	protein_coding	HUNK	chromosome:C_jacchus3.2.1:21:1:50472720:1	35902234	35976388	D	hormonally up-regulated Neu-associated kinase [Source:HGNC Symbol;Acc:HGNC:13326]
ENSCJAG00000032293	NOVEL	protein_coding	ENSCJAG00000032293	chromosome:C_jacchus3.2.1:16:1:96796970:1	19754716	19755859	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008727}  [Source:UniProtKB/TrEMBL;Acc:F7HMF8]
ENSCJAG00000011878	NOVEL	pseudogene	ENSCJAG00000011878	chromosome:C_jacchus3.2.1:2:1:204313951:1	119352052	119352585	R	<no descrition>
ENSCJAG00000006161	KNOWN	protein_coding	GMNN	chromosome:C_jacchus3.2.1:4:1:171630274:1	3653793	3665928	R	Geminin {ECO:0000313|EMBL:JAB07290.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011331}  [Source:UniProtKB/TrEMBL;Acc:F7IB66]
ENSCJAG00000005426	KNOWN	protein_coding	KIAA0430	chromosome:C_jacchus3.2.1:12:1:121768101:1	11738423	11784842	D	Meiosis arrest female protein 1 isoform 1 {ECO:0000313|EMBL:JAB33926.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010039}  [Source:UniProtKB/TrEMBL;Acc:F7C9T3]
ENSCJAG00000006174	NOVEL	protein_coding	ENSCJAG00000006174	chromosome:C_jacchus3.2.1:4:1:171630274:1	3652212	3652738	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011334}  [Source:UniProtKB/TrEMBL;Acc:F7IB63]
ENSCJAG00000005503	KNOWN	protein_coding	NDE1	chromosome:C_jacchus3.2.1:12:1:121768101:1	11657118	11718185	R	Nuclear distribution protein nudE homolog 1 {ECO:0000313|EMBL:JAB16577.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010101}  [Source:UniProtKB/TrEMBL;Acc:F6YTY6]
ENSCJAG00000008993	KNOWN	protein_coding	SCAF4	chromosome:C_jacchus3.2.1:21:1:50472720:1	35638592	35703173	R	Splicing factor, arginine/serine-rich 15 isoform 1 {ECO:0000313|EMBL:JAB04313.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016619}  [Source:UniProtKB/TrEMBL;Acc:F6Y2H6]
ENSCJAG00000010799	KNOWN	protein_coding	MEF2C	chromosome:C_jacchus3.2.1:2:1:204313951:1	119089448	119269068	D	Myocyte-specific enhancer factor 2C isoform 1 {ECO:0000313|EMBL:JAB17802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019989}  [Source:UniProtKB/TrEMBL;Acc:F6YQS7]
ENSCJAG00000004730	KNOWN_BY_PROJECTION	protein_coding	ARFGEF1	chromosome:C_jacchus3.2.1:16:1:96796970:1	19550578	19667026	R	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) [Source:HGNC Symbol;Acc:HGNC:15772]
ENSCJAG00000010792	NOVEL	pseudogene	ENSCJAG00000010792	chromosome:C_jacchus3.2.1:2:1:204313951:1	118671709	118672567	R	<no descrition>
ENSCJAG00000034536	NOVEL	protein_coding	ENSCJAG00000034536	chromosome:C_jacchus3.2.1:2:1:204313951:1	118192093	118193147	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048714}  [Source:UniProtKB/TrEMBL;Acc:F6R5C8]
ENSCJAG00000021998	NOVEL	pseudogene	ENSCJAG00000021998	chromosome:C_jacchus3.2.1:2:1:204313951:1	117638337	117639654	D	<no descrition>
ENSCJAG00000005271	NOVEL	protein_coding	ENSCJAG00000005271	chromosome:C_jacchus3.2.1:3:1:190850796:1	14315945	14320361	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009637}  [Source:UniProtKB/TrEMBL;Acc:F7FZJ7]
ENSCJAG00000006184	KNOWN_BY_PROJECTION	protein_coding	FAM65B	chromosome:C_jacchus3.2.1:4:1:171630274:1	3566175	3629720	D	family with sequence similarity 65, member B [Source:HGNC Symbol;Acc:HGNC:13872]
ENSCJAG00000008983	KNOWN_BY_PROJECTION	protein_coding	SOD1	chromosome:C_jacchus3.2.1:21:1:50472720:1	35627267	35636726	D	superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:HGNC:11179]
ENSCJAG00000004674	KNOWN_BY_PROJECTION	protein_coding	CSPP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	19402927	19531702	D	centrosome and spindle pole associated protein 1 [Source:HGNC Symbol;Acc:HGNC:26193]
ENSCJAG00000032053	NOVEL	pseudogene	ENSCJAG00000032053	chromosome:C_jacchus3.2.1:4:1:171630274:1	3136708	3137158	R	<no descrition>
ENSCJAG00000010761	KNOWN	protein_coding	CETN3	chromosome:C_jacchus3.2.1:2:1:204313951:1	117542942	117558903	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019875}  [Source:UniProtKB/TrEMBL;Acc:F7BT59]
ENSCJAG00000004632	KNOWN	protein_coding	COPS5	chromosome:C_jacchus3.2.1:16:1:96796970:1	19380650	19400845	R	COP9 signalosome complex subunit 5 {ECO:0000313|EMBL:JAB03083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008461}  [Source:UniProtKB/TrEMBL;Acc:F7IAR2]
ENSCJAG00000010755	KNOWN	protein_coding	MBLAC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	117455545	117490921	D	Metallo-beta-lactamase domain-containing protein 2 {ECO:0000313|EMBL:JAB05334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019821}  [Source:UniProtKB/TrEMBL;Acc:F7CN61]
ENSCJAG00000010739	KNOWN	protein_coding	LYSMD3	chromosome:C_jacchus3.2.1:2:1:204313951:1	117400489	117414449	D	LysM and putative peptidoglycan-binding domain-containing protein 3 {ECO:0000313|EMBL:JAB08278.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019794}  [Source:UniProtKB/TrEMBL;Acc:F6WD16]
ENSCJAG00000004616	KNOWN_BY_PROJECTION	protein_coding	PPP1R42	chromosome:C_jacchus3.2.1:16:1:96796970:1	19291849	19366064	R	protein phosphatase 1, regulatory subunit 42 [Source:HGNC Symbol;Acc:HGNC:33732]
ENSCJAG00000010747	KNOWN	protein_coding	POLR3G	chromosome:C_jacchus3.2.1:2:1:204313951:1	117282067	117455425	R	DNA-directed RNA polymerase III subunit RPC7 {ECO:0000313|EMBL:JAB04306.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019814}  [Source:UniProtKB/TrEMBL;Acc:F7CNE9]
ENSCJAG00000005629	KNOWN_BY_PROJECTION	protein_coding	FOPNL	chromosome:C_jacchus3.2.1:12:1:121768101:1	11473602	11500238	D	FGFR1OP N-terminal like [Source:HGNC Symbol;Acc:HGNC:26435]
ENSCJAG00000010693	KNOWN_BY_PROJECTION	protein_coding	SCGN	chromosome:C_jacchus3.2.1:4:1:171630274:1	3084963	3133505	D	secretagogin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:HGNC:16941]
ENSCJAG00000008867	NOVEL	protein_coding	ENSCJAG00000008867	chromosome:C_jacchus3.2.1:21:1:50472720:1	34628770	34629123	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048495}  [Source:UniProtKB/TrEMBL;Acc:F7H8B5]
ENSCJAG00000008858	NOVEL	protein_coding	ENSCJAG00000008858	chromosome:C_jacchus3.2.1:21:1:50472720:1	34492390	34492595	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044932}  [Source:UniProtKB/TrEMBL;Acc:F7GJ07]
ENSCJAG00000008847	NOVEL	protein_coding	ENSCJAG00000008847	chromosome:C_jacchus3.2.1:21:1:50472720:1	34460408	34460812	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016210}  [Source:UniProtKB/TrEMBL;Acc:F6YPC3]
ENSCJAG00000008797	NOVEL	protein_coding	ENSCJAG00000008797	chromosome:C_jacchus3.2.1:21:1:50472720:1	34345277	34411638	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048764}  [Source:UniProtKB/TrEMBL;Acc:F6QJ05]
ENSCJAG00000004571	NOVEL	protein_coding	ENSCJAG00000004571	chromosome:C_jacchus3.2.1:16:1:96796970:1	19115076	19115894	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008284}  [Source:UniProtKB/TrEMBL;Acc:F7I664]
ENSCJAG00000022699	NOVEL	pseudogene	ENSCJAG00000022699	chromosome:C_jacchus3.2.1:21:1:50472720:1	34070536	34072427	R	<no descrition>
ENSCJAG00000005641	KNOWN_BY_PROJECTION	protein_coding	ABCC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	11226937	11425987	R	ATP-binding cassette, sub-family C (CFTR/MRP), member 1 [Source:HGNC Symbol;Acc:HGNC:51]
ENSCJAG00000022698	NOVEL	pseudogene	ENSCJAG00000022698	chromosome:C_jacchus3.2.1:21:1:50472720:1	34017403	34018557	R	<no descrition>
ENSCJAG00000010578	KNOWN_BY_PROJECTION	protein_coding	GPR98	chromosome:C_jacchus3.2.1:2:1:204313951:1	116748260	117298544	R	G protein-coupled receptor 98 [Source:HGNC Symbol;Acc:HGNC:17416]
ENSCJAG00000005386	KNOWN_BY_PROJECTION	protein_coding	SPATA4	chromosome:C_jacchus3.2.1:3:1:190850796:1	13389955	13402472	D	spermatogenesis associated 4 [Source:HGNC Symbol;Acc:HGNC:17333]
ENSCJAG00000008651	KNOWN	protein_coding	BACH1	chromosome:C_jacchus3.2.1:21:1:50472720:1	33151225	33197387	D	Transcription regulator protein BACH1 {ECO:0000313|EMBL:JAB08213.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051511}  [Source:UniProtKB/TrEMBL;Acc:F6X937]
ENSCJAG00000005430	KNOWN	protein_coding	SPCS3	chromosome:C_jacchus3.2.1:3:1:190850796:1	13255898	13265793	R	Signal peptidase complex subunit 3 {ECO:0000313|EMBL:JAB04604.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009913}  [Source:UniProtKB/TrEMBL;Acc:F7HHH3]
ENSCJAG00000008640	KNOWN_BY_PROJECTION	protein_coding	MAP3K7CL	chromosome:C_jacchus3.2.1:21:1:50472720:1	32966072	33033543	D	MAP3K7 C-terminal like [Source:HGNC Symbol;Acc:HGNC:16457]
ENSCJAG00000010569	NOVEL	protein_coding	ENSCJAG00000010569	chromosome:C_jacchus3.2.1:2:1:204313951:1	116554316	116554773	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019493}  [Source:UniProtKB/TrEMBL;Acc:F6SGW8]
ENSCJAG00000004466	KNOWN	protein_coding	MYBL1	chromosome:C_jacchus3.2.1:16:1:96796970:1	18896598	18941978	R	Myb-related protein A isoform 2 {ECO:0000313|EMBL:JAB52087.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008168}  [Source:UniProtKB/TrEMBL;Acc:F7ISE4]
ENSCJAG00000010524	NOVEL	protein_coding	ENSCJAG00000010524	chromosome:C_jacchus3.2.1:2:1:204313951:1	115552798	115553767	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019412}  [Source:UniProtKB/TrEMBL;Acc:F6U1I0]
ENSCJAG00000010525	KNOWN	protein_coding	ARRDC3	chromosome:C_jacchus3.2.1:2:1:204313951:1	116521500	116536319	D	Arrestin domain-containing protein 3 {ECO:0000313|EMBL:JAB06245.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019486}  [Source:UniProtKB/TrEMBL;Acc:F6SRT5]
ENSCJAG00000010830	KNOWN_BY_PROJECTION	protein_coding	SLC17A4	chromosome:C_jacchus3.2.1:4:1:171630274:1	2603906	2631323	R	solute carrier family 17, member 4 [Source:HGNC Symbol;Acc:HGNC:10932]
ENSCJAG00000005431	NOVEL	protein_coding	ENSCJAG00000005431	chromosome:C_jacchus3.2.1:2:1:204313951:1	114969538	114971038	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046686}  [Source:UniProtKB/TrEMBL;Acc:F7IK48]
ENSCJAG00000004450	KNOWN	protein_coding	C8ORF46	chromosome:C_jacchus3.2.1:16:1:96796970:1	18820660	18845914	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008070}; Uncharacterized protein C8orf46 {ECO:0000313|EMBL:JAB19016.1}  [Source:UniProtKB/TrEMBL;Acc:F6YA21]
ENSCJAG00000037778	NOVEL	protein_coding	ENSCJAG00000037778	chromosome:C_jacchus3.2.1:16:1:96796970:1	18819106	18819191	R	<no descrition>
ENSCJAG00000010492	KNOWN_BY_PROJECTION	protein_coding	NR2F1	chromosome:C_jacchus3.2.1:2:1:204313951:1	114210273	114220050	R	nuclear receptor subfamily 2, group F, member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
ENSCJAG00000008503	KNOWN	protein_coding	CCT8	chromosome:C_jacchus3.2.1:21:1:50472720:1	32884792	32902258	R	T-complex protein 1 subunit theta {ECO:0000313|EMBL:JAB04429.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015887}  [Source:UniProtKB/TrEMBL;Acc:F7G3V2]
ENSCJAG00000010852	KNOWN_BY_PROJECTION	protein_coding	SLC17A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	2542535	2602229	D	solute carrier family 17 (organic anion transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10929]
ENSCJAG00000004434	KNOWN	protein_coding	ADHFE1	chromosome:C_jacchus3.2.1:16:1:96796970:1	18755188	18792600	D	Hydroxyacid-oxoacid transhydrogenase, mitochondrial {ECO:0000313|EMBL:JAB20354.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047608}  [Source:UniProtKB/TrEMBL;Acc:F7H822]
ENSCJAG00000010444	KNOWN	protein_coding	FAM172A	chromosome:C_jacchus3.2.1:2:1:204313951:1	113664366	114182169	D	Protein FAM172A isoform 1 {ECO:0000313|EMBL:JAB09023.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019307}  [Source:UniProtKB/TrEMBL;Acc:F6RXB2]
ENSCJAG00000009384	KNOWN	protein_coding	TRIM55	chromosome:C_jacchus3.2.1:16:1:96796970:1	18440930	18489676	D	Tripartite motif-containing protein 55 isoform 1 {ECO:0000313|EMBL:JAB37979.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017207}  [Source:UniProtKB/TrEMBL;Acc:F7I337]
ENSCJAG00000009369	KNOWN_BY_PROJECTION	protein_coding	DNAJC5B	chromosome:C_jacchus3.2.1:16:1:96796970:1	18350383	18424262	D	DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Source:HGNC Symbol;Acc:HGNC:24138]
ENSCJAG00000010934	NOVEL	pseudogene	ENSCJAG00000010934	chromosome:C_jacchus3.2.1:4:1:171630274:1	2432982	2433741	D	<no descrition>
ENSCJAG00000010418	KNOWN_BY_PROJECTION	protein_coding	KIAA0825	chromosome:C_jacchus3.2.1:2:1:204313951:1	113171814	113401299	D	KIAA0825 [Source:HGNC Symbol;Acc:HGNC:28532]
ENSCJAG00000008373	KNOWN_BY_PROJECTION	protein_coding	LTN1	chromosome:C_jacchus3.2.1:21:1:50472720:1	32767850	32834010	R	listerin E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:13082]
ENSCJAG00000036760	KNOWN_BY_PROJECTION	protein_coding	HIST1H2AD	chromosome:C_jacchus3.2.1:4:1:171630274:1	2386695	2659076	D	histone cluster 1, H2ad [Source:HGNC Symbol;Acc:HGNC:4729]
ENSCJAG00000033636	NOVEL	pseudogene	ENSCJAG00000033636	chromosome:C_jacchus3.2.1:4:1:171630274:1	2371033	2371357	R	<no descrition>
ENSCJAG00000031172	NOVEL	pseudogene	ENSCJAG00000031172	chromosome:C_jacchus3.2.1:21:1:50472720:1	32734318	32734646	D	<no descrition>
ENSCJAG00000009250	NOVEL	pseudogene	ENSCJAG00000009250	chromosome:C_jacchus3.2.1:16:1:96796970:1	17678562	17679048	D	<no descrition>
ENSCJAG00000031980	NOVEL	protein_coding	ENSCJAG00000031980	chromosome:C_jacchus3.2.1:21:1:50472720:1	32697184	32698108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050393}  [Source:UniProtKB/TrEMBL;Acc:F7EYP5]
ENSCJAG00000032225	NOVEL	protein_coding	ENSCJAG00000032225	chromosome:C_jacchus3.2.1:21:1:50472720:1	31425765	31426658	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048673}  [Source:UniProtKB/TrEMBL;Acc:F6SPV1]
ENSCJAG00000009234	KNOWN	protein_coding	BHLHE22	chromosome:C_jacchus3.2.1:16:1:96796970:1	16942593	16946495	D	Class E basic helix-loop-helix protein 22 {ECO:0000313|EMBL:JAB32783.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016921}  [Source:UniProtKB/TrEMBL;Acc:F6UDG3]
ENSCJAG00000010329	KNOWN_BY_PROJECTION	protein_coding	FAM81B	chromosome:C_jacchus3.2.1:2:1:204313951:1	112290506	112356729	R	family with sequence similarity 81, member B [Source:HGNC Symbol;Acc:HGNC:26335]
ENSCJAG00000009205	KNOWN_BY_PROJECTION	protein_coding	TTPA	chromosome:C_jacchus3.2.1:16:1:96796970:1	15454400	15477100	R	tocopherol (alpha) transfer protein [Source:HGNC Symbol;Acc:HGNC:12404]
ENSCJAG00000035240	NOVEL	pseudogene	ENSCJAG00000035240	chromosome:C_jacchus3.2.1:3:1:190850796:1	10457414	10459352	R	<no descrition>
ENSCJAG00000034790	NOVEL	pseudogene	ENSCJAG00000034790	chromosome:C_jacchus3.2.1:3:1:190850796:1	8648996	8649425	D	<no descrition>
ENSCJAG00000005490	NOVEL	pseudogene	ENSCJAG00000005490	chromosome:C_jacchus3.2.1:3:1:190850796:1	8627967	8628436	D	<no descrition>
ENSCJAG00000009191	KNOWN_BY_PROJECTION	protein_coding	GGH	chromosome:C_jacchus3.2.1:16:1:96796970:1	15412451	15431061	R	gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) [Source:HGNC Symbol;Acc:HGNC:4248]
ENSCJAG00000017139	KNOWN_BY_PROJECTION	protein_coding	TEKT5	chromosome:C_jacchus3.2.1:12:1:121768101:1	11007174	11067676	R	tektin 5 [Source:HGNC Symbol;Acc:HGNC:26554]
ENSCJAG00000010993	KNOWN	protein_coding	HFE	chromosome:C_jacchus3.2.1:4:1:171630274:1	2337738	2348555	R	Hereditary hemochromatosis protein isoform 1 {ECO:0000313|EMBL:JAB04563.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044307}  [Source:UniProtKB/TrEMBL;Acc:F7GRH8]
ENSCJAG00000031602	NOVEL	protein_coding	ENSCJAG00000031602	chromosome:C_jacchus3.2.1:16:1:96796970:1	15266465	15267270	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047188}  [Source:UniProtKB/TrEMBL;Acc:F7ISS5]
ENSCJAG00000017151	NOVEL	pseudogene	ENSCJAG00000017151	chromosome:C_jacchus3.2.1:12:1:121768101:1	10881996	10882488	R	<no descrition>
ENSCJAG00000002105	NOVEL	protein_coding	ENSCJAG00000002105	scaffold:C_jacchus3.2.1:ACFV01184103.1:1:12409:1	10299	12407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003787}  [Source:UniProtKB/TrEMBL;Acc:H9KVR3]
ENSCJAG00000017153	KNOWN_BY_PROJECTION	protein_coding	ATF7IP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	10805169	10834199	D	activating transcription factor 7 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:20397]
ENSCJAG00000034411	NOVEL	protein_coding	ENSCJAG00000034411	scaffold:C_jacchus3.2.1:GL286563.1:1:14783:1	3351	4086	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048326}  [Source:UniProtKB/TrEMBL;Acc:H9KYB6]
ENSCJAG00000031795	NOVEL	protein_coding	ENSCJAG00000031795	scaffold:C_jacchus3.2.1:GL285020.1:1:44156:1	16697	19980	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049124}  [Source:UniProtKB/TrEMBL;Acc:H9KYD5]
ENSCJAG00000018100	KNOWN	protein_coding	SYT10	chromosome:C_jacchus3.2.1:9:1:124281992:1	33963025	34021321	D	Synaptotagmin-10 {ECO:0000313|EMBL:JAB19594.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033472}  [Source:UniProtKB/TrEMBL;Acc:F6QFF5]
ENSCJAG00000010294	KNOWN_BY_PROJECTION	protein_coding	ARSK	chromosome:C_jacchus3.2.1:2:1:204313951:1	112114593	112168505	R	arylsulfatase family, member K [Source:HGNC Symbol;Acc:HGNC:25239]
ENSCJAG00000011039	KNOWN	protein_coding	HIST1H2BD	chromosome:C_jacchus3.2.1:4:1:171630274:1	2181579	2388670	D	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7H6T6]
ENSCJAG00000017164	KNOWN	protein_coding	GRIN2A	chromosome:C_jacchus3.2.1:12:1:121768101:1	10104204	10319152	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031583}  [Source:UniProtKB/TrEMBL;Acc:F7IRL9]
ENSCJAG00000013852	NOVEL	pseudogene	ENSCJAG00000013852	chromosome:C_jacchus3.2.1:21:1:50472720:1	29858824	29860101	D	<no descrition>
ENSCJAG00000010252	KNOWN	protein_coding	RHOBTB3	chromosome:C_jacchus3.2.1:2:1:204313951:1	111930150	111990670	R	Rho-related BTB domain-containing protein 3 {ECO:0000313|EMBL:JAB08307.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018906}  [Source:UniProtKB/TrEMBL;Acc:F7H5H8]
ENSCJAG00000013817	KNOWN_BY_PROJECTION	protein_coding	GABPA	chromosome:C_jacchus3.2.1:21:1:50472720:1	29687604	29734037	D	GA binding protein transcription factor, alpha subunit 60kDa [Source:HGNC Symbol;Acc:HGNC:4071]
ENSCJAG00000013803	KNOWN_BY_PROJECTION	protein_coding	ATP5J	chromosome:C_jacchus3.2.1:21:1:50472720:1	29671854	29688239	R	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 [Source:HGNC Symbol;Acc:HGNC:847]
ENSCJAG00000010200	KNOWN_BY_PROJECTION	protein_coding	ELL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	111756592	111830772	D	elongation factor, RNA polymerase II, 2 [Source:HGNC Symbol;Acc:HGNC:17064]
ENSCJAG00000017287	KNOWN_BY_PROJECTION	protein_coding	PMM2	chromosome:C_jacchus3.2.1:12:1:121768101:1	9199707	9234193	D	phosphomannomutase 2 [Source:HGNC Symbol;Acc:HGNC:9115]
ENSCJAG00000013778	KNOWN_BY_PROJECTION	protein_coding	JAM2	chromosome:C_jacchus3.2.1:21:1:50472720:1	29594248	29669459	D	junctional adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:14686]
ENSCJAG00000032283	NOVEL	pseudogene	ENSCJAG00000032283	chromosome:C_jacchus3.2.1:16:1:96796970:1	13958636	13959353	D	<no descrition>
ENSCJAG00000009111	KNOWN_BY_PROJECTION	protein_coding	CLVS1	chromosome:C_jacchus3.2.1:16:1:96796970:1	13777825	13980197	D	clavesin 1 [Source:HGNC Symbol;Acc:HGNC:23139]
ENSCJAG00000013751	NOVEL	protein_coding	ENSCJAG00000013751	chromosome:C_jacchus3.2.1:21:1:50472720:1	29155891	29156858	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025275}  [Source:UniProtKB/TrEMBL;Acc:F6W1Y6]
ENSCJAG00000034612	NOVEL	protein_coding	ENSCJAG00000034612	chromosome:C_jacchus3.2.1:2:1:204313951:1	111454674	111455156	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046675}  [Source:UniProtKB/TrEMBL;Acc:F7IK56]
ENSCJAG00000013732	NOVEL	protein_coding	ENSCJAG00000013732	chromosome:C_jacchus3.2.1:21:1:50472720:1	27337186	27339739	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025248}  [Source:UniProtKB/TrEMBL;Acc:F6X947]
ENSCJAG00000005554	KNOWN_BY_PROJECTION	protein_coding	WWC2	chromosome:C_jacchus3.2.1:3:1:190850796:1	6148269	6273209	R	WW and C2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24148]
ENSCJAG00000033631	NOVEL	protein_coding	ENSCJAG00000033631	chromosome:C_jacchus3.2.1:21:1:50472720:1	26416376	26417162	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047874}  [Source:UniProtKB/TrEMBL;Acc:F7GRX0]
ENSCJAG00000035860	NOVEL	protein_coding	ENSCJAG00000035860	chromosome:C_jacchus3.2.1:4:1:171630274:1	2045245	2097030	R	<no descrition>
ENSCJAG00000013023	NOVEL	protein_coding	ENSCJAG00000013023	scaffold:C_jacchus3.2.1:GL285019.1:1:132469:1	47170	50519	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033676}  [Source:UniProtKB/TrEMBL;Acc:H9KXC9]
ENSCJAG00000031196	NOVEL	pseudogene	ENSCJAG00000031196	chromosome:C_jacchus3.2.1:3:1:190850796:1	6146742	6147652	D	<no descrition>
ENSCJAG00000003442	KNOWN_BY_PROJECTION	protein_coding	TMPRSS15	chromosome:C_jacchus3.2.1:21:1:50472720:1	22953796	23101035	R	transmembrane protease, serine 15 [Source:HGNC Symbol;Acc:HGNC:9490]
ENSCJAG00000033810	NOVEL	protein_coding	ENSCJAG00000033810	chromosome:C_jacchus3.2.1:21:1:50472720:1	24923680	24925857	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042936}  [Source:UniProtKB/TrEMBL;Acc:F6W6Q1]
ENSCJAG00000010166	KNOWN	protein_coding	PCSK1	chromosome:C_jacchus3.2.1:2:1:204313951:1	111298411	111342086	D	Neuroendocrine convertase 1 isoform 1 preproprotein {ECO:0000313|EMBL:JAB32070.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018769}  [Source:UniProtKB/TrEMBL;Acc:F7EBE4]
ENSCJAG00000011148	NOVEL	protein_coding	ENSCJAG00000011148	chromosome:C_jacchus3.2.1:4:1:171630274:1	2045074	2096871	R	<no descrition>
ENSCJAG00000003437	KNOWN_BY_PROJECTION	protein_coding	CHODL	chromosome:C_jacchus3.2.1:21:1:50472720:1	22937885	22951651	D	chondrolectin [Source:HGNC Symbol;Acc:HGNC:17807]
ENSCJAG00000023621	NOVEL	protein_coding	ENSCJAG00000023621	chromosome:C_jacchus3.2.1:4:1:171630274:1	2003475	2004897	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051572}  [Source:UniProtKB/TrEMBL;Acc:F6UWJ3]
ENSCJAG00000004433	NOVEL	pseudogene	ENSCJAG00000004433	chromosome:C_jacchus3.2.1:4:1:171630274:1	1997927	1998203	D	<no descrition>
ENSCJAG00000009025	KNOWN	protein_coding	CHD7	chromosome:C_jacchus3.2.1:16:1:96796970:1	13186491	13372551	D	Chromodomain-helicase-DNA-binding protein 7 {ECO:0000313|EMBL:JAB10304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016683}  [Source:UniProtKB/TrEMBL;Acc:F6VM65]
ENSCJAG00000005050	NOVEL	protein_coding	ENSCJAG00000005050	chromosome:C_jacchus3.2.1:4:1:171630274:1	1995508	1995966	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009202}  [Source:UniProtKB/TrEMBL;Acc:F7IDA6]
ENSCJAG00000014572	NOVEL	pseudogene	ENSCJAG00000014572	chromosome:C_jacchus3.2.1:4:1:171630274:1	1991075	1991366	R	<no descrition>
ENSCJAG00000011173	KNOWN	protein_coding	HMGN4	chromosome:C_jacchus3.2.1:4:1:171630274:1	1992505	2001290	R	High mobility group nucleosome-binding domain-containing protein 4 {ECO:0000313|EMBL:JAB06122.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020578}  [Source:UniProtKB/TrEMBL;Acc:F7G9N2]
ENSCJAG00000011174	KNOWN	protein_coding	ABT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	1945533	1947502	R	Activator of basal transcription 1 {ECO:0000313|EMBL:JAB03293.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020580}  [Source:UniProtKB/TrEMBL;Acc:F7G966]
ENSCJAG00000005586	NOVEL	protein_coding	ENSCJAG00000005586	chromosome:C_jacchus3.2.1:3:1:190850796:1	6144615	6145377	D	<no descrition>
ENSCJAG00000031308	NOVEL	pseudogene	ENSCJAG00000031308	chromosome:C_jacchus3.2.1:4:1:171630274:1	1834225	1834478	R	<no descrition>
ENSCJAG00000035210	NOVEL	pseudogene	ENSCJAG00000035210	chromosome:C_jacchus3.2.1:4:1:171630274:1	1829945	1830204	D	<no descrition>
ENSCJAG00000005588	NOVEL	protein_coding	ENSCJAG00000005588	chromosome:C_jacchus3.2.1:3:1:190850796:1	6089371	6090482	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010197}  [Source:UniProtKB/TrEMBL;Acc:F6X0D1]
ENSCJAG00000003434	KNOWN	protein_coding	C21ORF91	chromosome:C_jacchus3.2.1:21:1:50472720:1	22438213	22478023	R	Protein EURL homolog isoform 1 {ECO:0000313|EMBL:JAB04162.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006240}  [Source:UniProtKB/TrEMBL;Acc:F7H1A5]
ENSCJAG00000034699	NOVEL	protein_coding	ENSCJAG00000034699	chromosome:C_jacchus3.2.1:3:1:190850796:1	6064857	6065949	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047784}  [Source:UniProtKB/TrEMBL;Acc:F7E2U0]
ENSCJAG00000031430	NOVEL	protein_coding	ENSCJAG00000031430	scaffold:C_jacchus3.2.1:GL286433.1:1:11551:1	6147	6929	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003409}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ0]
ENSCJAG00000003431	NOVEL	protein_coding	ENSCJAG00000003431	chromosome:C_jacchus3.2.1:21:1:50472720:1	22314118	22314872	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006230}  [Source:UniProtKB/TrEMBL;Acc:F7H1H4]
ENSCJAG00000003406	KNOWN	protein_coding	BTG3	chromosome:C_jacchus3.2.1:21:1:50472720:1	22234918	22256318	R	Protein BTG3 isoform b {ECO:0000313|EMBL:JAB02753.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006218}  [Source:UniProtKB/TrEMBL;Acc:F7H6J9]
ENSCJAG00000009000	KNOWN	protein_coding	RAB2A	chromosome:C_jacchus3.2.1:16:1:96796970:1	13027905	13118835	D	Ras-related protein Rab-2A isoform a {ECO:0000313|EMBL:JAB09049.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016517}  [Source:UniProtKB/TrEMBL;Acc:F7CJ87]
ENSCJAG00000005610	KNOWN	protein_coding	RWDD4	chromosome:C_jacchus3.2.1:3:1:190850796:1	5793528	5814419	D	RWD domain-containing protein 4 {ECO:0000313|EMBL:JAB04597.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010244}  [Source:UniProtKB/TrEMBL;Acc:F6UNC8]
ENSCJAG00000018700	KNOWN_BY_PROJECTION	protein_coding	HIST1H2BH	chromosome:C_jacchus3.2.1:4:1:171630274:1	1077169	1121906	D	histone cluster 1, H2bh [Source:HGNC Symbol;Acc:HGNC:4755]
ENSCJAG00000022433	KNOWN	protein_coding	HIST4H4	chromosome:C_jacchus3.2.1:4:1:171630274:1	1067621	1100917	D	Histone H4 {ECO:0000256|RuleBase:RU000528}  [Source:UniProtKB/TrEMBL;Acc:F7FGL0]
ENSCJAG00000034488	NOVEL	protein_coding	ENSCJAG00000034488	chromosome:C_jacchus3.2.1:16:1:96796970:1	12438178	12440064	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025095}  [Source:UniProtKB/TrEMBL;Acc:F6XAQ9]
ENSCJAG00000018689	KNOWN_BY_PROJECTION	protein_coding	OR2B2	chromosome:C_jacchus3.2.1:4:1:171630274:1	1031618	1032824	D	olfactory receptor, family 2, subfamily B, member 2 [Source:HGNC Symbol;Acc:HGNC:13966]
ENSCJAG00000017961	KNOWN_BY_PROJECTION	protein_coding	KIF21A	chromosome:C_jacchus3.2.1:9:1:124281992:1	32240373	32394984	D	kinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]
ENSCJAG00000018687	KNOWN_BY_PROJECTION	protein_coding	ZNF165	chromosome:C_jacchus3.2.1:4:1:171630274:1	920615	929207	R	zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]
ENSCJAG00000008958	KNOWN	protein_coding	TOX	chromosome:C_jacchus3.2.1:16:1:96796970:1	11399794	11714513	R	Thymocyte selection-associated high mobility group box protein TOX {ECO:0000313|EMBL:JAB24412.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016404}  [Source:UniProtKB/TrEMBL;Acc:F6YNE7]
ENSCJAG00000018686	KNOWN	protein_coding	ZSCAN16	chromosome:C_jacchus3.2.1:4:1:171630274:1	888803	894541	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034706}; Zinc finger and SCAN domain-containing protein 16 {ECO:0000313|EMBL:JAB27156.1}  [Source:UniProtKB/TrEMBL;Acc:F7IFE6]
ENSCJAG00000018685	NOVEL	protein_coding	ENSCJAG00000018685	chromosome:C_jacchus3.2.1:4:1:171630274:1	881380	893464	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034703}  [Source:UniProtKB/TrEMBL;Acc:F7IFE9]
ENSCJAG00000005451	NOVEL	pseudogene	ENSCJAG00000005451	scaffold:C_jacchus3.2.1:ACFV01177321.1:1:25866:1	10430	11313	R	<no descrition>
ENSCJAG00000003327	KNOWN	protein_coding	USP25	chromosome:C_jacchus3.2.1:21:1:50472720:1	20447333	20589958	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7F5L2]
ENSCJAG00000017942	KNOWN	protein_coding	ABCD2	chromosome:C_jacchus3.2.1:9:1:124281992:1	32027506	32136191	D	ATP-binding cassette sub-family D member 2 {ECO:0000313|EMBL:JAB14675.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033145}  [Source:UniProtKB/TrEMBL;Acc:F6SKS4]
ENSCJAG00000018671	KNOWN	protein_coding	ZNF192	chromosome:C_jacchus3.2.1:4:1:171630274:1	830484	877337	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034701}; Zinc finger protein 192 {ECO:0000313|EMBL:JAB07395.1}  [Source:UniProtKB/TrEMBL;Acc:F7IFF1]
ENSCJAG00000018658	KNOWN	protein_coding	ZSCAN9	chromosome:C_jacchus3.2.1:4:1:171630274:1	796376	804855	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034672}  [Source:UniProtKB/TrEMBL;Acc:F7IMI8]
ENSCJAG00000018657	NOVEL	pseudogene	ENSCJAG00000018657	chromosome:C_jacchus3.2.1:4:1:171630274:1	783428	783889	D	<no descrition>
ENSCJAG00000003320	KNOWN	protein_coding	NRIP1	chromosome:C_jacchus3.2.1:21:1:50472720:1	19642360	19759661	R	Nuclear receptor-interacting protein 1 {ECO:0000313|EMBL:JAB40376.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006026}  [Source:UniProtKB/TrEMBL;Acc:F7H6V9]
ENSCJAG00000003323	NOVEL	pseudogene	ENSCJAG00000003323	chromosome:C_jacchus3.2.1:21:1:50472720:1	20368544	20368853	R	<no descrition>
ENSCJAG00000003304	KNOWN	protein_coding	SAMSN1	chromosome:C_jacchus3.2.1:21:1:50472720:1	19186844	19327566	R	SAM domain-containing protein SAMSN-1 isoform 2 {ECO:0000313|EMBL:JAB45199.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006019}  [Source:UniProtKB/TrEMBL;Acc:F7H6Z0]
ENSCJAG00000017192	KNOWN_BY_PROJECTION	protein_coding	USP7	chromosome:C_jacchus3.2.1:12:1:121768101:1	9196942	9338278	R	ubiquitin specific peptidase 7 (herpes virus-associated) [Source:HGNC Symbol;Acc:HGNC:12630]
ENSCJAG00000003284	KNOWN_BY_PROJECTION	protein_coding	HSPA13	chromosome:C_jacchus3.2.1:21:1:50472720:1	19054951	19065495	R	heat shock protein 70kDa family, member 13 [Source:HGNC Symbol;Acc:HGNC:11375]
ENSCJAG00000008834	KNOWN	protein_coding	NSMAF	chromosome:C_jacchus3.2.1:16:1:96796970:1	11159944	11247391	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048800}  [Source:UniProtKB/TrEMBL;Acc:F6TVS5]
ENSCJAG00000035220	NOVEL	protein_coding	ENSCJAG00000035220	chromosome:C_jacchus3.2.1:21:1:50472720:1	19043902	19048835	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005897}  [Source:UniProtKB/TrEMBL;Acc:F7IRA1]
ENSCJAG00000035313	NOVEL	protein_coding	ENSCJAG00000035313	chromosome:C_jacchus3.2.1:21:1:50472720:1	19016608	19026335	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051314}  [Source:UniProtKB/TrEMBL;Acc:F6ZJG5]
ENSCJAG00000003226	NOVEL	protein_coding	ENSCJAG00000003226	chromosome:C_jacchus3.2.1:21:1:50472720:1	18945777	19009532	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005952}  [Source:UniProtKB/TrEMBL;Acc:F7IC23]
ENSCJAG00000003218	KNOWN_BY_PROJECTION	protein_coding	RBM11	chromosome:C_jacchus3.2.1:21:1:50472720:1	18870705	18884417	D	RNA binding motif protein 11 [Source:HGNC Symbol;Acc:HGNC:9897]
ENSCJAG00000003201	KNOWN_BY_PROJECTION	protein_coding	LIPI	chromosome:C_jacchus3.2.1:21:1:50472720:1	18796824	18865993	R	lipase, member I [Source:HGNC Symbol;Acc:HGNC:18821]
ENSCJAG00000035231	NOVEL	protein_coding	ENSCJAG00000035231	chromosome:C_jacchus3.2.1:21:1:50472720:1	18776152	18777475	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050573}  [Source:UniProtKB/TrEMBL;Acc:F7E5M1]
ENSCJAG00000000141	NOVEL	protein_coding	ENSCJAG00000000141	chromosome:C_jacchus3.2.1:21:1:50472720:1	16252788	16253637	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000237}  [Source:UniProtKB/TrEMBL;Acc:F7GTD6]
ENSCJAG00000037847	KNOWN	protein_coding	TMEM186	chromosome:C_jacchus3.2.1:12:1:121768101:1	9196814	9199522	R	Transmembrane protein 186 {ECO:0000313|EMBL:JAB01886.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031813}  [Source:UniProtKB/TrEMBL;Acc:F7IJG3]
ENSCJAG00000000110	KNOWN_BY_PROJECTION	protein_coding	ROBO2	chromosome:C_jacchus3.2.1:21:1:50472720:1	15915853	16097004	R	roundabout, axon guidance receptor, homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:10250]
ENSCJAG00000017927	KNOWN_BY_PROJECTION	protein_coding	C12orf40	chromosome:C_jacchus3.2.1:9:1:124281992:1	31932024	32020732	R	chromosome 12 open reading frame 40 [Source:HGNC Symbol;Acc:HGNC:26846]
ENSCJAG00000034198	NOVEL	protein_coding	ENSCJAG00000034198	chromosome:C_jacchus3.2.1:21:1:50472720:1	15485235	15486919	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049001}  [Source:UniProtKB/TrEMBL;Acc:F6ZIZ1]
ENSCJAG00000008392	KNOWN_BY_PROJECTION	protein_coding	F13B	chromosome:C_jacchus3.2.1:18:1:47448759:1	47398991	47428065	R	coagulation factor XIII, B polypeptide [Source:HGNC Symbol;Acc:HGNC:3534]
ENSCJAG00000017922	KNOWN	protein_coding	SLC2A13	chromosome:C_jacchus3.2.1:9:1:124281992:1	31506286	31896086	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033084}  [Source:UniProtKB/TrEMBL;Acc:F6TIJ0]
ENSCJAG00000037347	KNOWN_BY_PROJECTION	protein_coding	CFHR5	chromosome:C_jacchus3.2.1:18:1:47448759:1	47359296	47386421	D	complement factor H-related 5 [Source:HGNC Symbol;Acc:HGNC:24668]
ENSCJAG00000017292	KNOWN	protein_coding	ABAT	chromosome:C_jacchus3.2.1:12:1:121768101:1	9072717	9187539	D	4-aminobutyrate aminotransferase, mitochondrial {ECO:0000313|EMBL:JAB08295.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009051}  [Source:UniProtKB/TrEMBL;Acc:F7I6F5]
ENSCJAG00000008697	KNOWN	protein_coding	SDCBP	chromosome:C_jacchus3.2.1:16:1:96796970:1	11128159	11159283	D	Syntenin-1 isoform 1 {ECO:0000313|EMBL:JAB08916.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016187}  [Source:UniProtKB/TrEMBL;Acc:F6ZQD6]
ENSCJAG00000000145	KNOWN_BY_PROJECTION	protein_coding	ROBO1	chromosome:C_jacchus3.2.1:21:1:50472720:1	14506222	15019555	D	roundabout, axon guidance receptor, homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:10249]
ENSCJAG00000008684	KNOWN_BY_PROJECTION	protein_coding	CYP7A1	chromosome:C_jacchus3.2.1:16:1:96796970:1	11079094	11088096	R	cytochrome P450, family 7, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2651]
ENSCJAG00000008666	KNOWN_BY_PROJECTION	protein_coding	UBXN2B	chromosome:C_jacchus3.2.1:16:1:96796970:1	11004161	11037417	D	UBX domain protein 2B [Source:HGNC Symbol;Acc:HGNC:27035]
ENSCJAG00000008657	KNOWN_BY_PROJECTION	protein_coding	FAM110B	chromosome:C_jacchus3.2.1:16:1:96796970:1	10593973	10740860	D	family with sequence similarity 110, member B [Source:HGNC Symbol;Acc:HGNC:28587]
ENSCJAG00000008655	NOVEL	protein_coding	ENSCJAG00000008655	chromosome:C_jacchus3.2.1:16:1:96796970:1	10580626	10582055	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015920}  [Source:UniProtKB/TrEMBL;Acc:F7E7R5]
ENSCJAG00000008652	NOVEL	pseudogene	ENSCJAG00000008652	chromosome:C_jacchus3.2.1:16:1:96796970:1	10250333	10251123	D	<no descrition>
ENSCJAG00000022622	NOVEL	protein_coding	ENSCJAG00000022622	chromosome:C_jacchus3.2.1:21:1:50472720:1	12173093	12178376	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043291}  [Source:UniProtKB/TrEMBL;Acc:F7I813]
ENSCJAG00000008415	KNOWN_BY_PROJECTION	protein_coding	CFH	chromosome:C_jacchus3.2.1:18:1:47448759:1	47259737	47342448	D	complement factor H [Source:HGNC Symbol;Acc:HGNC:4883]
ENSCJAG00000000191	KNOWN_BY_PROJECTION	protein_coding	GBE1	chromosome:C_jacchus3.2.1:21:1:50472720:1	12044245	12328689	D	glucan (1,4-alpha-), branching enzyme 1 [Source:HGNC Symbol;Acc:HGNC:4180]
ENSCJAG00000008610	NOVEL	protein_coding	ENSCJAG00000008610	chromosome:C_jacchus3.2.1:16:1:96796970:1	10107917	10145828	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015893}  [Source:UniProtKB/TrEMBL;Acc:F7G3I6]
ENSCJAG00000008906	NOVEL	protein_coding	ENSCJAG00000008906	chromosome:C_jacchus3.2.1:21:1:50472720:1	9576844	9577890	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016300}  [Source:UniProtKB/TrEMBL;Acc:F7CKY0]
ENSCJAG00000005616	KNOWN_BY_PROJECTION	protein_coding	TRAPPC11	chromosome:C_jacchus3.2.1:3:1:190850796:1	5736406	5793411	R	trafficking protein particle complex 11 [Source:HGNC Symbol;Acc:HGNC:25751]
ENSCJAG00000008885	KNOWN_BY_PROJECTION	protein_coding	CADM2	chromosome:C_jacchus3.2.1:21:1:50472720:1	8105942	8454948	R	cell adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:29849]
ENSCJAG00000016573	KNOWN	protein_coding	IMPAD1	chromosome:C_jacchus3.2.1:16:1:96796970:1	9880502	9911645	R	Inositol monophosphatase 3  [Source:UniProtKB/Swiss-Prot;Acc:F6Y5S8]
ENSCJAG00000008876	NOVEL	pseudogene	ENSCJAG00000008876	chromosome:C_jacchus3.2.1:21:1:50472720:1	7798413	7800385	D	<no descrition>
ENSCJAG00000016588	NOVEL	pseudogene	ENSCJAG00000016588	chromosome:C_jacchus3.2.1:16:1:96796970:1	9522049	9523654	R	<no descrition>
ENSCJAG00000032014	NOVEL	protein_coding	ENSCJAG00000032014	chromosome:C_jacchus3.2.1:21:1:50472720:1	7470746	7472503	D	Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}  [Source:UniProtKB/TrEMBL;Acc:F7HUJ6]
ENSCJAG00000008857	KNOWN_BY_PROJECTION	protein_coding	VGLL3	chromosome:C_jacchus3.2.1:21:1:50472720:1	7269631	7292211	D	vestigial-like family member 3 [Source:HGNC Symbol;Acc:HGNC:24327]
ENSCJAG00000008842	KNOWN_BY_PROJECTION	protein_coding	CHMP2B	chromosome:C_jacchus3.2.1:21:1:50472720:1	7012595	7024611	R	charged multivesicular body protein 2B [Source:HGNC Symbol;Acc:HGNC:24537]
ENSCJAG00000008469	KNOWN_BY_PROJECTION	protein_coding	KCNT2	chromosome:C_jacchus3.2.1:18:1:47448759:1	46845562	47222502	R	potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
ENSCJAG00000008810	KNOWN_BY_PROJECTION	protein_coding	POU1F1	chromosome:C_jacchus3.2.1:21:1:50472720:1	6990001	7007098	D	POU class 1 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9210]
ENSCJAG00000016597	KNOWN	protein_coding	PENK	chromosome:C_jacchus3.2.1:16:1:96796970:1	9329893	9335666	R	Proenkephalin-A preproprotein {ECO:0000313|EMBL:JAB14357.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030551}  [Source:UniProtKB/TrEMBL;Acc:F6WU13]
ENSCJAG00000022621	NOVEL	pseudogene	ENSCJAG00000022621	chromosome:C_jacchus3.2.1:21:1:50472720:1	6467870	6468913	R	<no descrition>
ENSCJAG00000008806	NOVEL	pseudogene	ENSCJAG00000008806	chromosome:C_jacchus3.2.1:21:1:50472720:1	6435115	6435593	D	<no descrition>
ENSCJAG00000008501	NOVEL	pseudogene	ENSCJAG00000008501	chromosome:C_jacchus3.2.1:18:1:47448759:1	46003734	46006249	R	<no descrition>
ENSCJAG00000008804	NOVEL	protein_coding	ENSCJAG00000008804	chromosome:C_jacchus3.2.1:21:1:50472720:1	6315350	6324714	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016151}  [Source:UniProtKB/TrEMBL;Acc:F7B8Q7]
ENSCJAG00000035194	NOVEL	pseudogene	ENSCJAG00000035194	chromosome:C_jacchus3.2.1:18:1:47448759:1	44676488	44677034	R	<no descrition>
ENSCJAG00000016607	NOVEL	protein_coding	ENSCJAG00000016607	chromosome:C_jacchus3.2.1:16:1:96796970:1	9253949	9289371	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030555}  [Source:UniProtKB/TrEMBL;Acc:F6WAN6]
ENSCJAG00000008799	NOVEL	protein_coding	ENSCJAG00000008799	chromosome:C_jacchus3.2.1:21:1:50472720:1	6308485	6311193	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016144}  [Source:UniProtKB/TrEMBL;Acc:F7B9P2]
ENSCJAG00000008559	KNOWN	protein_coding	B3GALT2	chromosome:C_jacchus3.2.1:18:1:47448759:1	44455358	44463222	R	Beta-1,3-galactosyltransferase 2 {ECO:0000313|EMBL:JAB18147.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015764}  [Source:UniProtKB/TrEMBL;Acc:F7DSY6]
ENSCJAG00000008790	KNOWN	protein_coding	CGGBP1	chromosome:C_jacchus3.2.1:21:1:50472720:1	6300520	6402231	D	CGG triplet repeat-binding protein 1 {ECO:0000313|EMBL:JAB08374.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042684}  [Source:UniProtKB/TrEMBL;Acc:F6Z5S4]
ENSCJAG00000008780	NOVEL	protein_coding	ENSCJAG00000008780	chromosome:C_jacchus3.2.1:21:1:50472720:1	6293738	6300445	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016121}  [Source:UniProtKB/TrEMBL;Acc:F7C6W1]
ENSCJAG00000016608	KNOWN	protein_coding	SDR16C5	chromosome:C_jacchus3.2.1:16:1:96796970:1	9172120	9191881	R	Epidermal retinol dehydrogenase 2 {ECO:0000313|EMBL:JAB04005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043306}  [Source:UniProtKB/TrEMBL;Acc:F7HYK1]
ENSCJAG00000008779	NOVEL	pseudogene	ENSCJAG00000008779	chromosome:C_jacchus3.2.1:21:1:50472720:1	6147968	6148854	R	<no descrition>
ENSCJAG00000005676	NOVEL	protein_coding	ENSCJAG00000005676	chromosome:C_jacchus3.2.1:3:1:190850796:1	5723772	5724683	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010425}  [Source:UniProtKB/TrEMBL;Acc:F7HWV7]
ENSCJAG00000031862	NOVEL	pseudogene	ENSCJAG00000031862	chromosome:C_jacchus3.2.1:3:1:190850796:1	5637986	5638734	D	<no descrition>
ENSCJAG00000017334	KNOWN	protein_coding	METTL22	chromosome:C_jacchus3.2.1:12:1:121768101:1	9017626	9040905	D	Methyltransferase-like protein 22 {ECO:0000313|EMBL:JAB10852.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031914}  [Source:UniProtKB/TrEMBL;Acc:F7I0J4]
ENSCJAG00000008692	KNOWN	protein_coding	EPHA3	chromosome:C_jacchus3.2.1:21:1:50472720:1	5026143	5413646	R	Ephrin type-A receptor 3 isoform a {ECO:0000313|EMBL:JAB30602.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016104}  [Source:UniProtKB/TrEMBL;Acc:F7CM77]
ENSCJAG00000008505	KNOWN	protein_coding	CDC73	chromosome:C_jacchus3.2.1:18:1:47448759:1	44401892	44516530	D	Parafibromin {ECO:0000313|EMBL:JAB06995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015760}  [Source:UniProtKB/TrEMBL;Acc:F7DT12]
ENSCJAG00000016614	KNOWN_BY_PROJECTION	protein_coding	CHCHD7	chromosome:C_jacchus3.2.1:16:1:96796970:1	9114481	9120502	D	coiled-coil-helix-coiled-coil-helix domain containing 7 [Source:HGNC Symbol;Acc:HGNC:28314]
ENSCJAG00000017346	KNOWN_BY_PROJECTION	protein_coding	TMEM114	chromosome:C_jacchus3.2.1:12:1:121768101:1	8962225	8987826	R	transmembrane protein 114 [Source:HGNC Symbol;Acc:HGNC:33227]
ENSCJAG00000034862	NOVEL	pseudogene	ENSCJAG00000034862	chromosome:C_jacchus3.2.1:12:1:121768101:1	8661605	8662071	D	<no descrition>
ENSCJAG00000017349	NOVEL	protein_coding	ENSCJAG00000017349	chromosome:C_jacchus3.2.1:12:1:121768101:1	8643994	8647179	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031934}  [Source:UniProtKB/TrEMBL;Acc:F7HY48]
ENSCJAG00000008562	KNOWN_BY_PROJECTION	protein_coding	GLRX2	chromosome:C_jacchus3.2.1:18:1:47448759:1	44375141	44384802	R	glutaredoxin 2 [Source:HGNC Symbol;Acc:HGNC:16065]
ENSCJAG00000005690	KNOWN_BY_PROJECTION	protein_coding	STOX2	chromosome:C_jacchus3.2.1:3:1:190850796:1	5421134	5536079	R	storkhead box 2 [Source:HGNC Symbol;Acc:HGNC:25450]
ENSCJAG00000008687	NOVEL	pseudogene	ENSCJAG00000008687	chromosome:C_jacchus3.2.1:21:1:50472720:1	4660797	4662023	R	<no descrition>
ENSCJAG00000016621	KNOWN_BY_PROJECTION	protein_coding	PLAG1	chromosome:C_jacchus3.2.1:16:1:96796970:1	9067665	9113994	R	pleiomorphic adenoma gene 1 [Source:HGNC Symbol;Acc:HGNC:9045]
ENSCJAG00000017351	KNOWN	protein_coding	RBFOX1	chromosome:C_jacchus3.2.1:12:1:121768101:1	7607564	7945349	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031960}  [Source:UniProtKB/TrEMBL;Acc:F7HL41]
ENSCJAG00000021945	NOVEL	protein_coding	ENSCJAG00000021945	chromosome:C_jacchus3.2.1:12:1:121768101:1	7397584	7398766	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040629}  [Source:UniProtKB/TrEMBL;Acc:F7IBU1]
ENSCJAG00000020020	NOVEL	pseudogene	ENSCJAG00000020020	chromosome:C_jacchus3.2.1:12:1:121768101:1	6956267	6956605	D	<no descrition>
ENSCJAG00000016631	KNOWN_BY_PROJECTION	protein_coding	RPS20	chromosome:C_jacchus3.2.1:16:1:96796970:1	8986782	8993668	R	ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
ENSCJAG00000033474	NOVEL	pseudogene	ENSCJAG00000033474	chromosome:C_jacchus3.2.1:12:1:121768101:1	5204774	5204896	D	<no descrition>
ENSCJAG00000008648	KNOWN_BY_PROJECTION	protein_coding	PROS1	chromosome:C_jacchus3.2.1:21:1:50472720:1	4307985	4380489	D	protein S (alpha) [Source:HGNC Symbol;Acc:HGNC:9456]
ENSCJAG00000005711	KNOWN_BY_PROJECTION	protein_coding	ENPP6	chromosome:C_jacchus3.2.1:3:1:190850796:1	5209030	5338887	D	ectonucleotide pyrophosphatase/phosphodiesterase 6 [Source:HGNC Symbol;Acc:HGNC:23409]
ENSCJAG00000022620	KNOWN_BY_PROJECTION	protein_coding	STX19	chromosome:C_jacchus3.2.1:21:1:50472720:1	4223485	4244633	D	syntaxin 19 [Source:HGNC Symbol;Acc:HGNC:19300]
ENSCJAG00000005731	KNOWN	protein_coding	IRF2	chromosome:C_jacchus3.2.1:3:1:190850796:1	4999149	5041503	D	Interferon regulatory factor {ECO:0000256|PIRNR:PIRNR038196}  [Source:UniProtKB/TrEMBL;Acc:F7II01]
ENSCJAG00000008566	KNOWN	protein_coding	TROVE2	chromosome:C_jacchus3.2.1:18:1:47448759:1	44340489	44369716	D	60 kDa SS-A/Ro ribonucleoprotein isoform 2 {ECO:0000313|EMBL:JAB04747.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049325}  [Source:UniProtKB/TrEMBL;Acc:F6ZHA8]
ENSCJAG00000008622	KNOWN	protein_coding	ARL13B	chromosome:C_jacchus3.2.1:21:1:50472720:1	4197857	4281615	R	ADP-ribosylation factor-like protein 13B isoform 1 {ECO:0000313|EMBL:JAB04165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015904}  [Source:UniProtKB/TrEMBL;Acc:F7EJY6]
ENSCJAG00000020005	NOVEL	protein_coding	ENSCJAG00000020005	chromosome:C_jacchus3.2.1:12:1:121768101:1	5199002	5212424	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048857}  [Source:UniProtKB/TrEMBL;Acc:F6SNH0]
ENSCJAG00000008606	KNOWN_BY_PROJECTION	protein_coding	NSUN3	chromosome:C_jacchus3.2.1:21:1:50472720:1	4128611	4189796	R	NOP2/Sun domain family, member 3 [Source:HGNC Symbol;Acc:HGNC:26208]
ENSCJAG00000033659	NOVEL	pseudogene	ENSCJAG00000033659	chromosome:C_jacchus3.2.1:12:1:121768101:1	5189688	5190132	R	<no descrition>
ENSCJAG00000008604	NOVEL	protein_coding	ENSCJAG00000008604	chromosome:C_jacchus3.2.1:21:1:50472720:1	3289889	3291306	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015840}  [Source:UniProtKB/TrEMBL;Acc:F7GNW1]
ENSCJAG00000033560	NOVEL	pseudogene	ENSCJAG00000033560	chromosome:C_jacchus3.2.1:21:1:50472720:1	2531113	2531444	D	<no descrition>
ENSCJAG00000008553	KNOWN_BY_PROJECTION	protein_coding	EPHA6	chromosome:C_jacchus3.2.1:21:1:50472720:1	506150	1512877	R	EPH receptor A6 [Source:HGNC Symbol;Acc:HGNC:19296]
ENSCJAG00000005740	KNOWN_BY_PROJECTION	protein_coding	CASP3	chromosome:C_jacchus3.2.1:3:1:190850796:1	4776486	4797547	D	caspase 3, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:1504]
ENSCJAG00000016635	KNOWN	protein_coding	LYN	chromosome:C_jacchus3.2.1:16:1:96796970:1	8818380	8949278	D	Tyrosine-protein kinase Lyn isoform A {ECO:0000313|EMBL:JAB04259.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030644}  [Source:UniProtKB/TrEMBL;Acc:F7B7A6]
ENSCJAG00000008542	KNOWN_BY_PROJECTION	protein_coding	ARL6	chromosome:C_jacchus3.2.1:21:1:50472720:1	416194	491043	R	ADP-ribosylation factor-like 6 [Source:HGNC Symbol;Acc:HGNC:13210]
ENSCJAG00000008539	NOVEL	protein_coding	ENSCJAG00000008539	chromosome:C_jacchus3.2.1:21:1:50472720:1	302049	317100	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015731}  [Source:UniProtKB/TrEMBL;Acc:F7E8H7]
ENSCJAG00000016657	KNOWN_BY_PROJECTION	protein_coding	TGS1	chromosome:C_jacchus3.2.1:16:1:96796970:1	8698924	8753887	D	trimethylguanosine synthase 1 [Source:HGNC Symbol;Acc:HGNC:17843]
ENSCJAG00000008517	KNOWN_BY_PROJECTION	protein_coding	CRYBG3	chromosome:C_jacchus3.2.1:21:1:50472720:1	226434	300423	R	beta-gamma crystallin domain containing 3 [Source:HGNC Symbol;Acc:HGNC:34427]
ENSCJAG00000008496	KNOWN_BY_PROJECTION	protein_coding	MINA	chromosome:C_jacchus3.2.1:21:1:50472720:1	202274	226717	D	MYC induced nuclear antigen [Source:HGNC Symbol;Acc:HGNC:19441]
ENSCJAG00000008491	KNOWN_BY_PROJECTION	protein_coding	GABRR3	chromosome:C_jacchus3.2.1:21:1:50472720:1	123467	183786	D	gamma-aminobutyric acid (GABA) A receptor, rho 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:17969]
ENSCJAG00000008488	NOVEL	pseudogene	ENSCJAG00000008488	chromosome:C_jacchus3.2.1:21:1:50472720:1	39162	39660	D	<no descrition>
ENSCJAG00000031815	NOVEL	protein_coding	ENSCJAG00000031815	chromosome:C_jacchus3.2.1:21:1:50472720:1	28575	30440	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045024}  [Source:UniProtKB/TrEMBL;Acc:F6U515]
ENSCJAG00000008485	NOVEL	protein_coding	ENSCJAG00000008485	chromosome:C_jacchus3.2.1:21:1:50472720:1	14847	16020	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015621}  [Source:UniProtKB/TrEMBL;Acc:F7H4P8]
ENSCJAG00000016672	KNOWN	protein_coding	TMEM68	chromosome:C_jacchus3.2.1:16:1:96796970:1	8657221	8699100	R	Transmembrane protein 68 {ECO:0000313|EMBL:JAB05742.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030691}  [Source:UniProtKB/TrEMBL;Acc:F6Z6I7]
ENSCJAG00000016679	KNOWN_BY_PROJECTION	protein_coding	XKR4	chromosome:C_jacchus3.2.1:16:1:96796970:1	8086489	8521489	D	XK, Kell blood group complex subunit-related family, member 4 [Source:HGNC Symbol;Acc:HGNC:29394]
ENSCJAG00000016690	NOVEL	pseudogene	ENSCJAG00000016690	chromosome:C_jacchus3.2.1:16:1:96796970:1	8435467	8435821	R	<no descrition>
ENSCJAG00000032650	NOVEL	protein_coding	ENSCJAG00000032650	scaffold:C_jacchus3.2.1:ACFV01201038.1:1:2278:1	1665	2109	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043013}  [Source:UniProtKB/TrEMBL;Acc:H9KY04]
ENSCJAG00000017840	KNOWN_BY_PROJECTION	protein_coding	LRRK2	chromosome:C_jacchus3.2.1:9:1:124281992:1	31234689	31388843	R	leucine-rich repeat kinase 2 [Source:HGNC Symbol;Acc:HGNC:18618]
ENSCJAG00000002298	NOVEL	pseudogene	ENSCJAG00000002298	scaffold:C_jacchus3.2.1:GL286316.1:1:36525:1	22554	23050	D	<no descrition>
ENSCJAG00000032186	NOVEL	protein_coding	ENSCJAG00000032186	scaffold:C_jacchus3.2.1:GL287091.1:1:5704:1	2637	3101	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045334}  [Source:UniProtKB/TrEMBL;Acc:H9KY44]
ENSCJAG00000014228	NOVEL	pseudogene	ENSCJAG00000014228	scaffold:C_jacchus3.2.1:ACFV01179703.1:1:20609:1	5306	6629	D	<no descrition>
ENSCJAG00000016337	NOVEL	pseudogene	ENSCJAG00000016337	scaffold:C_jacchus3.2.1:GL287156.1:1:5726:1	4382	4778	D	<no descrition>
ENSCJAG00000001042	NOVEL	protein_coding	ENSCJAG00000001042	scaffold:C_jacchus3.2.1:GL285097.1:1:55775:1	41551	44812	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001778}  [Source:UniProtKB/TrEMBL;Acc:H9KVN8]
ENSCJAG00000001032	NOVEL	protein_coding	ENSCJAG00000001032	scaffold:C_jacchus3.2.1:GL285097.1:1:55775:1	40074	55767	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001775}  [Source:UniProtKB/TrEMBL;Acc:H9KVN7]
ENSCJAG00000031427	NOVEL	protein_coding	ENSCJAG00000031427	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	424189	424408	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004272}  [Source:UniProtKB/TrEMBL;Acc:H9KVT1]
ENSCJAG00000035445	NOVEL	protein_coding	ENSCJAG00000035445	scaffold:C_jacchus3.2.1:GL285672.1:1:20162:1	11551	14384	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035165}  [Source:UniProtKB/TrEMBL;Acc:H9KXH1]
ENSCJAG00000034165	NOVEL	protein_coding	ENSCJAG00000034165	chromosome:C_jacchus3.2.1:9:1:124281992:1	31153970	31185501	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049032}  [Source:UniProtKB/TrEMBL;Acc:F6XYX4]
ENSCJAG00000034421	NOVEL	protein_coding	ENSCJAG00000034421	scaffold:C_jacchus3.2.1:GL286389.1:1:15150:1	12194	14168	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047146}  [Source:UniProtKB/TrEMBL;Acc:H9KY83]
ENSCJAG00000037656	NOVEL	protein_coding	ENSCJAG00000037656	scaffold:C_jacchus3.2.1:GL285568.1:1:57714:1	19509	20447	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052132}  [Source:UniProtKB/TrEMBL;Acc:H9KYL5]
ENSCJAG00000008620	KNOWN_BY_PROJECTION	protein_coding	UCHL5	chromosome:C_jacchus3.2.1:18:1:47448759:1	44292331	44340924	R	ubiquitin carboxyl-terminal hydrolase L5 [Source:HGNC Symbol;Acc:HGNC:19678]
ENSCJAG00000032945	NOVEL	pseudogene	ENSCJAG00000032945	scaffold:C_jacchus3.2.1:ACFV01193811.1:1:2427:1	2115	2427	R	<no descrition>
ENSCJAG00000014254	NOVEL	pseudogene	ENSCJAG00000014254	scaffold:C_jacchus3.2.1:GL287525.1:1:5771:1	3307	5743	R	<no descrition>
ENSCJAG00000034792	NOVEL	protein_coding	ENSCJAG00000034792	scaffold:C_jacchus3.2.1:GL287717.1:1:16335:1	10606	11295	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018089}  [Source:UniProtKB/TrEMBL;Acc:H9KWM2]
ENSCJAG00000035377	NOVEL	pseudogene	ENSCJAG00000035377	scaffold:C_jacchus3.2.1:GL288442.1:1:10432:1	8686	9483	D	<no descrition>
ENSCJAG00000005747	KNOWN_BY_PROJECTION	protein_coding	PRIMPOL	chromosome:C_jacchus3.2.1:3:1:190850796:1	4729005	4773978	R	primase and polymerase (DNA-directed) [Source:HGNC Symbol;Acc:HGNC:26575]
ENSCJAG00000008297	NOVEL	protein_coding	ENSCJAG00000008297	scaffold:C_jacchus3.2.1:GL285226.1:1:19201:1	312	1897	D	Perilipin {ECO:0000256|PIRNR:PIRNR036881}  [Source:UniProtKB/TrEMBL;Acc:H9KYM4]
ENSCJAG00000012687	NOVEL	pseudogene	ENSCJAG00000012687	scaffold:C_jacchus3.2.1:ACFV01201239.1:1:2113:1	1	669	D	<no descrition>
ENSCJAG00000017460	NOVEL	protein_coding	ENSCJAG00000017460	scaffold:C_jacchus3.2.1:GL285175.1:1:48030:1	18382	20854	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032190}  [Source:UniProtKB/TrEMBL;Acc:H9KXB4]
ENSCJAG00000034419	NOVEL	protein_coding	ENSCJAG00000034419	scaffold:C_jacchus3.2.1:GL288990.1:1:4346:1	3221	3811	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019833}  [Source:UniProtKB/TrEMBL;Acc:H9KWP8]
ENSCJAG00000032724	NOVEL	pseudogene	ENSCJAG00000032724	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	136619	136790	R	<no descrition>
ENSCJAG00000010668	KNOWN	protein_coding	ENSCJAG00000010668	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	135942	149666	D	Macrophage migration inhibitory factor {ECO:0000313|EMBL:JAB36221.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019663}  [Source:UniProtKB/TrEMBL;Acc:H9KWP1]
ENSCJAG00000017830	NOVEL	protein_coding	ENSCJAG00000017830	chromosome:C_jacchus3.2.1:9:1:124281992:1	31031264	31068389	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032900}  [Source:UniProtKB/TrEMBL;Acc:F7H628]
ENSCJAG00000002966	KNOWN_BY_PROJECTION	protein_coding	GCGR	scaffold:C_jacchus3.2.1:GL287821.1:1:70426:1	50865	53782	R	glucagon receptor [Source:HGNC Symbol;Acc:HGNC:4192]
ENSCJAG00000002959	KNOWN	protein_coding	FAM195B	scaffold:C_jacchus3.2.1:GL287821.1:1:70426:1	41740	45570	D	Protein FAM195B {ECO:0000313|EMBL:JAB19396.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005357}  [Source:UniProtKB/TrEMBL;Acc:H9KVX3]
ENSCJAG00000016064	NOVEL	protein_coding	ENSCJAG00000016064	scaffold:C_jacchus3.2.1:GL285478.1:1:10975:1	1888	2349	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029559}  [Source:UniProtKB/TrEMBL;Acc:H9KX64]
ENSCJAG00000010571	NOVEL	protein_coding	ENSCJAG00000010571	scaffold:C_jacchus3.2.1:GL285570.1:1:18745:1	9331	10532	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019504}  [Source:UniProtKB/TrEMBL;Acc:H9KWN8]
ENSCJAG00000009014	NOVEL	protein_coding	ENSCJAG00000009014	scaffold:C_jacchus3.2.1:ACFV01177660.1:1:22780:1	12220	22462	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016502}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ5]
ENSCJAG00000020001	KNOWN	protein_coding	ENSCJAG00000020001	chromosome:C_jacchus3.2.1:12:1:121768101:1	5181393	5198128	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051642}  [Source:UniProtKB/TrEMBL;Acc:F6ZGV3]
ENSCJAG00000034560	NOVEL	protein_coding	ENSCJAG00000034560	scaffold:C_jacchus3.2.1:ACFV01177660.1:1:22780:1	4205	8270	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009786}  [Source:UniProtKB/TrEMBL;Acc:H9KW67]
ENSCJAG00000033329	NOVEL	protein_coding	ENSCJAG00000033329	scaffold:C_jacchus3.2.1:GL286406.1:1:12374:1	10908	11376	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051971}  [Source:UniProtKB/TrEMBL;Acc:H9KYK7]
ENSCJAG00000016695	KNOWN_BY_PROJECTION	protein_coding	RP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	7560967	7669912	D	retinitis pigmentosa 1 (autosomal dominant) [Source:HGNC Symbol;Acc:HGNC:10263]
ENSCJAG00000013004	NOVEL	pseudogene	ENSCJAG00000013004	scaffold:C_jacchus3.2.1:ACFV01198051.1:1:2040:1	216	954	R	<no descrition>
ENSCJAG00000004646	NOVEL	pseudogene	ENSCJAG00000004646	scaffold:C_jacchus3.2.1:GL286344.1:1:14317:1	12902	14078	D	<no descrition>
ENSCJAG00000008236	NOVEL	pseudogene	ENSCJAG00000008236	chromosome:C_jacchus3.2.1:16:1:96796970:1	7497644	7498568	R	<no descrition>
ENSCJAG00000032430	NOVEL	protein_coding	ENSCJAG00000032430	chromosome:C_jacchus3.2.1:18:1:47448759:1	44190696	44192030	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005584}  [Source:UniProtKB/TrEMBL;Acc:F7ICB8]
ENSCJAG00000011364	KNOWN	protein_coding	NAT8	scaffold:C_jacchus3.2.1:GL285673.1:1:51854:1	21752	23733	R	Putative N-acetyltransferase 8 {ECO:0000313|EMBL:JAB05448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020902}  [Source:UniProtKB/TrEMBL;Acc:H9KWU0]
ENSCJAG00000008667	NOVEL	protein_coding	ENSCJAG00000008667	chromosome:C_jacchus3.2.1:18:1:47448759:1	44252660	44254903	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015956}  [Source:UniProtKB/TrEMBL;Acc:F7DS74]
ENSCJAG00000016718	NOVEL	protein_coding	ENSCJAG00000016718	chromosome:C_jacchus3.2.1:16:1:96796970:1	7385996	7387635	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030753}  [Source:UniProtKB/TrEMBL;Acc:F6W8Y5]
ENSCJAG00000016710	KNOWN	protein_coding	SOX17	chromosome:C_jacchus3.2.1:16:1:96796970:1	7411900	7414827	D	Transcription factor SOX-17 {ECO:0000313|EMBL:JAB10894.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030751}  [Source:UniProtKB/TrEMBL;Acc:F6W913]
ENSCJAG00000015173	NOVEL	protein_coding	ENSCJAG00000015173	scaffold:C_jacchus3.2.1:GL286223.1:1:132061:1	57366	64642	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028029}  [Source:UniProtKB/TrEMBL;Acc:H9KX42]
ENSCJAG00000008680	KNOWN	protein_coding	RGS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	44087527	44090715	D	Regulator of G-protein signaling 2 {ECO:0000313|EMBL:JAB07950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015985}  [Source:UniProtKB/TrEMBL;Acc:F7HJN9]
ENSCJAG00000008465	KNOWN_BY_PROJECTION	protein_coding	CCDC24	scaffold:C_jacchus3.2.1:GL285273.1:1:13526:1	10368	13452	D	coiled-coil domain containing 24 [Source:HGNC Symbol;Acc:HGNC:28688]
ENSCJAG00000034263	NOVEL	protein_coding	ENSCJAG00000034263	scaffold:C_jacchus3.2.1:GL286148.1:1:12434:1	9642	10763	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050943}  [Source:UniProtKB/TrEMBL;Acc:H9KYI1]
ENSCJAG00000017809	KNOWN_BY_PROJECTION	protein_coding	CNTN1	chromosome:C_jacchus3.2.1:9:1:124281992:1	30520281	30640997	R	contactin 1 [Source:HGNC Symbol;Acc:HGNC:2171]
ENSCJAG00000016719	KNOWN	protein_coding	MRPL15	chromosome:C_jacchus3.2.1:16:1:96796970:1	7083044	7090848	D	39S ribosomal protein L15, mitochondrial {ECO:0000313|EMBL:JAB37159.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030768}  [Source:UniProtKB/TrEMBL;Acc:F6VPC6]
ENSCJAG00000034396	NOVEL	protein_coding	ENSCJAG00000034396	scaffold:C_jacchus3.2.1:GL289544.1:1:10529:1	2685	3989	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035646}  [Source:UniProtKB/TrEMBL;Acc:H9KXI1]
ENSCJAG00000016727	NOVEL	pseudogene	ENSCJAG00000016727	chromosome:C_jacchus3.2.1:16:1:96796970:1	7060187	7060825	D	<no descrition>
ENSCJAG00000004280	NOVEL	protein_coding	ENSCJAG00000004280	scaffold:C_jacchus3.2.1:GL288264.1:1:21817:1	3236	4128	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052266}  [Source:UniProtKB/TrEMBL;Acc:H9KYM2]
ENSCJAG00000008699	KNOWN_BY_PROJECTION	protein_coding	RGS13	chromosome:C_jacchus3.2.1:18:1:47448759:1	43923557	43950167	D	regulator of G-protein signaling 13 [Source:HGNC Symbol;Acc:HGNC:9995]
ENSCJAG00000032004	NOVEL	protein_coding	ENSCJAG00000032004	scaffold:C_jacchus3.2.1:ACFV01181575.1:1:14899:1	3148	11819	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042047}  [Source:UniProtKB/TrEMBL;Acc:H9KXY4]
ENSCJAG00000019991	KNOWN_BY_PROJECTION	protein_coding	C16orf89	chromosome:C_jacchus3.2.1:12:1:121768101:1	5148000	5173967	R	chromosome 16 open reading frame 89 [Source:HGNC Symbol;Acc:HGNC:28687]
ENSCJAG00000008730	KNOWN_BY_PROJECTION	protein_coding	RGS21	chromosome:C_jacchus3.2.1:18:1:47448759:1	43637329	43654065	D	regulator of G-protein signaling 21 [Source:HGNC Symbol;Acc:HGNC:26839]
ENSCJAG00000008708	KNOWN	protein_coding	RGS1	chromosome:C_jacchus3.2.1:18:1:47448759:1	43860593	43864906	D	Regulator of G-protein signaling 1 {ECO:0000313|EMBL:JAB18907.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016025}  [Source:UniProtKB/TrEMBL;Acc:F6Y6A3]
ENSCJAG00000015161	NOVEL	protein_coding	ENSCJAG00000015161	scaffold:C_jacchus3.2.1:GL286223.1:1:132061:1	65044	69146	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043669}  [Source:UniProtKB/TrEMBL;Acc:H9KY15]
ENSCJAG00000008733	KNOWN_BY_PROJECTION	protein_coding	RGS18	chromosome:C_jacchus3.2.1:18:1:47448759:1	43458243	43482455	D	regulator of G-protein signaling 18 [Source:HGNC Symbol;Acc:HGNC:14261]
ENSCJAG00000033902	NOVEL	protein_coding	ENSCJAG00000033902	chromosome:C_jacchus3.2.1:18:1:47448759:1	42563294	42564084	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043346}  [Source:UniProtKB/TrEMBL;Acc:F7IRV5]
ENSCJAG00000017792	KNOWN_BY_PROJECTION	protein_coding	PDZRN4	chromosome:C_jacchus3.2.1:9:1:124281992:1	29933820	30069341	R	PDZ domain containing ring finger 4 [Source:HGNC Symbol;Acc:HGNC:30552]
ENSCJAG00000015801	NOVEL	pseudogene	ENSCJAG00000015801	chromosome:C_jacchus3.2.1:18:1:47448759:1	42491693	42492612	D	<no descrition>
ENSCJAG00000033978	NOVEL	protein_coding	ENSCJAG00000033978	chromosome:C_jacchus3.2.1:18:1:47448759:1	41390329	41391409	R	<no descrition>
ENSCJAG00000011935	NOVEL	protein_coding	ENSCJAG00000011935	scaffold:C_jacchus3.2.1:GL285787.1:1:43974:1	16695	19281	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021911}  [Source:UniProtKB/TrEMBL;Acc:H9KWV3]
ENSCJAG00000020510	NOVEL	pseudogene	ENSCJAG00000020510	scaffold:C_jacchus3.2.1:GL286436.1:1:399530:1	239245	240362	D	<no descrition>
ENSCJAG00000032046	NOVEL	protein_coding	ENSCJAG00000032046	scaffold:C_jacchus3.2.1:GL285780.1:1:116926:1	50366	52710	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049299}  [Source:UniProtKB/TrEMBL;Acc:H9KYD8]
ENSCJAG00000014484	KNOWN_BY_PROJECTION	protein_coding	DHRSX	scaffold:C_jacchus3.2.1:GL286052.1:1:156781:1	91289	101722	R	dehydrogenase/reductase (SDR family) X-linked [Source:HGNC Symbol;Acc:HGNC:18399]
ENSCJAG00000021017	NOVEL	protein_coding	ENSCJAG00000021017	scaffold:C_jacchus3.2.1:GL286478.1:1:107563:1	8320	10458	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043178}  [Source:UniProtKB/TrEMBL;Acc:H9KY08]
ENSCJAG00000019998	KNOWN	protein_coding	NAGPA	chromosome:C_jacchus3.2.1:12:1:121768101:1	5127199	5138109	R	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase {ECO:0000313|EMBL:JAB10193.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037203}  [Source:UniProtKB/TrEMBL;Acc:F6XXP4]
ENSCJAG00000011562	KNOWN	protein_coding	LYPLA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	7006540	7043553	R	Acyl-protein thioesterase 1 {ECO:0000313|EMBL:JAB33048.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021256}  [Source:UniProtKB/TrEMBL;Acc:F6R2S9]
ENSCJAG00000031463	NOVEL	pseudogene	ENSCJAG00000031463	scaffold:C_jacchus3.2.1:GL286478.1:1:107563:1	1	839	D	<no descrition>
ENSCJAG00000010704	KNOWN_BY_PROJECTION	protein_coding	SMARCB1	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	88844	99345	D	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:HGNC Symbol;Acc:HGNC:11103]
ENSCJAG00000002718	NOVEL	protein_coding	ENSCJAG00000002718	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1336667	1339815	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004929}  [Source:UniProtKB/TrEMBL;Acc:H9KVV6]
ENSCJAG00000017773	KNOWN	protein_coding	GXYLT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	29367077	29425692	D	Glucoside xylosyltransferase 1 isoform 2 {ECO:0000313|EMBL:JAB47467.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032785}  [Source:UniProtKB/TrEMBL;Acc:F7FW66]
ENSCJAG00000033794	NOVEL	protein_coding	ENSCJAG00000033794	scaffold:C_jacchus3.2.1:GL285780.1:1:116926:1	82529	87700	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045738}  [Source:UniProtKB/TrEMBL;Acc:H9KY53]
ENSCJAG00000031346	NOVEL	protein_coding	ENSCJAG00000031346	chromosome:C_jacchus3.2.1:16:1:96796970:1	6978986	6982100	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049051}  [Source:UniProtKB/TrEMBL;Acc:F6XA50]
ENSCJAG00000017532	NOVEL	protein_coding	ENSCJAG00000017532	scaffold:C_jacchus3.2.1:ACFV01178114.1:1:35736:1	2633	32591	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032313}  [Source:UniProtKB/TrEMBL;Acc:H9KXB9]
ENSCJAG00000020717	NOVEL	pseudogene	ENSCJAG00000020717	scaffold:C_jacchus3.2.1:GL284966.1:1:68498:1	30861	31792	R	<no descrition>
ENSCJAG00000002862	NOVEL	protein_coding	ENSCJAG00000002862	scaffold:C_jacchus3.2.1:GL285921.1:1:74814:1	38007	43971	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005225}  [Source:UniProtKB/TrEMBL;Acc:H9KVW6]
ENSCJAG00000004691	KNOWN_BY_PROJECTION	protein_coding	LMX1A	chromosome:C_jacchus3.2.1:18:1:47448759:1	40568616	40729916	D	LIM homeobox transcription factor 1, alpha [Source:HGNC Symbol;Acc:HGNC:6653]
ENSCJAG00000019966	NOVEL	pseudogene	ENSCJAG00000019966	scaffold:C_jacchus3.2.1:GL284994.1:1:102506:1	34995	35739	R	<no descrition>
ENSCJAG00000000761	NOVEL	protein_coding	ENSCJAG00000000761	scaffold:C_jacchus3.2.1:ACFV01179580.1:1:18205:1	2121	6349	R	<no descrition>
ENSCJAG00000019964	NOVEL	protein_coding	ENSCJAG00000019964	scaffold:C_jacchus3.2.1:GL284994.1:1:102506:1	32919	33612	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037136}  [Source:UniProtKB/TrEMBL;Acc:H9KXJ9]
ENSCJAG00000013006	NOVEL	protein_coding	ENSCJAG00000013006	scaffold:C_jacchus3.2.1:GL286474.1:1:162968:1	139876	147156	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023895}  [Source:UniProtKB/TrEMBL;Acc:H9KWY2]
ENSCJAG00000020703	NOVEL	protein_coding	ENSCJAG00000020703	scaffold:C_jacchus3.2.1:GL284966.1:1:68498:1	10652	58111	D	<no descrition>
ENSCJAG00000004656	KNOWN	protein_coding	RXRG	chromosome:C_jacchus3.2.1:18:1:47448759:1	40477744	40522165	D	Retinoic acid receptor RXR-gamma isoform a {ECO:0000313|EMBL:JAB13628.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008496}  [Source:UniProtKB/TrEMBL;Acc:F7I5X4]
ENSCJAG00000006556	NOVEL	protein_coding	ENSCJAG00000006556	scaffold:C_jacchus3.2.1:GL286836.1:1:8239:1	2714	6548	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012110}  [Source:UniProtKB/TrEMBL;Acc:H9KWC1]
ENSCJAG00000035713	NOVEL	protein_coding	ENSCJAG00000035713	scaffold:C_jacchus3.2.1:GL289911.1:1:11098:1	5125	5931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052135}  [Source:UniProtKB/TrEMBL;Acc:H9KYL7]
ENSCJAG00000034640	NOVEL	pseudogene	ENSCJAG00000034640	scaffold:C_jacchus3.2.1:ACFV01179976.1:1:17354:1	6937	7319	R	<no descrition>
ENSCJAG00000033127	NOVEL	protein_coding	ENSCJAG00000033127	scaffold:C_jacchus3.2.1:ACFV01183485.1:1:12153:1	737	6565	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025171}  [Source:UniProtKB/TrEMBL;Acc:H9KX09]
ENSCJAG00000000884	NOVEL	protein_coding	ENSCJAG00000000884	scaffold:C_jacchus3.2.1:GL288399.1:1:21346:1	4744	12512	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001505}  [Source:UniProtKB/TrEMBL;Acc:H9KVN0]
ENSCJAG00000035123	NOVEL	pseudogene	ENSCJAG00000035123	scaffold:C_jacchus3.2.1:ACFV01186207.1:1:8003:1	1658	2541	R	<no descrition>
ENSCJAG00000021705	KNOWN_BY_PROJECTION	protein_coding	BMS1	scaffold:C_jacchus3.2.1:ACFV01179931.1:1:15828:1	622	12655	D	BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]
ENSCJAG00000017488	KNOWN_BY_PROJECTION	protein_coding	AXIN2	scaffold:C_jacchus3.2.1:GL285110.1:1:75753:1	34303	59177	R	axin 2 [Source:HGNC Symbol;Acc:HGNC:904]
ENSCJAG00000017749	KNOWN	protein_coding	ZCRB1	chromosome:C_jacchus3.2.1:9:1:124281992:1	29171457	29186883	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032747}; Zinc finger CCHC-type and RNA-binding motif-containing protein 1 {ECO:0000313|EMBL:JAB01914.1}  [Source:UniProtKB/TrEMBL;Acc:F7GQP1]
ENSCJAG00000017748	NOVEL	protein_coding	ENSCJAG00000017748	chromosome:C_jacchus3.2.1:9:1:124281992:1	29124802	29126448	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032727}  [Source:UniProtKB/TrEMBL;Acc:F7H0X3]
ENSCJAG00000005867	KNOWN	protein_coding	KIAA1430	chromosome:C_jacchus3.2.1:3:1:190850796:1	4284209	4305254	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010770}  [Source:UniProtKB/TrEMBL;Acc:F7IAT2]
ENSCJAG00000010833	KNOWN_BY_PROJECTION	protein_coding	C22orf15	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	40374	43326	D	chromosome 22 open reading frame 15 [Source:HGNC Symbol;Acc:HGNC:15558]
ENSCJAG00000032737	NOVEL	protein_coding	ENSCJAG00000032737	scaffold:C_jacchus3.2.1:GL285907.1:1:79621:1	46441	47453	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047726}  [Source:UniProtKB/TrEMBL;Acc:H9KYA3]
ENSCJAG00000010824	NOVEL	protein_coding	ENSCJAG00000010824	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	43301	45116	R	<no descrition>
ENSCJAG00000003009	NOVEL	protein_coding	ENSCJAG00000003009	scaffold:C_jacchus3.2.1:GL286089.1:1:85985:1	42843	45808	D	<no descrition>
ENSCJAG00000015762	NOVEL	pseudogene	ENSCJAG00000015762	scaffold:C_jacchus3.2.1:ACFV01185165.1:1:10403:1	2	643	R	<no descrition>
ENSCJAG00000004026	NOVEL	pseudogene	ENSCJAG00000004026	scaffold:C_jacchus3.2.1:GL290141.1:1:8431:1	6515	8382	R	<no descrition>
ENSCJAG00000031639	NOVEL	protein_coding	ENSCJAG00000031639	scaffold:C_jacchus3.2.1:GL286060.1:1:70286:1	55597	63906	D	<no descrition>
ENSCJAG00000022506	NOVEL	pseudogene	ENSCJAG00000022506	scaffold:C_jacchus3.2.1:ACFV01196113.1:1:2176:1	849	1675	R	<no descrition>
ENSCJAG00000005932	NOVEL	protein_coding	ENSCJAG00000005932	chromosome:C_jacchus3.2.1:3:1:190850796:1	4075594	4078456	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010906}  [Source:UniProtKB/TrEMBL;Acc:F7IJZ0]
ENSCJAG00000007638	KNOWN_BY_PROJECTION	protein_coding	TRIM61	scaffold:C_jacchus3.2.1:GL284994.1:1:102506:1	19009	20879	D	tripartite motif containing 61 [Source:HGNC Symbol;Acc:HGNC:24339]
ENSCJAG00000032244	NOVEL	protein_coding	ENSCJAG00000032244	chromosome:C_jacchus3.2.1:16:1:96796970:1	6483960	6486301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050786}  [Source:UniProtKB/TrEMBL;Acc:F7HDG3]
ENSCJAG00000014518	NOVEL	pseudogene	ENSCJAG00000014518	chromosome:C_jacchus3.2.1:16:1:96796970:1	6460946	6461227	R	<no descrition>
ENSCJAG00000014512	NOVEL	pseudogene	ENSCJAG00000014512	chromosome:C_jacchus3.2.1:16:1:96796970:1	6478750	6479240	D	<no descrition>
ENSCJAG00000005817	NOVEL	protein_coding	ENSCJAG00000005817	scaffold:C_jacchus3.2.1:GL285143.1:1:17029:1	2114	5374	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010687}  [Source:UniProtKB/TrEMBL;Acc:H9KWA6]
ENSCJAG00000008154	NOVEL	protein_coding	ENSCJAG00000008154	scaffold:C_jacchus3.2.1:GL285923.1:1:140007:1	61534	69632	D	<no descrition>
ENSCJAG00000019945	KNOWN	protein_coding	UBN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	4938506	4973703	D	Ubinuclein-1 {ECO:0000313|EMBL:JAB07352.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037121}  [Source:UniProtKB/TrEMBL;Acc:F7CG91]
ENSCJAG00000022831	NOVEL	protein_coding	ENSCJAG00000022831	scaffold:C_jacchus3.2.1:GL285512.1:1:140942:1	34780	36750	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KXU8]
ENSCJAG00000007818	KNOWN_BY_PROJECTION	protein_coding	SPRYD7	scaffold:C_jacchus3.2.1:GL284710.1:1:67226:1	35449	41066	R	SPRY domain containing 7 [Source:HGNC Symbol;Acc:HGNC:14297]
ENSCJAG00000000752	NOVEL	protein_coding	ENSCJAG00000000752	scaffold:C_jacchus3.2.1:GL286231.1:1:82185:1	6948	8423	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001282}  [Source:UniProtKB/TrEMBL;Acc:H9KVM3]
ENSCJAG00000001814	NOVEL	protein_coding	ENSCJAG00000001814	scaffold:C_jacchus3.2.1:ACFV01192270.1:1:4068:1	2757	3640	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003244}  [Source:UniProtKB/TrEMBL;Acc:H9KVP9]
ENSCJAG00000003708	NOVEL	protein_coding	ENSCJAG00000003708	scaffold:C_jacchus3.2.1:GL285176.1:1:76252:1	63412	72132	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006727}  [Source:UniProtKB/TrEMBL;Acc:H9KW21]
ENSCJAG00000036686	NOVEL	pseudogene	ENSCJAG00000036686	chromosome:C_jacchus3.2.1:12:1:121768101:1	4895589	4897166	R	<no descrition>
ENSCJAG00000001811	NOVEL	protein_coding	ENSCJAG00000001811	scaffold:C_jacchus3.2.1:ACFV01192270.1:1:4068:1	1275	1745	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003239}  [Source:UniProtKB/TrEMBL;Acc:H9KVP8]
ENSCJAG00000000439	NOVEL	protein_coding	ENSCJAG00000000439	scaffold:C_jacchus3.2.1:GL285496.1:1:85696:1	56868	58109	R	<no descrition>
ENSCJAG00000018874	NOVEL	protein_coding	ENSCJAG00000018874	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1287241	1291289	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035050}  [Source:UniProtKB/TrEMBL;Acc:H9KXG7]
ENSCJAG00000000436	NOVEL	pseudogene	ENSCJAG00000000436	scaffold:C_jacchus3.2.1:GL285496.1:1:85696:1	66434	67898	D	<no descrition>
ENSCJAG00000005943	KNOWN_BY_PROJECTION	protein_coding	UFSP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	4012865	4060092	D	UFM1-specific peptidase 2 [Source:HGNC Symbol;Acc:HGNC:25640]
ENSCJAG00000004523	KNOWN	protein_coding	UCK2	chromosome:C_jacchus3.2.1:18:1:47448759:1	40027981	40115302	R	Uridine-cytidine kinase {ECO:0000256|RuleBase:RU003825}  [Source:UniProtKB/TrEMBL;Acc:F7IAY5]
ENSCJAG00000000955	NOVEL	protein_coding	ENSCJAG00000000955	scaffold:C_jacchus3.2.1:ACFV01176061.1:1:18443:1	13116	14033	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001625}  [Source:UniProtKB/TrEMBL;Acc:H9KVN4]
ENSCJAG00000004520	NOVEL	pseudogene	ENSCJAG00000004520	chromosome:C_jacchus3.2.1:18:1:47448759:1	39935528	39936355	D	<no descrition>
ENSCJAG00000004511	KNOWN	protein_coding	FAM78B	chromosome:C_jacchus3.2.1:18:1:47448759:1	39789326	39900904	D	Protein FAM78B {ECO:0000313|EMBL:JAB04232.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008173}  [Source:UniProtKB/TrEMBL;Acc:F7ISB1]
ENSCJAG00000034343	NOVEL	protein_coding	ENSCJAG00000034343	chromosome:C_jacchus3.2.1:18:1:47448759:1	39746755	39750949	R	<no descrition>
ENSCJAG00000000287	NOVEL	protein_coding	ENSCJAG00000000287	scaffold:C_jacchus3.2.1:ACFV01199050.1:1:2712:1	1115	2710	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052157}  [Source:UniProtKB/TrEMBL;Acc:H9KYL9]
ENSCJAG00000017375	KNOWN	protein_coding	RNF43	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	615091	619038	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047704}  [Source:UniProtKB/TrEMBL;Acc:H9KYA1]
ENSCJAG00000014530	KNOWN_BY_PROJECTION	protein_coding	RB1CC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	5559122	5662710	R	RB1-inducible coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:15574]
ENSCJAG00000032467	NOVEL	protein_coding	ENSCJAG00000032467	scaffold:C_jacchus3.2.1:GL284713.1:1:23410:1	973	2316	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047756}  [Source:UniProtKB/TrEMBL;Acc:H9KYA5]
ENSCJAG00000007544	KNOWN_BY_PROJECTION	protein_coding	FSIP2	scaffold:C_jacchus3.2.1:GL285180.1:1:46086:1	3777	42692	R	fibrous sheath interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:21675]
ENSCJAG00000014625	KNOWN_BY_PROJECTION	protein_coding	FAM150A	chromosome:C_jacchus3.2.1:16:1:96796970:1	5473437	5505793	R	family with sequence similarity 150, member A [Source:HGNC Symbol;Acc:HGNC:33775]
ENSCJAG00000019820	KNOWN_BY_PROJECTION	protein_coding	EIF4H	scaffold:C_jacchus3.2.1:GL284842.1:1:159601:1	16591	21619	R	eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:HGNC:12741]
ENSCJAG00000006221	NOVEL	protein_coding	ENSCJAG00000006221	scaffold:C_jacchus3.2.1:ACFV01196426.1:1:2627:1	574	1157	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011451}  [Source:UniProtKB/TrEMBL;Acc:H9KWB4]
ENSCJAG00000004491	NOVEL	protein_coding	ENSCJAG00000004491	chromosome:C_jacchus3.2.1:18:1:47448759:1	39729418	39733076	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008162}  [Source:UniProtKB/TrEMBL;Acc:F7ISF2]
ENSCJAG00000010682	KNOWN_BY_PROJECTION	protein_coding	DERL3	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	106663	112273	R	derlin 3 [Source:HGNC Symbol;Acc:HGNC:14236]
ENSCJAG00000004483	NOVEL	protein_coding	ENSCJAG00000004483	chromosome:C_jacchus3.2.1:18:1:47448759:1	39639205	39726010	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008127}  [Source:UniProtKB/TrEMBL;Acc:F7HUB4]
ENSCJAG00000033914	KNOWN	protein_coding	POGK	chromosome:C_jacchus3.2.1:18:1:47448759:1	39371118	39385826	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051678}  [Source:UniProtKB/TrEMBL;Acc:F6YGF4]
ENSCJAG00000016014	NOVEL	pseudogene	ENSCJAG00000016014	chromosome:C_jacchus3.2.1:18:1:47448759:1	39365180	39366446	R	<no descrition>
ENSCJAG00000013795	NOVEL	protein_coding	ENSCJAG00000013795	scaffold:C_jacchus3.2.1:ACFV01180152.1:1:16720:1	12362	13839	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025361}  [Source:UniProtKB/TrEMBL;Acc:H9KX16]
ENSCJAG00000034372	NOVEL	protein_coding	ENSCJAG00000034372	scaffold:C_jacchus3.2.1:ACFV01197231.1:1:3801:1	2508	2955	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043107}  [Source:UniProtKB/TrEMBL;Acc:H9KY06]
ENSCJAG00000010677	NOVEL	protein_coding	ENSCJAG00000010677	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	124043	125130	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019670}  [Source:UniProtKB/TrEMBL;Acc:H9KWP2]
ENSCJAG00000016018	KNOWN	protein_coding	TADA1	chromosome:C_jacchus3.2.1:18:1:47448759:1	39343815	39363157	D	Transcriptional adapter 1 {ECO:0000313|EMBL:JAB02295.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029479}  [Source:UniProtKB/TrEMBL;Acc:F7IP68]
ENSCJAG00000034610	NOVEL	protein_coding	ENSCJAG00000034610	scaffold:C_jacchus3.2.1:GL288446.1:1:16956:1	847	2946	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028305}  [Source:UniProtKB/TrEMBL;Acc:H9KX46]
ENSCJAG00000017721	NOVEL	pseudogene	ENSCJAG00000017721	chromosome:C_jacchus3.2.1:9:1:124281992:1	28912487	28913283	D	<no descrition>
ENSCJAG00000004073	NOVEL	protein_coding	ENSCJAG00000004073	scaffold:C_jacchus3.2.1:GL285978.1:1:26801:1	136	748	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007399}  [Source:UniProtKB/TrEMBL;Acc:H9KW36]
ENSCJAG00000005778	KNOWN_BY_PROJECTION	protein_coding	TM6SF2	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	27303	30655	R	transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
ENSCJAG00000012300	KNOWN_BY_PROJECTION	protein_coding	PRKRIR	scaffold:C_jacchus3.2.1:ACFV01191943.1:1:2639:1	353	2637	D	protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) [Source:HGNC Symbol;Acc:HGNC:9440]
ENSCJAG00000003825	NOVEL	pseudogene	ENSCJAG00000003825	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	54066	55361	R	<no descrition>
ENSCJAG00000031518	KNOWN	protein_coding	CAJA-F4	scaffold:C_jacchus3.2.1:GL285063.1:1:14952:1	2994	5036	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038311}  [Source:UniProtKB/TrEMBL;Acc:H9KXL8]
ENSCJAG00000003820	NOVEL	protein_coding	ENSCJAG00000003820	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	39586	40267	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006928}  [Source:UniProtKB/TrEMBL;Acc:H9KW26]
ENSCJAG00000019912	KNOWN	protein_coding	GLYR1	chromosome:C_jacchus3.2.1:12:1:121768101:1	4895589	4937899	R	Putative oxidoreductase GLYR1 {ECO:0000313|EMBL:JAB35762.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037085}  [Source:UniProtKB/TrEMBL;Acc:F6X9E8]
ENSCJAG00000032313	NOVEL	protein_coding	ENSCJAG00000032313	scaffold:C_jacchus3.2.1:GL285101.1:1:151588:1	119685	122150	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051960}  [Source:UniProtKB/TrEMBL;Acc:H9KYK6]
ENSCJAG00000004697	NOVEL	protein_coding	ENSCJAG00000004697	scaffold:C_jacchus3.2.1:ACFV01186039.1:1:9533:1	4398	5207	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008515}  [Source:UniProtKB/TrEMBL;Acc:H9KW46]
ENSCJAG00000014630	KNOWN_BY_PROJECTION	protein_coding	ST18	chromosome:C_jacchus3.2.1:16:1:96796970:1	5037228	5351209	R	suppression of tumorigenicity 18, zinc finger [Source:HGNC Symbol;Acc:HGNC:18695]
ENSCJAG00000019901	KNOWN_BY_PROJECTION	protein_coding	ROGDI	chromosome:C_jacchus3.2.1:12:1:121768101:1	4889122	4894989	R	rogdi homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29478]
ENSCJAG00000017695	KNOWN	protein_coding	PRICKLE1	chromosome:C_jacchus3.2.1:9:1:124281992:1	28902144	29027953	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032654}  [Source:UniProtKB/TrEMBL;Acc:F7DI93]
ENSCJAG00000017174	KNOWN_BY_PROJECTION	protein_coding	GPA33	chromosome:C_jacchus3.2.1:18:1:47448759:1	39138113	39175925	D	glycoprotein A33 (transmembrane) [Source:HGNC Symbol;Acc:HGNC:4445]
ENSCJAG00000019856	NOVEL	pseudogene	ENSCJAG00000019856	scaffold:C_jacchus3.2.1:GL286126.1:1:78495:1	69498	70608	D	<no descrition>
ENSCJAG00000035069	NOVEL	pseudogene	ENSCJAG00000035069	scaffold:C_jacchus3.2.1:GL286268.1:1:47238:1	21487	21997	R	<no descrition>
ENSCJAG00000014657	KNOWN_BY_PROJECTION	protein_coding	PCMTD1	chromosome:C_jacchus3.2.1:16:1:96796970:1	4711677	4805495	R	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30483]
ENSCJAG00000021528	KNOWN_BY_PROJECTION	protein_coding	EPS8L1	scaffold:C_jacchus3.2.1:GL285922.1:1:138250:1	78819	88033	D	EPS8-like 1 [Source:HGNC Symbol;Acc:HGNC:21295]
ENSCJAG00000017165	KNOWN_BY_PROJECTION	protein_coding	DUSP27	chromosome:C_jacchus3.2.1:18:1:47448759:1	39094569	39134408	R	dual specificity phosphatase 27 (putative) [Source:HGNC Symbol;Acc:HGNC:25034]
ENSCJAG00000019885	KNOWN	protein_coding	ZNF500	chromosome:C_jacchus3.2.1:12:1:121768101:1	4847602	4862962	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036971}; Zinc finger protein 500 {ECO:0000313|EMBL:JAB15123.1}  [Source:UniProtKB/TrEMBL;Acc:F6Q7P6]
ENSCJAG00000011146	NOVEL	protein_coding	ENSCJAG00000011146	scaffold:C_jacchus3.2.1:GL284852.1:1:101615:1	66050	66911	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020542}  [Source:UniProtKB/TrEMBL;Acc:H9KWS2]
ENSCJAG00000019283	NOVEL	protein_coding	ENSCJAG00000019283	scaffold:C_jacchus3.2.1:ACFV01158669.1:1:119076:1	92044	117096	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035792}  [Source:UniProtKB/TrEMBL;Acc:H9KXI4]
ENSCJAG00000013448	KNOWN	protein_coding	PUS7L	chromosome:C_jacchus3.2.1:9:1:124281992:1	27550652	27587797	D	Pseudouridylate synthase 7 homolog-like protein isoform a {ECO:0000313|EMBL:JAB10807.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024710}  [Source:UniProtKB/TrEMBL;Acc:F6S2V2]
ENSCJAG00000010435	KNOWN_BY_PROJECTION	protein_coding	FAM20C	scaffold:C_jacchus3.2.1:GL286500.1:1:136373:1	118027	130344	R	family with sequence similarity 20, member C [Source:HGNC Symbol;Acc:HGNC:22140]
ENSCJAG00000035878	NOVEL	protein_coding	ENSCJAG00000035878	chromosome:C_jacchus3.2.1:16:1:96796970:1	951000	955533	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052139}  [Source:UniProtKB/TrEMBL;Acc:F7I0E9]
ENSCJAG00000007007	NOVEL	protein_coding	ENSCJAG00000007007	scaffold:C_jacchus3.2.1:GL286620.1:1:16115:1	11275	14011	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012970}  [Source:UniProtKB/TrEMBL;Acc:H9KWC8]
ENSCJAG00000036904	NOVEL	protein_coding	ENSCJAG00000036904	chromosome:C_jacchus3.2.1:16:1:96796970:1	948386	948679	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052305}  [Source:UniProtKB/TrEMBL;Acc:F7HXT2]
ENSCJAG00000008591	NOVEL	protein_coding	ENSCJAG00000008591	chromosome:C_jacchus3.2.1:16:1:96796970:1	922413	922919	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052419}  [Source:UniProtKB/TrEMBL;Acc:F7I9K2]
ENSCJAG00000004407	NOVEL	pseudogene	ENSCJAG00000004407	scaffold:C_jacchus3.2.1:GL284922.1:1:37237:1	29423	30238	R	<no descrition>
ENSCJAG00000033033	NOVEL	pseudogene	ENSCJAG00000033033	scaffold:C_jacchus3.2.1:GL289200.1:1:10130:1	1551	1810	R	<no descrition>
ENSCJAG00000007742	NOVEL	pseudogene	ENSCJAG00000007742	scaffold:C_jacchus3.2.1:GL285389.1:1:18935:1	16893	18182	D	<no descrition>
ENSCJAG00000032182	KNOWN	protein_coding	UBE2V2	chromosome:C_jacchus3.2.1:16:1:96796970:1	881864	929472	D	Ubiquitin-conjugating enzyme E2 variant 2 {ECO:0000313|EMBL:JAB03373.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049252}  [Source:UniProtKB/TrEMBL;Acc:F6UWU7]
ENSCJAG00000019840	KNOWN_BY_PROJECTION	protein_coding	UBALD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	4698832	4704539	R	UBA-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
ENSCJAG00000021527	KNOWN_BY_PROJECTION	protein_coding	PPP1R12C	scaffold:C_jacchus3.2.1:GL285922.1:1:138250:1	90268	101637	R	protein phosphatase 1, regulatory subunit 12C [Source:HGNC Symbol;Acc:HGNC:14947]
ENSCJAG00000017048	KNOWN_BY_PROJECTION	protein_coding	CD247	chromosome:C_jacchus3.2.1:18:1:47448759:1	38719285	38805206	D	CD247 molecule [Source:HGNC Symbol;Acc:HGNC:1677]
ENSCJAG00000017047	KNOWN	protein_coding	CREG1	chromosome:C_jacchus3.2.1:18:1:47448759:1	38681732	38694430	D	Protein CREG1 {ECO:0000313|EMBL:JAB11651.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031330}  [Source:UniProtKB/TrEMBL;Acc:F7HWA6]
ENSCJAG00000017035	KNOWN	protein_coding	RCSD1	chromosome:C_jacchus3.2.1:18:1:47448759:1	38565098	38642016	R	CapZ-interacting protein {ECO:0000313|EMBL:JAB08447.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031325}  [Source:UniProtKB/TrEMBL;Acc:F7HYL9]
ENSCJAG00000020508	NOVEL	pseudogene	ENSCJAG00000020508	scaffold:C_jacchus3.2.1:GL286436.1:1:399530:1	282332	283003	D	<no descrition>
ENSCJAG00000021249	NOVEL	protein_coding	ENSCJAG00000021249	scaffold:C_jacchus3.2.1:GL284841.1:1:31842:1	15988	18036	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039552}  [Source:UniProtKB/TrEMBL;Acc:H9KXM6]
ENSCJAG00000003726	NOVEL	protein_coding	ENSCJAG00000003726	scaffold:C_jacchus3.2.1:GL286232.1:1:81572:1	74633	75821	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006744}  [Source:UniProtKB/TrEMBL;Acc:H9KW25]
ENSCJAG00000003723	NOVEL	protein_coding	ENSCJAG00000003723	scaffold:C_jacchus3.2.1:GL286232.1:1:81572:1	67981	69241	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006741}  [Source:UniProtKB/TrEMBL;Acc:H9KW24]
ENSCJAG00000003492	KNOWN_BY_PROJECTION	protein_coding	ZNF578	scaffold:C_jacchus3.2.1:GL285920.1:1:70291:1	10459	12404	D	zinc finger protein 578 [Source:HGNC Symbol;Acc:HGNC:26449]
ENSCJAG00000020018	NOVEL	protein_coding	ENSCJAG00000020018	scaffold:C_jacchus3.2.1:GL285672.1:1:20162:1	4520	5743	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038155}  [Source:UniProtKB/TrEMBL;Acc:H9KXL7]
ENSCJAG00000000350	NOVEL	protein_coding	ENSCJAG00000000350	scaffold:C_jacchus3.2.1:GL285008.1:1:46170:1	42095	44071	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000583}  [Source:UniProtKB/TrEMBL;Acc:H9KVK5]
ENSCJAG00000012156	NOVEL	pseudogene	ENSCJAG00000012156	scaffold:C_jacchus3.2.1:ACFV01198220.1:1:2609:1	1084	1942	R	<no descrition>
ENSCJAG00000004922	NOVEL	protein_coding	ENSCJAG00000004922	scaffold:C_jacchus3.2.1:ACFV01201673.1:1:2046:1	195	1590	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008982}  [Source:UniProtKB/TrEMBL;Acc:H9KW51]
ENSCJAG00000013526	KNOWN_BY_PROJECTION	protein_coding	MCM4	chromosome:C_jacchus3.2.1:16:1:96796970:1	845525	864348	D	minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]
ENSCJAG00000034030	NOVEL	protein_coding	ENSCJAG00000034030	scaffold:C_jacchus3.2.1:ACFV01196511.1:1:2427:1	464	1497	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046881}  [Source:UniProtKB/TrEMBL;Acc:H9KY79]
ENSCJAG00000010450	NOVEL	protein_coding	ENSCJAG00000010450	scaffold:C_jacchus3.2.1:ACFV01195898.1:1:3604:1	2022	2946	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019275}  [Source:UniProtKB/TrEMBL;Acc:H9KWN6]
ENSCJAG00000006015	KNOWN_BY_PROJECTION	protein_coding	SORBS2	chromosome:C_jacchus3.2.1:3:1:190850796:1	3462122	3866438	D	sorbin and SH3 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24098]
ENSCJAG00000031184	NOVEL	protein_coding	ENSCJAG00000031184	scaffold:C_jacchus3.2.1:GL286695.1:1:25034:1	20029	21397	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043518}  [Source:UniProtKB/TrEMBL;Acc:H9KY13]
ENSCJAG00000016999	KNOWN_BY_PROJECTION	protein_coding	ADCY10	chromosome:C_jacchus3.2.1:18:1:47448759:1	38380736	38471525	D	adenylate cyclase 10 (soluble) [Source:HGNC Symbol;Acc:HGNC:21285]
ENSCJAG00000018083	NOVEL	protein_coding	ENSCJAG00000018083	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	33475	34750	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:H9KXC5]
ENSCJAG00000002425	NOVEL	protein_coding	ENSCJAG00000002425	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	637893	661931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004422}  [Source:UniProtKB/TrEMBL;Acc:H9KVU1]
ENSCJAG00000035329	NOVEL	protein_coding	ENSCJAG00000035329	scaffold:C_jacchus3.2.1:ACFV01189995.1:1:7572:1	2211	3702	D	<no descrition>
ENSCJAG00000007803	NOVEL	protein_coding	ENSCJAG00000007803	scaffold:C_jacchus3.2.1:ACFV01183277.1:1:12449:1	1797	10619	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014497}  [Source:UniProtKB/TrEMBL;Acc:H9KWG4]
ENSCJAG00000006607	NOVEL	pseudogene	ENSCJAG00000006607	scaffold:C_jacchus3.2.1:GL286153.1:1:5909:1	3195	3663	R	<no descrition>
ENSCJAG00000032202	NOVEL	protein_coding	ENSCJAG00000032202	scaffold:C_jacchus3.2.1:GL285458.1:1:10869:1	1050	1494	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044808}  [Source:UniProtKB/TrEMBL;Acc:H9KY33]
ENSCJAG00000019151	NOVEL	protein_coding	ENSCJAG00000019151	scaffold:C_jacchus3.2.1:GL285136.1:1:61368:1	947	6271	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035547}  [Source:UniProtKB/TrEMBL;Acc:H9KXH7]
ENSCJAG00000031492	NOVEL	protein_coding	ENSCJAG00000031492	scaffold:C_jacchus3.2.1:GL286117.1:1:15989:1	12499	13820	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048629}  [Source:UniProtKB/TrEMBL;Acc:H9KYC7]
ENSCJAG00000006201	KNOWN_BY_PROJECTION	protein_coding	MAGEE1	scaffold:C_jacchus3.2.1:GL286244.1:1:100511:1	56505	60267	D	melanoma antigen family E, 1 [Source:HGNC Symbol;Acc:HGNC:24934]
ENSCJAG00000000885	NOVEL	protein_coding	ENSCJAG00000000885	scaffold:C_jacchus3.2.1:GL285298.1:1:36172:1	24595	28624	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001503}  [Source:UniProtKB/TrEMBL;Acc:H9KVM9]
ENSCJAG00000019149	NOVEL	protein_coding	ENSCJAG00000019149	scaffold:C_jacchus3.2.1:GL285136.1:1:61368:1	7830	8618	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052105}  [Source:UniProtKB/TrEMBL;Acc:H9KYL2]
ENSCJAG00000033921	NOVEL	protein_coding	ENSCJAG00000033921	scaffold:C_jacchus3.2.1:GL285571.1:1:22717:1	12396	15495	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049659}  [Source:UniProtKB/TrEMBL;Acc:H9KYF1]
ENSCJAG00000034503	NOVEL	protein_coding	ENSCJAG00000034503	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	295427	297199	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010350}  [Source:UniProtKB/TrEMBL;Acc:H9KW92]
ENSCJAG00000016889	KNOWN	protein_coding	GPR161	chromosome:C_jacchus3.2.1:18:1:47448759:1	38152135	38198764	D	G-protein coupled receptor 161 isoform 1 {ECO:0000313|EMBL:JAB05283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031092}  [Source:UniProtKB/TrEMBL;Acc:F7HT85]
ENSCJAG00000019837	KNOWN	protein_coding	CDIP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	4580956	4777483	R	LITAF-like protein isoform a {ECO:0000313|EMBL:JAB11038.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025435}  [Source:UniProtKB/TrEMBL;Acc:F6W0H0]
ENSCJAG00000002897	NOVEL	protein_coding	ENSCJAG00000002897	scaffold:C_jacchus3.2.1:GL286426.1:1:803192:1	128573	130283	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041963}  [Source:UniProtKB/TrEMBL;Acc:H9KXY1]
ENSCJAG00000016812	KNOWN_BY_PROJECTION	protein_coding	TBX19	chromosome:C_jacchus3.2.1:18:1:47448759:1	37995374	38026689	R	T-box 19 [Source:HGNC Symbol;Acc:HGNC:11596]
ENSCJAG00000003586	NOVEL	protein_coding	ENSCJAG00000003586	chromosome:C_jacchus3.2.1:18:1:47448759:1	37839333	37841149	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043222}  [Source:UniProtKB/TrEMBL;Acc:F7ICQ3]
ENSCJAG00000033934	NOVEL	protein_coding	ENSCJAG00000033934	scaffold:C_jacchus3.2.1:ACFV01189318.1:1:6893:1	1274	4213	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050511}  [Source:UniProtKB/TrEMBL;Acc:H9KYH2]
ENSCJAG00000019834	KNOWN	protein_coding	HMOX2	chromosome:C_jacchus3.2.1:12:1:121768101:1	4542340	4579694	D	Heme oxygenase 2 {ECO:0000313|EMBL:JAB02272.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047391}  [Source:UniProtKB/TrEMBL;Acc:F7HUJ8]
ENSCJAG00000004340	NOVEL	protein_coding	ENSCJAG00000004340	scaffold:C_jacchus3.2.1:GL286372.1:1:25555:1	6108	6890	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007841}  [Source:UniProtKB/TrEMBL;Acc:H9KW39]
ENSCJAG00000005122	NOVEL	pseudogene	ENSCJAG00000005122	scaffold:C_jacchus3.2.1:ACFV01174550.1:1:49126:1	39155	40374	R	<no descrition>
ENSCJAG00000019832	KNOWN	protein_coding	NMRAL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	4522517	4536357	R	NmrA-like family domain-containing protein 1 {ECO:0000313|EMBL:JAB12161.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036861}  [Source:UniProtKB/TrEMBL;Acc:F6SZ08]
ENSCJAG00000007991	NOVEL	protein_coding	ENSCJAG00000007991	scaffold:C_jacchus3.2.1:ACFV01181120.1:1:9270:1	525	992	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014758}  [Source:UniProtKB/TrEMBL;Acc:H9KWH0]
ENSCJAG00000013807	NOVEL	protein_coding	ENSCJAG00000013807	scaffold:C_jacchus3.2.1:ACFV01185297.1:1:7101:1	274	4456	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025390}  [Source:UniProtKB/TrEMBL;Acc:H9KX17]
ENSCJAG00000006073	KNOWN	protein_coding	FAM149A	chromosome:C_jacchus3.2.1:3:1:190850796:1	3286634	3308832	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011155}  [Source:UniProtKB/TrEMBL;Acc:F7I1V6]
ENSCJAG00000010317	KNOWN	protein_coding	ATP1B1	chromosome:C_jacchus3.2.1:18:1:47448759:1	37255068	37280725	R	Sodium/potassium-transporting ATPase subunit beta-1 {ECO:0000313|EMBL:JAB21762.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019060}  [Source:UniProtKB/TrEMBL;Acc:F6TGM1]
ENSCJAG00000031509	NOVEL	protein_coding	ENSCJAG00000031509	scaffold:C_jacchus3.2.1:ACFV01176300.1:1:18166:1	14436	16428	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049653}  [Source:UniProtKB/TrEMBL;Acc:H9KYF0]
ENSCJAG00000020265	KNOWN_BY_PROJECTION	protein_coding	CYP4V2	chromosome:C_jacchus3.2.1:3:1:190850796:1	3256369	3277276	R	cytochrome P450, family 4, subfamily V, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:23198]
ENSCJAG00000034078	NOVEL	protein_coding	ENSCJAG00000034078	scaffold:C_jacchus3.2.1:GL286841.1:1:8645:1	3374	4677	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024028}  [Source:UniProtKB/TrEMBL;Acc:H9KWZ0]
ENSCJAG00000032185	NOVEL	pseudogene	ENSCJAG00000032185	scaffold:C_jacchus3.2.1:GL286522.1:1:4783:1	2611	3682	R	<no descrition>
ENSCJAG00000034511	NOVEL	protein_coding	ENSCJAG00000034511	scaffold:C_jacchus3.2.1:GL286226.1:1:129224:1	94614	95818	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052439}  [Source:UniProtKB/TrEMBL;Acc:H9KYM9]
ENSCJAG00000022845	NOVEL	processed_pseudogene	ENSCJAG00000022845	chromosome:C_jacchus3.2.1:5:1:159171411:1	96913933	96914382	R	<no descrition>
ENSCJAG00000022846	NOVEL	processed_pseudogene	ENSCJAG00000022846	chromosome:C_jacchus3.2.1:5:1:159171411:1	96651716	96652066	D	<no descrition>
ENSCJAG00000023042	NOVEL	processed_pseudogene	ENSCJAG00000023042	chromosome:C_jacchus3.2.1:5:1:159171411:1	60849862	60850341	R	<no descrition>
ENSCJAG00000017369	KNOWN	protein_coding	SUPT4H1	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	601889	608791	R	Transcription elongation factor SPT4 {ECO:0000256|PIRNR:PIRNR025023}  [Source:UniProtKB/TrEMBL;Acc:H9KXA4]
ENSCJAG00000023203	NOVEL	processed_pseudogene	ENSCJAG00000023203	chromosome:C_jacchus3.2.1:5:1:159171411:1	47762636	47762941	R	<no descrition>
ENSCJAG00000035274	NOVEL	processed_pseudogene	ENSCJAG00000035274	chromosome:C_jacchus3.2.1:5:1:159171411:1	43618466	43619314	D	<no descrition>
ENSCJAG00000023426	KNOWN	protein_coding	C17ORF96	chromosome:C_jacchus3.2.1:5:1:159171411:1	110531519	110532658	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041919}; Uncharacterized protein C17orf96 {ECO:0000313|EMBL:JAB31301.1}  [Source:UniProtKB/TrEMBL;Acc:F7GZE8]
ENSCJAG00000037566	NOVEL	protein_coding	ENSCJAG00000037566	chromosome:C_jacchus3.2.1:5:1:159171411:1	108951954	108952061	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052095}  [Source:UniProtKB/TrEMBL;Acc:F7IEL9]
ENSCJAG00000031793	NOVEL	pseudogene	ENSCJAG00000031793	scaffold:C_jacchus3.2.1:GL286657.1:1:19404:1	1562	2033	R	<no descrition>
ENSCJAG00000012447	NOVEL	protein_coding	ENSCJAG00000012447	scaffold:C_jacchus3.2.1:GL285518.1:1:30939:1	8966	12721	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022792}  [Source:UniProtKB/TrEMBL;Acc:H9KWX4]
ENSCJAG00000022817	NOVEL	protein_coding	ENSCJAG00000022817	chromosome:C_jacchus3.2.1:5:1:159171411:1	96901469	96901879	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7EAN5]
ENSCJAG00000022819	NOVEL	protein_coding	ENSCJAG00000022819	chromosome:C_jacchus3.2.1:5:1:159171411:1	94894638	94895165	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018460}  [Source:UniProtKB/TrEMBL;Acc:F7GJF2]
ENSCJAG00000021997	NOVEL	protein_coding	ENSCJAG00000021997	chromosome:C_jacchus3.2.1:5:1:159171411:1	94711439	94712703	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047943}  [Source:UniProtKB/TrEMBL;Acc:F7EF65]
ENSCJAG00000031966	NOVEL	protein_coding	ENSCJAG00000031966	chromosome:C_jacchus3.2.1:5:1:159171411:1	88088076	88088339	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045016}  [Source:UniProtKB/TrEMBL;Acc:F6U5V6]
ENSCJAG00000022822	NOVEL	protein_coding	ENSCJAG00000022822	chromosome:C_jacchus3.2.1:5:1:159171411:1	93887354	93887769	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041403}  [Source:UniProtKB/TrEMBL;Acc:F7DFD1]
ENSCJAG00000012139	KNOWN_BY_PROJECTION	protein_coding	JUP	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	386169	399779	D	junction plakoglobin [Source:HGNC Symbol;Acc:HGNC:6207]
ENSCJAG00000019812	KNOWN	protein_coding	VASN	chromosome:C_jacchus3.2.1:12:1:121768101:1	4422120	4432515	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046631}  [Source:UniProtKB/TrEMBL;Acc:F7IPW5]
ENSCJAG00000022282	NOVEL	protein_coding	ENSCJAG00000022282	chromosome:C_jacchus3.2.1:5:1:159171411:1	80993434	80994979	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040929}  [Source:UniProtKB/TrEMBL;Acc:F7HZR3]
ENSCJAG00000034052	NOVEL	protein_coding	ENSCJAG00000034052	chromosome:C_jacchus3.2.1:5:1:159171411:1	77016389	77016727	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042579}  [Source:UniProtKB/TrEMBL;Acc:F6UIJ1]
ENSCJAG00000002990	NOVEL	protein_coding	ENSCJAG00000002990	scaffold:C_jacchus3.2.1:ACFV01187991.1:1:5153:1	976	1849	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005403}  [Source:UniProtKB/TrEMBL;Acc:H9KVX7]
ENSCJAG00000022544	KNOWN	protein_coding	KCTD11	chromosome:C_jacchus3.2.1:5:1:159171411:1	74512073	74515106	R	BTB/POZ domain-containing protein KCTD11 {ECO:0000313|EMBL:JAB10663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041151}  [Source:UniProtKB/TrEMBL;Acc:F7DX40]
ENSCJAG00000035472	NOVEL	protein_coding	ENSCJAG00000035472	chromosome:C_jacchus3.2.1:5:1:159171411:1	74223569	74223734	R	<no descrition>
ENSCJAG00000003091	NOVEL	protein_coding	ENSCJAG00000003091	scaffold:C_jacchus3.2.1:GL286343.1:1:20416:1	924	6314	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005605}  [Source:UniProtKB/TrEMBL;Acc:H9KVZ3]
ENSCJAG00000023107	KNOWN	protein_coding	C17ORF59	chromosome:C_jacchus3.2.1:5:1:159171411:1	73657171	73659077	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041635}; Uncharacterized protein C17orf59 {ECO:0000313|EMBL:JAB08994.1}  [Source:UniProtKB/TrEMBL;Acc:F7DDX1]
ENSCJAG00000023381	KNOWN	protein_coding	ENSCJAG00000023381	chromosome:C_jacchus3.2.1:5:1:159171411:1	64226301	64226980	D	CREB regulated transcription coactivator 1-like protein {ECO:0000313|EMBL:ABQ22686.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041877}  [Source:UniProtKB/TrEMBL;Acc:A6MKU5]
ENSCJAG00000023439	KNOWN_BY_PROJECTION	protein_coding	GSG2	chromosome:C_jacchus3.2.1:5:1:159171411:1	62577946	62580735	D	germ cell associated 2 (haspin) [Source:HGNC Symbol;Acc:HGNC:19682]
ENSCJAG00000010798	KNOWN_BY_PROJECTION	protein_coding	MMP11	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	56170	61175	D	matrix metallopeptidase 11 (stromelysin 3) [Source:HGNC Symbol;Acc:HGNC:7157]
ENSCJAG00000021844	NOVEL	protein_coding	ENSCJAG00000021844	chromosome:C_jacchus3.2.1:5:1:159171411:1	61596094	61596285	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040545}  [Source:UniProtKB/TrEMBL;Acc:F7ITB1]
ENSCJAG00000021746	NOVEL	protein_coding	ENSCJAG00000021746	chromosome:C_jacchus3.2.1:5:1:159171411:1	59454875	59455223	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040458}  [Source:UniProtKB/TrEMBL;Acc:F7I761]
ENSCJAG00000021747	KNOWN	protein_coding	ENSCJAG00000021747	chromosome:C_jacchus3.2.1:5:1:159171411:1	59267293	59267629	D	Endozepine-like protein {ECO:0000313|EMBL:AAF79123.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040459}  [Source:UniProtKB/TrEMBL;Acc:Q9MZG0]
ENSCJAG00000022380	KNOWN_BY_PROJECTION	protein_coding	NPBWR2	chromosome:C_jacchus3.2.1:5:1:159171411:1	58132338	58133339	R	neuropeptides B/W receptor 2 [Source:HGNC Symbol;Acc:HGNC:4530]
ENSCJAG00000010499	KNOWN_BY_PROJECTION	protein_coding	ABHD16B	chromosome:C_jacchus3.2.1:5:1:159171411:1	57875077	57876357	D	abhydrolase domain containing 16B [Source:HGNC Symbol;Acc:HGNC:16128]
ENSCJAG00000035459	NOVEL	protein_coding	ENSCJAG00000035459	chromosome:C_jacchus3.2.1:5:1:159171411:1	53119683	53119919	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011344}  [Source:UniProtKB/TrEMBL;Acc:F7I8V5]
ENSCJAG00000033851	NOVEL	protein_coding	ENSCJAG00000033851	chromosome:C_jacchus3.2.1:5:1:159171411:1	50317745	50318383	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044281}  [Source:UniProtKB/TrEMBL;Acc:F7D2A5]
ENSCJAG00000022489	NOVEL	protein_coding	ENSCJAG00000022489	chromosome:C_jacchus3.2.1:5:1:159171411:1	48182847	48183653	D	40S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}  [Source:UniProtKB/TrEMBL;Acc:F7DXN1]
ENSCJAG00000022600	KNOWN_BY_PROJECTION	protein_coding	KCNB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	43387008	43389023	R	potassium channel, voltage gated Shab related subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6231]
ENSCJAG00000020056	NOVEL	protein_coding	ENSCJAG00000020056	scaffold:C_jacchus3.2.1:GL285785.1:1:54187:1	39798	42213	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037293}  [Source:UniProtKB/TrEMBL;Acc:H9KXK3]
ENSCJAG00000022202	NOVEL	processed_pseudogene	ENSCJAG00000022202	chromosome:C_jacchus3.2.1:10:1:132174527:1	21996362	21996913	R	<no descrition>
ENSCJAG00000006832	NOVEL	protein_coding	ENSCJAG00000006832	scaffold:C_jacchus3.2.1:ACFV01197305.1:1:2583:1	43	601	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012641}  [Source:UniProtKB/TrEMBL;Acc:H9KWC7]
ENSCJAG00000022189	NOVEL	processed_pseudogene	ENSCJAG00000022189	chromosome:C_jacchus3.2.1:10:1:132174527:1	21211015	21211341	D	<no descrition>
ENSCJAG00000022203	NOVEL	processed_pseudogene	ENSCJAG00000022203	chromosome:C_jacchus3.2.1:10:1:132174527:1	20150384	20150909	D	<no descrition>
ENSCJAG00000020055	NOVEL	protein_coding	ENSCJAG00000020055	scaffold:C_jacchus3.2.1:GL285785.1:1:54187:1	25171	27627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037291}  [Source:UniProtKB/TrEMBL;Acc:H9KXK2]
ENSCJAG00000023102	NOVEL	processed_pseudogene	ENSCJAG00000023102	chromosome:C_jacchus3.2.1:10:1:132174527:1	17529629	17530102	R	<no descrition>
ENSCJAG00000023350	NOVEL	processed_pseudogene	ENSCJAG00000023350	chromosome:C_jacchus3.2.1:10:1:132174527:1	4335220	4335603	D	<no descrition>
ENSCJAG00000032261	NOVEL	protein_coding	ENSCJAG00000032261	scaffold:C_jacchus3.2.1:GL285332.1:1:10106:1	2613	3546	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025502}  [Source:UniProtKB/TrEMBL;Acc:H9KX21]
ENSCJAG00000022594	NOVEL	protein_coding	ENSCJAG00000022594	chromosome:C_jacchus3.2.1:10:1:132174527:1	15047515	15048372	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041195}  [Source:UniProtKB/TrEMBL;Acc:F7DGY0]
ENSCJAG00000033947	NOVEL	protein_coding	ENSCJAG00000033947	scaffold:C_jacchus3.2.1:GL285883.1:1:14676:1	10429	11322	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023981}  [Source:UniProtKB/TrEMBL;Acc:H9KWY8]
ENSCJAG00000022891	NOVEL	protein_coding	ENSCJAG00000022891	chromosome:C_jacchus3.2.1:4:1:171630274:1	170098180	170098548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041462}  [Source:UniProtKB/TrEMBL;Acc:F7H5B6]
ENSCJAG00000009347	NOVEL	pseudogene	ENSCJAG00000009347	scaffold:C_jacchus3.2.1:ACFV01191663.1:1:4929:1	1494	2214	R	<no descrition>
ENSCJAG00000012870	NOVEL	protein_coding	ENSCJAG00000012870	chromosome:C_jacchus3.2.1:4:1:171630274:1	168401348	168402907	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023568}  [Source:UniProtKB/TrEMBL;Acc:F7I3V4]
ENSCJAG00000022894	NOVEL	protein_coding	ENSCJAG00000022894	chromosome:C_jacchus3.2.1:4:1:171630274:1	159912187	159913179	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041465}  [Source:UniProtKB/TrEMBL;Acc:F7H5A7]
ENSCJAG00000031246	NOVEL	protein_coding	ENSCJAG00000031246	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	263577	273787	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031694}  [Source:UniProtKB/TrEMBL;Acc:H9KX94]
ENSCJAG00000022893	NOVEL	protein_coding	ENSCJAG00000022893	chromosome:C_jacchus3.2.1:4:1:171630274:1	159615075	159615598	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041464}  [Source:UniProtKB/TrEMBL;Acc:F7H5B2]
ENSCJAG00000022264	KNOWN_BY_PROJECTION	protein_coding	SF3B5	chromosome:C_jacchus3.2.1:4:1:171630274:1	144772022	144772759	R	splicing factor 3b, subunit 5, 10kDa [Source:HGNC Symbol;Acc:HGNC:21083]
ENSCJAG00000022263	NOVEL	protein_coding	ENSCJAG00000022263	chromosome:C_jacchus3.2.1:4:1:171630274:1	139599682	139600071	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040910}  [Source:UniProtKB/TrEMBL;Acc:F7I227]
ENSCJAG00000011284	KNOWN	protein_coding	CA12	scaffold:C_jacchus3.2.1:GL285434.1:1:81982:1	52383	74472	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020790}  [Source:UniProtKB/TrEMBL;Acc:H9KWT3]
ENSCJAG00000002918	KNOWN_BY_PROJECTION	protein_coding	TAAR5	chromosome:C_jacchus3.2.1:4:1:171630274:1	132954768	132955904	R	trace amine associated receptor 5 [Source:HGNC Symbol;Acc:HGNC:30236]
ENSCJAG00000010873	NOVEL	pseudogene	ENSCJAG00000010873	scaffold:C_jacchus3.2.1:GL284810.1:1:17238:1	9196	10366	R	<no descrition>
ENSCJAG00000013333	KNOWN	protein_coding	TMEM117	chromosome:C_jacchus3.2.1:9:1:124281992:1	26950822	27472285	R	Transmembrane protein 117 {ECO:0000313|EMBL:JAB03311.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024494}  [Source:UniProtKB/TrEMBL;Acc:F7HIT2]
ENSCJAG00000002547	NOVEL	pseudogene	ENSCJAG00000002547	scaffold:C_jacchus3.2.1:GL285498.1:1:21777:1	17377	18176	D	<no descrition>
ENSCJAG00000021897	NOVEL	processed_pseudogene	ENSCJAG00000021897	chromosome:C_jacchus3.2.1:2:1:204313951:1	39040643	39041317	R	<no descrition>
ENSCJAG00000022352	NOVEL	processed_pseudogene	ENSCJAG00000022352	chromosome:C_jacchus3.2.1:2:1:204313951:1	30907612	30908092	R	<no descrition>
ENSCJAG00000023100	NOVEL	processed_pseudogene	ENSCJAG00000023100	chromosome:C_jacchus3.2.1:2:1:204313951:1	24501551	24501853	R	<no descrition>
ENSCJAG00000022298	NOVEL	processed_pseudogene	ENSCJAG00000022298	chromosome:C_jacchus3.2.1:2:1:204313951:1	21245292	21245771	D	<no descrition>
ENSCJAG00000023138	NOVEL	processed_pseudogene	ENSCJAG00000023138	chromosome:C_jacchus3.2.1:2:1:204313951:1	11866186	11866647	D	<no descrition>
ENSCJAG00000031685	NOVEL	pseudogene	ENSCJAG00000031685	scaffold:C_jacchus3.2.1:GL286882.1:1:9140:1	7600	8367	D	<no descrition>
ENSCJAG00000034641	NOVEL	processed_pseudogene	ENSCJAG00000034641	chromosome:C_jacchus3.2.1:2:1:204313951:1	5958005	5958484	R	<no descrition>
ENSCJAG00000022399	NOVEL	processed_pseudogene	ENSCJAG00000022399	chromosome:C_jacchus3.2.1:14:1:108792865:1	59431981	59432506	D	<no descrition>
ENSCJAG00000022398	NOVEL	processed_pseudogene	ENSCJAG00000022398	chromosome:C_jacchus3.2.1:14:1:108792865:1	56704042	56704521	R	<no descrition>
ENSCJAG00000031803	NOVEL	processed_pseudogene	ENSCJAG00000031803	chromosome:C_jacchus3.2.1:7:1:155834243:1	149192653	149193087	D	<no descrition>
ENSCJAG00000033118	NOVEL	processed_pseudogene	ENSCJAG00000033118	chromosome:C_jacchus3.2.1:14:1:108792865:1	54699811	54700347	D	<no descrition>
ENSCJAG00000022502	NOVEL	processed_pseudogene	ENSCJAG00000022502	chromosome:C_jacchus3.2.1:7:1:155834243:1	144953868	144954839	R	<no descrition>
ENSCJAG00000022604	NOVEL	processed_pseudogene	ENSCJAG00000022604	chromosome:C_jacchus3.2.1:7:1:155834243:1	129487579	129488058	R	<no descrition>
ENSCJAG00000035026	NOVEL	processed_pseudogene	ENSCJAG00000035026	chromosome:C_jacchus3.2.1:7:1:155834243:1	128119321	128119521	R	<no descrition>
ENSCJAG00000021839	NOVEL	processed_pseudogene	ENSCJAG00000021839	chromosome:C_jacchus3.2.1:7:1:155834243:1	128099481	128100545	R	<no descrition>
ENSCJAG00000022650	NOVEL	processed_pseudogene	ENSCJAG00000022650	chromosome:C_jacchus3.2.1:14:1:108792865:1	45533340	45533813	D	<no descrition>
ENSCJAG00000021841	NOVEL	processed_pseudogene	ENSCJAG00000021841	chromosome:C_jacchus3.2.1:7:1:155834243:1	125680452	125681456	R	<no descrition>
ENSCJAG00000033803	NOVEL	processed_pseudogene	ENSCJAG00000033803	chromosome:C_jacchus3.2.1:14:1:108792865:1	34994467	34994769	R	<no descrition>
ENSCJAG00000023453	NOVEL	processed_pseudogene	ENSCJAG00000023453	chromosome:C_jacchus3.2.1:7:1:155834243:1	122764674	122765199	D	<no descrition>
ENSCJAG00000022302	NOVEL	processed_pseudogene	ENSCJAG00000022302	chromosome:C_jacchus3.2.1:14:1:108792865:1	21106815	21107396	R	<no descrition>
ENSCJAG00000001024	NOVEL	protein_coding	ENSCJAG00000001024	scaffold:C_jacchus3.2.1:GL284913.1:1:50982:1	18353	21171	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035115}  [Source:UniProtKB/TrEMBL;Acc:H9KXG9]
ENSCJAG00000022737	NOVEL	processed_pseudogene	ENSCJAG00000022737	chromosome:C_jacchus3.2.1:14:1:108792865:1	6714068	6714421	R	<no descrition>
ENSCJAG00000021346	KNOWN_BY_PROJECTION	protein_coding	KCTD16	chromosome:C_jacchus3.2.1:2:1:204313951:1	41297857	41298693	D	potassium channel tetramerization domain containing 16 [Source:HGNC Symbol;Acc:HGNC:29244]
ENSCJAG00000013619	NOVEL	protein_coding	ENSCJAG00000013619	scaffold:C_jacchus3.2.1:GL286355.1:1:20452:1	281	3040	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025049}  [Source:UniProtKB/TrEMBL;Acc:H9KX08]
ENSCJAG00000022323	NOVEL	protein_coding	ENSCJAG00000022323	chromosome:C_jacchus3.2.1:2:1:204313951:1	31191000	31191477	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040963}  [Source:UniProtKB/TrEMBL;Acc:F7HPX0]
ENSCJAG00000031814	NOVEL	protein_coding	ENSCJAG00000031814	chromosome:C_jacchus3.2.1:14:1:108792865:1	60387396	60387566	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032021}  [Source:UniProtKB/TrEMBL;Acc:F7D3Q9]
ENSCJAG00000023086	KNOWN	protein_coding	CKS1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	14551567	14552319	R	Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}  [Source:UniProtKB/TrEMBL;Acc:F7DV71]
ENSCJAG00000022442	NOVEL	protein_coding	ENSCJAG00000022442	chromosome:C_jacchus3.2.1:14:1:108792865:1	59377942	59378589	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052239}  [Source:UniProtKB/TrEMBL;Acc:F7ILE5]
ENSCJAG00000023085	KNOWN_BY_PROJECTION	protein_coding	BHLHA15	chromosome:C_jacchus3.2.1:2:1:204313951:1	13816487	13817183	R	basic helix-loop-helix family, member a15 [Source:HGNC Symbol;Acc:HGNC:22265]
ENSCJAG00000031284	NOVEL	protein_coding	ENSCJAG00000031284	chromosome:C_jacchus3.2.1:14:1:108792865:1	58856496	58856651	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051053}  [Source:UniProtKB/TrEMBL;Acc:F7CHY2]
ENSCJAG00000023084	NOVEL	protein_coding	ENSCJAG00000023084	chromosome:C_jacchus3.2.1:2:1:204313951:1	13558914	13559495	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041617}  [Source:UniProtKB/TrEMBL;Acc:F7DV95]
ENSCJAG00000022368	KNOWN_BY_PROJECTION	protein_coding	RPS7	chromosome:C_jacchus3.2.1:14:1:108792865:1	53404617	53405258	D	ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
ENSCJAG00000017418	KNOWN	protein_coding	MTMR4	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	770185	778800	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032136}  [Source:UniProtKB/TrEMBL;Acc:H9KXB0]
ENSCJAG00000023139	NOVEL	protein_coding	CJA196	chromosome:C_jacchus3.2.1:2:1:204313951:1	12277517	12278461	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAD4]
ENSCJAG00000022367	KNOWN_BY_PROJECTION	protein_coding	TSPYL6	chromosome:C_jacchus3.2.1:14:1:108792865:1	53276356	53277576	D	TSPY-like 6 [Source:HGNC Symbol;Acc:HGNC:14521]
ENSCJAG00000031616	NOVEL	protein_coding	ENSCJAG00000031616	scaffold:C_jacchus3.2.1:GL286774.1:1:10142:1	1014	1464	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042966}  [Source:UniProtKB/TrEMBL;Acc:H9KY01]
ENSCJAG00000031287	NOVEL	protein_coding	ENSCJAG00000031287	chromosome:C_jacchus3.2.1:14:1:108792865:1	44053911	44054306	D	40S ribosomal protein S12 {ECO:0000256|RuleBase:RU000670}  [Source:UniProtKB/TrEMBL;Acc:F7I7X4]
ENSCJAG00000013208	NOVEL	protein_coding	ENSCJAG00000013208	chromosome:C_jacchus3.2.1:9:1:124281992:1	26039626	26041410	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024251}  [Source:UniProtKB/TrEMBL;Acc:F7FPZ2]
ENSCJAG00000016729	NOVEL	pseudogene	ENSCJAG00000016729	scaffold:C_jacchus3.2.1:ACFV01180985.1:1:11763:1	1634	2712	R	<no descrition>
ENSCJAG00000032062	NOVEL	protein_coding	ENSCJAG00000032062	chromosome:C_jacchus3.2.1:2:1:204313951:1	9606432	9606914	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046428}  [Source:UniProtKB/TrEMBL;Acc:F7IQ08]
ENSCJAG00000000993	NOVEL	protein_coding	ENSCJAG00000000993	scaffold:C_jacchus3.2.1:GL285539.1:1:84105:1	15324	17215	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042008}  [Source:UniProtKB/TrEMBL;Acc:H9KXY2]
ENSCJAG00000032396	NOVEL	protein_coding	ENSCJAG00000032396	chromosome:C_jacchus3.2.1:2:1:204313951:1	2585072	2585227	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047019}  [Source:UniProtKB/TrEMBL;Acc:F7IDL5]
ENSCJAG00000033182	NOVEL	protein_coding	ENSCJAG00000033182	chromosome:C_jacchus3.2.1:2:1:204313951:1	4535973	4536185	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044713}  [Source:UniProtKB/TrEMBL;Acc:F7GQV3]
ENSCJAG00000019778	NOVEL	protein_coding	ENSCJAG00000019778	chromosome:C_jacchus3.2.1:12:1:121768101:1	4404430	4470215	R	Coronin {ECO:0000256|RuleBase:RU280818}  [Source:UniProtKB/TrEMBL;Acc:F6VXF6]
ENSCJAG00000011301	NOVEL	protein_coding	ENSCJAG00000011301	scaffold:C_jacchus3.2.1:GL284713.1:1:23410:1	2631	10408	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020796}  [Source:UniProtKB/TrEMBL;Acc:H9KWT4]
ENSCJAG00000031633	NOVEL	protein_coding	ENSCJAG00000031633	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	459859	467664	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004383}  [Source:UniProtKB/TrEMBL;Acc:H9KVT7]
ENSCJAG00000033907	NOVEL	protein_coding	ENSCJAG00000033907	scaffold:C_jacchus3.2.1:ACFV01180556.1:1:16783:1	15142	15607	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024031}  [Source:UniProtKB/TrEMBL;Acc:H9KWZ1]
ENSCJAG00000003022	NOVEL	protein_coding	ENSCJAG00000003022	scaffold:C_jacchus3.2.1:GL286454.1:1:142343:1	20796	41251	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005482}  [Source:UniProtKB/TrEMBL;Acc:H9KVY3]
ENSCJAG00000004479	NOVEL	protein_coding	ENSCJAG00000004479	scaffold:C_jacchus3.2.1:GL284752.1:1:16706:1	1360	6452	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008103}  [Source:UniProtKB/TrEMBL;Acc:H9KW44]
ENSCJAG00000020280	NOVEL	protein_coding	ENSCJAG00000020280	scaffold:C_jacchus3.2.1:GL289106.1:1:10902:1	6282	8558	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037698}  [Source:UniProtKB/TrEMBL;Acc:H9KXK7]
ENSCJAG00000000068	KNOWN_BY_PROJECTION	protein_coding	C11orf73	scaffold:C_jacchus3.2.1:GL285538.1:1:16937:1	7572	11947	D	chromosome 11 open reading frame 73 [Source:HGNC Symbol;Acc:HGNC:26938]
ENSCJAG00000015977	NOVEL	protein_coding	ENSCJAG00000015977	scaffold:C_jacchus3.2.1:ACFV01182586.1:1:11281:1	1044	3834	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029405}  [Source:UniProtKB/TrEMBL;Acc:H9KX63]
ENSCJAG00000019772	KNOWN	protein_coding	PAM16	chromosome:C_jacchus3.2.1:12:1:121768101:1	4392852	4400877	R	Mitochondrial import inner membrane translocase subunit TIM16 {ECO:0000313|EMBL:JAB18288.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036768}  [Source:UniProtKB/TrEMBL;Acc:F6QKB3]
ENSCJAG00000007461	NOVEL	protein_coding	ENSCJAG00000007461	scaffold:C_jacchus3.2.1:GL288840.1:1:9150:1	2711	3980	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013862}  [Source:UniProtKB/TrEMBL;Acc:H9KWD7]
ENSCJAG00000033076	KNOWN	protein_coding	ABCG1	scaffold:C_jacchus3.2.1:GL285876.1:1:36425:1	12777	33290	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051136}  [Source:UniProtKB/TrEMBL;Acc:H9KYI6]
ENSCJAG00000034809	NOVEL	protein_coding	ENSCJAG00000034809	scaffold:C_jacchus3.2.1:ACFV01182613.1:1:12347:1	8661	9113	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048164}  [Source:UniProtKB/TrEMBL;Acc:H9KYB3]
ENSCJAG00000020416	NOVEL	pseudogene	ENSCJAG00000020416	chromosome:C_jacchus3.2.1:3:1:190850796:1	2279930	2280444	R	<no descrition>
ENSCJAG00000003265	NOVEL	pseudogene	ENSCJAG00000003265	scaffold:C_jacchus3.2.1:ACFV01181242.1:1:18048:1	10718	10989	D	<no descrition>
ENSCJAG00000019770	KNOWN	protein_coding	GLIS2	chromosome:C_jacchus3.2.1:12:1:121768101:1	4382823	4390114	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036760}; Zinc finger protein GLIS2 {ECO:0000313|EMBL:JAB02372.1}  [Source:UniProtKB/TrEMBL;Acc:F6QVA6]
ENSCJAG00000008757	NOVEL	protein_coding	ENSCJAG00000008757	chromosome:C_jacchus3.2.1:3:1:190850796:1	1827837	1828858	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050549}  [Source:UniProtKB/TrEMBL;Acc:F7EXD1]
ENSCJAG00000031357	NOVEL	pseudogene	ENSCJAG00000031357	scaffold:C_jacchus3.2.1:ACFV01181242.1:1:18048:1	4895	5172	D	<no descrition>
ENSCJAG00000010109	NOVEL	pseudogene	ENSCJAG00000010109	scaffold:C_jacchus3.2.1:GL284725.1:1:85960:1	39554	40680	R	<no descrition>
ENSCJAG00000008749	NOVEL	pseudogene	ENSCJAG00000008749	chromosome:C_jacchus3.2.1:3:1:190850796:1	1763709	1764680	D	<no descrition>
ENSCJAG00000010834	KNOWN_BY_PROJECTION	protein_coding	ZFP42	chromosome:C_jacchus3.2.1:3:1:190850796:1	1581142	1582231	R	ZFP42 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:30949]
ENSCJAG00000019583	NOVEL	pseudogene	ENSCJAG00000019583	scaffold:C_jacchus3.2.1:GL288835.1:1:23959:1	22958	23475	R	<no descrition>
ENSCJAG00000019756	KNOWN	protein_coding	TFAP4	chromosome:C_jacchus3.2.1:12:1:121768101:1	4306194	4323874	R	Transcription factor AP-4 {ECO:0000313|EMBL:JAB09713.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036754}  [Source:UniProtKB/TrEMBL;Acc:F6QVV9]
ENSCJAG00000033616	NOVEL	protein_coding	ENSCJAG00000033616	scaffold:C_jacchus3.2.1:ACFV01182060.1:1:8956:1	551	4619	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040103}  [Source:UniProtKB/TrEMBL;Acc:H9KXN5]
ENSCJAG00000010827	NOVEL	pseudogene	ENSCJAG00000010827	chromosome:C_jacchus3.2.1:3:1:190850796:1	1512156	1512463	D	<no descrition>
ENSCJAG00000020712	NOVEL	protein_coding	ENSCJAG00000020712	scaffold:C_jacchus3.2.1:GL285559.1:1:78824:1	61120	64639	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038515}  [Source:UniProtKB/TrEMBL;Acc:H9KXM4]
ENSCJAG00000032135	NOVEL	protein_coding	ENSCJAG00000032135	chromosome:C_jacchus3.2.1:7:1:155834243:1	153049333	153049743	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051857}  [Source:UniProtKB/TrEMBL;Acc:F6VZK5]
ENSCJAG00000010806	KNOWN_BY_PROJECTION	protein_coding	TRIML1	chromosome:C_jacchus3.2.1:3:1:190850796:1	1447566	1455487	R	tripartite motif family-like 1 [Source:HGNC Symbol;Acc:HGNC:26698]
ENSCJAG00000014790	NOVEL	protein_coding	ENSCJAG00000014790	chromosome:C_jacchus3.2.1:14:1:108792865:1	37445712	37447948	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027289}  [Source:UniProtKB/TrEMBL;Acc:F7F206]
ENSCJAG00000022771	NOVEL	protein_coding	ENSCJAG00000022771	chromosome:C_jacchus3.2.1:7:1:155834243:1	149983398	149983799	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041354}  [Source:UniProtKB/TrEMBL;Acc:F7F295]
ENSCJAG00000021940	NOVEL	protein_coding	ENSCJAG00000021940	chromosome:C_jacchus3.2.1:14:1:108792865:1	32120911	32121765	D	Purine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_03155}  [Source:UniProtKB/TrEMBL;Acc:F7IE12]
ENSCJAG00000022770	NOVEL	protein_coding	ENSCJAG00000022770	chromosome:C_jacchus3.2.1:7:1:155834243:1	149912106	149912732	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041353}  [Source:UniProtKB/TrEMBL;Acc:F7F298]
ENSCJAG00000034284	NOVEL	protein_coding	ENSCJAG00000034284	scaffold:C_jacchus3.2.1:GL285460.1:1:31735:1	5550	6016	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024022}  [Source:UniProtKB/TrEMBL;Acc:H9KWY9]
ENSCJAG00000032987	NOVEL	protein_coding	ENSCJAG00000032987	scaffold:C_jacchus3.2.1:GL285460.1:1:31735:1	8338	8771	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051691}  [Source:UniProtKB/TrEMBL;Acc:H9KYK0]
ENSCJAG00000020191	KNOWN_BY_PROJECTION	protein_coding	C16orf87	scaffold:C_jacchus3.2.1:GL285856.1:1:24147:1	693	7857	R	chromosome 16 open reading frame 87 [Source:HGNC Symbol;Acc:HGNC:33754]
ENSCJAG00000022625	KNOWN	protein_coding	PRMT6	chromosome:C_jacchus3.2.1:7:1:155834243:1	143098164	143099337	D	Protein arginine N-methyltransferase 6 {ECO:0000313|EMBL:JAB38618.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041224}  [Source:UniProtKB/TrEMBL;Acc:F7HAX3]
ENSCJAG00000005238	NOVEL	protein_coding	ENSCJAG00000005238	scaffold:C_jacchus3.2.1:GL289816.1:1:8841:1	3237	7566	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009573}  [Source:UniProtKB/TrEMBL;Acc:H9KW58]
ENSCJAG00000022626	NOVEL	protein_coding	ENSCJAG00000022626	chromosome:C_jacchus3.2.1:7:1:155834243:1	137710761	137711552	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041225}  [Source:UniProtKB/TrEMBL;Acc:F7HAX1]
ENSCJAG00000032173	NOVEL	pseudogene	ENSCJAG00000032173	scaffold:C_jacchus3.2.1:GL286073.1:1:15138:1	12215	13009	D	<no descrition>
ENSCJAG00000022565	NOVEL	protein_coding	ENSCJAG00000022565	chromosome:C_jacchus3.2.1:7:1:155834243:1	131306520	131306873	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041166}  [Source:UniProtKB/TrEMBL;Acc:F7DWZ4]
ENSCJAG00000022564	NOVEL	protein_coding	ENSCJAG00000022564	chromosome:C_jacchus3.2.1:7:1:155834243:1	129415157	129415610	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041165}  [Source:UniProtKB/TrEMBL;Acc:F7DX01]
ENSCJAG00000018149	NOVEL	protein_coding	ENSCJAG00000018149	scaffold:C_jacchus3.2.1:GL286304.1:1:37372:1	21431	25017	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033577}  [Source:UniProtKB/TrEMBL;Acc:H9KXC8]
ENSCJAG00000013160	KNOWN_BY_PROJECTION	protein_coding	ANO6	chromosome:C_jacchus3.2.1:9:1:124281992:1	25822712	26040850	R	anoctamin 6 [Source:HGNC Symbol;Acc:HGNC:25240]
ENSCJAG00000020624	NOVEL	protein_coding	ENSCJAG00000020624	scaffold:C_jacchus3.2.1:ACFV01177533.1:1:21724:1	924	2193	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038333}  [Source:UniProtKB/TrEMBL;Acc:H9KXM0]
ENSCJAG00000021934	NOVEL	protein_coding	ENSCJAG00000021934	chromosome:C_jacchus3.2.1:14:1:108792865:1	23987681	23988028	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040618}  [Source:UniProtKB/TrEMBL;Acc:F7IE49]
ENSCJAG00000013534	NOVEL	protein_coding	ENSCJAG00000013534	scaffold:C_jacchus3.2.1:GL286319.1:1:30452:1	20797	23587	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024882}  [Source:UniProtKB/TrEMBL;Acc:H9KWZ9]
ENSCJAG00000022286	NOVEL	protein_coding	ENSCJAG00000022286	chromosome:C_jacchus3.2.1:14:1:108792865:1	21569125	21569492	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040933}  [Source:UniProtKB/TrEMBL;Acc:F7HXG2]
ENSCJAG00000007673	NOVEL	protein_coding	ENSCJAG00000007673	chromosome:C_jacchus3.2.1:14:1:108792865:1	17269596	17270455	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014217}  [Source:UniProtKB/TrEMBL;Acc:F7HVE9]
ENSCJAG00000021722	NOVEL	protein_coding	ENSCJAG00000021722	chromosome:C_jacchus3.2.1:14:1:108792865:1	5612985	5613776	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040434}  [Source:UniProtKB/TrEMBL;Acc:F7IBV1]
ENSCJAG00000005545	KNOWN_BY_PROJECTION	protein_coding	ZNF101	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	455429	458798	D	zinc finger protein 101 [Source:HGNC Symbol;Acc:HGNC:12881]
ENSCJAG00000010255	KNOWN_BY_PROJECTION	protein_coding	BLZF1	chromosome:C_jacchus3.2.1:18:1:47448759:1	37070823	37082685	R	basic leucine zipper nuclear factor 1 [Source:HGNC Symbol;Acc:HGNC:1065]
ENSCJAG00000032934	NOVEL	protein_coding	ENSCJAG00000032934	scaffold:C_jacchus3.2.1:ACFV01198177.1:1:2084:1	301	1935	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051565}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ8]
ENSCJAG00000033176	NOVEL	protein_coding	ENSCJAG00000033176	scaffold:C_jacchus3.2.1:ACFV01167737.1:1:19877:1	7867	14999	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042058}  [Source:UniProtKB/TrEMBL;Acc:H9KXY6]
ENSCJAG00000022201	NOVEL	processed_pseudogene	ENSCJAG00000022201	chromosome:C_jacchus3.2.1:4:1:171630274:1	105321818	105322336	D	<no descrition>
ENSCJAG00000007342	NOVEL	pseudogene	ENSCJAG00000007342	scaffold:C_jacchus3.2.1:GL290741.1:1:6023:1	4724	5193	D	<no descrition>
ENSCJAG00000033638	NOVEL	protein_coding	ENSCJAG00000033638	scaffold:C_jacchus3.2.1:GL289196.1:1:9087:1	7049	7503	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045094}  [Source:UniProtKB/TrEMBL;Acc:H9KY39]
ENSCJAG00000033424	NOVEL	processed_pseudogene	ENSCJAG00000033424	chromosome:C_jacchus3.2.1:4:1:171630274:1	83735001	83735486	D	<no descrition>
ENSCJAG00000017330	NOVEL	processed_pseudogene	ENSCJAG00000017330	chromosome:C_jacchus3.2.1:4:1:171630274:1	71564064	71564699	D	<no descrition>
ENSCJAG00000023353	NOVEL	processed_pseudogene	ENSCJAG00000023353	chromosome:C_jacchus3.2.1:4:1:171630274:1	44204108	44204587	R	<no descrition>
ENSCJAG00000022341	NOVEL	processed_pseudogene	ENSCJAG00000022341	chromosome:C_jacchus3.2.1:4:1:171630274:1	38179050	38179649	R	<no descrition>
ENSCJAG00000022497	KNOWN_BY_PROJECTION	protein_coding	ZNF22	chromosome:C_jacchus3.2.1:4:1:171630274:1	122169571	122170597	R	zinc finger protein 22 [Source:HGNC Symbol;Acc:HGNC:13012]
ENSCJAG00000003717	NOVEL	protein_coding	ENSCJAG00000003717	scaffold:C_jacchus3.2.1:GL285176.1:1:76252:1	2842	6118	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006734}  [Source:UniProtKB/TrEMBL;Acc:H9KW23]
ENSCJAG00000022498	NOVEL	protein_coding	ENSCJAG00000022498	chromosome:C_jacchus3.2.1:4:1:171630274:1	121677911	121678258	D	<no descrition>
ENSCJAG00000002059	NOVEL	protein_coding	ENSCJAG00000002059	scaffold:C_jacchus3.2.1:GL288289.1:1:10085:1	2117	3383	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003728}  [Source:UniProtKB/TrEMBL;Acc:H9KVR1]
ENSCJAG00000031964	NOVEL	protein_coding	ENSCJAG00000031964	scaffold:C_jacchus3.2.1:GL286251.1:1:61642:1	35083	36250	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046472}  [Source:UniProtKB/TrEMBL;Acc:H9KY67]
ENSCJAG00000032730	NOVEL	protein_coding	ENSCJAG00000032730	chromosome:C_jacchus3.2.1:4:1:171630274:1	110606799	110607347	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043277}  [Source:UniProtKB/TrEMBL;Acc:F7I827]
ENSCJAG00000004693	NOVEL	protein_coding	ENSCJAG00000004693	chromosome:C_jacchus3.2.1:4:1:171630274:1	113653963	113654307	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008505}  [Source:UniProtKB/TrEMBL;Acc:F7HYY9]
ENSCJAG00000022856	NOVEL	protein_coding	ENSCJAG00000022856	chromosome:C_jacchus3.2.1:4:1:171630274:1	106616462	106617317	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041427}  [Source:UniProtKB/TrEMBL;Acc:F7HFY1]
ENSCJAG00000031398	NOVEL	pseudogene	ENSCJAG00000031398	scaffold:C_jacchus3.2.1:ACFV01180769.1:1:12241:1	4485	4917	R	<no descrition>
ENSCJAG00000004953	NOVEL	pseudogene	ENSCJAG00000004953	scaffold:C_jacchus3.2.1:GL285482.1:1:11789:1	7652	7940	R	<no descrition>
ENSCJAG00000035097	NOVEL	protein_coding	ENSCJAG00000035097	scaffold:C_jacchus3.2.1:GL288711.1:1:15713:1	13016	13895	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029681}  [Source:UniProtKB/TrEMBL;Acc:H9KX66]
ENSCJAG00000018246	NOVEL	protein_coding	ENSCJAG00000018246	scaffold:C_jacchus3.2.1:GL286716.1:1:19295:1	55	4014	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033773}  [Source:UniProtKB/TrEMBL;Acc:H9KXD2]
ENSCJAG00000032418	NOVEL	protein_coding	ENSCJAG00000032418	chromosome:C_jacchus3.2.1:4:1:171630274:1	84760681	84761739	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044397}  [Source:UniProtKB/TrEMBL;Acc:F7F616]
ENSCJAG00000018852	NOVEL	protein_coding	ENSCJAG00000018852	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1060357	1061830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035004}  [Source:UniProtKB/TrEMBL;Acc:H9KXG4]
ENSCJAG00000022372	NOVEL	protein_coding	ENSCJAG00000022372	chromosome:C_jacchus3.2.1:4:1:171630274:1	70723675	70724241	R	Ribosomal protein L19 {ECO:0000256|RuleBase:RU000574}  [Source:UniProtKB/TrEMBL;Acc:F7FV65]
ENSCJAG00000013148	KNOWN	protein_coding	FBXW5	chromosome:C_jacchus3.2.1:9:1:124281992:1	25395622	25399430	R	F-box/WD repeat-containing protein 5 {ECO:0000313|EMBL:JAB05755.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024146}  [Source:UniProtKB/TrEMBL;Acc:F7DA50]
ENSCJAG00000018837	KNOWN_BY_PROJECTION	protein_coding	DHRS7B	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1048348	1063327	R	dehydrogenase/reductase (SDR family) member 7B [Source:HGNC Symbol;Acc:HGNC:24547]
ENSCJAG00000014285	NOVEL	pseudogene	ENSCJAG00000014285	scaffold:C_jacchus3.2.1:GL288653.1:1:15167:1	7959	8506	D	<no descrition>
ENSCJAG00000013145	NOVEL	protein_coding	ENSCJAG00000013145	chromosome:C_jacchus3.2.1:9:1:124281992:1	25323456	25324350	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024131}  [Source:UniProtKB/TrEMBL;Acc:F7DRL9]
ENSCJAG00000031202	NOVEL	protein_coding	ENSCJAG00000031202	scaffold:C_jacchus3.2.1:ACFV01177559.1:1:29430:1	4131	5646	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KY81]
ENSCJAG00000004247	NOVEL	pseudogene	ENSCJAG00000004247	scaffold:C_jacchus3.2.1:ACFV01178089.1:1:17821:1	9274	10856	R	<no descrition>
ENSCJAG00000009387	NOVEL	pseudogene	ENSCJAG00000009387	scaffold:C_jacchus3.2.1:GL288040.1:1:30779:1	16294	16858	R	<no descrition>
ENSCJAG00000013681	KNOWN_BY_PROJECTION	protein_coding	SPIDR	chromosome:C_jacchus3.2.1:16:1:96796970:1	74582	624893	D	scaffolding protein involved in DNA repair [Source:HGNC Symbol;Acc:HGNC:28971]
ENSCJAG00000032304	NOVEL	protein_coding	ENSCJAG00000032304	scaffold:C_jacchus3.2.1:ACFV01189825.1:1:5827:1	1928	5699	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020684}  [Source:UniProtKB/TrEMBL;Acc:H9KWT0]
ENSCJAG00000021962	NOVEL	protein_coding	ENSCJAG00000021962	chromosome:C_jacchus3.2.1:4:1:171630274:1	68098255	68099103	D	<no descrition>
ENSCJAG00000023312	NOVEL	protein_coding	ENSCJAG00000023312	chromosome:C_jacchus3.2.1:4:1:171630274:1	69514556	69514891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041818}  [Source:UniProtKB/TrEMBL;Acc:F7E958]
ENSCJAG00000005455	NOVEL	protein_coding	ENSCJAG00000005455	scaffold:C_jacchus3.2.1:GL286701.1:1:14667:1	4	7786	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009964}  [Source:UniProtKB/TrEMBL;Acc:H9KW76]
ENSCJAG00000013714	NOVEL	protein_coding	ENSCJAG00000013714	chromosome:C_jacchus3.2.1:16:1:96796970:1	23922	31844	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025210}  [Source:UniProtKB/TrEMBL;Acc:F6YZU9]
ENSCJAG00000033966	NOVEL	protein_coding	ENSCJAG00000033966	scaffold:C_jacchus3.2.1:GL286562.1:1:21302:1	14062	14651	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052359}  [Source:UniProtKB/TrEMBL;Acc:H9KYM8]
ENSCJAG00000021837	NOVEL	protein_coding	ENSCJAG00000021837	chromosome:C_jacchus3.2.1:4:1:171630274:1	61888982	61889338	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040538}  [Source:UniProtKB/TrEMBL;Acc:F7ITE4]
ENSCJAG00000021838	NOVEL	protein_coding	ENSCJAG00000021838	chromosome:C_jacchus3.2.1:4:1:171630274:1	59974230	59974725	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040539}  [Source:UniProtKB/TrEMBL;Acc:F7ITE2]
ENSCJAG00000019712	KNOWN_BY_PROJECTION	protein_coding	CREBBP	chromosome:C_jacchus3.2.1:12:1:121768101:1	3755674	3888493	R	CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
ENSCJAG00000004034	KNOWN_BY_PROJECTION	protein_coding	CLCNKA	scaffold:C_jacchus3.2.1:GL285266.1:1:12996:1	459	6980	D	chloride channel, voltage-sensitive Ka [Source:HGNC Symbol;Acc:HGNC:2026]
ENSCJAG00000019963	NOVEL	protein_coding	ENSCJAG00000019963	scaffold:C_jacchus3.2.1:ACFV01179358.1:1:15185:1	3707	5476	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037130}  [Source:UniProtKB/TrEMBL;Acc:H9KXJ8]
ENSCJAG00000021601	NOVEL	protein_coding	ENSCJAG00000021601	scaffold:C_jacchus3.2.1:GL285631.1:1:144671:1	75060	78443	D	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:H9KXN7]
ENSCJAG00000010246	KNOWN	protein_coding	CCDC181	chromosome:C_jacchus3.2.1:18:1:47448759:1	37009633	37061470	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018882}; Uncharacterized protein C1orf114 {ECO:0000313|EMBL:JAB15756.1}  [Source:UniProtKB/TrEMBL;Acc:F7HFY9]
ENSCJAG00000019693	KNOWN_BY_PROJECTION	protein_coding	TRAP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	3692544	3747958	R	TNF receptor-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16264]
ENSCJAG00000017240	KNOWN_BY_PROJECTION	protein_coding	EPX	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	441549	454118	D	eosinophil peroxidase [Source:HGNC Symbol;Acc:HGNC:3423]
ENSCJAG00000034882	NOVEL	protein_coding	ENSCJAG00000034882	chromosome:C_jacchus3.2.1:4:1:171630274:1	34361689	34362099	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7DXI9]
ENSCJAG00000037391	NOVEL	protein_coding	ENSCJAG00000037391	chromosome:C_jacchus3.2.1:4:1:171630274:1	31241462	31241800	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052480}  [Source:UniProtKB/TrEMBL;Acc:F7I029]
ENSCJAG00000000401	NOVEL	protein_coding	ENSCJAG00000000401	chromosome:C_jacchus3.2.1:16:1:96796970:1	18284	19318	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000679}  [Source:UniProtKB/TrEMBL;Acc:F6PZ04]
ENSCJAG00000011410	NOVEL	protein_coding	ENSCJAG00000011410	scaffold:C_jacchus3.2.1:GL286030.1:1:18161:1	6976	17521	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020981}  [Source:UniProtKB/TrEMBL;Acc:H9KWU3]
ENSCJAG00000022591	KNOWN_BY_PROJECTION	protein_coding	FAM136A	chromosome:C_jacchus3.2.1:4:1:171630274:1	25843074	25843490	R	family with sequence similarity 136, member A [Source:HGNC Symbol;Acc:HGNC:25911]
ENSCJAG00000032390	NOVEL	processed_pseudogene	ENSCJAG00000032390	chromosome:C_jacchus3.2.1:6:1:158406734:1	21793269	21793958	D	<no descrition>
ENSCJAG00000023264	NOVEL	processed_pseudogene	ENSCJAG00000023264	chromosome:C_jacchus3.2.1:6:1:158406734:1	14101336	14101971	D	<no descrition>
ENSCJAG00000031370	NOVEL	processed_pseudogene	ENSCJAG00000031370	chromosome:C_jacchus3.2.1:6:1:158406734:1	10307216	10307293	D	<no descrition>
ENSCJAG00000021825	NOVEL	processed_pseudogene	ENSCJAG00000021825	chromosome:C_jacchus3.2.1:6:1:158406734:1	2812019	2812516	R	<no descrition>
ENSCJAG00000022803	NOVEL	processed_pseudogene	ENSCJAG00000022803	chromosome:C_jacchus3.2.1:8:1:128169293:1	111770708	111771970	R	<no descrition>
ENSCJAG00000022003	NOVEL	processed_pseudogene	ENSCJAG00000022003	chromosome:C_jacchus3.2.1:8:1:128169293:1	99603422	99603895	D	<no descrition>
ENSCJAG00000022004	NOVEL	processed_pseudogene	ENSCJAG00000022004	chromosome:C_jacchus3.2.1:8:1:128169293:1	96644352	96644831	D	<no descrition>
ENSCJAG00000013933	NOVEL	protein_coding	ENSCJAG00000013933	scaffold:C_jacchus3.2.1:GL285768.1:1:126350:1	77564	97222	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025745}  [Source:UniProtKB/TrEMBL;Acc:H9KX22]
ENSCJAG00000022324	NOVEL	processed_pseudogene	ENSCJAG00000022324	chromosome:C_jacchus3.2.1:8:1:128169293:1	86715269	86716396	D	<no descrition>
ENSCJAG00000022325	NOVEL	processed_pseudogene	ENSCJAG00000022325	chromosome:C_jacchus3.2.1:8:1:128169293:1	86007610	86007864	R	<no descrition>
ENSCJAG00000022990	NOVEL	processed_pseudogene	ENSCJAG00000022990	chromosome:C_jacchus3.2.1:8:1:128169293:1	75050878	75051534	D	<no descrition>
ENSCJAG00000021932	NOVEL	protein_coding	ENSCJAG00000021932	chromosome:C_jacchus3.2.1:6:1:158406734:1	7109250	7109730	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040616}  [Source:UniProtKB/TrEMBL;Acc:F7IE52]
ENSCJAG00000013567	NOVEL	protein_coding	ENSCJAG00000013567	scaffold:C_jacchus3.2.1:ACFV01196242.1:1:2261:1	502	2260	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024944}  [Source:UniProtKB/TrEMBL;Acc:H9KX03]
ENSCJAG00000022162	KNOWN_BY_PROJECTION	protein_coding	MKRN3	chromosome:C_jacchus3.2.1:6:1:158406734:1	346869	349587	D	makorin ring finger protein 3 [Source:HGNC Symbol;Acc:HGNC:7114]
ENSCJAG00000031122	NOVEL	protein_coding	ENSCJAG00000031122	scaffold:C_jacchus3.2.1:ACFV01193886.1:1:5848:1	4345	5631	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036191}  [Source:UniProtKB/TrEMBL;Acc:H9KXI7]
ENSCJAG00000013099	KNOWN_BY_PROJECTION	protein_coding	ARID2	chromosome:C_jacchus3.2.1:9:1:124281992:1	25203143	25402724	R	AT rich interactive domain 2 (ARID, RFX-like) [Source:HGNC Symbol;Acc:HGNC:18037]
ENSCJAG00000000208	NOVEL	protein_coding	ENSCJAG00000000208	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	165468	167181	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051313}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ2]
ENSCJAG00000022129	NOVEL	protein_coding	ENSCJAG00000022129	scaffold:C_jacchus3.2.1:GL286878.1:1:8791:1	838	1776	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040788}  [Source:UniProtKB/TrEMBL;Acc:H9KXR2]
ENSCJAG00000022153	NOVEL	protein_coding	ENSCJAG00000022153	scaffold:C_jacchus3.2.1:GL286114.1:1:11107:1	231	968	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049524}  [Source:UniProtKB/TrEMBL;Acc:H9KYE5]
ENSCJAG00000000207	NOVEL	pseudogene	ENSCJAG00000000207	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	163841	164718	D	<no descrition>
ENSCJAG00000031677	NOVEL	protein_coding	ENSCJAG00000031677	scaffold:C_jacchus3.2.1:ACFV01184652.1:1:10854:1	10119	10415	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051206}  [Source:UniProtKB/TrEMBL;Acc:H9KYI7]
ENSCJAG00000023241	NOVEL	protein_coding	ENSCJAG00000023241	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	378022	378480	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041755}  [Source:UniProtKB/TrEMBL;Acc:H9KXW7]
ENSCJAG00000013418	NOVEL	protein_coding	ENSCJAG00000013418	scaffold:C_jacchus3.2.1:ACFV01177895.1:1:15863:1	4692	5891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024650}  [Source:UniProtKB/TrEMBL;Acc:H9KWZ8]
ENSCJAG00000022123	KNOWN	protein_coding	KCND2	chromosome:C_jacchus3.2.1:8:1:128169293:1	126129327	126130445	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040782}  [Source:UniProtKB/TrEMBL;Acc:F7IQS8]
ENSCJAG00000000245	KNOWN_BY_PROJECTION	protein_coding	SEPHS2	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	359244	360287	R	selenophosphate synthetase 2 [Source:HGNC Symbol;Acc:HGNC:19686]
ENSCJAG00000021941	NOVEL	protein_coding	CAJA-T2R16	chromosome:C_jacchus3.2.1:8:1:128169293:1	123246977	123247975	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7IE10]
ENSCJAG00000032161	NOVEL	protein_coding	ENSCJAG00000032161	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	338712	347779	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000403}  [Source:UniProtKB/TrEMBL;Acc:H9KVJ8]
ENSCJAG00000009914	NOVEL	protein_coding	ENSCJAG00000009914	scaffold:C_jacchus3.2.1:ACFV01190245.1:1:5226:1	2	1711	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018196}  [Source:UniProtKB/TrEMBL;Acc:H9KWM5]
ENSCJAG00000015446	NOVEL	protein_coding	ENSCJAG00000015446	scaffold:C_jacchus3.2.1:GL284838.1:1:27919:1	972	1854	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028442}  [Source:UniProtKB/TrEMBL;Acc:H9KX48]
ENSCJAG00000015445	NOVEL	protein_coding	ENSCJAG00000015445	scaffold:C_jacchus3.2.1:GL284838.1:1:27919:1	2867	3340	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028439}  [Source:UniProtKB/TrEMBL;Acc:H9KX47]
ENSCJAG00000010588	KNOWN_BY_PROJECTION	protein_coding	PAK1IP1	scaffold:C_jacchus3.2.1:GL285012.1:1:63008:1	4213	16540	D	PAK1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20882]
ENSCJAG00000032387	NOVEL	protein_coding	ENSCJAG00000032387	chromosome:C_jacchus3.2.1:8:1:128169293:1	114491040	114491510	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044625}  [Source:UniProtKB/TrEMBL;Acc:F7DIP6]
ENSCJAG00000013594	KNOWN_BY_PROJECTION	protein_coding	HNF1A	scaffold:C_jacchus3.2.1:GL285375.1:1:56056:1	5901	11246	D	HNF1 homeobox A [Source:HGNC Symbol;Acc:HGNC:11621]
ENSCJAG00000022784	NOVEL	protein_coding	ENSCJAG00000022784	chromosome:C_jacchus3.2.1:8:1:128169293:1	107643051	107643778	D	Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}  [Source:UniProtKB/TrEMBL;Acc:F7ENV4]
ENSCJAG00000022789	NOVEL	protein_coding	ENSCJAG00000022789	chromosome:C_jacchus3.2.1:8:1:128169293:1	104252578	104253522	R	<no descrition>
ENSCJAG00000011133	NOVEL	protein_coding	ENSCJAG00000011133	scaffold:C_jacchus3.2.1:GL285012.1:1:63008:1	39177	62797	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020550}  [Source:UniProtKB/TrEMBL;Acc:H9KWS4]
ENSCJAG00000009530	NOVEL	protein_coding	ENSCJAG00000009530	chromosome:C_jacchus3.2.1:8:1:128169293:1	103118680	103119465	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017449}  [Source:UniProtKB/TrEMBL;Acc:F7HW09]
ENSCJAG00000021984	NOVEL	protein_coding	CAJA-T2R40	chromosome:C_jacchus3.2.1:8:1:128169293:1	102962441	102963479	R	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I729]
ENSCJAG00000031227	NOVEL	protein_coding	ENSCJAG00000031227	chromosome:C_jacchus3.2.1:8:1:128169293:1	102747891	102748775	R	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F6W1X1]
ENSCJAG00000021989	NOVEL	protein_coding	ENSCJAG00000021989	chromosome:C_jacchus3.2.1:8:1:128169293:1	99534282	99534473	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040668}  [Source:UniProtKB/TrEMBL;Acc:F7I721]
ENSCJAG00000021990	NOVEL	protein_coding	ENSCJAG00000021990	chromosome:C_jacchus3.2.1:8:1:128169293:1	99293102	99293844	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040669}  [Source:UniProtKB/TrEMBL;Acc:F7I719]
ENSCJAG00000004065	NOVEL	protein_coding	ENSCJAG00000004065	scaffold:C_jacchus3.2.1:GL285974.1:1:7512:1	1126	4627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007378}  [Source:UniProtKB/TrEMBL;Acc:H9KW35]
ENSCJAG00000032655	NOVEL	protein_coding	ENSCJAG00000032655	chromosome:C_jacchus3.2.1:8:1:128169293:1	99060339	99060485	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046548}  [Source:UniProtKB/TrEMBL;Acc:F7I3T2]
ENSCJAG00000003094	NOVEL	protein_coding	ENSCJAG00000003094	scaffold:C_jacchus3.2.1:GL286343.1:1:20416:1	12226	15019	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005607}  [Source:UniProtKB/TrEMBL;Acc:H9KVZ4]
ENSCJAG00000021999	NOVEL	processed_pseudogene	ENSCJAG00000021999	chromosome:C_jacchus3.2.1:11:1:130397257:1	78568110	78568439	R	<no descrition>
ENSCJAG00000022250	NOVEL	processed_pseudogene	ENSCJAG00000022250	chromosome:C_jacchus3.2.1:11:1:130397257:1	71136131	71137549	D	<no descrition>
ENSCJAG00000022676	KNOWN_BY_PROJECTION	protein_coding	OR9G4	chromosome:C_jacchus3.2.1:11:1:130397257:1	112700485	112701471	R	olfactory receptor, family 9, subfamily G, member 4 [Source:HGNC Symbol;Acc:HGNC:15322]
ENSCJAG00000011194	NOVEL	protein_coding	ENSCJAG00000011194	chromosome:C_jacchus3.2.1:8:1:128169293:1	89187468	89187722	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020617}  [Source:UniProtKB/TrEMBL;Acc:F7F4S9]
ENSCJAG00000022678	KNOWN_BY_PROJECTION	protein_coding	OR9G1	chromosome:C_jacchus3.2.1:11:1:130397257:1	112669828	112670748	D	olfactory receptor, family 9, subfamily G, member 1 [Source:HGNC Symbol;Acc:HGNC:15319]
ENSCJAG00000019656	KNOWN_BY_PROJECTION	protein_coding	CLUAP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	3517355	3555429	D	clusterin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19009]
ENSCJAG00000000578	KNOWN	protein_coding	PTGIS	scaffold:C_jacchus3.2.1:GL285123.1:1:137040:1	42610	75603	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001021}  [Source:UniProtKB/TrEMBL;Acc:H9KVL7]
ENSCJAG00000022679	NOVEL	protein_coding	ENSCJAG00000022679	chromosome:C_jacchus3.2.1:11:1:130397257:1	112655129	112656061	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5T7]
ENSCJAG00000022991	NOVEL	protein_coding	ENSCJAG00000022991	chromosome:C_jacchus3.2.1:8:1:128169293:1	76286529	76287323	R	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7FTX6]
ENSCJAG00000019865	NOVEL	pseudogene	ENSCJAG00000019865	scaffold:C_jacchus3.2.1:ACFV01202456.1:1:2118:1	1808	2116	R	<no descrition>
ENSCJAG00000022684	NOVEL	protein_coding	ENSCJAG00000022684	chromosome:C_jacchus3.2.1:11:1:130397257:1	112454622	112455545	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5S9]
ENSCJAG00000033745	NOVEL	protein_coding	ENSCJAG00000033745	scaffold:C_jacchus3.2.1:GL288716.1:1:13974:1	7757	8326	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042387}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ3]
ENSCJAG00000014064	NOVEL	protein_coding	ENSCJAG00000014064	scaffold:C_jacchus3.2.1:ACFV01196750.1:1:4333:1	2671	3709	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025850}  [Source:UniProtKB/TrEMBL;Acc:H9KX25]
ENSCJAG00000034800	NOVEL	protein_coding	ENSCJAG00000034800	scaffold:C_jacchus3.2.1:GL286406.1:1:12374:1	3049	3494	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042332}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ1]
ENSCJAG00000011976	NOVEL	protein_coding	ENSCJAG00000011976	scaffold:C_jacchus3.2.1:GL285021.1:1:269126:1	193080	194042	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021979}  [Source:UniProtKB/TrEMBL;Acc:H9KWV6]
ENSCJAG00000001792	NOVEL	protein_coding	ENSCJAG00000001792	scaffold:C_jacchus3.2.1:GL286260.1:1:38501:1	23921	24336	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003197}  [Source:UniProtKB/TrEMBL;Acc:H9KVP7]
ENSCJAG00000033347	NOVEL	protein_coding	ENSCJAG00000033347	scaffold:C_jacchus3.2.1:GL285460.1:1:31735:1	16700	23236	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015902}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ0]
ENSCJAG00000009152	KNOWN_BY_PROJECTION	protein_coding	OR8K1	chromosome:C_jacchus3.2.1:11:1:130397257:1	112354731	112355690	D	olfactory receptor, family 8, subfamily K, member 1 [Source:HGNC Symbol;Acc:HGNC:14831]
ENSCJAG00000032428	NOVEL	processed_pseudogene	ENSCJAG00000032428	chromosome:C_jacchus3.2.1:12:1:121768101:1	12210511	12210861	D	<no descrition>
ENSCJAG00000023050	NOVEL	processed_pseudogene	ENSCJAG00000023050	chromosome:C_jacchus3.2.1:9:1:124281992:1	124247732	124248091	R	<no descrition>
ENSCJAG00000022252	NOVEL	processed_pseudogene	ENSCJAG00000022252	chromosome:C_jacchus3.2.1:9:1:124281992:1	118755724	118756095	D	<no descrition>
ENSCJAG00000031978	NOVEL	processed_pseudogene	ENSCJAG00000031978	chromosome:C_jacchus3.2.1:9:1:124281992:1	100817176	100817484	D	<no descrition>
ENSCJAG00000031703	KNOWN_BY_PROJECTION	protein_coding	OR8J2	chromosome:C_jacchus3.2.1:11:1:130397257:1	112239615	112240562	R	olfactory receptor, family 8, subfamily J, member 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:15311]
ENSCJAG00000014150	NOVEL	protein_coding	ENSCJAG00000014150	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	511992	512277	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026009}  [Source:UniProtKB/TrEMBL;Acc:H9KX26]
ENSCJAG00000022102	NOVEL	processed_pseudogene	ENSCJAG00000022102	chromosome:C_jacchus3.2.1:9:1:124281992:1	92337249	92337728	R	<no descrition>
ENSCJAG00000012288	NOVEL	protein_coding	ENSCJAG00000012288	scaffold:C_jacchus3.2.1:ACFV01183769.1:1:10165:1	2917	3361	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047496}  [Source:UniProtKB/TrEMBL;Acc:H9KY97]
ENSCJAG00000031766	NOVEL	processed_pseudogene	ENSCJAG00000031766	chromosome:C_jacchus3.2.1:9:1:124281992:1	79856904	79857614	R	<no descrition>
ENSCJAG00000022686	KNOWN_BY_PROJECTION	protein_coding	OR8J3	chromosome:C_jacchus3.2.1:11:1:130397257:1	112212504	112213451	R	olfactory receptor, family 8, subfamily J, member 3 [Source:HGNC Symbol;Acc:HGNC:15312]
ENSCJAG00000022447	NOVEL	processed_pseudogene	ENSCJAG00000022447	chromosome:C_jacchus3.2.1:9:1:124281992:1	45639097	45639555	D	<no descrition>
ENSCJAG00000022687	NOVEL	protein_coding	ENSCJAG00000022687	chromosome:C_jacchus3.2.1:11:1:130397257:1	112195637	112196673	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5S4]
ENSCJAG00000022485	NOVEL	protein_coding	ENSCJAG00000022485	chromosome:C_jacchus3.2.1:12:1:121768101:1	29009420	29010058	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041098}  [Source:UniProtKB/TrEMBL;Acc:F7FG74]
ENSCJAG00000022688	NOVEL	protein_coding	ENSCJAG00000022688	chromosome:C_jacchus3.2.1:11:1:130397257:1	112149010	112149783	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5S2]
ENSCJAG00000002333	KNOWN	protein_coding	SMDT1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	241796	245557	R	UPF0466 protein C22orf32, mitochondrial {ECO:0000313|EMBL:JAB06311.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004208}  [Source:UniProtKB/TrEMBL;Acc:H9KVS5]
ENSCJAG00000020447	NOVEL	pseudogene	ENSCJAG00000020447	scaffold:C_jacchus3.2.1:GL286299.1:1:24304:1	10344	11440	D	<no descrition>
ENSCJAG00000014519	NOVEL	protein_coding	ENSCJAG00000014519	chromosome:C_jacchus3.2.1:11:1:130397257:1	112059792	112060733	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7IN94]
ENSCJAG00000033428	KNOWN_BY_PROJECTION	protein_coding	RAD50	scaffold:C_jacchus3.2.1:ACFV01177304.1:1:32966:1	2835	32583	R	RAD50 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:9816]
ENSCJAG00000019645	KNOWN	protein_coding	NAA60	chromosome:C_jacchus3.2.1:12:1:121768101:1	3466930	3506293	D	N-alpha-acetyltransferase 60 {ECO:0000313|EMBL:JAB06901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036476}  [Source:UniProtKB/TrEMBL;Acc:F7HIN4]
ENSCJAG00000034595	NOVEL	protein_coding	ENSCJAG00000034595	chromosome:C_jacchus3.2.1:11:1:130397257:1	112053507	112054433	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7AFD9]
ENSCJAG00000022692	KNOWN_BY_PROJECTION	protein_coding	OR5D14	chromosome:C_jacchus3.2.1:11:1:130397257:1	111991121	111992065	D	olfactory receptor, family 5, subfamily D, member 14 [Source:HGNC Symbol;Acc:HGNC:15281]
ENSCJAG00000033509	KNOWN_BY_PROJECTION	protein_coding	OR4C6	chromosome:C_jacchus3.2.1:11:1:130397257:1	111824631	111825566	D	olfactory receptor, family 4, subfamily C, member 6 [Source:HGNC Symbol;Acc:HGNC:14743]
ENSCJAG00000020507	NOVEL	protein_coding	ENSCJAG00000020507	scaffold:C_jacchus3.2.1:GL286436.1:1:399530:1	294629	295987	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038106}  [Source:UniProtKB/TrEMBL;Acc:H9KXL4]
ENSCJAG00000023120	KNOWN	protein_coding	CLDN6	chromosome:C_jacchus3.2.1:12:1:121768101:1	3045178	3045840	R	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:F7CV25]
ENSCJAG00000019642	KNOWN	protein_coding	ZNF174	chromosome:C_jacchus3.2.1:12:1:121768101:1	3419992	3429232	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036456}; Zinc finger protein 174 isoform a {ECO:0000313|EMBL:JAB02344.1}  [Source:UniProtKB/TrEMBL;Acc:F7D7N3]
ENSCJAG00000001476	NOVEL	protein_coding	ENSCJAG00000001476	scaffold:C_jacchus3.2.1:GL286439.1:1:356043:1	176443	177117	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002639}  [Source:UniProtKB/TrEMBL;Acc:H9KVP2]
ENSCJAG00000018965	NOVEL	pseudogene	ENSCJAG00000018965	scaffold:C_jacchus3.2.1:GL284992.1:1:27884:1	1051	1594	D	<no descrition>
ENSCJAG00000013545	NOVEL	protein_coding	ENSCJAG00000013545	scaffold:C_jacchus3.2.1:ACFV01201214.1:1:2327:1	304	846	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024898}  [Source:UniProtKB/TrEMBL;Acc:H9KX00]
ENSCJAG00000000005	NOVEL	protein_coding	ENSCJAG00000000005	scaffold:C_jacchus3.2.1:ACFV01186727.1:1:9420:1	4863	9407	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000007}  [Source:UniProtKB/TrEMBL;Acc:H9KVJ0]
ENSCJAG00000021761	NOVEL	protein_coding	ENSCJAG00000021761	chromosome:C_jacchus3.2.1:11:1:130397257:1	110869599	110870145	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037533}  [Source:UniProtKB/TrEMBL;Acc:F6XSV5]
ENSCJAG00000032544	KNOWN_BY_PROJECTION	protein_coding	HMSD	scaffold:C_jacchus3.2.1:GL285049.1:1:9241:1	123	4823	R	histocompatibility (minor) serpin domain containing [Source:HGNC Symbol;Acc:HGNC:23037]
ENSCJAG00000022807	KNOWN_BY_PROJECTION	protein_coding	FZD10	chromosome:C_jacchus3.2.1:9:1:124281992:1	121190000	121191816	D	frizzled class receptor 10 [Source:HGNC Symbol;Acc:HGNC:4039]
ENSCJAG00000019625	KNOWN_BY_PROJECTION	protein_coding	ZSCAN32	chromosome:C_jacchus3.2.1:12:1:121768101:1	3397976	3419789	R	zinc finger and SCAN domain containing 32 [Source:HGNC Symbol;Acc:HGNC:20812]
ENSCJAG00000034018	NOVEL	protein_coding	ENSCJAG00000034018	chromosome:C_jacchus3.2.1:11:1:130397257:1	109697568	109698373	R	<no descrition>
ENSCJAG00000036662	KNOWN_BY_PROJECTION	protein_coding	ZNF75A	chromosome:C_jacchus3.2.1:12:1:121768101:1	3345987	3360239	D	zinc finger protein 75a [Source:HGNC Symbol;Acc:HGNC:13146]
ENSCJAG00000016285	KNOWN_BY_PROJECTION	protein_coding	SYNGR1	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	66076	69744	D	synaptogyrin 1 [Source:HGNC Symbol;Acc:HGNC:11498]
ENSCJAG00000019621	KNOWN_BY_PROJECTION	protein_coding	TIGD7	chromosome:C_jacchus3.2.1:12:1:121768101:1	3330205	3341689	R	tigger transposable element derived 7 [Source:HGNC Symbol;Acc:HGNC:18331]
ENSCJAG00000007658	NOVEL	protein_coding	ENSCJAG00000007658	scaffold:C_jacchus3.2.1:GL284942.1:1:123787:1	120530	120962	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014188}  [Source:UniProtKB/TrEMBL;Acc:H9KWF6]
ENSCJAG00000019612	KNOWN_BY_PROJECTION	protein_coding	ZNF263	chromosome:C_jacchus3.2.1:12:1:121768101:1	3309276	3331074	D	zinc finger protein 263 [Source:HGNC Symbol;Acc:HGNC:13056]
ENSCJAG00000007649	NOVEL	protein_coding	ENSCJAG00000007649	scaffold:C_jacchus3.2.1:GL284942.1:1:123787:1	115547	117223	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014185}  [Source:UniProtKB/TrEMBL;Acc:H9KWF5]
ENSCJAG00000007647	NOVEL	pseudogene	ENSCJAG00000007647	scaffold:C_jacchus3.2.1:GL284942.1:1:123787:1	55018	55873	D	<no descrition>
ENSCJAG00000009313	KNOWN_BY_PROJECTION	protein_coding	B4GALT2	scaffold:C_jacchus3.2.1:ACFV01184846.1:1:16312:1	12804	14685	D	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:925]
ENSCJAG00000011371	KNOWN	protein_coding	C11ORF96	chromosome:C_jacchus3.2.1:11:1:130397257:1	107089112	107090440	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020911}; Uncharacterized protein C11orf96 {ECO:0000313|EMBL:JAB13906.1}  [Source:UniProtKB/TrEMBL;Acc:F7HB94]
ENSCJAG00000033779	NOVEL	protein_coding	ENSCJAG00000033779	chromosome:C_jacchus3.2.1:9:1:124281992:1	113568771	113569142	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042195}  [Source:UniProtKB/TrEMBL;Acc:F6ULH5]
ENSCJAG00000021799	NOVEL	protein_coding	ENSCJAG00000021799	chromosome:C_jacchus3.2.1:9:1:124281992:1	113332907	113333496	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040504}  [Source:UniProtKB/TrEMBL;Acc:F7HVA5]
ENSCJAG00000022761	NOVEL	protein_coding	ENSCJAG00000022761	chromosome:C_jacchus3.2.1:9:1:124281992:1	102478191	102478673	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041344}  [Source:UniProtKB/TrEMBL;Acc:F7F2L5]
ENSCJAG00000017234	NOVEL	pseudogene	ENSCJAG00000017234	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	312388	312867	R	<no descrition>
ENSCJAG00000009176	NOVEL	protein_coding	ENSCJAG00000009176	chromosome:C_jacchus3.2.1:9:1:124281992:1	100767446	100768345	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016811}  [Source:UniProtKB/TrEMBL;Acc:F6YKA8]
ENSCJAG00000019182	KNOWN_BY_PROJECTION	protein_coding	GCM2	scaffold:C_jacchus3.2.1:GL286648.1:1:17270:1	9406	13592	R	glial cells missing homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:4198]
ENSCJAG00000009847	KNOWN_BY_PROJECTION	protein_coding	FAM222A	chromosome:C_jacchus3.2.1:9:1:124281992:1	99902982	99904319	D	family with sequence similarity 222, member A [Source:HGNC Symbol;Acc:HGNC:25915]
ENSCJAG00000023251	KNOWN	protein_coding	FANCF	chromosome:C_jacchus3.2.1:11:1:130397257:1	85997523	85999192	R	Fanconi anemia group F protein {ECO:0000313|EMBL:JAB04479.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041765}  [Source:UniProtKB/TrEMBL;Acc:F7FT80]
ENSCJAG00000022094	KNOWN	protein_coding	TMEM119	chromosome:C_jacchus3.2.1:9:1:124281992:1	98678461	98678547	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040758}  [Source:UniProtKB/TrEMBL;Acc:F7IT83]
ENSCJAG00000034624	NOVEL	protein_coding	ENSCJAG00000034624	chromosome:C_jacchus3.2.1:11:1:130397257:1	85672059	85672523	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049646}  [Source:UniProtKB/TrEMBL;Acc:F6ZEH3]
ENSCJAG00000022093	NOVEL	protein_coding	ENSCJAG00000022093	chromosome:C_jacchus3.2.1:9:1:124281992:1	93936817	93937608	R	40S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116}  [Source:UniProtKB/TrEMBL;Acc:F7IT85]
ENSCJAG00000009266	KNOWN_BY_PROJECTION	protein_coding	DPH2	scaffold:C_jacchus3.2.1:ACFV01184846.1:1:16312:1	2852	6235	D	DPH2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:3004]
ENSCJAG00000021961	NOVEL	protein_coding	ENSCJAG00000021961	chromosome:C_jacchus3.2.1:11:1:130397257:1	77192991	77193545	R	<no descrition>
ENSCJAG00000022272	KNOWN	protein_coding	PRPS1	chromosome:C_jacchus3.2.1:9:1:124281992:1	76000234	76002358	D	Ribose-phosphate pyrophosphokinase 1 isoform 1 {ECO:0000313|EMBL:JAB03016.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040919}  [Source:UniProtKB/TrEMBL;Acc:F7HZU6]
ENSCJAG00000019582	KNOWN_BY_PROJECTION	protein_coding	MEFV	chromosome:C_jacchus3.2.1:12:1:121768101:1	3288233	3304595	R	Mediterranean fever [Source:HGNC Symbol;Acc:HGNC:6998]
ENSCJAG00000023387	KNOWN	protein_coding	ATXN7L3B	chromosome:C_jacchus3.2.1:9:1:124281992:1	64243439	64247112	D	Putative ataxin-7-like protein 3B {ECO:0000313|EMBL:JAB08634.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041883}  [Source:UniProtKB/TrEMBL;Acc:F7HF65]
ENSCJAG00000022241	KNOWN_BY_PROJECTION	protein_coding	OR2D3	chromosome:C_jacchus3.2.1:11:1:130397257:1	70321509	70322566	D	olfactory receptor, family 2, subfamily D, member 3 [Source:HGNC Symbol;Acc:HGNC:15146]
ENSCJAG00000023389	KNOWN_BY_PROJECTION	protein_coding	LRRC10	chromosome:C_jacchus3.2.1:9:1:124281992:1	59133515	59136098	R	leucine rich repeat containing 10 [Source:HGNC Symbol;Acc:HGNC:20264]
ENSCJAG00000009312	NOVEL	pseudogene	ENSCJAG00000009312	scaffold:C_jacchus3.2.1:GL288335.1:1:22526:1	8711	9754	R	<no descrition>
ENSCJAG00000033941	NOVEL	protein_coding	ENSCJAG00000033941	scaffold:C_jacchus3.2.1:ACFV01199853.1:1:2448:1	1521	1967	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047759}  [Source:UniProtKB/TrEMBL;Acc:H9KYA6]
ENSCJAG00000002594	KNOWN_BY_PROJECTION	protein_coding	ATF4	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	892025	894145	D	activating transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:786]
ENSCJAG00000002588	KNOWN_BY_PROJECTION	protein_coding	MIEF1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	882989	886641	D	mitochondrial elongation factor 1 [Source:HGNC Symbol;Acc:HGNC:25979]
ENSCJAG00000010174	KNOWN_BY_PROJECTION	protein_coding	SELL	chromosome:C_jacchus3.2.1:18:1:47448759:1	36771755	36791119	D	selectin L [Source:HGNC Symbol;Acc:HGNC:10720]
ENSCJAG00000011222	NOVEL	protein_coding	ENSCJAG00000011222	scaffold:C_jacchus3.2.1:GL288750.1:1:13174:1	2967	10807	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020681}  [Source:UniProtKB/TrEMBL;Acc:H9KWS9]
ENSCJAG00000031736	NOVEL	protein_coding	ENSCJAG00000031736	scaffold:C_jacchus3.2.1:GL286637.1:1:16462:1	3577	5059	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018325}  [Source:UniProtKB/TrEMBL;Acc:H9KWM9]
ENSCJAG00000022587	KNOWN_BY_PROJECTION	protein_coding	OR2AP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	44375983	44376912	D	olfactory receptor, family 2, subfamily AP, member 1 [Source:HGNC Symbol;Acc:HGNC:15335]
ENSCJAG00000023418	NOVEL	processed_pseudogene	ENSCJAG00000023418	chromosome:C_jacchus3.2.1:4:1:171630274:1	9025498	9025899	R	<no descrition>
ENSCJAG00000022402	NOVEL	processed_pseudogene	ENSCJAG00000022402	chromosome:C_jacchus3.2.1:X:1:142054208:1	128845346	128845825	D	<no descrition>
ENSCJAG00000032679	NOVEL	processed_pseudogene	ENSCJAG00000032679	chromosome:C_jacchus3.2.1:X:1:142054208:1	117221448	117221732	R	<no descrition>
ENSCJAG00000011180	KNOWN	protein_coding	HIST1H2BJ	chromosome:C_jacchus3.2.1:4:1:171630274:1	1688217	1688679	D	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F6SJY3]
ENSCJAG00000022438	NOVEL	protein_coding	ENSCJAG00000022438	chromosome:C_jacchus3.2.1:4:1:171630274:1	1672090	1672526	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7FGJ6]
ENSCJAG00000033232	NOVEL	protein_coding	ENSCJAG00000033232	chromosome:C_jacchus3.2.1:4:1:171630274:1	1595695	1595898	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042526}  [Source:UniProtKB/TrEMBL;Acc:F6WUH6]
ENSCJAG00000022439	KNOWN_BY_PROJECTION	protein_coding	ZNF391	chromosome:C_jacchus3.2.1:4:1:171630274:1	1481626	1482702	R	zinc finger protein 391 [Source:HGNC Symbol;Acc:HGNC:18779]
ENSCJAG00000012615	NOVEL	protein_coding	ENSCJAG00000012615	chromosome:C_jacchus3.2.1:4:1:171630274:1	967509	968432	R	<no descrition>
ENSCJAG00000023008	KNOWN	protein_coding	COX20	chromosome:C_jacchus3.2.1:4:1:171630274:1	342221	342541	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041554}  [Source:UniProtKB/TrEMBL;Acc:F7FTH9]
ENSCJAG00000023009	KNOWN_BY_PROJECTION	protein_coding	OR2W1	chromosome:C_jacchus3.2.1:4:1:171630274:1	76749	77711	D	olfactory receptor, family 2, subfamily W, member 1 [Source:HGNC Symbol;Acc:HGNC:8281]
ENSCJAG00000005755	KNOWN_BY_PROJECTION	protein_coding	SUGP1	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	41364	68352	R	SURP and G patch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18643]
ENSCJAG00000015546	KNOWN_BY_PROJECTION	protein_coding	ZNF205	chromosome:C_jacchus3.2.1:12:1:121768101:1	3156069	3164104	D	zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
ENSCJAG00000010133	KNOWN_BY_PROJECTION	protein_coding	SELE	chromosome:C_jacchus3.2.1:18:1:47448759:1	36752731	36764548	D	selectin E [Source:HGNC Symbol;Acc:HGNC:10718]
ENSCJAG00000022732	KNOWN_BY_PROJECTION	protein_coding	METTL18	chromosome:C_jacchus3.2.1:18:1:47448759:1	36683067	36685523	D	methyltransferase like 18 [Source:HGNC Symbol;Acc:HGNC:28793]
ENSCJAG00000015080	NOVEL	protein_coding	ENSCJAG00000015080	scaffold:C_jacchus3.2.1:GL286628.1:1:25766:1	19915	20995	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044546}  [Source:UniProtKB/TrEMBL;Acc:H9KY28]
ENSCJAG00000033319	NOVEL	protein_coding	ENSCJAG00000033319	scaffold:C_jacchus3.2.1:ACFV01176866.1:1:34792:1	577	1947	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040888}  [Source:UniProtKB/TrEMBL;Acc:H9KXS0]
ENSCJAG00000032431	NOVEL	protein_coding	ENSCJAG00000032431	scaffold:C_jacchus3.2.1:GL285662.1:1:4406:1	420	1256	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049050}  [Source:UniProtKB/TrEMBL;Acc:H9KYD1]
ENSCJAG00000022810	NOVEL	protein_coding	ENSCJAG00000022810	chromosome:C_jacchus3.2.1:X:1:142054208:1	140387951	140388482	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041391}  [Source:UniProtKB/TrEMBL;Acc:F7EAQ9]
ENSCJAG00000015532	KNOWN_BY_PROJECTION	protein_coding	ZSCAN10	chromosome:C_jacchus3.2.1:12:1:121768101:1	3127865	3138126	R	zinc finger and SCAN domain containing 10 [Source:HGNC Symbol;Acc:HGNC:12997]
ENSCJAG00000023322	NOVEL	protein_coding	ENSCJAG00000023322	chromosome:C_jacchus3.2.1:X:1:142054208:1	136828739	136829665	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041828}  [Source:UniProtKB/TrEMBL;Acc:F7DUS1]
ENSCJAG00000023347	NOVEL	protein_coding	ENSCJAG00000023347	chromosome:C_jacchus3.2.1:X:1:142054208:1	136749040	136750185	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044782}  [Source:UniProtKB/TrEMBL;Acc:F7FHQ9]
ENSCJAG00000021946	NOVEL	protein_coding	ENSCJAG00000021946	chromosome:C_jacchus3.2.1:X:1:142054208:1	129079253	129080632	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040630}  [Source:UniProtKB/TrEMBL;Acc:F7IBR8]
ENSCJAG00000012819	NOVEL	protein_coding	ENSCJAG00000012819	chromosome:C_jacchus3.2.1:9:1:124281992:1	23163840	23171095	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023509}  [Source:UniProtKB/TrEMBL;Acc:F7IB30]
ENSCJAG00000022387	KNOWN_BY_PROJECTION	protein_coding	SOX3	chromosome:C_jacchus3.2.1:X:1:142054208:1	128312013	128312666	R	SRY (sex determining region Y)-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
ENSCJAG00000031535	NOVEL	protein_coding	ENSCJAG00000031535	scaffold:C_jacchus3.2.1:GL285459.1:1:14828:1	11164	11616	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043321}  [Source:UniProtKB/TrEMBL;Acc:H9KY11]
ENSCJAG00000022388	KNOWN_BY_PROJECTION	protein_coding	TPM2	chromosome:C_jacchus3.2.1:X:1:142054208:1	126490830	126491564	D	tropomyosin 2 (beta) [Source:HGNC Symbol;Acc:HGNC:12011]
ENSCJAG00000015506	KNOWN_BY_PROJECTION	protein_coding	IL32	chromosome:C_jacchus3.2.1:12:1:121768101:1	3119927	3121849	D	interleukin 32 [Source:HGNC Symbol;Acc:HGNC:16830]
ENSCJAG00000022249	KNOWN	protein_coding	GPR101	chromosome:C_jacchus3.2.1:X:1:142054208:1	124708168	124709697	R	Putative G-protein coupled receptor 101 {ECO:0000313|EMBL:JAB18447.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040901}  [Source:UniProtKB/TrEMBL;Acc:F7I257]
ENSCJAG00000009291	NOVEL	protein_coding	ENSCJAG00000009291	scaffold:C_jacchus3.2.1:ACFV01183941.1:1:13681:1	1908	13366	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017016}  [Source:UniProtKB/TrEMBL;Acc:H9KWK5]
ENSCJAG00000010088	KNOWN_BY_PROJECTION	protein_coding	C1orf112	chromosome:C_jacchus3.2.1:18:1:47448759:1	36619103	36682991	R	chromosome 1 open reading frame 112 [Source:HGNC Symbol;Acc:HGNC:25565]
ENSCJAG00000002415	KNOWN_BY_PROJECTION	protein_coding	CCDC134	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	555123	556003	R	coiled-coil domain containing 134 [Source:HGNC Symbol;Acc:HGNC:26185]
ENSCJAG00000004957	NOVEL	protein_coding	ENSCJAG00000004957	scaffold:C_jacchus3.2.1:GL285008.1:1:46170:1	24996	36548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050256}  [Source:UniProtKB/TrEMBL;Acc:H9KYG5]
ENSCJAG00000023311	NOVEL	protein_coding	ENSCJAG00000023311	chromosome:C_jacchus3.2.1:X:1:142054208:1	123820428	123821291	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041817}  [Source:UniProtKB/TrEMBL;Acc:F7E970]
ENSCJAG00000022008	NOVEL	protein_coding	ENSCJAG00000022008	chromosome:C_jacchus3.2.1:X:1:142054208:1	121581726	121582127	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040678}  [Source:UniProtKB/TrEMBL;Acc:F7I6Z5]
ENSCJAG00000023123	KNOWN_BY_PROJECTION	protein_coding	OR13H1	chromosome:C_jacchus3.2.1:X:1:142054208:1	119426407	119427487	D	olfactory receptor, family 13, subfamily H, member 1 [Source:HGNC Symbol;Acc:HGNC:14755]
ENSCJAG00000005165	NOVEL	protein_coding	ENSCJAG00000005165	chromosome:C_jacchus3.2.1:X:1:142054208:1	107302802	107304103	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009417}  [Source:UniProtKB/TrEMBL;Acc:F7GLX1]
ENSCJAG00000022344	NOVEL	processed_pseudogene	ENSCJAG00000022344	chromosome:C_jacchus3.2.1:5:1:159171411:1	23678626	23679228	D	<no descrition>
ENSCJAG00000022054	NOVEL	processed_pseudogene	ENSCJAG00000022054	chromosome:C_jacchus3.2.1:5:1:159171411:1	20545982	20546392	R	<no descrition>
ENSCJAG00000033138	NOVEL	processed_pseudogene	ENSCJAG00000033138	chromosome:C_jacchus3.2.1:5:1:159171411:1	19656437	19656962	D	<no descrition>
ENSCJAG00000023303	NOVEL	processed_pseudogene	ENSCJAG00000023303	chromosome:C_jacchus3.2.1:5:1:159171411:1	10714107	10714484	D	<no descrition>
ENSCJAG00000022366	NOVEL	protein_coding	ENSCJAG00000022366	chromosome:C_jacchus3.2.1:14:1:108792865:1	52107750	52109786	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040995}  [Source:UniProtKB/TrEMBL;Acc:F7IT04]
ENSCJAG00000023302	NOVEL	processed_pseudogene	ENSCJAG00000023302	chromosome:C_jacchus3.2.1:5:1:159171411:1	10555195	10555674	R	<no descrition>
ENSCJAG00000023003	NOVEL	processed_pseudogene	ENSCJAG00000023003	chromosome:C_jacchus3.2.1:5:1:159171411:1	4556282	4556764	R	<no descrition>
ENSCJAG00000023195	NOVEL	processed_pseudogene	ENSCJAG00000023195	chromosome:C_jacchus3.2.1:1:1:210400635:1	205128973	205129245	D	<no descrition>
ENSCJAG00000022526	NOVEL	processed_pseudogene	ENSCJAG00000022526	chromosome:C_jacchus3.2.1:1:1:210400635:1	204766482	204767063	D	<no descrition>
ENSCJAG00000022522	NOVEL	protein_coding	ENSCJAG00000022522	chromosome:C_jacchus3.2.1:5:1:159171411:1	37732365	37732733	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041129}  [Source:UniProtKB/TrEMBL;Acc:F7DXD5]
ENSCJAG00000032065	NOVEL	protein_coding	ENSCJAG00000032065	chromosome:C_jacchus3.2.1:5:1:159171411:1	30994973	30995104	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049852}  [Source:UniProtKB/TrEMBL;Acc:F6YV71]
ENSCJAG00000005795	KNOWN_BY_PROJECTION	protein_coding	THBD	chromosome:C_jacchus3.2.1:5:1:159171411:1	28780622	28782337	R	thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784]
ENSCJAG00000022308	KNOWN_BY_PROJECTION	protein_coding	SSTR4	chromosome:C_jacchus3.2.1:5:1:159171411:1	28768616	28769590	D	somatostatin receptor 4 [Source:HGNC Symbol;Acc:HGNC:11333]
ENSCJAG00000023291	NOVEL	protein_coding	ENSCJAG00000023291	chromosome:C_jacchus3.2.1:5:1:159171411:1	14563677	14564078	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041803}  [Source:UniProtKB/TrEMBL;Acc:F7ELP5]
ENSCJAG00000015451	KNOWN	protein_coding	THOC6	chromosome:C_jacchus3.2.1:12:1:121768101:1	3054168	3057703	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044804}  [Source:UniProtKB/TrEMBL;Acc:F7ECE3]
ENSCJAG00000023288	KNOWN_BY_PROJECTION	protein_coding	FOXS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	5457465	5458796	D	forkhead box S1 [Source:HGNC Symbol;Acc:HGNC:3735]
ENSCJAG00000031320	NOVEL	protein_coding	ENSCJAG00000031320	chromosome:C_jacchus3.2.1:5:1:159171411:1	5103920	5104168	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050172}  [Source:UniProtKB/TrEMBL;Acc:F7H467]
ENSCJAG00000023397	NOVEL	protein_coding	ENSCJAG00000023397	chromosome:C_jacchus3.2.1:5:1:159171411:1	642502	643029	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041893}  [Source:UniProtKB/TrEMBL;Acc:F7HF13]
ENSCJAG00000023396	NOVEL	protein_coding	ENSCJAG00000023396	chromosome:C_jacchus3.2.1:5:1:159171411:1	39597	40050	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041892}  [Source:UniProtKB/TrEMBL;Acc:F7HF15]
ENSCJAG00000022219	NOVEL	protein_coding	ENSCJAG00000022219	scaffold:C_jacchus3.2.1:GL290139.1:1:424144:1	149579	150130	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:H9KXR7]
ENSCJAG00000023171	NOVEL	protein_coding	ENSCJAG00000023171	chromosome:C_jacchus3.2.1:1:1:210400635:1	206099210	206099590	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041693}  [Source:UniProtKB/TrEMBL;Acc:F7H523]
ENSCJAG00000022758	NOVEL	protein_coding	ENSCJAG00000022758	chromosome:C_jacchus3.2.1:1:1:210400635:1	201178820	201179363	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041341}  [Source:UniProtKB/TrEMBL;Acc:F7F2P0]
ENSCJAG00000023025	KNOWN	protein_coding	TOR4A	chromosome:C_jacchus3.2.1:1:1:210400635:1	181413722	181414993	D	Torsin-4A {ECO:0000313|EMBL:JAB04277.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041571}  [Source:UniProtKB/TrEMBL;Acc:F7FEP2]
ENSCJAG00000018610	KNOWN_BY_PROJECTION	protein_coding	PZP	chromosome:C_jacchus3.2.1:9:1:124281992:1	21424494	21496948	R	pregnancy-zone protein [Source:HGNC Symbol;Acc:HGNC:9750]
ENSCJAG00000023024	KNOWN_BY_PROJECTION	protein_coding	RNF224	chromosome:C_jacchus3.2.1:1:1:210400635:1	181363977	181364387	D	ring finger protein 224 [Source:HGNC Symbol;Acc:HGNC:41912]
ENSCJAG00000022377	NOVEL	protein_coding	ENSCJAG00000022377	chromosome:C_jacchus3.2.1:1:1:210400635:1	179593720	179594103	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041006}  [Source:UniProtKB/TrEMBL;Acc:F7FV17]
ENSCJAG00000037600	NOVEL	protein_coding	ENSCJAG00000037600	chromosome:C_jacchus3.2.1:1:1:210400635:1	175641904	175642062	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052258}  [Source:UniProtKB/TrEMBL;Acc:F7IJ46]
ENSCJAG00000023270	KNOWN_BY_PROJECTION	protein_coding	QRFP	chromosome:C_jacchus3.2.1:1:1:210400635:1	175017417	175017827	R	pyroglutamylated RFamide peptide [Source:HGNC Symbol;Acc:HGNC:29982]
ENSCJAG00000031579	NOVEL	protein_coding	ENSCJAG00000031579	chromosome:C_jacchus3.2.1:1:1:210400635:1	173493921	173494097	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043436}  [Source:UniProtKB/TrEMBL;Acc:F7IAC5]
ENSCJAG00000021856	KNOWN	protein_coding	ZBTB34	chromosome:C_jacchus3.2.1:1:1:210400635:1	170746748	170748262	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040548}  [Source:UniProtKB/TrEMBL;Acc:F7ITA7]
ENSCJAG00000017426	NOVEL	protein_coding	ENSCJAG00000017426	scaffold:C_jacchus3.2.1:GL285017.1:1:84067:1	80140	83507	D	<no descrition>
ENSCJAG00000009954	KNOWN	protein_coding	KIFAP3	chromosome:C_jacchus3.2.1:18:1:47448759:1	36396964	36542364	D	Kinesin-associated protein 3 isoform 1 {ECO:0000313|EMBL:JAB05976.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018445}  [Source:UniProtKB/TrEMBL;Acc:F7GVR3]
ENSCJAG00000034418	NOVEL	protein_coding	ENSCJAG00000034418	chromosome:C_jacchus3.2.1:1:1:210400635:1	167455930	167456340	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F6ZWZ5]
ENSCJAG00000023337	NOVEL	protein_coding	ENSCJAG00000023337	chromosome:C_jacchus3.2.1:1:1:210400635:1	166575711	166576451	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041843}  [Source:UniProtKB/TrEMBL;Acc:F7DDD0]
ENSCJAG00000021771	NOVEL	protein_coding	ENSCJAG00000021771	chromosome:C_jacchus3.2.1:1:1:210400635:1	166551181	166552116	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040476}  [Source:UniProtKB/TrEMBL;Acc:F7I4R6]
ENSCJAG00000023154	NOVEL	processed_pseudogene	ENSCJAG00000023154	chromosome:C_jacchus3.2.1:11:1:130397257:1	66252282	66252770	R	<no descrition>
ENSCJAG00000002028	NOVEL	processed_pseudogene	ENSCJAG00000002028	chromosome:C_jacchus3.2.1:11:1:130397257:1	64623899	64624228	R	<no descrition>
ENSCJAG00000022574	NOVEL	processed_pseudogene	ENSCJAG00000022574	chromosome:C_jacchus3.2.1:9:1:124281992:1	43165275	43165655	D	<no descrition>
ENSCJAG00000033761	NOVEL	processed_pseudogene	ENSCJAG00000033761	chromosome:C_jacchus3.2.1:9:1:124281992:1	42165181	42165645	R	<no descrition>
ENSCJAG00000022244	KNOWN_BY_PROJECTION	protein_coding	OR2AG2	chromosome:C_jacchus3.2.1:11:1:130397257:1	70115639	70116709	R	olfactory receptor, family 2, subfamily AG, member 2 [Source:HGNC Symbol;Acc:HGNC:15143]
ENSCJAG00000022452	NOVEL	processed_pseudogene	ENSCJAG00000022452	chromosome:C_jacchus3.2.1:6:1:158406734:1	146212705	146213190	D	<no descrition>
ENSCJAG00000014291	KNOWN	protein_coding	PRKCDBP	chromosome:C_jacchus3.2.1:11:1:130397257:1	69668627	69668863	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026265}  [Source:UniProtKB/TrEMBL;Acc:F7IQY6]
ENSCJAG00000022245	KNOWN_BY_PROJECTION	protein_coding	OR52W1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69534434	69535544	D	olfactory receptor, family 52, subfamily W, member 1 [Source:HGNC Symbol;Acc:HGNC:15239]
ENSCJAG00000009943	KNOWN_BY_PROJECTION	protein_coding	METTL11B	chromosome:C_jacchus3.2.1:18:1:47448759:1	36321802	36340865	R	methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
ENSCJAG00000015398	KNOWN_BY_PROJECTION	protein_coding	KREMEN2	chromosome:C_jacchus3.2.1:12:1:121768101:1	2979657	2983795	D	kringle containing transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:18797]
ENSCJAG00000022246	KNOWN_BY_PROJECTION	protein_coding	OR52L1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69387987	69389061	R	olfactory receptor, family 52, subfamily L, member 1 [Source:HGNC Symbol;Acc:HGNC:14785]
ENSCJAG00000022581	KNOWN_BY_PROJECTION	protein_coding	OR6C74	chromosome:C_jacchus3.2.1:9:1:124281992:1	44165214	44166315	D	olfactory receptor, family 6, subfamily C, member 74 [Source:HGNC Symbol;Acc:HGNC:31303]
ENSCJAG00000022576	KNOWN_BY_PROJECTION	protein_coding	OR9K2	chromosome:C_jacchus3.2.1:9:1:124281992:1	44067797	44068912	R	olfactory receptor, family 9, subfamily K, member 2 [Source:HGNC Symbol;Acc:HGNC:15339]
ENSCJAG00000022575	NOVEL	protein_coding	ENSCJAG00000022575	chromosome:C_jacchus3.2.1:9:1:124281992:1	44053483	44054424	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7DWU9]
ENSCJAG00000022744	KNOWN_BY_PROJECTION	protein_coding	OR56A1	chromosome:C_jacchus3.2.1:11:1:130397257:1	69357799	69358865	R	olfactory receptor, family 56, subfamily A, member 1 [Source:HGNC Symbol;Acc:HGNC:14781]
ENSCJAG00000022573	KNOWN_BY_PROJECTION	protein_coding	TOMM6	chromosome:C_jacchus3.2.1:9:1:124281992:1	42237334	42237906	R	translocase of outer mitochondrial membrane 6 homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:34528]
ENSCJAG00000015380	NOVEL	protein_coding	ENSCJAG00000015380	chromosome:C_jacchus3.2.1:12:1:121768101:1	2920673	2922250	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028319}  [Source:UniProtKB/TrEMBL;Acc:F7BQI4]
ENSCJAG00000009937	KNOWN_BY_PROJECTION	protein_coding	GORAB	chromosome:C_jacchus3.2.1:18:1:47448759:1	35963603	35985952	R	golgin, RAB6-interacting [Source:HGNC Symbol;Acc:HGNC:25676]
ENSCJAG00000034747	NOVEL	pseudogene	ENSCJAG00000034747	chromosome:C_jacchus3.2.1:12:1:121768101:1	2893229	2893463	R	<no descrition>
ENSCJAG00000033980	NOVEL	pseudogene	ENSCJAG00000033980	chromosome:C_jacchus3.2.1:12:1:121768101:1	2850685	2851103	D	<no descrition>
ENSCJAG00000009928	KNOWN	protein_coding	PRRX1	chromosome:C_jacchus3.2.1:18:1:47448759:1	35809565	35884257	R	Paired mesoderm homeobox protein 1 isoform pmx-1b {ECO:0000313|EMBL:JAB16425.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018235}  [Source:UniProtKB/TrEMBL;Acc:F7GR75]
ENSCJAG00000021778	NOVEL	protein_coding	ENSCJAG00000021778	chromosome:C_jacchus3.2.1:11:1:130397257:1	69164949	69165908	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I2F9]
ENSCJAG00000023294	NOVEL	protein_coding	ENSCJAG00000023294	chromosome:C_jacchus3.2.1:9:1:124281992:1	39405410	39405964	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041806}  [Source:UniProtKB/TrEMBL;Acc:F7ELL5]
ENSCJAG00000031970	NOVEL	protein_coding	ENSCJAG00000031970	chromosome:C_jacchus3.2.1:9:1:124281992:1	38384829	38385206	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041122}  [Source:UniProtKB/TrEMBL;Acc:F7DXF7]
ENSCJAG00000023293	NOVEL	protein_coding	ENSCJAG00000023293	chromosome:C_jacchus3.2.1:9:1:124281992:1	37468073	37468867	R	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7ELM5]
ENSCJAG00000021780	NOVEL	protein_coding	OR52D1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68931419	68932484	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXC7]
ENSCJAG00000023292	NOVEL	protein_coding	ENSCJAG00000023292	chromosome:C_jacchus3.2.1:9:1:124281992:1	37153978	37154724	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041804}  [Source:UniProtKB/TrEMBL;Acc:F7ELN5]
ENSCJAG00000032036	NOVEL	protein_coding	ENSCJAG00000032036	chromosome:C_jacchus3.2.1:9:1:124281992:1	36040648	36041115	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045486}  [Source:UniProtKB/TrEMBL;Acc:F6Q3J9]
ENSCJAG00000032774	NOVEL	protein_coding	OR51I1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68856991	68858004	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXC5]
ENSCJAG00000032096	NOVEL	protein_coding	ENSCJAG00000032096	chromosome:C_jacchus3.2.1:11:1:130397257:1	68812121	68813059	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7D2B7]
ENSCJAG00000023032	NOVEL	protein_coding	ENSCJAG00000023032	chromosome:C_jacchus3.2.1:9:1:124281992:1	35615675	35616067	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041578}  [Source:UniProtKB/TrEMBL;Acc:F7FEI7]
ENSCJAG00000015347	KNOWN_BY_PROJECTION	protein_coding	TCEB2	chromosome:C_jacchus3.2.1:12:1:121768101:1	2815647	2820384	D	transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) [Source:HGNC Symbol;Acc:HGNC:11619]
ENSCJAG00000020185	NOVEL	protein_coding	OR51M1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68783746	68784801	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXC2]
ENSCJAG00000021783	NOVEL	protein_coding	OR51B5	chromosome:C_jacchus3.2.1:11:1:130397257:1	68749017	68750082	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXC0]
ENSCJAG00000021744	NOVEL	protein_coding	CAJA-T2R10	chromosome:C_jacchus3.2.1:9:1:124281992:1	10542123	10543046	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I764]
ENSCJAG00000009876	KNOWN_BY_PROJECTION	protein_coding	FMO3	chromosome:C_jacchus3.2.1:18:1:47448759:1	35473300	35495758	R	flavin containing monooxygenase 3 [Source:HGNC Symbol;Acc:HGNC:3771]
ENSCJAG00000018648	KNOWN	protein_coding	A2M	chromosome:C_jacchus3.2.1:9:1:124281992:1	21300759	21352771	R	Alpha-2-macroglobulin {ECO:0000313|EMBL:JAB20071.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034712}  [Source:UniProtKB/TrEMBL;Acc:F7ID19]
ENSCJAG00000015685	NOVEL	protein_coding	OR52E2	chromosome:C_jacchus3.2.1:11:1:130397257:1	68385090	68386043	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXA5]
ENSCJAG00000009848	KNOWN_BY_PROJECTION	protein_coding	FMO2	chromosome:C_jacchus3.2.1:18:1:47448759:1	35369398	35394198	R	flavin containing monooxygenase 2 (non-functional) [Source:HGNC Symbol;Acc:HGNC:3770]
ENSCJAG00000013555	NOVEL	protein_coding	ENSCJAG00000013555	scaffold:C_jacchus3.2.1:GL285947.1:1:23386:1	17334	18098	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024918}  [Source:UniProtKB/TrEMBL;Acc:H9KX02]
ENSCJAG00000014009	KNOWN	protein_coding	UBA5	scaffold:C_jacchus3.2.1:GL285768.1:1:126350:1	50275	60837	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025781}  [Source:UniProtKB/TrEMBL;Acc:H9KX24]
ENSCJAG00000023444	KNOWN_BY_PROJECTION	protein_coding	CAPZA3	chromosome:C_jacchus3.2.1:9:1:124281992:1	2854321	2855400	R	capping protein (actin filament) muscle Z-line, alpha 3 [Source:HGNC Symbol;Acc:HGNC:24205]
ENSCJAG00000020193	NOVEL	protein_coding	ENSCJAG00000020193	scaffold:C_jacchus3.2.1:GL285856.1:1:24147:1	22066	23814	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037554}  [Source:UniProtKB/TrEMBL;Acc:H9KXK5]
ENSCJAG00000032598	NOVEL	protein_coding	ENSCJAG00000032598	chromosome:C_jacchus3.2.1:11:1:130397257:1	68001855	68002817	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7FQY9]
ENSCJAG00000022936	KNOWN_BY_PROJECTION	protein_coding	GPR35	chromosome:C_jacchus3.2.1:6:1:158406734:1	157160690	157161706	D	G protein-coupled receptor 35 [Source:HGNC Symbol;Acc:HGNC:4492]
ENSCJAG00000023005	NOVEL	protein_coding	ENSCJAG00000023005	chromosome:C_jacchus3.2.1:6:1:158406734:1	156047742	156047975	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041551}  [Source:UniProtKB/TrEMBL;Acc:F7FTJ6]
ENSCJAG00000015323	KNOWN	protein_coding	PRSS41	chromosome:C_jacchus3.2.1:12:1:121768101:1	2791030	2799316	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028235}  [Source:UniProtKB/TrEMBL;Acc:F6WUE1]
ENSCJAG00000002338	KNOWN	protein_coding	NAGA	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	265510	269446	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004216}  [Source:UniProtKB/TrEMBL;Acc:H9KVS7]
ENSCJAG00000023055	NOVEL	protein_coding	OR51D1	chromosome:C_jacchus3.2.1:11:1:130397257:1	67968076	67969177	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VX86]
ENSCJAG00000032482	NOVEL	protein_coding	ENSCJAG00000032482	chromosome:C_jacchus3.2.1:6:1:158406734:1	151879008	151879169	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043438}  [Source:UniProtKB/TrEMBL;Acc:F7IAC2]
ENSCJAG00000007592	NOVEL	protein_coding	ENSCJAG00000007592	scaffold:C_jacchus3.2.1:GL290398.1:1:6319:1	826	2179	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014089}  [Source:UniProtKB/TrEMBL;Acc:H9KWE3]
ENSCJAG00000018694	NOVEL	pseudogene	ENSCJAG00000018694	chromosome:C_jacchus3.2.1:9:1:124281992:1	21227261	21227943	R	<no descrition>
ENSCJAG00000013785	KNOWN_BY_PROJECTION	protein_coding	TIGD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	148969171	148971792	R	tigger transposable element derived 1 [Source:HGNC Symbol;Acc:HGNC:14523]
ENSCJAG00000033663	NOVEL	pseudogene	ENSCJAG00000033663	scaffold:C_jacchus3.2.1:GL286223.1:1:132061:1	83650	84243	R	<no descrition>
ENSCJAG00000032642	NOVEL	protein_coding	ENSCJAG00000032642	scaffold:C_jacchus3.2.1:GL286223.1:1:132061:1	3980	6022	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050970}  [Source:UniProtKB/TrEMBL;Acc:H9KYI3]
ENSCJAG00000018701	KNOWN	protein_coding	M6PR	chromosome:C_jacchus3.2.1:9:1:124281992:1	21166562	21176224	R	Cation-dependent mannose-6-phosphate receptor isoform 1 {ECO:0000313|EMBL:JAB22882.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034758}  [Source:UniProtKB/TrEMBL;Acc:F7I5Z9]
ENSCJAG00000031951	NOVEL	protein_coding	ENSCJAG00000031951	chromosome:C_jacchus3.2.1:11:1:130397257:1	67519415	67520419	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HN60]
ENSCJAG00000023143	NOVEL	protein_coding	ENSCJAG00000023143	chromosome:C_jacchus3.2.1:11:1:130397257:1	66274330	66274656	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041671}  [Source:UniProtKB/TrEMBL;Acc:F7HA92]
ENSCJAG00000010177	NOVEL	protein_coding	ENSCJAG00000010177	scaffold:C_jacchus3.2.1:ACFV01176693.1:1:37134:1	19877	32117	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048274}  [Source:UniProtKB/TrEMBL;Acc:H9KYB4]
ENSCJAG00000022089	NOVEL	protein_coding	ENSCJAG00000022089	chromosome:C_jacchus3.2.1:11:1:130397257:1	63639138	63639419	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040753}  [Source:UniProtKB/TrEMBL;Acc:F7IT92]
ENSCJAG00000033011	KNOWN_BY_PROJECTION	protein_coding	KRTAP9-1	scaffold:C_jacchus3.2.1:ACFV01176693.1:1:37134:1	4528	17449	R	keratin associated protein 9-1 [Source:HGNC Symbol;Acc:HGNC:18912]
ENSCJAG00000015267	KNOWN_BY_PROJECTION	protein_coding	RPS2	chromosome:C_jacchus3.2.1:12:1:121768101:1	2634619	2638003	D	ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
ENSCJAG00000022746	NOVEL	processed_pseudogene	ENSCJAG00000022746	chromosome:C_jacchus3.2.1:1:1:210400635:1	136486066	136486209	R	<no descrition>
ENSCJAG00000033142	NOVEL	processed_pseudogene	ENSCJAG00000033142	chromosome:C_jacchus3.2.1:1:1:210400635:1	99230483	99230778	R	<no descrition>
ENSCJAG00000023403	NOVEL	processed_pseudogene	ENSCJAG00000023403	chromosome:C_jacchus3.2.1:1:1:210400635:1	97051243	97051719	D	<no descrition>
ENSCJAG00000009773	KNOWN_BY_PROJECTION	protein_coding	FMO4	chromosome:C_jacchus3.2.1:18:1:47448759:1	35257478	35283529	R	flavin containing monooxygenase 4 [Source:HGNC Symbol;Acc:HGNC:3772]
ENSCJAG00000002388	KNOWN_BY_PROJECTION	protein_coding	ANHX	scaffold:C_jacchus3.2.1:GL286330.1:1:33608:1	17659	19326	R	anomalous homeobox [Source:HGNC Symbol;Acc:HGNC:40024]
ENSCJAG00000022899	NOVEL	processed_pseudogene	ENSCJAG00000022899	chromosome:C_jacchus3.2.1:1:1:210400635:1	85974167	85974295	R	<no descrition>
ENSCJAG00000020065	KNOWN_BY_PROJECTION	protein_coding	OR1L3	chromosome:C_jacchus3.2.1:1:1:210400635:1	166517139	166518242	D	olfactory receptor, family 1, subfamily L, member 3 [Source:HGNC Symbol;Acc:HGNC:8215]
ENSCJAG00000021773	KNOWN_BY_PROJECTION	protein_coding	OR1N1	chromosome:C_jacchus3.2.1:1:1:210400635:1	166301842	166302798	R	olfactory receptor, family 1, subfamily N, member 1 [Source:HGNC Symbol;Acc:HGNC:8221]
ENSCJAG00000033153	NOVEL	protein_coding	ENSCJAG00000033153	scaffold:C_jacchus3.2.1:GL289948.1:1:7805:1	7003	7468	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027152}  [Source:UniProtKB/TrEMBL;Acc:H9KX34]
ENSCJAG00000019973	NOVEL	pseudogene	ENSCJAG00000019973	scaffold:C_jacchus3.2.1:GL285726.1:1:60758:1	16488	17457	D	<no descrition>
ENSCJAG00000007800	KNOWN_BY_PROJECTION	protein_coding	OR1J4	chromosome:C_jacchus3.2.1:1:1:210400635:1	166283034	166283975	D	olfactory receptor, family 1, subfamily J, member 4 [Source:HGNC Symbol;Acc:HGNC:8211]
ENSCJAG00000020077	KNOWN_BY_PROJECTION	protein_coding	OR1J2	chromosome:C_jacchus3.2.1:1:1:210400635:1	166277832	166278773	D	olfactory receptor, family 1, subfamily J, member 2 [Source:HGNC Symbol;Acc:HGNC:8209]
ENSCJAG00000022540	KNOWN	protein_coding	HDHD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	156816222	156817327	R	Haloacid dehalogenase-like hydrolase domain-containing protein 3 {ECO:0000313|EMBL:JAB01880.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041147}  [Source:UniProtKB/TrEMBL;Acc:F7DX60]
ENSCJAG00000008089	NOVEL	protein_coding	ENSCJAG00000008089	scaffold:C_jacchus3.2.1:GL286574.1:1:16901:1	14984	15429	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014933}  [Source:UniProtKB/TrEMBL;Acc:H9KWH4]
ENSCJAG00000018715	KNOWN_BY_PROJECTION	protein_coding	PHC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	21138179	21167641	D	polyhomeotic homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:3182]
ENSCJAG00000022534	KNOWN	protein_coding	TAL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	149004966	149005595	D	T-cell acute lymphocytic leukemia protein 2 {ECO:0000313|EMBL:JAB13428.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041141}  [Source:UniProtKB/TrEMBL;Acc:F7DX91]
ENSCJAG00000022354	NOVEL	pseudogene	ENSCJAG00000022354	scaffold:C_jacchus3.2.1:ACFV01186199.1:1:8869:1	2664	4608	D	<no descrition>
ENSCJAG00000022719	KNOWN_BY_PROJECTION	protein_coding	OR13C7	chromosome:C_jacchus3.2.1:1:1:210400635:1	137812112	137813065	R	olfactory receptor, family 13, subfamily C, member 7 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:15102]
ENSCJAG00000022718	NOVEL	protein_coding	ENSCJAG00000022718	chromosome:C_jacchus3.2.1:1:1:210400635:1	137797282	137798256	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7G6R5]
ENSCJAG00000010141	NOVEL	protein_coding	ENSCJAG00000010141	chromosome:C_jacchus3.2.1:1:1:210400635:1	137774365	137775324	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7GVM4]
ENSCJAG00000022469	NOVEL	processed_pseudogene	ENSCJAG00000022469	chromosome:C_jacchus3.2.1:13:1:117903854:1	36431095	36431592	D	<no descrition>
ENSCJAG00000022101	NOVEL	processed_pseudogene	ENSCJAG00000022101	chromosome:C_jacchus3.2.1:13:1:117903854:1	20052275	20052466	R	<no descrition>
ENSCJAG00000022716	KNOWN_BY_PROJECTION	protein_coding	OR13J1	chromosome:C_jacchus3.2.1:1:1:210400635:1	137645336	137646418	R	olfactory receptor, family 13, subfamily J, member 1 [Source:HGNC Symbol;Acc:HGNC:15108]
ENSCJAG00000002696	KNOWN_BY_PROJECTION	protein_coding	ENTHD1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1124005	1146678	R	ENTH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26352]
ENSCJAG00000009058	NOVEL	protein_coding	ENSCJAG00000009058	scaffold:C_jacchus3.2.1:GL285938.1:1:13611:1	1	1813	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016591}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ6]
ENSCJAG00000035383	NOVEL	processed_pseudogene	ENSCJAG00000035383	scaffold:C_jacchus3.2.1:GL284710.1:1:67226:1	50081	50560	R	<no descrition>
ENSCJAG00000023128	KNOWN_BY_PROJECTION	protein_coding	TUSC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	127490503	127492910	R	tumor suppressor candidate 1 [Source:HGNC Symbol;Acc:HGNC:31010]
ENSCJAG00000003239	NOVEL	protein_coding	ENSCJAG00000003239	scaffold:C_jacchus3.2.1:GL288924.1:1:8857:1	3673	8465	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005903}  [Source:UniProtKB/TrEMBL;Acc:H9KW02]
ENSCJAG00000023209	NOVEL	processed_pseudogene	ENSCJAG00000023209	chromosome:C_jacchus3.2.1:16:1:96796970:1	72983828	72984150	R	<no descrition>
ENSCJAG00000033771	NOVEL	processed_pseudogene	ENSCJAG00000033771	chromosome:C_jacchus3.2.1:16:1:96796970:1	46380410	46380721	R	<no descrition>
ENSCJAG00000022751	NOVEL	protein_coding	ENSCJAG00000022751	chromosome:C_jacchus3.2.1:1:1:210400635:1	124148173	124149018	R	Protein-L-isoaspartate O-methyltransferase {ECO:0000256|RuleBase:RU003802}  [Source:UniProtKB/TrEMBL;Acc:F7FQT2]
ENSCJAG00000011367	KNOWN_BY_PROJECTION	protein_coding	CDX4	scaffold:C_jacchus3.2.1:GL286110.1:1:43855:1	14959	22457	D	caudal type homeobox 4 [Source:HGNC Symbol;Acc:HGNC:1808]
ENSCJAG00000023197	NOVEL	processed_pseudogene	ENSCJAG00000023197	chromosome:C_jacchus3.2.1:16:1:96796970:1	38555547	38556416	R	<no descrition>
ENSCJAG00000022637	KNOWN_BY_PROJECTION	protein_coding	IFNW1	chromosome:C_jacchus3.2.1:1:1:210400635:1	123219969	123221486	R	interferon, omega 1 [Source:HGNC Symbol;Acc:HGNC:5448]
ENSCJAG00000022310	NOVEL	protein_coding	ENSCJAG00000022310	chromosome:C_jacchus3.2.1:13:1:117903854:1	85772550	85772861	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040950}  [Source:UniProtKB/TrEMBL;Acc:F7HV00]
ENSCJAG00000008865	KNOWN	protein_coding	IFNB1	chromosome:C_jacchus3.2.1:1:1:210400635:1	123132807	123133364	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042746}  [Source:UniProtKB/TrEMBL;Acc:F6VNW8]
ENSCJAG00000006626	NOVEL	protein_coding	ENSCJAG00000006626	scaffold:C_jacchus3.2.1:GL285173.1:1:14038:1	1238	6003	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012236}  [Source:UniProtKB/TrEMBL;Acc:H9KWC4]
ENSCJAG00000004872	NOVEL	protein_coding	ENSCJAG00000004872	scaffold:C_jacchus3.2.1:GL285667.1:1:23745:1	8016	9776	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008885}  [Source:UniProtKB/TrEMBL;Acc:H9KW48]
ENSCJAG00000022413	KNOWN	protein_coding	RRAGA	chromosome:C_jacchus3.2.1:1:1:210400635:1	121008809	121010464	D	Ras-related GTP-binding protein A {ECO:0000313|EMBL:JAB10118.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041035}  [Source:UniProtKB/TrEMBL;Acc:F7FGT1]
ENSCJAG00000035010	NOVEL	protein_coding	ENSCJAG00000035010	scaffold:C_jacchus3.2.1:GL285667.1:1:23745:1	14869	18862	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046477}  [Source:UniProtKB/TrEMBL;Acc:H9KY68]
ENSCJAG00000023194	NOVEL	protein_coding	ENSCJAG00000023194	scaffold:C_jacchus3.2.1:GL286310.1:1:28081:1	13517	19336	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041716}  [Source:UniProtKB/TrEMBL;Acc:H9KXW2]
ENSCJAG00000034137	NOVEL	protein_coding	ENSCJAG00000034137	chromosome:C_jacchus3.2.1:13:1:117903854:1	77995128	77995535	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046666}  [Source:UniProtKB/TrEMBL;Acc:F7IMF9]
ENSCJAG00000003923	NOVEL	pseudogene	ENSCJAG00000003923	scaffold:C_jacchus3.2.1:GL284765.1:1:11029:1	5156	5857	R	<no descrition>
ENSCJAG00000022410	KNOWN	protein_coding	PPAPDC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	106398800	106401746	D	Presqualene diphosphate phosphatase {ECO:0000313|EMBL:JAB11360.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041032}  [Source:UniProtKB/TrEMBL;Acc:F7FGU6]
ENSCJAG00000015245	KNOWN_BY_PROJECTION	protein_coding	TBL3	chromosome:C_jacchus3.2.1:12:1:121768101:1	2622366	2628594	R	transducin (beta)-like 3 [Source:HGNC Symbol;Acc:HGNC:11587]
ENSCJAG00000005414	NOVEL	protein_coding	ENSCJAG00000005414	scaffold:C_jacchus3.2.1:ACFV01200363.1:1:2375:1	702	2271	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009890}  [Source:UniProtKB/TrEMBL;Acc:H9KW72]
ENSCJAG00000014178	NOVEL	protein_coding	ENSCJAG00000014178	scaffold:C_jacchus3.2.1:ACFV01186630.1:1:9423:1	3859	4296	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026071}  [Source:UniProtKB/TrEMBL;Acc:H9KX27]
ENSCJAG00000002331	KNOWN_BY_PROJECTION	protein_coding	NDUFA6	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	237232	238875	D	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa [Source:HGNC Symbol;Acc:HGNC:7690]
ENSCJAG00000005293	NOVEL	protein_coding	ENSCJAG00000005293	scaffold:C_jacchus3.2.1:GL286215.1:1:103782:1	4514	6263	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009686}  [Source:UniProtKB/TrEMBL;Acc:H9KW64]
ENSCJAG00000005301	NOVEL	protein_coding	ENSCJAG00000005301	scaffold:C_jacchus3.2.1:GL286215.1:1:103782:1	25814	32136	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052134}  [Source:UniProtKB/TrEMBL;Acc:H9KYL6]
ENSCJAG00000009700	KNOWN_BY_PROJECTION	protein_coding	PRRC2C	chromosome:C_jacchus3.2.1:18:1:47448759:1	35070818	35184896	R	proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
ENSCJAG00000015216	KNOWN_BY_PROJECTION	protein_coding	SYNGR3	chromosome:C_jacchus3.2.1:12:1:121768101:1	2604227	2607639	R	synaptogyrin 3 [Source:HGNC Symbol;Acc:HGNC:11501]
ENSCJAG00000033080	NOVEL	pseudogene	ENSCJAG00000033080	scaffold:C_jacchus3.2.1:GL285849.1:1:83312:1	75429	75839	D	<no descrition>
ENSCJAG00000032127	NOVEL	pseudogene	ENSCJAG00000032127	scaffold:C_jacchus3.2.1:ACFV01180619.1:1:9094:1	7137	8020	R	<no descrition>
ENSCJAG00000015194	KNOWN_BY_PROJECTION	protein_coding	ZNF598	chromosome:C_jacchus3.2.1:12:1:121768101:1	2591150	2601859	D	zinc finger protein 598 [Source:HGNC Symbol;Acc:HGNC:28079]
ENSCJAG00000015182	KNOWN	protein_coding	SLC9A3R2	chromosome:C_jacchus3.2.1:12:1:121768101:1	2562128	2573289	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045439}  [Source:UniProtKB/TrEMBL;Acc:F6QRH7]
ENSCJAG00000023267	NOVEL	protein_coding	ENSCJAG00000023267	chromosome:C_jacchus3.2.1:13:1:117903854:1	73637652	73638240	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041779}  [Source:UniProtKB/TrEMBL;Acc:F7FSV4]
ENSCJAG00000034304	NOVEL	protein_coding	ENSCJAG00000034304	chromosome:C_jacchus3.2.1:1:1:210400635:1	99309590	99310432	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045269}  [Source:UniProtKB/TrEMBL;Acc:F6QG53]
ENSCJAG00000000054	NOVEL	protein_coding	ENSCJAG00000000054	scaffold:C_jacchus3.2.1:ACFV01182995.1:1:8855:1	2252	6414	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000094}  [Source:UniProtKB/TrEMBL;Acc:H9KVJ1]
ENSCJAG00000015073	KNOWN_BY_PROJECTION	protein_coding	PKD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2484089	2514986	D	polycystic kidney disease 1 (autosomal dominant) [Source:HGNC Symbol;Acc:HGNC:9008]
ENSCJAG00000031629	NOVEL	protein_coding	ENSCJAG00000031629	chromosome:C_jacchus3.2.1:13:1:117903854:1	42964309	42965052	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043846}  [Source:UniProtKB/TrEMBL;Acc:F7IA01]
ENSCJAG00000008808	KNOWN	protein_coding	GCNT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	92326236	92328636	R	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase {ECO:0000313|EMBL:JAB06474.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016178}  [Source:UniProtKB/TrEMBL;Acc:F7A7G8]
ENSCJAG00000017179	KNOWN	protein_coding	TEKT1	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	107284	121432	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031584}  [Source:UniProtKB/TrEMBL;Acc:H9KX87]
ENSCJAG00000007719	NOVEL	protein_coding	ENSCJAG00000007719	scaffold:C_jacchus3.2.1:GL286457.1:1:128012:1	10817	14295	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014291}  [Source:UniProtKB/TrEMBL;Acc:H9KWF8]
ENSCJAG00000035078	NOVEL	pseudogene	ENSCJAG00000035078	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	1217367	1217650	D	<no descrition>
ENSCJAG00000037203	KNOWN_BY_PROJECTION	protein_coding	POMK	chromosome:C_jacchus3.2.1:13:1:117903854:1	41286328	41287107	D	protein-O-mannose kinase [Source:HGNC Symbol;Acc:HGNC:26267]
ENSCJAG00000022714	NOVEL	protein_coding	ENSCJAG00000022714	chromosome:C_jacchus3.2.1:13:1:117903854:1	40054346	40055830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041307}  [Source:UniProtKB/TrEMBL;Acc:F7G737]
ENSCJAG00000023305	NOVEL	protein_coding	ENSCJAG00000023305	chromosome:C_jacchus3.2.1:13:1:117903854:1	41277632	41278633	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041811}  [Source:UniProtKB/TrEMBL;Acc:F7E9A9]
ENSCJAG00000015059	KNOWN	protein_coding	RAB26	chromosome:C_jacchus3.2.1:12:1:121768101:1	2446330	2452672	R	Ras-related protein Rab-26 {ECO:0000313|EMBL:JAB17378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027318}  [Source:UniProtKB/TrEMBL;Acc:F7E9F2]
ENSCJAG00000023414	KNOWN	protein_coding	C8ORF4	chromosome:C_jacchus3.2.1:13:1:117903854:1	37921671	37923504	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041907}; Uncharacterized protein C8orf4 {ECO:0000313|EMBL:JAB05469.1}  [Source:UniProtKB/TrEMBL;Acc:F7H4G8]
ENSCJAG00000035071	NOVEL	protein_coding	ENSCJAG00000035071	scaffold:C_jacchus3.2.1:ACFV01179699.1:1:15964:1	7661	14623	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043979}  [Source:UniProtKB/TrEMBL;Acc:H9KY20]
ENSCJAG00000002782	NOVEL	protein_coding	ENSCJAG00000002782	chromosome:C_jacchus3.2.1:13:1:117903854:1	35597887	35598555	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005048}  [Source:UniProtKB/TrEMBL;Acc:F7I0Y0]
ENSCJAG00000037625	NOVEL	pseudogene	ENSCJAG00000037625	scaffold:C_jacchus3.2.1:ACFV01179083.1:1:20321:1	12227	14684	D	<no descrition>
ENSCJAG00000034521	NOVEL	protein_coding	ENSCJAG00000034521	scaffold:C_jacchus3.2.1:GL289523.1:1:7503:1	4516	7498	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049007}  [Source:UniProtKB/TrEMBL;Acc:H9KYC9]
ENSCJAG00000020541	NOVEL	pseudogene	ENSCJAG00000020541	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	491327	491931	R	<no descrition>
ENSCJAG00000009689	KNOWN_BY_PROJECTION	protein_coding	MYOC	chromosome:C_jacchus3.2.1:18:1:47448759:1	35017937	35036399	D	myocilin, trabecular meshwork inducible glucocorticoid response [Source:HGNC Symbol;Acc:HGNC:7610]
ENSCJAG00000018310	NOVEL	protein_coding	ENSCJAG00000018310	scaffold:C_jacchus3.2.1:GL286286.1:1:51265:1	4917	6869	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033897}  [Source:UniProtKB/TrEMBL;Acc:H9KXD4]
ENSCJAG00000012721	NOVEL	protein_coding	ENSCJAG00000012721	scaffold:C_jacchus3.2.1:GL290377.1:1:6984:1	4081	6124	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023300}  [Source:UniProtKB/TrEMBL;Acc:H9KWX7]
ENSCJAG00000022470	NOVEL	protein_coding	ENSCJAG00000022470	chromosome:C_jacchus3.2.1:13:1:117903854:1	34438985	34440510	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041083}  [Source:UniProtKB/TrEMBL;Acc:F7FGD3]
ENSCJAG00000035144	NOVEL	protein_coding	ENSCJAG00000035144	chromosome:C_jacchus3.2.1:13:1:117903854:1	29859621	29859938	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007264}  [Source:UniProtKB/TrEMBL;Acc:F6TS21]
ENSCJAG00000008105	NOVEL	protein_coding	ENSCJAG00000008105	scaffold:C_jacchus3.2.1:GL286277.1:1:51577:1	44940	51577	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014984}  [Source:UniProtKB/TrEMBL;Acc:H9KWH5]
ENSCJAG00000034518	NOVEL	protein_coding	ENSCJAG00000034518	chromosome:C_jacchus3.2.1:13:1:117903854:1	28818917	28820755	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041942}  [Source:UniProtKB/TrEMBL;Acc:F7GP34]
ENSCJAG00000022077	NOVEL	protein_coding	ENSCJAG00000022077	chromosome:C_jacchus3.2.1:13:1:117903854:1	20170977	20171603	R	40S ribosomal protein S8 {ECO:0000256|RuleBase:RU000669}  [Source:UniProtKB/TrEMBL;Acc:F7HQ86]
ENSCJAG00000002373	NOVEL	pseudogene	ENSCJAG00000002373	scaffold:C_jacchus3.2.1:ACFV01182235.1:1:12232:1	7788	8582	R	<no descrition>
ENSCJAG00000023091	NOVEL	protein_coding	ENSCJAG00000023091	chromosome:C_jacchus3.2.1:13:1:117903854:1	9686856	9687233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041624}  [Source:UniProtKB/TrEMBL;Acc:F7DEL8]
ENSCJAG00000022140	NOVEL	protein_coding	ENSCJAG00000022140	scaffold:C_jacchus3.2.1:GL286281.1:1:34666:1	21755	22075	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040799}  [Source:UniProtKB/TrEMBL;Acc:H9KXR4]
ENSCJAG00000022955	NOVEL	protein_coding	ENSCJAG00000022955	chromosome:C_jacchus3.2.1:16:1:96796970:1	93620354	93620752	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041510}  [Source:UniProtKB/TrEMBL;Acc:F7GHT9]
ENSCJAG00000009884	NOVEL	protein_coding	ENSCJAG00000009884	scaffold:C_jacchus3.2.1:GL285812.1:1:21139:1	14659	15251	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018123}  [Source:UniProtKB/TrEMBL;Acc:H9KWM3]
ENSCJAG00000022996	NOVEL	protein_coding	ENSCJAG00000022996	chromosome:C_jacchus3.2.1:16:1:96796970:1	92045445	92046353	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049913}  [Source:UniProtKB/TrEMBL;Acc:F6VBG3]
ENSCJAG00000031737	NOVEL	protein_coding	ENSCJAG00000031737	scaffold:C_jacchus3.2.1:GL286314.1:1:32282:1	25510	26572	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050798}  [Source:UniProtKB/TrEMBL;Acc:H9KYH8]
ENSCJAG00000031775	NOVEL	protein_coding	ENSCJAG00000031775	scaffold:C_jacchus3.2.1:GL285236.1:1:12772:1	9020	11023	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050897}  [Source:UniProtKB/TrEMBL;Acc:H9KYI0]
ENSCJAG00000023211	NOVEL	protein_coding	ENSCJAG00000023211	chromosome:C_jacchus3.2.1:16:1:96796970:1	83273588	83274585	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041725}  [Source:UniProtKB/TrEMBL;Acc:F7GPD0]
ENSCJAG00000002603	NOVEL	protein_coding	ENSCJAG00000002603	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1021456	1024967	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004830}  [Source:UniProtKB/TrEMBL;Acc:H9KVV1]
ENSCJAG00000009661	KNOWN	protein_coding	VAMP4	chromosome:C_jacchus3.2.1:18:1:47448759:1	34920594	34971627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049221}; Vesicle-associated membrane protein 4 isoform 1 {ECO:0000313|EMBL:JAB04035.1}  [Source:UniProtKB/TrEMBL;Acc:F6W2F6]
ENSCJAG00000002310	NOVEL	pseudogene	ENSCJAG00000002310	scaffold:C_jacchus3.2.1:GL286316.1:1:36525:1	1524	2016	R	<no descrition>
ENSCJAG00000038069	KNOWN	protein_coding	ZFP41	chromosome:C_jacchus3.2.1:16:1:96796970:1	51418080	51418676	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052172}; Zinc finger protein 41 homolog {ECO:0000313|EMBL:JAB10449.1}  [Source:UniProtKB/TrEMBL;Acc:F7HY04]
ENSCJAG00000023273	KNOWN	protein_coding	TSPYL5	chromosome:C_jacchus3.2.1:16:1:96796970:1	49023219	49026106	R	Testis-specific Y-encoded-like protein 5 {ECO:0000313|EMBL:JAB03726.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041785}  [Source:UniProtKB/TrEMBL;Acc:F7FEB3]
ENSCJAG00000023155	KNOWN_BY_PROJECTION	protein_coding	DCAF4L2	chromosome:C_jacchus3.2.1:16:1:96796970:1	39640468	39642281	R	DDB1 and CUL4 associated factor 4-like 2 [Source:HGNC Symbol;Acc:HGNC:26657]
ENSCJAG00000018756	KNOWN_BY_PROJECTION	protein_coding	A2ML1	chromosome:C_jacchus3.2.1:9:1:124281992:1	21028727	21089173	D	alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
ENSCJAG00000023054	NOVEL	processed_pseudogene	ENSCJAG00000023054	chromosome:C_jacchus3.2.1:7:1:155834243:1	46552141	46552620	R	<no descrition>
ENSCJAG00000022317	NOVEL	processed_pseudogene	ENSCJAG00000022317	chromosome:C_jacchus3.2.1:7:1:155834243:1	24532591	24533125	R	<no descrition>
ENSCJAG00000003107	NOVEL	protein_coding	ENSCJAG00000003107	scaffold:C_jacchus3.2.1:GL285067.1:1:59576:1	564	3753	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005685}  [Source:UniProtKB/TrEMBL;Acc:H9KVZ8]
ENSCJAG00000006919	NOVEL	pseudogene	ENSCJAG00000006919	scaffold:C_jacchus3.2.1:ACFV01193431.1:1:3153:1	2503	2857	R	<no descrition>
ENSCJAG00000001533	NOVEL	protein_coding	ENSCJAG00000001533	scaffold:C_jacchus3.2.1:ACFV01193303.1:1:5867:1	1477	2447	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002729}  [Source:UniProtKB/TrEMBL;Acc:H9KVP3]
ENSCJAG00000023261	NOVEL	protein_coding	ENSCJAG00000023261	chromosome:C_jacchus3.2.1:7:1:155834243:1	8527933	8528579	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041773}  [Source:UniProtKB/TrEMBL;Acc:F7FSZ1]
ENSCJAG00000023259	KNOWN	protein_coding	CALML5	chromosome:C_jacchus3.2.1:7:1:155834243:1	4035156	4036014	R	Calmodulin-like protein 5 {ECO:0000313|EMBL:JAB02083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041771}  [Source:UniProtKB/TrEMBL;Acc:F7FSZ4]
ENSCJAG00000018809	NOVEL	pseudogene	ENSCJAG00000018809	chromosome:C_jacchus3.2.1:9:1:124281992:1	20990773	20991265	D	<no descrition>
ENSCJAG00000000911	NOVEL	protein_coding	ENSCJAG00000000911	chromosome:C_jacchus3.2.1:11:1:130397257:1	130386718	130387002	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001542}  [Source:UniProtKB/TrEMBL;Acc:F6ZY25]
ENSCJAG00000038051	NOVEL	pseudogene	ENSCJAG00000038051	scaffold:C_jacchus3.2.1:ACFV01178953.1:1:16482:1	5454	8588	D	<no descrition>
ENSCJAG00000015039	KNOWN_BY_PROJECTION	protein_coding	CASKIN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2410198	2420083	D	CASK interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20879]
ENSCJAG00000000001	KNOWN_BY_PROJECTION	protein_coding	KLHL10	scaffold:C_jacchus3.2.1:GL285109.1:1:8937:1	3168	5353	D	kelch-like family member 10 [Source:HGNC Symbol;Acc:HGNC:18829]
ENSCJAG00000023371	NOVEL	protein_coding	ENSCJAG00000023371	chromosome:C_jacchus3.2.1:11:1:130397257:1	125894616	125895377	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041867}  [Source:UniProtKB/TrEMBL;Acc:F7CU81]
ENSCJAG00000035276	NOVEL	protein_coding	ENSCJAG00000035276	scaffold:C_jacchus3.2.1:ACFV01179827.1:1:13245:1	11193	12022	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043690}  [Source:UniProtKB/TrEMBL;Acc:H9KY16]
ENSCJAG00000022195	KNOWN_BY_PROJECTION	protein_coding	ZNHIT2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120756856	120758153	R	zinc finger, HIT-type containing 2 [Source:HGNC Symbol;Acc:HGNC:1177]
ENSCJAG00000022979	KNOWN_BY_PROJECTION	protein_coding	LSM3	chromosome:C_jacchus3.2.1:11:1:130397257:1	123671049	123671583	D	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17874]
ENSCJAG00000018810	KNOWN	protein_coding	RIMKLB	chromosome:C_jacchus3.2.1:9:1:124281992:1	20898453	20981870	D	Beta-citryl-glutamate synthase B {ECO:0000313|EMBL:JAB08096.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042451}  [Source:UniProtKB/TrEMBL;Acc:F6ZQC0]
ENSCJAG00000005685	KNOWN	protein_coding	GATAD2A	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	258998	273731	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010473}  [Source:UniProtKB/TrEMBL;Acc:H9KW95]
ENSCJAG00000021858	NOVEL	protein_coding	ENSCJAG00000021858	chromosome:C_jacchus3.2.1:11:1:130397257:1	119458859	119459245	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040550}  [Source:UniProtKB/TrEMBL;Acc:F7IQZ8]
ENSCJAG00000021863	KNOWN_BY_PROJECTION	protein_coding	BTF3	chromosome:C_jacchus3.2.1:11:1:130397257:1	117987174	117987677	D	basic transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:1125]
ENSCJAG00000011157	NOVEL	protein_coding	ENSCJAG00000011157	scaffold:C_jacchus3.2.1:ACFV01182678.1:1:11142:1	9494	10481	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020560}  [Source:UniProtKB/TrEMBL;Acc:H9KWS6]
ENSCJAG00000021866	KNOWN	protein_coding	ENSCJAG00000021866	chromosome:C_jacchus3.2.1:11:1:130397257:1	116708114	116708580	R	ATP synthase subunit g, mitochondrial {ECO:0000313|EMBL:JAB22735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024382}  [Source:UniProtKB/TrEMBL;Acc:F7GSV8]
ENSCJAG00000017064	NOVEL	pseudogene	ENSCJAG00000017064	scaffold:C_jacchus3.2.1:GL284795.1:1:64237:1	46651	47001	R	<no descrition>
ENSCJAG00000022508	KNOWN_BY_PROJECTION	protein_coding	OR4D11	chromosome:C_jacchus3.2.1:11:1:130397257:1	115028455	115029390	D	olfactory receptor, family 4, subfamily D, member 11 [Source:HGNC Symbol;Acc:HGNC:15174]
ENSCJAG00000003066	NOVEL	pseudogene	ENSCJAG00000003066	scaffold:C_jacchus3.2.1:GL285608.1:1:125556:1	99746	100616	R	<no descrition>
ENSCJAG00000022662	KNOWN_BY_PROJECTION	protein_coding	OR5B2	chromosome:C_jacchus3.2.1:11:1:130397257:1	114223018	114224063	R	olfactory receptor, family 5, subfamily B, member 2 [Source:HGNC Symbol;Acc:HGNC:8323]
ENSCJAG00000015030	KNOWN_BY_PROJECTION	protein_coding	MLST8	chromosome:C_jacchus3.2.1:12:1:121768101:1	2386524	2389382	R	MTOR associated protein, LST8 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24825]
ENSCJAG00000022663	NOVEL	protein_coding	ENSCJAG00000022663	chromosome:C_jacchus3.2.1:11:1:130397257:1	114152261	114153205	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAT1]
ENSCJAG00000012205	KNOWN_BY_PROJECTION	protein_coding	NT5C3B	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	319869	327086	D	5'-nucleotidase, cytosolic IIIB [Source:HGNC Symbol;Acc:HGNC:28300]
ENSCJAG00000022665	NOVEL	protein_coding	ENSCJAG00000022665	chromosome:C_jacchus3.2.1:11:1:130397257:1	114123652	114124599	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAS7]
ENSCJAG00000034462	NOVEL	protein_coding	ENSCJAG00000034462	chromosome:C_jacchus3.2.1:11:1:130397257:1	114106173	114107117	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050613}  [Source:UniProtKB/TrEMBL;Acc:F7H3E4]
ENSCJAG00000002721	KNOWN_BY_PROJECTION	protein_coding	FAM83F	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1385892	1396331	D	family with sequence similarity 83, member F [Source:HGNC Symbol;Acc:HGNC:25148]
ENSCJAG00000022667	KNOWN_BY_PROJECTION	protein_coding	OR10Q1	chromosome:C_jacchus3.2.1:11:1:130397257:1	114023469	114024505	R	olfactory receptor, family 10, subfamily Q, member 1 [Source:HGNC Symbol;Acc:HGNC:15134]
ENSCJAG00000033087	NOVEL	protein_coding	ENSCJAG00000033087	scaffold:C_jacchus3.2.1:ACFV01186576.1:1:9042:1	398	3038	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042563}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ6]
ENSCJAG00000015011	KNOWN	protein_coding	PGP	chromosome:C_jacchus3.2.1:12:1:121768101:1	2381095	2382210	D	Phosphoglycolate phosphatase {ECO:0000313|EMBL:JAB03599.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027650}  [Source:UniProtKB/TrEMBL;Acc:F7GP32]
ENSCJAG00000022672	NOVEL	protein_coding	ENSCJAG00000022672	chromosome:C_jacchus3.2.1:11:1:130397257:1	113808250	113808930	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041265}  [Source:UniProtKB/TrEMBL;Acc:F7HAR3]
ENSCJAG00000022674	KNOWN_BY_PROJECTION	protein_coding	OR5AK2	chromosome:C_jacchus3.2.1:11:1:130397257:1	112870874	112871869	D	olfactory receptor, family 5, subfamily AK, member 2 [Source:HGNC Symbol;Acc:HGNC:15251]
ENSCJAG00000023043	NOVEL	processed_pseudogene	ENSCJAG00000023043	scaffold:C_jacchus3.2.1:GL285442.1:1:80970:1	48984	49571	R	<no descrition>
ENSCJAG00000031485	NOVEL	processed_pseudogene	ENSCJAG00000031485	chromosome:C_jacchus3.2.1:10:1:132174527:1	117228792	117229085	D	<no descrition>
ENSCJAG00000021922	NOVEL	processed_pseudogene	ENSCJAG00000021922	chromosome:C_jacchus3.2.1:10:1:132174527:1	115018777	115019259	D	<no descrition>
ENSCJAG00000021953	NOVEL	processed_pseudogene	ENSCJAG00000021953	chromosome:C_jacchus3.2.1:10:1:132174527:1	112660758	112661216	D	<no descrition>
ENSCJAG00000021952	NOVEL	processed_pseudogene	ENSCJAG00000021952	chromosome:C_jacchus3.2.1:10:1:132174527:1	107053959	107054846	D	<no descrition>
ENSCJAG00000023004	NOVEL	processed_pseudogene	ENSCJAG00000023004	chromosome:C_jacchus3.2.1:10:1:132174527:1	69417862	69418290	D	<no descrition>
ENSCJAG00000023450	NOVEL	processed_pseudogene	ENSCJAG00000023450	chromosome:C_jacchus3.2.1:10:1:132174527:1	59727331	59727810	D	<no descrition>
ENSCJAG00000021994	KNOWN_BY_PROJECTION	protein_coding	DDI1	chromosome:C_jacchus3.2.1:11:1:130397257:1	1646729	1647913	D	DNA-damage inducible 1 homolog 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18961]
ENSCJAG00000035814	NOVEL	pseudogene	ENSCJAG00000035814	scaffold:C_jacchus3.2.1:ACFV01183215.1:1:11631:1	5699	8250	R	<no descrition>
ENSCJAG00000032193	KNOWN_BY_PROJECTION	protein_coding	HRCT1	chromosome:C_jacchus3.2.1:10:1:132174527:1	122645707	122646042	D	histidine rich carboxyl terminus 1 [Source:HGNC Symbol;Acc:HGNC:33872]
ENSCJAG00000022943	NOVEL	protein_coding	ENSCJAG00000022943	chromosome:C_jacchus3.2.1:10:1:132174527:1	122134499	122134918	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041504}  [Source:UniProtKB/TrEMBL;Acc:F7GPN8]
ENSCJAG00000021924	NOVEL	protein_coding	ENSCJAG00000021924	chromosome:C_jacchus3.2.1:10:1:132174527:1	118989137	118989700	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040608}  [Source:UniProtKB/TrEMBL;Acc:F7IGH8]
ENSCJAG00000022381	KNOWN	protein_coding	PNMA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	98941472	98944060	R	Paraneoplastic antigen Ma1 {ECO:0000313|EMBL:JAB08626.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041010}  [Source:UniProtKB/TrEMBL;Acc:F7FH11]
ENSCJAG00000014997	KNOWN_BY_PROJECTION	protein_coding	DNASE1L2	chromosome:C_jacchus3.2.1:12:1:121768101:1	2364213	2364701	R	deoxyribonuclease I-like 2 [Source:HGNC Symbol;Acc:HGNC:2958]
ENSCJAG00000022095	NOVEL	protein_coding	ENSCJAG00000022095	chromosome:C_jacchus3.2.1:10:1:132174527:1	95825790	95826152	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040759}  [Source:UniProtKB/TrEMBL;Acc:F7IT81]
ENSCJAG00000035469	NOVEL	protein_coding	ENSCJAG00000035469	chromosome:C_jacchus3.2.1:9:1:124281992:1	20762023	20762971	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048649}  [Source:UniProtKB/TrEMBL;Acc:F6TAR4]
ENSCJAG00000022098	NOVEL	protein_coding	ENSCJAG00000022098	chromosome:C_jacchus3.2.1:10:1:132174527:1	95077438	95077920	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040762}  [Source:UniProtKB/TrEMBL;Acc:F7IT64]
ENSCJAG00000010028	NOVEL	protein_coding	ENSCJAG00000010028	chromosome:C_jacchus3.2.1:10:1:132174527:1	93845334	93845597	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018417}  [Source:UniProtKB/TrEMBL;Acc:F7H659]
ENSCJAG00000015143	KNOWN_BY_PROJECTION	protein_coding	RPL36A-HNRNPH2	chromosome:C_jacchus3.2.1:10:1:132174527:1	93340689	93340988	R	RPL36A-HNRNPH2 readthrough [Source:HGNC Symbol;Acc:HGNC:48349]
ENSCJAG00000033529	NOVEL	protein_coding	ENSCJAG00000033529	chromosome:C_jacchus3.2.1:10:1:132174527:1	91571533	91572390	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044524}  [Source:UniProtKB/TrEMBL;Acc:F7GJR8]
ENSCJAG00000021878	NOVEL	protein_coding	ENSCJAG00000021878	chromosome:C_jacchus3.2.1:10:1:132174527:1	82038732	82040012	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040570}  [Source:UniProtKB/TrEMBL;Acc:F7INM4]
ENSCJAG00000018899	KNOWN	protein_coding	CLEC4E	chromosome:C_jacchus3.2.1:9:1:124281992:1	20668802	20811368	R	C-type lectin domain family 4 member E {ECO:0000313|EMBL:JAB35862.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035110}  [Source:UniProtKB/TrEMBL;Acc:F7I1U1]
ENSCJAG00000018763	NOVEL	protein_coding	ENSCJAG00000018763	chromosome:C_jacchus3.2.1:10:1:132174527:1	83158251	83159335	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034841}  [Source:UniProtKB/TrEMBL;Acc:F7IS33]
ENSCJAG00000021877	NOVEL	protein_coding	ENSCJAG00000021877	chromosome:C_jacchus3.2.1:10:1:132174527:1	80246943	80247104	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040569}  [Source:UniProtKB/TrEMBL;Acc:F7IQW0]
ENSCJAG00000022926	KNOWN_BY_PROJECTION	protein_coding	SNRPG	chromosome:C_jacchus3.2.1:10:1:132174527:1	74973007	74973417	D	small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163]
ENSCJAG00000022603	KNOWN_BY_PROJECTION	protein_coding	BLOC1S1	chromosome:C_jacchus3.2.1:10:1:132174527:1	74118686	74119183	D	biogenesis of lysosomal organelles complex-1, subunit 1 [Source:HGNC Symbol;Acc:HGNC:4200]
ENSCJAG00000022559	NOVEL	protein_coding	ENSCJAG00000022559	chromosome:C_jacchus3.2.1:10:1:132174527:1	74061781	74062179	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041160}  [Source:UniProtKB/TrEMBL;Acc:F7DX09]
ENSCJAG00000023216	KNOWN_BY_PROJECTION	protein_coding	PYDC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	55577275	55577544	D	PYD (pyrin domain) containing 1 [Source:HGNC Symbol;Acc:HGNC:30261]
ENSCJAG00000032136	NOVEL	protein_coding	ENSCJAG00000032136	chromosome:C_jacchus3.2.1:10:1:132174527:1	54509565	54509663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044367}  [Source:UniProtKB/TrEMBL;Acc:F7FJ33]
ENSCJAG00000018913	KNOWN_BY_PROJECTION	protein_coding	CLEC4D	chromosome:C_jacchus3.2.1:9:1:124281992:1	20627690	20644657	D	C-type lectin domain family 4, member D [Source:HGNC Symbol;Acc:HGNC:14554]
ENSCJAG00000007548	NOVEL	pseudogene	ENSCJAG00000007548	chromosome:C_jacchus3.2.1:9:1:124281992:1	20537316	20538049	R	<no descrition>
ENSCJAG00000002238	NOVEL	pseudogene	ENSCJAG00000002238	scaffold:C_jacchus3.2.1:GL284791.1:1:20931:1	8770	9050	R	<no descrition>
ENSCJAG00000011502	NOVEL	pseudogene	ENSCJAG00000011502	scaffold:C_jacchus3.2.1:ACFV01180158.1:1:17641:1	1454	2359	D	<no descrition>
ENSCJAG00000018929	KNOWN	protein_coding	CLEC4A	chromosome:C_jacchus3.2.1:9:1:124281992:1	20508666	20522094	D	C-type lectin domain family 4 member A isoform 1 {ECO:0000313|EMBL:JAB36026.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035155}  [Source:UniProtKB/TrEMBL;Acc:F7HUR6]
ENSCJAG00000034438	NOVEL	protein_coding	ENSCJAG00000034438	scaffold:C_jacchus3.2.1:GL286172.1:1:41133:1	10876	16272	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047336}  [Source:UniProtKB/TrEMBL;Acc:H9KY92]
ENSCJAG00000023219	KNOWN_BY_PROJECTION	protein_coding	NRL	chromosome:C_jacchus3.2.1:10:1:132174527:1	48124631	48125014	R	neural retina leucine zipper [Source:HGNC Symbol;Acc:HGNC:8002]
ENSCJAG00000023223	KNOWN_BY_PROJECTION	protein_coding	RPS17	chromosome:C_jacchus3.2.1:10:1:132174527:1	46656323	46656775	D	ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC:10397]
ENSCJAG00000023220	NOVEL	protein_coding	ENSCJAG00000023220	chromosome:C_jacchus3.2.1:10:1:132174527:1	47644609	47645004	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041734}  [Source:UniProtKB/TrEMBL;Acc:F7GH67]
ENSCJAG00000009545	NOVEL	protein_coding	ENSCJAG00000009545	chromosome:C_jacchus3.2.1:18:1:47448759:1	34241753	34287212	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041324}  [Source:UniProtKB/TrEMBL;Acc:F7FUF1]
ENSCJAG00000023225	KNOWN_BY_PROJECTION	protein_coding	OR4E2	chromosome:C_jacchus3.2.1:10:1:132174527:1	45800403	45801341	R	olfactory receptor, family 4, subfamily E, member 2 [Source:HGNC Symbol;Acc:HGNC:8297]
ENSCJAG00000013251	NOVEL	processed_pseudogene	ENSCJAG00000013251	chromosome:C_jacchus3.2.1:22:1:49145316:1	36551723	36552199	R	<no descrition>
ENSCJAG00000012157	KNOWN_BY_PROJECTION	protein_coding	P3H4	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	340641	342894	D	prolyl 3-hydroxylase family member 4 (non-enzymatic) [Source:HGNC Symbol;Acc:HGNC:16946]
ENSCJAG00000011882	NOVEL	protein_coding	ENSCJAG00000011882	scaffold:C_jacchus3.2.1:ACFV01180075.1:1:13373:1	230	4293	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021829}  [Source:UniProtKB/TrEMBL;Acc:H9KWV2]
ENSCJAG00000022868	NOVEL	processed_pseudogene	ENSCJAG00000022868	chromosome:C_jacchus3.2.1:14:1:108792865:1	71616008	71616436	D	<no descrition>
ENSCJAG00000022838	NOVEL	protein_coding	ENSCJAG00000022838	chromosome:C_jacchus3.2.1:22:1:49145316:1	37997874	37998339	R	<no descrition>
ENSCJAG00000013320	NOVEL	protein_coding	ENSCJAG00000013320	chromosome:C_jacchus3.2.1:22:1:49145316:1	36408037	36408621	R	<no descrition>
ENSCJAG00000022207	NOVEL	protein_coding	ENSCJAG00000022207	chromosome:C_jacchus3.2.1:22:1:49145316:1	32389225	32389533	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040859}  [Source:UniProtKB/TrEMBL;Acc:F7IBK8]
ENSCJAG00000022206	NOVEL	protein_coding	ENSCJAG00000022206	chromosome:C_jacchus3.2.1:22:1:49145316:1	30475779	30476180	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7IBL0]
ENSCJAG00000000449	NOVEL	protein_coding	ENSCJAG00000000449	scaffold:C_jacchus3.2.1:ACFV01177794.1:1:29867:1	8116	9581	R	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:H9KVK8]
ENSCJAG00000033610	KNOWN_BY_PROJECTION	protein_coding	MIA2	scaffold:C_jacchus3.2.1:ACFV01173414.1:1:50887:1	30923	40419	D	melanoma inhibitory activity 2 [Source:HGNC Symbol;Acc:HGNC:18432]
ENSCJAG00000035481	KNOWN_BY_PROJECTION	protein_coding	SDHAF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29791533	29792648	D	succinate dehydrogenase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:33867]
ENSCJAG00000022361	NOVEL	protein_coding	ENSCJAG00000022361	chromosome:C_jacchus3.2.1:22:1:49145316:1	28909053	28909603	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040990}  [Source:UniProtKB/TrEMBL;Acc:F7IT07]
ENSCJAG00000036982	NOVEL	protein_coding	ENSCJAG00000036982	chromosome:C_jacchus3.2.1:22:1:49145316:1	29073963	29074410	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052128}  [Source:UniProtKB/TrEMBL;Acc:F7I2P3]
ENSCJAG00000000483	NOVEL	protein_coding	ENSCJAG00000000483	scaffold:C_jacchus3.2.1:GL285101.1:1:151588:1	53272	63212	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000816}  [Source:UniProtKB/TrEMBL;Acc:H9KVK9]
ENSCJAG00000004061	NOVEL	pseudogene	ENSCJAG00000004061	scaffold:C_jacchus3.2.1:ACFV01195729.1:1:2074:1	10	1997	D	<no descrition>
ENSCJAG00000035319	KNOWN	protein_coding	ENSCJAG00000035319	chromosome:C_jacchus3.2.1:22:1:49145316:1	28365410	28366090	D	Memo-like protein {ECO:0000313|EMBL:ABQ22506.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044208}  [Source:UniProtKB/TrEMBL;Acc:A6MKB5]
ENSCJAG00000034645	NOVEL	protein_coding	ENSCJAG00000034645	scaffold:C_jacchus3.2.1:GL289306.1:1:8293:1	858	2853	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050488}  [Source:UniProtKB/TrEMBL;Acc:H9KYH1]
ENSCJAG00000013746	KNOWN_BY_PROJECTION	protein_coding	PNMAL1	scaffold:C_jacchus3.2.1:GL286264.1:1:57169:1	37325	40574	R	paraneoplastic Ma antigen family-like 1 [Source:HGNC Symbol;Acc:HGNC:25578]
ENSCJAG00000021883	KNOWN_BY_PROJECTION	protein_coding	RGS9BP	chromosome:C_jacchus3.2.1:22:1:49145316:1	27158159	27161008	D	regulator of G protein signaling 9 binding protein [Source:HGNC Symbol;Acc:HGNC:30304]
ENSCJAG00000021882	NOVEL	protein_coding	ENSCJAG00000021882	chromosome:C_jacchus3.2.1:22:1:49145316:1	27142757	27143113	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040574}  [Source:UniProtKB/TrEMBL;Acc:F7INM0]
ENSCJAG00000033293	NOVEL	protein_coding	ENSCJAG00000033293	chromosome:C_jacchus3.2.1:22:1:49145316:1	25452145	25452459	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050977}  [Source:UniProtKB/TrEMBL;Acc:F6T035]
ENSCJAG00000036544	NOVEL	protein_coding	ENSCJAG00000036544	chromosome:C_jacchus3.2.1:22:1:49145316:1	16478403	16478684	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052338}  [Source:UniProtKB/TrEMBL;Acc:F7HKD0]
ENSCJAG00000034649	NOVEL	pseudogene	ENSCJAG00000034649	scaffold:C_jacchus3.2.1:GL286307.1:1:38943:1	36078	37198	D	<no descrition>
ENSCJAG00000023177	KNOWN_BY_PROJECTION	protein_coding	OR10H2	chromosome:C_jacchus3.2.1:22:1:49145316:1	14894519	14895593	D	olfactory receptor, family 10, subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:8173]
ENSCJAG00000022428	KNOWN_BY_PROJECTION	protein_coding	MBD3L1	chromosome:C_jacchus3.2.1:22:1:49145316:1	8454967	8455714	D	methyl-CpG binding domain protein 3-like 1 [Source:HGNC Symbol;Acc:HGNC:15774]
ENSCJAG00000022426	KNOWN_BY_PROJECTION	protein_coding	ACTL9	chromosome:C_jacchus3.2.1:22:1:49145316:1	8376927	8378350	R	actin-like 9 [Source:HGNC Symbol;Acc:HGNC:28494]
ENSCJAG00000035055	NOVEL	protein_coding	ENSCJAG00000035055	chromosome:C_jacchus3.2.1:22:1:49145316:1	2169550	2170293	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047720}  [Source:UniProtKB/TrEMBL;Acc:F7F7Y4]
ENSCJAG00000021776	NOVEL	protein_coding	ENSCJAG00000021776	chromosome:C_jacchus3.2.1:22:1:49145316:1	625487	625963	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040481}  [Source:UniProtKB/TrEMBL;Acc:F7I2G2]
ENSCJAG00000022930	KNOWN	protein_coding	KCNF1	chromosome:C_jacchus3.2.1:14:1:108792865:1	97633529	97635812	R	Potassium voltage-gated channel subfamily F member 1 {ECO:0000313|EMBL:JAB27320.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041491}  [Source:UniProtKB/TrEMBL;Acc:F7H006]
ENSCJAG00000022932	NOVEL	protein_coding	ENSCJAG00000022932	chromosome:C_jacchus3.2.1:14:1:108792865:1	96544950	96545732	R	Cytochrome b-c1 complex subunit Rieske, mitochondrial {ECO:0000256|RuleBase:RU004494}  [Source:UniProtKB/TrEMBL;Acc:F7H002]
ENSCJAG00000022931	NOVEL	protein_coding	ENSCJAG00000022931	chromosome:C_jacchus3.2.1:14:1:108792865:1	97206142	97206621	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041492}  [Source:UniProtKB/TrEMBL;Acc:F7H004]
ENSCJAG00000032633	KNOWN_BY_PROJECTION	protein_coding	MSGN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	90788664	90789233	R	mesogenin 1 [Source:HGNC Symbol;Acc:HGNC:14907]
ENSCJAG00000002980	KNOWN	protein_coding	HAUS2	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	1128812	1150477	D	HAUS augmin-like complex subunit 2 isoform 1 {ECO:0000313|EMBL:JAB02075.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005400}  [Source:UniProtKB/TrEMBL;Acc:H9KVX6]
ENSCJAG00000033585	KNOWN_BY_PROJECTION	protein_coding	ASMTL	scaffold:C_jacchus3.2.1:GL286159.1:1:9412:1	919	4763	R	acetylserotonin O-methyltransferase-like [Source:HGNC Symbol;Acc:HGNC:751]
ENSCJAG00000035079	NOVEL	protein_coding	ENSCJAG00000035079	scaffold:C_jacchus3.2.1:ACFV01193748.1:1:2635:1	1296	1731	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023978}  [Source:UniProtKB/TrEMBL;Acc:H9KWY7]
ENSCJAG00000023373	NOVEL	protein_coding	ENSCJAG00000023373	chromosome:C_jacchus3.2.1:14:1:108792865:1	81604862	81605179	D	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F7CU54]
ENSCJAG00000022154	NOVEL	processed_pseudogene	ENSCJAG00000022154	chromosome:C_jacchus3.2.1:16:1:96796970:1	26147252	26147446	R	<no descrition>
ENSCJAG00000033200	NOVEL	protein_coding	ENSCJAG00000033200	scaffold:C_jacchus3.2.1:ACFV01187641.1:1:10663:1	6392	6856	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047711}  [Source:UniProtKB/TrEMBL;Acc:H9KYA2]
ENSCJAG00000022728	NOVEL	processed_pseudogene	ENSCJAG00000022728	chromosome:C_jacchus3.2.1:18:1:47448759:1	27489071	27490366	D	<no descrition>
ENSCJAG00000033949	NOVEL	pseudogene	ENSCJAG00000033949	scaffold:C_jacchus3.2.1:GL286347.1:1:22754:1	16213	16852	D	<no descrition>
ENSCJAG00000022707	NOVEL	protein_coding	ENSCJAG00000022707	chromosome:C_jacchus3.2.1:16:1:96796970:1	25473633	25474628	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041300}  [Source:UniProtKB/TrEMBL;Acc:F7G775]
ENSCJAG00000022708	NOVEL	protein_coding	ENSCJAG00000022708	chromosome:C_jacchus3.2.1:16:1:96796970:1	22559292	22559678	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041301}  [Source:UniProtKB/TrEMBL;Acc:F7G771]
ENSCJAG00000008149	NOVEL	pseudogene	ENSCJAG00000008149	scaffold:C_jacchus3.2.1:ACFV01178755.1:1:22607:1	5441	6707	R	<no descrition>
ENSCJAG00000022034	KNOWN	protein_coding	RRS1	chromosome:C_jacchus3.2.1:16:1:96796970:1	18751808	18753504	D	Ribosome biogenesis regulatory protein homolog {ECO:0000313|EMBL:JAB17240.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040704}  [Source:UniProtKB/TrEMBL;Acc:F7HZW9]
ENSCJAG00000022053	NOVEL	processed_pseudogene	ENSCJAG00000022053	chromosome:C_jacchus3.2.1:1:1:210400635:1	81166893	81168215	R	<no descrition>
ENSCJAG00000031063	NOVEL	protein_coding	ENSCJAG00000031063	chromosome:C_jacchus3.2.1:16:1:96796970:1	938902	939051	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045623}  [Source:UniProtKB/TrEMBL;Acc:F6QQ61]
ENSCJAG00000017279	NOVEL	protein_coding	ENSCJAG00000017279	scaffold:C_jacchus3.2.1:ACFV01181651.1:1:13159:1	8046	10449	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031785}  [Source:UniProtKB/TrEMBL;Acc:H9KX97]
ENSCJAG00000034156	NOVEL	processed_pseudogene	ENSCJAG00000034156	chromosome:C_jacchus3.2.1:1:1:210400635:1	79517653	79518048	D	<no descrition>
ENSCJAG00000018984	NOVEL	protein_coding	ENSCJAG00000018984	chromosome:C_jacchus3.2.1:9:1:124281992:1	20283301	20295698	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035261}  [Source:UniProtKB/TrEMBL;Acc:F7II86]
ENSCJAG00000007453	KNOWN	protein_coding	IPO13	scaffold:C_jacchus3.2.1:GL285272.1:1:9296:1	1344	8940	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013849}  [Source:UniProtKB/TrEMBL;Acc:H9KWD6]
ENSCJAG00000022849	NOVEL	processed_pseudogene	ENSCJAG00000022849	chromosome:C_jacchus3.2.1:1:1:210400635:1	76075133	76075438	R	<no descrition>
ENSCJAG00000022616	NOVEL	processed_pseudogene	ENSCJAG00000022616	chromosome:C_jacchus3.2.1:1:1:210400635:1	66233691	66234285	R	<no descrition>
ENSCJAG00000022730	NOVEL	protein_coding	ENSCJAG00000022730	chromosome:C_jacchus3.2.1:18:1:47448759:1	31005676	31006830	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041323}  [Source:UniProtKB/TrEMBL;Acc:F7FUF6]
ENSCJAG00000023345	NOVEL	processed_pseudogene	ENSCJAG00000023345	chromosome:C_jacchus3.2.1:1:1:210400635:1	54924090	54925109	R	<no descrition>
ENSCJAG00000031894	NOVEL	protein_coding	ENSCJAG00000031894	scaffold:C_jacchus3.2.1:ACFV01180078.1:1:17979:1	185	3144	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049124}  [Source:UniProtKB/TrEMBL;Acc:H9KYD5]
ENSCJAG00000022729	NOVEL	protein_coding	ENSCJAG00000022729	chromosome:C_jacchus3.2.1:18:1:47448759:1	30807774	30808085	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041322}  [Source:UniProtKB/TrEMBL;Acc:F7FUG5]
ENSCJAG00000021951	NOVEL	processed_pseudogene	ENSCJAG00000021951	chromosome:C_jacchus3.2.1:1:1:210400635:1	46061599	46062201	D	<no descrition>
ENSCJAG00000005056	NOVEL	processed_pseudogene	ENSCJAG00000005056	chromosome:C_jacchus3.2.1:1:1:210400635:1	26793398	26793637	R	<no descrition>
ENSCJAG00000023344	NOVEL	protein_coding	ENSCJAG00000023344	chromosome:C_jacchus3.2.1:18:1:47448759:1	23086118	23086471	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041850}  [Source:UniProtKB/TrEMBL;Acc:F7DCS8]
ENSCJAG00000006179	KNOWN_BY_PROJECTION	protein_coding	FRMPD4	scaffold:C_jacchus3.2.1:ACFV01179706.1:1:24372:1	4456	9949	D	FERM and PDZ domain containing 4 [Source:HGNC Symbol;Acc:HGNC:29007]
ENSCJAG00000021748	NOVEL	processed_pseudogene	ENSCJAG00000021748	chromosome:C_jacchus3.2.1:1:1:210400635:1	14872854	14873144	R	<no descrition>
ENSCJAG00000014934	KNOWN_BY_PROJECTION	protein_coding	ABCA3	chromosome:C_jacchus3.2.1:12:1:121768101:1	2272083	2325871	D	ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
ENSCJAG00000031821	NOVEL	processed_pseudogene	ENSCJAG00000031821	chromosome:C_jacchus3.2.1:1:1:210400635:1	17917655	17918128	R	<no descrition>
ENSCJAG00000023300	NOVEL	processed_pseudogene	ENSCJAG00000023300	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	398740	399033	D	<no descrition>
ENSCJAG00000023048	NOVEL	processed_pseudogene	ENSCJAG00000023048	chromosome:C_jacchus3.2.1:22:1:49145316:1	44097850	44098115	D	<no descrition>
ENSCJAG00000014922	KNOWN_BY_PROJECTION	protein_coding	C16orf59	chromosome:C_jacchus3.2.1:12:1:121768101:1	2163286	2167719	R	chromosome 16 open reading frame 59 [Source:HGNC Symbol;Acc:HGNC:25849]
ENSCJAG00000002534	NOVEL	pseudogene	ENSCJAG00000002534	scaffold:C_jacchus3.2.1:GL289140.1:1:6653:1	1975	3362	D	<no descrition>
ENSCJAG00000005565	KNOWN	protein_coding	ATP13A1	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	424109	437780	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010267}  [Source:UniProtKB/TrEMBL;Acc:H9KW87]
ENSCJAG00000022040	KNOWN_BY_PROJECTION	protein_coding	OR6N2	chromosome:C_jacchus3.2.1:18:1:47448759:1	12497471	12498424	R	olfactory receptor, family 6, subfamily N, member 2 [Source:HGNC Symbol;Acc:HGNC:15035]
ENSCJAG00000022811	NOVEL	protein_coding	ENSCJAG00000022811	chromosome:C_jacchus3.2.1:1:1:210400635:1	73981857	73982192	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041392}  [Source:UniProtKB/TrEMBL;Acc:F7EAQ5]
ENSCJAG00000023248	NOVEL	protein_coding	ENSCJAG00000023248	chromosome:C_jacchus3.2.1:1:1:210400635:1	71293704	71293958	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041762}  [Source:UniProtKB/TrEMBL;Acc:F7FT97]
ENSCJAG00000022041	KNOWN_BY_PROJECTION	protein_coding	OR6N1	chromosome:C_jacchus3.2.1:18:1:47448759:1	12487936	12488963	R	olfactory receptor, family 6, subfamily N, member 1 [Source:HGNC Symbol;Acc:HGNC:15034]
ENSCJAG00000031877	NOVEL	protein_coding	ENSCJAG00000031877	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	196813	198457	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031632}  [Source:UniProtKB/TrEMBL;Acc:H9KX92]
ENSCJAG00000023246	NOVEL	protein_coding	ENSCJAG00000023246	chromosome:C_jacchus3.2.1:1:1:210400635:1	69812413	69812760	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041760}  [Source:UniProtKB/TrEMBL;Acc:F7FTA6]
ENSCJAG00000002850	KNOWN_BY_PROJECTION	protein_coding	MKL1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1792467	1811467	R	megakaryoblastic leukemia (translocation) 1 [Source:HGNC Symbol;Acc:HGNC:14334]
ENSCJAG00000018988	NOVEL	protein_coding	ENSCJAG00000018988	chromosome:C_jacchus3.2.1:9:1:124281992:1	20228563	20258911	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035267}  [Source:UniProtKB/TrEMBL;Acc:F7II81]
ENSCJAG00000000718	NOVEL	pseudogene	ENSCJAG00000000718	scaffold:C_jacchus3.2.1:GL285806.1:1:82370:1	81510	82369	R	<no descrition>
ENSCJAG00000035279	NOVEL	protein_coding	ENSCJAG00000035279	scaffold:C_jacchus3.2.1:GL288678.1:1:9092:1	5051	8535	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046703}  [Source:UniProtKB/TrEMBL;Acc:H9KY75]
ENSCJAG00000020534	NOVEL	pseudogene	ENSCJAG00000020534	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	236141	236562	D	<no descrition>
ENSCJAG00000020530	NOVEL	protein_coding	ENSCJAG00000020530	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	222057	224009	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038148}  [Source:UniProtKB/TrEMBL;Acc:H9KXL5]
ENSCJAG00000004027	NOVEL	protein_coding	ENSCJAG00000004027	scaffold:C_jacchus3.2.1:GL286459.1:1:372756:1	164917	165990	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007314}  [Source:UniProtKB/TrEMBL;Acc:H9KW33]
ENSCJAG00000033724	NOVEL	pseudogene	ENSCJAG00000033724	scaffold:C_jacchus3.2.1:GL286474.1:1:162968:1	14858	15128	R	<no descrition>
ENSCJAG00000031452	NOVEL	protein_coding	ENSCJAG00000031452	scaffold:C_jacchus3.2.1:GL286459.1:1:372756:1	158688	160551	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042375}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ2]
ENSCJAG00000018542	KNOWN_BY_PROJECTION	protein_coding	DHTKD1	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	282394	299357	R	dehydrogenase E1 and transketolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23537]
ENSCJAG00000009647	NOVEL	protein_coding	ENSCJAG00000009647	scaffold:C_jacchus3.2.1:ACFV01201067.1:1:2651:1	1261	2326	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017668}  [Source:UniProtKB/TrEMBL;Acc:H9KWL8]
ENSCJAG00000014910	KNOWN	protein_coding	TBC1D24	chromosome:C_jacchus3.2.1:12:1:121768101:1	2119247	2126671	R	TBC1 domain family member 24 isoform 1 {ECO:0000313|EMBL:JAB07976.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027458}  [Source:UniProtKB/TrEMBL;Acc:F7G5L0]
ENSCJAG00000034807	NOVEL	protein_coding	ENSCJAG00000034807	scaffold:C_jacchus3.2.1:GL285891.1:1:22142:1	6831	7769	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047506}  [Source:UniProtKB/TrEMBL;Acc:H9KY98]
ENSCJAG00000004006	NOVEL	protein_coding	ENSCJAG00000004006	scaffold:C_jacchus3.2.1:GL286459.1:1:372756:1	151127	154726	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007305}  [Source:UniProtKB/TrEMBL;Acc:H9KW31]
ENSCJAG00000018999	NOVEL	protein_coding	ENSCJAG00000018999	chromosome:C_jacchus3.2.1:9:1:124281992:1	20166985	20173162	D	<no descrition>
ENSCJAG00000009416	KNOWN_BY_PROJECTION	protein_coding	SUCO	chromosome:C_jacchus3.2.1:18:1:47448759:1	34081670	34159391	R	SUN domain containing ossification factor [Source:HGNC Symbol;Acc:HGNC:1240]
ENSCJAG00000035127	NOVEL	pseudogene	ENSCJAG00000035127	scaffold:C_jacchus3.2.1:GL286459.1:1:372756:1	149350	149857	D	<no descrition>
ENSCJAG00000005406	KNOWN_BY_PROJECTION	protein_coding	GDF3	chromosome:C_jacchus3.2.1:9:1:124281992:1	20086879	20091867	R	growth differentiation factor 3 [Source:HGNC Symbol;Acc:HGNC:4218]
ENSCJAG00000033272	NOVEL	protein_coding	ENSCJAG00000033272	scaffold:C_jacchus3.2.1:GL286742.1:1:12581:1	9705	11489	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044036}  [Source:UniProtKB/TrEMBL;Acc:H9KY21]
ENSCJAG00000008510	KNOWN_BY_PROJECTION	protein_coding	IL9R	chromosome:C_jacchus3.2.1:Y:1:2853901:1	2819940	2832786	D	interleukin 9 receptor [Source:HGNC Symbol;Acc:HGNC:6030]
ENSCJAG00000022618	NOVEL	protein_coding	ENSCJAG00000022618	chromosome:C_jacchus3.2.1:1:1:210400635:1	68157841	68158503	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041217}  [Source:UniProtKB/TrEMBL;Acc:F7HAX9]
ENSCJAG00000034245	NOVEL	protein_coding	ENSCJAG00000034245	chromosome:C_jacchus3.2.1:9:1:124281992:1	19997158	19999579	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044783}  [Source:UniProtKB/TrEMBL;Acc:F7FHQ5]
ENSCJAG00000005380	NOVEL	pseudogene	ENSCJAG00000005380	chromosome:C_jacchus3.2.1:9:1:124281992:1	19971924	19973259	D	<no descrition>
ENSCJAG00000022047	NOVEL	protein_coding	ENSCJAG00000022047	chromosome:C_jacchus3.2.1:18:1:47448759:1	12276395	12277351	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HXK5]
ENSCJAG00000010895	NOVEL	protein_coding	ENSCJAG00000010895	scaffold:C_jacchus3.2.1:ACFV01180106.1:1:16402:1	4267	5956	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020086}  [Source:UniProtKB/TrEMBL;Acc:H9KWR0]
ENSCJAG00000005378	NOVEL	protein_coding	ENSCJAG00000005378	chromosome:C_jacchus3.2.1:9:1:124281992:1	19939779	19941493	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052236}  [Source:UniProtKB/TrEMBL;Acc:F7ILE8]
ENSCJAG00000006438	KNOWN_BY_PROJECTION	protein_coding	OR10R2	chromosome:C_jacchus3.2.1:18:1:47448759:1	12265263	12266270	D	olfactory receptor, family 10, subfamily R, member 2 [Source:HGNC Symbol;Acc:HGNC:14820]
ENSCJAG00000005327	NOVEL	protein_coding	ENSCJAG00000005327	chromosome:C_jacchus3.2.1:9:1:124281992:1	19858232	19858858	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009734}  [Source:UniProtKB/TrEMBL;Acc:F7GWZ5]
ENSCJAG00000022612	NOVEL	protein_coding	ENSCJAG00000022612	chromosome:C_jacchus3.2.1:1:1:210400635:1	64492296	64492640	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041211}  [Source:UniProtKB/TrEMBL;Acc:F7HAY6]
ENSCJAG00000022611	NOVEL	protein_coding	ENSCJAG00000022611	chromosome:C_jacchus3.2.1:1:1:210400635:1	63148698	63149896	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041210}  [Source:UniProtKB/TrEMBL;Acc:F7HAY8]
ENSCJAG00000023237	KNOWN_BY_PROJECTION	protein_coding	RPL26	chromosome:C_jacchus3.2.1:18:1:47448759:1	11126195	11126632	R	ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
ENSCJAG00000023236	NOVEL	protein_coding	ENSCJAG00000023236	chromosome:C_jacchus3.2.1:18:1:47448759:1	10901249	10901908	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041750}  [Source:UniProtKB/TrEMBL;Acc:F7G5D7]
ENSCJAG00000022721	NOVEL	protein_coding	ENSCJAG00000022721	chromosome:C_jacchus3.2.1:18:1:47448759:1	8090179	8090616	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041314}  [Source:UniProtKB/TrEMBL;Acc:F7G6P4]
ENSCJAG00000014784	KNOWN_BY_PROJECTION	protein_coding	CCNF	chromosome:C_jacchus3.2.1:12:1:121768101:1	1988980	2201286	R	cyclin F [Source:HGNC Symbol;Acc:HGNC:1591]
ENSCJAG00000021719	NOVEL	protein_coding	ENSCJAG00000021719	chromosome:C_jacchus3.2.1:1:1:210400635:1	35846915	35847397	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040431}  [Source:UniProtKB/TrEMBL;Acc:F7IBV3]
ENSCJAG00000035356	NOVEL	protein_coding	ENSCJAG00000035356	chromosome:C_jacchus3.2.1:18:1:47448759:1	34019828	34021333	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044966}  [Source:UniProtKB/TrEMBL;Acc:F7FVP0]
ENSCJAG00000021725	KNOWN	protein_coding	SLITRK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	30682230	30684986	D	SLIT and NTRK-like protein 1 {ECO:0000313|EMBL:JAB18504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040437}  [Source:UniProtKB/TrEMBL;Acc:F7I9M4]
ENSCJAG00000016289	KNOWN_BY_PROJECTION	protein_coding	VAMP7	chromosome:C_jacchus3.2.1:Y:1:2853901:1	2745956	2806225	D	vesicle-associated membrane protein 7 [Source:HGNC Symbol;Acc:HGNC:11486]
ENSCJAG00000022917	KNOWN_BY_PROJECTION	protein_coding	PRR9	chromosome:C_jacchus3.2.1:18:1:47448759:1	7222319	7222669	D	proline rich 9 [Source:HGNC Symbol;Acc:HGNC:32057]
ENSCJAG00000020110	KNOWN_BY_PROJECTION	protein_coding	CCDC168	chromosome:C_jacchus3.2.1:1:1:210400635:1	18091320	18096920	R	coiled-coil domain containing 168 [Source:HGNC Symbol;Acc:HGNC:26851]
ENSCJAG00000023297	NOVEL	protein_coding	ENSCJAG00000023297	chromosome:C_jacchus3.2.1:1:1:210400635:1	14333433	14333645	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041809}  [Source:UniProtKB/TrEMBL;Acc:F7ELI7]
ENSCJAG00000018731	KNOWN	protein_coding	FAM101B	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	184008	187184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034788}  [Source:UniProtKB/TrEMBL;Acc:H9KXF2]
ENSCJAG00000031963	NOVEL	protein_coding	ENSCJAG00000031963	scaffold:C_jacchus3.2.1:ACFV01201294.1:1:2560:1	559	1726	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048095}  [Source:UniProtKB/TrEMBL;Acc:H9KYB1]
ENSCJAG00000010771	KNOWN_BY_PROJECTION	protein_coding	C15orf27	chromosome:C_jacchus3.2.1:Y:1:2853901:1	2374619	2524781	R	chromosome 15 open reading frame 27 [Source:HGNC Symbol;Acc:HGNC:26763]
ENSCJAG00000033542	NOVEL	protein_coding	ENSCJAG00000033542	chromosome:C_jacchus3.2.1:9:1:124281992:1	19680954	19682794	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050739}  [Source:UniProtKB/TrEMBL;Acc:F7DPJ3]
ENSCJAG00000022178	NOVEL	protein_coding	ENSCJAG00000022178	chromosome:C_jacchus3.2.1:18:1:47448759:1	3819853	3820417	D	<no descrition>
ENSCJAG00000022386	NOVEL	protein_coding	ENSCJAG00000022386	chromosome:C_jacchus3.2.1:22:1:49145316:1	47372829	47373755	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041015}  [Source:UniProtKB/TrEMBL;Acc:F7FGZ2]
ENSCJAG00000004377	NOVEL	protein_coding	ENSCJAG00000004377	scaffold:C_jacchus3.2.1:GL285563.1:1:12955:1	414	2035	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007916}  [Source:UniProtKB/TrEMBL;Acc:H9KW40]
ENSCJAG00000035257	NOVEL	protein_coding	ENSCJAG00000035257	chromosome:C_jacchus3.2.1:22:1:49145316:1	46319178	46320195	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050161}  [Source:UniProtKB/TrEMBL;Acc:F7H486]
ENSCJAG00000002367	KNOWN_BY_PROJECTION	protein_coding	GJA8	chromosome:C_jacchus3.2.1:18:1:47448759:1	1594191	1595498	R	gap junction protein, alpha 8, 50kDa [Source:HGNC Symbol;Acc:HGNC:4281]
ENSCJAG00000021904	NOVEL	protein_coding	ENSCJAG00000021904	chromosome:C_jacchus3.2.1:22:1:49145316:1	44657724	44658083	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050782}  [Source:UniProtKB/TrEMBL;Acc:F7HDH9]
ENSCJAG00000031896	NOVEL	protein_coding	ENV	chromosome:C_jacchus3.2.1:22:1:49145316:1	44381804	44383459	D	Envelope glycoprotein {ECO:0000313|EMBL:ACI62863.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051473}  [Source:UniProtKB/TrEMBL;Acc:B6SEI8]
ENSCJAG00000009355	KNOWN	protein_coding	PRDX6	chromosome:C_jacchus3.2.1:18:1:47448759:1	33360020	33368974	R	Peroxiredoxin-6 {ECO:0000313|EMBL:JAB27669.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017152}  [Source:UniProtKB/TrEMBL;Acc:F7ICM8]
ENSCJAG00000014767	NOVEL	protein_coding	ENSCJAG00000014767	chromosome:C_jacchus3.2.1:12:1:121768101:1	1912101	1952591	R	<no descrition>
ENSCJAG00000019990	NOVEL	protein_coding	ENSCJAG00000019990	chromosome:C_jacchus3.2.1:18:1:47448759:1	757091	757471	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047361}  [Source:UniProtKB/TrEMBL;Acc:F7HWY4]
ENSCJAG00000014764	KNOWN_BY_PROJECTION	protein_coding	FAHD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	1905132	1919690	D	fumarylacetoacetate hydrolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14169]
ENSCJAG00000023424	KNOWN	protein_coding	LPAR3	chromosome:C_jacchus3.2.1:7:1:155834243:1	120751901	120752638	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041917}  [Source:UniProtKB/TrEMBL;Acc:F7GZF4]
ENSCJAG00000023449	KNOWN_BY_PROJECTION	protein_coding	CBX1	chromosome:C_jacchus3.2.1:7:1:155834243:1	113875713	113876267	R	chromobox homolog 1 [Source:HGNC Symbol;Acc:HGNC:1551]
ENSCJAG00000009329	KNOWN_BY_PROJECTION	protein_coding	ANKRD45	chromosome:C_jacchus3.2.1:18:1:47448759:1	33246101	33285460	D	ankyrin repeat domain 45 [Source:HGNC Symbol;Acc:HGNC:24786]
ENSCJAG00000022947	NOVEL	protein_coding	ENSCJAG00000022947	chromosome:C_jacchus3.2.1:7:1:155834243:1	108375774	108376458	R	Ribosomal protein L19 {ECO:0000256|RuleBase:RU000574}  [Source:UniProtKB/TrEMBL;Acc:F7GPM8]
ENSCJAG00000005234	NOVEL	protein_coding	ENSCJAG00000005234	chromosome:C_jacchus3.2.1:9:1:124281992:1	19497030	19808494	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009593}  [Source:UniProtKB/TrEMBL;Acc:F7GX87]
ENSCJAG00000022960	NOVEL	protein_coding	ENSCJAG00000022960	chromosome:C_jacchus3.2.1:7:1:155834243:1	104442048	104442489	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041515}  [Source:UniProtKB/TrEMBL;Acc:F7GHR1]
ENSCJAG00000021587	NOVEL	protein_coding	ENSCJAG00000021587	chromosome:C_jacchus3.2.1:7:1:155834243:1	87464223	87464534	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040175}  [Source:UniProtKB/TrEMBL;Acc:F7I0C5]
ENSCJAG00000023336	KNOWN_BY_PROJECTION	protein_coding	HPDL	chromosome:C_jacchus3.2.1:7:1:155834243:1	80147731	80149532	D	4-hydroxyphenylpyruvate dioxygenase-like [Source:HGNC Symbol;Acc:HGNC:28242]
ENSCJAG00000023380	NOVEL	protein_coding	ENSCJAG00000023380	chromosome:C_jacchus3.2.1:7:1:155834243:1	77838298	77839092	D	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7CTR1]
ENSCJAG00000003313	NOVEL	protein_coding	ENSCJAG00000003313	chromosome:C_jacchus3.2.1:7:1:155834243:1	77784310	77785239	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044505}  [Source:UniProtKB/TrEMBL;Acc:F7GR56]
ENSCJAG00000035088	NOVEL	protein_coding	ENSCJAG00000035088	scaffold:C_jacchus3.2.1:GL288781.1:1:15690:1	3479	6933	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028714}  [Source:UniProtKB/TrEMBL;Acc:H9KX53]
ENSCJAG00000033541	NOVEL	protein_coding	ENSCJAG00000033541	chromosome:C_jacchus3.2.1:7:1:155834243:1	74228304	74228795	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013440}  [Source:UniProtKB/TrEMBL;Acc:F6WK02]
ENSCJAG00000015802	NOVEL	protein_coding	ENSCJAG00000015802	chromosome:C_jacchus3.2.1:7:1:155834243:1	73384314	73384433	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029089}  [Source:UniProtKB/TrEMBL;Acc:F7IM52]
ENSCJAG00000023378	NOVEL	protein_coding	ENSCJAG00000023378	chromosome:C_jacchus3.2.1:7:1:155834243:1	70084305	70084568	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041874}  [Source:UniProtKB/TrEMBL;Acc:F7CTS8]
ENSCJAG00000022921	NOVEL	protein_coding	ENSCJAG00000022921	chromosome:C_jacchus3.2.1:7:1:155834243:1	66271448	66271788	R	Ribosomal protein L37 {ECO:0000256|RuleBase:RU000576}  [Source:UniProtKB/TrEMBL;Acc:F7H068]
ENSCJAG00000014742	KNOWN_BY_PROJECTION	protein_coding	IGFALS	chromosome:C_jacchus3.2.1:12:1:121768101:1	1862790	1865971	R	insulin-like growth factor binding protein, acid labile subunit [Source:HGNC Symbol;Acc:HGNC:5468]
ENSCJAG00000009316	NOVEL	protein_coding	ENSCJAG00000009316	chromosome:C_jacchus3.2.1:7:1:155834243:1	61802837	61803025	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017063}  [Source:UniProtKB/TrEMBL;Acc:F7HM54]
ENSCJAG00000008083	NOVEL	protein_coding	ENSCJAG00000008083	scaffold:C_jacchus3.2.1:GL286574.1:1:16901:1	5289	5759	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014926}  [Source:UniProtKB/TrEMBL;Acc:H9KWH3]
ENSCJAG00000001973	NOVEL	protein_coding	ENSCJAG00000001973	scaffold:C_jacchus3.2.1:ACFV01174532.1:1:46352:1	4628	45447	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003580}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ5]
ENSCJAG00000006545	NOVEL	protein_coding	ENSCJAG00000006545	scaffold:C_jacchus3.2.1:ACFV01180719.1:1:14134:1	1591	3883	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012066}  [Source:UniProtKB/TrEMBL;Acc:H9KWC0]
ENSCJAG00000009306	KNOWN	protein_coding	KLHL20	chromosome:C_jacchus3.2.1:18:1:47448759:1	33196799	33231845	R	Kelch-like protein 20 {ECO:0000313|EMBL:JAB07295.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044149}  [Source:UniProtKB/TrEMBL;Acc:F7FYX2]
ENSCJAG00000008312	NOVEL	protein_coding	ENSCJAG00000008312	scaffold:C_jacchus3.2.1:GL286718.1:1:12465:1	314	5764	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015325}  [Source:UniProtKB/TrEMBL;Acc:H9KWI1]
ENSCJAG00000014694	KNOWN	protein_coding	MRPS34	chromosome:C_jacchus3.2.1:12:1:121768101:1	1845862	1846785	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027046}  [Source:UniProtKB/TrEMBL;Acc:F7FFM4]
ENSCJAG00000014687	KNOWN	protein_coding	NME3	chromosome:C_jacchus3.2.1:12:1:121768101:1	1843463	1844338	R	Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}  [Source:UniProtKB/TrEMBL;Acc:F7FUB6]
ENSCJAG00000021977	KNOWN_BY_PROJECTION	protein_coding	PAQR7	chromosome:C_jacchus3.2.1:7:1:155834243:1	59889475	59890842	R	progestin and adipoQ receptor family member VII [Source:HGNC Symbol;Acc:HGNC:23146]
ENSCJAG00000009304	KNOWN	protein_coding	CENPL	chromosome:C_jacchus3.2.1:18:1:47448759:1	33160465	33184678	D	Centromere protein L isoform 2 {ECO:0000313|EMBL:JAB32198.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017040}  [Source:UniProtKB/TrEMBL;Acc:F7HWA0]
ENSCJAG00000023296	NOVEL	protein_coding	ENSCJAG00000023296	chromosome:C_jacchus3.2.1:7:1:155834243:1	58287655	58288086	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041808}  [Source:UniProtKB/TrEMBL;Acc:F7ELK0]
ENSCJAG00000033510	NOVEL	protein_coding	ENSCJAG00000033510	chromosome:C_jacchus3.2.1:7:1:155834243:1	57941292	57941702	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042399}  [Source:UniProtKB/TrEMBL;Acc:F7CMS4]
ENSCJAG00000023244	KNOWN_BY_PROJECTION	protein_coding	RNF186	chromosome:C_jacchus3.2.1:7:1:155834243:1	53825674	53826800	R	ring finger protein 186 [Source:HGNC Symbol;Acc:HGNC:25978]
ENSCJAG00000023430	NOVEL	processed_pseudogene	ENSCJAG00000023430	chromosome:C_jacchus3.2.1:12:1:121768101:1	60951469	60951957	R	<no descrition>
ENSCJAG00000031735	NOVEL	processed_pseudogene	ENSCJAG00000031735	chromosome:C_jacchus3.2.1:12:1:121768101:1	52102998	52103396	R	<no descrition>
ENSCJAG00000023438	NOVEL	processed_pseudogene	ENSCJAG00000023438	chromosome:C_jacchus3.2.1:12:1:121768101:1	51081923	51082837	D	<no descrition>
ENSCJAG00000022312	NOVEL	protein_coding	ENSCJAG00000022312	chromosome:C_jacchus3.2.1:3:1:190850796:1	9804803	9805258	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040952}  [Source:UniProtKB/TrEMBL;Acc:F7HUZ7]
ENSCJAG00000022314	KNOWN_BY_PROJECTION	protein_coding	RNF181	chromosome:C_jacchus3.2.1:3:1:190850796:1	4637249	4637710	R	ring finger protein 181 [Source:HGNC Symbol;Acc:HGNC:28037]
ENSCJAG00000036731	NOVEL	protein_coding	ENSCJAG00000036731	chromosome:C_jacchus3.2.1:12:1:121768101:1	97452919	97453104	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052190}  [Source:UniProtKB/TrEMBL;Acc:F7HVR2]
ENSCJAG00000022973	KNOWN	protein_coding	HPS6	chromosome:C_jacchus3.2.1:12:1:121768101:1	89390435	89393032	D	Hermansky-Pudlak syndrome 6 protein {ECO:0000313|EMBL:JAB04186.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041528}  [Source:UniProtKB/TrEMBL;Acc:F7G6I5]
ENSCJAG00000033686	NOVEL	protein_coding	ENSCJAG00000033686	chromosome:C_jacchus3.2.1:12:1:121768101:1	87862897	87863390	R	<no descrition>
ENSCJAG00000022970	NOVEL	protein_coding	ENSCJAG00000022970	chromosome:C_jacchus3.2.1:12:1:121768101:1	87362251	87363056	D	Actin-related protein 2/3 complex subunit 3 {ECO:0000256|PIRNR:PIRNR016315}  [Source:UniProtKB/TrEMBL;Acc:F7G6K3]
ENSCJAG00000010791	KNOWN_BY_PROJECTION	protein_coding	ETFA	chromosome:C_jacchus3.2.1:Y:1:2853901:1	2269998	2363071	D	electron-transfer-flavoprotein, alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:3481]
ENSCJAG00000033714	KNOWN_BY_PROJECTION	protein_coding	TPM4	chromosome:C_jacchus3.2.1:12:1:121768101:1	87360286	87360981	R	tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
ENSCJAG00000014736	KNOWN	protein_coding	SPSB3	chromosome:C_jacchus3.2.1:12:1:121768101:1	1710413	1854624	R	SPRY domain-containing SOCS box protein 3 {ECO:0000313|EMBL:JAB05275.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027128}  [Source:UniProtKB/TrEMBL;Acc:F7CWP3]
ENSCJAG00000018971	NOVEL	pseudogene	ENSCJAG00000018971	scaffold:C_jacchus3.2.1:GL285178.1:1:21273:1	2937	4189	D	<no descrition>
ENSCJAG00000032770	NOVEL	pseudogene	ENSCJAG00000032770	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	215877	216294	D	<no descrition>
ENSCJAG00000022967	KNOWN	protein_coding	FRAT2	chromosome:C_jacchus3.2.1:12:1:121768101:1	84410189	84412404	R	GSK-3-binding protein FRAT2 {ECO:0000313|EMBL:JAB04911.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041522}  [Source:UniProtKB/TrEMBL;Acc:F7GHD6]
ENSCJAG00000022961	NOVEL	protein_coding	ENSCJAG00000022961	chromosome:C_jacchus3.2.1:12:1:121768101:1	82156268	82157829	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041516}  [Source:UniProtKB/TrEMBL;Acc:F7GHQ5]
ENSCJAG00000018759	NOVEL	protein_coding	ENSCJAG00000018759	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	570583	572940	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034846}  [Source:UniProtKB/TrEMBL;Acc:H9KXF7]
ENSCJAG00000005737	KNOWN_BY_PROJECTION	protein_coding	IFIT2	chromosome:C_jacchus3.2.1:12:1:121768101:1	75920316	75921734	D	interferon-induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]
ENSCJAG00000022330	KNOWN	protein_coding	CH25H	chromosome:C_jacchus3.2.1:12:1:121768101:1	75816060	75817382	R	Cholesterol 25-hydroxylase {ECO:0000313|EMBL:JAB12639.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040970}  [Source:UniProtKB/TrEMBL;Acc:F7HPR9]
ENSCJAG00000018554	KNOWN	protein_coding	SEC61A2	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	217997	258445	R	Protein transport protein Sec61 subunit alpha isoform 2 isoform a {ECO:0000313|EMBL:JAB03777.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034491}  [Source:UniProtKB/TrEMBL;Acc:H9KXE4]
ENSCJAG00000022261	KNOWN_BY_PROJECTION	protein_coding	ATOH7	chromosome:C_jacchus3.2.1:12:1:121768101:1	56047253	56048744	D	atonal homolog 7 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:13907]
ENSCJAG00000022260	KNOWN	protein_coding	ENSCJAG00000022260	chromosome:C_jacchus3.2.1:12:1:121768101:1	55542384	55543366	D	UPF0729 protein C18orf32 {ECO:0000313|EMBL:JAB02324.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040907}  [Source:UniProtKB/TrEMBL;Acc:F7I248]
ENSCJAG00000022216	NOVEL	protein_coding	ENSCJAG00000022216	chromosome:C_jacchus3.2.1:12:1:121768101:1	36155516	36155923	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040868}  [Source:UniProtKB/TrEMBL;Acc:F7I9A9]
ENSCJAG00000023078	NOVEL	processed_pseudogene	ENSCJAG00000023078	chromosome:C_jacchus3.2.1:15:1:98464013:1	61262442	61262936	D	<no descrition>
ENSCJAG00000034427	NOVEL	processed_pseudogene	ENSCJAG00000034427	chromosome:C_jacchus3.2.1:15:1:98464013:1	41399945	41400292	D	<no descrition>
ENSCJAG00000007390	NOVEL	processed_pseudogene	ENSCJAG00000007390	chromosome:C_jacchus3.2.1:15:1:98464013:1	29146824	29147885	R	<no descrition>
ENSCJAG00000037711	NOVEL	processed_pseudogene	ENSCJAG00000037711	chromosome:C_jacchus3.2.1:15:1:98464013:1	25284078	25284461	D	<no descrition>
ENSCJAG00000021828	NOVEL	processed_pseudogene	ENSCJAG00000021828	chromosome:C_jacchus3.2.1:15:1:98464013:1	20455432	20456167	R	<no descrition>
ENSCJAG00000033609	NOVEL	processed_pseudogene	ENSCJAG00000033609	chromosome:C_jacchus3.2.1:15:1:98464013:1	18436108	18436503	R	<no descrition>
ENSCJAG00000005520	KNOWN_BY_PROJECTION	protein_coding	PLAC9	scaffold:C_jacchus3.2.1:GL285591.1:1:18142:1	1343	3657	D	placenta-specific 9 [Source:HGNC Symbol;Acc:HGNC:19255]
ENSCJAG00000023082	NOVEL	protein_coding	ENSCJAG00000023082	chromosome:C_jacchus3.2.1:15:1:98464013:1	66996570	66997154	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041615}  [Source:UniProtKB/TrEMBL;Acc:F7DVA9]
ENSCJAG00000011300	NOVEL	protein_coding	ENSCJAG00000011300	scaffold:C_jacchus3.2.1:GL285904.1:1:85863:1	10649	16918	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020800}  [Source:UniProtKB/TrEMBL;Acc:H9KWT5]
ENSCJAG00000022985	NOVEL	protein_coding	ENSCJAG00000022985	chromosome:C_jacchus3.2.1:15:1:98464013:1	56719554	56720348	R	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7FU05]
ENSCJAG00000005153	KNOWN_BY_PROJECTION	protein_coding	DDX11	chromosome:C_jacchus3.2.1:9:1:124281992:1	19435393	19466397	R	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 [Source:HGNC Symbol;Acc:HGNC:2736]
ENSCJAG00000032208	NOVEL	protein_coding	ENSCJAG00000032208	scaffold:C_jacchus3.2.1:ACFV01190878.1:1:5264:1	2204	3394	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049183}  [Source:UniProtKB/TrEMBL;Acc:H9KYD6]
ENSCJAG00000022821	NOVEL	protein_coding	ENSCJAG00000022821	chromosome:C_jacchus3.2.1:15:1:98464013:1	39032505	39034342	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041402}  [Source:UniProtKB/TrEMBL;Acc:F7DFE2]
ENSCJAG00000003099	NOVEL	protein_coding	ENSCJAG00000003099	scaffold:C_jacchus3.2.1:GL285906.1:1:81395:1	31905	33147	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005616}  [Source:UniProtKB/TrEMBL;Acc:H9KVZ7]
ENSCJAG00000022296	NOVEL	protein_coding	ENSCJAG00000022296	chromosome:C_jacchus3.2.1:15:1:98464013:1	36094144	36094275	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040943}  [Source:UniProtKB/TrEMBL;Acc:F7HV29]
ENSCJAG00000022297	NOVEL	protein_coding	ENSCJAG00000022297	chromosome:C_jacchus3.2.1:15:1:98464013:1	33888784	33889666	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040944}  [Source:UniProtKB/TrEMBL;Acc:F7HV27]
ENSCJAG00000007845	KNOWN	protein_coding	COPS3	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	28620	43211	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014672}  [Source:UniProtKB/TrEMBL;Acc:H9KWG9]
ENSCJAG00000010374	NOVEL	protein_coding	ENSCJAG00000010374	scaffold:C_jacchus3.2.1:ACFV01181611.1:1:14277:1	103	14168	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019113}  [Source:UniProtKB/TrEMBL;Acc:H9KWN4]
ENSCJAG00000005700	KNOWN_BY_PROJECTION	protein_coding	IQCF6	chromosome:C_jacchus3.2.1:15:1:98464013:1	27513751	27514178	R	IQ motif containing F6 [Source:HGNC Symbol;Acc:HGNC:35158]
ENSCJAG00000032702	NOVEL	protein_coding	ENSCJAG00000032702	scaffold:C_jacchus3.2.1:GL286219.1:1:94819:1	80728	81633	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037730}  [Source:UniProtKB/TrEMBL;Acc:H9KXK8]
ENSCJAG00000021835	NOVEL	protein_coding	ENSCJAG00000021835	chromosome:C_jacchus3.2.1:15:1:98464013:1	25828999	25829724	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040536}  [Source:UniProtKB/TrEMBL;Acc:F7ITE8]
ENSCJAG00000034025	NOVEL	protein_coding	ENSCJAG00000034025	chromosome:C_jacchus3.2.1:15:1:98464013:1	24993240	24993611	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040451}  [Source:UniProtKB/TrEMBL;Acc:F7I771]
ENSCJAG00000021834	KNOWN_BY_PROJECTION	protein_coding	UCN2	chromosome:C_jacchus3.2.1:15:1:98464013:1	24251663	24252001	R	urocortin 2 [Source:HGNC Symbol;Acc:HGNC:18414]
ENSCJAG00000005527	KNOWN_BY_PROJECTION	protein_coding	ZNF14	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	476641	493545	R	zinc finger protein 14 [Source:HGNC Symbol;Acc:HGNC:12924]
ENSCJAG00000032394	KNOWN_BY_PROJECTION	protein_coding	RPS10	chromosome:C_jacchus3.2.1:15:1:98464013:1	23519952	23520502	R	ribosomal protein S10 [Source:HGNC Symbol;Acc:HGNC:10383]
ENSCJAG00000021833	NOVEL	protein_coding	ENSCJAG00000021833	chromosome:C_jacchus3.2.1:15:1:98464013:1	23463637	23464101	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040534}  [Source:UniProtKB/TrEMBL;Acc:F7HJV2]
ENSCJAG00000001834	KNOWN	protein_coding	ZNF501	chromosome:C_jacchus3.2.1:15:1:98464013:1	20420013	20420828	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047638}; Zinc finger protein 501 {ECO:0000313|EMBL:JAB38854.1}  [Source:UniProtKB/TrEMBL;Acc:F7GXK3]
ENSCJAG00000001698	KNOWN_BY_PROJECTION	protein_coding	CYP8B1	chromosome:C_jacchus3.2.1:15:1:98464013:1	18551814	18553380	R	cytochrome P450, family 8, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2653]
ENSCJAG00000000505	NOVEL	protein_coding	ENSCJAG00000000505	scaffold:C_jacchus3.2.1:ACFV01185151.1:1:9987:1	5868	8479	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000861}  [Source:UniProtKB/TrEMBL;Acc:H9KVL0]
ENSCJAG00000021826	KNOWN_BY_PROJECTION	protein_coding	ACKR2	chromosome:C_jacchus3.2.1:15:1:98464013:1	18536876	18538191	D	atypical chemokine receptor 2 [Source:HGNC Symbol;Acc:HGNC:1565]
ENSCJAG00000001608	NOVEL	protein_coding	ENSCJAG00000001608	scaffold:C_jacchus3.2.1:GL286219.1:1:94819:1	83179	85975	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002876}  [Source:UniProtKB/TrEMBL;Acc:H9KVP4]
ENSCJAG00000000883	NOVEL	pseudogene	ENSCJAG00000000883	scaffold:C_jacchus3.2.1:GL285298.1:1:36172:1	16997	17499	D	<no descrition>
ENSCJAG00000022226	KNOWN_BY_PROJECTION	protein_coding	CPN2	chromosome:C_jacchus3.2.1:15:1:98464013:1	16020061	16021695	R	carboxypeptidase N, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2313]
ENSCJAG00000002420	NOVEL	protein_coding	ENSCJAG00000002420	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	572342	610016	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004402}  [Source:UniProtKB/TrEMBL;Acc:H9KVT9]
ENSCJAG00000019472	NOVEL	protein_coding	ENSCJAG00000019472	scaffold:C_jacchus3.2.1:GL286217.1:1:167161:1	152148	157636	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036180}  [Source:UniProtKB/TrEMBL;Acc:H9KXI5]
ENSCJAG00000033846	NOVEL	protein_coding	ENSCJAG00000033846	scaffold:C_jacchus3.2.1:GL285013.1:1:79584:1	42394	43444	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051839}  [Source:UniProtKB/TrEMBL;Acc:H9KYK4]
ENSCJAG00000009099	NOVEL	protein_coding	ENSCJAG00000009099	chromosome:C_jacchus3.2.1:18:1:47448759:1	32675456	32676737	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016679}  [Source:UniProtKB/TrEMBL;Acc:F6VMY1]
ENSCJAG00000033369	NOVEL	protein_coding	ENSCJAG00000033369	scaffold:C_jacchus3.2.1:GL285293.1:1:8522:1	1788	2189	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041396}  [Source:UniProtKB/TrEMBL;Acc:H9KXU4]
ENSCJAG00000009097	NOVEL	protein_coding	ENSCJAG00000009097	chromosome:C_jacchus3.2.1:18:1:47448759:1	32165279	32166115	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016668}  [Source:UniProtKB/TrEMBL;Acc:F6W6Y2]
ENSCJAG00000036200	NOVEL	protein_coding	ENSCJAG00000036200	chromosome:C_jacchus3.2.1:13:1:117903854:1	117708043	117708171	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052129}  [Source:UniProtKB/TrEMBL;Acc:F7I2P2]
ENSCJAG00000034383	NOVEL	protein_coding	ENSCJAG00000034383	chromosome:C_jacchus3.2.1:13:1:117903854:1	98557327	98558778	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049244}  [Source:UniProtKB/TrEMBL;Acc:F6VHE3]
ENSCJAG00000022877	KNOWN	protein_coding	MC4R	chromosome:C_jacchus3.2.1:13:1:117903854:1	98274349	98275782	R	Melanocortin 4 receptor {ECO:0000313|EMBL:ABW94915.1}; Melanocortin receptor 4 {ECO:0000313|EMBL:JAB14210.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041448}  [Source:UniProtKB/TrEMBL;Acc:A8QXP8]
ENSCJAG00000022345	NOVEL	protein_coding	ENSCJAG00000022345	chromosome:C_jacchus3.2.1:13:1:117903854:1	87497425	87498242	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043015}  [Source:UniProtKB/TrEMBL;Acc:F7HYT0]
ENSCJAG00000010868	KNOWN_BY_PROJECTION	protein_coding	SCAPER	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1691591	2223258	D	S-phase cyclin A-associated protein in the ER [Source:HGNC Symbol;Acc:HGNC:13081]
ENSCJAG00000035141	NOVEL	processed_pseudogene	ENSCJAG00000035141	chromosome:C_jacchus3.2.1:X:1:142054208:1	91518126	91518986	R	<no descrition>
ENSCJAG00000022740	NOVEL	processed_pseudogene	ENSCJAG00000022740	chromosome:C_jacchus3.2.1:X:1:142054208:1	83992917	83993552	R	<no descrition>
ENSCJAG00000023044	NOVEL	processed_pseudogene	ENSCJAG00000023044	chromosome:C_jacchus3.2.1:X:1:142054208:1	60954556	60954861	D	<no descrition>
ENSCJAG00000032661	NOVEL	processed_pseudogene	ENSCJAG00000032661	chromosome:C_jacchus3.2.1:X:1:142054208:1	58171925	58172599	D	<no descrition>
ENSCJAG00000022304	NOVEL	processed_pseudogene	ENSCJAG00000022304	chromosome:C_jacchus3.2.1:X:1:142054208:1	56102596	56103060	D	<no descrition>
ENSCJAG00000023327	NOVEL	processed_pseudogene	ENSCJAG00000023327	chromosome:C_jacchus3.2.1:X:1:142054208:1	54588939	54589412	D	<no descrition>
ENSCJAG00000031713	NOVEL	processed_pseudogene	ENSCJAG00000031713	chromosome:C_jacchus3.2.1:X:1:142054208:1	52388683	52388925	D	<no descrition>
ENSCJAG00000014532	KNOWN_BY_PROJECTION	protein_coding	IFT140	chromosome:C_jacchus3.2.1:12:1:121768101:1	1576374	1680501	R	intraflagellar transport 140 [Source:HGNC Symbol;Acc:HGNC:29077]
ENSCJAG00000023431	NOVEL	protein_coding	ENSCJAG00000023431	chromosome:C_jacchus3.2.1:X:1:142054208:1	102858214	102858798	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041924}  [Source:UniProtKB/TrEMBL;Acc:F7GUF1]
ENSCJAG00000017605	NOVEL	protein_coding	ENSCJAG00000017605	chromosome:C_jacchus3.2.1:X:1:142054208:1	101382856	101383302	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032435}  [Source:UniProtKB/TrEMBL;Acc:F7DZZ6]
ENSCJAG00000010562	NOVEL	protein_coding	ENSCJAG00000010562	scaffold:C_jacchus3.2.1:GL285013.1:1:79584:1	21604	32697	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019508}  [Source:UniProtKB/TrEMBL;Acc:H9KWN9]
ENSCJAG00000032325	NOVEL	protein_coding	ENSCJAG00000032325	chromosome:C_jacchus3.2.1:X:1:142054208:1	97904513	97904758	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043905}  [Source:UniProtKB/TrEMBL;Acc:F7HY70]
ENSCJAG00000011305	KNOWN_BY_PROJECTION	protein_coding	APH1B	scaffold:C_jacchus3.2.1:GL285434.1:1:81982:1	4865	14275	D	APH1B gamma secretase subunit [Source:HGNC Symbol;Acc:HGNC:24080]
ENSCJAG00000034428	KNOWN	protein_coding	NGFRAP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	92131871	92132754	D	Protein BEX3 isoform b {ECO:0000313|EMBL:JAB37787.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006203}  [Source:UniProtKB/TrEMBL;Acc:F7H6N3]
ENSCJAG00000000557	KNOWN_BY_PROJECTION	protein_coding	IGLL1	scaffold:C_jacchus3.2.1:GL284746.1:1:18912:1	9272	18277	R	immunoglobulin lambda-like polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:5870]
ENSCJAG00000034134	KNOWN	protein_coding	MOG	scaffold:C_jacchus3.2.1:GL286223.1:1:132061:1	46907	49550	D	Myelin-oligodendrocyte glycoprotein  [Source:UniProtKB/Swiss-Prot;Acc:Q29ZQ1]
ENSCJAG00000036572	KNOWN	protein_coding	TCEAL8	chromosome:C_jacchus3.2.1:X:1:142054208:1	92007612	92007953	R	Transcription elongation factor A protein-like 8 {ECO:0000313|EMBL:JAB08928.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006227}  [Source:UniProtKB/TrEMBL;Acc:F7H1K3]
ENSCJAG00000019183	NOVEL	protein_coding	ENSCJAG00000019183	scaffold:C_jacchus3.2.1:ACFV01195674.1:1:2255:1	92	670	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035602}  [Source:UniProtKB/TrEMBL;Acc:H9KXH8]
ENSCJAG00000015579	NOVEL	protein_coding	ENSCJAG00000015579	scaffold:C_jacchus3.2.1:ACFV01198323.1:1:2719:1	418	1695	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028686}  [Source:UniProtKB/TrEMBL;Acc:H9KX52]
ENSCJAG00000009018	KNOWN_BY_PROJECTION	protein_coding	RABGAP1L	chromosome:C_jacchus3.2.1:18:1:47448759:1	32057493	32818502	R	RAB GTPase activating protein 1-like [Source:HGNC Symbol;Acc:HGNC:24663]
ENSCJAG00000014626	NOVEL	protein_coding	ENSCJAG00000014626	chromosome:C_jacchus3.2.1:12:1:121768101:1	1571554	1769979	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026919}  [Source:UniProtKB/TrEMBL;Acc:F7HUU1]
ENSCJAG00000002950	NOVEL	protein_coding	ENSCJAG00000002950	scaffold:C_jacchus3.2.1:ACFV01184078.1:1:10002:1	5639	7618	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024307}  [Source:UniProtKB/TrEMBL;Acc:H9KWZ4]
ENSCJAG00000002055	NOVEL	protein_coding	ENSCJAG00000002055	scaffold:C_jacchus3.2.1:ACFV01180187.1:1:13523:1	741	8564	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003708}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ9]
ENSCJAG00000023316	NOVEL	protein_coding	ENSCJAG00000023316	chromosome:C_jacchus3.2.1:X:1:142054208:1	81513882	81514745	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041822}  [Source:UniProtKB/TrEMBL;Acc:F7E8S0]
ENSCJAG00000023315	NOVEL	protein_coding	ENSCJAG00000023315	chromosome:C_jacchus3.2.1:X:1:142054208:1	80865299	80865700	D	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7E8S4]
ENSCJAG00000023314	KNOWN_BY_PROJECTION	protein_coding	PTPLB	chromosome:C_jacchus3.2.1:X:1:142054208:1	79305624	79306769	D	protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b [Source:HGNC Symbol;Acc:HGNC:9640]
ENSCJAG00000002559	KNOWN_BY_PROJECTION	protein_coding	PMM1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	770625	776107	D	phosphomannomutase 1 [Source:HGNC Symbol;Acc:HGNC:9114]
ENSCJAG00000009399	NOVEL	pseudogene	ENSCJAG00000009399	scaffold:C_jacchus3.2.1:GL286788.1:1:9579:1	5810	7100	D	<no descrition>
ENSCJAG00000009938	NOVEL	pseudogene	ENSCJAG00000009938	scaffold:C_jacchus3.2.1:ACFV01197589.1:1:3644:1	940	1406	R	<no descrition>
ENSCJAG00000034587	NOVEL	protein_coding	ENSCJAG00000034587	chromosome:C_jacchus3.2.1:X:1:142054208:1	61495155	61496381	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022984}  [Source:UniProtKB/TrEMBL;Acc:F7I5U4]
ENSCJAG00000005091	KNOWN_BY_PROJECTION	protein_coding	CD163L1	chromosome:C_jacchus3.2.1:9:1:124281992:1	19256481	19362048	R	CD163 molecule-like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
ENSCJAG00000023031	KNOWN	protein_coding	SPIN4	chromosome:C_jacchus3.2.1:X:1:142054208:1	55756422	55760535	R	Spindlin-4 {ECO:0000313|EMBL:JAB16397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041577}  [Source:UniProtKB/TrEMBL;Acc:F7FEK0]
ENSCJAG00000023045	NOVEL	protein_coding	ENSCJAG00000023045	chromosome:C_jacchus3.2.1:X:1:142054208:1	60571871	60572640	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043203}  [Source:UniProtKB/TrEMBL;Acc:F7IF34]
ENSCJAG00000010987	KNOWN	protein_coding	RCN2	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1616816	1635431	R	Reticulocalbin-2 isoform a {ECO:0000313|EMBL:JAB06172.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020375}  [Source:UniProtKB/TrEMBL;Acc:F7GK69]
ENSCJAG00000023437	KNOWN	protein_coding	MAGEH1	chromosome:C_jacchus3.2.1:X:1:142054208:1	53351361	53352815	D	Melanoma-associated antigen H1 {ECO:0000313|EMBL:JAB10094.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041930}  [Source:UniProtKB/TrEMBL;Acc:F7GU83]
ENSCJAG00000011052	NOVEL	pseudogene	ENSCJAG00000011052	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1586217	1587013	D	<no descrition>
ENSCJAG00000022348	NOVEL	processed_pseudogene	ENSCJAG00000022348	chromosome:C_jacchus3.2.1:19:1:49578535:1	21710173	21710658	R	<no descrition>
ENSCJAG00000003606	NOVEL	pseudogene	ENSCJAG00000003606	scaffold:C_jacchus3.2.1:GL284751.1:1:8327:1	1	485	R	<no descrition>
ENSCJAG00000008989	KNOWN	protein_coding	CACYBP	chromosome:C_jacchus3.2.1:18:1:47448759:1	31995205	32008799	R	Calcyclin-binding protein isoform 1 {ECO:0000313|EMBL:JAB02019.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016496}  [Source:UniProtKB/TrEMBL;Acc:F6V397]
ENSCJAG00000014350	NOVEL	pseudogene	ENSCJAG00000014350	scaffold:C_jacchus3.2.1:ACFV01199535.1:1:2090:1	374	1329	R	<no descrition>
ENSCJAG00000019668	NOVEL	protein_coding	ENSCJAG00000019668	scaffold:C_jacchus3.2.1:GL285448.1:1:48696:1	16623	17234	D	40S ribosomal protein S8 {ECO:0000256|RuleBase:RU000669}  [Source:UniProtKB/TrEMBL;Acc:H9KXJ2]
ENSCJAG00000023052	NOVEL	processed_pseudogene	ENSCJAG00000023052	chromosome:C_jacchus3.2.1:19:1:49578535:1	6498634	6499092	R	<no descrition>
ENSCJAG00000037211	NOVEL	pseudogene	ENSCJAG00000037211	scaffold:C_jacchus3.2.1:ACFV01197017.1:1:3677:1	818	2154	D	<no descrition>
ENSCJAG00000005809	KNOWN_BY_PROJECTION	protein_coding	UXS1	scaffold:C_jacchus3.2.1:ACFV01186130.1:1:8628:1	4424	7151	D	UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729]
ENSCJAG00000038042	NOVEL	processed_pseudogene	ENSCJAG00000038042	chromosome:C_jacchus3.2.1:20:1:44557958:1	41765726	41766205	D	<no descrition>
ENSCJAG00000033903	NOVEL	processed_pseudogene	ENSCJAG00000033903	chromosome:C_jacchus3.2.1:21:1:50472720:1	42704882	42705196	R	<no descrition>
ENSCJAG00000021926	NOVEL	protein_coding	ENSCJAG00000021926	chromosome:C_jacchus3.2.1:19:1:49578535:1	26381254	26382006	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040610}  [Source:UniProtKB/TrEMBL;Acc:F7IE61]
ENSCJAG00000032638	NOVEL	protein_coding	ENSCJAG00000032638	chromosome:C_jacchus3.2.1:19:1:49578535:1	24685210	24685818	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044304}  [Source:UniProtKB/TrEMBL;Acc:F7GRI4]
ENSCJAG00000022316	NOVEL	protein_coding	ENSCJAG00000022316	chromosome:C_jacchus3.2.1:19:1:49578535:1	23242197	23242922	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040956}  [Source:UniProtKB/TrEMBL;Acc:F7HUZ1]
ENSCJAG00000021903	NOVEL	protein_coding	ENSCJAG00000021903	chromosome:C_jacchus3.2.1:19:1:49578535:1	17322951	17323380	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045470}  [Source:UniProtKB/TrEMBL;Acc:F6Q412]
ENSCJAG00000023018	NOVEL	protein_coding	ENSCJAG00000023018	chromosome:C_jacchus3.2.1:19:1:49578535:1	16412589	16413131	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041564}  [Source:UniProtKB/TrEMBL;Acc:F7FEX3]
ENSCJAG00000031233	KNOWN_BY_PROJECTION	protein_coding	ANKRD28	scaffold:C_jacchus3.2.1:GL285067.1:1:59576:1	30513	33854	R	ankyrin repeat domain 28 [Source:HGNC Symbol;Acc:HGNC:29024]
ENSCJAG00000032057	NOVEL	protein_coding	ENSCJAG00000032057	chromosome:C_jacchus3.2.1:19:1:49578535:1	13915807	13916137	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012448}  [Source:UniProtKB/TrEMBL;Acc:F7F9Y9]
ENSCJAG00000003207	KNOWN_BY_PROJECTION	protein_coding	SEPN1	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	682631	684238	R	selenoprotein N, 1 [Source:HGNC Symbol;Acc:HGNC:15999]
ENSCJAG00000015733	KNOWN_BY_PROJECTION	protein_coding	FAM71A	chromosome:C_jacchus3.2.1:19:1:49578535:1	12095964	12097739	R	family with sequence similarity 71, member A [Source:HGNC Symbol;Acc:HGNC:26541]
ENSCJAG00000023101	NOVEL	protein_coding	ENSCJAG00000023101	chromosome:C_jacchus3.2.1:19:1:49578535:1	11689802	11690071	D	<no descrition>
ENSCJAG00000036093	NOVEL	protein_coding	ENSCJAG00000036093	chromosome:C_jacchus3.2.1:19:1:49578535:1	6250224	6250346	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052170}  [Source:UniProtKB/TrEMBL;Acc:F7HY06]
ENSCJAG00000034661	NOVEL	protein_coding	ENSCJAG00000034661	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	501122	508468	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031830}  [Source:UniProtKB/TrEMBL;Acc:H9KX99]
ENSCJAG00000038002	NOVEL	protein_coding	ENSCJAG00000038002	chromosome:C_jacchus3.2.1:20:1:44557958:1	44013278	44013962	D	Ribosomal protein L19 {ECO:0000256|RuleBase:RU000574}  [Source:UniProtKB/TrEMBL;Acc:F7IGX0]
ENSCJAG00000022409	NOVEL	protein_coding	ENSCJAG00000022409	chromosome:C_jacchus3.2.1:20:1:44557958:1	43829642	43830066	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041031}  [Source:UniProtKB/TrEMBL;Acc:F7FGV0]
ENSCJAG00000011058	KNOWN_BY_PROJECTION	protein_coding	PSTPIP1	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1523596	1571208	R	proline-serine-threonine phosphatase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9580]
ENSCJAG00000022073	NOVEL	protein_coding	ENSCJAG00000022073	chromosome:C_jacchus3.2.1:20:1:44557958:1	22136524	22136961	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040737}  [Source:UniProtKB/TrEMBL;Acc:F7HV43]
ENSCJAG00000015846	KNOWN_BY_PROJECTION	protein_coding	DDX28	chromosome:C_jacchus3.2.1:20:1:44557958:1	21794050	21796198	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 [Source:HGNC Symbol;Acc:HGNC:17330]
ENSCJAG00000014423	KNOWN_BY_PROJECTION	protein_coding	CLCN7	chromosome:C_jacchus3.2.1:12:1:121768101:1	1509092	1538587	R	chloride channel, voltage-sensitive 7 [Source:HGNC Symbol;Acc:HGNC:2025]
ENSCJAG00000032068	NOVEL	protein_coding	ENSCJAG00000032068	chromosome:C_jacchus3.2.1:20:1:44557958:1	17038056	17039042	R	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}  [Source:UniProtKB/TrEMBL;Acc:F7E1S8]
ENSCJAG00000022608	KNOWN	protein_coding	ENSCJAG00000022608	chromosome:C_jacchus3.2.1:21:1:50472720:1	37164937	37165405	D	H/ACA ribonucleoprotein complex subunit 3 {ECO:0000313|EMBL:JAB03649.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039401}  [Source:UniProtKB/TrEMBL;Acc:F7GPI1]
ENSCJAG00000021872	NOVEL	processed_pseudogene	ENSCJAG00000021872	chromosome:C_jacchus3.2.1:3:1:190850796:1	143753834	143754895	R	<no descrition>
ENSCJAG00000034742	NOVEL	protein_coding	ENSCJAG00000034742	scaffold:C_jacchus3.2.1:GL286350.1:1:15996:1	9133	9738	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051536}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ7]
ENSCJAG00000021869	NOVEL	processed_pseudogene	ENSCJAG00000021869	chromosome:C_jacchus3.2.1:3:1:190850796:1	140253723	140254313	R	<no descrition>
ENSCJAG00000032953	NOVEL	processed_pseudogene	ENSCJAG00000032953	chromosome:C_jacchus3.2.1:3:1:190850796:1	139465354	139465671	D	<no descrition>
ENSCJAG00000021900	NOVEL	processed_pseudogene	ENSCJAG00000021900	chromosome:C_jacchus3.2.1:3:1:190850796:1	137953429	137954763	R	<no descrition>
ENSCJAG00000015569	KNOWN_BY_PROJECTION	protein_coding	OR4C12	scaffold:C_jacchus3.2.1:ACFV01201865.1:1:2511:1	1	797	D	olfactory receptor, family 4, subfamily C, member 12 [Source:HGNC Symbol;Acc:HGNC:15168]
ENSCJAG00000023274	NOVEL	processed_pseudogene	ENSCJAG00000023274	chromosome:C_jacchus3.2.1:3:1:190850796:1	128970361	128970825	R	<no descrition>
ENSCJAG00000034757	NOVEL	processed_pseudogene	ENSCJAG00000034757	chromosome:C_jacchus3.2.1:3:1:190850796:1	123835852	123836377	D	<no descrition>
ENSCJAG00000032054	NOVEL	processed_pseudogene	ENSCJAG00000032054	chromosome:C_jacchus3.2.1:3:1:190850796:1	80791471	80791905	R	<no descrition>
ENSCJAG00000021816	NOVEL	processed_pseudogene	ENSCJAG00000021816	chromosome:C_jacchus3.2.1:3:1:190850796:1	65374689	65374913	R	<no descrition>
ENSCJAG00000021849	NOVEL	processed_pseudogene	ENSCJAG00000021849	chromosome:C_jacchus3.2.1:3:1:190850796:1	61660258	61660604	R	<no descrition>
ENSCJAG00000015697	NOVEL	protein_coding	ENSCJAG00000015697	scaffold:C_jacchus3.2.1:ACFV01180652.1:1:12656:1	4597	6921	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028887}  [Source:UniProtKB/TrEMBL;Acc:H9KX55]
ENSCJAG00000014473	NOVEL	protein_coding	ENSCJAG00000014473	chromosome:C_jacchus3.2.1:3:1:190850796:1	123843639	123844965	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026612}  [Source:UniProtKB/TrEMBL;Acc:F7I253]
ENSCJAG00000022058	NOVEL	protein_coding	ENSCJAG00000022058	chromosome:C_jacchus3.2.1:3:1:190850796:1	121982206	121982535	D	Cytochrome c oxidase subunit 6A, mitochondrial {ECO:0000256|RuleBase:RU004397}  [Source:UniProtKB/TrEMBL;Acc:F7HV88]
ENSCJAG00000017403	NOVEL	protein_coding	ENSCJAG00000017403	scaffold:C_jacchus3.2.1:GL285967.1:1:17948:1	10557	16268	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032093}  [Source:UniProtKB/TrEMBL;Acc:H9KXA9]
ENSCJAG00000022365	NOVEL	processed_pseudogene	ENSCJAG00000022365	chromosome:C_jacchus3.2.1:17:1:74750902:1	69851856	69852317	R	<no descrition>
ENSCJAG00000022057	NOVEL	protein_coding	ENSCJAG00000022057	chromosome:C_jacchus3.2.1:3:1:190850796:1	120401973	120402353	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040721}  [Source:UniProtKB/TrEMBL;Acc:F7HV89]
ENSCJAG00000021765	NOVEL	protein_coding	ENSCJAG00000021765	chromosome:C_jacchus3.2.1:3:1:190850796:1	119071366	119071803	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040470}  [Source:UniProtKB/TrEMBL;Acc:F7I4S3]
ENSCJAG00000032447	NOVEL	processed_pseudogene	ENSCJAG00000032447	chromosome:C_jacchus3.2.1:17:1:74750902:1	62108729	62108914	D	<no descrition>
ENSCJAG00000022204	NOVEL	processed_pseudogene	ENSCJAG00000022204	chromosome:C_jacchus3.2.1:17:1:74750902:1	26214607	26215086	D	<no descrition>
ENSCJAG00000034477	NOVEL	pseudogene	ENSCJAG00000034477	scaffold:C_jacchus3.2.1:GL286372.1:1:25555:1	16509	16885	D	<no descrition>
ENSCJAG00000002994	KNOWN	protein_coding	SNAP23	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	1097153	1098850	D	Synaptosomal-associated protein {ECO:0000256|RuleBase:RU003496}  [Source:UniProtKB/TrEMBL;Acc:H9KVX9]
ENSCJAG00000007158	NOVEL	protein_coding	ENSCJAG00000007158	scaffold:C_jacchus3.2.1:ACFV01181826.1:1:10683:1	4002	9657	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013308}  [Source:UniProtKB/TrEMBL;Acc:H9KWD1]
ENSCJAG00000035438	NOVEL	pseudogene	ENSCJAG00000035438	scaffold:C_jacchus3.2.1:GL287712.1:1:4185:1	3605	4185	R	<no descrition>
ENSCJAG00000031193	NOVEL	pseudogene	ENSCJAG00000031193	scaffold:C_jacchus3.2.1:GL284975.1:1:11177:1	7856	8235	D	<no descrition>
ENSCJAG00000004876	KNOWN_BY_PROJECTION	protein_coding	CLSTN3	chromosome:C_jacchus3.2.1:9:1:124281992:1	19015303	19044958	D	calsyntenin 3 [Source:HGNC Symbol;Acc:HGNC:18371]
ENSCJAG00000008930	KNOWN_BY_PROJECTION	protein_coding	TNN	chromosome:C_jacchus3.2.1:18:1:47448759:1	31862118	31929641	R	tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
ENSCJAG00000004871	KNOWN_BY_PROJECTION	protein_coding	RBP5	chromosome:C_jacchus3.2.1:9:1:124281992:1	19008854	19013801	R	retinol binding protein 5, cellular [Source:HGNC Symbol;Acc:HGNC:15847]
ENSCJAG00000011087	KNOWN	protein_coding	TSPAN3	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1487192	1512074	D	Tetraspanin-3 isoform 1 {ECO:0000313|EMBL:JAB06757.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020490}  [Source:UniProtKB/TrEMBL;Acc:F7HH40]
ENSCJAG00000022499	NOVEL	processed_pseudogene	ENSCJAG00000022499	chromosome:C_jacchus3.2.1:17:1:74750902:1	8705422	8705895	D	<no descrition>
ENSCJAG00000013185	KNOWN_BY_PROJECTION	protein_coding	TSR3	chromosome:C_jacchus3.2.1:12:1:121768101:1	1382805	1385595	R	TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:14175]
ENSCJAG00000023109	NOVEL	protein_coding	ENSCJAG00000023109	chromosome:C_jacchus3.2.1:3:1:190850796:1	117775159	117775888	D	60S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572}  [Source:UniProtKB/TrEMBL;Acc:F7DDV9]
ENSCJAG00000004869	NOVEL	protein_coding	ENSCJAG00000004869	chromosome:C_jacchus3.2.1:9:1:124281992:1	19004742	19006981	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008882}  [Source:UniProtKB/TrEMBL;Acc:F7IF75]
ENSCJAG00000022299	NOVEL	processed_pseudogene	ENSCJAG00000022299	chromosome:C_jacchus3.2.1:19:1:49578535:1	32079261	32079779	D	<no descrition>
ENSCJAG00000008671	NOVEL	protein_coding	ENSCJAG00000008671	scaffold:C_jacchus3.2.1:GL288437.1:1:14902:1	3822	4835	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015947}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ2]
ENSCJAG00000009706	KNOWN_BY_PROJECTION	protein_coding	XIRP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	69665320	69670788	R	xin actin-binding repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:14301]
ENSCJAG00000012321	NOVEL	protein_coding	ENSCJAG00000012321	scaffold:C_jacchus3.2.1:ACFV01181491.1:1:11553:1	6746	8553	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022566}  [Source:UniProtKB/TrEMBL;Acc:H9KWX3]
ENSCJAG00000008665	NOVEL	pseudogene	ENSCJAG00000008665	scaffold:C_jacchus3.2.1:GL288437.1:1:14902:1	1483	2367	D	<no descrition>
ENSCJAG00000022768	NOVEL	protein_coding	ENSCJAG00000022768	chromosome:C_jacchus3.2.1:17:1:74750902:1	63383172	63383615	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041351}  [Source:UniProtKB/TrEMBL;Acc:F7F2B4]
ENSCJAG00000023111	KNOWN_BY_PROJECTION	protein_coding	GK2	chromosome:C_jacchus3.2.1:3:1:190850796:1	115138520	115140396	D	glycerol kinase 2 [Source:HGNC Symbol;Acc:HGNC:4291]
ENSCJAG00000011124	KNOWN_BY_PROJECTION	protein_coding	PEAK1	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1388111	1448585	D	pseudopodium-enriched atypical kinase 1 [Source:HGNC Symbol;Acc:HGNC:29431]
ENSCJAG00000002410	KNOWN_BY_PROJECTION	protein_coding	C1R	chromosome:C_jacchus3.2.1:9:1:124281992:1	18960158	18991552	R	complement component 1, r subcomponent [Source:HGNC Symbol;Acc:HGNC:1246]
ENSCJAG00000000561	NOVEL	protein_coding	ENSCJAG00000000561	scaffold:C_jacchus3.2.1:GL286266.1:1:85070:1	21671	22527	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000970}  [Source:UniProtKB/TrEMBL;Acc:H9KVL5]
ENSCJAG00000022023	NOVEL	protein_coding	ENSCJAG00000022023	chromosome:C_jacchus3.2.1:3:1:190850796:1	107229920	107230204	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040693}  [Source:UniProtKB/TrEMBL;Acc:F7I4M6]
ENSCJAG00000023363	NOVEL	protein_coding	ENSCJAG00000023363	chromosome:C_jacchus3.2.1:17:1:74750902:1	49611242	49612720	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041859}  [Source:UniProtKB/TrEMBL;Acc:F7CUT5]
ENSCJAG00000023364	NOVEL	protein_coding	ENSCJAG00000023364	chromosome:C_jacchus3.2.1:17:1:74750902:1	56065522	56066004	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041860}  [Source:UniProtKB/TrEMBL;Acc:F7CUE1]
ENSCJAG00000022024	NOVEL	protein_coding	ENSCJAG00000022024	chromosome:C_jacchus3.2.1:3:1:190850796:1	107191990	107192463	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040694}  [Source:UniProtKB/TrEMBL;Acc:F7I4M5]
ENSCJAG00000023362	NOVEL	protein_coding	ENSCJAG00000023362	chromosome:C_jacchus3.2.1:17:1:74750902:1	47077455	47077925	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041858}  [Source:UniProtKB/TrEMBL;Acc:F7CUU9]
ENSCJAG00000020667	KNOWN_BY_PROJECTION	protein_coding	HRASLS	scaffold:C_jacchus3.2.1:ACFV01179325.1:1:21043:1	6998	15070	D	HRAS-like suppressor [Source:HGNC Symbol;Acc:HGNC:14922]
ENSCJAG00000022027	NOVEL	protein_coding	ENSCJAG00000022027	chromosome:C_jacchus3.2.1:3:1:190850796:1	101406320	101406706	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040697}  [Source:UniProtKB/TrEMBL;Acc:F7I4M3]
ENSCJAG00000023360	NOVEL	protein_coding	ENSCJAG00000023360	chromosome:C_jacchus3.2.1:17:1:74750902:1	38384567	38384929	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041856}  [Source:UniProtKB/TrEMBL;Acc:F7DCN7]
ENSCJAG00000034179	NOVEL	protein_coding	ENSCJAG00000034179	chromosome:C_jacchus3.2.1:3:1:190850796:1	101346560	101346712	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050515}  [Source:UniProtKB/TrEMBL;Acc:F7G215]
ENSCJAG00000023359	NOVEL	protein_coding	ENSCJAG00000023359	chromosome:C_jacchus3.2.1:17:1:74750902:1	37654168	37654596	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041855}  [Source:UniProtKB/TrEMBL;Acc:F7DCP4]
ENSCJAG00000022028	KNOWN_BY_PROJECTION	protein_coding	ATOH1	chromosome:C_jacchus3.2.1:3:1:190850796:1	100067610	100068788	R	atonal homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:797]
ENSCJAG00000023358	NOVEL	protein_coding	ENSCJAG00000023358	chromosome:C_jacchus3.2.1:17:1:74750902:1	35752532	35753275	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041854}  [Source:UniProtKB/TrEMBL;Acc:F7DCQ5]
ENSCJAG00000023357	NOVEL	protein_coding	ENSCJAG00000023357	chromosome:C_jacchus3.2.1:17:1:74750902:1	32100091	32100570	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041853}  [Source:UniProtKB/TrEMBL;Acc:F7DCQ9]
ENSCJAG00000013194	KNOWN_BY_PROJECTION	protein_coding	BAIAP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	1368843	1381957	D	BAI1-associated protein 3 [Source:HGNC Symbol;Acc:HGNC:948]
ENSCJAG00000011131	KNOWN	protein_coding	HMG20A	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1053082	1135954	R	High mobility group protein 20A {ECO:0000313|EMBL:JAB17969.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047384}  [Source:UniProtKB/TrEMBL;Acc:F7HUK8]
ENSCJAG00000022029	KNOWN_BY_PROJECTION	protein_coding	PDHA2	chromosome:C_jacchus3.2.1:3:1:190850796:1	98017525	98018931	R	pyruvate dehydrogenase (lipoamide) alpha 2 [Source:HGNC Symbol;Acc:HGNC:8807]
ENSCJAG00000009071	NOVEL	protein_coding	ENSCJAG00000009071	scaffold:C_jacchus3.2.1:ACFV01174273.1:1:39962:1	17813	18500	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016627}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ7]
ENSCJAG00000023066	NOVEL	protein_coding	ENSCJAG00000023066	chromosome:C_jacchus3.2.1:3:1:190850796:1	85802494	85802973	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041599}  [Source:UniProtKB/TrEMBL;Acc:F7F1F2]
ENSCJAG00000023356	NOVEL	protein_coding	ENSCJAG00000023356	chromosome:C_jacchus3.2.1:17:1:74750902:1	26926421	26927087	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041852}  [Source:UniProtKB/TrEMBL;Acc:F7DCR6]
ENSCJAG00000008433	NOVEL	protein_coding	ENSCJAG00000008433	scaffold:C_jacchus3.2.1:ACFV01180228.1:1:8616:1	3053	3934	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015516}  [Source:UniProtKB/TrEMBL;Acc:H9KWI5]
ENSCJAG00000023320	NOVEL	protein_coding	ENSCJAG00000023320	chromosome:C_jacchus3.2.1:3:1:190850796:1	85158619	85159086	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041826}  [Source:UniProtKB/TrEMBL;Acc:F7E8N0]
ENSCJAG00000018232	KNOWN_BY_PROJECTION	protein_coding	MRPL51	scaffold:C_jacchus3.2.1:GL285394.1:1:28548:1	24822	26002	R	mitochondrial ribosomal protein L51 [Source:HGNC Symbol;Acc:HGNC:14044]
ENSCJAG00000031264	NOVEL	protein_coding	ENSCJAG00000031264	chromosome:C_jacchus3.2.1:17:1:74750902:1	26498256	26499272	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052069}  [Source:UniProtKB/TrEMBL;Acc:F7IGX6]
ENSCJAG00000022861	NOVEL	protein_coding	ENSCJAG00000022861	chromosome:C_jacchus3.2.1:3:1:190850796:1	79226662	79227627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041432}  [Source:UniProtKB/TrEMBL;Acc:F7HFS1]
ENSCJAG00000022860	NOVEL	protein_coding	ENSCJAG00000022860	chromosome:C_jacchus3.2.1:3:1:190850796:1	78928846	78929430	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041431}  [Source:UniProtKB/TrEMBL;Acc:F7HFS3]
ENSCJAG00000022200	KNOWN_BY_PROJECTION	protein_coding	GPR171	chromosome:C_jacchus3.2.1:17:1:74750902:1	25978072	25979138	D	G protein-coupled receptor 171 [Source:HGNC Symbol;Acc:HGNC:30057]
ENSCJAG00000022198	NOVEL	protein_coding	ENSCJAG00000022198	chromosome:C_jacchus3.2.1:17:1:74750902:1	25613145	25614623	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040854}  [Source:UniProtKB/TrEMBL;Acc:F7IBL7]
ENSCJAG00000033387	NOVEL	protein_coding	ENSCJAG00000033387	scaffold:C_jacchus3.2.1:GL285129.1:1:25177:1	7148	16615	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042463}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ5]
ENSCJAG00000022859	KNOWN	protein_coding	TRAM1L1	chromosome:C_jacchus3.2.1:3:1:190850796:1	76524893	76526918	D	Translocating chain-associated membrane protein {ECO:0000256|PIRNR:PIRNR005449}  [Source:UniProtKB/TrEMBL;Acc:F7HFS7]
ENSCJAG00000022858	NOVEL	protein_coding	ENSCJAG00000022858	chromosome:C_jacchus3.2.1:3:1:190850796:1	71083698	71084282	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041429}  [Source:UniProtKB/TrEMBL;Acc:F7HFX5]
ENSCJAG00000013249	KNOWN_BY_PROJECTION	protein_coding	UBE2I	chromosome:C_jacchus3.2.1:12:1:121768101:1	1348229	1360313	D	ubiquitin-conjugating enzyme E2I [Source:HGNC Symbol;Acc:HGNC:12485]
ENSCJAG00000011159	KNOWN_BY_PROJECTION	protein_coding	LINGO1	chromosome:C_jacchus3.2.1:Y:1:2853901:1	822747	908415	D	leucine rich repeat and Ig domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21205]
ENSCJAG00000001050	KNOWN	protein_coding	P2RY1	chromosome:C_jacchus3.2.1:17:1:74750902:1	24455666	24458765	R	P2Y purinoceptor 1 {ECO:0000313|EMBL:JAB04335.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001797}  [Source:UniProtKB/TrEMBL;Acc:F6VY42]
ENSCJAG00000002372	KNOWN	protein_coding	TNFRSF13C	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	435051	436375	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004278}  [Source:UniProtKB/TrEMBL;Acc:H9KVT2]
ENSCJAG00000022197	KNOWN	protein_coding	RAP2B	chromosome:C_jacchus3.2.1:17:1:74750902:1	24144517	24145068	R	Ras-related protein Rap-2b {ECO:0000313|EMBL:JAB09256.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040853}  [Source:UniProtKB/TrEMBL;Acc:F7IBL9]
ENSCJAG00000036005	NOVEL	pseudogene	ENSCJAG00000036005	scaffold:C_jacchus3.2.1:ACFV01180228.1:1:8616:1	2205	3042	R	<no descrition>
ENSCJAG00000021817	KNOWN	protein_coding	SPRY1	chromosome:C_jacchus3.2.1:3:1:190850796:1	70608745	70609704	R	Protein sprouty homolog 1 {ECO:0000313|EMBL:JAB10931.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040518}  [Source:UniProtKB/TrEMBL;Acc:F7HQJ0]
ENSCJAG00000008431	NOVEL	protein_coding	ENSCJAG00000008431	scaffold:C_jacchus3.2.1:ACFV01180228.1:1:8616:1	1570	2040	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015514}  [Source:UniProtKB/TrEMBL;Acc:H9KWI4]
ENSCJAG00000011164	NOVEL	protein_coding	ENSCJAG00000011164	chromosome:C_jacchus3.2.1:Y:1:2853901:1	611783	617734	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020573}  [Source:UniProtKB/TrEMBL;Acc:F7GJP5]
ENSCJAG00000009484	NOVEL	protein_coding	ENSCJAG00000009484	scaffold:C_jacchus3.2.1:GL286131.1:1:39591:1	28833	30570	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017370}  [Source:UniProtKB/TrEMBL;Acc:H9KWL5]
ENSCJAG00000033744	NOVEL	protein_coding	ENSCJAG00000033744	chromosome:C_jacchus3.2.1:3:1:190850796:1	69574529	69576376	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005389}  [Source:UniProtKB/TrEMBL;Acc:F7IA77]
ENSCJAG00000006235	NOVEL	protein_coding	ENSCJAG00000006235	chromosome:C_jacchus3.2.1:12:1:121768101:1	1306863	1326562	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011517}  [Source:UniProtKB/TrEMBL;Acc:F7IDB0]
ENSCJAG00000004933	NOVEL	pseudogene	ENSCJAG00000004933	scaffold:C_jacchus3.2.1:GL286665.1:1:15733:1	8888	9550	D	<no descrition>
ENSCJAG00000033492	NOVEL	protein_coding	ENSCJAG00000033492	chromosome:C_jacchus3.2.1:12:1:121768101:1	1298543	1303712	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024402}  [Source:UniProtKB/TrEMBL;Acc:F7FNZ2]
ENSCJAG00000022196	NOVEL	protein_coding	ENSCJAG00000022196	chromosome:C_jacchus3.2.1:17:1:74750902:1	24001465	24002270	D	Actin-related protein 2/3 complex subunit 3 {ECO:0000256|PIRNR:PIRNR016315}  [Source:UniProtKB/TrEMBL;Acc:F7IBM1]
ENSCJAG00000011168	KNOWN	protein_coding	COMMD4	chromosome:C_jacchus3.2.1:Y:1:2853901:1	600696	602693	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020584}  [Source:UniProtKB/TrEMBL;Acc:F7G943]
ENSCJAG00000009655	NOVEL	protein_coding	ENSCJAG00000009655	scaffold:C_jacchus3.2.1:GL285849.1:1:83312:1	42192	44904	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017696}  [Source:UniProtKB/TrEMBL;Acc:H9KWL9]
ENSCJAG00000033485	NOVEL	protein_coding	ENSCJAG00000033485	chromosome:C_jacchus3.2.1:Y:1:2853901:1	578422	579592	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045585}  [Source:UniProtKB/TrEMBL;Acc:F6S826]
ENSCJAG00000034185	NOVEL	protein_coding	ENSCJAG00000034185	chromosome:C_jacchus3.2.1:3:1:190850796:1	68964930	68965076	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050649}  [Source:UniProtKB/TrEMBL;Acc:F7GSY7]
ENSCJAG00000032550	NOVEL	protein_coding	ENSCJAG00000032550	chromosome:C_jacchus3.2.1:3:1:190850796:1	67777931	67778239	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042771}  [Source:UniProtKB/TrEMBL;Acc:F6UHA4]
ENSCJAG00000034540	NOVEL	protein_coding	ENSCJAG00000034540	scaffold:C_jacchus3.2.1:GL285847.1:1:11901:1	4835	11805	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002109}  [Source:UniProtKB/TrEMBL;Acc:H9KVP0]
ENSCJAG00000022463	KNOWN	protein_coding	SPTSSB	chromosome:C_jacchus3.2.1:17:1:74750902:1	15939475	15941025	D	Serine palmitoyltransferase small subunit B {ECO:0000313|EMBL:JAB28756.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041076}  [Source:UniProtKB/TrEMBL;Acc:F7FGE6]
ENSCJAG00000033808	KNOWN	protein_coding	ENSCJAG00000033808	chromosome:C_jacchus3.2.1:Y:1:2853901:1	520700	537537	R	Callithrix jacchus RNA-binding motif protein, Y chromosome, family 1 member B-like (RBMY), mRNA. [Source:RefSeq mRNA;Acc:NM_001267757]
ENSCJAG00000003241	KNOWN	protein_coding	PABPC4L	chromosome:C_jacchus3.2.1:3:1:190850796:1	59043436	59048305	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005895}  [Source:UniProtKB/TrEMBL;Acc:F7IRA3]
ENSCJAG00000023318	NOVEL	protein_coding	ENSCJAG00000023318	scaffold:C_jacchus3.2.1:ACFV01178974.1:1:22035:1	19628	20569	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KXX3]
ENSCJAG00000017665	NOVEL	pseudogene	ENSCJAG00000017665	scaffold:C_jacchus3.2.1:GL286894.1:1:239419:1	214929	215900	R	<no descrition>
ENSCJAG00000021814	KNOWN	protein_coding	POLR2D	chromosome:C_jacchus3.2.1:3:1:190850796:1	41606604	41607100	R	DNA-directed RNA polymerase II subunit RPB4 {ECO:0000313|EMBL:JAB02001.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040515}  [Source:UniProtKB/TrEMBL;Acc:F7HQK1]
ENSCJAG00000035341	NOVEL	protein_coding	ENSCJAG00000035341	scaffold:C_jacchus3.2.1:GL286656.1:1:18155:1	10476	12869	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047272}  [Source:UniProtKB/TrEMBL;Acc:H9KY87]
ENSCJAG00000007042	KNOWN	protein_coding	C1S	chromosome:C_jacchus3.2.1:9:1:124281992:1	18936957	18948284	D	Complement C1s subcomponent {ECO:0000313|EMBL:JAB10152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013126}  [Source:UniProtKB/TrEMBL;Acc:F6VJE5]
ENSCJAG00000034293	NOVEL	protein_coding	ENSCJAG00000034293	chromosome:C_jacchus3.2.1:Y:1:2853901:1	417973	419179	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042480}  [Source:UniProtKB/TrEMBL;Acc:F6Z772]
ENSCJAG00000003583	NOVEL	protein_coding	ENSCJAG00000003583	scaffold:C_jacchus3.2.1:ACFV01179681.1:1:23040:1	17514	20393	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006490}  [Source:UniProtKB/TrEMBL;Acc:H9KW10]
ENSCJAG00000033324	NOVEL	protein_coding	ENSCJAG00000033324	scaffold:C_jacchus3.2.1:GL286088.1:1:58123:1	46520	47730	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050356}  [Source:UniProtKB/TrEMBL;Acc:H9KYG6]
ENSCJAG00000034354	NOVEL	protein_coding	ENSCJAG00000034354	chromosome:C_jacchus3.2.1:12:1:121768101:1	1283215	1285283	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024400}  [Source:UniProtKB/TrEMBL;Acc:F7FNZ7]
ENSCJAG00000011613	NOVEL	pseudogene	ENSCJAG00000011613	scaffold:C_jacchus3.2.1:GL285907.1:1:79621:1	58244	59880	R	<no descrition>
ENSCJAG00000013287	NOVEL	protein_coding	ENSCJAG00000013287	chromosome:C_jacchus3.2.1:12:1:121768101:1	1274099	1276710	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024394}  [Source:UniProtKB/TrEMBL;Acc:F7GMS6]
ENSCJAG00000013300	NOVEL	protein_coding	ENSCJAG00000013300	chromosome:C_jacchus3.2.1:12:1:121768101:1	1268380	1271380	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024436}  [Source:UniProtKB/TrEMBL;Acc:F7EWZ8]
ENSCJAG00000011586	NOVEL	protein_coding	ENSCJAG00000011586	scaffold:C_jacchus3.2.1:GL285907.1:1:79621:1	47942	56966	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021304}  [Source:UniProtKB/TrEMBL;Acc:H9KWU7]
ENSCJAG00000034791	KNOWN	protein_coding	TSPY	chromosome:C_jacchus3.2.1:Y:1:2853901:1	410879	413717	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045168}  [Source:UniProtKB/TrEMBL;Acc:F6RZE7]
ENSCJAG00000018824	KNOWN_BY_PROJECTION	protein_coding	NATD1	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	980294	982703	D	N-acetyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30770]
ENSCJAG00000013318	KNOWN_BY_PROJECTION	protein_coding	TPSG1	chromosome:C_jacchus3.2.1:12:1:121768101:1	1242841	1246303	R	tryptase gamma 1 [Source:HGNC Symbol;Acc:HGNC:14134]
ENSCJAG00000031668	KNOWN_BY_PROJECTION	protein_coding	HAP1	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	446621	451680	D	huntingtin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:4812]
ENSCJAG00000000650	NOVEL	protein_coding	ENSCJAG00000000650	scaffold:C_jacchus3.2.1:ACFV01180902.1:1:15038:1	2843	3952	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001108}  [Source:UniProtKB/TrEMBL;Acc:H9KVM1]
ENSCJAG00000008210	NOVEL	protein_coding	ENSCJAG00000008210	scaffold:C_jacchus3.2.1:ACFV01192591.1:1:4869:1	2414	2980	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015166}  [Source:UniProtKB/TrEMBL;Acc:H9KWH9]
ENSCJAG00000013056	KNOWN	protein_coding	GTPBP6	chromosome:C_jacchus3.2.1:Y:1:2853901:1	14554	21955	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023965}  [Source:UniProtKB/TrEMBL;Acc:F7F747]
ENSCJAG00000021813	NOVEL	protein_coding	ENSCJAG00000021813	chromosome:C_jacchus3.2.1:3:1:190850796:1	41006640	41006834	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040514}  [Source:UniProtKB/TrEMBL;Acc:F7HQK7]
ENSCJAG00000012135	KNOWN_BY_PROJECTION	protein_coding	GAST	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	453987	458244	R	gastrin [Source:HGNC Symbol;Acc:HGNC:4164]
ENSCJAG00000021917	KNOWN	protein_coding	EXOC8	chromosome:C_jacchus3.2.1:19:1:49578535:1	48644331	48646741	D	Exocyst complex component 8 {ECO:0000313|EMBL:JAB04468.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040601}  [Source:UniProtKB/TrEMBL;Acc:F7IGI7]
ENSCJAG00000000255	NOVEL	pseudogene	ENSCJAG00000000255	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	490168	490848	R	<no descrition>
ENSCJAG00000031501	NOVEL	protein_coding	ENSCJAG00000031501	scaffold:C_jacchus3.2.1:ACFV01197229.1:1:2540:1	543	1512	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045703}  [Source:UniProtKB/TrEMBL;Acc:H9KY51]
ENSCJAG00000021848	NOVEL	protein_coding	ENSCJAG00000021848	chromosome:C_jacchus3.2.1:3:1:190850796:1	38814445	38815981	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044148}  [Source:UniProtKB/TrEMBL;Acc:F7GAG7]
ENSCJAG00000019825	NOVEL	protein_coding	ENSCJAG00000019825	scaffold:C_jacchus3.2.1:ACFV01183289.1:1:8788:1	814	2847	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024989}  [Source:UniProtKB/TrEMBL;Acc:H9KX04]
ENSCJAG00000007079	KNOWN	protein_coding	LPCAT3	chromosome:C_jacchus3.2.1:9:1:124281992:1	18829445	18878016	R	Lysophospholipid acyltransferase 5 {ECO:0000313|EMBL:JAB04550.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013215}  [Source:UniProtKB/TrEMBL;Acc:F6Z104]
ENSCJAG00000022456	NOVEL	protein_coding	ENSCJAG00000022456	chromosome:C_jacchus3.2.1:19:1:49578535:1	47292926	47293441	D	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7FGG7]
ENSCJAG00000021809	NOVEL	protein_coding	ENSCJAG00000021809	chromosome:C_jacchus3.2.1:3:1:190850796:1	36895747	36897075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040510}  [Source:UniProtKB/TrEMBL;Acc:F7HQL9]
ENSCJAG00000017297	NOVEL	protein_coding	ENSCJAG00000017297	chromosome:C_jacchus3.2.1:19:1:49578535:1	39013661	39014143	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040438}  [Source:UniProtKB/TrEMBL;Acc:F7I9M3]
ENSCJAG00000021914	NOVEL	protein_coding	ENSCJAG00000021914	chromosome:C_jacchus3.2.1:19:1:49578535:1	38749746	38751065	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040598}  [Source:UniProtKB/TrEMBL;Acc:F7IL93]
ENSCJAG00000021913	NOVEL	protein_coding	ENSCJAG00000021913	chromosome:C_jacchus3.2.1:19:1:49578535:1	36857206	36857682	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040597}  [Source:UniProtKB/TrEMBL;Acc:F7IL94]
ENSCJAG00000022018	NOVEL	protein_coding	ENSCJAG00000022018	chromosome:C_jacchus3.2.1:19:1:49578535:1	35818291	35818575	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040688}  [Source:UniProtKB/TrEMBL;Acc:F7I4P2]
ENSCJAG00000023405	NOVEL	protein_coding	ENSCJAG00000023405	chromosome:C_jacchus3.2.1:3:1:190850796:1	26501841	26502629	D	40S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}  [Source:UniProtKB/TrEMBL;Acc:F7HF06]
ENSCJAG00000022631	KNOWN_BY_PROJECTION	protein_coding	OR13G1	chromosome:C_jacchus3.2.1:19:1:49578535:1	32618618	32619662	D	olfactory receptor, family 13, subfamily G, member 1 [Source:HGNC Symbol;Acc:HGNC:14999]
ENSCJAG00000022632	KNOWN_BY_PROJECTION	protein_coding	OR6F1	chromosome:C_jacchus3.2.1:19:1:49578535:1	32593468	32594528	D	olfactory receptor, family 6, subfamily F, member 1 [Source:HGNC Symbol;Acc:HGNC:15027]
ENSCJAG00000022633	NOVEL	protein_coding	ENSCJAG00000022633	chromosome:C_jacchus3.2.1:19:1:49578535:1	32566991	32567896	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAW2]
ENSCJAG00000022634	KNOWN	protein_coding	ENSCJAG00000022634	chromosome:C_jacchus3.2.1:19:1:49578535:1	32517200	32518138	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAW0]
ENSCJAG00000022635	NOVEL	protein_coding	ENSCJAG00000022635	chromosome:C_jacchus3.2.1:19:1:49578535:1	32472691	32473629	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAV8]
ENSCJAG00000036519	KNOWN_BY_PROJECTION	protein_coding	OR2T1	chromosome:C_jacchus3.2.1:19:1:49578535:1	32308982	32310091	R	olfactory receptor, family 2, subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:8277]
ENSCJAG00000033955	NOVEL	protein_coding	ENSCJAG00000033955	chromosome:C_jacchus3.2.1:19:1:49578535:1	32293528	32294505	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I327]
ENSCJAG00000019023	NOVEL	protein_coding	ENSCJAG00000019023	scaffold:C_jacchus3.2.1:GL286722.1:1:12493:1	784	1907	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035337}  [Source:UniProtKB/TrEMBL;Acc:H9KXH5]
ENSCJAG00000021881	NOVEL	protein_coding	ENSCJAG00000021881	chromosome:C_jacchus3.2.1:19:1:49578535:1	29075227	29075532	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040573}  [Source:UniProtKB/TrEMBL;Acc:F7INM2]
ENSCJAG00000021927	KNOWN	protein_coding	TMEM81	chromosome:C_jacchus3.2.1:19:1:49578535:1	27018308	27019075	R	Transmembrane protein 81 {ECO:0000313|EMBL:JAB10424.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040611}  [Source:UniProtKB/TrEMBL;Acc:F7IE59]
ENSCJAG00000010188	NOVEL	protein_coding	ENSCJAG00000010188	scaffold:C_jacchus3.2.1:GL286224.1:1:142856:1	33492	34537	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018742}  [Source:UniProtKB/TrEMBL;Acc:H9KWN1]
ENSCJAG00000022401	NOVEL	pseudogene	ENSCJAG00000022401	scaffold:C_jacchus3.2.1:ACFV01178277.1:1:23787:1	12980	14833	D	<no descrition>
ENSCJAG00000022549	NOVEL	processed_pseudogene	ENSCJAG00000022549	chromosome:C_jacchus3.2.1:2:1:204313951:1	98530386	98530865	R	<no descrition>
ENSCJAG00000033713	NOVEL	processed_pseudogene	ENSCJAG00000033713	chromosome:C_jacchus3.2.1:2:1:204313951:1	93610567	93610839	D	<no descrition>
ENSCJAG00000008372	NOVEL	protein_coding	ENSCJAG00000008372	scaffold:C_jacchus3.2.1:GL289768.1:1:9027:1	475	1345	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015409}  [Source:UniProtKB/TrEMBL;Acc:H9KWI2]
ENSCJAG00000022517	NOVEL	processed_pseudogene	ENSCJAG00000022517	chromosome:C_jacchus3.2.1:2:1:204313951:1	89996800	89997279	R	<no descrition>
ENSCJAG00000022300	NOVEL	processed_pseudogene	ENSCJAG00000022300	chromosome:C_jacchus3.2.1:2:1:204313951:1	68004369	68006075	R	<no descrition>
ENSCJAG00000022779	NOVEL	processed_pseudogene	ENSCJAG00000022779	chromosome:C_jacchus3.2.1:2:1:204313951:1	63064911	63065399	R	<no descrition>
ENSCJAG00000022952	NOVEL	processed_pseudogene	ENSCJAG00000022952	chromosome:C_jacchus3.2.1:2:1:204313951:1	56555280	56555504	D	<no descrition>
ENSCJAG00000022259	NOVEL	protein_coding	ENSCJAG00000022259	chromosome:C_jacchus3.2.1:14:1:108792865:1	511089	511407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040906}  [Source:UniProtKB/TrEMBL;Acc:F7I250]
ENSCJAG00000031962	NOVEL	protein_coding	ENSCJAG00000031962	scaffold:C_jacchus3.2.1:ACFV01191585.1:1:3825:1	923	1261	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045682}  [Source:UniProtKB/TrEMBL;Acc:H9KY50]
ENSCJAG00000034371	NOVEL	protein_coding	ENSCJAG00000034371	chromosome:C_jacchus3.2.1:2:1:204313951:1	197007204	197007688	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022737}  [Source:UniProtKB/TrEMBL;Acc:F7ID26]
ENSCJAG00000022725	KNOWN	protein_coding	MRPL36	chromosome:C_jacchus3.2.1:2:1:204313951:1	202791575	202792109	D	Ribosomal protein {ECO:0000256|RuleBase:RU000570}  [Source:UniProtKB/TrEMBL;Acc:F7FUZ2]
ENSCJAG00000022623	KNOWN_BY_PROJECTION	protein_coding	TAS2R1	chromosome:C_jacchus3.2.1:2:1:204313951:1	194452981	194454332	D	taste receptor, type 2, member 1 [Source:HGNC Symbol;Acc:HGNC:14909]
ENSCJAG00000022992	NOVEL	protein_coding	ENSCJAG00000022992	chromosome:C_jacchus3.2.1:2:1:204313951:1	190798634	190798813	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041547}  [Source:UniProtKB/TrEMBL;Acc:F7FTX2]
ENSCJAG00000021867	KNOWN_BY_PROJECTION	protein_coding	RXFP3	chromosome:C_jacchus3.2.1:2:1:204313951:1	169354576	169356426	R	relaxin/insulin-like family peptide receptor 3 [Source:HGNC Symbol;Acc:HGNC:24883]
ENSCJAG00000002657	KNOWN_BY_PROJECTION	protein_coding	C1QTNF8	chromosome:C_jacchus3.2.1:12:1:121768101:1	1108426	1507038	R	C1q and tumor necrosis factor related protein 8 [Source:HGNC Symbol;Acc:HGNC:31374]
ENSCJAG00000034493	NOVEL	protein_coding	ENSCJAG00000034493	chromosome:C_jacchus3.2.1:2:1:204313951:1	166016705	166017115	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F6SPW6]
ENSCJAG00000034785	NOVEL	protein_coding	ENSCJAG00000034785	chromosome:C_jacchus3.2.1:12:1:121768101:1	1106075	1107056	D	<no descrition>
ENSCJAG00000008266	NOVEL	protein_coding	ENSCJAG00000008266	chromosome:C_jacchus3.2.1:2:1:204313951:1	161065543	161066011	R	<no descrition>
ENSCJAG00000023400	NOVEL	protein_coding	ENSCJAG00000023400	chromosome:C_jacchus3.2.1:2:1:204313951:1	160145996	160146574	D	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7HF10]
ENSCJAG00000021805	KNOWN_BY_PROJECTION	protein_coding	PCNP	chromosome:C_jacchus3.2.1:2:1:204313951:1	157255121	157255648	R	PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:HGNC:30023]
ENSCJAG00000001440	NOVEL	protein_coding	ENSCJAG00000001440	chromosome:C_jacchus3.2.1:2:1:204313951:1	157185115	157186803	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048381}  [Source:UniProtKB/TrEMBL;Acc:F7G1X2]
ENSCJAG00000021806	KNOWN	protein_coding	HSPB3	chromosome:C_jacchus3.2.1:2:1:204313951:1	153259016	153259767	R	Heat shock protein beta-3 {ECO:0000313|EMBL:JAB13329.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040507}  [Source:UniProtKB/TrEMBL;Acc:F7HVA0]
ENSCJAG00000021807	NOVEL	protein_coding	ENSCJAG00000021807	chromosome:C_jacchus3.2.1:2:1:204313951:1	151357030	151357512	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040508}  [Source:UniProtKB/TrEMBL;Acc:F7HV99]
ENSCJAG00000023071	KNOWN_BY_PROJECTION	protein_coding	HTR1A	chromosome:C_jacchus3.2.1:2:1:204313951:1	143290807	143292406	D	5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled [Source:HGNC Symbol;Acc:HGNC:5286]
ENSCJAG00000023073	NOVEL	protein_coding	ENSCJAG00000023073	chromosome:C_jacchus3.2.1:2:1:204313951:1	140818053	140818694	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041606}  [Source:UniProtKB/TrEMBL;Acc:F7E9I6]
ENSCJAG00000023074	NOVEL	protein_coding	ENSCJAG00000023074	chromosome:C_jacchus3.2.1:2:1:204313951:1	134830257	134830759	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041607}  [Source:UniProtKB/TrEMBL;Acc:F7E9H5]
ENSCJAG00000022291	NOVEL	protein_coding	ENSCJAG00000022291	chromosome:C_jacchus3.2.1:2:1:204313951:1	127749001	127749273	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040938}  [Source:UniProtKB/TrEMBL;Acc:F7HXF3]
ENSCJAG00000022290	NOVEL	protein_coding	ENSCJAG00000022290	chromosome:C_jacchus3.2.1:2:1:204313951:1	127493461	127493862	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040937}  [Source:UniProtKB/TrEMBL;Acc:F7HXF5]
ENSCJAG00000002692	NOVEL	protein_coding	ENSCJAG00000002692	chromosome:C_jacchus3.2.1:12:1:121768101:1	1006263	1108896	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004886}  [Source:UniProtKB/TrEMBL;Acc:F6WQN0]
ENSCJAG00000002659	KNOWN_BY_PROJECTION	protein_coding	SSTR5	chromosome:C_jacchus3.2.1:12:1:121768101:1	959173	1100264	D	somatostatin receptor 5 [Source:HGNC Symbol;Acc:HGNC:11334]
ENSCJAG00000022513	KNOWN	protein_coding	MYCBP	chromosome:C_jacchus3.2.1:2:1:204313951:1	100020568	100021084	R	C-Myc-binding protein {ECO:0000313|EMBL:JAB08462.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041120}  [Source:UniProtKB/TrEMBL;Acc:F7DXG1]
ENSCJAG00000012302	KNOWN_BY_PROJECTION	protein_coding	LMF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	869131	993934	R	lipase maturation factor 1 [Source:HGNC Symbol;Acc:HGNC:14154]
ENSCJAG00000022516	KNOWN_BY_PROJECTION	protein_coding	RPS19	chromosome:C_jacchus3.2.1:2:1:204313951:1	93406917	93407412	D	ribosomal protein S19 [Source:HGNC Symbol;Acc:HGNC:10402]
ENSCJAG00000016786	NOVEL	protein_coding	ENSCJAG00000016786	chromosome:C_jacchus3.2.1:2:1:204313951:1	90903759	90904883	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030871}  [Source:UniProtKB/TrEMBL;Acc:F7A4H2]
ENSCJAG00000018449	KNOWN_BY_PROJECTION	protein_coding	DIP2C	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	848682	860679	R	DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
ENSCJAG00000008662	KNOWN	protein_coding	RFWD2	chromosome:C_jacchus3.2.1:18:1:47448759:1	30809671	31073559	D	E3 ubiquitin-protein ligase RFWD2 isoform a {ECO:0000313|EMBL:JAB07787.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016175}  [Source:UniProtKB/TrEMBL;Acc:F7A7I1]
ENSCJAG00000018092	NOVEL	protein_coding	ENSCJAG00000018092	scaffold:C_jacchus3.2.1:GL285145.1:1:19544:1	10066	11618	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033424}  [Source:UniProtKB/TrEMBL;Acc:H9KXC7]
ENSCJAG00000021543	NOVEL	protein_coding	ENSCJAG00000021543	scaffold:C_jacchus3.2.1:GL286270.1:1:51878:1	46992	47695	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040113}  [Source:UniProtKB/TrEMBL;Acc:H9KXN6]
ENSCJAG00000018944	KNOWN_BY_PROJECTION	protein_coding	SHCBP1	scaffold:C_jacchus3.2.1:GL286233.1:1:113143:1	2656	24919	D	SHC SH2-domain binding protein 1 [Source:HGNC Symbol;Acc:HGNC:29547]
ENSCJAG00000012253	KNOWN	protein_coding	RPUSD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	805111	807252	R	RNA pseudouridylate synthase domain-containing protein 1 {ECO:0000313|EMBL:JAB04878.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022462}  [Source:UniProtKB/TrEMBL;Acc:F7ISB8]
ENSCJAG00000019545	KNOWN	protein_coding	CYP2U1	scaffold:C_jacchus3.2.1:ACFV01175663.1:1:48256:1	10200	32575	D	Cytochrome P450 2U1 {ECO:0000313|EMBL:JAB14720.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036312}  [Source:UniProtKB/TrEMBL;Acc:H9KXI8]
ENSCJAG00000012883	NOVEL	protein_coding	ENSCJAG00000012883	chromosome:C_jacchus3.2.1:2:1:204313951:1	69595249	69595560	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044604}  [Source:UniProtKB/TrEMBL;Acc:F7ECR1]
ENSCJAG00000035228	NOVEL	protein_coding	ENSCJAG00000035228	chromosome:C_jacchus3.2.1:2:1:204313951:1	69314663	69315100	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050142}  [Source:UniProtKB/TrEMBL;Acc:F7H4D3]
ENSCJAG00000022277	NOVEL	protein_coding	ENSCJAG00000022277	chromosome:C_jacchus3.2.1:2:1:204313951:1	65128869	65129918	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040924}  [Source:UniProtKB/TrEMBL;Acc:F7HZR8]
ENSCJAG00000021710	KNOWN	protein_coding	ADRB2	chromosome:C_jacchus3.2.1:2:1:204313951:1	46234613	46237924	D	Beta-2 adrenergic receptor {ECO:0000313|EMBL:JAB14392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040422}  [Source:UniProtKB/TrEMBL;Acc:F7IE74]
ENSCJAG00000023313	NOVEL	processed_pseudogene	ENSCJAG00000023313	chromosome:C_jacchus3.2.1:X:1:142054208:1	16383929	16384135	D	<no descrition>
ENSCJAG00000023349	NOVEL	processed_pseudogene	ENSCJAG00000023349	chromosome:C_jacchus3.2.1:X:1:142054208:1	14307131	14307610	R	<no descrition>
ENSCJAG00000033987	NOVEL	processed_pseudogene	ENSCJAG00000033987	chromosome:C_jacchus3.2.1:X:1:142054208:1	9640042	9640389	R	<no descrition>
ENSCJAG00000022253	NOVEL	processed_pseudogene	ENSCJAG00000022253	chromosome:C_jacchus3.2.1:X:1:142054208:1	3322068	3322655	D	<no descrition>
ENSCJAG00000021854	NOVEL	processed_pseudogene	ENSCJAG00000021854	chromosome:C_jacchus3.2.1:3:1:190850796:1	190649462	190649941	D	<no descrition>
ENSCJAG00000022795	NOVEL	processed_pseudogene	ENSCJAG00000022795	chromosome:C_jacchus3.2.1:3:1:190850796:1	174407939	174408533	R	<no descrition>
ENSCJAG00000002116	NOVEL	protein_coding	ENSCJAG00000002116	scaffold:C_jacchus3.2.1:ACFV01183454.1:1:14639:1	4694	9263	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052125}  [Source:UniProtKB/TrEMBL;Acc:H9KYL4]
ENSCJAG00000035652	NOVEL	protein_coding	ENSCJAG00000035652	chromosome:C_jacchus3.2.1:X:1:142054208:1	45675218	45675762	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052259}  [Source:UniProtKB/TrEMBL;Acc:F7IJ45]
ENSCJAG00000022336	NOVEL	protein_coding	ENSCJAG00000022336	chromosome:C_jacchus3.2.1:X:1:142054208:1	36703965	36704339	D	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7HPP9]
ENSCJAG00000022335	NOVEL	protein_coding	ENSCJAG00000022335	chromosome:C_jacchus3.2.1:X:1:142054208:1	36146362	36146913	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7HPQ4]
ENSCJAG00000032005	NOVEL	protein_coding	ENSCJAG00000032005	chromosome:C_jacchus3.2.1:X:1:142054208:1	35683730	35684104	D	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7HDJ1]
ENSCJAG00000019704	NOVEL	protein_coding	ENSCJAG00000019704	chromosome:C_jacchus3.2.1:X:1:142054208:1	34847521	34848165	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036593}  [Source:UniProtKB/TrEMBL;Acc:F7EW71]
ENSCJAG00000033708	NOVEL	protein_coding	ENSCJAG00000033708	chromosome:C_jacchus3.2.1:X:1:142054208:1	34622224	34623057	D	E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}  [Source:UniProtKB/TrEMBL;Acc:F7I459]
ENSCJAG00000034916	NOVEL	protein_coding	ENSCJAG00000034916	chromosome:C_jacchus3.2.1:X:1:142054208:1	34267625	34268224	D	<no descrition>
ENSCJAG00000012174	KNOWN_BY_PROJECTION	protein_coding	HAGHL	chromosome:C_jacchus3.2.1:12:1:121768101:1	748629	750991	D	hydroxyacylglutathione hydrolase-like [Source:HGNC Symbol;Acc:HGNC:14177]
ENSCJAG00000007861	NOVEL	protein_coding	ENSCJAG00000007861	chromosome:C_jacchus3.2.1:X:1:142054208:1	33100814	33103312	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014568}  [Source:UniProtKB/TrEMBL;Acc:F7IGA5]
ENSCJAG00000022151	NOVEL	protein_coding	ENSCJAG00000022151	chromosome:C_jacchus3.2.1:X:1:142054208:1	33481723	33482076	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040810}  [Source:UniProtKB/TrEMBL;Acc:F7IIR1]
ENSCJAG00000031789	NOVEL	protein_coding	ENSCJAG00000031789	chromosome:C_jacchus3.2.1:X:1:142054208:1	31977232	31977598	R	<no descrition>
ENSCJAG00000012165	KNOWN_BY_PROJECTION	protein_coding	CCDC78	chromosome:C_jacchus3.2.1:12:1:121768101:1	744109	747516	R	coiled-coil domain containing 78 [Source:HGNC Symbol;Acc:HGNC:14153]
ENSCJAG00000022150	KNOWN_BY_PROJECTION	protein_coding	FTHL17	chromosome:C_jacchus3.2.1:X:1:142054208:1	29758089	29758637	R	ferritin, heavy polypeptide-like 17 [Source:HGNC Symbol;Acc:HGNC:3987]
ENSCJAG00000033460	NOVEL	protein_coding	ENSCJAG00000033460	chromosome:C_jacchus3.2.1:X:1:142054208:1	26738378	26740156	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044107}  [Source:UniProtKB/TrEMBL;Acc:F7GL51]
ENSCJAG00000033266	NOVEL	protein_coding	ENSCJAG00000033266	chromosome:C_jacchus3.2.1:X:1:142054208:1	26672880	26673233	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048810}  [Source:UniProtKB/TrEMBL;Acc:F6TK81]
ENSCJAG00000022318	NOVEL	protein_coding	ENSCJAG00000022318	chromosome:C_jacchus3.2.1:X:1:142054208:1	21579429	21579845	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040958}  [Source:UniProtKB/TrEMBL;Acc:F7HUY9]
ENSCJAG00000022320	NOVEL	protein_coding	ENSCJAG00000022320	chromosome:C_jacchus3.2.1:X:1:142054208:1	17917366	17918082	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040960}  [Source:UniProtKB/TrEMBL;Acc:F7HPY0]
ENSCJAG00000022319	NOVEL	protein_coding	ENSCJAG00000022319	chromosome:C_jacchus3.2.1:X:1:142054208:1	18154847	18155410	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040959}  [Source:UniProtKB/TrEMBL;Acc:F7HUY6]
ENSCJAG00000022321	NOVEL	protein_coding	ENSCJAG00000022321	chromosome:C_jacchus3.2.1:X:1:142054208:1	17198901	17199444	D	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F7HPX6]
ENSCJAG00000022322	NOVEL	protein_coding	ENSCJAG00000022322	chromosome:C_jacchus3.2.1:X:1:142054208:1	16564080	16564700	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040962}  [Source:UniProtKB/TrEMBL;Acc:F7HPX4]
ENSCJAG00000023330	NOVEL	protein_coding	ENSCJAG00000023330	chromosome:C_jacchus3.2.1:X:1:142054208:1	15084206	15084553	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041836}  [Source:UniProtKB/TrEMBL;Acc:F7DU23]
ENSCJAG00000023329	KNOWN_BY_PROJECTION	protein_coding	ATXN3L	chromosome:C_jacchus3.2.1:X:1:142054208:1	11295476	11297217	R	ataxin 3-like [Source:HGNC Symbol;Acc:HGNC:24173]
ENSCJAG00000007307	KNOWN	protein_coding	ENO2	chromosome:C_jacchus3.2.1:9:1:124281992:1	18766321	18775091	D	Gamma-enolase {ECO:0000313|EMBL:JAB08324.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000619}  [Source:UniProtKB/TrEMBL;Acc:F6QLJ3]
ENSCJAG00000008617	KNOWN_BY_PROJECTION	protein_coding	PAPPA2	chromosome:C_jacchus3.2.1:18:1:47448759:1	30201210	30494688	R	pappalysin 2 [Source:HGNC Symbol;Acc:HGNC:14615]
ENSCJAG00000012154	KNOWN	protein_coding	FAM173A	chromosome:C_jacchus3.2.1:12:1:121768101:1	736198	743949	D	Protein FAM173A isoform 1 {ECO:0000313|EMBL:JAB33104.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022298}  [Source:UniProtKB/TrEMBL;Acc:F7BBM2]
ENSCJAG00000012128	KNOWN	protein_coding	FBXL16	chromosome:C_jacchus3.2.1:12:1:121768101:1	712201	727755	R	F-box/LRR-repeat protein 16 {ECO:0000313|EMBL:JAB31522.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022273}  [Source:UniProtKB/TrEMBL;Acc:F7BU26]
ENSCJAG00000007339	KNOWN_BY_PROJECTION	protein_coding	LRRC23	chromosome:C_jacchus3.2.1:9:1:124281992:1	18755636	18766125	D	leucine rich repeat containing 23 [Source:HGNC Symbol;Acc:HGNC:19138]
ENSCJAG00000023367	NOVEL	protein_coding	ENSCJAG00000023367	chromosome:C_jacchus3.2.1:X:1:142054208:1	7882293	7882922	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041863}  [Source:UniProtKB/TrEMBL;Acc:F7CUB9]
ENSCJAG00000023105	KNOWN_BY_PROJECTION	protein_coding	P2RY8	chromosome:C_jacchus3.2.1:X:1:142054208:1	376369	377454	R	purinergic receptor P2Y, G-protein coupled, 8 [Source:HGNC Symbol;Acc:HGNC:15524]
ENSCJAG00000022064	NOVEL	protein_coding	ENSCJAG00000022064	chromosome:C_jacchus3.2.1:3:1:190850796:1	188673503	188673751	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040728}  [Source:UniProtKB/TrEMBL;Acc:F7HV77]
ENSCJAG00000007343	KNOWN	protein_coding	SPSB2	chromosome:C_jacchus3.2.1:9:1:124281992:1	18728835	18731232	R	SPRY domain-containing SOCS box protein 2 {ECO:0000313|EMBL:JAB07036.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013673}  [Source:UniProtKB/TrEMBL;Acc:F7AY68]
ENSCJAG00000022063	NOVEL	protein_coding	ENSCJAG00000022063	chromosome:C_jacchus3.2.1:3:1:190850796:1	187664684	187665179	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040727}  [Source:UniProtKB/TrEMBL;Acc:F7HV79]
ENSCJAG00000021730	KNOWN_BY_PROJECTION	protein_coding	H3F3C	chromosome:C_jacchus3.2.1:3:1:190850796:1	186467826	186468236	R	H3 histone, family 3C [Source:HGNC Symbol;Acc:HGNC:33164]
ENSCJAG00000022012	KNOWN	protein_coding	BLOC1S4	chromosome:C_jacchus3.2.1:3:1:190850796:1	184636232	184637680	D	Protein cappuccino homolog {ECO:0000313|EMBL:JAB03956.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040682}  [Source:UniProtKB/TrEMBL;Acc:F7I4Q2]
ENSCJAG00000022014	NOVEL	protein_coding	ENSCJAG00000022014	chromosome:C_jacchus3.2.1:3:1:190850796:1	184592431	184592926	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040684}  [Source:UniProtKB/TrEMBL;Acc:F7I4P8]
ENSCJAG00000000106	KNOWN_BY_PROJECTION	protein_coding	DRD5	chromosome:C_jacchus3.2.1:3:1:190850796:1	181903884	181906214	R	dopamine receptor D5 [Source:HGNC Symbol;Acc:HGNC:3026]
ENSCJAG00000012087	KNOWN_BY_PROJECTION	protein_coding	WDR24	chromosome:C_jacchus3.2.1:12:1:121768101:1	706233	710997	R	WD repeat domain 24 [Source:HGNC Symbol;Acc:HGNC:20852]
ENSCJAG00000022790	KNOWN	protein_coding	ZNF518B	chromosome:C_jacchus3.2.1:3:1:190850796:1	181033836	181037045	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041373}; Zinc finger protein 518B {ECO:0000313|EMBL:JAB09437.1}  [Source:UniProtKB/TrEMBL;Acc:F7ENK2]
ENSCJAG00000022791	KNOWN	protein_coding	ENSCJAG00000022791	chromosome:C_jacchus3.2.1:3:1:190850796:1	180651995	180652832	D	Callithrix jacchus anaphase promoting complex subunit 15 (ANAPC15), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001199361]
ENSCJAG00000022792	KNOWN_BY_PROJECTION	protein_coding	RPS15A	chromosome:C_jacchus3.2.1:3:1:190850796:1	176856585	176857030	D	ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
ENSCJAG00000012079	KNOWN_BY_PROJECTION	protein_coding	JMJD8	chromosome:C_jacchus3.2.1:12:1:121768101:1	704111	705226	R	jumonji domain containing 8 [Source:HGNC Symbol;Acc:HGNC:14148]
ENSCJAG00000013121	KNOWN_BY_PROJECTION	protein_coding	SOD3	chromosome:C_jacchus3.2.1:3:1:190850796:1	166343826	166344527	R	superoxide dismutase 3, extracellular [Source:HGNC Symbol;Acc:HGNC:11181]
ENSCJAG00000008368	NOVEL	protein_coding	ENSCJAG00000008368	scaffold:C_jacchus3.2.1:GL288919.1:1:13263:1	447	1933	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015410}  [Source:UniProtKB/TrEMBL;Acc:H9KWI3]
ENSCJAG00000021714	KNOWN	protein_coding	ENSCJAG00000021714	chromosome:C_jacchus3.2.1:3:1:190850796:1	153024040	153024450	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7G6P0]
ENSCJAG00000022450	NOVEL	processed_pseudogene	ENSCJAG00000022450	chromosome:C_jacchus3.2.1:6:1:158406734:1	132237520	132237999	D	<no descrition>
ENSCJAG00000022904	NOVEL	processed_pseudogene	ENSCJAG00000022904	chromosome:C_jacchus3.2.1:6:1:158406734:1	122904147	122904620	D	<no descrition>
ENSCJAG00000022903	NOVEL	processed_pseudogene	ENSCJAG00000022903	chromosome:C_jacchus3.2.1:6:1:158406734:1	113160153	113160704	R	<no descrition>
ENSCJAG00000022852	NOVEL	processed_pseudogene	ENSCJAG00000022852	chromosome:C_jacchus3.2.1:6:1:158406734:1	84937753	84938482	D	<no descrition>
ENSCJAG00000022853	NOVEL	processed_pseudogene	ENSCJAG00000022853	chromosome:C_jacchus3.2.1:6:1:158406734:1	83941348	83941857	R	<no descrition>
ENSCJAG00000022854	NOVEL	processed_pseudogene	ENSCJAG00000022854	chromosome:C_jacchus3.2.1:6:1:158406734:1	81342958	81343932	D	<no descrition>
ENSCJAG00000032909	NOVEL	processed_pseudogene	ENSCJAG00000032909	chromosome:C_jacchus3.2.1:6:1:158406734:1	57307022	57307357	R	<no descrition>
ENSCJAG00000023153	NOVEL	processed_pseudogene	ENSCJAG00000023153	chromosome:C_jacchus3.2.1:6:1:158406734:1	40785266	40785442	R	<no descrition>
ENSCJAG00000032940	NOVEL	processed_pseudogene	ENSCJAG00000032940	chromosome:C_jacchus3.2.1:6:1:158406734:1	28373506	28373895	R	<no descrition>
ENSCJAG00000022425	NOVEL	protein_coding	ENSCJAG00000022425	chromosome:C_jacchus3.2.1:6:1:158406734:1	133200053	133200214	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041047}  [Source:UniProtKB/TrEMBL;Acc:F7FGP6]
ENSCJAG00000012062	KNOWN	protein_coding	STUB1	chromosome:C_jacchus3.2.1:12:1:121768101:1	701432	704081	D	E3 ubiquitin-protein ligase CHIP {ECO:0000313|EMBL:JAB40492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022163}  [Source:UniProtKB/TrEMBL;Acc:F6X127]
ENSCJAG00000032792	NOVEL	protein_coding	ENSCJAG00000032792	chromosome:C_jacchus3.2.1:6:1:158406734:1	131183668	131184729	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042210}  [Source:UniProtKB/TrEMBL;Acc:F7BAF1]
ENSCJAG00000022424	NOVEL	protein_coding	ENSCJAG00000022424	chromosome:C_jacchus3.2.1:6:1:158406734:1	130941607	130942830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041046}  [Source:UniProtKB/TrEMBL;Acc:F7FGP8]
ENSCJAG00000022423	NOVEL	protein_coding	ENSCJAG00000022423	chromosome:C_jacchus3.2.1:6:1:158406734:1	130117887	130118027	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041045}  [Source:UniProtKB/TrEMBL;Acc:F7FGQ3]
ENSCJAG00000022890	NOVEL	protein_coding	ENSCJAG00000022890	chromosome:C_jacchus3.2.1:6:1:158406734:1	123594853	123595494	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041461}  [Source:UniProtKB/TrEMBL;Acc:F7H5B8]
ENSCJAG00000022422	NOVEL	protein_coding	ENSCJAG00000022422	chromosome:C_jacchus3.2.1:6:1:158406734:1	128266134	128266283	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041044}  [Source:UniProtKB/TrEMBL;Acc:F7FGQ8]
ENSCJAG00000005674	NOVEL	protein_coding	ENSCJAG00000005674	chromosome:C_jacchus3.2.1:6:1:158406734:1	121729257	121730947	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052402}  [Source:UniProtKB/TrEMBL;Acc:F7IBY3]
ENSCJAG00000012045	KNOWN_BY_PROJECTION	protein_coding	RHBDL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	696277	698810	D	rhomboid, veinlet-like 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:10007]
ENSCJAG00000022887	NOVEL	protein_coding	ENSCJAG00000022887	chromosome:C_jacchus3.2.1:6:1:158406734:1	120357751	120357870	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041458}  [Source:UniProtKB/TrEMBL;Acc:F7H5G3]
ENSCJAG00000004918	KNOWN	protein_coding	FZD7	chromosome:C_jacchus3.2.1:6:1:158406734:1	117629544	117633397	D	Frizzled-7 {ECO:0000313|EMBL:JAB09518.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008985}  [Source:UniProtKB/TrEMBL;Acc:F7I3D1]
ENSCJAG00000022884	NOVEL	protein_coding	ENSCJAG00000022884	chromosome:C_jacchus3.2.1:6:1:158406734:1	111673993	111674635	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041455}  [Source:UniProtKB/TrEMBL;Acc:F7HAE2]
ENSCJAG00000004425	NOVEL	protein_coding	ENSCJAG00000004425	scaffold:C_jacchus3.2.1:GL285880.1:1:16703:1	13632	15401	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008014}  [Source:UniProtKB/TrEMBL;Acc:H9KW43]
ENSCJAG00000022883	NOVEL	protein_coding	ENSCJAG00000022883	chromosome:C_jacchus3.2.1:6:1:158406734:1	108234921	108235418	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041454}  [Source:UniProtKB/TrEMBL;Acc:F7HAE7]
ENSCJAG00000022915	NOVEL	protein_coding	ENSCJAG00000022915	chromosome:C_jacchus3.2.1:6:1:158406734:1	101998023	101998274	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041476}  [Source:UniProtKB/TrEMBL;Acc:F7H557]
ENSCJAG00000023039	NOVEL	protein_coding	ENSCJAG00000023039	chromosome:C_jacchus3.2.1:6:1:158406734:1	95771583	95772262	D	Ribosomal protein {ECO:0000256|RuleBase:RU000659}  [Source:UniProtKB/TrEMBL;Acc:F7F1S3]
ENSCJAG00000012012	KNOWN_BY_PROJECTION	protein_coding	RHOT2	chromosome:C_jacchus3.2.1:12:1:121768101:1	688791	694646	D	ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]
ENSCJAG00000007348	KNOWN	protein_coding	TPI1	chromosome:C_jacchus3.2.1:9:1:124281992:1	18724947	18728995	D	Triosephosphate isomerase {ECO:0000256|RuleBase:RU000517}  [Source:UniProtKB/TrEMBL;Acc:F7BWS5]
ENSCJAG00000035120	NOVEL	protein_coding	ENSCJAG00000035120	scaffold:C_jacchus3.2.1:ACFV01187705.1:1:7039:1	3868	4893	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045084}  [Source:UniProtKB/TrEMBL;Acc:H9KY38]
ENSCJAG00000012003	KNOWN_BY_PROJECTION	protein_coding	WDR90	chromosome:C_jacchus3.2.1:12:1:121768101:1	666701	688382	D	WD repeat domain 90 [Source:HGNC Symbol;Acc:HGNC:26960]
ENSCJAG00000011979	KNOWN	protein_coding	FAM195A	chromosome:C_jacchus3.2.1:12:1:121768101:1	659702	665558	D	Protein FAM195A {ECO:0000313|EMBL:JAB02686.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022036}  [Source:UniProtKB/TrEMBL;Acc:F7BDC6]
ENSCJAG00000011974	KNOWN_BY_PROJECTION	protein_coding	C16orf13	chromosome:C_jacchus3.2.1:12:1:121768101:1	643959	645764	R	chromosome 16 open reading frame 13 [Source:HGNC Symbol;Acc:HGNC:14141]
ENSCJAG00000011961	KNOWN_BY_PROJECTION	protein_coding	WFIKKN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	641185	643605	D	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30912]
ENSCJAG00000011948	KNOWN_BY_PROJECTION	protein_coding	PIGQ	chromosome:C_jacchus3.2.1:12:1:121768101:1	589219	598184	D	phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
ENSCJAG00000035414	NOVEL	protein_coding	ENSCJAG00000035414	scaffold:C_jacchus3.2.1:ACFV01186385.1:1:13531:1	5150	11805	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006499}  [Source:UniProtKB/TrEMBL;Acc:H9KW11]
ENSCJAG00000034871	KNOWN_BY_PROJECTION	protein_coding	NHLRC4	chromosome:C_jacchus3.2.1:12:1:121768101:1	581273	660603	D	NHL repeat containing 4 [Source:HGNC Symbol;Acc:HGNC:26700]
ENSCJAG00000007431	KNOWN_BY_PROJECTION	protein_coding	USP5	chromosome:C_jacchus3.2.1:9:1:124281992:1	18709650	18724356	D	ubiquitin specific peptidase 5 (isopeptidase T) [Source:HGNC Symbol;Acc:HGNC:12628]
ENSCJAG00000036629	KNOWN	protein_coding	RAB40C	chromosome:C_jacchus3.2.1:12:1:121768101:1	574734	637665	D	Ras-related protein Rab-40C isoform a {ECO:0000313|EMBL:JAB08220.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021907}  [Source:UniProtKB/TrEMBL;Acc:L7N0W4]
ENSCJAG00000011940	KNOWN_BY_PROJECTION	protein_coding	PRR35	chromosome:C_jacchus3.2.1:12:1:121768101:1	574584	579312	D	proline rich 35 [Source:HGNC Symbol;Acc:HGNC:14139]
ENSCJAG00000011919	KNOWN_BY_PROJECTION	protein_coding	CAPN15	chromosome:C_jacchus3.2.1:12:1:121768101:1	559413	565102	D	calpain 15 [Source:HGNC Symbol;Acc:HGNC:11182]
ENSCJAG00000007508	KNOWN	protein_coding	CDCA3	chromosome:C_jacchus3.2.1:9:1:124281992:1	18706114	18708841	R	Cell division cycle-associated protein 3 {ECO:0000313|EMBL:JAB34099.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013951}  [Source:UniProtKB/TrEMBL;Acc:F6WG31]
ENSCJAG00000011897	KNOWN_BY_PROJECTION	protein_coding	RAB11FIP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	466530	532611	D	RAB11 family interacting protein 3 (class II) [Source:HGNC Symbol;Acc:HGNC:17224]
ENSCJAG00000007512	KNOWN	protein_coding	GNB3	chromosome:C_jacchus3.2.1:9:1:124281992:1	18695332	18704718	D	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 {ECO:0000313|EMBL:JAB04420.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013981}  [Source:UniProtKB/TrEMBL;Acc:F6VBL9]
ENSCJAG00000011883	KNOWN_BY_PROJECTION	protein_coding	DECR2	chromosome:C_jacchus3.2.1:12:1:121768101:1	405392	420239	D	2,4-dienoyl CoA reductase 2, peroxisomal [Source:HGNC Symbol;Acc:HGNC:2754]
ENSCJAG00000020757	NOVEL	pseudogene	ENSCJAG00000020757	scaffold:C_jacchus3.2.1:GL285413.1:1:19836:1	9226	9996	R	<no descrition>
ENSCJAG00000007528	KNOWN	protein_coding	LEPREL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	18680522	18693226	D	Callithrix jacchus leprecan-like 2 (LEPREL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001270908]
ENSCJAG00000011857	KNOWN	protein_coding	TMEM8	chromosome:C_jacchus3.2.1:12:1:121768101:1	380711	386190	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021794}  [Source:UniProtKB/TrEMBL;Acc:F6SSA3]
ENSCJAG00000032347	KNOWN_BY_PROJECTION	protein_coding	GPR162	chromosome:C_jacchus3.2.1:9:1:124281992:1	18674954	18678675	D	G protein-coupled receptor 162 [Source:HGNC Symbol;Acc:HGNC:16693]
ENSCJAG00000004390	NOVEL	protein_coding	ENSCJAG00000004390	scaffold:C_jacchus3.2.1:ACFV01199486.1:1:2717:1	2238	2684	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007953}  [Source:UniProtKB/TrEMBL;Acc:H9KW41]
ENSCJAG00000011847	KNOWN	protein_coding	MRPL28	chromosome:C_jacchus3.2.1:12:1:121768101:1	294003	379047	R	39S ribosomal protein L28, mitochondrial {ECO:0000313|EMBL:JAB02217.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021760}  [Source:UniProtKB/TrEMBL;Acc:F6TE31]
ENSCJAG00000007635	KNOWN	protein_coding	CD4	chromosome:C_jacchus3.2.1:9:1:124281992:1	18635310	18813272	D	T-cell surface glycoprotein CD4 precursor  [Source:RefSeq peptide;Acc:NP_001254701]
ENSCJAG00000007657	KNOWN_BY_PROJECTION	protein_coding	LAG3	chromosome:C_jacchus3.2.1:9:1:124281992:1	18617895	18623771	D	lymphocyte-activation gene 3 [Source:HGNC Symbol;Acc:HGNC:6476]
ENSCJAG00000011809	KNOWN_BY_PROJECTION	protein_coding	AXIN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	290977	352728	R	axin 1 [Source:HGNC Symbol;Acc:HGNC:903]
ENSCJAG00000007681	KNOWN_BY_PROJECTION	protein_coding	MLF2	chromosome:C_jacchus3.2.1:9:1:124281992:1	18590093	18596050	R	myeloid leukemia factor 2 [Source:HGNC Symbol;Acc:HGNC:7126]
ENSCJAG00000007790	KNOWN_BY_PROJECTION	protein_coding	DYRK4	chromosome:C_jacchus3.2.1:9:1:124281992:1	18563072	18583122	R	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 [Source:HGNC Symbol;Acc:HGNC:3095]
ENSCJAG00000007828	NOVEL	pseudogene	ENSCJAG00000007828	chromosome:C_jacchus3.2.1:9:1:124281992:1	18517959	18518758	R	<no descrition>
ENSCJAG00000007832	NOVEL	pseudogene	ENSCJAG00000007832	chromosome:C_jacchus3.2.1:9:1:124281992:1	18513913	18514331	D	<no descrition>
ENSCJAG00000011786	KNOWN_BY_PROJECTION	protein_coding	PDIA2	chromosome:C_jacchus3.2.1:12:1:121768101:1	286080	373107	D	protein disulfide isomerase family A, member 2 [Source:HGNC Symbol;Acc:HGNC:14180]
ENSCJAG00000019795	KNOWN_BY_PROJECTION	protein_coding	PDCD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	158383685	158390770	R	programmed cell death 1 [Source:HGNC Symbol;Acc:HGNC:8760]
ENSCJAG00000011176	KNOWN_BY_PROJECTION	protein_coding	NEU4	chromosome:C_jacchus3.2.1:6:1:158406734:1	158366972	158371410	D	sialidase 4 [Source:HGNC Symbol;Acc:HGNC:21328]
ENSCJAG00000011184	KNOWN_BY_PROJECTION	protein_coding	GAL3ST2	chromosome:C_jacchus3.2.1:6:1:158406734:1	158330646	158362729	D	galactose-3-O-sulfotransferase 2 [Source:HGNC Symbol;Acc:HGNC:24869]
ENSCJAG00000007835	KNOWN	protein_coding	COPS7A	chromosome:C_jacchus3.2.1:9:1:124281992:1	18498424	18506242	D	COP9 signalosome complex subunit 7a {ECO:0000313|EMBL:JAB08780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014626}  [Source:UniProtKB/TrEMBL;Acc:F7I285]
ENSCJAG00000011190	KNOWN_BY_PROJECTION	protein_coding	D2HGDH	chromosome:C_jacchus3.2.1:6:1:158406734:1	158291223	158324481	D	D-2-hydroxyglutarate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:28358]
ENSCJAG00000007910	KNOWN	protein_coding	PIANP	chromosome:C_jacchus3.2.1:9:1:124281992:1	18465966	18473233	R	PILR alpha-associated neural protein isoform a {ECO:0000313|EMBL:JAB20996.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014681}  [Source:UniProtKB/TrEMBL;Acc:F7HV06]
ENSCJAG00000011745	KNOWN_BY_PROJECTION	protein_coding	RGS11	chromosome:C_jacchus3.2.1:12:1:121768101:1	270727	279673	R	regulator of G-protein signaling 11 [Source:HGNC Symbol;Acc:HGNC:9993]
ENSCJAG00000033074	NOVEL	protein_coding	ENSCJAG00000033074	chromosome:C_jacchus3.2.1:12:1:121768101:1	206385	216423	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048930}  [Source:UniProtKB/TrEMBL;Acc:F6QIF3]
ENSCJAG00000006066	KNOWN_BY_PROJECTION	protein_coding	STK25	chromosome:C_jacchus3.2.1:6:1:158406734:1	158047989	158061400	R	serine/threonine kinase 25 [Source:HGNC Symbol;Acc:HGNC:11404]
ENSCJAG00000006116	NOVEL	pseudogene	ENSCJAG00000006116	chromosome:C_jacchus3.2.1:6:1:158406734:1	158031222	158031792	D	<no descrition>
ENSCJAG00000011647	KNOWN	protein_coding	HBQ1_1	chromosome:C_jacchus3.2.1:12:1:121768101:1	179456	194462	D	Hemoglobin subunit alpha {ECO:0000313|EMBL:JAB11585.1}; Theta 1 globin (Predicted) {ECO:0000313|EMBL:ABZ80337.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021428}  [Source:UniProtKB/TrEMBL;Acc:B0VX78]
ENSCJAG00000008090	KNOWN_BY_PROJECTION	protein_coding	ACRBP	chromosome:C_jacchus3.2.1:9:1:124281992:1	18405005	18414718	R	acrosin binding protein [Source:HGNC Symbol;Acc:HGNC:17195]
ENSCJAG00000034676	NOVEL	protein_coding	ENSCJAG00000034676	chromosome:C_jacchus3.2.1:12:1:121768101:1	166798	167674	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7IM79]
ENSCJAG00000006087	KNOWN_BY_PROJECTION	protein_coding	FARP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	157920286	158045973	D	FERM, RhoGEF and pleckstrin domain protein 2 [Source:HGNC Symbol;Acc:HGNC:16460]
ENSCJAG00000007944	KNOWN	protein_coding	ZNF384	chromosome:C_jacchus3.2.1:9:1:124281992:1	18388164	18461714	R	Lysophosphatidic acid receptor 5 {ECO:0000313|EMBL:JAB02905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049390}  [Source:UniProtKB/TrEMBL;Acc:F6XUY5]
ENSCJAG00000037676	KNOWN_BY_PROJECTION	protein_coding	IFFO1	chromosome:C_jacchus3.2.1:9:1:124281992:1	18306186	18322565	R	intermediate filament family orphan 1 [Source:HGNC Symbol;Acc:HGNC:24970]
ENSCJAG00000008234	NOVEL	protein_coding	ENSCJAG00000008234	chromosome:C_jacchus3.2.1:9:1:124281992:1	18300487	18305257	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7FF06]
ENSCJAG00000032228	KNOWN_BY_PROJECTION	protein_coding	ANO7	chromosome:C_jacchus3.2.1:6:1:158406734:1	157723833	157757692	D	anoctamin 7 [Source:HGNC Symbol;Acc:HGNC:31677]
ENSCJAG00000033034	NOVEL	protein_coding	ENSCJAG00000033034	chromosome:C_jacchus3.2.1:6:1:158406734:1	157740683	157745548	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051698}  [Source:UniProtKB/TrEMBL;Acc:F6XV73]
ENSCJAG00000006152	KNOWN_BY_PROJECTION	protein_coding	HDLBP	chromosome:C_jacchus3.2.1:6:1:158406734:1	157762078	157851008	R	high density lipoprotein binding protein [Source:HGNC Symbol;Acc:HGNC:4857]
ENSCJAG00000000739	NOVEL	protein_coding	ENSCJAG00000000739	chromosome:C_jacchus3.2.1:9:1:124281992:1	18256939	18258175	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001263}  [Source:UniProtKB/TrEMBL;Acc:F6YI55]
ENSCJAG00000006318	KNOWN_BY_PROJECTION	protein_coding	PASK	chromosome:C_jacchus3.2.1:6:1:158406734:1	157637186	157686649	R	PAS domain containing serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:17270]
ENSCJAG00000000715	NOVEL	protein_coding	ENSCJAG00000000715	chromosome:C_jacchus3.2.1:9:1:124281992:1	18182943	18213325	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049750}  [Source:UniProtKB/TrEMBL;Acc:F7CS23]
ENSCJAG00000006352	KNOWN_BY_PROJECTION	protein_coding	SNED1	chromosome:C_jacchus3.2.1:6:1:158406734:1	157560353	157619741	D	sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
ENSCJAG00000006365	NOVEL	protein_coding	ENSCJAG00000006365	chromosome:C_jacchus3.2.1:6:1:158406734:1	157453440	157522926	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049223}  [Source:UniProtKB/TrEMBL;Acc:F6W2C4]
ENSCJAG00000006386	KNOWN_BY_PROJECTION	protein_coding	C2orf54	chromosome:C_jacchus3.2.1:6:1:158406734:1	157426988	157435399	R	chromosome 2 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:26216]
ENSCJAG00000006425	KNOWN_BY_PROJECTION	protein_coding	KIF1A	chromosome:C_jacchus3.2.1:6:1:158406734:1	157228309	157322882	R	kinesin family member 1A [Source:HGNC Symbol;Acc:HGNC:888]
ENSCJAG00000000674	KNOWN	protein_coding	TNFRSF1A	chromosome:C_jacchus3.2.1:9:1:124281992:1	18067666	18082762	R	Tumor necrosis factor receptor superfamily member 1A {ECO:0000313|EMBL:JAB05919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001167}  [Source:UniProtKB/TrEMBL;Acc:F6UYQ7]
ENSCJAG00000000666	KNOWN_BY_PROJECTION	protein_coding	PLEKHG6	chromosome:C_jacchus3.2.1:9:1:124281992:1	18049697	18067400	D	pleckstrin homology domain containing, family G (with RhoGef domain) member 6 [Source:HGNC Symbol;Acc:HGNC:25562]
ENSCJAG00000000665	NOVEL	protein_coding	ENSCJAG00000000665	chromosome:C_jacchus3.2.1:9:1:124281992:1	18028998	18031640	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001140}  [Source:UniProtKB/TrEMBL;Acc:F6VJW4]
ENSCJAG00000006547	NOVEL	protein_coding	ENSCJAG00000006547	chromosome:C_jacchus3.2.1:6:1:158406734:1	157202550	157208640	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012087}  [Source:UniProtKB/TrEMBL;Acc:F7GFK9]
ENSCJAG00000000659	KNOWN_BY_PROJECTION	protein_coding	CD9	chromosome:C_jacchus3.2.1:9:1:124281992:1	17935070	17973424	D	CD9 molecule [Source:HGNC Symbol;Acc:HGNC:1709]
ENSCJAG00000006904	NOVEL	protein_coding	ENSCJAG00000006904	chromosome:C_jacchus3.2.1:9:1:124281992:1	17906335	17906808	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052452}  [Source:UniProtKB/TrEMBL;Acc:F7I2H9]
ENSCJAG00000006582	KNOWN_BY_PROJECTION	protein_coding	RNPEPL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	157096854	157102369	D	arginyl aminopeptidase (aminopeptidase B)-like 1 [Source:HGNC Symbol;Acc:HGNC:10079]
ENSCJAG00000006583	KNOWN_BY_PROJECTION	protein_coding	DUSP28	chromosome:C_jacchus3.2.1:6:1:158406734:1	157083970	157084572	D	dual specificity phosphatase 28 [Source:HGNC Symbol;Acc:HGNC:33237]
ENSCJAG00000008257	KNOWN_BY_PROJECTION	protein_coding	ANKMY1	chromosome:C_jacchus3.2.1:6:1:158406734:1	157003604	157079794	R	ankyrin repeat and MYND domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20987]
ENSCJAG00000019063	NOVEL	protein_coding	ENSCJAG00000019063	chromosome:C_jacchus3.2.1:6:1:158406734:1	156966020	156971698	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035399}  [Source:UniProtKB/TrEMBL;Acc:F7HUM1]
ENSCJAG00000034190	NOVEL	protein_coding	ENSCJAG00000034190	chromosome:C_jacchus3.2.1:6:1:158406734:1	156912947	156915273	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046107}  [Source:UniProtKB/TrEMBL;Acc:F6XNC8]
ENSCJAG00000019058	KNOWN_BY_PROJECTION	protein_coding	GPC1	chromosome:C_jacchus3.2.1:6:1:158406734:1	156824859	156981097	D	glypican 1 [Source:HGNC Symbol;Acc:HGNC:4449]
ENSCJAG00000000613	KNOWN_BY_PROJECTION	protein_coding	VWF	chromosome:C_jacchus3.2.1:9:1:124281992:1	17679941	17860155	R	von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
ENSCJAG00000019076	NOVEL	protein_coding	ENSCJAG00000019076	chromosome:C_jacchus3.2.1:6:1:158406734:1	156649771	156650042	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035407}  [Source:UniProtKB/TrEMBL;Acc:F7ISI5]
ENSCJAG00000019077	KNOWN_BY_PROJECTION	protein_coding	MYEOV2	chromosome:C_jacchus3.2.1:6:1:158406734:1	156634886	156644711	R	myeloma overexpressed 2 [Source:HGNC Symbol;Acc:HGNC:21314]
ENSCJAG00000022267	NOVEL	protein_coding	ENSCJAG00000022267	chromosome:C_jacchus3.2.1:6:1:158406734:1	156569648	156732243	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HZV5]
ENSCJAG00000019091	KNOWN_BY_PROJECTION	protein_coding	NDUFA10	chromosome:C_jacchus3.2.1:6:1:158406734:1	156526149	156564333	R	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa [Source:HGNC Symbol;Acc:HGNC:7684]
ENSCJAG00000034894	NOVEL	protein_coding	ENSCJAG00000034894	chromosome:C_jacchus3.2.1:6:1:158406734:1	155933650	155933990	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046219}  [Source:UniProtKB/TrEMBL;Acc:F7C8R3]
ENSCJAG00000000605	KNOWN	protein_coding	NTF3	chromosome:C_jacchus3.2.1:9:1:124281992:1	17160867	17226369	D	Neurotrophin-3 isoform 1 preproprotein {ECO:0000313|EMBL:JAB02622.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001035}  [Source:UniProtKB/TrEMBL;Acc:F7B3D1]
ENSCJAG00000000606	KNOWN_BY_PROJECTION	protein_coding	ANO2	chromosome:C_jacchus3.2.1:9:1:124281992:1	17295107	17655187	R	anoctamin 2, calcium activated chloride channel [Source:HGNC Symbol;Acc:HGNC:1183]
ENSCJAG00000000600	KNOWN_BY_PROJECTION	protein_coding	KCNA5	chromosome:C_jacchus3.2.1:9:1:124281992:1	16595196	16728817	D	potassium channel, voltage gated shaker related subfamily A, member 5 [Source:HGNC Symbol;Acc:HGNC:6224]
ENSCJAG00000020407	KNOWN_BY_PROJECTION	protein_coding	GALNT8	chromosome:C_jacchus3.2.1:9:1:124281992:1	16378759	16428712	D	polypeptide N-acetylgalactosaminyltransferase 8 [Source:HGNC Symbol;Acc:HGNC:4130]
ENSCJAG00000002625	NOVEL	protein_coding	ENSCJAG00000002625	chromosome:C_jacchus3.2.1:9:1:124281992:1	16281899	16339179	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004754}  [Source:UniProtKB/TrEMBL;Acc:F7B597]
ENSCJAG00000016491	NOVEL	protein_coding	ENSCJAG00000016491	chromosome:C_jacchus3.2.1:9:1:124281992:1	16188879	16214125	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030369}  [Source:UniProtKB/TrEMBL;Acc:F6VS04]
ENSCJAG00000002622	KNOWN_BY_PROJECTION	protein_coding	AKAP3	chromosome:C_jacchus3.2.1:9:1:124281992:1	16248604	16277812	R	A kinase (PRKA) anchor protein 3 [Source:HGNC Symbol;Acc:HGNC:373]
ENSCJAG00000009423	KNOWN_BY_PROJECTION	protein_coding	HDAC4	chromosome:C_jacchus3.2.1:6:1:158406734:1	155551077	155932155	R	histone deacetylase 4 [Source:HGNC Symbol;Acc:HGNC:14063]
ENSCJAG00000023006	KNOWN_BY_PROJECTION	protein_coding	TWIST2	chromosome:C_jacchus3.2.1:6:1:158406734:1	155376290	155400114	D	twist family bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:20670]
ENSCJAG00000000414	KNOWN	protein_coding	ASB1	chromosome:C_jacchus3.2.1:6:1:158406734:1	154969132	154988795	D	Ankyrin repeat and SOCS box protein 1 {ECO:0000313|EMBL:JAB04548.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000708}  [Source:UniProtKB/TrEMBL;Acc:F6SNP7]
ENSCJAG00000001628	KNOWN	protein_coding	C12ORF4	chromosome:C_jacchus3.2.1:9:1:124281992:1	16148494	16188441	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002924}; Uncharacterized protein C12orf4 {ECO:0000313|EMBL:JAB09346.1}  [Source:UniProtKB/TrEMBL;Acc:F7HXB5]
ENSCJAG00000001613	KNOWN_BY_PROJECTION	protein_coding	FGF6	chromosome:C_jacchus3.2.1:9:1:124281992:1	16084493	16095860	R	fibroblast growth factor 6 [Source:HGNC Symbol;Acc:HGNC:3684]
ENSCJAG00000001609	KNOWN_BY_PROJECTION	protein_coding	FGF23	chromosome:C_jacchus3.2.1:9:1:124281992:1	16008611	16019655	R	fibroblast growth factor 23 [Source:HGNC Symbol;Acc:HGNC:3680]
ENSCJAG00000000419	KNOWN_BY_PROJECTION	protein_coding	TRAF3IP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	154831919	154937264	D	TNF receptor-associated factor 3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:17861]
ENSCJAG00000001601	KNOWN_BY_PROJECTION	protein_coding	C12orf5	chromosome:C_jacchus3.2.1:9:1:124281992:1	15968871	15992892	D	chromosome 12 open reading frame 5 [Source:HGNC Symbol;Acc:HGNC:1185]
ENSCJAG00000001593	KNOWN	protein_coding	CCND2	chromosome:C_jacchus3.2.1:9:1:124281992:1	15919214	15946958	D	G1/S-specific cyclin-D2 {ECO:0000313|EMBL:JAB09036.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002852}  [Source:UniProtKB/TrEMBL;Acc:F7I947]
ENSCJAG00000001588	NOVEL	protein_coding	ENSCJAG00000001588	chromosome:C_jacchus3.2.1:9:1:124281992:1	15858222	15860983	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052465}  [Source:UniProtKB/TrEMBL;Acc:F7I2D7]
ENSCJAG00000001586	NOVEL	pseudogene	ENSCJAG00000001586	chromosome:C_jacchus3.2.1:9:1:124281992:1	15760120	15760883	R	<no descrition>
ENSCJAG00000001582	NOVEL	pseudogene	ENSCJAG00000001582	chromosome:C_jacchus3.2.1:9:1:124281992:1	15718353	15718620	R	<no descrition>
ENSCJAG00000001581	NOVEL	pseudogene	ENSCJAG00000001581	chromosome:C_jacchus3.2.1:9:1:124281992:1	15497551	15499249	D	<no descrition>
ENSCJAG00000000428	KNOWN	protein_coding	PER2	chromosome:C_jacchus3.2.1:6:1:158406734:1	154785647	154863969	R	Period circadian protein homolog 2 {ECO:0000313|EMBL:JAB27524.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000735}  [Source:UniProtKB/TrEMBL;Acc:F6SDM4]
ENSCJAG00000001570	KNOWN	protein_coding	PARP11	chromosome:C_jacchus3.2.1:9:1:124281992:1	15467973	15514090	R	Poly [ADP-ribose] polymerase 11 {ECO:0000313|EMBL:JAB04241.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002820}  [Source:UniProtKB/TrEMBL;Acc:F7IBI0]
ENSCJAG00000031875	NOVEL	protein_coding	ENSCJAG00000031875	chromosome:C_jacchus3.2.1:9:1:124281992:1	15397103	15398295	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050300}  [Source:UniProtKB/TrEMBL;Acc:F7GYN9]
ENSCJAG00000000434	KNOWN_BY_PROJECTION	protein_coding	HES6	chromosome:C_jacchus3.2.1:6:1:158406734:1	154776747	154778898	R	hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]
ENSCJAG00000018917	KNOWN_BY_PROJECTION	protein_coding	CRACR2A	chromosome:C_jacchus3.2.1:9:1:124281992:1	15251611	15390618	R	calcium release activated channel regulator 2A [Source:HGNC Symbol;Acc:HGNC:28657]
ENSCJAG00000000438	NOVEL	pseudogene	ENSCJAG00000000438	chromosome:C_jacchus3.2.1:6:1:158406734:1	154771267	154771622	R	<no descrition>
ENSCJAG00000000443	KNOWN	protein_coding	ILKAP	chromosome:C_jacchus3.2.1:6:1:158406734:1	154708262	154739026	R	Integrin-linked kinase-associated serine/threonine phosphatase 2C {ECO:0000313|EMBL:JAB02947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000768}  [Source:UniProtKB/TrEMBL;Acc:F6S2E7]
ENSCJAG00000000455	NOVEL	protein_coding	ENSCJAG00000000455	chromosome:C_jacchus3.2.1:6:1:158406734:1	154705096	154705505	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000769}  [Source:UniProtKB/TrEMBL;Acc:F6S2D9]
ENSCJAG00000000457	NOVEL	pseudogene	ENSCJAG00000000457	chromosome:C_jacchus3.2.1:6:1:158406734:1	154691285	154691516	R	<no descrition>
ENSCJAG00000000456	KNOWN_BY_PROJECTION	protein_coding	FAM132B	chromosome:C_jacchus3.2.1:6:1:158406734:1	154697760	154705044	D	family with sequence similarity 132, member B [Source:HGNC Symbol;Acc:HGNC:26727]
ENSCJAG00000000459	KNOWN_BY_PROJECTION	protein_coding	KLHL30	chromosome:C_jacchus3.2.1:6:1:158406734:1	154675465	154685527	D	kelch-like family member 30 [Source:HGNC Symbol;Acc:HGNC:24770]
ENSCJAG00000018891	KNOWN	protein_coding	PRMT8	chromosome:C_jacchus3.2.1:9:1:124281992:1	15026758	15228095	D	Protein arginine N-methyltransferase 8 isoform 1 {ECO:0000313|EMBL:JAB15153.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035113}  [Source:UniProtKB/TrEMBL;Acc:F7I1T8]
ENSCJAG00000000467	KNOWN_BY_PROJECTION	protein_coding	ESPNL	chromosome:C_jacchus3.2.1:6:1:158406734:1	154620786	154648075	D	espin-like [Source:HGNC Symbol;Acc:HGNC:27937]
ENSCJAG00000018879	NOVEL	pseudogene	ENSCJAG00000018879	chromosome:C_jacchus3.2.1:9:1:124281992:1	14689961	14690829	D	<no descrition>
ENSCJAG00000018882	KNOWN	protein_coding	TSPAN9	chromosome:C_jacchus3.2.1:9:1:124281992:1	14845649	14929119	D	Tetraspanin-9 {ECO:0000313|EMBL:JAB05702.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035075}  [Source:UniProtKB/TrEMBL;Acc:F7I8Y3]
ENSCJAG00000000471	KNOWN_BY_PROJECTION	protein_coding	SCLY	chromosome:C_jacchus3.2.1:6:1:158406734:1	154575799	154619501	D	selenocysteine lyase [Source:HGNC Symbol;Acc:HGNC:18161]
ENSCJAG00000018829	NOVEL	protein_coding	ENSCJAG00000018829	chromosome:C_jacchus3.2.1:9:1:124281992:1	14580080	14671627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035057}  [Source:UniProtKB/TrEMBL;Acc:F7IBB5]
ENSCJAG00000000480	NOVEL	protein_coding	ENSCJAG00000000480	chromosome:C_jacchus3.2.1:6:1:158406734:1	154437874	154438882	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000812}  [Source:UniProtKB/TrEMBL;Acc:F6Q812]
ENSCJAG00000000476	KNOWN	protein_coding	UBE2F	chromosome:C_jacchus3.2.1:6:1:158406734:1	154478308	154559013	D	NEDD8-conjugating enzyme UBE2F isoform 1 {ECO:0000313|EMBL:JAB04104.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000809}  [Source:UniProtKB/TrEMBL;Acc:F6Q846]
ENSCJAG00000018796	KNOWN_BY_PROJECTION	protein_coding	TULP3	chromosome:C_jacchus3.2.1:9:1:124281992:1	14504291	14561423	D	tubby like protein 3 [Source:HGNC Symbol;Acc:HGNC:12425]
ENSCJAG00000018793	NOVEL	pseudogene	ENSCJAG00000018793	chromosome:C_jacchus3.2.1:9:1:124281992:1	14501918	14502467	R	<no descrition>
ENSCJAG00000018790	KNOWN	protein_coding	RHNO1	chromosome:C_jacchus3.2.1:9:1:124281992:1	14489010	14500679	D	RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform 1 {ECO:0000313|EMBL:JAB07291.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034914}  [Source:UniProtKB/TrEMBL;Acc:F7ICY7]
ENSCJAG00000000481	KNOWN	protein_coding	RAMP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	154340237	154401382	D	Receptor activity-modifying protein 1 {ECO:0000313|EMBL:JAB01919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000817}  [Source:UniProtKB/TrEMBL;Acc:F6PYH1]
ENSCJAG00000000484	KNOWN_BY_PROJECTION	protein_coding	RBM44	chromosome:C_jacchus3.2.1:6:1:158406734:1	154305431	154333195	D	RNA binding motif protein 44 [Source:HGNC Symbol;Acc:HGNC:24756]
ENSCJAG00000018781	KNOWN_BY_PROJECTION	protein_coding	FOXM1	chromosome:C_jacchus3.2.1:9:1:124281992:1	14470111	14488896	R	forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]
ENSCJAG00000018779	NOVEL	protein_coding	ENSCJAG00000018779	chromosome:C_jacchus3.2.1:9:1:124281992:1	14460311	14469424	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034881}  [Source:UniProtKB/TrEMBL;Acc:F7IMC5]
ENSCJAG00000018774	KNOWN_BY_PROJECTION	protein_coding	NRIP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	14434718	14442910	R	nuclear receptor interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:23078]
ENSCJAG00000000491	KNOWN_BY_PROJECTION	protein_coding	LRRFIP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	154110244	154279390	D	leucine rich repeat (in FLII) interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:6702]
ENSCJAG00000033231	NOVEL	protein_coding	ENSCJAG00000033231	chromosome:C_jacchus3.2.1:6:1:158406734:1	154068562	154069541	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052014}  [Source:UniProtKB/TrEMBL;Acc:F7ILK3]
ENSCJAG00000002210	KNOWN_BY_PROJECTION	protein_coding	MLPH	chromosome:C_jacchus3.2.1:6:1:158406734:1	153964639	154035542	D	melanophilin [Source:HGNC Symbol;Acc:HGNC:29643]
ENSCJAG00000002208	KNOWN_BY_PROJECTION	protein_coding	PRLH	chromosome:C_jacchus3.2.1:6:1:158406734:1	154048340	154048953	D	prolactin releasing hormone [Source:HGNC Symbol;Acc:HGNC:17945]
ENSCJAG00000002221	NOVEL	protein_coding	ENSCJAG00000002221	chromosome:C_jacchus3.2.1:6:1:158406734:1	153896069	153906511	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003999}  [Source:UniProtKB/TrEMBL;Acc:F7DAI5]
ENSCJAG00000018765	KNOWN	protein_coding	ITFG2	chromosome:C_jacchus3.2.1:9:1:124281992:1	14416491	14438173	D	Integrin-alpha FG-GAP repeat-containing protein 2 {ECO:0000313|EMBL:JAB02670.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048202}  [Source:UniProtKB/TrEMBL;Acc:F7FQ85]
ENSCJAG00000018746	KNOWN	protein_coding	FKBP4	chromosome:C_jacchus3.2.1:9:1:124281992:1	14397426	14409285	D	Peptidyl-prolyl cis-trans isomerase FKBP4 {ECO:0000313|EMBL:JAB02066.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034843}  [Source:UniProtKB/TrEMBL;Acc:F7IS31]
ENSCJAG00000018744	NOVEL	protein_coding	ENSCJAG00000018744	chromosome:C_jacchus3.2.1:9:1:124281992:1	14382319	14383375	R	<no descrition>
ENSCJAG00000000915	NOVEL	protein_coding	ENSCJAG00000000915	chromosome:C_jacchus3.2.1:9:1:124281992:1	14336532	14343561	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001549}  [Source:UniProtKB/TrEMBL;Acc:F6ZXX4]
ENSCJAG00000000914	KNOWN_BY_PROJECTION	protein_coding	GDF15	chromosome:C_jacchus3.2.1:9:1:124281992:1	14329705	14333768	D	growth differentiation factor 15 [Source:HGNC Symbol;Acc:HGNC:30142]
ENSCJAG00000002226	KNOWN_BY_PROJECTION	protein_coding	COL6A3	chromosome:C_jacchus3.2.1:6:1:158406734:1	153790338	153889458	R	collagen, type VI, alpha 3 [Source:HGNC Symbol;Acc:HGNC:2213]
ENSCJAG00000034884	NOVEL	protein_coding	ENSCJAG00000034884	chromosome:C_jacchus3.2.1:6:1:158406734:1	153728745	153729189	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044882}  [Source:UniProtKB/TrEMBL;Acc:F7HGD3]
ENSCJAG00000002266	KNOWN_BY_PROJECTION	protein_coding	NCK1	chromosome:C_jacchus3.2.1:6:1:158406734:1	153604512	153772207	R	NCK adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:7664]
ENSCJAG00000002267	KNOWN	protein_coding	COPS8	chromosome:C_jacchus3.2.1:6:1:158406734:1	153551795	153565311	D	COP9 signalosome complex subunit 8 isoform 1 {ECO:0000313|EMBL:JAB08962.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048817}  [Source:UniProtKB/TrEMBL;Acc:F6TJS7]
ENSCJAG00000022033	KNOWN	protein_coding	ACKR3	chromosome:C_jacchus3.2.1:6:1:158406734:1	153024603	153037130	D	C-X-C chemokine receptor type 7 {ECO:0000313|EMBL:JAB28859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040703}  [Source:UniProtKB/TrEMBL;Acc:F7HZX1]
ENSCJAG00000004446	KNOWN_BY_PROJECTION	protein_coding	IQCA1	chromosome:C_jacchus3.2.1:6:1:158406734:1	152745689	152946635	R	IQ motif containing with AAA domain 1 [Source:HGNC Symbol;Acc:HGNC:26195]
ENSCJAG00000004432	KNOWN_BY_PROJECTION	protein_coding	ASB18	chromosome:C_jacchus3.2.1:6:1:158406734:1	152590461	152668733	R	ankyrin repeat and SOCS box containing 18 [Source:HGNC Symbol;Acc:HGNC:19770]
ENSCJAG00000004419	KNOWN_BY_PROJECTION	protein_coding	GBX2	chromosome:C_jacchus3.2.1:6:1:158406734:1	152557331	152559688	R	gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]
ENSCJAG00000004416	NOVEL	protein_coding	ENSCJAG00000004416	chromosome:C_jacchus3.2.1:6:1:158406734:1	152169748	152175989	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007999}  [Source:UniProtKB/TrEMBL;Acc:F6YRF2]
ENSCJAG00000004382	KNOWN	protein_coding	AGAP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	152057610	152521354	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049625}  [Source:UniProtKB/TrEMBL;Acc:F7ADT0]
ENSCJAG00000014272	KNOWN_BY_PROJECTION	protein_coding	SH3BP4	chromosome:C_jacchus3.2.1:6:1:158406734:1	151348385	151451782	D	SH3-domain binding protein 4 [Source:HGNC Symbol;Acc:HGNC:10826]
ENSCJAG00000014269	KNOWN	protein_coding	ARL4C	chromosome:C_jacchus3.2.1:6:1:158406734:1	150889368	150892592	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026236}  [Source:UniProtKB/TrEMBL;Acc:F7HK18]
ENSCJAG00000014267	NOVEL	protein_coding	ENSCJAG00000014267	chromosome:C_jacchus3.2.1:6:1:158406734:1	150882043	150883014	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026231}  [Source:UniProtKB/TrEMBL;Acc:F7HK32]
ENSCJAG00000014263	KNOWN_BY_PROJECTION	protein_coding	SPP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	150415840	150437330	D	secreted phosphoprotein 2, 24kDa [Source:HGNC Symbol;Acc:HGNC:11256]
ENSCJAG00000014167	NOVEL	protein_coding	TRPM8	chromosome:C_jacchus3.2.1:6:1:158406734:1	150288188	150380945	D	Transient receptor potential cation channel, subfamily M, member 8 (Predicted) {ECO:0000313|EMBL:ABY79104.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045464}  [Source:UniProtKB/TrEMBL;Acc:B0KW81]
ENSCJAG00000014164	NOVEL	protein_coding	MSL3L1	chromosome:C_jacchus3.2.1:6:1:158406734:1	150224287	150226942	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046531}  [Source:UniProtKB/TrEMBL;Acc:F7I647]
ENSCJAG00000014161	KNOWN_BY_PROJECTION	protein_coding	HJURP	chromosome:C_jacchus3.2.1:6:1:158406734:1	150197160	150213937	R	Holliday junction recognition protein [Source:HGNC Symbol;Acc:HGNC:25444]
ENSCJAG00000014142	KNOWN_BY_PROJECTION	protein_coding	MROH2A	chromosome:C_jacchus3.2.1:6:1:158406734:1	150152727	150194919	D	maestro heat-like repeat family member 2A [Source:HGNC Symbol;Acc:HGNC:27936]
ENSCJAG00000014140	NOVEL	pseudogene	ENSCJAG00000014140	chromosome:C_jacchus3.2.1:6:1:158406734:1	150097896	150098287	R	<no descrition>
ENSCJAG00000014130	KNOWN	protein_coding	UGT1A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	150030670	150117673	D	UDP-glucuronosyltransferase 1-3 {ECO:0000313|EMBL:JAB08414.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025983}  [Source:UniProtKB/TrEMBL;Acc:F7CQQ8]
ENSCJAG00000014127	NOVEL	pseudogene	ENSCJAG00000014127	chromosome:C_jacchus3.2.1:6:1:158406734:1	149990362	149990763	D	<no descrition>
ENSCJAG00000000732	KNOWN_BY_PROJECTION	protein_coding	CACNA1C	chromosome:C_jacchus3.2.1:9:1:124281992:1	14070183	14316874	D	calcium channel, voltage-dependent, L type, alpha 1C subunit [Source:HGNC Symbol;Acc:HGNC:1390]
ENSCJAG00000000721	KNOWN_BY_PROJECTION	protein_coding	DCP1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	13550873	13604713	R	decapping mRNA 1B [Source:HGNC Symbol;Acc:HGNC:24451]
ENSCJAG00000000716	KNOWN	protein_coding	LRTM2	chromosome:C_jacchus3.2.1:9:1:124281992:1	13417094	13435029	D	Leucine-rich repeat and transmembrane domain-containing protein 2 {ECO:0000313|EMBL:JAB17820.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001225}  [Source:UniProtKB/TrEMBL;Acc:F6ZI01]
ENSCJAG00000000683	KNOWN	protein_coding	ADIPOR2	chromosome:C_jacchus3.2.1:9:1:124281992:1	13300309	13384703	D	Adiponectin receptor protein 2 {ECO:0000313|EMBL:JAB05660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001182}  [Source:UniProtKB/TrEMBL;Acc:F6UC87]
ENSCJAG00000000690	KNOWN_BY_PROJECTION	protein_coding	CACNA2D4	chromosome:C_jacchus3.2.1:9:1:124281992:1	13391243	13522944	R	calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
ENSCJAG00000014074	NOVEL	protein_coding	MA_R131_JSME7C4R	chromosome:C_jacchus3.2.1:6:1:158406734:1	149916889	150004820	R	Ubiquitin carboxyl-terminal hydrolase 40 (Predicted) {ECO:0000313|EMBL:ABY79097.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048418}  [Source:UniProtKB/TrEMBL;Acc:B0KW74]
ENSCJAG00000000677	KNOWN	protein_coding	WNT5B	chromosome:C_jacchus3.2.1:9:1:124281992:1	13181673	13255157	D	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F6UY57]
ENSCJAG00000031340	NOVEL	protein_coding	ENSCJAG00000031340	chromosome:C_jacchus3.2.1:9:1:124281992:1	13112407	13112997	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020984}  [Source:UniProtKB/TrEMBL;Acc:F7GIW5]
ENSCJAG00000014047	KNOWN_BY_PROJECTION	protein_coding	DGKD	chromosome:C_jacchus3.2.1:6:1:158406734:1	149831252	149908390	D	diacylglycerol kinase, delta 130kDa [Source:HGNC Symbol;Acc:HGNC:2851]
ENSCJAG00000000643	KNOWN	protein_coding	ERC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	12518253	13074324	D	ELKS/Rab6-interacting/CAST family member 1 isoform epsilon {ECO:0000313|EMBL:JAB06234.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001147}  [Source:UniProtKB/TrEMBL;Acc:F6VJN5]
ENSCJAG00000014018	KNOWN_BY_PROJECTION	protein_coding	SAG	chromosome:C_jacchus3.2.1:6:1:158406734:1	149744634	149787625	D	S-antigen; retina and pineal gland (arrestin) [Source:HGNC Symbol;Acc:HGNC:10521]
ENSCJAG00000013995	KNOWN_BY_PROJECTION	protein_coding	ATG16L1	chromosome:C_jacchus3.2.1:6:1:158406734:1	149690469	149730202	D	autophagy related 16-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:21498]
ENSCJAG00000004320	NOVEL	protein_coding	ENSCJAG00000004320	chromosome:C_jacchus3.2.1:6:1:158406734:1	149665618	149677875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007818}  [Source:UniProtKB/TrEMBL;Acc:F6UKV4]
ENSCJAG00000000631	KNOWN	protein_coding	RAD52	chromosome:C_jacchus3.2.1:9:1:124281992:1	12421562	12517033	R	DNA repair protein RAD52 homolog {ECO:0000313|EMBL:JAB04040.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049434}  [Source:UniProtKB/TrEMBL;Acc:F7BYS3]
ENSCJAG00000013979	KNOWN_BY_PROJECTION	protein_coding	INPP5D	chromosome:C_jacchus3.2.1:6:1:158406734:1	149504704	149960891	D	inositol polyphosphate-5-phosphatase, 145kDa [Source:HGNC Symbol;Acc:HGNC:6079]
ENSCJAG00000013977	KNOWN_BY_PROJECTION	protein_coding	NEU2	chromosome:C_jacchus3.2.1:6:1:158406734:1	149474015	149476649	D	sialidase 2 (cytosolic sialidase) [Source:HGNC Symbol;Acc:HGNC:7759]
ENSCJAG00000000575	KNOWN_BY_PROJECTION	protein_coding	WNK1	chromosome:C_jacchus3.2.1:9:1:124281992:1	12275042	12420188	D	WNK lysine deficient protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:14540]
ENSCJAG00000000568	KNOWN_BY_PROJECTION	protein_coding	NINJ2	chromosome:C_jacchus3.2.1:9:1:124281992:1	12077757	12181767	R	ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]
ENSCJAG00000000556	KNOWN_BY_PROJECTION	protein_coding	B4GALNT3	chromosome:C_jacchus3.2.1:9:1:124281992:1	11954085	12074185	D	beta-1,4-N-acetyl-galactosaminyl transferase 3 [Source:HGNC Symbol;Acc:HGNC:24137]
ENSCJAG00000002111	KNOWN_BY_PROJECTION	protein_coding	CCDC77	chromosome:C_jacchus3.2.1:9:1:124281992:1	11904658	11937756	D	coiled-coil domain containing 77 [Source:HGNC Symbol;Acc:HGNC:28203]
ENSCJAG00000006732	NOVEL	protein_coding	ENSCJAG00000006732	chromosome:C_jacchus3.2.1:9:1:124281992:1	11780083	11799518	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012449}  [Source:UniProtKB/TrEMBL;Acc:F7F9Y4]
ENSCJAG00000006719	NOVEL	protein_coding	ENSCJAG00000006719	chromosome:C_jacchus3.2.1:9:1:124281992:1	11814558	11821454	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012427}  [Source:UniProtKB/TrEMBL;Acc:F7FP14]
ENSCJAG00000011393	NOVEL	pseudogene	ENSCJAG00000011393	chromosome:C_jacchus3.2.1:9:1:124281992:1	11779335	11779569	R	<no descrition>
ENSCJAG00000013953	KNOWN	protein_coding	NGEF	chromosome:C_jacchus3.2.1:6:1:158406734:1	149327809	149460035	R	Ephexin-1 isoform 2 {ECO:0000313|EMBL:JAB16106.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025683}  [Source:UniProtKB/TrEMBL;Acc:F6ZWI2]
ENSCJAG00000013948	KNOWN_BY_PROJECTION	protein_coding	C2orf82	chromosome:C_jacchus3.2.1:6:1:158406734:1	149318559	149325235	D	chromosome 2 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:33763]
ENSCJAG00000013934	KNOWN_BY_PROJECTION	protein_coding	KCNJ13	chromosome:C_jacchus3.2.1:6:1:158406734:1	149204049	149214382	R	potassium channel, inwardly rectifying subfamily J, member 13 [Source:HGNC Symbol;Acc:HGNC:6259]
ENSCJAG00000013806	KNOWN_BY_PROJECTION	protein_coding	EFHD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	149043339	149113656	D	EF-hand domain family, member D1 [Source:HGNC Symbol;Acc:HGNC:29556]
ENSCJAG00000013816	KNOWN	protein_coding	GIGYF2	chromosome:C_jacchus3.2.1:6:1:158406734:1	149131614	149301659	D	PERQ amino acid-rich with GYF domain-containing protein 2 isoform b {ECO:0000313|EMBL:JAB02745.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025552}  [Source:UniProtKB/TrEMBL;Acc:F6XTD4]
ENSCJAG00000006744	NOVEL	protein_coding	ENSCJAG00000006744	chromosome:C_jacchus3.2.1:9:1:124281992:1	11739229	11779327	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020931}  [Source:UniProtKB/TrEMBL;Acc:F7H5Z3]
ENSCJAG00000013786	KNOWN	protein_coding	EIF4E2	chromosome:C_jacchus3.2.1:6:1:158406734:1	148971842	148988893	D	Eukaryotic translation initiation factor 4E type 2 {ECO:0000313|EMBL:JAB02684.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025388}  [Source:UniProtKB/TrEMBL;Acc:F6YZJ2]
ENSCJAG00000013767	KNOWN_BY_PROJECTION	protein_coding	CHRNG	chromosome:C_jacchus3.2.1:6:1:158406734:1	148960331	148967636	D	cholinergic receptor, nicotinic, gamma (muscle) [Source:HGNC Symbol;Acc:HGNC:1967]
ENSCJAG00000006769	KNOWN_BY_PROJECTION	protein_coding	IQSEC3	chromosome:C_jacchus3.2.1:9:1:124281992:1	11589330	11703895	R	IQ motif and Sec7 domain 3 [Source:HGNC Symbol;Acc:HGNC:29193]
ENSCJAG00000013756	KNOWN_BY_PROJECTION	protein_coding	CHRND	chromosome:C_jacchus3.2.1:6:1:158406734:1	148944039	148954373	D	cholinergic receptor, nicotinic, delta (muscle) [Source:HGNC Symbol;Acc:HGNC:1965]
ENSCJAG00000006797	KNOWN_BY_PROJECTION	protein_coding	SLC6A12	chromosome:C_jacchus3.2.1:9:1:124281992:1	11551537	11576291	D	solute carrier family 6 (neurotransmitter transporter), member 12 [Source:HGNC Symbol;Acc:HGNC:11045]
ENSCJAG00000006840	KNOWN_BY_PROJECTION	protein_coding	SLC6A13	chromosome:C_jacchus3.2.1:9:1:124281992:1	11495780	11545083	D	solute carrier family 6 (neurotransmitter transporter), member 13 [Source:HGNC Symbol;Acc:HGNC:11046]
ENSCJAG00000006853	NOVEL	protein_coding	ENSCJAG00000006853	chromosome:C_jacchus3.2.1:9:1:124281992:1	11518598	11519717	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012686}  [Source:UniProtKB/TrEMBL;Acc:F6TXW7]
ENSCJAG00000006854	NOVEL	pseudogene	ENSCJAG00000006854	chromosome:C_jacchus3.2.1:9:1:124281992:1	11489158	11489690	D	<no descrition>
ENSCJAG00000013711	KNOWN_BY_PROJECTION	protein_coding	ECEL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	148896172	148904525	R	endothelin converting enzyme-like 1 [Source:HGNC Symbol;Acc:HGNC:3147]
ENSCJAG00000013702	KNOWN_BY_PROJECTION	protein_coding	ALPI	chromosome:C_jacchus3.2.1:6:1:158406734:1	148870627	148938734	D	alkaline phosphatase, intestinal [Source:HGNC Symbol;Acc:HGNC:437]
ENSCJAG00000013693	NOVEL	protein_coding	ENSCJAG00000013693	chromosome:C_jacchus3.2.1:6:1:158406734:1	148798191	148825531	D	Alkaline phosphatase {ECO:0000256|RuleBase:RU003947}  [Source:UniProtKB/TrEMBL;Acc:F7B1P4]
ENSCJAG00000014041	NOVEL	protein_coding	ENSCJAG00000014041	chromosome:C_jacchus3.2.1:6:1:158406734:1	148472592	148473278	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042885}  [Source:UniProtKB/TrEMBL;Acc:F6Z4B3]
ENSCJAG00000006858	KNOWN_BY_PROJECTION	protein_coding	KDM5A	chromosome:C_jacchus3.2.1:9:1:124281992:1	11405913	11475299	D	lysine (K)-specific demethylase 5A [Source:HGNC Symbol;Acc:HGNC:9886]
ENSCJAG00000021683	NOVEL	protein_coding	ENSCJAG00000021683	chromosome:C_jacchus3.2.1:9:1:124281992:1	11364902	11373985	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040379}  [Source:UniProtKB/TrEMBL;Acc:F7IR42]
ENSCJAG00000021682	NOVEL	pseudogene	ENSCJAG00000021682	chromosome:C_jacchus3.2.1:9:1:124281992:1	11350199	11350784	D	<no descrition>
ENSCJAG00000021678	KNOWN_BY_PROJECTION	protein_coding	CLEC12A	chromosome:C_jacchus3.2.1:9:1:124281992:1	11299258	11315161	R	C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:HGNC:31713]
ENSCJAG00000021680	KNOWN_BY_PROJECTION	protein_coding	CLEC1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	11240316	11259317	D	C-type lectin domain family 1, member B [Source:HGNC Symbol;Acc:HGNC:24356]
ENSCJAG00000033688	KNOWN_BY_PROJECTION	protein_coding	CLEC12B	chromosome:C_jacchus3.2.1:9:1:124281992:1	11232093	11240536	R	C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:HGNC:31966]
ENSCJAG00000034487	NOVEL	protein_coding	ENSCJAG00000034487	chromosome:C_jacchus3.2.1:9:1:124281992:1	11212307	11219227	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040374}  [Source:UniProtKB/TrEMBL;Acc:F7IR50]
ENSCJAG00000021677	KNOWN_BY_PROJECTION	protein_coding	CLEC9A	chromosome:C_jacchus3.2.1:9:1:124281992:1	11192070	11204560	R	C-type lectin domain family 9, member A [Source:HGNC Symbol;Acc:HGNC:26705]
ENSCJAG00000021674	KNOWN_BY_PROJECTION	protein_coding	CLEC1A	chromosome:C_jacchus3.2.1:9:1:124281992:1	11161424	11188155	D	C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:HGNC:24355]
ENSCJAG00000013674	KNOWN	protein_coding	DIS3L2	chromosome:C_jacchus3.2.1:6:1:158406734:1	148396647	148793199	D	DIS3-like exonuclease 2 isoform 3 {ECO:0000313|EMBL:JAB48430.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025152}  [Source:UniProtKB/TrEMBL;Acc:F7C1K8]
ENSCJAG00000033591	NOVEL	protein_coding	ENSCJAG00000033591	chromosome:C_jacchus3.2.1:9:1:124281992:1	11151743	11152929	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052230}  [Source:UniProtKB/TrEMBL;Acc:F7ILF4]
ENSCJAG00000013669	KNOWN_BY_PROJECTION	protein_coding	NPPC	chromosome:C_jacchus3.2.1:6:1:158406734:1	148374925	148375633	R	natriuretic peptide C [Source:HGNC Symbol;Acc:HGNC:7941]
ENSCJAG00000013630	KNOWN	protein_coding	COPS7B	chromosome:C_jacchus3.2.1:6:1:158406734:1	148265702	148290113	D	COP9 signalosome complex subunit 7b {ECO:0000313|EMBL:JAB02061.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025141}  [Source:UniProtKB/TrEMBL;Acc:F7CGL1]
ENSCJAG00000021673	KNOWN	protein_coding	CLEC7A	chromosome:C_jacchus3.2.1:9:1:124281992:1	11135585	11148522	D	C-type lectin domain family 7 member A isoform b {ECO:0000313|EMBL:JAB15378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040352}  [Source:UniProtKB/TrEMBL;Acc:F7HQS4]
ENSCJAG00000013615	KNOWN	protein_coding	PDE6D	chromosome:C_jacchus3.2.1:6:1:158406734:1	148192059	148259716	R	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta {ECO:0000313|EMBL:JAB03543.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025057}  [Source:UniProtKB/TrEMBL;Acc:F6Z237]
ENSCJAG00000021672	KNOWN_BY_PROJECTION	protein_coding	OLR1	chromosome:C_jacchus3.2.1:9:1:124281992:1	11094109	11109056	D	oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]
ENSCJAG00000021671	KNOWN_BY_PROJECTION	protein_coding	TMEM52B	chromosome:C_jacchus3.2.1:9:1:124281992:1	11072824	11085905	R	transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
ENSCJAG00000013611	KNOWN	protein_coding	PTMA	chromosome:C_jacchus3.2.1:6:1:158406734:1	148169494	148174488	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047510}  [Source:UniProtKB/TrEMBL;Acc:F7I3Y2]
ENSCJAG00000013602	NOVEL	protein_coding	ENSCJAG00000013602	chromosome:C_jacchus3.2.1:6:1:158406734:1	148076976	148078017	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025022}  [Source:UniProtKB/TrEMBL;Acc:F7AJ73]
ENSCJAG00000013600	NOVEL	pseudogene	ENSCJAG00000013600	chromosome:C_jacchus3.2.1:6:1:158406734:1	148042796	148043982	D	<no descrition>
ENSCJAG00000021670	KNOWN	protein_coding	GABARAPL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	11034728	11044838	R	Gamma-aminobutyric acid receptor-associated protein-like 1 {ECO:0000313|EMBL:JAB02984.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040335}  [Source:UniProtKB/TrEMBL;Acc:F7HVH6]
ENSCJAG00000013596	KNOWN_BY_PROJECTION	protein_coding	NMUR1	chromosome:C_jacchus3.2.1:6:1:158406734:1	147959840	147965420	R	neuromedin U receptor 1 [Source:HGNC Symbol;Acc:HGNC:4518]
ENSCJAG00000013593	NOVEL	protein_coding	ENSCJAG00000013593	chromosome:C_jacchus3.2.1:6:1:158406734:1	147899526	147903269	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024991}  [Source:UniProtKB/TrEMBL;Acc:F6QHJ7]
ENSCJAG00000021669	KNOWN	protein_coding	CD94	chromosome:C_jacchus3.2.1:9:1:124281992:1	10939333	10947200	R	CD94 isoform 4 {ECO:0000313|EMBL:ABN45898.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051705}  [Source:UniProtKB/TrEMBL;Acc:A4GHD8]
ENSCJAG00000013538	KNOWN_BY_PROJECTION	protein_coding	NCL	chromosome:C_jacchus3.2.1:6:1:158406734:1	147899382	147910039	R	nucleolin [Source:HGNC Symbol;Acc:HGNC:7667]
ENSCJAG00000013533	KNOWN_BY_PROJECTION	protein_coding	B3GNT7	chromosome:C_jacchus3.2.1:6:1:158406734:1	147848340	147849558	D	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
ENSCJAG00000021667	KNOWN	protein_coding	NKG2D	chromosome:C_jacchus3.2.1:9:1:124281992:1	10893825	10910566	D	Callithrix jacchus killer cell lectin-like receptor subfamily K, member 1 (KLRK1), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001257249]
ENSCJAG00000037919	KNOWN_BY_PROJECTION	protein_coding	ARMC9	chromosome:C_jacchus3.2.1:6:1:158406734:1	147716819	147820428	D	armadillo repeat containing 9 [Source:HGNC Symbol;Acc:HGNC:20730]
ENSCJAG00000013503	KNOWN	protein_coding	HTR2B	chromosome:C_jacchus3.2.1:6:1:158406734:1	147550385	147567620	R	5-hydroxytryptamine receptor 2B {ECO:0000313|EMBL:JAB19547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024835}  [Source:UniProtKB/TrEMBL;Acc:F6U6Y0]
ENSCJAG00000021663	KNOWN	protein_coding	NKG2A	chromosome:C_jacchus3.2.1:9:1:124281992:1	10846679	10873734	D	Callithrix jacchus killer cell lectin-like receptor subfamily C, member 2 (KLRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001257247]
ENSCJAG00000021662	KNOWN	protein_coding	MAGOHB	chromosome:C_jacchus3.2.1:9:1:124281992:1	10747368	10754829	D	Protein mago nashi homolog 2 {ECO:0000313|EMBL:JAB24245.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040316}  [Source:UniProtKB/TrEMBL;Acc:F7I061]
ENSCJAG00000021661	KNOWN_BY_PROJECTION	protein_coding	STYK1	chromosome:C_jacchus3.2.1:9:1:124281992:1	10688968	10764130	D	serine/threonine/tyrosine kinase 1 [Source:HGNC Symbol;Acc:HGNC:18889]
ENSCJAG00000021660	NOVEL	protein_coding	ENSCJAG00000021660	chromosome:C_jacchus3.2.1:9:1:124281992:1	10647157	10672716	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040313}  [Source:UniProtKB/TrEMBL;Acc:F7I066]
ENSCJAG00000013379	KNOWN	protein_coding	PSMD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	147507102	147621380	D	26S proteasome non-ATPase regulatory subunit 1 isoform 1 {ECO:0000313|EMBL:JAB08837.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024817}  [Source:UniProtKB/TrEMBL;Acc:F6PMK9]
ENSCJAG00000021658	NOVEL	protein_coding	ENSCJAG00000021658	chromosome:C_jacchus3.2.1:9:1:124281992:1	10566600	10567704	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I087]
ENSCJAG00000021653	NOVEL	protein_coding	ENSCJAG00000021653	chromosome:C_jacchus3.2.1:9:1:124281992:1	10350661	10352109	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I093]
ENSCJAG00000013376	KNOWN_BY_PROJECTION	protein_coding	C2orf72	chromosome:C_jacchus3.2.1:6:1:158406734:1	147490005	147498583	D	chromosome 2 open reading frame 72 [Source:HGNC Symbol;Acc:HGNC:27418]
ENSCJAG00000013371	NOVEL	pseudogene	ENSCJAG00000013371	chromosome:C_jacchus3.2.1:6:1:158406734:1	147460307	147460560	R	<no descrition>
ENSCJAG00000013367	KNOWN_BY_PROJECTION	protein_coding	SPATA3	chromosome:C_jacchus3.2.1:6:1:158406734:1	147443115	147449582	D	spermatogenesis associated 3 [Source:HGNC Symbol;Acc:HGNC:17884]
ENSCJAG00000021647	NOVEL	protein_coding	ENSCJAG00000021647	chromosome:C_jacchus3.2.1:9:1:124281992:1	10008013	10009486	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040298}  [Source:UniProtKB/TrEMBL;Acc:F7IGV2]
ENSCJAG00000021648	NOVEL	protein_coding	ENSCJAG00000021648	chromosome:C_jacchus3.2.1:9:1:124281992:1	10137446	10179487	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040299}  [Source:UniProtKB/TrEMBL;Acc:F7IGV1]
ENSCJAG00000021646	KNOWN	protein_coding	ETV6	chromosome:C_jacchus3.2.1:9:1:124281992:1	9668984	9922045	R	Transcription factor ETV6 {ECO:0000313|EMBL:JAB09095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040297}  [Source:UniProtKB/TrEMBL;Acc:F7IGV3]
ENSCJAG00000021645	KNOWN_BY_PROJECTION	protein_coding	BCL2L14	chromosome:C_jacchus3.2.1:9:1:124281992:1	9458802	9479811	R	BCL2-like 14 (apoptosis facilitator) [Source:HGNC Symbol;Acc:HGNC:16657]
ENSCJAG00000013354	KNOWN	protein_coding	ITM2C	chromosome:C_jacchus3.2.1:6:1:158406734:1	147316137	147332015	D	Integral membrane protein 2C isoform 3 {ECO:0000313|EMBL:JAB04816.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046062}  [Source:UniProtKB/TrEMBL;Acc:F6ZBC6]
ENSCJAG00000013349	KNOWN	protein_coding	CAB39	chromosome:C_jacchus3.2.1:6:1:158406734:1	147161751	147265158	D	Calcium-binding protein 39 {ECO:0000313|EMBL:JAB08596.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024517}  [Source:UniProtKB/TrEMBL;Acc:F7GXU8]
ENSCJAG00000031667	NOVEL	protein_coding	ENSCJAG00000031667	chromosome:C_jacchus3.2.1:6:1:158406734:1	147055271	147057750	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045184}  [Source:UniProtKB/TrEMBL;Acc:F6RP27]
ENSCJAG00000014714	NOVEL	protein_coding	ENSCJAG00000014714	chromosome:C_jacchus3.2.1:6:1:158406734:1	147013512	147016023	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052485}  [Source:UniProtKB/TrEMBL;Acc:F7I024]
ENSCJAG00000021643	KNOWN	protein_coding	LRP6	chromosome:C_jacchus3.2.1:9:1:124281992:1	9285060	9434549	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040292}  [Source:UniProtKB/TrEMBL;Acc:F7IGV5]
ENSCJAG00000021640	KNOWN	protein_coding	LOH12CR1	chromosome:C_jacchus3.2.1:9:1:124281992:1	9100514	9199279	R	Loss of heterozygosity 12 chromosomal region 1 protein {ECO:0000313|EMBL:JAB03183.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040285}  [Source:UniProtKB/TrEMBL;Acc:F7IJ39]
ENSCJAG00000021642	KNOWN_BY_PROJECTION	protein_coding	MANSC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	9214179	9227111	D	MANSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25505]
ENSCJAG00000037284	NOVEL	protein_coding	ENSCJAG00000037284	chromosome:C_jacchus3.2.1:12:1:121768101:1	258324	287405	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021557}  [Source:UniProtKB/TrEMBL;Acc:F6TS11]
ENSCJAG00000011198	KNOWN	protein_coding	ING5	chromosome:C_jacchus3.2.1:6:1:158406734:1	158254296	158281004	D	Inhibitor of growth protein 5 {ECO:0000313|EMBL:JAB02809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020629}  [Source:UniProtKB/TrEMBL;Acc:F7ERU0]
ENSCJAG00000011730	NOVEL	pseudogene	ENSCJAG00000011730	chromosome:C_jacchus3.2.1:12:1:121768101:1	210964	211583	D	<no descrition>
ENSCJAG00000011210	KNOWN_BY_PROJECTION	protein_coding	ATG4B	chromosome:C_jacchus3.2.1:6:1:158406734:1	158202063	158225179	D	autophagy related 4B, cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:20790]
ENSCJAG00000000540	KNOWN_BY_PROJECTION	protein_coding	THAP4	chromosome:C_jacchus3.2.1:6:1:158406734:1	158138109	158184266	R	THAP domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23187]
ENSCJAG00000011671	KNOWN	protein_coding	HBQ1_2	chromosome:C_jacchus3.2.1:12:1:121768101:1	196924	197716	D	Hemoglobin subunit theta-1 {ECO:0000313|EMBL:JAB13799.1}; Theta 1 globin (Predicted) {ECO:0000313|EMBL:ABZ80338.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021435}  [Source:UniProtKB/TrEMBL;Acc:B0VX79]
ENSCJAG00000011674	KNOWN_BY_PROJECTION	protein_coding	LUC7L	chromosome:C_jacchus3.2.1:12:1:121768101:1	205254	234054	R	LUC7-like (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:6723]
ENSCJAG00000011639	NOVEL	protein_coding	HBM	chromosome:C_jacchus3.2.1:12:1:121768101:1	181486	182271	D	Hemoglobin mu chain (Predicted) {ECO:0000313|EMBL:ABZ80336.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021383}  [Source:UniProtKB/TrEMBL;Acc:B0VX77]
ENSCJAG00000000544	KNOWN	protein_coding	BOK	chromosome:C_jacchus3.2.1:6:1:158406734:1	158117403	158129878	D	Bcl-2-related ovarian killer protein {ECO:0000313|EMBL:JAB06051.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000927}  [Source:UniProtKB/TrEMBL;Acc:F6SBR3]
ENSCJAG00000011203	KNOWN_BY_PROJECTION	protein_coding	DTYMK	chromosome:C_jacchus3.2.1:6:1:158406734:1	158049568	158241360	R	deoxythymidylate kinase (thymidylate kinase) [Source:HGNC Symbol;Acc:HGNC:3061]
ENSCJAG00000008004	KNOWN	protein_coding	ING4	chromosome:C_jacchus3.2.1:9:1:124281992:1	18418280	18431197	R	Inhibitor of growth protein 4 isoform 9 {ECO:0000313|EMBL:JAB03046.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014925}  [Source:UniProtKB/TrEMBL;Acc:F7HUX9]
ENSCJAG00000035277	NOVEL	pseudogene	ENSCJAG00000035277	chromosome:C_jacchus3.2.1:12:1:121768101:1	125445	126295	D	<no descrition>
ENSCJAG00000011598	KNOWN	protein_coding	MARE	chromosome:C_jacchus3.2.1:12:1:121768101:1	101670	160720	R	Alpha globin regulatory element containing protein (Predicted) {ECO:0000313|EMBL:ABZ80334.1}; Nitrogen permease regulator 3-like protein isoform 1 {ECO:0000313|EMBL:JAB05099.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021344}  [Source:UniProtKB/TrEMBL;Acc:B0VX74]
ENSCJAG00000011582	KNOWN_BY_PROJECTION	protein_coding	MPG	chromosome:C_jacchus3.2.1:12:1:121768101:1	96343	103146	D	N-methylpurine-DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]
ENSCJAG00000006122	KNOWN	protein_coding	SEPT2	chromosome:C_jacchus3.2.1:6:1:158406734:1	157851700	157892215	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011280}  [Source:UniProtKB/TrEMBL;Acc:F7IKN1]
ENSCJAG00000008114	KNOWN_BY_PROJECTION	protein_coding	CHD4	chromosome:C_jacchus3.2.1:9:1:124281992:1	18338862	18371332	R	chromodomain helicase DNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:1919]
ENSCJAG00000011577	KNOWN_BY_PROJECTION	protein_coding	RHBDF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	75007	95667	R	rhomboid 5 homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:20561]
ENSCJAG00000011572	NOVEL	protein_coding	C16ORF33	chromosome:C_jacchus3.2.1:12:1:121768101:1	69676	73532	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021255}  [Source:UniProtKB/TrEMBL;Acc:F6R2U2]
ENSCJAG00000011568	KNOWN	protein_coding	POLR3K	chromosome:C_jacchus3.2.1:12:1:121768101:1	61865	69303	R	DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586, ECO:0000256|RuleBase:RU004351}  [Source:UniProtKB/TrEMBL;Acc:B0VX71]
ENSCJAG00000008179	KNOWN	protein_coding	NOP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	18323641	18337335	R	Putative ribosomal RNA methyltransferase NOP2 isoform 1 {ECO:0000313|EMBL:JAB40367.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015198}  [Source:UniProtKB/TrEMBL;Acc:F7H5C4]
ENSCJAG00000007561	KNOWN_BY_PROJECTION	protein_coding	NCAPD2	chromosome:C_jacchus3.2.1:9:1:124281992:1	18273660	18297397	D	non-SMC condensin I complex, subunit D2 [Source:HGNC Symbol;Acc:HGNC:24305]
ENSCJAG00000006275	KNOWN_BY_PROJECTION	protein_coding	PPP1R7	chromosome:C_jacchus3.2.1:6:1:158406734:1	157687120	157719109	D	protein phosphatase 1, regulatory subunit 7 [Source:HGNC Symbol;Acc:HGNC:9295]
ENSCJAG00000000734	KNOWN	protein_coding	VAMP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	18219637	18228236	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001261}; Vesicle-associated membrane protein 1 isoform 1 {ECO:0000313|EMBL:JAB17394.1}  [Source:UniProtKB/TrEMBL;Acc:F6YI66]
ENSCJAG00000000722	KNOWN_BY_PROJECTION	protein_coding	TAPBPL	chromosome:C_jacchus3.2.1:9:1:124281992:1	18209314	18219715	D	TAP binding protein-like [Source:HGNC Symbol;Acc:HGNC:30683]
ENSCJAG00000000719	KNOWN_BY_PROJECTION	protein_coding	CD27	chromosome:C_jacchus3.2.1:9:1:124281992:1	18190956	18217967	D	CD27 molecule [Source:HGNC Symbol;Acc:HGNC:11922]
ENSCJAG00000006346	KNOWN_BY_PROJECTION	protein_coding	MTERF4	chromosome:C_jacchus3.2.1:6:1:158406734:1	157627141	157633657	R	mitochondrial transcription termination factor 4 [Source:HGNC Symbol;Acc:HGNC:28785]
ENSCJAG00000000706	KNOWN_BY_PROJECTION	protein_coding	LTBR	chromosome:C_jacchus3.2.1:9:1:124281992:1	18130595	18137494	D	lymphotoxin beta receptor (TNFR superfamily, member 3) [Source:HGNC Symbol;Acc:HGNC:6718]
ENSCJAG00000006403	KNOWN	protein_coding	AGXT	chromosome:C_jacchus3.2.1:6:1:158406734:1	157400078	157411554	D	Serine--pyruvate aminotransferase, mitochondrial  [Source:UniProtKB/Swiss-Prot;Acc:P31029]
ENSCJAG00000000689	KNOWN_BY_PROJECTION	protein_coding	SCNN1A	chromosome:C_jacchus3.2.1:9:1:124281992:1	18088720	18119958	R	sodium channel, non voltage gated 1 alpha subunit [Source:HGNC Symbol;Acc:HGNC:10599]
ENSCJAG00000031983	NOVEL	pseudogene	ENSCJAG00000031983	chromosome:C_jacchus3.2.1:9:1:124281992:1	17915162	17915243	R	<no descrition>
ENSCJAG00000009918	NOVEL	protein_coding	ENSCJAG00000009918	chromosome:C_jacchus3.2.1:9:1:124281992:1	17916064	17925503	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018212}  [Source:UniProtKB/TrEMBL;Acc:F7H1D6]
ENSCJAG00000006565	KNOWN_BY_PROJECTION	protein_coding	CAPN10	chromosome:C_jacchus3.2.1:6:1:158406734:1	157111231	157123952	D	calpain 10 [Source:HGNC Symbol;Acc:HGNC:1477]
ENSCJAG00000002285	NOVEL	pseudogene	ENSCJAG00000002285	chromosome:C_jacchus3.2.1:9:1:124281992:1	17894763	17894910	R	<no descrition>
ENSCJAG00000021910	NOVEL	protein_coding	ENSCJAG00000021910	chromosome:C_jacchus3.2.1:19:1:49578535:1	36140263	36141129	D	60S ribosomal protein L6 {ECO:0000256|RuleBase:RU000662}  [Source:UniProtKB/TrEMBL;Acc:F7IL95]
ENSCJAG00000021808	NOVEL	protein_coding	ENSCJAG00000021808	chromosome:C_jacchus3.2.1:3:1:190850796:1	33383125	33384607	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040509}  [Source:UniProtKB/TrEMBL;Acc:F7HV97]
ENSCJAG00000021909	NOVEL	protein_coding	ENSCJAG00000021909	chromosome:C_jacchus3.2.1:19:1:49578535:1	34309380	34309856	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040593}  [Source:UniProtKB/TrEMBL;Acc:F7INH9]
ENSCJAG00000034941	NOVEL	protein_coding	ENSCJAG00000034941	chromosome:C_jacchus3.2.1:3:1:190850796:1	26532307	26533677	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041899}  [Source:UniProtKB/TrEMBL;Acc:F7HF04]
ENSCJAG00000021889	NOVEL	protein_coding	ENSCJAG00000021889	chromosome:C_jacchus3.2.1:19:1:49578535:1	33814261	33814641	R	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7INK0]
ENSCJAG00000021908	KNOWN_BY_PROJECTION	protein_coding	HIST3H2BB	chromosome:C_jacchus3.2.1:19:1:49578535:1	33808321	33808772	D	histone cluster 3, H2bb [Source:HGNC Symbol;Acc:HGNC:20514]
ENSCJAG00000001647	NOVEL	protein_coding	ENSCJAG00000001647	scaffold:C_jacchus3.2.1:GL286468.1:1:194428:1	172516	194151	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030390}  [Source:UniProtKB/TrEMBL;Acc:H9KX79]
ENSCJAG00000010753	NOVEL	protein_coding	ENSCJAG00000010753	scaffold:C_jacchus3.2.1:ACFV01188512.1:1:8611:1	2613	6425	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019829}  [Source:UniProtKB/TrEMBL;Acc:H9KWP7]
ENSCJAG00000007120	KNOWN	protein_coding	ENSCJAG00000007120	chromosome:C_jacchus3.2.1:9:1:124281992:1	18825521	18829868	D	Ribosomal RNA small subunit methyltransferase NEP1 {ECO:0000313|EMBL:JAB23963.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013249}  [Source:UniProtKB/TrEMBL;Acc:F6YHU5]
ENSCJAG00000021907	KNOWN	protein_coding	HIST3H2A	chromosome:C_jacchus3.2.1:19:1:49578535:1	33807579	33808075	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7INI1]
ENSCJAG00000014549	KNOWN_BY_PROJECTION	protein_coding	OR2B11	chromosome:C_jacchus3.2.1:19:1:49578535:1	32784895	32785938	D	olfactory receptor, family 2, subfamily B, member 11 [Source:HGNC Symbol;Acc:HGNC:31249]
ENSCJAG00000008129	NOVEL	protein_coding	ENSCJAG00000008129	scaffold:C_jacchus3.2.1:GL285923.1:1:140007:1	125117	130417	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015042}  [Source:UniProtKB/TrEMBL;Acc:H9KWH7]
ENSCJAG00000034874	NOVEL	pseudogene	ENSCJAG00000034874	scaffold:C_jacchus3.2.1:GL285523.1:1:28413:1	17298	17674	D	<no descrition>
ENSCJAG00000018603	KNOWN_BY_PROJECTION	protein_coding	CDC123	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	143010	158054	R	cell division cycle 123 [Source:HGNC Symbol;Acc:HGNC:16827]
ENSCJAG00000010890	NOVEL	protein_coding	ENSCJAG00000010890	scaffold:C_jacchus3.2.1:GL285001.1:1:29047:1	5664	7090	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020063}  [Source:UniProtKB/TrEMBL;Acc:H9KWQ9]
ENSCJAG00000022636	NOVEL	protein_coding	ENSCJAG00000022636	chromosome:C_jacchus3.2.1:19:1:49578535:1	32464928	32465977	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAV6]
ENSCJAG00000037545	KNOWN_BY_PROJECTION	protein_coding	OR2T6	chromosome:C_jacchus3.2.1:19:1:49578535:1	32327935	32328858	R	olfactory receptor, family 2, subfamily T, member 6 [Source:HGNC Symbol;Acc:HGNC:15018]
ENSCJAG00000034927	NOVEL	protein_coding	ENSCJAG00000034927	scaffold:C_jacchus3.2.1:GL286774.1:1:10142:1	9361	9813	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050175}  [Source:UniProtKB/TrEMBL;Acc:H9KYG2]
ENSCJAG00000013290	KNOWN_BY_PROJECTION	protein_coding	TMEM86A	scaffold:C_jacchus3.2.1:GL286394.1:1:12031:1	3002	5199	D	transmembrane protein 86A [Source:HGNC Symbol;Acc:HGNC:26890]
ENSCJAG00000034656	NOVEL	protein_coding	ENSCJAG00000034656	chromosome:C_jacchus3.2.1:19:1:49578535:1	32281880	32282879	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7GB81]
ENSCJAG00000008926	KNOWN_BY_PROJECTION	protein_coding	OR2T10	chromosome:C_jacchus3.2.1:19:1:49578535:1	32263348	32264398	R	olfactory receptor, family 2, subfamily T, member 10 [Source:HGNC Symbol;Acc:HGNC:19573]
ENSCJAG00000034680	NOVEL	protein_coding	ENSCJAG00000034680	scaffold:C_jacchus3.2.1:GL288652.1:1:9837:1	6243	7110	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045754}  [Source:UniProtKB/TrEMBL;Acc:H9KY55]
ENSCJAG00000034101	NOVEL	protein_coding	ENSCJAG00000034101	scaffold:C_jacchus3.2.1:GL288248.1:1:17566:1	10107	11227	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046562}  [Source:UniProtKB/TrEMBL;Acc:H9KY70]
ENSCJAG00000023321	KNOWN_BY_PROJECTION	protein_coding	ATP5G2	chromosome:C_jacchus3.2.1:19:1:49578535:1	31247999	31248599	R	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:HGNC:842]
ENSCJAG00000012992	NOVEL	protein_coding	ENSCJAG00000012992	scaffold:C_jacchus3.2.1:GL286253.1:1:82793:1	56775	79209	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023831}  [Source:UniProtKB/TrEMBL;Acc:H9KWY0]
ENSCJAG00000023404	NOVEL	processed_pseudogene	ENSCJAG00000023404	chromosome:C_jacchus3.2.1:2:1:204313951:1	160432539	160434068	R	<no descrition>
ENSCJAG00000038098	NOVEL	processed_pseudogene	ENSCJAG00000038098	chromosome:C_jacchus3.2.1:2:1:204313951:1	159813138	159813617	D	<no descrition>
ENSCJAG00000021847	NOVEL	processed_pseudogene	ENSCJAG00000021847	chromosome:C_jacchus3.2.1:2:1:204313951:1	158327871	158328377	D	<no descrition>
ENSCJAG00000035569	NOVEL	pseudogene	ENSCJAG00000035569	scaffold:C_jacchus3.2.1:ACFV01195265.1:1:3765:1	84	1482	D	<no descrition>
ENSCJAG00000018335	NOVEL	processed_pseudogene	ENSCJAG00000018335	chromosome:C_jacchus3.2.1:2:1:204313951:1	96732221	96732697	R	<no descrition>
ENSCJAG00000031969	NOVEL	processed_pseudogene	ENSCJAG00000031969	chromosome:C_jacchus3.2.1:2:1:204313951:1	72890289	72890750	D	<no descrition>
ENSCJAG00000022778	NOVEL	processed_pseudogene	ENSCJAG00000022778	chromosome:C_jacchus3.2.1:2:1:204313951:1	63843057	63844100	D	<no descrition>
ENSCJAG00000013323	KNOWN_BY_PROJECTION	protein_coding	CACNA1H	chromosome:C_jacchus3.2.1:12:1:121768101:1	1167888	1242209	D	calcium channel, voltage-dependent, T type, alpha 1H subunit [Source:HGNC Symbol;Acc:HGNC:1395]
ENSCJAG00000023442	NOVEL	protein_coding	ENSCJAG00000023442	chromosome:C_jacchus3.2.1:2:1:204313951:1	163854490	163854843	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041935}  [Source:UniProtKB/TrEMBL;Acc:F7GU73]
ENSCJAG00000031627	NOVEL	protein_coding	ENSCJAG00000031627	chromosome:C_jacchus3.2.1:12:1:121768101:1	1083571	1083895	D	<no descrition>
ENSCJAG00000023401	NOVEL	protein_coding	ENSCJAG00000023401	chromosome:C_jacchus3.2.1:2:1:204313951:1	160034781	160035095	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041897}  [Source:UniProtKB/TrEMBL;Acc:F7HF08]
ENSCJAG00000018489	KNOWN	protein_coding	ZMYND11	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	775524	834290	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034389}  [Source:UniProtKB/TrEMBL;Acc:H9KXD9]
ENSCJAG00000023067	KNOWN_BY_PROJECTION	protein_coding	ACTBL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	150155065	150157818	D	actin, beta-like 2 [Source:HGNC Symbol;Acc:HGNC:17780]
ENSCJAG00000023072	KNOWN	protein_coding	ENSCJAG00000023072	chromosome:C_jacchus3.2.1:2:1:204313951:1	142069426	142070231	D	Actin-related protein 2/3 complex subunit 3 {ECO:0000256|PIRNR:PIRNR016315}  [Source:UniProtKB/TrEMBL;Acc:F7H8T3]
ENSCJAG00000007137	KNOWN	protein_coding	PHB2	chromosome:C_jacchus3.2.1:9:1:124281992:1	18820053	18825280	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013349}  [Source:UniProtKB/TrEMBL;Acc:F7BJ23]
ENSCJAG00000022292	KNOWN_BY_PROJECTION	protein_coding	SPZ1	chromosome:C_jacchus3.2.1:2:1:204313951:1	127880140	127881853	R	spermatogenic leucine zipper 1 [Source:HGNC Symbol;Acc:HGNC:30721]
ENSCJAG00000022648	NOVEL	protein_coding	ENSCJAG00000022648	chromosome:C_jacchus3.2.1:2:1:204313951:1	105473332	105473628	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041247}  [Source:UniProtKB/TrEMBL;Acc:F7HAU1]
ENSCJAG00000022647	NOVEL	protein_coding	ENSCJAG00000022647	chromosome:C_jacchus3.2.1:2:1:204313951:1	104352145	104352929	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041246}  [Source:UniProtKB/TrEMBL;Acc:F7HAU3]
ENSCJAG00000002684	KNOWN	protein_coding	SOX8	chromosome:C_jacchus3.2.1:12:1:121768101:1	827578	1303882	D	Transcription factor SOX-8 {ECO:0000313|EMBL:JAB13289.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004884}  [Source:UniProtKB/TrEMBL;Acc:F6WQQ2]
ENSCJAG00000007188	KNOWN	protein_coding	PTPN6	chromosome:C_jacchus3.2.1:9:1:124281992:1	18798482	18815781	D	Tyrosine-protein phosphatase non-receptor type {ECO:0000256|PIRNR:PIRNR000929}  [Source:UniProtKB/TrEMBL;Acc:F6ZXP5]
ENSCJAG00000009343	NOVEL	protein_coding	ENSCJAG00000009343	scaffold:C_jacchus3.2.1:GL285147.1:1:18071:1	1995	10279	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017109}  [Source:UniProtKB/TrEMBL;Acc:H9KWL1]
ENSCJAG00000007272	KNOWN	protein_coding	C12ORF57	chromosome:C_jacchus3.2.1:9:1:124281992:1	18795330	18797649	D	Protein C10 {ECO:0000313|EMBL:JAB04174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013544}  [Source:UniProtKB/TrEMBL;Acc:F6ZF79]
ENSCJAG00000012292	KNOWN_BY_PROJECTION	protein_coding	GNG13	chromosome:C_jacchus3.2.1:12:1:121768101:1	820630	823051	R	guanine nucleotide binding protein (G protein), gamma 13 [Source:HGNC Symbol;Acc:HGNC:14131]
ENSCJAG00000005250	NOVEL	protein_coding	ENSCJAG00000005250	scaffold:C_jacchus3.2.1:ACFV01180261.1:1:15829:1	11532	12411	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009585}  [Source:UniProtKB/TrEMBL;Acc:H9KW60]
ENSCJAG00000013841	NOVEL	pseudogene	ENSCJAG00000013841	scaffold:C_jacchus3.2.1:ACFV01174997.1:1:29779:1	26256	29226	R	<no descrition>
ENSCJAG00000013836	NOVEL	protein_coding	ENSCJAG00000013836	scaffold:C_jacchus3.2.1:ACFV01174997.1:1:29779:1	20762	21645	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025439}  [Source:UniProtKB/TrEMBL;Acc:H9KX20]
ENSCJAG00000012262	KNOWN_BY_PROJECTION	protein_coding	CHTF18	chromosome:C_jacchus3.2.1:12:1:121768101:1	807526	820428	D	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18435]
ENSCJAG00000031556	NOVEL	pseudogene	ENSCJAG00000031556	scaffold:C_jacchus3.2.1:ACFV01199792.1:1:2072:1	977	2070	R	<no descrition>
ENSCJAG00000034259	NOVEL	protein_coding	ENSCJAG00000034259	scaffold:C_jacchus3.2.1:ACFV01181440.1:1:8374:1	4768	7390	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050239}  [Source:UniProtKB/TrEMBL;Acc:H9KYG4]
ENSCJAG00000022550	NOVEL	protein_coding	ENSCJAG00000022550	chromosome:C_jacchus3.2.1:2:1:204313951:1	88100045	88101597	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047212}  [Source:UniProtKB/TrEMBL;Acc:F7IKM4]
ENSCJAG00000023029	NOVEL	protein_coding	ENSCJAG00000023029	chromosome:C_jacchus3.2.1:2:1:204313951:1	71123778	71124614	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041575}  [Source:UniProtKB/TrEMBL;Acc:F7FEL7]
ENSCJAG00000022278	NOVEL	protein_coding	ENSCJAG00000022278	chromosome:C_jacchus3.2.1:2:1:204313951:1	69432515	69432975	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040925}  [Source:UniProtKB/TrEMBL;Acc:F7HZR7]
ENSCJAG00000007276	KNOWN_BY_PROJECTION	protein_coding	ATN1	chromosome:C_jacchus3.2.1:9:1:124281992:1	18785317	18793888	D	atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
ENSCJAG00000031457	NOVEL	processed_pseudogene	ENSCJAG00000031457	chromosome:C_jacchus3.2.1:3:1:190850796:1	151176165	151176539	D	<no descrition>
ENSCJAG00000012236	KNOWN_BY_PROJECTION	protein_coding	MSLNL	chromosome:C_jacchus3.2.1:12:1:121768101:1	791549	800663	R	mesothelin-like [Source:HGNC Symbol;Acc:HGNC:14170]
ENSCJAG00000031141	NOVEL	processed_pseudogene	ENSCJAG00000031141	chromosome:C_jacchus3.2.1:3:1:190850796:1	148879658	148881451	D	<no descrition>
ENSCJAG00000012430	NOVEL	protein_coding	ENSCJAG00000012430	chromosome:C_jacchus3.2.1:X:1:142054208:1	46461555	46461812	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022749}  [Source:UniProtKB/TrEMBL;Acc:F7ICZ3]
ENSCJAG00000021873	NOVEL	processed_pseudogene	ENSCJAG00000021873	chromosome:C_jacchus3.2.1:3:1:190850796:1	146993716	146994210	R	<no descrition>
ENSCJAG00000038127	NOVEL	protein_coding	ENSCJAG00000038127	chromosome:C_jacchus3.2.1:X:1:142054208:1	45844953	45845054	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052084}  [Source:UniProtKB/TrEMBL;Acc:F7IEM8]
ENSCJAG00000022775	NOVEL	protein_coding	ENSCJAG00000022775	chromosome:C_jacchus3.2.1:X:1:142054208:1	45369983	45371533	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041358}  [Source:UniProtKB/TrEMBL;Acc:F7F273]
ENSCJAG00000022805	NOVEL	protein_coding	ENSCJAG00000022805	chromosome:C_jacchus3.2.1:X:1:142054208:1	43447829	43448314	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041386}  [Source:UniProtKB/TrEMBL;Acc:F7EAX6]
ENSCJAG00000012194	KNOWN_BY_PROJECTION	protein_coding	MSLN	chromosome:C_jacchus3.2.1:12:1:121768101:1	781167	789859	D	mesothelin [Source:HGNC Symbol;Acc:HGNC:7371]
ENSCJAG00000022639	NOVEL	protein_coding	ENSCJAG00000022639	chromosome:C_jacchus3.2.1:X:1:142054208:1	40301730	40302212	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041238}  [Source:UniProtKB/TrEMBL;Acc:F7HAV1]
ENSCJAG00000022175	KNOWN	protein_coding	MID1IP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	37589474	37591310	D	Mid1-interacting protein 1 {ECO:0000313|EMBL:JAB18849.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040831}  [Source:UniProtKB/TrEMBL;Acc:F7IE07]
ENSCJAG00000012185	KNOWN_BY_PROJECTION	protein_coding	NARFL	chromosome:C_jacchus3.2.1:12:1:121768101:1	754567	761774	R	nuclear prelamin A recognition factor-like [Source:HGNC Symbol;Acc:HGNC:14179]
ENSCJAG00000003905	NOVEL	protein_coding	ENSCJAG00000003905	scaffold:C_jacchus3.2.1:ACFV01178497.1:1:27665:1	8869	9791	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007105}  [Source:UniProtKB/TrEMBL;Acc:H9KW28]
ENSCJAG00000022338	NOVEL	protein_coding	ENSCJAG00000022338	chromosome:C_jacchus3.2.1:X:1:142054208:1	36736954	36737298	D	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7IT39]
ENSCJAG00000032477	NOVEL	protein_coding	ENSCJAG00000032477	scaffold:C_jacchus3.2.1:GL286430.1:1:8166:1	3683	5386	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044779}  [Source:UniProtKB/TrEMBL;Acc:H9KY32]
ENSCJAG00000033037	NOVEL	protein_coding	ENSCJAG00000033037	scaffold:C_jacchus3.2.1:ACFV01178497.1:1:27665:1	1862	3108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050517}  [Source:UniProtKB/TrEMBL;Acc:H9KYH3]
ENSCJAG00000022337	KNOWN_BY_PROJECTION	protein_coding	HYPM	chromosome:C_jacchus3.2.1:X:1:142054208:1	36714751	36715249	D	huntingtin interacting protein M [Source:HGNC Symbol;Acc:HGNC:18417]
ENSCJAG00000007550	NOVEL	pseudogene	ENSCJAG00000007550	scaffold:C_jacchus3.2.1:ACFV01178456.1:1:25096:1	20067	20503	R	<no descrition>
ENSCJAG00000013282	NOVEL	protein_coding	ENSCJAG00000013282	chromosome:C_jacchus3.2.1:12:1:121768101:1	1249701	1308402	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024426}  [Source:UniProtKB/TrEMBL;Acc:F7F9V1]
ENSCJAG00000008829	KNOWN_BY_PROJECTION	protein_coding	TNR	chromosome:C_jacchus3.2.1:18:1:47448759:1	31516187	31700244	D	tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
ENSCJAG00000001619	NOVEL	protein_coding	ENSCJAG00000001619	scaffold:C_jacchus3.2.1:GL286219.1:1:94819:1	47087	49007	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002879}  [Source:UniProtKB/TrEMBL;Acc:H9KVP5]
ENSCJAG00000009001	NOVEL	protein_coding	ENSCJAG00000009001	scaffold:C_jacchus3.2.1:ACFV01177819.1:1:18744:1	9378	11803	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016469}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ4]
ENSCJAG00000032219	NOVEL	protein_coding	ENSCJAG00000032219	chromosome:C_jacchus3.2.1:Y:1:2853901:1	342818	343609	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044254}  [Source:UniProtKB/TrEMBL;Acc:F7DK81]
ENSCJAG00000015432	NOVEL	pseudogene	ENSCJAG00000015432	chromosome:C_jacchus3.2.1:Y:1:2853901:1	195441	196082	R	<no descrition>
ENSCJAG00000033621	NOVEL	protein_coding	ENSCJAG00000033621	scaffold:C_jacchus3.2.1:GL284838.1:1:27919:1	1925	2681	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048392}  [Source:UniProtKB/TrEMBL;Acc:H9KYB9]
ENSCJAG00000019687	KNOWN	protein_coding	DNASE1	chromosome:C_jacchus3.2.1:12:1:121768101:1	3675074	3700196	D	Deoxyribonuclease {ECO:0000256|PIRNR:PIRNR000988}  [Source:UniProtKB/TrEMBL;Acc:F7F9B5]
ENSCJAG00000010232	KNOWN	protein_coding	SLC19A2	chromosome:C_jacchus3.2.1:18:1:47448759:1	36985508	37006720	D	Thiamine transporter 1 {ECO:0000313|EMBL:JAB04316.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018867}  [Source:UniProtKB/TrEMBL;Acc:F7HG40]
ENSCJAG00000010574	NOVEL	protein_coding	ENSCJAG00000010574	chromosome:C_jacchus3.2.1:8:1:128169293:1	116113721	116114307	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047222}  [Source:UniProtKB/TrEMBL;Acc:F7IKI9]
ENSCJAG00000019684	KNOWN_BY_PROJECTION	protein_coding	SLX4	chromosome:C_jacchus3.2.1:12:1:121768101:1	3598517	3625870	R	SLX4 structure-specific endonuclease subunit [Source:HGNC Symbol;Acc:HGNC:23845]
ENSCJAG00000022545	NOVEL	protein_coding	ENSCJAG00000022545	chromosome:C_jacchus3.2.1:8:1:128169293:1	114930615	114931022	D	<no descrition>
ENSCJAG00000010231	NOVEL	protein_coding	ENSCJAG00000010231	chromosome:C_jacchus3.2.1:18:1:47448759:1	36984941	36985182	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018831}  [Source:UniProtKB/TrEMBL;Acc:F7CXS0]
ENSCJAG00000033909	NOVEL	protein_coding	ENSCJAG00000033909	chromosome:C_jacchus3.2.1:8:1:128169293:1	114653357	114653707	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045383}  [Source:UniProtKB/TrEMBL;Acc:F6SJ60]
ENSCJAG00000000340	NOVEL	protein_coding	ENSCJAG00000000340	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	52584	55020	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000567}  [Source:UniProtKB/TrEMBL;Acc:H9KVK3]
ENSCJAG00000020642	NOVEL	protein_coding	ENSCJAG00000020642	chromosome:C_jacchus3.2.1:8:1:128169293:1	114649627	114649974	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038372}  [Source:UniProtKB/TrEMBL;Acc:F7I4N5]
ENSCJAG00000013077	KNOWN_BY_PROJECTION	protein_coding	SCAF11	chromosome:C_jacchus3.2.1:9:1:124281992:1	25103367	25183018	D	SR-related CTD-associated factor 11 [Source:HGNC Symbol;Acc:HGNC:10784]
ENSCJAG00000033420	NOVEL	protein_coding	ENSCJAG00000033420	chromosome:C_jacchus3.2.1:8:1:128169293:1	111013694	111013807	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042390}  [Source:UniProtKB/TrEMBL;Acc:F6UJ91]
ENSCJAG00000022780	NOVEL	protein_coding	ENSCJAG00000022780	chromosome:C_jacchus3.2.1:8:1:128169293:1	111072144	111072500	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041363}  [Source:UniProtKB/TrEMBL;Acc:F7ENY2]
ENSCJAG00000022782	NOVEL	protein_coding	ENSCJAG00000022782	chromosome:C_jacchus3.2.1:8:1:128169293:1	110793977	110794459	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041365}  [Source:UniProtKB/TrEMBL;Acc:F7ENW7]
ENSCJAG00000022783	NOVEL	protein_coding	ENSCJAG00000022783	chromosome:C_jacchus3.2.1:8:1:128169293:1	110232809	110233063	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041366}  [Source:UniProtKB/TrEMBL;Acc:F7ENW3]
ENSCJAG00000022785	NOVEL	protein_coding	ENSCJAG00000022785	chromosome:C_jacchus3.2.1:8:1:128169293:1	104414682	104415777	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041368}  [Source:UniProtKB/TrEMBL;Acc:F7ENU2]
ENSCJAG00000022788	KNOWN_BY_PROJECTION	protein_coding	TAS2R5	chromosome:C_jacchus3.2.1:8:1:128169293:1	104280355	104281503	R	taste receptor, type 2, member 5 [Source:HGNC Symbol;Acc:HGNC:14912]
ENSCJAG00000013686	NOVEL	protein_coding	TAS2R38	chromosome:C_jacchus3.2.1:8:1:128169293:1	104156002	104157151	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7BJT1]
ENSCJAG00000021983	KNOWN_BY_PROJECTION	protein_coding	OR6V1	chromosome:C_jacchus3.2.1:8:1:128169293:1	103125982	103127008	R	olfactory receptor, family 6, subfamily V, member 1 [Source:HGNC Symbol;Acc:HGNC:15090]
ENSCJAG00000021988	KNOWN	protein_coding	OR6B1	chromosome:C_jacchus3.2.1:8:1:128169293:1	102176415	102177461	R	Callithrix jacchus olfactory receptor, family 6, subfamily B, member 1 (OR6B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001270932]
ENSCJAG00000021986	KNOWN_BY_PROJECTION	protein_coding	TAS2R41	chromosome:C_jacchus3.2.1:8:1:128169293:1	102681739	102682662	R	taste receptor, type 2, member 41 [Source:HGNC Symbol;Acc:HGNC:18883]
ENSCJAG00000019666	KNOWN_BY_PROJECTION	protein_coding	NLRC3	chromosome:C_jacchus3.2.1:12:1:121768101:1	3560115	3584669	R	NLR family, CARD domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29889]
ENSCJAG00000035195	NOVEL	protein_coding	ENSCJAG00000035195	chromosome:C_jacchus3.2.1:8:1:128169293:1	98720009	98720200	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050466}  [Source:UniProtKB/TrEMBL;Acc:F7H8S9]
ENSCJAG00000010538	NOVEL	protein_coding	ENSCJAG00000010538	scaffold:C_jacchus3.2.1:GL286402.1:1:15771:1	7572	8973	R	Annexin {ECO:0000256|RuleBase:RU003540}  [Source:UniProtKB/TrEMBL;Acc:H9KWN7]
ENSCJAG00000037672	NOVEL	protein_coding	ENSCJAG00000037672	chromosome:C_jacchus3.2.1:8:1:128169293:1	97160719	97161237	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052106}  [Source:UniProtKB/TrEMBL;Acc:F7I2S8]
ENSCJAG00000021991	NOVEL	protein_coding	ENSCJAG00000021991	chromosome:C_jacchus3.2.1:8:1:128169293:1	97016073	97017415	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040670}  [Source:UniProtKB/TrEMBL;Acc:F7I706]
ENSCJAG00000022001	NOVEL	processed_pseudogene	ENSCJAG00000022001	chromosome:C_jacchus3.2.1:11:1:130397257:1	72695595	72695786	D	<no descrition>
ENSCJAG00000005308	NOVEL	protein_coding	ENSCJAG00000005308	scaffold:C_jacchus3.2.1:GL286215.1:1:103782:1	97689	98719	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052482}  [Source:UniProtKB/TrEMBL;Acc:H9KYN0]
ENSCJAG00000021790	NOVEL	protein_coding	ENSCJAG00000021790	chromosome:C_jacchus3.2.1:8:1:128169293:1	95384403	95384804	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040495}  [Source:UniProtKB/TrEMBL;Acc:F7I045]
ENSCJAG00000032328	NOVEL	protein_coding	ENSCJAG00000032328	scaffold:C_jacchus3.2.1:GL286215.1:1:103782:1	53578	54673	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052490}  [Source:UniProtKB/TrEMBL;Acc:H9KYN1]
ENSCJAG00000023208	NOVEL	protein_coding	ENSCJAG00000023208	chromosome:C_jacchus3.2.1:8:1:128169293:1	89287219	89287563	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041722}  [Source:UniProtKB/TrEMBL;Acc:F7GPD3]
ENSCJAG00000022993	NOVEL	protein_coding	ENSCJAG00000022993	chromosome:C_jacchus3.2.1:8:1:128169293:1	81988770	81989272	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041548}  [Source:UniProtKB/TrEMBL;Acc:F7FTW4]
ENSCJAG00000009100	NOVEL	protein_coding	ENSCJAG00000009100	chromosome:C_jacchus3.2.1:11:1:130397257:1	112641306	112642327	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7ICU4]
ENSCJAG00000022681	NOVEL	protein_coding	ENSCJAG00000022681	chromosome:C_jacchus3.2.1:11:1:130397257:1	112603817	112604746	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041274}  [Source:UniProtKB/TrEMBL;Acc:F7H5T3]
ENSCJAG00000022989	NOVEL	protein_coding	ENSCJAG00000022989	chromosome:C_jacchus3.2.1:8:1:128169293:1	74452269	74452535	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041544}  [Source:UniProtKB/TrEMBL;Acc:F7FTY9]
ENSCJAG00000019654	KNOWN_BY_PROJECTION	protein_coding	C16orf90	chromosome:C_jacchus3.2.1:12:1:121768101:1	3511308	3513277	R	chromosome 16 open reading frame 90 [Source:HGNC Symbol;Acc:HGNC:34455]
ENSCJAG00000022682	NOVEL	protein_coding	ENSCJAG00000022682	chromosome:C_jacchus3.2.1:11:1:130397257:1	112589911	112590916	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5T1]
ENSCJAG00000036457	NOVEL	pseudogene	ENSCJAG00000036457	scaffold:C_jacchus3.2.1:ACFV01202456.1:1:2118:1	261	1681	R	<no descrition>
ENSCJAG00000034721	KNOWN_BY_PROJECTION	protein_coding	OR5M9	chromosome:C_jacchus3.2.1:11:1:130397257:1	112438882	112439814	R	olfactory receptor, family 5, subfamily M, member 9 [Source:HGNC Symbol;Acc:HGNC:15294]
ENSCJAG00000008531	NOVEL	protein_coding	ENSCJAG00000008531	scaffold:C_jacchus3.2.1:GL286149.1:1:9364:1	1777	2747	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015714}  [Source:UniProtKB/TrEMBL;Acc:H9KWI9]
ENSCJAG00000034067	NOVEL	protein_coding	ENSCJAG00000034067	scaffold:C_jacchus3.2.1:GL285021.1:1:269126:1	156865	158526	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051215}  [Source:UniProtKB/TrEMBL;Acc:H9KYI8]
ENSCJAG00000010195	KNOWN_BY_PROJECTION	protein_coding	F5	chromosome:C_jacchus3.2.1:18:1:47448759:1	36875834	36949753	D	coagulation factor V (proaccelerin, labile factor) [Source:HGNC Symbol;Acc:HGNC:3542]
ENSCJAG00000013824	NOVEL	protein_coding	ENSCJAG00000013824	scaffold:C_jacchus3.2.1:ACFV01184603.1:1:11918:1	1774	3077	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025415}  [Source:UniProtKB/TrEMBL;Acc:H9KX19]
ENSCJAG00000034891	NOVEL	protein_coding	ENSCJAG00000034891	chromosome:C_jacchus3.2.1:11:1:130397257:1	112400803	112401726	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HE26]
ENSCJAG00000003291	KNOWN_BY_PROJECTION	protein_coding	IGHV6-1	scaffold:C_jacchus3.2.1:ACFV01197083.1:1:2429:1	1303	1700	D	immunoglobulin heavy variable 6-1 [Source:HGNC Symbol;Acc:HGNC:5662]
ENSCJAG00000002827	KNOWN	protein_coding	SGSM3	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1784747	1788594	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048521}  [Source:UniProtKB/TrEMBL;Acc:H9KYC3]
ENSCJAG00000012989	KNOWN	protein_coding	SLC38A1	chromosome:C_jacchus3.2.1:9:1:124281992:1	24780157	24836551	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023992}  [Source:UniProtKB/TrEMBL;Acc:F7EF30]
ENSCJAG00000023301	NOVEL	processed_pseudogene	ENSCJAG00000023301	chromosome:C_jacchus3.2.1:12:1:121768101:1	22420077	22420673	D	<no descrition>
ENSCJAG00000022685	NOVEL	protein_coding	ENSCJAG00000022685	chromosome:C_jacchus3.2.1:11:1:130397257:1	112324458	112325399	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041278}  [Source:UniProtKB/TrEMBL;Acc:F7H5S7]
ENSCJAG00000037194	NOVEL	protein_coding	ENSCJAG00000037194	chromosome:C_jacchus3.2.1:11:1:130397257:1	112300602	112301540	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I0B6]
ENSCJAG00000034075	NOVEL	processed_pseudogene	ENSCJAG00000034075	chromosome:C_jacchus3.2.1:9:1:124281992:1	116724344	116725336	D	<no descrition>
ENSCJAG00000021800	NOVEL	processed_pseudogene	ENSCJAG00000021800	chromosome:C_jacchus3.2.1:9:1:124281992:1	113638883	113639158	R	<no descrition>
ENSCJAG00000009167	KNOWN_BY_PROJECTION	protein_coding	OR5T3	chromosome:C_jacchus3.2.1:11:1:130397257:1	112266225	112267339	D	olfactory receptor, family 5, subfamily T, member 3 [Source:HGNC Symbol;Acc:HGNC:15297]
ENSCJAG00000022103	NOVEL	processed_pseudogene	ENSCJAG00000022103	chromosome:C_jacchus3.2.1:9:1:124281992:1	96488932	96489390	R	<no descrition>
ENSCJAG00000033633	NOVEL	processed_pseudogene	ENSCJAG00000033633	chromosome:C_jacchus3.2.1:9:1:124281992:1	78826870	78827166	R	<no descrition>
ENSCJAG00000010251	NOVEL	protein_coding	ENSCJAG00000010251	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	531394	533732	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018880}  [Source:UniProtKB/TrEMBL;Acc:H9KWN3]
ENSCJAG00000022273	NOVEL	processed_pseudogene	ENSCJAG00000022273	chromosome:C_jacchus3.2.1:9:1:124281992:1	76067839	76068783	D	<no descrition>
ENSCJAG00000033102	NOVEL	processed_pseudogene	ENSCJAG00000033102	chromosome:C_jacchus3.2.1:9:1:124281992:1	72645156	72645476	R	<no descrition>
ENSCJAG00000034320	KNOWN_BY_PROJECTION	protein_coding	OR5J2	chromosome:C_jacchus3.2.1:11:1:130397257:1	112168976	112169914	D	olfactory receptor, family 5, subfamily J, member 2 [Source:HGNC Symbol;Acc:HGNC:19612]
ENSCJAG00000022334	NOVEL	protein_coding	ENSCJAG00000022334	chromosome:C_jacchus3.2.1:12:1:121768101:1	25913648	25914109	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040974}  [Source:UniProtKB/TrEMBL;Acc:F7HPQ8]
ENSCJAG00000004059	NOVEL	pseudogene	ENSCJAG00000004059	scaffold:C_jacchus3.2.1:ACFV01183108.1:1:10299:1	8405	9207	D	<no descrition>
ENSCJAG00000031992	NOVEL	protein_coding	ENSCJAG00000031992	scaffold:C_jacchus3.2.1:ACFV01200365.1:1:2341:1	1726	2178	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017376}  [Source:UniProtKB/TrEMBL;Acc:H9KWL6]
ENSCJAG00000031451	NOVEL	protein_coding	ENSCJAG00000031451	scaffold:C_jacchus3.2.1:ACFV01187617.1:1:5171:1	968	3289	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046678}  [Source:UniProtKB/TrEMBL;Acc:H9KY72]
ENSCJAG00000020752	KNOWN_BY_PROJECTION	protein_coding	HS3ST4	chromosome:C_jacchus3.2.1:12:1:121768101:1	24949321	24949956	D	heparan sulfate (glucosamine) 3-O-sulfotransferase 4 [Source:HGNC Symbol;Acc:HGNC:5200]
ENSCJAG00000002334	KNOWN	protein_coding	FAM109B	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	247483	250059	R	Sesquipedalian-2 {ECO:0000313|EMBL:JAB09094.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004212}  [Source:UniProtKB/TrEMBL;Acc:H9KVS6]
ENSCJAG00000022689	KNOWN_BY_PROJECTION	protein_coding	OR5F1	chromosome:C_jacchus3.2.1:11:1:130397257:1	112106001	112106945	R	olfactory receptor, family 5, subfamily F, member 1 [Source:HGNC Symbol;Acc:HGNC:8343]
ENSCJAG00000021775	KNOWN	protein_coding	ITPRIPL2	chromosome:C_jacchus3.2.1:12:1:121768101:1	18720408	18722148	D	Inositol 1,4,5-trisphosphate receptor-interacting protein-like 2 {ECO:0000313|EMBL:JAB04746.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040480}  [Source:UniProtKB/TrEMBL;Acc:F7I2G3]
ENSCJAG00000022690	KNOWN_BY_PROJECTION	protein_coding	OR5I1	chromosome:C_jacchus3.2.1:11:1:130397257:1	112086356	112087300	R	olfactory receptor, family 5, subfamily I, member 1 [Source:HGNC Symbol;Acc:HGNC:8347]
ENSCJAG00000022691	KNOWN_BY_PROJECTION	protein_coding	OR5W2	chromosome:C_jacchus3.2.1:11:1:130397257:1	112069448	112070398	R	olfactory receptor, family 5, subfamily W, member 2 [Source:HGNC Symbol;Acc:HGNC:15299]
ENSCJAG00000023129	KNOWN_BY_PROJECTION	protein_coding	SNN	chromosome:C_jacchus3.2.1:12:1:121768101:1	15496409	15497142	R	stannin [Source:HGNC Symbol;Acc:HGNC:11149]
ENSCJAG00000022984	NOVEL	protein_coding	ENSCJAG00000022984	chromosome:C_jacchus3.2.1:12:1:121768101:1	15090679	15091029	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041539}  [Source:UniProtKB/TrEMBL;Acc:F7G5Z0]
ENSCJAG00000023253	NOVEL	protein_coding	ENSCJAG00000023253	chromosome:C_jacchus3.2.1:12:1:121768101:1	11402900	11403383	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043212}  [Source:UniProtKB/TrEMBL;Acc:F7ICS1]
ENSCJAG00000009179	KNOWN_BY_PROJECTION	protein_coding	OR5D16	chromosome:C_jacchus3.2.1:11:1:130397257:1	112042284	112043270	D	olfactory receptor, family 5, subfamily D, member 16 [Source:HGNC Symbol;Acc:HGNC:15283]
ENSCJAG00000021944	KNOWN_BY_PROJECTION	protein_coding	TMSB10	chromosome:C_jacchus3.2.1:12:1:121768101:1	8146116	8146517	D	thymosin beta 10 [Source:HGNC Symbol;Acc:HGNC:11879]
ENSCJAG00000007492	NOVEL	protein_coding	ENSCJAG00000007492	scaffold:C_jacchus3.2.1:GL286370.1:1:13567:1	5973	8472	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013922}  [Source:UniProtKB/TrEMBL;Acc:H9KWD9]
ENSCJAG00000032454	NOVEL	protein_coding	ENSCJAG00000032454	chromosome:C_jacchus3.2.1:12:1:121768101:1	7391690	7391962	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048177}  [Source:UniProtKB/TrEMBL;Acc:F7GYK7]
ENSCJAG00000033413	NOVEL	protein_coding	ENSCJAG00000033413	chromosome:C_jacchus3.2.1:11:1:130397257:1	111969476	111970423	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6Z1Z3]
ENSCJAG00000035351	NOVEL	protein_coding	ENSCJAG00000035351	scaffold:C_jacchus3.2.1:GL286299.1:1:24304:1	9531	10097	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045752}  [Source:UniProtKB/TrEMBL;Acc:H9KY54]
ENSCJAG00000021758	NOVEL	protein_coding	ENSCJAG00000021758	chromosome:C_jacchus3.2.1:12:1:121768101:1	4329715	4330322	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040463}  [Source:UniProtKB/TrEMBL;Acc:F7I4V2]
ENSCJAG00000009203	NOVEL	protein_coding	ENSCJAG00000009203	chromosome:C_jacchus3.2.1:11:1:130397257:1	111924409	111925317	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6XCC8]
ENSCJAG00000032971	NOVEL	protein_coding	ENSCJAG00000032971	scaffold:C_jacchus3.2.1:GL286439.1:1:356043:1	159690	172261	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011730}  [Source:UniProtKB/TrEMBL;Acc:H9KWB8]
ENSCJAG00000022694	NOVEL	protein_coding	ENSCJAG00000022694	chromosome:C_jacchus3.2.1:11:1:130397257:1	111868308	111869240	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5R0]
ENSCJAG00000021757	NOVEL	protein_coding	ENSCJAG00000021757	chromosome:C_jacchus3.2.1:12:1:121768101:1	3436729	3437261	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040462}  [Source:UniProtKB/TrEMBL;Acc:F7I4V4]
ENSCJAG00000019643	KNOWN_BY_PROJECTION	protein_coding	ZNF597	chromosome:C_jacchus3.2.1:12:1:121768101:1	3459641	3466759	R	zinc finger protein 597 [Source:HGNC Symbol;Acc:HGNC:26573]
ENSCJAG00000034055	NOVEL	protein_coding	ENSCJAG00000034055	scaffold:C_jacchus3.2.1:GL288099.1:1:18106:1	6286	9007	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051022}  [Source:UniProtKB/TrEMBL;Acc:H9KYI4]
ENSCJAG00000022696	KNOWN_BY_PROJECTION	protein_coding	OR4S1	chromosome:C_jacchus3.2.1:11:1:130397257:1	111541614	111542543	D	olfactory receptor, family 4, subfamily S, member 1 [Source:HGNC Symbol;Acc:HGNC:14705]
ENSCJAG00000009208	KNOWN_BY_PROJECTION	protein_coding	OR4A15	chromosome:C_jacchus3.2.1:11:1:130397257:1	111805837	111806871	D	olfactory receptor, family 4, subfamily A, member 15 [Source:HGNC Symbol;Acc:HGNC:15152]
ENSCJAG00000022697	NOVEL	protein_coding	ENSCJAG00000022697	chromosome:C_jacchus3.2.1:11:1:130397257:1	111493821	111494844	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5Q5]
ENSCJAG00000015410	NOVEL	pseudogene	ENSCJAG00000015410	scaffold:C_jacchus3.2.1:ACFV01201965.1:1:2189:1	412	712	R	<no descrition>
ENSCJAG00000013810	KNOWN	protein_coding	CWC22	scaffold:C_jacchus3.2.1:GL285184.1:1:26050:1	14099	26039	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025407}  [Source:UniProtKB/TrEMBL;Acc:H9KX18]
ENSCJAG00000015707	NOVEL	protein_coding	ENSCJAG00000015707	scaffold:C_jacchus3.2.1:ACFV01184279.1:1:10624:1	6168	7138	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028908}  [Source:UniProtKB/TrEMBL;Acc:H9KX56]
ENSCJAG00000010185	KNOWN_BY_PROJECTION	protein_coding	SELP	chromosome:C_jacchus3.2.1:18:1:47448759:1	36829182	36873438	D	selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:HGNC:10721]
ENSCJAG00000020342	NOVEL	protein_coding	ENSCJAG00000020342	scaffold:C_jacchus3.2.1:GL286387.1:1:16097:1	645	2491	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042048}  [Source:UniProtKB/TrEMBL;Acc:H9KXY5]
ENSCJAG00000023269	NOVEL	protein_coding	ENSCJAG00000023269	chromosome:C_jacchus3.2.1:9:1:124281992:1	114469679	114470053	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041781}  [Source:UniProtKB/TrEMBL;Acc:F7FEE2]
ENSCJAG00000012956	KNOWN	protein_coding	SLC38A2	chromosome:C_jacchus3.2.1:9:1:124281992:1	24644026	24658347	D	Sodium-coupled neutral amino acid transporter 2 {ECO:0000313|EMBL:JAB11397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050052}  [Source:UniProtKB/TrEMBL;Acc:F7FD91]
ENSCJAG00000009279	KNOWN	protein_coding	ATP6V0B	scaffold:C_jacchus3.2.1:ACFV01184846.1:1:16312:1	7790	11104	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017053}; V-type proton ATPase 21 kDa proteolipid subunit isoform 1 {ECO:0000313|EMBL:JAB31530.1}  [Source:UniProtKB/TrEMBL;Acc:H9KWK8]
ENSCJAG00000010997	NOVEL	protein_coding	ENSCJAG00000010997	chromosome:C_jacchus3.2.1:11:1:130397257:1	98909637	98910281	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020294}  [Source:UniProtKB/TrEMBL;Acc:F7DKH3]
ENSCJAG00000023250	KNOWN_BY_PROJECTION	protein_coding	FIBIN	chromosome:C_jacchus3.2.1:11:1:130397257:1	90077818	90080628	D	fin bud initiation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:HGNC:33747]
ENSCJAG00000011126	KNOWN	protein_coding	MED31	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	313171	319748	D	Mediator of RNA polymerase II transcription subunit 31 {ECO:0000313|EMBL:JAB10847.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020541}  [Source:UniProtKB/TrEMBL;Acc:H9KWS1]
ENSCJAG00000032412	NOVEL	protein_coding	ENSCJAG00000032412	scaffold:C_jacchus3.2.1:GL284957.1:1:46249:1	14768	15339	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042296}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ0]
ENSCJAG00000022760	NOVEL	protein_coding	ENSCJAG00000022760	chromosome:C_jacchus3.2.1:9:1:124281992:1	102068741	102071221	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041343}  [Source:UniProtKB/TrEMBL;Acc:F7F2M4]
ENSCJAG00000011105	NOVEL	pseudogene	ENSCJAG00000011105	scaffold:C_jacchus3.2.1:ACFV01195444.1:1:2730:1	1523	1842	D	<no descrition>
ENSCJAG00000022905	NOVEL	protein_coding	ENSCJAG00000022905	chromosome:C_jacchus3.2.1:11:1:130397257:1	83262591	83263093	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041466}  [Source:UniProtKB/TrEMBL;Acc:F7H5A4]
ENSCJAG00000033997	NOVEL	protein_coding	ENSCJAG00000033997	chromosome:C_jacchus3.2.1:9:1:124281992:1	78930189	78932421	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045632}  [Source:UniProtKB/TrEMBL;Acc:F6QNY5]
ENSCJAG00000022000	KNOWN	protein_coding	ENSCJAG00000022000	chromosome:C_jacchus3.2.1:11:1:130397257:1	74521757	74522824	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043884}  [Source:UniProtKB/TrEMBL;Acc:F7I590]
ENSCJAG00000021963	KNOWN	protein_coding	ENSCJAG00000021963	chromosome:C_jacchus3.2.1:11:1:130397257:1	72984084	72985982	D	Callithrix jacchus tyrosyl-DNA phosphodiesterase 2 (TDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001253765]
ENSCJAG00000022271	NOVEL	protein_coding	ENSCJAG00000022271	chromosome:C_jacchus3.2.1:9:1:124281992:1	67338290	67338415	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040918}  [Source:UniProtKB/TrEMBL;Acc:F7HZU8]
ENSCJAG00000022240	NOVEL	protein_coding	ENSCJAG00000022240	chromosome:C_jacchus3.2.1:11:1:130397257:1	70515589	70517784	D	<no descrition>
ENSCJAG00000023390	NOVEL	protein_coding	ENSCJAG00000023390	chromosome:C_jacchus3.2.1:9:1:124281992:1	58303038	58303241	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041886}  [Source:UniProtKB/TrEMBL;Acc:F7HF57]
ENSCJAG00000022242	KNOWN_BY_PROJECTION	protein_coding	OR10A4	chromosome:C_jacchus3.2.1:11:1:130397257:1	70276334	70277327	D	olfactory receptor, family 10, subfamily A, member 4 [Source:HGNC Symbol;Acc:HGNC:15130]
ENSCJAG00000022243	NOVEL	protein_coding	ENSCJAG00000022243	chromosome:C_jacchus3.2.1:11:1:130397257:1	70155494	70156429	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I6W8]
ENSCJAG00000015572	KNOWN_BY_PROJECTION	protein_coding	CASP16	chromosome:C_jacchus3.2.1:12:1:121768101:1	3215686	3221272	D	caspase 16, apoptosis-related cysteine peptidase (putative) [Source:HGNC Symbol;Acc:HGNC:27290]
ENSCJAG00000023126	NOVEL	protein_coding	ENSCJAG00000023126	chromosome:C_jacchus3.2.1:9:1:124281992:1	53987453	53988793	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041654}  [Source:UniProtKB/TrEMBL;Acc:F7HFH6]
ENSCJAG00000015577	KNOWN_BY_PROJECTION	protein_coding	ZNF200	chromosome:C_jacchus3.2.1:12:1:121768101:1	3270723	3280925	R	zinc finger protein 200 [Source:HGNC Symbol;Acc:HGNC:12993]
ENSCJAG00000015554	KNOWN_BY_PROJECTION	protein_coding	ZNF213	chromosome:C_jacchus3.2.1:12:1:121768101:1	3198765	3202929	D	zinc finger protein 213 [Source:HGNC Symbol;Acc:HGNC:13005]
ENSCJAG00000022588	KNOWN_BY_PROJECTION	protein_coding	OR10P1	chromosome:C_jacchus3.2.1:9:1:124281992:1	44424498	44425495	D	olfactory receptor, family 10, subfamily P, member 1 [Source:HGNC Symbol;Acc:HGNC:15378]
ENSCJAG00000019130	NOVEL	protein_coding	ENSCJAG00000019130	chromosome:C_jacchus3.2.1:9:1:124281992:1	44289402	44290338	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052073}  [Source:UniProtKB/TrEMBL;Acc:F7IGW8]
ENSCJAG00000022585	KNOWN_BY_PROJECTION	protein_coding	OR6C3	chromosome:C_jacchus3.2.1:9:1:124281992:1	44240207	44241142	D	olfactory receptor, family 6, subfamily C, member 3 [Source:HGNC Symbol;Acc:HGNC:15437]
ENSCJAG00000022584	KNOWN_BY_PROJECTION	protein_coding	OR6C1	chromosome:C_jacchus3.2.1:9:1:124281992:1	44233224	44234278	D	olfactory receptor, family 6, subfamily C, member 1 [Source:HGNC Symbol;Acc:HGNC:8355]
ENSCJAG00000022583	KNOWN_BY_PROJECTION	protein_coding	OR6C6	chromosome:C_jacchus3.2.1:9:1:124281992:1	44204071	44205000	D	olfactory receptor, family 6, subfamily C, member 6 [Source:HGNC Symbol;Acc:HGNC:31293]
ENSCJAG00000022582	NOVEL	protein_coding	ENSCJAG00000022582	chromosome:C_jacchus3.2.1:9:1:124281992:1	44182175	44183083	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7DWS1]
ENSCJAG00000022451	NOVEL	processed_pseudogene	ENSCJAG00000022451	chromosome:C_jacchus3.2.1:4:1:171630274:1	1890817	1891251	R	<no descrition>
ENSCJAG00000012877	KNOWN	protein_coding	SLC38A4	chromosome:C_jacchus3.2.1:9:1:124281992:1	24157488	24243512	D	Sodium-coupled neutral amino acid transporter 4 {ECO:0000313|EMBL:JAB34524.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023720}  [Source:UniProtKB/TrEMBL;Acc:F7GCC8]
ENSCJAG00000021751	NOVEL	processed_pseudogene	ENSCJAG00000021751	scaffold:C_jacchus3.2.1:GL286450.1:1:474672:1	438433	438924	R	<no descrition>
ENSCJAG00000022809	NOVEL	processed_pseudogene	ENSCJAG00000022809	chromosome:C_jacchus3.2.1:X:1:142054208:1	140394255	140394821	R	<no descrition>
ENSCJAG00000014957	KNOWN	protein_coding	TRAF3IP3	chromosome:C_jacchus3.2.1:19:1:49578535:1	31854493	31880833	D	TRAF3-interacting JNK-activating modulator {ECO:0000313|EMBL:JAB16438.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027683}  [Source:UniProtKB/TrEMBL;Acc:F7G4W1]
ENSCJAG00000022403	NOVEL	processed_pseudogene	ENSCJAG00000022403	chromosome:C_jacchus3.2.1:X:1:142054208:1	128069547	128069999	D	<no descrition>
ENSCJAG00000034971	NOVEL	processed_pseudogene	ENSCJAG00000034971	chromosome:C_jacchus3.2.1:X:1:142054208:1	117256339	117256815	D	<no descrition>
ENSCJAG00000022333	KNOWN_BY_PROJECTION	protein_coding	ERVFRD-1	chromosome:C_jacchus3.2.1:4:1:171630274:1	17531533	17534730	D	endogenous retrovirus group FRD, member 1 [Source:HGNC Symbol;Acc:HGNC:33823]
ENSCJAG00000021760	NOVEL	protein_coding	ENSCJAG00000021760	chromosome:C_jacchus3.2.1:4:1:171630274:1	15125295	15125684	D	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7I4U8]
ENSCJAG00000022865	NOVEL	protein_coding	ENSCJAG00000022865	chromosome:C_jacchus3.2.1:4:1:171630274:1	14214209	14214688	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041436}  [Source:UniProtKB/TrEMBL;Acc:F7HFR3]
ENSCJAG00000034939	NOVEL	protein_coding	ENSCJAG00000034939	chromosome:C_jacchus3.2.1:4:1:171630274:1	10896786	10896908	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047971}  [Source:UniProtKB/TrEMBL;Acc:F7DLA7]
ENSCJAG00000035466	NOVEL	protein_coding	ENSCJAG00000035466	chromosome:C_jacchus3.2.1:4:1:171630274:1	10010920	10011348	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045247}  [Source:UniProtKB/TrEMBL;Acc:F6QRY9]
ENSCJAG00000034032	KNOWN_BY_PROJECTION	protein_coding	HDGFL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	5838621	5839130	R	hepatoma derived growth factor-like 1 [Source:HGNC Symbol;Acc:HGNC:21095]
ENSCJAG00000022430	KNOWN_BY_PROJECTION	protein_coding	HIST1H2BA	chromosome:C_jacchus3.2.1:4:1:171630274:1	2657775	2658252	R	histone cluster 1, H2ba [Source:HGNC Symbol;Acc:HGNC:18730]
ENSCJAG00000022436	KNOWN_BY_PROJECTION	protein_coding	RPS21	chromosome:C_jacchus3.2.1:4:1:171630274:1	1961213	1961464	D	ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
ENSCJAG00000012873	KNOWN_BY_PROJECTION	protein_coding	AMIGO2	chromosome:C_jacchus3.2.1:9:1:124281992:1	23847140	23849980	D	adhesion molecule with Ig-like domain 2 [Source:HGNC Symbol;Acc:HGNC:24073]
ENSCJAG00000012864	KNOWN_BY_PROJECTION	protein_coding	PCED1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	23678006	23697749	R	PC-esterase domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28255]
ENSCJAG00000021890	NOVEL	protein_coding	ENSCJAG00000021890	chromosome:C_jacchus3.2.1:4:1:171630274:1	1120822	1121311	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7FGJ6]
ENSCJAG00000032580	NOVEL	protein_coding	ENSCJAG00000032580	scaffold:C_jacchus3.2.1:ACFV01176866.1:1:34792:1	17461	18831	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040889}  [Source:UniProtKB/TrEMBL;Acc:H9KXS1]
ENSCJAG00000012838	KNOWN	protein_coding	RPAP3	chromosome:C_jacchus3.2.1:9:1:124281992:1	23186929	23242912	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023554}  [Source:UniProtKB/TrEMBL;Acc:F7I683]
ENSCJAG00000000608	NOVEL	protein_coding	ENSCJAG00000000608	scaffold:C_jacchus3.2.1:GL286401.1:1:14333:1	10397	12117	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001039}  [Source:UniProtKB/TrEMBL;Acc:H9KVL9]
ENSCJAG00000022389	NOVEL	protein_coding	ENSCJAG00000022389	chromosome:C_jacchus3.2.1:X:1:142054208:1	126144043	126145095	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041018}  [Source:UniProtKB/TrEMBL;Acc:F7FGX9]
ENSCJAG00000018573	NOVEL	pseudogene	ENSCJAG00000018573	chromosome:C_jacchus3.2.1:9:1:124281992:1	21948104	21949548	D	<no descrition>
ENSCJAG00000032252	KNOWN_BY_PROJECTION	protein_coding	C6orf52	scaffold:C_jacchus3.2.1:ACFV01175454.1:1:24771:1	7397	11624	R	chromosome 6 open reading frame 52 [Source:HGNC Symbol;Acc:HGNC:20881]
ENSCJAG00000018574	NOVEL	pseudogene	ENSCJAG00000018574	chromosome:C_jacchus3.2.1:9:1:124281992:1	21875825	21876126	D	<no descrition>
ENSCJAG00000035333	NOVEL	protein_coding	ENSCJAG00000035333	scaffold:C_jacchus3.2.1:ACFV01182973.1:1:8988:1	4839	5960	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045736}  [Source:UniProtKB/TrEMBL;Acc:H9KY52]
ENSCJAG00000015502	NOVEL	protein_coding	ENSCJAG00000015502	chromosome:C_jacchus3.2.1:12:1:121768101:1	3095177	3095968	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050039}  [Source:UniProtKB/TrEMBL;Acc:F7FDF6]
ENSCJAG00000010340	NOVEL	pseudogene	ENSCJAG00000010340	scaffold:C_jacchus3.2.1:GL286644.1:1:15709:1	3875	4037	R	<no descrition>
ENSCJAG00000015476	KNOWN_BY_PROJECTION	protein_coding	MMP25	chromosome:C_jacchus3.2.1:12:1:121768101:1	3086875	3109696	D	matrix metallopeptidase 25 [Source:HGNC Symbol;Acc:HGNC:14246]
ENSCJAG00000038155	NOVEL	protein_coding	ENSCJAG00000038155	scaffold:C_jacchus3.2.1:GL285008.1:1:46170:1	30222	35276	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052094}  [Source:UniProtKB/TrEMBL;Acc:H9KYL1]
ENSCJAG00000015473	NOVEL	pseudogene	ENSCJAG00000015473	chromosome:C_jacchus3.2.1:12:1:121768101:1	3068525	3069117	D	<no descrition>
ENSCJAG00000018576	KNOWN_BY_PROJECTION	protein_coding	CD69	chromosome:C_jacchus3.2.1:9:1:124281992:1	21843485	21851813	D	CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]
ENSCJAG00000022007	NOVEL	protein_coding	ENSCJAG00000022007	chromosome:C_jacchus3.2.1:X:1:142054208:1	121170617	121171921	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040677}  [Source:UniProtKB/TrEMBL;Acc:F7I6Z7]
ENSCJAG00000022006	KNOWN_BY_PROJECTION	protein_coding	TFDP3	chromosome:C_jacchus3.2.1:X:1:142054208:1	121090265	121091953	R	transcription factor Dp family, member 3 [Source:HGNC Symbol;Acc:HGNC:24603]
ENSCJAG00000032690	NOVEL	protein_coding	ENSCJAG00000032690	chromosome:C_jacchus3.2.1:X:1:142054208:1	120800882	120801631	R	40S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}  [Source:UniProtKB/TrEMBL;Acc:F7I5D8]
ENSCJAG00000019146	NOVEL	protein_coding	ENSCJAG00000019146	scaffold:C_jacchus3.2.1:GL285136.1:1:61368:1	34636	35529	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035532}  [Source:UniProtKB/TrEMBL;Acc:H9KXH6]
ENSCJAG00000023122	NOVEL	protein_coding	ENSCJAG00000023122	chromosome:C_jacchus3.2.1:X:1:142054208:1	119390006	119390341	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041650}  [Source:UniProtKB/TrEMBL;Acc:F7HFI2]
ENSCJAG00000022479	KNOWN_BY_PROJECTION	protein_coding	GPR119	chromosome:C_jacchus3.2.1:X:1:142054208:1	118289499	118290691	R	G protein-coupled receptor 119 [Source:HGNC Symbol;Acc:HGNC:19060]
ENSCJAG00000015462	KNOWN_BY_PROJECTION	protein_coding	CCDC64B	chromosome:C_jacchus3.2.1:12:1:121768101:1	3057854	3068009	R	coiled-coil domain containing 64B [Source:HGNC Symbol;Acc:HGNC:33584]
ENSCJAG00000013759	KNOWN_BY_PROJECTION	protein_coding	CMTM7	scaffold:C_jacchus3.2.1:GL285762.1:1:35922:1	1573	12556	D	CKLF-like MARVEL transmembrane domain containing 7 [Source:HGNC Symbol;Acc:HGNC:19178]
ENSCJAG00000035800	NOVEL	protein_coding	ENSCJAG00000035800	chromosome:C_jacchus3.2.1:X:1:142054208:1	116408568	116408705	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052372}  [Source:UniProtKB/TrEMBL;Acc:F7INP0]
ENSCJAG00000022482	KNOWN_BY_PROJECTION	protein_coding	ACTRT1	chromosome:C_jacchus3.2.1:X:1:142054208:1	115917398	115918838	R	actin-related protein T1 [Source:HGNC Symbol;Acc:HGNC:24027]
ENSCJAG00000022483	NOVEL	protein_coding	ENSCJAG00000022483	chromosome:C_jacchus3.2.1:X:1:142054208:1	114422500	114423885	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041096}  [Source:UniProtKB/TrEMBL;Acc:F7FG81]
ENSCJAG00000032785	NOVEL	protein_coding	ENSCJAG00000032785	chromosome:C_jacchus3.2.1:X:1:142054208:1	113246254	113246496	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043236}  [Source:UniProtKB/TrEMBL;Acc:F7IAI2]
ENSCJAG00000022518	NOVEL	protein_coding	ENSCJAG00000022518	chromosome:C_jacchus3.2.1:X:1:142054208:1	111258382	111258852	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041125}  [Source:UniProtKB/TrEMBL;Acc:F7DXE8]
ENSCJAG00000022327	KNOWN	protein_coding	RNF113A	chromosome:C_jacchus3.2.1:X:1:142054208:1	108002073	108003418	R	RING finger protein 113A {ECO:0000313|EMBL:JAB21170.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040967}  [Source:UniProtKB/TrEMBL;Acc:F7HPV5]
ENSCJAG00000021967	NOVEL	processed_pseudogene	ENSCJAG00000021967	chromosome:C_jacchus3.2.1:1:1:210400635:1	186916919	186917410	R	<no descrition>
ENSCJAG00000021798	NOVEL	processed_pseudogene	ENSCJAG00000021798	chromosome:C_jacchus3.2.1:1:1:210400635:1	185998461	185998826	R	<no descrition>
ENSCJAG00000018584	KNOWN_BY_PROJECTION	protein_coding	KLRF1	chromosome:C_jacchus3.2.1:9:1:124281992:1	21720039	21751700	R	killer cell lectin-like receptor subfamily F, member 1 [Source:HGNC Symbol;Acc:HGNC:13342]
ENSCJAG00000021898	NOVEL	processed_pseudogene	ENSCJAG00000021898	chromosome:C_jacchus3.2.1:1:1:210400635:1	171194291	171195106	R	<no descrition>
ENSCJAG00000023452	NOVEL	processed_pseudogene	ENSCJAG00000023452	chromosome:C_jacchus3.2.1:1:1:210400635:1	168644275	168645123	D	<no descrition>
ENSCJAG00000021731	NOVEL	protein_coding	ENSCJAG00000021731	chromosome:C_jacchus3.2.1:5:1:159171411:1	31597463	31598086	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040443}  [Source:UniProtKB/TrEMBL;Acc:F7I9I9]
ENSCJAG00000018604	NOVEL	protein_coding	ENSCJAG00000018604	chromosome:C_jacchus3.2.1:9:1:124281992:1	21711400	21712721	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034536}  [Source:UniProtKB/TrEMBL;Acc:F7IAU3]
ENSCJAG00000022307	KNOWN_BY_PROJECTION	protein_coding	TCEB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	27656973	27657430	D	transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) [Source:HGNC Symbol;Acc:HGNC:11617]
ENSCJAG00000018608	NOVEL	pseudogene	ENSCJAG00000018608	chromosome:C_jacchus3.2.1:9:1:124281992:1	21688297	21689896	R	<no descrition>
ENSCJAG00000022306	KNOWN_BY_PROJECTION	protein_coding	NKX2-4	chromosome:C_jacchus3.2.1:5:1:159171411:1	27105861	27106349	R	NK2 homeobox 4 [Source:HGNC Symbol;Acc:HGNC:7837]
ENSCJAG00000032051	NOVEL	protein_coding	ENSCJAG00000032051	chromosome:C_jacchus3.2.1:5:1:159171411:1	25454473	25454715	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050610}  [Source:UniProtKB/TrEMBL;Acc:F7H8F5]
ENSCJAG00000022305	KNOWN_BY_PROJECTION	protein_coding	SCP2D1	chromosome:C_jacchus3.2.1:5:1:159171411:1	24403912	24404358	D	SCP2 sterol-binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16211]
ENSCJAG00000018605	KNOWN_BY_PROJECTION	protein_coding	CLEC2B	chromosome:C_jacchus3.2.1:9:1:124281992:1	21656943	21697482	D	C-type lectin domain family 2, member B [Source:HGNC Symbol;Acc:HGNC:2053]
ENSCJAG00000034322	NOVEL	protein_coding	ENSCJAG00000034322	chromosome:C_jacchus3.2.1:9:1:124281992:1	21621715	21631197	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043934}  [Source:UniProtKB/TrEMBL;Acc:F7HRL5]
ENSCJAG00000010050	KNOWN_BY_PROJECTION	protein_coding	SCYL3	chromosome:C_jacchus3.2.1:18:1:47448759:1	36565654	36610397	D	SCY1-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:19285]
ENSCJAG00000023289	NOVEL	protein_coding	ENSCJAG00000023289	chromosome:C_jacchus3.2.1:5:1:159171411:1	8723342	8723737	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041801}  [Source:UniProtKB/TrEMBL;Acc:F7ELP9]
ENSCJAG00000015444	KNOWN_BY_PROJECTION	protein_coding	HCFC1R1	chromosome:C_jacchus3.2.1:12:1:121768101:1	3052776	3054422	R	host cell factor C1 regulator 1 (XPO1 dependent) [Source:HGNC Symbol;Acc:HGNC:21198]
ENSCJAG00000022978	NOVEL	protein_coding	ENSCJAG00000022978	chromosome:C_jacchus3.2.1:5:1:159171411:1	4547029	4547442	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041533}  [Source:UniProtKB/TrEMBL;Acc:F7G624]
ENSCJAG00000022560	KNOWN_BY_PROJECTION	protein_coding	ACTL10	chromosome:C_jacchus3.2.1:5:1:159171411:1	3639121	3641125	R	actin-like 10 [Source:HGNC Symbol;Acc:HGNC:16127]
ENSCJAG00000012603	NOVEL	protein_coding	ENSCJAG00000012603	chromosome:C_jacchus3.2.1:5:1:159171411:1	2061729	2061923	R	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:F7CZ68]
ENSCJAG00000015434	KNOWN_BY_PROJECTION	protein_coding	TNFRSF12A	chromosome:C_jacchus3.2.1:12:1:121768101:1	3050494	3052531	D	tumor necrosis factor receptor superfamily, member 12A [Source:HGNC Symbol;Acc:HGNC:18152]
ENSCJAG00000022364	NOVEL	protein_coding	ENSCJAG00000022364	chromosome:C_jacchus3.2.1:1:1:210400635:1	202614471	202614941	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040993}  [Source:UniProtKB/TrEMBL;Acc:F7IT05]
ENSCJAG00000022759	NOVEL	protein_coding	ENSCJAG00000022759	chromosome:C_jacchus3.2.1:1:1:210400635:1	201129785	201130294	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041342}  [Source:UniProtKB/TrEMBL;Acc:F7F2N6]
ENSCJAG00000022406	NOVEL	protein_coding	ENSCJAG00000022406	chromosome:C_jacchus3.2.1:1:1:210400635:1	194158676	194159809	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041028}  [Source:UniProtKB/TrEMBL;Acc:F7FGV6]
ENSCJAG00000022405	NOVEL	protein_coding	NDUFA4	chromosome:C_jacchus3.2.1:1:1:210400635:1	194140049	194140565	D	NADH dehydrogenase 1 alpha subcomplex, 4, 9kDa (Predicted) {ECO:0000313|EMBL:ABZ10455.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041027}  [Source:UniProtKB/TrEMBL;Acc:B0KWS6]
ENSCJAG00000021762	KNOWN	protein_coding	ENSCJAG00000021762	chromosome:C_jacchus3.2.1:1:1:210400635:1	192752635	192753505	D	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7I4U5]
ENSCJAG00000021821	KNOWN	protein_coding	TSSK2	chromosome:C_jacchus3.2.1:1:1:210400635:1	183533245	183534591	D	Testis-specific serine/threonine-protein kinase 2 {ECO:0000313|EMBL:JAB50577.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040522}  [Source:UniProtKB/TrEMBL;Acc:F7HK36]
ENSCJAG00000021949	NOVEL	protein_coding	ENSCJAG00000021949	chromosome:C_jacchus3.2.1:1:1:210400635:1	182829397	182829651	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040633}  [Source:UniProtKB/TrEMBL;Acc:F7IBR6]
ENSCJAG00000015431	KNOWN	protein_coding	PAQR4	chromosome:C_jacchus3.2.1:12:1:121768101:1	2984788	2988930	D	Progestin and adipoQ receptor family member 4 {ECO:0000313|EMBL:JAB24652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028419}  [Source:UniProtKB/TrEMBL;Acc:F6XFB3]
ENSCJAG00000015415	KNOWN	protein_coding	PKMYT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2983733	3004776	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028406}  [Source:UniProtKB/TrEMBL;Acc:F6Y3G8]
ENSCJAG00000034983	NOVEL	protein_coding	ENSCJAG00000034983	chromosome:C_jacchus3.2.1:18:1:47448759:1	36368772	36370059	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045039}  [Source:UniProtKB/TrEMBL;Acc:F6TUS9]
ENSCJAG00000022454	NOVEL	processed_pseudogene	ENSCJAG00000022454	chromosome:C_jacchus3.2.1:6:1:158406734:1	149122888	149123763	R	<no descrition>
ENSCJAG00000034694	NOVEL	protein_coding	ENSCJAG00000034694	chromosome:C_jacchus3.2.1:9:1:124281992:1	42307573	42307809	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045479}  [Source:UniProtKB/TrEMBL;Acc:F6Q3S4]
ENSCJAG00000015381	KNOWN_BY_PROJECTION	protein_coding	FLYWCH1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2912303	3048969	D	FLYWCH-type zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:25404]
ENSCJAG00000037649	NOVEL	protein_coding	ENSCJAG00000037649	chromosome:C_jacchus3.2.1:9:1:124281992:1	41128926	41129291	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052193}  [Source:UniProtKB/TrEMBL;Acc:F7HVQ9]
ENSCJAG00000022743	NOVEL	protein_coding	ENSCJAG00000022743	chromosome:C_jacchus3.2.1:11:1:130397257:1	69286689	69287636	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041336}  [Source:UniProtKB/TrEMBL;Acc:F7FFQ0]
ENSCJAG00000034947	NOVEL	pseudogene	ENSCJAG00000034947	chromosome:C_jacchus3.2.1:12:1:121768101:1	2897485	2897663	D	<no descrition>
ENSCJAG00000022742	NOVEL	protein_coding	ENSCJAG00000022742	chromosome:C_jacchus3.2.1:11:1:130397257:1	69271484	69272431	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041335}  [Source:UniProtKB/TrEMBL;Acc:F7FFQ8]
ENSCJAG00000022572	NOVEL	protein_coding	ENSCJAG00000022572	chromosome:C_jacchus3.2.1:9:1:124281992:1	40967085	40967363	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041173}  [Source:UniProtKB/TrEMBL;Acc:F7DWW0]
ENSCJAG00000022571	NOVEL	protein_coding	ENSCJAG00000022571	chromosome:C_jacchus3.2.1:9:1:124281992:1	40477192	40478663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041172}  [Source:UniProtKB/TrEMBL;Acc:F7DWW6]
ENSCJAG00000023286	KNOWN_BY_PROJECTION	protein_coding	OR52E4	chromosome:C_jacchus3.2.1:11:1:130397257:1	69240994	69242023	D	olfactory receptor, family 52, subfamily E, member 4 [Source:HGNC Symbol;Acc:HGNC:15213]
ENSCJAG00000015354	KNOWN_BY_PROJECTION	protein_coding	SRRM2	chromosome:C_jacchus3.2.1:12:1:121768101:1	2820824	2840756	R	serine/arginine repetitive matrix 2 [Source:HGNC Symbol;Acc:HGNC:16639]
ENSCJAG00000021779	NOVEL	protein_coding	OR52H1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68973899	68974962	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I2F8]
ENSCJAG00000033468	NOVEL	protein_coding	ENSCJAG00000033468	chromosome:C_jacchus3.2.1:9:1:124281992:1	34301260	34301511	D	40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671}  [Source:UniProtKB/TrEMBL;Acc:F7GWA8]
ENSCJAG00000015343	KNOWN_BY_PROJECTION	protein_coding	PRSS33	chromosome:C_jacchus3.2.1:12:1:121768101:1	2805245	2807146	D	protease, serine, 33 [Source:HGNC Symbol;Acc:HGNC:30405]
ENSCJAG00000009912	KNOWN_BY_PROJECTION	protein_coding	MROH9	chromosome:C_jacchus3.2.1:18:1:47448759:1	35506998	35620110	R	maestro heat-like repeat family member 9 [Source:HGNC Symbol;Acc:HGNC:26287]
ENSCJAG00000021782	KNOWN_BY_PROJECTION	protein_coding	OR51B6	chromosome:C_jacchus3.2.1:11:1:130397257:1	68763211	68764149	D	olfactory receptor, family 51, subfamily B, member 6 [Source:HGNC Symbol;Acc:HGNC:19600]
ENSCJAG00000023028	KNOWN_BY_PROJECTION	protein_coding	GOLM1	chromosome:C_jacchus3.2.1:9:1:124281992:1	24906367	24907783	R	golgi membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:15451]
ENSCJAG00000021892	NOVEL	protein_coding	ENSCJAG00000021892	chromosome:C_jacchus3.2.1:9:1:124281992:1	21130833	21131383	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040584}  [Source:UniProtKB/TrEMBL;Acc:F7INJ5]
ENSCJAG00000018754	NOVEL	protein_coding	ENSCJAG00000018754	chromosome:C_jacchus3.2.1:9:1:124281992:1	21128294	21128785	R	<no descrition>
ENSCJAG00000021784	NOVEL	protein_coding	OR51B2	chromosome:C_jacchus3.2.1:11:1:130397257:1	68729196	68730236	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXB9]
ENSCJAG00000022326	NOVEL	protein_coding	ENSCJAG00000022326	chromosome:C_jacchus3.2.1:9:1:124281992:1	20049182	20049631	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040966}  [Source:UniProtKB/TrEMBL;Acc:F7HPW0]
ENSCJAG00000021785	NOVEL	protein_coding	OR51B4	chromosome:C_jacchus3.2.1:11:1:130397257:1	68716946	68717888	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXB8]
ENSCJAG00000037544	NOVEL	protein_coding	ENSCJAG00000037544	chromosome:C_jacchus3.2.1:9:1:124281992:1	17911871	17912023	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052274}  [Source:UniProtKB/TrEMBL;Acc:F7IGU7]
ENSCJAG00000021786	NOVEL	protein_coding	OR51V1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68641927	68642886	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXB2]
ENSCJAG00000021787	KNOWN_BY_PROJECTION	protein_coding	OR52Z1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68620853	68621812	R	olfactory receptor, family 52, subfamily Z, member 1 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:19596]
ENSCJAG00000022160	KNOWN	protein_coding	KCNA6	chromosome:C_jacchus3.2.1:9:1:124281992:1	16468997	16470759	D	Potassium voltage-gated channel subfamily A member 6 {ECO:0000313|EMBL:JAB27947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040816}  [Source:UniProtKB/TrEMBL;Acc:F7IIQ4]
ENSCJAG00000022159	NOVEL	protein_coding	ENSCJAG00000022159	chromosome:C_jacchus3.2.1:9:1:124281992:1	16420646	16420867	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040815}  [Source:UniProtKB/TrEMBL;Acc:F7IIQ6]
ENSCJAG00000021788	NOVEL	protein_coding	ENSCJAG00000021788	chromosome:C_jacchus3.2.1:11:1:130397257:1	68613492	68614439	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I047]
ENSCJAG00000000675	KNOWN	protein_coding	FBXL14	chromosome:C_jacchus3.2.1:9:1:124281992:1	13200118	13201311	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001160}  [Source:UniProtKB/TrEMBL;Acc:F6UYX1]
ENSCJAG00000021822	NOVEL	protein_coding	ENSCJAG00000021822	chromosome:C_jacchus3.2.1:9:1:124281992:1	15643270	15643612	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040523}  [Source:UniProtKB/TrEMBL;Acc:F7HK34]
ENSCJAG00000021789	NOVEL	protein_coding	OR52A1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68601137	68602075	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXB1]
ENSCJAG00000035367	NOVEL	protein_coding	OLFR600	chromosome:C_jacchus3.2.1:11:1:130397257:1	68488200	68489144	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXA7]
ENSCJAG00000031956	NOVEL	protein_coding	ENSCJAG00000031956	chromosome:C_jacchus3.2.1:9:1:124281992:1	11827414	11828214	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F6TH90]
ENSCJAG00000033561	NOVEL	protein_coding	ENSCJAG00000033561	chromosome:C_jacchus3.2.1:11:1:130397257:1	68449249	68450193	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7FDD2]
ENSCJAG00000023422	NOVEL	protein_coding	ENSCJAG00000023422	chromosome:C_jacchus3.2.1:9:1:124281992:1	11822654	11823583	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7GZF9]
ENSCJAG00000031819	NOVEL	protein_coding	OLFR599	chromosome:C_jacchus3.2.1:11:1:130397257:1	68475406	68476356	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXA6]
ENSCJAG00000032362	NOVEL	protein_coding	ENSCJAG00000032362	chromosome:C_jacchus3.2.1:11:1:130397257:1	68433248	68434195	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7E2Y9]
ENSCJAG00000021745	NOVEL	protein_coding	ENSCJAG00000021745	chromosome:C_jacchus3.2.1:9:1:124281992:1	10561303	10562232	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I762]
ENSCJAG00000023064	NOVEL	protein_coding	ENSCJAG00000023064	chromosome:C_jacchus3.2.1:11:1:130397257:1	68404206	68405156	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041597}  [Source:UniProtKB/TrEMBL;Acc:F7F1F6]
ENSCJAG00000021743	NOVEL	protein_coding	ENSCJAG00000021743	chromosome:C_jacchus3.2.1:9:1:124281992:1	10464217	10465128	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I765]
ENSCJAG00000031525	NOVEL	protein_coding	COR51P3	chromosome:C_jacchus3.2.1:11:1:130397257:1	68356811	68357752	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VXA3]
ENSCJAG00000021655	NOVEL	protein_coding	ENSCJAG00000021655	chromosome:C_jacchus3.2.1:9:1:124281992:1	10430536	10432163	R	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I091]
ENSCJAG00000015679	NOVEL	protein_coding	OLFR586	chromosome:C_jacchus3.2.1:11:1:130397257:1	68314596	68315549	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6Q626]
ENSCJAG00000021652	NOVEL	protein_coding	ENSCJAG00000021652	chromosome:C_jacchus3.2.1:9:1:124281992:1	10337804	10338703	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7B139]
ENSCJAG00000021742	KNOWN_BY_PROJECTION	protein_coding	TAS2R20	chromosome:C_jacchus3.2.1:9:1:124281992:1	10314787	10315713	D	taste receptor, type 2, member 20 [Source:HGNC Symbol;Acc:HGNC:19109]
ENSCJAG00000023060	NOVEL	protein_coding	ENSCJAG00000023060	chromosome:C_jacchus3.2.1:11:1:130397257:1	68274493	68275458	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7F1H0]
ENSCJAG00000015665	NOVEL	protein_coding	OR51G2	chromosome:C_jacchus3.2.1:11:1:130397257:1	68261656	68262674	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6XY94]
ENSCJAG00000021740	NOVEL	protein_coding	CAJA-T2R55	chromosome:C_jacchus3.2.1:9:1:124281992:1	10233037	10233981	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I770]
ENSCJAG00000021741	NOVEL	protein_coding	ENSCJAG00000021741	chromosome:C_jacchus3.2.1:9:1:124281992:1	10265039	10266045	D	Taste receptor type 2 {ECO:0000256|RuleBase:RU004424}  [Source:UniProtKB/TrEMBL;Acc:F7I768]
ENSCJAG00000015662	NOVEL	protein_coding	OR51A7	chromosome:C_jacchus3.2.1:11:1:130397257:1	68253951	68254998	D	Olfactory receptor, family 51, subfamily A, member 7 (Predicted) {ECO:0000313|EMBL:ABZ80283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028830}  [Source:UniProtKB/TrEMBL;Acc:B0VX98]
ENSCJAG00000021739	NOVEL	protein_coding	ENSCJAG00000021739	chromosome:C_jacchus3.2.1:9:1:124281992:1	9610248	9610665	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040909}  [Source:UniProtKB/TrEMBL;Acc:F7I245]
ENSCJAG00000034160	NOVEL	protein_coding	ENSCJAG00000034160	chromosome:C_jacchus3.2.1:11:1:130397257:1	68225273	68226136	D	<no descrition>
ENSCJAG00000023059	NOVEL	protein_coding	ENSCJAG00000023059	chromosome:C_jacchus3.2.1:11:1:130397257:1	68198272	68199204	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041592}  [Source:UniProtKB/TrEMBL;Acc:F7F1H4]
ENSCJAG00000032834	KNOWN_BY_PROJECTION	protein_coding	NDUFB10	chromosome:C_jacchus3.2.1:9:1:124281992:1	8816328	8816864	R	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa [Source:HGNC Symbol;Acc:HGNC:7696]
ENSCJAG00000023058	NOVEL	protein_coding	OR51S1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68174803	68175890	R	Olfactory receptor, family 51, subfamily S, member 1 (Predicted) {ECO:0000313|EMBL:ABZ80280.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041591}  [Source:UniProtKB/TrEMBL;Acc:B0VX95]
ENSCJAG00000021738	KNOWN	protein_coding	HIST4H4	chromosome:C_jacchus3.2.1:9:1:124281992:1	6718565	6718975	D	Histone H4 {ECO:0000256|RuleBase:RU000528}  [Source:UniProtKB/TrEMBL;Acc:F7FGL0]
ENSCJAG00000015647	NOVEL	protein_coding	OR51F1	chromosome:C_jacchus3.2.1:11:1:130397257:1	68114601	68115560	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:B0VX93]
ENSCJAG00000003012	KNOWN_BY_PROJECTION	protein_coding	ZNF106	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	1009743	1015345	R	zinc finger protein 106 [Source:HGNC Symbol;Acc:HGNC:12886]
ENSCJAG00000033047	NOVEL	protein_coding	ENSCJAG00000033047	chromosome:C_jacchus3.2.1:11:1:130397257:1	67989269	67990231	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6UGF6]
ENSCJAG00000023147	KNOWN_BY_PROJECTION	protein_coding	OR52M1	chromosome:C_jacchus3.2.1:11:1:130397257:1	67768691	67769644	D	olfactory receptor, family 52, subfamily M, member 1 [Source:HGNC Symbol;Acc:HGNC:15225]
ENSCJAG00000015315	KNOWN_BY_PROJECTION	protein_coding	ZG16B	chromosome:C_jacchus3.2.1:12:1:121768101:1	2766787	2769464	R	zymogen granule protein 16B [Source:HGNC Symbol;Acc:HGNC:30456]
ENSCJAG00000005372	KNOWN_BY_PROJECTION	protein_coding	ZNF510	scaffold:C_jacchus3.2.1:GL286268.1:1:47238:1	28602	33427	R	zinc finger protein 510 [Source:HGNC Symbol;Acc:HGNC:29161]
ENSCJAG00000018697	KNOWN_BY_PROJECTION	protein_coding	KLRG1	chromosome:C_jacchus3.2.1:9:1:124281992:1	21209150	21220604	D	killer cell lectin-like receptor subfamily G, member 1 [Source:HGNC Symbol;Acc:HGNC:6380]
ENSCJAG00000009792	KNOWN_BY_PROJECTION	protein_coding	FMO1	chromosome:C_jacchus3.2.1:18:1:47448759:1	35313989	35344720	R	flavin containing monooxygenase 1 [Source:HGNC Symbol;Acc:HGNC:3769]
ENSCJAG00000005447	NOVEL	protein_coding	ENSCJAG00000005447	scaffold:C_jacchus3.2.1:GL286579.1:1:35586:1	32346	33858	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009933}  [Source:UniProtKB/TrEMBL;Acc:H9KW75]
ENSCJAG00000034598	KNOWN_BY_PROJECTION	protein_coding	PRSS22	chromosome:C_jacchus3.2.1:12:1:121768101:1	2740411	2783930	D	protease, serine, 22 [Source:HGNC Symbol;Acc:HGNC:14368]
ENSCJAG00000034214	NOVEL	protein_coding	ENSCJAG00000034214	scaffold:C_jacchus3.2.1:ACFV01185473.1:1:6204:1	4456	4923	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022141}  [Source:UniProtKB/TrEMBL;Acc:H9KWW0]
ENSCJAG00000022445	NOVEL	protein_coding	ENSCJAG00000022445	chromosome:C_jacchus3.2.1:6:1:158406734:1	148429117	148429601	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041067}  [Source:UniProtKB/TrEMBL;Acc:F7FGH5]
ENSCJAG00000034693	NOVEL	pseudogene	ENSCJAG00000034693	scaffold:C_jacchus3.2.1:ACFV01178768.1:1:8708:1	6165	7118	D	<no descrition>
ENSCJAG00000023145	NOVEL	protein_coding	ENSCJAG00000023145	chromosome:C_jacchus3.2.1:11:1:130397257:1	67700312	67701232	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041673}  [Source:UniProtKB/TrEMBL;Acc:F7HA90]
ENSCJAG00000022443	KNOWN_BY_PROJECTION	protein_coding	GPR55	chromosome:C_jacchus3.2.1:6:1:158406734:1	147358884	147359834	R	G protein-coupled receptor 55 [Source:HGNC Symbol;Acc:HGNC:4511]
ENSCJAG00000033121	NOVEL	protein_coding	ENSCJAG00000033121	chromosome:C_jacchus3.2.1:11:1:130397257:1	67675117	67676070	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6X0I1]
ENSCJAG00000022441	KNOWN_BY_PROJECTION	protein_coding	S100A10	chromosome:C_jacchus3.2.1:6:1:158406734:1	144080556	144081171	R	S100 calcium binding protein A10 [Source:HGNC Symbol;Acc:HGNC:10487]
ENSCJAG00000031546	NOVEL	protein_coding	ENSCJAG00000031546	scaffold:C_jacchus3.2.1:GL289986.1:1:8076:1	4485	7149	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043214}  [Source:UniProtKB/TrEMBL;Acc:H9KY09]
ENSCJAG00000021797	NOVEL	protein_coding	ENSCJAG00000021797	scaffold:C_jacchus3.2.1:GL290302.1:1:7311:1	4089	4822	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040502}  [Source:UniProtKB/TrEMBL;Acc:H9KXP9]
ENSCJAG00000016321	KNOWN_BY_PROJECTION	protein_coding	ZNF74	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	221526	228478	D	zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
ENSCJAG00000012462	NOVEL	protein_coding	ENSCJAG00000012462	chromosome:C_jacchus3.2.1:6:1:158406734:1	133219195	133219380	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022817}  [Source:UniProtKB/TrEMBL;Acc:F7HWK7]
ENSCJAG00000022610	NOVEL	protein_coding	ENSCJAG00000022610	chromosome:C_jacchus3.2.1:11:1:130397257:1	64544394	64545325	R	60S ribosomal protein L6 {ECO:0000256|RuleBase:RU000662}  [Source:UniProtKB/TrEMBL;Acc:F7HAZ0]
ENSCJAG00000016349	NOVEL	protein_coding	ENSCJAG00000016349	scaffold:C_jacchus3.2.1:GL285929.1:1:11326:1	468	2073	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030081}  [Source:UniProtKB/TrEMBL;Acc:H9KX71]
ENSCJAG00000031300	KNOWN_BY_PROJECTION	protein_coding	RPL3L	chromosome:C_jacchus3.2.1:12:1:121768101:1	2643555	2657458	D	ribosomal protein L3-like [Source:HGNC Symbol;Acc:HGNC:10351]
ENSCJAG00000022088	NOVEL	protein_coding	ENSCJAG00000022088	chromosome:C_jacchus3.2.1:11:1:130397257:1	63624428	63625369	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040752}  [Source:UniProtKB/TrEMBL;Acc:F7IT94]
ENSCJAG00000017455	NOVEL	protein_coding	ENSCJAG00000017455	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	819468	832071	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032168}  [Source:UniProtKB/TrEMBL;Acc:H9KXB2]
ENSCJAG00000022554	NOVEL	processed_pseudogene	ENSCJAG00000022554	chromosome:C_jacchus3.2.1:1:1:210400635:1	152527105	152527584	D	<no descrition>
ENSCJAG00000022553	NOVEL	processed_pseudogene	ENSCJAG00000022553	chromosome:C_jacchus3.2.1:1:1:210400635:1	151265219	151265731	R	<no descrition>
ENSCJAG00000022713	NOVEL	processed_pseudogene	ENSCJAG00000022713	chromosome:C_jacchus3.2.1:1:1:210400635:1	135573786	135574055	R	<no descrition>
ENSCJAG00000022448	NOVEL	processed_pseudogene	ENSCJAG00000022448	chromosome:C_jacchus3.2.1:1:1:210400635:1	106774609	106774950	R	<no descrition>
ENSCJAG00000004900	KNOWN_BY_PROJECTION	protein_coding	IL17REL	scaffold:C_jacchus3.2.1:GL284711.1:1:53255:1	39111	42645	R	interleukin 17 receptor E-like [Source:HGNC Symbol;Acc:HGNC:33808]
ENSCJAG00000023391	NOVEL	processed_pseudogene	ENSCJAG00000023391	chromosome:C_jacchus3.2.1:1:1:210400635:1	95801491	95801985	R	<no descrition>
ENSCJAG00000015265	KNOWN_BY_PROJECTION	protein_coding	RNF151	chromosome:C_jacchus3.2.1:12:1:121768101:1	2630618	2632460	R	ring finger protein 151 [Source:HGNC Symbol;Acc:HGNC:23235]
ENSCJAG00000034210	NOVEL	protein_coding	ENSCJAG00000034210	scaffold:C_jacchus3.2.1:ACFV01201933.1:1:2309:1	1110	1939	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047339}  [Source:UniProtKB/TrEMBL;Acc:H9KY93]
ENSCJAG00000033961	KNOWN_BY_PROJECTION	protein_coding	NUS1	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	19897	20325	R	nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:21042]
ENSCJAG00000005260	NOVEL	protein_coding	ENSCJAG00000005260	scaffold:C_jacchus3.2.1:ACFV01177166.1:1:27564:1	411	18896	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009626}  [Source:UniProtKB/TrEMBL;Acc:H9KW62]
ENSCJAG00000021852	NOVEL	processed_pseudogene	ENSCJAG00000021852	chromosome:C_jacchus3.2.1:1:1:210400635:1	82273752	82274186	D	<no descrition>
ENSCJAG00000035318	KNOWN_BY_PROJECTION	protein_coding	SFPQ	chromosome:C_jacchus3.2.1:18:1:47448759:1	35250520	35251263	R	splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:HGNC:10774]
ENSCJAG00000021774	NOVEL	protein_coding	ENSCJAG00000021774	chromosome:C_jacchus3.2.1:1:1:210400635:1	165067342	165068320	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040479}  [Source:UniProtKB/TrEMBL;Acc:F7I4R1]
ENSCJAG00000031225	NOVEL	protein_coding	ENSCJAG00000031225	scaffold:C_jacchus3.2.1:GL285557.1:1:93827:1	50081	62780	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010583}  [Source:UniProtKB/TrEMBL;Acc:H9KWA0]
ENSCJAG00000018850	NOVEL	protein_coding	ENSCJAG00000018850	scaffold:C_jacchus3.2.1:ACFV01185274.1:1:5576:1	3174	5015	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035026}  [Source:UniProtKB/TrEMBL;Acc:H9KXG5]
ENSCJAG00000022539	NOVEL	protein_coding	ENSCJAG00000022539	chromosome:C_jacchus3.2.1:1:1:210400635:1	154888420	154889469	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041146}  [Source:UniProtKB/TrEMBL;Acc:F7DX65]
ENSCJAG00000022538	NOVEL	protein_coding	ENSCJAG00000022538	chromosome:C_jacchus3.2.1:1:1:210400635:1	152298527	152300012	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041145}  [Source:UniProtKB/TrEMBL;Acc:F7DX71]
ENSCJAG00000011152	NOVEL	pseudogene	ENSCJAG00000011152	scaffold:C_jacchus3.2.1:GL285805.1:1:15697:1	14227	14706	R	<no descrition>
ENSCJAG00000022537	NOVEL	protein_coding	ENSCJAG00000022537	chromosome:C_jacchus3.2.1:1:1:210400635:1	152199984	152200385	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041144}  [Source:UniProtKB/TrEMBL;Acc:F7DX76]
ENSCJAG00000022536	NOVEL	protein_coding	ENSCJAG00000022536	chromosome:C_jacchus3.2.1:1:1:210400635:1	151461691	151462065	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041143}  [Source:UniProtKB/TrEMBL;Acc:F7DX82]
ENSCJAG00000022535	NOVEL	protein_coding	ENSCJAG00000022535	chromosome:C_jacchus3.2.1:1:1:210400635:1	149744338	149744541	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041142}  [Source:UniProtKB/TrEMBL;Acc:F7DX86]
ENSCJAG00000022552	NOVEL	protein_coding	ENSCJAG00000022552	chromosome:C_jacchus3.2.1:1:1:210400635:1	151246173	151246692	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050471}  [Source:UniProtKB/TrEMBL;Acc:F7H3N3]
ENSCJAG00000002304	NOVEL	protein_coding	ENSCJAG00000002304	scaffold:C_jacchus3.2.1:GL286316.1:1:36525:1	6580	9283	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004143}  [Source:UniProtKB/TrEMBL;Acc:H9KVS0]
ENSCJAG00000022022	NOVEL	protein_coding	ENSCJAG00000022022	chromosome:C_jacchus3.2.1:1:1:210400635:1	149430860	149431162	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040692}  [Source:UniProtKB/TrEMBL;Acc:F7I4M7]
ENSCJAG00000022533	KNOWN_BY_PROJECTION	protein_coding	OR13D1	chromosome:C_jacchus3.2.1:1:1:210400635:1	147961659	147962663	D	olfactory receptor, family 13, subfamily D, member 1 [Source:HGNC Symbol;Acc:HGNC:14695]
ENSCJAG00000007767	NOVEL	protein_coding	ENSCJAG00000007767	scaffold:C_jacchus3.2.1:ACFV01189485.1:1:7661:1	5631	7285	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052354}  [Source:UniProtKB/TrEMBL;Acc:H9KYM7]
ENSCJAG00000022530	KNOWN_BY_PROJECTION	protein_coding	OR13C3	chromosome:C_jacchus3.2.1:1:1:210400635:1	147770209	147771320	R	olfactory receptor, family 13, subfamily C, member 3 [Source:HGNC Symbol;Acc:HGNC:14704]
ENSCJAG00000022531	NOVEL	protein_coding	ENSCJAG00000022531	chromosome:C_jacchus3.2.1:1:1:210400635:1	147840254	147841189	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7DXA8]
ENSCJAG00000034249	NOVEL	protein_coding	ENSCJAG00000034249	scaffold:C_jacchus3.2.1:ACFV01185522.1:1:11844:1	4638	8052	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045343}  [Source:UniProtKB/TrEMBL;Acc:H9KY45]
ENSCJAG00000022528	KNOWN	protein_coding	ACTL7A	chromosome:C_jacchus3.2.1:1:1:210400635:1	144706534	144708018	R	Actin-like protein 7A {ECO:0000313|EMBL:JAB47482.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041135}  [Source:UniProtKB/TrEMBL;Acc:F7DXB9]
ENSCJAG00000017454	NOVEL	protein_coding	ENSCJAG00000017454	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	784646	787672	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032139}  [Source:UniProtKB/TrEMBL;Acc:H9KXB1]
ENSCJAG00000010651	KNOWN	protein_coding	SLC25A51	chromosome:C_jacchus3.2.1:1:1:210400635:1	139837824	139838717	R	Solute carrier family 25 member 51 {ECO:0000313|EMBL:JAB03359.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019619}  [Source:UniProtKB/TrEMBL;Acc:F6PGN7]
ENSCJAG00000010202	KNOWN_BY_PROJECTION	protein_coding	CCIN	chromosome:C_jacchus3.2.1:1:1:210400635:1	137996395	137998337	D	calicin [Source:HGNC Symbol;Acc:HGNC:1568]
ENSCJAG00000001687	KNOWN_BY_PROJECTION	protein_coding	HLA-DRB5	scaffold:C_jacchus3.2.1:GL286271.1:1:51287:1	3330	7928	R	major histocompatibility complex, class II, DR beta 5 [Source:HGNC Symbol;Acc:HGNC:4953]
ENSCJAG00000022720	NOVEL	protein_coding	ENSCJAG00000022720	chromosome:C_jacchus3.2.1:1:1:210400635:1	137830581	137831540	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7G6Q2]
ENSCJAG00000031763	NOVEL	processed_pseudogene	ENSCJAG00000031763	chromosome:C_jacchus3.2.1:13:1:117903854:1	83517711	83518046	R	<no descrition>
ENSCJAG00000015582	NOVEL	pseudogene	ENSCJAG00000015582	scaffold:C_jacchus3.2.1:ACFV01201015.1:1:2196:1	1552	1901	R	<no descrition>
ENSCJAG00000022017	NOVEL	processed_pseudogene	ENSCJAG00000022017	chromosome:C_jacchus3.2.1:13:1:117903854:1	47972251	47973447	R	<no descrition>
ENSCJAG00000034416	NOVEL	protein_coding	ENSCJAG00000034416	scaffold:C_jacchus3.2.1:ACFV01186774.1:1:8574:1	1227	7538	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040886}  [Source:UniProtKB/TrEMBL;Acc:H9KXR9]
ENSCJAG00000034979	NOVEL	processed_pseudogene	ENSCJAG00000034979	chromosome:C_jacchus3.2.1:13:1:117903854:1	43319926	43320769	D	<no descrition>
ENSCJAG00000018961	NOVEL	protein_coding	ENSCJAG00000018961	scaffold:C_jacchus3.2.1:ACFV01201978.1:1:2607:1	1660	2554	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035222}  [Source:UniProtKB/TrEMBL;Acc:H9KXH4]
ENSCJAG00000022135	NOVEL	processed_pseudogene	ENSCJAG00000022135	chromosome:C_jacchus3.2.1:13:1:117903854:1	31386253	31386750	D	<no descrition>
ENSCJAG00000022717	NOVEL	protein_coding	ENSCJAG00000022717	chromosome:C_jacchus3.2.1:1:1:210400635:1	137747465	137748511	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7G6S5]
ENSCJAG00000010720	NOVEL	processed_pseudogene	ENSCJAG00000010720	chromosome:C_jacchus3.2.1:13:1:117903854:1	27488072	27488347	D	<no descrition>
ENSCJAG00000021801	NOVEL	processed_pseudogene	ENSCJAG00000021801	chromosome:C_jacchus3.2.1:13:1:117903854:1	12951039	12951827	R	<no descrition>
ENSCJAG00000023325	NOVEL	processed_pseudogene	ENSCJAG00000023325	chromosome:C_jacchus3.2.1:13:1:117903854:1	7029606	7030124	D	<no descrition>
ENSCJAG00000022715	KNOWN	protein_coding	KIAA1161	chromosome:C_jacchus3.2.1:1:1:210400635:1	136142586	136144730	R	Putative family 31 glucosidase KIAA1161 {ECO:0000313|EMBL:JAB02155.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041308}  [Source:UniProtKB/TrEMBL;Acc:F7G727]
ENSCJAG00000011120	KNOWN_BY_PROJECTION	protein_coding	KLRB1	scaffold:C_jacchus3.2.1:ACFV01187415.1:1:8292:1	3044	8053	R	killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
ENSCJAG00000023333	NOVEL	protein_coding	ENSCJAG00000023333	chromosome:C_jacchus3.2.1:13:1:117903854:1	80368091	80369186	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041839}  [Source:UniProtKB/TrEMBL;Acc:F7DTZ8]
ENSCJAG00000022412	NOVEL	protein_coding	ENSCJAG00000022412	chromosome:C_jacchus3.2.1:1:1:210400635:1	120895922	120896392	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041034}  [Source:UniProtKB/TrEMBL;Acc:F7FGT5]
ENSCJAG00000013310	NOVEL	protein_coding	ENSCJAG00000013310	scaffold:C_jacchus3.2.1:GL286361.1:1:16765:1	4272	5319	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024423}  [Source:UniProtKB/TrEMBL;Acc:H9KWZ7]
ENSCJAG00000007707	KNOWN_BY_PROJECTION	protein_coding	MPRIP	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	135663	147854	R	myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
ENSCJAG00000016358	KNOWN	protein_coding	KLHL22	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	261657	280796	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030122}  [Source:UniProtKB/TrEMBL;Acc:H9KX74]
ENSCJAG00000015221	KNOWN_BY_PROJECTION	protein_coding	NOXO1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2619651	2622167	D	NADPH oxidase organizer 1 [Source:HGNC Symbol;Acc:HGNC:19404]
ENSCJAG00000018259	NOVEL	pseudogene	ENSCJAG00000018259	scaffold:C_jacchus3.2.1:ACFV01200840.1:1:3141:1	1499	1818	D	<no descrition>
ENSCJAG00000005243	NOVEL	protein_coding	ENSCJAG00000005243	scaffold:C_jacchus3.2.1:ACFV01187035.1:1:7489:1	1352	3971	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009575}  [Source:UniProtKB/TrEMBL;Acc:H9KW59]
ENSCJAG00000009012	NOVEL	pseudogene	ENSCJAG00000009012	scaffold:C_jacchus3.2.1:ACFV01195031.1:1:2194:1	1484	1892	D	<no descrition>
ENSCJAG00000003089	NOVEL	protein_coding	ENSCJAG00000003089	scaffold:C_jacchus3.2.1:ACFV01199283.1:1:2636:1	1	2060	R	<no descrition>
ENSCJAG00000012485	NOVEL	pseudogene	ENSCJAG00000012485	scaffold:C_jacchus3.2.1:GL286471.1:1:4345:1	187	570	R	<no descrition>
ENSCJAG00000012616	NOVEL	protein_coding	ENSCJAG00000012616	scaffold:C_jacchus3.2.1:GL284886.1:1:151441:1	18241	18928	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049942}  [Source:UniProtKB/TrEMBL;Acc:H9KYF5]
ENSCJAG00000005363	NOVEL	protein_coding	ENSCJAG00000005363	scaffold:C_jacchus3.2.1:GL286469.1:1:247870:1	12376	19274	R	Transporter {ECO:0000256|RuleBase:RU003732}  [Source:UniProtKB/TrEMBL;Acc:H9KYG8]
ENSCJAG00000020322	NOVEL	pseudogene	ENSCJAG00000020322	scaffold:C_jacchus3.2.1:GL286383.1:1:13054:1	4176	5704	D	<no descrition>
ENSCJAG00000023394	NOVEL	protein_coding	ENSCJAG00000023394	chromosome:C_jacchus3.2.1:1:1:210400635:1	100727845	100728315	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041890}  [Source:UniProtKB/TrEMBL;Acc:F7HF19]
ENSCJAG00000023266	NOVEL	protein_coding	ENSCJAG00000023266	chromosome:C_jacchus3.2.1:13:1:117903854:1	58972307	58972579	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041778}  [Source:UniProtKB/TrEMBL;Acc:F7FSW3]
ENSCJAG00000015178	KNOWN	protein_coding	NTHL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2555469	2559427	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027980}  [Source:UniProtKB/TrEMBL;Acc:F7H9D2]
ENSCJAG00000023393	NOVEL	protein_coding	ENSCJAG00000023393	chromosome:C_jacchus3.2.1:1:1:210400635:1	100419466	100419762	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041889}  [Source:UniProtKB/TrEMBL;Acc:F7HF46]
ENSCJAG00000012247	NOVEL	protein_coding	ENSCJAG00000012247	scaffold:C_jacchus3.2.1:GL284886.1:1:151441:1	28050	38839	R	Metallothionein {ECO:0000256|RuleBase:RU000621}  [Source:UniProtKB/TrEMBL;Acc:H9KWX5]
ENSCJAG00000023166	KNOWN_BY_PROJECTION	protein_coding	CETN1	chromosome:C_jacchus3.2.1:13:1:117903854:1	57607273	57608535	R	centrin, EF-hand protein, 1 [Source:HGNC Symbol;Acc:HGNC:1866]
ENSCJAG00000023392	NOVEL	protein_coding	ENSCJAG00000023392	chromosome:C_jacchus3.2.1:1:1:210400635:1	97295909	97297272	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041888}  [Source:UniProtKB/TrEMBL;Acc:F7HF50]
ENSCJAG00000008492	NOVEL	protein_coding	ENSCJAG00000008492	scaffold:C_jacchus3.2.1:GL286307.1:1:38943:1	21117	21827	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015625}  [Source:UniProtKB/TrEMBL;Acc:H9KWI8]
ENSCJAG00000023097	KNOWN_BY_PROJECTION	protein_coding	SNRPB	chromosome:C_jacchus3.2.1:13:1:117903854:1	52439951	52440673	R	small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:HGNC:11153]
ENSCJAG00000006617	KNOWN_BY_PROJECTION	protein_coding	SLC5A4	scaffold:C_jacchus3.2.1:GL284748.1:1:139724:1	13119	14688	R	solute carrier family 5 (glucose activated ion channel), member 4 [Source:HGNC Symbol;Acc:HGNC:11039]
ENSCJAG00000013590	NOVEL	protein_coding	ENSCJAG00000013590	scaffold:C_jacchus3.2.1:GL285905.1:1:65634:1	5270	19390	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024995}  [Source:UniProtKB/TrEMBL;Acc:H9KX06]
ENSCJAG00000022590	KNOWN_BY_PROJECTION	protein_coding	MC5R	chromosome:C_jacchus3.2.1:13:1:117903854:1	42932045	42933326	R	melanocortin 5 receptor [Source:HGNC Symbol;Acc:HGNC:6933]
ENSCJAG00000012134	NOVEL	pseudogene	ENSCJAG00000012134	scaffold:C_jacchus3.2.1:GL286457.1:1:128012:1	19850	21201	R	<no descrition>
ENSCJAG00000022900	NOVEL	protein_coding	ENSCJAG00000022900	chromosome:C_jacchus3.2.1:1:1:210400635:1	85972846	85973442	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042080}  [Source:UniProtKB/TrEMBL;Acc:F6RGJ8]
ENSCJAG00000020538	NOVEL	protein_coding	ENSCJAG00000020538	scaffold:C_jacchus3.2.1:GL286377.1:1:14110:1	4388	7149	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038153}  [Source:UniProtKB/TrEMBL;Acc:H9KXL6]
ENSCJAG00000015047	KNOWN	protein_coding	TRAF7	chromosome:C_jacchus3.2.1:12:1:121768101:1	2426255	2444936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027736}  [Source:UniProtKB/TrEMBL;Acc:F7DTF2]
ENSCJAG00000031596	NOVEL	protein_coding	ENSCJAG00000031596	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1675348	1699299	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004998}  [Source:UniProtKB/TrEMBL;Acc:H9KVV8]
ENSCJAG00000033498	NOVEL	protein_coding	ENSCJAG00000033498	chromosome:C_jacchus3.2.1:13:1:117903854:1	28823960	28824271	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043331}  [Source:UniProtKB/TrEMBL;Acc:F7HM40]
ENSCJAG00000035158	NOVEL	protein_coding	ENSCJAG00000035158	scaffold:C_jacchus3.2.1:ACFV01182235.1:1:12232:1	11215	11714	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047186}  [Source:UniProtKB/TrEMBL;Acc:H9KY84]
ENSCJAG00000034110	NOVEL	protein_coding	ENSCJAG00000034110	scaffold:C_jacchus3.2.1:GL286615.1:1:24086:1	7658	8753	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052051}  [Source:UniProtKB/TrEMBL;Acc:H9KYK9]
ENSCJAG00000021766	KNOWN	protein_coding	PNMA2	chromosome:C_jacchus3.2.1:13:1:117903854:1	11690215	11691309	D	Paraneoplastic antigen Ma2 {ECO:0000313|EMBL:JAB02392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040471}  [Source:UniProtKB/TrEMBL;Acc:F7I4S2]
ENSCJAG00000012704	KNOWN_BY_PROJECTION	protein_coding	PLIN2	scaffold:C_jacchus3.2.1:GL286277.1:1:51577:1	27356	29758	R	perilipin 2 [Source:HGNC Symbol;Acc:HGNC:248]
ENSCJAG00000023328	NOVEL	protein_coding	ENSCJAG00000023328	chromosome:C_jacchus3.2.1:13:1:117903854:1	7453153	7455090	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041834}  [Source:UniProtKB/TrEMBL;Acc:F7DU45]
ENSCJAG00000012667	KNOWN_BY_PROJECTION	protein_coding	CBFB	scaffold:C_jacchus3.2.1:GL286338.1:1:20936:1	15279	15737	R	core-binding factor, beta subunit [Source:HGNC Symbol;Acc:HGNC:1539]
ENSCJAG00000035050	NOVEL	protein_coding	ENSCJAG00000035050	scaffold:C_jacchus3.2.1:GL286579.1:1:35586:1	9919	21608	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011726}  [Source:UniProtKB/TrEMBL;Acc:H9KWB7]
ENSCJAG00000018748	NOVEL	protein_coding	ENSCJAG00000018748	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	427588	427959	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034825}  [Source:UniProtKB/TrEMBL;Acc:H9KXF6]
ENSCJAG00000034403	NOVEL	protein_coding	ENSCJAG00000034403	scaffold:C_jacchus3.2.1:GL288892.1:1:12703:1	3811	5700	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013531}  [Source:UniProtKB/TrEMBL;Acc:H9KWD2]
ENSCJAG00000022174	KNOWN_BY_PROJECTION	protein_coding	TRMT12	chromosome:C_jacchus3.2.1:16:1:96796970:1	70345922	70348020	R	tRNA methyltransferase 12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26091]
ENSCJAG00000023324	NOVEL	protein_coding	ENSCJAG00000023324	chromosome:C_jacchus3.2.1:16:1:96796970:1	57870442	57871746	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041830}  [Source:UniProtKB/TrEMBL;Acc:F7DU78]
ENSCJAG00000012264	NOVEL	pseudogene	ENSCJAG00000012264	scaffold:C_jacchus3.2.1:GL284885.1:1:185441:1	28459	29116	R	<no descrition>
ENSCJAG00000009424	NOVEL	protein_coding	ENSCJAG00000009424	scaffold:C_jacchus3.2.1:GL285437.1:1:151650:1	61452	62891	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017256}  [Source:UniProtKB/TrEMBL;Acc:H9KWL4]
ENSCJAG00000021519	NOVEL	protein_coding	ENSCJAG00000021519	scaffold:C_jacchus3.2.1:GL288882.1:1:10617:1	8170	9457	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040066}  [Source:UniProtKB/TrEMBL;Acc:H9KXM8]
ENSCJAG00000003621	NOVEL	protein_coding	ENSCJAG00000003621	scaffold:C_jacchus3.2.1:GL286585.1:1:19209:1	7257	8797	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006559}  [Source:UniProtKB/TrEMBL;Acc:H9KW13]
ENSCJAG00000033766	NOVEL	protein_coding	ENSCJAG00000033766	chromosome:C_jacchus3.2.1:16:1:96796970:1	52708116	52708631	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044928}  [Source:UniProtKB/TrEMBL;Acc:F7GQG0]
ENSCJAG00000021728	NOVEL	protein_coding	ENSCJAG00000021728	chromosome:C_jacchus3.2.1:16:1:96796970:1	51115221	51115622	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040440}  [Source:UniProtKB/TrEMBL;Acc:F7I9J2]
ENSCJAG00000036990	NOVEL	protein_coding	ENSCJAG00000036990	chromosome:C_jacchus3.2.1:16:1:96796970:1	50477344	50477799	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052320}  [Source:UniProtKB/TrEMBL;Acc:F7HQY7]
ENSCJAG00000023157	NOVEL	protein_coding	ENSCJAG00000023157	chromosome:C_jacchus3.2.1:16:1:96796970:1	34628453	34628893	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7HA71]
ENSCJAG00000003557	NOVEL	processed_pseudogene	ENSCJAG00000003557	chromosome:C_jacchus3.2.1:7:1:155834243:1	8584730	8585227	D	<no descrition>
ENSCJAG00000023299	NOVEL	processed_pseudogene	ENSCJAG00000023299	chromosome:C_jacchus3.2.1:11:1:130397257:1	130218093	130218941	R	<no descrition>
ENSCJAG00000021899	NOVEL	processed_pseudogene	ENSCJAG00000021899	chromosome:C_jacchus3.2.1:11:1:130397257:1	119049300	119049683	D	<no descrition>
ENSCJAG00000021861	NOVEL	processed_pseudogene	ENSCJAG00000021861	chromosome:C_jacchus3.2.1:11:1:130397257:1	118557982	118558254	R	<no descrition>
ENSCJAG00000002322	NOVEL	protein_coding	ENSCJAG00000002322	chromosome:C_jacchus3.2.1:7:1:155834243:1	45850348	45850900	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004180}  [Source:UniProtKB/TrEMBL;Acc:F7AQF5]
ENSCJAG00000036740	NOVEL	protein_coding	ENSCJAG00000036740	chromosome:C_jacchus3.2.1:7:1:155834243:1	48403249	48403515	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052195}  [Source:UniProtKB/TrEMBL;Acc:F7HVQ7]
ENSCJAG00000035125	NOVEL	processed_pseudogene	ENSCJAG00000035125	chromosome:C_jacchus3.2.1:11:1:130397257:1	118341094	118341384	D	<no descrition>
ENSCJAG00000032400	NOVEL	pseudogene	ENSCJAG00000032400	scaffold:C_jacchus3.2.1:ACFV01192820.1:1:4300:1	1	2284	D	<no descrition>
ENSCJAG00000023167	NOVEL	protein_coding	ENSCJAG00000023167	chromosome:C_jacchus3.2.1:7:1:155834243:1	42387787	42388572	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041689}  [Source:UniProtKB/TrEMBL;Acc:F7HA27]
ENSCJAG00000022205	NOVEL	protein_coding	ENSCJAG00000022205	chromosome:C_jacchus3.2.1:7:1:155834243:1	41872188	41872397	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040857}  [Source:UniProtKB/TrEMBL;Acc:F7IBL1]
ENSCJAG00000037014	NOVEL	protein_coding	ENSCJAG00000037014	chromosome:C_jacchus3.2.1:7:1:155834243:1	36682812	36683222	R	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7ILE2]
ENSCJAG00000031129	NOVEL	protein_coding	ENSCJAG00000031129	scaffold:C_jacchus3.2.1:ACFV01185121.1:1:8977:1	6606	7474	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051766}  [Source:UniProtKB/TrEMBL;Acc:H9KYK1]
ENSCJAG00000013207	NOVEL	pseudogene	ENSCJAG00000013207	scaffold:C_jacchus3.2.1:GL287727.1:1:4542:1	3410	4457	D	<no descrition>
ENSCJAG00000011509	NOVEL	protein_coding	ENSCJAG00000011509	chromosome:C_jacchus3.2.1:7:1:155834243:1	28980051	28981188	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021158}  [Source:UniProtKB/TrEMBL;Acc:F6SLQ9]
ENSCJAG00000034591	NOVEL	protein_coding	ENSCJAG00000034591	chromosome:C_jacchus3.2.1:7:1:155834243:1	24743173	24743403	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050692}  [Source:UniProtKB/TrEMBL;Acc:F7GDL2]
ENSCJAG00000011253	NOVEL	protein_coding	ENSCJAG00000011253	scaffold:C_jacchus3.2.1:ACFV01192571.1:1:4014:1	83	520	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020724}  [Source:UniProtKB/TrEMBL;Acc:H9KWT1]
ENSCJAG00000022802	KNOWN	protein_coding	LDOC1L	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	171438	172867	R	Protein LDOC1L {ECO:0000313|EMBL:JAB05903.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041385}  [Source:UniProtKB/TrEMBL;Acc:H9KXU2]
ENSCJAG00000022124	NOVEL	protein_coding	ENSCJAG00000022124	chromosome:C_jacchus3.2.1:7:1:155834243:1	23314531	23314962	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040783}  [Source:UniProtKB/TrEMBL;Acc:F7IQS7]
ENSCJAG00000022126	NOVEL	protein_coding	ENSCJAG00000022126	chromosome:C_jacchus3.2.1:7:1:155834243:1	19070634	19070942	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040785}  [Source:UniProtKB/TrEMBL;Acc:F7IQS5]
ENSCJAG00000011880	NOVEL	protein_coding	ENSCJAG00000011880	scaffold:C_jacchus3.2.1:ACFV01189496.1:1:7747:1	5664	7034	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045132}  [Source:UniProtKB/TrEMBL;Acc:H9KY40]
ENSCJAG00000021859	NOVEL	protein_coding	ENSCJAG00000021859	chromosome:C_jacchus3.2.1:11:1:130397257:1	118668026	118668337	D	<no descrition>
ENSCJAG00000036767	NOVEL	protein_coding	ENSCJAG00000036767	chromosome:C_jacchus3.2.1:11:1:130397257:1	118658693	118659284	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052232}  [Source:UniProtKB/TrEMBL;Acc:F7ILF2]
ENSCJAG00000021865	NOVEL	protein_coding	ENSCJAG00000021865	chromosome:C_jacchus3.2.1:11:1:130397257:1	116798824	116799714	D	Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}  [Source:UniProtKB/TrEMBL;Acc:F7IQY7]
ENSCJAG00000021185	NOVEL	pseudogene	ENSCJAG00000021185	scaffold:C_jacchus3.2.1:ACFV01198047.1:1:2279:1	296	924	D	<no descrition>
ENSCJAG00000022509	KNOWN_BY_PROJECTION	protein_coding	OR4D9	chromosome:C_jacchus3.2.1:11:1:130397257:1	115039676	115040620	D	olfactory receptor, family 4, subfamily D, member 9 [Source:HGNC Symbol;Acc:HGNC:15178]
ENSCJAG00000017401	NOVEL	protein_coding	ENSCJAG00000017401	scaffold:C_jacchus3.2.1:ACFV01200385.1:1:2408:1	876	1307	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032056}  [Source:UniProtKB/TrEMBL;Acc:H9KXA8]
ENSCJAG00000022661	KNOWN_BY_PROJECTION	protein_coding	OR5B12	chromosome:C_jacchus3.2.1:11:1:130397257:1	114249056	114250109	R	olfactory receptor, family 5, subfamily B, member 12 [Source:HGNC Symbol;Acc:HGNC:15432]
ENSCJAG00000022660	KNOWN_BY_PROJECTION	protein_coding	OR5B21	chromosome:C_jacchus3.2.1:11:1:130397257:1	114284759	114285691	R	olfactory receptor, family 5, subfamily B, member 21 [Source:HGNC Symbol;Acc:HGNC:19616]
ENSCJAG00000022658	KNOWN_BY_PROJECTION	protein_coding	OR5AN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	114916651	114917622	R	olfactory receptor, family 5, subfamily AN, member 1 [Source:HGNC Symbol;Acc:HGNC:15255]
ENSCJAG00000022664	KNOWN_BY_PROJECTION	protein_coding	OR5B17	chromosome:C_jacchus3.2.1:11:1:130397257:1	114137051	114137992	R	olfactory receptor, family 5, subfamily B, member 17 [Source:HGNC Symbol;Acc:HGNC:15267]
ENSCJAG00000022666	KNOWN_BY_PROJECTION	protein_coding	OR10W1	chromosome:C_jacchus3.2.1:11:1:130397257:1	114073376	114074846	R	olfactory receptor, family 10, subfamily W, member 1 [Source:HGNC Symbol;Acc:HGNC:15139]
ENSCJAG00000008467	NOVEL	protein_coding	ENSCJAG00000008467	chromosome:C_jacchus3.2.1:11:1:130397257:1	113999985	114000962	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7DDG2]
ENSCJAG00000013553	NOVEL	protein_coding	ENSCJAG00000013553	scaffold:C_jacchus3.2.1:GL285947.1:1:23386:1	12227	12661	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024915}  [Source:UniProtKB/TrEMBL;Acc:H9KX01]
ENSCJAG00000008468	KNOWN_BY_PROJECTION	protein_coding	OR9Q1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113975782	113976726	D	olfactory receptor, family 9, subfamily Q, member 1 [Source:HGNC Symbol;Acc:HGNC:14724]
ENSCJAG00000022670	NOVEL	protein_coding	ENSCJAG00000022670	chromosome:C_jacchus3.2.1:11:1:130397257:1	113904083	113905090	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAR7]
ENSCJAG00000022669	KNOWN_BY_PROJECTION	protein_coding	OR9I1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113916311	113917255	R	olfactory receptor, family 9, subfamily I, member 1 [Source:HGNC Symbol;Acc:HGNC:14718]
ENSCJAG00000022668	NOVEL	protein_coding	ENSCJAG00000022668	chromosome:C_jacchus3.2.1:11:1:130397257:1	113939644	113940594	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAS1]
ENSCJAG00000015015	KNOWN_BY_PROJECTION	protein_coding	BRICD5	chromosome:C_jacchus3.2.1:12:1:121768101:1	2384946	2386661	D	BRICHOS domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28309]
ENSCJAG00000022671	NOVEL	protein_coding	ENSCJAG00000022671	chromosome:C_jacchus3.2.1:11:1:130397257:1	113869923	113870924	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAR5]
ENSCJAG00000018846	KNOWN	protein_coding	MFAP5	chromosome:C_jacchus3.2.1:9:1:124281992:1	20834634	20853728	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035001}  [Source:UniProtKB/TrEMBL;Acc:F7IIE9]
ENSCJAG00000001964	NOVEL	protein_coding	ENSCJAG00000001964	scaffold:C_jacchus3.2.1:ACFV01188583.1:1:7009:1	1315	5762	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003561}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ4]
ENSCJAG00000009633	KNOWN	protein_coding	METTL13	chromosome:C_jacchus3.2.1:18:1:47448759:1	34866098	34882117	R	Methyltransferase-like protein 13 isoform 1 {ECO:0000313|EMBL:JAB09425.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017694}  [Source:UniProtKB/TrEMBL;Acc:F7IRD0]
ENSCJAG00000033692	NOVEL	protein_coding	ENSCJAG00000033692	scaffold:C_jacchus3.2.1:GL286359.1:1:20484:1	16257	17053	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042612}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ7]
ENSCJAG00000015000	KNOWN	protein_coding	E4F1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2365734	2376429	R	Transcription factor E4F1 {ECO:0000313|EMBL:JAB38590.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043253}  [Source:UniProtKB/TrEMBL;Acc:F7IAF1]
ENSCJAG00000015592	NOVEL	protein_coding	ENSCJAG00000015592	scaffold:C_jacchus3.2.1:GL289258.1:1:10841:1	241	1935	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033699}  [Source:UniProtKB/TrEMBL;Acc:H9KXD0]
ENSCJAG00000022673	NOVEL	protein_coding	ENSCJAG00000022673	chromosome:C_jacchus3.2.1:11:1:130397257:1	113008736	113009250	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041266}  [Source:UniProtKB/TrEMBL;Acc:F7HAR2]
ENSCJAG00000032648	NOVEL	protein_coding	ENSCJAG00000032648	scaffold:C_jacchus3.2.1:ACFV01178635.1:1:17227:1	9083	10548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048125}  [Source:UniProtKB/TrEMBL;Acc:H9KYB2]
ENSCJAG00000022675	NOVEL	protein_coding	ENSCJAG00000022675	chromosome:C_jacchus3.2.1:11:1:130397257:1	112717622	112718431	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAQ8]
ENSCJAG00000021802	NOVEL	processed_pseudogene	ENSCJAG00000021802	chromosome:C_jacchus3.2.1:10:1:132174527:1	100580129	100580608	D	<no descrition>
ENSCJAG00000003883	NOVEL	protein_coding	ENSCJAG00000003883	scaffold:C_jacchus3.2.1:ACFV01178635.1:1:17227:1	4437	7142	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007090}  [Source:UniProtKB/TrEMBL;Acc:H9KW27]
ENSCJAG00000022104	NOVEL	processed_pseudogene	ENSCJAG00000022104	chromosome:C_jacchus3.2.1:10:1:132174527:1	95691186	95692664	R	<no descrition>
ENSCJAG00000023150	NOVEL	processed_pseudogene	ENSCJAG00000023150	chromosome:C_jacchus3.2.1:10:1:132174527:1	93017070	93017558	D	<no descrition>
ENSCJAG00000031395	NOVEL	processed_pseudogene	ENSCJAG00000031395	chromosome:C_jacchus3.2.1:10:1:132174527:1	60006559	60006888	R	<no descrition>
ENSCJAG00000023222	NOVEL	processed_pseudogene	ENSCJAG00000023222	chromosome:C_jacchus3.2.1:10:1:132174527:1	46820174	46820629	R	<no descrition>
ENSCJAG00000032672	NOVEL	protein_coding	ENSCJAG00000032672	chromosome:C_jacchus3.2.1:11:1:130397257:1	7602474	7603427	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040986}  [Source:UniProtKB/TrEMBL;Acc:F7IT22]
ENSCJAG00000035411	NOVEL	protein_coding	ENSCJAG00000035411	chromosome:C_jacchus3.2.1:11:1:130397257:1	7596232	7597185	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040985}  [Source:UniProtKB/TrEMBL;Acc:F7IT24]
ENSCJAG00000007778	NOVEL	protein_coding	ENSCJAG00000007778	scaffold:C_jacchus3.2.1:GL284739.1:1:122480:1	91879	92937	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014431}  [Source:UniProtKB/TrEMBL;Acc:H9KWG1]
ENSCJAG00000003721	NOVEL	pseudogene	ENSCJAG00000003721	scaffold:C_jacchus3.2.1:GL286209.1:1:241923:1	204238	204590	D	<no descrition>
ENSCJAG00000022371	NOVEL	protein_coding	ENSCJAG00000022371	chromosome:C_jacchus3.2.1:10:1:132174527:1	128046848	128047054	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041000}  [Source:UniProtKB/TrEMBL;Acc:F7FV69]
ENSCJAG00000017288	KNOWN	protein_coding	MOAP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	118779408	118781555	R	Modulator of apoptosis 1 {ECO:0000313|EMBL:JAB31882.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050084}  [Source:UniProtKB/TrEMBL;Acc:F7F0C9]
ENSCJAG00000021921	NOVEL	protein_coding	ENSCJAG00000021921	chromosome:C_jacchus3.2.1:10:1:132174527:1	114692863	114693524	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040605}  [Source:UniProtKB/TrEMBL;Acc:F7IGI2]
ENSCJAG00000018856	KNOWN_BY_PROJECTION	protein_coding	AICDA	chromosome:C_jacchus3.2.1:9:1:124281992:1	20792349	20802444	R	activation-induced cytidine deaminase [Source:HGNC Symbol;Acc:HGNC:13203]
ENSCJAG00000021432	NOVEL	protein_coding	ENSCJAG00000021432	chromosome:C_jacchus3.2.1:10:1:132174527:1	99038441	99039137	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F6T0P0]
ENSCJAG00000014805	KNOWN_BY_PROJECTION	protein_coding	ADAM20	chromosome:C_jacchus3.2.1:10:1:132174527:1	95754177	95756601	R	ADAM metallopeptidase domain 20 [Source:HGNC Symbol;Acc:HGNC:199]
ENSCJAG00000022096	NOVEL	protein_coding	ENSCJAG00000022096	chromosome:C_jacchus3.2.1:10:1:132174527:1	95729955	95730341	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040760}  [Source:UniProtKB/TrEMBL;Acc:F7IT66]
ENSCJAG00000022097	NOVEL	protein_coding	ENSCJAG00000022097	chromosome:C_jacchus3.2.1:10:1:132174527:1	95504234	95506459	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040761}  [Source:UniProtKB/TrEMBL;Acc:F7IT65]
ENSCJAG00000022928	NOVEL	protein_coding	RPS15	chromosome:C_jacchus3.2.1:10:1:132174527:1	78416826	78417242	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041489}  [Source:UniProtKB/TrEMBL;Acc:F7H036]
ENSCJAG00000022927	KNOWN_BY_PROJECTION	protein_coding	VMA21	chromosome:C_jacchus3.2.1:10:1:132174527:1	76218172	76218477	R	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:22082]
ENSCJAG00000022557	NOVEL	protein_coding	ENSCJAG00000022557	chromosome:C_jacchus3.2.1:10:1:132174527:1	71670801	71671286	D	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7DX15]
ENSCJAG00000012179	KNOWN	protein_coding	FKBP10	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	329544	339877	R	Peptidyl-prolyl cis-trans isomerase FKBP10 {ECO:0000313|EMBL:JAB32157.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049400}  [Source:UniProtKB/TrEMBL;Acc:H9KYE2]
ENSCJAG00000022556	KNOWN_BY_PROJECTION	protein_coding	RPL10L	chromosome:C_jacchus3.2.1:10:1:132174527:1	71166352	71167155	R	ribosomal protein L10-like [Source:HGNC Symbol;Acc:HGNC:17976]
ENSCJAG00000035428	KNOWN_BY_PROJECTION	protein_coding	GPR33	chromosome:C_jacchus3.2.1:10:1:132174527:1	55701857	55702855	R	G protein-coupled receptor 33 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:4489]
ENSCJAG00000014986	KNOWN	protein_coding	ECI1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2349330	2428395	D	Enoyl-CoA delta isomerase 1, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB05368.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027609}  [Source:UniProtKB/TrEMBL;Acc:F7H4L8]
ENSCJAG00000016103	NOVEL	protein_coding	ENSCJAG00000016103	chromosome:C_jacchus3.2.1:10:1:132174527:1	64039190	64039603	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029638}  [Source:UniProtKB/TrEMBL;Acc:F7HRT6]
ENSCJAG00000037433	KNOWN_BY_PROJECTION	protein_coding	CLEC6A	chromosome:C_jacchus3.2.1:9:1:124281992:1	20565837	20596374	D	C-type lectin domain family 6, member A [Source:HGNC Symbol;Acc:HGNC:14556]
ENSCJAG00000009550	KNOWN	protein_coding	DNM3	chromosome:C_jacchus3.2.1:18:1:47448759:1	34267641	34826354	R	Dynamin-3 isoform a {ECO:0000313|EMBL:JAB21654.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017634}  [Source:UniProtKB/TrEMBL;Acc:F7HY82]
ENSCJAG00000014969	KNOWN	protein_coding	RNPS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2334875	2347980	D	RNA-binding protein with serine-rich domain 1 {ECO:0000313|EMBL:JAB07918.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027588}  [Source:UniProtKB/TrEMBL;Acc:F7HF91]
ENSCJAG00000031842	NOVEL	protein_coding	ENSCJAG00000031842	scaffold:C_jacchus3.2.1:ACFV01180075.1:1:13373:1	11394	12515	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047545}  [Source:UniProtKB/TrEMBL;Acc:H9KY99]
ENSCJAG00000010909	NOVEL	protein_coding	ENSCJAG00000010909	scaffold:C_jacchus3.2.1:ACFV01199832.1:1:2799:1	309	2542	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020135}  [Source:UniProtKB/TrEMBL;Acc:H9KWR2]
ENSCJAG00000023226	KNOWN_BY_PROJECTION	protein_coding	OR10G3	chromosome:C_jacchus3.2.1:10:1:132174527:1	45742994	45743935	R	olfactory receptor, family 10, subfamily G, member 3 [Source:HGNC Symbol;Acc:HGNC:8171]
ENSCJAG00000022851	NOVEL	processed_pseudogene	ENSCJAG00000022851	chromosome:C_jacchus3.2.1:22:1:49145316:1	36525479	36526366	D	<no descrition>
ENSCJAG00000022251	NOVEL	processed_pseudogene	ENSCJAG00000022251	chromosome:C_jacchus3.2.1:22:1:49145316:1	31099364	31099828	D	<no descrition>
ENSCJAG00000032628	NOVEL	processed_pseudogene	ENSCJAG00000032628	chromosome:C_jacchus3.2.1:22:1:49145316:1	22953879	22954174	D	<no descrition>
ENSCJAG00000036219	KNOWN	protein_coding	PIGC	chromosome:C_jacchus3.2.1:18:1:47448759:1	34241747	34244437	D	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C {ECO:0000313|EMBL:JAB02954.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017483}  [Source:UniProtKB/TrEMBL;Acc:F7HL53]
ENSCJAG00000033517	NOVEL	processed_pseudogene	ENSCJAG00000033517	chromosome:C_jacchus3.2.1:22:1:49145316:1	10817837	10818316	D	<no descrition>
ENSCJAG00000022949	NOVEL	processed_pseudogene	ENSCJAG00000022949	chromosome:C_jacchus3.2.1:22:1:49145316:1	9336984	9337463	R	<no descrition>
ENSCJAG00000022953	NOVEL	processed_pseudogene	ENSCJAG00000022953	chromosome:C_jacchus3.2.1:14:1:108792865:1	99390250	99390594	D	<no descrition>
ENSCJAG00000021005	NOVEL	processed_pseudogene	ENSCJAG00000021005	chromosome:C_jacchus3.2.1:14:1:108792865:1	96366146	96366373	D	<no descrition>
ENSCJAG00000018934	KNOWN	protein_coding	NECAP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	20468862	20488985	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035200}  [Source:UniProtKB/TrEMBL;Acc:F7IQB8]
ENSCJAG00000022867	NOVEL	processed_pseudogene	ENSCJAG00000022867	chromosome:C_jacchus3.2.1:14:1:108792865:1	76455514	76456170	R	<no descrition>
ENSCJAG00000009537	KNOWN_BY_PROJECTION	protein_coding	C1orf105	chromosome:C_jacchus3.2.1:18:1:47448759:1	34215913	34232911	R	chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:29591]
ENSCJAG00000000564	NOVEL	protein_coding	ENSCJAG00000000564	scaffold:C_jacchus3.2.1:GL285940.1:1:43478:1	22390	23210	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000976}  [Source:UniProtKB/TrEMBL;Acc:H9KVL6]
ENSCJAG00000032941	NOVEL	processed_pseudogene	ENSCJAG00000032941	chromosome:C_jacchus3.2.1:14:1:108792865:1	72086914	72087201	R	<no descrition>
ENSCJAG00000012820	NOVEL	protein_coding	ENSCJAG00000012820	chromosome:C_jacchus3.2.1:22:1:49145316:1	35202829	35203283	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050158}  [Source:UniProtKB/TrEMBL;Acc:F7H492]
ENSCJAG00000001992	NOVEL	protein_coding	ENSCJAG00000001992	scaffold:C_jacchus3.2.1:GL285101.1:1:151588:1	14935	40820	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003604}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ7]
ENSCJAG00000018952	KNOWN	protein_coding	C3AR1	chromosome:C_jacchus3.2.1:9:1:124281992:1	20434613	20443963	R	C3a anaphylatoxin chemotactic receptor {ECO:0000313|EMBL:JAB37702.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035205}  [Source:UniProtKB/TrEMBL;Acc:F7IQB3]
ENSCJAG00000022208	NOVEL	protein_coding	ENSCJAG00000022208	chromosome:C_jacchus3.2.1:22:1:49145316:1	33538303	33538869	R	Ribosomal protein {ECO:0000256|RuleBase:RU000570}  [Source:UniProtKB/TrEMBL;Acc:F7I9B8]
ENSCJAG00000014058	KNOWN_BY_PROJECTION	protein_coding	SYCN	chromosome:C_jacchus3.2.1:22:1:49145316:1	32533072	32533473	R	syncollin [Source:HGNC Symbol;Acc:HGNC:18442]
ENSCJAG00000033740	NOVEL	protein_coding	ENSCJAG00000033740	chromosome:C_jacchus3.2.1:22:1:49145316:1	30428008	30429017	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046049}  [Source:UniProtKB/TrEMBL;Acc:F6ZTI1]
ENSCJAG00000022239	NOVEL	protein_coding	ENSCJAG00000022239	chromosome:C_jacchus3.2.1:22:1:49145316:1	17239512	17239919	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040891}  [Source:UniProtKB/TrEMBL;Acc:F7I6X2]
ENSCJAG00000002991	KNOWN_BY_PROJECTION	protein_coding	LRRC57	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	1123752	1128787	R	leucine rich repeat containing 57 [Source:HGNC Symbol;Acc:HGNC:26719]
ENSCJAG00000023176	NOVEL	protein_coding	ENSCJAG00000023176	chromosome:C_jacchus3.2.1:22:1:49145316:1	14829331	14830281	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041698}  [Source:UniProtKB/TrEMBL;Acc:F7H519]
ENSCJAG00000009411	NOVEL	pseudogene	ENSCJAG00000009411	scaffold:C_jacchus3.2.1:GL284935.1:1:9509:1	1505	2219	R	<no descrition>
ENSCJAG00000036094	NOVEL	protein_coding	ENSCJAG00000036094	chromosome:C_jacchus3.2.1:22:1:49145316:1	11560578	11560979	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052491}  [Source:UniProtKB/TrEMBL;Acc:F7I013]
ENSCJAG00000035326	KNOWN	protein_coding	IER2	chromosome:C_jacchus3.2.1:22:1:49145316:1	12372155	12375041	D	Immediate early response gene 2 protein {ECO:0000313|EMBL:JAB10259.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043364}  [Source:UniProtKB/TrEMBL;Acc:F7IPF6]
ENSCJAG00000031148	NOVEL	protein_coding	ENSCJAG00000031148	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	418721	421122	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010287}  [Source:UniProtKB/TrEMBL;Acc:H9KW88]
ENSCJAG00000037392	NOVEL	protein_coding	ENSCJAG00000037392	chromosome:C_jacchus3.2.1:22:1:49145316:1	11526347	11526706	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052202}  [Source:UniProtKB/TrEMBL;Acc:F7INS4]
ENSCJAG00000022913	KNOWN_BY_PROJECTION	protein_coding	OR1M1	chromosome:C_jacchus3.2.1:22:1:49145316:1	8700042	8701076	R	olfactory receptor, family 1, subfamily M, member 1 [Source:HGNC Symbol;Acc:HGNC:8220]
ENSCJAG00000022912	KNOWN_BY_PROJECTION	protein_coding	S1PR2	chromosome:C_jacchus3.2.1:22:1:49145316:1	9615727	9616788	R	sphingosine-1-phosphate receptor 2 [Source:HGNC Symbol;Acc:HGNC:3169]
ENSCJAG00000022427	KNOWN_BY_PROJECTION	protein_coding	OR2Z1	chromosome:C_jacchus3.2.1:22:1:49145316:1	8391793	8392848	D	olfactory receptor, family 2, subfamily Z, member 1 [Source:HGNC Symbol;Acc:HGNC:15391]
ENSCJAG00000015115	KNOWN_BY_PROJECTION	protein_coding	TSC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	2331243	2554727	R	tuberous sclerosis 2 [Source:HGNC Symbol;Acc:HGNC:12363]
ENSCJAG00000022510	KNOWN_BY_PROJECTION	protein_coding	ZNRF4	chromosome:C_jacchus3.2.1:22:1:49145316:1	5187288	5188727	D	zinc and ring finger 4 [Source:HGNC Symbol;Acc:HGNC:17726]
ENSCJAG00000022512	KNOWN	protein_coding	TNFAIP8L1	chromosome:C_jacchus3.2.1:22:1:49145316:1	4363512	4364108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041119}  [Source:UniProtKB/TrEMBL;Acc:F7DXG7]
ENSCJAG00000038129	KNOWN_BY_PROJECTION	protein_coding	C19orf25	chromosome:C_jacchus3.2.1:22:1:49145316:1	1177869	1177997	R	chromosome 19 open reading frame 25 [Source:HGNC Symbol;Acc:HGNC:26711]
ENSCJAG00000022933	NOVEL	protein_coding	ENSCJAG00000022933	chromosome:C_jacchus3.2.1:14:1:108792865:1	89846385	89847575	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041494}  [Source:UniProtKB/TrEMBL;Acc:F7H001]
ENSCJAG00000022935	NOVEL	protein_coding	ENSCJAG00000022935	chromosome:C_jacchus3.2.1:14:1:108792865:1	87915566	87916243	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041496}  [Source:UniProtKB/TrEMBL;Acc:F7GZZ9]
ENSCJAG00000033920	NOVEL	processed_pseudogene	ENSCJAG00000033920	chromosome:C_jacchus3.2.1:16:1:96796970:1	26079503	26080714	D	<no descrition>
ENSCJAG00000022745	NOVEL	processed_pseudogene	ENSCJAG00000022745	chromosome:C_jacchus3.2.1:16:1:96796970:1	25514837	25515382	R	<no descrition>
ENSCJAG00000031698	NOVEL	processed_pseudogene	ENSCJAG00000031698	chromosome:C_jacchus3.2.1:18:1:47448759:1	32865286	32865666	R	<no descrition>
ENSCJAG00000022951	NOVEL	processed_pseudogene	ENSCJAG00000022951	chromosome:C_jacchus3.2.1:18:1:47448759:1	7351995	7352651	R	<no descrition>
ENSCJAG00000022390	NOVEL	processed_pseudogene	ENSCJAG00000022390	chromosome:C_jacchus3.2.1:18:1:47448759:1	3074000	3074389	D	<no descrition>
ENSCJAG00000023158	KNOWN_BY_PROJECTION	protein_coding	SLC10A5	chromosome:C_jacchus3.2.1:16:1:96796970:1	33721812	33723255	R	solute carrier family 10, member 5 [Source:HGNC Symbol;Acc:HGNC:22981]
ENSCJAG00000018941	KNOWN_BY_PROJECTION	protein_coding	DESI1	scaffold:C_jacchus3.2.1:ACFV01180430.1:1:18222:1	8628	13834	R	desumoylating isopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:24577]
ENSCJAG00000008293	NOVEL	pseudogene	ENSCJAG00000008293	scaffold:C_jacchus3.2.1:GL285855.1:1:127925:1	48295	48779	R	<no descrition>
ENSCJAG00000022705	NOVEL	protein_coding	ENSCJAG00000022705	chromosome:C_jacchus3.2.1:16:1:96796970:1	26051581	26051883	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041298}  [Source:UniProtKB/TrEMBL;Acc:F7H5P7]
ENSCJAG00000022706	NOVEL	protein_coding	ENSCJAG00000022706	chromosome:C_jacchus3.2.1:16:1:96796970:1	25551218	25552187	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041299}  [Source:UniProtKB/TrEMBL;Acc:F7H5P6]
ENSCJAG00000022627	NOVEL	protein_coding	ENSCJAG00000022627	chromosome:C_jacchus3.2.1:16:1:96796970:1	10479033	10479824	R	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7HAW9]
ENSCJAG00000021905	KNOWN_BY_PROJECTION	protein_coding	MOS	chromosome:C_jacchus3.2.1:16:1:96796970:1	9019012	9020052	R	v-mos Moloney murine sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7199]
ENSCJAG00000023121	KNOWN_BY_PROJECTION	protein_coding	NPBWR1	chromosome:C_jacchus3.2.1:16:1:96796970:1	5905104	5906090	D	neuropeptides B/W receptor 1 [Source:HGNC Symbol;Acc:HGNC:4522]
ENSCJAG00000017188	KNOWN_BY_PROJECTION	protein_coding	FBXO39	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	169374	177603	R	F-box protein 39 [Source:HGNC Symbol;Acc:HGNC:28565]
ENSCJAG00000018955	KNOWN	protein_coding	FOXJ2	chromosome:C_jacchus3.2.1:9:1:124281992:1	20408811	20431263	D	Forkhead box protein J2 {ECO:0000313|EMBL:JAB05572.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035239}  [Source:UniProtKB/TrEMBL;Acc:F7IKN2]
ENSCJAG00000013073	KNOWN_BY_PROJECTION	protein_coding	ZNF23	scaffold:C_jacchus3.2.1:ACFV01180946.1:1:14716:1	11654	13174	R	zinc finger protein 23 [Source:HGNC Symbol;Acc:HGNC:13023]
ENSCJAG00000022052	NOVEL	processed_pseudogene	ENSCJAG00000022052	chromosome:C_jacchus3.2.1:1:1:210400635:1	81221214	81221432	R	<no descrition>
ENSCJAG00000035166	NOVEL	protein_coding	ENSCJAG00000035166	scaffold:C_jacchus3.2.1:ACFV01186876.1:1:9995:1	280	1569	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034157}  [Source:UniProtKB/TrEMBL;Acc:H9KXD5]
ENSCJAG00000021753	NOVEL	processed_pseudogene	ENSCJAG00000021753	chromosome:C_jacchus3.2.1:1:1:210400635:1	78535720	78536178	D	<no descrition>
ENSCJAG00000034733	NOVEL	protein_coding	ENSCJAG00000034733	chromosome:C_jacchus3.2.1:18:1:47448759:1	37937217	37937372	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045746}  [Source:UniProtKB/TrEMBL;Acc:F6SSH4]
ENSCJAG00000035362	NOVEL	processed_pseudogene	ENSCJAG00000035362	chromosome:C_jacchus3.2.1:1:1:210400635:1	77036587	77037291	D	<no descrition>
ENSCJAG00000023268	NOVEL	processed_pseudogene	ENSCJAG00000023268	chromosome:C_jacchus3.2.1:1:1:210400635:1	74429874	74430104	R	<no descrition>
ENSCJAG00000032295	NOVEL	protein_coding	ENSCJAG00000032295	chromosome:C_jacchus3.2.1:18:1:47448759:1	34074968	34075432	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048207}  [Source:UniProtKB/TrEMBL;Acc:F7FQ16]
ENSCJAG00000023343	KNOWN_BY_PROJECTION	protein_coding	TEDDM1	chromosome:C_jacchus3.2.1:18:1:47448759:1	23642799	23643614	D	transmembrane epididymal protein 1 [Source:HGNC Symbol;Acc:HGNC:30233]
ENSCJAG00000021716	NOVEL	processed_pseudogene	ENSCJAG00000021716	chromosome:C_jacchus3.2.1:1:1:210400635:1	43072963	43073211	R	<no descrition>
ENSCJAG00000021717	NOVEL	processed_pseudogene	ENSCJAG00000021717	chromosome:C_jacchus3.2.1:1:1:210400635:1	43063178	43063426	R	<no descrition>
ENSCJAG00000031219	NOVEL	protein_coding	ENSCJAG00000031219	chromosome:C_jacchus3.2.1:18:1:47448759:1	23598744	23599526	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043706}  [Source:UniProtKB/TrEMBL;Acc:F7HYA8]
ENSCJAG00000021750	NOVEL	processed_pseudogene	ENSCJAG00000021750	chromosome:C_jacchus3.2.1:1:1:210400635:1	42849644	42850132	R	<no descrition>
ENSCJAG00000034491	NOVEL	protein_coding	ENSCJAG00000034491	chromosome:C_jacchus3.2.1:18:1:47448759:1	15411742	15413105	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047861}  [Source:UniProtKB/TrEMBL;Acc:F7GS11]
ENSCJAG00000022850	NOVEL	processed_pseudogene	ENSCJAG00000022850	chromosome:C_jacchus3.2.1:22:1:49145316:1	38228559	38229848	R	<no descrition>
ENSCJAG00000022039	KNOWN_BY_PROJECTION	protein_coding	OR10J1	chromosome:C_jacchus3.2.1:18:1:47448759:1	13059907	13060996	D	olfactory receptor, family 10, subfamily J, member 1 [Source:HGNC Symbol;Acc:HGNC:8175]
ENSCJAG00000022833	NOVEL	protein_coding	ENSCJAG00000022833	chromosome:C_jacchus3.2.1:1:1:210400635:1	81829078	81829674	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041414}  [Source:UniProtKB/TrEMBL;Acc:F7CWX0]
ENSCJAG00000006347	NOVEL	protein_coding	ENSCJAG00000006347	chromosome:C_jacchus3.2.1:18:1:47448759:1	12516611	12517552	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H7T3]
ENSCJAG00000031623	NOVEL	pseudogene	ENSCJAG00000031623	scaffold:C_jacchus3.2.1:GL286436.1:1:399530:1	357265	358024	R	<no descrition>
ENSCJAG00000008861	NOVEL	protein_coding	ENSCJAG00000008861	chromosome:C_jacchus3.2.1:1:1:210400635:1	78967279	78967611	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046744}  [Source:UniProtKB/TrEMBL;Acc:F7I3N5]
ENSCJAG00000014914	KNOWN_BY_PROJECTION	protein_coding	NTN3	chromosome:C_jacchus3.2.1:12:1:121768101:1	2152130	2154148	R	netrin 3 [Source:HGNC Symbol;Acc:HGNC:8030]
ENSCJAG00000019006	NOVEL	pseudogene	ENSCJAG00000019006	chromosome:C_jacchus3.2.1:9:1:124281992:1	20151662	20152184	D	<no descrition>
ENSCJAG00000004004	NOVEL	protein_coding	ENSCJAG00000004004	scaffold:C_jacchus3.2.1:GL286459.1:1:372756:1	143970	144915	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007270}  [Source:UniProtKB/TrEMBL;Acc:H9KW29]
ENSCJAG00000005409	KNOWN_BY_PROJECTION	protein_coding	DPPA3	chromosome:C_jacchus3.2.1:9:1:124281992:1	20101910	20108818	D	developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:HGNC:19199]
ENSCJAG00000033809	NOVEL	protein_coding	ENSCJAG00000033809	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1268266	1269848	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003588}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ6]
ENSCJAG00000015698	NOVEL	protein_coding	ENSCJAG00000015698	scaffold:C_jacchus3.2.1:GL286564.1:1:27474:1	17746	24349	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047082}  [Source:UniProtKB/TrEMBL;Acc:H9KY80]
ENSCJAG00000034423	NOVEL	protein_coding	ENSCJAG00000034423	scaffold:C_jacchus3.2.1:GL288753.1:1:9331:1	5909	7119	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048038}  [Source:UniProtKB/TrEMBL;Acc:H9KYA9]
ENSCJAG00000014901	KNOWN	protein_coding	ATP6V0C	chromosome:C_jacchus3.2.1:12:1:121768101:1	2101833	2108268	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027449}; V-type proton ATPase 16 kDa proteolipid subunit {ECO:0000313|EMBL:JAB22985.1}  [Source:UniProtKB/TrEMBL;Acc:F7GH31]
ENSCJAG00000020250	NOVEL	protein_coding	ENSCJAG00000020250	scaffold:C_jacchus3.2.1:GL285699.1:1:34255:1	19365	27975	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050892}  [Source:UniProtKB/TrEMBL;Acc:H9KYH9]
ENSCJAG00000005398	KNOWN_BY_PROJECTION	protein_coding	APOBEC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	20042620	20057054	R	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:604]
ENSCJAG00000011729	NOVEL	protein_coding	ENSCJAG00000011729	scaffold:C_jacchus3.2.1:GL284815.1:1:71166:1	47983	49104	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021533}  [Source:UniProtKB/TrEMBL;Acc:H9KWU8]
ENSCJAG00000014876	NOVEL	protein_coding	ENSCJAG00000014876	chromosome:C_jacchus3.2.1:12:1:121768101:1	2091056	2101665	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027436}  [Source:UniProtKB/TrEMBL;Acc:F7GPB8]
ENSCJAG00000032348	NOVEL	protein_coding	ENSCJAG00000032348	chromosome:C_jacchus3.2.1:9:1:124281992:1	20019830	20020884	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006626}  [Source:UniProtKB/TrEMBL;Acc:F7HB62]
ENSCJAG00000000200	KNOWN_BY_PROJECTION	protein_coding	TRMT13	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	48555	63653	R	tRNA methyltransferase 13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25502]
ENSCJAG00000014872	NOVEL	protein_coding	ENSCJAG00000014872	chromosome:C_jacchus3.2.1:12:1:121768101:1	2065555	2066181	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027386}  [Source:UniProtKB/TrEMBL;Acc:F7HA73]
ENSCJAG00000033321	NOVEL	protein_coding	ENSCJAG00000033321	chromosome:C_jacchus3.2.1:9:1:124281992:1	20008755	20009755	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044057}  [Source:UniProtKB/TrEMBL;Acc:F7H7A8]
ENSCJAG00000022042	KNOWN_BY_PROJECTION	protein_coding	OR6K6	chromosome:C_jacchus3.2.1:18:1:47448759:1	12478978	12480139	R	olfactory receptor, family 6, subfamily K, member 6 [Source:HGNC Symbol;Acc:HGNC:15033]
ENSCJAG00000022615	KNOWN_BY_PROJECTION	protein_coding	CYSLTR2	chromosome:C_jacchus3.2.1:1:1:210400635:1	66063128	66065929	R	cysteinyl leukotriene receptor 2 [Source:HGNC Symbol;Acc:HGNC:18274]
ENSCJAG00000022614	KNOWN_BY_PROJECTION	protein_coding	ARL11	chromosome:C_jacchus3.2.1:1:1:210400635:1	65209057	65209647	R	ADP-ribosylation factor-like 11 [Source:HGNC Symbol;Acc:HGNC:24046]
ENSCJAG00000005330	NOVEL	pseudogene	ENSCJAG00000005330	chromosome:C_jacchus3.2.1:9:1:124281992:1	19862382	19863598	D	<no descrition>
ENSCJAG00000005375	NOVEL	protein_coding	ENSCJAG00000005375	chromosome:C_jacchus3.2.1:9:1:124281992:1	19934548	19936023	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009819}  [Source:UniProtKB/TrEMBL;Acc:F7FJU1]
ENSCJAG00000022048	KNOWN_BY_PROJECTION	protein_coding	OR10K1	chromosome:C_jacchus3.2.1:18:1:47448759:1	12249694	12250766	D	olfactory receptor, family 10, subfamily K, member 1 [Source:HGNC Symbol;Acc:HGNC:14693]
ENSCJAG00000006442	KNOWN_BY_PROJECTION	protein_coding	OR10K2	chromosome:C_jacchus3.2.1:18:1:47448759:1	12205530	12206468	R	olfactory receptor, family 10, subfamily K, member 2 [Source:HGNC Symbol;Acc:HGNC:14826]
ENSCJAG00000006330	KNOWN_BY_PROJECTION	protein_coding	CCNB3	scaffold:C_jacchus3.2.1:GL285992.1:1:40391:1	2248	14058	D	cyclin B3 [Source:HGNC Symbol;Acc:HGNC:18709]
ENSCJAG00000022613	NOVEL	protein_coding	ENSCJAG00000022613	chromosome:C_jacchus3.2.1:1:1:210400635:1	65161572	65162322	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041212}  [Source:UniProtKB/TrEMBL;Acc:F7HAY4]
ENSCJAG00000000197	KNOWN_BY_PROJECTION	protein_coding	LRRC39	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	38152	49470	D	leucine rich repeat containing 39 [Source:HGNC Symbol;Acc:HGNC:28228]
ENSCJAG00000006444	KNOWN_BY_PROJECTION	protein_coding	OR10T2	chromosome:C_jacchus3.2.1:18:1:47448759:1	12184289	12185260	R	olfactory receptor, family 10, subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:14816]
ENSCJAG00000022265	KNOWN_BY_PROJECTION	protein_coding	GNG10	chromosome:C_jacchus3.2.1:18:1:47448759:1	12046269	12046472	D	guanine nucleotide binding protein (G protein), gamma 10 [Source:HGNC Symbol;Acc:HGNC:4402]
ENSCJAG00000023308	NOVEL	protein_coding	ENSCJAG00000023308	chromosome:C_jacchus3.2.1:1:1:210400635:1	60567852	60568807	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041814}  [Source:UniProtKB/TrEMBL;Acc:F7E984]
ENSCJAG00000014801	KNOWN	protein_coding	PDPK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	2008073	2082991	R	3-phosphoinositide-dependent protein kinase 1 isoform 1 {ECO:0000313|EMBL:JAB02707.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027381}  [Source:UniProtKB/TrEMBL;Acc:F7HA88]
ENSCJAG00000023309	NOVEL	protein_coding	ENSCJAG00000023309	chromosome:C_jacchus3.2.1:1:1:210400635:1	54742056	54742936	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041815}  [Source:UniProtKB/TrEMBL;Acc:F7E980]
ENSCJAG00000022748	NOVEL	protein_coding	ENSCJAG00000022748	chromosome:C_jacchus3.2.1:18:1:47448759:1	8862226	8862950	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044075}  [Source:UniProtKB/TrEMBL;Acc:F7H260]
ENSCJAG00000021718	KNOWN_BY_PROJECTION	protein_coding	TMSB4X	chromosome:C_jacchus3.2.1:1:1:210400635:1	41815885	41816487	D	thymosin beta 4, X-linked [Source:HGNC Symbol;Acc:HGNC:11881]
ENSCJAG00000009396	KNOWN_BY_PROJECTION	protein_coding	FASLG	chromosome:C_jacchus3.2.1:18:1:47448759:1	34036253	34044358	R	Fas ligand (TNF superfamily, member 6) [Source:HGNC Symbol;Acc:HGNC:11936]
ENSCJAG00000022722	KNOWN	protein_coding	ENSCJAG00000022722	chromosome:C_jacchus3.2.1:18:1:47448759:1	7794305	7794715	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7G6P0]
ENSCJAG00000035865	NOVEL	protein_coding	ENSCJAG00000035865	chromosome:C_jacchus3.2.1:18:1:47448759:1	5259846	5259983	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052233}  [Source:UniProtKB/TrEMBL;Acc:F7ILF1]
ENSCJAG00000002598	KNOWN_BY_PROJECTION	protein_coding	RPS19BP1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	900527	904836	R	ribosomal protein S19 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:28749]
ENSCJAG00000023411	NOVEL	protein_coding	ENSCJAG00000023411	chromosome:C_jacchus3.2.1:18:1:47448759:1	4583023	4584233	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041904}  [Source:UniProtKB/TrEMBL;Acc:F7H4H6]
ENSCJAG00000000777	KNOWN_BY_PROJECTION	protein_coding	H2AFX	chromosome:C_jacchus3.2.1:18:1:47448759:1	3853145	3853474	D	H2A histone family, member X [Source:HGNC Symbol;Acc:HGNC:4739]
ENSCJAG00000003483	KNOWN	protein_coding	HS6ST3	chromosome:C_jacchus3.2.1:1:1:210400635:1	11946397	11951692	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006324}  [Source:UniProtKB/TrEMBL;Acc:F7F4S4]
ENSCJAG00000005332	KNOWN	protein_coding	CD163	chromosome:C_jacchus3.2.1:9:1:124281992:1	19753072	19904000	R	Scavenger receptor cysteine-rich type 1 protein M130 isoform a {ECO:0000313|EMBL:JAB35412.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009812}  [Source:UniProtKB/TrEMBL;Acc:F7FJX0]
ENSCJAG00000022869	NOVEL	protein_coding	ENSCJAG00000022869	chromosome:C_jacchus3.2.1:1:1:210400635:1	8640759	8641310	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041440}  [Source:UniProtKB/TrEMBL;Acc:F7HAN6]
ENSCJAG00000009385	KNOWN_BY_PROJECTION	protein_coding	TNFSF18	chromosome:C_jacchus3.2.1:18:1:47448759:1	33691648	33702615	D	tumor necrosis factor (ligand) superfamily, member 18 [Source:HGNC Symbol;Acc:HGNC:11932]
ENSCJAG00000022179	KNOWN_BY_PROJECTION	protein_coding	HIST2H3C	chromosome:C_jacchus3.2.1:18:1:47448759:1	3821295	3821802	D	histone cluster 2, H3c [Source:HGNC Symbol;Acc:HGNC:20503]
ENSCJAG00000021759	NOVEL	protein_coding	ENSCJAG00000021759	chromosome:C_jacchus3.2.1:1:1:210400635:1	7152613	7152951	D	<no descrition>
ENSCJAG00000023172	KNOWN_BY_PROJECTION	protein_coding	RNF225	chromosome:C_jacchus3.2.1:22:1:49145316:1	48940161	48940985	D	ring finger protein 225 [Source:HGNC Symbol;Acc:HGNC:51249]
ENSCJAG00000000313	KNOWN_BY_PROJECTION	protein_coding	ZNF837	chromosome:C_jacchus3.2.1:22:1:49145316:1	48906823	48908010	R	zinc finger protein 837 [Source:HGNC Symbol;Acc:HGNC:25164]
ENSCJAG00000014778	KNOWN_BY_PROJECTION	protein_coding	PRSS27	chromosome:C_jacchus3.2.1:12:1:121768101:1	1963037	1970658	D	protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
ENSCJAG00000009377	KNOWN_BY_PROJECTION	protein_coding	TNFSF4	chromosome:C_jacchus3.2.1:18:1:47448759:1	33575703	33602518	D	tumor necrosis factor (ligand) superfamily, member 4 [Source:HGNC Symbol;Acc:HGNC:11934]
ENSCJAG00000022176	NOVEL	protein_coding	ENSCJAG00000022176	chromosome:C_jacchus3.2.1:18:1:47448759:1	3687988	3688631	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040832}  [Source:UniProtKB/TrEMBL;Acc:F7IE06]
ENSCJAG00000009352	NOVEL	pseudogene	ENSCJAG00000009352	chromosome:C_jacchus3.2.1:18:1:47448759:1	33299876	33300234	D	<no descrition>
ENSCJAG00000035483	NOVEL	protein_coding	ENSCJAG00000035483	chromosome:C_jacchus3.2.1:22:1:49145316:1	43972763	43973125	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048486}  [Source:UniProtKB/TrEMBL;Acc:F7H8D2]
ENSCJAG00000022455	NOVEL	protein_coding	ENSCJAG00000022455	chromosome:C_jacchus3.2.1:22:1:49145316:1	43938502	43938864	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041068}  [Source:UniProtKB/TrEMBL;Acc:F7FGH0]
ENSCJAG00000035967	KNOWN_BY_PROJECTION	protein_coding	SPACA4	chromosome:C_jacchus3.2.1:22:1:49145316:1	40541793	40542173	D	sperm acrosome associated 4 [Source:HGNC Symbol;Acc:HGNC:16441]
ENSCJAG00000022836	KNOWN_BY_PROJECTION	protein_coding	C5AR1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39230231	39231313	D	complement component 5a receptor 1 [Source:HGNC Symbol;Acc:HGNC:1338]
ENSCJAG00000033703	NOVEL	processed_pseudogene	ENSCJAG00000033703	chromosome:C_jacchus3.2.1:7:1:155834243:1	103967202	103967537	R	<no descrition>
ENSCJAG00000021737	NOVEL	processed_pseudogene	ENSCJAG00000021737	chromosome:C_jacchus3.2.1:7:1:155834243:1	87084210	87085199	D	<no descrition>
ENSCJAG00000003026	KNOWN_BY_PROJECTION	protein_coding	CAPN3	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	946697	967580	D	calpain 3, (p94) [Source:HGNC Symbol;Acc:HGNC:1480]
ENSCJAG00000021564	NOVEL	processed_pseudogene	ENSCJAG00000021564	chromosome:C_jacchus3.2.1:7:1:155834243:1	86037668	86038843	R	<no descrition>
ENSCJAG00000021749	NOVEL	processed_pseudogene	ENSCJAG00000021749	chromosome:C_jacchus3.2.1:7:1:155834243:1	80818036	80818827	R	<no descrition>
ENSCJAG00000022221	NOVEL	processed_pseudogene	ENSCJAG00000022221	chromosome:C_jacchus3.2.1:7:1:155834243:1	80561797	80562087	D	<no descrition>
ENSCJAG00000023351	NOVEL	processed_pseudogene	ENSCJAG00000023351	chromosome:C_jacchus3.2.1:7:1:155834243:1	79097424	79097949	D	<no descrition>
ENSCJAG00000033910	NOVEL	processed_pseudogene	ENSCJAG00000033910	chromosome:C_jacchus3.2.1:7:1:155834243:1	61002323	61002670	R	<no descrition>
ENSCJAG00000023304	NOVEL	processed_pseudogene	ENSCJAG00000023304	chromosome:C_jacchus3.2.1:7:1:155834243:1	57847837	57847992	D	<no descrition>
ENSCJAG00000032581	NOVEL	processed_pseudogene	ENSCJAG00000032581	chromosome:C_jacchus3.2.1:7:1:155834243:1	55410311	55410499	R	<no descrition>
ENSCJAG00000022948	NOVEL	protein_coding	ENSCJAG00000022948	chromosome:C_jacchus3.2.1:7:1:155834243:1	108430079	108431557	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041509}  [Source:UniProtKB/TrEMBL;Acc:F7GPM4]
ENSCJAG00000023000	NOVEL	protein_coding	ENSCJAG00000023000	chromosome:C_jacchus3.2.1:7:1:155834243:1	104212397	104212666	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042249}  [Source:UniProtKB/TrEMBL;Acc:F7ARB9]
ENSCJAG00000022999	NOVEL	protein_coding	ENSCJAG00000022999	chromosome:C_jacchus3.2.1:7:1:155834243:1	104211161	104211598	R	Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}  [Source:UniProtKB/TrEMBL;Acc:F6TPY4]
ENSCJAG00000022820	NOVEL	protein_coding	ENSCJAG00000022820	chromosome:C_jacchus3.2.1:7:1:155834243:1	98927703	98928572	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041401}  [Source:UniProtKB/TrEMBL;Acc:F7DFF2]
ENSCJAG00000022958	NOVEL	protein_coding	ENSCJAG00000022958	chromosome:C_jacchus3.2.1:7:1:155834243:1	97409026	97409439	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001488}  [Source:UniProtKB/TrEMBL;Acc:F6VGW5]
ENSCJAG00000022998	NOVEL	protein_coding	ENSCJAG00000022998	chromosome:C_jacchus3.2.1:7:1:155834243:1	96092667	96093862	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044145}  [Source:UniProtKB/TrEMBL;Acc:F7GAI1]
ENSCJAG00000022956	NOVEL	protein_coding	ENSCJAG00000022956	chromosome:C_jacchus3.2.1:7:1:155834243:1	94410828	94411090	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041511}  [Source:UniProtKB/TrEMBL;Acc:F7GHT3]
ENSCJAG00000022957	NOVEL	protein_coding	ENSCJAG00000022957	chromosome:C_jacchus3.2.1:7:1:155834243:1	94991184	94991465	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041512}  [Source:UniProtKB/TrEMBL;Acc:F7GHT0]
ENSCJAG00000032350	NOVEL	protein_coding	ENSCJAG00000032350	chromosome:C_jacchus3.2.1:7:1:155834243:1	87833174	87833767	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050660}  [Source:UniProtKB/TrEMBL;Acc:F7GMR9]
ENSCJAG00000033144	NOVEL	protein_coding	ENSCJAG00000033144	chromosome:C_jacchus3.2.1:7:1:155834243:1	86282207	86282338	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046138}  [Source:UniProtKB/TrEMBL;Acc:F6WEQ5]
ENSCJAG00000022220	NOVEL	protein_coding	ENSCJAG00000022220	chromosome:C_jacchus3.2.1:7:1:155834243:1	80420215	80420616	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7I993]
ENSCJAG00000022222	KNOWN_BY_PROJECTION	protein_coding	GNG5	chromosome:C_jacchus3.2.1:7:1:155834243:1	80603481	80603962	D	guanine nucleotide binding protein (G protein), gamma 5 [Source:HGNC Symbol;Acc:HGNC:4408]
ENSCJAG00000031419	NOVEL	protein_coding	ENSCJAG00000031419	chromosome:C_jacchus3.2.1:7:1:155834243:1	80246400	80246699	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050358}  [Source:UniProtKB/TrEMBL;Acc:F7FR71]
ENSCJAG00000023335	KNOWN_BY_PROJECTION	protein_coding	TCTEX1D4	chromosome:C_jacchus3.2.1:7:1:155834243:1	79571655	79572320	R	Tctex1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:32315]
ENSCJAG00000032368	NOVEL	protein_coding	ENSCJAG00000032368	chromosome:C_jacchus3.2.1:7:1:155834243:1	77834737	77835675	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043877}  [Source:UniProtKB/TrEMBL;Acc:F7I5A0]
ENSCJAG00000006398	NOVEL	pseudogene	ENSCJAG00000006398	scaffold:C_jacchus3.2.1:GL285733.1:1:35496:1	17421	17918	R	<no descrition>
ENSCJAG00000003314	NOVEL	protein_coding	ENSCJAG00000003314	chromosome:C_jacchus3.2.1:7:1:155834243:1	77806790	77807719	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006011}  [Source:UniProtKB/TrEMBL;Acc:F7H712]
ENSCJAG00000023374	KNOWN_BY_PROJECTION	protein_coding	GJB4	chromosome:C_jacchus3.2.1:7:1:155834243:1	69059322	69060476	D	gap junction protein, beta 4, 30.3kDa [Source:HGNC Symbol;Acc:HGNC:4286]
ENSCJAG00000014294	NOVEL	pseudogene	ENSCJAG00000014294	scaffold:C_jacchus3.2.1:ACFV01174532.1:1:46352:1	16558	17755	R	<no descrition>
ENSCJAG00000014745	KNOWN	protein_coding	HAGH	chromosome:C_jacchus3.2.1:12:1:121768101:1	1887134	1904410	R	Callithrix jacchus hydroxyacylglutathione hydrolase (HAGH), mRNA. [Source:RefSeq mRNA;Acc:NM_001267741]
ENSCJAG00000011262	NOVEL	pseudogene	ENSCJAG00000011262	scaffold:C_jacchus3.2.1:GL285512.1:1:140942:1	73632	74659	R	<no descrition>
ENSCJAG00000022641	KNOWN	protein_coding	ENSCJAG00000022641	chromosome:C_jacchus3.2.1:7:1:155834243:1	62103067	62103459	R	40S ribosomal protein S15a {ECO:0000313|EMBL:JAB45809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041240}  [Source:UniProtKB/TrEMBL;Acc:F7HAU7]
ENSCJAG00000014712	KNOWN_BY_PROJECTION	protein_coding	EME2	chromosome:C_jacchus3.2.1:12:1:121768101:1	1846926	1861737	D	essential meiotic structure-specific endonuclease subunit 2 [Source:HGNC Symbol;Acc:HGNC:27289]
ENSCJAG00000021981	KNOWN_BY_PROJECTION	protein_coding	SFN	chromosome:C_jacchus3.2.1:7:1:155834243:1	60956476	60957882	D	stratifin [Source:HGNC Symbol;Acc:HGNC:10773]
ENSCJAG00000021980	KNOWN_BY_PROJECTION	protein_coding	RPL19	chromosome:C_jacchus3.2.1:7:1:155834243:1	60555065	60555749	R	ribosomal protein L19 [Source:HGNC Symbol;Acc:HGNC:10312]
ENSCJAG00000021979	NOVEL	protein_coding	ENSCJAG00000021979	chromosome:C_jacchus3.2.1:7:1:155834243:1	60488204	60488833	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040658}  [Source:UniProtKB/TrEMBL;Acc:F7I9C7]
ENSCJAG00000003212	KNOWN_BY_PROJECTION	protein_coding	PLA2G4F	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	606238	619715	R	phospholipase A2, group IVF [Source:HGNC Symbol;Acc:HGNC:27396]
ENSCJAG00000035812	NOVEL	protein_coding	ENSCJAG00000035812	chromosome:C_jacchus3.2.1:7:1:155834243:1	60362465	60362611	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052353}  [Source:UniProtKB/TrEMBL;Acc:F7IR36]
ENSCJAG00000032722	NOVEL	protein_coding	ENSCJAG00000032722	chromosome:C_jacchus3.2.1:7:1:155834243:1	55944345	55945166	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051006}  [Source:UniProtKB/TrEMBL;Acc:F7CJ38]
ENSCJAG00000022133	NOVEL	protein_coding	ENSCJAG00000022133	chromosome:C_jacchus3.2.1:7:1:155834243:1	51418427	51419036	D	Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}  [Source:UniProtKB/TrEMBL;Acc:F7IQQ4]
ENSCJAG00000022346	NOVEL	processed_pseudogene	ENSCJAG00000022346	chromosome:C_jacchus3.2.1:3:1:190850796:1	20364310	20364795	R	<no descrition>
ENSCJAG00000022347	NOVEL	processed_pseudogene	ENSCJAG00000022347	chromosome:C_jacchus3.2.1:3:1:190850796:1	17217175	17217579	D	<no descrition>
ENSCJAG00000023002	NOVEL	processed_pseudogene	ENSCJAG00000023002	chromosome:C_jacchus3.2.1:12:1:121768101:1	97827401	97827961	R	<no descrition>
ENSCJAG00000032402	NOVEL	processed_pseudogene	ENSCJAG00000032402	chromosome:C_jacchus3.2.1:12:1:121768101:1	94776375	94776809	R	<no descrition>
ENSCJAG00000023001	NOVEL	processed_pseudogene	ENSCJAG00000023001	chromosome:C_jacchus3.2.1:12:1:121768101:1	91712515	91713243	R	<no descrition>
ENSCJAG00000022969	NOVEL	processed_pseudogene	ENSCJAG00000022969	chromosome:C_jacchus3.2.1:12:1:121768101:1	87089496	87089981	R	<no descrition>
ENSCJAG00000032242	NOVEL	processed_pseudogene	ENSCJAG00000032242	chromosome:C_jacchus3.2.1:12:1:121768101:1	60506044	60507564	D	<no descrition>
ENSCJAG00000022551	NOVEL	processed_pseudogene	ENSCJAG00000022551	chromosome:C_jacchus3.2.1:12:1:121768101:1	32958282	32958721	D	<no descrition>
ENSCJAG00000021959	NOVEL	protein_coding	ENSCJAG00000021959	chromosome:C_jacchus3.2.1:3:1:190850796:1	26388420	26389868	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040638}  [Source:UniProtKB/TrEMBL;Acc:F7IBQ9]
ENSCJAG00000014636	KNOWN_BY_PROJECTION	protein_coding	MAPK8IP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	1777587	1841879	D	mitogen-activated protein kinase 8 interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:6884]
ENSCJAG00000033770	NOVEL	protein_coding	ENSCJAG00000033770	chromosome:C_jacchus3.2.1:3:1:190850796:1	11855507	11856205	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049281}  [Source:UniProtKB/TrEMBL;Acc:F6UA71]
ENSCJAG00000022311	NOVEL	protein_coding	ENSCJAG00000022311	chromosome:C_jacchus3.2.1:3:1:190850796:1	10779246	10779620	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040951}  [Source:UniProtKB/TrEMBL;Acc:F7HUZ8]
ENSCJAG00000021933	NOVEL	protein_coding	ENSCJAG00000021933	scaffold:C_jacchus3.2.1:GL284704.1:1:14390:1	7189	7536	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040617}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ2]
ENSCJAG00000014907	KNOWN_BY_PROJECTION	protein_coding	PWWP2B	chromosome:C_jacchus3.2.1:12:1:121768101:1	120511042	120512691	D	PWWP domain containing 2B [Source:HGNC Symbol;Acc:HGNC:25150]
ENSCJAG00000021948	NOVEL	protein_coding	ENSCJAG00000021948	scaffold:C_jacchus3.2.1:ACFV01193671.1:1:3338:1	2256	2864	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040632}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ4]
ENSCJAG00000023255	KNOWN	protein_coding	RPS25	chromosome:C_jacchus3.2.1:12:1:121768101:1	107519717	107520193	R	40S ribosomal protein S25  [Source:RefSeq peptide;Acc:NP_001240703]
ENSCJAG00000022974	NOVEL	protein_coding	ENSCJAG00000022974	chromosome:C_jacchus3.2.1:12:1:121768101:1	91831005	91831256	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041529}  [Source:UniProtKB/TrEMBL;Acc:F7G6I2]
ENSCJAG00000003170	KNOWN	protein_coding	VPS39	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	623779	633120	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005840}  [Source:UniProtKB/TrEMBL;Acc:H9KW00]
ENSCJAG00000009241	KNOWN	protein_coding	DARS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	33124928	33160107	R	Aspartate--tRNA ligase, mitochondrial {ECO:0000313|EMBL:JAB02548.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017030}  [Source:UniProtKB/TrEMBL;Acc:F7HYM1]
ENSCJAG00000014596	KNOWN_BY_PROJECTION	protein_coding	CRAMP1L	chromosome:C_jacchus3.2.1:12:1:121768101:1	1683908	1742381	D	Crm, cramped-like (Drosophila) [Source:HGNC Symbol;Acc:HGNC:14122]
ENSCJAG00000034217	NOVEL	protein_coding	ENSCJAG00000034217	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	198614	199687	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028945}  [Source:UniProtKB/TrEMBL;Acc:H9KX58]
ENSCJAG00000022968	NOVEL	protein_coding	ENSCJAG00000022968	chromosome:C_jacchus3.2.1:12:1:121768101:1	84475482	84475987	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041523}  [Source:UniProtKB/TrEMBL;Acc:F7G6L6]
ENSCJAG00000014588	KNOWN	protein_coding	TMEM204	chromosome:C_jacchus3.2.1:12:1:121768101:1	1602318	1622054	D	Transmembrane protein 204 {ECO:0000313|EMBL:JAB03088.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026861}  [Source:UniProtKB/TrEMBL;Acc:F7I213]
ENSCJAG00000022966	KNOWN_BY_PROJECTION	protein_coding	C10orf12	chromosome:C_jacchus3.2.1:12:1:121768101:1	84033885	84038387	D	chromosome 10 open reading frame 12 [Source:HGNC Symbol;Acc:HGNC:23420]
ENSCJAG00000010855	KNOWN_BY_PROJECTION	protein_coding	ISL2	chromosome:C_jacchus3.2.1:Y:1:2853901:1	2228289	2236376	R	ISL LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:18524]
ENSCJAG00000032048	NOVEL	pseudogene	ENSCJAG00000032048	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1839049	1840180	D	<no descrition>
ENSCJAG00000022753	NOVEL	protein_coding	ENSCJAG00000022753	chromosome:C_jacchus3.2.1:12:1:121768101:1	78747488	78747839	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050633}  [Source:UniProtKB/TrEMBL;Acc:F7GY19]
ENSCJAG00000022808	KNOWN	protein_coding	ENSCJAG00000022808	chromosome:C_jacchus3.2.1:12:1:121768101:1	78197348	78198050	D	39S ribosomal protein L35, mitochondrial isoform a {ECO:0000313|EMBL:JAB04139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036160}  [Source:UniProtKB/TrEMBL;Acc:F7H913]
ENSCJAG00000002956	KNOWN_BY_PROJECTION	protein_coding	PPP1R27	scaffold:C_jacchus3.2.1:GL287821.1:1:70426:1	33750	34950	D	protein phosphatase 1, regulatory subunit 27 [Source:HGNC Symbol;Acc:HGNC:16813]
ENSCJAG00000018832	KNOWN_BY_PROJECTION	protein_coding	YBX1	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1005970	1006945	D	Y box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014]
ENSCJAG00000022329	NOVEL	protein_coding	ENSCJAG00000022329	chromosome:C_jacchus3.2.1:12:1:121768101:1	71683823	71685387	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040969}  [Source:UniProtKB/TrEMBL;Acc:F7HPU7]
ENSCJAG00000009215	KNOWN_BY_PROJECTION	protein_coding	ZBTB37	chromosome:C_jacchus3.2.1:18:1:47448759:1	33099311	33117060	R	zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
ENSCJAG00000022415	NOVEL	protein_coding	ENSCJAG00000022415	chromosome:C_jacchus3.2.1:12:1:121768101:1	65976798	65977116	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041037}  [Source:UniProtKB/TrEMBL;Acc:F7FGS7]
ENSCJAG00000020791	NOVEL	protein_coding	ENSCJAG00000020791	chromosome:C_jacchus3.2.1:12:1:121768101:1	63655829	63656236	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038674}  [Source:UniProtKB/TrEMBL;Acc:F7IT12]
ENSCJAG00000023429	KNOWN	protein_coding	ADO	chromosome:C_jacchus3.2.1:12:1:121768101:1	61558845	61562267	R	2-aminoethanethiol dioxygenase {ECO:0000313|EMBL:JAB12865.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041922}  [Source:UniProtKB/TrEMBL;Acc:F7GUF4]
ENSCJAG00000023030	NOVEL	protein_coding	ENSCJAG00000023030	chromosome:C_jacchus3.2.1:12:1:121768101:1	55153515	55153870	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041576}  [Source:UniProtKB/TrEMBL;Acc:F7FEK9]
ENSCJAG00000022541	NOVEL	protein_coding	ENSCJAG00000022541	chromosome:C_jacchus3.2.1:12:1:121768101:1	53708487	53708747	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041148}  [Source:UniProtKB/TrEMBL;Acc:F7DX54]
ENSCJAG00000023383	NOVEL	protein_coding	ENSCJAG00000023383	chromosome:C_jacchus3.2.1:12:1:121768101:1	50145917	50146831	R	<no descrition>
ENSCJAG00000023382	NOVEL	protein_coding	ENSCJAG00000023382	chromosome:C_jacchus3.2.1:12:1:121768101:1	46076843	46077241	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041878}  [Source:UniProtKB/TrEMBL;Acc:F7HF99]
ENSCJAG00000038039	NOVEL	protein_coding	ENSCJAG00000038039	chromosome:C_jacchus3.2.1:12:1:121768101:1	47637688	47637795	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052321}  [Source:UniProtKB/TrEMBL;Acc:F7HQY2]
ENSCJAG00000008307	KNOWN_BY_PROJECTION	protein_coding	OR13A1	chromosome:C_jacchus3.2.1:12:1:121768101:1	33030104	33031060	R	olfactory receptor, family 13, subfamily A, member 1 [Source:HGNC Symbol;Acc:HGNC:14772]
ENSCJAG00000009182	KNOWN_BY_PROJECTION	protein_coding	SERPINC1	chromosome:C_jacchus3.2.1:18:1:47448759:1	33062791	33080144	D	serpin peptidase inhibitor, clade C (antithrombin), member 1 [Source:HGNC Symbol;Acc:HGNC:775]
ENSCJAG00000018186	NOVEL	protein_coding	ENSCJAG00000018186	scaffold:C_jacchus3.2.1:GL287621.1:1:29668:1	4536	7245	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049603}  [Source:UniProtKB/TrEMBL;Acc:H9KYE8]
ENSCJAG00000016268	NOVEL	protein_coding	ENSCJAG00000016268	chromosome:C_jacchus3.2.1:12:1:121768101:1	31289056	31289969	D	60S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572}  [Source:UniProtKB/TrEMBL;Acc:F7I7D7]
ENSCJAG00000033985	NOVEL	protein_coding	ENSCJAG00000033985	chromosome:C_jacchus3.2.1:12:1:121768101:1	29475199	29475894	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044565}  [Source:UniProtKB/TrEMBL;Acc:F7FIF7]
ENSCJAG00000021791	NOVEL	processed_pseudogene	ENSCJAG00000021791	chromosome:C_jacchus3.2.1:15:1:98464013:1	84603810	84604277	D	<no descrition>
ENSCJAG00000038019	NOVEL	processed_pseudogene	ENSCJAG00000038019	chromosome:C_jacchus3.2.1:15:1:98464013:1	71573593	71573742	R	<no descrition>
ENSCJAG00000011283	NOVEL	processed_pseudogene	ENSCJAG00000011283	chromosome:C_jacchus3.2.1:15:1:98464013:1	68521240	68522757	R	<no descrition>
ENSCJAG00000008051	NOVEL	processed_pseudogene	ENSCJAG00000008051	chromosome:C_jacchus3.2.1:13:1:117903854:1	98303157	98303636	D	<no descrition>
ENSCJAG00000020160	NOVEL	protein_coding	ENSCJAG00000020160	chromosome:C_jacchus3.2.1:15:1:98464013:1	87805286	87806260	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037498}  [Source:UniProtKB/TrEMBL;Acc:F7AYD3]
ENSCJAG00000016522	NOVEL	protein_coding	ENSCJAG00000016522	scaffold:C_jacchus3.2.1:GL286468.1:1:194428:1	85619	87076	R	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:H9KX80]
ENSCJAG00000022130	KNOWN	protein_coding	WDR5B	chromosome:C_jacchus3.2.1:15:1:98464013:1	74613769	74615508	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040789}; WD repeat-containing protein 5B {ECO:0000313|EMBL:JAB08143.1}  [Source:UniProtKB/TrEMBL;Acc:F7IQR8]
ENSCJAG00000022924	KNOWN_BY_PROJECTION	protein_coding	C3orf56	chromosome:C_jacchus3.2.1:15:1:98464013:1	69996682	69997428	R	chromosome 3 open reading frame 56 [Source:HGNC Symbol;Acc:HGNC:32481]
ENSCJAG00000023081	NOVEL	protein_coding	ENSCJAG00000023081	chromosome:C_jacchus3.2.1:15:1:98464013:1	64302082	64302666	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041614}  [Source:UniProtKB/TrEMBL;Acc:F7DVB8]
ENSCJAG00000023077	NOVEL	protein_coding	ENSCJAG00000023077	chromosome:C_jacchus3.2.1:15:1:98464013:1	52704911	52705312	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041610}  [Source:UniProtKB/TrEMBL;Acc:F7DVE7]
ENSCJAG00000022295	NOVEL	protein_coding	ENSCJAG00000022295	chromosome:C_jacchus3.2.1:15:1:98464013:1	36843751	36844218	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040942}  [Source:UniProtKB/TrEMBL;Acc:F7HV31]
ENSCJAG00000034758	NOVEL	protein_coding	ENSCJAG00000034758	chromosome:C_jacchus3.2.1:15:1:98464013:1	33711564	33712730	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048254}  [Source:UniProtKB/TrEMBL;Acc:F7E5R7]
ENSCJAG00000021836	NOVEL	protein_coding	ENSCJAG00000021836	chromosome:C_jacchus3.2.1:15:1:98464013:1	32307716	32309467	R	SH3 domain-binding glutamic acid-rich-like protein {ECO:0000256|PIRNR:PIRNR008142}  [Source:UniProtKB/TrEMBL;Acc:F7ITE6]
ENSCJAG00000005510	NOVEL	protein_coding	ENSCJAG00000005510	chromosome:C_jacchus3.2.1:15:1:98464013:1	27032989	27033685	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010054}  [Source:UniProtKB/TrEMBL;Acc:F7BDP2]
ENSCJAG00000019430	NOVEL	pseudogene	ENSCJAG00000019430	scaffold:C_jacchus3.2.1:GL286477.1:1:60449:1	14685	15007	R	<no descrition>
ENSCJAG00000022224	NOVEL	protein_coding	ENSCJAG00000022224	chromosome:C_jacchus3.2.1:15:1:98464013:1	18035773	18036622	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040876}  [Source:UniProtKB/TrEMBL;Acc:F7I986]
ENSCJAG00000009106	KNOWN	protein_coding	RC3H1	chromosome:C_jacchus3.2.1:18:1:47448759:1	32989269	33043683	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016809}  [Source:UniProtKB/TrEMBL;Acc:F6YKI3]
ENSCJAG00000022227	NOVEL	protein_coding	ENSCJAG00000022227	chromosome:C_jacchus3.2.1:15:1:98464013:1	13686949	13687663	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040879}  [Source:UniProtKB/TrEMBL;Acc:F7I981]
ENSCJAG00000022231	KNOWN	protein_coding	C3ORF70	chromosome:C_jacchus3.2.1:15:1:98464013:1	6698466	6699014	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040883}  [Source:UniProtKB/TrEMBL;Acc:F7I966]
ENSCJAG00000000070	NOVEL	pseudogene	ENSCJAG00000000070	scaffold:C_jacchus3.2.1:GL289036.1:1:8205:1	2342	3542	D	<no descrition>
ENSCJAG00000022232	KNOWN	protein_coding	MAGEF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	6302396	6304052	R	Melanoma-associated antigen F1 {ECO:0000313|EMBL:JAB08615.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040884}  [Source:UniProtKB/TrEMBL;Acc:F7I964]
ENSCJAG00000022233	KNOWN	protein_coding	CAMK2N2	chromosome:C_jacchus3.2.1:15:1:98464013:1	5858463	5858630	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040885}  [Source:UniProtKB/TrEMBL;Acc:F7I962]
ENSCJAG00000011003	NOVEL	pseudogene	ENSCJAG00000011003	scaffold:C_jacchus3.2.1:ACFV01198979.1:1:2261:1	402	1203	R	<no descrition>
ENSCJAG00000015160	KNOWN_BY_PROJECTION	protein_coding	RPS3A	scaffold:C_jacchus3.2.1:GL285644.1:1:20360:1	10142	11032	R	ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
ENSCJAG00000022863	NOVEL	protein_coding	ENSCJAG00000022863	chromosome:C_jacchus3.2.1:13:1:117903854:1	105506562	105506963	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041434}  [Source:UniProtKB/TrEMBL;Acc:F7HFR9]
ENSCJAG00000022878	NOVEL	protein_coding	ENSCJAG00000022878	chromosome:C_jacchus3.2.1:13:1:117903854:1	97759382	97759657	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041449}  [Source:UniProtKB/TrEMBL;Acc:F7HAK6]
ENSCJAG00000022879	NOVEL	protein_coding	ENSCJAG00000022879	chromosome:C_jacchus3.2.1:13:1:117903854:1	95678270	95678772	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041450}  [Source:UniProtKB/TrEMBL;Acc:F7HAG1]
ENSCJAG00000031817	NOVEL	protein_coding	ENSCJAG00000031817	chromosome:C_jacchus3.2.1:13:1:117903854:1	90288391	90288663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049127}  [Source:UniProtKB/TrEMBL;Acc:F7BJW5]
ENSCJAG00000034961	NOVEL	protein_coding	ENSCJAG00000034961	chromosome:C_jacchus3.2.1:13:1:117903854:1	94574215	94574583	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035993}  [Source:UniProtKB/TrEMBL;Acc:F7DLL2]
ENSCJAG00000022501	NOVEL	processed_pseudogene	ENSCJAG00000022501	chromosome:C_jacchus3.2.1:X:1:142054208:1	105184978	105185592	R	<no descrition>
ENSCJAG00000023432	NOVEL	processed_pseudogene	ENSCJAG00000023432	chromosome:C_jacchus3.2.1:X:1:142054208:1	101360740	101362047	D	<no descrition>
ENSCJAG00000023258	NOVEL	processed_pseudogene	ENSCJAG00000023258	chromosome:C_jacchus3.2.1:X:1:142054208:1	69399562	69399942	D	<no descrition>
ENSCJAG00000023354	NOVEL	processed_pseudogene	ENSCJAG00000023354	chromosome:C_jacchus3.2.1:X:1:142054208:1	69086474	69087700	R	<no descrition>
ENSCJAG00000022848	NOVEL	processed_pseudogene	ENSCJAG00000022848	chromosome:C_jacchus3.2.1:X:1:142054208:1	68480659	68481183	R	<no descrition>
ENSCJAG00000022419	NOVEL	processed_pseudogene	ENSCJAG00000022419	chromosome:C_jacchus3.2.1:X:1:142054208:1	65964388	65964615	D	<no descrition>
ENSCJAG00000022418	NOVEL	processed_pseudogene	ENSCJAG00000022418	chromosome:C_jacchus3.2.1:X:1:142054208:1	65899410	65900537	D	<no descrition>
ENSCJAG00000022449	NOVEL	processed_pseudogene	ENSCJAG00000022449	chromosome:C_jacchus3.2.1:X:1:142054208:1	65661254	65662480	R	<no descrition>
ENSCJAG00000022416	NOVEL	processed_pseudogene	ENSCJAG00000022416	chromosome:C_jacchus3.2.1:X:1:142054208:1	65292392	65293309	R	<no descrition>
ENSCJAG00000037743	NOVEL	processed_pseudogene	ENSCJAG00000037743	chromosome:C_jacchus3.2.1:X:1:142054208:1	49915102	49916154	R	<no descrition>
ENSCJAG00000022328	NOVEL	protein_coding	ENSCJAG00000022328	chromosome:C_jacchus3.2.1:X:1:142054208:1	106998274	106998801	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040968}  [Source:UniProtKB/TrEMBL;Acc:F7HPV1]
ENSCJAG00000022474	NOVEL	protein_coding	ENSCJAG00000022474	chromosome:C_jacchus3.2.1:X:1:142054208:1	104799229	104799738	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041087}  [Source:UniProtKB/TrEMBL;Acc:F7FGB5]
ENSCJAG00000023435	KNOWN	protein_coding	SLC25A53	chromosome:C_jacchus3.2.1:X:1:142054208:1	92809094	92810017	R	Solute carrier family 25 member 53 {ECO:0000313|EMBL:JAB25939.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041928}  [Source:UniProtKB/TrEMBL;Acc:F7GUE3]
ENSCJAG00000033569	NOVEL	protein_coding	ENSCJAG00000033569	chromosome:C_jacchus3.2.1:X:1:142054208:1	92699626	92700156	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051156}  [Source:UniProtKB/TrEMBL;Acc:F6Z3P1]
ENSCJAG00000012078	NOVEL	protein_coding	ENSCJAG00000012078	scaffold:C_jacchus3.2.1:ACFV01197328.1:1:4369:1	928	1946	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022165}  [Source:UniProtKB/TrEMBL;Acc:H9KWW1]
ENSCJAG00000003347	KNOWN	protein_coding	RAB9B	chromosome:C_jacchus3.2.1:X:1:142054208:1	92560413	92561135	R	Ras-related protein Rab-9B {ECO:0000313|EMBL:JAB08010.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006073}  [Source:UniProtKB/TrEMBL;Acc:F7GKL9]
ENSCJAG00000032829	NOVEL	protein_coding	ENSCJAG00000032829	scaffold:C_jacchus3.2.1:GL289816.1:1:8841:1	569	2011	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044896}  [Source:UniProtKB/TrEMBL;Acc:H9KY36]
ENSCJAG00000011945	NOVEL	protein_coding	ENSCJAG00000011945	scaffold:C_jacchus3.2.1:ACFV01184401.1:1:16723:1	69	1516	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021928}  [Source:UniProtKB/TrEMBL;Acc:H9KWV4]
ENSCJAG00000032958	NOVEL	protein_coding	ENSCJAG00000032958	scaffold:C_jacchus3.2.1:ACFV01197261.1:1:2784:1	73	822	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024403}  [Source:UniProtKB/TrEMBL;Acc:H9KWZ6]
ENSCJAG00000010989	NOVEL	protein_coding	ENSCJAG00000010989	scaffold:C_jacchus3.2.1:ACFV01196062.1:1:2818:1	2	1646	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020266}  [Source:UniProtKB/TrEMBL;Acc:H9KWR8]
ENSCJAG00000003303	NOVEL	pseudogene	ENSCJAG00000003303	scaffold:C_jacchus3.2.1:ACFV01190418.1:1:6481:1	4594	6479	D	<no descrition>
ENSCJAG00000022882	KNOWN	protein_coding	RAB40AL	chromosome:C_jacchus3.2.1:X:1:142054208:1	91774016	91775043	D	Ras-related protein Rab-40A-like {ECO:0000313|EMBL:JAB43663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041453}  [Source:UniProtKB/TrEMBL;Acc:F7HAE8]
ENSCJAG00000022741	NOVEL	protein_coding	ENSCJAG00000022741	chromosome:C_jacchus3.2.1:X:1:142054208:1	83726738	83727088	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7FFR8]
ENSCJAG00000033365	NOVEL	protein_coding	ENSCJAG00000033365	chromosome:C_jacchus3.2.1:X:1:142054208:1	82180934	82181257	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046688}  [Source:UniProtKB/TrEMBL;Acc:F7IK46]
ENSCJAG00000016318	KNOWN_BY_PROJECTION	protein_coding	MGAT3	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	183837	188785	D	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:7046]
ENSCJAG00000022421	NOVEL	protein_coding	ENSCJAG00000022421	chromosome:C_jacchus3.2.1:X:1:142054208:1	66098732	66099053	D	<no descrition>
ENSCJAG00000022420	KNOWN	protein_coding	ENSCJAG00000022420	chromosome:C_jacchus3.2.1:X:1:142054208:1	66014755	66015215	D	Thymosin beta-10 {ECO:0000313|EMBL:JAB17651.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041042}  [Source:UniProtKB/TrEMBL;Acc:F7FGR8]
ENSCJAG00000022417	NOVEL	protein_coding	ENSCJAG00000022417	chromosome:C_jacchus3.2.1:X:1:142054208:1	65586361	65586777	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041039}  [Source:UniProtKB/TrEMBL;Acc:F7FGS2]
ENSCJAG00000033792	NOVEL	protein_coding	ENSCJAG00000033792	chromosome:C_jacchus3.2.1:X:1:142054208:1	64726713	64727009	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048255}  [Source:UniProtKB/TrEMBL;Acc:F7E5R2]
ENSCJAG00000022015	NOVEL	protein_coding	ENSCJAG00000022015	chromosome:C_jacchus3.2.1:X:1:142054208:1	64131481	64132021	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040685}  [Source:UniProtKB/TrEMBL;Acc:F7I4P6]
ENSCJAG00000000365	NOVEL	protein_coding	ENSCJAG00000000365	chromosome:C_jacchus3.2.1:X:1:142054208:1	50028401	50028949	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000610}  [Source:UniProtKB/TrEMBL;Acc:F6QLQ0]
ENSCJAG00000033989	NOVEL	protein_coding	ENSCJAG00000033989	chromosome:C_jacchus3.2.1:X:1:142054208:1	51156245	51156499	R	40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671}  [Source:UniProtKB/TrEMBL;Acc:F6RZX3]
ENSCJAG00000022248	NOVEL	protein_coding	ENSCJAG00000022248	chromosome:C_jacchus3.2.1:X:1:142054208:1	49962112	49962894	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040900}  [Source:UniProtKB/TrEMBL;Acc:F7I259]
ENSCJAG00000036545	NOVEL	protein_coding	ENSCJAG00000036545	chromosome:C_jacchus3.2.1:X:1:142054208:1	49896057	49896557	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052221}  [Source:UniProtKB/TrEMBL;Acc:F7ILG9]
ENSCJAG00000037688	NOVEL	protein_coding	ENSCJAG00000037688	chromosome:C_jacchus3.2.1:X:1:142054208:1	49250819	49251229	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052151}  [Source:UniProtKB/TrEMBL;Acc:F7I0B9]
ENSCJAG00000021533	KNOWN	protein_coding	RDH13	scaffold:C_jacchus3.2.1:GL285922.1:1:138250:1	53224	59127	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040098}  [Source:UniProtKB/TrEMBL;Acc:H9KXN4]
ENSCJAG00000022472	NOVEL	protein_coding	ENSCJAG00000022472	chromosome:C_jacchus3.2.1:X:1:142054208:1	47817279	47817428	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041085}  [Source:UniProtKB/TrEMBL;Acc:F7FGC4]
ENSCJAG00000005054	KNOWN_BY_PROJECTION	protein_coding	ACSM4	chromosome:C_jacchus3.2.1:9:1:124281992:1	19182883	19207109	D	acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
ENSCJAG00000032689	NOVEL	protein_coding	ENSCJAG00000032689	chromosome:C_jacchus3.2.1:X:1:142054208:1	46524184	46524588	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041737}  [Source:UniProtKB/TrEMBL;Acc:F7GH47]
ENSCJAG00000022471	KNOWN_BY_PROJECTION	protein_coding	ERAS	chromosome:C_jacchus3.2.1:X:1:142054208:1	47478309	47479575	D	ES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]
ENSCJAG00000034118	NOVEL	protein_coding	ENSCJAG00000034118	scaffold:C_jacchus3.2.1:GL288711.1:1:15713:1	3978	5285	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000006}  [Source:UniProtKB/TrEMBL;Acc:H9KVI9]
ENSCJAG00000022349	NOVEL	processed_pseudogene	ENSCJAG00000022349	chromosome:C_jacchus3.2.1:19:1:49578535:1	21746556	21747035	R	<no descrition>
ENSCJAG00000034498	NOVEL	processed_pseudogene	ENSCJAG00000034498	chromosome:C_jacchus3.2.1:19:1:49578535:1	21582251	21582619	R	<no descrition>
ENSCJAG00000001918	NOVEL	protein_coding	ENSCJAG00000001918	scaffold:C_jacchus3.2.1:ACFV01202375.1:1:2103:1	402	1811	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003450}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ1]
ENSCJAG00000032583	NOVEL	protein_coding	ENSCJAG00000032583	chromosome:C_jacchus3.2.1:9:1:124281992:1	19142746	19143684	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049944}  [Source:UniProtKB/TrEMBL;Acc:F7CQ68]
ENSCJAG00000033084	NOVEL	protein_coding	ENSCJAG00000033084	scaffold:C_jacchus3.2.1:ACFV01198485.1:1:2273:1	204	714	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051052}  [Source:UniProtKB/TrEMBL;Acc:H9KYI5]
ENSCJAG00000017871	KNOWN_BY_PROJECTION	protein_coding	C6orf203	scaffold:C_jacchus3.2.1:GL285036.1:1:20575:1	9746	13375	D	chromosome 6 open reading frame 203 [Source:HGNC Symbol;Acc:HGNC:17971]
ENSCJAG00000023083	NOVEL	processed_pseudogene	ENSCJAG00000023083	chromosome:C_jacchus3.2.1:19:1:49578535:1	12284156	12284590	D	<no descrition>
ENSCJAG00000013032	NOVEL	processed_pseudogene	ENSCJAG00000013032	chromosome:C_jacchus3.2.1:19:1:49578535:1	2980390	2980737	R	<no descrition>
ENSCJAG00000008986	KNOWN	protein_coding	MRPS14	chromosome:C_jacchus3.2.1:18:1:47448759:1	31969374	31990955	D	28S ribosomal protein S14, mitochondrial {ECO:0000313|EMBL:JAB04352.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016436}  [Source:UniProtKB/TrEMBL;Acc:F6Y2W4]
ENSCJAG00000022066	NOVEL	processed_pseudogene	ENSCJAG00000022066	chromosome:C_jacchus3.2.1:20:1:44557958:1	28402994	28403454	D	<no descrition>
ENSCJAG00000022100	NOVEL	processed_pseudogene	ENSCJAG00000022100	chromosome:C_jacchus3.2.1:20:1:44557958:1	23451904	23452485	R	<no descrition>
ENSCJAG00000005366	KNOWN_BY_PROJECTION	protein_coding	DVL1	scaffold:C_jacchus3.2.1:GL286591.1:1:29998:1	22351	24451	R	dishevelled segment polarity protein 1 [Source:HGNC Symbol;Acc:HGNC:3084]
ENSCJAG00000022847	NOVEL	processed_pseudogene	ENSCJAG00000022847	chromosome:C_jacchus3.2.1:20:1:44557958:1	12720223	12720516	R	<no descrition>
ENSCJAG00000022827	NOVEL	processed_pseudogene	ENSCJAG00000022827	chromosome:C_jacchus3.2.1:20:1:44557958:1	11573531	11573800	R	<no descrition>
ENSCJAG00000014499	KNOWN_BY_PROJECTION	protein_coding	TELO2	chromosome:C_jacchus3.2.1:12:1:121768101:1	1558340	1576400	D	telomere maintenance 2 [Source:HGNC Symbol;Acc:HGNC:29099]
ENSCJAG00000019819	KNOWN_BY_PROJECTION	protein_coding	OR4F6	scaffold:C_jacchus3.2.1:GL285223.1:1:22045:1	16788	17792	D	olfactory receptor, family 4, subfamily F, member 6 [Source:HGNC Symbol;Acc:HGNC:15372]
ENSCJAG00000008979	NOVEL	protein_coding	ENSCJAG00000008979	chromosome:C_jacchus3.2.1:18:1:47448759:1	31953852	31956430	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016429}  [Source:UniProtKB/TrEMBL;Acc:F6Y3M5]
ENSCJAG00000022315	NOVEL	protein_coding	ENSCJAG00000022315	chromosome:C_jacchus3.2.1:19:1:49578535:1	22073186	22073581	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040955}  [Source:UniProtKB/TrEMBL;Acc:F7HUZ3]
ENSCJAG00000005099	NOVEL	protein_coding	ENSCJAG00000005099	chromosome:C_jacchus3.2.1:19:1:49578535:1	21941181	21941291	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009312}  [Source:UniProtKB/TrEMBL;Acc:F7D6G7]
ENSCJAG00000035488	KNOWN_BY_PROJECTION	protein_coding	AKAP17A	scaffold:C_jacchus3.2.1:ACFV01197329.1:1:2332:1	82	2321	R	A kinase (PRKA) anchor protein 17A [Source:HGNC Symbol;Acc:HGNC:18783]
ENSCJAG00000023047	NOVEL	protein_coding	ENSCJAG00000023047	chromosome:C_jacchus3.2.1:19:1:49578535:1	17561338	17562177	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043156}  [Source:UniProtKB/TrEMBL;Acc:F7IM64]
ENSCJAG00000035381	NOVEL	protein_coding	ENSCJAG00000035381	scaffold:C_jacchus3.2.1:GL285067.1:1:59576:1	27172	35227	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007499}  [Source:UniProtKB/TrEMBL;Acc:H9KW37]
ENSCJAG00000003706	NOVEL	pseudogene	ENSCJAG00000003706	scaffold:C_jacchus3.2.1:GL286972.1:1:5922:1	2450	3087	R	<no descrition>
ENSCJAG00000022507	NOVEL	protein_coding	ENSCJAG00000022507	scaffold:C_jacchus3.2.1:ACFV01195001.1:1:2706:1	434	784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041114}  [Source:UniProtKB/TrEMBL;Acc:H9KXS8]
ENSCJAG00000004968	KNOWN	protein_coding	PEX5	chromosome:C_jacchus3.2.1:9:1:124281992:1	19081548	19112119	D	Peroxisomal biogenesis factor 5 isoform d {ECO:0000313|EMBL:JAB11427.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009172}  [Source:UniProtKB/TrEMBL;Acc:F7IKI1]
ENSCJAG00000022547	NOVEL	protein_coding	ENSCJAG00000022547	chromosome:C_jacchus3.2.1:20:1:44557958:1	35615141	35615691	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041154}  [Source:UniProtKB/TrEMBL;Acc:F7DX30]
ENSCJAG00000035425	NOVEL	protein_coding	ENSCJAG00000035425	chromosome:C_jacchus3.2.1:20:1:44557958:1	35611585	35612280	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050818}  [Source:UniProtKB/TrEMBL;Acc:F7GMC3]
ENSCJAG00000022548	NOVEL	protein_coding	ENSCJAG00000022548	chromosome:C_jacchus3.2.1:20:1:44557958:1	34458793	34459254	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041155}  [Source:UniProtKB/TrEMBL;Acc:F7DX26]
ENSCJAG00000031650	NOVEL	protein_coding	ENSCJAG00000031650	chromosome:C_jacchus3.2.1:20:1:44557958:1	30094359	30095036	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042573}  [Source:UniProtKB/TrEMBL;Acc:F6UIW5]
ENSCJAG00000014497	KNOWN_BY_PROJECTION	protein_coding	PTX4	chromosome:C_jacchus3.2.1:12:1:121768101:1	1551755	1554641	R	pentraxin 4, long [Source:HGNC Symbol;Acc:HGNC:14171]
ENSCJAG00000022065	NOVEL	protein_coding	ENSCJAG00000022065	chromosome:C_jacchus3.2.1:20:1:44557958:1	29022504	29023657	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040729}  [Source:UniProtKB/TrEMBL;Acc:F7HV75]
ENSCJAG00000022067	NOVEL	protein_coding	ENSCJAG00000022067	chromosome:C_jacchus3.2.1:20:1:44557958:1	28091482	28091877	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040731}  [Source:UniProtKB/TrEMBL;Acc:F7HV51]
ENSCJAG00000022070	NOVEL	protein_coding	ENSCJAG00000022070	chromosome:C_jacchus3.2.1:20:1:44557958:1	26773108	26774467	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040734}  [Source:UniProtKB/TrEMBL;Acc:F7HV47]
ENSCJAG00000033007	KNOWN	protein_coding	ATXN1L	chromosome:C_jacchus3.2.1:20:1:44557958:1	26465935	26468004	R	Ataxin-1-like {ECO:0000313|EMBL:JAB09742.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042034}  [Source:UniProtKB/TrEMBL;Acc:F6RTB4]
ENSCJAG00000022071	NOVEL	protein_coding	ENSCJAG00000022071	chromosome:C_jacchus3.2.1:20:1:44557958:1	26326754	26327152	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7HV45]
ENSCJAG00000022075	NOVEL	protein_coding	ENSCJAG00000022075	chromosome:C_jacchus3.2.1:20:1:44557958:1	20145331	20145921	R	Ribosomal protein L19 {ECO:0000256|RuleBase:RU000574}  [Source:UniProtKB/TrEMBL;Acc:F7HV41]
ENSCJAG00000023015	NOVEL	protein_coding	ENSCJAG00000023015	chromosome:C_jacchus3.2.1:20:1:44557958:1	2428090	2428305	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041561}  [Source:UniProtKB/TrEMBL;Acc:F7FEZ7]
ENSCJAG00000031733	NOVEL	protein_coding	ENSCJAG00000031733	chromosome:C_jacchus3.2.1:20:1:44557958:1	3144326	3144523	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048337}  [Source:UniProtKB/TrEMBL;Acc:F7GSW9]
ENSCJAG00000014379	KNOWN_BY_PROJECTION	protein_coding	CCDC154	chromosome:C_jacchus3.2.1:12:1:121768101:1	1496773	1507253	R	coiled-coil domain containing 154 [Source:HGNC Symbol;Acc:HGNC:34454]
ENSCJAG00000036370	KNOWN_BY_PROJECTION	protein_coding	C17orf51	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	640677	640916	D	chromosome 17 open reading frame 51 [Source:HGNC Symbol;Acc:HGNC:27904]
ENSCJAG00000020335	NOVEL	protein_coding	ENSCJAG00000020335	scaffold:C_jacchus3.2.1:ACFV01185342.1:1:12379:1	6234	11444	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037796}  [Source:UniProtKB/TrEMBL;Acc:H9KXL0]
ENSCJAG00000036576	NOVEL	protein_coding	ENSCJAG00000036576	chromosome:C_jacchus3.2.1:21:1:50472720:1	47062571	47062804	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052082}  [Source:UniProtKB/TrEMBL;Acc:F7IEN0]
ENSCJAG00000002854	NOVEL	protein_coding	ENSCJAG00000002854	chromosome:C_jacchus3.2.1:21:1:50472720:1	38450346	38450765	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005188}  [Source:UniProtKB/TrEMBL;Acc:F7ICJ4]
ENSCJAG00000022487	KNOWN_BY_PROJECTION	protein_coding	C21orf140	chromosome:C_jacchus3.2.1:21:1:50472720:1	38433307	38434062	R	chromosome 21 open reading frame 140 [Source:HGNC Symbol;Acc:HGNC:39602]
ENSCJAG00000002160	NOVEL	protein_coding	ENSCJAG00000002160	scaffold:C_jacchus3.2.1:GL284777.1:1:24108:1	3118	4200	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003879}  [Source:UniProtKB/TrEMBL;Acc:H9KVR7]
ENSCJAG00000014406	KNOWN	protein_coding	C16ORF91	chromosome:C_jacchus3.2.1:12:1:121768101:1	1484506	1492321	R	Protein CCSMST1 {ECO:0000313|EMBL:JAB03029.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026507}  [Source:UniProtKB/TrEMBL;Acc:F7IL19]
ENSCJAG00000035496	NOVEL	protein_coding	ENSCJAG00000035496	scaffold:C_jacchus3.2.1:GL285880.1:1:16703:1	679	1116	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049073}  [Source:UniProtKB/TrEMBL;Acc:H9KYD2]
ENSCJAG00000022607	NOVEL	protein_coding	RPS27	chromosome:C_jacchus3.2.1:21:1:50472720:1	36317450	36317704	R	40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671}  [Source:UniProtKB/TrEMBL;Acc:B0VXF6]
ENSCJAG00000020332	KNOWN	protein_coding	MYBBP1A	scaffold:C_jacchus3.2.1:ACFV01185342.1:1:12379:1	22	4873	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037792}  [Source:UniProtKB/TrEMBL;Acc:H9KXK9]
ENSCJAG00000031366	NOVEL	protein_coding	ENSCJAG00000031366	chromosome:C_jacchus3.2.1:21:1:50472720:1	34909291	34910070	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042651}  [Source:UniProtKB/TrEMBL;Acc:F6ZPA0]
ENSCJAG00000013151	KNOWN_BY_PROJECTION	protein_coding	UNKL	chromosome:C_jacchus3.2.1:12:1:121768101:1	1421653	1477039	R	unkempt family zinc finger-like [Source:HGNC Symbol;Acc:HGNC:14184]
ENSCJAG00000023152	NOVEL	processed_pseudogene	ENSCJAG00000023152	chromosome:C_jacchus3.2.1:3:1:190850796:1	112272554	112273708	R	<no descrition>
ENSCJAG00000022050	NOVEL	processed_pseudogene	ENSCJAG00000022050	chromosome:C_jacchus3.2.1:3:1:190850796:1	111422782	111423261	R	<no descrition>
ENSCJAG00000022896	NOVEL	processed_pseudogene	ENSCJAG00000022896	chromosome:C_jacchus3.2.1:3:1:190850796:1	80824532	80824915	R	<no descrition>
ENSCJAG00000007153	NOVEL	protein_coding	ENSCJAG00000007153	scaffold:C_jacchus3.2.1:GL285858.1:1:87957:1	17657	19511	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013286}  [Source:UniProtKB/TrEMBL;Acc:H9KWD0]
ENSCJAG00000032090	NOVEL	processed_pseudogene	ENSCJAG00000032090	chromosome:C_jacchus3.2.1:3:1:190850796:1	28916340	28916882	R	<no descrition>
ENSCJAG00000021871	NOVEL	protein_coding	ENSCJAG00000021871	chromosome:C_jacchus3.2.1:3:1:190850796:1	142821114	142822764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040563}  [Source:UniProtKB/TrEMBL;Acc:F7IQW7]
ENSCJAG00000021870	NOVEL	protein_coding	ENSCJAG00000021870	chromosome:C_jacchus3.2.1:3:1:190850796:1	140732610	140733112	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040562}  [Source:UniProtKB/TrEMBL;Acc:F7IQW8]
ENSCJAG00000011563	NOVEL	protein_coding	ENSCJAG00000011563	scaffold:C_jacchus3.2.1:GL285902.1:1:4718:1	279	999	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021240}  [Source:UniProtKB/TrEMBL;Acc:H9KWU6]
ENSCJAG00000033223	NOVEL	protein_coding	ENSCJAG00000033223	chromosome:C_jacchus3.2.1:3:1:190850796:1	139605839	139606090	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048554}  [Source:UniProtKB/TrEMBL;Acc:F7F924]
ENSCJAG00000021868	NOVEL	protein_coding	ENSCJAG00000021868	chromosome:C_jacchus3.2.1:3:1:190850796:1	137131727	137132155	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040560}  [Source:UniProtKB/TrEMBL;Acc:F7IQW9]
ENSCJAG00000013166	KNOWN	protein_coding	GNPTG	chromosome:C_jacchus3.2.1:12:1:121768101:1	1385656	1418230	D	N-acetylglucosamine-1-phosphotransferase subunit gamma {ECO:0000313|EMBL:JAB04163.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024200}  [Source:UniProtKB/TrEMBL;Acc:F7GT70]
ENSCJAG00000012251	NOVEL	protein_coding	ENSCJAG00000012251	chromosome:C_jacchus3.2.1:3:1:190850796:1	136161628	136161936	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022456}  [Source:UniProtKB/TrEMBL;Acc:F7ISF1]
ENSCJAG00000022059	NOVEL	protein_coding	ENSCJAG00000022059	chromosome:C_jacchus3.2.1:3:1:190850796:1	123906424	123907221	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040723}  [Source:UniProtKB/TrEMBL;Acc:F7HV87]
ENSCJAG00000035174	NOVEL	protein_coding	ENSCJAG00000035174	chromosome:C_jacchus3.2.1:3:1:190850796:1	126863917	126865905	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043522}  [Source:UniProtKB/TrEMBL;Acc:F7HSI1]
ENSCJAG00000005258	KNOWN_BY_PROJECTION	protein_coding	ZNF738	scaffold:C_jacchus3.2.1:ACFV01178998.1:1:19143:1	2960	4035	R	zinc finger protein 738 [Source:HGNC Symbol;Acc:HGNC:32469]
ENSCJAG00000002940	KNOWN_BY_PROJECTION	protein_coding	P4HB	scaffold:C_jacchus3.2.1:GL287821.1:1:70426:1	20552	22343	D	prolyl 4-hydroxylase, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:8548]
ENSCJAG00000007752	NOVEL	protein_coding	ENSCJAG00000007752	scaffold:C_jacchus3.2.1:ACFV01191568.1:1:8088:1	4265	7030	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014365}  [Source:UniProtKB/TrEMBL;Acc:H9KWF9]
ENSCJAG00000034935	NOVEL	pseudogene	ENSCJAG00000034935	scaffold:C_jacchus3.2.1:GL286226.1:1:129224:1	88517	89149	R	<no descrition>
ENSCJAG00000035392	NOVEL	protein_coding	ENSCJAG00000035392	scaffold:C_jacchus3.2.1:ACFV01188812.1:1:7130:1	904	2034	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016998}  [Source:UniProtKB/TrEMBL;Acc:H9KWK4]
ENSCJAG00000035485	NOVEL	pseudogene	ENSCJAG00000035485	scaffold:C_jacchus3.2.1:ACFV01185269.1:1:7025:1	1341	3098	D	<no descrition>
ENSCJAG00000004712	KNOWN_BY_PROJECTION	protein_coding	PBX1	chromosome:C_jacchus3.2.1:18:1:47448759:1	41023948	41369087	R	pre-B-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
ENSCJAG00000009902	NOVEL	protein_coding	ENSCJAG00000009902	scaffold:C_jacchus3.2.1:GL286246.1:1:68537:1	26391	28370	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018161}  [Source:UniProtKB/TrEMBL;Acc:H9KWM4]
ENSCJAG00000013690	NOVEL	protein_coding	ENSCJAG00000013690	scaffold:C_jacchus3.2.1:GL286263.1:1:45055:1	22917	25880	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025178}  [Source:UniProtKB/TrEMBL;Acc:H9KX10]
ENSCJAG00000032954	NOVEL	protein_coding	ENSCJAG00000032954	scaffold:C_jacchus3.2.1:GL286263.1:1:45055:1	17026	18217	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046238}  [Source:UniProtKB/TrEMBL;Acc:H9KY63]
ENSCJAG00000031897	NOVEL	protein_coding	ENSCJAG00000031897	scaffold:C_jacchus3.2.1:GL285831.1:1:26162:1	13544	14347	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048367}  [Source:UniProtKB/TrEMBL;Acc:H9KYB8]
ENSCJAG00000034079	NOVEL	protein_coding	ENSCJAG00000034079	scaffold:C_jacchus3.2.1:ACFV01187211.1:1:9086:1	3092	4557	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051796}  [Source:UniProtKB/TrEMBL;Acc:H9KYK2]
ENSCJAG00000014407	KNOWN	protein_coding	TCEA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	6873538	6931849	R	Transcription elongation factor A protein 1 isoform 2 {ECO:0000313|EMBL:JAB24016.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026542}  [Source:UniProtKB/TrEMBL;Acc:F7IE01]
ENSCJAG00000005780	KNOWN	protein_coding	ACSL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	4601865	4674386	D	Callithrix jacchus acyl-CoA synthetase long-chain family member 1 (ACSL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001257202]
ENSCJAG00000032804	NOVEL	protein_coding	ENSCJAG00000032804	scaffold:C_jacchus3.2.1:GL286248.1:1:69697:1	62767	64222	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047320}  [Source:UniProtKB/TrEMBL;Acc:H9KY91]
ENSCJAG00000032876	NOVEL	pseudogene	ENSCJAG00000032876	scaffold:C_jacchus3.2.1:GL286742.1:1:12581:1	959	1278	D	<no descrition>
ENSCJAG00000031769	NOVEL	protein_coding	ENSCJAG00000031769	scaffold:C_jacchus3.2.1:GL286766.1:1:12636:1	2053	3691	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051345}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ4]
ENSCJAG00000036014	NOVEL	pseudogene	ENSCJAG00000036014	scaffold:C_jacchus3.2.1:ACFV01198315.1:1:2049:1	949	1076	R	<no descrition>
ENSCJAG00000014461	KNOWN	protein_coding	RGS20	chromosome:C_jacchus3.2.1:16:1:96796970:1	6765420	6866486	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026616}  [Source:UniProtKB/TrEMBL;Acc:F7I246]
ENSCJAG00000034455	KNOWN_BY_PROJECTION	protein_coding	IGHV3-13	scaffold:C_jacchus3.2.1:ACFV01198906.1:1:2452:1	1274	1951	D	immunoglobulin heavy variable 3-13 [Source:HGNC Symbol;Acc:HGNC:5581]
ENSCJAG00000004653	KNOWN_BY_PROJECTION	protein_coding	LRRC52	chromosome:C_jacchus3.2.1:18:1:47448759:1	40352785	40374066	R	leucine rich repeat containing 52 [Source:HGNC Symbol;Acc:HGNC:32156]
ENSCJAG00000005855	NOVEL	pseudogene	ENSCJAG00000005855	chromosome:C_jacchus3.2.1:3:1:190850796:1	4482387	4483395	R	<no descrition>
ENSCJAG00000004619	KNOWN	protein_coding	MGST3	chromosome:C_jacchus3.2.1:18:1:47448759:1	40269440	40297268	R	Microsomal glutathione S-transferase 3 {ECO:0000313|EMBL:JAB03868.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008413}  [Source:UniProtKB/TrEMBL;Acc:F7IHT1]
ENSCJAG00000019976	KNOWN_BY_PROJECTION	protein_coding	SEC14L5	chromosome:C_jacchus3.2.1:12:1:121768101:1	5058250	5117633	D	SEC14-like 5 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29032]
ENSCJAG00000013038	NOVEL	protein_coding	ENSCJAG00000013038	scaffold:C_jacchus3.2.1:GL285589.1:1:30827:1	19911	29305	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023948}  [Source:UniProtKB/TrEMBL;Acc:H9KWY5]
ENSCJAG00000005863	KNOWN_BY_PROJECTION	protein_coding	HELT	chromosome:C_jacchus3.2.1:3:1:190850796:1	4449723	4451670	R	helt bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:33783]
ENSCJAG00000005859	NOVEL	protein_coding	ENSCJAG00000005859	chromosome:C_jacchus3.2.1:3:1:190850796:1	4474923	4475629	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010742}  [Source:UniProtKB/TrEMBL;Acc:F7IFH6]
ENSCJAG00000017762	KNOWN	protein_coding	YAF2	chromosome:C_jacchus3.2.1:9:1:124281992:1	29279184	29355732	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032762}; YY1-associated factor 2 isoform 1 {ECO:0000313|EMBL:JAB14184.1}  [Source:UniProtKB/TrEMBL;Acc:F7G8S5]
ENSCJAG00000004575	KNOWN_BY_PROJECTION	protein_coding	ALDH9A1	chromosome:C_jacchus3.2.1:18:1:47448759:1	40235557	40262032	D	aldehyde dehydrogenase 9 family, member A1 [Source:HGNC Symbol;Acc:HGNC:412]
ENSCJAG00000005873	KNOWN	protein_coding	SNX25	chromosome:C_jacchus3.2.1:3:1:190850796:1	4107015	4269451	R	Sorting nexin-25 {ECO:0000313|EMBL:JAB30222.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010864}  [Source:UniProtKB/TrEMBL;Acc:F7HTE6]
ENSCJAG00000014482	KNOWN	protein_coding	ATP6V1H	chromosome:C_jacchus3.2.1:16:1:96796970:1	6652317	6756863	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026682}; V-type proton ATPase subunit H isoform 2 {ECO:0000313|EMBL:JAB01981.1}  [Source:UniProtKB/TrEMBL;Acc:F7HPQ6]
ENSCJAG00000019959	KNOWN_BY_PROJECTION	protein_coding	PPL	chromosome:C_jacchus3.2.1:12:1:121768101:1	4973845	5060652	R	periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
ENSCJAG00000007951	NOVEL	pseudogene	ENSCJAG00000007951	scaffold:C_jacchus3.2.1:GL286438.1:1:112050:1	16970	17668	D	<no descrition>
ENSCJAG00000022619	NOVEL	pseudogene	ENSCJAG00000022619	scaffold:C_jacchus3.2.1:GL286214.1:1:81433:1	34410	35313	R	<no descrition>
ENSCJAG00000005918	KNOWN	protein_coding	LRP2BP	chromosome:C_jacchus3.2.1:3:1:190850796:1	4064587	4103643	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010903}  [Source:UniProtKB/TrEMBL;Acc:F7IJZ3]
ENSCJAG00000003809	NOVEL	pseudogene	ENSCJAG00000003809	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	18568	19256	R	<no descrition>
ENSCJAG00000003805	NOVEL	pseudogene	ENSCJAG00000003805	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	16705	17423	R	<no descrition>
ENSCJAG00000014520	KNOWN_BY_PROJECTION	protein_coding	OPRK1	chromosome:C_jacchus3.2.1:16:1:96796970:1	6204278	6226057	R	opioid receptor, kappa 1 [Source:HGNC Symbol;Acc:HGNC:8154]
ENSCJAG00000005934	KNOWN_BY_PROJECTION	protein_coding	ANKRD37	chromosome:C_jacchus3.2.1:3:1:190850796:1	4059853	4063861	R	ankyrin repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:29593]
ENSCJAG00000034222	NOVEL	protein_coding	ENSCJAG00000034222	scaffold:C_jacchus3.2.1:ACFV01201075.1:1:2870:1	884	1960	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006455}  [Source:UniProtKB/TrEMBL;Acc:H9KW09]
ENSCJAG00000001767	NOVEL	pseudogene	ENSCJAG00000001767	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	469034	469523	R	<no descrition>
ENSCJAG00000002076	NOVEL	protein_coding	ENSCJAG00000002076	scaffold:C_jacchus3.2.1:ACFV01179890.1:1:21480:1	13320	16024	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003752}  [Source:UniProtKB/TrEMBL;Acc:H9KVR2]
ENSCJAG00000004561	KNOWN_BY_PROJECTION	protein_coding	TMCO1	chromosome:C_jacchus3.2.1:18:1:47448759:1	40171993	40201742	D	transmembrane and coiled-coil domains 1 [Source:HGNC Symbol;Acc:HGNC:18188]
ENSCJAG00000037331	NOVEL	pseudogene	ENSCJAG00000037331	scaffold:C_jacchus3.2.1:ACFV01192270.1:1:4068:1	1910	2746	R	<no descrition>
ENSCJAG00000004574	NOVEL	protein_coding	ENSCJAG00000004574	scaffold:C_jacchus3.2.1:ACFV01183261.1:1:11242:1	164	10665	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008301}  [Source:UniProtKB/TrEMBL;Acc:H9KW45]
ENSCJAG00000005969	KNOWN	protein_coding	C4ORF47	chromosome:C_jacchus3.2.1:3:1:190850796:1	3984101	4010002	R	UPF0602 protein C4orf47 {ECO:0000313|EMBL:JAB12767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010977}  [Source:UniProtKB/TrEMBL;Acc:F7IAN4]
ENSCJAG00000012120	KNOWN_BY_PROJECTION	protein_coding	EIF1	scaffold:C_jacchus3.2.1:GL286451.1:1:524562:1	484010	486885	R	eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:HGNC:3249]
ENSCJAG00000005979	KNOWN	protein_coding	CCDC110	chromosome:C_jacchus3.2.1:3:1:190850796:1	3963982	3986162	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011010}  [Source:UniProtKB/TrEMBL;Acc:F7IN34]
ENSCJAG00000032787	NOVEL	protein_coding	ENSCJAG00000032787	scaffold:C_jacchus3.2.1:GL286477.1:1:60449:1	27279	27994	D	40S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}  [Source:UniProtKB/TrEMBL;Acc:H9KY89]
ENSCJAG00000007870	NOVEL	protein_coding	ENSCJAG00000007870	scaffold:C_jacchus3.2.1:GL286569.1:1:24263:1	9946	11548	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014583}  [Source:UniProtKB/TrEMBL;Acc:H9KWG8]
ENSCJAG00000014677	NOVEL	protein_coding	ENSCJAG00000014677	scaffold:C_jacchus3.2.1:GL285848.1:1:76306:1	73054	73551	R	<no descrition>
ENSCJAG00000017523	NOVEL	protein_coding	ENSCJAG00000017523	scaffold:C_jacchus3.2.1:ACFV01192264.1:1:4972:1	1407	1947	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032288}  [Source:UniProtKB/TrEMBL;Acc:H9KXB7]
ENSCJAG00000008987	NOVEL	protein_coding	ENSCJAG00000008987	scaffold:C_jacchus3.2.1:GL290236.1:1:6048:1	15	720	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016442}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ3]
ENSCJAG00000018737	KNOWN_BY_PROJECTION	protein_coding	RPH3AL	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	371597	397966	D	rabphilin 3A-like (without C2 domains) [Source:HGNC Symbol;Acc:HGNC:10296]
ENSCJAG00000006742	KNOWN_BY_PROJECTION	protein_coding	ZNF774	scaffold:C_jacchus3.2.1:ACFV01198202.1:1:2987:1	338	2767	D	zinc finger protein 774 [Source:HGNC Symbol;Acc:HGNC:33108]
ENSCJAG00000017726	KNOWN	protein_coding	PPHLN1	chromosome:C_jacchus3.2.1:9:1:124281992:1	29039116	29171442	R	Periphilin-1 isoform 2 {ECO:0000313|EMBL:JAB20658.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027397}  [Source:UniProtKB/TrEMBL;Acc:F7HA24]
ENSCJAG00000003113	KNOWN_BY_PROJECTION	protein_coding	TMEM87A	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	722626	748147	R	transmembrane protein 87A [Source:HGNC Symbol;Acc:HGNC:24522]
ENSCJAG00000007820	KNOWN	protein_coding	FLCN	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	66213	84887	D	Folliculin isoform 1 {ECO:0000313|EMBL:JAB07881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014521}  [Source:UniProtKB/TrEMBL;Acc:H9KWG7]
ENSCJAG00000017212	KNOWN_BY_PROJECTION	protein_coding	ILDR2	chromosome:C_jacchus3.2.1:18:1:47448759:1	39270460	39310605	D	immunoglobulin-like domain containing receptor 2 [Source:HGNC Symbol;Acc:HGNC:18131]
ENSCJAG00000007814	KNOWN_BY_PROJECTION	protein_coding	PLD6	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	90241	93893	D	phospholipase D family, member 6 [Source:HGNC Symbol;Acc:HGNC:30447]
ENSCJAG00000007703	NOVEL	protein_coding	ENSCJAG00000007703	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	236817	237674	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014262}  [Source:UniProtKB/TrEMBL;Acc:H9KWF7]
ENSCJAG00000021709	NOVEL	protein_coding	ENSCJAG00000021709	scaffold:C_jacchus3.2.1:ACFV01195434.1:1:2256:1	1007	2169	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040421}  [Source:UniProtKB/TrEMBL;Acc:H9KXP2]
ENSCJAG00000005997	KNOWN	protein_coding	PDLIM3	chromosome:C_jacchus3.2.1:3:1:190850796:1	3913377	3949189	D	PDZ and LIM domain protein 3 isoform b {ECO:0000313|EMBL:JAB16165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011037}  [Source:UniProtKB/TrEMBL;Acc:F7IKP8]
ENSCJAG00000017185	KNOWN_BY_PROJECTION	protein_coding	MAEL	chromosome:C_jacchus3.2.1:18:1:47448759:1	39200575	39237706	R	maelstrom spermatogenic transposon silencer [Source:HGNC Symbol;Acc:HGNC:25929]
ENSCJAG00000032502	KNOWN_BY_PROJECTION	protein_coding	SLC25A2	scaffold:C_jacchus3.2.1:ACFV01202348.1:1:2236:1	654	1995	D	solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 [Source:HGNC Symbol;Acc:HGNC:22921]
ENSCJAG00000019769	NOVEL	protein_coding	ENSCJAG00000019769	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	417231	420049	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050478}  [Source:UniProtKB/TrEMBL;Acc:H9KYG9]
ENSCJAG00000005801	KNOWN_BY_PROJECTION	protein_coding	HAPLN4	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	17768	25763	R	hyaluronan and proteoglycan link protein 4 [Source:HGNC Symbol;Acc:HGNC:31357]
ENSCJAG00000000210	KNOWN	protein_coding	AGL	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	290629	308810	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000395}  [Source:UniProtKB/TrEMBL;Acc:H9KVJ6]
ENSCJAG00000032588	NOVEL	pseudogene	ENSCJAG00000032588	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	58646	59124	R	<no descrition>
ENSCJAG00000000050	NOVEL	pseudogene	ENSCJAG00000000050	scaffold:C_jacchus3.2.1:GL286567.1:1:46411:1	42518	43093	R	<no descrition>
ENSCJAG00000014671	NOVEL	pseudogene	ENSCJAG00000014671	chromosome:C_jacchus3.2.1:16:1:96796970:1	4711680	4712484	D	<no descrition>
ENSCJAG00000031114	NOVEL	protein_coding	ENSCJAG00000031114	chromosome:C_jacchus3.2.1:16:1:96796970:1	4571537	4573294	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043739}  [Source:UniProtKB/TrEMBL;Acc:F7HLG4]
ENSCJAG00000019889	KNOWN	protein_coding	SEPT12	chromosome:C_jacchus3.2.1:12:1:121768101:1	4869896	4882464	R	Septin-12 isoform 2 {ECO:0000313|EMBL:JAB02161.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036992}  [Source:UniProtKB/TrEMBL;Acc:F6PWH0]
ENSCJAG00000014693	NOVEL	pseudogene	ENSCJAG00000014693	chromosome:C_jacchus3.2.1:16:1:96796970:1	4493648	4494246	R	<no descrition>
ENSCJAG00000014675	KNOWN_BY_PROJECTION	protein_coding	PXDNL	chromosome:C_jacchus3.2.1:16:1:96796970:1	4178999	4702420	R	peroxidasin-like [Source:HGNC Symbol;Acc:HGNC:26359]
ENSCJAG00000019877	KNOWN_BY_PROJECTION	protein_coding	C16orf71	chromosome:C_jacchus3.2.1:12:1:121768101:1	4828550	4846906	D	chromosome 16 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:25081]
ENSCJAG00000015678	KNOWN	protein_coding	SNTG1	chromosome:C_jacchus3.2.1:16:1:96796970:1	3251331	3649354	D	Gamma-1-syntrophin {ECO:0000313|EMBL:JAB26394.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028860}  [Source:UniProtKB/TrEMBL;Acc:F6W5Z1]
ENSCJAG00000007788	NOVEL	protein_coding	ENSCJAG00000007788	scaffold:C_jacchus3.2.1:GL286033.1:1:20662:1	17591	18796	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049962}  [Source:UniProtKB/TrEMBL;Acc:H9KYF7]
ENSCJAG00000013458	KNOWN_BY_PROJECTION	protein_coding	ADAMTS20	chromosome:C_jacchus3.2.1:9:1:124281992:1	27766741	27996204	D	ADAM metallopeptidase with thrombospondin type 1 motif, 20 [Source:HGNC Symbol;Acc:HGNC:17178]
ENSCJAG00000011151	KNOWN_BY_PROJECTION	protein_coding	TMED9	scaffold:C_jacchus3.2.1:GL284852.1:1:101615:1	59836	63779	R	transmembrane emp24 protein transport domain containing 9 [Source:HGNC Symbol;Acc:HGNC:24878]
ENSCJAG00000017095	KNOWN_BY_PROJECTION	protein_coding	POU2F1	chromosome:C_jacchus3.2.1:18:1:47448759:1	38817142	39000329	R	POU class 2 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9212]
ENSCJAG00000019862	KNOWN_BY_PROJECTION	protein_coding	ANKS3	chromosome:C_jacchus3.2.1:12:1:121768101:1	4788032	4828511	R	ankyrin repeat and sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29422]
ENSCJAG00000036208	NOVEL	pseudogene	ENSCJAG00000036208	scaffold:C_jacchus3.2.1:ACFV01158669.1:1:119076:1	85583	86520	R	<no descrition>
ENSCJAG00000037634	NOVEL	pseudogene	ENSCJAG00000037634	scaffold:C_jacchus3.2.1:ACFV01158669.1:1:119076:1	75365	76331	D	<no descrition>
ENSCJAG00000032729	NOVEL	protein_coding	ENSCJAG00000032729	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1781588	1782578	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046538}  [Source:UniProtKB/TrEMBL;Acc:H9KY69]
ENSCJAG00000019857	KNOWN	protein_coding	NUDT16L1	chromosome:C_jacchus3.2.1:12:1:121768101:1	4785386	4787517	D	Protein syndesmos isoform 1 {ECO:0000313|EMBL:JAB03849.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036912}  [Source:UniProtKB/TrEMBL;Acc:F6RE16]
ENSCJAG00000019839	KNOWN_BY_PROJECTION	protein_coding	BRWD3	scaffold:C_jacchus3.2.1:GL286126.1:1:78495:1	35645	75536	R	bromodomain and WD repeat domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17342]
ENSCJAG00000013496	KNOWN_BY_PROJECTION	protein_coding	C8orf22	chromosome:C_jacchus3.2.1:16:1:96796970:1	1927173	1928670	D	chromosome 8 open reading frame 22 [Source:HGNC Symbol;Acc:HGNC:31745]
ENSCJAG00000000601	NOVEL	protein_coding	ENSCJAG00000000601	scaffold:C_jacchus3.2.1:GL286374.1:1:14770:1	1578	4362	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001033}  [Source:UniProtKB/TrEMBL;Acc:H9KVL8]
ENSCJAG00000013499	KNOWN	protein_coding	SNAI2	chromosome:C_jacchus3.2.1:16:1:96796970:1	1791883	1795626	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024825}; Zinc finger protein SNAI2 {ECO:0000313|EMBL:JAB10436.1}  [Source:UniProtKB/TrEMBL;Acc:F6U815]
ENSCJAG00000002166	NOVEL	pseudogene	ENSCJAG00000002166	scaffold:C_jacchus3.2.1:ACFV01184653.1:1:10574:1	9497	10560	D	<no descrition>
ENSCJAG00000013505	KNOWN	protein_coding	EFCAB1	chromosome:C_jacchus3.2.1:16:1:96796970:1	1592755	1604187	R	EF-hand calcium-binding domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB14244.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024841}  [Source:UniProtKB/TrEMBL;Acc:F6TWL3]
ENSCJAG00000013519	NOVEL	pseudogene	ENSCJAG00000013519	chromosome:C_jacchus3.2.1:16:1:96796970:1	969580	970178	R	<no descrition>
ENSCJAG00000019697	NOVEL	pseudogene	ENSCJAG00000019697	chromosome:C_jacchus3.2.1:16:1:96796970:1	934549	934651	R	<no descrition>
ENSCJAG00000037356	NOVEL	protein_coding	ENSCJAG00000037356	chromosome:C_jacchus3.2.1:16:1:96796970:1	923554	924372	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052401}  [Source:UniProtKB/TrEMBL;Acc:F7IBY4]
ENSCJAG00000003098	NOVEL	protein_coding	ENSCJAG00000003098	scaffold:C_jacchus3.2.1:GL286225.1:1:118500:1	79857	81590	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005612}  [Source:UniProtKB/TrEMBL;Acc:H9KVZ5]
ENSCJAG00000019844	KNOWN_BY_PROJECTION	protein_coding	MGRN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	4716135	4780146	D	mahogunin ring finger 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:20254]
ENSCJAG00000019838	KNOWN_BY_PROJECTION	protein_coding	C16orf96	chromosome:C_jacchus3.2.1:12:1:121768101:1	4652934	4657577	D	chromosome 16 open reading frame 96 [Source:HGNC Symbol;Acc:HGNC:40031]
ENSCJAG00000002199	NOVEL	pseudogene	ENSCJAG00000002199	scaffold:C_jacchus3.2.1:ACFV01191212.1:1:5695:1	2357	4489	D	<no descrition>
ENSCJAG00000034285	NOVEL	pseudogene	ENSCJAG00000034285	chromosome:C_jacchus3.2.1:18:1:47448759:1	38697243	38698183	D	<no descrition>
ENSCJAG00000032363	KNOWN_BY_PROJECTION	protein_coding	CEACAM20	scaffold:C_jacchus3.2.1:ACFV01191621.1:1:4612:1	901	2243	R	carcinoembryonic antigen-related cell adhesion molecule 20 [Source:HGNC Symbol;Acc:HGNC:24879]
ENSCJAG00000034812	NOVEL	protein_coding	ENSCJAG00000034812	scaffold:C_jacchus3.2.1:ACFV01195401.1:1:3253:1	961	1408	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043419}  [Source:UniProtKB/TrEMBL;Acc:H9KY12]
ENSCJAG00000032765	NOVEL	protein_coding	ENSCJAG00000032765	scaffold:C_jacchus3.2.1:ACFV01196532.1:1:2348:1	73	822	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001515}  [Source:UniProtKB/TrEMBL;Acc:H9KVN2]
ENSCJAG00000035128	NOVEL	pseudogene	ENSCJAG00000035128	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	13807	14093	R	<no descrition>
ENSCJAG00000034918	NOVEL	protein_coding	ENSCJAG00000034918	scaffold:C_jacchus3.2.1:GL286385.1:1:9282:1	1043	2793	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046690}  [Source:UniProtKB/TrEMBL;Acc:H9KY74]
ENSCJAG00000013678	KNOWN_BY_PROJECTION	protein_coding	CEBPD	chromosome:C_jacchus3.2.1:16:1:96796970:1	634316	635743	R	CCAAT/enhancer binding protein (C/EBP), delta [Source:HGNC Symbol;Acc:HGNC:1835]
ENSCJAG00000016378	KNOWN_BY_PROJECTION	protein_coding	MED15	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	390143	403338	D	mediator complex subunit 15 [Source:HGNC Symbol;Acc:HGNC:14248]
ENSCJAG00000018084	NOVEL	protein_coding	ENSCJAG00000018084	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	23334	27069	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033415}  [Source:UniProtKB/TrEMBL;Acc:H9KXC6]
ENSCJAG00000017016	KNOWN	protein_coding	MPZL1	chromosome:C_jacchus3.2.1:18:1:47448759:1	38491724	38547880	R	Myelin protein zero-like protein 1 isoform b {ECO:0000313|EMBL:JAB18537.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031305}  [Source:UniProtKB/TrEMBL;Acc:F7I0Z9]
ENSCJAG00000032272	NOVEL	protein_coding	ENSCJAG00000032272	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	37373	37872	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047270}  [Source:UniProtKB/TrEMBL;Acc:H9KY86]
ENSCJAG00000002061	NOVEL	protein_coding	ENSCJAG00000002061	scaffold:C_jacchus3.2.1:ACFV01183255.1:1:9108:1	252	1010	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003727}  [Source:UniProtKB/TrEMBL;Acc:H9KVR0]
ENSCJAG00000016985	KNOWN	protein_coding	MPC2	chromosome:C_jacchus3.2.1:18:1:47448759:1	38347745	38368599	D	Mitochondrial pyruvate carrier 2 {ECO:0000313|EMBL:JAB07076.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031253}  [Source:UniProtKB/TrEMBL;Acc:F7ICP2]
ENSCJAG00000010932	NOVEL	protein_coding	ENSCJAG00000010932	scaffold:C_jacchus3.2.1:GL290706.1:1:6429:1	1720	2342	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020154}  [Source:UniProtKB/TrEMBL;Acc:H9KWR4]
ENSCJAG00000016904	KNOWN	protein_coding	DCAF6	chromosome:C_jacchus3.2.1:18:1:47448759:1	38206945	38348115	R	DDB1-and CUL4-associated factor 6 isoform a {ECO:0000313|EMBL:JAB32191.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031221}  [Source:UniProtKB/TrEMBL;Acc:F7IF42]
ENSCJAG00000002378	KNOWN	protein_coding	SREBF2	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	483544	501485	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004363}  [Source:UniProtKB/TrEMBL;Acc:H9KVT5]
ENSCJAG00000033067	NOVEL	protein_coding	ENSCJAG00000033067	scaffold:C_jacchus3.2.1:GL285458.1:1:10869:1	9011	9526	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021765}  [Source:UniProtKB/TrEMBL;Acc:H9KWV1]
ENSCJAG00000034027	NOVEL	protein_coding	ENSCJAG00000034027	scaffold:C_jacchus3.2.1:ACFV01185843.1:1:6642:1	1013	6512	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044772}  [Source:UniProtKB/TrEMBL;Acc:H9KY31]
ENSCJAG00000007839	NOVEL	pseudogene	ENSCJAG00000007839	scaffold:C_jacchus3.2.1:GL284710.1:1:67226:1	18739	19532	R	<no descrition>
ENSCJAG00000002580	KNOWN	protein_coding	CSDC2	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	783408	787515	R	Cold shock domain-containing protein C2 {ECO:0000313|EMBL:JAB06542.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004690}  [Source:UniProtKB/TrEMBL;Acc:H9KVU7]
ENSCJAG00000000004	KNOWN_BY_PROJECTION	protein_coding	MAGEB5	scaffold:C_jacchus3.2.1:GL286072.1:1:22486:1	7060	12863	D	melanoma antigen family B, 5 [Source:HGNC Symbol;Acc:HGNC:23795]
ENSCJAG00000018497	KNOWN_BY_PROJECTION	protein_coding	IGKV1D-42	scaffold:C_jacchus3.2.1:GL285643.1:1:14956:1	7201	7865	D	immunoglobulin kappa variable 1D-42 (non-functional) [Source:HGNC Symbol;Acc:HGNC:5757]
ENSCJAG00000016276	NOVEL	protein_coding	ENSCJAG00000016276	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	4414	11884	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045838}  [Source:UniProtKB/TrEMBL;Acc:H9KY57]
ENSCJAG00000016862	KNOWN_BY_PROJECTION	protein_coding	TIPRL	chromosome:C_jacchus3.2.1:18:1:47448759:1	38093471	38117702	R	TOR signaling pathway regulator [Source:HGNC Symbol;Acc:HGNC:30231]
ENSCJAG00000032246	NOVEL	protein_coding	ENSCJAG00000032246	scaffold:C_jacchus3.2.1:ACFV01191316.1:1:6612:1	1285	1735	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043902}  [Source:UniProtKB/TrEMBL;Acc:H9KY18]
ENSCJAG00000006057	KNOWN_BY_PROJECTION	protein_coding	TLR3	chromosome:C_jacchus3.2.1:3:1:190850796:1	3352499	3369806	R	toll-like receptor 3 [Source:HGNC Symbol;Acc:HGNC:11849]
ENSCJAG00000016838	KNOWN	protein_coding	SFT2D2	chromosome:C_jacchus3.2.1:18:1:47448759:1	38070866	38087889	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031027}; Vesicle transport protein SFT2B {ECO:0000313|EMBL:JAB02665.1}  [Source:UniProtKB/TrEMBL;Acc:F7I138]
ENSCJAG00000005720	KNOWN_BY_PROJECTION	protein_coding	MAU2	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	97470	110562	D	MAU2 sister chromatid cohesion factor [Source:HGNC Symbol;Acc:HGNC:29140]
ENSCJAG00000031516	NOVEL	protein_coding	ENSCJAG00000031516	chromosome:C_jacchus3.2.1:3:1:190850796:1	3298677	3300587	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049879}  [Source:UniProtKB/TrEMBL;Acc:F6YD41]
ENSCJAG00000034917	NOVEL	protein_coding	ENSCJAG00000034917	chromosome:C_jacchus3.2.1:18:1:47448759:1	38055961	38057033	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052283}  [Source:UniProtKB/TrEMBL;Acc:F7IGT8]
ENSCJAG00000022645	NOVEL	protein_coding	ENSCJAG00000022645	scaffold:C_jacchus3.2.1:ACFV01179142.1:1:20583:1	4807	6707	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041244}  [Source:UniProtKB/TrEMBL;Acc:H9KXT3]
ENSCJAG00000004731	NOVEL	protein_coding	ENSCJAG00000004731	scaffold:C_jacchus3.2.1:GL285425.1:1:25305:1	4583	5597	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008589}  [Source:UniProtKB/TrEMBL;Acc:H9KW47]
ENSCJAG00000010361	NOVEL	protein_coding	ENSCJAG00000010361	chromosome:C_jacchus3.2.1:18:1:47448759:1	37794779	37800100	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019083}  [Source:UniProtKB/TrEMBL;Acc:F6SVP8]
ENSCJAG00000010354	KNOWN	protein_coding	DPT	chromosome:C_jacchus3.2.1:18:1:47448759:1	37665198	37695051	D	Dermatopontin {ECO:0000313|EMBL:JAB03588.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019074}  [Source:UniProtKB/TrEMBL;Acc:F6T5W1]
ENSCJAG00000005117	NOVEL	pseudogene	ENSCJAG00000005117	scaffold:C_jacchus3.2.1:ACFV01174550.1:1:49126:1	34639	35837	R	<no descrition>
ENSCJAG00000017335	KNOWN_BY_PROJECTION	protein_coding	BZRAP1	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	565956	574865	R	benzodiazepine receptor (peripheral) associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16831]
ENSCJAG00000019665	NOVEL	pseudogene	ENSCJAG00000019665	chromosome:C_jacchus3.2.1:18:1:47448759:1	37457504	37457970	R	<no descrition>
ENSCJAG00000005877	NOVEL	protein_coding	ENSCJAG00000005877	scaffold:C_jacchus3.2.1:ACFV01189329.1:1:2446:1	21	619	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010780}  [Source:UniProtKB/TrEMBL;Acc:H9KWA9]
ENSCJAG00000033381	NOVEL	protein_coding	ENSCJAG00000033381	scaffold:C_jacchus3.2.1:GL285356.1:1:4748:1	3955	4493	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044816}  [Source:UniProtKB/TrEMBL;Acc:H9KY34]
ENSCJAG00000034155	NOVEL	protein_coding	ENSCJAG00000034155	scaffold:C_jacchus3.2.1:GL286032.1:1:71033:1	2960	4624	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021187}  [Source:UniProtKB/TrEMBL;Acc:H9KWU4]
ENSCJAG00000033948	NOVEL	protein_coding	ENSCJAG00000033948	chromosome:C_jacchus3.2.1:18:1:47448759:1	37233685	37234252	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051821}  [Source:UniProtKB/TrEMBL;Acc:F6XT38]
ENSCJAG00000005633	KNOWN	protein_coding	GMIP	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	404388	409658	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010308}  [Source:UniProtKB/TrEMBL;Acc:H9KW89]
ENSCJAG00000023051	NOVEL	processed_pseudogene	ENSCJAG00000023051	chromosome:C_jacchus3.2.1:5:1:159171411:1	75436482	75436961	D	<no descrition>
ENSCJAG00000023151	NOVEL	processed_pseudogene	ENSCJAG00000023151	chromosome:C_jacchus3.2.1:5:1:159171411:1	73734746	73735294	R	<no descrition>
ENSCJAG00000023402	NOVEL	processed_pseudogene	ENSCJAG00000023402	chromosome:C_jacchus3.2.1:5:1:159171411:1	63940833	63941863	D	<no descrition>
ENSCJAG00000022378	NOVEL	processed_pseudogene	ENSCJAG00000022378	chromosome:C_jacchus3.2.1:5:1:159171411:1	57723204	57723473	R	<no descrition>
ENSCJAG00000032891	NOVEL	processed_pseudogene	ENSCJAG00000032891	chromosome:C_jacchus3.2.1:5:1:159171411:1	41407586	41408065	D	<no descrition>
ENSCJAG00000022521	NOVEL	processed_pseudogene	ENSCJAG00000022521	chromosome:C_jacchus3.2.1:5:1:159171411:1	38368360	38368924	D	<no descrition>
ENSCJAG00000031997	NOVEL	protein_coding	ENSCJAG00000031997	chromosome:C_jacchus3.2.1:5:1:159171411:1	110743715	110744041	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018863}  [Source:UniProtKB/TrEMBL;Acc:F7HG46]
ENSCJAG00000000261	KNOWN_BY_PROJECTION	protein_coding	UBE2Q2	scaffold:C_jacchus3.2.1:GL285213.1:1:25509:1	1594	6913	D	ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
ENSCJAG00000018768	KNOWN	protein_coding	KCNJ12	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	798237	803011	R	ATP-sensitive inward rectifier potassium channel 12 {ECO:0000313|EMBL:JAB30492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034853}  [Source:UniProtKB/TrEMBL;Acc:H9KXF8]
ENSCJAG00000022825	NOVEL	protein_coding	ENSCJAG00000022825	chromosome:C_jacchus3.2.1:5:1:159171411:1	102821720	102822097	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041406}  [Source:UniProtKB/TrEMBL;Acc:F7DF97]
ENSCJAG00000000338	NOVEL	pseudogene	ENSCJAG00000000338	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	31701	33122	D	<no descrition>
ENSCJAG00000017368	NOVEL	protein_coding	ENSCJAG00000017368	scaffold:C_jacchus3.2.1:ACFV01179438.1:1:21976:1	17467	18245	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048402}  [Source:UniProtKB/TrEMBL;Acc:H9KYC0]
ENSCJAG00000037887	KNOWN_BY_PROJECTION	protein_coding	C17orf67	chromosome:C_jacchus3.2.1:5:1:159171411:1	100615620	100615736	D	chromosome 17 open reading frame 67 [Source:HGNC Symbol;Acc:HGNC:27900]
ENSCJAG00000019815	KNOWN	protein_coding	DNAJA3	chromosome:C_jacchus3.2.1:12:1:121768101:1	4485135	4516917	D	DnaJ homolog subfamily A member 3, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB03872.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036858}  [Source:UniProtKB/TrEMBL;Acc:F6T912]
ENSCJAG00000022062	KNOWN_BY_PROJECTION	protein_coding	CCDC182	chromosome:C_jacchus3.2.1:5:1:159171411:1	99645882	99646343	D	coiled-coil domain containing 182 [Source:HGNC Symbol;Acc:HGNC:49392]
ENSCJAG00000022816	KNOWN	protein_coding	MIS12	chromosome:C_jacchus3.2.1:5:1:159171411:1	97629063	97629714	D	Protein MIS12 homolog {ECO:0000313|EMBL:JAB02498.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041397}  [Source:UniProtKB/TrEMBL;Acc:F7EAN9]
ENSCJAG00000019813	NOVEL	protein_coding	ENSCJAG00000019813	chromosome:C_jacchus3.2.1:12:1:121768101:1	4471780	4472568	D	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F6TKI2]
ENSCJAG00000032918	NOVEL	protein_coding	ENSCJAG00000032918	chromosome:C_jacchus3.2.1:5:1:159171411:1	83130987	83132111	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045385}  [Source:UniProtKB/TrEMBL;Acc:F6SJ34]
ENSCJAG00000022281	NOVEL	protein_coding	ENSCJAG00000022281	chromosome:C_jacchus3.2.1:5:1:159171411:1	83509360	83509599	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042140}  [Source:UniProtKB/TrEMBL;Acc:F6V8U9]
ENSCJAG00000023386	KNOWN	protein_coding	PIGW	chromosome:C_jacchus3.2.1:5:1:159171411:1	86993949	86995594	D	Phosphatidylinositol-glycan biosynthesis class W protein {ECO:0000256|RuleBase:RU280819}  [Source:UniProtKB/TrEMBL;Acc:F7HF67]
ENSCJAG00000000323	KNOWN_BY_PROJECTION	protein_coding	PSMD3	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	27896	35592	D	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 [Source:HGNC Symbol;Acc:HGNC:9560]
ENSCJAG00000023108	NOVEL	protein_coding	ENSCJAG00000023108	chromosome:C_jacchus3.2.1:5:1:159171411:1	73657729	73658484	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041636}  [Source:UniProtKB/TrEMBL;Acc:F7DDW4]
ENSCJAG00000023106	KNOWN_BY_PROJECTION	protein_coding	RNF222	chromosome:C_jacchus3.2.1:5:1:159171411:1	73464038	73464700	D	ring finger protein 222 [Source:HGNC Symbol;Acc:HGNC:34517]
ENSCJAG00000022488	NOVEL	protein_coding	ENSCJAG00000022488	chromosome:C_jacchus3.2.1:5:1:159171411:1	48364638	48365033	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041101}  [Source:UniProtKB/TrEMBL;Acc:F7DXN6]
ENSCJAG00000023187	NOVEL	protein_coding	ENSCJAG00000023187	chromosome:C_jacchus3.2.1:5:1:159171411:1	47417871	47419253	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041709}  [Source:UniProtKB/TrEMBL;Acc:F7GUM0]
ENSCJAG00000034873	NOVEL	protein_coding	ENSCJAG00000034873	scaffold:C_jacchus3.2.1:ACFV01184156.1:1:7841:1	2113	6230	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045005}  [Source:UniProtKB/TrEMBL;Acc:H9KY37]
ENSCJAG00000000609	KNOWN_BY_PROJECTION	protein_coding	TSHZ2	chromosome:C_jacchus3.2.1:5:1:159171411:1	47192210	47195284	D	teashirt zinc finger homeobox 2 [Source:HGNC Symbol;Acc:HGNC:13010]
ENSCJAG00000013388	KNOWN	protein_coding	IRAK4	chromosome:C_jacchus3.2.1:9:1:124281992:1	27520948	27550507	R	Interleukin-1 receptor-associated kinase 4 isoform a {ECO:0000313|EMBL:JAB10979.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049828}  [Source:UniProtKB/TrEMBL;Acc:F6ZUT2]
ENSCJAG00000023186	KNOWN	protein_coding	MOCS3	chromosome:C_jacchus3.2.1:5:1:159171411:1	44881413	44882878	D	Adenylyltransferase and sulfurtransferase MOCS3 {ECO:0000256|HAMAP-Rule:MF_03049}  [Source:UniProtKB/TrEMBL;Acc:F7GUM3]
ENSCJAG00000022519	NOVEL	protein_coding	ENSCJAG00000022519	chromosome:C_jacchus3.2.1:5:1:159171411:1	39816541	39816696	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041126}  [Source:UniProtKB/TrEMBL;Acc:F7DXE2]
ENSCJAG00000035063	NOVEL	protein_coding	ENSCJAG00000035063	scaffold:C_jacchus3.2.1:GL286142.1:1:16313:1	1354	5579	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043173}  [Source:UniProtKB/TrEMBL;Acc:H9KY07]
ENSCJAG00000022520	NOVEL	protein_coding	ENSCJAG00000022520	chromosome:C_jacchus3.2.1:5:1:159171411:1	39661478	39662119	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040750}  [Source:UniProtKB/TrEMBL;Acc:F7IT97]
ENSCJAG00000033456	NOVEL	processed_pseudogene	ENSCJAG00000033456	chromosome:C_jacchus3.2.1:10:1:132174527:1	35087389	35087787	R	<no descrition>
ENSCJAG00000022500	NOVEL	processed_pseudogene	ENSCJAG00000022500	chromosome:C_jacchus3.2.1:10:1:132174527:1	33180486	33180965	D	<no descrition>
ENSCJAG00000022468	NOVEL	processed_pseudogene	ENSCJAG00000022468	chromosome:C_jacchus3.2.1:10:1:132174527:1	18228503	18228895	R	<no descrition>
ENSCJAG00000022593	NOVEL	processed_pseudogene	ENSCJAG00000022593	chromosome:C_jacchus3.2.1:10:1:132174527:1	15735795	15736724	R	<no descrition>
ENSCJAG00000022503	NOVEL	processed_pseudogene	ENSCJAG00000022503	chromosome:C_jacchus3.2.1:4:1:171630274:1	131426720	131427277	D	<no descrition>
ENSCJAG00000023227	NOVEL	protein_coding	ENSCJAG00000023227	chromosome:C_jacchus3.2.1:10:1:132174527:1	45636315	45636680	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041741}  [Source:UniProtKB/TrEMBL;Acc:F7G5S8]
ENSCJAG00000022492	NOVEL	processed_pseudogene	ENSCJAG00000022492	chromosome:C_jacchus3.2.1:4:1:171630274:1	128910232	128910714	D	<no descrition>
ENSCJAG00000023229	NOVEL	protein_coding	RNASE12	chromosome:C_jacchus3.2.1:10:1:132174527:1	44933876	44934612	R	Ribonuclease A I1 {ECO:0000313|EMBL:CDG31994.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041743}  [Source:UniProtKB/TrEMBL;Acc:F7G5R4]
ENSCJAG00000023230	KNOWN_BY_PROJECTION	protein_coding	OR11H4	chromosome:C_jacchus3.2.1:10:1:132174527:1	44632576	44633621	D	olfactory receptor, family 11, subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:15347]
ENSCJAG00000037908	KNOWN_BY_PROJECTION	protein_coding	OR11H7	chromosome:C_jacchus3.2.1:10:1:132174527:1	44612464	44613447	D	olfactory receptor, family 11, subfamily H, member 7 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:15350]
ENSCJAG00000023233	NOVEL	protein_coding	ENSCJAG00000023233	chromosome:C_jacchus3.2.1:10:1:132174527:1	44428718	44429650	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7G5N5]
ENSCJAG00000035036	NOVEL	protein_coding	ENSCJAG00000035036	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	59450	63485	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044527}  [Source:UniProtKB/TrEMBL;Acc:H9KY27]
ENSCJAG00000023234	NOVEL	protein_coding	ENSCJAG00000023234	chromosome:C_jacchus3.2.1:10:1:132174527:1	44416398	44417513	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7G5M6]
ENSCJAG00000010026	KNOWN_BY_PROJECTION	protein_coding	OR4N2	chromosome:C_jacchus3.2.1:10:1:132174527:1	44391723	44392646	R	olfactory receptor, family 4, subfamily N, member 2 [Source:HGNC Symbol;Acc:HGNC:14742]
ENSCJAG00000010034	KNOWN_BY_PROJECTION	protein_coding	OR4K2	chromosome:C_jacchus3.2.1:10:1:132174527:1	44331056	44331997	R	olfactory receptor, family 4, subfamily K, member 2 [Source:HGNC Symbol;Acc:HGNC:14728]
ENSCJAG00000033335	NOVEL	protein_coding	ENSCJAG00000033335	scaffold:C_jacchus3.2.1:GL286351.1:1:18728:1	89	1830	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046173}  [Source:UniProtKB/TrEMBL;Acc:H9KY61]
ENSCJAG00000023235	KNOWN_BY_PROJECTION	protein_coding	OR4K5	chromosome:C_jacchus3.2.1:10:1:132174527:1	44252251	44253327	R	olfactory receptor, family 4, subfamily K, member 5 [Source:HGNC Symbol;Acc:HGNC:14745]
ENSCJAG00000005052	KNOWN_BY_PROJECTION	protein_coding	LRRC37B	scaffold:C_jacchus3.2.1:ACFV01183061.1:1:10801:1	1806	4653	R	leucine rich repeat containing 37B [Source:HGNC Symbol;Acc:HGNC:29070]
ENSCJAG00000010040	KNOWN_BY_PROJECTION	protein_coding	OR4K1	chromosome:C_jacchus3.2.1:10:1:132174527:1	44160443	44161495	D	olfactory receptor, family 4, subfamily K, member 1 [Source:HGNC Symbol;Acc:HGNC:14726]
ENSCJAG00000032106	NOVEL	protein_coding	ENSCJAG00000032106	scaffold:C_jacchus3.2.1:GL285278.1:1:27867:1	4942	12078	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028628}  [Source:UniProtKB/TrEMBL;Acc:H9KX50]
ENSCJAG00000023285	NOVEL	protein_coding	ENSCJAG00000023285	chromosome:C_jacchus3.2.1:10:1:132174527:1	43850974	43852020	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7FDY3]
ENSCJAG00000010191	NOVEL	protein_coding	ENSCJAG00000010191	scaffold:C_jacchus3.2.1:GL284825.1:1:20775:1	14083	17591	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018760}  [Source:UniProtKB/TrEMBL;Acc:H9KWN2]
ENSCJAG00000023280	NOVEL	protein_coding	ENSCJAG00000023280	chromosome:C_jacchus3.2.1:10:1:132174527:1	39248867	39249277	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041792}  [Source:UniProtKB/TrEMBL;Acc:F7FE04]
ENSCJAG00000017380	NOVEL	protein_coding	ENSCJAG00000017380	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	724980	731686	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032042}  [Source:UniProtKB/TrEMBL;Acc:H9KXA7]
ENSCJAG00000023278	NOVEL	protein_coding	ENSCJAG00000023278	chromosome:C_jacchus3.2.1:10:1:132174527:1	35515855	35516301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041152}  [Source:UniProtKB/TrEMBL;Acc:F7DX34]
ENSCJAG00000013346	KNOWN	protein_coding	TWF1	chromosome:C_jacchus3.2.1:9:1:124281992:1	27503028	27514361	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024570}  [Source:UniProtKB/TrEMBL;Acc:F7G0P6]
ENSCJAG00000023276	KNOWN	protein_coding	C15ORF62	chromosome:C_jacchus3.2.1:10:1:132174527:1	35125576	35126650	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041788}; Uncharacterized protein C15orf62, mitochondrial {ECO:0000313|EMBL:JAB31960.1}  [Source:UniProtKB/TrEMBL;Acc:F7FE92]
ENSCJAG00000023277	KNOWN	protein_coding	CHST14	chromosome:C_jacchus3.2.1:10:1:132174527:1	35491291	35493430	R	Carbohydrate sulfotransferase 14 {ECO:0000313|EMBL:JAB07065.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041789}  [Source:UniProtKB/TrEMBL;Acc:F7FE82]
ENSCJAG00000020769	NOVEL	protein_coding	ENSCJAG00000020769	chromosome:C_jacchus3.2.1:10:1:132174527:1	34730382	34730609	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049864}  [Source:UniProtKB/TrEMBL;Acc:F6YUR0]
ENSCJAG00000016652	KNOWN_BY_PROJECTION	protein_coding	HSF5	scaffold:C_jacchus3.2.1:GL286345.1:1:21803:1	19509	21236	R	heat shock transcription factor family member 5 [Source:HGNC Symbol;Acc:HGNC:26862]
ENSCJAG00000032187	NOVEL	protein_coding	ENSCJAG00000032187	chromosome:C_jacchus3.2.1:10:1:132174527:1	33675237	33675488	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048114}  [Source:UniProtKB/TrEMBL;Acc:F7HJD6]
ENSCJAG00000022467	NOVEL	protein_coding	ENSCJAG00000022467	chromosome:C_jacchus3.2.1:10:1:132174527:1	32682934	32683454	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041080}  [Source:UniProtKB/TrEMBL;Acc:F7FGD8]
ENSCJAG00000002155	NOVEL	protein_coding	ENSCJAG00000002155	scaffold:C_jacchus3.2.1:ACFV01182853.1:1:10872:1	1155	9348	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003870}  [Source:UniProtKB/TrEMBL;Acc:H9KVR6]
ENSCJAG00000001703	KNOWN	protein_coding	EID1	chromosome:C_jacchus3.2.1:10:1:132174527:1	26092043	26092808	D	EP300-interacting inhibitor of differentiation 1 {ECO:0000313|EMBL:JAB07878.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003043}  [Source:UniProtKB/TrEMBL;Acc:F7GI85]
ENSCJAG00000022186	NOVEL	protein_coding	ENSCJAG00000022186	chromosome:C_jacchus3.2.1:10:1:132174527:1	24132562	24132816	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040842}  [Source:UniProtKB/TrEMBL;Acc:F7IDW3]
ENSCJAG00000004848	NOVEL	protein_coding	ENSCJAG00000004848	chromosome:C_jacchus3.2.1:10:1:132174527:1	17944047	17945384	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052356}  [Source:UniProtKB/TrEMBL;Acc:F7IR32]
ENSCJAG00000022256	NOVEL	protein_coding	ENSCJAG00000022256	chromosome:C_jacchus3.2.1:10:1:132174527:1	18250147	18250335	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040903}  [Source:UniProtKB/TrEMBL;Acc:F7I256]
ENSCJAG00000022187	NOVEL	protein_coding	ENSCJAG00000022187	chromosome:C_jacchus3.2.1:10:1:132174527:1	22301440	22302520	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040843}  [Source:UniProtKB/TrEMBL;Acc:F7IDW1]
ENSCJAG00000005026	NOVEL	pseudogene	ENSCJAG00000005026	scaffold:C_jacchus3.2.1:GL284785.1:1:66249:1	26761	27277	R	<no descrition>
ENSCJAG00000023428	KNOWN_BY_PROJECTION	protein_coding	KBTBD13	chromosome:C_jacchus3.2.1:10:1:132174527:1	7442589	7443965	D	kelch repeat and BTB (POZ) domain containing 13 [Source:HGNC Symbol;Acc:HGNC:37227]
ENSCJAG00000023332	NOVEL	protein_coding	ENSCJAG00000023332	chromosome:C_jacchus3.2.1:10:1:132174527:1	6219582	6220075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041838}  [Source:UniProtKB/TrEMBL;Acc:F7DU09]
ENSCJAG00000004269	KNOWN_BY_PROJECTION	protein_coding	C2CD4A	chromosome:C_jacchus3.2.1:10:1:132174527:1	4462584	4463663	D	C2 calcium-dependent domain containing 4A [Source:HGNC Symbol;Acc:HGNC:33627]
ENSCJAG00000033246	NOVEL	protein_coding	ENSCJAG00000033246	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	153947	157568	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034726}  [Source:UniProtKB/TrEMBL;Acc:H9KXE8]
ENSCJAG00000020032	NOVEL	protein_coding	ENSCJAG00000020032	scaffold:C_jacchus3.2.1:GL286310.1:1:28081:1	2807	4736	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009615}  [Source:UniProtKB/TrEMBL;Acc:H9KW61]
ENSCJAG00000020276	KNOWN_BY_PROJECTION	protein_coding	KLKB1	chromosome:C_jacchus3.2.1:3:1:190850796:1	3214417	3239569	R	kallikrein B, plasma (Fletcher factor) 1 [Source:HGNC Symbol;Acc:HGNC:6371]
ENSCJAG00000002344	KNOWN	protein_coding	WBP2NL	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	334454	342056	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004220}  [Source:UniProtKB/TrEMBL;Acc:H9KVS8]
ENSCJAG00000031673	KNOWN	protein_coding	TAAR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	133029039	133030049	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005276}  [Source:UniProtKB/TrEMBL;Acc:F7HW37]
ENSCJAG00000022494	NOVEL	protein_coding	ENSCJAG00000022494	chromosome:C_jacchus3.2.1:4:1:171630274:1	127130224	127131217	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041107}  [Source:UniProtKB/TrEMBL;Acc:F7DXK9]
ENSCJAG00000022493	NOVEL	protein_coding	ENSCJAG00000022493	chromosome:C_jacchus3.2.1:4:1:171630274:1	127621229	127621716	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041106}  [Source:UniProtKB/TrEMBL;Acc:F7DXL4]
ENSCJAG00000022495	NOVEL	protein_coding	ENSCJAG00000022495	chromosome:C_jacchus3.2.1:4:1:171630274:1	123107656	123108267	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041108}  [Source:UniProtKB/TrEMBL;Acc:F7DXK4]
ENSCJAG00000003068	NOVEL	pseudogene	ENSCJAG00000003068	scaffold:C_jacchus3.2.1:GL285608.1:1:125556:1	1881	3372	R	<no descrition>
ENSCJAG00000022496	KNOWN_BY_PROJECTION	protein_coding	HSPE1	chromosome:C_jacchus3.2.1:4:1:171630274:1	122433470	122433999	D	heat shock 10kDa protein 1 [Source:HGNC Symbol;Acc:HGNC:5269]
ENSCJAG00000033789	NOVEL	protein_coding	ENSCJAG00000033789	scaffold:C_jacchus3.2.1:ACFV01193705.1:1:2128:1	377	1491	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042269}  [Source:UniProtKB/TrEMBL;Acc:H9KXY8]
ENSCJAG00000014485	NOVEL	protein_coding	ENSCJAG00000014485	scaffold:C_jacchus3.2.1:GL286440.1:1:8534:1	42	806	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026628}  [Source:UniProtKB/TrEMBL;Acc:H9KX29]
ENSCJAG00000017191	NOVEL	protein_coding	ENSCJAG00000017191	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	183126	185548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031631}  [Source:UniProtKB/TrEMBL;Acc:H9KX91]
ENSCJAG00000021712	NOVEL	processed_pseudogene	ENSCJAG00000021712	chromosome:C_jacchus3.2.1:2:1:204313951:1	41176521	41176769	D	<no descrition>
ENSCJAG00000022266	NOVEL	processed_pseudogene	ENSCJAG00000022266	chromosome:C_jacchus3.2.1:2:1:204313951:1	41043574	41043822	D	<no descrition>
ENSCJAG00000002543	KNOWN_BY_PROJECTION	protein_coding	OR56B1	scaffold:C_jacchus3.2.1:GL285498.1:1:21777:1	1508	3866	D	olfactory receptor, family 56, subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:15245]
ENSCJAG00000023141	NOVEL	processed_pseudogene	ENSCJAG00000023141	chromosome:C_jacchus3.2.1:2:1:204313951:1	13185198	13185731	R	<no descrition>
ENSCJAG00000022369	NOVEL	processed_pseudogene	ENSCJAG00000022369	chromosome:C_jacchus3.2.1:14:1:108792865:1	59001034	59001618	R	<no descrition>
ENSCJAG00000004223	NOVEL	processed_pseudogene	ENSCJAG00000004223	chromosome:C_jacchus3.2.1:2:1:204313951:1	1060492	1060994	D	<no descrition>
ENSCJAG00000032230	NOVEL	processed_pseudogene	ENSCJAG00000032230	chromosome:C_jacchus3.2.1:14:1:108792865:1	56313745	56314116	D	<no descrition>
ENSCJAG00000015223	NOVEL	processed_pseudogene	ENSCJAG00000015223	chromosome:C_jacchus3.2.1:2:1:204313951:1	367806	368504	R	<no descrition>
ENSCJAG00000020294	KNOWN_BY_PROJECTION	protein_coding	F11	chromosome:C_jacchus3.2.1:3:1:190850796:1	3183253	3208599	R	coagulation factor XI [Source:HGNC Symbol;Acc:HGNC:3529]
ENSCJAG00000001962	NOVEL	processed_pseudogene	ENSCJAG00000001962	chromosome:C_jacchus3.2.1:14:1:108792865:1	55224221	55224361	R	<no descrition>
ENSCJAG00000034686	NOVEL	processed_pseudogene	ENSCJAG00000034686	chromosome:C_jacchus3.2.1:14:1:108792865:1	53812241	53812729	R	<no descrition>
ENSCJAG00000022566	NOVEL	processed_pseudogene	ENSCJAG00000022566	chromosome:C_jacchus3.2.1:7:1:155834243:1	131393674	131394165	D	<no descrition>
ENSCJAG00000022651	NOVEL	processed_pseudogene	ENSCJAG00000022651	chromosome:C_jacchus3.2.1:14:1:108792865:1	48062573	48062878	D	<no descrition>
ENSCJAG00000022287	NOVEL	processed_pseudogene	ENSCJAG00000022287	chromosome:C_jacchus3.2.1:14:1:108792865:1	22627679	22628173	D	<no descrition>
ENSCJAG00000037219	NOVEL	protein_coding	ENSCJAG00000037219	chromosome:C_jacchus3.2.1:2:1:204313951:1	44756512	44757264	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052255}  [Source:UniProtKB/TrEMBL;Acc:F7IJ49]
ENSCJAG00000021711	KNOWN_BY_PROJECTION	protein_coding	GPR151	chromosome:C_jacchus3.2.1:2:1:204313951:1	43701048	43702307	R	G protein-coupled receptor 151 [Source:HGNC Symbol;Acc:HGNC:23624]
ENSCJAG00000034542	NOVEL	processed_pseudogene	ENSCJAG00000034542	chromosome:C_jacchus3.2.1:14:1:108792865:1	4493015	4493647	D	<no descrition>
ENSCJAG00000020300	KNOWN_BY_PROJECTION	protein_coding	MTNR1A	chromosome:C_jacchus3.2.1:3:1:190850796:1	3013559	3035729	D	melatonin receptor 1A [Source:HGNC Symbol;Acc:HGNC:7463]
ENSCJAG00000023117	NOVEL	protein_coding	ENSCJAG00000023117	chromosome:C_jacchus3.2.1:14:1:108792865:1	65860689	65861066	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041645}  [Source:UniProtKB/TrEMBL;Acc:F7CV65]
ENSCJAG00000023116	NOVEL	protein_coding	ENSCJAG00000023116	chromosome:C_jacchus3.2.1:14:1:108792865:1	65700448	65700702	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041644}  [Source:UniProtKB/TrEMBL;Acc:F7CV73]
ENSCJAG00000012022	NOVEL	protein_coding	ENSCJAG00000012022	scaffold:C_jacchus3.2.1:ACFV01176802.1:1:21351:1	864	2855	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022081}  [Source:UniProtKB/TrEMBL;Acc:H9KWV9]
ENSCJAG00000034211	NOVEL	protein_coding	ENSCJAG00000034211	chromosome:C_jacchus3.2.1:2:1:204313951:1	39815403	39815555	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050064}  [Source:UniProtKB/TrEMBL;Acc:F7FD26]
ENSCJAG00000023115	NOVEL	protein_coding	ENSCJAG00000023115	chromosome:C_jacchus3.2.1:14:1:108792865:1	65561498	65562298	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041643}  [Source:UniProtKB/TrEMBL;Acc:F7CV91]
ENSCJAG00000022525	KNOWN_BY_PROJECTION	protein_coding	IGIP	chromosome:C_jacchus3.2.1:2:1:204313951:1	37015131	37017994	D	IgA-inducing protein [Source:HGNC Symbol;Acc:HGNC:33847]
ENSCJAG00000023114	NOVEL	protein_coding	ENSCJAG00000023114	chromosome:C_jacchus3.2.1:14:1:108792865:1	65462928	65463386	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041642}  [Source:UniProtKB/TrEMBL;Acc:F7CV97]
ENSCJAG00000022914	KNOWN_BY_PROJECTION	protein_coding	POLR2L	chromosome:C_jacchus3.2.1:2:1:204313951:1	35708459	35708838	R	polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa [Source:HGNC Symbol;Acc:HGNC:9199]
ENSCJAG00000018588	NOVEL	protein_coding	ENSCJAG00000018588	chromosome:C_jacchus3.2.1:2:1:204313951:1	34928917	34929333	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034496}  [Source:UniProtKB/TrEMBL;Acc:F7IK94]
ENSCJAG00000013215	KNOWN_BY_PROJECTION	protein_coding	NELL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	26383492	26827436	D	NEL-like 2 (chicken) [Source:HGNC Symbol;Acc:HGNC:7751]
ENSCJAG00000023113	KNOWN	protein_coding	ENSCJAG00000023113	chromosome:C_jacchus3.2.1:14:1:108792865:1	64334693	64335853	D	C1GALT1-specific chaperone 1-like {ECO:0000313|EMBL:JAB02836.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041641}  [Source:UniProtKB/TrEMBL;Acc:F7CVA3]
ENSCJAG00000002764	KNOWN_BY_PROJECTION	protein_coding	ADSL	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1738638	1746509	D	adenylosuccinate lyase [Source:HGNC Symbol;Acc:HGNC:291]
ENSCJAG00000023099	NOVEL	protein_coding	ENSCJAG00000023099	chromosome:C_jacchus3.2.1:2:1:204313951:1	29751541	29752349	R	40S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}  [Source:UniProtKB/TrEMBL;Acc:F7DE09]
ENSCJAG00000022161	KNOWN	protein_coding	ENSCJAG00000022161	chromosome:C_jacchus3.2.1:14:1:108792865:1	60702879	60703954	D	Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}  [Source:UniProtKB/TrEMBL;Acc:F6QQJ2]
ENSCJAG00000010933	NOVEL	protein_coding	ENSCJAG00000010933	scaffold:C_jacchus3.2.1:ACFV01180105.1:1:12755:1	4410	11427	D	<no descrition>
ENSCJAG00000013213	KNOWN	protein_coding	DBX2	chromosome:C_jacchus3.2.1:9:1:124281992:1	26232077	26269284	D	Homeobox protein DBX2 {ECO:0000313|EMBL:JAB21084.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024254}  [Source:UniProtKB/TrEMBL;Acc:F7FPX6]
ENSCJAG00000003055	NOVEL	protein_coding	ENSCJAG00000003055	scaffold:C_jacchus3.2.1:ACFV01201171.1:1:2002:1	56	1108	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005533}  [Source:UniProtKB/TrEMBL;Acc:H9KVY4]
ENSCJAG00000023137	KNOWN	protein_coding	UFSP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11104262	11105827	D	Inactive Ufm1-specific protease 1 {ECO:0000313|EMBL:JAB02944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041665}  [Source:UniProtKB/TrEMBL;Acc:F7HFA5]
ENSCJAG00000023416	NOVEL	protein_coding	ENSCJAG00000023416	chromosome:C_jacchus3.2.1:14:1:108792865:1	42169703	42170824	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041909}  [Source:UniProtKB/TrEMBL;Acc:F7GZL1]
ENSCJAG00000015951	KNOWN	protein_coding	TRIM56	chromosome:C_jacchus3.2.1:2:1:204313951:1	10956337	10958604	R	E3 ubiquitin-protein ligase TRIM56 {ECO:0000313|EMBL:JAB01989.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029370}  [Source:UniProtKB/TrEMBL;Acc:F7I5G2]
ENSCJAG00000032733	NOVEL	protein_coding	ENSCJAG00000032733	chromosome:C_jacchus3.2.1:14:1:108792865:1	41240859	41241206	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043717}  [Source:UniProtKB/TrEMBL;Acc:F7HVZ8]
ENSCJAG00000009303	NOVEL	protein_coding	ENSCJAG00000009303	scaffold:C_jacchus3.2.1:ACFV01180829.1:1:16148:1	3306	4958	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017029}  [Source:UniProtKB/TrEMBL;Acc:H9KWK6]
ENSCJAG00000036495	NOVEL	pseudogene	ENSCJAG00000036495	scaffold:C_jacchus3.2.1:GL288716.1:1:13974:1	12638	12932	D	<no descrition>
ENSCJAG00000016890	NOVEL	protein_coding	ENSCJAG00000016890	scaffold:C_jacchus3.2.1:GL286257.1:1:60026:1	30717	31812	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031076}  [Source:UniProtKB/TrEMBL;Acc:H9KX85]
ENSCJAG00000021929	KNOWN	protein_coding	DNAJC30	chromosome:C_jacchus3.2.1:2:1:204313951:1	8111115	8112361	D	DnaJ homolog subfamily C member 30 {ECO:0000313|EMBL:JAB02178.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040613}  [Source:UniProtKB/TrEMBL;Acc:F7IE56]
ENSCJAG00000023415	NOVEL	protein_coding	ENSCJAG00000023415	chromosome:C_jacchus3.2.1:14:1:108792865:1	38690106	38690411	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041908}  [Source:UniProtKB/TrEMBL;Acc:F7H4G4]
ENSCJAG00000022268	NOVEL	protein_coding	ENSCJAG00000022268	chromosome:C_jacchus3.2.1:14:1:108792865:1	37464743	37465280	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049825}  [Source:UniProtKB/TrEMBL;Acc:F6ZUW6]
ENSCJAG00000009242	NOVEL	protein_coding	ENSCJAG00000009242	scaffold:C_jacchus3.2.1:GL285209.1:1:14209:1	4852	8511	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016932}  [Source:UniProtKB/TrEMBL;Acc:H9KWJ9]
ENSCJAG00000011277	NOVEL	protein_coding	ENSCJAG00000011277	scaffold:C_jacchus3.2.1:GL285362.1:1:32132:1	7456	32076	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020836}  [Source:UniProtKB/TrEMBL;Acc:H9KWT8]
ENSCJAG00000003692	NOVEL	protein_coding	ENSCJAG00000003692	scaffold:C_jacchus3.2.1:ACFV01201434.1:1:2222:1	59	1689	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006704}  [Source:UniProtKB/TrEMBL;Acc:H9KW19]
ENSCJAG00000031215	KNOWN	protein_coding	CAJA-B6	scaffold:C_jacchus3.2.1:GL286250.1:1:62586:1	39932	43244	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034981}  [Source:UniProtKB/TrEMBL;Acc:H9KXG2]
ENSCJAG00000032211	NOVEL	protein_coding	ENSCJAG00000032211	scaffold:C_jacchus3.2.1:GL284886.1:1:151441:1	68884	69807	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043771}  [Source:UniProtKB/TrEMBL;Acc:H9KY17]
ENSCJAG00000035095	NOVEL	protein_coding	ENSCJAG00000035095	scaffold:C_jacchus3.2.1:GL286379.1:1:15544:1	12617	13943	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051341}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ3]
ENSCJAG00000008140	NOVEL	protein_coding	ENSCJAG00000008140	scaffold:C_jacchus3.2.1:ACFV01184778.1:1:7531:1	6656	7529	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015012}  [Source:UniProtKB/TrEMBL;Acc:H9KWH6]
ENSCJAG00000013572	KNOWN_BY_PROJECTION	protein_coding	PRKDC	chromosome:C_jacchus3.2.1:16:1:96796970:1	587351	844770	R	protein kinase, DNA-activated, catalytic polypeptide [Source:HGNC Symbol;Acc:HGNC:9413]
ENSCJAG00000035293	NOVEL	protein_coding	ENSCJAG00000035293	scaffold:C_jacchus3.2.1:GL285019.1:1:132469:1	119120	122297	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006690}  [Source:UniProtKB/TrEMBL;Acc:H9KW17]
ENSCJAG00000020301	KNOWN_BY_PROJECTION	protein_coding	FAT1	chromosome:C_jacchus3.2.1:3:1:190850796:1	2861771	2988962	D	FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
ENSCJAG00000034583	NOVEL	protein_coding	ENSCJAG00000034583	scaffold:C_jacchus3.2.1:GL285133.1:1:14322:1	5137	6351	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044362}  [Source:UniProtKB/TrEMBL;Acc:H9KY26]
ENSCJAG00000002380	NOVEL	protein_coding	ENSCJAG00000002380	scaffold:C_jacchus3.2.1:GL285798.1:1:19339:1	6012	9181	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004309}  [Source:UniProtKB/TrEMBL;Acc:H9KVT3]
ENSCJAG00000009950	KNOWN_BY_PROJECTION	protein_coding	XAGE3	scaffold:C_jacchus3.2.1:GL285995.1:1:20509:1	8688	14535	R	X antigen family, member 3 [Source:HGNC Symbol;Acc:HGNC:14618]
ENSCJAG00000010846	NOVEL	protein_coding	ENSCJAG00000010846	chromosome:C_jacchus3.2.1:3:1:190850796:1	1613559	1615443	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020010}  [Source:UniProtKB/TrEMBL;Acc:F7E253]
ENSCJAG00000010836	NOVEL	pseudogene	ENSCJAG00000010836	chromosome:C_jacchus3.2.1:3:1:190850796:1	1611582	1612858	R	<no descrition>
ENSCJAG00000034831	NOVEL	pseudogene	ENSCJAG00000034831	scaffold:C_jacchus3.2.1:GL286479.1:1:211998:1	77629	78422	D	<no descrition>
ENSCJAG00000019488	NOVEL	protein_coding	ENSCJAG00000019488	scaffold:C_jacchus3.2.1:ACFV01187728.1:1:10068:1	1306	2797	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036181}  [Source:UniProtKB/TrEMBL;Acc:H9KXI6]
ENSCJAG00000034692	NOVEL	protein_coding	ENSCJAG00000034692	scaffold:C_jacchus3.2.1:GL286136.1:1:19178:1	4222	5135	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048580}  [Source:UniProtKB/TrEMBL;Acc:H9KYC5]
ENSCJAG00000033784	NOVEL	protein_coding	ENSCJAG00000033784	scaffold:C_jacchus3.2.1:GL284816.1:1:13764:1	1434	2390	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035058}  [Source:UniProtKB/TrEMBL;Acc:H9KXG8]
ENSCJAG00000033683	NOVEL	protein_coding	ENSCJAG00000033683	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	811474	813607	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041953}  [Source:UniProtKB/TrEMBL;Acc:H9KXY0]
ENSCJAG00000003490	KNOWN_BY_PROJECTION	protein_coding	ZNF83	scaffold:C_jacchus3.2.1:GL285920.1:1:70291:1	64007	66353	D	zinc finger protein 83 [Source:HGNC Symbol;Acc:HGNC:13158]
ENSCJAG00000007363	NOVEL	protein_coding	ENSCJAG00000007363	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	117307	117682	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013703}  [Source:UniProtKB/TrEMBL;Acc:H9KWD5]
ENSCJAG00000011383	NOVEL	protein_coding	ENSCJAG00000011383	scaffold:C_jacchus3.2.1:GL286201.1:1:13751:1	4354	5770	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049581}  [Source:UniProtKB/TrEMBL;Acc:H9KYE6]
ENSCJAG00000010831	NOVEL	pseudogene	ENSCJAG00000010831	chromosome:C_jacchus3.2.1:3:1:190850796:1	1576381	1577025	D	<no descrition>
ENSCJAG00000020714	NOVEL	protein_coding	ENSCJAG00000020714	scaffold:C_jacchus3.2.1:GL285559.1:1:78824:1	65166	66042	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038517}  [Source:UniProtKB/TrEMBL;Acc:H9KXM5]
ENSCJAG00000020499	NOVEL	protein_coding	ENSCJAG00000020499	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	121589	136727	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038095}  [Source:UniProtKB/TrEMBL;Acc:H9KXL1]
ENSCJAG00000019750	KNOWN_BY_PROJECTION	protein_coding	SRL	chromosome:C_jacchus3.2.1:12:1:121768101:1	4238883	4293365	R	sarcalumenin [Source:HGNC Symbol;Acc:HGNC:11295]
ENSCJAG00000013277	NOVEL	protein_coding	ENSCJAG00000013277	chromosome:C_jacchus3.2.1:14:1:108792865:1	33935139	33935438	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024374}  [Source:UniProtKB/TrEMBL;Acc:F7GT24]
ENSCJAG00000011763	NOVEL	protein_coding	ENSCJAG00000011763	scaffold:C_jacchus3.2.1:GL285216.1:1:38373:1	10980	15834	D	<no descrition>
ENSCJAG00000021939	NOVEL	protein_coding	ENSCJAG00000021939	chromosome:C_jacchus3.2.1:14:1:108792865:1	32081563	32081817	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040623}  [Source:UniProtKB/TrEMBL;Acc:F7IE14]
ENSCJAG00000032222	NOVEL	protein_coding	ENSCJAG00000032222	chromosome:C_jacchus3.2.1:7:1:155834243:1	147348475	147348678	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043146}  [Source:UniProtKB/TrEMBL;Acc:F7IM82]
ENSCJAG00000032481	NOVEL	protein_coding	ENSCJAG00000032481	chromosome:C_jacchus3.2.1:7:1:155834243:1	148806348	148806743	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051238}  [Source:UniProtKB/TrEMBL;Acc:F6VKZ7]
ENSCJAG00000023034	KNOWN_BY_PROJECTION	protein_coding	OR11A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	146747683	146748627	D	olfactory receptor, family 11, subfamily A, member 1 [Source:HGNC Symbol;Acc:HGNC:8176]
ENSCJAG00000013700	KNOWN_BY_PROJECTION	protein_coding	IGHM	chromosome:C_jacchus3.2.1:16:1:96796970:1	156732	158617	D	immunoglobulin heavy constant mu [Source:HGNC Symbol;Acc:HGNC:5541]
ENSCJAG00000021938	NOVEL	protein_coding	ENSCJAG00000021938	chromosome:C_jacchus3.2.1:14:1:108792865:1	30780695	30781231	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040622}  [Source:UniProtKB/TrEMBL;Acc:F7IE16]
ENSCJAG00000031788	NOVEL	protein_coding	ENSCJAG00000031788	chromosome:C_jacchus3.2.1:7:1:155834243:1	145778254	145778610	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046729}  [Source:UniProtKB/TrEMBL;Acc:F7I622]
ENSCJAG00000031515	NOVEL	protein_coding	ENSCJAG00000031515	chromosome:C_jacchus3.2.1:14:1:108792865:1	27933072	27933731	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049245}  [Source:UniProtKB/TrEMBL;Acc:F6VHD3]
ENSCJAG00000005036	NOVEL	pseudogene	ENSCJAG00000005036	scaffold:C_jacchus3.2.1:GL288620.1:1:16757:1	4131	5356	D	<no descrition>
ENSCJAG00000021935	KNOWN_BY_PROJECTION	protein_coding	LRRTM1	chromosome:C_jacchus3.2.1:14:1:108792865:1	26428107	26429183	D	leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
ENSCJAG00000021842	NOVEL	protein_coding	ENSCJAG00000021842	chromosome:C_jacchus3.2.1:7:1:155834243:1	125299343	125299994	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040543}  [Source:UniProtKB/TrEMBL;Acc:F7ITB3]
ENSCJAG00000031321	NOVEL	protein_coding	ENSCJAG00000031321	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	547197	562343	D	<no descrition>
ENSCJAG00000007654	NOVEL	protein_coding	ENSCJAG00000007654	scaffold:C_jacchus3.2.1:GL286356.1:1:17352:1	563	5559	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014175}  [Source:UniProtKB/TrEMBL;Acc:H9KWF4]
ENSCJAG00000022543	NOVEL	protein_coding	ENSCJAG00000022543	chromosome:C_jacchus3.2.1:14:1:108792865:1	16983582	16984393	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041150}  [Source:UniProtKB/TrEMBL;Acc:F7DX44]
ENSCJAG00000022035	NOVEL	protein_coding	ENSCJAG00000022035	chromosome:C_jacchus3.2.1:14:1:108792865:1	16216380	16217971	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040705}  [Source:UniProtKB/TrEMBL;Acc:F7HZW7]
ENSCJAG00000033637	NOVEL	protein_coding	ENSCJAG00000033637	scaffold:C_jacchus3.2.1:ACFV01179233.1:1:15549:1	1738	15478	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049677}  [Source:UniProtKB/TrEMBL;Acc:H9KYF2]
ENSCJAG00000010278	KNOWN	protein_coding	NME7	chromosome:C_jacchus3.2.1:18:1:47448759:1	37090199	37255253	D	Nucleoside diphosphate kinase 7 isoform a {ECO:0000313|EMBL:JAB10451.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018986}  [Source:UniProtKB/TrEMBL;Acc:F7GQ16]
ENSCJAG00000010942	NOVEL	protein_coding	ENSCJAG00000010942	scaffold:C_jacchus3.2.1:ACFV01180951.1:1:16040:1	9562	13878	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020186}  [Source:UniProtKB/TrEMBL;Acc:H9KWR7]
ENSCJAG00000023395	NOVEL	protein_coding	ENSCJAG00000023395	chromosome:C_jacchus3.2.1:14:1:108792865:1	13298861	13299277	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041891}  [Source:UniProtKB/TrEMBL;Acc:F7HF17]
ENSCJAG00000010074	NOVEL	pseudogene	ENSCJAG00000010074	scaffold:C_jacchus3.2.1:ACFV01198455.1:1:2058:1	1462	2047	R	<no descrition>
ENSCJAG00000022736	KNOWN	protein_coding	GPR45	chromosome:C_jacchus3.2.1:14:1:108792865:1	9893621	9895335	D	Putative G-protein coupled receptor 45 {ECO:0000313|EMBL:JAB26719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041329}  [Source:UniProtKB/TrEMBL;Acc:F7FUA7]
ENSCJAG00000033048	NOVEL	protein_coding	ENSCJAG00000033048	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	728560	729833	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031585}  [Source:UniProtKB/TrEMBL;Acc:H9KX88]
ENSCJAG00000022223	NOVEL	protein_coding	ENSCJAG00000022223	chromosome:C_jacchus3.2.1:14:1:108792865:1	4777746	4778881	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040875}  [Source:UniProtKB/TrEMBL;Acc:F7I988]
ENSCJAG00000022384	NOVEL	protein_coding	ENSCJAG00000022384	chromosome:C_jacchus3.2.1:14:1:108792865:1	4417514	4417765	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041013}  [Source:UniProtKB/TrEMBL;Acc:F7FH02]
ENSCJAG00000023440	NOVEL	protein_coding	ENSCJAG00000023440	chromosome:C_jacchus3.2.1:14:1:108792865:1	2520001	2520489	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041933}  [Source:UniProtKB/TrEMBL;Acc:F7GU77]
ENSCJAG00000022132	NOVEL	protein_coding	ENSCJAG00000022132	chromosome:C_jacchus3.2.1:14:1:108792865:1	1592445	1592756	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040791}  [Source:UniProtKB/TrEMBL;Acc:F7IQQ5]
ENSCJAG00000022131	NOVEL	protein_coding	ENSCJAG00000022131	chromosome:C_jacchus3.2.1:14:1:108792865:1	871382	871645	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040790}  [Source:UniProtKB/TrEMBL;Acc:F7IQQ6]
ENSCJAG00000005461	NOVEL	protein_coding	ENSCJAG00000005461	scaffold:C_jacchus3.2.1:ACFV01183278.1:1:12175:1	7378	12173	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009971}  [Source:UniProtKB/TrEMBL;Acc:H9KW77]
ENSCJAG00000020503	NOVEL	protein_coding	ENSCJAG00000020503	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	25032	28313	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038099}  [Source:UniProtKB/TrEMBL;Acc:H9KXL3]
ENSCJAG00000023242	KNOWN	protein_coding	TSSK6	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	279364	281863	R	Testis-specific serine/threonine-protein kinase 6 {ECO:0000313|EMBL:JAB16791.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041756}  [Source:UniProtKB/TrEMBL;Acc:H9KXW8]
ENSCJAG00000019746	KNOWN	protein_coding	ADCY9	chromosome:C_jacchus3.2.1:12:1:121768101:1	4013342	4167233	R	Adenylate cyclase type 9 {ECO:0000313|EMBL:JAB31152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036706}  [Source:UniProtKB/TrEMBL;Acc:F6RS83]
ENSCJAG00000022168	NOVEL	processed_pseudogene	ENSCJAG00000022168	chromosome:C_jacchus3.2.1:4:1:171630274:1	104593096	104593272	R	<no descrition>
ENSCJAG00000017956	NOVEL	processed_pseudogene	ENSCJAG00000017956	chromosome:C_jacchus3.2.1:4:1:171630274:1	65510313	65511149	D	<no descrition>
ENSCJAG00000035175	NOVEL	processed_pseudogene	ENSCJAG00000035175	chromosome:C_jacchus3.2.1:4:1:171630274:1	54827168	54827566	R	<no descrition>
ENSCJAG00000015714	KNOWN_BY_PROJECTION	protein_coding	AZU1	scaffold:C_jacchus3.2.1:GL285887.1:1:5529:1	1669	2720	D	azurocidin 1 [Source:HGNC Symbol;Acc:HGNC:913]
ENSCJAG00000022404	NOVEL	processed_pseudogene	ENSCJAG00000022404	chromosome:C_jacchus3.2.1:4:1:171630274:1	53928973	53929860	R	<no descrition>
ENSCJAG00000033446	NOVEL	processed_pseudogene	ENSCJAG00000033446	chromosome:C_jacchus3.2.1:4:1:171630274:1	45551631	45551963	D	<no descrition>
ENSCJAG00000034803	KNOWN	protein_coding	TSPYL4	chromosome:C_jacchus3.2.1:4:1:171630274:1	116131420	116133027	R	Testis-specific Y-encoded-like protein 4 {ECO:0000313|EMBL:JAB37690.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008238}  [Source:UniProtKB/TrEMBL;Acc:F7IFJ9]
ENSCJAG00000022855	NOVEL	protein_coding	ENSCJAG00000022855	chromosome:C_jacchus3.2.1:4:1:171630274:1	110087973	110088414	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041426}  [Source:UniProtKB/TrEMBL;Acc:F7HFY3]
ENSCJAG00000003714	NOVEL	protein_coding	ENSCJAG00000003714	scaffold:C_jacchus3.2.1:GL285176.1:1:76252:1	48100	49460	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006732}  [Source:UniProtKB/TrEMBL;Acc:H9KW22]
ENSCJAG00000022857	NOVEL	protein_coding	ENSCJAG00000022857	chromosome:C_jacchus3.2.1:4:1:171630274:1	105729626	105730552	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041428}  [Source:UniProtKB/TrEMBL;Acc:F7HFX7]
ENSCJAG00000004954	NOVEL	protein_coding	ENSCJAG00000004954	scaffold:C_jacchus3.2.1:GL285482.1:1:11789:1	1527	1963	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009040}  [Source:UniProtKB/TrEMBL;Acc:H9KW53]
ENSCJAG00000011272	KNOWN	protein_coding	FRG1	chromosome:C_jacchus3.2.1:3:1:190850796:1	11046	59329	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020749}  [Source:UniProtKB/TrEMBL;Acc:F7H105]
ENSCJAG00000001550	NOVEL	protein_coding	ENSCJAG00000001550	chromosome:C_jacchus3.2.1:4:1:171630274:1	100585650	100587228	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042833}  [Source:UniProtKB/TrEMBL;Acc:F7AM46]
ENSCJAG00000008017	NOVEL	protein_coding	ENSCJAG00000008017	scaffold:C_jacchus3.2.1:GL286142.1:1:16313:1	7467	14600	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014803}  [Source:UniProtKB/TrEMBL;Acc:H9KWH1]
ENSCJAG00000022167	NOVEL	protein_coding	ENSCJAG00000022167	chromosome:C_jacchus3.2.1:4:1:171630274:1	95378303	95378503	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040823}  [Source:UniProtKB/TrEMBL;Acc:F7IGD7]
ENSCJAG00000022166	NOVEL	protein_coding	ENSCJAG00000022166	chromosome:C_jacchus3.2.1:4:1:171630274:1	95118292	95118633	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040822}  [Source:UniProtKB/TrEMBL;Acc:F7IGD9]
ENSCJAG00000035423	NOVEL	protein_coding	ENSCJAG00000035423	scaffold:C_jacchus3.2.1:ACFV01183743.1:1:8055:1	3600	4837	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048312}  [Source:UniProtKB/TrEMBL;Acc:H9KYB5]
ENSCJAG00000018229	NOVEL	pseudogene	ENSCJAG00000018229	scaffold:C_jacchus3.2.1:GL286067.1:1:17687:1	3009	3555	D	<no descrition>
ENSCJAG00000022165	NOVEL	protein_coding	ENSCJAG00000022165	chromosome:C_jacchus3.2.1:4:1:171630274:1	88613530	88614161	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040821}  [Source:UniProtKB/TrEMBL;Acc:F7IGE0]
ENSCJAG00000022164	NOVEL	protein_coding	ENSCJAG00000022164	chromosome:C_jacchus3.2.1:4:1:171630274:1	88344412	88345684	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040820}  [Source:UniProtKB/TrEMBL;Acc:F7IGE2]
ENSCJAG00000022163	NOVEL	protein_coding	ENSCJAG00000022163	chromosome:C_jacchus3.2.1:4:1:171630274:1	86086473	86086973	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040819}  [Source:UniProtKB/TrEMBL;Acc:F7IIQ0]
ENSCJAG00000011081	NOVEL	pseudogene	ENSCJAG00000011081	scaffold:C_jacchus3.2.1:GL286358.1:1:17342:1	14173	14630	D	<no descrition>
ENSCJAG00000023076	NOVEL	protein_coding	ENSCJAG00000023076	chromosome:C_jacchus3.2.1:4:1:171630274:1	82755932	82756794	D	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7E9G1]
ENSCJAG00000014713	KNOWN_BY_PROJECTION	protein_coding	TMEM72	scaffold:C_jacchus3.2.1:GL285848.1:1:76306:1	110	3359	D	transmembrane protein 72 [Source:HGNC Symbol;Acc:HGNC:31658]
ENSCJAG00000022375	NOVEL	protein_coding	ENSCJAG00000022375	chromosome:C_jacchus3.2.1:4:1:171630274:1	76756056	76756457	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7FV34]
ENSCJAG00000000536	NOVEL	protein_coding	ENSCJAG00000000536	scaffold:C_jacchus3.2.1:ACFV01179481.1:1:17103:1	947	16007	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000916}  [Source:UniProtKB/TrEMBL;Acc:H9KVL3]
ENSCJAG00000022374	KNOWN_BY_PROJECTION	protein_coding	HTR1B	chromosome:C_jacchus3.2.1:4:1:171630274:1	75810933	75812954	R	5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled [Source:HGNC Symbol;Acc:HGNC:5287]
ENSCJAG00000022373	NOVEL	protein_coding	ENSCJAG00000022373	chromosome:C_jacchus3.2.1:4:1:171630274:1	72509416	72509832	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041002}  [Source:UniProtKB/TrEMBL;Acc:F7FV51]
ENSCJAG00000002359	KNOWN	protein_coding	CENPM	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	413087	416107	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004261}  [Source:UniProtKB/TrEMBL;Acc:H9KVT0]
ENSCJAG00000005402	NOVEL	protein_coding	ENSCJAG00000005402	scaffold:C_jacchus3.2.1:ACFV01183216.1:1:9137:1	4898	5817	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009865}  [Source:UniProtKB/TrEMBL;Acc:H9KW71]
ENSCJAG00000007271	NOVEL	protein_coding	ENSCJAG00000007271	scaffold:C_jacchus3.2.1:GL285997.1:1:50956:1	15314	15634	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013536}  [Source:UniProtKB/TrEMBL;Acc:H9KWD3]
ENSCJAG00000015317	NOVEL	protein_coding	ENSCJAG00000015317	scaffold:C_jacchus3.2.1:ACFV01188862.1:1:9730:1	2732	3353	D	<no descrition>
ENSCJAG00000035382	NOVEL	protein_coding	ENSCJAG00000035382	chromosome:C_jacchus3.2.1:4:1:171630274:1	53647492	53648660	R	<no descrition>
ENSCJAG00000022394	KNOWN_BY_PROJECTION	protein_coding	PGK2	chromosome:C_jacchus3.2.1:4:1:171630274:1	51003520	51005151	R	phosphoglycerate kinase 2 [Source:HGNC Symbol;Acc:HGNC:8898]
ENSCJAG00000006377	KNOWN_BY_PROJECTION	protein_coding	ZNF43	scaffold:C_jacchus3.2.1:GL285944.1:1:21153:1	5960	8983	R	zinc finger protein 43 [Source:HGNC Symbol;Acc:HGNC:13109]
ENSCJAG00000022396	NOVEL	protein_coding	ENSCJAG00000022396	chromosome:C_jacchus3.2.1:4:1:171630274:1	45582050	45582304	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041025}  [Source:UniProtKB/TrEMBL;Acc:F7FGW9]
ENSCJAG00000023342	KNOWN	protein_coding	ENSCJAG00000023342	chromosome:C_jacchus3.2.1:4:1:171630274:1	44199602	44199919	R	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F7DD73]
ENSCJAG00000023341	KNOWN_BY_PROJECTION	protein_coding	C6orf226	chromosome:C_jacchus3.2.1:4:1:171630274:1	44176662	44177218	R	chromosome 6 open reading frame 226 [Source:HGNC Symbol;Acc:HGNC:34431]
ENSCJAG00000023340	NOVEL	protein_coding	ENSCJAG00000023340	chromosome:C_jacchus3.2.1:4:1:171630274:1	44024845	44025900	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041846}  [Source:UniProtKB/TrEMBL;Acc:F7DDA3]
ENSCJAG00000023338	NOVEL	protein_coding	ENSCJAG00000023338	chromosome:C_jacchus3.2.1:4:1:171630274:1	43240687	43241088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041844}  [Source:UniProtKB/TrEMBL;Acc:F7DDB5]
ENSCJAG00000037464	NOVEL	protein_coding	ENSCJAG00000037464	chromosome:C_jacchus3.2.1:4:1:171630274:1	38194786	38194965	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052367}  [Source:UniProtKB/TrEMBL;Acc:F7INQ8]
ENSCJAG00000031522	NOVEL	protein_coding	ENSCJAG00000031522	chromosome:C_jacchus3.2.1:4:1:171630274:1	39320389	39320613	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042787}  [Source:UniProtKB/TrEMBL;Acc:F6UGJ9]
ENSCJAG00000011339	NOVEL	protein_coding	ENSCJAG00000011339	scaffold:C_jacchus3.2.1:ACFV01199709.1:1:2132:1	886	2126	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020856}  [Source:UniProtKB/TrEMBL;Acc:H9KWT9]
ENSCJAG00000005670	KNOWN	protein_coding	ZFAND3	chromosome:C_jacchus3.2.1:4:1:171630274:1	38828563	39176501	D	AN1-type zinc finger protein 3 {ECO:0000313|EMBL:JAB08438.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010420}  [Source:UniProtKB/TrEMBL;Acc:F7HWW1]
ENSCJAG00000022340	NOVEL	protein_coding	ENSCJAG00000022340	chromosome:C_jacchus3.2.1:4:1:171630274:1	38069404	38069781	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040980}  [Source:UniProtKB/TrEMBL;Acc:F7IT28]
ENSCJAG00000006216	NOVEL	protein_coding	ENSCJAG00000006216	scaffold:C_jacchus3.2.1:ACFV01182568.1:1:19665:1	13554	16233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011464}  [Source:UniProtKB/TrEMBL;Acc:H9KWB5]
ENSCJAG00000023088	NOVEL	protein_coding	ENSCJAG00000023088	chromosome:C_jacchus3.2.1:4:1:171630274:1	35390567	35391220	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041621}  [Source:UniProtKB/TrEMBL;Acc:F7DEQ0]
ENSCJAG00000023089	NOVEL	protein_coding	ENSCJAG00000023089	chromosome:C_jacchus3.2.1:4:1:171630274:1	36306790	36307374	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041622}  [Source:UniProtKB/TrEMBL;Acc:F7DEP3]
ENSCJAG00000031120	NOVEL	protein_coding	ENSCJAG00000031120	scaffold:C_jacchus3.2.1:ACFV01182568.1:1:19665:1	7133	8757	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042927}  [Source:UniProtKB/TrEMBL;Acc:H9KY00]
ENSCJAG00000031259	NOVEL	protein_coding	ENSCJAG00000031259	chromosome:C_jacchus3.2.1:4:1:171630274:1	34431916	34432527	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040932}  [Source:UniProtKB/TrEMBL;Acc:F7HXG4]
ENSCJAG00000001573	KNOWN_BY_PROJECTION	protein_coding	CHD9	chromosome:C_jacchus3.2.1:20:1:44557958:1	7000519	7313840	D	chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
ENSCJAG00000000944	KNOWN_BY_PROJECTION	protein_coding	FAM83A	chromosome:C_jacchus3.2.1:16:1:96796970:1	71608008	71622079	R	family with sequence similarity 83, member A [Source:HGNC Symbol;Acc:HGNC:28210]
ENSCJAG00000009038	KNOWN	protein_coding	EEF2K	chromosome:C_jacchus3.2.1:12:1:121768101:1	21028228	21110041	D	Eukaryotic elongation factor 2 kinase {ECO:0000313|EMBL:JAB05366.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016581}  [Source:UniProtKB/TrEMBL;Acc:F7A4C9]
ENSCJAG00000020750	KNOWN_BY_PROJECTION	protein_coding	HCK	chromosome:C_jacchus3.2.1:5:1:159171411:1	5195108	5246290	R	HCK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:4840]
ENSCJAG00000001782	KNOWN_BY_PROJECTION	protein_coding	FGG	chromosome:C_jacchus3.2.1:3:1:190850796:1	37863147	38033637	D	fibrinogen gamma chain [Source:HGNC Symbol;Acc:HGNC:3694]
ENSCJAG00000000844	KNOWN	protein_coding	FBXO32	chromosome:C_jacchus3.2.1:16:1:96796970:1	71282162	71320609	D	F-box only protein 32 isoform 1 {ECO:0000313|EMBL:JAB11568.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001466}  [Source:UniProtKB/TrEMBL;Acc:F6WK33]
ENSCJAG00000016385	NOVEL	pseudogene	ENSCJAG00000016385	chromosome:C_jacchus3.2.1:2:1:204313951:1	136166757	136167300	R	<no descrition>
ENSCJAG00000033271	NOVEL	protein_coding	ENSCJAG00000033271	chromosome:C_jacchus3.2.1:20:1:44557958:1	4466875	4469095	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050756}  [Source:UniProtKB/TrEMBL;Acc:F7D6W8]
ENSCJAG00000001791	KNOWN_BY_PROJECTION	protein_coding	SNX20	chromosome:C_jacchus3.2.1:20:1:44557958:1	4356734	4369814	R	sorting nexin 20 [Source:HGNC Symbol;Acc:HGNC:30390]
ENSCJAG00000032841	KNOWN_BY_PROJECTION	protein_coding	ELF2	chromosome:C_jacchus3.2.1:4:1:171630274:1	27609091	27610692	D	E74-like factor 2 (ets domain transcription factor) [Source:HGNC Symbol;Acc:HGNC:3317]
ENSCJAG00000019597	KNOWN_BY_PROJECTION	protein_coding	FOXC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	27468138	27469490	R	forkhead box C1 [Source:HGNC Symbol;Acc:HGNC:3800]
ENSCJAG00000001829	NOVEL	pseudogene	ENSCJAG00000001829	chromosome:C_jacchus3.2.1:20:1:44557958:1	4294666	4295040	R	<no descrition>
ENSCJAG00000000801	NOVEL	protein_coding	ENSCJAG00000000801	chromosome:C_jacchus3.2.1:16:1:96796970:1	70792859	70807103	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001367}  [Source:UniProtKB/TrEMBL;Acc:F7BJD7]
ENSCJAG00000019624	NOVEL	pseudogene	ENSCJAG00000019624	chromosome:C_jacchus3.2.1:4:1:171630274:1	26510632	26510861	R	<no descrition>
ENSCJAG00000020742	KNOWN	protein_coding	TM9SF4	chromosome:C_jacchus3.2.1:5:1:159171411:1	5126555	5183844	R	Transmembrane 9 superfamily member 4 {ECO:0000313|EMBL:JAB07047.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038594}  [Source:UniProtKB/TrEMBL;Acc:F7I6V1]
ENSCJAG00000009110	KNOWN_BY_PROJECTION	protein_coding	C16orf52	chromosome:C_jacchus3.2.1:12:1:121768101:1	20810477	20892089	D	chromosome 16 open reading frame 52 [Source:HGNC Symbol;Acc:HGNC:27087]
ENSCJAG00000000750	KNOWN	protein_coding	RNF139	chromosome:C_jacchus3.2.1:16:1:96796970:1	70315195	70330111	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001283}  [Source:UniProtKB/TrEMBL;Acc:F6XWR8]
ENSCJAG00000031378	NOVEL	protein_coding	ENSCJAG00000031378	chromosome:C_jacchus3.2.1:3:1:190850796:1	37358236	37359370	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048128}  [Source:UniProtKB/TrEMBL;Acc:F7HE55]
ENSCJAG00000016409	KNOWN_BY_PROJECTION	protein_coding	TNPO1	chromosome:C_jacchus3.2.1:2:1:204313951:1	135565148	135656525	R	transportin 1 [Source:HGNC Symbol;Acc:HGNC:6401]
ENSCJAG00000019646	KNOWN	protein_coding	SERPINB1	chromosome:C_jacchus3.2.1:4:1:171630274:1	26142700	26153061	D	Leukocyte elastase inhibitor {ECO:0000313|EMBL:JAB29310.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046417}  [Source:UniProtKB/TrEMBL;Acc:F7ISC2]
ENSCJAG00000001832	KNOWN	protein_coding	BRD7	chromosome:C_jacchus3.2.1:20:1:44557958:1	4007415	4048470	R	Bromodomain-containing protein 7 isoform 2 {ECO:0000313|EMBL:JAB02520.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003394}  [Source:UniProtKB/TrEMBL;Acc:F7CVS5]
ENSCJAG00000034194	NOVEL	pseudogene	ENSCJAG00000034194	chromosome:C_jacchus3.2.1:3:1:190850796:1	36930646	36930982	D	<no descrition>
ENSCJAG00000016496	KNOWN_BY_PROJECTION	protein_coding	FCHO2	chromosome:C_jacchus3.2.1:2:1:204313951:1	135388334	135525348	R	FCH domain only 2 [Source:HGNC Symbol;Acc:HGNC:25180]
ENSCJAG00000032009	NOVEL	pseudogene	ENSCJAG00000032009	chromosome:C_jacchus3.2.1:5:1:159171411:1	4559980	4560410	R	<no descrition>
ENSCJAG00000021131	KNOWN_BY_PROJECTION	protein_coding	LARP4	chromosome:C_jacchus3.2.1:9:1:124281992:1	39221296	39304626	D	La ribonucleoprotein domain family, member 4 [Source:HGNC Symbol;Acc:HGNC:24320]
ENSCJAG00000021122	KNOWN_BY_PROJECTION	protein_coding	FAM186A	chromosome:C_jacchus3.2.1:9:1:124281992:1	39145281	39212463	R	family with sequence similarity 186, member A [Source:HGNC Symbol;Acc:HGNC:26980]
ENSCJAG00000012620	KNOWN	protein_coding	MYC	chromosome:C_jacchus3.2.1:16:1:96796970:1	66986933	66991981	R	Myc proto-oncogene protein  [Source:UniProtKB/Swiss-Prot;Acc:P49032]
ENSCJAG00000021124	NOVEL	pseudogene	ENSCJAG00000021124	chromosome:C_jacchus3.2.1:9:1:124281992:1	39023214	39024205	R	<no descrition>
ENSCJAG00000019659	KNOWN_BY_PROJECTION	protein_coding	SERPINB9	chromosome:C_jacchus3.2.1:4:1:171630274:1	26075223	26090381	D	serpin peptidase inhibitor, clade B (ovalbumin), member 9 [Source:HGNC Symbol;Acc:HGNC:8955]
ENSCJAG00000016582	KNOWN_BY_PROJECTION	protein_coding	TMEM171	chromosome:C_jacchus3.2.1:2:1:204313951:1	135338471	135349214	R	transmembrane protein 171 [Source:HGNC Symbol;Acc:HGNC:27031]
ENSCJAG00000017727	NOVEL	protein_coding	ENSCJAG00000017727	chromosome:C_jacchus3.2.1:4:1:171630274:1	25970329	25988592	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032694}  [Source:UniProtKB/TrEMBL;Acc:F7HBQ5]
ENSCJAG00000001736	KNOWN	protein_coding	GUCY1A3	chromosome:C_jacchus3.2.1:3:1:190850796:1	36620008	36688371	R	Guanylate cyclase soluble subunit alpha-3 isoform A {ECO:0000313|EMBL:JAB12404.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043550}  [Source:UniProtKB/TrEMBL;Acc:F7IRP1]
ENSCJAG00000001996	NOVEL	pseudogene	ENSCJAG00000001996	chromosome:C_jacchus3.2.1:20:1:44557958:1	3781444	3781909	R	<no descrition>
ENSCJAG00000017724	NOVEL	protein_coding	ENSCJAG00000017724	chromosome:C_jacchus3.2.1:4:1:171630274:1	25895724	25899294	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032675}  [Source:UniProtKB/TrEMBL;Acc:F7HGX8]
ENSCJAG00000001972	KNOWN	protein_coding	HEATR3	chromosome:C_jacchus3.2.1:20:1:44557958:1	3740822	3783880	D	HEAT repeat-containing protein 3 {ECO:0000313|EMBL:JAB02302.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003595}  [Source:UniProtKB/TrEMBL;Acc:F7DDT0]
ENSCJAG00000016600	NOVEL	protein_coding	ENSCJAG00000016600	chromosome:C_jacchus3.2.1:2:1:204313951:1	134939586	134947303	R	<no descrition>
ENSCJAG00000016612	KNOWN_BY_PROJECTION	protein_coding	ANKRA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	134875101	134889388	D	ankyrin repeat, family A (RFXANK-like), 2 [Source:HGNC Symbol;Acc:HGNC:13208]
ENSCJAG00000001997	KNOWN_BY_PROJECTION	protein_coding	CNEP1R1	chromosome:C_jacchus3.2.1:20:1:44557958:1	3699483	3710306	D	CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:26759]
ENSCJAG00000011971	NOVEL	protein_coding	ENSCJAG00000011971	chromosome:C_jacchus3.2.1:20:1:44557958:1	3535498	3537349	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050824}  [Source:UniProtKB/TrEMBL;Acc:F7GD92]
ENSCJAG00000012483	KNOWN	protein_coding	ASAP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	64274081	64639674	D	Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB04173.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022999}  [Source:UniProtKB/TrEMBL;Acc:F7I3I8]
ENSCJAG00000016617	KNOWN_BY_PROJECTION	protein_coding	UTP15	chromosome:C_jacchus3.2.1:2:1:204313951:1	134860030	134875032	R	UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25758]
ENSCJAG00000009206	KNOWN_BY_PROJECTION	protein_coding	ZP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	20594775	20612768	R	zona pellucida glycoprotein 2 (sperm receptor) [Source:HGNC Symbol;Acc:HGNC:13188]
ENSCJAG00000034599	NOVEL	protein_coding	ENSCJAG00000034599	chromosome:C_jacchus3.2.1:16:1:96796970:1	62914561	62915201	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7GK99]
ENSCJAG00000016661	NOVEL	pseudogene	ENSCJAG00000016661	chromosome:C_jacchus3.2.1:2:1:204313951:1	134469444	134469679	R	<no descrition>
ENSCJAG00000015617	KNOWN_BY_PROJECTION	protein_coding	DNMT3B	chromosome:C_jacchus3.2.1:5:1:159171411:1	4462988	4512157	R	DNA (cytosine-5-)-methyltransferase 3 beta [Source:HGNC Symbol;Acc:HGNC:2979]
ENSCJAG00000009272	KNOWN	protein_coding	TMEM159	chromosome:C_jacchus3.2.1:12:1:121768101:1	20550914	20576226	D	Promethin {ECO:0000313|EMBL:JAB03429.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035513}  [Source:UniProtKB/TrEMBL;Acc:F7I8L4]
ENSCJAG00000004367	KNOWN_BY_PROJECTION	protein_coding	EFR3A	chromosome:C_jacchus3.2.1:16:1:96796970:1	62712352	62809570	R	EFR3 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28970]
ENSCJAG00000021115	KNOWN_BY_PROJECTION	protein_coding	LIMA1	chromosome:C_jacchus3.2.1:9:1:124281992:1	38983001	39098154	R	LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636]
ENSCJAG00000004467	NOVEL	protein_coding	ENSCJAG00000004467	chromosome:C_jacchus3.2.1:16:1:96796970:1	62635892	62698087	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008096}  [Source:UniProtKB/TrEMBL;Acc:F6XL88]
ENSCJAG00000036496	KNOWN_BY_PROJECTION	protein_coding	HHLA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	62612711	62643538	D	HERV-H LTR-associating 1 [Source:HGNC Symbol;Acc:HGNC:4904]
ENSCJAG00000003888	KNOWN_BY_PROJECTION	protein_coding	ANXA2	chromosome:C_jacchus3.2.1:10:1:132174527:1	2650317	2705902	R	annexin A2 [Source:HGNC Symbol;Acc:HGNC:537]
ENSCJAG00000004480	KNOWN_BY_PROJECTION	protein_coding	KCNQ3	chromosome:C_jacchus3.2.1:16:1:96796970:1	62533720	62591233	D	potassium channel, voltage gated KQT-like subfamily Q, member 3 [Source:HGNC Symbol;Acc:HGNC:6297]
ENSCJAG00000001694	KNOWN	protein_coding	GUCY1B3	chromosome:C_jacchus3.2.1:3:1:190850796:1	36546526	36593825	R	Guanylate cyclase soluble subunit beta-1 {ECO:0000313|EMBL:JAB03317.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003094}  [Source:UniProtKB/TrEMBL;Acc:F7FFI1]
ENSCJAG00000011975	KNOWN_BY_PROJECTION	protein_coding	ZNF423	chromosome:C_jacchus3.2.1:20:1:44557958:1	3151322	3332433	R	zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
ENSCJAG00000004582	KNOWN_BY_PROJECTION	protein_coding	TMEM71	chromosome:C_jacchus3.2.1:16:1:96796970:1	61943211	61995322	D	transmembrane protein 71 [Source:HGNC Symbol;Acc:HGNC:26572]
ENSCJAG00000004403	NOVEL	protein_coding	ENSCJAG00000004403	chromosome:C_jacchus3.2.1:20:1:44557958:1	3126999	3137483	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007974}  [Source:UniProtKB/TrEMBL;Acc:F6Z8M4]
ENSCJAG00000012672	KNOWN_BY_PROJECTION	protein_coding	C16orf78	chromosome:C_jacchus3.2.1:20:1:44557958:1	3021467	3050029	D	chromosome 16 open reading frame 78 [Source:HGNC Symbol;Acc:HGNC:28479]
ENSCJAG00000031786	NOVEL	protein_coding	ENSCJAG00000031786	chromosome:C_jacchus3.2.1:20:1:44557958:1	2282271	2283332	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042113}  [Source:UniProtKB/TrEMBL;Acc:F6VTG7]
ENSCJAG00000009350	KNOWN	protein_coding	LYRM1	chromosome:C_jacchus3.2.1:12:1:121768101:1	20316097	20340978	D	LYR motif-containing protein 1 {ECO:0000313|EMBL:JAB03575.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042033}  [Source:UniProtKB/TrEMBL;Acc:F6RTD1]
ENSCJAG00000012634	KNOWN	protein_coding	SIAH1	chromosome:C_jacchus3.2.1:20:1:44557958:1	1888760	1988015	R	E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}  [Source:UniProtKB/TrEMBL;Acc:F6SK11]
ENSCJAG00000023331	KNOWN_BY_PROJECTION	protein_coding	FOXB1	chromosome:C_jacchus3.2.1:10:1:132174527:1	2274235	2276675	D	forkhead box B1 [Source:HGNC Symbol;Acc:HGNC:3799]
ENSCJAG00000017707	KNOWN	protein_coding	RIPK1	chromosome:C_jacchus3.2.1:4:1:171630274:1	25776737	25821278	R	Receptor-interacting serine/threonine-protein kinase 1 {ECO:0000313|EMBL:JAB02982.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032651}  [Source:UniProtKB/TrEMBL;Acc:F7DIC8]
ENSCJAG00000021097	KNOWN	protein_coding	CERS5	chromosome:C_jacchus3.2.1:9:1:124281992:1	38930156	38975401	R	Ceramide synthase 5 {ECO:0000313|EMBL:JAB06513.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039286}  [Source:UniProtKB/TrEMBL;Acc:F7F1C1]
ENSCJAG00000004602	KNOWN_BY_PROJECTION	protein_coding	TG	chromosome:C_jacchus3.2.1:16:1:96796970:1	61547467	61829029	R	thyroglobulin [Source:HGNC Symbol;Acc:HGNC:11764]
ENSCJAG00000012577	KNOWN	protein_coding	LONP2	chromosome:C_jacchus3.2.1:20:1:44557958:1	1752254	1884447	D	Lon protease homolog 2, peroxisomal {ECO:0000256|HAMAP-Rule:MF_03121}  [Source:UniProtKB/TrEMBL;Acc:F7I462]
ENSCJAG00000001672	KNOWN	protein_coding	TDO2	chromosome:C_jacchus3.2.1:3:1:190850796:1	36420575	36437132	R	Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_03020}  [Source:UniProtKB/TrEMBL;Acc:F7GQ44]
ENSCJAG00000002002	KNOWN	protein_coding	FAM81A	chromosome:C_jacchus3.2.1:10:1:132174527:1	1676500	1776086	D	Protein FAM81A {ECO:0000313|EMBL:JAB12587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003612}  [Source:UniProtKB/TrEMBL;Acc:F7H9Z5]
ENSCJAG00000001999	KNOWN_BY_PROJECTION	protein_coding	LDHAL6B	chromosome:C_jacchus3.2.1:10:1:132174527:1	1429489	1431327	D	lactate dehydrogenase A-like 6B [Source:HGNC Symbol;Acc:HGNC:21481]
ENSCJAG00000004700	KNOWN_BY_PROJECTION	protein_coding	WISP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	61472432	61486680	R	WNT1 inducible signaling pathway protein 1 [Source:HGNC Symbol;Acc:HGNC:12769]
ENSCJAG00000021089	KNOWN_BY_PROJECTION	protein_coding	GPD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	38900743	38907811	D	glycerol-3-phosphate dehydrogenase 1 (soluble) [Source:HGNC Symbol;Acc:HGNC:4455]
ENSCJAG00000018589	KNOWN_BY_PROJECTION	protein_coding	BPIFB6	chromosome:C_jacchus3.2.1:5:1:159171411:1	4263697	4276157	R	BPI fold containing family B, member 6 [Source:HGNC Symbol;Acc:HGNC:16504]
ENSCJAG00000016664	KNOWN_BY_PROJECTION	protein_coding	HEXB	chromosome:C_jacchus3.2.1:2:1:204313951:1	133676745	133766217	R	hexosaminidase B (beta polypeptide) [Source:HGNC Symbol;Acc:HGNC:4879]
ENSCJAG00000005232	KNOWN_BY_PROJECTION	protein_coding	ST3GAL1	chromosome:C_jacchus3.2.1:16:1:96796970:1	61227793	61238718	D	ST3 beta-galactoside alpha-2,3-sialyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10862]
ENSCJAG00000018577	NOVEL	protein_coding	ENSCJAG00000018577	chromosome:C_jacchus3.2.1:5:1:159171411:1	4134899	4151089	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034470}  [Source:UniProtKB/TrEMBL;Acc:F7IML0]
ENSCJAG00000004348	KNOWN_BY_PROJECTION	protein_coding	ZFAT	chromosome:C_jacchus3.2.1:16:1:96796970:1	59944217	60140499	D	zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
ENSCJAG00000004331	KNOWN	protein_coding	KHDRBS3	chromosome:C_jacchus3.2.1:16:1:96796970:1	59001343	59189413	R	KH domain-containing, RNA-binding, signal transduction-associated protein 3 {ECO:0000313|EMBL:JAB12386.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007855}  [Source:UniProtKB/TrEMBL;Acc:F7CMV6]
ENSCJAG00000004328	NOVEL	pseudogene	ENSCJAG00000004328	chromosome:C_jacchus3.2.1:16:1:96796970:1	58633783	58634159	R	<no descrition>
ENSCJAG00000021079	KNOWN	protein_coding	SMARCD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	38880136	38897617	D	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform b {ECO:0000313|EMBL:JAB04256.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051561}  [Source:UniProtKB/TrEMBL;Acc:F6UXB9]
ENSCJAG00000012514	KNOWN_BY_PROJECTION	protein_coding	ABCC11	chromosome:C_jacchus3.2.1:20:1:44557958:1	1676785	1754993	R	ATP-binding cassette, sub-family C (CFTR/MRP), member 11 [Source:HGNC Symbol;Acc:HGNC:14639]
ENSCJAG00000001979	KNOWN	protein_coding	MYO1E	chromosome:C_jacchus3.2.1:10:1:132174527:1	1362573	1601015	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003597}; Unconventional myosin-Ie {ECO:0000313|EMBL:JAB09024.1}  [Source:UniProtKB/TrEMBL;Acc:F7DDP5]
ENSCJAG00000009400	KNOWN_BY_PROJECTION	protein_coding	ERI2	chromosome:C_jacchus3.2.1:12:1:121768101:1	20203566	20215648	R	ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
ENSCJAG00000016802	KNOWN	protein_coding	GFM2	chromosome:C_jacchus3.2.1:2:1:204313951:1	133629734	133676537	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031044}  [Source:UniProtKB/TrEMBL;Acc:F7HYS3]
ENSCJAG00000001632	KNOWN	protein_coding	GLRB	chromosome:C_jacchus3.2.1:3:1:190850796:1	35061641	35151492	R	Glycine receptor subunit beta isoform A {ECO:0000313|EMBL:JAB18832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042055}  [Source:UniProtKB/TrEMBL;Acc:F6RHN0]
ENSCJAG00000004235	KNOWN_BY_PROJECTION	protein_coding	COL22A1	chromosome:C_jacchus3.2.1:16:1:96796970:1	55823996	56168991	D	collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22989]
ENSCJAG00000016874	KNOWN	protein_coding	NSA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	133620996	133629700	R	Ribosome biogenesis protein NSA2 homolog isoform 1 {ECO:0000313|EMBL:JAB06247.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031064}  [Source:UniProtKB/TrEMBL;Acc:F7HWF8]
ENSCJAG00000018324	KNOWN	protein_coding	PHKB	chromosome:C_jacchus3.2.1:20:1:44557958:1	926322	1162858	D	Phosphorylase b kinase regulatory subunit beta isoform b {ECO:0000313|EMBL:JAB26214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034047}  [Source:UniProtKB/TrEMBL;Acc:F7ABD1]
ENSCJAG00000035643	KNOWN_BY_PROJECTION	protein_coding	ACSM3	chromosome:C_jacchus3.2.1:12:1:121768101:1	20163555	20204372	D	acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
ENSCJAG00000016884	KNOWN	protein_coding	FAM169A	chromosome:C_jacchus3.2.1:2:1:204313951:1	133544548	133616697	D	Protein FAM169A {ECO:0000313|EMBL:JAB03438.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031108}  [Source:UniProtKB/TrEMBL;Acc:F7IRY3]
ENSCJAG00000033912	NOVEL	pseudogene	ENSCJAG00000033912	chromosome:C_jacchus3.2.1:2:1:204313951:1	133410613	133410914	R	<no descrition>
ENSCJAG00000016937	NOVEL	pseudogene	ENSCJAG00000016937	chromosome:C_jacchus3.2.1:2:1:204313951:1	133452171	133452490	D	<no descrition>
ENSCJAG00000016941	KNOWN_BY_PROJECTION	protein_coding	GCNT4	chromosome:C_jacchus3.2.1:2:1:204313951:1	133344519	133346143	D	glucosaminyl (N-acetyl) transferase 4, core 2 [Source:HGNC Symbol;Acc:HGNC:17973]
ENSCJAG00000021071	KNOWN_BY_PROJECTION	protein_coding	ASIC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	38846950	38878897	D	acid sensing (proton gated) ion channel 1 [Source:HGNC Symbol;Acc:HGNC:100]
ENSCJAG00000018388	KNOWN	protein_coding	ITFG1	chromosome:C_jacchus3.2.1:20:1:44557958:1	610222	926217	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046851}  [Source:UniProtKB/TrEMBL;Acc:F7IMD4]
ENSCJAG00000021058	KNOWN_BY_PROJECTION	protein_coding	RACGAP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	38774441	38810986	R	Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
ENSCJAG00000017637	NOVEL	protein_coding	ENSCJAG00000017637	chromosome:C_jacchus3.2.1:4:1:171630274:1	25661567	25735266	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050905}  [Source:UniProtKB/TrEMBL;Acc:F6PPH0]
ENSCJAG00000021055	KNOWN_BY_PROJECTION	protein_coding	AQP6	chromosome:C_jacchus3.2.1:9:1:124281992:1	38755888	38758760	D	aquaporin 6, kidney specific [Source:HGNC Symbol;Acc:HGNC:639]
ENSCJAG00000004233	KNOWN	protein_coding	KCNK9	chromosome:C_jacchus3.2.1:16:1:96796970:1	54991345	55089193	D	Potassium channel subfamily K member 9 {ECO:0000313|EMBL:JAB45487.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007663}  [Source:UniProtKB/TrEMBL;Acc:F6TNM6]
ENSCJAG00000021052	KNOWN_BY_PROJECTION	protein_coding	AQP5	chromosome:C_jacchus3.2.1:9:1:124281992:1	38742742	38747698	D	aquaporin 5 [Source:HGNC Symbol;Acc:HGNC:638]
ENSCJAG00000004191	KNOWN_BY_PROJECTION	protein_coding	TRAPPC9	chromosome:C_jacchus3.2.1:16:1:96796970:1	54231467	54372666	D	trafficking protein particle complex 9 [Source:HGNC Symbol;Acc:HGNC:30832]
ENSCJAG00000020394	NOVEL	protein_coding	ENSCJAG00000020394	chromosome:C_jacchus3.2.1:10:1:132174527:1	1191383	1192315	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052412}  [Source:UniProtKB/TrEMBL;Acc:F7I9L8]
ENSCJAG00000017603	KNOWN	protein_coding	PXDC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	25113390	25143787	D	PX domain-containing protein 1 {ECO:0000313|EMBL:JAB09497.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032434}  [Source:UniProtKB/TrEMBL;Acc:F7E000]
ENSCJAG00000003921	KNOWN_BY_PROJECTION	protein_coding	PTK2	chromosome:C_jacchus3.2.1:16:1:96796970:1	53641301	54009808	D	protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]
ENSCJAG00000001564	KNOWN_BY_PROJECTION	protein_coding	GRIA2	chromosome:C_jacchus3.2.1:3:1:190850796:1	34881662	35024691	R	glutamate receptor, ionotropic, AMPA 2 [Source:HGNC Symbol;Acc:HGNC:4572]
ENSCJAG00000010280	KNOWN	protein_coding	ORC6	chromosome:C_jacchus3.2.1:20:1:44557958:1	122795	131617	D	Origin recognition complex subunit 6 {ECO:0000313|EMBL:JAB07211.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018942}  [Source:UniProtKB/TrEMBL;Acc:F7GVD4]
ENSCJAG00000003842	KNOWN_BY_PROJECTION	protein_coding	DENND3	chromosome:C_jacchus3.2.1:16:1:96796970:1	53431802	53501093	R	DENN/MADD domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29134]
ENSCJAG00000003889	KNOWN_BY_PROJECTION	protein_coding	SLC45A4	chromosome:C_jacchus3.2.1:16:1:96796970:1	53407749	53417832	D	solute carrier family 45, member 4 [Source:HGNC Symbol;Acc:HGNC:29196]
ENSCJAG00000014661	NOVEL	pseudogene	ENSCJAG00000014661	scaffold:C_jacchus3.2.1:GL285151.1:1:17321:1	16428	16594	D	<no descrition>
ENSCJAG00000010371	NOVEL	protein_coding	ENSCJAG00000010371	chromosome:C_jacchus3.2.1:16:1:96796970:1	53107319	53237742	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048624}  [Source:UniProtKB/TrEMBL;Acc:F6TM32]
ENSCJAG00000010357	KNOWN_BY_PROJECTION	protein_coding	TSNARE1	chromosome:C_jacchus3.2.1:16:1:96796970:1	52268172	52391239	D	t-SNARE domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26437]
ENSCJAG00000005429	KNOWN_BY_PROJECTION	protein_coding	PLXND1	scaffold:C_jacchus3.2.1:ACFV01184346.1:1:13616:1	605	13063	R	plexin D1 [Source:HGNC Symbol;Acc:HGNC:9107]
ENSCJAG00000001549	KNOWN	protein_coding	FAM198B	chromosome:C_jacchus3.2.1:3:1:190850796:1	33994414	34047298	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002783}  [Source:UniProtKB/TrEMBL;Acc:F7IKU9]
ENSCJAG00000010346	NOVEL	protein_coding	ENSCJAG00000010346	chromosome:C_jacchus3.2.1:16:1:96796970:1	52125452	52154586	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019064}  [Source:UniProtKB/TrEMBL;Acc:F6T754]
ENSCJAG00000031411	NOVEL	protein_coding	ENSCJAG00000031411	chromosome:C_jacchus3.2.1:16:1:96796970:1	52149388	52149882	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046485}  [Source:UniProtKB/TrEMBL;Acc:F7IK79]
ENSCJAG00000001571	KNOWN	protein_coding	PRMT2	chromosome:C_jacchus3.2.1:21:1:50472720:1	50425323	50456418	D	Protein arginine N-methyltransferase 2 isoform 1 {ECO:0000313|EMBL:JAB11016.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002855}  [Source:UniProtKB/TrEMBL;Acc:F7I944]
ENSCJAG00000021037	NOVEL	pseudogene	ENSCJAG00000021037	chromosome:C_jacchus3.2.1:9:1:124281992:1	38531718	38532122	D	<no descrition>
ENSCJAG00000032061	NOVEL	protein_coding	ENSCJAG00000032061	chromosome:C_jacchus3.2.1:16:1:96796970:1	52066331	52086705	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012011}  [Source:UniProtKB/TrEMBL;Acc:F7H9E0]
ENSCJAG00000021476	KNOWN	protein_coding	JRK	chromosome:C_jacchus3.2.1:16:1:96796970:1	51976516	51978719	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039978}  [Source:UniProtKB/TrEMBL;Acc:F7H414]
ENSCJAG00000021484	KNOWN_BY_PROJECTION	protein_coding	LY6K	chromosome:C_jacchus3.2.1:16:1:96796970:1	51942662	51960263	R	lymphocyte antigen 6 complex, locus K [Source:HGNC Symbol;Acc:HGNC:24225]
ENSCJAG00000020395	KNOWN	protein_coding	SLTM	chromosome:C_jacchus3.2.1:10:1:132174527:1	1108598	1162347	R	SAFB-like transcription modulator isoform a {ECO:0000313|EMBL:JAB08599.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037951}  [Source:UniProtKB/TrEMBL;Acc:F6UP87]
ENSCJAG00000001606	KNOWN	protein_coding	S100B	chromosome:C_jacchus3.2.1:21:1:50472720:1	50404563	50410936	R	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F7HBN6]
ENSCJAG00000009504	KNOWN_BY_PROJECTION	protein_coding	PDILT	chromosome:C_jacchus3.2.1:12:1:121768101:1	19968660	20016011	R	protein disulfide isomerase-like, testis expressed [Source:HGNC Symbol;Acc:HGNC:27338]
ENSCJAG00000021481	KNOWN	protein_coding	THEM6	chromosome:C_jacchus3.2.1:16:1:96796970:1	51915726	51921386	R	UPF0670 protein THEM6 {ECO:0000313|EMBL:JAB04166.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039994}  [Source:UniProtKB/TrEMBL;Acc:F7GYU5]
ENSCJAG00000021475	KNOWN_BY_PROJECTION	protein_coding	SLURP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	51899732	51910518	D	secreted LY6/PLAUR domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18746]
ENSCJAG00000021471	KNOWN	protein_coding	LYNX1	chromosome:C_jacchus3.2.1:16:1:96796970:1	51879171	51879952	D	Ly-6/neurotoxin-like protein 1 isoform c {ECO:0000313|EMBL:JAB03393.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039970}  [Source:UniProtKB/TrEMBL;Acc:F7H437]
ENSCJAG00000021470	KNOWN_BY_PROJECTION	protein_coding	LY6D	chromosome:C_jacchus3.2.1:16:1:96796970:1	51861021	51862357	D	lymphocyte antigen 6 complex, locus D [Source:HGNC Symbol;Acc:HGNC:13348]
ENSCJAG00000021469	KNOWN_BY_PROJECTION	protein_coding	GML	chromosome:C_jacchus3.2.1:16:1:96796970:1	51804536	51814541	R	glycosylphosphatidylinositol anchored molecule like [Source:HGNC Symbol;Acc:HGNC:4375]
ENSCJAG00000020428	NOVEL	pseudogene	ENSCJAG00000020428	chromosome:C_jacchus3.2.1:10:1:132174527:1	1025160	1025671	R	<no descrition>
ENSCJAG00000020424	KNOWN	protein_coding	FAM63B	chromosome:C_jacchus3.2.1:10:1:132174527:1	971525	1063201	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037956}  [Source:UniProtKB/TrEMBL;Acc:F6UP36]
ENSCJAG00000021032	NOVEL	protein_coding	ENSCJAG00000021032	chromosome:C_jacchus3.2.1:9:1:124281992:1	38502534	38512418	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039147}  [Source:UniProtKB/TrEMBL;Acc:F7H5E6]
ENSCJAG00000021462	NOVEL	protein_coding	ENSCJAG00000021462	chromosome:C_jacchus3.2.1:16:1:96796970:1	51748789	51783323	D	<no descrition>
ENSCJAG00000035177	NOVEL	protein_coding	ENSCJAG00000035177	chromosome:C_jacchus3.2.1:16:1:96796970:1	51726715	51728669	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042133}  [Source:UniProtKB/TrEMBL;Acc:F6V970]
ENSCJAG00000021460	KNOWN_BY_PROJECTION	protein_coding	LY6E	chromosome:C_jacchus3.2.1:16:1:96796970:1	51609445	51610359	R	lymphocyte antigen 6 complex, locus E [Source:HGNC Symbol;Acc:HGNC:6727]
ENSCJAG00000021456	NOVEL	pseudogene	ENSCJAG00000021456	chromosome:C_jacchus3.2.1:16:1:96796970:1	51539963	51540560	D	<no descrition>
ENSCJAG00000035007	NOVEL	protein_coding	ENSCJAG00000035007	chromosome:C_jacchus3.2.1:16:1:96796970:1	51559992	51561641	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044995}  [Source:UniProtKB/TrEMBL;Acc:F7FV44]
ENSCJAG00000021453	KNOWN_BY_PROJECTION	protein_coding	LY6H	chromosome:C_jacchus3.2.1:16:1:96796970:1	51489673	51491991	D	lymphocyte antigen 6 complex, locus H [Source:HGNC Symbol;Acc:HGNC:6728]
ENSCJAG00000021449	KNOWN_BY_PROJECTION	protein_coding	GLI4	chromosome:C_jacchus3.2.1:16:1:96796970:1	51385130	51394548	R	GLI family zinc finger 4 [Source:HGNC Symbol;Acc:HGNC:4320]
ENSCJAG00000009544	KNOWN_BY_PROJECTION	protein_coding	UMOD	chromosome:C_jacchus3.2.1:12:1:121768101:1	19917641	19961869	R	uromodulin [Source:HGNC Symbol;Acc:HGNC:12559]
ENSCJAG00000021385	KNOWN	protein_coding	PRPF4B	chromosome:C_jacchus3.2.1:4:1:171630274:1	24710063	24752829	R	Serine/threonine-protein kinase PRP4 homolog {ECO:0000313|EMBL:JAB07733.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039803}  [Source:UniProtKB/TrEMBL;Acc:F7GNQ7]
ENSCJAG00000021428	KNOWN_BY_PROJECTION	protein_coding	MROH6	chromosome:C_jacchus3.2.1:16:1:96796970:1	51092037	51097377	D	maestro heat-like repeat family member 6 [Source:HGNC Symbol;Acc:HGNC:27814]
ENSCJAG00000009595	KNOWN_BY_PROJECTION	protein_coding	GPR139	chromosome:C_jacchus3.2.1:12:1:121768101:1	19643221	19686500	R	G protein-coupled receptor 139 [Source:HGNC Symbol;Acc:HGNC:19995]
ENSCJAG00000009607	KNOWN	protein_coding	GPRC5B	chromosome:C_jacchus3.2.1:12:1:121768101:1	19466335	19481935	R	G-protein coupled receptor family C group 5 member B {ECO:0000313|EMBL:JAB05026.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017599}  [Source:UniProtKB/TrEMBL;Acc:F7I7L4]
ENSCJAG00000021419	KNOWN	protein_coding	EEF1D	chromosome:C_jacchus3.2.1:16:1:96796970:1	51065291	51084838	D	Elongation factor 1-delta isoform 1 {ECO:0000313|EMBL:JAB44568.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039862}  [Source:UniProtKB/TrEMBL;Acc:F7FRK1]
ENSCJAG00000009625	KNOWN	protein_coding	ENSCJAG00000009625	chromosome:C_jacchus3.2.1:12:1:121768101:1	19295211	19303209	R	Protein C16orf88 {ECO:0000313|EMBL:JAB08542.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017637}  [Source:UniProtKB/TrEMBL;Acc:F7HY78]
ENSCJAG00000021382	KNOWN_BY_PROJECTION	protein_coding	FAM217A	chromosome:C_jacchus3.2.1:4:1:171630274:1	24688103	24706236	D	family with sequence similarity 217, member A [Source:HGNC Symbol;Acc:HGNC:21362]
ENSCJAG00000021417	KNOWN_BY_PROJECTION	protein_coding	TIGD5	chromosome:C_jacchus3.2.1:16:1:96796970:1	51063669	51250567	R	tigger transposable element derived 5 [Source:HGNC Symbol;Acc:HGNC:18336]
ENSCJAG00000001745	KNOWN_BY_PROJECTION	protein_coding	PCNT	chromosome:C_jacchus3.2.1:21:1:50472720:1	50112648	50232405	D	pericentrin [Source:HGNC Symbol;Acc:HGNC:16068]
ENSCJAG00000017148	KNOWN	protein_coding	POC5	chromosome:C_jacchus3.2.1:2:1:204313951:1	132667944	132713311	D	Centrosomal protein POC5 isoform 1 {ECO:0000313|EMBL:JAB14472.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031563}  [Source:UniProtKB/TrEMBL;Acc:F7HLM8]
ENSCJAG00000001809	KNOWN_BY_PROJECTION	protein_coding	C21orf58	chromosome:C_jacchus3.2.1:21:1:50472720:1	50084394	50096920	R	chromosome 21 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:1300]
ENSCJAG00000021409	KNOWN	protein_coding	TSTA3	chromosome:C_jacchus3.2.1:16:1:96796970:1	51044415	51049202	D	GDP-L-fucose synthase {ECO:0000313|EMBL:JAB09849.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050747}  [Source:UniProtKB/TrEMBL;Acc:F7D7Q1]
ENSCJAG00000001815	KNOWN_BY_PROJECTION	protein_coding	YBEY	chromosome:C_jacchus3.2.1:21:1:50472720:1	50061380	50071240	D	ybeY metallopeptidase (putative) [Source:HGNC Symbol;Acc:HGNC:1299]
ENSCJAG00000020046	NOVEL	protein_coding	ENSCJAG00000020046	chromosome:C_jacchus3.2.1:2:1:204313951:1	132255258	132256723	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037277}  [Source:UniProtKB/TrEMBL;Acc:F6UWX8]
ENSCJAG00000021494	KNOWN	protein_coding	ZNF623	chromosome:C_jacchus3.2.1:16:1:96796970:1	51013412	51033850	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040016}; Zinc finger protein 623 isoform 1 {ECO:0000313|EMBL:JAB04375.1}  [Source:UniProtKB/TrEMBL;Acc:F7ILN2]
ENSCJAG00000020430	KNOWN_BY_PROJECTION	protein_coding	ADAM10	chromosome:C_jacchus3.2.1:10:1:132174527:1	788500	914599	R	ADAM metallopeptidase domain 10 [Source:HGNC Symbol;Acc:HGNC:188]
ENSCJAG00000021422	KNOWN_BY_PROJECTION	protein_coding	NAPRT	chromosome:C_jacchus3.2.1:16:1:96796970:1	50958967	51089423	D	nicotinate phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:30450]
ENSCJAG00000020441	KNOWN_BY_PROJECTION	protein_coding	LIPC	chromosome:C_jacchus3.2.1:10:1:132174527:1	725973	760079	D	lipase, hepatic [Source:HGNC Symbol;Acc:HGNC:6619]
ENSCJAG00000031670	KNOWN_BY_PROJECTION	protein_coding	MAPK15	chromosome:C_jacchus3.2.1:16:1:96796970:1	50945012	50947880	R	mitogen-activated protein kinase 15 [Source:HGNC Symbol;Acc:HGNC:24667]
ENSCJAG00000001770	KNOWN_BY_PROJECTION	protein_coding	MCM3AP	chromosome:C_jacchus3.2.1:21:1:50472720:1	49999197	50059667	R	minichromosome maintenance complex component 3 associated protein [Source:HGNC Symbol;Acc:HGNC:6946]
ENSCJAG00000021492	KNOWN_BY_PROJECTION	protein_coding	FAM83H	chromosome:C_jacchus3.2.1:16:1:96796970:1	50936493	50941450	D	family with sequence similarity 83, member H [Source:HGNC Symbol;Acc:HGNC:24797]
ENSCJAG00000021489	NOVEL	protein_coding	ENSCJAG00000021489	chromosome:C_jacchus3.2.1:16:1:96796970:1	50891777	50892684	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040012}  [Source:UniProtKB/TrEMBL;Acc:F7ILN5]
ENSCJAG00000020031	KNOWN_BY_PROJECTION	protein_coding	SV2C	chromosome:C_jacchus3.2.1:2:1:204313951:1	131986687	132272719	R	synaptic vesicle glycoprotein 2C [Source:HGNC Symbol;Acc:HGNC:30670]
ENSCJAG00000020029	KNOWN_BY_PROJECTION	protein_coding	F2RL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	131723024	131728861	D	coagulation factor II (thrombin) receptor-like 2 [Source:HGNC Symbol;Acc:HGNC:3539]
ENSCJAG00000021488	NOVEL	protein_coding	ENSCJAG00000021488	chromosome:C_jacchus3.2.1:16:1:96796970:1	50872416	50898764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040011}  [Source:UniProtKB/TrEMBL;Acc:F7ILN6]
ENSCJAG00000021467	KNOWN_BY_PROJECTION	protein_coding	SCRIB	chromosome:C_jacchus3.2.1:16:1:96796970:1	50850403	50871861	D	scribbled planar cell polarity protein [Source:HGNC Symbol;Acc:HGNC:30377]
ENSCJAG00000007928	KNOWN_BY_PROJECTION	protein_coding	AQP9	chromosome:C_jacchus3.2.1:10:1:132174527:1	275938	322202	D	aquaporin 9 [Source:HGNC Symbol;Acc:HGNC:643]
ENSCJAG00000001856	KNOWN_BY_PROJECTION	protein_coding	FTCD	chromosome:C_jacchus3.2.1:21:1:50472720:1	49908046	49926320	R	formimidoyltransferase cyclodeaminase [Source:HGNC Symbol;Acc:HGNC:3974]
ENSCJAG00000001824	KNOWN_BY_PROJECTION	protein_coding	LSS	chromosome:C_jacchus3.2.1:21:1:50472720:1	49884761	49986825	R	lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) [Source:HGNC Symbol;Acc:HGNC:6708]
ENSCJAG00000001877	KNOWN_BY_PROJECTION	protein_coding	COL6A1	chromosome:C_jacchus3.2.1:21:1:50472720:1	49749181	49771243	D	collagen, type VI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2211]
ENSCJAG00000001492	KNOWN_BY_PROJECTION	protein_coding	RXFP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	33505187	33698918	R	relaxin/insulin-like family peptide receptor 1 [Source:HGNC Symbol;Acc:HGNC:19718]
ENSCJAG00000001863	KNOWN_BY_PROJECTION	protein_coding	COL6A2	chromosome:C_jacchus3.2.1:21:1:50472720:1	49720671	49906092	D	collagen, type VI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2212]
ENSCJAG00000035587	KNOWN_BY_PROJECTION	protein_coding	EPPK1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50792984	50799343	D	epiplakin 1 [Source:HGNC Symbol;Acc:HGNC:15577]
ENSCJAG00000021377	KNOWN	protein_coding	ECI2	chromosome:C_jacchus3.2.1:4:1:171630274:1	24615049	24638833	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039781}  [Source:UniProtKB/TrEMBL;Acc:F7H9M7]
ENSCJAG00000018631	NOVEL	protein_coding	ENSCJAG00000018631	chromosome:C_jacchus3.2.1:21:1:50472720:1	49104579	49107980	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034607}  [Source:UniProtKB/TrEMBL;Acc:F7HWM3]
ENSCJAG00000034531	KNOWN_BY_PROJECTION	protein_coding	PARP10	chromosome:C_jacchus3.2.1:16:1:96796970:1	50661773	50677876	D	poly (ADP-ribose) polymerase family, member 10 [Source:HGNC Symbol;Acc:HGNC:25895]
ENSCJAG00000018646	KNOWN	protein_coding	ADARB1	chromosome:C_jacchus3.2.1:21:1:50472720:1	48893317	49037313	D	Double-stranded RNA-specific editase 1 isoform 1 {ECO:0000313|EMBL:JAB22376.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034647}  [Source:UniProtKB/TrEMBL;Acc:F7IS82]
ENSCJAG00000020976	NOVEL	pseudogene	ENSCJAG00000020976	chromosome:C_jacchus3.2.1:9:1:124281992:1	38338996	38339417	R	<no descrition>
ENSCJAG00000019982	KNOWN	protein_coding	F2RL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	131489995	131506043	R	Proteinase-activated receptor 2 {ECO:0000313|EMBL:JAB02045.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037162}  [Source:UniProtKB/TrEMBL;Acc:F7B1G3]
ENSCJAG00000010507	KNOWN_BY_PROJECTION	protein_coding	UBE2G2	chromosome:C_jacchus3.2.1:21:1:50472720:1	48577355	48613027	R	ubiquitin-conjugating enzyme E2G 2 [Source:HGNC Symbol;Acc:HGNC:12483]
ENSCJAG00000009632	KNOWN_BY_PROJECTION	protein_coding	C16orf62	chromosome:C_jacchus3.2.1:12:1:121768101:1	19133629	19292406	D	chromosome 16 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:24641]
ENSCJAG00000021455	KNOWN	protein_coding	GPAA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50571748	50575216	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039933}  [Source:UniProtKB/TrEMBL;Acc:F7HJR7]
ENSCJAG00000000309	NOVEL	protein_coding	ENSCJAG00000000309	chromosome:C_jacchus3.2.1:21:1:50472720:1	48475005	48488482	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000524}  [Source:UniProtKB/TrEMBL;Acc:F7H865]
ENSCJAG00000000301	KNOWN_BY_PROJECTION	protein_coding	KRTAP10-4	chromosome:C_jacchus3.2.1:21:1:50472720:1	48397571	48519517	D	keratin associated protein 10-4 [Source:HGNC Symbol;Acc:HGNC:20521]
ENSCJAG00000021452	KNOWN	protein_coding	SHARPIN	chromosome:C_jacchus3.2.1:16:1:96796970:1	50554522	50560122	D	Sharpin {ECO:0000313|EMBL:JAB07682.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039928}  [Source:UniProtKB/TrEMBL;Acc:F7DAG5]
ENSCJAG00000021374	KNOWN	protein_coding	CDYL	chromosome:C_jacchus3.2.1:4:1:171630274:1	23731885	24005547	R	Chromodomain Y-like protein isoform a {ECO:0000313|EMBL:JAB11441.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039779}  [Source:UniProtKB/TrEMBL;Acc:F7H9M9]
ENSCJAG00000034167	NOVEL	protein_coding	ENSCJAG00000034167	chromosome:C_jacchus3.2.1:2:1:204313951:1	131371881	131372966	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045616}  [Source:UniProtKB/TrEMBL;Acc:F6QZG2]
ENSCJAG00000021372	NOVEL	protein_coding	ENSCJAG00000021372	chromosome:C_jacchus3.2.1:4:1:171630274:1	23619961	23620936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052229}  [Source:UniProtKB/TrEMBL;Acc:F7ILG2]
ENSCJAG00000001451	KNOWN	protein_coding	ETFDH	chromosome:C_jacchus3.2.1:3:1:190850796:1	33456518	33493076	R	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial {ECO:0000313|EMBL:JAB04092.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002644}  [Source:UniProtKB/TrEMBL;Acc:F7I4G1]
ENSCJAG00000019955	KNOWN_BY_PROJECTION	protein_coding	AGGF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	131316120	131347408	R	angiogenic factor with G patch and FHA domains 1 [Source:HGNC Symbol;Acc:HGNC:24684]
ENSCJAG00000019950	KNOWN	protein_coding	ZBED3	chromosome:C_jacchus3.2.1:2:1:204313951:1	131292775	131302787	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037110}; Zinc finger BED domain-containing protein 3 {ECO:0000313|EMBL:JAB13108.1}  [Source:UniProtKB/TrEMBL;Acc:F6UC78]
ENSCJAG00000017611	KNOWN_BY_PROJECTION	protein_coding	C21orf2	chromosome:C_jacchus3.2.1:21:1:50472720:1	48159943	48171166	R	chromosome 21 open reading frame 2 [Source:HGNC Symbol;Acc:HGNC:1260]
ENSCJAG00000021367	KNOWN	protein_coding	NRN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	22638201	22648006	D	Neuritin {ECO:0000313|EMBL:JAB14427.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039767}  [Source:UniProtKB/TrEMBL;Acc:F7HEM3]
ENSCJAG00000021365	NOVEL	protein_coding	ENSCJAG00000021365	chromosome:C_jacchus3.2.1:4:1:171630274:1	22105157	22106127	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039763}  [Source:UniProtKB/TrEMBL;Acc:F7HEN0]
ENSCJAG00000021366	KNOWN_BY_PROJECTION	protein_coding	F13A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	22325167	22491353	D	coagulation factor XIII, A1 polypeptide [Source:HGNC Symbol;Acc:HGNC:3531]
ENSCJAG00000020935	KNOWN	protein_coding	MCRS1	chromosome:C_jacchus3.2.1:9:1:124281992:1	38327481	38337000	R	Microspherule protein 1 isoform 1 {ECO:0000313|EMBL:JAB09124.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039018}  [Source:UniProtKB/TrEMBL;Acc:F7FFY9]
ENSCJAG00000021358	KNOWN_BY_PROJECTION	protein_coding	RREB1	chromosome:C_jacchus3.2.1:4:1:171630274:1	21361182	21511730	R	ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
ENSCJAG00000021437	KNOWN_BY_PROJECTION	protein_coding	BOP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50355950	50388133	D	block of proliferation 1 [Source:HGNC Symbol;Acc:HGNC:15519]
ENSCJAG00000013748	KNOWN_BY_PROJECTION	protein_coding	AIRE	chromosome:C_jacchus3.2.1:21:1:50472720:1	48107109	48116133	D	autoimmune regulator [Source:HGNC Symbol;Acc:HGNC:360]
ENSCJAG00000021431	KNOWN_BY_PROJECTION	protein_coding	HSF1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50338112	50355389	R	heat shock transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:5224]
ENSCJAG00000003576	NOVEL	protein_coding	ENSCJAG00000003576	chromosome:C_jacchus3.2.1:21:1:50472720:1	48043635	48052717	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006492}  [Source:UniProtKB/TrEMBL;Acc:F7GJ54]
ENSCJAG00000021429	KNOWN_BY_PROJECTION	protein_coding	TMEM249	chromosome:C_jacchus3.2.1:16:1:96796970:1	50296607	50298086	D	transmembrane protein 249 [Source:HGNC Symbol;Acc:HGNC:44155]
ENSCJAG00000005560	KNOWN	protein_coding	C21H21ORF33	chromosome:C_jacchus3.2.1:21:1:50472720:1	47959118	47972041	D	ES1 protein homolog, mitochondrial isoform Ia {ECO:0000313|EMBL:JAB32440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010153}  [Source:UniProtKB/TrEMBL;Acc:F6YAZ6]
ENSCJAG00000005624	NOVEL	pseudogene	ENSCJAG00000005624	chromosome:C_jacchus3.2.1:21:1:50472720:1	47875054	47875574	R	<no descrition>
ENSCJAG00000019876	KNOWN_BY_PROJECTION	protein_coding	PDE8B	chromosome:C_jacchus3.2.1:2:1:204313951:1	130938477	131156692	R	phosphodiesterase 8B [Source:HGNC Symbol;Acc:HGNC:8794]
ENSCJAG00000021416	KNOWN_BY_PROJECTION	protein_coding	VPS28	chromosome:C_jacchus3.2.1:16:1:96796970:1	50220882	50224393	D	vacuolar protein sorting 28 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18178]
ENSCJAG00000020923	KNOWN	protein_coding	KCNH3	chromosome:C_jacchus3.2.1:9:1:124281992:1	38306537	38327390	D	Potassium voltage-gated channel subfamily H member 3 {ECO:0000313|EMBL:JAB16617.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038945}  [Source:UniProtKB/TrEMBL;Acc:F7IQF7]
ENSCJAG00000033353	KNOWN_BY_PROJECTION	protein_coding	AGPAT3	chromosome:C_jacchus3.2.1:21:1:50472720:1	47782242	47798081	D	1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
ENSCJAG00000021412	KNOWN_BY_PROJECTION	protein_coding	ADCK5	chromosome:C_jacchus3.2.1:16:1:96796970:1	50213389	50269200	R	aarF domain containing kinase 5 [Source:HGNC Symbol;Acc:HGNC:21738]
ENSCJAG00000009906	KNOWN	protein_coding	SYT17	chromosome:C_jacchus3.2.1:12:1:121768101:1	18779214	18879147	D	Synaptotagmin-17 {ECO:0000313|EMBL:JAB19378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018170}  [Source:UniProtKB/TrEMBL;Acc:F7HH86]
ENSCJAG00000020920	KNOWN_BY_PROJECTION	protein_coding	SPATS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	38139446	38293040	D	spermatogenesis associated, serine-rich 2 [Source:HGNC Symbol;Acc:HGNC:18650]
ENSCJAG00000021410	KNOWN	protein_coding	CYHR1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50179898	50194203	D	Cysteine and histidine-rich protein 1 isoform 2 {ECO:0000313|EMBL:JAB05897.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049131}  [Source:UniProtKB/TrEMBL;Acc:F7B248]
ENSCJAG00000015843	NOVEL	protein_coding	ENSCJAG00000015843	chromosome:C_jacchus3.2.1:21:1:50472720:1	46966462	46981576	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029213}  [Source:UniProtKB/TrEMBL;Acc:F7HYG4]
ENSCJAG00000001355	KNOWN	protein_coding	RAPGEF2	chromosome:C_jacchus3.2.1:3:1:190850796:1	32774932	32867038	R	Rap guanine nucleotide exchange factor 2 {ECO:0000313|EMBL:JAB14476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002475}  [Source:UniProtKB/TrEMBL;Acc:F7HXJ2]
ENSCJAG00000021408	KNOWN	protein_coding	DGAT1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50179513	50336275	D	O-acyltransferase {ECO:0000256|PIRNR:PIRNR000439}  [Source:UniProtKB/TrEMBL;Acc:F7BFP5]
ENSCJAG00000020002	KNOWN_BY_PROJECTION	protein_coding	TMC7	chromosome:C_jacchus3.2.1:12:1:121768101:1	18592844	18666130	D	transmembrane channel-like 7 [Source:HGNC Symbol;Acc:HGNC:23000]
ENSCJAG00000021354	KNOWN	protein_coding	SSR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	21299136	21325667	D	Translocon-associated protein subunit alpha {ECO:0000313|EMBL:JAB03790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039748}  [Source:UniProtKB/TrEMBL;Acc:F7HEV2]
ENSCJAG00000037776	NOVEL	protein_coding	ENSCJAG00000037776	chromosome:C_jacchus3.2.1:12:1:121768101:1	18592754	18632414	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042717}  [Source:UniProtKB/TrEMBL;Acc:F6WTR9]
ENSCJAG00000012371	KNOWN_BY_PROJECTION	protein_coding	FSTL5	chromosome:C_jacchus3.2.1:3:1:190850796:1	29734417	30587170	D	follistatin-like 5 [Source:HGNC Symbol;Acc:HGNC:21386]
ENSCJAG00000021392	KNOWN_BY_PROJECTION	protein_coding	KIFC2	chromosome:C_jacchus3.2.1:16:1:96796970:1	50168780	50178797	R	kinesin family member C2 [Source:HGNC Symbol;Acc:HGNC:29530]
ENSCJAG00000021351	KNOWN_BY_PROJECTION	protein_coding	CAGE1	chromosome:C_jacchus3.2.1:4:1:171630274:1	21230216	21290255	D	cancer antigen 1 [Source:HGNC Symbol;Acc:HGNC:21622]
ENSCJAG00000021407	KNOWN_BY_PROJECTION	protein_coding	FOXH1	chromosome:C_jacchus3.2.1:16:1:96796970:1	50166504	50169166	D	forkhead box H1 [Source:HGNC Symbol;Acc:HGNC:3814]
ENSCJAG00000020904	KNOWN_BY_PROJECTION	protein_coding	PRPH	chromosome:C_jacchus3.2.1:9:1:124281992:1	38071110	38074197	D	peripherin [Source:HGNC Symbol;Acc:HGNC:9461]
ENSCJAG00000021405	KNOWN_BY_PROJECTION	protein_coding	PPP1R16A	chromosome:C_jacchus3.2.1:16:1:96796970:1	50139761	50145104	R	protein phosphatase 1, regulatory subunit 16A [Source:HGNC Symbol;Acc:HGNC:14941]
ENSCJAG00000020874	KNOWN_BY_PROJECTION	protein_coding	TUBA1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	37909116	37913542	R	tubulin, alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
ENSCJAG00000015777	NOVEL	pseudogene	ENSCJAG00000015777	chromosome:C_jacchus3.2.1:21:1:50472720:1	46660335	46660914	D	<no descrition>
ENSCJAG00000019853	KNOWN	protein_coding	WDR41	chromosome:C_jacchus3.2.1:2:1:204313951:1	130873990	130933564	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046283}; WD repeat-containing protein 41 {ECO:0000313|EMBL:JAB05467.1}  [Source:UniProtKB/TrEMBL;Acc:F7ASQ5]
ENSCJAG00000021404	KNOWN_BY_PROJECTION	protein_coding	GPT	chromosome:C_jacchus3.2.1:16:1:96796970:1	50134013	50138761	R	glutamic-pyruvate transaminase (alanine aminotransferase) [Source:HGNC Symbol;Acc:HGNC:4552]
ENSCJAG00000012433	KNOWN	protein_coding	NPY1R	chromosome:C_jacchus3.2.1:3:1:190850796:1	28395990	28404424	D	Neuropeptide Y receptor type 1 {ECO:0000313|EMBL:JAB05614.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022770}  [Source:UniProtKB/TrEMBL;Acc:F7I8A1]
ENSCJAG00000015729	KNOWN_BY_PROJECTION	protein_coding	PDE9A	chromosome:C_jacchus3.2.1:21:1:50472720:1	46611820	46698204	D	phosphodiesterase 9A [Source:HGNC Symbol;Acc:HGNC:8795]
ENSCJAG00000021402	KNOWN	protein_coding	MFSD3	chromosome:C_jacchus3.2.1:16:1:96796970:1	50130007	50132103	R	Major facilitator superfamily domain-containing protein 3 {ECO:0000313|EMBL:JAB04332.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039831}  [Source:UniProtKB/TrEMBL;Acc:F7G427]
ENSCJAG00000012463	NOVEL	pseudogene	ENSCJAG00000012463	chromosome:C_jacchus3.2.1:3:1:190850796:1	28243605	28246391	D	<no descrition>
ENSCJAG00000019850	KNOWN_BY_PROJECTION	protein_coding	OTP	chromosome:C_jacchus3.2.1:2:1:204313951:1	130702565	130710185	D	orthopedia homeobox [Source:HGNC Symbol;Acc:HGNC:8518]
ENSCJAG00000012470	KNOWN	protein_coding	TMA16	chromosome:C_jacchus3.2.1:3:1:190850796:1	28183735	28222566	R	Translation machinery-associated protein 16 {ECO:0000313|EMBL:JAB01822.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022835}  [Source:UniProtKB/TrEMBL;Acc:F7HTJ4]
ENSCJAG00000012479	KNOWN	protein_coding	MARCH1	chromosome:C_jacchus3.2.1:3:1:190850796:1	27859489	28176258	D	E3 ubiquitin-protein ligase MARCH1 isoform 1 {ECO:0000313|EMBL:JAB20664.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022852}  [Source:UniProtKB/TrEMBL;Acc:F7HMR0]
ENSCJAG00000021399	KNOWN	protein_coding	LRRC14	chromosome:C_jacchus3.2.1:16:1:96796970:1	50118405	50122436	R	Leucine-rich repeat-containing protein 14 {ECO:0000313|EMBL:JAB07031.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042594}  [Source:UniProtKB/TrEMBL;Acc:F6UHL6]
ENSCJAG00000012493	NOVEL	pseudogene	ENSCJAG00000012493	chromosome:C_jacchus3.2.1:3:1:190850796:1	26625688	26627369	R	<no descrition>
ENSCJAG00000006363	NOVEL	protein_coding	ENSCJAG00000006363	chromosome:C_jacchus3.2.1:3:1:190850796:1	26516613	26517984	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011722}  [Source:UniProtKB/TrEMBL;Acc:F7GM28]
ENSCJAG00000021397	KNOWN_BY_PROJECTION	protein_coding	LRRC24	chromosome:C_jacchus3.2.1:16:1:96796970:1	50114950	50117945	D	leucine rich repeat containing 24 [Source:HGNC Symbol;Acc:HGNC:28947]
ENSCJAG00000021958	KNOWN_BY_PROJECTION	protein_coding	TRIM60	chromosome:C_jacchus3.2.1:3:1:190850796:1	26420662	26422534	R	tripartite motif containing 60 [Source:HGNC Symbol;Acc:HGNC:21162]
ENSCJAG00000021395	KNOWN	protein_coding	ARHGAP39	chromosome:C_jacchus3.2.1:16:1:96796970:1	50044453	50109166	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039816}  [Source:UniProtKB/TrEMBL;Acc:F7GG49]
ENSCJAG00000034497	NOVEL	protein_coding	ENSCJAG00000034497	chromosome:C_jacchus3.2.1:3:1:190850796:1	26443061	26445230	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052086}  [Source:UniProtKB/TrEMBL;Acc:F7IEM6]
ENSCJAG00000007403	KNOWN_BY_PROJECTION	protein_coding	UBASH3A	chromosome:C_jacchus3.2.1:21:1:50472720:1	46331652	46380223	D	ubiquitin associated and SH3 domain containing A [Source:HGNC Symbol;Acc:HGNC:12462]
ENSCJAG00000036389	KNOWN_BY_PROJECTION	protein_coding	ZNF34	chromosome:C_jacchus3.2.1:16:1:96796970:1	49835610	49841157	D	zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
ENSCJAG00000021333	KNOWN	protein_coding	DSP	chromosome:C_jacchus3.2.1:4:1:171630274:1	21037517	21229923	R	Serine/threonine-protein kinase RIO1 {ECO:0000256|PIRNR:PIRNR038147}  [Source:UniProtKB/TrEMBL;Acc:F7DBN3]
ENSCJAG00000021387	KNOWN	protein_coding	ZNF517	chromosome:C_jacchus3.2.1:16:1:96796970:1	49805913	49809626	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039798}  [Source:UniProtKB/TrEMBL;Acc:F7H9J5]
ENSCJAG00000007372	KNOWN	protein_coding	TMPRSS3	chromosome:C_jacchus3.2.1:21:1:50472720:1	46289897	46318321	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013763}  [Source:UniProtKB/TrEMBL;Acc:F6WH39]
ENSCJAG00000020863	KNOWN	protein_coding	LMBR1L	chromosome:C_jacchus3.2.1:9:1:124281992:1	37875675	37888571	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038832}  [Source:UniProtKB/TrEMBL;Acc:F7I499]
ENSCJAG00000021383	KNOWN_BY_PROJECTION	protein_coding	COMMD5	chromosome:C_jacchus3.2.1:16:1:96796970:1	49765325	49768577	D	COMM domain containing 5 [Source:HGNC Symbol;Acc:HGNC:17902]
ENSCJAG00000007362	KNOWN_BY_PROJECTION	protein_coding	TFF3	chromosome:C_jacchus3.2.1:21:1:50472720:1	46228448	46232249	R	trefoil factor 3 (intestinal) [Source:HGNC Symbol;Acc:HGNC:11757]
ENSCJAG00000007350	NOVEL	protein_coding	ENSCJAG00000007350	chromosome:C_jacchus3.2.1:21:1:50472720:1	46157638	46212491	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013694}  [Source:UniProtKB/TrEMBL;Acc:F7ADY4]
ENSCJAG00000021379	KNOWN	protein_coding	ZNF16	chromosome:C_jacchus3.2.1:16:1:96796970:1	49656515	49695788	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045669}; Zinc finger protein 16 {ECO:0000313|EMBL:JAB05102.1}  [Source:UniProtKB/TrEMBL;Acc:F6Q1S4]
ENSCJAG00000021328	NOVEL	pseudogene	ENSCJAG00000021328	chromosome:C_jacchus3.2.1:4:1:171630274:1	20883911	20884230	D	<no descrition>
ENSCJAG00000033567	NOVEL	protein_coding	ENSCJAG00000033567	chromosome:C_jacchus3.2.1:16:1:96796970:1	48943730	48944671	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046876}  [Source:UniProtKB/TrEMBL;Acc:F7IK19]
ENSCJAG00000020579	KNOWN_BY_PROJECTION	protein_coding	CPQ	chromosome:C_jacchus3.2.1:16:1:96796970:1	48531500	48907844	D	carboxypeptidase Q [Source:HGNC Symbol;Acc:HGNC:16910]
ENSCJAG00000020570	KNOWN	protein_coding	SDC2	chromosome:C_jacchus3.2.1:16:1:96796970:1	48308438	48423195	D	Syndecan {ECO:0000256|RuleBase:RU000649}  [Source:UniProtKB/TrEMBL;Acc:F7IT99]
ENSCJAG00000011251	KNOWN_BY_PROJECTION	protein_coding	RIPK4	chromosome:C_jacchus3.2.1:21:1:50472720:1	45667004	45697105	R	receptor-interacting serine-threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:496]
ENSCJAG00000019804	KNOWN_BY_PROJECTION	protein_coding	AP3B1	chromosome:C_jacchus3.2.1:2:1:204313951:1	130038038	130334718	D	adaptor-related protein complex 3, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:566]
ENSCJAG00000019803	NOVEL	protein_coding	ENSCJAG00000019803	chromosome:C_jacchus3.2.1:2:1:204313951:1	129903135	129904133	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036816}  [Source:UniProtKB/TrEMBL;Acc:F6TWZ1]
ENSCJAG00000011261	KNOWN_BY_PROJECTION	protein_coding	MX1	chromosome:C_jacchus3.2.1:21:1:50472720:1	45392481	45417190	D	MX dynamin-like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]
ENSCJAG00000021326	KNOWN_BY_PROJECTION	protein_coding	BMP6	chromosome:C_jacchus3.2.1:4:1:171630274:1	20614560	20779409	R	bone morphogenetic protein 6 [Source:HGNC Symbol;Acc:HGNC:1073]
ENSCJAG00000020561	KNOWN	protein_coding	MTERFD1	chromosome:C_jacchus3.2.1:16:1:96796970:1	48049379	48077087	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038204}; mTERF domain-containing protein 1, mitochondrial {ECO:0000313|EMBL:JAB15188.1}  [Source:UniProtKB/TrEMBL;Acc:F7HQF9]
ENSCJAG00000020560	KNOWN	protein_coding	UQCRB	chromosome:C_jacchus3.2.1:16:1:96796970:1	48040230	48045256	R	Cytochrome b-c1 complex subunit 7 {ECO:0000256|PIRNR:PIRNR000022}  [Source:UniProtKB/TrEMBL;Acc:F7HQH0]
ENSCJAG00000021325	NOVEL	protein_coding	ENSCJAG00000021325	chromosome:C_jacchus3.2.1:4:1:171630274:1	20522645	20526461	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039695}  [Source:UniProtKB/TrEMBL;Acc:F7FSD3]
ENSCJAG00000011303	KNOWN_BY_PROJECTION	protein_coding	MX2	chromosome:C_jacchus3.2.1:21:1:50472720:1	45323393	45366769	D	MX dynamin-like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:7533]
ENSCJAG00000020555	KNOWN	protein_coding	C8ORF37	chromosome:C_jacchus3.2.1:16:1:96796970:1	46923478	47083537	R	Protein C8orf37 {ECO:0000313|EMBL:JAB15171.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038192}  [Source:UniProtKB/TrEMBL;Acc:F7I023]
ENSCJAG00000011329	KNOWN_BY_PROJECTION	protein_coding	FAM3B	chromosome:C_jacchus3.2.1:21:1:50472720:1	45279966	45293533	D	family with sequence similarity 3, member B [Source:HGNC Symbol;Acc:HGNC:1253]
ENSCJAG00000011344	KNOWN_BY_PROJECTION	protein_coding	BACE2	chromosome:C_jacchus3.2.1:21:1:50472720:1	45076082	45166267	D	beta-site APP-cleaving enzyme 2 [Source:HGNC Symbol;Acc:HGNC:934]
ENSCJAG00000019793	KNOWN_BY_PROJECTION	protein_coding	LHFPL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	129784113	129803096	D	lipoma HMGIC fusion partner-like 2 [Source:HGNC Symbol;Acc:HGNC:6588]
ENSCJAG00000021322	KNOWN	protein_coding	TXNDC5	chromosome:C_jacchus3.2.1:4:1:171630274:1	20395131	20614927	D	Biogenesis of lysosome-related organelles complex 1 subunit 5 {ECO:0000256|PIRNR:PIRNR037610}  [Source:UniProtKB/TrEMBL;Acc:F7FSD5]
ENSCJAG00000000011	KNOWN_BY_PROJECTION	protein_coding	CCNE2	chromosome:C_jacchus3.2.1:16:1:96796970:1	46676062	46688513	R	cyclin E2 [Source:HGNC Symbol;Acc:HGNC:1590]
ENSCJAG00000005655	KNOWN_BY_PROJECTION	protein_coding	IGSF5	chromosome:C_jacchus3.2.1:21:1:50472720:1	43695685	43735192	D	immunoglobulin superfamily, member 5 [Source:HGNC Symbol;Acc:HGNC:5952]
ENSCJAG00000005667	KNOWN	protein_coding	B3GALT5	chromosome:C_jacchus3.2.1:21:1:50472720:1	43558418	43605541	D	Beta-1,3-galactosyltransferase 5 {ECO:0000313|EMBL:JAB18401.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010379}  [Source:UniProtKB/TrEMBL;Acc:F6YSH3]
ENSCJAG00000019786	KNOWN_BY_PROJECTION	protein_coding	ARSB	chromosome:C_jacchus3.2.1:2:1:204313951:1	129289910	129515249	D	arylsulfatase B [Source:HGNC Symbol;Acc:HGNC:714]
ENSCJAG00000021321	KNOWN	protein_coding	ENSCJAG00000021321	chromosome:C_jacchus3.2.1:4:1:171630274:1	20361725	20383475	D	Eukaryotic translation elongation factor 1 epsilon-1 isoform 1 {ECO:0000313|EMBL:JAB12176.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039687}  [Source:UniProtKB/TrEMBL;Acc:F7FSI4]
ENSCJAG00000005693	NOVEL	protein_coding	LCA5L	chromosome:C_jacchus3.2.1:21:1:50472720:1	43347245	43572981	R	Leber congenital amaurosis 5-like (Predicted) {ECO:0000313|EMBL:ABY79113.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043592}  [Source:UniProtKB/TrEMBL;Acc:B0KW90]
ENSCJAG00000019768	KNOWN_BY_PROJECTION	protein_coding	DMGDH	chromosome:C_jacchus3.2.1:2:1:204313951:1	129180995	129278820	D	dimethylglycine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24475]
ENSCJAG00000000034	KNOWN	protein_coding	DPY19L4	chromosome:C_jacchus3.2.1:16:1:96796970:1	46520106	46586435	D	Protein dpy-19 homolog 4 {ECO:0000313|EMBL:JAB08467.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000071}  [Source:UniProtKB/TrEMBL;Acc:F7GYW3]
ENSCJAG00000031669	NOVEL	protein_coding	ENSCJAG00000031669	chromosome:C_jacchus3.2.1:4:1:171630274:1	18826235	18830277	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039676}  [Source:UniProtKB/TrEMBL;Acc:F7FSQ1]
ENSCJAG00000019766	KNOWN_BY_PROJECTION	protein_coding	BHMT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	129163762	129180847	R	betaine--homocysteine S-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:1048]
ENSCJAG00000021315	NOVEL	protein_coding	ENSCJAG00000021315	chromosome:C_jacchus3.2.1:4:1:171630274:1	18620389	18665698	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039679}  [Source:UniProtKB/TrEMBL;Acc:F7FSP3]
ENSCJAG00000015042	KNOWN_BY_PROJECTION	protein_coding	BRWD1	chromosome:C_jacchus3.2.1:21:1:50472720:1	43101528	43246008	R	bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]
ENSCJAG00000000043	KNOWN_BY_PROJECTION	protein_coding	ESRP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	46442265	46508279	D	epithelial splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25966]
ENSCJAG00000009475	NOVEL	pseudogene	ENSCJAG00000009475	chromosome:C_jacchus3.2.1:4:1:171630274:1	18158469	18158850	R	<no descrition>
ENSCJAG00000000064	KNOWN_BY_PROJECTION	protein_coding	KIAA1429	chromosome:C_jacchus3.2.1:16:1:96796970:1	46278836	46355842	R	KIAA1429 [Source:HGNC Symbol;Acc:HGNC:24500]
ENSCJAG00000015016	KNOWN	protein_coding	PSMG1	chromosome:C_jacchus3.2.1:21:1:50472720:1	43087189	43099339	R	Proteasome assembly chaperone 1  [Source:UniProtKB/Swiss-Prot;Acc:B0KW86]
ENSCJAG00000009301	KNOWN	protein_coding	MSMO1	chromosome:C_jacchus3.2.1:3:1:190850796:1	25873223	26104686	R	Methylsterol monooxygenase 1 isoform 1 {ECO:0000313|EMBL:JAB06617.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017048}  [Source:UniProtKB/TrEMBL;Acc:F7HW86]
ENSCJAG00000001090	NOVEL	protein_coding	ENSCJAG00000001090	chromosome:C_jacchus3.2.1:4:1:171630274:1	17775696	17777216	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001876}  [Source:UniProtKB/TrEMBL;Acc:F7BE51]
ENSCJAG00000008102	KNOWN_BY_PROJECTION	protein_coding	ETS2	chromosome:C_jacchus3.2.1:21:1:50472720:1	42734945	42755999	D	v-ets avian erythroblastosis virus E26 oncogene homolog 2 [Source:HGNC Symbol;Acc:HGNC:3489]
ENSCJAG00000001070	KNOWN_BY_PROJECTION	protein_coding	MAK	chromosome:C_jacchus3.2.1:4:1:171630274:1	17761841	17822905	D	male germ cell-associated kinase [Source:HGNC Symbol;Acc:HGNC:6816]
ENSCJAG00000032417	NOVEL	protein_coding	ENSCJAG00000032417	chromosome:C_jacchus3.2.1:3:1:190850796:1	24019253	24020682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050535}  [Source:UniProtKB/TrEMBL;Acc:F7FAL1]
ENSCJAG00000000100	KNOWN	protein_coding	PDP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	45684201	45693367	D	Pyruvate dehyrogenase phosphatase catalytic subunit 1 isoform 2 {ECO:0000313|EMBL:JAB18866.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000175}  [Source:UniProtKB/TrEMBL;Acc:F7E6B2]
ENSCJAG00000008184	KNOWN_BY_PROJECTION	protein_coding	DSCR8	chromosome:C_jacchus3.2.1:21:1:50472720:1	42093063	42106730	D	Down syndrome critical region 8 [Source:HGNC Symbol;Acc:HGNC:16707]
ENSCJAG00000020802	KNOWN	protein_coding	WNT10B	chromosome:C_jacchus3.2.1:9:1:124281992:1	37736403	37742643	R	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F7IIN7]
ENSCJAG00000033370	NOVEL	protein_coding	ENSCJAG00000033370	chromosome:C_jacchus3.2.1:3:1:190850796:1	23503414	23504616	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F6XSX9]
ENSCJAG00000020800	KNOWN_BY_PROJECTION	protein_coding	ARF3	chromosome:C_jacchus3.2.1:9:1:124281992:1	37706957	37709291	R	ADP-ribosylation factor 3 [Source:HGNC Symbol;Acc:HGNC:654]
ENSCJAG00000002626	KNOWN_BY_PROJECTION	protein_coding	DSCR3	chromosome:C_jacchus3.2.1:21:1:50472720:1	41213855	41259648	R	Down syndrome critical region 3 [Source:HGNC Symbol;Acc:HGNC:3044]
ENSCJAG00000005040	KNOWN	protein_coding	ELOVL2	chromosome:C_jacchus3.2.1:4:1:171630274:1	17553023	17617339	D	Elongation of very long chain fatty acids protein {ECO:0000256|RuleBase:RU361115}  [Source:UniProtKB/TrEMBL;Acc:F7IDA2]
ENSCJAG00000005060	KNOWN_BY_PROJECTION	protein_coding	NEDD9	chromosome:C_jacchus3.2.1:4:1:171630274:1	17260663	17481568	D	neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]
ENSCJAG00000005075	KNOWN_BY_PROJECTION	protein_coding	TMEM170B	chromosome:C_jacchus3.2.1:4:1:171630274:1	17072660	17082308	R	transmembrane protein 170B [Source:HGNC Symbol;Acc:HGNC:34244]
ENSCJAG00000015978	KNOWN	protein_coding	NUBP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	16383033	16407986	R	Cytosolic Fe-S cluster assembly factor NUBP1 {ECO:0000256|HAMAP-Rule:MF_03038}  [Source:UniProtKB/TrEMBL;Acc:F7HS53]
ENSCJAG00000005100	KNOWN_BY_PROJECTION	protein_coding	HIVEP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	16512328	16659882	R	human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
ENSCJAG00000015995	KNOWN_BY_PROJECTION	protein_coding	TVP23A	chromosome:C_jacchus3.2.1:12:1:121768101:1	16328145	16383778	D	trans-golgi network vesicle protein 23 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:20398]
ENSCJAG00000000126	KNOWN	protein_coding	FAM92A1	chromosome:C_jacchus3.2.1:16:1:96796970:1	45473402	45504440	D	Protein FAM92A1 {ECO:0000313|EMBL:JAB10647.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000212}  [Source:UniProtKB/TrEMBL;Acc:F7GYB6]
ENSCJAG00000020792	KNOWN	protein_coding	CCDC65	chromosome:C_jacchus3.2.1:9:1:124281992:1	37669430	37699311	D	Coiled-coil domain-containing protein 65 {ECO:0000313|EMBL:JAB02445.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038680}  [Source:UniProtKB/TrEMBL;Acc:F7IT01]
ENSCJAG00000000130	NOVEL	protein_coding	ENSCJAG00000000130	chromosome:C_jacchus3.2.1:16:1:96796970:1	45441292	45443471	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000218}  [Source:UniProtKB/TrEMBL;Acc:F7GYA7]
ENSCJAG00000000143	NOVEL	pseudogene	ENSCJAG00000000143	chromosome:C_jacchus3.2.1:16:1:96796970:1	44656697	44656911	D	<no descrition>
ENSCJAG00000019802	KNOWN_BY_PROJECTION	protein_coding	SIRT5	chromosome:C_jacchus3.2.1:4:1:171630274:1	15073834	15107678	R	sirtuin 5 [Source:HGNC Symbol;Acc:HGNC:14933]
ENSCJAG00000002697	KNOWN	protein_coding	HLCS	chromosome:C_jacchus3.2.1:21:1:50472720:1	40746928	40977796	R	Biotin--protein ligase {ECO:0000313|EMBL:JAB10382.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004901}  [Source:UniProtKB/TrEMBL;Acc:F6UZY2]
ENSCJAG00000004702	KNOWN_BY_PROJECTION	protein_coding	ANXA10	chromosome:C_jacchus3.2.1:3:1:190850796:1	21631012	21732572	R	annexin A10 [Source:HGNC Symbol;Acc:HGNC:534]
ENSCJAG00000019798	KNOWN	protein_coding	NOL7	chromosome:C_jacchus3.2.1:4:1:171630274:1	15067003	15072188	R	Nucleolar protein 7 {ECO:0000313|EMBL:JAB19110.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036813}  [Source:UniProtKB/TrEMBL;Acc:F6TX49]
ENSCJAG00000002704	KNOWN_BY_PROJECTION	protein_coding	SIM2	chromosome:C_jacchus3.2.1:21:1:50472720:1	40687192	40740074	D	single-minded family bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:10883]
ENSCJAG00000002723	NOVEL	pseudogene	ENSCJAG00000002723	chromosome:C_jacchus3.2.1:21:1:50472720:1	40607213	40607796	R	<no descrition>
ENSCJAG00000000184	KNOWN_BY_PROJECTION	protein_coding	TMEM55A	chromosome:C_jacchus3.2.1:16:1:96796970:1	42780788	42824819	R	transmembrane protein 55A [Source:HGNC Symbol;Acc:HGNC:25452]
ENSCJAG00000002772	KNOWN_BY_PROJECTION	protein_coding	CHAF1B	chromosome:C_jacchus3.2.1:21:1:50472720:1	40394207	40429821	D	chromatin assembly factor 1, subunit B (p60) [Source:HGNC Symbol;Acc:HGNC:1911]
ENSCJAG00000002781	KNOWN_BY_PROJECTION	protein_coding	MORC3	chromosome:C_jacchus3.2.1:21:1:50472720:1	40328592	40385604	D	MORC family CW-type zinc finger 3 [Source:HGNC Symbol;Acc:HGNC:23572]
ENSCJAG00000016023	KNOWN_BY_PROJECTION	protein_coding	DEXI	chromosome:C_jacchus3.2.1:12:1:121768101:1	16196025	16211750	D	Dexi homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:13267]
ENSCJAG00000000199	KNOWN_BY_PROJECTION	protein_coding	DECR1	chromosome:C_jacchus3.2.1:16:1:96796970:1	41786984	41830231	D	2,4-dienoyl CoA reductase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:2753]
ENSCJAG00000016025	KNOWN_BY_PROJECTION	protein_coding	CLEC16A	chromosome:C_jacchus3.2.1:12:1:121768101:1	15958862	16178193	R	C-type lectin domain family 16, member A [Source:HGNC Symbol;Acc:HGNC:29013]
ENSCJAG00000002793	KNOWN_BY_PROJECTION	protein_coding	CBR3	chromosome:C_jacchus3.2.1:21:1:50472720:1	40103396	40181128	D	carbonyl reductase 3 [Source:HGNC Symbol;Acc:HGNC:1549]
ENSCJAG00000022986	NOVEL	pseudogene	ENSCJAG00000022986	chromosome:C_jacchus3.2.1:12:1:121768101:1	15859886	15860193	D	<no descrition>
ENSCJAG00000016044	KNOWN_BY_PROJECTION	protein_coding	SOCS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	15876873	15878119	D	suppressor of cytokine signaling 1 [Source:HGNC Symbol;Acc:HGNC:19383]
ENSCJAG00000016054	NOVEL	protein_coding	ENSCJAG00000016054	chromosome:C_jacchus3.2.1:12:1:121768101:1	15770709	15777010	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029535}  [Source:UniProtKB/TrEMBL;Acc:F7ICC6]
ENSCJAG00000031489	NOVEL	protein_coding	ENSCJAG00000031489	chromosome:C_jacchus3.2.1:12:1:121768101:1	15539662	15540670	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049835}  [Source:UniProtKB/TrEMBL;Acc:F6ZCU4]
ENSCJAG00000002913	KNOWN	protein_coding	CD83	chromosome:C_jacchus3.2.1:4:1:171630274:1	14539536	14558854	R	CD83 antigen isoform a {ECO:0000313|EMBL:JAB16047.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005283}  [Source:UniProtKB/TrEMBL;Acc:F7HSD1]
ENSCJAG00000031739	NOVEL	protein_coding	ENSCJAG00000031739	chromosome:C_jacchus3.2.1:4:1:171630274:1	13549133	13549632	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045772}  [Source:UniProtKB/TrEMBL;Acc:F6SG20]
ENSCJAG00000004726	KNOWN_BY_PROJECTION	protein_coding	DDX60	chromosome:C_jacchus3.2.1:3:1:190850796:1	21302709	21605383	D	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Source:HGNC Symbol;Acc:HGNC:25942]
ENSCJAG00000002838	KNOWN_BY_PROJECTION	protein_coding	RCAN1	chromosome:C_jacchus3.2.1:21:1:50472720:1	38537487	38639205	R	regulator of calcineurin 1 [Source:HGNC Symbol;Acc:HGNC:3040]
ENSCJAG00000019584	KNOWN	protein_coding	ZFYVE16	chromosome:C_jacchus3.2.1:2:1:204313951:1	127753087	127810389	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036395}; Zinc finger FYVE domain-containing protein 16 {ECO:0000313|EMBL:JAB29964.1}  [Source:UniProtKB/TrEMBL;Acc:F7GDV7]
ENSCJAG00000000247	KNOWN_BY_PROJECTION	protein_coding	CNBD1	chromosome:C_jacchus3.2.1:16:1:96796970:1	39010239	39132032	D	cyclic nucleotide binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26663]
ENSCJAG00000000263	NOVEL	protein_coding	ENSCJAG00000000263	chromosome:C_jacchus3.2.1:16:1:96796970:1	38400199	38400934	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000436}  [Source:UniProtKB/TrEMBL;Acc:F7FPI5]
ENSCJAG00000031183	NOVEL	protein_coding	ENSCJAG00000031183	chromosome:C_jacchus3.2.1:21:1:50472720:1	38432594	38432926	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052418}  [Source:UniProtKB/TrEMBL;Acc:F7I9K3]
ENSCJAG00000034397	NOVEL	protein_coding	ENSCJAG00000034397	chromosome:C_jacchus3.2.1:21:1:50472720:1	38387255	38387547	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044258}  [Source:UniProtKB/TrEMBL;Acc:F7DK57]
ENSCJAG00000002863	KNOWN_BY_PROJECTION	protein_coding	KCNE2	chromosome:C_jacchus3.2.1:21:1:50472720:1	38403595	38409659	D	potassium channel, voltage gated subfamily E regulatory beta subunit 2 [Source:HGNC Symbol;Acc:HGNC:6242]
ENSCJAG00000002870	NOVEL	pseudogene	ENSCJAG00000002870	chromosome:C_jacchus3.2.1:21:1:50472720:1	38118792	38120827	D	<no descrition>
ENSCJAG00000004831	NOVEL	protein_coding	ENSCJAG00000004831	chromosome:C_jacchus3.2.1:3:1:190850796:1	21151249	21151795	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008809}  [Source:UniProtKB/TrEMBL;Acc:F7IHK7]
ENSCJAG00000002867	KNOWN_BY_PROJECTION	protein_coding	MRPS6	chromosome:C_jacchus3.2.1:21:1:50472720:1	38094861	38165507	D	mitochondrial ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:14051]
ENSCJAG00000005717	KNOWN_BY_PROJECTION	protein_coding	JARID2	chromosome:C_jacchus3.2.1:4:1:171630274:1	13177608	13470744	R	jumonji, AT rich interactive domain 2 [Source:HGNC Symbol;Acc:HGNC:6196]
ENSCJAG00000000249	KNOWN_BY_PROJECTION	protein_coding	CNGB3	chromosome:C_jacchus3.2.1:16:1:96796970:1	38385772	38545258	R	cyclic nucleotide gated channel beta 3 [Source:HGNC Symbol;Acc:HGNC:2153]
ENSCJAG00000019572	KNOWN	protein_coding	FAM151B	chromosome:C_jacchus3.2.1:2:1:204313951:1	127671342	127741911	R	Protein FAM151B {ECO:0000313|EMBL:JAB05329.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036348}  [Source:UniProtKB/TrEMBL;Acc:F7GXZ1]
ENSCJAG00000005751	KNOWN_BY_PROJECTION	protein_coding	DTNBP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	13165099	13175948	D	dystrobrevin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17328]
ENSCJAG00000034552	NOVEL	protein_coding	ENSCJAG00000034552	chromosome:C_jacchus3.2.1:4:1:171630274:1	13082875	13096264	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010571}  [Source:UniProtKB/TrEMBL;Acc:F7IAX7]
ENSCJAG00000019567	KNOWN_BY_PROJECTION	protein_coding	ANKRD34B	chromosome:C_jacchus3.2.1:2:1:204313951:1	127640865	127655871	D	ankyrin repeat domain 34B [Source:HGNC Symbol;Acc:HGNC:33736]
ENSCJAG00000019556	KNOWN	protein_coding	ENSCJAG00000019556	chromosome:C_jacchus3.2.1:2:1:204313951:1	127554611	127589627	D	Dihydrofolate reductase {ECO:0000313|EMBL:JAB06585.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047458}  [Source:UniProtKB/TrEMBL;Acc:F7IFS4]
ENSCJAG00000019553	NOVEL	pseudogene	ENSCJAG00000019553	chromosome:C_jacchus3.2.1:2:1:204313951:1	127393565	127394419	D	<no descrition>
ENSCJAG00000000279	KNOWN	protein_coding	RMDN1	chromosome:C_jacchus3.2.1:16:1:96796970:1	38273443	38314376	R	Regulator of microtubule dynamics protein 1 {ECO:0000313|EMBL:JAB04587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000483}  [Source:UniProtKB/TrEMBL;Acc:F7EWT6]
ENSCJAG00000006563	NOVEL	protein_coding	ATXN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	12259832	12289740	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012105}  [Source:UniProtKB/TrEMBL;Acc:F7EJJ5]
ENSCJAG00000020762	KNOWN	protein_coding	CACNB3	chromosome:C_jacchus3.2.1:9:1:124281992:1	37562762	37577726	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038644}; Voltage-dependent L-type calcium channel subunit beta-3 isoform 3 {ECO:0000313|EMBL:JAB09866.1}  [Source:UniProtKB/TrEMBL;Acc:F7HQ14]
ENSCJAG00000006574	NOVEL	protein_coding	ENSCJAG00000006574	chromosome:C_jacchus3.2.1:4:1:171630274:1	11815981	11838365	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012131}  [Source:UniProtKB/TrEMBL;Acc:F7EIV9]
ENSCJAG00000000292	KNOWN	protein_coding	WWP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	38172580	38267365	D	E3 ubiquitin-protein ligase {ECO:0000256|PIRNR:PIRNR001569}  [Source:UniProtKB/TrEMBL;Acc:F7GXT3]
ENSCJAG00000019548	NOVEL	protein_coding	ENSCJAG00000019548	chromosome:C_jacchus3.2.1:2:1:204313951:1	127385287	127554817	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036318}  [Source:UniProtKB/TrEMBL;Acc:F7H8I8]
ENSCJAG00000033386	NOVEL	protein_coding	ENSCJAG00000033386	chromosome:C_jacchus3.2.1:2:1:204313951:1	127253977	127254766	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048628}  [Source:UniProtKB/TrEMBL;Acc:F6TLX7]
ENSCJAG00000000342	KNOWN_BY_PROJECTION	protein_coding	SLC7A13	chromosome:C_jacchus3.2.1:16:1:96796970:1	38022517	38030713	R	solute carrier family 7 (anionic amino acid transporter), member 13 [Source:HGNC Symbol;Acc:HGNC:23092]
ENSCJAG00000000351	KNOWN	protein_coding	CA2	chromosome:C_jacchus3.2.1:16:1:96796970:1	37475271	37493976	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000611}  [Source:UniProtKB/TrEMBL;Acc:F6QLP2]
ENSCJAG00000016042	NOVEL	protein_coding	ENSCJAG00000016042	chromosome:C_jacchus3.2.1:12:1:121768101:1	15198898	15201426	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029515}  [Source:UniProtKB/TrEMBL;Acc:F7IH37]
ENSCJAG00000020756	KNOWN_BY_PROJECTION	protein_coding	ADCY6	chromosome:C_jacchus3.2.1:9:1:124281992:1	37508674	37525377	R	adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]
ENSCJAG00000000369	KNOWN_BY_PROJECTION	protein_coding	CA3	chromosome:C_jacchus3.2.1:16:1:96796970:1	37451494	37460900	D	carbonic anhydrase III, muscle specific [Source:HGNC Symbol;Acc:HGNC:1374]
ENSCJAG00000019512	KNOWN_BY_PROJECTION	protein_coding	RASGRF2	chromosome:C_jacchus3.2.1:2:1:204313951:1	126931608	127208346	R	Ras protein-specific guanine nucleotide-releasing factor 2 [Source:HGNC Symbol;Acc:HGNC:9876]
ENSCJAG00000000373	KNOWN_BY_PROJECTION	protein_coding	CA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	37349112	37361694	R	carbonic anhydrase I [Source:HGNC Symbol;Acc:HGNC:1368]
ENSCJAG00000016037	KNOWN_BY_PROJECTION	protein_coding	TNFRSF17	chromosome:C_jacchus3.2.1:12:1:121768101:1	15198859	15201737	R	tumor necrosis factor receptor superfamily, member 17 [Source:HGNC Symbol;Acc:HGNC:11913]
ENSCJAG00000004780	KNOWN_BY_PROJECTION	protein_coding	PALLD	chromosome:C_jacchus3.2.1:3:1:190850796:1	20805521	21280629	R	palladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]
ENSCJAG00000004846	NOVEL	protein_coding	ENSCJAG00000004846	chromosome:C_jacchus3.2.1:3:1:190850796:1	20787335	20788077	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008840}  [Source:UniProtKB/TrEMBL;Acc:F7IHI4]
ENSCJAG00000016030	NOVEL	protein_coding	ENSCJAG00000016030	chromosome:C_jacchus3.2.1:12:1:121768101:1	15079834	15083594	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029499}  [Source:UniProtKB/TrEMBL;Acc:F7IP31]
ENSCJAG00000000393	KNOWN_BY_PROJECTION	protein_coding	LRRCC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	37119740	37161683	D	leucine rich repeat and coiled-coil centrosomal protein 1 [Source:HGNC Symbol;Acc:HGNC:29373]
ENSCJAG00000016021	KNOWN_BY_PROJECTION	protein_coding	SNX29	chromosome:C_jacchus3.2.1:12:1:121768101:1	15106605	15134303	R	sorting nexin 29 [Source:HGNC Symbol;Acc:HGNC:30542]
ENSCJAG00000004837	KNOWN_BY_PROJECTION	protein_coding	CBR4	chromosome:C_jacchus3.2.1:3:1:190850796:1	20706979	20744277	D	carbonyl reductase 4 [Source:HGNC Symbol;Acc:HGNC:25891]
ENSCJAG00000032654	NOVEL	protein_coding	ENSCJAG00000032654	chromosome:C_jacchus3.2.1:3:1:190850796:1	20667366	20668292	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012996}  [Source:UniProtKB/TrEMBL;Acc:F6QTR2]
ENSCJAG00000016016	NOVEL	protein_coding	ENSCJAG00000016016	chromosome:C_jacchus3.2.1:12:1:121768101:1	14931296	14932360	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029470}  [Source:UniProtKB/TrEMBL;Acc:F7IRG9]
ENSCJAG00000019484	NOVEL	pseudogene	ENSCJAG00000019484	chromosome:C_jacchus3.2.1:2:1:204313951:1	126824996	126825486	R	<no descrition>
ENSCJAG00000016003	NOVEL	pseudogene	ENSCJAG00000016003	chromosome:C_jacchus3.2.1:12:1:121768101:1	14031405	14031871	D	<no descrition>
ENSCJAG00000004855	NOVEL	protein_coding	ENSCJAG00000004855	chromosome:C_jacchus3.2.1:3:1:190850796:1	20426664	20622103	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008892}  [Source:UniProtKB/TrEMBL;Acc:F7IF68]
ENSCJAG00000002882	KNOWN_BY_PROJECTION	protein_coding	ITSN1	chromosome:C_jacchus3.2.1:21:1:50472720:1	37653991	37889375	D	intersectin 1 (SH3 domain protein) [Source:HGNC Symbol;Acc:HGNC:6183]
ENSCJAG00000020731	NOVEL	protein_coding	ENSCJAG00000020731	chromosome:C_jacchus3.2.1:9:1:124281992:1	37307672	37323495	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038555}  [Source:UniProtKB/TrEMBL;Acc:F7I999]
ENSCJAG00000015982	KNOWN_BY_PROJECTION	protein_coding	ERCC4	chromosome:C_jacchus3.2.1:12:1:121768101:1	13089980	13146635	R	excision repair cross-complementation group 4 [Source:HGNC Symbol;Acc:HGNC:3436]
ENSCJAG00000000435	KNOWN	protein_coding	FABP4	chromosome:C_jacchus3.2.1:16:1:96796970:1	33521615	33526759	R	Fatty acid-binding protein, adipocyte {ECO:0000313|EMBL:JAB02395.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000745}  [Source:UniProtKB/TrEMBL;Acc:F6SD36]
ENSCJAG00000033187	NOVEL	protein_coding	ENSCJAG00000033187	chromosome:C_jacchus3.2.1:2:1:204313951:1	126628147	126629469	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046789}  [Source:UniProtKB/TrEMBL;Acc:F7I1A3]
ENSCJAG00000000441	KNOWN_BY_PROJECTION	protein_coding	FABP9	chromosome:C_jacchus3.2.1:16:1:96796970:1	33504914	33508061	R	fatty acid binding protein 9, testis [Source:HGNC Symbol;Acc:HGNC:3563]
ENSCJAG00000000447	KNOWN	protein_coding	PMP2	chromosome:C_jacchus3.2.1:16:1:96796970:1	33490679	33497693	R	Myelin P2 protein {ECO:0000313|EMBL:JAB25129.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000759}  [Source:UniProtKB/TrEMBL;Acc:F6S344]
ENSCJAG00000035928	NOVEL	pseudogene	ENSCJAG00000035928	chromosome:C_jacchus3.2.1:12:1:121768101:1	12737393	12738957	R	<no descrition>
ENSCJAG00000020716	KNOWN_BY_PROJECTION	protein_coding	ZNF641	chromosome:C_jacchus3.2.1:9:1:124281992:1	37174877	37184784	D	zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
ENSCJAG00000000444	KNOWN_BY_PROJECTION	protein_coding	FABP5	chromosome:C_jacchus3.2.1:16:1:96796970:1	33357305	33361848	D	fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:HGNC:3560]
ENSCJAG00000000453	KNOWN	protein_coding	ZNF704	chromosome:C_jacchus3.2.1:16:1:96796970:1	32726371	32902545	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000764}; Zinc finger protein 704 {ECO:0000313|EMBL:JAB18544.1}  [Source:UniProtKB/TrEMBL;Acc:F6S2J5]
ENSCJAG00000000451	KNOWN	protein_coding	PAG1	chromosome:C_jacchus3.2.1:16:1:96796970:1	33062747	33208880	R	Phosphoprotein associated with glycosphingolipid-enriched microdomains 1 {ECO:0000313|EMBL:JAB32432.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000762}  [Source:UniProtKB/TrEMBL;Acc:F6S2K6]
ENSCJAG00000000454	KNOWN_BY_PROJECTION	protein_coding	ZBTB10	chromosome:C_jacchus3.2.1:16:1:96796970:1	32555650	32594947	D	zinc finger and BTB domain containing 10 [Source:HGNC Symbol;Acc:HGNC:30953]
ENSCJAG00000015925	KNOWN	protein_coding	MKL2	chromosome:C_jacchus3.2.1:12:1:121768101:1	12737393	12945944	R	MKL/myocardin-like protein 2 {ECO:0000313|EMBL:JAB18330.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029399}  [Source:UniProtKB/TrEMBL;Acc:F7I323]
ENSCJAG00000019418	KNOWN	protein_coding	SSBP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	126405870	126874619	D	Single-stranded DNA-binding protein 2 isoform 3 {ECO:0000313|EMBL:JAB24752.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050709}  [Source:UniProtKB/TrEMBL;Acc:F7EWK9]
ENSCJAG00000034471	NOVEL	protein_coding	ENSCJAG00000034471	chromosome:C_jacchus3.2.1:12:1:121768101:1	12486700	12488027	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048148}  [Source:UniProtKB/TrEMBL;Acc:F7H8W7]
ENSCJAG00000000463	NOVEL	pseudogene	ENSCJAG00000000463	chromosome:C_jacchus3.2.1:16:1:96796970:1	32380776	32381336	D	<no descrition>
ENSCJAG00000032081	NOVEL	protein_coding	ENSCJAG00000032081	chromosome:C_jacchus3.2.1:16:1:96796970:1	31541824	31542447	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042613}  [Source:UniProtKB/TrEMBL;Acc:F7B856]
ENSCJAG00000011241	KNOWN_BY_PROJECTION	protein_coding	ATP6AP1L	chromosome:C_jacchus3.2.1:2:1:204313951:1	125824133	125837227	R	ATPase, H+ transporting, lysosomal accessory protein 1-like [Source:HGNC Symbol;Acc:HGNC:28091]
ENSCJAG00000011238	KNOWN	protein_coding	TMEM167A	chromosome:C_jacchus3.2.1:2:1:204313951:1	124990802	125018627	D	Protein kish {ECO:0000256|RuleBase:RU910717}  [Source:UniProtKB/TrEMBL;Acc:F7CZW0]
ENSCJAG00000000494	KNOWN_BY_PROJECTION	protein_coding	IL7	chromosome:C_jacchus3.2.1:16:1:96796970:1	30841536	31009207	R	interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]
ENSCJAG00000004881	KNOWN_BY_PROJECTION	protein_coding	NEK1	chromosome:C_jacchus3.2.1:3:1:190850796:1	20082721	20333096	D	NIMA-related kinase 1 [Source:HGNC Symbol;Acc:HGNC:7744]
ENSCJAG00000011227	KNOWN	protein_coding	XRCC4	chromosome:C_jacchus3.2.1:2:1:204313951:1	124661499	124990757	R	Callithrix jacchus X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001267765]
ENSCJAG00000000495	KNOWN	protein_coding	ZC2HC1A	chromosome:C_jacchus3.2.1:16:1:96796970:1	30776918	30826950	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000860}  [Source:UniProtKB/TrEMBL;Acc:F6PMI1]
ENSCJAG00000033737	NOVEL	pseudogene	ENSCJAG00000033737	chromosome:C_jacchus3.2.1:16:1:96796970:1	28345226	28346358	D	<no descrition>
ENSCJAG00000034539	NOVEL	pseudogene	ENSCJAG00000034539	chromosome:C_jacchus3.2.1:16:1:96796970:1	28827059	28827608	R	<no descrition>
ENSCJAG00000000541	KNOWN_BY_PROJECTION	protein_coding	HNF4G	chromosome:C_jacchus3.2.1:16:1:96796970:1	27750937	27899098	D	hepatocyte nuclear factor 4, gamma [Source:HGNC Symbol;Acc:HGNC:5026]
ENSCJAG00000000547	NOVEL	pseudogene	ENSCJAG00000000547	chromosome:C_jacchus3.2.1:16:1:96796970:1	27492515	27493357	R	<no descrition>
ENSCJAG00000036454	NOVEL	protein_coding	ENSCJAG00000036454	chromosome:C_jacchus3.2.1:12:1:121768101:1	12319989	12326317	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052117}  [Source:UniProtKB/TrEMBL;Acc:F7I2R2]
ENSCJAG00000006752	KNOWN	protein_coding	KIF13A	chromosome:C_jacchus3.2.1:4:1:171630274:1	10643308	10869487	D	Kinesin-like protein KIF13A isoform d {ECO:0000313|EMBL:JAB17401.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012777}  [Source:UniProtKB/TrEMBL;Acc:F6REX4]
ENSCJAG00000015840	KNOWN_BY_PROJECTION	protein_coding	PLA2G10	chromosome:C_jacchus3.2.1:12:1:121768101:1	12285505	12293585	D	phospholipase A2, group X [Source:HGNC Symbol;Acc:HGNC:9029]
ENSCJAG00000000549	KNOWN	protein_coding	CRISPLD1	chromosome:C_jacchus3.2.1:16:1:96796970:1	27376036	27425938	D	Cysteine-rich secretory protein LCCL domain-containing 1 {ECO:0000313|EMBL:JAB07194.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000955}  [Source:UniProtKB/TrEMBL;Acc:F6RQY9]
ENSCJAG00000000555	KNOWN	protein_coding	PI15	chromosome:C_jacchus3.2.1:16:1:96796970:1	27238000	27262984	D	Peptidase inhibitor 15 preproprotein {ECO:0000313|EMBL:JAB08001.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000962}  [Source:UniProtKB/TrEMBL;Acc:F6RQB0]
ENSCJAG00000000560	KNOWN	protein_coding	GDAP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	26831541	26845071	D	Ganglioside-induced differentiation-associated protein 1 isoform a {ECO:0000313|EMBL:JAB17094.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000977}  [Source:UniProtKB/TrEMBL;Acc:F6REU6]
ENSCJAG00000005041	KNOWN	protein_coding	MFAP3L	chromosome:C_jacchus3.2.1:3:1:190850796:1	19656902	19702088	D	Microfibrillar-associated protein 3-like isoform 1 {ECO:0000313|EMBL:JAB03741.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009192}  [Source:UniProtKB/TrEMBL;Acc:F7II50]
ENSCJAG00000000567	KNOWN_BY_PROJECTION	protein_coding	JPH1	chromosome:C_jacchus3.2.1:16:1:96796970:1	26722991	26802697	R	junctophilin 1 [Source:HGNC Symbol;Acc:HGNC:14201]
ENSCJAG00000000582	KNOWN	protein_coding	TMEM70	chromosome:C_jacchus3.2.1:16:1:96796970:1	26430376	26441339	D	Transmembrane protein 70, mitochondrial isoform a {ECO:0000313|EMBL:JAB01968.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001006}  [Source:UniProtKB/TrEMBL;Acc:F7C1U3]
ENSCJAG00000006906	KNOWN	protein_coding	TPMT	chromosome:C_jacchus3.2.1:4:1:171630274:1	10510795	10674117	D	Thiopurine S-methyltransferase {ECO:0000313|EMBL:JAB08005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012829}  [Source:UniProtKB/TrEMBL;Acc:F6PNF2]
ENSCJAG00000001080	KNOWN_BY_PROJECTION	protein_coding	CAPRIN2	chromosome:C_jacchus3.2.1:9:1:124281992:1	36491491	36539243	D	caprin family member 2 [Source:HGNC Symbol;Acc:HGNC:21259]
ENSCJAG00000005073	KNOWN_BY_PROJECTION	protein_coding	GALNTL6	chromosome:C_jacchus3.2.1:3:1:190850796:1	16524983	16762791	R	polypeptide N-acetylgalactosaminyltransferase-like 6 [Source:HGNC Symbol;Acc:HGNC:33844]
ENSCJAG00000006934	KNOWN_BY_PROJECTION	protein_coding	KDM1B	chromosome:C_jacchus3.2.1:4:1:171630274:1	10429380	10504605	R	lysine (K)-specific demethylase 1B [Source:HGNC Symbol;Acc:HGNC:21577]
ENSCJAG00000001200	KNOWN	protein_coding	TSPAN11	chromosome:C_jacchus3.2.1:9:1:124281992:1	36267130	36345351	R	Tetraspanin-11 {ECO:0000313|EMBL:JAB08520.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002090}  [Source:UniProtKB/TrEMBL;Acc:F7HVG8]
ENSCJAG00000007686	NOVEL	protein_coding	ENSCJAG00000007686	chromosome:C_jacchus3.2.1:16:1:96796970:1	25568910	25572171	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041427}  [Source:UniProtKB/TrEMBL;Acc:F7HFY1]
ENSCJAG00000001223	NOVEL	pseudogene	ENSCJAG00000001223	chromosome:C_jacchus3.2.1:9:1:124281992:1	36088743	36089216	R	<no descrition>
ENSCJAG00000011140	KNOWN	protein_coding	HAPLN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	124341998	124435369	D	Hyaluronan and proteoglycan link protein 1 {ECO:0000313|EMBL:JAB12591.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020558}  [Source:UniProtKB/TrEMBL;Acc:F7GR30]
ENSCJAG00000033667	NOVEL	protein_coding	ENSCJAG00000033667	chromosome:C_jacchus3.2.1:2:1:204313951:1	123850823	123851129	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020528}  [Source:UniProtKB/TrEMBL;Acc:F7H1F9]
ENSCJAG00000007701	KNOWN	protein_coding	SBSPON	chromosome:C_jacchus3.2.1:16:1:96796970:1	25333490	25360151	R	Somatomedin-B and thrombospondin type-1 domain-containing protein {ECO:0000313|EMBL:JAB21943.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014279}  [Source:UniProtKB/TrEMBL;Acc:F7ITB4]
ENSCJAG00000011129	KNOWN_BY_PROJECTION	protein_coding	COX7C	chromosome:C_jacchus3.2.1:2:1:204313951:1	121502011	121504718	R	cytochrome c oxidase subunit VIIc [Source:HGNC Symbol;Acc:HGNC:2292]
ENSCJAG00000005081	KNOWN	protein_coding	GALNT7	chromosome:C_jacchus3.2.1:3:1:190850796:1	16205328	16363946	R	N-acetylgalactosaminyltransferase 7 {ECO:0000313|EMBL:JAB09633.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009322}  [Source:UniProtKB/TrEMBL;Acc:F7D606]
ENSCJAG00000007726	NOVEL	protein_coding	ENSCJAG00000007726	chromosome:C_jacchus3.2.1:16:1:96796970:1	24492775	24494249	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014311}  [Source:UniProtKB/TrEMBL;Acc:F7IIW7]
ENSCJAG00000006952	KNOWN	protein_coding	DEK	chromosome:C_jacchus3.2.1:4:1:171630274:1	10391694	10427960	D	Protein DEK isoform 1 {ECO:0000313|EMBL:JAB06258.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012889}  [Source:UniProtKB/TrEMBL;Acc:F6TJR7]
ENSCJAG00000005112	KNOWN	protein_coding	HMGB2	chromosome:C_jacchus3.2.1:3:1:190850796:1	16191388	16194305	D	High mobility group protein B2 {ECO:0000313|EMBL:JAB04826.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009355}  [Source:UniProtKB/TrEMBL;Acc:F7HD57]
ENSCJAG00000006964	KNOWN_BY_PROJECTION	protein_coding	RNF144B	chromosome:C_jacchus3.2.1:4:1:171630274:1	10182884	10256630	R	ring finger protein 144B [Source:HGNC Symbol;Acc:HGNC:21578]
ENSCJAG00000007735	KNOWN_BY_PROJECTION	protein_coding	TRPA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	24321705	24377907	R	transient receptor potential cation channel, subfamily A, member 1 [Source:HGNC Symbol;Acc:HGNC:497]
ENSCJAG00000006996	NOVEL	protein_coding	ENSCJAG00000006996	chromosome:C_jacchus3.2.1:4:1:171630274:1	8903709	8904870	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012965}  [Source:UniProtKB/TrEMBL;Acc:F6RDI2]
ENSCJAG00000007766	KNOWN	protein_coding	MSC	chromosome:C_jacchus3.2.1:16:1:96796970:1	24097200	24098956	R	Musculin {ECO:0000313|EMBL:JAB34323.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014385}  [Source:UniProtKB/TrEMBL;Acc:F7I9D7]
ENSCJAG00000005157	NOVEL	protein_coding	ENSCJAG00000005157	chromosome:C_jacchus3.2.1:3:1:190850796:1	15942569	15949929	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009403}  [Source:UniProtKB/TrEMBL;Acc:F7GM45]
ENSCJAG00000007008	NOVEL	pseudogene	ENSCJAG00000007008	chromosome:C_jacchus3.2.1:4:1:171630274:1	8779248	8779558	R	<no descrition>
ENSCJAG00000035497	NOVEL	pseudogene	ENSCJAG00000035497	chromosome:C_jacchus3.2.1:4:1:171630274:1	8533870	8534450	R	<no descrition>
ENSCJAG00000019529	KNOWN_BY_PROJECTION	protein_coding	MBOAT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	8376085	8428488	D	membrane bound O-acyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21579]
ENSCJAG00000003141	NOVEL	protein_coding	C21ORF55	chromosome:C_jacchus3.2.1:21:1:50472720:1	37494909	37498928	R	Putative uncharacterized protein C21ORF55 {ECO:0000313|EMBL:ABZ80251.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042961}  [Source:UniProtKB/TrEMBL;Acc:B0VXG7]
ENSCJAG00000037691	NOVEL	pseudogene	ENSCJAG00000037691	chromosome:C_jacchus3.2.1:4:1:171630274:1	8032559	8034289	R	<no descrition>
ENSCJAG00000007771	KNOWN_BY_PROJECTION	protein_coding	EYA1	chromosome:C_jacchus3.2.1:16:1:96796970:1	23482098	23641033	R	EYA transcriptional coactivator and phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:3519]
ENSCJAG00000007414	NOVEL	pseudogene	ENSCJAG00000007414	chromosome:C_jacchus3.2.1:4:1:171630274:1	7297112	7297492	R	<no descrition>
ENSCJAG00000000056	KNOWN	protein_coding	IFNAR1	chromosome:C_jacchus3.2.1:21:1:50472720:1	37302065	37333154	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000106}  [Source:UniProtKB/TrEMBL;Acc:F7EY94]
ENSCJAG00000007865	KNOWN_BY_PROJECTION	protein_coding	XKR9	chromosome:C_jacchus3.2.1:16:1:96796970:1	22925878	22994473	D	XK, Kell blood group complex subunit-related family, member 9 [Source:HGNC Symbol;Acc:HGNC:20937]
ENSCJAG00000005268	KNOWN_BY_PROJECTION	protein_coding	RRN3	chromosome:C_jacchus3.2.1:12:1:121768101:1	12158310	12194763	R	RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30346]
ENSCJAG00000007416	KNOWN_BY_PROJECTION	protein_coding	SOX4	chromosome:C_jacchus3.2.1:4:1:171630274:1	6869814	7062418	R	SRY (sex determining region Y)-box 4 [Source:HGNC Symbol;Acc:HGNC:11200]
ENSCJAG00000000058	NOVEL	protein_coding	ENSCJAG00000000058	chromosome:C_jacchus3.2.1:21:1:50472720:1	37248097	37274306	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000108}  [Source:UniProtKB/TrEMBL;Acc:F7EY85]
ENSCJAG00000000059	NOVEL	protein_coding	IFNAR2	chromosome:C_jacchus3.2.1:21:1:50472720:1	37220574	37245119	D	Interferon alpha/beta receptor 2 isoform b (Predicted) {ECO:0000313|EMBL:ABZ80248.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048102}  [Source:UniProtKB/TrEMBL;Acc:B0VXG4]
ENSCJAG00000009441	KNOWN_BY_PROJECTION	protein_coding	F2RL3	chromosome:C_jacchus3.2.1:21:1:50472720:1	37022181	37023656	D	coagulation factor II (thrombin) receptor-like 3 [Source:HGNC Symbol;Acc:HGNC:3540]
ENSCJAG00000006004	KNOWN_BY_PROJECTION	protein_coding	KAAG1	chromosome:C_jacchus3.2.1:4:1:171630274:1	4085089	4086919	R	kidney associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:21031]
ENSCJAG00000008066	NOVEL	pseudogene	ENSCJAG00000008066	chromosome:C_jacchus3.2.1:9:1:124281992:1	35777932	35778725	R	<no descrition>
ENSCJAG00000008062	KNOWN_BY_PROJECTION	protein_coding	METTL20	chromosome:C_jacchus3.2.1:9:1:124281992:1	35745506	35752851	R	methyltransferase like 20 [Source:HGNC Symbol;Acc:HGNC:28739]
ENSCJAG00000008052	NOVEL	protein_coding	ENSCJAG00000008052	chromosome:C_jacchus3.2.1:16:1:96796970:1	22314402	22332160	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014861}  [Source:UniProtKB/TrEMBL;Acc:F7I6N5]
ENSCJAG00000013047	KNOWN_BY_PROJECTION	protein_coding	AMN1	chromosome:C_jacchus3.2.1:9:1:124281992:1	35678842	35742344	D	antagonist of mitotic exit network 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:27281]
ENSCJAG00000005127	NOVEL	pseudogene	ENSCJAG00000005127	chromosome:C_jacchus3.2.1:16:1:96796970:1	22222979	22223187	D	<no descrition>
ENSCJAG00000013037	KNOWN_BY_PROJECTION	protein_coding	KIAA1551	chromosome:C_jacchus3.2.1:9:1:124281992:1	35471662	35500156	R	KIAA1551 [Source:HGNC Symbol;Acc:HGNC:25559]
ENSCJAG00000005195	KNOWN	protein_coding	CEP44	chromosome:C_jacchus3.2.1:3:1:190850796:1	15107822	15145702	R	Centrosomal protein of 44 kDa isoform a {ECO:0000313|EMBL:JAB05319.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009511}  [Source:UniProtKB/TrEMBL;Acc:F7DM41]
ENSCJAG00000005346	KNOWN	protein_coding	PDXDC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	12053925	12128777	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009843}  [Source:UniProtKB/TrEMBL;Acc:F7F6W8]
ENSCJAG00000004990	NOVEL	protein_coding	ENSCJAG00000004990	chromosome:C_jacchus3.2.1:16:1:96796970:1	20839986	20840845	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009120}  [Source:UniProtKB/TrEMBL;Acc:F7HNN6]
ENSCJAG00000004964	KNOWN_BY_PROJECTION	protein_coding	C8orf34	chromosome:C_jacchus3.2.1:16:1:96796970:1	20659969	21121779	D	chromosome 8 open reading frame 34 [Source:HGNC Symbol;Acc:HGNC:30905]
ENSCJAG00000006038	KNOWN_BY_PROJECTION	protein_coding	GPLD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	3964176	4014566	D	glycosylphosphatidylinositol specific phospholipase D1 [Source:HGNC Symbol;Acc:HGNC:4459]
ENSCJAG00000006063	KNOWN_BY_PROJECTION	protein_coding	ALDH5A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	3899599	3938365	R	aldehyde dehydrogenase 5 family, member A1 [Source:HGNC Symbol;Acc:HGNC:408]
ENSCJAG00000005415	KNOWN	protein_coding	C16ORF45	chromosome:C_jacchus3.2.1:12:1:121768101:1	11792178	11982578	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009894}; Uncharacterized protein C16orf45 isoform 1 {ECO:0000313|EMBL:JAB18238.1}  [Source:UniProtKB/TrEMBL;Acc:F7F6A4]
ENSCJAG00000009160	KNOWN	protein_coding	C21ORF59	chromosome:C_jacchus3.2.1:21:1:50472720:1	36588926	36601444	R	Putative uncharacterized protein C21ORF59 {ECO:0000313|EMBL:ABZ80243.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042832}  [Source:UniProtKB/TrEMBL;Acc:B0VXF9]
ENSCJAG00000004877	KNOWN_BY_PROJECTION	protein_coding	PREX2	chromosome:C_jacchus3.2.1:16:1:96796970:1	20275550	20571273	D	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:22950]
ENSCJAG00000033469	NOVEL	protein_coding	ENSCJAG00000033469	chromosome:C_jacchus3.2.1:2:1:204313951:1	120181093	120182084	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019625}  [Source:UniProtKB/TrEMBL;Acc:F6TZR2]
ENSCJAG00000009130	KNOWN	protein_coding	C21ORF63	chromosome:C_jacchus3.2.1:21:1:50472720:1	36456646	36567125	D	Protein FAM176C {ECO:0000313|EMBL:JAB30898.1}; Putative uncharacterized protein C21ORF63 {ECO:0000313|EMBL:ABZ80242.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016770}  [Source:UniProtKB/TrEMBL;Acc:B0VXF8]
ENSCJAG00000005216	KNOWN	protein_coding	HPGD	chromosome:C_jacchus3.2.1:3:1:190850796:1	14914238	14945323	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009577}  [Source:UniProtKB/TrEMBL;Acc:F7H7I2]
ENSCJAG00000006104	NOVEL	protein_coding	ENSCJAG00000006104	chromosome:C_jacchus3.2.1:4:1:171630274:1	3824747	3826502	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052457}  [Source:UniProtKB/TrEMBL;Acc:F7I2H2]
ENSCJAG00000006074	KNOWN	protein_coding	TDP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	3755346	3904455	D	tyrosyl-DNA phosphodiesterase 2  [Source:RefSeq peptide;Acc:NP_001240694]
ENSCJAG00000006130	KNOWN	protein_coding	ACOT13	chromosome:C_jacchus3.2.1:4:1:171630274:1	3729565	3755164	R	Acyl-coenzyme A thioesterase 13 isoform 1 {ECO:0000313|EMBL:JAB06654.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011259}  [Source:UniProtKB/TrEMBL;Acc:F7IQA2]
ENSCJAG00000006136	KNOWN	protein_coding	C6ORF62	chromosome:C_jacchus3.2.1:4:1:171630274:1	3711869	3726561	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011308}; Uncharacterized protein C6orf62 {ECO:0000313|EMBL:JAB10603.1}  [Source:UniProtKB/TrEMBL;Acc:F7IDG1]
ENSCJAG00000005246	KNOWN_BY_PROJECTION	protein_coding	GLRA3	chromosome:C_jacchus3.2.1:3:1:190850796:1	14598926	14783724	D	glycine receptor, alpha 3 [Source:HGNC Symbol;Acc:HGNC:4328]
ENSCJAG00000009118	KNOWN_BY_PROJECTION	protein_coding	URB1	chromosome:C_jacchus3.2.1:21:1:50472720:1	36356924	36433966	R	URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17344]
ENSCJAG00000009105	NOVEL	protein_coding	MRAP	chromosome:C_jacchus3.2.1:21:1:50472720:1	36332953	36356820	D	Melanocortin 2 receptor accessory protein isoform alpha (Predicted) {ECO:0000313|EMBL:ABZ80241.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052007}  [Source:UniProtKB/TrEMBL;Acc:B0VXF7]
ENSCJAG00000009090	KNOWN	protein_coding	MIS18A	chromosome:C_jacchus3.2.1:21:1:50472720:1	36303270	36313411	R	Protein Mis18-alpha {ECO:0000313|EMBL:JAB05416.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016678}  [Source:UniProtKB/TrEMBL;Acc:F6VMZ4]
ENSCJAG00000004849	KNOWN_BY_PROJECTION	protein_coding	CPA6	chromosome:C_jacchus3.2.1:16:1:96796970:1	19768983	20083252	R	carboxypeptidase A6 [Source:HGNC Symbol;Acc:HGNC:17245]
ENSCJAG00000010857	KNOWN	protein_coding	TMEM161B	chromosome:C_jacchus3.2.1:2:1:204313951:1	119751076	119828626	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020072}  [Source:UniProtKB/TrEMBL;Acc:F7HCM3]
ENSCJAG00000006181	KNOWN_BY_PROJECTION	protein_coding	C6orf229	chromosome:C_jacchus3.2.1:4:1:171630274:1	3637130	3641286	D	chromosome 6 open reading frame 229 [Source:HGNC Symbol;Acc:HGNC:49394]
ENSCJAG00000005263	KNOWN_BY_PROJECTION	protein_coding	ADAM29	chromosome:C_jacchus3.2.1:3:1:190850796:1	14469842	14510053	R	ADAM metallopeptidase domain 29 [Source:HGNC Symbol;Acc:HGNC:207]
ENSCJAG00000010787	NOVEL	pseudogene	ENSCJAG00000010787	chromosome:C_jacchus3.2.1:2:1:204313951:1	117643207	117644283	R	<no descrition>
ENSCJAG00000032372	NOVEL	protein_coding	ENSCJAG00000032372	chromosome:C_jacchus3.2.1:21:1:50472720:1	35573254	35574241	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}  [Source:UniProtKB/TrEMBL;Acc:F7FU01]
ENSCJAG00000005275	KNOWN	protein_coding	GPM6A	chromosome:C_jacchus3.2.1:3:1:190850796:1	13609449	13993293	D	Neuronal membrane glycoprotein M6-a isoform 1 {ECO:0000313|EMBL:JAB03050.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009691}  [Source:UniProtKB/TrEMBL;Acc:F7EFH6]
ENSCJAG00000005543	KNOWN_BY_PROJECTION	protein_coding	MYH11	chromosome:C_jacchus3.2.1:12:1:121768101:1	11512669	11678229	D	myosin, heavy chain 11, smooth muscle [Source:HGNC Symbol;Acc:HGNC:7569]
ENSCJAG00000008881	KNOWN	protein_coding	TIAM1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34871716	35300197	R	T-lymphoma invasion and metastasis-inducing protein 1 {ECO:0000313|EMBL:JAB32708.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046581}  [Source:UniProtKB/TrEMBL;Acc:F7I1F2]
ENSCJAG00000004573	KNOWN_BY_PROJECTION	protein_coding	MCMDC2	chromosome:C_jacchus3.2.1:16:1:96796970:1	19203112	19253255	D	minichromosome maintenance domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26368]
ENSCJAG00000008872	NOVEL	protein_coding	ENSCJAG00000008872	chromosome:C_jacchus3.2.1:21:1:50472720:1	34636420	34687614	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016229}  [Source:UniProtKB/TrEMBL;Acc:F6Y5F4]
ENSCJAG00000008860	NOVEL	protein_coding	ENSCJAG00000008860	chromosome:C_jacchus3.2.1:21:1:50472720:1	34501244	34501553	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050837}  [Source:UniProtKB/TrEMBL;Acc:F7G0X9]
ENSCJAG00000010717	KNOWN	protein_coding	LRRC16A	chromosome:C_jacchus3.2.1:4:1:171630274:1	2708436	3061876	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019941}  [Source:UniProtKB/TrEMBL;Acc:F6Z8V5]
ENSCJAG00000008871	NOVEL	protein_coding	ENSCJAG00000008871	chromosome:C_jacchus3.2.1:21:1:50472720:1	34473723	34652738	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016214}  [Source:UniProtKB/TrEMBL;Acc:F6YP76]
ENSCJAG00000005304	KNOWN_BY_PROJECTION	protein_coding	WDR17	chromosome:C_jacchus3.2.1:3:1:190850796:1	13406701	13536820	R	WD repeat domain 17 [Source:HGNC Symbol;Acc:HGNC:16661]
ENSCJAG00000008840	NOVEL	protein_coding	ENSCJAG00000008840	chromosome:C_jacchus3.2.1:21:1:50472720:1	34450674	34482371	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016206}  [Source:UniProtKB/TrEMBL;Acc:F6YPN9]
ENSCJAG00000008784	NOVEL	protein_coding	ENSCJAG00000008784	chromosome:C_jacchus3.2.1:21:1:50472720:1	34257035	34294092	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016123}  [Source:UniProtKB/TrEMBL;Acc:F7C6U4]
ENSCJAG00000008777	KNOWN_BY_PROJECTION	protein_coding	KRTAP27-1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34167757	34207494	R	keratin associated protein 27-1 [Source:HGNC Symbol;Acc:HGNC:33864]
ENSCJAG00000004535	KNOWN	protein_coding	SGK3	chromosome:C_jacchus3.2.1:16:1:96796970:1	19041431	19194989	D	Serine/threonine-protein kinase Sgk3 {ECO:0000313|EMBL:JAB05040.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008266}  [Source:UniProtKB/TrEMBL;Acc:F7IAV0]
ENSCJAG00000008773	NOVEL	protein_coding	ENSCJAG00000008773	chromosome:C_jacchus3.2.1:21:1:50472720:1	33605444	33619452	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016100}  [Source:UniProtKB/TrEMBL;Acc:F7CM96]
ENSCJAG00000008672	KNOWN_BY_PROJECTION	protein_coding	GRIK1	chromosome:C_jacchus3.2.1:21:1:50472720:1	33403262	33556154	R	glutamate receptor, ionotropic, kainate 1 [Source:HGNC Symbol;Acc:HGNC:4579]
ENSCJAG00000004515	KNOWN	protein_coding	VCPIP1	chromosome:C_jacchus3.2.1:16:1:96796970:1	18960114	18994315	R	Deubiquitinating protein VCIP135 {ECO:0000313|EMBL:JAB17711.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008181}  [Source:UniProtKB/TrEMBL;Acc:F7IQ01]
ENSCJAG00000005400	KNOWN	protein_coding	ASB5	chromosome:C_jacchus3.2.1:3:1:190850796:1	13320076	13381266	D	Ankyrin repeat and SOCS box protein 5 {ECO:0000313|EMBL:JAB08072.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009898}  [Source:UniProtKB/TrEMBL;Acc:F7F682]
ENSCJAG00000010514	NOVEL	protein_coding	ENSCJAG00000010514	chromosome:C_jacchus3.2.1:2:1:204313951:1	114225297	114408670	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019405}  [Source:UniProtKB/TrEMBL;Acc:F6PHF5]
ENSCJAG00000010491	NOVEL	pseudogene	ENSCJAG00000010491	chromosome:C_jacchus3.2.1:2:1:204313951:1	114203066	114203468	R	<no descrition>
ENSCJAG00000010488	KNOWN_BY_PROJECTION	protein_coding	POU5F2	chromosome:C_jacchus3.2.1:2:1:204313951:1	114037979	114038939	D	POU domain class 5, transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:26367]
ENSCJAG00000018143	KNOWN	protein_coding	DNM1L	chromosome:C_jacchus3.2.1:9:1:124281992:1	34637632	34708945	R	Dynamin-1-like protein isoform 1 {ECO:0000313|EMBL:JAB11243.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033723}  [Source:UniProtKB/TrEMBL;Acc:F6TQH9]
ENSCJAG00000009413	KNOWN	protein_coding	CRH	chromosome:C_jacchus3.2.1:16:1:96796970:1	18490585	18492777	R	Corticoliberin preproprotein {ECO:0000313|EMBL:JAB16403.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017227}  [Source:UniProtKB/TrEMBL;Acc:F7I0T1]
ENSCJAG00000008437	KNOWN_BY_PROJECTION	protein_coding	USP16	chromosome:C_jacchus3.2.1:21:1:50472720:1	32857890	32883298	D	ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
ENSCJAG00000010898	KNOWN_BY_PROJECTION	protein_coding	SLC17A2	chromosome:C_jacchus3.2.1:4:1:171630274:1	2451019	2464076	D	solute carrier family 17, member 2 [Source:HGNC Symbol;Acc:HGNC:10930]
ENSCJAG00000034228	NOVEL	protein_coding	ENSCJAG00000034228	chromosome:C_jacchus3.2.1:16:1:96796970:1	18067393	18070060	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044282}  [Source:UniProtKB/TrEMBL;Acc:F7D297]
ENSCJAG00000031484	NOVEL	protein_coding	ENSCJAG00000031484	chromosome:C_jacchus3.2.1:16:1:96796970:1	18064232	18066164	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045835}  [Source:UniProtKB/TrEMBL;Acc:F6QMK7]
ENSCJAG00000010938	KNOWN	protein_coding	TRIM38	chromosome:C_jacchus3.2.1:4:1:171630274:1	2405066	2420888	R	Tripartite motif-containing protein 38 {ECO:0000313|EMBL:JAB03326.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020189}  [Source:UniProtKB/TrEMBL;Acc:F7GAP3]
ENSCJAG00000010388	KNOWN	protein_coding	ANKRD32	chromosome:C_jacchus3.2.1:2:1:204313951:1	113068853	113171740	R	Ankyrin repeat domain-containing protein 32 {ECO:0000313|EMBL:JAB19823.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019184}  [Source:UniProtKB/TrEMBL;Acc:F6QF72]
ENSCJAG00000009305	KNOWN	protein_coding	PDE7A	chromosome:C_jacchus3.2.1:16:1:96796970:1	18035317	18174142	R	High affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A isoform a {ECO:0000313|EMBL:JAB38995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017137}  [Source:UniProtKB/TrEMBL;Acc:F7IHC1]
ENSCJAG00000008428	KNOWN_BY_PROJECTION	protein_coding	RWDD2B	chromosome:C_jacchus3.2.1:21:1:50472720:1	32842557	32852486	R	RWD domain containing 2B [Source:HGNC Symbol;Acc:HGNC:1302]
ENSCJAG00000005434	KNOWN_BY_PROJECTION	protein_coding	VEGFC	chromosome:C_jacchus3.2.1:3:1:190850796:1	12780505	12901518	D	vascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]
ENSCJAG00000018129	KNOWN	protein_coding	YARS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	34619549	34637912	D	Tyrosine--tRNA ligase, mitochondrial {ECO:0000313|EMBL:JAB08628.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045099}  [Source:UniProtKB/TrEMBL;Acc:F6T7V7]
ENSCJAG00000009268	KNOWN_BY_PROJECTION	protein_coding	MTFR1	chromosome:C_jacchus3.2.1:16:1:96796970:1	17961762	18022816	D	mitochondrial fission regulator 1 [Source:HGNC Symbol;Acc:HGNC:29510]
ENSCJAG00000010877	KNOWN_BY_PROJECTION	protein_coding	SLC17A3	chromosome:C_jacchus3.2.1:4:1:171630274:1	2386821	2526544	D	solute carrier family 17 (organic anion transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:10931]
ENSCJAG00000005464	KNOWN_BY_PROJECTION	protein_coding	NEIL3	chromosome:C_jacchus3.2.1:3:1:190850796:1	12180372	12239090	R	nei endonuclease VIII-like 3 (E. coli) [Source:HGNC Symbol;Acc:HGNC:24573]
ENSCJAG00000009253	KNOWN	protein_coding	ARMC1	chromosome:C_jacchus3.2.1:16:1:96796970:1	17917724	17948240	R	Armadillo repeat-containing protein 1 {ECO:0000256|PIRNR:PIRNR013899}  [Source:UniProtKB/TrEMBL;Acc:F7C2D0]
ENSCJAG00000008363	KNOWN	protein_coding	N6AMT1	chromosome:C_jacchus3.2.1:21:1:50472720:1	32726607	32742499	D	HemK methyltransferase family member 2 isoform 1 {ECO:0000313|EMBL:JAB02658.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015405}  [Source:UniProtKB/TrEMBL;Acc:F7GZW1]
ENSCJAG00000009244	KNOWN_BY_PROJECTION	protein_coding	CYP7B1	chromosome:C_jacchus3.2.1:16:1:96796970:1	16957508	17153738	R	cytochrome P450, family 7, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2652]
ENSCJAG00000008355	NOVEL	pseudogene	ENSCJAG00000008355	chromosome:C_jacchus3.2.1:21:1:50472720:1	32714942	32715966	D	<no descrition>
ENSCJAG00000032920	NOVEL	protein_coding	ENSCJAG00000032920	chromosome:C_jacchus3.2.1:21:1:50472720:1	31319097	31320588	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046958}  [Source:UniProtKB/TrEMBL;Acc:F7I3H2]
ENSCJAG00000009231	NOVEL	protein_coding	ENSCJAG00000009231	chromosome:C_jacchus3.2.1:16:1:96796970:1	15599986	15600530	D	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F6UED3]
ENSCJAG00000010345	KNOWN_BY_PROJECTION	protein_coding	MCTP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	112673529	113163210	D	multiple C2 domains, transmembrane 1 [Source:HGNC Symbol;Acc:HGNC:26183]
ENSCJAG00000013997	KNOWN_BY_PROJECTION	protein_coding	ADAMTS5	chromosome:C_jacchus3.2.1:21:1:50472720:1	30853489	30900716	R	ADAM metallopeptidase with thrombospondin type 1 motif, 5 [Source:HGNC Symbol;Acc:HGNC:221]
ENSCJAG00000009309	NOVEL	protein_coding	ENSCJAG00000009309	scaffold:C_jacchus3.2.1:GL287824.1:1:41361:1	3705	30787	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017069}  [Source:UniProtKB/TrEMBL;Acc:H9KWL0]
ENSCJAG00000005769	KNOWN_BY_PROJECTION	protein_coding	ABCC6	chromosome:C_jacchus3.2.1:12:1:121768101:1	11138134	11219614	D	ATP-binding cassette, sub-family C (CFTR/MRP), member 6 [Source:HGNC Symbol;Acc:HGNC:57]
ENSCJAG00000013983	KNOWN_BY_PROJECTION	protein_coding	ADAMTS1	chromosome:C_jacchus3.2.1:21:1:50472720:1	30777642	30787225	R	ADAM metallopeptidase with thrombospondin type 1 motif, 1 [Source:HGNC Symbol;Acc:HGNC:217]
ENSCJAG00000013975	KNOWN	protein_coding	CYYR1	chromosome:C_jacchus3.2.1:21:1:50472720:1	30425197	30535574	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025692}  [Source:UniProtKB/TrEMBL;Acc:F6ZEC4]
ENSCJAG00000009217	KNOWN	protein_coding	YTHDF3	chromosome:C_jacchus3.2.1:16:1:96796970:1	15536216	15581180	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016897}; YTH domain family protein 3 {ECO:0000313|EMBL:JAB11140.1}  [Source:UniProtKB/TrEMBL;Acc:F6W5K5]
ENSCJAG00000005476	KNOWN	protein_coding	AGA	chromosome:C_jacchus3.2.1:3:1:190850796:1	12083879	12097689	D	N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase isoform 1 preproprotein {ECO:0000313|EMBL:JAB02688.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010007}  [Source:UniProtKB/TrEMBL;Acc:F6UPP8]
ENSCJAG00000005500	NOVEL	pseudogene	ENSCJAG00000005500	chromosome:C_jacchus3.2.1:3:1:190850796:1	7349674	7350095	D	<no descrition>
ENSCJAG00000005491	NOVEL	protein_coding	ENSCJAG00000005491	chromosome:C_jacchus3.2.1:3:1:190850796:1	7411351	7412217	R	Adenylate kinase 2, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03168}  [Source:UniProtKB/TrEMBL;Acc:F7CAR4]
ENSCJAG00000009183	KNOWN_BY_PROJECTION	protein_coding	NKAIN3	chromosome:C_jacchus3.2.1:16:1:96796970:1	14983382	15299565	D	Na+/K+ transporting ATPase interacting 3 [Source:HGNC Symbol;Acc:HGNC:26829]
ENSCJAG00000017147	KNOWN	protein_coding	EMP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	10882984	10939317	R	Epithelial membrane protein 2 {ECO:0000313|EMBL:JAB10695.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031512}  [Source:UniProtKB/TrEMBL;Acc:F7I0U4]
ENSCJAG00000031708	NOVEL	protein_coding	ENSCJAG00000031708	scaffold:C_jacchus3.2.1:ACFV01179742.1:1:19546:1	6959	7427	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050529}  [Source:UniProtKB/TrEMBL;Acc:H9KYH4]
ENSCJAG00000013857	KNOWN_BY_PROJECTION	protein_coding	APP	chromosome:C_jacchus3.2.1:21:1:50472720:1	29864808	30152164	R	amyloid beta (A4) precursor protein [Source:HGNC Symbol;Acc:HGNC:620]
ENSCJAG00000010963	KNOWN	protein_coding	HIST4H4	chromosome:C_jacchus3.2.1:4:1:171630274:1	2236815	2398620	R	Histone H4 {ECO:0000256|RuleBase:RU000528}  [Source:UniProtKB/TrEMBL;Acc:F7FGL0]
ENSCJAG00000022435	KNOWN_BY_PROJECTION	protein_coding	HIST1H2AC	chromosome:C_jacchus3.2.1:4:1:171630274:1	2223123	2307299	R	histone cluster 1, H2ac [Source:HGNC Symbol;Acc:HGNC:4733]
ENSCJAG00000018114	KNOWN_BY_PROJECTION	protein_coding	PKP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	34450186	34578877	D	plakophilin 2 [Source:HGNC Symbol;Acc:HGNC:9024]
ENSCJAG00000010951	KNOWN	protein_coding	HIST1H3I	chromosome:C_jacchus3.2.1:4:1:171630274:1	2216159	2399799	R	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7FYT1]
ENSCJAG00000032435	NOVEL	protein_coding	ENSCJAG00000032435	chromosome:C_jacchus3.2.1:12:1:121768101:1	10538837	10540238	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031588}  [Source:UniProtKB/TrEMBL;Acc:F7IPC0]
ENSCJAG00000010321	KNOWN	protein_coding	TTC37	chromosome:C_jacchus3.2.1:2:1:204313951:1	112168574	112276917	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019010}  [Source:UniProtKB/TrEMBL;Acc:F6PU08]
ENSCJAG00000032562	NOVEL	protein_coding	ENSCJAG00000032562	chromosome:C_jacchus3.2.1:9:1:124281992:1	33438000	33438306	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049150}  [Source:UniProtKB/TrEMBL;Acc:F7AI85]
ENSCJAG00000018097	KNOWN	protein_coding	ALG10	chromosome:C_jacchus3.2.1:9:1:124281992:1	33416436	33421965	R	Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase {ECO:0000313|EMBL:JAB26328.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033450}  [Source:UniProtKB/TrEMBL;Acc:F6R067]
ENSCJAG00000009122	KNOWN	protein_coding	ASPH	chromosome:C_jacchus3.2.1:16:1:96796970:1	13979119	14204652	R	Aspartyl/asparaginyl beta-hydroxylase isoform l {ECO:0000313|EMBL:JAB21140.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016712}  [Source:UniProtKB/TrEMBL;Acc:F7BMU8]
ENSCJAG00000011005	KNOWN	protein_coding	HIST1H2BD	chromosome:C_jacchus3.2.1:4:1:171630274:1	2193431	2276060	R	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7I3F9]
ENSCJAG00000005501	KNOWN	protein_coding	TENM3	chromosome:C_jacchus3.2.1:3:1:190850796:1	6684393	6887044	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048150}  [Source:UniProtKB/TrEMBL;Acc:F7H3Q8]
ENSCJAG00000010292	NOVEL	pseudogene	ENSCJAG00000010292	chromosome:C_jacchus3.2.1:2:1:204313951:1	112097364	112098671	R	<no descrition>
ENSCJAG00000022177	KNOWN	protein_coding	HIST1H2BD	chromosome:C_jacchus3.2.1:4:1:171630274:1	2178905	2193843	R	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7H6T6]
ENSCJAG00000010282	KNOWN_BY_PROJECTION	protein_coding	RFESD	chromosome:C_jacchus3.2.1:2:1:204313951:1	112052956	112070030	R	Rieske (Fe-S) domain containing [Source:HGNC Symbol;Acc:HGNC:29587]
ENSCJAG00000011029	KNOWN	protein_coding	HIST4H4	chromosome:C_jacchus3.2.1:4:1:171630274:1	2173140	2392877	D	Histone H4 {ECO:0000256|RuleBase:RU000528}  [Source:UniProtKB/TrEMBL;Acc:F7FGL0]
ENSCJAG00000011048	NOVEL	protein_coding	ENSCJAG00000011048	chromosome:C_jacchus3.2.1:4:1:171630274:1	2108180	2111193	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020373}  [Source:UniProtKB/TrEMBL;Acc:F7GK83]
ENSCJAG00000010268	KNOWN_BY_PROJECTION	protein_coding	SPATA9	chromosome:C_jacchus3.2.1:2:1:204313951:1	112028306	112051736	D	spermatogenesis associated 9 [Source:HGNC Symbol;Acc:HGNC:22988]
ENSCJAG00000033487	NOVEL	pseudogene	ENSCJAG00000033487	chromosome:C_jacchus3.2.1:2:1:204313951:1	111954540	111954885	R	<no descrition>
ENSCJAG00000010250	KNOWN	protein_coding	GLRX	chromosome:C_jacchus3.2.1:2:1:204313951:1	111904064	111914053	D	Glutaredoxin-1 {ECO:0000313|EMBL:JAB03661.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018877}  [Source:UniProtKB/TrEMBL;Acc:F7HFZ7]
ENSCJAG00000017187	KNOWN	protein_coding	C16ORF72	chromosome:C_jacchus3.2.1:12:1:121768101:1	9461573	9492565	R	UPF0472 protein C16orf72 {ECO:0000313|EMBL:JAB07541.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031601}  [Source:UniProtKB/TrEMBL;Acc:F7IJL5]
ENSCJAG00000005526	KNOWN_BY_PROJECTION	protein_coding	DCTD	chromosome:C_jacchus3.2.1:3:1:190850796:1	6561163	6594122	D	dCMP deaminase [Source:HGNC Symbol;Acc:HGNC:2710]
ENSCJAG00000017286	KNOWN	protein_coding	CARHSP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	9242722	9245334	R	Calcium-regulated heat stable protein 1 {ECO:0000313|EMBL:JAB23912.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031794}  [Source:UniProtKB/TrEMBL;Acc:F7IP66]
ENSCJAG00000011068	NOVEL	protein_coding	ENSCJAG00000011068	chromosome:C_jacchus3.2.1:4:1:171630274:1	2059741	2077705	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043817}  [Source:UniProtKB/TrEMBL;Acc:F7IES2]
ENSCJAG00000013752	KNOWN	protein_coding	MRPL39	chromosome:C_jacchus3.2.1:21:1:50472720:1	29530381	29551100	R	39S ribosomal protein L39, mitochondrial isoform a {ECO:0000313|EMBL:JAB15060.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025320}  [Source:UniProtKB/TrEMBL;Acc:F7BJ15]
ENSCJAG00000013745	NOVEL	protein_coding	ENSCJAG00000013745	chromosome:C_jacchus3.2.1:21:1:50472720:1	27347244	27348712	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025270}  [Source:UniProtKB/TrEMBL;Acc:F6W216]
ENSCJAG00000013717	KNOWN_BY_PROJECTION	protein_coding	NCAM2	chromosome:C_jacchus3.2.1:21:1:50472720:1	25633512	25905285	D	neural cell adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:7657]
ENSCJAG00000011050	KNOWN_BY_PROJECTION	protein_coding	BTN1A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	2017277	2026751	R	butyrophilin, subfamily 1, member A1 [Source:HGNC Symbol;Acc:HGNC:1135]
ENSCJAG00000018036	KNOWN	protein_coding	CPNE8	chromosome:C_jacchus3.2.1:9:1:124281992:1	32835052	33086025	D	Copine-8 {ECO:0000313|EMBL:JAB05928.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033432}  [Source:UniProtKB/TrEMBL;Acc:F6RB04]
ENSCJAG00000011175	KNOWN	protein_coding	ZNF322	chromosome:C_jacchus3.2.1:4:1:171630274:1	1819039	1842570	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020587}; Zinc finger protein 322 {ECO:0000313|EMBL:JAB08091.1}  [Source:UniProtKB/TrEMBL;Acc:F7G920]
ENSCJAG00000005591	KNOWN	protein_coding	CDKN2AIP	chromosome:C_jacchus3.2.1:3:1:190850796:1	6002859	6006354	R	CDKN2A-interacting protein {ECO:0000313|EMBL:JAB30741.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010210}  [Source:UniProtKB/TrEMBL;Acc:F6VA21]
ENSCJAG00000022437	NOVEL	pseudogene	ENSCJAG00000022437	chromosome:C_jacchus3.2.1:4:1:171630274:1	1687513	1687989	R	<no descrition>
ENSCJAG00000011182	KNOWN	protein_coding	HIST1H2BK	chromosome:C_jacchus3.2.1:4:1:171630274:1	1672848	1677105	D	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7FWZ8]
ENSCJAG00000005602	KNOWN	protein_coding	ING2	chromosome:C_jacchus3.2.1:3:1:190850796:1	5935952	5941691	R	Inhibitor of growth protein 2 {ECO:0000313|EMBL:JAB06407.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010229}  [Source:UniProtKB/TrEMBL;Acc:F6V9K8]
ENSCJAG00000011186	KNOWN_BY_PROJECTION	protein_coding	PRSS16	chromosome:C_jacchus3.2.1:4:1:171630274:1	1566373	1577617	R	protease, serine, 16 (thymus) [Source:HGNC Symbol;Acc:HGNC:9480]
ENSCJAG00000011226	NOVEL	protein_coding	ENSCJAG00000011226	chromosome:C_jacchus3.2.1:4:1:171630274:1	1492743	1536470	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020675}  [Source:UniProtKB/TrEMBL;Acc:F7DII3]
ENSCJAG00000011235	KNOWN	protein_coding	ZNF184	chromosome:C_jacchus3.2.1:4:1:171630274:1	1406498	1428869	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020699}; Zinc finger protein 184 {ECO:0000313|EMBL:JAB29696.1}  [Source:UniProtKB/TrEMBL;Acc:F7CZR5]
ENSCJAG00000010172	NOVEL	pseudogene	ENSCJAG00000010172	chromosome:C_jacchus3.2.1:4:1:171630274:1	1248167	1249030	R	<no descrition>
ENSCJAG00000003385	KNOWN	protein_coding	CXADR	chromosome:C_jacchus3.2.1:21:1:50472720:1	22165378	22211567	D	Coxsackievirus and adenovirus receptor isoform 1 {ECO:0000313|EMBL:JAB07840.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006182}  [Source:UniProtKB/TrEMBL;Acc:F7D1Y8]
ENSCJAG00000003375	NOVEL	protein_coding	ENSCJAG00000003375	chromosome:C_jacchus3.2.1:21:1:50472720:1	20948698	21351873	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006134}  [Source:UniProtKB/TrEMBL;Acc:F7ESK5]
ENSCJAG00000031480	NOVEL	protein_coding	ENSCJAG00000031480	chromosome:C_jacchus3.2.1:21:1:50472720:1	20809949	20810559	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043959}  [Source:UniProtKB/TrEMBL;Acc:F7IRE3]
ENSCJAG00000018698	KNOWN	protein_coding	HIST1H3I	chromosome:C_jacchus3.2.1:4:1:171630274:1	1059114	1117202	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7FYT1]
ENSCJAG00000018695	NOVEL	protein_coding	ENSCJAG00000018695	chromosome:C_jacchus3.2.1:4:1:171630274:1	1056977	1095114	D	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7FGM6]
ENSCJAG00000008976	KNOWN	protein_coding	CA8	chromosome:C_jacchus3.2.1:16:1:96796970:1	12706808	12800899	R	Carbonic anhydrase-related protein {ECO:0000313|EMBL:JAB17680.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016463}  [Source:UniProtKB/TrEMBL;Acc:F6W8S5]
ENSCJAG00000036509	NOVEL	protein_coding	ENSCJAG00000036509	chromosome:C_jacchus3.2.1:4:1:171630274:1	1056270	1076406	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7ICZ0]
ENSCJAG00000018690	KNOWN	protein_coding	HIST1H2BD	chromosome:C_jacchus3.2.1:4:1:171630274:1	1056267	1114593	R	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7H706]
ENSCJAG00000021887	NOVEL	protein_coding	ENSCJAG00000021887	chromosome:C_jacchus3.2.1:4:1:171630274:1	986229	1004398	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7INL3]
ENSCJAG00000022628	NOVEL	pseudogene	ENSCJAG00000022628	chromosome:C_jacchus3.2.1:16:1:96796970:1	11172861	11173176	D	<no descrition>
ENSCJAG00000017959	NOVEL	pseudogene	ENSCJAG00000017959	chromosome:C_jacchus3.2.1:9:1:124281992:1	32107592	32108385	R	<no descrition>
ENSCJAG00000020505	NOVEL	pseudogene	ENSCJAG00000020505	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	9666	10144	R	<no descrition>
ENSCJAG00000000318	KNOWN_BY_PROJECTION	protein_coding	GSDMA	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	10807	13742	D	gasdermin A [Source:HGNC Symbol;Acc:HGNC:13311]
ENSCJAG00000016117	KNOWN	protein_coding	CAMK1	chromosome:C_jacchus3.2.1:15:1:98464013:1	61668681	61684786	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029701}  [Source:UniProtKB/TrEMBL;Acc:F7IC58]
ENSCJAG00000002776	KNOWN	protein_coding	FGD6	chromosome:C_jacchus3.2.1:9:1:124281992:1	85104356	85266370	R	FYVE, RhoGEF and PH domain-containing protein 6 {ECO:0000313|EMBL:JAB06439.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005089}  [Source:UniProtKB/TrEMBL;Acc:F7HSK2]
ENSCJAG00000010149	KNOWN	protein_coding	SPTBN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	52847334	53072649	R	Spectrin beta chain, non-erythrocytic 1 isoform 1 {ECO:0000313|EMBL:JAB10157.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018933}  [Source:UniProtKB/TrEMBL;Acc:F7H0B6]
ENSCJAG00000016145	KNOWN	protein_coding	TADA3	chromosome:C_jacchus3.2.1:15:1:98464013:1	61695472	61707678	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029762}  [Source:UniProtKB/TrEMBL;Acc:F7I564]
ENSCJAG00000020066	KNOWN_BY_PROJECTION	protein_coding	MYBPC3	chromosome:C_jacchus3.2.1:11:1:130397257:1	110608422	110633287	R	myosin binding protein C, cardiac [Source:HGNC Symbol;Acc:HGNC:7551]
ENSCJAG00000011781	KNOWN_BY_PROJECTION	protein_coding	ZNF496	chromosome:C_jacchus3.2.1:19:1:49578535:1	32873800	32908147	D	zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
ENSCJAG00000016175	KNOWN	protein_coding	ARPC4	chromosome:C_jacchus3.2.1:15:1:98464013:1	61707213	61720876	D	Actin-related protein 2/3 complex subunit 4 isoform a {ECO:0000313|EMBL:JAB10196.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029772}  [Source:UniProtKB/TrEMBL;Acc:F7I548]
ENSCJAG00000000757	NOVEL	protein_coding	ENSCJAG00000000757	chromosome:C_jacchus3.2.1:5:1:159171411:1	74378492	74380418	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001287}  [Source:UniProtKB/TrEMBL;Acc:F6XWI5]
ENSCJAG00000000751	KNOWN_BY_PROJECTION	protein_coding	ZBTB4	chromosome:C_jacchus3.2.1:5:1:159171411:1	74396651	74403376	D	zinc finger and BTB domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23847]
ENSCJAG00000011779	NOVEL	pseudogene	ENSCJAG00000011779	chromosome:C_jacchus3.2.1:19:1:49578535:1	32923065	32923857	R	<no descrition>
ENSCJAG00000016178	NOVEL	protein_coding	ENSCJAG00000016178	chromosome:C_jacchus3.2.1:15:1:98464013:1	61724051	61747897	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029805}  [Source:UniProtKB/TrEMBL;Acc:F7HRD0]
ENSCJAG00000011765	KNOWN_BY_PROJECTION	protein_coding	ZNF695	chromosome:C_jacchus3.2.1:19:1:49578535:1	32939728	33018184	D	zinc finger protein 695 [Source:HGNC Symbol;Acc:HGNC:30954]
ENSCJAG00000014529	KNOWN	protein_coding	RUFY3	chromosome:C_jacchus3.2.1:3:1:190850796:1	123887382	123992417	R	Protein RUFY3 isoform 3 {ECO:0000313|EMBL:JAB08032.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026818}  [Source:UniProtKB/TrEMBL;Acc:F7I930]
ENSCJAG00000000743	KNOWN_BY_PROJECTION	protein_coding	CHRNB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74408936	74426686	R	cholinergic receptor, nicotinic, beta 1 (muscle) [Source:HGNC Symbol;Acc:HGNC:1961]
ENSCJAG00000033470	NOVEL	protein_coding	ENSCJAG00000033470	chromosome:C_jacchus3.2.1:15:1:98464013:1	61755855	61762716	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042553}  [Source:UniProtKB/TrEMBL;Acc:F6V603]
ENSCJAG00000016261	KNOWN_BY_PROJECTION	protein_coding	CIDEC	chromosome:C_jacchus3.2.1:15:1:98464013:1	61818154	61939498	R	cell death-inducing DFFA-like effector c [Source:HGNC Symbol;Acc:HGNC:24229]
ENSCJAG00000011738	KNOWN_BY_PROJECTION	protein_coding	ZNF670	chromosome:C_jacchus3.2.1:19:1:49578535:1	33059828	33142860	R	zinc finger protein 670 [Source:HGNC Symbol;Acc:HGNC:28167]
ENSCJAG00000016201	KNOWN	protein_coding	JAGN1	chromosome:C_jacchus3.2.1:15:1:98464013:1	61847657	61850455	D	Protein jagunal homolog 1 {ECO:0000313|EMBL:JAB03780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029833}  [Source:UniProtKB/TrEMBL;Acc:F7HKL8]
ENSCJAG00000005874	KNOWN_BY_PROJECTION	protein_coding	GLP1R	chromosome:C_jacchus3.2.1:4:1:171630274:1	40072612	40116450	D	glucagon-like peptide 1 receptor [Source:HGNC Symbol;Acc:HGNC:4324]
ENSCJAG00000002807	NOVEL	protein_coding	ENSCJAG00000002807	chromosome:C_jacchus3.2.1:9:1:124281992:1	85167042	85168553	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005095}  [Source:UniProtKB/TrEMBL;Acc:F7HLY2]
ENSCJAG00000016342	KNOWN	protein_coding	FGF11	chromosome:C_jacchus3.2.1:5:1:159171411:1	74428005	74433764	R	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F6Q5K5]
ENSCJAG00000005885	KNOWN_BY_PROJECTION	protein_coding	SAYSD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	40144899	40156635	R	SAYSVFN motif domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21025]
ENSCJAG00000016351	KNOWN_BY_PROJECTION	protein_coding	NLGN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74433028	74466411	R	neuroligin 2 [Source:HGNC Symbol;Acc:HGNC:14290]
ENSCJAG00000005894	KNOWN_BY_PROJECTION	protein_coding	KCNK5	chromosome:C_jacchus3.2.1:4:1:171630274:1	40227605	40265341	R	potassium channel, two pore domain subfamily K, member 5 [Source:HGNC Symbol;Acc:HGNC:6280]
ENSCJAG00000002761	KNOWN	protein_coding	VEZT	chromosome:C_jacchus3.2.1:9:1:124281992:1	85266659	85350127	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005028}; Vezatin {ECO:0000313|EMBL:JAB34489.1}  [Source:UniProtKB/TrEMBL;Acc:F7I393]
ENSCJAG00000005898	KNOWN	protein_coding	KCNK17	chromosome:C_jacchus3.2.1:4:1:171630274:1	40354482	40367962	R	Potassium channel subfamily K member 17 isoform 1 {ECO:0000313|EMBL:JAB15343.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010844}  [Source:UniProtKB/TrEMBL;Acc:F7HWJ6]
ENSCJAG00000017478	KNOWN	protein_coding	LPAR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	154331046	154503830	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032191}  [Source:UniProtKB/TrEMBL;Acc:F7FY94]
ENSCJAG00000011727	KNOWN_BY_PROJECTION	protein_coding	JMJD4	chromosome:C_jacchus3.2.1:19:1:49578535:1	33185331	33190046	R	jumonji domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25724]
ENSCJAG00000016205	KNOWN_BY_PROJECTION	protein_coding	IL17RE	chromosome:C_jacchus3.2.1:15:1:98464013:1	61859726	61876766	D	interleukin 17 receptor E [Source:HGNC Symbol;Acc:HGNC:18439]
ENSCJAG00000011715	KNOWN_BY_PROJECTION	protein_coding	SNAP47	chromosome:C_jacchus3.2.1:19:1:49578535:1	33189981	33211500	D	synaptosomal-associated protein, 47kDa [Source:HGNC Symbol;Acc:HGNC:30669]
ENSCJAG00000005908	KNOWN_BY_PROJECTION	protein_coding	KCNK16	chromosome:C_jacchus3.2.1:4:1:171630274:1	40368200	40376147	R	potassium channel, two pore domain subfamily K, member 16 [Source:HGNC Symbol;Acc:HGNC:14464]
ENSCJAG00000011705	KNOWN_BY_PROJECTION	protein_coding	PRSS38	chromosome:C_jacchus3.2.1:19:1:49578535:1	33260129	33283461	D	protease, serine, 38 [Source:HGNC Symbol;Acc:HGNC:29625]
ENSCJAG00000017494	NOVEL	pseudogene	ENSCJAG00000017494	chromosome:C_jacchus3.2.1:1:1:210400635:1	154810784	154811820	R	<no descrition>
ENSCJAG00000016369	KNOWN_BY_PROJECTION	protein_coding	TMEM102	chromosome:C_jacchus3.2.1:5:1:159171411:1	74435425	74437739	R	transmembrane protein 102 [Source:HGNC Symbol;Acc:HGNC:26722]
ENSCJAG00000000924	NOVEL	protein_coding	ENSCJAG00000000924	chromosome:C_jacchus3.2.1:10:1:132174527:1	29591891	29592867	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001568}  [Source:UniProtKB/TrEMBL;Acc:F6ZFD3]
ENSCJAG00000000923	NOVEL	pseudogene	ENSCJAG00000000923	chromosome:C_jacchus3.2.1:10:1:132174527:1	29695911	29696704	D	<no descrition>
ENSCJAG00000008594	KNOWN_BY_PROJECTION	protein_coding	KIF11	chromosome:C_jacchus3.2.1:12:1:121768101:1	79441512	79499390	D	kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]
ENSCJAG00000016650	KNOWN_BY_PROJECTION	protein_coding	WNT3A	chromosome:C_jacchus3.2.1:19:1:49578535:1	33386090	33444134	D	wingless-type MMTV integration site family, member 3A [Source:HGNC Symbol;Acc:HGNC:15983]
ENSCJAG00000000886	KNOWN	protein_coding	ARPP19	chromosome:C_jacchus3.2.1:10:1:132174527:1	29746347	29769913	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001511}; cAMP-regulated phosphoprotein 19 {ECO:0000313|EMBL:JAB02125.1}  [Source:UniProtKB/TrEMBL;Acc:F7AF76]
ENSCJAG00000017495	KNOWN_BY_PROJECTION	protein_coding	KIAA0368	chromosome:C_jacchus3.2.1:1:1:210400635:1	154832253	154952298	R	KIAA0368 [Source:HGNC Symbol;Acc:HGNC:29020]
ENSCJAG00000016391	KNOWN_BY_PROJECTION	protein_coding	C17orf74	chromosome:C_jacchus3.2.1:5:1:159171411:1	74447460	74449386	R	chromosome 17 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:27315]
ENSCJAG00000016399	KNOWN_BY_PROJECTION	protein_coding	SPEM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74450364	74453205	R	spermatid maturation 1 [Source:HGNC Symbol;Acc:HGNC:32429]
ENSCJAG00000000854	KNOWN_BY_PROJECTION	protein_coding	FAM214A	chromosome:C_jacchus3.2.1:10:1:132174527:1	29780795	29875304	R	family with sequence similarity 214, member A [Source:HGNC Symbol;Acc:HGNC:25609]
ENSCJAG00000032778	NOVEL	protein_coding	ENSCJAG00000032778	chromosome:C_jacchus3.2.1:1:1:210400635:1	154991646	154992537	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046146}  [Source:UniProtKB/TrEMBL;Acc:F6WDU5]
ENSCJAG00000017561	KNOWN_BY_PROJECTION	protein_coding	ZIM2	chromosome:C_jacchus3.2.1:1:1:210400635:1	154998965	155010532	D	zinc finger, imprinted 2 [Source:HGNC Symbol;Acc:HGNC:12875]
ENSCJAG00000016671	KNOWN	protein_coding	ENSCJAG00000016671	chromosome:C_jacchus3.2.1:19:1:49578535:1	33464519	33479977	D	ADP-ribosylation factor 1 {ECO:0000313|EMBL:JAB19780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030757}  [Source:UniProtKB/TrEMBL;Acc:F6W8R7]
ENSCJAG00000010286	KNOWN	protein_coding	C2ORF73	chromosome:C_jacchus3.2.1:14:1:108792865:1	53176729	53203441	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018945}; Uncharacterized protein C2orf73 {ECO:0000313|EMBL:JAB17754.1}  [Source:UniProtKB/TrEMBL;Acc:F7GVC8]
ENSCJAG00000017571	KNOWN	protein_coding	PTGR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	155031186	155074337	R	Prostaglandin reductase 1 isoform 1 {ECO:0000313|EMBL:JAB16506.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032386}  [Source:UniProtKB/TrEMBL;Acc:F7FJC4]
ENSCJAG00000010291	KNOWN	protein_coding	ACYP2	chromosome:C_jacchus3.2.1:14:1:108792865:1	53228631	53434750	R	Acylphosphatase {ECO:0000256|RuleBase:RU000553}  [Source:UniProtKB/TrEMBL;Acc:F7GV91]
ENSCJAG00000010296	NOVEL	pseudogene	ENSCJAG00000010296	chromosome:C_jacchus3.2.1:14:1:108792865:1	53524342	53524889	D	<no descrition>
ENSCJAG00000002740	KNOWN_BY_PROJECTION	protein_coding	METAP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	85495640	85540345	D	methionyl aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:16672]
ENSCJAG00000037786	KNOWN	protein_coding	C5H17ORF61	chromosome:C_jacchus3.2.1:5:1:159171411:1	74470901	74472140	D	UPF0451 protein C17orf61 {ECO:0000313|EMBL:JAB23428.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030185}  [Source:UniProtKB/TrEMBL;Acc:F6V825]
ENSCJAG00000020100	KNOWN	protein_coding	SPI1	chromosome:C_jacchus3.2.1:11:1:130397257:1	110635867	110660546	R	Transcription factor PU.1 isoform 1 {ECO:0000313|EMBL:JAB25207.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037356}  [Source:UniProtKB/TrEMBL;Acc:F6ZGG7]
ENSCJAG00000016410	KNOWN_BY_PROJECTION	protein_coding	TMEM256-PLSCR3	chromosome:C_jacchus3.2.1:5:1:159171411:1	74470905	74488302	D	TMEM256-PLSCR3 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:HGNC:49186]
ENSCJAG00000014612	NOVEL	pseudogene	ENSCJAG00000014612	chromosome:C_jacchus3.2.1:3:1:190850796:1	124011757	124012162	D	<no descrition>
ENSCJAG00000020101	KNOWN_BY_PROJECTION	protein_coding	SLC39A13	chromosome:C_jacchus3.2.1:11:1:130397257:1	110690539	110696258	D	solute carrier family 39 (zinc transporter), member 13 [Source:HGNC Symbol;Acc:HGNC:20859]
ENSCJAG00000014618	KNOWN_BY_PROJECTION	protein_coding	IGJ	chromosome:C_jacchus3.2.1:3:1:190850796:1	124031026	124134790	D	immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides [Source:HGNC Symbol;Acc:HGNC:5713]
ENSCJAG00000016438	KNOWN_BY_PROJECTION	protein_coding	TNK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74489139	74495754	R	tyrosine kinase, non-receptor, 1 [Source:HGNC Symbol;Acc:HGNC:11940]
ENSCJAG00000014627	NOVEL	protein_coding	ENAM	chromosome:C_jacchus3.2.1:3:1:190850796:1	124068247	124084897	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026926}  [Source:UniProtKB/TrEMBL;Acc:F7HPL6]
ENSCJAG00000017584	KNOWN	protein_coding	GNG10	chromosome:C_jacchus3.2.1:1:1:210400635:1	155106976	155143551	D	Callithrix jacchus DnaJ (Hsp40) homolog, subfamily C , member 25 (DNAJC25), mRNA. [Source:RefSeq mRNA;Acc:NM_001204974]
ENSCJAG00000016445	KNOWN_BY_PROJECTION	protein_coding	TMEM95	chromosome:C_jacchus3.2.1:5:1:159171411:1	74510464	74511967	R	transmembrane protein 95 [Source:HGNC Symbol;Acc:HGNC:27898]
ENSCJAG00000016222	KNOWN_BY_PROJECTION	protein_coding	IL17RC	chromosome:C_jacchus3.2.1:15:1:98464013:1	61877463	61889920	D	interleukin 17 receptor C [Source:HGNC Symbol;Acc:HGNC:18358]
ENSCJAG00000008627	KNOWN	protein_coding	HHEX	chromosome:C_jacchus3.2.1:12:1:121768101:1	79529186	79535206	D	Hematopoietically-expressed homeobox protein HHEX {ECO:0000313|EMBL:JAB02540.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015881}  [Source:UniProtKB/TrEMBL;Acc:F7G3X7]
ENSCJAG00000014634	KNOWN_BY_PROJECTION	protein_coding	AMBN	chromosome:C_jacchus3.2.1:3:1:190850796:1	124102636	124117020	R	ameloblastin (enamel matrix protein) [Source:HGNC Symbol;Acc:HGNC:452]
ENSCJAG00000020108	KNOWN_BY_PROJECTION	protein_coding	PSMC3	chromosome:C_jacchus3.2.1:11:1:130397257:1	110700214	110707985	R	proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Source:HGNC Symbol;Acc:HGNC:9549]
ENSCJAG00000016450	KNOWN	protein_coding	ACAP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74515488	74605340	R	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 {ECO:0000313|EMBL:JAB03010.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025585}  [Source:UniProtKB/TrEMBL;Acc:F6VZY8]
ENSCJAG00000002734	KNOWN_BY_PROJECTION	protein_coding	USP44	chromosome:C_jacchus3.2.1:9:1:124281992:1	85542123	85577709	R	ubiquitin specific peptidase 44 [Source:HGNC Symbol;Acc:HGNC:20064]
ENSCJAG00000010300	KNOWN	protein_coding	PSME4	chromosome:C_jacchus3.2.1:14:1:108792865:1	53583031	53693295	D	Proteasome activator complex subunit 4 {ECO:0000313|EMBL:JAB06942.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019320}  [Source:UniProtKB/TrEMBL;Acc:F6RKL5]
ENSCJAG00000016240	KNOWN	protein_coding	CRELD1	chromosome:C_jacchus3.2.1:15:1:98464013:1	61890106	61900042	D	Cysteine-rich with EGF-like domain protein 1 isoform 2 {ECO:0000313|EMBL:JAB04120.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029912}  [Source:UniProtKB/TrEMBL;Acc:F7IC05]
ENSCJAG00000016721	KNOWN_BY_PROJECTION	protein_coding	C1orf35	chromosome:C_jacchus3.2.1:19:1:49578535:1	33481032	33483530	R	chromosome 1 open reading frame 35 [Source:HGNC Symbol;Acc:HGNC:19032]
ENSCJAG00000016730	KNOWN	protein_coding	MRPL55	chromosome:C_jacchus3.2.1:19:1:49578535:1	33488084	33687237	R	39S ribosomal protein L55, mitochondrial isoform a {ECO:0000313|EMBL:JAB04780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030779}  [Source:UniProtKB/TrEMBL;Acc:F6V4D5]
ENSCJAG00000016253	KNOWN_BY_PROJECTION	protein_coding	PRRT3	chromosome:C_jacchus3.2.1:15:1:98464013:1	61900180	61908351	R	proline-rich transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:26591]
ENSCJAG00000016738	KNOWN_BY_PROJECTION	protein_coding	GUK1	chromosome:C_jacchus3.2.1:19:1:49578535:1	33509895	33518481	D	guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]
ENSCJAG00000037305	KNOWN	protein_coding	EMC3	chromosome:C_jacchus3.2.1:15:1:98464013:1	61920544	61939510	R	ER membrane protein complex subunit 3 {ECO:0000313|EMBL:JAB05046.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029981}  [Source:UniProtKB/TrEMBL;Acc:F7I2L0]
ENSCJAG00000017593	KNOWN_BY_PROJECTION	protein_coding	C9orf84	chromosome:C_jacchus3.2.1:1:1:210400635:1	155152674	155267579	R	chromosome 9 open reading frame 84 [Source:HGNC Symbol;Acc:HGNC:26535]
ENSCJAG00000032243	NOVEL	protein_coding	ENSCJAG00000032243	chromosome:C_jacchus3.2.1:5:1:159171411:1	74533569	74537174	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050741}  [Source:UniProtKB/TrEMBL;Acc:F7DNY6]
ENSCJAG00000008643	KNOWN_BY_PROJECTION	protein_coding	EXOC6	chromosome:C_jacchus3.2.1:12:1:121768101:1	79656435	79906264	D	exocyst complex component 6 [Source:HGNC Symbol;Acc:HGNC:23196]
ENSCJAG00000016746	KNOWN_BY_PROJECTION	protein_coding	GJC2	chromosome:C_jacchus3.2.1:19:1:49578535:1	33520492	33530156	D	gap junction protein, gamma 2, 47kDa [Source:HGNC Symbol;Acc:HGNC:17494]
ENSCJAG00000016749	KNOWN	protein_coding	IBA57	chromosome:C_jacchus3.2.1:19:1:49578535:1	33535777	33545446	D	Putative transferase CAF17, mitochondrial {ECO:0000313|EMBL:JAB45028.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030814}  [Source:UniProtKB/TrEMBL;Acc:F7C4S5]
ENSCJAG00000016494	NOVEL	protein_coding	ENSCJAG00000016494	chromosome:C_jacchus3.2.1:5:1:159171411:1	74538294	74552427	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030443}  [Source:UniProtKB/TrEMBL;Acc:F7B8T4]
ENSCJAG00000005922	KNOWN_BY_PROJECTION	protein_coding	KIF6	chromosome:C_jacchus3.2.1:4:1:171630274:1	40389744	40805025	R	kinesin family member 6 [Source:HGNC Symbol;Acc:HGNC:21202]
ENSCJAG00000020127	NOVEL	protein_coding	ENSCJAG00000020127	chromosome:C_jacchus3.2.1:11:1:130397257:1	110721041	110721941	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037408}  [Source:UniProtKB/TrEMBL;Acc:F6W0Y4]
ENSCJAG00000000848	KNOWN_BY_PROJECTION	protein_coding	ONECUT1	chromosome:C_jacchus3.2.1:10:1:132174527:1	29950242	29996059	R	one cut homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8138]
ENSCJAG00000020129	KNOWN	protein_coding	RAPSN	chromosome:C_jacchus3.2.1:11:1:130397257:1	110723707	110733696	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037421}  [Source:UniProtKB/TrEMBL;Acc:F6VG15]
ENSCJAG00000016294	KNOWN_BY_PROJECTION	protein_coding	FANCD2	chromosome:C_jacchus3.2.1:15:1:98464013:1	61939570	62017597	D	Fanconi anemia, complementation group D2 [Source:HGNC Symbol;Acc:HGNC:3585]
ENSCJAG00000002709	KNOWN	protein_coding	NTN4	chromosome:C_jacchus3.2.1:9:1:124281992:1	85695579	85827426	R	Netrin-4 {ECO:0000313|EMBL:JAB04733.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004944}  [Source:UniProtKB/TrEMBL;Acc:F6UDK1]
ENSCJAG00000000823	KNOWN_BY_PROJECTION	protein_coding	WDR72	chromosome:C_jacchus3.2.1:10:1:132174527:1	30748832	30933416	R	WD repeat domain 72 [Source:HGNC Symbol;Acc:HGNC:26790]
ENSCJAG00000032746	KNOWN_BY_PROJECTION	protein_coding	OBSCN	chromosome:C_jacchus3.2.1:19:1:49578535:1	33580882	33745545	D	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF [Source:HGNC Symbol;Acc:HGNC:15719]
ENSCJAG00000014645	KNOWN_BY_PROJECTION	protein_coding	AMTN	chromosome:C_jacchus3.2.1:3:1:190850796:1	124183632	124198986	R	amelotin [Source:HGNC Symbol;Acc:HGNC:33188]
ENSCJAG00000010452	KNOWN_BY_PROJECTION	protein_coding	DAAM2	chromosome:C_jacchus3.2.1:4:1:171630274:1	40940137	40998975	D	dishevelled associated activator of morphogenesis 2 [Source:HGNC Symbol;Acc:HGNC:18143]
ENSCJAG00000014653	KNOWN_BY_PROJECTION	protein_coding	MUC7	chromosome:C_jacchus3.2.1:3:1:190850796:1	124252203	124260430	R	mucin 7, secreted [Source:HGNC Symbol;Acc:HGNC:7518]
ENSCJAG00000014310	KNOWN_BY_PROJECTION	protein_coding	PROL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	124350754	124365089	R	proline rich, lacrimal 1 [Source:HGNC Symbol;Acc:HGNC:17279]
ENSCJAG00000020133	KNOWN	protein_coding	CELF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	110752655	110841093	R	CUGBP Elav-like family member 1 isoform 1 {ECO:0000313|EMBL:JAB17797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037501}  [Source:UniProtKB/TrEMBL;Acc:F6YYB6]
ENSCJAG00000016375	NOVEL	protein_coding	ENSCJAG00000016375	chromosome:C_jacchus3.2.1:15:1:98464013:1	61947878	61949682	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030128}  [Source:UniProtKB/TrEMBL;Acc:F6WCA7]
ENSCJAG00000014305	KNOWN_BY_PROJECTION	protein_coding	SMR3A	chromosome:C_jacchus3.2.1:3:1:190850796:1	124413905	124420793	R	submaxillary gland androgen regulated protein 3A [Source:HGNC Symbol;Acc:HGNC:19216]
ENSCJAG00000016380	KNOWN_BY_PROJECTION	protein_coding	FANCD2OS	chromosome:C_jacchus3.2.1:15:1:98464013:1	62020184	62025173	R	FANCD2 opposite strand [Source:HGNC Symbol;Acc:HGNC:28623]
ENSCJAG00000014302	KNOWN_BY_PROJECTION	protein_coding	CABS1	chromosome:C_jacchus3.2.1:3:1:190850796:1	124454513	124456669	R	calcium-binding protein, spermatid-specific 1 [Source:HGNC Symbol;Acc:HGNC:30710]
ENSCJAG00000023079	KNOWN	protein_coding	ENSCJAG00000023079	chromosome:C_jacchus3.2.1:15:1:98464013:1	62032507	62045871	D	Protein BRICK1 {ECO:0000313|EMBL:JAB05101.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041612}  [Source:UniProtKB/TrEMBL;Acc:F7DVE2]
ENSCJAG00000002731	NOVEL	protein_coding	ENSCJAG00000002731	chromosome:C_jacchus3.2.1:9:1:124281992:1	85710302	85711056	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004956}  [Source:UniProtKB/TrEMBL;Acc:F6UCY5]
ENSCJAG00000016382	NOVEL	protein_coding	ENSCJAG00000016382	chromosome:C_jacchus3.2.1:15:1:98464013:1	62032534	62045871	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030148}  [Source:UniProtKB/TrEMBL;Acc:F6VT17]
ENSCJAG00000034738	NOVEL	protein_coding	ENSCJAG00000034738	chromosome:C_jacchus3.2.1:3:1:190850796:1	124470778	124474499	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047149}  [Source:UniProtKB/TrEMBL;Acc:F7HUN2]
ENSCJAG00000002705	KNOWN	protein_coding	SNRPF	chromosome:C_jacchus3.2.1:9:1:124281992:1	85895667	85902983	D	Small nuclear ribonucleoprotein F {ECO:0000256|PIRNR:PIRNR006609}  [Source:UniProtKB/TrEMBL;Acc:F6UZL4]
ENSCJAG00000016393	NOVEL	protein_coding	ENSCJAG00000016393	chromosome:C_jacchus3.2.1:15:1:98464013:1	62056053	62066062	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030168}  [Source:UniProtKB/TrEMBL;Acc:F6V8W7]
ENSCJAG00000014297	KNOWN_BY_PROJECTION	protein_coding	CSN3	chromosome:C_jacchus3.2.1:3:1:190850796:1	124550335	124555170	R	casein kappa [Source:HGNC Symbol;Acc:HGNC:2446]
ENSCJAG00000014288	KNOWN_BY_PROJECTION	protein_coding	FDCSP	chromosome:C_jacchus3.2.1:3:1:190850796:1	124563560	124571772	R	follicular dendritic cell secreted protein [Source:HGNC Symbol;Acc:HGNC:19215]
ENSCJAG00000016405	KNOWN	protein_coding	IRAK2	chromosome:C_jacchus3.2.1:15:1:98464013:1	62078366	62154331	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030199}  [Source:UniProtKB/TrEMBL;Acc:F6UMC2]
ENSCJAG00000002685	KNOWN_BY_PROJECTION	protein_coding	CCDC38	chromosome:C_jacchus3.2.1:9:1:124281992:1	85903647	85958433	R	coiled-coil domain containing 38 [Source:HGNC Symbol;Acc:HGNC:26843]
ENSCJAG00000036993	KNOWN	protein_coding	GPS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74549042	74557531	D	G protein pathway suppressor 2 {ECO:0000313|EMBL:JAB07042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049635}  [Source:UniProtKB/TrEMBL;Acc:F6ZWR6]
ENSCJAG00000000796	KNOWN_BY_PROJECTION	protein_coding	UNC13C	chromosome:C_jacchus3.2.1:10:1:132174527:1	31218529	31857986	D	unc-13 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:23149]
ENSCJAG00000017653	KNOWN	protein_coding	UGCG	chromosome:C_jacchus3.2.1:1:1:210400635:1	155366741	155408883	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032553}  [Source:UniProtKB/TrEMBL;Acc:F7G9J0]
ENSCJAG00000014273	KNOWN_BY_PROJECTION	protein_coding	ODAM	chromosome:C_jacchus3.2.1:3:1:190850796:1	124583229	124591278	R	odontogenic, ameloblast asssociated [Source:HGNC Symbol;Acc:HGNC:26043]
ENSCJAG00000008756	NOVEL	pseudogene	ENSCJAG00000008756	chromosome:C_jacchus3.2.1:12:1:121768101:1	79897239	79899040	R	<no descrition>
ENSCJAG00000016416	NOVEL	protein_coding	ENSCJAG00000016416	chromosome:C_jacchus3.2.1:15:1:98464013:1	62159017	62205974	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030216}  [Source:UniProtKB/TrEMBL;Acc:F7BSF4]
ENSCJAG00000034512	NOVEL	protein_coding	ENSCJAG00000034512	chromosome:C_jacchus3.2.1:3:1:190850796:1	124638325	124654297	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050297}  [Source:UniProtKB/TrEMBL;Acc:F7EKD7]
ENSCJAG00000002672	KNOWN_BY_PROJECTION	protein_coding	AMDHD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	85965865	85991507	D	amidohydrolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28577]
ENSCJAG00000016754	KNOWN_BY_PROJECTION	protein_coding	C1orf145	chromosome:C_jacchus3.2.1:19:1:49578535:1	33581769	33583037	R	chromosome 1 open reading frame 145 [Source:HGNC Symbol;Acc:HGNC:32047]
ENSCJAG00000016757	KNOWN_BY_PROJECTION	protein_coding	TRIM11	chromosome:C_jacchus3.2.1:19:1:49578535:1	33756683	33772987	R	tripartite motif containing 11 [Source:HGNC Symbol;Acc:HGNC:16281]
ENSCJAG00000010478	KNOWN	protein_coding	ENSCJAG00000010478	chromosome:C_jacchus3.2.1:14:1:108792865:1	53706142	53882252	D	Callithrix jacchus ankyrin repeat and SOCS box containing 3 (ASB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205041]
ENSCJAG00000008762	KNOWN_BY_PROJECTION	protein_coding	CYP26C1	chromosome:C_jacchus3.2.1:12:1:121768101:1	79907589	79916985	D	cytochrome P450, family 26, subfamily C, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20577]
ENSCJAG00000017674	KNOWN_BY_PROJECTION	protein_coding	SUSD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	155525264	155673967	R	sushi domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25413]
ENSCJAG00000014268	NOVEL	protein_coding	ENSCJAG00000014268	chromosome:C_jacchus3.2.1:3:1:190850796:1	124684475	124700115	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026237}  [Source:UniProtKB/TrEMBL;Acc:F7HK16]
ENSCJAG00000016765	KNOWN_BY_PROJECTION	protein_coding	TRIM17	chromosome:C_jacchus3.2.1:19:1:49578535:1	33775043	33785567	R	tripartite motif containing 17 [Source:HGNC Symbol;Acc:HGNC:13430]
ENSCJAG00000014257	NOVEL	protein_coding	ENSCJAG00000014257	chromosome:C_jacchus3.2.1:3:1:190850796:1	124736312	124744019	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026226}  [Source:UniProtKB/TrEMBL;Acc:F7HQI8]
ENSCJAG00000016424	KNOWN	protein_coding	GHRL	chromosome:C_jacchus3.2.1:15:1:98464013:1	62210550	62218063	R	Appetite-regulating hormone isoform 1 preproprotein {ECO:0000313|EMBL:JAB12142.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030228}  [Source:UniProtKB/TrEMBL;Acc:F7BAW5]
ENSCJAG00000016779	KNOWN_BY_PROJECTION	protein_coding	RNF187	chromosome:C_jacchus3.2.1:19:1:49578535:1	33829670	33834543	D	ring finger protein 187 [Source:HGNC Symbol;Acc:HGNC:27146]
ENSCJAG00000008795	KNOWN_BY_PROJECTION	protein_coding	CYP26A1	chromosome:C_jacchus3.2.1:12:1:121768101:1	79921093	79924687	D	cytochrome P450, family 26, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2603]
ENSCJAG00000016780	NOVEL	protein_coding	ENSCJAG00000016780	chromosome:C_jacchus3.2.1:19:1:49578535:1	33854103	33863128	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030872}  [Source:UniProtKB/TrEMBL;Acc:F7A4G2]
ENSCJAG00000010427	NOVEL	protein_coding	ENSCJAG00000010427	chromosome:C_jacchus3.2.1:4:1:171630274:1	40996597	41036588	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045342}  [Source:UniProtKB/TrEMBL;Acc:F6SWG8]
ENSCJAG00000014255	KNOWN_BY_PROJECTION	protein_coding	CSN2	chromosome:C_jacchus3.2.1:3:1:190850796:1	124775748	124779477	D	casein beta [Source:HGNC Symbol;Acc:HGNC:2447]
ENSCJAG00000014246	KNOWN_BY_PROJECTION	protein_coding	CSN1S1	chromosome:C_jacchus3.2.1:3:1:190850796:1	124799538	124819840	R	casein alpha s1 [Source:HGNC Symbol;Acc:HGNC:2445]
ENSCJAG00000016439	KNOWN_BY_PROJECTION	protein_coding	SEC13	chromosome:C_jacchus3.2.1:15:1:98464013:1	62223023	62246950	R	SEC13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:10697]
ENSCJAG00000010519	NOVEL	pseudogene	ENSCJAG00000010519	chromosome:C_jacchus3.2.1:14:1:108792865:1	53711098	53712718	D	<no descrition>
ENSCJAG00000020163	KNOWN_BY_PROJECTION	protein_coding	PTPMT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	110854300	110863317	D	protein tyrosine phosphatase, mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:26965]
ENSCJAG00000016790	KNOWN_BY_PROJECTION	protein_coding	AHCTF1	chromosome:C_jacchus3.2.1:19:1:49578535:1	33919879	34003455	D	AT hook containing transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:24618]
ENSCJAG00000016455	KNOWN_BY_PROJECTION	protein_coding	ATP2B2	chromosome:C_jacchus3.2.1:15:1:98464013:1	62254826	62382402	R	ATPase, Ca++ transporting, plasma membrane 2 [Source:HGNC Symbol;Acc:HGNC:815]
ENSCJAG00000020173	KNOWN_BY_PROJECTION	protein_coding	KBTBD4	chromosome:C_jacchus3.2.1:11:1:130397257:1	110863426	110870838	R	kelch repeat and BTB (POZ) domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23761]
ENSCJAG00000020194	KNOWN_BY_PROJECTION	protein_coding	NDUFS3	chromosome:C_jacchus3.2.1:11:1:130397257:1	110870879	110876866	D	NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:HGNC:7710]
ENSCJAG00000016581	KNOWN_BY_PROJECTION	protein_coding	YBX2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74578174	74584140	D	Y box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948]
ENSCJAG00000020211	KNOWN	protein_coding	C1QTNF4	chromosome:C_jacchus3.2.1:11:1:130397257:1	110881108	110885567	R	Complement C1q tumor necrosis factor-related protein 4 {ECO:0000313|EMBL:JAB18438.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042054}  [Source:UniProtKB/TrEMBL;Acc:F6RHP2]
ENSCJAG00000010521	KNOWN	protein_coding	ERLEC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	53739108	53773182	R	Endoplasmic reticulum lectin 1 isoform 1 {ECO:0000313|EMBL:JAB07633.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019533}  [Source:UniProtKB/TrEMBL;Acc:F6RIB8]
ENSCJAG00000016541	KNOWN_BY_PROJECTION	protein_coding	SLC6A11	chromosome:C_jacchus3.2.1:15:1:98464013:1	62770641	62891541	D	solute carrier family 6 (neurotransmitter transporter), member 11 [Source:HGNC Symbol;Acc:HGNC:11044]
ENSCJAG00000002643	KNOWN	protein_coding	HAL	chromosome:C_jacchus3.2.1:9:1:124281992:1	85998489	86023247	R	Histidine ammonia-lyase {ECO:0000256|RuleBase:RU004479}  [Source:UniProtKB/TrEMBL;Acc:F7IJA0]
ENSCJAG00000016587	KNOWN_BY_PROJECTION	protein_coding	SLC2A4	chromosome:C_jacchus3.2.1:5:1:159171411:1	74585494	74590731	R	solute carrier family 2 (facilitated glucose transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11009]
ENSCJAG00000020213	KNOWN	protein_coding	MTCH2	chromosome:C_jacchus3.2.1:11:1:130397257:1	110910851	110939677	R	Mitochondrial carrier homolog 2 {ECO:0000313|EMBL:JAB10148.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037597}  [Source:UniProtKB/TrEMBL;Acc:F6VE72]
ENSCJAG00000016551	KNOWN	protein_coding	SLC6A1	chromosome:C_jacchus3.2.1:15:1:98464013:1	62947488	62990861	D	Transporter {ECO:0000256|RuleBase:RU003732}  [Source:UniProtKB/TrEMBL;Acc:F6Z7L2]
ENSCJAG00000010411	KNOWN	protein_coding	LRFN2	chromosome:C_jacchus3.2.1:4:1:171630274:1	41522659	41730394	R	Leucine-rich repeat and fibronectin type-III domain-containing protein 2 {ECO:0000313|EMBL:JAB14760.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019197}  [Source:UniProtKB/TrEMBL;Acc:F6Q4N8]
ENSCJAG00000034031	NOVEL	protein_coding	ENSCJAG00000034031	chromosome:C_jacchus3.2.1:19:1:49578535:1	34060513	34064770	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042391}  [Source:UniProtKB/TrEMBL;Acc:F6UJ83]
ENSCJAG00000004044	KNOWN_BY_PROJECTION	protein_coding	UNC5CL	chromosome:C_jacchus3.2.1:4:1:171630274:1	42201668	42208065	R	unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
ENSCJAG00000004055	KNOWN_BY_PROJECTION	protein_coding	TSPO2	chromosome:C_jacchus3.2.1:4:1:171630274:1	42215779	42217604	D	translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
ENSCJAG00000016806	KNOWN	protein_coding	SCCPDH	chromosome:C_jacchus3.2.1:19:1:49578535:1	34074485	34107232	R	Saccharopine dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:JAB44435.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030946}  [Source:UniProtKB/TrEMBL;Acc:F6WRC3]
ENSCJAG00000004063	KNOWN_BY_PROJECTION	protein_coding	APOBEC2	chromosome:C_jacchus3.2.1:4:1:171630274:1	42226505	42238501	D	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 [Source:HGNC Symbol;Acc:HGNC:605]
ENSCJAG00000017686	KNOWN_BY_PROJECTION	protein_coding	PTBP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	155719106	155831504	R	polypyrimidine tract binding protein 3 [Source:HGNC Symbol;Acc:HGNC:10253]
ENSCJAG00000016578	NOVEL	protein_coding	ENSCJAG00000016578	chromosome:C_jacchus3.2.1:15:1:98464013:1	63031124	63037007	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030508}  [Source:UniProtKB/TrEMBL;Acc:F6YP69]
ENSCJAG00000014226	KNOWN_BY_PROJECTION	protein_coding	SULT1E1	chromosome:C_jacchus3.2.1:3:1:190850796:1	124886508	124904022	D	sulfotransferase family 1E, estrogen-preferring, member 1 [Source:HGNC Symbol;Acc:HGNC:11377]
ENSCJAG00000000795	NOVEL	protein_coding	ENSCJAG00000000795	chromosome:C_jacchus3.2.1:10:1:132174527:1	32466992	32483656	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041704}  [Source:UniProtKB/TrEMBL;Acc:F7GUN7]
ENSCJAG00000016622	KNOWN_BY_PROJECTION	protein_coding	CLDN7	chromosome:C_jacchus3.2.1:5:1:159171411:1	74606274	74610299	D	claudin 7 [Source:HGNC Symbol;Acc:HGNC:2049]
ENSCJAG00000023080	KNOWN	protein_coding	HRH1	chromosome:C_jacchus3.2.1:15:1:98464013:1	63121924	63260744	D	Histamine H1 receptor {ECO:0000313|EMBL:JAB21249.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041613}  [Source:UniProtKB/TrEMBL;Acc:F7DVD0]
ENSCJAG00000010600	KNOWN_BY_PROJECTION	protein_coding	CHAC2	chromosome:C_jacchus3.2.1:14:1:108792865:1	53791650	53803351	R	ChaC, cation transport regulator homolog 2 (E. coli) [Source:HGNC Symbol;Acc:HGNC:32363]
ENSCJAG00000016633	KNOWN_BY_PROJECTION	protein_coding	ELP5	chromosome:C_jacchus3.2.1:5:1:159171411:1	74611561	74617564	R	elongator acetyltransferase complex subunit 5 [Source:HGNC Symbol;Acc:HGNC:30617]
ENSCJAG00000004066	KNOWN	protein_coding	OARD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	42240906	42247641	R	O-acetyl-ADP-ribose deacetylase C6orf130 {ECO:0000313|EMBL:JAB03289.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007395}  [Source:UniProtKB/TrEMBL;Acc:F6QE50]
ENSCJAG00000016829	NOVEL	pseudogene	ENSCJAG00000016829	chromosome:C_jacchus3.2.1:19:1:49578535:1	34099319	34100149	D	<no descrition>
ENSCJAG00000010608	NOVEL	protein_coding	ENSCJAG00000010608	chromosome:C_jacchus3.2.1:14:1:108792865:1	54875698	54877971	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048944}  [Source:UniProtKB/TrEMBL;Acc:F6QHS2]
ENSCJAG00000016834	KNOWN	protein_coding	CNST	chromosome:C_jacchus3.2.1:19:1:49578535:1	34149004	34217607	R	Consortin isoform 1 {ECO:0000313|EMBL:JAB16147.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031001}  [Source:UniProtKB/TrEMBL;Acc:F7I3E7]
ENSCJAG00000004074	KNOWN	protein_coding	NFYA	chromosome:C_jacchus3.2.1:4:1:171630274:1	42248135	42274087	D	Nuclear transcription factor Y subunit alpha isoform 1 {ECO:0000313|EMBL:JAB09530.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007427}  [Source:UniProtKB/TrEMBL;Acc:F6PHK9]
ENSCJAG00000016644	KNOWN	protein_coding	CTDNEP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74617851	74626403	D	CTD nuclear envelope phosphatase 1 {ECO:0000313|EMBL:JAB29058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030638}  [Source:UniProtKB/TrEMBL;Acc:F7BPZ6]
ENSCJAG00000016583	KNOWN_BY_PROJECTION	protein_coding	ATG7	chromosome:C_jacchus3.2.1:15:1:98464013:1	63268475	63542145	D	autophagy related 7 [Source:HGNC Symbol;Acc:HGNC:16935]
ENSCJAG00000010610	NOVEL	protein_coding	ENSCJAG00000010610	chromosome:C_jacchus3.2.1:14:1:108792865:1	55222017	55223979	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019555}  [Source:UniProtKB/TrEMBL;Acc:F6QXE5]
ENSCJAG00000010618	NOVEL	pseudogene	ENSCJAG00000010618	chromosome:C_jacchus3.2.1:14:1:108792865:1	56443593	56444512	D	<no descrition>
ENSCJAG00000010624	NOVEL	protein_coding	ENSCJAG00000010624	chromosome:C_jacchus3.2.1:14:1:108792865:1	56587405	56590970	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019571}  [Source:UniProtKB/TrEMBL;Acc:F6QCS8]
ENSCJAG00000017708	KNOWN	protein_coding	HSDL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	155866825	155957057	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032667}  [Source:UniProtKB/TrEMBL;Acc:F7D096]
ENSCJAG00000000782	KNOWN	protein_coding	RAB27A	chromosome:C_jacchus3.2.1:10:1:132174527:1	32489701	32573181	R	Ras-related protein Rab-27A {ECO:0000313|EMBL:JAB03937.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001345}  [Source:UniProtKB/TrEMBL;Acc:F7C0F9]
ENSCJAG00000016845	KNOWN_BY_PROJECTION	protein_coding	TFB2M	chromosome:C_jacchus3.2.1:19:1:49578535:1	34242084	34267465	D	transcription factor B2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:18559]
ENSCJAG00000010629	NOVEL	pseudogene	ENSCJAG00000010629	chromosome:C_jacchus3.2.1:14:1:108792865:1	56660479	56661130	D	<no descrition>
ENSCJAG00000010631	KNOWN_BY_PROJECTION	protein_coding	NRXN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	57057104	57250782	D	neurexin 1 [Source:HGNC Symbol;Acc:HGNC:8008]
ENSCJAG00000008827	KNOWN_BY_PROJECTION	protein_coding	MYOF	chromosome:C_jacchus3.2.1:12:1:121768101:1	80001840	80343623	R	myoferlin [Source:HGNC Symbol;Acc:HGNC:3656]
ENSCJAG00000016856	KNOWN_BY_PROJECTION	protein_coding	SMYD3	chromosome:C_jacchus3.2.1:19:1:49578535:1	34285263	35058271	D	SET and MYND domain containing 3 [Source:HGNC Symbol;Acc:HGNC:15513]
ENSCJAG00000016655	KNOWN	protein_coding	GABARAP	chromosome:C_jacchus3.2.1:5:1:159171411:1	74627681	74629709	D	Gamma-aminobutyric acid receptor-associated protein {ECO:0000313|EMBL:JAB23960.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030659}  [Source:UniProtKB/TrEMBL;Acc:F7ANW4]
ENSCJAG00000016632	KNOWN	protein_coding	VGLL4	chromosome:C_jacchus3.2.1:15:1:98464013:1	63543211	63711335	R	Transcription cofactor vestigial-like protein 4 isoform b {ECO:0000313|EMBL:JAB14133.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049111}  [Source:UniProtKB/TrEMBL;Acc:F7C0Z8]
ENSCJAG00000032600	NOVEL	pseudogene	ENSCJAG00000032600	chromosome:C_jacchus3.2.1:19:1:49578535:1	34328946	34330069	D	<no descrition>
ENSCJAG00000002283	KNOWN_BY_PROJECTION	protein_coding	PIGB	chromosome:C_jacchus3.2.1:10:1:132174527:1	32585562	32628630	D	phosphatidylinositol glycan anchor biosynthesis, class B [Source:HGNC Symbol;Acc:HGNC:8959]
ENSCJAG00000020239	KNOWN_BY_PROJECTION	protein_coding	AGBL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	110948243	111010996	R	ATP/GTP binding protein-like 2 [Source:HGNC Symbol;Acc:HGNC:26296]
ENSCJAG00000016643	KNOWN_BY_PROJECTION	protein_coding	TAMM41	chromosome:C_jacchus3.2.1:15:1:98464013:1	63766662	63829406	R	TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25187]
ENSCJAG00000016866	KNOWN_BY_PROJECTION	protein_coding	KIF26B	chromosome:C_jacchus3.2.1:19:1:49578535:1	35126218	35742067	R	kinesin family member 26B [Source:HGNC Symbol;Acc:HGNC:25484]
ENSCJAG00000020254	KNOWN_BY_PROJECTION	protein_coding	FNBP4	chromosome:C_jacchus3.2.1:11:1:130397257:1	111012667	111069656	R	formin binding protein 4 [Source:HGNC Symbol;Acc:HGNC:19752]
ENSCJAG00000010638	KNOWN	protein_coding	ENSCJAG00000010638	chromosome:C_jacchus3.2.1:14:1:108792865:1	57374760	57820881	D	Neurexin-1-beta isoform beta {ECO:0000313|EMBL:JAB29042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042913}  [Source:UniProtKB/TrEMBL;Acc:F6WS78]
ENSCJAG00000020259	NOVEL	pseudogene	ENSCJAG00000020259	chromosome:C_jacchus3.2.1:11:1:130397257:1	111074724	111076045	D	<no descrition>
ENSCJAG00000031711	NOVEL	pseudogene	ENSCJAG00000031711	chromosome:C_jacchus3.2.1:14:1:108792865:1	57558517	57558800	R	<no descrition>
ENSCJAG00000016665	KNOWN_BY_PROJECTION	protein_coding	PHF23	chromosome:C_jacchus3.2.1:5:1:159171411:1	74630575	74636977	D	PHD finger protein 23 [Source:HGNC Symbol;Acc:HGNC:28428]
ENSCJAG00000016647	KNOWN_BY_PROJECTION	protein_coding	SYN2	chromosome:C_jacchus3.2.1:15:1:98464013:1	63946887	64147571	D	synapsin II [Source:HGNC Symbol;Acc:HGNC:11495]
ENSCJAG00000020260	KNOWN_BY_PROJECTION	protein_coding	NUP160	chromosome:C_jacchus3.2.1:11:1:130397257:1	111088726	111154486	R	nucleoporin 160kDa [Source:HGNC Symbol;Acc:HGNC:18017]
ENSCJAG00000016907	KNOWN	protein_coding	EFCAB2	chromosome:C_jacchus3.2.1:19:1:49578535:1	35773318	35895085	R	EF-hand calcium-binding domain-containing protein 2 isoform a {ECO:0000313|EMBL:JAB07137.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050618}  [Source:UniProtKB/TrEMBL;Acc:F7H3C2]
ENSCJAG00000016682	KNOWN	protein_coding	TIMP4	chromosome:C_jacchus3.2.1:15:1:98464013:1	64109694	64115846	R	Metalloproteinase inhibitor 4 {ECO:0000313|EMBL:JAB42694.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030702}  [Source:UniProtKB/TrEMBL;Acc:F6YN25]
ENSCJAG00000010640	KNOWN	protein_coding	FSHR	chromosome:C_jacchus3.2.1:14:1:108792865:1	58582368	58785397	D	Callithrix jacchus follicle stimulating hormone receptor (FSHR), mRNA. [Source:RefSeq mRNA;Acc:NM_001243140]
ENSCJAG00000014206	KNOWN_BY_PROJECTION	protein_coding	SULT1B1	chromosome:C_jacchus3.2.1:3:1:190850796:1	124973671	125011863	D	sulfotransferase family, cytosolic, 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:17845]
ENSCJAG00000016687	KNOWN_BY_PROJECTION	protein_coding	PPARG	chromosome:C_jacchus3.2.1:15:1:98464013:1	64245329	64390321	D	peroxisome proliferator-activated receptor gamma [Source:HGNC Symbol;Acc:HGNC:9236]
ENSCJAG00000014192	KNOWN_BY_PROJECTION	protein_coding	UGT2A2	chromosome:C_jacchus3.2.1:3:1:190850796:1	125065300	125104900	D	UDP glucuronosyltransferase 2 family, polypeptide A2 [Source:HGNC Symbol;Acc:HGNC:28183]
ENSCJAG00000016914	KNOWN	protein_coding	HNRNPU	chromosome:C_jacchus3.2.1:19:1:49578535:1	35987996	36000269	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031309}  [Source:UniProtKB/TrEMBL;Acc:F7I0Z2]
ENSCJAG00000033590	NOVEL	protein_coding	ENSCJAG00000033590	chromosome:C_jacchus3.2.1:1:1:210400635:1	155975014	155978142	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050929}  [Source:UniProtKB/TrEMBL;Acc:F6TYA0]
ENSCJAG00000031827	NOVEL	protein_coding	ENSCJAG00000031827	chromosome:C_jacchus3.2.1:4:1:171630274:1	42311605	42320453	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042279}  [Source:UniProtKB/TrEMBL;Acc:F7A8Q6]
ENSCJAG00000016737	KNOWN_BY_PROJECTION	protein_coding	RAF1	chromosome:C_jacchus3.2.1:15:1:98464013:1	64409981	64627742	R	Raf-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:9829]
ENSCJAG00000017732	KNOWN	protein_coding	KIAA1958	chromosome:C_jacchus3.2.1:1:1:210400635:1	155978031	156165345	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032692}; Uncharacterized protein KIAA1958 {ECO:0000313|EMBL:JAB12853.1}  [Source:UniProtKB/TrEMBL;Acc:F7HGL2]
ENSCJAG00000017735	KNOWN	protein_coding	INIP	chromosome:C_jacchus3.2.1:1:1:210400635:1	156164822	156195928	R	SOSS complex subunit C {ECO:0000313|EMBL:JAB03612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032714}  [Source:UniProtKB/TrEMBL;Acc:F7H151]
ENSCJAG00000004089	KNOWN	protein_coding	TREML1	chromosome:C_jacchus3.2.1:4:1:171630274:1	42331337	42336349	R	Trem-like transcript 1 protein isoform a {ECO:0000313|EMBL:JAB15567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007466}  [Source:UniProtKB/TrEMBL;Acc:F6TEY2]
ENSCJAG00000017741	KNOWN_BY_PROJECTION	protein_coding	SNX30	chromosome:C_jacchus3.2.1:1:1:210400635:1	156218800	156345690	D	sorting nexin family member 30 [Source:HGNC Symbol;Acc:HGNC:23685]
ENSCJAG00000016678	KNOWN_BY_PROJECTION	protein_coding	DVL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	74637760	74648752	D	dishevelled segment polarity protein 2 [Source:HGNC Symbol;Acc:HGNC:3086]
ENSCJAG00000016733	KNOWN_BY_PROJECTION	protein_coding	MKRN2	chromosome:C_jacchus3.2.1:15:1:98464013:1	64525232	64538075	D	makorin ring finger protein 2 [Source:HGNC Symbol;Acc:HGNC:7113]
ENSCJAG00000017757	KNOWN_BY_PROJECTION	protein_coding	SLC46A2	chromosome:C_jacchus3.2.1:1:1:210400635:1	156356432	156368155	R	solute carrier family 46, member 2 [Source:HGNC Symbol;Acc:HGNC:16055]
ENSCJAG00000004114	KNOWN	protein_coding	TREM2	chromosome:C_jacchus3.2.1:4:1:171630274:1	42342004	42346729	R	Triggering receptor expressed on myeloid cells 2 isoform 1 {ECO:0000313|EMBL:JAB22719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007482}  [Source:UniProtKB/TrEMBL;Acc:F6T3K6]
ENSCJAG00000031800	NOVEL	protein_coding	ENSCJAG00000031800	chromosome:C_jacchus3.2.1:1:1:210400635:1	156419248	156422760	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046421}  [Source:UniProtKB/TrEMBL;Acc:F7IQ19]
ENSCJAG00000031644	NOVEL	pseudogene	ENSCJAG00000031644	chromosome:C_jacchus3.2.1:11:1:130397257:1	111250346	111250703	R	<no descrition>
ENSCJAG00000016751	KNOWN_BY_PROJECTION	protein_coding	TMEM40	chromosome:C_jacchus3.2.1:15:1:98464013:1	64691950	64722168	R	transmembrane protein 40 [Source:HGNC Symbol;Acc:HGNC:25620]
ENSCJAG00000020595	KNOWN_BY_PROJECTION	protein_coding	PTPRJ	chromosome:C_jacchus3.2.1:11:1:130397257:1	111414057	111471826	D	protein tyrosine phosphatase, receptor type, J [Source:HGNC Symbol;Acc:HGNC:9673]
ENSCJAG00000013877	NOVEL	protein_coding	ENSCJAG00000013877	chromosome:C_jacchus3.2.1:3:1:190850796:1	125109980	125427979	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025533}  [Source:UniProtKB/TrEMBL;Acc:F6YXP7]
ENSCJAG00000017766	KNOWN_BY_PROJECTION	protein_coding	ZFP37	chromosome:C_jacchus3.2.1:1:1:210400635:1	156472956	156497193	R	ZFP37 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:12863]
ENSCJAG00000016770	KNOWN_BY_PROJECTION	protein_coding	CAND2	chromosome:C_jacchus3.2.1:15:1:98464013:1	64742191	64783377	D	cullin-associated and neddylation-dissociated 2 (putative) [Source:HGNC Symbol;Acc:HGNC:30689]
ENSCJAG00000002275	KNOWN	protein_coding	CCPG1	chromosome:C_jacchus3.2.1:10:1:132174527:1	32628238	32751006	R	Dyslexia susceptibility 1 candidate gene 1 protein isoform a {ECO:0000313|EMBL:JAB14992.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004083}  [Source:UniProtKB/TrEMBL;Acc:F6WBN5]
ENSCJAG00000016703	KNOWN_BY_PROJECTION	protein_coding	ACADVL	chromosome:C_jacchus3.2.1:5:1:159171411:1	74648858	74654671	R	acyl-CoA dehydrogenase, very long chain [Source:HGNC Symbol;Acc:HGNC:92]
ENSCJAG00000017776	KNOWN_BY_PROJECTION	protein_coding	SLC31A2	chromosome:C_jacchus3.2.1:1:1:210400635:1	156589719	156596956	D	solute carrier family 31 (copper transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11017]
ENSCJAG00000009237	NOVEL	pseudogene	ENSCJAG00000009237	chromosome:C_jacchus3.2.1:11:1:130397257:1	111507671	111508584	D	<no descrition>
ENSCJAG00000009228	KNOWN_BY_PROJECTION	protein_coding	OR4C3	chromosome:C_jacchus3.2.1:11:1:130397257:1	111562472	111563961	D	olfactory receptor, family 4, subfamily C, member 3 [Source:HGNC Symbol;Acc:HGNC:14697]
ENSCJAG00000009223	NOVEL	pseudogene	ENSCJAG00000009223	chromosome:C_jacchus3.2.1:11:1:130397257:1	111580179	111581092	R	<no descrition>
ENSCJAG00000016774	KNOWN_BY_PROJECTION	protein_coding	RPL32	chromosome:C_jacchus3.2.1:15:1:98464013:1	64786028	64792124	R	ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
ENSCJAG00000010673	NOVEL	protein_coding	ENSCJAG00000010673	chromosome:C_jacchus3.2.1:14:1:108792865:1	58830285	58831219	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019664}  [Source:UniProtKB/TrEMBL;Acc:F6T276]
ENSCJAG00000017793	KNOWN	protein_coding	FKBP15	chromosome:C_jacchus3.2.1:1:1:210400635:1	156599832	156652858	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}  [Source:UniProtKB/TrEMBL;Acc:F7H5V1]
ENSCJAG00000010733	KNOWN	protein_coding	LHCGR	chromosome:C_jacchus3.2.1:14:1:108792865:1	59027415	59071367	D	Lutropin-choriogonadotropic hormone receptor  [Source:UniProtKB/Swiss-Prot;Acc:O02721]
ENSCJAG00000016781	KNOWN	protein_coding	IQSEC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	64838398	65019201	R	IQ motif and SEC7 domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB19967.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030883}  [Source:UniProtKB/TrEMBL;Acc:F6ZM78]
ENSCJAG00000035352	NOVEL	protein_coding	ENSCJAG00000035352	chromosome:C_jacchus3.2.1:19:1:49578535:1	36006949	36007829	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051886}  [Source:UniProtKB/TrEMBL;Acc:F6VEB7]
ENSCJAG00000017043	KNOWN_BY_PROJECTION	protein_coding	DESI2	chromosome:C_jacchus3.2.1:19:1:49578535:1	36133645	36185388	R	desumoylating isopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:24264]
ENSCJAG00000009222	KNOWN_BY_PROJECTION	protein_coding	OR4C5	chromosome:C_jacchus3.2.1:11:1:130397257:1	111593887	111595283	R	olfactory receptor, family 4, subfamily C, member 5 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:14702]
ENSCJAG00000009220	NOVEL	pseudogene	ENSCJAG00000009220	chromosome:C_jacchus3.2.1:11:1:130397257:1	111619376	111620435	D	<no descrition>
ENSCJAG00000009219	KNOWN_BY_PROJECTION	protein_coding	OR4C46	chromosome:C_jacchus3.2.1:11:1:130397257:1	111626515	111628363	R	olfactory receptor, family 4, subfamily C, member 46 [Source:HGNC Symbol;Acc:HGNC:31271]
ENSCJAG00000009216	KNOWN_BY_PROJECTION	protein_coding	OR4C13	chromosome:C_jacchus3.2.1:11:1:130397257:1	111627359	111650302	R	olfactory receptor, family 4, subfamily C, member 13 [Source:HGNC Symbol;Acc:HGNC:15169]
ENSCJAG00000022695	NOVEL	protein_coding	ENSCJAG00000022695	chromosome:C_jacchus3.2.1:11:1:130397257:1	111668892	111670014	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5Q8]
ENSCJAG00000002595	KNOWN	protein_coding	LTA4H	chromosome:C_jacchus3.2.1:9:1:124281992:1	86027664	86065248	R	Leukotriene A(4) hydrolase {ECO:0000256|RuleBase:RU361141}  [Source:UniProtKB/TrEMBL;Acc:F7ALP9]
ENSCJAG00000009212	NOVEL	protein_coding	ENSCJAG00000009212	chromosome:C_jacchus3.2.1:11:1:130397257:1	111695838	111779478	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6XBL3]
ENSCJAG00000009209	NOVEL	pseudogene	ENSCJAG00000009209	chromosome:C_jacchus3.2.1:11:1:130397257:1	111791789	111792875	D	<no descrition>
ENSCJAG00000017054	KNOWN_BY_PROJECTION	protein_coding	C1orf101	chromosome:C_jacchus3.2.1:19:1:49578535:1	36200308	36348441	R	chromosome 1 open reading frame 101 [Source:HGNC Symbol;Acc:HGNC:28491]
ENSCJAG00000022693	KNOWN_BY_PROJECTION	protein_coding	OR4C11	chromosome:C_jacchus3.2.1:11:1:130397257:1	111881687	111882847	R	olfactory receptor, family 4, subfamily C, member 11 [Source:HGNC Symbol;Acc:HGNC:15167]
ENSCJAG00000009200	KNOWN_BY_PROJECTION	protein_coding	OR4P4	chromosome:C_jacchus3.2.1:11:1:130397257:1	111899735	111969470	D	olfactory receptor, family 4, subfamily P, member 4 [Source:HGNC Symbol;Acc:HGNC:15180]
ENSCJAG00000009193	NOVEL	pseudogene	ENSCJAG00000009193	chromosome:C_jacchus3.2.1:11:1:130397257:1	111983380	111984322	D	<no descrition>
ENSCJAG00000010678	KNOWN	protein_coding	ENSCJAG00000010678	chromosome:C_jacchus3.2.1:14:1:108792865:1	59078670	59184851	R	Callithrix jacchus general transcription factor IIA, 1-like (GTF2A1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001204841]
ENSCJAG00000009184	NOVEL	protein_coding	ENSCJAG00000009184	chromosome:C_jacchus3.2.1:11:1:130397257:1	112005313	112030062	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6Y0U0]
ENSCJAG00000009174	NOVEL	pseudogene	ENSCJAG00000009174	chromosome:C_jacchus3.2.1:11:1:130397257:1	112129355	112130330	D	<no descrition>
ENSCJAG00000017069	KNOWN_BY_PROJECTION	protein_coding	ADSS	chromosome:C_jacchus3.2.1:19:1:49578535:1	36362715	36403768	D	adenylosuccinate synthase [Source:HGNC Symbol;Acc:HGNC:292]
ENSCJAG00000009173	NOVEL	pseudogene	ENSCJAG00000009173	chromosome:C_jacchus3.2.1:11:1:130397257:1	112188789	112189796	D	<no descrition>
ENSCJAG00000009168	KNOWN_BY_PROJECTION	protein_coding	OR8K5	chromosome:C_jacchus3.2.1:11:1:130397257:1	112229459	112230715	R	olfactory receptor, family 8, subfamily K, member 5 [Source:HGNC Symbol;Acc:HGNC:15315]
ENSCJAG00000036203	NOVEL	pseudogene	ENSCJAG00000036203	chromosome:C_jacchus3.2.1:11:1:130397257:1	112249284	112250533	R	<no descrition>
ENSCJAG00000017074	KNOWN_BY_PROJECTION	protein_coding	C1orf100	chromosome:C_jacchus3.2.1:19:1:49578535:1	36419348	36448935	R	chromosome 1 open reading frame 100 [Source:HGNC Symbol;Acc:HGNC:30435]
ENSCJAG00000009165	NOVEL	pseudogene	ENSCJAG00000009165	chromosome:C_jacchus3.2.1:11:1:130397257:1	112286692	112287673	D	<no descrition>
ENSCJAG00000009154	NOVEL	protein_coding	ENSCJAG00000009154	chromosome:C_jacchus3.2.1:11:1:130397257:1	112315737	112317052	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7AKG7]
ENSCJAG00000009148	NOVEL	pseudogene	ENSCJAG00000009148	chromosome:C_jacchus3.2.1:11:1:130397257:1	112371427	112372496	D	<no descrition>
ENSCJAG00000017087	KNOWN	protein_coding	ZBTB18	chromosome:C_jacchus3.2.1:19:1:49578535:1	36754302	36760545	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031403}; Zinc finger protein 238 isoform 1 {ECO:0000313|EMBL:JAB30044.1}  [Source:UniProtKB/TrEMBL;Acc:F7IJR1]
ENSCJAG00000009145	KNOWN_BY_PROJECTION	protein_coding	OR8U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	112382598	112400641	D	olfactory receptor, family 8, subfamily U, member 1 [Source:HGNC Symbol;Acc:HGNC:19611]
ENSCJAG00000009134	NOVEL	pseudogene	ENSCJAG00000009134	chromosome:C_jacchus3.2.1:11:1:130397257:1	112409088	112410064	R	<no descrition>
ENSCJAG00000031624	NOVEL	protein_coding	ENSCJAG00000031624	chromosome:C_jacchus3.2.1:11:1:130397257:1	112432984	112433968	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7B488]
ENSCJAG00000009138	NOVEL	protein_coding	ENSCJAG00000009138	chromosome:C_jacchus3.2.1:11:1:130397257:1	112446405	112447473	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7B442]
ENSCJAG00000009126	KNOWN_BY_PROJECTION	protein_coding	OR5M8	chromosome:C_jacchus3.2.1:11:1:130397257:1	112476355	112489280	R	olfactory receptor, family 5, subfamily M, member 8 [Source:HGNC Symbol;Acc:HGNC:14846]
ENSCJAG00000033299	KNOWN_BY_PROJECTION	protein_coding	CEP55	chromosome:C_jacchus3.2.1:12:1:121768101:1	80365769	80378404	D	centrosomal protein 55kDa [Source:HGNC Symbol;Acc:HGNC:1161]
ENSCJAG00000016795	KNOWN_BY_PROJECTION	protein_coding	NUP210	chromosome:C_jacchus3.2.1:15:1:98464013:1	65261396	65443376	R	nucleoporin 210kDa [Source:HGNC Symbol;Acc:HGNC:30052]
ENSCJAG00000009121	NOVEL	protein_coding	ENSCJAG00000009121	chromosome:C_jacchus3.2.1:11:1:130397257:1	112505433	112506447	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7BN53]
ENSCJAG00000009120	KNOWN_BY_PROJECTION	protein_coding	OR5M11	chromosome:C_jacchus3.2.1:11:1:130397257:1	112520193	112539847	R	olfactory receptor, family 5, subfamily M, member 11 [Source:HGNC Symbol;Acc:HGNC:15291]
ENSCJAG00000009157	KNOWN_BY_PROJECTION	protein_coding	FFAR4	chromosome:C_jacchus3.2.1:12:1:121768101:1	80416879	80439680	D	free fatty acid receptor 4 [Source:HGNC Symbol;Acc:HGNC:19061]
ENSCJAG00000017843	KNOWN	protein_coding	SLC31A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	156653060	156698914	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032931}  [Source:UniProtKB/TrEMBL;Acc:F7GVN9]
ENSCJAG00000009170	KNOWN	protein_coding	RBP4	chromosome:C_jacchus3.2.1:12:1:121768101:1	80446302	80454067	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016806}  [Source:UniProtKB/TrEMBL;Acc:F6YKK7]
ENSCJAG00000004120	KNOWN_BY_PROJECTION	protein_coding	TREML2	chromosome:C_jacchus3.2.1:4:1:171630274:1	42373465	42382905	R	triggering receptor expressed on myeloid cells-like 2 [Source:HGNC Symbol;Acc:HGNC:21092]
ENSCJAG00000009117	NOVEL	pseudogene	ENSCJAG00000009117	chromosome:C_jacchus3.2.1:11:1:130397257:1	112548366	112549648	D	<no descrition>
ENSCJAG00000017090	KNOWN	protein_coding	AKT3	chromosome:C_jacchus3.2.1:19:1:49578535:1	36990869	37342202	D	RAC-gamma serine/threonine-protein kinase isoform 1 {ECO:0000313|EMBL:JAB38319.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031436}  [Source:UniProtKB/TrEMBL;Acc:F7IF11]
ENSCJAG00000009115	NOVEL	protein_coding	ENSCJAG00000009115	chromosome:C_jacchus3.2.1:11:1:130397257:1	112556917	112579053	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HCD9]
ENSCJAG00000022680	NOVEL	protein_coding	ENSCJAG00000022680	chromosome:C_jacchus3.2.1:11:1:130397257:1	112621765	112622999	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7H5T5]
ENSCJAG00000009107	NOVEL	protein_coding	ENSCJAG00000009107	chromosome:C_jacchus3.2.1:11:1:130397257:1	112629957	112630993	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6V268]
ENSCJAG00000022677	NOVEL	protein_coding	ENSCJAG00000022677	chromosome:C_jacchus3.2.1:11:1:130397257:1	112697324	112698769	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HAQ4]
ENSCJAG00000009066	KNOWN_BY_PROJECTION	protein_coding	LRRC55	chromosome:C_jacchus3.2.1:11:1:130397257:1	113014048	113021117	D	leucine rich repeat containing 55 [Source:HGNC Symbol;Acc:HGNC:32324]
ENSCJAG00000009063	KNOWN	protein_coding	APLNR	chromosome:C_jacchus3.2.1:11:1:130397257:1	113069944	113073877	R	Apelin receptor {ECO:0000313|EMBL:JAB14160.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046569}  [Source:UniProtKB/TrEMBL;Acc:F7I1H0]
ENSCJAG00000015570	KNOWN_BY_PROJECTION	protein_coding	PDE6C	chromosome:C_jacchus3.2.1:12:1:121768101:1	80464288	80525718	D	phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:HGNC:8787]
ENSCJAG00000004143	NOVEL	protein_coding	ENSCJAG00000004143	chromosome:C_jacchus3.2.1:4:1:171630274:1	42391251	42400899	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007529}  [Source:UniProtKB/TrEMBL;Acc:F6RVW1]
ENSCJAG00000017854	KNOWN	protein_coding	CDC26	chromosome:C_jacchus3.2.1:1:1:210400635:1	156698992	156707455	R	Anaphase-promoting complex subunit CDC26 {ECO:0000313|EMBL:JAB02219.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032937}  [Source:UniProtKB/TrEMBL;Acc:F7GVM0]
ENSCJAG00000004154	NOVEL	protein_coding	ENSCJAG00000004154	chromosome:C_jacchus3.2.1:4:1:171630274:1	42415917	42417598	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007543}  [Source:UniProtKB/TrEMBL;Acc:F6RUQ0]
ENSCJAG00000004160	KNOWN_BY_PROJECTION	protein_coding	TREM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	42462047	42474962	R	triggering receptor expressed on myeloid cells 1 [Source:HGNC Symbol;Acc:HGNC:17760]
ENSCJAG00000032489	NOVEL	protein_coding	ENSCJAG00000032489	chromosome:C_jacchus3.2.1:9:1:124281992:1	86126076	86127246	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042958}  [Source:UniProtKB/TrEMBL;Acc:F6V2L5]
ENSCJAG00000002592	KNOWN	protein_coding	ELK3	chromosome:C_jacchus3.2.1:9:1:124281992:1	86265701	86314973	D	ETS domain-containing protein Elk-3 {ECO:0000313|EMBL:JAB03993.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004698}  [Source:UniProtKB/TrEMBL;Acc:F6W6B0]
ENSCJAG00000017856	KNOWN	protein_coding	PRPF4	chromosome:C_jacchus3.2.1:1:1:210400635:1	156707560	156724513	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033006}  [Source:UniProtKB/TrEMBL;Acc:F6PW72]
ENSCJAG00000018780	NOVEL	protein_coding	ENSCJAG00000018780	chromosome:C_jacchus3.2.1:3:1:190850796:1	125355320	125361428	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025503}  [Source:UniProtKB/TrEMBL;Acc:F6ZXL0]
ENSCJAG00000004170	KNOWN_BY_PROJECTION	protein_coding	NCR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	42520302	42540519	D	natural cytotoxicity triggering receptor 2 [Source:HGNC Symbol;Acc:HGNC:6732]
ENSCJAG00000009983	NOVEL	protein_coding	ENSCJAG00000009983	chromosome:C_jacchus3.2.1:3:1:190850796:1	125493270	125507949	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018401}  [Source:UniProtKB/TrEMBL;Acc:F7H6B6]
ENSCJAG00000016844	KNOWN	protein_coding	HDAC11	chromosome:C_jacchus3.2.1:15:1:98464013:1	65421754	65468014	D	Histone deacetylase 11 isoform 1 {ECO:0000313|EMBL:JAB07429.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031045}  [Source:UniProtKB/TrEMBL;Acc:F7HYS2]
ENSCJAG00000009043	KNOWN	protein_coding	TNKS1BP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113133498	113165328	R	182 kDa tankyrase-1-binding protein {ECO:0000313|EMBL:JAB25621.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016600}  [Source:UniProtKB/TrEMBL;Acc:F6YM25]
ENSCJAG00000010751	KNOWN	protein_coding	PPP1R21	chromosome:C_jacchus3.2.1:14:1:108792865:1	59240629	59324207	R	Protein phosphatase 1 regulatory subunit 21 isoform 1 {ECO:0000313|EMBL:JAB07225.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020054}  [Source:UniProtKB/TrEMBL;Acc:F7HHW3]
ENSCJAG00000002538	KNOWN	protein_coding	CDK17	chromosome:C_jacchus3.2.1:9:1:124281992:1	86334557	86460404	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004681}  [Source:UniProtKB/TrEMBL;Acc:F6W7J9]
ENSCJAG00000009013	KNOWN	protein_coding	SSRP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113166349	113176373	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016558}  [Source:UniProtKB/TrEMBL;Acc:F7B5L4]
ENSCJAG00000002242	KNOWN_BY_PROJECTION	protein_coding	PYGO1	chromosome:C_jacchus3.2.1:10:1:132174527:1	32802115	32854087	R	pygopus family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30256]
ENSCJAG00000015574	KNOWN	protein_coding	FRA10AC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	80528587	80562770	R	Protein FRA10AC1 {ECO:0000313|EMBL:JAB10784.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028703}  [Source:UniProtKB/TrEMBL;Acc:F7BMC1]
ENSCJAG00000016873	KNOWN_BY_PROJECTION	protein_coding	FBLN2	chromosome:C_jacchus3.2.1:15:1:98464013:1	65517163	65587040	D	fibulin 2 [Source:HGNC Symbol;Acc:HGNC:3601]
ENSCJAG00000017886	KNOWN_BY_PROJECTION	protein_coding	RNF183	chromosome:C_jacchus3.2.1:1:1:210400635:1	156729401	156731309	R	ring finger protein 183 [Source:HGNC Symbol;Acc:HGNC:28721]
ENSCJAG00000015366	NOVEL	protein_coding	ENSCJAG00000015366	chromosome:C_jacchus3.2.1:3:1:190850796:1	125542510	125543383	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028233}  [Source:UniProtKB/TrEMBL;Acc:F6WUI6]
ENSCJAG00000002222	KNOWN_BY_PROJECTION	protein_coding	PRTG	chromosome:C_jacchus3.2.1:10:1:132174527:1	32906645	33038866	R	protogenin [Source:HGNC Symbol;Acc:HGNC:26373]
ENSCJAG00000017785	KNOWN_BY_PROJECTION	protein_coding	WDR31	chromosome:C_jacchus3.2.1:1:1:210400635:1	156750032	156778612	R	WD repeat domain 31 [Source:HGNC Symbol;Acc:HGNC:21421]
ENSCJAG00000016899	KNOWN	protein_coding	WNT7A	chromosome:C_jacchus3.2.1:15:1:98464013:1	65767414	65827153	R	Protein Wnt-7a  [Source:UniProtKB/Swiss-Prot;Acc:Q1KYK6]
ENSCJAG00000015588	KNOWN	protein_coding	LGI1	chromosome:C_jacchus3.2.1:12:1:121768101:1	80618176	80655887	D	Leucine-rich glioma-inactivated protein 1 {ECO:0000313|EMBL:JAB12461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028780}  [Source:UniProtKB/TrEMBL;Acc:F7A305]
ENSCJAG00000016759	KNOWN	protein_coding	DLG4	chromosome:C_jacchus3.2.1:5:1:159171411:1	74655076	74685429	D	Disks large homolog 4 isoform 2 {ECO:0000313|EMBL:JAB23082.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028596}  [Source:UniProtKB/TrEMBL;Acc:F6Z461]
ENSCJAG00000016916	NOVEL	protein_coding	ENSCJAG00000016916	chromosome:C_jacchus3.2.1:15:1:98464013:1	65852348	65853049	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031118}  [Source:UniProtKB/TrEMBL;Acc:F7IRX4]
ENSCJAG00000016918	NOVEL	pseudogene	ENSCJAG00000016918	chromosome:C_jacchus3.2.1:15:1:98464013:1	65860553	65861426	R	<no descrition>
ENSCJAG00000016920	KNOWN_BY_PROJECTION	protein_coding	CHCHD4	chromosome:C_jacchus3.2.1:15:1:98464013:1	65921181	65934113	R	coiled-coil-helix-coiled-coil-helix domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26467]
ENSCJAG00000010894	KNOWN	protein_coding	FOXN2	chromosome:C_jacchus3.2.1:14:1:108792865:1	59379880	59451072	R	Forkhead box protein N2 {ECO:0000313|EMBL:JAB13437.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020096}  [Source:UniProtKB/TrEMBL;Acc:F7H7E4]
ENSCJAG00000008959	KNOWN_BY_PROJECTION	protein_coding	P2RX3	chromosome:C_jacchus3.2.1:11:1:130397257:1	113178512	113212184	D	purinergic receptor P2X, ligand gated ion channel, 3 [Source:HGNC Symbol;Acc:HGNC:8534]
ENSCJAG00000016924	KNOWN_BY_PROJECTION	protein_coding	TMEM43	chromosome:C_jacchus3.2.1:15:1:98464013:1	65943274	65972056	D	transmembrane protein 43 [Source:HGNC Symbol;Acc:HGNC:28472]
ENSCJAG00000009972	KNOWN_BY_PROJECTION	protein_coding	TMPRSS11E	chromosome:C_jacchus3.2.1:3:1:190850796:1	125550124	125618684	R	transmembrane protease, serine 11E [Source:HGNC Symbol;Acc:HGNC:24465]
ENSCJAG00000004180	KNOWN_BY_PROJECTION	protein_coding	FOXP4	chromosome:C_jacchus3.2.1:4:1:171630274:1	42743863	42800350	D	forkhead box P4 [Source:HGNC Symbol;Acc:HGNC:20842]
ENSCJAG00000017887	KNOWN	protein_coding	BSPRY	chromosome:C_jacchus3.2.1:1:1:210400635:1	156789514	156812940	D	B box and SPRY domain-containing protein {ECO:0000313|EMBL:JAB09542.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033019}  [Source:UniProtKB/TrEMBL;Acc:F6PLW9]
ENSCJAG00000002581	NOVEL	protein_coding	ENSCJAG00000002581	chromosome:C_jacchus3.2.1:9:1:124281992:1	86407627	86408361	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004693}  [Source:UniProtKB/TrEMBL;Acc:F6W6G3]
ENSCJAG00000002536	NOVEL	pseudogene	ENSCJAG00000002536	chromosome:C_jacchus3.2.1:9:1:124281992:1	86544075	86544570	R	<no descrition>
ENSCJAG00000010905	NOVEL	pseudogene	ENSCJAG00000010905	chromosome:C_jacchus3.2.1:14:1:108792865:1	59609955	59610537	R	<no descrition>
ENSCJAG00000017894	KNOWN_BY_PROJECTION	protein_coding	ALAD	chromosome:C_jacchus3.2.1:1:1:210400635:1	156830438	156846332	R	aminolevulinate dehydratase [Source:HGNC Symbol;Acc:HGNC:395]
ENSCJAG00000002518	KNOWN_BY_PROJECTION	protein_coding	CFAP54	chromosome:C_jacchus3.2.1:9:1:124281992:1	86552592	86676963	D	cilia and flagella associated 54 [Source:HGNC Symbol;Acc:HGNC:26456]
ENSCJAG00000016952	KNOWN_BY_PROJECTION	protein_coding	XPC	chromosome:C_jacchus3.2.1:15:1:98464013:1	65973549	66008508	R	xeroderma pigmentosum, complementation group C [Source:HGNC Symbol;Acc:HGNC:12816]
ENSCJAG00000008948	KNOWN_BY_PROJECTION	protein_coding	PRG3	chromosome:C_jacchus3.2.1:11:1:130397257:1	113217857	113222165	R	proteoglycan 3 [Source:HGNC Symbol;Acc:HGNC:9363]
ENSCJAG00000036833	KNOWN_BY_PROJECTION	protein_coding	PRG2	chromosome:C_jacchus3.2.1:11:1:130397257:1	113228837	113267848	R	proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) [Source:HGNC Symbol;Acc:HGNC:9362]
ENSCJAG00000017917	KNOWN	protein_coding	POLE3	chromosome:C_jacchus3.2.1:1:1:210400635:1	156851715	156855099	R	DNA polymerase epsilon subunit 3 {ECO:0000313|EMBL:JAB11705.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033076}  [Source:UniProtKB/TrEMBL;Acc:F6TIZ6]
ENSCJAG00000016977	KNOWN	protein_coding	ENSCJAG00000016977	chromosome:C_jacchus3.2.1:15:1:98464013:1	66008562	66022233	D	U6 snRNA-associated Sm-like protein LSm3 {ECO:0000313|EMBL:JAB04076.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031240}  [Source:UniProtKB/TrEMBL;Acc:F7ICR4]
ENSCJAG00000009934	KNOWN_BY_PROJECTION	protein_coding	YTHDC1	chromosome:C_jacchus3.2.1:3:1:190850796:1	125705158	125741275	D	YTH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30626]
ENSCJAG00000017112	KNOWN	protein_coding	SDCCAG8	chromosome:C_jacchus3.2.1:19:1:49578535:1	37330302	37575362	R	Serologically defined colon cancer antigen 8 {ECO:0000313|EMBL:JAB30558.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031515}  [Source:UniProtKB/TrEMBL;Acc:F7I0U0]
ENSCJAG00000015634	KNOWN	protein_coding	SLC35G1	chromosome:C_jacchus3.2.1:12:1:121768101:1	80751447	80760610	D	Solute carrier family 35 member G1 isoform 1 {ECO:0000313|EMBL:JAB08053.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028790}  [Source:UniProtKB/TrEMBL;Acc:F7A2U3]
ENSCJAG00000016992	KNOWN_BY_PROJECTION	protein_coding	SLC6A6	chromosome:C_jacchus3.2.1:15:1:98464013:1	66268302	66314150	D	solute carrier family 6 (neurotransmitter transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11052]
ENSCJAG00000017924	KNOWN_BY_PROJECTION	protein_coding	C9orf43	chromosome:C_jacchus3.2.1:1:1:210400635:1	156855005	156875287	D	chromosome 9 open reading frame 43 [Source:HGNC Symbol;Acc:HGNC:23570]
ENSCJAG00000010907	KNOWN	protein_coding	FBXO11	chromosome:C_jacchus3.2.1:14:1:108792865:1	59869442	59970779	D	F-box only protein 11 isoform 4 {ECO:0000313|EMBL:JAB32291.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020325}  [Source:UniProtKB/TrEMBL;Acc:F7H1U8]
ENSCJAG00000017014	KNOWN_BY_PROJECTION	protein_coding	GRIP2	chromosome:C_jacchus3.2.1:15:1:98464013:1	66325028	66373818	R	glutamate receptor interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:23841]
ENSCJAG00000008898	KNOWN	protein_coding	SLC43A3	chromosome:C_jacchus3.2.1:11:1:130397257:1	113250286	113271177	R	Solute carrier family 43 member 3 {ECO:0000313|EMBL:JAB05493.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016319}  [Source:UniProtKB/TrEMBL;Acc:F7C616]
ENSCJAG00000017045	KNOWN_BY_PROJECTION	protein_coding	CCDC174	chromosome:C_jacchus3.2.1:15:1:98464013:1	66484793	66504269	D	coiled-coil domain containing 174 [Source:HGNC Symbol;Acc:HGNC:28033]
ENSCJAG00000015641	KNOWN_BY_PROJECTION	protein_coding	PLCE1	chromosome:C_jacchus3.2.1:12:1:121768101:1	80849523	81238122	D	phospholipase C, epsilon 1 [Source:HGNC Symbol;Acc:HGNC:17175]
ENSCJAG00000017083	KNOWN_BY_PROJECTION	protein_coding	C3orf20	chromosome:C_jacchus3.2.1:15:1:98464013:1	66508024	66618954	D	chromosome 3 open reading frame 20 [Source:HGNC Symbol;Acc:HGNC:25320]
ENSCJAG00000017155	KNOWN	protein_coding	CEP170	chromosome:C_jacchus3.2.1:19:1:49578535:1	37575977	37715281	D	Centrosomal protein of 170 kDa isoform alpha {ECO:0000313|EMBL:JAB17779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031655}  [Source:UniProtKB/TrEMBL;Acc:F7IA73]
ENSCJAG00000017099	KNOWN_BY_PROJECTION	protein_coding	FGD5	chromosome:C_jacchus3.2.1:15:1:98464013:1	66671256	66789168	D	FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
ENSCJAG00000002500	NOVEL	protein_coding	ENSCJAG00000002500	chromosome:C_jacchus3.2.1:9:1:124281992:1	86689042	86801234	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004566}  [Source:UniProtKB/TrEMBL;Acc:F7BP49]
ENSCJAG00000016931	KNOWN_BY_PROJECTION	protein_coding	RNASEK	chromosome:C_jacchus3.2.1:5:1:159171411:1	74681112	74877196	R	ribonuclease, RNase K [Source:HGNC Symbol;Acc:HGNC:33911]
ENSCJAG00000002183	KNOWN_BY_PROJECTION	protein_coding	NEDD4	chromosome:C_jacchus3.2.1:10:1:132174527:1	32926985	33298322	R	neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:7727]
ENSCJAG00000009907	KNOWN_BY_PROJECTION	protein_coding	TMPRSS11B	chromosome:C_jacchus3.2.1:3:1:190850796:1	125828773	125845983	D	transmembrane protease, serine 11B [Source:HGNC Symbol;Acc:HGNC:25398]
ENSCJAG00000016819	KNOWN_BY_PROJECTION	protein_coding	CLEC10A	chromosome:C_jacchus3.2.1:5:1:159171411:1	74809145	74818887	D	C-type lectin domain family 10, member A [Source:HGNC Symbol;Acc:HGNC:16916]
ENSCJAG00000017131	KNOWN_BY_PROJECTION	protein_coding	NR2C2	chromosome:C_jacchus3.2.1:15:1:98464013:1	66801437	66900823	D	nuclear receptor subfamily 2, group C, member 2 [Source:HGNC Symbol;Acc:HGNC:7972]
ENSCJAG00000017934	KNOWN_BY_PROJECTION	protein_coding	RGS3	chromosome:C_jacchus3.2.1:1:1:210400635:1	156914338	157033031	D	regulator of G-protein signaling 3 [Source:HGNC Symbol;Acc:HGNC:9999]
ENSCJAG00000002497	NOVEL	protein_coding	ENSCJAG00000002497	chromosome:C_jacchus3.2.1:9:1:124281992:1	86946590	86948352	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004542}  [Source:UniProtKB/TrEMBL;Acc:F7C518]
ENSCJAG00000017160	KNOWN	protein_coding	MRPS25	chromosome:C_jacchus3.2.1:15:1:98464013:1	66907724	66921469	R	28S ribosomal protein S25, mitochondrial {ECO:0000313|EMBL:JAB25847.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031532}  [Source:UniProtKB/TrEMBL;Acc:F7HYE3]
ENSCJAG00000009889	KNOWN_BY_PROJECTION	protein_coding	TMPRSS11F	chromosome:C_jacchus3.2.1:3:1:190850796:1	125934133	126004514	D	transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
ENSCJAG00000016855	KNOWN_BY_PROJECTION	protein_coding	SLC16A11	chromosome:C_jacchus3.2.1:5:1:159171411:1	74848895	74851186	D	solute carrier family 16, member 11 [Source:HGNC Symbol;Acc:HGNC:23093]
ENSCJAG00000017163	KNOWN	protein_coding	ZFYVE20	chromosome:C_jacchus3.2.1:15:1:98464013:1	66929060	66959441	R	Rabenosyn-5 {ECO:0000313|EMBL:JAB01843.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031552}  [Source:UniProtKB/TrEMBL;Acc:F7HSB1]
ENSCJAG00000004196	KNOWN_BY_PROJECTION	protein_coding	MDFI	chromosome:C_jacchus3.2.1:4:1:171630274:1	42855538	42871222	D	MyoD family inhibitor [Source:HGNC Symbol;Acc:HGNC:6967]
ENSCJAG00000016892	KNOWN	protein_coding	SLC16A13	chromosome:C_jacchus3.2.1:5:1:159171411:1	74852346	74856593	R	Monocarboxylate transporter 13 {ECO:0000313|EMBL:JAB05913.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031093}  [Source:UniProtKB/TrEMBL;Acc:F7HT83]
ENSCJAG00000017170	NOVEL	pseudogene	ENSCJAG00000017170	chromosome:C_jacchus3.2.1:15:1:98464013:1	66998352	66999278	R	<no descrition>
ENSCJAG00000017173	KNOWN_BY_PROJECTION	protein_coding	TRH	chromosome:C_jacchus3.2.1:15:1:98464013:1	67019506	67023153	R	thyrotropin-releasing hormone [Source:HGNC Symbol;Acc:HGNC:12298]
ENSCJAG00000002430	KNOWN_BY_PROJECTION	protein_coding	NEDD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	86952880	86998515	D	neural precursor cell expressed, developmentally down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:7723]
ENSCJAG00000016905	KNOWN_BY_PROJECTION	protein_coding	BCL6B	chromosome:C_jacchus3.2.1:5:1:159171411:1	74862851	74867117	R	B-cell CLL/lymphoma 6, member B [Source:HGNC Symbol;Acc:HGNC:1002]
ENSCJAG00000004199	KNOWN	protein_coding	TFEB	chromosome:C_jacchus3.2.1:4:1:171630274:1	42908494	42964148	R	Transcription factor EB (Predicted) {ECO:0000313|EMBL:ABZ11032.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004715}  [Source:UniProtKB/TrEMBL;Acc:B0KWN0]
ENSCJAG00000017178	KNOWN_BY_PROJECTION	protein_coding	TMCC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	67088236	67346813	D	transmembrane and coiled-coil domain family 1 [Source:HGNC Symbol;Acc:HGNC:29116]
ENSCJAG00000034449	NOVEL	protein_coding	ENSCJAG00000034449	chromosome:C_jacchus3.2.1:15:1:98464013:1	67404229	67413253	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046601}  [Source:UniProtKB/TrEMBL;Acc:F7HN71]
ENSCJAG00000017193	NOVEL	protein_coding	ENSCJAG00000017193	chromosome:C_jacchus3.2.1:15:1:98464013:1	67417078	67421526	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031608}  [Source:UniProtKB/TrEMBL;Acc:F7IJK4]
ENSCJAG00000017195	KNOWN_BY_PROJECTION	protein_coding	RHO	chromosome:C_jacchus3.2.1:15:1:98464013:1	67439288	67470139	R	rhodopsin [Source:HGNC Symbol;Acc:HGNC:10012]
ENSCJAG00000004226	KNOWN	protein_coding	PGC	chromosome:C_jacchus3.2.1:4:1:171630274:1	42966024	42975697	R	Gastricsin  [Source:UniProtKB/Swiss-Prot;Acc:Q9N2D3]
ENSCJAG00000017206	NOVEL	protein_coding	ENSCJAG00000017206	chromosome:C_jacchus3.2.1:15:1:98464013:1	67452625	67454955	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031641}  [Source:UniProtKB/TrEMBL;Acc:F7ICG8]
ENSCJAG00000017218	KNOWN	protein_coding	PLD5	chromosome:C_jacchus3.2.1:19:1:49578535:1	38239021	38661556	D	Inactive phospholipase D5 isoform 2 {ECO:0000313|EMBL:JAB45329.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031697}  [Source:UniProtKB/TrEMBL;Acc:F7I5E2]
ENSCJAG00000017209	NOVEL	protein_coding	ENSCJAG00000017209	chromosome:C_jacchus3.2.1:15:1:98464013:1	67460163	67464125	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031647}  [Source:UniProtKB/TrEMBL;Acc:F7ICG1]
ENSCJAG00000009860	KNOWN_BY_PROJECTION	protein_coding	TMPRSS11A	chromosome:C_jacchus3.2.1:3:1:190850796:1	126071681	126132158	D	transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:HGNC:27954]
ENSCJAG00000009845	KNOWN_BY_PROJECTION	protein_coding	TMPRSS11D	chromosome:C_jacchus3.2.1:3:1:190850796:1	126174618	126207973	D	transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
ENSCJAG00000002219	NOVEL	pseudogene	ENSCJAG00000002219	chromosome:C_jacchus3.2.1:10:1:132174527:1	33286668	33287766	D	<no descrition>
ENSCJAG00000002163	KNOWN_BY_PROJECTION	protein_coding	RFX7	chromosome:C_jacchus3.2.1:10:1:132174527:1	33422672	33435391	R	regulatory factor X, 7 [Source:HGNC Symbol;Acc:HGNC:25777]
ENSCJAG00000033404	NOVEL	pseudogene	ENSCJAG00000033404	chromosome:C_jacchus3.2.1:10:1:132174527:1	33683375	33683833	D	<no descrition>
ENSCJAG00000009836	KNOWN_BY_PROJECTION	protein_coding	GNRHR	chromosome:C_jacchus3.2.1:3:1:190850796:1	126273393	126293441	D	gonadotropin-releasing hormone receptor [Source:HGNC Symbol;Acc:HGNC:4421]
ENSCJAG00000008890	KNOWN_BY_PROJECTION	protein_coding	RTN4RL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	113305959	113322319	D	reticulon 4 receptor-like 2 [Source:HGNC Symbol;Acc:HGNC:23053]
ENSCJAG00000020613	KNOWN_BY_PROJECTION	protein_coding	PLA2G4D	chromosome:C_jacchus3.2.1:10:1:132174527:1	33792684	33810970	D	phospholipase A2, group IVD (cytosolic) [Source:HGNC Symbol;Acc:HGNC:30038]
ENSCJAG00000008825	KNOWN_BY_PROJECTION	protein_coding	SMTNL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113319389	113391919	D	smoothelin-like 1 [Source:HGNC Symbol;Acc:HGNC:32394]
ENSCJAG00000016940	KNOWN	protein_coding	ALOX12	chromosome:C_jacchus3.2.1:5:1:159171411:1	74879059	74898365	R	Arachidonate 12-lipoxygenase, 12S-type {ECO:0000313|EMBL:JAB06213.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031187}  [Source:UniProtKB/TrEMBL;Acc:F7IM53]
ENSCJAG00000008882	KNOWN	protein_coding	SLC43A1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113330390	113355405	R	Large neutral amino acids transporter small subunit 3 {ECO:0000313|EMBL:JAB10933.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016260}  [Source:UniProtKB/TrEMBL;Acc:F6WAR2]
ENSCJAG00000017213	KNOWN_BY_PROJECTION	protein_coding	IFT122	chromosome:C_jacchus3.2.1:15:1:98464013:1	67478469	67628986	R	intraflagellar transport 122 [Source:HGNC Symbol;Acc:HGNC:13556]
ENSCJAG00000008878	KNOWN	protein_coding	TIMM10	chromosome:C_jacchus3.2.1:11:1:130397257:1	113369565	113372154	R	Mitochondrial import inner membrane translocase subunit Tim10 {ECO:0000313|EMBL:JAB19478.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016249}  [Source:UniProtKB/TrEMBL;Acc:F6XGD1]
ENSCJAG00000035297	NOVEL	protein_coding	ENSCJAG00000035297	chromosome:C_jacchus3.2.1:19:1:49578535:1	38685451	38686405	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035046}  [Source:UniProtKB/TrEMBL;Acc:F7IDK1]
ENSCJAG00000008818	KNOWN_BY_PROJECTION	protein_coding	UBE2L6	chromosome:C_jacchus3.2.1:11:1:130397257:1	113393088	113408608	R	ubiquitin-conjugating enzyme E2L 6 [Source:HGNC Symbol;Acc:HGNC:12490]
ENSCJAG00000009707	KNOWN_BY_PROJECTION	protein_coding	UBA6	chromosome:C_jacchus3.2.1:3:1:190850796:1	126325271	126760336	D	ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
ENSCJAG00000017236	KNOWN_BY_PROJECTION	protein_coding	MAP1LC3C	chromosome:C_jacchus3.2.1:19:1:49578535:1	38721664	38725356	D	microtubule-associated protein 1 light chain 3 gamma [Source:HGNC Symbol;Acc:HGNC:13353]
ENSCJAG00000011019	KNOWN_BY_PROJECTION	protein_coding	MSH6	chromosome:C_jacchus3.2.1:14:1:108792865:1	59970608	59994598	R	mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
ENSCJAG00000016935	NOVEL	protein_coding	ENSCJAG00000016935	chromosome:C_jacchus3.2.1:5:1:159171411:1	74879914	74887709	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031154}  [Source:UniProtKB/TrEMBL;Acc:F7IPI1]
ENSCJAG00000016961	NOVEL	pseudogene	ENSCJAG00000016961	chromosome:C_jacchus3.2.1:5:1:159171411:1	74953339	74953742	R	<no descrition>
ENSCJAG00000034992	NOVEL	protein_coding	ENSCJAG00000034992	chromosome:C_jacchus3.2.1:11:1:130397257:1	113419038	113420230	D	<no descrition>
ENSCJAG00000013408	KNOWN_BY_PROJECTION	protein_coding	CNTNAP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	74998673	75155036	D	contactin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:8011]
ENSCJAG00000004240	KNOWN	protein_coding	FRS3	chromosome:C_jacchus3.2.1:4:1:171630274:1	42998127	43005803	R	Fibroblast growth factor receptor substrate 3 {ECO:0000313|EMBL:JAB09629.1}; Fibroblast growth factor receptor substrate 3 (Predicted) {ECO:0000313|EMBL:ABZ11033.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007681}  [Source:UniProtKB/TrEMBL;Acc:B0KWN1]
ENSCJAG00000017293	KNOWN_BY_PROJECTION	protein_coding	MBD4	chromosome:C_jacchus3.2.1:15:1:98464013:1	67562282	67571458	D	methyl-CpG binding domain protein 4 [Source:HGNC Symbol;Acc:HGNC:6919]
ENSCJAG00000017314	KNOWN_BY_PROJECTION	protein_coding	EFCAB12	chromosome:C_jacchus3.2.1:15:1:98464013:1	67575435	67603383	D	EF-hand calcium binding domain 12 [Source:HGNC Symbol;Acc:HGNC:28061]
ENSCJAG00000008787	KNOWN_BY_PROJECTION	protein_coding	SERPING1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113449868	113467141	D	serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 [Source:HGNC Symbol;Acc:HGNC:1228]
ENSCJAG00000033589	NOVEL	protein_coding	ENSCJAG00000033589	chromosome:C_jacchus3.2.1:15:1:98464013:1	67637481	67638470	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031028}  [Source:UniProtKB/TrEMBL;Acc:F7I137]
ENSCJAG00000017385	NOVEL	protein_coding	ENSCJAG00000017385	chromosome:C_jacchus3.2.1:15:1:98464013:1	67675375	67675838	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032016}  [Source:UniProtKB/TrEMBL;Acc:F7D484]
ENSCJAG00000020620	KNOWN_BY_PROJECTION	protein_coding	PLA2G4E	chromosome:C_jacchus3.2.1:10:1:132174527:1	33858056	33896939	D	phospholipase A2, group IVE [Source:HGNC Symbol;Acc:HGNC:24791]
ENSCJAG00000002421	KNOWN	protein_coding	TMPO	chromosome:C_jacchus3.2.1:9:1:124281992:1	88597045	88629375	D	Thymopoietin isoform gamma {ECO:0000313|EMBL:JAB20087.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004416}  [Source:UniProtKB/TrEMBL;Acc:F6YNQ0]
ENSCJAG00000017390	KNOWN_BY_PROJECTION	protein_coding	H1FX	chromosome:C_jacchus3.2.1:15:1:98464013:1	67677788	67680247	D	H1 histone family, member X [Source:HGNC Symbol;Acc:HGNC:4722]
ENSCJAG00000017241	KNOWN_BY_PROJECTION	protein_coding	EXO1	chromosome:C_jacchus3.2.1:19:1:49578535:1	38777728	38906251	R	exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3511]
ENSCJAG00000017396	KNOWN	protein_coding	HMCES	chromosome:C_jacchus3.2.1:15:1:98464013:1	67690302	67711537	R	UPF0361 protein C3orf37 {ECO:0000313|EMBL:JAB02504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032072}  [Source:UniProtKB/TrEMBL;Acc:F7H7D8]
ENSCJAG00000033649	NOVEL	protein_coding	ENSCJAG00000033649	chromosome:C_jacchus3.2.1:14:1:108792865:1	60058638	60059529	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045695}  [Source:UniProtKB/TrEMBL;Acc:F6PRR5]
ENSCJAG00000000614	KNOWN_BY_PROJECTION	protein_coding	KCNK12	chromosome:C_jacchus3.2.1:14:1:108792865:1	60231951	60284401	D	potassium channel, two pore domain subfamily K, member 12 [Source:HGNC Symbol;Acc:HGNC:6274]
ENSCJAG00000000620	KNOWN	protein_coding	MSH2	chromosome:C_jacchus3.2.1:14:1:108792865:1	60321907	60412548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001074}  [Source:UniProtKB/TrEMBL;Acc:F7A2L2]
ENSCJAG00000005086	KNOWN	protein_coding	HSD17B1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75001668	75059460	D	Callithrix jacchus hydroxysteroid (17-beta) dehydrogenase 1 (HSD17B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001257229]
ENSCJAG00000015753	KNOWN_BY_PROJECTION	protein_coding	NOC3L	chromosome:C_jacchus3.2.1:12:1:121768101:1	81219419	81280607	R	nucleolar complex associated 3 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24034]
ENSCJAG00000008759	KNOWN	protein_coding	YPEL4	chromosome:C_jacchus3.2.1:11:1:130397257:1	113501917	113508021	R	Protein yippee-like {ECO:0000256|RuleBase:RU110713}  [Source:UniProtKB/TrEMBL;Acc:F7CLM8]
ENSCJAG00000017265	KNOWN_BY_PROJECTION	protein_coding	C7orf31	chromosome:C_jacchus3.2.1:19:1:49578535:1	38830285	38873735	D	chromosome 7 open reading frame 31 [Source:HGNC Symbol;Acc:HGNC:21722]
ENSCJAG00000004246	KNOWN	protein_coding	PRICKLE4	chromosome:C_jacchus3.2.1:4:1:171630274:1	43008390	43015940	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051742}  [Source:UniProtKB/TrEMBL;Acc:F7BZ96]
ENSCJAG00000017273	NOVEL	protein_coding	ENSCJAG00000017273	chromosome:C_jacchus3.2.1:19:1:49578535:1	38831166	38831755	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031778}  [Source:UniProtKB/TrEMBL;Acc:F7IRL2]
ENSCJAG00000017274	KNOWN	protein_coding	ENSCJAG00000017274	chromosome:C_jacchus3.2.1:19:1:49578535:1	38880841	38883861	D	Cytochrome c {ECO:0000313|EMBL:JAB21599.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049157}  [Source:UniProtKB/TrEMBL;Acc:F7AI40]
ENSCJAG00000000624	KNOWN	protein_coding	EPCAM	chromosome:C_jacchus3.2.1:14:1:108792865:1	60429704	60440930	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001087}  [Source:UniProtKB/TrEMBL;Acc:F6ZK85]
ENSCJAG00000008748	KNOWN	protein_coding	CLP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113515255	113520161	D	Polyribonucleotide 5'-hydroxyl-kinase Clp1 {ECO:0000256|HAMAP-Rule:MF_03035}  [Source:UniProtKB/TrEMBL;Acc:F6VRZ5]
ENSCJAG00000017327	NOVEL	protein_coding	ENSCJAG00000017327	chromosome:C_jacchus3.2.1:15:1:98464013:1	67713444	67742524	R	<no descrition>
ENSCJAG00000036721	NOVEL	protein_coding	ENSCJAG00000036721	chromosome:C_jacchus3.2.1:4:1:171630274:1	43014971	43015378	D	<no descrition>
ENSCJAG00000004251	NOVEL	protein_coding	USP49	chromosome:C_jacchus3.2.1:4:1:171630274:1	43021024	43101198	R	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:B0KWN4]
ENSCJAG00000031440	KNOWN_BY_PROJECTION	protein_coding	ZNF618	chromosome:C_jacchus3.2.1:1:1:210400635:1	157307639	157487020	D	zinc finger protein 618 [Source:HGNC Symbol;Acc:HGNC:29416]
ENSCJAG00000000635	NOVEL	pseudogene	ENSCJAG00000000635	chromosome:C_jacchus3.2.1:14:1:108792865:1	60516638	60517515	D	<no descrition>
ENSCJAG00000005064	KNOWN_BY_PROJECTION	protein_coding	COASY	chromosome:C_jacchus3.2.1:5:1:159171411:1	75010972	75015169	D	CoA synthase [Source:HGNC Symbol;Acc:HGNC:29932]
ENSCJAG00000000638	KNOWN	protein_coding	CALM3	chromosome:C_jacchus3.2.1:14:1:108792865:1	60671552	60687246	D	Calmodulin {ECO:0000313|EMBL:JAB11751.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032742}  [Source:UniProtKB/TrEMBL;Acc:F7GQQ2]
ENSCJAG00000008661	KNOWN	protein_coding	ZDHHC5	chromosome:C_jacchus3.2.1:11:1:130397257:1	113525937	113559690	D	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F6WVL3]
ENSCJAG00000002392	KNOWN	protein_coding	SLC25A3	chromosome:C_jacchus3.2.1:9:1:124281992:1	88676459	88685411	D	Phosphate carrier protein, mitochondrial isoform b {ECO:0000313|EMBL:JAB33741.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004396}  [Source:UniProtKB/TrEMBL;Acc:F7AN88]
ENSCJAG00000017430	KNOWN_BY_PROJECTION	protein_coding	CNBP	chromosome:C_jacchus3.2.1:15:1:98464013:1	67804401	67819889	D	CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164]
ENSCJAG00000017997	KNOWN_BY_PROJECTION	protein_coding	AMBP	chromosome:C_jacchus3.2.1:1:1:210400635:1	157497403	157511447	R	alpha-1-microglobulin/bikunin precursor [Source:HGNC Symbol;Acc:HGNC:453]
ENSCJAG00000017419	KNOWN	protein_coding	ISY1	chromosome:C_jacchus3.2.1:15:1:98464013:1	67835929	67869781	D	Pre-mRNA-splicing factor ISY1 homolog isoform 2 {ECO:0000313|EMBL:JAB03685.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032091}  [Source:UniProtKB/TrEMBL;Acc:F7H762]
ENSCJAG00000015804	NOVEL	pseudogene	ENSCJAG00000015804	chromosome:C_jacchus3.2.1:12:1:121768101:1	81269854	81271107	D	<no descrition>
ENSCJAG00000008642	KNOWN_BY_PROJECTION	protein_coding	MED19	chromosome:C_jacchus3.2.1:11:1:130397257:1	113562008	113570121	R	mediator complex subunit 19 [Source:HGNC Symbol;Acc:HGNC:29600]
ENSCJAG00000015806	KNOWN_BY_PROJECTION	protein_coding	TBC1D12	chromosome:C_jacchus3.2.1:12:1:121768101:1	81328145	81453208	D	TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
ENSCJAG00000017281	KNOWN_BY_PROJECTION	protein_coding	WDR64	chromosome:C_jacchus3.2.1:19:1:49578535:1	38957214	39100629	R	WD repeat domain 64 [Source:HGNC Symbol;Acc:HGNC:26570]
ENSCJAG00000035984	KNOWN_BY_PROJECTION	protein_coding	RAB43	chromosome:C_jacchus3.2.1:15:1:98464013:1	67877198	67911244	D	RAB43, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:19983]
ENSCJAG00000017461	KNOWN_BY_PROJECTION	protein_coding	GP9	chromosome:C_jacchus3.2.1:15:1:98464013:1	67985509	67987153	R	glycoprotein IX (platelet) [Source:HGNC Symbol;Acc:HGNC:4444]
ENSCJAG00000035426	KNOWN	protein_coding	TMX2	chromosome:C_jacchus3.2.1:11:1:130397257:1	113570521	113584207	D	Thioredoxin-related transmembrane protein 2 isoform 1 {ECO:0000313|EMBL:JAB08754.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015601}  [Source:UniProtKB/TrEMBL;Acc:F7H9V7]
ENSCJAG00000017474	KNOWN_BY_PROJECTION	protein_coding	KIAA1257	chromosome:C_jacchus3.2.1:15:1:98464013:1	68009742	68084006	D	KIAA1257 [Source:HGNC Symbol;Acc:HGNC:29231]
ENSCJAG00000009703	KNOWN_BY_PROJECTION	protein_coding	STAP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	126411387	126451761	R	signal transducing adaptor family member 1 [Source:HGNC Symbol;Acc:HGNC:24133]
ENSCJAG00000017298	KNOWN	protein_coding	OPN3	chromosome:C_jacchus3.2.1:19:1:49578535:1	39112444	39191167	D	Opsin-3 {ECO:0000313|EMBL:JAB24935.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031829}  [Source:UniProtKB/TrEMBL;Acc:F7IH55]
ENSCJAG00000017469	KNOWN_BY_PROJECTION	protein_coding	EFCC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	68009865	68053766	R	EF-hand and coiled-coil domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25692]
ENSCJAG00000019497	NOVEL	protein_coding	ENSCJAG00000019497	chromosome:C_jacchus3.2.1:3:1:190850796:1	126466036	126497583	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047667}  [Source:UniProtKB/TrEMBL;Acc:F7GSB9]
ENSCJAG00000018007	KNOWN_BY_PROJECTION	protein_coding	KIF12	chromosome:C_jacchus3.2.1:1:1:210400635:1	157523005	157531114	R	kinesin family member 12 [Source:HGNC Symbol;Acc:HGNC:21495]
ENSCJAG00000017304	KNOWN_BY_PROJECTION	protein_coding	CHML	chromosome:C_jacchus3.2.1:19:1:49578535:1	39116788	39155006	D	choroideremia-like (Rab escort protein 2) [Source:HGNC Symbol;Acc:HGNC:1941]
ENSCJAG00000017479	NOVEL	protein_coding	ENSCJAG00000017479	chromosome:C_jacchus3.2.1:15:1:98464013:1	68101627	68283923	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032196}  [Source:UniProtKB/TrEMBL;Acc:F7FY76]
ENSCJAG00000017305	KNOWN_BY_PROJECTION	protein_coding	IL37	chromosome:C_jacchus3.2.1:19:1:49578535:1	39135706	39141414	R	interleukin 37 [Source:HGNC Symbol;Acc:HGNC:15563]
ENSCJAG00000008634	NOVEL	protein_coding	ENSCJAG00000008634	chromosome:C_jacchus3.2.1:11:1:130397257:1	113574102	113574627	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7G3J5]
ENSCJAG00000020630	KNOWN_BY_PROJECTION	protein_coding	MAPKBP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	33896567	34117694	R	mitogen-activated protein kinase binding protein 1 [Source:HGNC Symbol;Acc:HGNC:29536]
ENSCJAG00000008629	KNOWN_BY_PROJECTION	protein_coding	BTBD18	chromosome:C_jacchus3.2.1:11:1:130397257:1	113587465	113594539	R	BTB (POZ) domain containing 18 [Source:HGNC Symbol;Acc:HGNC:37214]
ENSCJAG00000015888	KNOWN	protein_coding	ENSCJAG00000015888	chromosome:C_jacchus3.2.1:12:1:121768101:1	81430770	81796928	D	Cytochrome P450 2C18 isoform 1 {ECO:0000313|EMBL:JAB04451.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029284}  [Source:UniProtKB/TrEMBL;Acc:F7IP82]
ENSCJAG00000017490	KNOWN_BY_PROJECTION	protein_coding	ACAD9	chromosome:C_jacchus3.2.1:15:1:98464013:1	68133529	68165012	R	acyl-CoA dehydrogenase family, member 9 [Source:HGNC Symbol;Acc:HGNC:21497]
ENSCJAG00000005011	KNOWN_BY_PROJECTION	protein_coding	MLX	chromosome:C_jacchus3.2.1:5:1:159171411:1	75016001	75020892	D	MLX, MAX dimerization protein [Source:HGNC Symbol;Acc:HGNC:11645]
ENSCJAG00000004997	KNOWN_BY_PROJECTION	protein_coding	PSMC3IP	chromosome:C_jacchus3.2.1:5:1:159171411:1	75021955	75027465	R	PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928]
ENSCJAG00000000655	KNOWN_BY_PROJECTION	protein_coding	C2orf61	chromosome:C_jacchus3.2.1:14:1:108792865:1	60692044	60702600	D	chromosome 2 open reading frame 61 [Source:HGNC Symbol;Acc:HGNC:26850]
ENSCJAG00000002387	KNOWN	protein_coding	IKBIP	chromosome:C_jacchus3.2.1:9:1:124281992:1	88701451	88726570	R	Inhibitor of nuclear factor kappa-B kinase-interacting protein isoform 1 {ECO:0000313|EMBL:JAB05901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004319}  [Source:UniProtKB/TrEMBL;Acc:F7CL44]
ENSCJAG00000015528	NOVEL	pseudogene	ENSCJAG00000015528	chromosome:C_jacchus3.2.1:15:1:98464013:1	68157743	68158582	D	<no descrition>
ENSCJAG00000017519	NOVEL	protein_coding	ENSCJAG00000017519	chromosome:C_jacchus3.2.1:15:1:98464013:1	68177396	68178526	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032261}  [Source:UniProtKB/TrEMBL;Acc:F7DKV3]
ENSCJAG00000035154	NOVEL	protein_coding	ENSCJAG00000035154	chromosome:C_jacchus3.2.1:3:1:190850796:1	126499990	126526457	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036213}  [Source:UniProtKB/TrEMBL;Acc:F7G2L6]
ENSCJAG00000017333	KNOWN_BY_PROJECTION	protein_coding	KMO	chromosome:C_jacchus3.2.1:19:1:49578535:1	39192154	39263713	R	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) [Source:HGNC Symbol;Acc:HGNC:6381]
ENSCJAG00000017521	KNOWN	protein_coding	ENSCJAG00000017521	chromosome:C_jacchus3.2.1:15:1:98464013:1	68228466	68310890	R	Ras-related protein Rab-7a {ECO:0000313|EMBL:JAB11537.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045443}  [Source:UniProtKB/TrEMBL;Acc:F6QQB8]
ENSCJAG00000002341	KNOWN_BY_PROJECTION	protein_coding	APAF1	chromosome:C_jacchus3.2.1:9:1:124281992:1	88726918	88821437	D	apoptotic peptidase activating factor 1 [Source:HGNC Symbol;Acc:HGNC:576]
ENSCJAG00000000656	KNOWN	protein_coding	TTC7A	chromosome:C_jacchus3.2.1:14:1:108792865:1	60748043	60895351	R	Tetratricopeptide repeat protein 7A {ECO:0000313|EMBL:JAB02334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045944}  [Source:UniProtKB/TrEMBL;Acc:F6SR41]
ENSCJAG00000004971	KNOWN	protein_coding	FAM134C	chromosome:C_jacchus3.2.1:5:1:159171411:1	75031294	75060750	R	Protein FAM134C {ECO:0000313|EMBL:JAB04738.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009102}  [Source:UniProtKB/TrEMBL;Acc:F7HUC7]
ENSCJAG00000008475	KNOWN	protein_coding	CTNND1	chromosome:C_jacchus3.2.1:11:1:130397257:1	113596902	113669613	D	Catenin delta-1 isoform 1A {ECO:0000313|EMBL:JAB10927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015875}  [Source:UniProtKB/TrEMBL;Acc:F7G492]
ENSCJAG00000016927	NOVEL	protein_coding	ENSCJAG00000016927	chromosome:C_jacchus3.2.1:3:1:190850796:1	128284038	128300238	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031141}  [Source:UniProtKB/TrEMBL;Acc:F7IPK0]
ENSCJAG00000000668	KNOWN_BY_PROJECTION	protein_coding	MCFD2	chromosome:C_jacchus3.2.1:14:1:108792865:1	60895131	60931044	D	multiple coagulation factor deficiency 2 [Source:HGNC Symbol;Acc:HGNC:18451]
ENSCJAG00000017529	KNOWN	protein_coding	RPN1	chromosome:C_jacchus3.2.1:15:1:98464013:1	68357911	68410227	D	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 {ECO:0000256|RuleBase:RU361143}  [Source:UniProtKB/TrEMBL;Acc:F7FXJ4]
ENSCJAG00000000670	NOVEL	protein_coding	ENSCJAG00000000670	chromosome:C_jacchus3.2.1:14:1:108792865:1	61008128	61010444	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001154}  [Source:UniProtKB/TrEMBL;Acc:F6VJ18]
ENSCJAG00000031938	NOVEL	protein_coding	ENSCJAG00000031938	chromosome:C_jacchus3.2.1:14:1:108792865:1	61019460	61022937	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049283}  [Source:UniProtKB/TrEMBL;Acc:F6UA47]
ENSCJAG00000000673	KNOWN	protein_coding	SOCS5	chromosome:C_jacchus3.2.1:14:1:108792865:1	61073380	61146174	R	Suppressor of cytokine signaling 5 {ECO:0000313|EMBL:JAB03939.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046229}  [Source:UniProtKB/TrEMBL;Acc:F7BU54]
ENSCJAG00000004907	KNOWN	protein_coding	TUBG1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75059661	75118883	D	Tubulin gamma chain {ECO:0000256|RuleBase:RU003506}  [Source:UniProtKB/TrEMBL;Acc:F6TA66]
ENSCJAG00000000678	KNOWN	protein_coding	CRIPT	chromosome:C_jacchus3.2.1:14:1:108792865:1	61218866	61232183	R	Cysteine-rich PDZ-binding protein {ECO:0000313|EMBL:JAB05676.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001165}  [Source:UniProtKB/TrEMBL;Acc:F6UYR8]
ENSCJAG00000004259	KNOWN_BY_PROJECTION	protein_coding	MED20	chromosome:C_jacchus3.2.1:4:1:171630274:1	43136689	43154353	R	mediator complex subunit 20 [Source:HGNC Symbol;Acc:HGNC:16840]
ENSCJAG00000017575	NOVEL	protein_coding	ENSCJAG00000017575	chromosome:C_jacchus3.2.1:15:1:98464013:1	68456308	68456708	D	<no descrition>
ENSCJAG00000011732	KNOWN	protein_coding	GATA2	chromosome:C_jacchus3.2.1:15:1:98464013:1	68540993	68555927	D	Endothelial transcription factor GATA-2 isoform 1 {ECO:0000313|EMBL:JAB09073.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038400}  [Source:UniProtKB/TrEMBL;Acc:F7HXJ7]
ENSCJAG00000020565	KNOWN_BY_PROJECTION	protein_coding	EPHA5	chromosome:C_jacchus3.2.1:3:1:190850796:1	128369644	128731527	D	EPH receptor A5 [Source:HGNC Symbol;Acc:HGNC:3389]
ENSCJAG00000000680	KNOWN	protein_coding	PIGF	chromosome:C_jacchus3.2.1:14:1:108792865:1	61232290	61269473	D	Phosphatidylinositol-glycan biosynthesis class F protein isoform 1 {ECO:0000313|EMBL:JAB10109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001177}  [Source:UniProtKB/TrEMBL;Acc:F6UXU0]
ENSCJAG00000022766	KNOWN_BY_PROJECTION	protein_coding	DNAJB8	chromosome:C_jacchus3.2.1:15:1:98464013:1	68570627	68576261	D	DnaJ (Hsp40) homolog, subfamily B, member 8 [Source:HGNC Symbol;Acc:HGNC:23699]
ENSCJAG00000005387	KNOWN_BY_PROJECTION	protein_coding	EEFSEC	chromosome:C_jacchus3.2.1:15:1:98464013:1	68630144	68893520	R	eukaryotic elongation factor, selenocysteine-tRNA-specific [Source:HGNC Symbol;Acc:HGNC:24614]
ENSCJAG00000000685	KNOWN	protein_coding	RHOQ	chromosome:C_jacchus3.2.1:14:1:108792865:1	61266070	61308743	R	Rho-related GTP-binding protein RhoQ {ECO:0000313|EMBL:JAB10110.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001193}  [Source:UniProtKB/TrEMBL;Acc:F7CG97]
ENSCJAG00000017359	KNOWN	protein_coding	FH	chromosome:C_jacchus3.2.1:19:1:49578535:1	39275026	39294253	D	Fumarate hydratase, mitochondrial {ECO:0000313|EMBL:JAB05258.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031992}  [Source:UniProtKB/TrEMBL;Acc:F7IP12]
ENSCJAG00000018027	NOVEL	protein_coding	ENSCJAG00000018027	chromosome:C_jacchus3.2.1:1:1:210400635:1	157591108	157713830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033306}  [Source:UniProtKB/TrEMBL;Acc:F6PTW7]
ENSCJAG00000004266	KNOWN	protein_coding	BYSL	chromosome:C_jacchus3.2.1:4:1:171630274:1	43154441	43166231	D	Bystin {ECO:0000313|EMBL:JAB03123.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007741}  [Source:UniProtKB/TrEMBL;Acc:F6XKE7]
ENSCJAG00000017377	NOVEL	pseudogene	ENSCJAG00000017377	chromosome:C_jacchus3.2.1:19:1:49578535:1	39402738	39403030	D	<no descrition>
ENSCJAG00000017439	NOVEL	pseudogene	ENSCJAG00000017439	chromosome:C_jacchus3.2.1:19:1:49578535:1	39521467	39521903	D	<no descrition>
ENSCJAG00000000696	KNOWN_BY_PROJECTION	protein_coding	ATP6V1E2	chromosome:C_jacchus3.2.1:14:1:108792865:1	61350071	61375646	D	ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 [Source:HGNC Symbol;Acc:HGNC:18125]
ENSCJAG00000000699	KNOWN_BY_PROJECTION	protein_coding	TMEM247	chromosome:C_jacchus3.2.1:14:1:108792865:1	61404353	61409124	R	transmembrane protein 247 [Source:HGNC Symbol;Acc:HGNC:42967]
ENSCJAG00000005310	KNOWN	protein_coding	RUVBL1	chromosome:C_jacchus3.2.1:15:1:98464013:1	68893079	68984908	D	RuvB-like 1 {ECO:0000313|EMBL:JAB11689.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009783}  [Source:UniProtKB/TrEMBL;Acc:F7GWQ2]
ENSCJAG00000020473	KNOWN_BY_PROJECTION	protein_coding	AKNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	157717823	157754958	R	AT-hook transcription factor [Source:HGNC Symbol;Acc:HGNC:24108]
ENSCJAG00000000700	KNOWN	protein_coding	EPAS1	chromosome:C_jacchus3.2.1:14:1:108792865:1	61498259	61588071	R	Endothelial PAS domain-containing protein 1 {ECO:0000313|EMBL:JAB09868.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001230}  [Source:UniProtKB/TrEMBL;Acc:F6ZHN9]
ENSCJAG00000002273	KNOWN	protein_coding	ANKS1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	88823559	90161142	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004147}  [Source:UniProtKB/TrEMBL;Acc:F7C703]
ENSCJAG00000017379	KNOWN_BY_PROJECTION	protein_coding	RGS7	chromosome:C_jacchus3.2.1:19:1:49578535:1	39624980	39972789	D	regulator of G-protein signaling 7 [Source:HGNC Symbol;Acc:HGNC:10003]
ENSCJAG00000020462	KNOWN	protein_coding	DFNB31	chromosome:C_jacchus3.2.1:1:1:210400635:1	157771199	157876404	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038033}  [Source:UniProtKB/TrEMBL;Acc:F7HQW5]
ENSCJAG00000031322	NOVEL	protein_coding	ENSCJAG00000031322	chromosome:C_jacchus3.2.1:1:1:210400635:1	157878191	157878642	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044513}  [Source:UniProtKB/TrEMBL;Acc:F7GQX0]
ENSCJAG00000004284	KNOWN	protein_coding	CCND3	chromosome:C_jacchus3.2.1:4:1:171630274:1	43168761	43279705	R	G1/S-specific cyclin-D3 isoform 2 {ECO:0000313|EMBL:JAB04030.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007757}  [Source:UniProtKB/TrEMBL;Acc:F6XJP1]
ENSCJAG00000020461	KNOWN	protein_coding	ATP6V1G1	chromosome:C_jacchus3.2.1:1:1:210400635:1	157960995	157971669	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051251}; V-type proton ATPase subunit G 1 {ECO:0000313|EMBL:JAB14941.1}  [Source:UniProtKB/TrEMBL;Acc:F6VKM1]
ENSCJAG00000005358	KNOWN	protein_coding	SEC61A1	chromosome:C_jacchus3.2.1:15:1:98464013:1	68978402	68994268	R	Protein transport protein Sec61 subunit alpha isoform 1 {ECO:0000313|EMBL:JAB11553.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009838}  [Source:UniProtKB/TrEMBL;Acc:F7F6Y9]
ENSCJAG00000020458	KNOWN_BY_PROJECTION	protein_coding	C9orf91	chromosome:C_jacchus3.2.1:1:1:210400635:1	157988862	158018000	D	chromosome 9 open reading frame 91 [Source:HGNC Symbol;Acc:HGNC:24513]
ENSCJAG00000020457	KNOWN	protein_coding	TNFSF15	chromosome:C_jacchus3.2.1:1:1:210400635:1	158153773	158171083	R	Tumor necrosis factor ligand superfamily member 15 isoform VEGI-251 {ECO:0000313|EMBL:JAB03145.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038015}  [Source:UniProtKB/TrEMBL;Acc:F7HVJ8]
ENSCJAG00000013518	KNOWN_BY_PROJECTION	protein_coding	TUBG2	chromosome:C_jacchus3.2.1:5:1:159171411:1	75111180	75121343	D	tubulin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:12419]
ENSCJAG00000004292	KNOWN	protein_coding	TAF8	chromosome:C_jacchus3.2.1:4:1:171630274:1	43282329	43306443	D	Transcription initiation factor TFIID subunit 8 {ECO:0000313|EMBL:JAB24030.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007772}  [Source:UniProtKB/TrEMBL;Acc:F6WY31]
ENSCJAG00000020456	NOVEL	pseudogene	ENSCJAG00000020456	chromosome:C_jacchus3.2.1:1:1:210400635:1	158183683	158185373	R	<no descrition>
ENSCJAG00000033488	NOVEL	protein_coding	ENSCJAG00000033488	chromosome:C_jacchus3.2.1:1:1:210400635:1	158225009	158226250	D	Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}  [Source:UniProtKB/TrEMBL;Acc:F6V0Q6]
ENSCJAG00000020453	KNOWN_BY_PROJECTION	protein_coding	TNFSF8	chromosome:C_jacchus3.2.1:1:1:210400635:1	158273777	158302060	R	tumor necrosis factor (ligand) superfamily, member 8 [Source:HGNC Symbol;Acc:HGNC:11938]
ENSCJAG00000005305	KNOWN_BY_PROJECTION	protein_coding	KBTBD12	chromosome:C_jacchus3.2.1:15:1:98464013:1	69044427	69112037	R	kelch repeat and BTB (POZ) domain containing 12 [Source:HGNC Symbol;Acc:HGNC:25731]
ENSCJAG00000015819	KNOWN_BY_PROJECTION	protein_coding	HELLS	chromosome:C_jacchus3.2.1:12:1:121768101:1	81459625	81515414	D	helicase, lymphoid-specific [Source:HGNC Symbol;Acc:HGNC:4861]
ENSCJAG00000004301	KNOWN	protein_coding	GUCA1A	chromosome:C_jacchus3.2.1:4:1:171630274:1	43414128	43432853	D	Guanylyl cyclase-activating protein 1 {ECO:0000313|EMBL:JAB13359.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007819}  [Source:UniProtKB/TrEMBL;Acc:F6UKU3]
ENSCJAG00000013486	KNOWN	protein_coding	PLEKHH3	chromosome:C_jacchus3.2.1:5:1:159171411:1	75119870	75131332	R	Pleckstrin homology domain-containing family H member 3 {ECO:0000313|EMBL:JAB11092.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024846}  [Source:UniProtKB/TrEMBL;Acc:F6TWG4]
ENSCJAG00000005274	KNOWN_BY_PROJECTION	protein_coding	MGLL	chromosome:C_jacchus3.2.1:15:1:98464013:1	69112955	69363162	D	monoglyceride lipase [Source:HGNC Symbol;Acc:HGNC:17038]
ENSCJAG00000000724	KNOWN_BY_PROJECTION	protein_coding	PRKCE	chromosome:C_jacchus3.2.1:14:1:108792865:1	61692617	61911568	R	protein kinase C, epsilon [Source:HGNC Symbol;Acc:HGNC:9401]
ENSCJAG00000004324	KNOWN_BY_PROJECTION	protein_coding	GUCA1B	chromosome:C_jacchus3.2.1:4:1:171630274:1	43437049	43451519	R	guanylate cyclase activator 1B (retina) [Source:HGNC Symbol;Acc:HGNC:4679]
ENSCJAG00000034824	NOVEL	protein_coding	ENSCJAG00000034824	chromosome:C_jacchus3.2.1:14:1:108792865:1	62252884	62253581	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050690}  [Source:UniProtKB/TrEMBL;Acc:F7GDM1]
ENSCJAG00000004335	KNOWN_BY_PROJECTION	protein_coding	MRPS10	chromosome:C_jacchus3.2.1:4:1:171630274:1	43463167	43474948	R	mitochondrial ribosomal protein S10 [Source:HGNC Symbol;Acc:HGNC:14502]
ENSCJAG00000017444	NOVEL	protein_coding	ENSCJAG00000017444	chromosome:C_jacchus3.2.1:19:1:49578535:1	39768977	39769313	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032124}  [Source:UniProtKB/TrEMBL;Acc:F7GL87]
ENSCJAG00000014471	NOVEL	pseudogene	ENSCJAG00000014471	chromosome:C_jacchus3.2.1:19:1:49578535:1	40079416	40079720	D	<no descrition>
ENSCJAG00000021915	KNOWN	protein_coding	GREM2	chromosome:C_jacchus3.2.1:19:1:49578535:1	40096614	40224911	D	Gremlin-2 {ECO:0000313|EMBL:JAB13227.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040599}  [Source:UniProtKB/TrEMBL;Acc:F7IL92]
ENSCJAG00000005251	KNOWN	protein_coding	ABTB1	chromosome:C_jacchus3.2.1:15:1:98464013:1	69370721	69380528	R	Ankyrin repeat and BTB/POZ domain-containing protein 1 isoform 2 {ECO:0000313|EMBL:JAB30731.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009625}  [Source:UniProtKB/TrEMBL;Acc:F7GBH4]
ENSCJAG00000020575	KNOWN_BY_PROJECTION	protein_coding	TECRL	chromosome:C_jacchus3.2.1:3:1:190850796:1	129594949	129714048	D	trans-2,3-enoyl-CoA reductase-like [Source:HGNC Symbol;Acc:HGNC:27365]
ENSCJAG00000000727	KNOWN_BY_PROJECTION	protein_coding	SRBD1	chromosome:C_jacchus3.2.1:14:1:108792865:1	62298874	62543444	D	S1 RNA binding domain 1 [Source:HGNC Symbol;Acc:HGNC:25521]
ENSCJAG00000020421	KNOWN_BY_PROJECTION	protein_coding	TNC	chromosome:C_jacchus3.2.1:1:1:210400635:1	158391028	158486292	R	tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
ENSCJAG00000017446	KNOWN_BY_PROJECTION	protein_coding	FMN2	chromosome:C_jacchus3.2.1:19:1:49578535:1	40242979	40654494	R	formin 2 [Source:HGNC Symbol;Acc:HGNC:14074]
ENSCJAG00000020576	KNOWN_BY_PROJECTION	protein_coding	LPHN3	chromosome:C_jacchus3.2.1:3:1:190850796:1	131673910	132045709	R	latrophilin 3 [Source:HGNC Symbol;Acc:HGNC:20974]
ENSCJAG00000031482	NOVEL	pseudogene	ENSCJAG00000031482	chromosome:C_jacchus3.2.1:3:1:190850796:1	132883446	132883795	R	<no descrition>
ENSCJAG00000032075	NOVEL	pseudogene	ENSCJAG00000032075	chromosome:C_jacchus3.2.1:3:1:190850796:1	133186416	133187673	R	<no descrition>
ENSCJAG00000004202	KNOWN	protein_coding	IGFBP7	chromosome:C_jacchus3.2.1:3:1:190850796:1	136399422	136487995	D	Insulin-like growth factor-binding protein 7 isoform 1 {ECO:0000313|EMBL:JAB41453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007661}  [Source:UniProtKB/TrEMBL;Acc:F6TNS4]
ENSCJAG00000013482	KNOWN_BY_PROJECTION	protein_coding	CCR10	chromosome:C_jacchus3.2.1:5:1:159171411:1	75134530	75136952	R	chemokine (C-C motif) receptor 10 [Source:HGNC Symbol;Acc:HGNC:4474]
ENSCJAG00000002335	KNOWN_BY_PROJECTION	protein_coding	FAM71C	chromosome:C_jacchus3.2.1:9:1:124281992:1	89778680	89786987	D	family with sequence similarity 71, member C [Source:HGNC Symbol;Acc:HGNC:28594]
ENSCJAG00000005226	KNOWN	protein_coding	PODXL2	chromosome:C_jacchus3.2.1:15:1:98464013:1	69380703	69414788	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009581}  [Source:UniProtKB/TrEMBL;Acc:F7H2C9]
ENSCJAG00000004347	KNOWN	protein_coding	TRERF1	chromosome:C_jacchus3.2.1:4:1:171630274:1	43482892	43729048	R	Transcriptional-regulating factor 1 {ECO:0000313|EMBL:JAB23466.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007963}  [Source:UniProtKB/TrEMBL;Acc:F6Z8Z4]
ENSCJAG00000002270	NOVEL	protein_coding	ENSCJAG00000002270	chromosome:C_jacchus3.2.1:9:1:124281992:1	90189478	90190268	R	40S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116}  [Source:UniProtKB/TrEMBL;Acc:F6WBN1]
ENSCJAG00000008474	NOVEL	protein_coding	ENSCJAG00000008474	chromosome:C_jacchus3.2.1:11:1:130397257:1	113714684	113716079	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015589}  [Source:UniProtKB/TrEMBL;Acc:F7DCS2]
ENSCJAG00000008472	NOVEL	protein_coding	ENSCJAG00000008472	chromosome:C_jacchus3.2.1:11:1:130397257:1	113780590	113781521	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7DCU1]
ENSCJAG00000036934	NOVEL	pseudogene	ENSCJAG00000036934	chromosome:C_jacchus3.2.1:11:1:130397257:1	113949935	113950268	D	<no descrition>
ENSCJAG00000031342	KNOWN_BY_PROJECTION	protein_coding	OR9Q2	chromosome:C_jacchus3.2.1:11:1:130397257:1	113987468	113989001	D	olfactory receptor, family 9, subfamily Q, member 2 [Source:HGNC Symbol;Acc:HGNC:15328]
ENSCJAG00000008464	NOVEL	protein_coding	ENSCJAG00000008464	chromosome:C_jacchus3.2.1:11:1:130397257:1	114011243	114012201	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6S9R8]
ENSCJAG00000008461	KNOWN_BY_PROJECTION	protein_coding	OR5B3	chromosome:C_jacchus3.2.1:11:1:130397257:1	114201461	114202625	R	olfactory receptor, family 5, subfamily B, member 3 [Source:HGNC Symbol;Acc:HGNC:8324]
ENSCJAG00000000735	KNOWN	protein_coding	SIX2	chromosome:C_jacchus3.2.1:14:1:108792865:1	62916656	62920863	D	Homeobox protein SIX2 {ECO:0000313|EMBL:JAB01616.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001255}  [Source:UniProtKB/TrEMBL;Acc:F6Z031]
ENSCJAG00000008449	KNOWN	protein_coding	LPXN	chromosome:C_jacchus3.2.1:11:1:130397257:1	114303042	114347737	R	Leupaxin isoform 2 {ECO:0000313|EMBL:JAB15796.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015568}  [Source:UniProtKB/TrEMBL;Acc:F7DU82]
ENSCJAG00000000736	KNOWN_BY_PROJECTION	protein_coding	SIX3	chromosome:C_jacchus3.2.1:14:1:108792865:1	62992933	62997480	R	SIX homeobox 3 [Source:HGNC Symbol;Acc:HGNC:10889]
ENSCJAG00000008943	KNOWN	protein_coding	MCM2	chromosome:C_jacchus3.2.1:15:1:98464013:1	69581805	69607179	R	DNA replication licensing factor MCM2 {ECO:0000313|EMBL:JAB02058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016372}  [Source:UniProtKB/TrEMBL;Acc:F7A6M8]
ENSCJAG00000000742	NOVEL	protein_coding	ENSCJAG00000000742	chromosome:C_jacchus3.2.1:14:1:108792865:1	63082823	63083617	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052324}  [Source:UniProtKB/TrEMBL;Acc:F7HQX4]
ENSCJAG00000000749	KNOWN_BY_PROJECTION	protein_coding	CAMKMT	chromosome:C_jacchus3.2.1:14:1:108792865:1	63171439	63582501	R	calmodulin-lysine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:26276]
ENSCJAG00000004118	KNOWN	protein_coding	POLR2B	chromosome:C_jacchus3.2.1:3:1:190850796:1	136487915	136579235	R	DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}  [Source:UniProtKB/TrEMBL;Acc:F6PQF5]
ENSCJAG00000000747	NOVEL	pseudogene	ENSCJAG00000000747	chromosome:C_jacchus3.2.1:14:1:108792865:1	63291918	63292770	R	<no descrition>
ENSCJAG00000008421	NOVEL	protein_coding	ENSCJAG00000008421	chromosome:C_jacchus3.2.1:11:1:130397257:1	114348742	114396706	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044938}  [Source:UniProtKB/TrEMBL;Acc:F7GIY8]
ENSCJAG00000008411	KNOWN_BY_PROJECTION	protein_coding	GLYAT	chromosome:C_jacchus3.2.1:11:1:130397257:1	114450435	114482075	R	glycine-N-acyltransferase [Source:HGNC Symbol;Acc:HGNC:13734]
ENSCJAG00000013311	KNOWN	protein_coding	EZH1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75155321	75201496	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024612}  [Source:UniProtKB/TrEMBL;Acc:F6QA88]
ENSCJAG00000008404	KNOWN_BY_PROJECTION	protein_coding	GLYATL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	114566076	114578131	R	glycine-N-acyltransferase-like 2 [Source:HGNC Symbol;Acc:HGNC:24178]
ENSCJAG00000000754	KNOWN	protein_coding	PREPL	chromosome:C_jacchus3.2.1:14:1:108792865:1	63582613	63641622	D	Prolyl endopeptidase-like isoform 1 {ECO:0000313|EMBL:JAB06887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001295}  [Source:UniProtKB/TrEMBL;Acc:F6X8R7]
ENSCJAG00000008960	KNOWN	protein_coding	TPRA1	chromosome:C_jacchus3.2.1:15:1:98464013:1	69614101	69627293	D	Transmembrane protein adipocyte-associated 1 isoform 1 {ECO:0000313|EMBL:JAB05248.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016426}  [Source:UniProtKB/TrEMBL;Acc:F6Y3P4]
ENSCJAG00000008395	KNOWN_BY_PROJECTION	protein_coding	GLYATL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	114612676	114625991	D	glycine-N-acyltransferase-like 1 [Source:HGNC Symbol;Acc:HGNC:30519]
ENSCJAG00000020418	KNOWN_BY_PROJECTION	protein_coding	DEC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	158793401	158794367	D	deleted in esophageal cancer 1 [Source:HGNC Symbol;Acc:HGNC:23658]
ENSCJAG00000020657	KNOWN_BY_PROJECTION	protein_coding	EHD4	chromosome:C_jacchus3.2.1:10:1:132174527:1	33931379	33983393	D	EH-domain containing 4 [Source:HGNC Symbol;Acc:HGNC:3245]
ENSCJAG00000011425	NOVEL	protein_coding	ENSCJAG00000011425	chromosome:C_jacchus3.2.1:15:1:98464013:1	70040590	70049265	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043257}  [Source:UniProtKB/TrEMBL;Acc:F7IAE8]
ENSCJAG00000033140	NOVEL	protein_coding	ENSCJAG00000033140	chromosome:C_jacchus3.2.1:15:1:98464013:1	70048592	70049297	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034928}  [Source:UniProtKB/TrEMBL;Acc:F7ICU8]
ENSCJAG00000017467	NOVEL	pseudogene	ENSCJAG00000017467	chromosome:C_jacchus3.2.1:19:1:49578535:1	40715120	40715700	R	<no descrition>
ENSCJAG00000017470	KNOWN_BY_PROJECTION	protein_coding	CHRM3	chromosome:C_jacchus3.2.1:19:1:49578535:1	40778890	40868179	R	cholinergic receptor, muscarinic 3 [Source:HGNC Symbol;Acc:HGNC:1952]
ENSCJAG00000002230	KNOWN	protein_coding	UHRF1BP1L	chromosome:C_jacchus3.2.1:9:1:124281992:1	90215832	90312165	R	UHRF1-binding protein 1-like isoform a {ECO:0000313|EMBL:JAB11189.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004081}  [Source:UniProtKB/TrEMBL;Acc:F6WBR3]
ENSCJAG00000017476	NOVEL	pseudogene	ENSCJAG00000017476	chromosome:C_jacchus3.2.1:19:1:49578535:1	41596660	41597531	D	<no descrition>
ENSCJAG00000020401	KNOWN_BY_PROJECTION	protein_coding	PAPPA	chromosome:C_jacchus3.2.1:1:1:210400635:1	159590991	159848915	D	pregnancy-associated plasma protein A, pappalysin 1 [Source:HGNC Symbol;Acc:HGNC:8602]
ENSCJAG00000020664	KNOWN_BY_PROJECTION	protein_coding	SPTBN5	chromosome:C_jacchus3.2.1:10:1:132174527:1	33998288	34045066	D	spectrin, beta, non-erythrocytic 5 [Source:HGNC Symbol;Acc:HGNC:15680]
ENSCJAG00000011377	KNOWN_BY_PROJECTION	protein_coding	PLXNA1	chromosome:C_jacchus3.2.1:15:1:98464013:1	70173323	70223713	R	plexin A1 [Source:HGNC Symbol;Acc:HGNC:9099]
ENSCJAG00000008394	NOVEL	pseudogene	ENSCJAG00000008394	chromosome:C_jacchus3.2.1:11:1:130397257:1	114630561	114631294	R	<no descrition>
ENSCJAG00000008367	NOVEL	protein_coding	ENSCJAG00000008367	chromosome:C_jacchus3.2.1:11:1:130397257:1	114691193	114701184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015426}  [Source:UniProtKB/TrEMBL;Acc:F7GZP1]
ENSCJAG00000032132	NOVEL	protein_coding	ENSCJAG00000032132	chromosome:C_jacchus3.2.1:11:1:130397257:1	114717730	114722326	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047485}  [Source:UniProtKB/TrEMBL;Acc:F7IDD7]
ENSCJAG00000015917	NOVEL	pseudogene	ENSCJAG00000015917	chromosome:C_jacchus3.2.1:12:1:121768101:1	81732780	81733422	R	<no descrition>
ENSCJAG00000011355	KNOWN	protein_coding	CHCHD6	chromosome:C_jacchus3.2.1:15:1:98464013:1	70251380	70498151	R	Coiled-coil-helix-coiled-coil-helix domain-containing protein 6, mitochondrial {ECO:0000313|EMBL:JAB12223.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020908}  [Source:UniProtKB/TrEMBL;Acc:F7HBA6]
ENSCJAG00000008349	KNOWN_BY_PROJECTION	protein_coding	DTX4	chromosome:C_jacchus3.2.1:11:1:130397257:1	114746164	114782337	D	deltex 4, E3 ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:29151]
ENSCJAG00000000766	KNOWN_BY_PROJECTION	protein_coding	SLC3A1	chromosome:C_jacchus3.2.1:14:1:108792865:1	63636858	63690829	R	solute carrier family 3 (amino acid transporter heavy chain), member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
ENSCJAG00000011289	NOVEL	protein_coding	ENSCJAG00000011289	chromosome:C_jacchus3.2.1:15:1:98464013:1	70536356	70580928	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020867}  [Source:UniProtKB/TrEMBL;Acc:F7DYJ0]
ENSCJAG00000031682	NOVEL	pseudogene	ENSCJAG00000031682	chromosome:C_jacchus3.2.1:11:1:130397257:1	114788104	114790466	R	<no descrition>
ENSCJAG00000008346	NOVEL	protein_coding	ENSCJAG00000008346	chromosome:C_jacchus3.2.1:11:1:130397257:1	114794111	114796339	R	L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496}  [Source:UniProtKB/TrEMBL;Acc:F7HYB3]
ENSCJAG00000015920	KNOWN	protein_coding	CYP	chromosome:C_jacchus3.2.1:12:1:121768101:1	81816443	81936516	R	Callithrix jacchus cytochrome P450 2C8 (CYP2C8), mRNA. [Source:RefSeq mRNA;Acc:NM_001204437]
ENSCJAG00000008342	NOVEL	pseudogene	ENSCJAG00000008342	chromosome:C_jacchus3.2.1:11:1:130397257:1	114839045	114839634	R	<no descrition>
ENSCJAG00000008333	NOVEL	pseudogene	ENSCJAG00000008333	chromosome:C_jacchus3.2.1:11:1:130397257:1	114879838	114882384	R	<no descrition>
ENSCJAG00000011278	KNOWN_BY_PROJECTION	protein_coding	C3orf22	chromosome:C_jacchus3.2.1:15:1:98464013:1	70622941	70626348	D	chromosome 3 open reading frame 22 [Source:HGNC Symbol;Acc:HGNC:28534]
ENSCJAG00000016126	NOVEL	pseudogene	ENSCJAG00000016126	chromosome:C_jacchus3.2.1:11:1:130397257:1	114982551	114983588	D	<no descrition>
ENSCJAG00000016129	NOVEL	pseudogene	ENSCJAG00000016129	chromosome:C_jacchus3.2.1:11:1:130397257:1	115017519	115018428	D	<no descrition>
ENSCJAG00000011270	KNOWN_BY_PROJECTION	protein_coding	CHST13	chromosome:C_jacchus3.2.1:15:1:98464013:1	70633367	70649961	R	carbohydrate (chondroitin 4) sulfotransferase 13 [Source:HGNC Symbol;Acc:HGNC:21755]
ENSCJAG00000017504	KNOWN_BY_PROJECTION	protein_coding	RYR2	chromosome:C_jacchus3.2.1:19:1:49578535:1	42425268	43120875	R	ryanodine receptor 2 (cardiac) [Source:HGNC Symbol;Acc:HGNC:10484]
ENSCJAG00000034319	KNOWN_BY_PROJECTION	protein_coding	UROC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	70656814	70694030	D	urocanate hydratase 1 [Source:HGNC Symbol;Acc:HGNC:26444]
ENSCJAG00000016132	KNOWN_BY_PROJECTION	protein_coding	OSBP	chromosome:C_jacchus3.2.1:11:1:130397257:1	115095650	115138580	R	oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
ENSCJAG00000004102	KNOWN_BY_PROJECTION	protein_coding	NOA1	chromosome:C_jacchus3.2.1:3:1:190850796:1	136557647	136571939	D	nitric oxide associated 1 [Source:HGNC Symbol;Acc:HGNC:28473]
ENSCJAG00000034129	NOVEL	protein_coding	ENSCJAG00000034129	chromosome:C_jacchus3.2.1:3:1:190850796:1	136559347	136570620	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010012}  [Source:UniProtKB/TrEMBL;Acc:F7CR38]
ENSCJAG00000004081	KNOWN_BY_PROJECTION	protein_coding	REST	chromosome:C_jacchus3.2.1:3:1:190850796:1	136592255	136617439	R	RE1-silencing transcription factor [Source:HGNC Symbol;Acc:HGNC:9966]
ENSCJAG00000020668	KNOWN	protein_coding	ENSCJAG00000020668	chromosome:C_jacchus3.2.1:10:1:132174527:1	34046965	34064782	R	Callithrix jacchus jumonji domain containing 7 (JMJD7), mRNA. [Source:RefSeq mRNA;Acc:NM_001204228]
ENSCJAG00000006974	KNOWN_BY_PROJECTION	protein_coding	ZXDC	chromosome:C_jacchus3.2.1:15:1:98464013:1	70700901	70738184	D	ZXD family zinc finger C [Source:HGNC Symbol;Acc:HGNC:28160]
ENSCJAG00000002192	KNOWN	protein_coding	ACTR6	chromosome:C_jacchus3.2.1:9:1:124281992:1	90363265	90386149	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003995}  [Source:UniProtKB/TrEMBL;Acc:F7DAR0]
ENSCJAG00000020398	NOVEL	protein_coding	ENSCJAG00000020398	chromosome:C_jacchus3.2.1:1:1:210400635:1	159845990	159847236	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037918}  [Source:UniProtKB/TrEMBL;Acc:F6VWY8]
ENSCJAG00000037623	NOVEL	protein_coding	ENSCJAG00000037623	chromosome:C_jacchus3.2.1:1:1:210400635:1	159847051	159848915	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043648}  [Source:UniProtKB/TrEMBL;Acc:F7I7U2]
ENSCJAG00000006945	KNOWN	protein_coding	CCDC37	chromosome:C_jacchus3.2.1:15:1:98464013:1	70739874	70793424	R	Coiled-coil domain-containing protein 37 {ECO:0000313|EMBL:JAB13600.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012909}  [Source:UniProtKB/TrEMBL;Acc:F6S239]
ENSCJAG00000006941	KNOWN	protein_coding	KLF15	chromosome:C_jacchus3.2.1:15:1:98464013:1	70826764	70841595	D	Krueppel-like factor 15 {ECO:0000313|EMBL:JAB08631.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012847}  [Source:UniProtKB/TrEMBL;Acc:F6PM52]
ENSCJAG00000015911	NOVEL	protein_coding	ENSCJAG00000015911	chromosome:C_jacchus3.2.1:12:1:121768101:1	81829507	81842283	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046669}  [Source:UniProtKB/TrEMBL;Acc:F7IK70]
ENSCJAG00000015961	NOVEL	protein_coding	ENSCJAG00000015961	chromosome:C_jacchus3.2.1:12:1:121768101:1	82074605	82104473	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029395}  [Source:UniProtKB/TrEMBL;Acc:F7I328]
ENSCJAG00000013296	KNOWN_BY_PROJECTION	protein_coding	RAMP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	75220186	75222481	D	receptor (G protein-coupled) activity modifying protein 2 [Source:HGNC Symbol;Acc:HGNC:9844]
ENSCJAG00000002976	NOVEL	pseudogene	ENSCJAG00000002976	chromosome:C_jacchus3.2.1:3:1:190850796:1	136676260	136676672	R	<no descrition>
ENSCJAG00000000781	KNOWN	protein_coding	PPM1B	chromosome:C_jacchus3.2.1:14:1:108792865:1	63735632	63810627	R	Protein phosphatase 1B isoform 2 {ECO:0000313|EMBL:JAB06208.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001343}  [Source:UniProtKB/TrEMBL;Acc:F7CEC1]
ENSCJAG00000003516	KNOWN_BY_PROJECTION	protein_coding	SPINK2	chromosome:C_jacchus3.2.1:3:1:190850796:1	136681327	136731556	D	serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) [Source:HGNC Symbol;Acc:HGNC:11245]
ENSCJAG00000013276	KNOWN	protein_coding	VPS25	chromosome:C_jacchus3.2.1:5:1:159171411:1	75233379	75240890	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024397}  [Source:UniProtKB/TrEMBL;Acc:F7GMS0]
ENSCJAG00000001310	NOVEL	protein_coding	ENSCJAG00000001310	chromosome:C_jacchus3.2.1:3:1:190850796:1	136766837	136767585	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002301}  [Source:UniProtKB/TrEMBL;Acc:F7IL74]
ENSCJAG00000006865	KNOWN_BY_PROJECTION	protein_coding	ALDH1L1	chromosome:C_jacchus3.2.1:15:1:98464013:1	70989979	71075220	D	aldehyde dehydrogenase 1 family, member L1 [Source:HGNC Symbol;Acc:HGNC:3978]
ENSCJAG00000020386	KNOWN	protein_coding	ASTN2	chromosome:C_jacchus3.2.1:1:1:210400635:1	159876280	160926585	R	Astrotactin-2 isoform a {ECO:0000313|EMBL:JAB29936.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037908}  [Source:UniProtKB/TrEMBL;Acc:F6WG56]
ENSCJAG00000012772	KNOWN_BY_PROJECTION	protein_coding	HOPX	chromosome:C_jacchus3.2.1:3:1:190850796:1	136867243	136899008	D	HOP homeobox [Source:HGNC Symbol;Acc:HGNC:24961]
ENSCJAG00000004398	NOVEL	pseudogene	ENSCJAG00000004398	chromosome:C_jacchus3.2.1:4:1:171630274:1	43630340	43630445	D	<no descrition>
ENSCJAG00000013197	KNOWN_BY_PROJECTION	protein_coding	WNK4	chromosome:C_jacchus3.2.1:5:1:159171411:1	75241976	75258053	D	WNK lysine deficient protein kinase 4 [Source:HGNC Symbol;Acc:HGNC:14544]
ENSCJAG00000015969	KNOWN	protein_coding	PDLIM1	chromosome:C_jacchus3.2.1:12:1:121768101:1	82262734	82300661	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029411}  [Source:UniProtKB/TrEMBL;Acc:F7HYB2]
ENSCJAG00000006850	KNOWN_BY_PROJECTION	protein_coding	SLC41A3	chromosome:C_jacchus3.2.1:15:1:98464013:1	71084475	71153363	D	solute carrier family 41, member 3 [Source:HGNC Symbol;Acc:HGNC:31046]
ENSCJAG00000004399	KNOWN_BY_PROJECTION	protein_coding	UBR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	43881240	43957770	D	ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:HGNC:21289]
ENSCJAG00000017477	KNOWN_BY_PROJECTION	protein_coding	ZP4	chromosome:C_jacchus3.2.1:19:1:49578535:1	42486297	42494426	D	zona pellucida glycoprotein 4 [Source:HGNC Symbol;Acc:HGNC:15770]
ENSCJAG00000017998	KNOWN	protein_coding	SRP72	chromosome:C_jacchus3.2.1:3:1:190850796:1	137034434	137070291	R	Signal recognition particle subunit SRP72 {ECO:0000256|PIRNR:PIRNR038922}  [Source:UniProtKB/TrEMBL;Acc:F6QGK4]
ENSCJAG00000016188	NOVEL	protein_coding	ENSCJAG00000016188	chromosome:C_jacchus3.2.1:11:1:130397257:1	115139829	115143727	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029799}  [Source:UniProtKB/TrEMBL;Acc:F7I531]
ENSCJAG00000006828	KNOWN	protein_coding	OSBPL11	chromosome:C_jacchus3.2.1:15:1:98464013:1	71270101	71352112	D	Oxysterol-binding protein {ECO:0000256|RuleBase:RU003845}  [Source:UniProtKB/TrEMBL;Acc:F6U8U2]
ENSCJAG00000013195	NOVEL	protein_coding	ENSCJAG00000013195	chromosome:C_jacchus3.2.1:5:1:159171411:1	75256156	75260122	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024225}  [Source:UniProtKB/TrEMBL;Acc:F7GF20]
ENSCJAG00000013189	KNOWN_BY_PROJECTION	protein_coding	CNTD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75260268	75272642	D	cyclin N-terminal domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26847]
ENSCJAG00000000791	NOVEL	protein_coding	ENSCJAG00000000791	chromosome:C_jacchus3.2.1:14:1:108792865:1	63895005	63896361	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001347}  [Source:UniProtKB/TrEMBL;Acc:F7C0E7]
ENSCJAG00000018022	KNOWN	protein_coding	PAICS	chromosome:C_jacchus3.2.1:3:1:190850796:1	137080069	137105110	R	Multifunctional protein ADE2 isoform 2 {ECO:0000313|EMBL:JAB08588.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033324}  [Source:UniProtKB/TrEMBL;Acc:F6U4J5]
ENSCJAG00000016192	KNOWN	protein_coding	PATL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	115161250	115193668	R	Protein PAT1 homolog 1 {ECO:0000313|EMBL:JAB26551.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029917}  [Source:UniProtKB/TrEMBL;Acc:F7IC02]
ENSCJAG00000013144	KNOWN	protein_coding	BECN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75271374	75283675	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024165}  [Source:UniProtKB/TrEMBL;Acc:F7HJB3]
ENSCJAG00000000794	KNOWN_BY_PROJECTION	protein_coding	LRPPRC	chromosome:C_jacchus3.2.1:14:1:108792865:1	64002538	64115876	D	leucine-rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
ENSCJAG00000006787	KNOWN	protein_coding	SNX4	chromosome:C_jacchus3.2.1:15:1:98464013:1	71357741	71421367	D	Sorting nexin-4 {ECO:0000313|EMBL:JAB22367.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012625}  [Source:UniProtKB/TrEMBL;Acc:F6QB88]
ENSCJAG00000022962	NOVEL	pseudogene	ENSCJAG00000022962	chromosome:C_jacchus3.2.1:12:1:121768101:1	82280376	82282752	D	<no descrition>
ENSCJAG00000034717	NOVEL	pseudogene	ENSCJAG00000034717	chromosome:C_jacchus3.2.1:15:1:98464013:1	71422578	71423311	R	<no descrition>
ENSCJAG00000004580	KNOWN_BY_PROJECTION	protein_coding	PRPH2	chromosome:C_jacchus3.2.1:4:1:171630274:1	43965228	43986569	R	peripherin 2 (retinal degeneration, slow) [Source:HGNC Symbol;Acc:HGNC:9942]
ENSCJAG00000004587	NOVEL	pseudogene	ENSCJAG00000004587	chromosome:C_jacchus3.2.1:4:1:171630274:1	44003258	44004211	R	<no descrition>
ENSCJAG00000020397	KNOWN_BY_PROJECTION	protein_coding	TRIM32	chromosome:C_jacchus3.2.1:1:1:210400635:1	160157471	160172446	D	tripartite motif containing 32 [Source:HGNC Symbol;Acc:HGNC:16380]
ENSCJAG00000016256	KNOWN_BY_PROJECTION	protein_coding	PPP1CC	chromosome:C_jacchus3.2.1:11:1:130397257:1	115205714	115207623	D	protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:HGNC:9283]
ENSCJAG00000022523	KNOWN_BY_PROJECTION	protein_coding	OR10V1	chromosome:C_jacchus3.2.1:11:1:130397257:1	115217440	115218573	R	olfactory receptor, family 10, subfamily V, member 1 [Source:HGNC Symbol;Acc:HGNC:15136]
ENSCJAG00000006741	KNOWN	protein_coding	ZNF148	chromosome:C_jacchus3.2.1:15:1:98464013:1	71501355	71659403	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012518}; Zinc finger protein 148 {ECO:0000313|EMBL:JAB16878.1}  [Source:UniProtKB/TrEMBL;Acc:F7H318]
ENSCJAG00000016258	NOVEL	protein_coding	ENSCJAG00000016258	chromosome:C_jacchus3.2.1:11:1:130397257:1	115231754	115233256	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020973}  [Source:UniProtKB/TrEMBL;Acc:F7GQF2]
ENSCJAG00000020384	KNOWN_BY_PROJECTION	protein_coding	TLR4	chromosome:C_jacchus3.2.1:1:1:210400635:1	161239104	161249716	D	toll-like receptor 4 [Source:HGNC Symbol;Acc:HGNC:11850]
ENSCJAG00000020382	NOVEL	pseudogene	ENSCJAG00000020382	chromosome:C_jacchus3.2.1:1:1:210400635:1	161641286	161641754	R	<no descrition>
ENSCJAG00000033184	NOVEL	pseudogene	ENSCJAG00000033184	chromosome:C_jacchus3.2.1:1:1:210400635:1	162281301	162282069	D	<no descrition>
ENSCJAG00000006687	KNOWN_BY_PROJECTION	protein_coding	SLC12A8	chromosome:C_jacchus3.2.1:15:1:98464013:1	71671982	71811286	D	solute carrier family 12, member 8 [Source:HGNC Symbol;Acc:HGNC:15595]
ENSCJAG00000000860	KNOWN	protein_coding	DYNC2LI1	chromosome:C_jacchus3.2.1:14:1:108792865:1	64038604	64220330	R	Cytoplasmic dynein 2 light intermediate chain 1 isoform 1 {ECO:0000313|EMBL:JAB05183.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045119}  [Source:UniProtKB/TrEMBL;Acc:F6SL64]
ENSCJAG00000020375	KNOWN	protein_coding	BRINP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	162742903	162946092	R	Deleted in bladder cancer protein 1 {ECO:0000313|EMBL:JAB13607.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037888}  [Source:UniProtKB/TrEMBL;Acc:F6YUW3]
ENSCJAG00000033278	NOVEL	protein_coding	ENSCJAG00000033278	chromosome:C_jacchus3.2.1:15:1:98464013:1	71866588	71876692	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012342}  [Source:UniProtKB/TrEMBL;Acc:F7HDW8]
ENSCJAG00000006666	KNOWN_BY_PROJECTION	protein_coding	HEG1	chromosome:C_jacchus3.2.1:15:1:98464013:1	71881629	71935404	D	heart development protein with EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:29227]
ENSCJAG00000006640	KNOWN_BY_PROJECTION	protein_coding	MUC13	chromosome:C_jacchus3.2.1:15:1:98464013:1	71967736	71997294	D	mucin 13, cell surface associated [Source:HGNC Symbol;Acc:HGNC:7511]
ENSCJAG00000016262	KNOWN_BY_PROJECTION	protein_coding	STX3	chromosome:C_jacchus3.2.1:11:1:130397257:1	115259314	115348085	D	syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]
ENSCJAG00000004594	KNOWN_BY_PROJECTION	protein_coding	GLTSCR1L	chromosome:C_jacchus3.2.1:4:1:171630274:1	44064817	44153534	D	GLTSCR1-like [Source:HGNC Symbol;Acc:HGNC:21111]
ENSCJAG00000017612	KNOWN_BY_PROJECTION	protein_coding	MTR	chromosome:C_jacchus3.2.1:19:1:49578535:1	43444264	43598648	R	5-methyltetrahydrofolate-homocysteine methyltransferase [Source:HGNC Symbol;Acc:HGNC:7468]
ENSCJAG00000006606	KNOWN	protein_coding	ITGB5	chromosome:C_jacchus3.2.1:15:1:98464013:1	72017751	72144936	D	Integrin beta {ECO:0000256|RuleBase:RU000633}  [Source:UniProtKB/TrEMBL;Acc:F7GMY8]
ENSCJAG00000020688	KNOWN_BY_PROJECTION	protein_coding	MGA	chromosome:C_jacchus3.2.1:10:1:132174527:1	34122180	34235704	R	MGA, MAX dimerization protein [Source:HGNC Symbol;Acc:HGNC:14010]
ENSCJAG00000006554	KNOWN	protein_coding	UMPS	chromosome:C_jacchus3.2.1:15:1:98464013:1	72184541	72259307	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012080}  [Source:UniProtKB/TrEMBL;Acc:F7GN90]
ENSCJAG00000006601	NOVEL	pseudogene	ENSCJAG00000006601	chromosome:C_jacchus3.2.1:15:1:98464013:1	72203459	72204260	D	<no descrition>
ENSCJAG00000000833	KNOWN_BY_PROJECTION	protein_coding	ABCG8	chromosome:C_jacchus3.2.1:14:1:108792865:1	64130202	64154242	R	ATP-binding cassette, sub-family G (WHITE), member 8 [Source:HGNC Symbol;Acc:HGNC:13887]
ENSCJAG00000006578	KNOWN_BY_PROJECTION	protein_coding	SKIL	chromosome:C_jacchus3.2.1:15:1:98464013:1	72217388	72246089	R	SKI-like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]
ENSCJAG00000004637	NOVEL	protein_coding	ENSCJAG00000004637	chromosome:C_jacchus3.2.1:4:1:171630274:1	44167559	44173182	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008399}  [Source:UniProtKB/TrEMBL;Acc:F7IPT9]
ENSCJAG00000004651	KNOWN_BY_PROJECTION	protein_coding	PTCRA	chromosome:C_jacchus3.2.1:4:1:171630274:1	44195780	44202006	D	pre T-cell antigen receptor alpha [Source:HGNC Symbol;Acc:HGNC:21290]
ENSCJAG00000006528	NOVEL	protein_coding	ENSCJAG00000006528	chromosome:C_jacchus3.2.1:15:1:98464013:1	72268138	72360200	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012063}  [Source:UniProtKB/TrEMBL;Acc:F7GTP1]
ENSCJAG00000000847	KNOWN_BY_PROJECTION	protein_coding	ABCG5	chromosome:C_jacchus3.2.1:14:1:108792865:1	64154389	64183078	D	ATP-binding cassette, sub-family G (WHITE), member 5 [Source:HGNC Symbol;Acc:HGNC:13886]
ENSCJAG00000013111	KNOWN	protein_coding	PSME3	chromosome:C_jacchus3.2.1:5:1:159171411:1	75292866	75299625	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050832}  [Source:UniProtKB/TrEMBL;Acc:F7G122]
ENSCJAG00000004662	KNOWN	protein_coding	CNPY3	chromosome:C_jacchus3.2.1:4:1:171630274:1	44206489	44219559	D	Protein canopy homolog 3 {ECO:0000313|EMBL:JAB02405.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008450}  [Source:UniProtKB/TrEMBL;Acc:F7ID04]
ENSCJAG00000013106	KNOWN_BY_PROJECTION	protein_coding	AOC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	75315275	75338276	D	amine oxidase, copper containing 3 [Source:HGNC Symbol;Acc:HGNC:550]
ENSCJAG00000013103	NOVEL	pseudogene	ENSCJAG00000013103	chromosome:C_jacchus3.2.1:5:1:159171411:1	75345242	75345793	D	<no descrition>
ENSCJAG00000033432	NOVEL	protein_coding	ENSCJAG00000033432	chromosome:C_jacchus3.2.1:5:1:159171411:1	75361422	75363781	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032539}  [Source:UniProtKB/TrEMBL;Acc:F7GQY7]
ENSCJAG00000013097	KNOWN_BY_PROJECTION	protein_coding	G6PC	chromosome:C_jacchus3.2.1:5:1:159171411:1	75366285	75377906	D	glucose-6-phosphatase, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:4056]
ENSCJAG00000015981	KNOWN_BY_PROJECTION	protein_coding	SORBS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	82345865	82604041	R	sorbin and SH3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14565]
ENSCJAG00000013086	KNOWN_BY_PROJECTION	protein_coding	PTGES3L-AARSD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75413691	75440348	R	PTGES3L-AARSD1 readthrough [Source:HGNC Symbol;Acc:HGNC:43946]
ENSCJAG00000014373	KNOWN_BY_PROJECTION	protein_coding	PLEKHH2	chromosome:C_jacchus3.2.1:14:1:108792865:1	64226493	64371410	R	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 [Source:HGNC Symbol;Acc:HGNC:30506]
ENSCJAG00000006440	NOVEL	protein_coding	ENSCJAG00000006440	chromosome:C_jacchus3.2.1:15:1:98464013:1	72434414	72945189	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012026}  [Source:UniProtKB/TrEMBL;Acc:F7H960]
ENSCJAG00000013082	KNOWN_BY_PROJECTION	protein_coding	RUNDC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75440908	75453586	D	RUN domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25418]
ENSCJAG00000013067	KNOWN_BY_PROJECTION	protein_coding	RPL27	chromosome:C_jacchus3.2.1:5:1:159171411:1	75475672	75479282	D	ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC:10328]
ENSCJAG00000013057	KNOWN_BY_PROJECTION	protein_coding	IFI35	chromosome:C_jacchus3.2.1:5:1:159171411:1	75483396	75493535	D	interferon-induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]
ENSCJAG00000034700	NOVEL	protein_coding	ENSCJAG00000034700	chromosome:C_jacchus3.2.1:10:1:132174527:1	34208846	34214073	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008047}  [Source:UniProtKB/TrEMBL;Acc:F6ZAB1]
ENSCJAG00000034353	NOVEL	pseudogene	ENSCJAG00000034353	chromosome:C_jacchus3.2.1:15:1:98464013:1	72732485	72733377	D	<no descrition>
ENSCJAG00000013035	KNOWN_BY_PROJECTION	protein_coding	VAT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75493685	75505244	R	vesicle amine transport 1 [Source:HGNC Symbol;Acc:HGNC:16919]
ENSCJAG00000015908	NOVEL	protein_coding	ENSCJAG00000015908	chromosome:C_jacchus3.2.1:15:1:98464013:1	73072715	73115505	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029285}  [Source:UniProtKB/TrEMBL;Acc:F7IP80]
ENSCJAG00000020700	KNOWN	protein_coding	TYRO3	chromosome:C_jacchus3.2.1:10:1:132174527:1	34328027	34349112	R	Tyrosine-protein kinase receptor TYRO3 {ECO:0000313|EMBL:JAB09600.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038514}  [Source:UniProtKB/TrEMBL;Acc:F7IGB6]
ENSCJAG00000020351	NOVEL	protein_coding	CDK5RAP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	163994705	164211901	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045032}  [Source:UniProtKB/TrEMBL;Acc:F6TUZ4]
ENSCJAG00000017702	KNOWN_BY_PROJECTION	protein_coding	ACTN2	chromosome:C_jacchus3.2.1:19:1:49578535:1	43611677	43946791	R	actinin, alpha 2 [Source:HGNC Symbol;Acc:HGNC:164]
ENSCJAG00000002141	KNOWN	protein_coding	SCYL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	90437525	90514996	D	SCY1-like protein 2 {ECO:0000313|EMBL:JAB05748.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003908}  [Source:UniProtKB/TrEMBL;Acc:F7EK97]
ENSCJAG00000013018	KNOWN	protein_coding	RND2	chromosome:C_jacchus3.2.1:5:1:159171411:1	75508159	75512045	D	Rho-related GTP-binding protein RhoN {ECO:0000313|EMBL:JAB12196.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023919}  [Source:UniProtKB/TrEMBL;Acc:F7GBH0]
ENSCJAG00000018047	KNOWN	protein_coding	PPAT	chromosome:C_jacchus3.2.1:3:1:190850796:1	137105180	137149490	D	Amidophosphoribosyltransferase {ECO:0000256|PIRNR:PIRNR000485}  [Source:UniProtKB/TrEMBL;Acc:F6SK93]
ENSCJAG00000018072	NOVEL	pseudogene	ENSCJAG00000018072	chromosome:C_jacchus3.2.1:3:1:190850796:1	137157356	137158321	R	<no descrition>
ENSCJAG00000012938	KNOWN_BY_PROJECTION	protein_coding	BRCA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75528895	75611363	R	breast cancer 1, early onset [Source:HGNC Symbol;Acc:HGNC:1100]
ENSCJAG00000019008	KNOWN_BY_PROJECTION	protein_coding	NANOGNB	chromosome:C_jacchus3.2.1:11:1:130397257:1	115305319	115316525	R	NANOG neighbor homeobox [Source:HGNC Symbol;Acc:HGNC:24958]
ENSCJAG00000016306	KNOWN	protein_coding	MRPL16	chromosome:C_jacchus3.2.1:11:1:130397257:1	115351563	115356283	R	39S ribosomal protein L16, mitochondrial {ECO:0000313|EMBL:JAB31722.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030003}  [Source:UniProtKB/TrEMBL;Acc:F6SEU8]
ENSCJAG00000018076	KNOWN	protein_coding	AASDH	chromosome:C_jacchus3.2.1:3:1:190850796:1	137158868	137202025	D	Acyl-CoA synthetase family member 4 {ECO:0000313|EMBL:JAB28617.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033475}  [Source:UniProtKB/TrEMBL;Acc:F6QFB5]
ENSCJAG00000016313	KNOWN_BY_PROJECTION	protein_coding	GIF	chromosome:C_jacchus3.2.1:11:1:130397257:1	115377429	115394657	R	gastric intrinsic factor (vitamin B synthesis) [Source:HGNC Symbol;Acc:HGNC:4268]
ENSCJAG00000014464	KNOWN_BY_PROJECTION	protein_coding	THADA	chromosome:C_jacchus3.2.1:14:1:108792865:1	64425055	64798423	D	thyroid adenoma associated [Source:HGNC Symbol;Acc:HGNC:19217]
ENSCJAG00000016320	KNOWN	protein_coding	TCN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	115399652	115416327	R	Transcobalamin-1 {ECO:0000313|EMBL:JAB02700.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030049}  [Source:UniProtKB/TrEMBL;Acc:F6RTZ3]
ENSCJAG00000016328	NOVEL	protein_coding	ENSCJAG00000016328	chromosome:C_jacchus3.2.1:11:1:130397257:1	115468881	115473827	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030055}  [Source:UniProtKB/TrEMBL;Acc:F6RTJ0]
ENSCJAG00000007474	KNOWN_BY_PROJECTION	protein_coding	MYLK	chromosome:C_jacchus3.2.1:15:1:98464013:1	73196492	73436725	D	myosin light chain kinase [Source:HGNC Symbol;Acc:HGNC:7590]
ENSCJAG00000016331	KNOWN_BY_PROJECTION	protein_coding	OOSP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	115537748	115545297	D	oocyte secreted protein 2 [Source:HGNC Symbol;Acc:HGNC:26699]
ENSCJAG00000016335	KNOWN_BY_PROJECTION	protein_coding	MS4A3	chromosome:C_jacchus3.2.1:11:1:130397257:1	115557262	115564740	D	membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) [Source:HGNC Symbol;Acc:HGNC:7317]
ENSCJAG00000016336	KNOWN_BY_PROJECTION	protein_coding	MS4A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	115572337	115580019	D	membrane-spanning 4-domains, subfamily A, member 2 [Source:HGNC Symbol;Acc:HGNC:7316]
ENSCJAG00000016355	KNOWN	protein_coding	MS4A6A	chromosome:C_jacchus3.2.1:11:1:130397257:1	115605700	115624185	R	Membrane-spanning 4-domains subfamily A member 6A isoform 1 {ECO:0000313|EMBL:JAB15323.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030110}  [Source:UniProtKB/TrEMBL;Acc:F6WCP4]
ENSCJAG00000002131	KNOWN_BY_PROJECTION	protein_coding	SLC17A8	chromosome:C_jacchus3.2.1:9:1:124281992:1	90534069	90595292	D	solute carrier family 17 (vesicular glutamate transporter), member 8 [Source:HGNC Symbol;Acc:HGNC:20151]
ENSCJAG00000017734	KNOWN	protein_coding	HEATR1	chromosome:C_jacchus3.2.1:19:1:49578535:1	43775046	43830937	D	HEAT repeat-containing protein 1 {ECO:0000313|EMBL:JAB07670.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032897}  [Source:UniProtKB/TrEMBL;Acc:F7HGG5]
ENSCJAG00000016376	NOVEL	protein_coding	ENSCJAG00000016376	chromosome:C_jacchus3.2.1:11:1:130397257:1	115682556	115707795	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030142}  [Source:UniProtKB/TrEMBL;Acc:F6VT74]
ENSCJAG00000016388	NOVEL	protein_coding	ENSCJAG00000016388	chromosome:C_jacchus3.2.1:11:1:130397257:1	115712871	115714106	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030145}  [Source:UniProtKB/TrEMBL;Acc:F6VT43]
ENSCJAG00000016390	NOVEL	protein_coding	ENSCJAG00000016390	chromosome:C_jacchus3.2.1:11:1:130397257:1	115746466	115748411	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030151}  [Source:UniProtKB/TrEMBL;Acc:F6VSP6]
ENSCJAG00000016395	KNOWN	protein_coding	MS4A7	chromosome:C_jacchus3.2.1:11:1:130397257:1	115764960	115783862	D	Membrane-spanning 4-domains subfamily A member 7 isoform 1 {ECO:0000313|EMBL:JAB23786.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030169}  [Source:UniProtKB/TrEMBL;Acc:F6V8V9]
ENSCJAG00000002087	KNOWN_BY_PROJECTION	protein_coding	NR1H4	chromosome:C_jacchus3.2.1:9:1:124281992:1	90648367	90735854	D	nuclear receptor subfamily 1, group H, member 4 [Source:HGNC Symbol;Acc:HGNC:7967]
ENSCJAG00000016401	KNOWN_BY_PROJECTION	protein_coding	MS4A14	chromosome:C_jacchus3.2.1:11:1:130397257:1	115784501	115805307	D	membrane-spanning 4-domains, subfamily A, member 14 [Source:HGNC Symbol;Acc:HGNC:30706]
ENSCJAG00000016411	KNOWN_BY_PROJECTION	protein_coding	MS4A5	chromosome:C_jacchus3.2.1:11:1:130397257:1	115815378	115825988	D	membrane-spanning 4-domains, subfamily A, member 5 [Source:HGNC Symbol;Acc:HGNC:13374]
ENSCJAG00000016417	KNOWN	protein_coding	MS4A1	chromosome:C_jacchus3.2.1:11:1:130397257:1	115833134	115848948	D	Callithrix jacchus membrane-spanning 4-domains, subfamily A, member 1 (MS4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001257245]
ENSCJAG00000002065	KNOWN_BY_PROJECTION	protein_coding	GAS2L3	chromosome:C_jacchus3.2.1:9:1:124281992:1	90747182	90800322	D	growth arrest-specific 2 like 3 [Source:HGNC Symbol;Acc:HGNC:27475]
ENSCJAG00000012878	KNOWN_BY_PROJECTION	protein_coding	NBR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	75616876	75647107	D	neighbor of BRCA1 gene 1 [Source:HGNC Symbol;Acc:HGNC:6746]
ENSCJAG00000037098	KNOWN_BY_PROJECTION	protein_coding	MS4A12	chromosome:C_jacchus3.2.1:11:1:130397257:1	115879892	115889499	D	membrane-spanning 4-domains, subfamily A, member 12 [Source:HGNC Symbol;Acc:HGNC:13370]
ENSCJAG00000016444	KNOWN_BY_PROJECTION	protein_coding	MS4A13	chromosome:C_jacchus3.2.1:11:1:130397257:1	115897510	115919978	D	membrane-spanning 4-domains, subfamily A, member 13 [Source:HGNC Symbol;Acc:HGNC:16674]
ENSCJAG00000016432	KNOWN_BY_PROJECTION	protein_coding	MS4A8	chromosome:C_jacchus3.2.1:11:1:130397257:1	116004073	116026500	D	membrane-spanning 4-domains, subfamily A, member 8 [Source:HGNC Symbol;Acc:HGNC:13380]
ENSCJAG00000018115	KNOWN_BY_PROJECTION	protein_coding	KIAA1211	chromosome:C_jacchus3.2.1:3:1:190850796:1	137203285	137374358	R	KIAA1211 [Source:HGNC Symbol;Acc:HGNC:29219]
ENSCJAG00000012857	KNOWN	protein_coding	TMEM106A	chromosome:C_jacchus3.2.1:5:1:159171411:1	75648443	75657349	D	Transmembrane protein 106A {ECO:0000313|EMBL:JAB05807.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023570}  [Source:UniProtKB/TrEMBL;Acc:F7I1J6]
ENSCJAG00000016451	NOVEL	protein_coding	ENSCJAG00000016451	chromosome:C_jacchus3.2.1:11:1:130397257:1	116053126	116055346	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030275}  [Source:UniProtKB/TrEMBL;Acc:F7AR75]
ENSCJAG00000035729	NOVEL	protein_coding	ENSCJAG00000035729	chromosome:C_jacchus3.2.1:15:1:98464013:1	73435000	73436725	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052293}  [Source:UniProtKB/TrEMBL;Acc:F7IGS9]
ENSCJAG00000016453	KNOWN_BY_PROJECTION	protein_coding	MS4A15	chromosome:C_jacchus3.2.1:11:1:130397257:1	116071912	116085911	D	membrane-spanning 4-domains, subfamily A, member 15 [Source:HGNC Symbol;Acc:HGNC:28573]
ENSCJAG00000007614	NOVEL	pseudogene	ENSCJAG00000007614	chromosome:C_jacchus3.2.1:15:1:98464013:1	73490664	73491142	R	<no descrition>
ENSCJAG00000007607	NOVEL	protein_coding	ENSCJAG00000007607	chromosome:C_jacchus3.2.1:15:1:98464013:1	73536807	73546487	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014109}  [Source:UniProtKB/TrEMBL;Acc:F7IJ13]
ENSCJAG00000010785	KNOWN_BY_PROJECTION	protein_coding	ARL4D	chromosome:C_jacchus3.2.1:5:1:159171411:1	75757965	75759935	D	ADP-ribosylation factor-like 4D [Source:HGNC Symbol;Acc:HGNC:656]
ENSCJAG00000016478	KNOWN_BY_PROJECTION	protein_coding	MS4A10	chromosome:C_jacchus3.2.1:11:1:130397257:1	116100281	116111759	D	membrane-spanning 4-domains, subfamily A, member 10 [Source:HGNC Symbol;Acc:HGNC:13368]
ENSCJAG00000016483	KNOWN	protein_coding	CCDC86	chromosome:C_jacchus3.2.1:11:1:130397257:1	116143512	116153272	D	Coiled-coil domain-containing protein 86 {ECO:0000313|EMBL:JAB03828.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030349}  [Source:UniProtKB/TrEMBL;Acc:F6WVK6]
ENSCJAG00000004675	KNOWN	protein_coding	GNMT	chromosome:C_jacchus3.2.1:4:1:171630274:1	44233365	44236537	D	Glycine N-methyltransferase {ECO:0000256|PIRNR:PIRNR000385}  [Source:UniProtKB/TrEMBL;Acc:F7I607]
ENSCJAG00000016500	NOVEL	pseudogene	ENSCJAG00000016500	chromosome:C_jacchus3.2.1:11:1:130397257:1	116155833	116156407	R	<no descrition>
ENSCJAG00000016509	KNOWN	protein_coding	PRPF19	chromosome:C_jacchus3.2.1:11:1:130397257:1	116197616	116213998	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030447}  [Source:UniProtKB/TrEMBL;Acc:F7B8M4]
ENSCJAG00000007619	KNOWN_BY_PROJECTION	protein_coding	ADCY5	chromosome:C_jacchus3.2.1:15:1:98464013:1	73588874	73756122	D	adenylate cyclase 5 [Source:HGNC Symbol;Acc:HGNC:236]
ENSCJAG00000016556	KNOWN	protein_coding	TMEM109	chromosome:C_jacchus3.2.1:11:1:130397257:1	116221138	116242537	D	Transmembrane protein 109 {ECO:0000313|EMBL:JAB07436.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049953}  [Source:UniProtKB/TrEMBL;Acc:F7CA15]
ENSCJAG00000004684	KNOWN_BY_PROJECTION	protein_coding	PEX6	chromosome:C_jacchus3.2.1:4:1:171630274:1	44236749	44252182	R	peroxisomal biogenesis factor 6 [Source:HGNC Symbol;Acc:HGNC:8859]
ENSCJAG00000010659	KNOWN_BY_PROJECTION	protein_coding	DHX8	chromosome:C_jacchus3.2.1:5:1:159171411:1	75840705	75881636	D	DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Source:HGNC Symbol;Acc:HGNC:2749]
ENSCJAG00000016603	KNOWN_BY_PROJECTION	protein_coding	TMEM132A	chromosome:C_jacchus3.2.1:11:1:130397257:1	116243435	116256720	D	transmembrane protein 132A [Source:HGNC Symbol;Acc:HGNC:31092]
ENSCJAG00000007704	KNOWN	protein_coding	SEC22A	chromosome:C_jacchus3.2.1:15:1:98464013:1	73770686	73832990	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014276}; Vesicle-trafficking protein SEC22a {ECO:0000313|EMBL:JAB07322.1}  [Source:UniProtKB/TrEMBL;Acc:F7ITB6]
ENSCJAG00000001995	KNOWN	protein_coding	ANO4	chromosome:C_jacchus3.2.1:9:1:124281992:1	90869000	91302323	D	Anoctamin {ECO:0000256|RuleBase:RU280814}  [Source:UniProtKB/TrEMBL;Acc:F7DQF3]
ENSCJAG00000007712	KNOWN_BY_PROJECTION	protein_coding	PDIA5	chromosome:C_jacchus3.2.1:15:1:98464013:1	73888377	73984842	R	protein disulfide isomerase family A, member 5 [Source:HGNC Symbol;Acc:HGNC:24811]
ENSCJAG00000016626	KNOWN_BY_PROJECTION	protein_coding	SLC15A3	chromosome:C_jacchus3.2.1:11:1:130397257:1	116256639	116273216	R	solute carrier family 15 (oligopeptide transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:18068]
ENSCJAG00000020713	KNOWN	protein_coding	RPAP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	34361964	34390649	D	RNA polymerase II-associated protein 1 {ECO:0000313|EMBL:JAB10859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038537}  [Source:UniProtKB/TrEMBL;Acc:F7IBN4]
ENSCJAG00000020344	KNOWN_BY_PROJECTION	protein_coding	MEGF9	chromosome:C_jacchus3.2.1:1:1:210400635:1	164240835	164363185	R	multiple EGF-like-domains 9 [Source:HGNC Symbol;Acc:HGNC:3234]
ENSCJAG00000036362	NOVEL	protein_coding	ENSCJAG00000036362	chromosome:C_jacchus3.2.1:3:1:190850796:1	137278440	137280742	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052489}  [Source:UniProtKB/TrEMBL;Acc:F7I016]
ENSCJAG00000016123	NOVEL	pseudogene	ENSCJAG00000016123	chromosome:C_jacchus3.2.1:12:1:121768101:1	82389895	82391488	R	<no descrition>
ENSCJAG00000031835	NOVEL	protein_coding	ENSCJAG00000031835	chromosome:C_jacchus3.2.1:3:1:190850796:1	137287875	137297418	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029480}  [Source:UniProtKB/TrEMBL;Acc:F7IP61]
ENSCJAG00000022963	NOVEL	pseudogene	ENSCJAG00000022963	chromosome:C_jacchus3.2.1:12:1:121768101:1	82640549	82641185	R	<no descrition>
ENSCJAG00000016561	KNOWN_BY_PROJECTION	protein_coding	CD6	chromosome:C_jacchus3.2.1:11:1:130397257:1	116338268	116352105	D	CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
ENSCJAG00000016127	NOVEL	pseudogene	ENSCJAG00000016127	chromosome:C_jacchus3.2.1:12:1:121768101:1	82643926	82644635	R	<no descrition>
ENSCJAG00000017839	KNOWN_BY_PROJECTION	protein_coding	LGALS8	chromosome:C_jacchus3.2.1:19:1:49578535:1	43833337	43857602	R	lectin, galactoside-binding, soluble, 8 [Source:HGNC Symbol;Acc:HGNC:6569]
ENSCJAG00000007825	KNOWN_BY_PROJECTION	protein_coding	SEMA5B	chromosome:C_jacchus3.2.1:15:1:98464013:1	74026055	74151870	D	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:HGNC Symbol;Acc:HGNC:10737]
ENSCJAG00000020331	KNOWN	protein_coding	FBXW2	chromosome:C_jacchus3.2.1:1:1:210400635:1	164406686	164432318	R	F-box/WD repeat-containing protein 2 {ECO:0000313|EMBL:JAB06888.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037805}  [Source:UniProtKB/TrEMBL;Acc:F7BE28]
ENSCJAG00000004782	KNOWN	protein_coding	PPP2R5D	chromosome:C_jacchus3.2.1:4:1:171630274:1	44260641	44330925	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008880}  [Source:UniProtKB/TrEMBL;Acc:F7IF77]
ENSCJAG00000035032	NOVEL	protein_coding	ENSCJAG00000035032	chromosome:C_jacchus3.2.1:19:1:49578535:1	44002095	44002990	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044157}  [Source:UniProtKB/TrEMBL;Acc:F7FYK5]
ENSCJAG00000017364	KNOWN_BY_PROJECTION	protein_coding	CD5	chromosome:C_jacchus3.2.1:11:1:130397257:1	116427089	116451685	D	CD5 molecule [Source:HGNC Symbol;Acc:HGNC:1685]
ENSCJAG00000019419	KNOWN_BY_PROJECTION	protein_coding	VPS37C	chromosome:C_jacchus3.2.1:11:1:130397257:1	116456409	116465526	R	vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26097]
ENSCJAG00000007855	KNOWN	protein_coding	DIRC2	chromosome:C_jacchus3.2.1:15:1:98464013:1	74179046	74269297	R	Disrupted in renal carcinoma protein 2 {ECO:0000313|EMBL:JAB05132.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014590}  [Source:UniProtKB/TrEMBL;Acc:F7IBJ8]
ENSCJAG00000019301	KNOWN	protein_coding	TMEM138	chromosome:C_jacchus3.2.1:11:1:130397257:1	116496621	116685981	D	Transmembrane protein 138 {ECO:0000313|EMBL:JAB06500.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035825}  [Source:UniProtKB/TrEMBL;Acc:F7HCV4]
ENSCJAG00000020329	NOVEL	protein_coding	ENSCJAG00000020329	chromosome:C_jacchus3.2.1:1:1:210400635:1	164437599	164439306	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037785}  [Source:UniProtKB/TrEMBL;Acc:F7CRR6]
ENSCJAG00000017881	KNOWN	protein_coding	ERO1LB	chromosome:C_jacchus3.2.1:19:1:49578535:1	44011141	44079023	D	ERO1-like protein beta {ECO:0000313|EMBL:JAB08168.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033027}  [Source:UniProtKB/TrEMBL;Acc:F6PL51]
ENSCJAG00000016133	KNOWN	protein_coding	ALDH18A1	chromosome:C_jacchus3.2.1:12:1:121768101:1	82655992	82696437	R	Delta-1-pyrroline-5-carboxylate synthase isoform 1 {ECO:0000313|EMBL:JAB02773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029835}  [Source:UniProtKB/TrEMBL;Acc:F7HKL6]
ENSCJAG00000020315	KNOWN	protein_coding	PSMD5	chromosome:C_jacchus3.2.1:1:1:210400635:1	164450185	164474816	R	26S proteasome non-ATPase regulatory subunit 5 isoform 1 {ECO:0000313|EMBL:JAB01866.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037783}  [Source:UniProtKB/TrEMBL;Acc:F7CRT8]
ENSCJAG00000007911	KNOWN	protein_coding	HSPBAP1	chromosome:C_jacchus3.2.1:15:1:98464013:1	74270550	74329732	D	HSPB1-associated protein 1 {ECO:0000313|EMBL:JAB05005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014657}  [Source:UniProtKB/TrEMBL;Acc:F7HZS4]
ENSCJAG00000007930	KNOWN_BY_PROJECTION	protein_coding	PARP14	chromosome:C_jacchus3.2.1:15:1:98464013:1	74336303	74395392	R	poly (ADP-ribose) polymerase family, member 14 [Source:HGNC Symbol;Acc:HGNC:29232]
ENSCJAG00000031648	KNOWN_BY_PROJECTION	protein_coding	PDE8A	chromosome:C_jacchus3.2.1:15:1:98464013:1	74342334	74344100	D	phosphodiesterase 8A [Source:HGNC Symbol;Acc:HGNC:8793]
ENSCJAG00000019394	KNOWN	protein_coding	PGA	chromosome:C_jacchus3.2.1:11:1:130397257:1	116538835	116551323	D	Callithrix jacchus pepsin A-like (PGA), mRNA. [Source:RefSeq mRNA;Acc:NM_001267767]
ENSCJAG00000007967	KNOWN_BY_PROJECTION	protein_coding	PARP15	chromosome:C_jacchus3.2.1:15:1:98464013:1	74413067	74455595	R	poly (ADP-ribose) polymerase family, member 15 [Source:HGNC Symbol;Acc:HGNC:26876]
ENSCJAG00000010626	KNOWN	protein_coding	ETV4	chromosome:C_jacchus3.2.1:5:1:159171411:1	75882917	75902106	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019621}  [Source:UniProtKB/TrEMBL;Acc:F6TZY0]
ENSCJAG00000020723	KNOWN_BY_PROJECTION	protein_coding	LTK	chromosome:C_jacchus3.2.1:10:1:132174527:1	34394667	34404176	D	leukocyte receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:6721]
ENSCJAG00000032212	NOVEL	pseudogene	ENSCJAG00000032212	chromosome:C_jacchus3.2.1:3:1:190850796:1	137294780	137295047	D	<no descrition>
ENSCJAG00000018119	KNOWN_BY_PROJECTION	protein_coding	CEP135	chromosome:C_jacchus3.2.1:3:1:190850796:1	137528973	137611944	R	centrosomal protein 135kDa [Source:HGNC Symbol;Acc:HGNC:29086]
ENSCJAG00000007986	KNOWN	protein_coding	DTX3L	chromosome:C_jacchus3.2.1:15:1:98464013:1	74461016	74469101	R	E3 ubiquitin-protein ligase DTX3L {ECO:0000313|EMBL:JAB04656.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014765}  [Source:UniProtKB/TrEMBL;Acc:F7IIM9]
ENSCJAG00000017900	KNOWN	protein_coding	GPR137B	chromosome:C_jacchus3.2.1:19:1:49578535:1	44084886	44152739	R	Integral membrane protein GPR137B {ECO:0000313|EMBL:JAB05683.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033072}  [Source:UniProtKB/TrEMBL;Acc:F6TJ23]
ENSCJAG00000008000	KNOWN_BY_PROJECTION	protein_coding	PARP9	chromosome:C_jacchus3.2.1:15:1:98464013:1	74468709	74507395	D	poly (ADP-ribose) polymerase family, member 9 [Source:HGNC Symbol;Acc:HGNC:24118]
ENSCJAG00000010614	KNOWN_BY_PROJECTION	protein_coding	MEOX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	76003102	76025473	R	mesenchyme homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7013]
ENSCJAG00000014571	KNOWN_BY_PROJECTION	protein_coding	ZFP36L2	chromosome:C_jacchus3.2.1:14:1:108792865:1	64802245	64807474	D	ZFP36 ring finger protein-like 2 [Source:HGNC Symbol;Acc:HGNC:1108]
ENSCJAG00000017921	KNOWN_BY_PROJECTION	protein_coding	NID1	chromosome:C_jacchus3.2.1:19:1:49578535:1	44246106	44335375	D	nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
ENSCJAG00000014593	KNOWN_BY_PROJECTION	protein_coding	HAAO	chromosome:C_jacchus3.2.1:14:1:108792865:1	65235722	65259480	D	3-hydroxyanthranilate 3,4-dioxygenase [Source:HGNC Symbol;Acc:HGNC:4796]
ENSCJAG00000018175	KNOWN	protein_coding	EXOC1	chromosome:C_jacchus3.2.1:3:1:190850796:1	137660775	137714066	R	Exocyst complex component 1 isoform 2 {ECO:0000313|EMBL:JAB29761.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033744}  [Source:UniProtKB/TrEMBL;Acc:F6TDJ1]
ENSCJAG00000004888	KNOWN_BY_PROJECTION	protein_coding	SLC17A5	chromosome:C_jacchus3.2.1:4:1:171630274:1	44267784	44284351	R	solute carrier family 17 (acidic sugar transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:10933]
ENSCJAG00000014607	NOVEL	pseudogene	ENSCJAG00000014607	chromosome:C_jacchus3.2.1:14:1:108792865:1	65262459	65264190	D	<no descrition>
ENSCJAG00000004894	KNOWN_BY_PROJECTION	protein_coding	MEA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	44330814	44332404	R	male-enhanced antigen 1 [Source:HGNC Symbol;Acc:HGNC:6986]
ENSCJAG00000010593	KNOWN_BY_PROJECTION	protein_coding	DUSP3	chromosome:C_jacchus3.2.1:5:1:159171411:1	76127064	76155062	R	dual specificity phosphatase 3 [Source:HGNC Symbol;Acc:HGNC:3069]
ENSCJAG00000020305	KNOWN	protein_coding	PHF19	chromosome:C_jacchus3.2.1:1:1:210400635:1	164486959	164509555	R	PHD finger protein 19 isoform a {ECO:0000313|EMBL:JAB03992.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049631}  [Source:UniProtKB/TrEMBL;Acc:F6ZWU4]
ENSCJAG00000010586	KNOWN_BY_PROJECTION	protein_coding	C17orf105	chromosome:C_jacchus3.2.1:5:1:159171411:1	76156481	76161671	D	chromosome 17 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:37241]
ENSCJAG00000008033	KNOWN	protein_coding	KPNA1	chromosome:C_jacchus3.2.1:15:1:98464013:1	74541144	74607381	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014962}  [Source:UniProtKB/TrEMBL;Acc:F7ISW6]
ENSCJAG00000014614	KNOWN_BY_PROJECTION	protein_coding	MTA3	chromosome:C_jacchus3.2.1:14:1:108792865:1	65273158	65470657	R	metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
ENSCJAG00000001983	KNOWN	protein_coding	SLC5A8	chromosome:C_jacchus3.2.1:9:1:124281992:1	91314318	91370566	R	Sodium-coupled monocarboxylate transporter 1 {ECO:0000313|EMBL:JAB02881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003590}  [Source:UniProtKB/TrEMBL;Acc:F7DTW9]
ENSCJAG00000020298	KNOWN	protein_coding	TRAF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	164541471	164566086	R	TNF receptor-associated factor 1 isoform a {ECO:0000313|EMBL:JAB02799.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037736}  [Source:UniProtKB/TrEMBL;Acc:F6VDY9]
ENSCJAG00000018237	KNOWN	protein_coding	NMU	chromosome:C_jacchus3.2.1:3:1:190850796:1	137928336	137959298	D	neuromedin-U-like  [Source:RefSeq peptide;Acc:NP_001254673]
ENSCJAG00000020743	KNOWN_BY_PROJECTION	protein_coding	ITPKA	chromosome:C_jacchus3.2.1:10:1:132174527:1	34404267	34414777	R	inositol-trisphosphate 3-kinase A [Source:HGNC Symbol;Acc:HGNC:6178]
ENSCJAG00000004911	KNOWN_BY_PROJECTION	protein_coding	KLHDC3	chromosome:C_jacchus3.2.1:4:1:171630274:1	44336390	44340732	D	kelch domain containing 3 [Source:HGNC Symbol;Acc:HGNC:20704]
ENSCJAG00000017931	KNOWN_BY_PROJECTION	protein_coding	LYST	chromosome:C_jacchus3.2.1:19:1:49578535:1	44405016	44645376	D	lysosomal trafficking regulator [Source:HGNC Symbol;Acc:HGNC:1968]
ENSCJAG00000019384	KNOWN_BY_PROJECTION	protein_coding	VWCE	chromosome:C_jacchus3.2.1:11:1:130397257:1	116560713	116607972	R	von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
ENSCJAG00000008116	KNOWN	protein_coding	FAM162A	chromosome:C_jacchus3.2.1:15:1:98464013:1	74619449	74634184	R	Protein FAM162A {ECO:0000313|EMBL:JAB01609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014998}  [Source:UniProtKB/TrEMBL;Acc:F7IN57]
ENSCJAG00000001913	KNOWN_BY_PROJECTION	protein_coding	UTP20	chromosome:C_jacchus3.2.1:9:1:124281992:1	91432054	91543676	D	UTP20, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:17897]
ENSCJAG00000020746	KNOWN_BY_PROJECTION	protein_coding	RTF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	34425288	34498135	R	Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28996]
ENSCJAG00000008132	NOVEL	protein_coding	ENSCJAG00000008132	chromosome:C_jacchus3.2.1:15:1:98464013:1	74635722	74659399	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015005}  [Source:UniProtKB/TrEMBL;Acc:F7GIH3]
ENSCJAG00000008141	KNOWN	protein_coding	CSTA	chromosome:C_jacchus3.2.1:15:1:98464013:1	74675735	74689614	R	Cystatin-A {ECO:0000313|EMBL:JAB03644.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015013}  [Source:UniProtKB/TrEMBL;Acc:F7GIC1]
ENSCJAG00000008145	KNOWN_BY_PROJECTION	protein_coding	CASR	chromosome:C_jacchus3.2.1:15:1:98464013:1	74730885	74820614	R	calcium-sensing receptor [Source:HGNC Symbol;Acc:HGNC:1514]
ENSCJAG00000011711	NOVEL	pseudogene	ENSCJAG00000011711	chromosome:C_jacchus3.2.1:14:1:108792865:1	65395714	65395901	R	<no descrition>
ENSCJAG00000018720	NOVEL	protein_coding	ENSCJAG00000018720	chromosome:C_jacchus3.2.1:14:1:108792865:1	65411585	65412945	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034783}  [Source:UniProtKB/TrEMBL;Acc:F7I3K6]
ENSCJAG00000014681	NOVEL	protein_coding	ENSCJAG00000014681	chromosome:C_jacchus3.2.1:14:1:108792865:1	65433930	65435366	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7FUE7]
ENSCJAG00000014695	KNOWN_BY_PROJECTION	protein_coding	KCNG3	chromosome:C_jacchus3.2.1:14:1:108792865:1	65554313	65612460	D	potassium channel, voltage gated modifier subfamily G, member 3 [Source:HGNC Symbol;Acc:HGNC:18306]
ENSCJAG00000014703	NOVEL	pseudogene	ENSCJAG00000014703	chromosome:C_jacchus3.2.1:14:1:108792865:1	65648387	65649459	D	<no descrition>
ENSCJAG00000014705	KNOWN_BY_PROJECTION	protein_coding	COX7A2L	chromosome:C_jacchus3.2.1:14:1:108792865:1	65686391	65697782	D	cytochrome c oxidase subunit VIIa polypeptide 2 like [Source:HGNC Symbol;Acc:HGNC:2289]
ENSCJAG00000008181	KNOWN	protein_coding	CD86	chromosome:C_jacchus3.2.1:15:1:98464013:1	74859815	74928751	R	Callithrix jacchus CD86 molecule (CD86), mRNA. [Source:RefSeq mRNA;Acc:NM_001257222]
ENSCJAG00000020273	KNOWN_BY_PROJECTION	protein_coding	C5	chromosome:C_jacchus3.2.1:1:1:210400635:1	164590571	164715364	R	complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
ENSCJAG00000010482	KNOWN	protein_coding	MPP3	chromosome:C_jacchus3.2.1:5:1:159171411:1	76175763	76208727	R	MAGUK p55 subfamily member 3 {ECO:0000313|EMBL:JAB46632.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019496}  [Source:UniProtKB/TrEMBL;Acc:F6SGV1]
ENSCJAG00000008227	KNOWN_BY_PROJECTION	protein_coding	ILDR1	chromosome:C_jacchus3.2.1:15:1:98464013:1	74942869	74975676	D	immunoglobulin-like domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:28741]
ENSCJAG00000016206	KNOWN_BY_PROJECTION	protein_coding	TCTN3	chromosome:C_jacchus3.2.1:12:1:121768101:1	82703771	82730848	R	tectonic family member 3 [Source:HGNC Symbol;Acc:HGNC:24519]
ENSCJAG00000018258	KNOWN_BY_PROJECTION	protein_coding	PDCL2	chromosome:C_jacchus3.2.1:3:1:190850796:1	137962187	138017200	D	phosducin-like 2 [Source:HGNC Symbol;Acc:HGNC:29524]
ENSCJAG00000010468	KNOWN_BY_PROJECTION	protein_coding	CD300LG	chromosome:C_jacchus3.2.1:5:1:159171411:1	76222252	76238295	D	CD300 molecule-like family member g [Source:HGNC Symbol;Acc:HGNC:30455]
ENSCJAG00000014719	KNOWN	protein_coding	EML4	chromosome:C_jacchus3.2.1:14:1:108792865:1	65724359	65926179	R	Echinoderm microtubule-associated protein-like 4 isoform b {ECO:0000313|EMBL:JAB51043.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027291}  [Source:UniProtKB/TrEMBL;Acc:F7F1T3]
ENSCJAG00000018261	KNOWN	protein_coding	CLOCK	chromosome:C_jacchus3.2.1:3:1:190850796:1	138025638	138136697	D	Circadian locomoter output cycles protein kaput {ECO:0000313|EMBL:JAB15792.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033939}  [Source:UniProtKB/TrEMBL;Acc:F6TMY8]
ENSCJAG00000008258	KNOWN_BY_PROJECTION	protein_coding	SLC15A2	chromosome:C_jacchus3.2.1:15:1:98464013:1	75003066	75045161	R	solute carrier family 15 (oligopeptide transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10921]
ENSCJAG00000004943	KNOWN_BY_PROJECTION	protein_coding	RRP36	chromosome:C_jacchus3.2.1:4:1:171630274:1	44341298	44460415	D	ribosomal RNA processing 36 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:21374]
ENSCJAG00000004960	KNOWN_BY_PROJECTION	protein_coding	CUL7	chromosome:C_jacchus3.2.1:4:1:171630274:1	44352835	44366954	R	cullin 7 [Source:HGNC Symbol;Acc:HGNC:21024]
ENSCJAG00000010393	KNOWN	protein_coding	MPP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	76253036	76277397	R	MAGUK p55 subfamily member 2 {ECO:0000313|EMBL:JAB15108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046550}  [Source:UniProtKB/TrEMBL;Acc:F7I3R4]
ENSCJAG00000020751	KNOWN	protein_coding	NDUFAF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	34510613	34526560	D	Complex I intermediate-associated protein 30, mitochondrial {ECO:0000313|EMBL:JAB09693.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038602}  [Source:UniProtKB/TrEMBL;Acc:F7HZT7]
ENSCJAG00000008358	KNOWN	protein_coding	EAF2	chromosome:C_jacchus3.2.1:15:1:98464013:1	75054608	75097778	R	ELL-associated factor 2 {ECO:0000313|EMBL:JAB02623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015401}  [Source:UniProtKB/TrEMBL;Acc:F7GZW9]
ENSCJAG00000020755	KNOWN_BY_PROJECTION	protein_coding	NUSAP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	34530213	34574377	R	nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]
ENSCJAG00000016232	KNOWN	protein_coding	ENTPD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	82789862	82904905	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043740}  [Source:UniProtKB/TrEMBL;Acc:F7HLA6]
ENSCJAG00000018015	KNOWN	protein_coding	GNG4	chromosome:C_jacchus3.2.1:19:1:49578535:1	44657792	44740293	D	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F6QSV4]
ENSCJAG00000018018	KNOWN_BY_PROJECTION	protein_coding	B3GALNT2	chromosome:C_jacchus3.2.1:19:1:49578535:1	44778283	44834185	D	beta-1,3-N-acetylgalactosaminyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:28596]
ENSCJAG00000019319	KNOWN	protein_coding	DDB1	chromosome:C_jacchus3.2.1:11:1:130397257:1	116613803	116657791	R	DNA damage-binding protein 1 {ECO:0000313|EMBL:JAB11607.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047249}  [Source:UniProtKB/TrEMBL;Acc:F7IFZ2]
ENSCJAG00000008369	KNOWN	protein_coding	IQCB1	chromosome:C_jacchus3.2.1:15:1:98464013:1	75097882	75191468	D	IQ calmodulin-binding motif-containing protein 1 isoform a {ECO:0000313|EMBL:JAB07487.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015456}  [Source:UniProtKB/TrEMBL;Acc:F7GPE5]
ENSCJAG00000014835	KNOWN_BY_PROJECTION	protein_coding	PKDCC	chromosome:C_jacchus3.2.1:14:1:108792865:1	66039285	66050041	R	protein kinase domain containing, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:25123]
ENSCJAG00000018023	KNOWN_BY_PROJECTION	protein_coding	TBCE	chromosome:C_jacchus3.2.1:19:1:49578535:1	44835222	44905873	R	tubulin folding cofactor E [Source:HGNC Symbol;Acc:HGNC:11582]
ENSCJAG00000016251	NOVEL	protein_coding	ENSCJAG00000016251	chromosome:C_jacchus3.2.1:12:1:121768101:1	82932550	83050655	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029911}  [Source:UniProtKB/TrEMBL;Acc:F7IC06]
ENSCJAG00000018045	KNOWN	protein_coding	GGPS1	chromosome:C_jacchus3.2.1:19:1:49578535:1	44921334	44934868	R	Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:JAB10566.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047932}  [Source:UniProtKB/TrEMBL;Acc:F7EFP1]
ENSCJAG00000008408	KNOWN_BY_PROJECTION	protein_coding	GOLGB1	chromosome:C_jacchus3.2.1:15:1:98464013:1	75282311	75371137	D	golgin B1 [Source:HGNC Symbol;Acc:HGNC:4429]
ENSCJAG00000018339	KNOWN_BY_PROJECTION	protein_coding	TMEM165	chromosome:C_jacchus3.2.1:3:1:190850796:1	138142345	138175191	R	transmembrane protein 165 [Source:HGNC Symbol;Acc:HGNC:30760]
ENSCJAG00000001966	KNOWN	protein_coding	ARL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	91546441	91564462	R	ADP-ribosylation factor-like protein 1 {ECO:0000313|EMBL:JAB06323.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051885}  [Source:UniProtKB/TrEMBL;Acc:F6VEE2]
ENSCJAG00000008451	KNOWN	protein_coding	HCLS1	chromosome:C_jacchus3.2.1:15:1:98464013:1	75373108	75401827	D	Hematopoietic lineage cell-specific protein {ECO:0000313|EMBL:JAB30524.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015637}  [Source:UniProtKB/TrEMBL;Acc:F7H4I3]
ENSCJAG00000016259	KNOWN	protein_coding	CCNJ	chromosome:C_jacchus3.2.1:12:1:121768101:1	83065872	83086264	D	Cyclin-J isoform 1 {ECO:0000313|EMBL:JAB05869.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029934}  [Source:UniProtKB/TrEMBL;Acc:F7I9P2]
ENSCJAG00000008502	KNOWN_BY_PROJECTION	protein_coding	FBXO40	chromosome:C_jacchus3.2.1:15:1:98464013:1	75406089	75445216	R	F-box protein 40 [Source:HGNC Symbol;Acc:HGNC:29816]
ENSCJAG00000008507	KNOWN_BY_PROJECTION	protein_coding	ARGFX	chromosome:C_jacchus3.2.1:15:1:98464013:1	75450799	75468709	R	arginine-fifty homeobox [Source:HGNC Symbol;Acc:HGNC:30146]
ENSCJAG00000018348	KNOWN	protein_coding	SRD5A3	chromosome:C_jacchus3.2.1:3:1:190850796:1	138207441	138228106	R	Putative polyprenol reductase {ECO:0000313|EMBL:JAB03721.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033972}  [Source:UniProtKB/TrEMBL;Acc:F6SQM7]
ENSCJAG00000008508	KNOWN_BY_PROJECTION	protein_coding	POLQ	chromosome:C_jacchus3.2.1:15:1:98464013:1	75540373	75609588	R	polymerase (DNA directed), theta [Source:HGNC Symbol;Acc:HGNC:9186]
ENSCJAG00000018352	KNOWN_BY_PROJECTION	protein_coding	KDR	chromosome:C_jacchus3.2.1:3:1:190850796:1	138448852	138497301	D	kinase insert domain receptor [Source:HGNC Symbol;Acc:HGNC:6307]
ENSCJAG00000008529	KNOWN	protein_coding	STXBP5L	chromosome:C_jacchus3.2.1:15:1:98464013:1	75686781	75962699	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015805}  [Source:UniProtKB/TrEMBL;Acc:F7GZ14]
ENSCJAG00000018055	KNOWN	protein_coding	ARID4B	chromosome:C_jacchus3.2.1:19:1:49578535:1	44934002	45090059	D	AT-rich interactive domain-containing protein 4B isoform 1 {ECO:0000313|EMBL:JAB11555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033494}  [Source:UniProtKB/TrEMBL;Acc:F6Q459]
ENSCJAG00000020244	KNOWN_BY_PROJECTION	protein_coding	CNTRL	chromosome:C_jacchus3.2.1:1:1:210400635:1	164728630	164811574	D	centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
ENSCJAG00000004979	KNOWN_BY_PROJECTION	protein_coding	KLC4	chromosome:C_jacchus3.2.1:4:1:171630274:1	44355430	44391093	D	kinesin light chain 4 [Source:HGNC Symbol;Acc:HGNC:21624]
ENSCJAG00000008584	NOVEL	protein_coding	ENSCJAG00000008584	chromosome:C_jacchus3.2.1:15:1:98464013:1	76074258	76075830	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017141}  [Source:UniProtKB/TrEMBL;Acc:F7IF14]
ENSCJAG00000008599	NOVEL	protein_coding	ENSCJAG00000008599	chromosome:C_jacchus3.2.1:15:1:98464013:1	76231533	76232940	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052395}  [Source:UniProtKB/TrEMBL;Acc:F7ILB3]
ENSCJAG00000008605	KNOWN	protein_coding	GTF2E1	chromosome:C_jacchus3.2.1:15:1:98464013:1	76261493	76301212	R	General transcription factor IIE subunit 1 {ECO:0000313|EMBL:JAB03298.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015845}  [Source:UniProtKB/TrEMBL;Acc:F7GNV1]
ENSCJAG00000008611	KNOWN	protein_coding	RABL3	chromosome:C_jacchus3.2.1:15:1:98464013:1	76301459	76340129	D	Rab-like protein 3 {ECO:0000313|EMBL:JAB05145.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015863}  [Source:UniProtKB/TrEMBL;Acc:F7GG26]
ENSCJAG00000001906	KNOWN_BY_PROJECTION	protein_coding	SPIC	chromosome:C_jacchus3.2.1:9:1:124281992:1	91621318	91730056	D	Spi-C transcription factor (Spi-1/PU.1 related) [Source:HGNC Symbol;Acc:HGNC:29549]
ENSCJAG00000020227	KNOWN	protein_coding	RAB14	chromosome:C_jacchus3.2.1:1:1:210400635:1	164812279	164836669	R	Ras-related protein Rab-14 {ECO:0000313|EMBL:JAB03802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037624}  [Source:UniProtKB/TrEMBL;Acc:F7BFK7]
ENSCJAG00000008626	KNOWN_BY_PROJECTION	protein_coding	HGD	chromosome:C_jacchus3.2.1:15:1:98464013:1	76348504	76403671	D	homogentisate 1,2-dioxygenase [Source:HGNC Symbol;Acc:HGNC:4892]
ENSCJAG00000016267	NOVEL	pseudogene	ENSCJAG00000016267	chromosome:C_jacchus3.2.1:12:1:121768101:1	83186800	83190847	D	<no descrition>
ENSCJAG00000010389	KNOWN_BY_PROJECTION	protein_coding	PPY	chromosome:C_jacchus3.2.1:5:1:159171411:1	76314160	76315765	R	pancreatic polypeptide [Source:HGNC Symbol;Acc:HGNC:9327]
ENSCJAG00000010381	KNOWN_BY_PROJECTION	protein_coding	PYY	chromosome:C_jacchus3.2.1:5:1:159171411:1	76328143	76329387	R	peptide YY [Source:HGNC Symbol;Acc:HGNC:9748]
ENSCJAG00000032163	NOVEL	protein_coding	ENSCJAG00000032163	chromosome:C_jacchus3.2.1:1:1:210400635:1	164876811	164878720	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052406}  [Source:UniProtKB/TrEMBL;Acc:F7IBX2]
ENSCJAG00000016270	KNOWN_BY_PROJECTION	protein_coding	BLNK	chromosome:C_jacchus3.2.1:12:1:121768101:1	83217734	83299169	R	B-cell linker [Source:HGNC Symbol;Acc:HGNC:14211]
ENSCJAG00000034507	NOVEL	pseudogene	ENSCJAG00000034507	chromosome:C_jacchus3.2.1:1:1:210400635:1	164916254	164916732	R	<no descrition>
ENSCJAG00000010358	KNOWN_BY_PROJECTION	protein_coding	NAGS	chromosome:C_jacchus3.2.1:5:1:159171411:1	76368525	76373662	D	N-acetylglutamate synthase [Source:HGNC Symbol;Acc:HGNC:17996]
ENSCJAG00000020216	NOVEL	protein_coding	ENSCJAG00000020216	chromosome:C_jacchus3.2.1:1:1:210400635:1	164936660	164968796	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037598}  [Source:UniProtKB/TrEMBL;Acc:F6VE63]
ENSCJAG00000008695	KNOWN	protein_coding	ENSCJAG00000008695	chromosome:C_jacchus3.2.1:15:1:98464013:1	76415650	76421759	R	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 isoform 1 {ECO:0000313|EMBL:JAB20804.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015984}  [Source:UniProtKB/TrEMBL;Acc:F7HJP1]
ENSCJAG00000010348	KNOWN	protein_coding	TMEM101	chromosome:C_jacchus3.2.1:5:1:159171411:1	76375465	76379688	R	Transmembrane protein 101 {ECO:0000313|EMBL:JAB06952.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019066}  [Source:UniProtKB/TrEMBL;Acc:F6T710]
ENSCJAG00000001900	NOVEL	protein_coding	ENSCJAG00000001900	chromosome:C_jacchus3.2.1:9:1:124281992:1	91646875	91647566	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003422}  [Source:UniProtKB/TrEMBL;Acc:F7H4T7]
ENSCJAG00000010335	KNOWN	protein_coding	LSM12	chromosome:C_jacchus3.2.1:5:1:159171411:1	76395130	76429409	R	Protein LSM12 homolog {ECO:0000313|EMBL:JAB02555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019050}  [Source:UniProtKB/TrEMBL;Acc:F6THZ7]
ENSCJAG00000020202	KNOWN	protein_coding	STOM	chromosome:C_jacchus3.2.1:1:1:210400635:1	164975436	165008116	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037574}  [Source:UniProtKB/TrEMBL;Acc:F6VYJ9]
ENSCJAG00000008700	KNOWN	protein_coding	FSTL1	chromosome:C_jacchus3.2.1:15:1:98464013:1	76527803	76591014	D	Follistatin-related protein 1 {ECO:0000313|EMBL:JAB11460.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016047}  [Source:UniProtKB/TrEMBL;Acc:F6WWN9]
ENSCJAG00000010326	KNOWN	protein_coding	G6PC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	76434258	76441454	D	Glucose-6-phosphatase 3 {ECO:0000313|EMBL:JAB16142.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019029}  [Source:UniProtKB/TrEMBL;Acc:F6PJG6]
ENSCJAG00000023118	KNOWN	protein_coding	SLC8A1	chromosome:C_jacchus3.2.1:14:1:108792865:1	67765726	68088539	D	Sodium/calcium exchanger 1 isoform A {ECO:0000313|EMBL:JAB32065.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042643}  [Source:UniProtKB/TrEMBL;Acc:F7A685]
ENSCJAG00000019305	KNOWN_BY_PROJECTION	protein_coding	DAK	chromosome:C_jacchus3.2.1:11:1:130397257:1	116653974	116662008	D	dihydroxyacetone kinase 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24552]
ENSCJAG00000008744	NOVEL	protein_coding	ENSCJAG00000008744	chromosome:C_jacchus3.2.1:15:1:98464013:1	76562629	76563684	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016059}  [Source:UniProtKB/TrEMBL;Acc:F6WVH3]
ENSCJAG00000018125	KNOWN	protein_coding	RBM34	chromosome:C_jacchus3.2.1:19:1:49578535:1	45093522	45122711	D	RNA-binding protein 34 isoform 1 {ECO:0000313|EMBL:JAB09899.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012078}  [Source:UniProtKB/TrEMBL;Acc:F7GNF7]
ENSCJAG00000008751	KNOWN	protein_coding	LRRC58	chromosome:C_jacchus3.2.1:15:1:98464013:1	76594978	76613679	D	Leucine-rich repeat-containing protein 58 {ECO:0000313|EMBL:JAB05355.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016074}  [Source:UniProtKB/TrEMBL;Acc:F6VS19]
ENSCJAG00000014886	NOVEL	pseudogene	ENSCJAG00000014886	chromosome:C_jacchus3.2.1:14:1:108792865:1	68368054	68368739	D	<no descrition>
ENSCJAG00000008758	KNOWN_BY_PROJECTION	protein_coding	GPR156	chromosome:C_jacchus3.2.1:15:1:98464013:1	76681151	76766488	D	G protein-coupled receptor 156 [Source:HGNC Symbol;Acc:HGNC:20844]
ENSCJAG00000014891	KNOWN	protein_coding	THUMPD2	chromosome:C_jacchus3.2.1:14:1:108792865:1	68443726	68488918	D	THUMP domain-containing protein 2 {ECO:0000313|EMBL:JAB28862.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027462}  [Source:UniProtKB/TrEMBL;Acc:F7G5B3]
ENSCJAG00000033979	NOVEL	protein_coding	ENSCJAG00000033979	chromosome:C_jacchus3.2.1:1:1:210400635:1	165037800	165040332	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048746}  [Source:UniProtKB/TrEMBL;Acc:F6QK50]
ENSCJAG00000035410	NOVEL	pseudogene	ENSCJAG00000035410	chromosome:C_jacchus3.2.1:15:1:98464013:1	76724327	76724930	D	<no descrition>
ENSCJAG00000014915	KNOWN_BY_PROJECTION	protein_coding	TMEM178A	chromosome:C_jacchus3.2.1:14:1:108792865:1	68506865	68561536	R	transmembrane protein 178A [Source:HGNC Symbol;Acc:HGNC:28517]
ENSCJAG00000020186	KNOWN	protein_coding	ENSCJAG00000020186	chromosome:C_jacchus3.2.1:1:1:210400635:1	165118974	165155920	R	Callithrix jacchus N-acetyllactosaminide alpha-1,3-galactosyltransferase-like (GGTA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001267732]
ENSCJAG00000008783	KNOWN	protein_coding	GSK3B	chromosome:C_jacchus3.2.1:15:1:98464013:1	76839098	77069285	D	Glycogen synthase kinase-3 beta isoform 1 {ECO:0000313|EMBL:JAB15890.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051282}  [Source:UniProtKB/TrEMBL;Acc:F6V0J0]
ENSCJAG00000019302	KNOWN_BY_PROJECTION	protein_coding	CYB561A3	chromosome:C_jacchus3.2.1:11:1:130397257:1	116664978	116672138	R	cytochrome b561 family, member A3 [Source:HGNC Symbol;Acc:HGNC:23014]
ENSCJAG00000010230	KNOWN	protein_coding	HDAC5	chromosome:C_jacchus3.2.1:5:1:159171411:1	76441859	76491149	R	Histone deacetylase 5 isoform 3 {ECO:0000313|EMBL:JAB11531.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019004}  [Source:UniProtKB/TrEMBL;Acc:F6PUT1]
ENSCJAG00000019299	KNOWN_BY_PROJECTION	protein_coding	TMEM216	chromosome:C_jacchus3.2.1:11:1:130397257:1	116712020	116717881	D	transmembrane protein 216 [Source:HGNC Symbol;Acc:HGNC:25018]
ENSCJAG00000019282	KNOWN_BY_PROJECTION	protein_coding	CPSF7	chromosome:C_jacchus3.2.1:11:1:130397257:1	116722201	116749368	R	cleavage and polyadenylation specific factor 7, 59kDa [Source:HGNC Symbol;Acc:HGNC:30098]
ENSCJAG00000008854	KNOWN	protein_coding	NR1I2	chromosome:C_jacchus3.2.1:15:1:98464013:1	77072123	77099140	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050325}  [Source:UniProtKB/TrEMBL;Acc:F7GNB3]
ENSCJAG00000018127	KNOWN	protein_coding	TOMM20	chromosome:C_jacchus3.2.1:19:1:49578535:1	45125525	45140961	D	Mitochondrial import receptor subunit TOM20 homolog {ECO:0000313|EMBL:JAB11813.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033532}  [Source:UniProtKB/TrEMBL;Acc:F6TRU7]
ENSCJAG00000014920	KNOWN	protein_coding	MAP4K3	chromosome:C_jacchus3.2.1:14:1:108792865:1	68794496	68985614	D	Mitogen-activated protein kinase kinase kinase kinase {ECO:0000256|PIRNR:PIRNR038172}  [Source:UniProtKB/TrEMBL;Acc:F6XUW1]
ENSCJAG00000020153	KNOWN_BY_PROJECTION	protein_coding	DAB2IP	chromosome:C_jacchus3.2.1:1:1:210400635:1	165499478	165530517	D	DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
ENSCJAG00000018139	KNOWN_BY_PROJECTION	protein_coding	IRF2BP2	chromosome:C_jacchus3.2.1:19:1:49578535:1	45659479	45665072	D	interferon regulatory factor 2 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:21729]
ENSCJAG00000008891	KNOWN_BY_PROJECTION	protein_coding	MAATS1	chromosome:C_jacchus3.2.1:15:1:98464013:1	77108013	77182063	R	MYCBP-associated, testis expressed 1 [Source:HGNC Symbol;Acc:HGNC:24010]
ENSCJAG00000019276	KNOWN	protein_coding	SDHAF2	chromosome:C_jacchus3.2.1:11:1:130397257:1	116749448	116766230	D	Succinate dehydrogenase assembly factor 2, mitochondrial {ECO:0000313|EMBL:JAB05114.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035772}  [Source:UniProtKB/TrEMBL;Acc:F7EFV1]
ENSCJAG00000019272	KNOWN_BY_PROJECTION	protein_coding	PPP1R32	chromosome:C_jacchus3.2.1:11:1:130397257:1	116806239	116817156	D	protein phosphatase 1, regulatory subunit 32 [Source:HGNC Symbol;Acc:HGNC:28869]
ENSCJAG00000018155	KNOWN_BY_PROJECTION	protein_coding	TARBP1	chromosome:C_jacchus3.2.1:19:1:49578535:1	45799886	45882722	D	TAR (HIV-1) RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11568]
ENSCJAG00000020144	KNOWN_BY_PROJECTION	protein_coding	TTLL11	chromosome:C_jacchus3.2.1:1:1:210400635:1	165561742	165854972	R	tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
ENSCJAG00000021864	KNOWN	protein_coding	LRRC10B	chromosome:C_jacchus3.2.1:11:1:130397257:1	116842393	116844439	D	Leucine-rich repeat-containing protein 10B {ECO:0000313|EMBL:JAB19587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040556}  [Source:UniProtKB/TrEMBL;Acc:F7IQY9]
ENSCJAG00000019261	KNOWN_BY_PROJECTION	protein_coding	SYT7	chromosome:C_jacchus3.2.1:11:1:130397257:1	116851607	116890093	R	synaptotagmin VII [Source:HGNC Symbol;Acc:HGNC:11514]
ENSCJAG00000019248	KNOWN	protein_coding	DAGLA	chromosome:C_jacchus3.2.1:11:1:130397257:1	117025044	117098140	D	Sn1-specific diacylglycerol lipase alpha {ECO:0000313|EMBL:JAB15886.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035740}  [Source:UniProtKB/TrEMBL;Acc:F7F864]
ENSCJAG00000010201	KNOWN_BY_PROJECTION	protein_coding	C17orf53	chromosome:C_jacchus3.2.1:5:1:159171411:1	76511573	76531953	D	chromosome 17 open reading frame 53 [Source:HGNC Symbol;Acc:HGNC:28460]
ENSCJAG00000020760	KNOWN_BY_PROJECTION	protein_coding	OIP5	chromosome:C_jacchus3.2.1:10:1:132174527:1	34574619	34593778	D	Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]
ENSCJAG00000008938	KNOWN	protein_coding	ENSCJAG00000008938	chromosome:C_jacchus3.2.1:15:1:98464013:1	77214153	77223092	D	Cytochrome c oxidase copper chaperone {ECO:0000313|EMBL:JAB04457.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016339}  [Source:UniProtKB/TrEMBL;Acc:F7BQW4]
ENSCJAG00000020761	KNOWN_BY_PROJECTION	protein_coding	CHP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	34617913	34668463	R	calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:HGNC:17433]
ENSCJAG00000008939	KNOWN	protein_coding	POPDC2	chromosome:C_jacchus3.2.1:15:1:98464013:1	77227326	77251860	D	Popeye domain-containing protein 2 {ECO:0000313|EMBL:JAB36460.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016355}  [Source:UniProtKB/TrEMBL;Acc:F7B755]
ENSCJAG00000010192	KNOWN_BY_PROJECTION	protein_coding	ASB16	chromosome:C_jacchus3.2.1:5:1:159171411:1	76538775	76554376	D	ankyrin repeat and SOCS box containing 16 [Source:HGNC Symbol;Acc:HGNC:19768]
ENSCJAG00000020139	KNOWN	protein_coding	NDUFA8	chromosome:C_jacchus3.2.1:1:1:210400635:1	165893118	165921990	R	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 {ECO:0000313|EMBL:JAB01951.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037449}  [Source:UniProtKB/TrEMBL;Acc:F7CDP2]
ENSCJAG00000020764	NOVEL	protein_coding	ENSCJAG00000020764	chromosome:C_jacchus3.2.1:10:1:132174527:1	34638102	34639312	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038625}  [Source:UniProtKB/TrEMBL;Acc:F7HXD4]
ENSCJAG00000018183	KNOWN_BY_PROJECTION	protein_coding	COA6	chromosome:C_jacchus3.2.1:19:1:49578535:1	45889809	45900754	R	cytochrome c oxidase assembly factor 6 [Source:HGNC Symbol;Acc:HGNC:18025]
ENSCJAG00000020765	KNOWN_BY_PROJECTION	protein_coding	EXD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	34642092	34710869	D	exonuclease 3'-5' domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28507]
ENSCJAG00000020137	KNOWN_BY_PROJECTION	protein_coding	MORN5	chromosome:C_jacchus3.2.1:1:1:210400635:1	165922083	165962427	D	MORN repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:17841]
ENSCJAG00000008949	KNOWN_BY_PROJECTION	protein_coding	PLA1A	chromosome:C_jacchus3.2.1:15:1:98464013:1	77265023	77302155	R	phospholipase A1 member A [Source:HGNC Symbol;Acc:HGNC:17661]
ENSCJAG00000018191	KNOWN_BY_PROJECTION	protein_coding	GSPT1	chromosome:C_jacchus3.2.1:19:1:49578535:1	45926929	45946762	D	G1 to S phase transition 1 [Source:HGNC Symbol;Acc:HGNC:4621]
ENSCJAG00000035081	KNOWN_BY_PROJECTION	protein_coding	CDKL4	chromosome:C_jacchus3.2.1:14:1:108792865:1	69008105	69083125	D	cyclin-dependent kinase-like 4 [Source:HGNC Symbol;Acc:HGNC:19287]
ENSCJAG00000010199	NOVEL	pseudogene	ENSCJAG00000010199	chromosome:C_jacchus3.2.1:5:1:159171411:1	76551634	76552840	R	<no descrition>
ENSCJAG00000015025	NOVEL	protein_coding	ENSCJAG00000015025	chromosome:C_jacchus3.2.1:14:1:108792865:1	69138386	69140845	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050237}  [Source:UniProtKB/TrEMBL;Acc:F7FC13]
ENSCJAG00000020122	KNOWN	protein_coding	LHX6	chromosome:C_jacchus3.2.1:1:1:210400635:1	165967262	165990976	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037430}  [Source:UniProtKB/TrEMBL;Acc:F6UUY9]
ENSCJAG00000010189	KNOWN_BY_PROJECTION	protein_coding	TMUB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	76562166	76566470	D	transmembrane and ubiquitin-like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28459]
ENSCJAG00000008966	KNOWN	protein_coding	ADPRH	chromosome:C_jacchus3.2.1:15:1:98464013:1	77311017	77320055	R	ADP-ribosylarginine hydrolase {ECO:0000313|EMBL:JAB03551.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016400}  [Source:UniProtKB/TrEMBL;Acc:F6YNG9]
ENSCJAG00000008972	KNOWN	protein_coding	CD80	chromosome:C_jacchus3.2.1:15:1:98464013:1	77334917	77364625	D	Callithrix jacchus CD80 molecule (CD80), mRNA. [Source:RefSeq mRNA;Acc:NM_001257221]
ENSCJAG00000018207	KNOWN_BY_PROJECTION	protein_coding	SLC35F3	chromosome:C_jacchus3.2.1:19:1:49578535:1	45973408	46367454	R	solute carrier family 35, member F3 [Source:HGNC Symbol;Acc:HGNC:23616]
ENSCJAG00000038104	NOVEL	protein_coding	ENSCJAG00000038104	chromosome:C_jacchus3.2.1:5:1:159171411:1	76564165	76566470	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018746}  [Source:UniProtKB/TrEMBL;Acc:F7EPB6]
ENSCJAG00000008990	KNOWN	protein_coding	TIMMDC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	77366470	77394525	R	Translocase of inner mitochondrial membrane domain-containing protein 1 {ECO:0000313|EMBL:JAB05658.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016462}  [Source:UniProtKB/TrEMBL;Acc:F6W8T5]
ENSCJAG00000018217	NOVEL	pseudogene	ENSCJAG00000018217	chromosome:C_jacchus3.2.1:19:1:49578535:1	46234297	46234732	D	<no descrition>
ENSCJAG00000019218	KNOWN_BY_PROJECTION	protein_coding	MYRF	chromosome:C_jacchus3.2.1:11:1:130397257:1	117120641	117142955	D	myelin regulatory factor [Source:HGNC Symbol;Acc:HGNC:1181]
ENSCJAG00000018218	KNOWN	protein_coding	KCNK1	chromosome:C_jacchus3.2.1:19:1:49578535:1	46543907	46600438	R	Potassium channel subfamily K member 1 {ECO:0000313|EMBL:JAB04325.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033717}  [Source:UniProtKB/TrEMBL;Acc:F6U0J3]
ENSCJAG00000015029	KNOWN_BY_PROJECTION	protein_coding	SOS1	chromosome:C_jacchus3.2.1:14:1:108792865:1	69150025	69285025	D	son of sevenless homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11187]
ENSCJAG00000010161	KNOWN	protein_coding	ATXN7L3	chromosome:C_jacchus3.2.1:5:1:159171411:1	76566546	76572525	R	Ataxin-7-like protein 3 {ECO:0000256|HAMAP-Rule:MF_03047}  [Source:UniProtKB/TrEMBL;Acc:F7EPC2]
ENSCJAG00000008999	KNOWN	protein_coding	POGLUT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	77399945	77423372	R	Protein O-glucosyltransferase 1 {ECO:0000313|EMBL:JAB08111.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016545}  [Source:UniProtKB/TrEMBL;Acc:F7BNR1]
ENSCJAG00000020116	KNOWN	protein_coding	RBM18	chromosome:C_jacchus3.2.1:1:1:210400635:1	166001702	166026819	R	Putative RNA-binding protein 18 {ECO:0000313|EMBL:JAB07411.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037384}  [Source:UniProtKB/TrEMBL;Acc:F6YGG9]
ENSCJAG00000019244	NOVEL	protein_coding	ENSCJAG00000019244	chromosome:C_jacchus3.2.1:11:1:130397257:1	117121632	117122547	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052098}  [Source:UniProtKB/TrEMBL;Acc:F7IEL7]
ENSCJAG00000018228	NOVEL	protein_coding	ENSCJAG00000018228	chromosome:C_jacchus3.2.1:19:1:49578535:1	46752012	46810078	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033798}  [Source:UniProtKB/TrEMBL;Acc:F6SG63]
ENSCJAG00000019216	KNOWN	protein_coding	TMEM258	chromosome:C_jacchus3.2.1:11:1:130397257:1	117145844	117149606	R	UPF0197 transmembrane protein C11orf10 {ECO:0000313|EMBL:JAB12031.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035674}  [Source:UniProtKB/TrEMBL;Acc:F7GXA9]
ENSCJAG00000020770	KNOWN	protein_coding	INO80	chromosome:C_jacchus3.2.1:10:1:132174527:1	34763252	34904840	D	DNA helicase INO80 {ECO:0000313|EMBL:JAB10707.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038654}  [Source:UniProtKB/TrEMBL;Acc:F7HPT2]
ENSCJAG00000036793	KNOWN	protein_coding	FEN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	117149677	117154493	D	Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_03140}  [Source:UniProtKB/TrEMBL;Acc:F7GXF8]
ENSCJAG00000009036	KNOWN	protein_coding	TMEM39A	chromosome:C_jacchus3.2.1:15:1:98464013:1	77428316	77465700	D	Transmembrane protein 39A {ECO:0000313|EMBL:JAB03034.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016588}  [Source:UniProtKB/TrEMBL;Acc:F6ZMT4]
ENSCJAG00000020779	KNOWN_BY_PROJECTION	protein_coding	CHAC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	34928292	34931494	R	ChaC glutathione-specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]
ENSCJAG00000019168	KNOWN_BY_PROJECTION	protein_coding	FADS2	chromosome:C_jacchus3.2.1:11:1:130397257:1	117154129	117314085	D	fatty acid desaturase 2 [Source:HGNC Symbol;Acc:HGNC:3575]
ENSCJAG00000009060	KNOWN	protein_coding	ARHGAP31	chromosome:C_jacchus3.2.1:15:1:98464013:1	77489746	77608877	R	Rho GTPase-activating protein 31 {ECO:0000313|EMBL:JAB17835.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016613}  [Source:UniProtKB/TrEMBL;Acc:F6YLE4]
ENSCJAG00000020781	KNOWN	protein_coding	DLL4	chromosome:C_jacchus3.2.1:10:1:132174527:1	34948272	34958258	R	Delta-like protein {ECO:0000256|RuleBase:RU280815}  [Source:UniProtKB/TrEMBL;Acc:F7IT15]
ENSCJAG00000009072	KNOWN_BY_PROJECTION	protein_coding	B4GALT4	chromosome:C_jacchus3.2.1:15:1:98464013:1	77660942	77679146	D	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:927]
ENSCJAG00000009095	KNOWN_BY_PROJECTION	protein_coding	UPK1B	chromosome:C_jacchus3.2.1:15:1:98464013:1	77685926	77714956	R	uroplakin 1B [Source:HGNC Symbol;Acc:HGNC:12578]
ENSCJAG00000020104	KNOWN_BY_PROJECTION	protein_coding	MRRF	chromosome:C_jacchus3.2.1:1:1:210400635:1	166026823	166100630	D	mitochondrial ribosome recycling factor [Source:HGNC Symbol;Acc:HGNC:7234]
ENSCJAG00000015081	KNOWN_BY_PROJECTION	protein_coding	ARHGEF33	chromosome:C_jacchus3.2.1:14:1:108792865:1	69296623	69355236	R	Rho guanine nucleotide exchange factor (GEF) 33 [Source:HGNC Symbol;Acc:HGNC:37252]
ENSCJAG00000001676	KNOWN_BY_PROJECTION	protein_coding	MYBPC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	91743836	91844618	D	myosin binding protein C, slow type [Source:HGNC Symbol;Acc:HGNC:7549]
ENSCJAG00000009123	KNOWN_BY_PROJECTION	protein_coding	C3orf30	chromosome:C_jacchus3.2.1:15:1:98464013:1	77749849	77755185	R	chromosome 3 open reading frame 30 [Source:HGNC Symbol;Acc:HGNC:26553]
ENSCJAG00000020789	KNOWN_BY_PROJECTION	protein_coding	VPS18	chromosome:C_jacchus3.2.1:10:1:132174527:1	34982749	34991968	R	vacuolar protein sorting 18 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:15972]
ENSCJAG00000015088	KNOWN	protein_coding	MORN2	chromosome:C_jacchus3.2.1:14:1:108792865:1	69391775	69399274	R	MORN repeat-containing protein 2 {ECO:0000313|EMBL:JAB02139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027812}  [Source:UniProtKB/TrEMBL;Acc:F7GTV7]
ENSCJAG00000020790	KNOWN	protein_coding	RHOV	chromosome:C_jacchus3.2.1:10:1:132174527:1	35012398	35014470	D	Rho-related GTP-binding protein RhoV {ECO:0000313|EMBL:JAB08933.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038677}  [Source:UniProtKB/TrEMBL;Acc:F7IT10]
ENSCJAG00000009128	KNOWN_BY_PROJECTION	protein_coding	IGSF11	chromosome:C_jacchus3.2.1:15:1:98464013:1	77755328	77963746	D	immunoglobulin superfamily, member 11 [Source:HGNC Symbol;Acc:HGNC:16669]
ENSCJAG00000019185	KNOWN_BY_PROJECTION	protein_coding	FADS1	chromosome:C_jacchus3.2.1:11:1:130397257:1	117159447	117172728	R	fatty acid desaturase 1 [Source:HGNC Symbol;Acc:HGNC:3574]
ENSCJAG00000009161	NOVEL	protein_coding	ENSCJAG00000009161	chromosome:C_jacchus3.2.1:15:1:98464013:1	79326588	79329015	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016793}  [Source:UniProtKB/TrEMBL;Acc:F7A391]
ENSCJAG00000033208	NOVEL	pseudogene	ENSCJAG00000033208	chromosome:C_jacchus3.2.1:15:1:98464013:1	79971462	79971907	R	<no descrition>
ENSCJAG00000009172	KNOWN_BY_PROJECTION	protein_coding	LSAMP	chromosome:C_jacchus3.2.1:15:1:98464013:1	80752093	81042923	D	limbic system-associated membrane protein [Source:HGNC Symbol;Acc:HGNC:6705]
ENSCJAG00000010066	KNOWN_BY_PROJECTION	protein_coding	UBTF	chromosome:C_jacchus3.2.1:5:1:159171411:1	76580344	76599747	R	upstream binding transcription factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12511]
ENSCJAG00000009175	KNOWN_BY_PROJECTION	protein_coding	GAP43	chromosome:C_jacchus3.2.1:15:1:98464013:1	81110529	81214994	R	growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]
ENSCJAG00000015097	KNOWN_BY_PROJECTION	protein_coding	DHX57	chromosome:C_jacchus3.2.1:14:1:108792865:1	69399357	69476395	D	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Source:HGNC Symbol;Acc:HGNC:20086]
ENSCJAG00000009201	NOVEL	protein_coding	ENSCJAG00000009201	chromosome:C_jacchus3.2.1:15:1:98464013:1	81750400	81751994	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052380}  [Source:UniProtKB/TrEMBL;Acc:F7ILD5]
ENSCJAG00000009207	NOVEL	protein_coding	ENSCJAG00000009207	chromosome:C_jacchus3.2.1:15:1:98464013:1	81931127	81931951	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016849}  [Source:UniProtKB/TrEMBL;Acc:F6XC88]
ENSCJAG00000009211	KNOWN_BY_PROJECTION	protein_coding	ZBTB20	chromosome:C_jacchus3.2.1:15:1:98464013:1	81960982	82528220	D	zinc finger and BTB domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13503]
ENSCJAG00000020078	KNOWN_BY_PROJECTION	protein_coding	PTGS1	chromosome:C_jacchus3.2.1:1:1:210400635:1	166150922	166177200	D	prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) [Source:HGNC Symbol;Acc:HGNC:9604]
ENSCJAG00000009240	KNOWN_BY_PROJECTION	protein_coding	TIGIT	chromosome:C_jacchus3.2.1:15:1:98464013:1	82557844	82572291	R	T cell immunoreceptor with Ig and ITIM domains [Source:HGNC Symbol;Acc:HGNC:26838]
ENSCJAG00000009248	KNOWN_BY_PROJECTION	protein_coding	ZNF80	chromosome:C_jacchus3.2.1:15:1:98464013:1	82590900	82593269	D	zinc finger protein 80 [Source:HGNC Symbol;Acc:HGNC:13155]
ENSCJAG00000018267	KNOWN_BY_PROJECTION	protein_coding	PCNXL2	chromosome:C_jacchus3.2.1:19:1:49578535:1	46843546	47158915	D	pecanex-like 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:8736]
ENSCJAG00000020793	KNOWN_BY_PROJECTION	protein_coding	SPINT1	chromosome:C_jacchus3.2.1:10:1:132174527:1	35031571	35049339	R	serine peptidase inhibitor, Kunitz type 1 [Source:HGNC Symbol;Acc:HGNC:11246]
ENSCJAG00000009251	KNOWN	protein_coding	DRD3	chromosome:C_jacchus3.2.1:15:1:98464013:1	82648634	82699636	D	D(3) dopamine receptor isoform a {ECO:0000313|EMBL:JAB13719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017000}  [Source:UniProtKB/TrEMBL;Acc:F7I391]
ENSCJAG00000018274	KNOWN	protein_coding	NTPCR	chromosome:C_jacchus3.2.1:19:1:49578535:1	47164239	47192791	R	Cancer-related nucleoside-triphosphatase {ECO:0000313|EMBL:JAB04275.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033828}  [Source:UniProtKB/TrEMBL;Acc:F6RI91]
ENSCJAG00000019150	KNOWN	protein_coding	FADS3	chromosome:C_jacchus3.2.1:11:1:130397257:1	117321387	117344760	R	Fatty acid desaturase 3 {ECO:0000313|EMBL:JAB02807.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035566}  [Source:UniProtKB/TrEMBL;Acc:F7EGP1]
ENSCJAG00000018278	KNOWN_BY_PROJECTION	protein_coding	MAP10	chromosome:C_jacchus3.2.1:19:1:49578535:1	47332246	47334972	R	microtubule-associated protein 10 [Source:HGNC Symbol;Acc:HGNC:29265]
ENSCJAG00000018281	KNOWN	protein_coding	SIPA1L2	chromosome:C_jacchus3.2.1:19:1:49578535:1	47602186	47718797	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033906}  [Source:UniProtKB/TrEMBL;Acc:F6PGQ9]
ENSCJAG00000009294	KNOWN_BY_PROJECTION	protein_coding	QTRTD1	chromosome:C_jacchus3.2.1:15:1:98464013:1	82730659	82762911	R	queuine tRNA-ribosyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25771]
ENSCJAG00000015169	KNOWN	protein_coding	GEMIN6	chromosome:C_jacchus3.2.1:14:1:108792865:1	69492700	69497025	R	Gem-associated protein 6 {ECO:0000313|EMBL:JAB09864.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027981}  [Source:UniProtKB/TrEMBL;Acc:F7H9C8]
ENSCJAG00000019137	KNOWN	protein_coding	RAB3IL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	117351086	117376878	R	Guanine nucleotide exchange factor for Rab-3A isoform 1 {ECO:0000313|EMBL:JAB07168.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035533}  [Source:UniProtKB/TrEMBL;Acc:F7I3Z1]
ENSCJAG00000015183	NOVEL	protein_coding	ENSCJAG00000015183	chromosome:C_jacchus3.2.1:14:1:108792865:1	69512634	69514380	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027984}  [Source:UniProtKB/TrEMBL;Acc:F7H9C1]
ENSCJAG00000020076	KNOWN_BY_PROJECTION	protein_coding	OR1N2	chromosome:C_jacchus3.2.1:1:1:210400635:1	166336726	166428289	D	olfactory receptor, family 1, subfamily N, member 2 [Source:HGNC Symbol;Acc:HGNC:15111]
ENSCJAG00000020074	KNOWN_BY_PROJECTION	protein_coding	OR1L8	chromosome:C_jacchus3.2.1:1:1:210400635:1	166355518	166383537	R	olfactory receptor, family 1, subfamily L, member 8 [Source:HGNC Symbol;Acc:HGNC:15110]
ENSCJAG00000009315	KNOWN_BY_PROJECTION	protein_coding	KIAA1407	chromosome:C_jacchus3.2.1:15:1:98464013:1	82763054	82862151	D	KIAA1407 [Source:HGNC Symbol;Acc:HGNC:29272]
ENSCJAG00000018323	KNOWN_BY_PROJECTION	protein_coding	DISC1	chromosome:C_jacchus3.2.1:19:1:49578535:1	48092394	48336336	R	disrupted in schizophrenia 1 [Source:HGNC Symbol;Acc:HGNC:2888]
ENSCJAG00000016325	KNOWN_BY_PROJECTION	protein_coding	DNTT	chromosome:C_jacchus3.2.1:12:1:121768101:1	83332221	83378821	D	DNA nucleotidylexotransferase [Source:HGNC Symbol;Acc:HGNC:2983]
ENSCJAG00000015185	KNOWN	protein_coding	SRSF7	chromosome:C_jacchus3.2.1:14:1:108792865:1	69525909	69534499	D	Serine/arginine-rich splicing factor 7 isoform 2 {ECO:0000313|EMBL:JAB08788.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028057}  [Source:UniProtKB/TrEMBL;Acc:F6VRH4]
ENSCJAG00000010065	NOVEL	pseudogene	ENSCJAG00000010065	chromosome:C_jacchus3.2.1:5:1:159171411:1	76609739	76610109	R	<no descrition>
ENSCJAG00000019095	KNOWN	protein_coding	BEST1	chromosome:C_jacchus3.2.1:11:1:130397257:1	117410905	117428395	D	Bestrophin-1 isoform 1 {ECO:0000313|EMBL:JAB23197.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035517}  [Source:UniProtKB/TrEMBL;Acc:F7I8L2]
ENSCJAG00000009334	NOVEL	protein_coding	ENSCJAG00000009334	chromosome:C_jacchus3.2.1:15:1:98464013:1	82856115	82856968	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017104}  [Source:UniProtKB/TrEMBL;Acc:F7IJS4]
ENSCJAG00000016362	KNOWN	protein_coding	OPALIN	chromosome:C_jacchus3.2.1:12:1:121768101:1	83389956	83403328	R	Opalin isoform a {ECO:0000313|EMBL:JAB17569.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030117}  [Source:UniProtKB/TrEMBL;Acc:F6WCK4]
ENSCJAG00000009345	KNOWN_BY_PROJECTION	protein_coding	ZDHHC23	chromosome:C_jacchus3.2.1:15:1:98464013:1	82863279	82878153	R	zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
ENSCJAG00000010019	KNOWN_BY_PROJECTION	protein_coding	SLC4A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	76622585	76643176	R	solute carrier family 4 (anion exchanger), member 1 (Diego blood group) [Source:HGNC Symbol;Acc:HGNC:11027]
ENSCJAG00000016371	KNOWN_BY_PROJECTION	protein_coding	TLL2	chromosome:C_jacchus3.2.1:12:1:121768101:1	83410816	83556406	R	tolloid-like 2 [Source:HGNC Symbol;Acc:HGNC:11844]
ENSCJAG00000020070	NOVEL	protein_coding	ENSCJAG00000020070	chromosome:C_jacchus3.2.1:1:1:210400635:1	166442048	166443696	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7B0I4]
ENSCJAG00000020063	KNOWN	protein_coding	PDCL	chromosome:C_jacchus3.2.1:1:1:210400635:1	166600327	166609793	R	Phosducin-like protein {ECO:0000313|EMBL:JAB02521.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037308}  [Source:UniProtKB/TrEMBL;Acc:F7BIF8]
ENSCJAG00000009359	KNOWN_BY_PROJECTION	protein_coding	GRAMD1C	chromosome:C_jacchus3.2.1:15:1:98464013:1	82880983	82982323	R	GRAM domain containing 1C [Source:HGNC Symbol;Acc:HGNC:25252]
ENSCJAG00000018325	KNOWN	protein_coding	TSNAX	chromosome:C_jacchus3.2.1:19:1:49578535:1	48394376	48456525	R	Translin-associated protein X {ECO:0000313|EMBL:JAB04897.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033928}  [Source:UniProtKB/TrEMBL;Acc:F6TPC4]
ENSCJAG00000018396	KNOWN_BY_PROJECTION	protein_coding	KIT	chromosome:C_jacchus3.2.1:3:1:190850796:1	138848398	138932796	R	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:HGNC:6342]
ENSCJAG00000018333	NOVEL	protein_coding	ENSCJAG00000018333	chromosome:C_jacchus3.2.1:19:1:49578535:1	48550645	48607071	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033941}  [Source:UniProtKB/TrEMBL;Acc:F6TCW8]
ENSCJAG00000018340	KNOWN	protein_coding	SPRTN	chromosome:C_jacchus3.2.1:19:1:49578535:1	48627125	48644249	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033953}  [Source:UniProtKB/TrEMBL;Acc:F6T2C0]
ENSCJAG00000020050	KNOWN	protein_coding	RC3H2	chromosome:C_jacchus3.2.1:1:1:210400635:1	166641321	166689124	R	RING finger and CCCH-type zinc finger domain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB10213.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037305}  [Source:UniProtKB/TrEMBL;Acc:F7BIJ6]
ENSCJAG00000019223	KNOWN_BY_PROJECTION	protein_coding	SLC9C1	chromosome:C_jacchus3.2.1:15:1:98464013:1	83073274	83086769	D	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 [Source:HGNC Symbol;Acc:HGNC:31401]
ENSCJAG00000019213	NOVEL	protein_coding	ENSCJAG00000019213	chromosome:C_jacchus3.2.1:15:1:98464013:1	83105323	83141065	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035683}  [Source:UniProtKB/TrEMBL;Acc:F7GSE4]
ENSCJAG00000016413	KNOWN_BY_PROJECTION	protein_coding	TM9SF3	chromosome:C_jacchus3.2.1:12:1:121768101:1	83563713	83621513	R	transmembrane 9 superfamily member 3 [Source:HGNC Symbol;Acc:HGNC:21529]
ENSCJAG00000019203	KNOWN_BY_PROJECTION	protein_coding	BTLA	chromosome:C_jacchus3.2.1:15:1:98464013:1	83228405	83265469	R	B and T lymphocyte associated [Source:HGNC Symbol;Acc:HGNC:21087]
ENSCJAG00000018350	KNOWN_BY_PROJECTION	protein_coding	GNPAT	chromosome:C_jacchus3.2.1:19:1:49578535:1	48654732	48693750	R	glyceronephosphate O-acyltransferase [Source:HGNC Symbol;Acc:HGNC:4416]
ENSCJAG00000019089	NOVEL	protein_coding	ENSCJAG00000019089	chromosome:C_jacchus3.2.1:11:1:130397257:1	117428232	117431515	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7IMT8]
ENSCJAG00000019086	NOVEL	pseudogene	ENSCJAG00000019086	chromosome:C_jacchus3.2.1:11:1:130397257:1	117431947	117432365	D	<no descrition>
ENSCJAG00000019069	KNOWN_BY_PROJECTION	protein_coding	INCENP	chromosome:C_jacchus3.2.1:11:1:130397257:1	117555755	117582708	D	inner centromere protein antigens 135/155kDa [Source:HGNC Symbol;Acc:HGNC:6058]
ENSCJAG00000020358	KNOWN	protein_coding	ATG3	chromosome:C_jacchus3.2.1:15:1:98464013:1	83348388	83376099	R	Autophagy-related protein 3 {ECO:0000256|RuleBase:RU004405}  [Source:UniProtKB/TrEMBL;Acc:F6ZCE1]
ENSCJAG00000019054	KNOWN	protein_coding	SCGB1D1	chromosome:C_jacchus3.2.1:11:1:130397257:1	117622321	117729224	D	Secretoglobin family 1D member 1 {ECO:0000313|EMBL:JAB02332.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035384}  [Source:UniProtKB/TrEMBL;Acc:F7HWZ1]
ENSCJAG00000009984	KNOWN_BY_PROJECTION	protein_coding	RUNDC3A	chromosome:C_jacchus3.2.1:5:1:159171411:1	76680826	76690050	D	RUN domain containing 3A [Source:HGNC Symbol;Acc:HGNC:16984]
ENSCJAG00000005136	KNOWN	protein_coding	PTK7	chromosome:C_jacchus3.2.1:4:1:171630274:1	44367941	44473681	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009406}  [Source:UniProtKB/TrEMBL;Acc:F7GM37]
ENSCJAG00000019064	KNOWN_BY_PROJECTION	protein_coding	SCGB2A1	chromosome:C_jacchus3.2.1:11:1:130397257:1	117640443	117645014	D	secretoglobin, family 2A, member 1 [Source:HGNC Symbol;Acc:HGNC:7051]
ENSCJAG00000019061	KNOWN_BY_PROJECTION	protein_coding	SCGB1D2	chromosome:C_jacchus3.2.1:11:1:130397257:1	117661794	117664353	D	secretoglobin, family 1D, member 2 [Source:HGNC Symbol;Acc:HGNC:18396]
ENSCJAG00000019059	NOVEL	protein_coding	ENSCJAG00000019059	chromosome:C_jacchus3.2.1:11:1:130397257:1	117698260	117702398	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035388}  [Source:UniProtKB/TrEMBL;Acc:F7HWY7]
ENSCJAG00000018415	KNOWN	protein_coding	PDGFRA	chromosome:C_jacchus3.2.1:3:1:190850796:1	139301762	139367102	R	Callithrix jacchus platelet-derived growth factor receptor, alpha polypeptide (PDGFRA), mRNA. [Source:RefSeq mRNA;Acc:NM_001270588]
ENSCJAG00000019052	NOVEL	protein_coding	ENSCJAG00000019052	chromosome:C_jacchus3.2.1:11:1:130397257:1	117751026	117753370	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035378}  [Source:UniProtKB/TrEMBL;Acc:F7HX05]
ENSCJAG00000019050	NOVEL	protein_coding	ENSCJAG00000019050	chromosome:C_jacchus3.2.1:11:1:130397257:1	117793768	117797628	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035374}  [Source:UniProtKB/TrEMBL;Acc:F7HX07]
ENSCJAG00000020355	KNOWN_BY_PROJECTION	protein_coding	SLC35A5	chromosome:C_jacchus3.2.1:15:1:98464013:1	83377575	83397982	D	solute carrier family 35, member A5 [Source:HGNC Symbol;Acc:HGNC:20792]
ENSCJAG00000019048	NOVEL	protein_coding	ENSCJAG00000019048	chromosome:C_jacchus3.2.1:11:1:130397257:1	117877104	117879337	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035370}  [Source:UniProtKB/TrEMBL;Acc:F7HX10]
ENSCJAG00000019035	NOVEL	protein_coding	ENSCJAG00000019035	chromosome:C_jacchus3.2.1:11:1:130397257:1	117938901	117991875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051517}  [Source:UniProtKB/TrEMBL;Acc:F6X8P6]
ENSCJAG00000020049	KNOWN	protein_coding	ZBTB6	chromosome:C_jacchus3.2.1:1:1:210400635:1	166703337	166706585	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037280}; Zinc finger and BTB domain-containing protein 6 {ECO:0000313|EMBL:JAB05487.1}  [Source:UniProtKB/TrEMBL;Acc:F6UWI3]
ENSCJAG00000021770	KNOWN	protein_coding	ZBTB26	chromosome:C_jacchus3.2.1:1:1:210400635:1	166710416	166723672	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040475}; Zinc finger and BTB domain-containing protein 26 {ECO:0000313|EMBL:JAB04589.1}  [Source:UniProtKB/TrEMBL;Acc:F7I4R8]
ENSCJAG00000019044	NOVEL	protein_coding	ENSCJAG00000019044	chromosome:C_jacchus3.2.1:11:1:130397257:1	117943553	117946150	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035363}  [Source:UniProtKB/TrEMBL;Acc:F7HZA5]
ENSCJAG00000019043	NOVEL	pseudogene	ENSCJAG00000019043	chromosome:C_jacchus3.2.1:11:1:130397257:1	117960533	117961064	R	<no descrition>
ENSCJAG00000019026	NOVEL	protein_coding	ENSCJAG00000019026	chromosome:C_jacchus3.2.1:11:1:130397257:1	117996114	117998362	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052427}  [Source:UniProtKB/TrEMBL;Acc:F7I787]
ENSCJAG00000016467	NOVEL	protein_coding	ENSCJAG00000016467	chromosome:C_jacchus3.2.1:12:1:121768101:1	83604634	83606008	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052059}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ0]
ENSCJAG00000009963	KNOWN	protein_coding	SLC25A39	chromosome:C_jacchus3.2.1:5:1:159171411:1	76691117	76696207	R	Solute carrier family 25 member 39 isoform a {ECO:0000313|EMBL:JAB18353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051856}  [Source:UniProtKB/TrEMBL;Acc:F6VZN0]
ENSCJAG00000016474	KNOWN	protein_coding	PIK3AP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	83644148	83775495	R	Phosphoinositide 3-kinase adapter protein 1 {ECO:0000313|EMBL:JAB19746.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030329}  [Source:UniProtKB/TrEMBL;Acc:F6XIP0]
ENSCJAG00000020341	KNOWN_BY_PROJECTION	protein_coding	CCDC80	chromosome:C_jacchus3.2.1:15:1:98464013:1	83416090	83458838	R	coiled-coil domain containing 80 [Source:HGNC Symbol;Acc:HGNC:30649]
ENSCJAG00000018454	KNOWN_BY_PROJECTION	protein_coding	GSX2	chromosome:C_jacchus3.2.1:3:1:190850796:1	139490109	139492021	R	GS homeobox 2 [Source:HGNC Symbol;Acc:HGNC:24959]
ENSCJAG00000018458	KNOWN	protein_coding	CHIC2	chromosome:C_jacchus3.2.1:3:1:190850796:1	139529772	139566830	D	Cysteine-rich hydrophobic domain 2 protein {ECO:0000313|EMBL:JAB02297.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034215}  [Source:UniProtKB/TrEMBL;Acc:F7CPW1]
ENSCJAG00000020027	KNOWN	protein_coding	RABGAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	166754392	167168817	D	Rab GTPase-activating protein 1 {ECO:0000313|EMBL:JAB07340.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037272}  [Source:UniProtKB/TrEMBL;Acc:F6UX59]
ENSCJAG00000016484	KNOWN	protein_coding	LCOR	chromosome:C_jacchus3.2.1:12:1:121768101:1	83893345	84014604	D	Ligand-dependent corepressor isoform 1 {ECO:0000313|EMBL:JAB25951.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042488}  [Source:UniProtKB/TrEMBL;Acc:F6Z6X6]
ENSCJAG00000018465	NOVEL	pseudogene	ENSCJAG00000018465	chromosome:C_jacchus3.2.1:3:1:190850796:1	139536029	139536907	R	<no descrition>
ENSCJAG00000004171	KNOWN_BY_PROJECTION	protein_coding	GALM	chromosome:C_jacchus3.2.1:14:1:108792865:1	69547951	69619684	R	galactose mutarotase (aldose 1-epimerase) [Source:HGNC Symbol;Acc:HGNC:24063]
ENSCJAG00000015229	NOVEL	pseudogene	ENSCJAG00000015229	chromosome:C_jacchus3.2.1:14:1:108792865:1	69562792	69564380	D	<no descrition>
ENSCJAG00000004169	NOVEL	protein_coding	ENSCJAG00000004169	chromosome:C_jacchus3.2.1:14:1:108792865:1	69642255	69644614	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043082}  [Source:UniProtKB/TrEMBL;Acc:F7HT39]
ENSCJAG00000037191	KNOWN_BY_PROJECTION	protein_coding	CD200R1L	chromosome:C_jacchus3.2.1:15:1:98464013:1	83609133	83617690	R	CD200 receptor 1-like [Source:HGNC Symbol;Acc:HGNC:24665]
ENSCJAG00000036372	KNOWN_BY_PROJECTION	protein_coding	SLIT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	84053624	84277397	R	slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
ENSCJAG00000018389	KNOWN_BY_PROJECTION	protein_coding	C1orf131	chromosome:C_jacchus3.2.1:19:1:49578535:1	48693805	48708565	D	chromosome 1 open reading frame 131 [Source:HGNC Symbol;Acc:HGNC:25332]
ENSCJAG00000019022	NOVEL	protein_coding	ENSCJAG00000019022	chromosome:C_jacchus3.2.1:11:1:130397257:1	118037374	118038649	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052450}  [Source:UniProtKB/TrEMBL;Acc:F7I4Q9]
ENSCJAG00000020339	KNOWN_BY_PROJECTION	protein_coding	CD200R1	chromosome:C_jacchus3.2.1:15:1:98464013:1	83681685	83732652	R	CD200 receptor 1 [Source:HGNC Symbol;Acc:HGNC:24235]
ENSCJAG00000019018	NOVEL	protein_coding	ENSCJAG00000019018	chromosome:C_jacchus3.2.1:11:1:130397257:1	118047419	118071234	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035331}  [Source:UniProtKB/TrEMBL;Acc:F7I415]
ENSCJAG00000018405	KNOWN_BY_PROJECTION	protein_coding	TRIM67	chromosome:C_jacchus3.2.1:19:1:49578535:1	48717006	48771860	R	tripartite motif containing 67 [Source:HGNC Symbol;Acc:HGNC:31859]
ENSCJAG00000019012	KNOWN_BY_PROJECTION	protein_coding	SCGB1A1	chromosome:C_jacchus3.2.1:11:1:130397257:1	118098767	118103126	D	secretoglobin, family 1A, member 1 (uteroglobin) [Source:HGNC Symbol;Acc:HGNC:12523]
ENSCJAG00000018467	NOVEL	pseudogene	ENSCJAG00000018467	chromosome:C_jacchus3.2.1:3:1:190850796:1	139589705	139590178	D	<no descrition>
ENSCJAG00000036030	KNOWN	protein_coding	AHNAK	chromosome:C_jacchus3.2.1:11:1:130397257:1	118113115	118218946	R	Neuroblast differentiation-associated protein AHNAK isoform 2 {ECO:0000313|EMBL:JAB11281.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035321}  [Source:UniProtKB/TrEMBL;Acc:F7I6E1]
ENSCJAG00000018425	NOVEL	pseudogene	ENSCJAG00000018425	chromosome:C_jacchus3.2.1:19:1:49578535:1	48858623	48859173	R	<no descrition>
ENSCJAG00000018997	KNOWN_BY_PROJECTION	protein_coding	AHNAK	chromosome:C_jacchus3.2.1:11:1:130397257:1	118188195	118201310	R	AHNAK nucleoprotein [Source:HGNC Symbol;Acc:HGNC:347]
ENSCJAG00000018427	NOVEL	protein_coding	ENSCJAG00000018427	chromosome:C_jacchus3.2.1:19:1:49578535:1	48882271	48901527	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048232}  [Source:UniProtKB/TrEMBL;Acc:F7EX97]
ENSCJAG00000020325	KNOWN_BY_PROJECTION	protein_coding	GTPBP8	chromosome:C_jacchus3.2.1:15:1:98464013:1	83744126	83754803	D	GTP-binding protein 8 (putative) [Source:HGNC Symbol;Acc:HGNC:25007]
ENSCJAG00000018429	KNOWN_BY_PROJECTION	protein_coding	ARV1	chromosome:C_jacchus3.2.1:19:1:49578535:1	48916719	48937666	R	ARV1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29561]
ENSCJAG00000018709	NOVEL	protein_coding	ENSCJAG00000018709	chromosome:C_jacchus3.2.1:11:1:130397257:1	118218728	118412547	R	<no descrition>
ENSCJAG00000004088	KNOWN	protein_coding	HNRNPLL	chromosome:C_jacchus3.2.1:14:1:108792865:1	69691928	69734821	D	Heterogeneous nuclear ribonucleoprotein L-like isoform 1 {ECO:0000313|EMBL:JAB02912.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044522}  [Source:UniProtKB/TrEMBL;Acc:F7GJS1]
ENSCJAG00000018469	KNOWN	protein_coding	LNX1	chromosome:C_jacchus3.2.1:3:1:190850796:1	139911743	140113196	D	E3 ubiquitin-protein ligase LNX isoform b {ECO:0000313|EMBL:JAB15530.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034270}  [Source:UniProtKB/TrEMBL;Acc:F7BBK4]
ENSCJAG00000018450	KNOWN_BY_PROJECTION	protein_coding	TTC13	chromosome:C_jacchus3.2.1:19:1:49578535:1	48957212	49012851	D	tetratricopeptide repeat domain 13 [Source:HGNC Symbol;Acc:HGNC:26204]
ENSCJAG00000012038	KNOWN	protein_coding	C1ORF198	chromosome:C_jacchus3.2.1:19:1:49578535:1	49075658	49104347	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022107}; Uncharacterized protein C1orf198 isoform 1 {ECO:0000313|EMBL:JAB02238.1}  [Source:UniProtKB/TrEMBL;Acc:F6YTF5]
ENSCJAG00000020314	KNOWN_BY_PROJECTION	protein_coding	C3orf17	chromosome:C_jacchus3.2.1:15:1:98464013:1	83757833	83772963	R	chromosome 3 open reading frame 17 [Source:HGNC Symbol;Acc:HGNC:24496]
ENSCJAG00000016511	NOVEL	pseudogene	ENSCJAG00000016511	chromosome:C_jacchus3.2.1:12:1:121768101:1	84237140	84237689	D	<no descrition>
ENSCJAG00000031919	NOVEL	protein_coding	ENSCJAG00000031919	chromosome:C_jacchus3.2.1:15:1:98464013:1	83893747	83895635	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051046}  [Source:UniProtKB/TrEMBL;Acc:F7CI26]
ENSCJAG00000018949	KNOWN	protein_coding	EEF1G	chromosome:C_jacchus3.2.1:11:1:130397257:1	118232651	118246410	R	Elongation factor 1-gamma {ECO:0000313|EMBL:JAB46686.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035253}  [Source:UniProtKB/TrEMBL;Acc:F7IIA9]
ENSCJAG00000020310	KNOWN_BY_PROJECTION	protein_coding	BOC	chromosome:C_jacchus3.2.1:15:1:98464013:1	83953509	84024687	D	BOC cell adhesion associated, oncogene regulated [Source:HGNC Symbol;Acc:HGNC:17173]
ENSCJAG00000020799	KNOWN_BY_PROJECTION	protein_coding	PPP1R14D	chromosome:C_jacchus3.2.1:10:1:132174527:1	35060817	35070450	D	protein phosphatase 1, regulatory (inhibitor) subunit 14D [Source:HGNC Symbol;Acc:HGNC:14953]
ENSCJAG00000016514	KNOWN	protein_coding	ARHGAP19	chromosome:C_jacchus3.2.1:12:1:121768101:1	84247250	84375139	R	Rho GTPase-activating protein 19 isoform 1 {ECO:0000313|EMBL:JAB08298.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030437}  [Source:UniProtKB/TrEMBL;Acc:F7BR66]
ENSCJAG00000011997	KNOWN_BY_PROJECTION	protein_coding	CAPN9	chromosome:C_jacchus3.2.1:19:1:49578535:1	49148403	49206526	R	calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
ENSCJAG00000020801	NOVEL	protein_coding	ENSCJAG00000020801	chromosome:C_jacchus3.2.1:10:1:132174527:1	35071666	35078126	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038699}  [Source:UniProtKB/TrEMBL;Acc:F7ISY7]
ENSCJAG00000020048	NOVEL	pseudogene	ENSCJAG00000020048	chromosome:C_jacchus3.2.1:1:1:210400635:1	166801700	166802078	R	<no descrition>
ENSCJAG00000020044	NOVEL	pseudogene	ENSCJAG00000020044	chromosome:C_jacchus3.2.1:1:1:210400635:1	166836299	166837303	D	<no descrition>
ENSCJAG00000020291	KNOWN_BY_PROJECTION	protein_coding	CFAP44	chromosome:C_jacchus3.2.1:15:1:98464013:1	84032212	84166842	R	cilia and flagella associated protein 44 [Source:HGNC Symbol;Acc:HGNC:25631]
ENSCJAG00000004030	KNOWN	protein_coding	ATL2	chromosome:C_jacchus3.2.1:14:1:108792865:1	69913608	69988471	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007420}  [Source:UniProtKB/TrEMBL;Acc:F6PHU8]
ENSCJAG00000019997	KNOWN	protein_coding	STRBP	chromosome:C_jacchus3.2.1:1:1:210400635:1	166925271	167078754	R	Spermatid perinuclear RNA-binding protein isoform 1 {ECO:0000313|EMBL:JAB08323.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037238}  [Source:UniProtKB/TrEMBL;Acc:F6WM32]
ENSCJAG00000018490	KNOWN	protein_coding	FIP1L1	chromosome:C_jacchus3.2.1:3:1:190850796:1	140108263	140188684	R	Callithrix jacchus FIP1 like 1 (S. cerevisiae) (FIP1L1), mRNA. [Source:RefSeq mRNA;Acc:NM_001270926]
ENSCJAG00000020284	KNOWN_BY_PROJECTION	protein_coding	SPICE1	chromosome:C_jacchus3.2.1:15:1:98464013:1	84171963	84248348	R	spindle and centriole associated protein 1 [Source:HGNC Symbol;Acc:HGNC:25083]
ENSCJAG00000020803	KNOWN	protein_coding	DNAJC17	chromosome:C_jacchus3.2.1:10:1:132174527:1	35078348	35128921	D	DnaJ homolog subfamily C member 17 {ECO:0000313|EMBL:JAB22077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038705}  [Source:UniProtKB/TrEMBL;Acc:F7IKX6]
ENSCJAG00000020289	NOVEL	protein_coding	ENSCJAG00000020289	chromosome:C_jacchus3.2.1:15:1:98464013:1	84243089	84244818	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037712}  [Source:UniProtKB/TrEMBL;Acc:F6WHG1]
ENSCJAG00000020806	KNOWN	protein_coding	GCHFR	chromosome:C_jacchus3.2.1:10:1:132174527:1	35129095	35132583	R	GTP cyclohydrolase 1 feedback regulatory protein {ECO:0000313|EMBL:JAB06915.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038707}  [Source:UniProtKB/TrEMBL;Acc:F7IKX2]
ENSCJAG00000009903	KNOWN_BY_PROJECTION	protein_coding	GRN	chromosome:C_jacchus3.2.1:5:1:159171411:1	76718442	76726822	D	granulin [Source:HGNC Symbol;Acc:HGNC:4601]
ENSCJAG00000020807	KNOWN_BY_PROJECTION	protein_coding	RMDN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	35150460	35172297	D	regulator of microtubule dynamics 3 [Source:HGNC Symbol;Acc:HGNC:25550]
ENSCJAG00000020266	KNOWN_BY_PROJECTION	protein_coding	SIDT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	84299728	84359082	D	SID1 transmembrane family, member 1 [Source:HGNC Symbol;Acc:HGNC:25967]
ENSCJAG00000016547	NOVEL	pseudogene	ENSCJAG00000016547	chromosome:C_jacchus3.2.1:12:1:121768101:1	84397507	84397963	D	<no descrition>
ENSCJAG00000020264	KNOWN_BY_PROJECTION	protein_coding	KIAA2018	chromosome:C_jacchus3.2.1:15:1:98464013:1	84376399	84397816	R	KIAA2018 [Source:HGNC Symbol;Acc:HGNC:30494]
ENSCJAG00000034836	NOVEL	pseudogene	ENSCJAG00000034836	chromosome:C_jacchus3.2.1:15:1:98464013:1	84396312	84396505	R	<no descrition>
ENSCJAG00000038114	NOVEL	protein_coding	ENSCJAG00000038114	chromosome:C_jacchus3.2.1:15:1:98464013:1	84403508	84409360	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052065}  [Source:UniProtKB/TrEMBL;Acc:F7IGY0]
ENSCJAG00000036417	NOVEL	protein_coding	ENSCJAG00000036417	chromosome:C_jacchus3.2.1:15:1:98464013:1	84404654	84416249	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052056}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ3]
ENSCJAG00000016549	KNOWN_BY_PROJECTION	protein_coding	RRP12	chromosome:C_jacchus3.2.1:12:1:121768101:1	84434377	84471608	R	ribosomal RNA processing 12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29100]
ENSCJAG00000009040	NOVEL	pseudogene	ENSCJAG00000009040	chromosome:C_jacchus3.2.1:15:1:98464013:1	84411416	84411549	R	<no descrition>
ENSCJAG00000033607	NOVEL	pseudogene	ENSCJAG00000033607	chromosome:C_jacchus3.2.1:15:1:98464013:1	84412712	84412817	R	<no descrition>
ENSCJAG00000006226	NOVEL	pseudogene	ENSCJAG00000006226	chromosome:C_jacchus3.2.1:15:1:98464013:1	84415115	84415248	D	<no descrition>
ENSCJAG00000033294	KNOWN_BY_PROJECTION	protein_coding	TUT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	118246534	118263763	R	terminal uridylyl transferase 1, U6 snRNA-specific [Source:HGNC Symbol;Acc:HGNC:26184]
ENSCJAG00000036358	NOVEL	protein_coding	ENSCJAG00000036358	chromosome:C_jacchus3.2.1:15:1:98464013:1	84445693	84457916	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052315}  [Source:UniProtKB/TrEMBL;Acc:F7HVF9]
ENSCJAG00000020261	KNOWN	protein_coding	NAA50	chromosome:C_jacchus3.2.1:15:1:98464013:1	84451389	84479422	R	N-alpha-acetyltransferase 50 {ECO:0000313|EMBL:JAB10952.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049324}  [Source:UniProtKB/TrEMBL;Acc:F6ZHB6]
ENSCJAG00000020821	KNOWN_BY_PROJECTION	protein_coding	RAD51	chromosome:C_jacchus3.2.1:10:1:132174527:1	35176782	35238256	R	RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]
ENSCJAG00000016575	KNOWN	protein_coding	PGAM1	chromosome:C_jacchus3.2.1:12:1:121768101:1	84494551	84503460	D	phosphoglycerate mutase 1  [Source:RefSeq peptide;Acc:NP_001240696]
ENSCJAG00000020256	KNOWN_BY_PROJECTION	protein_coding	ATP6V1A	chromosome:C_jacchus3.2.1:15:1:98464013:1	84479991	84541214	D	ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A [Source:HGNC Symbol;Acc:HGNC:851]
ENSCJAG00000016586	KNOWN	protein_coding	EXOSC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	84505261	84612182	R	Exosome complex component CSL4 {ECO:0000313|EMBL:JAB12476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030543}  [Source:UniProtKB/TrEMBL;Acc:F6WV46]
ENSCJAG00000011972	KNOWN_BY_PROJECTION	protein_coding	AGT	chromosome:C_jacchus3.2.1:19:1:49578535:1	49237506	49252164	D	angiotensinogen (serpin peptidase inhibitor, clade A, member 8) [Source:HGNC Symbol;Acc:HGNC:333]
ENSCJAG00000018928	KNOWN_BY_PROJECTION	protein_coding	MTA2	chromosome:C_jacchus3.2.1:11:1:130397257:1	118265334	118275853	R	metastasis associated 1 family, member 2 [Source:HGNC Symbol;Acc:HGNC:7411]
ENSCJAG00000018545	NOVEL	protein_coding	ENSCJAG00000018545	chromosome:C_jacchus3.2.1:3:1:190850796:1	140199256	140411553	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034409}  [Source:UniProtKB/TrEMBL;Acc:F7HU34]
ENSCJAG00000032777	NOVEL	protein_coding	ENSCJAG00000032777	chromosome:C_jacchus3.2.1:14:1:108792865:1	69995606	69996489	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051270}  [Source:UniProtKB/TrEMBL;Acc:F6V0W9]
ENSCJAG00000033441	NOVEL	protein_coding	ENSCJAG00000033441	chromosome:C_jacchus3.2.1:3:1:190850796:1	140617715	140662547	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045488}  [Source:UniProtKB/TrEMBL;Acc:F6Q3J1]
ENSCJAG00000004023	KNOWN_BY_PROJECTION	protein_coding	CYP1B1	chromosome:C_jacchus3.2.1:14:1:108792865:1	70188449	70194844	D	cytochrome P450, family 1, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2597]
ENSCJAG00000034105	NOVEL	pseudogene	ENSCJAG00000034105	chromosome:C_jacchus3.2.1:15:1:98464013:1	84500949	84501244	R	<no descrition>
ENSCJAG00000036814	NOVEL	protein_coding	ENSCJAG00000036814	chromosome:C_jacchus3.2.1:15:1:98464013:1	84513782	84518217	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052318}  [Source:UniProtKB/TrEMBL;Acc:F7HVF4]
ENSCJAG00000020255	NOVEL	protein_coding	ENSCJAG00000020255	chromosome:C_jacchus3.2.1:15:1:98464013:1	84561627	84562792	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037649}  [Source:UniProtKB/TrEMBL;Acc:F7AE35]
ENSCJAG00000035075	NOVEL	protein_coding	ENSCJAG00000035075	chromosome:C_jacchus3.2.1:15:1:98464013:1	84599093	84600157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052309}  [Source:UniProtKB/TrEMBL;Acc:F7HVJ5]
ENSCJAG00000009946	NOVEL	protein_coding	ENSCJAG00000009946	chromosome:C_jacchus3.2.1:15:1:98464013:1	84618930	84631108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037643}  [Source:UniProtKB/TrEMBL;Acc:F7AEA7]
ENSCJAG00000020245	KNOWN_BY_PROJECTION	protein_coding	C3orf52	chromosome:C_jacchus3.2.1:15:1:98464013:1	84646318	84673209	R	chromosome 3 open reading frame 52 [Source:HGNC Symbol;Acc:HGNC:26255]
ENSCJAG00000016605	KNOWN	protein_coding	ENSCJAG00000016605	chromosome:C_jacchus3.2.1:12:1:121768101:1	84517565	84529122	D	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F7BQ78]
ENSCJAG00000003996	KNOWN	protein_coding	RMDN2	chromosome:C_jacchus3.2.1:14:1:108792865:1	70243571	70315012	R	Regulator of microtubule dynamics protein 2 isoform 2 {ECO:0000313|EMBL:JAB08355.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007301}  [Source:UniProtKB/TrEMBL;Acc:F6S7Q3]
ENSCJAG00000020242	KNOWN_BY_PROJECTION	protein_coding	TMPRSS7	chromosome:C_jacchus3.2.1:15:1:98464013:1	84689164	84722734	R	transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
ENSCJAG00000018884	KNOWN	protein_coding	EML3	chromosome:C_jacchus3.2.1:11:1:130397257:1	118276253	118287181	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035136}  [Source:UniProtKB/TrEMBL;Acc:F7HZF2]
ENSCJAG00000003993	KNOWN	protein_coding	CDC42EP3	chromosome:C_jacchus3.2.1:14:1:108792865:1	70582415	70609833	D	Cdc42 effector protein 3 {ECO:0000313|EMBL:JAB10523.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049705}  [Source:UniProtKB/TrEMBL;Acc:F6VXN1]
ENSCJAG00000020237	KNOWN_BY_PROJECTION	protein_coding	TAGLN3	chromosome:C_jacchus3.2.1:15:1:98464013:1	84749196	84764381	R	transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
ENSCJAG00000018548	KNOWN	protein_coding	RASL11B	chromosome:C_jacchus3.2.1:3:1:190850796:1	140669182	140673651	R	Ras-like protein family member 11B {ECO:0000313|EMBL:JAB05022.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034434}  [Source:UniProtKB/TrEMBL;Acc:F7ISD9]
ENSCJAG00000020230	KNOWN_BY_PROJECTION	protein_coding	ABHD10	chromosome:C_jacchus3.2.1:15:1:98464013:1	84772264	84783582	R	abhydrolase domain containing 10 [Source:HGNC Symbol;Acc:HGNC:25656]
ENSCJAG00000003980	KNOWN	protein_coding	QPCT	chromosome:C_jacchus3.2.1:14:1:108792865:1	70902578	70932170	R	Glutaminyl-peptide cyclotransferase {ECO:0000313|EMBL:JAB13639.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007244}  [Source:UniProtKB/TrEMBL;Acc:F6PIC3]
ENSCJAG00000011909	KNOWN	protein_coding	COG2	chromosome:C_jacchus3.2.1:19:1:49578535:1	49259547	49314416	R	Conserved oligomeric Golgi complex subunit 2 isoform 1 {ECO:0000313|EMBL:JAB02274.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021969}  [Source:UniProtKB/TrEMBL;Acc:F6TD23]
ENSCJAG00000020212	KNOWN	protein_coding	PHLDB2	chromosome:C_jacchus3.2.1:15:1:98464013:1	84787493	84877297	R	Pleckstrin homology-like domain family B member 2 isoform a {ECO:0000313|EMBL:JAB04406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037593}  [Source:UniProtKB/TrEMBL;Acc:F6VEC5]
ENSCJAG00000005116	KNOWN	protein_coding	MRPL2	chromosome:C_jacchus3.2.1:4:1:171630274:1	44368316	44373637	R	39S ribosomal protein L2, mitochondrial {ECO:0000313|EMBL:JAB02367.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009360}  [Source:UniProtKB/TrEMBL;Acc:F7H807]
ENSCJAG00000018556	KNOWN_BY_PROJECTION	protein_coding	USP46	chromosome:C_jacchus3.2.1:3:1:190850796:1	140849894	140920874	D	ubiquitin specific peptidase 46 [Source:HGNC Symbol;Acc:HGNC:20075]
ENSCJAG00000020828	NOVEL	protein_coding	ENSCJAG00000020828	chromosome:C_jacchus3.2.1:10:1:132174527:1	35187848	35205388	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045898}  [Source:UniProtKB/TrEMBL;Acc:F6PQX7]
ENSCJAG00000006432	KNOWN_BY_PROJECTION	protein_coding	CRB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	167163142	167185190	D	crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
ENSCJAG00000018876	KNOWN	protein_coding	ROM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	118287157	118289547	D	Rod outer segment membrane protein 1 {ECO:0000313|EMBL:JAB10664.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035061}  [Source:UniProtKB/TrEMBL;Acc:F7IB94]
ENSCJAG00000003965	KNOWN	protein_coding	PRKD3	chromosome:C_jacchus3.2.1:14:1:108792865:1	70966059	71029041	D	Serine/threonine-protein kinase D {ECO:0000256|PIRNR:PIRNR000552}  [Source:UniProtKB/TrEMBL;Acc:F6PTR4]
ENSCJAG00000020228	NOVEL	pseudogene	ENSCJAG00000020228	chromosome:C_jacchus3.2.1:15:1:98464013:1	84950035	84951478	D	<no descrition>
ENSCJAG00000033361	KNOWN_BY_PROJECTION	protein_coding	PLCXD2	chromosome:C_jacchus3.2.1:15:1:98464013:1	85044817	85091773	R	phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26462]
ENSCJAG00000001667	KNOWN_BY_PROJECTION	protein_coding	CHPT1	chromosome:C_jacchus3.2.1:9:1:124281992:1	91856161	91886156	D	choline phosphotransferase 1 [Source:HGNC Symbol;Acc:HGNC:17852]
ENSCJAG00000020200	KNOWN_BY_PROJECTION	protein_coding	CD96	chromosome:C_jacchus3.2.1:15:1:98464013:1	85152686	85199349	R	CD96 molecule [Source:HGNC Symbol;Acc:HGNC:16892]
ENSCJAG00000018860	KNOWN	protein_coding	B3GAT3	chromosome:C_jacchus3.2.1:11:1:130397257:1	118289741	118298371	R	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 {ECO:0000313|EMBL:JAB10212.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035048}  [Source:UniProtKB/TrEMBL;Acc:F7IDK0]
ENSCJAG00000020209	KNOWN_BY_PROJECTION	protein_coding	ZBED2	chromosome:C_jacchus3.2.1:15:1:98464013:1	85185132	85187520	D	zinc finger, BED-type containing 2 [Source:HGNC Symbol;Acc:HGNC:20710]
ENSCJAG00000001658	KNOWN_BY_PROJECTION	protein_coding	SYCP3	chromosome:C_jacchus3.2.1:9:1:124281992:1	91885868	91897714	R	synaptonemal complex protein 3 [Source:HGNC Symbol;Acc:HGNC:18130]
ENSCJAG00000020199	NOVEL	protein_coding	ENSCJAG00000020199	chromosome:C_jacchus3.2.1:15:1:98464013:1	85238395	85238902	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037550}  [Source:UniProtKB/TrEMBL;Acc:F6WJ05]
ENSCJAG00000020182	KNOWN	protein_coding	PVRL3	chromosome:C_jacchus3.2.1:15:1:98464013:1	85564313	85690405	R	Poliovirus receptor-related protein 3 isoform 1 {ECO:0000313|EMBL:JAB06008.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037538}  [Source:UniProtKB/TrEMBL;Acc:F6X666]
ENSCJAG00000005223	KNOWN	protein_coding	SRF	chromosome:C_jacchus3.2.1:4:1:171630274:1	44486335	44495421	D	Serum response factor {ECO:0000313|EMBL:JAB06408.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009555}  [Source:UniProtKB/TrEMBL;Acc:F7HCX2]
ENSCJAG00000009865	KNOWN_BY_PROJECTION	protein_coding	FAM171A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	76727436	76737509	R	family with sequence similarity 171, member A2 [Source:HGNC Symbol;Acc:HGNC:30480]
ENSCJAG00000020196	NOVEL	protein_coding	ENSCJAG00000020196	chromosome:C_jacchus3.2.1:15:1:98464013:1	85636157	85636963	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037548}  [Source:UniProtKB/TrEMBL;Acc:F6X4S7]
ENSCJAG00000020192	NOVEL	pseudogene	ENSCJAG00000020192	chromosome:C_jacchus3.2.1:15:1:98464013:1	85654525	85655393	D	<no descrition>
ENSCJAG00000020830	KNOWN_BY_PROJECTION	protein_coding	GIMAP7	chromosome:C_jacchus3.2.1:10:1:132174527:1	35195095	35199815	R	GTPase, IMAP family member 7 [Source:HGNC Symbol;Acc:HGNC:22404]
ENSCJAG00000020181	NOVEL	protein_coding	ENSCJAG00000020181	chromosome:C_jacchus3.2.1:15:1:98464013:1	85855273	85856080	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037524}  [Source:UniProtKB/TrEMBL;Acc:F6YES0]
ENSCJAG00000033058	NOVEL	protein_coding	ENSCJAG00000033058	chromosome:C_jacchus3.2.1:15:1:98464013:1	86774690	86775479	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052378}  [Source:UniProtKB/TrEMBL;Acc:F7ILD9]
ENSCJAG00000020176	NOVEL	protein_coding	ENSCJAG00000020176	chromosome:C_jacchus3.2.1:15:1:98464013:1	87046202	87047521	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052240}  [Source:UniProtKB/TrEMBL;Acc:F7IJ71]
ENSCJAG00000020831	KNOWN_BY_PROJECTION	protein_coding	CASC5	chromosome:C_jacchus3.2.1:10:1:132174527:1	35293857	35341270	R	cancer susceptibility candidate 5 [Source:HGNC Symbol;Acc:HGNC:24054]
ENSCJAG00000006461	KNOWN	protein_coding	DENND1A	chromosome:C_jacchus3.2.1:1:1:210400635:1	167189476	167746618	R	DENN domain-containing protein 1A isoform 1 {ECO:0000313|EMBL:JAB07880.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011976}  [Source:UniProtKB/TrEMBL;Acc:F7FKW3]
ENSCJAG00000020171	NOVEL	protein_coding	ENSCJAG00000020171	chromosome:C_jacchus3.2.1:15:1:98464013:1	87395029	87408561	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037516}  [Source:UniProtKB/TrEMBL;Acc:F6YFS1]
ENSCJAG00000020168	KNOWN_BY_PROJECTION	protein_coding	DPPA2	chromosome:C_jacchus3.2.1:15:1:98464013:1	87415172	87428898	D	developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:HGNC:19197]
ENSCJAG00000016651	KNOWN_BY_PROJECTION	protein_coding	MMS19	chromosome:C_jacchus3.2.1:12:1:121768101:1	84529701	84572631	R	MMS19 nucleotide excision repair homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:13824]
ENSCJAG00000009821	KNOWN_BY_PROJECTION	protein_coding	ITGA2B	chromosome:C_jacchus3.2.1:5:1:159171411:1	76744940	76764322	R	integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) [Source:HGNC Symbol;Acc:HGNC:6138]
ENSCJAG00000034392	NOVEL	pseudogene	ENSCJAG00000034392	chromosome:C_jacchus3.2.1:15:1:98464013:1	87465504	87465843	D	<no descrition>
ENSCJAG00000033917	NOVEL	protein_coding	ENSCJAG00000033917	chromosome:C_jacchus3.2.1:15:1:98464013:1	87478962	87479588	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049012}  [Source:UniProtKB/TrEMBL;Acc:F6Z1C7]
ENSCJAG00000020164	NOVEL	pseudogene	ENSCJAG00000020164	chromosome:C_jacchus3.2.1:15:1:98464013:1	87532072	87532450	R	<no descrition>
ENSCJAG00000003932	KNOWN_BY_PROJECTION	protein_coding	NDUFAF7	chromosome:C_jacchus3.2.1:14:1:108792865:1	71033273	71048881	R	NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 [Source:HGNC Symbol;Acc:HGNC:28816]
ENSCJAG00000020148	KNOWN_BY_PROJECTION	protein_coding	MORC1	chromosome:C_jacchus3.2.1:15:1:98464013:1	87657346	87842537	D	MORC family CW-type zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:7198]
ENSCJAG00000011901	KNOWN_BY_PROJECTION	protein_coding	PGBD5	chromosome:C_jacchus3.2.1:19:1:49578535:1	49546929	49566942	D	piggyBac transposable element derived 5 [Source:HGNC Symbol;Acc:HGNC:19405]
ENSCJAG00000020841	KNOWN_BY_PROJECTION	protein_coding	RPUSD2	chromosome:C_jacchus3.2.1:10:1:132174527:1	35361585	35366830	R	RNA pseudouridylate synthase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24180]
ENSCJAG00000031860	NOVEL	protein_coding	ENSCJAG00000031860	scaffold:C_jacchus3.2.1:ACFV01192510.1:1:4785:1	579	1394	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052022}  [Source:UniProtKB/TrEMBL;Acc:H9KYK8]
ENSCJAG00000000714	NOVEL	pseudogene	ENSCJAG00000000714	scaffold:C_jacchus3.2.1:GL285806.1:1:82370:1	898	1942	D	<no descrition>
ENSCJAG00000000717	NOVEL	pseudogene	ENSCJAG00000000717	scaffold:C_jacchus3.2.1:GL285806.1:1:82370:1	20749	21548	R	<no descrition>
ENSCJAG00000011085	NOVEL	pseudogene	ENSCJAG00000011085	scaffold:C_jacchus3.2.1:ACFV01201056.1:1:2125:1	587	1368	D	<no descrition>
ENSCJAG00000009807	KNOWN	protein_coding	GPATCH8	chromosome:C_jacchus3.2.1:5:1:159171411:1	76773661	76886936	R	G patch domain-containing protein 8 {ECO:0000313|EMBL:JAB08057.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017990}  [Source:UniProtKB/TrEMBL;Acc:F7I4Y4]
ENSCJAG00000005240	KNOWN	protein_coding	CUL9	chromosome:C_jacchus3.2.1:4:1:171630274:1	44496951	44551548	D	Cullin-9 {ECO:0000313|EMBL:JAB06644.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009742}  [Source:UniProtKB/TrEMBL;Acc:F7GWY1]
ENSCJAG00000020156	KNOWN_BY_PROJECTION	protein_coding	GUCA1C	chromosome:C_jacchus3.2.1:15:1:98464013:1	87845991	87878076	D	guanylate cyclase activator 1C [Source:HGNC Symbol;Acc:HGNC:4680]
ENSCJAG00000001633	KNOWN	protein_coding	GNPTAB	chromosome:C_jacchus3.2.1:9:1:124281992:1	91906419	91988144	R	N-acetylglucosamine-1-phosphotransferase subunits alpha/beta {ECO:0000313|EMBL:JAB05547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002938}  [Source:UniProtKB/TrEMBL;Acc:F7HX94]
ENSCJAG00000019787	KNOWN_BY_PROJECTION	protein_coding	UGT3A1	scaffold:C_jacchus3.2.1:ACFV01179390.1:1:21412:1	391	20435	D	UDP glycosyltransferase 3 family, polypeptide A1 [Source:HGNC Symbol;Acc:HGNC:26625]
ENSCJAG00000020142	KNOWN_BY_PROJECTION	protein_coding	TRAT1	chromosome:C_jacchus3.2.1:15:1:98464013:1	87931536	88188616	R	T cell receptor associated transmembrane adaptor 1 [Source:HGNC Symbol;Acc:HGNC:30698]
ENSCJAG00000032142	NOVEL	protein_coding	ENSCJAG00000032142	scaffold:C_jacchus3.2.1:ACFV01189621.1:1:5410:1	1930	4720	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003466}  [Source:UniProtKB/TrEMBL;Acc:H9KVQ2]
ENSCJAG00000001008	NOVEL	protein_coding	ENSCJAG00000001008	scaffold:C_jacchus3.2.1:ACFV01185852.1:1:12283:1	988	11623	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001720}  [Source:UniProtKB/TrEMBL;Acc:H9KVN5]
ENSCJAG00000031384	NOVEL	protein_coding	ENSCJAG00000031384	chromosome:C_jacchus3.2.1:15:1:98464013:1	87981998	87982791	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032104}  [Source:UniProtKB/TrEMBL;Acc:F7GRP6]
ENSCJAG00000032265	NOVEL	protein_coding	ENSCJAG00000032265	scaffold:C_jacchus3.2.1:ACFV01197335.1:1:2407:1	298	1428	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030480}  [Source:UniProtKB/TrEMBL;Acc:H9KX81]
ENSCJAG00000018578	NOVEL	protein_coding	ENSCJAG00000018578	chromosome:C_jacchus3.2.1:3:1:190850796:1	141172062	141172439	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034474}  [Source:UniProtKB/TrEMBL;Acc:F7IKC9]
ENSCJAG00000033824	NOVEL	protein_coding	ENSCJAG00000033824	chromosome:C_jacchus3.2.1:5:1:159171411:1	76905516	76906408	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040310}  [Source:UniProtKB/TrEMBL;Acc:F7I071]
ENSCJAG00000016095	NOVEL	protein_coding	ENSCJAG00000016095	scaffold:C_jacchus3.2.1:GL285954.1:1:11951:1	9023	11494	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029621}  [Source:UniProtKB/TrEMBL;Acc:H9KX65]
ENSCJAG00000018594	KNOWN	protein_coding	SPATA18	chromosome:C_jacchus3.2.1:3:1:190850796:1	141352227	141394453	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034516}  [Source:UniProtKB/TrEMBL;Acc:F7ID63]
ENSCJAG00000008134	NOVEL	pseudogene	ENSCJAG00000008134	scaffold:C_jacchus3.2.1:ACFV01191195.1:1:4724:1	1378	3247	D	<no descrition>
ENSCJAG00000009672	NOVEL	protein_coding	ENSCJAG00000009672	scaffold:C_jacchus3.2.1:GL285849.1:1:83312:1	78204	79949	D	60S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572}  [Source:UniProtKB/TrEMBL;Acc:H9KWM0]
ENSCJAG00000015740	NOVEL	pseudogene	ENSCJAG00000015740	chromosome:C_jacchus3.2.1:5:1:159171411:1	76968400	76970097	D	<no descrition>
ENSCJAG00000005143	KNOWN	protein_coding	DZIP3	chromosome:C_jacchus3.2.1:15:1:98464013:1	88191115	88291648	R	E3 ubiquitin-protein ligase DZIP3 {ECO:0000313|EMBL:JAB26782.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009543}  [Source:UniProtKB/TrEMBL;Acc:F7HI26]
ENSCJAG00000016265	NOVEL	pseudogene	ENSCJAG00000016265	scaffold:C_jacchus3.2.1:ACFV01186765.1:1:7490:1	6815	7488	R	<no descrition>
ENSCJAG00000018826	KNOWN_BY_PROJECTION	protein_coding	GANAB	chromosome:C_jacchus3.2.1:11:1:130397257:1	118300359	118324664	R	glucosidase, alpha; neutral AB [Source:HGNC Symbol;Acc:HGNC:4138]
ENSCJAG00000018579	KNOWN_BY_PROJECTION	protein_coding	SGCB	chromosome:C_jacchus3.2.1:3:1:190850796:1	141408314	141421770	D	sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:HGNC:10806]
ENSCJAG00000003858	KNOWN	protein_coding	CEBPZ	chromosome:C_jacchus3.2.1:14:1:108792865:1	71048946	71080665	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007131}  [Source:UniProtKB/TrEMBL;Acc:F6RZ07]
ENSCJAG00000011685	KNOWN	protein_coding	ALDH3A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	77053852	77087882	D	Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}  [Source:UniProtKB/TrEMBL;Acc:F6TG74]
ENSCJAG00000014225	KNOWN	protein_coding	CCDC53	chromosome:C_jacchus3.2.1:9:1:124281992:1	92113285	92160630	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026188}; WASH complex subunit CCDC53 {ECO:0000313|EMBL:JAB03118.1}  [Source:UniProtKB/TrEMBL;Acc:F7I4Q8]
ENSCJAG00000018599	KNOWN_BY_PROJECTION	protein_coding	LRRC66	chromosome:C_jacchus3.2.1:3:1:190850796:1	141427186	141451769	D	leucine rich repeat containing 66 [Source:HGNC Symbol;Acc:HGNC:34299]
ENSCJAG00000005069	KNOWN_BY_PROJECTION	protein_coding	KIAA1524	chromosome:C_jacchus3.2.1:15:1:98464013:1	88291716	88334006	D	KIAA1524 [Source:HGNC Symbol;Acc:HGNC:29302]
ENSCJAG00000003850	KNOWN_BY_PROJECTION	protein_coding	SULT6B1	chromosome:C_jacchus3.2.1:14:1:108792865:1	71104648	71127947	D	sulfotransferase family, cytosolic, 6B, member 1 [Source:HGNC Symbol;Acc:HGNC:33433]
ENSCJAG00000013707	NOVEL	protein_coding	ENSCJAG00000013707	scaffold:C_jacchus3.2.1:GL285861.1:1:343673:1	309720	323882	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025204}  [Source:UniProtKB/TrEMBL;Acc:H9KX11]
ENSCJAG00000006496	KNOWN_BY_PROJECTION	protein_coding	LHX2	chromosome:C_jacchus3.2.1:1:1:210400635:1	167827508	167846926	D	LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594]
ENSCJAG00000020842	KNOWN_BY_PROJECTION	protein_coding	C15orf57	chromosome:C_jacchus3.2.1:10:1:132174527:1	35371798	35409419	D	chromosome 15 open reading frame 57 [Source:HGNC Symbol;Acc:HGNC:28295]
ENSCJAG00000031947	NOVEL	protein_coding	ENSCJAG00000031947	chromosome:C_jacchus3.2.1:17:1:74750902:1	721680	722650	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046055}  [Source:UniProtKB/TrEMBL;Acc:F6ZBK5]
ENSCJAG00000033566	NOVEL	protein_coding	ENSCJAG00000033566	chromosome:C_jacchus3.2.1:17:1:74750902:1	1365154	1366423	D	Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}  [Source:UniProtKB/TrEMBL;Acc:F7IJ64]
ENSCJAG00000018601	KNOWN	protein_coding	DCUN1D4	chromosome:C_jacchus3.2.1:3:1:190850796:1	141537077	141617405	R	DCN1-like protein {ECO:0000256|RuleBase:RU410713}  [Source:UniProtKB/TrEMBL;Acc:F7I654]
ENSCJAG00000034586	NOVEL	protein_coding	ENSCJAG00000034586	chromosome:C_jacchus3.2.1:15:1:98464013:1	88338199	88344561	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007566}  [Source:UniProtKB/TrEMBL;Acc:F6R7K4]
ENSCJAG00000003819	KNOWN_BY_PROJECTION	protein_coding	EIF2AK2	chromosome:C_jacchus3.2.1:14:1:108792865:1	71139243	71182030	D	eukaryotic translation initiation factor 2-alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]
ENSCJAG00000016722	KNOWN	protein_coding	UBTD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	84573261	84634108	D	Ubiquitin domain-containing protein 1 {ECO:0000313|EMBL:JAB01770.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030767}  [Source:UniProtKB/TrEMBL;Acc:F6VPE1]
ENSCJAG00000005009	KNOWN_BY_PROJECTION	protein_coding	MYH15	chromosome:C_jacchus3.2.1:15:1:98464013:1	88347855	88524544	D	myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
ENSCJAG00000014245	KNOWN	protein_coding	NUP37	chromosome:C_jacchus3.2.1:9:1:124281992:1	92172663	92223159	R	Nucleoporin Nup37 {ECO:0000313|EMBL:JAB03954.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026223}  [Source:UniProtKB/TrEMBL;Acc:F7HQJ9]
ENSCJAG00000023198	NOVEL	protein_coding	ENSCJAG00000023198	chromosome:C_jacchus3.2.1:10:1:132174527:1	35376225	35377248	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045892}  [Source:UniProtKB/TrEMBL;Acc:F6PR26]
ENSCJAG00000006507	KNOWN_BY_PROJECTION	protein_coding	NEK6	chromosome:C_jacchus3.2.1:1:1:210400635:1	168073110	168174597	D	NIMA-related kinase 6 [Source:HGNC Symbol;Acc:HGNC:7749]
ENSCJAG00000002082	KNOWN	protein_coding	TBL1XR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	1415555	1610262	D	F-box-like/WD repeat-containing protein TBL1XR1 {ECO:0000313|EMBL:JAB09395.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045723}  [Source:UniProtKB/TrEMBL;Acc:F6T3Y0]
ENSCJAG00000020849	KNOWN	protein_coding	BAHD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	35496147	35523580	R	Bromo adjacent homology domain-containing 1 protein {ECO:0000313|EMBL:JAB29091.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038783}  [Source:UniProtKB/TrEMBL;Acc:F7IDR6]
ENSCJAG00000020852	KNOWN_BY_PROJECTION	protein_coding	IVD	chromosome:C_jacchus3.2.1:10:1:132174527:1	35548210	35562466	R	isovaleryl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:6186]
ENSCJAG00000004994	KNOWN_BY_PROJECTION	protein_coding	HHLA2	chromosome:C_jacchus3.2.1:15:1:98464013:1	88541318	88613670	R	HERV-H LTR-associating 2 [Source:HGNC Symbol;Acc:HGNC:4905]
ENSCJAG00000016726	KNOWN_BY_PROJECTION	protein_coding	ANKRD2	chromosome:C_jacchus3.2.1:12:1:121768101:1	84635398	84647799	D	ankyrin repeat domain 2 (stretch responsive muscle) [Source:HGNC Symbol;Acc:HGNC:495]
ENSCJAG00000003790	KNOWN	protein_coding	GPATCH11	chromosome:C_jacchus3.2.1:14:1:108792865:1	71186208	71198368	R	Coiled-coil domain-containing protein 75 {ECO:0000313|EMBL:JAB01944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006922}  [Source:UniProtKB/TrEMBL;Acc:F7H5K5]
ENSCJAG00000004974	KNOWN_BY_PROJECTION	protein_coding	IFT57	chromosome:C_jacchus3.2.1:15:1:98464013:1	88679482	88739796	D	intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
ENSCJAG00000014265	KNOWN_BY_PROJECTION	protein_coding	PARPBP	chromosome:C_jacchus3.2.1:9:1:124281992:1	92228768	92293127	D	PARP1 binding protein [Source:HGNC Symbol;Acc:HGNC:26074]
ENSCJAG00000020854	KNOWN_BY_PROJECTION	protein_coding	KNSTRN	chromosome:C_jacchus3.2.1:10:1:132174527:1	35575752	35586028	R	kinetochore-localized astrin/SPAG5 binding protein [Source:HGNC Symbol;Acc:HGNC:30767]
ENSCJAG00000006592	KNOWN_BY_PROJECTION	protein_coding	GPR144	chromosome:C_jacchus3.2.1:1:1:210400635:1	168148063	168296427	D	G protein-coupled receptor 144 [Source:HGNC Symbol;Acc:HGNC:18651]
ENSCJAG00000011748	KNOWN_BY_PROJECTION	protein_coding	SLC47A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	77089306	77123625	R	solute carrier family 47 (multidrug and toxin extrusion), member 2 [Source:HGNC Symbol;Acc:HGNC:26439]
ENSCJAG00000020859	KNOWN_BY_PROJECTION	protein_coding	DISP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	35597540	35610325	R	dispatched homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19712]
ENSCJAG00000016755	KNOWN	protein_coding	PI4K2A	chromosome:C_jacchus3.2.1:12:1:121768101:1	84648306	84748404	D	Putative 4-hydroxy-2-oxoglutarate aldolase, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB17577.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030796}  [Source:UniProtKB/TrEMBL;Acc:F6UHE6]
ENSCJAG00000004949	KNOWN	protein_coding	CD47	chromosome:C_jacchus3.2.1:15:1:98464013:1	88820447	88867365	D	Leukocyte surface antigen CD47 isoform 1 {ECO:0000313|EMBL:JAB08300.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009073}  [Source:UniProtKB/TrEMBL;Acc:F7I1R1]
ENSCJAG00000018821	KNOWN	protein_coding	INTS5	chromosome:C_jacchus3.2.1:11:1:130397257:1	118324896	118332776	R	Integrator complex subunit 5 {ECO:0000313|EMBL:JAB07683.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034957}  [Source:UniProtKB/TrEMBL;Acc:F7I5W1]
ENSCJAG00000018789	KNOWN_BY_PROJECTION	protein_coding	LBHD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	118343174	118349893	R	LBH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28351]
ENSCJAG00000018816	KNOWN	protein_coding	METTL12	chromosome:C_jacchus3.2.1:11:1:130397257:1	118344911	118346568	D	Methyltransferase-like protein 12, mitochondrial {ECO:0000313|EMBL:JAB03563.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034953}  [Source:UniProtKB/TrEMBL;Acc:F7I5W5]
ENSCJAG00000018787	KNOWN_BY_PROJECTION	protein_coding	UQCC3	chromosome:C_jacchus3.2.1:11:1:130397257:1	118349778	118350633	D	ubiquinol-cytochrome c reductase complex assembly factor 3 [Source:HGNC Symbol;Acc:HGNC:34399]
ENSCJAG00000011784	KNOWN	protein_coding	ALDH3A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	77143477	77153295	R	Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}  [Source:UniProtKB/TrEMBL;Acc:F6YGX5]
ENSCJAG00000032082	NOVEL	pseudogene	ENSCJAG00000032082	chromosome:C_jacchus3.2.1:15:1:98464013:1	88982062	88982386	D	<no descrition>
ENSCJAG00000018615	KNOWN_BY_PROJECTION	protein_coding	CWH43	chromosome:C_jacchus3.2.1:3:1:190850796:1	141667966	141751410	R	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26133]
ENSCJAG00000035476	NOVEL	protein_coding	ENSCJAG00000035476	chromosome:C_jacchus3.2.1:15:1:98464013:1	88988127	88994855	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051405}  [Source:UniProtKB/TrEMBL;Acc:F6UC29]
ENSCJAG00000038096	NOVEL	pseudogene	ENSCJAG00000038096	chromosome:C_jacchus3.2.1:17:1:74750902:1	1608665	1610261	D	<no descrition>
ENSCJAG00000002110	NOVEL	pseudogene	ENSCJAG00000002110	chromosome:C_jacchus3.2.1:17:1:74750902:1	2544494	2544803	R	<no descrition>
ENSCJAG00000031211	KNOWN_BY_PROJECTION	protein_coding	NAALADL2	chromosome:C_jacchus3.2.1:17:1:74750902:1	2877555	3643480	R	N-acetylated alpha-linked acidic dipeptidase-like 2 [Source:HGNC Symbol;Acc:HGNC:23219]
ENSCJAG00000018751	KNOWN_BY_PROJECTION	protein_coding	UBXN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	118355627	118358265	R	UBX domain protein 1 [Source:HGNC Symbol;Acc:HGNC:18402]
ENSCJAG00000032339	NOVEL	protein_coding	ENSCJAG00000032339	chromosome:C_jacchus3.2.1:17:1:74750902:1	3675796	3676407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045111}  [Source:UniProtKB/TrEMBL;Acc:F6SLE9]
ENSCJAG00000003707	KNOWN	protein_coding	HEATR5B	chromosome:C_jacchus3.2.1:14:1:108792865:1	71198475	71311156	D	HEAT repeat-containing protein 5B {ECO:0000313|EMBL:JAB10832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006855}  [Source:UniProtKB/TrEMBL;Acc:F7CXW2]
ENSCJAG00000002112	NOVEL	protein_coding	ENSCJAG00000002112	chromosome:C_jacchus3.2.1:17:1:74750902:1	4501522	4502201	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044192}  [Source:UniProtKB/TrEMBL;Acc:F7FK73]
ENSCJAG00000002114	KNOWN	protein_coding	NLGN1	chromosome:C_jacchus3.2.1:17:1:74750902:1	4521441	4529179	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003808}  [Source:UniProtKB/TrEMBL;Acc:F7GZ61]
ENSCJAG00000016744	KNOWN	protein_coding	MORN4	chromosome:C_jacchus3.2.1:12:1:121768101:1	84686898	84701804	R	MORN repeat-containing protein 4 {ECO:0000313|EMBL:JAB07151.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030815}  [Source:UniProtKB/TrEMBL;Acc:F7C4R4]
ENSCJAG00000002119	KNOWN_BY_PROJECTION	protein_coding	SPATA16	chromosome:C_jacchus3.2.1:17:1:74750902:1	5653033	5910595	D	spermatogenesis associated 16 [Source:HGNC Symbol;Acc:HGNC:29935]
ENSCJAG00000014301	KNOWN	protein_coding	PMCH	chromosome:C_jacchus3.2.1:9:1:124281992:1	92292054	92293450	R	Pro-MCH preproprotein {ECO:0000313|EMBL:JAB15405.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026291}  [Source:UniProtKB/TrEMBL;Acc:F7INJ6]
ENSCJAG00000014307	KNOWN	protein_coding	IGF1	chromosome:C_jacchus3.2.1:9:1:124281992:1	92473116	92556971	R	Insulin-like growth factor 1 isoform 4 preproprotein {ECO:0000313|EMBL:JAB13715.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026346}  [Source:UniProtKB/TrEMBL;Acc:F7IBQ8]
ENSCJAG00000016772	KNOWN	protein_coding	AVPI1	chromosome:C_jacchus3.2.1:12:1:121768101:1	84749361	84760195	R	Arginine vasopressin-induced protein 1 {ECO:0000313|EMBL:JAB03709.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030859}  [Source:UniProtKB/TrEMBL;Acc:F7AMB4]
ENSCJAG00000016782	KNOWN_BY_PROJECTION	protein_coding	MARVELD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	84785938	84786544	D	MARVEL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28674]
ENSCJAG00000011832	KNOWN_BY_PROJECTION	protein_coding	ULK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	77188452	77292506	R	unc-51 like autophagy activating kinase 2 [Source:HGNC Symbol;Acc:HGNC:13480]
ENSCJAG00000005337	KNOWN_BY_PROJECTION	protein_coding	DNPH1	chromosome:C_jacchus3.2.1:4:1:171630274:1	44552605	44557328	R	2'-deoxynucleoside 5'-phosphate N-hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:21218]
ENSCJAG00000006541	KNOWN	protein_coding	PSMB7	chromosome:C_jacchus3.2.1:1:1:210400635:1	168176274	168237870	R	Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}  [Source:UniProtKB/TrEMBL;Acc:F7DRQ0]
ENSCJAG00000004843	KNOWN	protein_coding	BBX	chromosome:C_jacchus3.2.1:15:1:98464013:1	89135890	89420961	R	HMG box transcription factor BBX isoform 2 {ECO:0000313|EMBL:JAB28753.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044426}  [Source:UniProtKB/TrEMBL;Acc:F7DJ59]
ENSCJAG00000020860	NOVEL	protein_coding	ENSCJAG00000020860	chromosome:C_jacchus3.2.1:10:1:132174527:1	35611363	35617633	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038802}  [Source:UniProtKB/TrEMBL;Acc:F7I6S4]
ENSCJAG00000020861	KNOWN_BY_PROJECTION	protein_coding	C15orf52	chromosome:C_jacchus3.2.1:10:1:132174527:1	35627353	35633198	D	chromosome 15 open reading frame 52 [Source:HGNC Symbol;Acc:HGNC:33488]
ENSCJAG00000005343	KNOWN_BY_PROJECTION	protein_coding	TTBK1	chromosome:C_jacchus3.2.1:4:1:171630274:1	44573281	44623247	D	tau tubulin kinase 1 [Source:HGNC Symbol;Acc:HGNC:19140]
ENSCJAG00000020864	NOVEL	protein_coding	ENSCJAG00000020864	chromosome:C_jacchus3.2.1:10:1:132174527:1	35655583	35656819	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052361}  [Source:UniProtKB/TrEMBL;Acc:F7INR7]
ENSCJAG00000018747	KNOWN_BY_PROJECTION	protein_coding	LRRN4CL	chromosome:C_jacchus3.2.1:11:1:130397257:1	118372170	118374556	R	LRRN4 C-terminal like [Source:HGNC Symbol;Acc:HGNC:33724]
ENSCJAG00000018730	KNOWN_BY_PROJECTION	protein_coding	BSCL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	118375294	118392037	R	Berardinelli-Seip congenital lipodystrophy 2 (seipin) [Source:HGNC Symbol;Acc:HGNC:15832]
ENSCJAG00000018728	KNOWN	protein_coding	GNG3	chromosome:C_jacchus3.2.1:11:1:130397257:1	118392489	118394041	D	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F7I3K5]
ENSCJAG00000018703	KNOWN	protein_coding	TTC9C	chromosome:C_jacchus3.2.1:11:1:130397257:1	118413678	118428850	D	Tetratricopeptide repeat protein 9C {ECO:0000313|EMBL:JAB09586.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034750}  [Source:UniProtKB/TrEMBL;Acc:F7I606]
ENSCJAG00000018693	KNOWN_BY_PROJECTION	protein_coding	ZBTB3	chromosome:C_jacchus3.2.1:11:1:130397257:1	118438545	118441136	R	zinc finger and BTB domain containing 3 [Source:HGNC Symbol;Acc:HGNC:22918]
ENSCJAG00000020865	KNOWN_BY_PROJECTION	protein_coding	PLCB2	chromosome:C_jacchus3.2.1:10:1:132174527:1	35662008	35682289	D	phospholipase C, beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]
ENSCJAG00000018688	KNOWN	protein_coding	POLR2G	chromosome:C_jacchus3.2.1:11:1:130397257:1	118451512	118456760	D	DNA-directed RNA polymerase II subunit RPB7 {ECO:0000313|EMBL:JAB03814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034715}  [Source:UniProtKB/TrEMBL;Acc:F7ID17]
ENSCJAG00000016783	KNOWN_BY_PROJECTION	protein_coding	ZFYVE27	chromosome:C_jacchus3.2.1:12:1:121768101:1	84812721	84836945	D	zinc finger, FYVE domain containing 27 [Source:HGNC Symbol;Acc:HGNC:26559]
ENSCJAG00000006624	KNOWN_BY_PROJECTION	protein_coding	NR5A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	168311084	168323276	R	nuclear receptor subfamily 5, group A, member 1 [Source:HGNC Symbol;Acc:HGNC:7983]
ENSCJAG00000018684	KNOWN	protein_coding	TAF6L	chromosome:C_jacchus3.2.1:11:1:130397257:1	118461608	118482932	D	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L {ECO:0000313|EMBL:JAB04263.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034707}  [Source:UniProtKB/TrEMBL;Acc:F7IFE5]
ENSCJAG00000004804	KNOWN_BY_PROJECTION	protein_coding	CBLB	chromosome:C_jacchus3.2.1:15:1:98464013:1	91099914	91297742	D	Cbl proto-oncogene B, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:1542]
ENSCJAG00000002129	KNOWN_BY_PROJECTION	protein_coding	ECT2	chromosome:C_jacchus3.2.1:17:1:74750902:1	6015024	6105545	R	epithelial cell transforming 2 [Source:HGNC Symbol;Acc:HGNC:3155]
ENSCJAG00000006631	KNOWN_BY_PROJECTION	protein_coding	NR6A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	168339056	168583342	R	nuclear receptor subfamily 6, group A, member 1 [Source:HGNC Symbol;Acc:HGNC:7985]
ENSCJAG00000014328	KNOWN	protein_coding	PAH	chromosome:C_jacchus3.2.1:9:1:124281992:1	92885850	92962736	R	Phenylalanine-4-hydroxylase {ECO:0000313|EMBL:JAB27176.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026378}  [Source:UniProtKB/TrEMBL;Acc:F7I717]
ENSCJAG00000003643	KNOWN_BY_PROJECTION	protein_coding	STRN	chromosome:C_jacchus3.2.1:14:1:108792865:1	71330017	71454000	D	striatin, calmodulin binding protein [Source:HGNC Symbol;Acc:HGNC:11424]
ENSCJAG00000018683	KNOWN_BY_PROJECTION	protein_coding	TMEM179B	chromosome:C_jacchus3.2.1:11:1:130397257:1	118482993	118485634	D	transmembrane protein 179B [Source:HGNC Symbol;Acc:HGNC:33744]
ENSCJAG00000018681	KNOWN_BY_PROJECTION	protein_coding	TMEM223	chromosome:C_jacchus3.2.1:11:1:130397257:1	118485791	118487205	R	transmembrane protein 223 [Source:HGNC Symbol;Acc:HGNC:28464]
ENSCJAG00000018637	KNOWN	protein_coding	OCIAD2	chromosome:C_jacchus3.2.1:3:1:190850796:1	141842141	141862375	D	OCIA domain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB01792.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034616}  [Source:UniProtKB/TrEMBL;Acc:F7HTU2]
ENSCJAG00000006668	KNOWN_BY_PROJECTION	protein_coding	OLFML2A	chromosome:C_jacchus3.2.1:1:1:210400635:1	168596814	168624200	D	olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
ENSCJAG00000014345	KNOWN_BY_PROJECTION	protein_coding	ASCL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	93017653	93020449	D	achaete-scute family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:738]
ENSCJAG00000018643	NOVEL	protein_coding	ENSCJAG00000018643	chromosome:C_jacchus3.2.1:3:1:190850796:1	141848342	141849039	R	40S ribosomal protein S12 {ECO:0000256|RuleBase:RU000670}  [Source:UniProtKB/TrEMBL;Acc:F7IJ70]
ENSCJAG00000004708	KNOWN	protein_coding	ALCAM	chromosome:C_jacchus3.2.1:15:1:98464013:1	91367976	91579375	R	CD166 antigen isoform 1 {ECO:0000313|EMBL:JAB07568.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008726}  [Source:UniProtKB/TrEMBL;Acc:F7HMG0]
ENSCJAG00000014347	KNOWN_BY_PROJECTION	protein_coding	C12orf42	chromosome:C_jacchus3.2.1:9:1:124281992:1	93290376	93491314	R	chromosome 12 open reading frame 42 [Source:HGNC Symbol;Acc:HGNC:24729]
ENSCJAG00000005355	KNOWN_BY_PROJECTION	protein_coding	SLC22A7	chromosome:C_jacchus3.2.1:4:1:171630274:1	44637086	44645563	D	solute carrier family 22 (organic anion transporter), member 7 [Source:HGNC Symbol;Acc:HGNC:10971]
ENSCJAG00000011871	KNOWN	protein_coding	AKAP10	chromosome:C_jacchus3.2.1:5:1:159171411:1	77330758	77421987	R	A-kinase anchor protein 10, mitochondrial {ECO:0000313|EMBL:JAB08535.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021880}  [Source:UniProtKB/TrEMBL;Acc:F6QMG0]
ENSCJAG00000018644	KNOWN_BY_PROJECTION	protein_coding	OCIAD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	141878353	141907311	R	OCIA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16074]
ENSCJAG00000018635	KNOWN	protein_coding	NXF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	118487320	118503231	R	Nuclear RNA export factor 1 isoform 1 {ECO:0000313|EMBL:JAB04413.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034695}  [Source:UniProtKB/TrEMBL;Acc:F7IK65]
ENSCJAG00000011923	NOVEL	protein_coding	ENSCJAG00000011923	chromosome:C_jacchus3.2.1:5:1:159171411:1	77484771	77496162	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021889}  [Source:UniProtKB/TrEMBL;Acc:F6QM00]
ENSCJAG00000011930	KNOWN_BY_PROJECTION	protein_coding	ZNF624	chromosome:C_jacchus3.2.1:5:1:159171411:1	77515144	77546316	D	zinc finger protein 624 [Source:HGNC Symbol;Acc:HGNC:29254]
ENSCJAG00000011933	KNOWN_BY_PROJECTION	protein_coding	ZNF287	chromosome:C_jacchus3.2.1:5:1:159171411:1	77598969	77618693	D	zinc finger protein 287 [Source:HGNC Symbol;Acc:HGNC:13502]
ENSCJAG00000003620	KNOWN_BY_PROJECTION	protein_coding	VIT	chromosome:C_jacchus3.2.1:14:1:108792865:1	71482132	71604413	R	vitrin [Source:HGNC Symbol;Acc:HGNC:12697]
ENSCJAG00000004792	NOVEL	protein_coding	ENSCJAG00000004792	chromosome:C_jacchus3.2.1:15:1:98464013:1	91378104	91391829	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008746}  [Source:UniProtKB/TrEMBL;Acc:F7HMB5]
ENSCJAG00000033412	NOVEL	pseudogene	ENSCJAG00000033412	chromosome:C_jacchus3.2.1:15:1:98464013:1	93028183	93028819	D	<no descrition>
ENSCJAG00000011947	KNOWN_BY_PROJECTION	protein_coding	LRRC75A	chromosome:C_jacchus3.2.1:5:1:159171411:1	77690108	77739214	D	leucine rich repeat containing 75A [Source:HGNC Symbol;Acc:HGNC:32403]
ENSCJAG00000011963	NOVEL	pseudogene	ENSCJAG00000011963	chromosome:C_jacchus3.2.1:5:1:159171411:1	77743428	77743597	R	<no descrition>
ENSCJAG00000000461	KNOWN_BY_PROJECTION	protein_coding	ZPLD1	chromosome:C_jacchus3.2.1:15:1:98464013:1	94294416	94336489	R	zona pellucida-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27022]
ENSCJAG00000000464	NOVEL	pseudogene	ENSCJAG00000000464	chromosome:C_jacchus3.2.1:15:1:98464013:1	94760240	94760513	R	<no descrition>
ENSCJAG00000014363	KNOWN_BY_PROJECTION	protein_coding	STAB2	chromosome:C_jacchus3.2.1:9:1:124281992:1	93582067	93778713	D	stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
ENSCJAG00000011970	KNOWN_BY_PROJECTION	protein_coding	TRPV2	chromosome:C_jacchus3.2.1:5:1:159171411:1	77745237	77771233	R	transient receptor potential cation channel, subfamily V, member 2 [Source:HGNC Symbol;Acc:HGNC:18082]
ENSCJAG00000000465	KNOWN_BY_PROJECTION	protein_coding	NFKBIZ	chromosome:C_jacchus3.2.1:15:1:98464013:1	94894754	94905430	R	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta [Source:HGNC Symbol;Acc:HGNC:29805]
ENSCJAG00000005390	KNOWN_BY_PROJECTION	protein_coding	CRIP3	chromosome:C_jacchus3.2.1:4:1:171630274:1	44645498	44648769	R	cysteine-rich protein 3 [Source:HGNC Symbol;Acc:HGNC:17751]
ENSCJAG00000005420	KNOWN_BY_PROJECTION	protein_coding	ZNF318	chromosome:C_jacchus3.2.1:4:1:171630274:1	44684583	44710516	R	zinc finger protein 318 [Source:HGNC Symbol;Acc:HGNC:13578]
ENSCJAG00000000487	KNOWN_BY_PROJECTION	protein_coding	NXPE3	chromosome:C_jacchus3.2.1:15:1:98464013:1	94941589	94979935	R	neurexophilin and PC-esterase domain family, member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
ENSCJAG00000005436	NOVEL	pseudogene	ENSCJAG00000005436	chromosome:C_jacchus3.2.1:4:1:171630274:1	44708065	44708767	D	<no descrition>
ENSCJAG00000005440	NOVEL	pseudogene	ENSCJAG00000005440	chromosome:C_jacchus3.2.1:4:1:171630274:1	44745984	44747319	D	<no descrition>
ENSCJAG00000002194	KNOWN_BY_PROJECTION	protein_coding	NCEH1	chromosome:C_jacchus3.2.1:17:1:74750902:1	6147567	6208327	D	neutral cholesterol ester hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:29260]
ENSCJAG00000000492	NOVEL	protein_coding	ENSCJAG00000000492	chromosome:C_jacchus3.2.1:15:1:98464013:1	94976521	95018321	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000835}  [Source:UniProtKB/TrEMBL;Acc:F6PXV4]
ENSCJAG00000018667	NOVEL	pseudogene	ENSCJAG00000018667	chromosome:C_jacchus3.2.1:3:1:190850796:1	141930622	141932306	R	<no descrition>
ENSCJAG00000006695	KNOWN_BY_PROJECTION	protein_coding	WDR38	chromosome:C_jacchus3.2.1:1:1:210400635:1	168666972	168671767	D	WD repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:23745]
ENSCJAG00000000493	KNOWN_BY_PROJECTION	protein_coding	CEP97	chromosome:C_jacchus3.2.1:15:1:98464013:1	95003010	95036057	R	centrosomal protein 97kDa [Source:HGNC Symbol;Acc:HGNC:26244]
ENSCJAG00000012007	KNOWN	protein_coding	UBC	chromosome:C_jacchus3.2.1:5:1:159171411:1	77802572	77804197	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048788}  [Source:UniProtKB/TrEMBL;Acc:F6Q8N3]
ENSCJAG00000012011	KNOWN_BY_PROJECTION	protein_coding	CENPV	chromosome:C_jacchus3.2.1:5:1:159171411:1	77833168	77844782	D	centromere protein V [Source:HGNC Symbol;Acc:HGNC:29920]
ENSCJAG00000005446	KNOWN_BY_PROJECTION	protein_coding	ABCC10	chromosome:C_jacchus3.2.1:4:1:171630274:1	44773605	44795694	D	ATP-binding cassette, sub-family C (CFTR/MRP), member 10 [Source:HGNC Symbol;Acc:HGNC:52]
ENSCJAG00000000496	KNOWN_BY_PROJECTION	protein_coding	RPL24	chromosome:C_jacchus3.2.1:15:1:98464013:1	95066028	95072064	D	ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:10325]
ENSCJAG00000006724	KNOWN_BY_PROJECTION	protein_coding	RPL35	chromosome:C_jacchus3.2.1:1:1:210400635:1	168671765	168676525	R	ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
ENSCJAG00000002203	KNOWN	protein_coding	TNFSF10	chromosome:C_jacchus3.2.1:17:1:74750902:1	6304414	6321547	D	Tumor necrosis factor ligand superfamily member 10 isoform 1 {ECO:0000313|EMBL:JAB04670.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050927}  [Source:UniProtKB/TrEMBL;Acc:F6TYF2]
ENSCJAG00000000499	KNOWN_BY_PROJECTION	protein_coding	ZBTB11	chromosome:C_jacchus3.2.1:15:1:98464013:1	95075526	95108560	D	zinc finger and BTB domain containing 11 [Source:HGNC Symbol;Acc:HGNC:16740]
ENSCJAG00000006730	KNOWN	protein_coding	ARPC5L	chromosome:C_jacchus3.2.1:1:1:210400635:1	168680636	168689021	D	Actin-related protein 2/3 complex subunit 5 {ECO:0000256|RuleBase:RU004301}  [Source:UniProtKB/TrEMBL;Acc:F7EX37]
ENSCJAG00000012025	KNOWN_BY_PROJECTION	protein_coding	PIGL	chromosome:C_jacchus3.2.1:5:1:159171411:1	77856953	77966243	R	phosphatidylinositol glycan anchor biosynthesis, class L [Source:HGNC Symbol;Acc:HGNC:8966]
ENSCJAG00000000508	KNOWN	protein_coding	ENSCJAG00000000508	chromosome:C_jacchus3.2.1:15:1:98464013:1	95138982	95160729	R	PEST proteolytic signal-containing nuclear protein {ECO:0000313|EMBL:JAB07493.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000872}  [Source:UniProtKB/TrEMBL;Acc:F6U7V3]
ENSCJAG00000006745	KNOWN	protein_coding	GOLGA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	168691630	168756423	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012555}  [Source:UniProtKB/TrEMBL;Acc:F7GSP7]
ENSCJAG00000003610	KNOWN_BY_PROJECTION	protein_coding	FEZ2	chromosome:C_jacchus3.2.1:14:1:108792865:1	71701105	71750249	D	fasciculation and elongation protein zeta 2 (zygin II) [Source:HGNC Symbol;Acc:HGNC:3660]
ENSCJAG00000000514	KNOWN_BY_PROJECTION	protein_coding	TRMT10C	chromosome:C_jacchus3.2.1:15:1:98464013:1	95169046	95173694	R	tRNA methyltransferase 10 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26022]
ENSCJAG00000002211	KNOWN	protein_coding	GHSR	chromosome:C_jacchus3.2.1:17:1:74750902:1	6377391	6380700	D	Callithrix jacchus growth hormone secretagogue receptor (GHSR), mRNA. [Source:RefSeq mRNA;Acc:NM_001257223]
ENSCJAG00000003575	KNOWN_BY_PROJECTION	protein_coding	CRIM1	chromosome:C_jacchus3.2.1:14:1:108792865:1	71752253	71956848	R	cysteine rich transmembrane BMP regulator 1 (chordin-like) [Source:HGNC Symbol;Acc:HGNC:2359]
ENSCJAG00000006789	KNOWN_BY_PROJECTION	protein_coding	SCAI	chromosome:C_jacchus3.2.1:1:1:210400635:1	168769218	168962547	R	suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
ENSCJAG00000012051	KNOWN_BY_PROJECTION	protein_coding	NCOR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	77968740	78154641	D	nuclear receptor corepressor 1 [Source:HGNC Symbol;Acc:HGNC:7672]
ENSCJAG00000006822	NOVEL	protein_coding	ENSCJAG00000006822	chromosome:C_jacchus3.2.1:1:1:210400635:1	168821627	168822219	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012621}  [Source:UniProtKB/TrEMBL;Acc:F6QBC1]
ENSCJAG00000020881	KNOWN_BY_PROJECTION	protein_coding	ANKRD63	chromosome:C_jacchus3.2.1:10:1:132174527:1	35687764	35689067	D	ankyrin repeat domain 63 [Source:HGNC Symbol;Acc:HGNC:40027]
ENSCJAG00000018606	KNOWN	protein_coding	STX5	chromosome:C_jacchus3.2.1:11:1:130397257:1	118504601	118531713	R	Syntaxin-5 isoform 1 {ECO:0000313|EMBL:JAB24321.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034608}  [Source:UniProtKB/TrEMBL;Acc:F7HWM2]
ENSCJAG00000018669	KNOWN_BY_PROJECTION	protein_coding	FRYL	chromosome:C_jacchus3.2.1:3:1:190850796:1	141955354	142363134	D	FRY-like [Source:HGNC Symbol;Acc:HGNC:29127]
ENSCJAG00000000515	KNOWN	protein_coding	SENP7	chromosome:C_jacchus3.2.1:15:1:98464013:1	95288252	95441779	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050552}  [Source:UniProtKB/TrEMBL;Acc:F7EIL1]
ENSCJAG00000020882	KNOWN	protein_coding	PAK6	chromosome:C_jacchus3.2.1:10:1:132174527:1	35692964	35751184	R	Serine/threonine-protein kinase PAK 6 {ECO:0000313|EMBL:JAB15288.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038891}  [Source:UniProtKB/TrEMBL;Acc:F7HZL6]
ENSCJAG00000003574	NOVEL	protein_coding	ENSCJAG00000003574	chromosome:C_jacchus3.2.1:14:1:108792865:1	71997358	71998238	D	<no descrition>
ENSCJAG00000003525	KNOWN	protein_coding	FAM98A	chromosome:C_jacchus3.2.1:14:1:108792865:1	74719403	74735698	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006460}  [Source:UniProtKB/TrEMBL;Acc:F7GVX1]
ENSCJAG00000020909	NOVEL	protein_coding	ENSCJAG00000020909	chromosome:C_jacchus3.2.1:10:1:132174527:1	35716735	35717338	D	<no descrition>
ENSCJAG00000023202	NOVEL	pseudogene	ENSCJAG00000023202	chromosome:C_jacchus3.2.1:15:1:98464013:1	95330456	95330909	R	<no descrition>
ENSCJAG00000006827	KNOWN	protein_coding	PPP6C	chromosome:C_jacchus3.2.1:1:1:210400635:1	168967328	169015141	R	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F6U8X9]
ENSCJAG00000000522	KNOWN_BY_PROJECTION	protein_coding	IMPG2	chromosome:C_jacchus3.2.1:15:1:98464013:1	95445851	95581081	D	interphotoreceptor matrix proteoglycan 2 [Source:HGNC Symbol;Acc:HGNC:18362]
ENSCJAG00000002213	KNOWN_BY_PROJECTION	protein_coding	FNDC3B	chromosome:C_jacchus3.2.1:17:1:74750902:1	6420345	6797624	R	fibronectin type III domain containing 3B [Source:HGNC Symbol;Acc:HGNC:24670]
ENSCJAG00000016808	KNOWN_BY_PROJECTION	protein_coding	SFRP5	chromosome:C_jacchus3.2.1:12:1:121768101:1	84843422	84848876	R	secreted frizzled-related protein 5 [Source:HGNC Symbol;Acc:HGNC:10779]
ENSCJAG00000000532	NOVEL	protein_coding	ENSCJAG00000000532	chromosome:C_jacchus3.2.1:15:1:98464013:1	95478013	95478282	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000902}  [Source:UniProtKB/TrEMBL;Acc:F6SCD0]
ENSCJAG00000036373	KNOWN_BY_PROJECTION	protein_coding	BUB1B	chromosome:C_jacchus3.2.1:10:1:132174527:1	35747762	35818257	R	BUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]
ENSCJAG00000006849	KNOWN	protein_coding	RABEPK	chromosome:C_jacchus3.2.1:1:1:210400635:1	169023860	169055805	D	Rab9 effector protein with kelch motifs isoform a {ECO:0000313|EMBL:JAB35812.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050608}  [Source:UniProtKB/TrEMBL;Acc:F7H8K3]
ENSCJAG00000016817	KNOWN_BY_PROJECTION	protein_coding	GOLGA7B	chromosome:C_jacchus3.2.1:12:1:121768101:1	84940123	84946342	D	golgin A7 family, member B [Source:HGNC Symbol;Acc:HGNC:31668]
ENSCJAG00000002290	NOVEL	protein_coding	ENSCJAG00000002290	chromosome:C_jacchus3.2.1:17:1:74750902:1	6961615	6961989	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004114}  [Source:UniProtKB/TrEMBL;Acc:F7CMI1]
ENSCJAG00000002292	KNOWN_BY_PROJECTION	protein_coding	TMEM212	chromosome:C_jacchus3.2.1:17:1:74750902:1	7025341	7039175	R	transmembrane protein 212 [Source:HGNC Symbol;Acc:HGNC:34295]
ENSCJAG00000002294	NOVEL	pseudogene	ENSCJAG00000002294	chromosome:C_jacchus3.2.1:17:1:74750902:1	7091274	7091714	D	<no descrition>
ENSCJAG00000016821	KNOWN	protein_coding	CRTAC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	84945609	85108464	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030959}  [Source:UniProtKB/TrEMBL;Acc:F6W730]
ENSCJAG00000000533	KNOWN_BY_PROJECTION	protein_coding	ABI3BP	chromosome:C_jacchus3.2.1:15:1:98464013:1	95833712	96090667	D	ABI family, member 3 (NESH) binding protein [Source:HGNC Symbol;Acc:HGNC:17265]
ENSCJAG00000018581	KNOWN_BY_PROJECTION	protein_coding	WDR74	chromosome:C_jacchus3.2.1:11:1:130397257:1	118532529	118540056	R	WD repeat domain 74 [Source:HGNC Symbol;Acc:HGNC:25529]
ENSCJAG00000002296	KNOWN_BY_PROJECTION	protein_coding	PLD1	chromosome:C_jacchus3.2.1:17:1:74750902:1	7153063	7320026	D	phospholipase D1, phosphatidylcholine-specific [Source:HGNC Symbol;Acc:HGNC:9067]
ENSCJAG00000016839	KNOWN	protein_coding	R3HCC1L	chromosome:C_jacchus3.2.1:12:1:121768101:1	85262343	85332224	D	R3H and coiled-coil domain-containing protein 1-like isoform 2 {ECO:0000313|EMBL:JAB10714.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031050}  [Source:UniProtKB/TrEMBL;Acc:F7HYR0]
ENSCJAG00000003493	KNOWN_BY_PROJECTION	protein_coding	RASGRP3	chromosome:C_jacchus3.2.1:14:1:108792865:1	74772571	74903442	R	RAS guanyl releasing protein 3 (calcium and DAG-regulated) [Source:HGNC Symbol;Acc:HGNC:14545]
ENSCJAG00000006880	KNOWN	protein_coding	HSPA5	chromosome:C_jacchus3.2.1:1:1:210400635:1	169057756	169063254	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012786}  [Source:UniProtKB/TrEMBL;Acc:F6R5D6]
ENSCJAG00000000553	KNOWN	protein_coding	TFG	chromosome:C_jacchus3.2.1:15:1:98464013:1	96092106	96127640	R	Protein TFG isoform 1 {ECO:0000313|EMBL:JAB04398.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000961}  [Source:UniProtKB/TrEMBL;Acc:F6RQB8]
ENSCJAG00000014428	KNOWN_BY_PROJECTION	protein_coding	NT5DC3	chromosome:C_jacchus3.2.1:9:1:124281992:1	93784368	93855564	R	5'-nucleotidase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30826]
ENSCJAG00000000558	KNOWN_BY_PROJECTION	protein_coding	GPR128	chromosome:C_jacchus3.2.1:15:1:98464013:1	96139772	96221268	R	G protein-coupled receptor 128 [Source:HGNC Symbol;Acc:HGNC:19241]
ENSCJAG00000014455	KNOWN	protein_coding	HSP90B1	chromosome:C_jacchus3.2.1:9:1:124281992:1	93941377	93959330	D	Endoplasmin {ECO:0000313|EMBL:JAB25803.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026654}  [Source:UniProtKB/TrEMBL;Acc:F7HV23]
ENSCJAG00000018569	KNOWN_BY_PROJECTION	protein_coding	SLC3A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	118551190	118592676	D	solute carrier family 3 (amino acid transporter heavy chain), member 2 [Source:HGNC Symbol;Acc:HGNC:11026]
ENSCJAG00000000576	KNOWN_BY_PROJECTION	protein_coding	TMEM45A	chromosome:C_jacchus3.2.1:15:1:98464013:1	96279243	96324976	R	transmembrane protein 45A [Source:HGNC Symbol;Acc:HGNC:25480]
ENSCJAG00000000579	KNOWN_BY_PROJECTION	protein_coding	LNP1	chromosome:C_jacchus3.2.1:15:1:98464013:1	96393406	96441781	R	leukemia NUP98 fusion partner 1 [Source:HGNC Symbol;Acc:HGNC:28014]
ENSCJAG00000000584	KNOWN	protein_coding	TOMM70A	chromosome:C_jacchus3.2.1:15:1:98464013:1	96441594	96481268	D	Mitochondrial import receptor subunit TOM70 {ECO:0000313|EMBL:JAB03382.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001017}  [Source:UniProtKB/TrEMBL;Acc:F7BLU0]
ENSCJAG00000003410	KNOWN	protein_coding	LTBP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	74935214	75417945	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048081}  [Source:UniProtKB/TrEMBL;Acc:F7EYK1]
ENSCJAG00000002326	KNOWN	protein_coding	TNIK	chromosome:C_jacchus3.2.1:17:1:74750902:1	7455150	7884423	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004376}  [Source:UniProtKB/TrEMBL;Acc:F7B7I8]
ENSCJAG00000016875	KNOWN_BY_PROJECTION	protein_coding	LOXL4	chromosome:C_jacchus3.2.1:12:1:121768101:1	85334979	85354544	R	lysyl oxidase-like 4 [Source:HGNC Symbol;Acc:HGNC:17171]
ENSCJAG00000000590	KNOWN_BY_PROJECTION	protein_coding	NIT2	chromosome:C_jacchus3.2.1:15:1:98464013:1	96490014	96508601	R	nitrilase family, member 2 [Source:HGNC Symbol;Acc:HGNC:29878]
ENSCJAG00000016915	KNOWN	protein_coding	PYROXD2	chromosome:C_jacchus3.2.1:12:1:121768101:1	85468869	85504344	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031168}  [Source:UniProtKB/TrEMBL;Acc:F7IM90]
ENSCJAG00000006913	KNOWN	protein_coding	GAPVD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	169078499	169266221	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050387}  [Source:UniProtKB/TrEMBL;Acc:F7FBE1]
ENSCJAG00000000594	KNOWN	protein_coding	TBC1D23	chromosome:C_jacchus3.2.1:15:1:98464013:1	96517967	96579126	R	TBC1 domain family member 23 isoform 2 {ECO:0000313|EMBL:JAB08876.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001037}  [Source:UniProtKB/TrEMBL;Acc:F7B3B4]
ENSCJAG00000018777	KNOWN	protein_coding	SLAIN2	chromosome:C_jacchus3.2.1:3:1:190850796:1	142160583	142416147	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034884}  [Source:UniProtKB/TrEMBL;Acc:F7IMC2]
ENSCJAG00000018561	KNOWN	protein_coding	CHRM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	118616369	118630705	R	Muscarinic acetylcholine receptor M1 {ECO:0000313|EMBL:JAB18944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034450}  [Source:UniProtKB/TrEMBL;Acc:F7IPY9]
ENSCJAG00000014509	KNOWN_BY_PROJECTION	protein_coding	C12orf73	chromosome:C_jacchus3.2.1:9:1:124281992:1	93961821	93968761	R	chromosome 12 open reading frame 73 [Source:HGNC Symbol;Acc:HGNC:34450]
ENSCJAG00000018534	KNOWN_BY_PROJECTION	protein_coding	SLC22A6	chromosome:C_jacchus3.2.1:11:1:130397257:1	118685023	118692200	R	solute carrier family 22 (organic anion transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:10970]
ENSCJAG00000014510	KNOWN	protein_coding	TDG	chromosome:C_jacchus3.2.1:9:1:124281992:1	93979883	94002950	D	G/T mismatch-specific thymine DNA glycosylase {ECO:0000313|EMBL:JAB06196.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026748}  [Source:UniProtKB/TrEMBL;Acc:F7IIM0]
ENSCJAG00000000607	KNOWN_BY_PROJECTION	protein_coding	TMEM30C	chromosome:C_jacchus3.2.1:15:1:98464013:1	96622366	96654108	R	transmembrane protein 30C [Source:HGNC Symbol;Acc:HGNC:30443]
ENSCJAG00000000610	KNOWN_BY_PROJECTION	protein_coding	CMSS1	chromosome:C_jacchus3.2.1:15:1:98464013:1	96662071	96683964	R	cms1 ribosomal small subunit homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:28666]
ENSCJAG00000005485	KNOWN_BY_PROJECTION	protein_coding	DLK2	chromosome:C_jacchus3.2.1:4:1:171630274:1	44795623	44801366	R	delta-like 2 homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21113]
ENSCJAG00000018512	KNOWN_BY_PROJECTION	protein_coding	SLC22A10	chromosome:C_jacchus3.2.1:11:1:130397257:1	118701320	118869265	R	solute carrier family 22, member 10 [Source:HGNC Symbol;Acc:HGNC:18057]
ENSCJAG00000018797	NOVEL	protein_coding	ENSCJAG00000018797	chromosome:C_jacchus3.2.1:3:1:190850796:1	142247794	142251875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034950}  [Source:UniProtKB/TrEMBL;Acc:F7I5W7]
ENSCJAG00000000617	KNOWN_BY_PROJECTION	protein_coding	FILIP1L	chromosome:C_jacchus3.2.1:15:1:98464013:1	96726863	97028199	D	filamin A interacting protein 1-like [Source:HGNC Symbol;Acc:HGNC:24589]
ENSCJAG00000037173	NOVEL	pseudogene	ENSCJAG00000037173	chromosome:C_jacchus3.2.1:12:1:121768101:1	85468869	85471399	R	<no descrition>
ENSCJAG00000005508	KNOWN	protein_coding	TJAP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	44824214	44857593	D	Tight junction-associated protein 1 isoform a {ECO:0000313|EMBL:JAB46479.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010087}  [Source:UniProtKB/TrEMBL;Acc:F7ABU6]
ENSCJAG00000000616	NOVEL	protein_coding	ENSCJAG00000000616	chromosome:C_jacchus3.2.1:15:1:98464013:1	96920792	96923223	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001060}  [Source:UniProtKB/TrEMBL;Acc:F7AJN7]
ENSCJAG00000012193	KNOWN	protein_coding	TTC19	chromosome:C_jacchus3.2.1:5:1:159171411:1	78157845	78186131	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022381}  [Source:UniProtKB/TrEMBL;Acc:F6XLQ1]
ENSCJAG00000000632	KNOWN	protein_coding	COL8A1	chromosome:C_jacchus3.2.1:15:1:98464013:1	97072563	97225756	R	Collagen alpha-1(VIII) chain {ECO:0000313|EMBL:JAB02909.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001099}  [Source:UniProtKB/TrEMBL;Acc:F6ZJ54]
ENSCJAG00000016949	KNOWN_BY_PROJECTION	protein_coding	HPS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	85506685	85537450	R	Hermansky-Pudlak syndrome 1 [Source:HGNC Symbol;Acc:HGNC:5163]
ENSCJAG00000005532	KNOWN	protein_coding	LRRC73	chromosome:C_jacchus3.2.1:4:1:171630274:1	44858060	44861775	R	Leucine-rich repeat-containing protein 73 isoform 1 {ECO:0000313|EMBL:JAB03282.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010132}  [Source:UniProtKB/TrEMBL;Acc:F6YTC3]
ENSCJAG00000035353	NOVEL	pseudogene	ENSCJAG00000035353	chromosome:C_jacchus3.2.1:15:1:98464013:1	97902455	97902905	D	<no descrition>
ENSCJAG00000012208	KNOWN_BY_PROJECTION	protein_coding	ZSWIM7	chromosome:C_jacchus3.2.1:5:1:159171411:1	78188556	78205901	D	zinc finger, SWIM-type containing 7 [Source:HGNC Symbol;Acc:HGNC:26993]
ENSCJAG00000012216	KNOWN_BY_PROJECTION	protein_coding	ADORA2B	chromosome:C_jacchus3.2.1:5:1:159171411:1	78207868	78237938	R	adenosine A2b receptor [Source:HGNC Symbol;Acc:HGNC:264]
ENSCJAG00000012218	NOVEL	pseudogene	ENSCJAG00000012218	chromosome:C_jacchus3.2.1:5:1:159171411:1	78413321	78414095	D	<no descrition>
ENSCJAG00000000646	KNOWN_BY_PROJECTION	protein_coding	DCBLD2	chromosome:C_jacchus3.2.1:15:1:98464013:1	97985575	98093539	D	discoidin, CUB and LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24627]
ENSCJAG00000005563	KNOWN	protein_coding	YIPF3	chromosome:C_jacchus3.2.1:4:1:171630274:1	44863029	44866466	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010202}  [Source:UniProtKB/TrEMBL;Acc:F6VA99]
ENSCJAG00000012224	KNOWN_BY_PROJECTION	protein_coding	C17orf104	chromosome:C_jacchus3.2.1:5:1:159171411:1	78478715	78498755	D	chromosome 17 open reading frame 104 [Source:HGNC Symbol;Acc:HGNC:26670]
ENSCJAG00000012229	KNOWN	protein_coding	CCDC43	chromosome:C_jacchus3.2.1:5:1:159171411:1	78499097	78513508	R	Coiled-coil domain-containing protein 43 isoform 1 {ECO:0000313|EMBL:JAB01793.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022422}  [Source:UniProtKB/TrEMBL;Acc:F7HU86]
ENSCJAG00000018818	KNOWN	protein_coding	SLC10A4	chromosome:C_jacchus3.2.1:3:1:190850796:1	142252625	142258580	R	Sodium/bile acid cotransporter 4 {ECO:0000313|EMBL:JAB14790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034967}  [Source:UniProtKB/TrEMBL;Acc:F7I5S9]
ENSCJAG00000006963	KNOWN	protein_coding	MAPKAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	169273049	169535618	R	Target of rapamycin complex 2 subunit MAPKAP1 isoform 5 {ECO:0000313|EMBL:JAB10444.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012963}  [Source:UniProtKB/TrEMBL;Acc:F6RDJ8]
ENSCJAG00000001043	NOVEL	pseudogene	ENSCJAG00000001043	chromosome:C_jacchus3.2.1:5:1:159171411:1	78514218	78514423	D	<no descrition>
ENSCJAG00000018849	KNOWN_BY_PROJECTION	protein_coding	TEC	chromosome:C_jacchus3.2.1:3:1:190850796:1	142504670	142649047	D	tec protein tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11719]
ENSCJAG00000000658	KNOWN_BY_PROJECTION	protein_coding	ST3GAL6	chromosome:C_jacchus3.2.1:15:1:98464013:1	98096819	98162503	R	ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:18080]
ENSCJAG00000012241	KNOWN_BY_PROJECTION	protein_coding	DBF4B	chromosome:C_jacchus3.2.1:5:1:159171411:1	78529722	78562713	D	DBF4 zinc finger B [Source:HGNC Symbol;Acc:HGNC:17883]
ENSCJAG00000020911	KNOWN	protein_coding	BMF	chromosome:C_jacchus3.2.1:10:1:132174527:1	35867350	35882160	D	Bcl-2-modifying factor isoform bmf-1 {ECO:0000313|EMBL:JAB06385.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038900}  [Source:UniProtKB/TrEMBL;Acc:F7HPK0]
ENSCJAG00000020912	KNOWN_BY_PROJECTION	protein_coding	SRP14	chromosome:C_jacchus3.2.1:10:1:132174527:1	35940222	35943387	D	signal recognition particle 14kDa (homologous Alu RNA binding protein) [Source:HGNC Symbol;Acc:HGNC:11299]
ENSCJAG00000012269	NOVEL	pseudogene	ENSCJAG00000012269	chromosome:C_jacchus3.2.1:5:1:159171411:1	78560456	78561035	D	<no descrition>
ENSCJAG00000000664	KNOWN	protein_coding	CPOX	chromosome:C_jacchus3.2.1:15:1:98464013:1	98312589	98325016	D	Coproporphyrinogen-III oxidase, mitochondrial {ECO:0000313|EMBL:JAB06621.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001141}  [Source:UniProtKB/TrEMBL;Acc:F6VJV7]
ENSCJAG00000012274	KNOWN_BY_PROJECTION	protein_coding	ADAM11	chromosome:C_jacchus3.2.1:5:1:159171411:1	78569383	78592072	D	ADAM metallopeptidase domain 11 [Source:HGNC Symbol;Acc:HGNC:189]
ENSCJAG00000003388	KNOWN_BY_PROJECTION	protein_coding	TTC27	chromosome:C_jacchus3.2.1:14:1:108792865:1	75557195	75734339	R	tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
ENSCJAG00000021319	NOVEL	protein_coding	ENSCJAG00000021319	chromosome:C_jacchus3.2.1:11:1:130397257:1	118801362	118819580	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034380}  [Source:UniProtKB/TrEMBL;Acc:F6WYW3]
ENSCJAG00000018530	KNOWN_BY_PROJECTION	protein_coding	CEBPA	chromosome:C_jacchus3.2.1:11:1:130397257:1	118804269	118806792	R	CCAAT/enhancer binding protein (C/EBP), alpha [Source:HGNC Symbol;Acc:HGNC:1833]
ENSCJAG00000014542	KNOWN_BY_PROJECTION	protein_coding	GLT8D2	chromosome:C_jacchus3.2.1:9:1:124281992:1	94003062	94070780	R	glycosyltransferase 8 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24890]
ENSCJAG00000018509	KNOWN_BY_PROJECTION	protein_coding	HRASLS5	chromosome:C_jacchus3.2.1:11:1:130397257:1	118915241	118941166	R	HRAS-like suppressor family, member 5 [Source:HGNC Symbol;Acc:HGNC:24978]
ENSCJAG00000000667	KNOWN	protein_coding	CLDND1	chromosome:C_jacchus3.2.1:15:1:98464013:1	98383148	98391148	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001153}  [Source:UniProtKB/TrEMBL;Acc:F6VJ28]
ENSCJAG00000020915	KNOWN_BY_PROJECTION	protein_coding	EIF2AK4	chromosome:C_jacchus3.2.1:10:1:132174527:1	35944298	36072668	R	eukaryotic translation initiation factor 2 alpha kinase 4 [Source:HGNC Symbol;Acc:HGNC:19687]
ENSCJAG00000018502	NOVEL	pseudogene	ENSCJAG00000018502	chromosome:C_jacchus3.2.1:11:1:130397257:1	118930050	118932096	R	<no descrition>
ENSCJAG00000016974	KNOWN	protein_coding	HPSE2	chromosome:C_jacchus3.2.1:12:1:121768101:1	85549223	85870644	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031232}  [Source:UniProtKB/TrEMBL;Acc:F7ICT1]
ENSCJAG00000006991	NOVEL	pseudogene	ENSCJAG00000006991	chromosome:C_jacchus3.2.1:15:1:98464013:1	98405540	98406630	R	<no descrition>
ENSCJAG00000018504	KNOWN_BY_PROJECTION	protein_coding	LGALS12	chromosome:C_jacchus3.2.1:11:1:130397257:1	118946579	118958487	D	lectin, galactoside-binding, soluble, 12 [Source:HGNC Symbol;Acc:HGNC:15788]
ENSCJAG00000012340	NOVEL	protein_coding	ENSCJAG00000012340	chromosome:C_jacchus3.2.1:5:1:159171411:1	78621170	78622617	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022590}  [Source:UniProtKB/TrEMBL;Acc:F7I3T0]
ENSCJAG00000012341	NOVEL	pseudogene	ENSCJAG00000012341	chromosome:C_jacchus3.2.1:5:1:159171411:1	78623934	78624366	R	<no descrition>
ENSCJAG00000006993	NOVEL	protein_coding	ENSCJAG00000006993	chromosome:C_jacchus3.2.1:15:1:98464013:1	98448168	98450847	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HUI9]
ENSCJAG00000018872	KNOWN_BY_PROJECTION	protein_coding	TXK	chromosome:C_jacchus3.2.1:3:1:190850796:1	142650549	142718924	D	TXK tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:12434]
ENSCJAG00000012343	KNOWN_BY_PROJECTION	protein_coding	HIGD1B	chromosome:C_jacchus3.2.1:5:1:159171411:1	78671912	78674003	D	HIG1 hypoxia inducible domain family, member 1B [Source:HGNC Symbol;Acc:HGNC:24318]
ENSCJAG00000018491	KNOWN_BY_PROJECTION	protein_coding	RARRES3	chromosome:C_jacchus3.2.1:11:1:130397257:1	118989620	118997039	D	retinoic acid receptor responder (tazarotene induced) 3 [Source:HGNC Symbol;Acc:HGNC:9869]
ENSCJAG00000007606	NOVEL	protein_coding	ENSCJAG00000007606	scaffold:C_jacchus3.2.1:ACFV01181502.1:1:17886:1	3160	5784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014104}  [Source:UniProtKB/TrEMBL;Acc:H9KWE4]
ENSCJAG00000012091	NOVEL	pseudogene	ENSCJAG00000012091	scaffold:C_jacchus3.2.1:ACFV01186094.1:1:10594:1	5501	5763	D	<no descrition>
ENSCJAG00000035440	NOVEL	protein_coding	ENSCJAG00000035440	chromosome:C_jacchus3.2.1:14:1:108792865:1	75725948	75726565	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048535}  [Source:UniProtKB/TrEMBL;Acc:F7FNB2]
ENSCJAG00000018481	KNOWN_BY_PROJECTION	protein_coding	HRASLS2	chromosome:C_jacchus3.2.1:11:1:130397257:1	119002729	119020243	R	HRAS-like suppressor 2 [Source:HGNC Symbol;Acc:HGNC:17824]
ENSCJAG00000016984	NOVEL	protein_coding	ENSCJAG00000016984	chromosome:C_jacchus3.2.1:12:1:121768101:1	85636699	85637964	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048562}  [Source:UniProtKB/TrEMBL;Acc:F7F8P9]
ENSCJAG00000015271	NOVEL	protein_coding	ENSCJAG00000015271	scaffold:C_jacchus3.2.1:ACFV01179279.1:1:17518:1	15312	15798	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028128}  [Source:UniProtKB/TrEMBL;Acc:H9KX44]
ENSCJAG00000031245	NOVEL	protein_coding	ENSCJAG00000031245	chromosome:C_jacchus3.2.1:12:1:121768101:1	86190676	86191398	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042304}  [Source:UniProtKB/TrEMBL;Acc:F6XID0]
ENSCJAG00000018470	KNOWN	protein_coding	PLA2G16	chromosome:C_jacchus3.2.1:11:1:130397257:1	119032213	119087816	R	Group XVI phospholipase A1/A2 {ECO:0000313|EMBL:JAB10339.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034256}  [Source:UniProtKB/TrEMBL;Acc:F7BTS4]
ENSCJAG00000017574	NOVEL	protein_coding	ENSCJAG00000017574	scaffold:C_jacchus3.2.1:ACFV01180405.1:1:19366:1	7631	11378	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043922}  [Source:UniProtKB/TrEMBL;Acc:H9KY19]
ENSCJAG00000007636	NOVEL	protein_coding	ENSCJAG00000007636	scaffold:C_jacchus3.2.1:ACFV01183000.1:1:16628:1	1609	4397	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014152}  [Source:UniProtKB/TrEMBL;Acc:H9KWE9]
ENSCJAG00000032109	NOVEL	protein_coding	ENSCJAG00000032109	scaffold:C_jacchus3.2.1:GL286382.1:1:23335:1	11572	18109	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014158}  [Source:UniProtKB/TrEMBL;Acc:H9KWF2]
ENSCJAG00000003301	KNOWN	protein_coding	BIRC6	chromosome:C_jacchus3.2.1:14:1:108792865:1	75747354	76002922	R	Baculoviral IAP repeat-containing protein 6 {ECO:0000313|EMBL:JAB49016.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006137}  [Source:UniProtKB/TrEMBL;Acc:F7ESH1]
ENSCJAG00000018444	KNOWN	protein_coding	ATL3	chromosome:C_jacchus3.2.1:11:1:130397257:1	119098977	119149657	R	Atlastin-3 {ECO:0000313|EMBL:JAB05561.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034224}  [Source:UniProtKB/TrEMBL;Acc:F7CP88]
ENSCJAG00000016989	KNOWN	protein_coding	CNNM1	chromosome:C_jacchus3.2.1:12:1:121768101:1	86583912	86661882	D	Metal transporter CNNM1 {ECO:0000313|EMBL:JAB17343.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031303}  [Source:UniProtKB/TrEMBL;Acc:F7I103]
ENSCJAG00000018855	KNOWN	protein_coding	USP22	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1201343	1219896	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:H9KXG6]
ENSCJAG00000032970	NOVEL	protein_coding	ENSCJAG00000032970	chromosome:C_jacchus3.2.1:1:1:210400635:1	169423063	169423994	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045537}  [Source:UniProtKB/TrEMBL;Acc:F6T4N9]
ENSCJAG00000009192	KNOWN_BY_PROJECTION	protein_coding	PDE1C	chromosome:C_jacchus3.2.1:8:1:128169293:1	23955	365181	R	phosphodiesterase 1C, calmodulin-dependent 70kDa [Source:HGNC Symbol;Acc:HGNC:8776]
ENSCJAG00000014569	KNOWN	protein_coding	HCFC2	chromosome:C_jacchus3.2.1:9:1:124281992:1	94071055	94109523	D	Host cell factor 2 {ECO:0000313|EMBL:JAB06454.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026889}  [Source:UniProtKB/TrEMBL;Acc:F7HZP7]
ENSCJAG00000007020	KNOWN	protein_coding	PBX3	chromosome:C_jacchus3.2.1:1:1:210400635:1	169576123	169846275	D	Pre-B-cell leukemia transcription factor 3 isoform 1 {ECO:0000313|EMBL:JAB06477.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013086}  [Source:UniProtKB/TrEMBL;Acc:F6Z197]
ENSCJAG00000009185	NOVEL	protein_coding	ENSCJAG00000009185	chromosome:C_jacchus3.2.1:8:1:128169293:1	752661	755766	R	<no descrition>
ENSCJAG00000005594	KNOWN_BY_PROJECTION	protein_coding	POLR1C	chromosome:C_jacchus3.2.1:4:1:171630274:1	44867600	44872405	D	polymerase (RNA) I polypeptide C, 30kDa [Source:HGNC Symbol;Acc:HGNC:20194]
ENSCJAG00000012349	KNOWN	protein_coding	EFTUD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	78673818	78726868	R	116 kDa U5 small nuclear ribonucleoprotein component isoform a {ECO:0000313|EMBL:JAB05684.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022955}  [Source:UniProtKB/TrEMBL;Acc:F7IAM1]
ENSCJAG00000009074	KNOWN	protein_coding	AVL9	chromosome:C_jacchus3.2.1:8:1:128169293:1	761764	841400	D	Late secretory pathway protein AVL9 homolog {ECO:0000313|EMBL:JAB09081.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016741}  [Source:UniProtKB/TrEMBL;Acc:F7B4A5]
ENSCJAG00000036789	NOVEL	protein_coding	ENSCJAG00000036789	chromosome:C_jacchus3.2.1:11:1:130397257:1	119113808	119131316	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052299}  [Source:UniProtKB/TrEMBL;Acc:F7IGS6]
ENSCJAG00000009166	KNOWN	protein_coding	KBTBD2	chromosome:C_jacchus3.2.1:8:1:128169293:1	902948	916695	R	Kelch repeat and BTB domain-containing protein 2 {ECO:0000313|EMBL:JAB06659.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016815}  [Source:UniProtKB/TrEMBL;Acc:F6YK77]
ENSCJAG00000018833	KNOWN	protein_coding	NIPAL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	142743824	142768296	R	Magnesium transporter NIPA3 {ECO:0000313|EMBL:JAB05643.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034996}  [Source:UniProtKB/TrEMBL;Acc:F7I3E2]
ENSCJAG00000007059	KNOWN_BY_PROJECTION	protein_coding	MVB12B	chromosome:C_jacchus3.2.1:1:1:210400635:1	170196997	170382353	D	multivesicular body subunit 12B [Source:HGNC Symbol;Acc:HGNC:23368]
ENSCJAG00000009164	KNOWN_BY_PROJECTION	protein_coding	PTPN5	chromosome:C_jacchus3.2.1:8:1:128169293:1	965267	971275	R	protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) [Source:HGNC Symbol;Acc:HGNC:9657]
ENSCJAG00000018878	KNOWN_BY_PROJECTION	protein_coding	CNGA1	chromosome:C_jacchus3.2.1:3:1:190850796:1	142800003	142823270	D	cyclic nucleotide gated channel alpha 1 [Source:HGNC Symbol;Acc:HGNC:2148]
ENSCJAG00000035927	NOVEL	protein_coding	ENSCJAG00000035927	chromosome:C_jacchus3.2.1:11:1:130397257:1	119129969	119133750	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052475}  [Source:UniProtKB/TrEMBL;Acc:F7I037]
ENSCJAG00000033462	KNOWN_BY_PROJECTION	protein_coding	RP9	chromosome:C_jacchus3.2.1:8:1:128169293:1	982773	1172001	R	retinitis pigmentosa 9 (autosomal dominant) [Source:HGNC Symbol;Acc:HGNC:10288]
ENSCJAG00000018893	KNOWN	protein_coding	NFXL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	142839767	142907972	D	NF-X1-type zinc finger protein NFXL1 {ECO:0000313|EMBL:JAB07347.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035157}  [Source:UniProtKB/TrEMBL;Acc:F7HUR4]
ENSCJAG00000009141	KNOWN	protein_coding	FKBP9	chromosome:C_jacchus3.2.1:8:1:128169293:1	1021931	1078204	D	Peptidyl-prolyl cis-trans isomerase FKBP9 {ECO:0000313|EMBL:JAB10264.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016777}  [Source:UniProtKB/TrEMBL;Acc:F7A436]
ENSCJAG00000018422	KNOWN	protein_coding	RTN3	chromosome:C_jacchus3.2.1:11:1:130397257:1	119159048	119268666	D	Reticulon {ECO:0000256|RuleBase:RU210713}  [Source:UniProtKB/TrEMBL;Acc:F6WF07]
ENSCJAG00000002414	KNOWN_BY_PROJECTION	protein_coding	SLC2A2	chromosome:C_jacchus3.2.1:17:1:74750902:1	7933497	7965482	D	solute carrier family 2 (facilitated glucose transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11006]
ENSCJAG00000017037	KNOWN	protein_coding	GOT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	86665858	86689819	R	Aspartate aminotransferase {ECO:0000256|RuleBase:RU000480}  [Source:UniProtKB/TrEMBL;Acc:F7GSG3]
ENSCJAG00000002422	KNOWN	protein_coding	EIF5A2	chromosome:C_jacchus3.2.1:17:1:74750902:1	8029966	8045198	D	Eukaryotic translation initiation factor 5A-2 {ECO:0000313|EMBL:JAB05259.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004408}  [Source:UniProtKB/TrEMBL;Acc:F6YNW2]
ENSCJAG00000009035	KNOWN	protein_coding	NT5C3A	chromosome:C_jacchus3.2.1:8:1:128169293:1	1086917	1131225	R	Cytosolic 5'-nucleotidase 3 isoform 1 {ECO:0000313|EMBL:JAB01995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016617}  [Source:UniProtKB/TrEMBL;Acc:F6Y2I5]
ENSCJAG00000007071	KNOWN_BY_PROJECTION	protein_coding	LMX1B	chromosome:C_jacchus3.2.1:1:1:210400635:1	170354462	170577614	D	LIM homeobox transcription factor 1, beta [Source:HGNC Symbol;Acc:HGNC:6654]
ENSCJAG00000002427	KNOWN	protein_coding	RPL22L1	chromosome:C_jacchus3.2.1:17:1:74750902:1	8077176	8081222	D	60S ribosomal protein L22-like 1 {ECO:0000313|EMBL:JAB01830.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004432}  [Source:UniProtKB/TrEMBL;Acc:F6YN99]
ENSCJAG00000005612	KNOWN	protein_coding	XPO5	chromosome:C_jacchus3.2.1:4:1:171630274:1	44873545	44919614	R	Exportin-5 {ECO:0000313|EMBL:JAB02202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010569}  [Source:UniProtKB/TrEMBL;Acc:F7ID55]
ENSCJAG00000005535	NOVEL	pseudogene	ENSCJAG00000005535	chromosome:C_jacchus3.2.1:17:1:74750902:1	8215593	8216264	R	<no descrition>
ENSCJAG00000002448	NOVEL	pseudogene	ENSCJAG00000002448	chromosome:C_jacchus3.2.1:17:1:74750902:1	8279678	8280095	D	<no descrition>
ENSCJAG00000014610	KNOWN	protein_coding	NFYB	chromosome:C_jacchus3.2.1:9:1:124281992:1	94121673	94143610	R	Nuclear transcription factor Y subunit beta {ECO:0000313|EMBL:JAB03160.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026928}  [Source:UniProtKB/TrEMBL;Acc:F7HPL2]
ENSCJAG00000017939	KNOWN	protein_coding	ZBTB43	chromosome:C_jacchus3.2.1:1:1:210400635:1	170665853	170694683	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033116}; Zinc finger and BTB domain-containing protein 43 {ECO:0000313|EMBL:JAB09208.1}  [Source:UniProtKB/TrEMBL;Acc:F6SX60]
ENSCJAG00000002449	NOVEL	protein_coding	ENSCJAG00000002449	chromosome:C_jacchus3.2.1:17:1:74750902:1	8280513	8281819	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004460}  [Source:UniProtKB/TrEMBL;Acc:F6XFA5]
ENSCJAG00000009162	NOVEL	protein_coding	ENSCJAG00000009162	chromosome:C_jacchus3.2.1:8:1:128169293:1	1149991	1150263	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041974}  [Source:UniProtKB/TrEMBL;Acc:F7G4Y7]
ENSCJAG00000012558	NOVEL	protein_coding	ENSCJAG00000012558	chromosome:C_jacchus3.2.1:5:1:159171411:1	78727013	78732913	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022981}  [Source:UniProtKB/TrEMBL;Acc:F7I5U8]
ENSCJAG00000002451	KNOWN	protein_coding	SLC7A14	chromosome:C_jacchus3.2.1:17:1:74750902:1	8348884	8469846	D	Putative cationic amino acid transporter {ECO:0000313|EMBL:JAB19507.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004488}  [Source:UniProtKB/TrEMBL;Acc:F6W919]
ENSCJAG00000017946	KNOWN_BY_PROJECTION	protein_coding	RALGPS1	chromosome:C_jacchus3.2.1:1:1:210400635:1	170781998	171118909	D	Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
ENSCJAG00000012563	KNOWN_BY_PROJECTION	protein_coding	GFAP	chromosome:C_jacchus3.2.1:5:1:159171411:1	78735181	78744321	R	glial fibrillary acidic protein [Source:HGNC Symbol;Acc:HGNC:4235]
ENSCJAG00000018936	KNOWN_BY_PROJECTION	protein_coding	CORIN	chromosome:C_jacchus3.2.1:3:1:190850796:1	142915279	143178226	D	corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
ENSCJAG00000002437	KNOWN	protein_coding	CLDN11	chromosome:C_jacchus3.2.1:17:1:74750902:1	8502065	8519130	R	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:F6Y431]
ENSCJAG00000018326	KNOWN_BY_PROJECTION	protein_coding	C11orf95	chromosome:C_jacchus3.2.1:11:1:130397257:1	119273296	119431767	R	chromosome 11 open reading frame 95 [Source:HGNC Symbol;Acc:HGNC:28449]
ENSCJAG00000017978	KNOWN	protein_coding	ANGPTL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	170976165	171011231	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033195}  [Source:UniProtKB/TrEMBL;Acc:F6RZ87]
ENSCJAG00000012595	KNOWN_BY_PROJECTION	protein_coding	KIF18B	chromosome:C_jacchus3.2.1:5:1:159171411:1	78754910	78777103	R	kinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]
ENSCJAG00000014635	KNOWN	protein_coding	TXNRD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	94231113	94356055	D	Callithrix jacchus thioredoxin reductase 1 (TXNRD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001256419]
ENSCJAG00000002466	NOVEL	protein_coding	ENSCJAG00000002466	chromosome:C_jacchus3.2.1:17:1:74750902:1	8524703	8531099	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004495}  [Source:UniProtKB/TrEMBL;Acc:F6W802]
ENSCJAG00000033276	NOVEL	pseudogene	ENSCJAG00000033276	chromosome:C_jacchus3.2.1:17:1:74750902:1	8541965	8542656	D	<no descrition>
ENSCJAG00000003292	KNOWN	protein_coding	YIPF4	chromosome:C_jacchus3.2.1:14:1:108792865:1	76057980	76081240	R	Protein YIPF4 {ECO:0000313|EMBL:JAB02487.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005993}  [Source:UniProtKB/TrEMBL;Acc:F7I7C9]
ENSCJAG00000002470	KNOWN_BY_PROJECTION	protein_coding	PRKCI	chromosome:C_jacchus3.2.1:17:1:74750902:1	8606611	8696544	R	protein kinase C, iota [Source:HGNC Symbol;Acc:HGNC:9404]
ENSCJAG00000017049	KNOWN_BY_PROJECTION	protein_coding	NKX2-3	chromosome:C_jacchus3.2.1:12:1:121768101:1	86789027	86791158	D	NK2 homeobox 3 [Source:HGNC Symbol;Acc:HGNC:7836]
ENSCJAG00000017050	KNOWN_BY_PROJECTION	protein_coding	SLC25A28	chromosome:C_jacchus3.2.1:12:1:121768101:1	86883833	86893951	R	solute carrier family 25 (mitochondrial iron transporter), member 28 [Source:HGNC Symbol;Acc:HGNC:23472]
ENSCJAG00000009008	KNOWN	protein_coding	BBS9	chromosome:C_jacchus3.2.1:8:1:128169293:1	1194800	1672801	D	Protein PTHB1 isoform 2 {ECO:0000313|EMBL:JAB24294.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016520}  [Source:UniProtKB/TrEMBL;Acc:F7C4T0]
ENSCJAG00000003273	KNOWN	protein_coding	SLC30A6	chromosome:C_jacchus3.2.1:14:1:108792865:1	76124003	76177378	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007060}; Zinc transporter 6 isoform 2 {ECO:0000313|EMBL:JAB12147.1}  [Source:UniProtKB/TrEMBL;Acc:F6U3S8]
ENSCJAG00000017982	KNOWN_BY_PROJECTION	protein_coding	GARNL3	chromosome:C_jacchus3.2.1:1:1:210400635:1	171167701	171317343	D	GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
ENSCJAG00000012638	KNOWN_BY_PROJECTION	protein_coding	C1QL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	78799597	78800196	R	complement component 1, q subcomponent-like 1 [Source:HGNC Symbol;Acc:HGNC:24182]
ENSCJAG00000012641	KNOWN	protein_coding	DCAKD	chromosome:C_jacchus3.2.1:5:1:159171411:1	78863348	78891096	R	Dephospho-CoA kinase A  [Source:UniProtKB/TrEMBL;Acc:F7HZF9]
ENSCJAG00000003286	NOVEL	pseudogene	ENSCJAG00000003286	chromosome:C_jacchus3.2.1:14:1:108792865:1	76130682	76131759	R	<no descrition>
ENSCJAG00000017079	KNOWN	protein_coding	ENTPD7	chromosome:C_jacchus3.2.1:12:1:121768101:1	86925555	86971982	D	Ectonucleoside triphosphate diphosphohydrolase 7 {ECO:0000313|EMBL:JAB03276.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031428}  [Source:UniProtKB/TrEMBL;Acc:F7IHC4]
ENSCJAG00000012649	KNOWN_BY_PROJECTION	protein_coding	NMT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	78902269	78944334	D	N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7857]
ENSCJAG00000003248	KNOWN	protein_coding	SPAST	chromosome:C_jacchus3.2.1:14:1:108792865:1	76188605	76260089	R	Spastin {ECO:0000256|HAMAP-Rule:MF_03021}  [Source:UniProtKB/TrEMBL;Acc:F7IED5]
ENSCJAG00000003245	NOVEL	protein_coding	ENSCJAG00000003245	chromosome:C_jacchus3.2.1:14:1:108792865:1	76283448	76285471	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005906}  [Source:UniProtKB/TrEMBL;Acc:F7IGS2]
ENSCJAG00000003240	KNOWN	protein_coding	DPY30	chromosome:C_jacchus3.2.1:14:1:108792865:1	76287725	76301314	D	Protein dpy-30 homolog {ECO:0000313|EMBL:JAB13395.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005899}  [Source:UniProtKB/TrEMBL;Acc:F7IR99]
ENSCJAG00000018950	KNOWN_BY_PROJECTION	protein_coding	ATP10D	chromosome:C_jacchus3.2.1:3:1:190850796:1	143182591	143285759	R	ATPase, class V, type 10D [Source:HGNC Symbol;Acc:HGNC:13549]
ENSCJAG00000003208	KNOWN	protein_coding	ENSCJAG00000003208	chromosome:C_jacchus3.2.1:14:1:108792865:1	76312819	76446426	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050712}  [Source:UniProtKB/TrEMBL;Acc:F7EHU4]
ENSCJAG00000002508	NOVEL	protein_coding	ENSCJAG00000002508	chromosome:C_jacchus3.2.1:17:1:74750902:1	8712590	8713863	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004561}  [Source:UniProtKB/TrEMBL;Acc:F7BP89]
ENSCJAG00000002513	NOVEL	protein_coding	ENSCJAG00000002513	chromosome:C_jacchus3.2.1:17:1:74750902:1	8715731	8716928	D	Ribosomal protein {ECO:0000256|RuleBase:RU000659}  [Source:UniProtKB/TrEMBL;Acc:F7BP56]
ENSCJAG00000014692	KNOWN_BY_PROJECTION	protein_coding	EID3	chromosome:C_jacchus3.2.1:9:1:124281992:1	94302135	94303457	D	EP300 interacting inhibitor of differentiation 3 [Source:HGNC Symbol;Acc:HGNC:32961]
ENSCJAG00000018418	KNOWN_BY_PROJECTION	protein_coding	C11orf84	chromosome:C_jacchus3.2.1:11:1:130397257:1	119321644	119337066	D	chromosome 11 open reading frame 84 [Source:HGNC Symbol;Acc:HGNC:25115]
ENSCJAG00000014697	KNOWN	protein_coding	CHST11	chromosome:C_jacchus3.2.1:9:1:124281992:1	94455973	94769157	D	Carbohydrate sulfotransferase 11 isoform 1 {ECO:0000313|EMBL:JAB20043.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027050}  [Source:UniProtKB/TrEMBL;Acc:F7F2M8]
ENSCJAG00000009030	NOVEL	protein_coding	ENSCJAG00000009030	chromosome:C_jacchus3.2.1:8:1:128169293:1	1295882	1297476	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016541}  [Source:UniProtKB/TrEMBL;Acc:F7BNW2]
ENSCJAG00000002233	NOVEL	pseudogene	ENSCJAG00000002233	chromosome:C_jacchus3.2.1:8:1:128169293:1	1791924	1792555	D	<no descrition>
ENSCJAG00000014708	KNOWN_BY_PROJECTION	protein_coding	SLC41A2	chromosome:C_jacchus3.2.1:9:1:124281992:1	94823607	94958357	R	solute carrier family 41 (magnesium transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:31045]
ENSCJAG00000020926	KNOWN	protein_coding	GPR176	chromosome:C_jacchus3.2.1:10:1:132174527:1	36087565	36238146	D	Putative G-protein coupled receptor 176 isoform 1 {ECO:0000313|EMBL:JAB17925.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038935}  [Source:UniProtKB/TrEMBL;Acc:F7IQI1]
ENSCJAG00000003238	NOVEL	pseudogene	ENSCJAG00000003238	chromosome:C_jacchus3.2.1:14:1:108792865:1	76336447	76337322	R	<no descrition>
ENSCJAG00000017107	KNOWN	protein_coding	COX15	chromosome:C_jacchus3.2.1:12:1:121768101:1	86980729	86999412	R	Cytochrome c oxidase assembly protein COX15 homolog isoform 1 {ECO:0000313|EMBL:JAB07432.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031456}  [Source:UniProtKB/TrEMBL;Acc:F7ICI5]
ENSCJAG00000020927	KNOWN_BY_PROJECTION	protein_coding	FSIP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	36279591	36465012	D	fibrous sheath interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:21674]
ENSCJAG00000012015	KNOWN	protein_coding	BMPER	chromosome:C_jacchus3.2.1:8:1:128169293:1	1976352	2233212	D	BMP-binding endothelial regulator protein {ECO:0000313|EMBL:JAB30474.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022097}  [Source:UniProtKB/TrEMBL;Acc:F6ZBZ8]
ENSCJAG00000002517	KNOWN	protein_coding	PHC3	chromosome:C_jacchus3.2.1:17:1:74750902:1	8738574	8825674	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004652}  [Source:UniProtKB/TrEMBL;Acc:F6Y1D8]
ENSCJAG00000003194	KNOWN	protein_coding	YPEL5	chromosome:C_jacchus3.2.1:14:1:108792865:1	76549825	76564001	D	Protein yippee-like {ECO:0000256|RuleBase:RU110713}  [Source:UniProtKB/TrEMBL;Acc:F7HRG9]
ENSCJAG00000018967	KNOWN	protein_coding	COMMD8	chromosome:C_jacchus3.2.1:3:1:190850796:1	143308672	143324525	D	COMM domain-containing protein 8 {ECO:0000313|EMBL:JAB37374.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035241}  [Source:UniProtKB/TrEMBL;Acc:F7IKK3]
ENSCJAG00000018341	KNOWN_BY_PROJECTION	protein_coding	MARK2	chromosome:C_jacchus3.2.1:11:1:130397257:1	119350791	119423111	D	MAP/microtubule affinity-regulating kinase 2 [Source:HGNC Symbol;Acc:HGNC:3332]
ENSCJAG00000036106	KNOWN	protein_coding	LBH	chromosome:C_jacchus3.2.1:14:1:108792865:1	76633061	76661192	D	Protein LBH {ECO:0000313|EMBL:JAB03441.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005825}  [Source:UniProtKB/TrEMBL;Acc:F7HVN1]
ENSCJAG00000014728	KNOWN	protein_coding	C9H12ORF45	chromosome:C_jacchus3.2.1:9:1:124281992:1	95016001	95027358	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027100}; Uncharacterized protein C12orf45 {ECO:0000313|EMBL:JAB02853.1}  [Source:UniProtKB/TrEMBL;Acc:F7DFW7]
ENSCJAG00000017121	KNOWN	protein_coding	CUTC	chromosome:C_jacchus3.2.1:12:1:121768101:1	86999551	87024607	D	Copper homeostasis protein cutC homolog {ECO:0000313|EMBL:JAB02108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031490}  [Source:UniProtKB/TrEMBL;Acc:F7I5K3]
ENSCJAG00000012703	KNOWN_BY_PROJECTION	protein_coding	PLCD3	chromosome:C_jacchus3.2.1:5:1:159171411:1	78949303	78971546	R	phospholipase C, delta 3 [Source:HGNC Symbol;Acc:HGNC:9061]
ENSCJAG00000002567	NOVEL	protein_coding	ENSCJAG00000002567	chromosome:C_jacchus3.2.1:17:1:74750902:1	8768415	8770209	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004665}  [Source:UniProtKB/TrEMBL;Acc:F6XD37]
ENSCJAG00000002573	KNOWN	protein_coding	GPR160	chromosome:C_jacchus3.2.1:17:1:74750902:1	8836363	8885080	R	Putative G-protein coupled receptor 160 {ECO:0000313|EMBL:JAB06021.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004673}  [Source:UniProtKB/TrEMBL;Acc:F6WRP2]
ENSCJAG00000020936	KNOWN_BY_PROJECTION	protein_coding	THBS1	chromosome:C_jacchus3.2.1:10:1:132174527:1	36467507	36485065	R	thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]
ENSCJAG00000014729	KNOWN	protein_coding	ALDH1L2	chromosome:C_jacchus3.2.1:9:1:124281992:1	95055845	95122987	R	10-formyltetrahydrofolate dehydrogenase {ECO:0000256|PIRNR:PIRNR036489}  [Source:UniProtKB/TrEMBL;Acc:F7H088]
ENSCJAG00000012118	KNOWN_BY_PROJECTION	protein_coding	NPSR1	chromosome:C_jacchus3.2.1:8:1:128169293:1	2655322	2840497	D	neuropeptide S receptor 1 [Source:HGNC Symbol;Acc:HGNC:23631]
ENSCJAG00000002576	KNOWN_BY_PROJECTION	protein_coding	SEC62	chromosome:C_jacchus3.2.1:17:1:74750902:1	8911443	8957056	R	SEC62 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:11846]
ENSCJAG00000018311	KNOWN	protein_coding	NAA40	chromosome:C_jacchus3.2.1:11:1:130397257:1	119463166	119482465	D	N-alpha-acetyltransferase 40 {ECO:0000313|EMBL:JAB09863.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033903}  [Source:UniProtKB/TrEMBL;Acc:F6PGS5]
ENSCJAG00000012730	NOVEL	pseudogene	ENSCJAG00000012730	chromosome:C_jacchus3.2.1:5:1:159171411:1	78967225	78967505	R	<no descrition>
ENSCJAG00000018300	NOVEL	protein_coding	ENSCJAG00000018300	chromosome:C_jacchus3.2.1:11:1:130397257:1	119501842	119506301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033887}  [Source:UniProtKB/TrEMBL;Acc:F6Q133]
ENSCJAG00000012732	KNOWN_BY_PROJECTION	protein_coding	ACBD4	chromosome:C_jacchus3.2.1:5:1:159171411:1	78975428	78983395	D	acyl-CoA binding domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23337]
ENSCJAG00000018043	NOVEL	protein_coding	ENSCJAG00000018043	chromosome:C_jacchus3.2.1:1:1:210400635:1	171216522	171217405	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052343}  [Source:UniProtKB/TrEMBL;Acc:F7HK73]
ENSCJAG00000018976	KNOWN	protein_coding	GABRB1	chromosome:C_jacchus3.2.1:3:1:190850796:1	143353350	143747167	R	Gamma-aminobutyric acid receptor subunit beta-1 {ECO:0000313|EMBL:JAB12876.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035278}  [Source:UniProtKB/TrEMBL;Acc:F7IFX5]
ENSCJAG00000022763	KNOWN	protein_coding	HEXIM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	78987415	78992378	D	Protein HEXIM1 {ECO:0000313|EMBL:JAB06714.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041346}  [Source:UniProtKB/TrEMBL;Acc:F7F2K3]
ENSCJAG00000003193	NOVEL	protein_coding	ENSCJAG00000003193	chromosome:C_jacchus3.2.1:14:1:108792865:1	76633572	76633934	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005827}  [Source:UniProtKB/TrEMBL;Acc:F7HVM9]
ENSCJAG00000003188	NOVEL	protein_coding	ENSCJAG00000003188	chromosome:C_jacchus3.2.1:14:1:108792865:1	76659216	76661186	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051868}  [Source:UniProtKB/TrEMBL;Acc:F6VYH9]
ENSCJAG00000018269	KNOWN	protein_coding	OTUB1	chromosome:C_jacchus3.2.1:11:1:130397257:1	119514597	119528632	D	Ubiquitin thioesterase OTUB1 {ECO:0000313|EMBL:JAB06925.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033857}  [Source:UniProtKB/TrEMBL;Acc:F6QN11]
ENSCJAG00000003179	KNOWN_BY_PROJECTION	protein_coding	LCLAT1	chromosome:C_jacchus3.2.1:14:1:108792865:1	76850908	77042711	D	lysocardiolipin acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26756]
ENSCJAG00000012745	KNOWN_BY_PROJECTION	protein_coding	FMNL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	79049889	79076319	D	formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
ENSCJAG00000012150	KNOWN_BY_PROJECTION	protein_coding	DPY19L1	chromosome:C_jacchus3.2.1:8:1:128169293:1	2910306	3024128	R	dpy-19-like 1 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:22205]
ENSCJAG00000017142	KNOWN_BY_PROJECTION	protein_coding	ABCC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	87048896	87110400	D	ATP-binding cassette, sub-family C (CFTR/MRP), member 2 [Source:HGNC Symbol;Acc:HGNC:53]
ENSCJAG00000003173	KNOWN_BY_PROJECTION	protein_coding	CAPN13	chromosome:C_jacchus3.2.1:14:1:108792865:1	77132631	77191714	R	calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
ENSCJAG00000018048	KNOWN	protein_coding	SLC2A8	chromosome:C_jacchus3.2.1:1:1:210400635:1	171321050	171332425	D	Solute carrier family 2, facilitated glucose transporter member 8 isoform 1 {ECO:0000313|EMBL:JAB04856.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033389}  [Source:UniProtKB/TrEMBL;Acc:F6SK66]
ENSCJAG00000002602	KNOWN_BY_PROJECTION	protein_coding	SAMD7	chromosome:C_jacchus3.2.1:17:1:74750902:1	8983853	9013697	R	sterile alpha motif domain containing 7 [Source:HGNC Symbol;Acc:HGNC:25394]
ENSCJAG00000018073	KNOWN_BY_PROJECTION	protein_coding	ZNF79	chromosome:C_jacchus3.2.1:1:1:210400635:1	171342397	171363492	D	zinc finger protein 79 [Source:HGNC Symbol;Acc:HGNC:13153]
ENSCJAG00000012198	KNOWN_BY_PROJECTION	protein_coding	DPY19L2	chromosome:C_jacchus3.2.1:8:1:128169293:1	3086591	3194054	R	dpy-19-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:19414]
ENSCJAG00000002607	NOVEL	protein_coding	ENSCJAG00000002607	chromosome:C_jacchus3.2.1:17:1:74750902:1	9025917	9026585	D	<no descrition>
ENSCJAG00000003150	KNOWN	protein_coding	GALNT14	chromosome:C_jacchus3.2.1:14:1:108792865:1	77318023	77548827	R	Polypeptide N-acetylgalactosaminyltransferase 14 isoform 1 {ECO:0000313|EMBL:JAB05688.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005778}  [Source:UniProtKB/TrEMBL;Acc:F7I9U3]
ENSCJAG00000018256	KNOWN_BY_PROJECTION	protein_coding	MACROD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	119528758	119710595	R	MACRO domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29598]
ENSCJAG00000002610	KNOWN_BY_PROJECTION	protein_coding	LRRC31	chromosome:C_jacchus3.2.1:17:1:74750902:1	9060711	9087650	D	leucine rich repeat containing 31 [Source:HGNC Symbol;Acc:HGNC:26261]
ENSCJAG00000018992	KNOWN	protein_coding	GABRA4	chromosome:C_jacchus3.2.1:3:1:190850796:1	143798341	143868492	D	Gamma-aminobutyric acid receptor subunit alpha-4 isoform 1 {ECO:0000313|EMBL:JAB21542.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035287}  [Source:UniProtKB/TrEMBL;Acc:F7IFW0]
ENSCJAG00000018126	KNOWN_BY_PROJECTION	protein_coding	VEGFB	chromosome:C_jacchus3.2.1:11:1:130397257:1	119623410	119789617	D	vascular endothelial growth factor B [Source:HGNC Symbol;Acc:HGNC:12681]
ENSCJAG00000002617	KNOWN_BY_PROJECTION	protein_coding	LRRIQ4	chromosome:C_jacchus3.2.1:17:1:74750902:1	9089367	9102063	R	leucine-rich repeats and IQ motif containing 4 [Source:HGNC Symbol;Acc:HGNC:34298]
ENSCJAG00000018996	KNOWN_BY_PROJECTION	protein_coding	COX7B2	chromosome:C_jacchus3.2.1:3:1:190850796:1	143949867	144019357	D	cytochrome c oxidase subunit VIIb2 [Source:HGNC Symbol;Acc:HGNC:24381]
ENSCJAG00000032955	NOVEL	protein_coding	ENSCJAG00000032955	chromosome:C_jacchus3.2.1:5:1:159171411:1	79076385	79080179	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049487}  [Source:UniProtKB/TrEMBL;Acc:F7AFQ2]
ENSCJAG00000012230	NOVEL	pseudogene	ENSCJAG00000012230	chromosome:C_jacchus3.2.1:8:1:128169293:1	3192202	3192940	D	<no descrition>
ENSCJAG00000012771	KNOWN_BY_PROJECTION	protein_coding	SPATA32	chromosome:C_jacchus3.2.1:5:1:159171411:1	79086852	79089138	R	spermatogenesis associated 32 [Source:HGNC Symbol;Acc:HGNC:26349]
ENSCJAG00000031702	NOVEL	pseudogene	ENSCJAG00000031702	chromosome:C_jacchus3.2.1:8:1:128169293:1	3194589	3194970	D	<no descrition>
ENSCJAG00000018082	NOVEL	protein_coding	ENSCJAG00000018082	chromosome:C_jacchus3.2.1:1:1:210400635:1	171365202	171368860	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033411}  [Source:UniProtKB/TrEMBL;Acc:F6RXN0]
ENSCJAG00000018998	KNOWN	protein_coding	GABRA2	chromosome:C_jacchus3.2.1:3:1:190850796:1	144327881	144476981	D	Gamma-aminobutyric acid receptor subunit alpha-2 {ECO:0000313|EMBL:JAB15183.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035334}  [Source:UniProtKB/TrEMBL;Acc:F7I411]
ENSCJAG00000020958	NOVEL	protein_coding	ENSCJAG00000020958	chromosome:C_jacchus3.2.1:10:1:132174527:1	36827322	36831471	R	<no descrition>
ENSCJAG00000012232	KNOWN_BY_PROJECTION	protein_coding	TBX20	chromosome:C_jacchus3.2.1:8:1:128169293:1	3213973	3266754	R	T-box 20 [Source:HGNC Symbol;Acc:HGNC:11598]
ENSCJAG00000018088	KNOWN_BY_PROJECTION	protein_coding	LRSAM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	171371674	171413391	D	leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
ENSCJAG00000002624	KNOWN_BY_PROJECTION	protein_coding	LRRC34	chromosome:C_jacchus3.2.1:17:1:74750902:1	9113224	9133272	D	leucine rich repeat containing 34 [Source:HGNC Symbol;Acc:HGNC:28408]
ENSCJAG00000018262	KNOWN_BY_PROJECTION	protein_coding	FLRT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	119642411	119657120	D	fibronectin leucine rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3760]
ENSCJAG00000012249	KNOWN	protein_coding	HERPUD2	chromosome:C_jacchus3.2.1:8:1:128169293:1	3661021	3710625	R	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein {ECO:0000313|EMBL:JAB02172.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029537}  [Source:UniProtKB/TrEMBL;Acc:F7ICC3]
ENSCJAG00000018209	KNOWN	protein_coding	STIP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	119729917	119748136	D	Stress-induced-phosphoprotein 1 {ECO:0000313|EMBL:JAB03668.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033776}  [Source:UniProtKB/TrEMBL;Acc:F6SRY5]
ENSCJAG00000012775	KNOWN_BY_PROJECTION	protein_coding	MAP3K14	chromosome:C_jacchus3.2.1:5:1:159171411:1	79093488	79156251	R	mitogen-activated protein kinase kinase kinase 14 [Source:HGNC Symbol;Acc:HGNC:6853]
ENSCJAG00000014770	KNOWN	protein_coding	KIAA1033	chromosome:C_jacchus3.2.1:9:1:124281992:1	95156911	95218553	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027322}  [Source:UniProtKB/TrEMBL;Acc:F7DVB3]
ENSCJAG00000012810	KNOWN_BY_PROJECTION	protein_coding	ARHGAP27	chromosome:C_jacchus3.2.1:5:1:159171411:1	79233406	79268691	R	Rho GTPase activating protein 27 [Source:HGNC Symbol;Acc:HGNC:31813]
ENSCJAG00000020961	KNOWN	protein_coding	RASGRP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	37551919	37628453	D	RAS guanyl-releasing protein 1 isoform a {ECO:0000313|EMBL:JAB17274.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039024}  [Source:UniProtKB/TrEMBL;Acc:F7FFF2]
ENSCJAG00000018109	KNOWN_BY_PROJECTION	protein_coding	FAM129B	chromosome:C_jacchus3.2.1:1:1:210400635:1	171419087	171448282	R	family with sequence similarity 129, member B [Source:HGNC Symbol;Acc:HGNC:25282]
ENSCJAG00000012276	KNOWN	protein_coding	SEPT7	chromosome:C_jacchus3.2.1:8:1:128169293:1	3817920	3922123	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022689}  [Source:UniProtKB/TrEMBL;Acc:F7IPU5]
ENSCJAG00000002629	KNOWN	protein_coding	MYNN	chromosome:C_jacchus3.2.1:17:1:74750902:1	9140206	9154482	R	Myoneurin isoform A {ECO:0000313|EMBL:JAB04510.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004794}  [Source:UniProtKB/TrEMBL;Acc:F7AKQ0]
ENSCJAG00000019029	KNOWN_BY_PROJECTION	protein_coding	GABRG1	chromosome:C_jacchus3.2.1:3:1:190850796:1	144590288	144672852	D	gamma-aminobutyric acid (GABA) A receptor, gamma 1 [Source:HGNC Symbol;Acc:HGNC:4086]
ENSCJAG00000019049	KNOWN	protein_coding	GNPDA2	chromosome:C_jacchus3.2.1:3:1:190850796:1	146072910	146096629	D	Glucosamine-6-phosphate isomerase 2 isoform 1 {ECO:0000313|EMBL:JAB09564.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035382}  [Source:UniProtKB/TrEMBL;Acc:F7HWZ3]
ENSCJAG00000012852	KNOWN_BY_PROJECTION	protein_coding	PLEKHM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	79273145	79326131	R	pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
ENSCJAG00000034108	KNOWN_BY_PROJECTION	protein_coding	CAPN14	chromosome:C_jacchus3.2.1:14:1:108792865:1	77584028	77622794	R	calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
ENSCJAG00000012868	NOVEL	pseudogene	ENSCJAG00000012868	chromosome:C_jacchus3.2.1:5:1:159171411:1	79339059	79339833	D	<no descrition>
ENSCJAG00000009044	NOVEL	protein_coding	ENSCJAG00000009044	chromosome:C_jacchus3.2.1:5:1:159171411:1	79343545	79351807	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016561}  [Source:UniProtKB/TrEMBL;Acc:F7AMI6]
ENSCJAG00000002650	KNOWN	protein_coding	ACTRT3	chromosome:C_jacchus3.2.1:17:1:74750902:1	9156700	9159525	D	Actin-related protein T3 {ECO:0000313|EMBL:JAB09615.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004797}  [Source:UniProtKB/TrEMBL;Acc:F7AKM4]
ENSCJAG00000019056	KNOWN	protein_coding	GUF1	chromosome:C_jacchus3.2.1:3:1:190850796:1	146098957	146121334	R	Translation factor GUF1, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03137}  [Source:UniProtKB/TrEMBL;Acc:F7IQ52]
ENSCJAG00000020037	NOVEL	pseudogene	ENSCJAG00000020037	chromosome:C_jacchus3.2.1:5:1:159171411:1	79406166	79407252	D	<no descrition>
ENSCJAG00000003137	KNOWN	protein_coding	EHD3	chromosome:C_jacchus3.2.1:14:1:108792865:1	77637425	77675141	D	EH domain-containing protein 3 {ECO:0000313|EMBL:JAB02448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005725}  [Source:UniProtKB/TrEMBL;Acc:F7IEJ4]
ENSCJAG00000012400	KNOWN	protein_coding	EEPD1	chromosome:C_jacchus3.2.1:8:1:128169293:1	4118855	4265572	D	Endonuclease/exonuclease/phosphatase family domain-containing protein 1 {ECO:0000313|EMBL:JAB02041.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022701}  [Source:UniProtKB/TrEMBL;Acc:F7IHT9]
ENSCJAG00000020030	NOVEL	protein_coding	ENSCJAG00000020030	chromosome:C_jacchus3.2.1:5:1:159171411:1	79437936	79457300	R	Golgi SNAP receptor complex member 2 {ECO:0000256|PIRNR:PIRNR028865}  [Source:UniProtKB/TrEMBL;Acc:F6VHU6]
ENSCJAG00000012402	KNOWN	protein_coding	KIAA0895	chromosome:C_jacchus3.2.1:8:1:128169293:1	4291366	4351593	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022728}; Uncharacterized protein KIAA0895 isoform 3 {ECO:0000313|EMBL:JAB14742.1}  [Source:UniProtKB/TrEMBL;Acc:F7IFF7]
ENSCJAG00000017162	KNOWN_BY_PROJECTION	protein_coding	DNMBP	chromosome:C_jacchus3.2.1:12:1:121768101:1	87137774	87236718	R	dynamin binding protein [Source:HGNC Symbol;Acc:HGNC:30373]
ENSCJAG00000019817	KNOWN	protein_coding	STXBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	171520905	171611165	D	Syntaxin-binding protein 1 isoform b {ECO:0000313|EMBL:JAB03013.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046854}  [Source:UniProtKB/TrEMBL;Acc:F7IMD1]
ENSCJAG00000003090	KNOWN_BY_PROJECTION	protein_coding	XDH	chromosome:C_jacchus3.2.1:14:1:108792865:1	77740531	77821705	R	xanthine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:12805]
ENSCJAG00000017197	KNOWN_BY_PROJECTION	protein_coding	CPN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	87291363	87331131	R	carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2312]
ENSCJAG00000012416	KNOWN_BY_PROJECTION	protein_coding	ANLN	chromosome:C_jacchus3.2.1:8:1:128169293:1	4351341	4412002	D	anillin, actin binding protein [Source:HGNC Symbol;Acc:HGNC:14082]
ENSCJAG00000019090	KNOWN_BY_PROJECTION	protein_coding	YIPF7	chromosome:C_jacchus3.2.1:3:1:190850796:1	146148706	146186278	D	Yip1 domain family, member 7 [Source:HGNC Symbol;Acc:HGNC:26825]
ENSCJAG00000019097	KNOWN	protein_coding	KCTD8	chromosome:C_jacchus3.2.1:3:1:190850796:1	146371394	146627742	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049100}  [Source:UniProtKB/TrEMBL;Acc:F7CFS7]
ENSCJAG00000019100	NOVEL	protein_coding	ENSCJAG00000019100	chromosome:C_jacchus3.2.1:3:1:190850796:1	146838533	146839667	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035448}  [Source:UniProtKB/TrEMBL;Acc:F7IKG4]
ENSCJAG00000005770	KNOWN	protein_coding	POLH	chromosome:C_jacchus3.2.1:4:1:171630274:1	44919700	44959157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010633}  [Source:UniProtKB/TrEMBL;Acc:F7HZ00]
ENSCJAG00000019104	KNOWN_BY_PROJECTION	protein_coding	GRXCR1	chromosome:C_jacchus3.2.1:3:1:190850796:1	147760265	147913655	R	glutaredoxin, cysteine rich 1 [Source:HGNC Symbol;Acc:HGNC:31673]
ENSCJAG00000002651	KNOWN_BY_PROJECTION	protein_coding	MECOM	chromosome:C_jacchus3.2.1:17:1:74750902:1	9710296	9827305	D	MDS1 and EVI1 complex locus [Source:HGNC Symbol;Acc:HGNC:3498]
ENSCJAG00000018177	KNOWN_BY_PROJECTION	protein_coding	FERMT3	chromosome:C_jacchus3.2.1:11:1:130397257:1	119750519	119775094	D	fermitin family member 3 [Source:HGNC Symbol;Acc:HGNC:23151]
ENSCJAG00000020980	KNOWN_BY_PROJECTION	protein_coding	FAM98B	chromosome:C_jacchus3.2.1:10:1:132174527:1	37631679	37658933	R	family with sequence similarity 98, member B [Source:HGNC Symbol;Acc:HGNC:26773]
ENSCJAG00000003082	KNOWN_BY_PROJECTION	protein_coding	SRD5A2	chromosome:C_jacchus3.2.1:14:1:108792865:1	77931990	77992091	R	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) [Source:HGNC Symbol;Acc:HGNC:11285]
ENSCJAG00000012461	KNOWN_BY_PROJECTION	protein_coding	AOAH	chromosome:C_jacchus3.2.1:8:1:128169293:1	4450520	4678491	R	acyloxyacyl hydrolase (neutrophil) [Source:HGNC Symbol;Acc:HGNC:548]
ENSCJAG00000019105	KNOWN	protein_coding	ATP8A1	chromosome:C_jacchus3.2.1:3:1:190850796:1	148133377	148386158	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035628}  [Source:UniProtKB/TrEMBL;Acc:F7HD27]
ENSCJAG00000005800	KNOWN	protein_coding	GTPBP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	44961627	44972667	R	GTP-binding protein 2 {ECO:0000313|EMBL:JAB05822.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010730}  [Source:UniProtKB/TrEMBL;Acc:F7IHS5]
ENSCJAG00000018169	KNOWN	protein_coding	TRPT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	119775003	119916410	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033610}; tRNA 2'-phosphotransferase 1 isoform 1 {ECO:0000313|EMBL:JAB12248.1}  [Source:UniProtKB/TrEMBL;Acc:F6RKQ8]
ENSCJAG00000020024	KNOWN_BY_PROJECTION	protein_coding	WNT9B	chromosome:C_jacchus3.2.1:5:1:159171411:1	79504515	79532842	R	wingless-type MMTV integration site family, member 9B [Source:HGNC Symbol;Acc:HGNC:12779]
ENSCJAG00000018163	KNOWN_BY_PROJECTION	protein_coding	NUDT22	chromosome:C_jacchus3.2.1:11:1:130397257:1	119777789	119781032	D	nudix (nucleoside diphosphate linked moiety X)-type motif 22 [Source:HGNC Symbol;Acc:HGNC:28189]
ENSCJAG00000020014	KNOWN	protein_coding	WNT3	chromosome:C_jacchus3.2.1:5:1:159171411:1	79568764	79623890	D	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F6W2S6]
ENSCJAG00000012484	KNOWN	protein_coding	ELMO1	chromosome:C_jacchus3.2.1:8:1:128169293:1	4808799	5405830	R	Engulfment and cell motility protein 1 isoform 1 {ECO:0000313|EMBL:JAB18569.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022958}  [Source:UniProtKB/TrEMBL;Acc:F7IAL7]
ENSCJAG00000019835	KNOWN_BY_PROJECTION	protein_coding	C9orf117	chromosome:C_jacchus3.2.1:1:1:210400635:1	171626911	171638130	D	chromosome 9 open reading frame 117 [Source:HGNC Symbol;Acc:HGNC:27843]
ENSCJAG00000018151	KNOWN	protein_coding	DNAJC4	chromosome:C_jacchus3.2.1:11:1:130397257:1	119781394	119784931	D	DnaJ homolog subfamily C member 4 {ECO:0000313|EMBL:JAB10797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033580}  [Source:UniProtKB/TrEMBL;Acc:F6SIK5]
ENSCJAG00000019841	KNOWN	protein_coding	PTRH1	chromosome:C_jacchus3.2.1:1:1:210400635:1	171636435	171638118	R	Putative peptidyl-tRNA hydrolase {ECO:0000313|EMBL:JAB02039.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036878}  [Source:UniProtKB/TrEMBL;Acc:F6SY06]
ENSCJAG00000018124	KNOWN_BY_PROJECTION	protein_coding	FKBP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	119792042	119797415	D	FK506 binding protein 2, 13kDa [Source:HGNC Symbol;Acc:HGNC:3718]
ENSCJAG00000008763	KNOWN_BY_PROJECTION	protein_coding	ALK	chromosome:C_jacchus3.2.1:14:1:108792865:1	78412493	79205973	D	anaplastic lymphoma receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:427]
ENSCJAG00000017211	KNOWN	protein_coding	ERLIN1	chromosome:C_jacchus3.2.1:12:1:121768101:1	87405608	87443372	R	Erlin-1 {ECO:0000313|EMBL:JAB05821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044108}  [Source:UniProtKB/TrEMBL;Acc:F7GL48]
ENSCJAG00000019842	KNOWN_BY_PROJECTION	protein_coding	SWI5	chromosome:C_jacchus3.2.1:1:1:210400635:1	171638497	172224184	D	SWI5 recombination repair homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:31412]
ENSCJAG00000018111	KNOWN	protein_coding	PPP1R14B	chromosome:C_jacchus3.2.1:11:1:130397257:1	119797774	119800714	R	Protein phosphatase 1 regulatory subunit 14B {ECO:0000313|EMBL:JAB10089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033495}  [Source:UniProtKB/TrEMBL;Acc:F6Q451]
ENSCJAG00000019847	KNOWN_BY_PROJECTION	protein_coding	TTC16	chromosome:C_jacchus3.2.1:1:1:210400635:1	171638616	171656259	D	tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
ENSCJAG00000019994	KNOWN	protein_coding	NSF	chromosome:C_jacchus3.2.1:5:1:159171411:1	79630746	79763309	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044510}  [Source:UniProtKB/TrEMBL;Acc:F7GQY0]
ENSCJAG00000012554	KNOWN_BY_PROJECTION	protein_coding	NME8	chromosome:C_jacchus3.2.1:8:1:128169293:1	5705725	5756816	D	NME/NM23 family member 8 [Source:HGNC Symbol;Acc:HGNC:16473]
ENSCJAG00000020983	KNOWN	protein_coding	SPRED1	chromosome:C_jacchus3.2.1:10:1:132174527:1	37766696	37876699	R	Sprouty-related, EVH1 domain-containing protein 1 {ECO:0000313|EMBL:JAB04947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039039}  [Source:UniProtKB/TrEMBL;Acc:F7F2E7]
ENSCJAG00000014883	KNOWN	protein_coding	APPL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	95225202	95289584	R	DCC-interacting protein 13-beta isoform 1 {ECO:0000313|EMBL:JAB03742.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027523}  [Source:UniProtKB/TrEMBL;Acc:F7E975]
ENSCJAG00000020986	KNOWN_BY_PROJECTION	protein_coding	TMCO5A	chromosome:C_jacchus3.2.1:10:1:132174527:1	38177468	38204700	R	transmembrane and coiled-coil domains 5A [Source:HGNC Symbol;Acc:HGNC:28558]
ENSCJAG00000018081	KNOWN_BY_PROJECTION	protein_coding	PLCB3	chromosome:C_jacchus3.2.1:11:1:130397257:1	119808509	119824103	D	phospholipase C, beta 3 (phosphatidylinositol-specific) [Source:HGNC Symbol;Acc:HGNC:9056]
ENSCJAG00000012585	KNOWN_BY_PROJECTION	protein_coding	SFRP4	chromosome:C_jacchus3.2.1:8:1:128169293:1	5764318	5775502	R	secreted frizzled-related protein 4 [Source:HGNC Symbol;Acc:HGNC:10778]
ENSCJAG00000023279	NOVEL	pseudogene	ENSCJAG00000023279	chromosome:C_jacchus3.2.1:10:1:132174527:1	38363498	38364573	D	<no descrition>
ENSCJAG00000019854	KNOWN	protein_coding	TOR2A	chromosome:C_jacchus3.2.1:1:1:210400635:1	171656700	171660736	R	Prosalusin isoform a {ECO:0000313|EMBL:JAB11029.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036907}  [Source:UniProtKB/TrEMBL;Acc:F6REQ3]
ENSCJAG00000012617	KNOWN	protein_coding	EPDR1	chromosome:C_jacchus3.2.1:8:1:128169293:1	5779743	5808233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023094}  [Source:UniProtKB/TrEMBL;Acc:F7I8Z1]
ENSCJAG00000018074	KNOWN	protein_coding	BAD	chromosome:C_jacchus3.2.1:11:1:130397257:1	119826375	119842420	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033392}  [Source:UniProtKB/TrEMBL;Acc:F6SJS6]
ENSCJAG00000012622	KNOWN_BY_PROJECTION	protein_coding	STARD3NL	chromosome:C_jacchus3.2.1:8:1:128169293:1	6006585	6059163	D	STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
ENSCJAG00000033125	NOVEL	protein_coding	ENSCJAG00000033125	chromosome:C_jacchus3.2.1:17:1:74750902:1	10077606	10086574	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046316}  [Source:UniProtKB/TrEMBL;Acc:F6YA80]
ENSCJAG00000020992	KNOWN	protein_coding	MEIS2	chromosome:C_jacchus3.2.1:10:1:132174527:1	39123784	39339143	D	Homeobox protein Meis2 isoform c {ECO:0000313|EMBL:JAB16976.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039092}  [Source:UniProtKB/TrEMBL;Acc:F7EAH2]
ENSCJAG00000008216	KNOWN_BY_PROJECTION	protein_coding	NLRP11	chromosome:C_jacchus3.2.1:17:1:74750902:1	10688896	10690901	D	NLR family, pyrin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:22945]
ENSCJAG00000017244	KNOWN_BY_PROJECTION	protein_coding	CHUK	chromosome:C_jacchus3.2.1:12:1:121768101:1	87448296	87487428	R	conserved helix-loop-helix ubiquitous kinase [Source:HGNC Symbol;Acc:HGNC:1974]
ENSCJAG00000012635	NOVEL	protein_coding	ENSCJAG00000012635	chromosome:C_jacchus3.2.1:8:1:128169293:1	6067541	6127548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023148}  [Source:UniProtKB/TrEMBL;Acc:F7HZJ0]
ENSCJAG00000002711	KNOWN_BY_PROJECTION	protein_coding	GOLIM4	chromosome:C_jacchus3.2.1:17:1:74750902:1	10815262	10897136	D	golgi integral membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:15448]
ENSCJAG00000012646	KNOWN_BY_PROJECTION	protein_coding	TRGV10	chromosome:C_jacchus3.2.1:8:1:128169293:1	6107623	6108095	R	T cell receptor gamma variable 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:12285]
ENSCJAG00000012650	NOVEL	protein_coding	ENSCJAG00000012650	chromosome:C_jacchus3.2.1:8:1:128169293:1	6139208	6139693	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023165}  [Source:UniProtKB/TrEMBL;Acc:F7HX54]
ENSCJAG00000019858	KNOWN_BY_PROJECTION	protein_coding	SH2D3C	chromosome:C_jacchus3.2.1:1:1:210400635:1	171663493	171707842	R	SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
ENSCJAG00000015672	KNOWN_BY_PROJECTION	protein_coding	BSND	chromosome:C_jacchus3.2.1:7:1:155834243:1	90245147	90259327	D	barttin CLCNK-type chloride channel accessory beta subunit [Source:HGNC Symbol;Acc:HGNC:16512]
ENSCJAG00000032747	NOVEL	protein_coding	ENSCJAG00000032747	chromosome:C_jacchus3.2.1:17:1:74750902:1	10997615	11022661	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042199}  [Source:UniProtKB/TrEMBL;Acc:F6ULD2]
ENSCJAG00000002746	KNOWN	protein_coding	SERPINI1	chromosome:C_jacchus3.2.1:17:1:74750902:1	11096456	11184995	R	Neuroserpin {ECO:0000313|EMBL:JAB07143.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005004}  [Source:UniProtKB/TrEMBL;Acc:F7I3B6]
ENSCJAG00000015682	KNOWN_BY_PROJECTION	protein_coding	PCSK9	chromosome:C_jacchus3.2.1:7:1:155834243:1	90282416	90305640	D	proprotein convertase subtilisin/kexin type 9 [Source:HGNC Symbol;Acc:HGNC:20001]
ENSCJAG00000017176	KNOWN	protein_coding	CWF19L1	chromosome:C_jacchus3.2.1:12:1:121768101:1	87490917	87542308	R	CWF19-like protein 1 {ECO:0000313|EMBL:JAB03370.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004314}  [Source:UniProtKB/TrEMBL;Acc:F7CL88]
ENSCJAG00000018062	KNOWN	protein_coding	GPR137	chromosome:C_jacchus3.2.1:11:1:130397257:1	119842534	119847587	D	Integral membrane protein GPR137 isoform 2 {ECO:0000313|EMBL:JAB04048.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033387}  [Source:UniProtKB/TrEMBL;Acc:F6SKA0]
ENSCJAG00000018060	KNOWN_BY_PROJECTION	protein_coding	KCNK4	chromosome:C_jacchus3.2.1:11:1:130397257:1	119850947	119857898	D	potassium channel, two pore domain subfamily K, member 4 [Source:HGNC Symbol;Acc:HGNC:6279]
ENSCJAG00000018046	KNOWN_BY_PROJECTION	protein_coding	TEX40	chromosome:C_jacchus3.2.1:11:1:130397257:1	119858600	119862062	D	testis expressed 40 [Source:HGNC Symbol;Acc:HGNC:19231]
ENSCJAG00000018030	KNOWN	protein_coding	ESRRA	chromosome:C_jacchus3.2.1:11:1:130397257:1	119862965	119873489	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033307}  [Source:UniProtKB/TrEMBL;Acc:F6PKJ0]
ENSCJAG00000032007	KNOWN	protein_coding	C12ORF75	chromosome:C_jacchus3.2.1:9:1:124281992:1	95365842	95404528	D	Overexpressed in colon carcinoma 1 protein {ECO:0000313|EMBL:JAB12005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048473}  [Source:UniProtKB/TrEMBL;Acc:F7HDD5]
ENSCJAG00000017266	NOVEL	protein_coding	ENSCJAG00000017266	chromosome:C_jacchus3.2.1:12:1:121768101:1	87505549	87506343	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031769}  [Source:UniProtKB/TrEMBL;Acc:F7HLB0]
ENSCJAG00000019868	KNOWN_BY_PROJECTION	protein_coding	CDK9	chromosome:C_jacchus3.2.1:1:1:210400635:1	171715095	171719349	D	cyclin-dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]
ENSCJAG00000008811	KNOWN	protein_coding	CLIP4	chromosome:C_jacchus3.2.1:14:1:108792865:1	79215060	79321087	R	CAP-Gly domain-containing linker protein 4 {ECO:0000313|EMBL:JAB07285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016290}  [Source:UniProtKB/TrEMBL;Acc:F6V5F8]
ENSCJAG00000015606	KNOWN_BY_PROJECTION	protein_coding	COPS6	chromosome:C_jacchus3.2.1:2:1:204313951:1	11816275	11819465	R	COP9 signalosome subunit 6 [Source:HGNC Symbol;Acc:HGNC:21749]
ENSCJAG00000019210	KNOWN	protein_coding	SHISA3	chromosome:C_jacchus3.2.1:3:1:190850796:1	148391709	148396541	R	Protein shisa-3 homolog {ECO:0000313|EMBL:JAB21743.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035650}  [Source:UniProtKB/TrEMBL;Acc:F7H2J2]
ENSCJAG00000018026	NOVEL	protein_coding	ENSCJAG00000018026	chromosome:C_jacchus3.2.1:11:1:130397257:1	119873588	119874254	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033299}  [Source:UniProtKB/TrEMBL;Acc:F6Q6G2]
ENSCJAG00000014948	KNOWN	protein_coding	NUAK1	chromosome:C_jacchus3.2.1:9:1:124281992:1	96081934	96154724	R	NUAK family SNF1-like kinase 1 {ECO:0000313|EMBL:JAB13576.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027550}  [Source:UniProtKB/TrEMBL;Acc:F7DDD3]
ENSCJAG00000017269	KNOWN_BY_PROJECTION	protein_coding	BLOC1S2	chromosome:C_jacchus3.2.1:12:1:121768101:1	87550151	87559913	R	biogenesis of lysosomal organelles complex-1, subunit 2 [Source:HGNC Symbol;Acc:HGNC:20984]
ENSCJAG00000015656	KNOWN	protein_coding	ZNF3	chromosome:C_jacchus3.2.1:2:1:204313951:1	11831286	11855532	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039626}; Zinc finger protein 3 isoform 2 {ECO:0000313|EMBL:JAB11792.1}  [Source:UniProtKB/TrEMBL;Acc:F7GP70]
ENSCJAG00000019212	KNOWN_BY_PROJECTION	protein_coding	BEND4	chromosome:C_jacchus3.2.1:3:1:190850796:1	148630770	148665107	D	BEN domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23815]
ENSCJAG00000019961	KNOWN_BY_PROJECTION	protein_coding	CRHR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	79809243	80014945	D	corticotropin releasing hormone receptor 1 [Source:HGNC Symbol;Acc:HGNC:2357]
ENSCJAG00000019869	KNOWN	protein_coding	FPGS	chromosome:C_jacchus3.2.1:1:1:210400635:1	171736503	171747728	D	Folylpolyglutamate synthase {ECO:0000256|PIRNR:PIRNR038895}  [Source:UniProtKB/TrEMBL;Acc:F6QU94]
ENSCJAG00000005854	KNOWN	protein_coding	MAD2L1BP	chromosome:C_jacchus3.2.1:4:1:171630274:1	44976609	44987023	D	MAD2L1-binding protein isoform 2 {ECO:0000313|EMBL:JAB02082.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010745}  [Source:UniProtKB/TrEMBL;Acc:F7IFH3]
ENSCJAG00000015664	KNOWN	protein_coding	ZKSCAN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11854345	11902963	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028870}; Zinc finger protein with KRAB and SCAN domains 1 {ECO:0000313|EMBL:JAB06613.1}  [Source:UniProtKB/TrEMBL;Acc:F6W5I1]
ENSCJAG00000017374	KNOWN	protein_coding	RSPH9	chromosome:C_jacchus3.2.1:4:1:171630274:1	44992508	45010814	D	Radial spoke head protein 9 homolog isoform 1 {ECO:0000313|EMBL:JAB12817.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032005}  [Source:UniProtKB/TrEMBL;Acc:F7DLG8]
ENSCJAG00000017347	KNOWN_BY_PROJECTION	protein_coding	SEC31B	chromosome:C_jacchus3.2.1:12:1:121768101:1	87561326	87793303	R	SEC31 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:23197]
ENSCJAG00000017382	KNOWN	protein_coding	MRPS18A	chromosome:C_jacchus3.2.1:4:1:171630274:1	45010364	45031113	R	28S ribosomal protein S18a, mitochondrial isoform 2 {ECO:0000313|EMBL:JAB42390.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051873}  [Source:UniProtKB/TrEMBL;Acc:F6VF92]
ENSCJAG00000018014	NOVEL	protein_coding	ENSCJAG00000018014	chromosome:C_jacchus3.2.1:11:1:130397257:1	119874826	119877977	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033282}  [Source:UniProtKB/TrEMBL;Acc:F6QGL4]
ENSCJAG00000021003	KNOWN	protein_coding	C15ORF41	chromosome:C_jacchus3.2.1:10:1:132174527:1	39421038	39673067	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039095}; Uncharacterized protein C15orf41 isoform 1 {ECO:0000313|EMBL:JAB04008.1}  [Source:UniProtKB/TrEMBL;Acc:F7EAF3]
ENSCJAG00000002763	KNOWN	protein_coding	PDCD10	chromosome:C_jacchus3.2.1:17:1:74750902:1	11185860	11236268	D	Programmed cell death protein 10 {ECO:0000313|EMBL:JAB03645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005025}  [Source:UniProtKB/TrEMBL;Acc:F7I396]
ENSCJAG00000008907	KNOWN_BY_PROJECTION	protein_coding	C2orf71	chromosome:C_jacchus3.2.1:14:1:108792865:1	79338580	79347582	D	chromosome 2 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:34383]
ENSCJAG00000017980	KNOWN_BY_PROJECTION	protein_coding	CCDC88B	chromosome:C_jacchus3.2.1:11:1:130397257:1	119903548	119919969	D	coiled-coil domain containing 88B [Source:HGNC Symbol;Acc:HGNC:26757]
ENSCJAG00000015739	KNOWN_BY_PROJECTION	protein_coding	USP24	chromosome:C_jacchus3.2.1:7:1:155834243:1	90308363	90413555	R	ubiquitin specific peptidase 24 [Source:HGNC Symbol;Acc:HGNC:12623]
ENSCJAG00000017957	KNOWN_BY_PROJECTION	protein_coding	RPS6KA4	chromosome:C_jacchus3.2.1:11:1:130397257:1	119924403	119936447	D	ribosomal protein S6 kinase, 90kDa, polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:10433]
ENSCJAG00000002774	KNOWN_BY_PROJECTION	protein_coding	WDR49	chromosome:C_jacchus3.2.1:17:1:74750902:1	11271764	11438870	D	WD repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:26587]
ENSCJAG00000017954	NOVEL	pseudogene	ENSCJAG00000017954	chromosome:C_jacchus3.2.1:11:1:130397257:1	120018456	120019338	R	<no descrition>
ENSCJAG00000008912	KNOWN_BY_PROJECTION	protein_coding	FAM179A	chromosome:C_jacchus3.2.1:14:1:108792865:1	79360692	79428472	R	family with sequence similarity 179, member A [Source:HGNC Symbol;Acc:HGNC:33715]
ENSCJAG00000019585	NOVEL	protein_coding	ENSCJAG00000019585	chromosome:C_jacchus3.2.1:11:1:130397257:1	120095634	120096005	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036364}  [Source:UniProtKB/TrEMBL;Acc:F7GMV6]
ENSCJAG00000014967	KNOWN_BY_PROJECTION	protein_coding	CKAP4	chromosome:C_jacchus3.2.1:9:1:124281992:1	96237195	96247496	R	cytoskeleton-associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16991]
ENSCJAG00000014977	KNOWN	protein_coding	TCP11L2	chromosome:C_jacchus3.2.1:9:1:124281992:1	96300488	96350419	D	T-complex protein 11-like protein 2 {ECO:0000313|EMBL:JAB06455.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027586}  [Source:UniProtKB/TrEMBL;Acc:F7HF97]
ENSCJAG00000002977	KNOWN_BY_PROJECTION	protein_coding	SLC22A12	chromosome:C_jacchus3.2.1:11:1:130397257:1	120157063	120200790	D	solute carrier family 22 (organic anion/urate transporter), member 12 [Source:HGNC Symbol;Acc:HGNC:17989]
ENSCJAG00000002795	KNOWN_BY_PROJECTION	protein_coding	SERPINI2	chromosome:C_jacchus3.2.1:17:1:74750902:1	11443468	11475532	D	serpin peptidase inhibitor, clade I (pancpin), member 2 [Source:HGNC Symbol;Acc:HGNC:8945]
ENSCJAG00000017395	NOVEL	protein_coding	ENSCJAG00000017395	chromosome:C_jacchus3.2.1:4:1:171630274:1	45049581	45050313	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032031}  [Source:UniProtKB/TrEMBL;Acc:F7HHU8]
ENSCJAG00000034044	NOVEL	protein_coding	ENSCJAG00000034044	chromosome:C_jacchus3.2.1:2:1:204313951:1	11938632	11939257	R	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F6W546]
ENSCJAG00000015689	NOVEL	protein_coding	ENSCJAG00000015689	chromosome:C_jacchus3.2.1:2:1:204313951:1	11944324	11949929	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028875}  [Source:UniProtKB/TrEMBL;Acc:F6W5E2]
ENSCJAG00000015693	KNOWN_BY_PROJECTION	protein_coding	AZGP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11958637	11968400	D	alpha-2-glycoprotein 1, zinc-binding [Source:HGNC Symbol;Acc:HGNC:910]
ENSCJAG00000012459	KNOWN	protein_coding	VEGF	chromosome:C_jacchus3.2.1:4:1:171630274:1	45119093	45136597	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022883}  [Source:UniProtKB/TrEMBL;Acc:F7IPP9]
ENSCJAG00000015695	NOVEL	protein_coding	ENSCJAG00000015695	chromosome:C_jacchus3.2.1:2:1:204313951:1	11994639	12001017	D	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F6W551]
ENSCJAG00000002808	KNOWN_BY_PROJECTION	protein_coding	ZBBX	chromosome:C_jacchus3.2.1:17:1:74750902:1	11515249	11629479	D	zinc finger, B-box domain containing [Source:HGNC Symbol;Acc:HGNC:26245]
ENSCJAG00000019226	KNOWN	protein_coding	SLC30A9	chromosome:C_jacchus3.2.1:3:1:190850796:1	148704467	148805882	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035735}; Zinc transporter 9 {ECO:0000313|EMBL:JAB07440.1}  [Source:UniProtKB/TrEMBL;Acc:F7FLK2]
ENSCJAG00000015702	KNOWN	protein_coding	TRIM4	chromosome:C_jacchus3.2.1:2:1:204313951:1	12005538	12033106	D	Tripartite motif-containing protein 4 isoform beta {ECO:0000313|EMBL:JAB04237.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028904}  [Source:UniProtKB/TrEMBL;Acc:F6UD69]
ENSCJAG00000019960	NOVEL	protein_coding	ENSCJAG00000019960	chromosome:C_jacchus3.2.1:5:1:159171411:1	80024149	80025762	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037123}  [Source:UniProtKB/TrEMBL;Acc:F7CG51]
ENSCJAG00000008946	KNOWN	protein_coding	WDR43	chromosome:C_jacchus3.2.1:14:1:108792865:1	79464949	79526734	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016416}; WD repeat-containing protein 43 {ECO:0000313|EMBL:JAB14016.1}  [Source:UniProtKB/TrEMBL;Acc:F6YMU0]
ENSCJAG00000019875	KNOWN_BY_PROJECTION	protein_coding	ENG	chromosome:C_jacchus3.2.1:1:1:210400635:1	171748081	171788744	R	endoglin [Source:HGNC Symbol;Acc:HGNC:3349]
ENSCJAG00000021006	KNOWN	protein_coding	DPH6	chromosome:C_jacchus3.2.1:10:1:132174527:1	40708464	40992219	D	ATP-binding domain-containing protein 4 isoform 1 {ECO:0000313|EMBL:JAB09083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039102}  [Source:UniProtKB/TrEMBL;Acc:F7CWG9]
ENSCJAG00000008980	KNOWN	protein_coding	TRMT61B	chromosome:C_jacchus3.2.1:14:1:108792865:1	79548506	79562474	D	Putative tRNA (Adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61B {ECO:0000313|EMBL:JAB08113.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016422}  [Source:UniProtKB/TrEMBL;Acc:F6Y3V6]
ENSCJAG00000021011	NOVEL	protein_coding	ENSCJAG00000021011	chromosome:C_jacchus3.2.1:10:1:132174527:1	41041566	41042784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039109}  [Source:UniProtKB/TrEMBL;Acc:F7CW86]
ENSCJAG00000023281	NOVEL	protein_coding	ENSCJAG00000023281	chromosome:C_jacchus3.2.1:10:1:132174527:1	41242245	41251843	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041793}  [Source:UniProtKB/TrEMBL;Acc:F7FDZ9]
ENSCJAG00000021013	KNOWN	protein_coding	ZNF770	chromosome:C_jacchus3.2.1:10:1:132174527:1	41368727	41376146	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039112}; Zinc finger protein 770 {ECO:0000313|EMBL:JAB05231.1}  [Source:UniProtKB/TrEMBL;Acc:F7HFV3]
ENSCJAG00000021016	NOVEL	pseudogene	ENSCJAG00000021016	chromosome:C_jacchus3.2.1:10:1:132174527:1	41376970	41378704	R	<no descrition>
ENSCJAG00000021018	NOVEL	pseudogene	ENSCJAG00000021018	chromosome:C_jacchus3.2.1:10:1:132174527:1	41386937	41387314	D	<no descrition>
ENSCJAG00000019935	KNOWN_BY_PROJECTION	protein_coding	MAPT	chromosome:C_jacchus3.2.1:5:1:159171411:1	80067245	80198419	D	microtubule-associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]
ENSCJAG00000014985	KNOWN_BY_PROJECTION	protein_coding	POLR3B	chromosome:C_jacchus3.2.1:9:1:124281992:1	96361088	96512777	D	polymerase (RNA) III (DNA directed) polypeptide B [Source:HGNC Symbol;Acc:HGNC:30348]
ENSCJAG00000035708	KNOWN	protein_coding	CYP3A21	chromosome:C_jacchus3.2.1:2:1:204313951:1	12136776	12255863	D	Callithrix jacchus cytochrome P450, family 3, subfamily A, polypeptide 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001204440]
ENSCJAG00000021021	KNOWN_BY_PROJECTION	protein_coding	AQR	chromosome:C_jacchus3.2.1:10:1:132174527:1	41409514	41520841	D	aquarius intron-binding spliceosomal factor [Source:HGNC Symbol;Acc:HGNC:29513]
ENSCJAG00000008984	KNOWN_BY_PROJECTION	protein_coding	SPDYA	chromosome:C_jacchus3.2.1:14:1:108792865:1	79561690	79598913	R	speedy/RINGO cell cycle regulator family member A [Source:HGNC Symbol;Acc:HGNC:30613]
ENSCJAG00000002832	KNOWN_BY_PROJECTION	protein_coding	BCHE	chromosome:C_jacchus3.2.1:17:1:74750902:1	12733242	12792047	D	butyrylcholinesterase [Source:HGNC Symbol;Acc:HGNC:983]
ENSCJAG00000002835	KNOWN	protein_coding	SLITRK3	chromosome:C_jacchus3.2.1:17:1:74750902:1	13186733	13196670	D	SLIT and NTRK-like protein 3 {ECO:0000313|EMBL:JAB22042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005141}  [Source:UniProtKB/TrEMBL;Acc:F7IJP7]
ENSCJAG00000008988	KNOWN	protein_coding	PPP1CB	chromosome:C_jacchus3.2.1:14:1:108792865:1	79606291	79651154	R	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F6V3B9]
ENSCJAG00000019257	NOVEL	protein_coding	ENSCJAG00000019257	chromosome:C_jacchus3.2.1:3:1:190850796:1	148814733	148815934	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035738}  [Source:UniProtKB/TrEMBL;Acc:F7F8M9]
ENSCJAG00000019259	KNOWN	protein_coding	TMEM33	chromosome:C_jacchus3.2.1:3:1:190850796:1	148842055	148863081	R	Transmembrane protein 33 {ECO:0000313|EMBL:JAB10673.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035745}  [Source:UniProtKB/TrEMBL;Acc:F7F832]
ENSCJAG00000031132	NOVEL	protein_coding	ENSCJAG00000031132	chromosome:C_jacchus3.2.1:14:1:108792865:1	79770002	79800145	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042198}  [Source:UniProtKB/TrEMBL;Acc:F6ULD9]
ENSCJAG00000002930	KNOWN_BY_PROJECTION	protein_coding	NRXN2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120206965	120318358	R	neurexin 2 [Source:HGNC Symbol;Acc:HGNC:8009]
ENSCJAG00000033289	KNOWN_BY_PROJECTION	protein_coding	PLB1	chromosome:C_jacchus3.2.1:14:1:108792865:1	79826747	79860543	R	phospholipase B1 [Source:HGNC Symbol;Acc:HGNC:30041]
ENSCJAG00000002837	KNOWN_BY_PROJECTION	protein_coding	SI	chromosome:C_jacchus3.2.1:17:1:74750902:1	13277386	13371974	D	sucrase-isomaltase (alpha-glucosidase) [Source:HGNC Symbol;Acc:HGNC:10856]
ENSCJAG00000017338	KNOWN_BY_PROJECTION	protein_coding	SCD	chromosome:C_jacchus3.2.1:12:1:121768101:1	87628937	87650413	D	stearoyl-CoA desaturase (delta-9-desaturase) [Source:HGNC Symbol;Acc:HGNC:10571]
ENSCJAG00000009019	KNOWN	protein_coding	FOSL2	chromosome:C_jacchus3.2.1:14:1:108792865:1	80010318	80033600	R	Fos-related antigen 2 {ECO:0000313|EMBL:JAB04359.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016522}  [Source:UniProtKB/TrEMBL;Acc:F7C4Q6]
ENSCJAG00000036961	NOVEL	protein_coding	ENSCJAG00000036961	chromosome:C_jacchus3.2.1:14:1:108792865:1	80010318	80012073	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045468}  [Source:UniProtKB/TrEMBL;Acc:F6Q4C6]
ENSCJAG00000012454	KNOWN	protein_coding	MRPL14	chromosome:C_jacchus3.2.1:4:1:171630274:1	45463768	45480172	R	39S ribosomal protein L14, mitochondrial {ECO:0000313|EMBL:JAB01723.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022805}  [Source:UniProtKB/TrEMBL;Acc:F7HYX0]
ENSCJAG00000015034	KNOWN_BY_PROJECTION	protein_coding	RFX4	chromosome:C_jacchus3.2.1:9:1:124281992:1	96662959	96776374	D	regulatory factor X, 4 (influences HLA class II expression) [Source:HGNC Symbol;Acc:HGNC:9985]
ENSCJAG00000019264	KNOWN_BY_PROJECTION	protein_coding	PHOX2B	chromosome:C_jacchus3.2.1:3:1:190850796:1	149054811	149059683	D	paired-like homeobox 2b [Source:HGNC Symbol;Acc:HGNC:9143]
ENSCJAG00000017341	KNOWN_BY_PROJECTION	protein_coding	WNT8B	chromosome:C_jacchus3.2.1:12:1:121768101:1	87720531	87748080	D	wingless-type MMTV integration site family, member 8B [Source:HGNC Symbol;Acc:HGNC:12789]
ENSCJAG00000019927	KNOWN	protein_coding	KANSL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	80205582	80415773	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042638}  [Source:UniProtKB/TrEMBL;Acc:F7ANI2]
ENSCJAG00000015874	NOVEL	protein_coding	ENSCJAG00000015874	chromosome:C_jacchus3.2.1:7:1:155834243:1	91431385	91432271	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029228}  [Source:UniProtKB/TrEMBL;Acc:F7HW43]
ENSCJAG00000015880	KNOWN	protein_coding	PPAP2B	chromosome:C_jacchus3.2.1:7:1:155834243:1	91716808	91804744	R	Lipid phosphate phosphohydrolase 3 {ECO:0000313|EMBL:JAB03435.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029244}  [Source:UniProtKB/TrEMBL;Acc:F7HLR6]
ENSCJAG00000009026	KNOWN	protein_coding	BRE	chromosome:C_jacchus3.2.1:14:1:108792865:1	80091432	80546790	R	BRCA1-A complex subunit BRE isoform 2 {ECO:0000313|EMBL:JAB06516.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016606}  [Source:UniProtKB/TrEMBL;Acc:F6YLX2]
ENSCJAG00000019896	KNOWN_BY_PROJECTION	protein_coding	AK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	171802215	171813604	R	adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]
ENSCJAG00000019933	NOVEL	pseudogene	ENSCJAG00000019933	chromosome:C_jacchus3.2.1:5:1:159171411:1	80383107	80383272	D	<no descrition>
ENSCJAG00000002879	NOVEL	pseudogene	ENSCJAG00000002879	chromosome:C_jacchus3.2.1:17:1:74750902:1	13774611	13775167	D	<no descrition>
ENSCJAG00000015889	KNOWN_BY_PROJECTION	protein_coding	PRKAA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	91868591	91932674	D	protein kinase, AMP-activated, alpha 2 catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9377]
ENSCJAG00000033945	NOVEL	protein_coding	ENSCJAG00000033945	chromosome:C_jacchus3.2.1:17:1:74750902:1	14774101	14778469	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045175}  [Source:UniProtKB/TrEMBL;Acc:F6RPB4]
ENSCJAG00000015907	KNOWN_BY_PROJECTION	protein_coding	C1orf168	chromosome:C_jacchus3.2.1:7:1:155834243:1	91942989	92054154	R	chromosome 1 open reading frame 168 [Source:HGNC Symbol;Acc:HGNC:27295]
ENSCJAG00000012369	KNOWN_BY_PROJECTION	protein_coding	TMEM63B	chromosome:C_jacchus3.2.1:4:1:171630274:1	45487586	45508137	D	transmembrane protein 63B [Source:HGNC Symbol;Acc:HGNC:17735]
ENSCJAG00000002861	KNOWN	protein_coding	RASGRP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120331419	120349979	R	RAS guanyl-releasing protein 2 {ECO:0000313|EMBL:JAB08892.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048446}  [Source:UniProtKB/TrEMBL;Acc:F7HIU6]
ENSCJAG00000015926	KNOWN_BY_PROJECTION	protein_coding	C8A	chromosome:C_jacchus3.2.1:7:1:155834243:1	92093272	92155274	D	complement component 8, alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:1352]
ENSCJAG00000019269	KNOWN	protein_coding	LIMCH1	chromosome:C_jacchus3.2.1:3:1:190850796:1	149104709	149458933	R	LIM and calponin homology domains-containing protein 1 isoform d {ECO:0000313|EMBL:JAB15894.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047173}  [Source:UniProtKB/TrEMBL;Acc:F7HP10]
ENSCJAG00000012346	KNOWN_BY_PROJECTION	protein_coding	CAPN11	chromosome:C_jacchus3.2.1:4:1:171630274:1	45517462	45540429	D	calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
ENSCJAG00000015932	KNOWN_BY_PROJECTION	protein_coding	C8B	chromosome:C_jacchus3.2.1:7:1:155834243:1	92166852	92204662	R	complement component 8, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:1353]
ENSCJAG00000019890	KNOWN	protein_coding	CDC27	chromosome:C_jacchus3.2.1:5:1:159171411:1	80436468	80510657	R	Cell division cycle protein 27 homolog isoform 1 {ECO:0000313|EMBL:JAB38454.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037042}  [Source:UniProtKB/TrEMBL;Acc:F6YJH8]
ENSCJAG00000021043	NOVEL	pseudogene	ENSCJAG00000021043	chromosome:C_jacchus3.2.1:10:1:132174527:1	41576278	41576567	R	<no descrition>
ENSCJAG00000021047	KNOWN_BY_PROJECTION	protein_coding	ACTC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	41589111	41596717	D	actin, alpha, cardiac muscle 1 [Source:HGNC Symbol;Acc:HGNC:143]
ENSCJAG00000019903	KNOWN_BY_PROJECTION	protein_coding	ST6GALNAC6	chromosome:C_jacchus3.2.1:1:1:210400635:1	171821470	171842856	R	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
ENSCJAG00000009065	KNOWN	protein_coding	RBKS	chromosome:C_jacchus3.2.1:14:1:108792865:1	80547122	80650969	D	Ribokinase {ECO:0000313|EMBL:JAB15406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050479}  [Source:UniProtKB/TrEMBL;Acc:F7H3K8]
ENSCJAG00000019908	KNOWN	protein_coding	ST6GALNAC4	chromosome:C_jacchus3.2.1:1:1:210400635:1	171845062	171852905	R	Alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase isoform a {ECO:0000313|EMBL:JAB08142.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037019}  [Source:UniProtKB/TrEMBL;Acc:F6ZK00]
ENSCJAG00000012328	KNOWN_BY_PROJECTION	protein_coding	SLC29A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	45583906	45597010	D	solute carrier family 29 (equilibrative nucleoside transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11003]
ENSCJAG00000015941	KNOWN_BY_PROJECTION	protein_coding	DAB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	92232604	92551004	R	Dab, reelin signal transducer, homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:2661]
ENSCJAG00000009098	NOVEL	protein_coding	ENSCJAG00000009098	chromosome:C_jacchus3.2.1:14:1:108792865:1	80652823	80661622	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016673}  [Source:UniProtKB/TrEMBL;Acc:F6VN59]
ENSCJAG00000009101	NOVEL	pseudogene	ENSCJAG00000009101	chromosome:C_jacchus3.2.1:14:1:108792865:1	80724158	80724737	D	<no descrition>
ENSCJAG00000009104	NOVEL	pseudogene	ENSCJAG00000009104	chromosome:C_jacchus3.2.1:14:1:108792865:1	80733186	80733677	R	<no descrition>
ENSCJAG00000002888	KNOWN_BY_PROJECTION	protein_coding	OTOL1	chromosome:C_jacchus3.2.1:17:1:74750902:1	15780513	15787960	R	otolin 1 [Source:HGNC Symbol;Acc:HGNC:34071]
ENSCJAG00000002894	NOVEL	pseudogene	ENSCJAG00000002894	chromosome:C_jacchus3.2.1:17:1:74750902:1	15912538	15913230	D	<no descrition>
ENSCJAG00000002899	NOVEL	protein_coding	ENSCJAG00000002899	chromosome:C_jacchus3.2.1:17:1:74750902:1	16046426	16047754	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005253}  [Source:UniProtKB/TrEMBL;Acc:F7I0R7]
ENSCJAG00000002836	KNOWN_BY_PROJECTION	protein_coding	PYGM	chromosome:C_jacchus3.2.1:11:1:130397257:1	120351180	120366423	R	phosphorylase, glycogen, muscle [Source:HGNC Symbol;Acc:HGNC:9726]
ENSCJAG00000009108	KNOWN_BY_PROJECTION	protein_coding	SLC4A1AP	chromosome:C_jacchus3.2.1:14:1:108792865:1	80737586	80768107	R	solute carrier family 4 (anion exchanger), member 1, adaptor protein [Source:HGNC Symbol;Acc:HGNC:13813]
ENSCJAG00000019915	KNOWN_BY_PROJECTION	protein_coding	PIP5KL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	171858852	171866222	R	phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:HGNC:28711]
ENSCJAG00000021050	KNOWN	protein_coding	GJD2	chromosome:C_jacchus3.2.1:10:1:132174527:1	41629961	41632083	D	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F7H014]
ENSCJAG00000015061	KNOWN	protein_coding	RIC8B	chromosome:C_jacchus3.2.1:9:1:124281992:1	96787853	96903004	D	Synembryn-B {ECO:0000313|EMBL:JAB07591.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027804}  [Source:UniProtKB/TrEMBL;Acc:F7GU04]
ENSCJAG00000019917	KNOWN_BY_PROJECTION	protein_coding	DPM2	chromosome:C_jacchus3.2.1:1:1:210400635:1	171871093	171873547	R	dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit [Source:HGNC Symbol;Acc:HGNC:3006]
ENSCJAG00000002900	KNOWN	protein_coding	NMD3	chromosome:C_jacchus3.2.1:17:1:74750902:1	16056076	16093098	R	60S ribosomal export protein NMD3 {ECO:0000313|EMBL:JAB08384.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051914}  [Source:UniProtKB/TrEMBL;Acc:F7BFU8]
ENSCJAG00000021054	KNOWN_BY_PROJECTION	protein_coding	ARHGAP11A	chromosome:C_jacchus3.2.1:10:1:132174527:1	41801872	41823156	D	Rho GTPase activating protein 11A [Source:HGNC Symbol;Acc:HGNC:15783]
ENSCJAG00000037906	NOVEL	protein_coding	ENSCJAG00000037906	chromosome:C_jacchus3.2.1:12:1:121768101:1	87771341	87793312	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031957}  [Source:UniProtKB/TrEMBL;Acc:F7HRN8]
ENSCJAG00000015744	KNOWN	protein_coding	CYP3A90	chromosome:C_jacchus3.2.1:2:1:204313951:1	12136779	12255654	D	Callithrix jacchus cytochrome P450, family 3, subfamily A, polypeptide 5 (CYP3A5), mRNA. [Source:RefSeq mRNA;Acc:NM_001204442]
ENSCJAG00000033802	NOVEL	protein_coding	ENSCJAG00000033802	chromosome:C_jacchus3.2.1:9:1:124281992:1	96920426	96921489	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045306}  [Source:UniProtKB/TrEMBL;Acc:F6U3Y4]
ENSCJAG00000019880	KNOWN_BY_PROJECTION	protein_coding	MYL4	chromosome:C_jacchus3.2.1:5:1:159171411:1	80530887	80546886	D	myosin, light chain 4, alkali; atrial, embryonic [Source:HGNC Symbol;Acc:HGNC:7585]
ENSCJAG00000017376	KNOWN	protein_coding	HIF1AN	chromosome:C_jacchus3.2.1:12:1:121768101:1	87798553	87816639	D	Hypoxia-inducible factor 1-alpha inhibitor {ECO:0000313|EMBL:JAB05524.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032028}  [Source:UniProtKB/TrEMBL;Acc:F7D3M0]
ENSCJAG00000009131	KNOWN	protein_coding	SUPT7L	chromosome:C_jacchus3.2.1:14:1:108792865:1	80767959	80781590	D	STAGA complex 65 subunit gamma {ECO:0000313|EMBL:JAB09831.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033946}  [Source:UniProtKB/TrEMBL;Acc:F6TCL1]
ENSCJAG00000002934	KNOWN	protein_coding	B3GALNT1	chromosome:C_jacchus3.2.1:17:1:74750902:1	16173892	16314323	D	UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 1 {ECO:0000313|EMBL:JAB09322.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049379}  [Source:UniProtKB/TrEMBL;Acc:F6XVE1]
ENSCJAG00000015090	KNOWN	protein_coding	TMEM263	chromosome:C_jacchus3.2.1:9:1:124281992:1	96968450	96983834	D	UPF0444 transmembrane protein C12orf23 {ECO:0000313|EMBL:JAB03412.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027809}  [Source:UniProtKB/TrEMBL;Acc:F7GTZ2]
ENSCJAG00000015094	KNOWN	protein_coding	MTERFD3	chromosome:C_jacchus3.2.1:9:1:124281992:1	96989051	96999188	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027814}; mTERF domain-containing protein 3, mitochondrial {ECO:0000313|EMBL:JAB08257.1}  [Source:UniProtKB/TrEMBL;Acc:F7GTV5]
ENSCJAG00000002780	KNOWN	protein_coding	SF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120370583	120385380	R	Splicing factor 1 isoform 2 {ECO:0000313|EMBL:JAB08746.1}; Splicing factor 1 isoform 2 (Predicted) {ECO:0000313|EMBL:ABY90099.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044970}  [Source:UniProtKB/TrEMBL;Acc:B0KWK3]
ENSCJAG00000002939	KNOWN_BY_PROJECTION	protein_coding	PPM1L	chromosome:C_jacchus3.2.1:17:1:74750902:1	16220914	16443406	R	protein phosphatase, Mg2+/Mn2+ dependent, 1L [Source:HGNC Symbol;Acc:HGNC:16381]
ENSCJAG00000012311	KNOWN_BY_PROJECTION	protein_coding	NFKBIE	chromosome:C_jacchus3.2.1:4:1:171630274:1	45625605	45633194	R	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon [Source:HGNC Symbol;Acc:HGNC:7799]
ENSCJAG00000022997	NOVEL	protein_coding	ENSCJAG00000022997	chromosome:C_jacchus3.2.1:7:1:155834243:1	92590908	92595101	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047417}  [Source:UniProtKB/TrEMBL;Acc:F7IMR7]
ENSCJAG00000015099	KNOWN	protein_coding	CRY1	chromosome:C_jacchus3.2.1:9:1:124281992:1	97005181	97123910	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027829}  [Source:UniProtKB/TrEMBL;Acc:F7GNS4]
ENSCJAG00000016000	KNOWN	protein_coding	OMA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	93776000	93842844	R	Metalloendopeptidase OMA1, mitochondrial {ECO:0000313|EMBL:JAB06514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029461}  [Source:UniProtKB/TrEMBL;Acc:F7IRJ9]
ENSCJAG00000016013	NOVEL	protein_coding	ENSCJAG00000016013	chromosome:C_jacchus3.2.1:7:1:155834243:1	93780510	93782235	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029467}  [Source:UniProtKB/TrEMBL;Acc:F7IRJ0]
ENSCJAG00000016017	NOVEL	pseudogene	ENSCJAG00000016017	chromosome:C_jacchus3.2.1:7:1:155834243:1	93870381	93871343	R	<no descrition>
ENSCJAG00000019861	KNOWN	protein_coding	ITGB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	80576917	80638135	D	Integrin beta {ECO:0000256|RuleBase:RU000633}  [Source:UniProtKB/TrEMBL;Acc:F6QIM6]
ENSCJAG00000016020	KNOWN	protein_coding	MYSM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	93937556	93977093	R	Histone H2A deubiquitinase MYSM1 {ECO:0000313|EMBL:JAB10600.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029506}  [Source:UniProtKB/TrEMBL;Acc:F7IJE5]
ENSCJAG00000019920	KNOWN_BY_PROJECTION	protein_coding	FAM102A	chromosome:C_jacchus3.2.1:1:1:210400635:1	171879369	171915338	R	family with sequence similarity 102, member A [Source:HGNC Symbol;Acc:HGNC:31419]
ENSCJAG00000002943	KNOWN_BY_PROJECTION	protein_coding	ARL14	chromosome:C_jacchus3.2.1:17:1:74750902:1	16636676	16638003	R	ADP-ribosylation factor-like 14 [Source:HGNC Symbol;Acc:HGNC:22974]
ENSCJAG00000002946	NOVEL	protein_coding	ENSCJAG00000002946	chromosome:C_jacchus3.2.1:17:1:74750902:1	16766976	16769113	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005328}  [Source:UniProtKB/TrEMBL;Acc:F7ILV2]
ENSCJAG00000016041	NOVEL	pseudogene	ENSCJAG00000016041	chromosome:C_jacchus3.2.1:7:1:155834243:1	94054320	94055324	R	<no descrition>
ENSCJAG00000017397	KNOWN_BY_PROJECTION	protein_coding	PAX2	chromosome:C_jacchus3.2.1:12:1:121768101:1	88015299	88099942	D	paired box 2 [Source:HGNC Symbol;Acc:HGNC:8616]
ENSCJAG00000019895	KNOWN	protein_coding	NAIF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	171998080	172001307	R	Nuclear apoptosis-inducing factor 1 {ECO:0000313|EMBL:JAB02895.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036984}  [Source:UniProtKB/TrEMBL;Acc:F6Q6R2]
ENSCJAG00000019924	KNOWN	protein_coding	SLC25A25	chromosome:C_jacchus3.2.1:1:1:210400635:1	172002497	172043756	D	Calcium-binding mitochondrial carrier protein SCaMC-2 isoform b {ECO:0000313|EMBL:JAB49446.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037049}  [Source:UniProtKB/TrEMBL;Acc:F6YJ93]
ENSCJAG00000017425	KNOWN	protein_coding	FAM178A	chromosome:C_jacchus3.2.1:12:1:121768101:1	88188212	88249031	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032145}  [Source:UniProtKB/TrEMBL;Acc:F7GKU1]
ENSCJAG00000016043	KNOWN	protein_coding	FGGY	chromosome:C_jacchus3.2.1:7:1:155834243:1	94569055	95021953	D	FGGY carbohydrate kinase domain-containing protein isoform b {ECO:0000313|EMBL:JAB10719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029579}  [Source:UniProtKB/TrEMBL;Acc:F7I7K0]
ENSCJAG00000002947	KNOWN	protein_coding	KPNA4	chromosome:C_jacchus3.2.1:17:1:74750902:1	16770763	16835924	D	Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673}  [Source:UniProtKB/TrEMBL;Acc:F6VIF8]
ENSCJAG00000019932	KNOWN	protein_coding	PTGES2	chromosome:C_jacchus3.2.1:1:1:210400635:1	172054508	172062112	R	Prostaglandin E synthase 2 isoform 1 {ECO:0000313|EMBL:JAB08267.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037053}  [Source:UniProtKB/TrEMBL;Acc:F6XZ70]
ENSCJAG00000009180	KNOWN	protein_coding	ZNF512	chromosome:C_jacchus3.2.1:14:1:108792865:1	80781558	80859394	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030382}  [Source:UniProtKB/TrEMBL;Acc:F6V6Y1]
ENSCJAG00000015783	KNOWN	protein_coding	ZSCAN25	chromosome:C_jacchus3.2.1:2:1:204313951:1	12291163	12301735	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029055}; Zinc finger protein 498 {ECO:0000313|EMBL:JAB09151.1}  [Source:UniProtKB/TrEMBL;Acc:F7IRV2]
ENSCJAG00000033315	NOVEL	protein_coding	ENSCJAG00000033315	chromosome:C_jacchus3.2.1:2:1:204313951:1	12318021	12323792	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045300}  [Source:UniProtKB/TrEMBL;Acc:F6U479]
ENSCJAG00000019934	NOVEL	pseudogene	ENSCJAG00000019934	chromosome:C_jacchus3.2.1:1:1:210400635:1	172062244	172062860	D	<no descrition>
ENSCJAG00000037104	NOVEL	protein_coding	ENSCJAG00000037104	chromosome:C_jacchus3.2.1:5:1:159171411:1	80649659	80765764	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036910}  [Source:UniProtKB/TrEMBL;Acc:F6RE49]
ENSCJAG00000032195	KNOWN_BY_PROJECTION	protein_coding	ZNF655	chromosome:C_jacchus3.2.1:2:1:204313951:1	12345736	12362821	R	zinc finger protein 655 [Source:HGNC Symbol;Acc:HGNC:30899]
ENSCJAG00000019936	KNOWN	protein_coding	LCN2	chromosome:C_jacchus3.2.1:1:1:210400635:1	172079274	172083928	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037071}  [Source:UniProtKB/TrEMBL;Acc:F6XAF3]
ENSCJAG00000015118	KNOWN_BY_PROJECTION	protein_coding	BTBD11	chromosome:C_jacchus3.2.1:9:1:124281992:1	97582959	97734036	D	BTB (POZ) domain containing 11 [Source:HGNC Symbol;Acc:HGNC:23844]
ENSCJAG00000036226	NOVEL	pseudogene	ENSCJAG00000036226	chromosome:C_jacchus3.2.1:17:1:74750902:1	16834226	16835919	D	<no descrition>
ENSCJAG00000002967	NOVEL	pseudogene	ENSCJAG00000002967	chromosome:C_jacchus3.2.1:17:1:74750902:1	16874015	16874459	D	<no descrition>
ENSCJAG00000002730	KNOWN	protein_coding	MAP4K2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120394561	120411966	R	Mitogen-activated protein kinase kinase kinase kinase {ECO:0000256|PIRNR:PIRNR038172}  [Source:UniProtKB/TrEMBL;Acc:F7BV79]
ENSCJAG00000012307	KNOWN_BY_PROJECTION	protein_coding	TMEM151B	chromosome:C_jacchus3.2.1:4:1:171630274:1	45640742	45647184	D	transmembrane protein 151B [Source:HGNC Symbol;Acc:HGNC:21315]
ENSCJAG00000012297	KNOWN_BY_PROJECTION	protein_coding	TCTE1	chromosome:C_jacchus3.2.1:4:1:171630274:1	45648392	45656208	R	t-complex-associated-testis-expressed 1 [Source:HGNC Symbol;Acc:HGNC:11693]
ENSCJAG00000016077	KNOWN	protein_coding	HOOK1	chromosome:C_jacchus3.2.1:7:1:155834243:1	95067574	95128637	D	Protein Hook homolog 1 {ECO:0000313|EMBL:JAB09642.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044264}  [Source:UniProtKB/TrEMBL;Acc:F7D318]
ENSCJAG00000003036	NOVEL	protein_coding	ENSCJAG00000003036	chromosome:C_jacchus3.2.1:17:1:74750902:1	16875379	17069026	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043232}  [Source:UniProtKB/TrEMBL;Acc:F7ICN3]
ENSCJAG00000012267	KNOWN_BY_PROJECTION	protein_coding	SPATS1	chromosome:C_jacchus3.2.1:4:1:171630274:1	45707098	45738598	D	spermatogenesis associated, serine-rich 1 [Source:HGNC Symbol;Acc:HGNC:22957]
ENSCJAG00000017458	KNOWN_BY_PROJECTION	protein_coding	SEMA4G	chromosome:C_jacchus3.2.1:12:1:121768101:1	88257561	88279357	D	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
ENSCJAG00000019946	KNOWN	protein_coding	C1H9ORF16	chromosome:C_jacchus3.2.1:1:1:210400635:1	172091954	172095591	D	UPF0184 protein C9orf16 {ECO:0000313|EMBL:JAB06922.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037092}  [Source:UniProtKB/TrEMBL;Acc:F6WNN5]
ENSCJAG00000021060	KNOWN	protein_coding	SCG5	chromosome:C_jacchus3.2.1:10:1:132174527:1	41826524	41879052	D	Neuroendocrine protein 7B2 isoform 1 {ECO:0000313|EMBL:JAB03182.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039195}  [Source:UniProtKB/TrEMBL;Acc:F7GV17]
ENSCJAG00000012255	NOVEL	pseudogene	ENSCJAG00000012255	chromosome:C_jacchus3.2.1:4:1:171630274:1	45739316	45740874	R	<no descrition>
ENSCJAG00000019342	NOVEL	protein_coding	ENSCJAG00000019342	chromosome:C_jacchus3.2.1:3:1:190850796:1	149500853	149502766	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035911}  [Source:UniProtKB/TrEMBL;Acc:F7FZ25]
ENSCJAG00000023140	KNOWN	protein_coding	FAM200A	chromosome:C_jacchus3.2.1:2:1:204313951:1	12368525	12373349	D	Protein FAM200A {ECO:0000313|EMBL:JAB08214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041668}  [Source:UniProtKB/TrEMBL;Acc:F7HAD2]
ENSCJAG00000037483	NOVEL	protein_coding	ENSCJAG00000037483	chromosome:C_jacchus3.2.1:5:1:159171411:1	80651903	80754795	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036905}  [Source:UniProtKB/TrEMBL;Acc:F6RET4]
ENSCJAG00000012210	KNOWN	protein_coding	CDC5L	chromosome:C_jacchus3.2.1:4:1:171630274:1	45753004	45812621	D	Cell division cycle 5-like protein {ECO:0000313|EMBL:JAB07571.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022454}  [Source:UniProtKB/TrEMBL;Acc:F7ISF5]
ENSCJAG00000019346	KNOWN	protein_coding	UCHL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	149562172	149572709	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035931}  [Source:UniProtKB/TrEMBL;Acc:F7F7P4]
ENSCJAG00000015788	KNOWN	protein_coding	ZKSCAN5	chromosome:C_jacchus3.2.1:2:1:204313951:1	12384143	12413659	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029094}; Zinc finger protein with KRAB and SCAN domains 5 {ECO:0000313|EMBL:JAB16866.1}  [Source:UniProtKB/TrEMBL;Acc:F7IM41]
ENSCJAG00000015808	KNOWN	protein_coding	ZNF394	chromosome:C_jacchus3.2.1:2:1:204313951:1	12419199	12427644	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029104}; Zinc finger protein 394 {ECO:0000313|EMBL:JAB09177.1}  [Source:UniProtKB/TrEMBL;Acc:F7IHF0]
ENSCJAG00000019846	KNOWN_BY_PROJECTION	protein_coding	EFCAB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	81053676	81103603	D	EF-hand calcium binding domain 3 [Source:HGNC Symbol;Acc:HGNC:26379]
ENSCJAG00000021062	NOVEL	pseudogene	ENSCJAG00000021062	chromosome:C_jacchus3.2.1:10:1:132174527:1	41880301	41880699	D	<no descrition>
ENSCJAG00000015813	KNOWN	protein_coding	ZNF789	chromosome:C_jacchus3.2.1:2:1:204313951:1	12435039	12451033	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029119}; Zinc finger protein 789 isoform 1 {ECO:0000313|EMBL:JAB36907.1}  [Source:UniProtKB/TrEMBL;Acc:F7IF26]
ENSCJAG00000021064	KNOWN	protein_coding	GREM1	chromosome:C_jacchus3.2.1:10:1:132174527:1	41902081	41916256	D	Gremlin-1 isoform 1 {ECO:0000313|EMBL:JAB51278.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045604}  [Source:UniProtKB/TrEMBL;Acc:F6R9I8]
ENSCJAG00000019851	NOVEL	pseudogene	ENSCJAG00000019851	chromosome:C_jacchus3.2.1:5:1:159171411:1	81064615	81064951	D	<no descrition>
ENSCJAG00000019363	KNOWN	protein_coding	APBB2	chromosome:C_jacchus3.2.1:3:1:190850796:1	149634028	150058503	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035984}  [Source:UniProtKB/TrEMBL;Acc:F7E1W3]
ENSCJAG00000009177	KNOWN	protein_coding	CCDC121	chromosome:C_jacchus3.2.1:14:1:108792865:1	80804569	80806355	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016808}  [Source:UniProtKB/TrEMBL;Acc:F6YKJ1]
ENSCJAG00000033545	KNOWN	protein_coding	METTL2B	chromosome:C_jacchus3.2.1:5:1:159171411:1	81110778	81130030	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048163}  [Source:UniProtKB/TrEMBL;Acc:F7H3J4]
ENSCJAG00000000899	NOVEL	protein_coding	ENSCJAG00000000899	chromosome:C_jacchus3.2.1:14:1:108792865:1	80920115	80945184	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001541}  [Source:UniProtKB/TrEMBL;Acc:F6ZY33]
ENSCJAG00000015815	NOVEL	protein_coding	ENSCJAG00000015815	chromosome:C_jacchus3.2.1:2:1:204313951:1	12464688	12506404	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029142}  [Source:UniProtKB/TrEMBL;Acc:F7IAC7]
ENSCJAG00000002970	NOVEL	pseudogene	ENSCJAG00000002970	chromosome:C_jacchus3.2.1:17:1:74750902:1	16882704	16883422	D	<no descrition>
ENSCJAG00000036867	NOVEL	pseudogene	ENSCJAG00000036867	chromosome:C_jacchus3.2.1:5:1:159171411:1	81129772	81130628	D	<no descrition>
ENSCJAG00000021066	NOVEL	pseudogene	ENSCJAG00000021066	chromosome:C_jacchus3.2.1:10:1:132174527:1	41921275	41921710	R	<no descrition>
ENSCJAG00000017480	KNOWN_BY_PROJECTION	protein_coding	MRPL43	chromosome:C_jacchus3.2.1:12:1:121768101:1	88267712	88281259	R	mitochondrial ribosomal protein L43 [Source:HGNC Symbol;Acc:HGNC:14517]
ENSCJAG00000021067	KNOWN_BY_PROJECTION	protein_coding	FMN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	41965218	42375915	R	formin 1 [Source:HGNC Symbol;Acc:HGNC:3768]
ENSCJAG00000016130	KNOWN_BY_PROJECTION	protein_coding	CYP2J2	chromosome:C_jacchus3.2.1:7:1:155834243:1	95148566	95177638	R	cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
ENSCJAG00000002974	KNOWN_BY_PROJECTION	protein_coding	SMC4	chromosome:C_jacchus3.2.1:17:1:74750902:1	16890019	16926352	R	structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]
ENSCJAG00000000912	NOVEL	protein_coding	ENSCJAG00000000912	chromosome:C_jacchus3.2.1:14:1:108792865:1	80946830	80950180	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046475}  [Source:UniProtKB/TrEMBL;Acc:F7IK88]
ENSCJAG00000015826	KNOWN	protein_coding	CPSF4	chromosome:C_jacchus3.2.1:2:1:204313951:1	12474236	12486442	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029160}  [Source:UniProtKB/TrEMBL;Acc:F7I7Y0]
ENSCJAG00000015836	NOVEL	protein_coding	ENSCJAG00000015836	chromosome:C_jacchus3.2.1:2:1:204313951:1	12506499	12515302	R	<no descrition>
ENSCJAG00000015838	KNOWN	protein_coding	PDAP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	12517920	12574017	D	28 kDa heat-and acid-stable phosphoprotein {ECO:0000313|EMBL:JAB04394.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029182}  [Source:UniProtKB/TrEMBL;Acc:F7I5I7]
ENSCJAG00000015164	KNOWN	protein_coding	PWP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	97760352	97784313	D	Periodic tryptophan protein 1 homolog {ECO:0000313|EMBL:JAB04358.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028109}  [Source:UniProtKB/TrEMBL;Acc:F7C6H3]
ENSCJAG00000012182	KNOWN_BY_PROJECTION	protein_coding	SUPT3H	chromosome:C_jacchus3.2.1:4:1:171630274:1	46202732	46733044	R	suppressor of Ty 3 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:11466]
ENSCJAG00000019948	KNOWN_BY_PROJECTION	protein_coding	CIZ1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172097557	172174425	R	CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
ENSCJAG00000016137	KNOWN	protein_coding	C1ORF87	chromosome:C_jacchus3.2.1:7:1:155834243:1	95240417	95323917	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029729}; Uncharacterized protein C1orf87 {ECO:0000313|EMBL:JAB02482.1}  [Source:UniProtKB/TrEMBL;Acc:F7I9U9]
ENSCJAG00000015848	KNOWN_BY_PROJECTION	protein_coding	HIVEP3	chromosome:C_jacchus3.2.1:2:1:204313951:1	12539504	12549063	D	human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
ENSCJAG00000000921	KNOWN_BY_PROJECTION	protein_coding	IFT172	chromosome:C_jacchus3.2.1:14:1:108792865:1	80957509	80998924	D	intraflagellar transport 172 [Source:HGNC Symbol;Acc:HGNC:30391]
ENSCJAG00000015849	KNOWN	protein_coding	ARPC1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	12575329	12599052	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029194}  [Source:UniProtKB/TrEMBL;Acc:F7I384]
ENSCJAG00000019827	KNOWN_BY_PROJECTION	protein_coding	TLK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	81153450	81307579	D	tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
ENSCJAG00000017487	KNOWN	protein_coding	C10ORF2	chromosome:C_jacchus3.2.1:12:1:121768101:1	88281304	88287482	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032213}  [Source:UniProtKB/TrEMBL;Acc:F7ET10]
ENSCJAG00000021073	NOVEL	protein_coding	ENSCJAG00000021073	chromosome:C_jacchus3.2.1:10:1:132174527:1	42198608	42199645	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050568}  [Source:UniProtKB/TrEMBL;Acc:F7E5X1]
ENSCJAG00000019381	KNOWN_BY_PROJECTION	protein_coding	NSUN7	chromosome:C_jacchus3.2.1:3:1:190850796:1	150063070	150117570	R	NOP2/Sun domain family, member 7 [Source:HGNC Symbol;Acc:HGNC:25857]
ENSCJAG00000003058	NOVEL	protein_coding	ENSCJAG00000003058	chromosome:C_jacchus3.2.1:17:1:74750902:1	16988491	16989338	R	60S ribosomal protein L6 {ECO:0000256|RuleBase:RU000662}  [Source:UniProtKB/TrEMBL;Acc:F7IJH2]
ENSCJAG00000021074	NOVEL	protein_coding	ENSCJAG00000021074	chromosome:C_jacchus3.2.1:10:1:132174527:1	42415345	42426570	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039217}  [Source:UniProtKB/TrEMBL;Acc:F7G682]
ENSCJAG00000016162	NOVEL	pseudogene	ENSCJAG00000016162	chromosome:C_jacchus3.2.1:7:1:155834243:1	95560522	95561364	D	<no descrition>
ENSCJAG00000003061	NOVEL	protein_coding	ENSCJAG00000003061	chromosome:C_jacchus3.2.1:17:1:74750902:1	17071683	17074330	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005547}  [Source:UniProtKB/TrEMBL;Acc:F7IJG9]
ENSCJAG00000003063	NOVEL	pseudogene	ENSCJAG00000003063	chromosome:C_jacchus3.2.1:17:1:74750902:1	17095925	17096192	R	<no descrition>
ENSCJAG00000016183	NOVEL	pseudogene	ENSCJAG00000016183	chromosome:C_jacchus3.2.1:7:1:155834243:1	96242612	96243212	D	<no descrition>
ENSCJAG00000032416	NOVEL	protein_coding	ENSCJAG00000032416	chromosome:C_jacchus3.2.1:17:1:74750902:1	17179009	17180764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048470}  [Source:UniProtKB/TrEMBL;Acc:F7HDD9]
ENSCJAG00000012195	NOVEL	protein_coding	ENSCJAG00000012195	chromosome:C_jacchus3.2.1:4:1:171630274:1	46475591	46476830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022385}  [Source:UniProtKB/TrEMBL;Acc:F6XLK7]
ENSCJAG00000000431	KNOWN_BY_PROJECTION	protein_coding	IL12A	chromosome:C_jacchus3.2.1:17:1:74750902:1	17362433	17371773	R	interleukin 12A [Source:HGNC Symbol;Acc:HGNC:5969]
ENSCJAG00000016165	KNOWN	protein_coding	NFIA	chromosome:C_jacchus3.2.1:7:1:155834243:1	96401299	96793068	D	Nuclear factor 1 {ECO:0000256|RuleBase:RU000690}  [Source:UniProtKB/TrEMBL;Acc:F7I549]
ENSCJAG00000035611	KNOWN_BY_PROJECTION	protein_coding	RYR3	chromosome:C_jacchus3.2.1:10:1:132174527:1	42832615	43018116	D	ryanodine receptor 3 [Source:HGNC Symbol;Acc:HGNC:10485]
ENSCJAG00000017496	KNOWN_BY_PROJECTION	protein_coding	LZTS2	chromosome:C_jacchus3.2.1:12:1:121768101:1	88290004	88300998	D	leucine zipper, putative tumor suppressor 2 [Source:HGNC Symbol;Acc:HGNC:29381]
ENSCJAG00000002716	KNOWN_BY_PROJECTION	protein_coding	MEN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120413074	120417174	R	multiple endocrine neoplasia I [Source:HGNC Symbol;Acc:HGNC:7010]
ENSCJAG00000017509	NOVEL	protein_coding	ENSCJAG00000017509	chromosome:C_jacchus3.2.1:12:1:121768101:1	88301638	88305597	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032250}  [Source:UniProtKB/TrEMBL;Acc:F7E128]
ENSCJAG00000012153	KNOWN_BY_PROJECTION	protein_coding	RUNX2	chromosome:C_jacchus3.2.1:4:1:171630274:1	46776992	46904835	D	runt-related transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:10472]
ENSCJAG00000031296	NOVEL	pseudogene	ENSCJAG00000031296	chromosome:C_jacchus3.2.1:4:1:171630274:1	46944948	46945274	R	<no descrition>
ENSCJAG00000019385	NOVEL	protein_coding	ENSCJAG00000019385	chromosome:C_jacchus3.2.1:3:1:190850796:1	150244041	150454916	D	<no descrition>
ENSCJAG00000012123	KNOWN_BY_PROJECTION	protein_coding	CLIC5	chromosome:C_jacchus3.2.1:4:1:171630274:1	47274804	47457432	R	chloride intracellular channel 5 [Source:HGNC Symbol;Acc:HGNC:13517]
ENSCJAG00000002669	KNOWN_BY_PROJECTION	protein_coding	CDC42BPG	chromosome:C_jacchus3.2.1:11:1:130397257:1	120437072	120457335	R	CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
ENSCJAG00000000942	KNOWN	protein_coding	KRTCAP3	chromosome:C_jacchus3.2.1:14:1:108792865:1	80999053	81000975	R	Keratinocyte-associated protein 3 {ECO:0000313|EMBL:JAB02231.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001610}  [Source:UniProtKB/TrEMBL;Acc:F6USM6]
ENSCJAG00000017518	KNOWN_BY_PROJECTION	protein_coding	PDZD7	chromosome:C_jacchus3.2.1:12:1:121768101:1	88311820	88324884	R	PDZ domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26257]
ENSCJAG00000019796	KNOWN	protein_coding	MRC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	81315598	81375075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036837}  [Source:UniProtKB/TrEMBL;Acc:F6TKD4]
ENSCJAG00000021101	KNOWN_BY_PROJECTION	protein_coding	AVEN	chromosome:C_jacchus3.2.1:10:1:132174527:1	43098201	43293175	R	apoptosis, caspase activation inhibitor [Source:HGNC Symbol;Acc:HGNC:13509]
ENSCJAG00000016186	KNOWN_BY_PROJECTION	protein_coding	INADL	chromosome:C_jacchus3.2.1:7:1:155834243:1	97036981	97455013	D	InaD-like (Drosophila) [Source:HGNC Symbol;Acc:HGNC:28881]
ENSCJAG00000017527	KNOWN_BY_PROJECTION	protein_coding	SFXN3	chromosome:C_jacchus3.2.1:12:1:121768101:1	88325000	88335862	D	sideroflexin 3 [Source:HGNC Symbol;Acc:HGNC:16087]
ENSCJAG00000002660	KNOWN	protein_coding	EHD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120465883	120494178	R	EH domain-containing protein 1 {ECO:0000313|EMBL:JAB09734.1}; EH-domain containing 1 (Predicted) {ECO:0000313|EMBL:ABY90103.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042459}  [Source:UniProtKB/TrEMBL;Acc:B0KWK7]
ENSCJAG00000019397	KNOWN_BY_PROJECTION	protein_coding	CHRNA9	chromosome:C_jacchus3.2.1:3:1:190850796:1	150519240	150543789	R	cholinergic receptor, nicotinic, alpha 9 (neuronal) [Source:HGNC Symbol;Acc:HGNC:14079]
ENSCJAG00000019407	KNOWN_BY_PROJECTION	protein_coding	RHOH	chromosome:C_jacchus3.2.1:3:1:190850796:1	150652976	150654064	R	ras homolog family member H [Source:HGNC Symbol;Acc:HGNC:686]
ENSCJAG00000017554	KNOWN_BY_PROJECTION	protein_coding	KAZALD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	88358352	88362710	D	Kazal-type serine peptidase inhibitor domain 1 [Source:HGNC Symbol;Acc:HGNC:25460]
ENSCJAG00000002667	NOVEL	pseudogene	ENSCJAG00000002667	chromosome:C_jacchus3.2.1:11:1:130397257:1	120479219	120479826	D	<no descrition>
ENSCJAG00000019411	KNOWN_BY_PROJECTION	protein_coding	N4BP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	150741622	150827705	R	NEDD4 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29851]
ENSCJAG00000000946	KNOWN	protein_coding	NRBP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	81001087	81016587	R	Nuclear receptor-binding protein {ECO:0000313|EMBL:JAB04342.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001657}  [Source:UniProtKB/TrEMBL;Acc:F7CSH8]
ENSCJAG00000015261	KNOWN_BY_PROJECTION	protein_coding	PRDM4	chromosome:C_jacchus3.2.1:9:1:124281992:1	97815486	97844771	R	PR domain containing 4 [Source:HGNC Symbol;Acc:HGNC:9348]
ENSCJAG00000002632	NOVEL	protein_coding	ATG2A_1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120509715	120531382	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047820}  [Source:UniProtKB/TrEMBL;Acc:F7H2H6]
ENSCJAG00000000416	KNOWN	protein_coding	IQCJ-SCHIP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	17478791	17619705	R	Schwannomin-interacting protein 1 isoform 4 {ECO:0000313|EMBL:JAB17347.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000720}  [Source:UniProtKB/TrEMBL;Acc:F6SE68]
ENSCJAG00000015859	KNOWN	protein_coding	ARPC1A	chromosome:C_jacchus3.2.1:2:1:204313951:1	12607110	12648238	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029276}  [Source:UniProtKB/TrEMBL;Acc:F7IPA3]
ENSCJAG00000017563	KNOWN_BY_PROJECTION	protein_coding	TLX1	chromosome:C_jacchus3.2.1:12:1:121768101:1	88430679	88437885	D	T-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:HGNC:5056]
ENSCJAG00000000430	NOVEL	protein_coding	ENSCJAG00000000430	chromosome:C_jacchus3.2.1:17:1:74750902:1	17918635	17921564	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000729}  [Source:UniProtKB/TrEMBL;Acc:F6SE13]
ENSCJAG00000000429	NOVEL	protein_coding	ENSCJAG00000000429	chromosome:C_jacchus3.2.1:17:1:74750902:1	17986414	17986846	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000728}  [Source:UniProtKB/TrEMBL;Acc:F6SE20]
ENSCJAG00000017569	KNOWN	protein_coding	LBX1	chromosome:C_jacchus3.2.1:12:1:121768101:1	88524250	88526224	R	Transcription factor LBX1 {ECO:0000313|EMBL:JAB41243.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032372}  [Source:UniProtKB/TrEMBL;Acc:F7FXK8]
ENSCJAG00000023282	KNOWN_BY_PROJECTION	protein_coding	CHRM5	chromosome:C_jacchus3.2.1:10:1:132174527:1	43212854	43308065	D	cholinergic receptor, muscarinic 5 [Source:HGNC Symbol;Acc:HGNC:1954]
ENSCJAG00000000412	KNOWN_BY_PROJECTION	protein_coding	IQCJ	chromosome:C_jacchus3.2.1:17:1:74750902:1	18113259	18303659	R	IQ motif containing J [Source:HGNC Symbol;Acc:HGNC:32406]
ENSCJAG00000021103	KNOWN_BY_PROJECTION	protein_coding	EMC7	chromosome:C_jacchus3.2.1:10:1:132174527:1	43322063	43341846	R	ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
ENSCJAG00000000410	NOVEL	protein_coding	ENSCJAG00000000410	chromosome:C_jacchus3.2.1:17:1:74750902:1	18557376	18558764	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000698}  [Source:UniProtKB/TrEMBL;Acc:F6U919]
ENSCJAG00000017573	KNOWN	protein_coding	BTRC	chromosome:C_jacchus3.2.1:12:1:121768101:1	88659555	88859652	D	F-box/WD repeat-containing protein 1A isoform 2 {ECO:0000313|EMBL:JAB28496.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032401}  [Source:UniProtKB/TrEMBL;Acc:F7ESF5]
ENSCJAG00000036020	NOVEL	pseudogene	ENSCJAG00000036020	chromosome:C_jacchus3.2.1:4:1:171630274:1	47274804	47276312	R	<no descrition>
ENSCJAG00000012114	KNOWN	protein_coding	ENPP4	chromosome:C_jacchus3.2.1:4:1:171630274:1	47516621	47528994	D	Ectonucleotide pyrophosphatase/phosphodiesterase family member 4 {ECO:0000313|EMBL:JAB07327.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022239}  [Source:UniProtKB/TrEMBL;Acc:F7CPZ5]
ENSCJAG00000012084	KNOWN	protein_coding	RCAN2	chromosome:C_jacchus3.2.1:4:1:171630274:1	47542263	47741615	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022185}  [Source:UniProtKB/TrEMBL;Acc:F6WEG6]
ENSCJAG00000021108	NOVEL	pseudogene	ENSCJAG00000021108	chromosome:C_jacchus3.2.1:10:1:132174527:1	43323738	43324125	R	<no descrition>
ENSCJAG00000023283	KNOWN_BY_PROJECTION	protein_coding	PGBD4	chromosome:C_jacchus3.2.1:10:1:132174527:1	43342051	43344263	D	piggyBac transposable element derived 4 [Source:HGNC Symbol;Acc:HGNC:19401]
ENSCJAG00000019427	NOVEL	pseudogene	ENSCJAG00000019427	chromosome:C_jacchus3.2.1:3:1:190850796:1	150930170	150930569	D	<no descrition>
ENSCJAG00000015910	NOVEL	protein_coding	ENSCJAG00000015910	chromosome:C_jacchus3.2.1:2:1:204313951:1	12668180	12747068	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029344}  [Source:UniProtKB/TrEMBL;Acc:F7IA55]
ENSCJAG00000015301	NOVEL	pseudogene	ENSCJAG00000015301	chromosome:C_jacchus3.2.1:9:1:124281992:1	97858892	97861129	D	<no descrition>
ENSCJAG00000012097	KNOWN	protein_coding	ENPP5	chromosome:C_jacchus3.2.1:4:1:171630274:1	47542695	47552832	R	Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 {ECO:0000313|EMBL:JAB29054.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022224}  [Source:UniProtKB/TrEMBL;Acc:F6UN08]
ENSCJAG00000019967	KNOWN_BY_PROJECTION	protein_coding	DNM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172136750	172189492	D	dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
ENSCJAG00000021110	KNOWN	protein_coding	ENSCJAG00000021110	chromosome:C_jacchus3.2.1:10:1:132174527:1	43380346	43438129	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039292}; Uncharacterized protein C15orf29 {ECO:0000313|EMBL:JAB08119.1}  [Source:UniProtKB/TrEMBL;Acc:F7F188]
ENSCJAG00000000395	KNOWN_BY_PROJECTION	protein_coding	MFSD1	chromosome:C_jacchus3.2.1:17:1:74750902:1	18569072	18593891	R	major facilitator superfamily domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25874]
ENSCJAG00000031592	NOVEL	protein_coding	ENSCJAG00000031592	chromosome:C_jacchus3.2.1:7:1:155834243:1	97265087	97322951	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003790}  [Source:UniProtKB/TrEMBL;Acc:F7DCL7]
ENSCJAG00000016271	NOVEL	protein_coding	ENSCJAG00000016271	chromosome:C_jacchus3.2.1:7:1:155834243:1	97458865	97459261	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029941}  [Source:UniProtKB/TrEMBL;Acc:F7I7D6]
ENSCJAG00000032214	NOVEL	pseudogene	ENSCJAG00000032214	chromosome:C_jacchus3.2.1:7:1:155834243:1	97516804	97517777	R	<no descrition>
ENSCJAG00000012072	KNOWN	protein_coding	CYP39A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	47980718	48082185	R	24-hydroxycholesterol 7-alpha-hydroxylase {ECO:0000313|EMBL:JAB05393.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022167}  [Source:UniProtKB/TrEMBL;Acc:F6X0Z7]
ENSCJAG00000019428	KNOWN	protein_coding	PDS5A	chromosome:C_jacchus3.2.1:3:1:190850796:1	150931685	151093299	D	Sister chromatid cohesion protein PDS5 homolog A isoform 1 {ECO:0000313|EMBL:JAB19771.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036119}  [Source:UniProtKB/TrEMBL;Acc:F7DQY3]
ENSCJAG00000016275	KNOWN_BY_PROJECTION	protein_coding	KANK4	chromosome:C_jacchus3.2.1:7:1:155834243:1	97520248	97619644	R	KN motif and ankyrin repeat domains 4 [Source:HGNC Symbol;Acc:HGNC:27263]
ENSCJAG00000016287	KNOWN	protein_coding	USP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	97767133	97782105	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7HWE7]
ENSCJAG00000000975	KNOWN	protein_coding	PPM1G	chromosome:C_jacchus3.2.1:14:1:108792865:1	81035126	81062885	D	Protein phosphatase 1G {ECO:0000313|EMBL:JAB07007.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001676}  [Source:UniProtKB/TrEMBL;Acc:F7BY62]
ENSCJAG00000015943	KNOWN_BY_PROJECTION	protein_coding	KPNA7	chromosome:C_jacchus3.2.1:2:1:204313951:1	12789308	12823828	D	karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:HGNC:21839]
ENSCJAG00000019792	KNOWN_BY_PROJECTION	protein_coding	MARCH10	chromosome:C_jacchus3.2.1:5:1:159171411:1	81381967	81497733	R	membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:26655]
ENSCJAG00000015302	NOVEL	pseudogene	ENSCJAG00000015302	chromosome:C_jacchus3.2.1:9:1:124281992:1	97880526	97882511	D	<no descrition>
ENSCJAG00000015306	NOVEL	protein_coding	ENSCJAG00000015306	chromosome:C_jacchus3.2.1:9:1:124281992:1	97925607	97929987	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028177}  [Source:UniProtKB/TrEMBL;Acc:F6Z7V2]
ENSCJAG00000015311	KNOWN_BY_PROJECTION	protein_coding	WSCD2	chromosome:C_jacchus3.2.1:9:1:124281992:1	98249830	98309361	D	WSC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29117]
ENSCJAG00000000392	NOVEL	protein_coding	ENSCJAG00000000392	chromosome:C_jacchus3.2.1:17:1:74750902:1	18651024	18656822	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000662}  [Source:UniProtKB/TrEMBL;Acc:F6Q9Y6]
ENSCJAG00000021118	KNOWN	protein_coding	EMC4	chromosome:C_jacchus3.2.1:10:1:132174527:1	43446033	43452354	D	ER membrane protein complex subunit 4 {ECO:0000313|EMBL:JAB11248.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039297}  [Source:UniProtKB/TrEMBL;Acc:F7EN65]
ENSCJAG00000015320	KNOWN_BY_PROJECTION	protein_coding	CMKLR1	chromosome:C_jacchus3.2.1:9:1:124281992:1	98352743	98405871	R	chemokine-like receptor 1 [Source:HGNC Symbol;Acc:HGNC:2121]
ENSCJAG00000000389	KNOWN_BY_PROJECTION	protein_coding	RARRES1	chromosome:C_jacchus3.2.1:17:1:74750902:1	18662986	18699671	D	retinoic acid receptor responder (tazarotene induced) 1 [Source:HGNC Symbol;Acc:HGNC:9867]
ENSCJAG00000017597	NOVEL	pseudogene	ENSCJAG00000017597	chromosome:C_jacchus3.2.1:12:1:121768101:1	88852860	88854367	R	<no descrition>
ENSCJAG00000000995	KNOWN_BY_PROJECTION	protein_coding	ZNF513	chromosome:C_jacchus3.2.1:14:1:108792865:1	81064720	81067602	D	zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
ENSCJAG00000017600	KNOWN_BY_PROJECTION	protein_coding	POLL	chromosome:C_jacchus3.2.1:12:1:121768101:1	88888923	88899478	R	polymerase (DNA directed), lambda [Source:HGNC Symbol;Acc:HGNC:9184]
ENSCJAG00000019781	KNOWN_BY_PROJECTION	protein_coding	TANC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	81908980	82144325	D	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
ENSCJAG00000012042	KNOWN	protein_coding	SLC25A27	chromosome:C_jacchus3.2.1:4:1:171630274:1	48082746	48106869	D	Mitochondrial uncoupling protein 4 isoform 1 {ECO:0000313|EMBL:JAB14261.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022155}  [Source:UniProtKB/TrEMBL;Acc:F6XN61]
ENSCJAG00000019995	KNOWN_BY_PROJECTION	protein_coding	GOLGA2	chromosome:C_jacchus3.2.1:1:1:210400635:1	172191297	172212170	R	golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
ENSCJAG00000015326	KNOWN	protein_coding	FICD	chromosome:C_jacchus3.2.1:9:1:124281992:1	98590696	98595057	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028217}  [Source:UniProtKB/TrEMBL;Acc:F6XH59]
ENSCJAG00000000363	KNOWN	protein_coding	GFM1	chromosome:C_jacchus3.2.1:17:1:74750902:1	18705653	18757779	R	Elongation factor G, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03061}  [Source:UniProtKB/TrEMBL;Acc:F6QKI2]
ENSCJAG00000016311	KNOWN	protein_coding	DOCK7	chromosome:C_jacchus3.2.1:7:1:155834243:1	97784404	98006787	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030286}  [Source:UniProtKB/TrEMBL;Acc:F7A9E3]
ENSCJAG00000019777	KNOWN	protein_coding	CYB561	chromosome:C_jacchus3.2.1:5:1:159171411:1	82155164	82167535	R	Cytochrome b561 {ECO:0000313|EMBL:JAB11145.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036773}  [Source:UniProtKB/TrEMBL;Acc:F6QJS8]
ENSCJAG00000015330	KNOWN	protein_coding	SART3	chromosome:C_jacchus3.2.1:9:1:124281992:1	98597606	98640438	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028301}  [Source:UniProtKB/TrEMBL;Acc:F7C5F9]
ENSCJAG00000019774	NOVEL	pseudogene	ENSCJAG00000019774	chromosome:C_jacchus3.2.1:5:1:159171411:1	82192617	82193114	D	<no descrition>
ENSCJAG00000019755	NOVEL	protein_coding	ENSCJAG00000019755	chromosome:C_jacchus3.2.1:5:1:159171411:1	82197750	82221906	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036755}  [Source:UniProtKB/TrEMBL;Acc:F6QVU8]
ENSCJAG00000000386	KNOWN	protein_coding	LXN	chromosome:C_jacchus3.2.1:17:1:74750902:1	18723856	18730297	D	Latexin {ECO:0000313|EMBL:JAB02423.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000651}  [Source:UniProtKB/TrEMBL;Acc:F6QAW6]
ENSCJAG00000001001	KNOWN	protein_coding	SNX17	chromosome:C_jacchus3.2.1:14:1:108792865:1	81067824	81074310	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043347}  [Source:UniProtKB/TrEMBL;Acc:F7IRV4]
ENSCJAG00000002574	KNOWN	protein_coding	PPP2R5B	chromosome:C_jacchus3.2.1:11:1:130397257:1	120539915	120549751	D	Beta isoform of regulatory subunit B56, protein phosphatase 2A (Predicted) {ECO:0000313|EMBL:ABY90106.1}; Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform {ECO:0000313|EMBL:JAB09370.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004764}  [Source:UniProtKB/TrEMBL;Acc:B0KWL0]
ENSCJAG00000019462	NOVEL	pseudogene	ENSCJAG00000019462	chromosome:C_jacchus3.2.1:3:1:190850796:1	151101775	151102156	R	<no descrition>
ENSCJAG00000002568	KNOWN	protein_coding	GPHA2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120549751	120551151	R	Glycoprotein hormone alpha-2 {ECO:0000313|EMBL:JAB12471.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004672}  [Source:UniProtKB/TrEMBL;Acc:F6WRQ2]
ENSCJAG00000015970	KNOWN	protein_coding	SMURF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	12855556	12981254	D	E3 ubiquitin-protein ligase {ECO:0000256|PIRNR:PIRNR001569}  [Source:UniProtKB/TrEMBL;Acc:F7HLG6]
ENSCJAG00000019748	KNOWN_BY_PROJECTION	protein_coding	KCNH6	chromosome:C_jacchus3.2.1:5:1:159171411:1	82244834	82270934	D	potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
ENSCJAG00000019464	KNOWN	protein_coding	UBE2K	chromosome:C_jacchus3.2.1:3:1:190850796:1	151126086	151206361	R	Ubiquitin-conjugating enzyme E2 K isoform 2 {ECO:0000313|EMBL:JAB18818.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036139}  [Source:UniProtKB/TrEMBL;Acc:F7HJF8]
ENSCJAG00000002554	NOVEL	protein_coding	MA_R332_JSM910EBR	chromosome:C_jacchus3.2.1:11:1:130397257:1	120553405	120585643	R	Putative uncharacterized protein MA_r332_jsm910EBr {ECO:0000313|EMBL:ABY90107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004662}  [Source:UniProtKB/TrEMBL;Acc:B0KWL1]
ENSCJAG00000017614	KNOWN	protein_coding	DPCD	chromosome:C_jacchus3.2.1:12:1:121768101:1	88899540	88922552	D	Protein DPCD {ECO:0000313|EMBL:JAB02228.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032466}  [Source:UniProtKB/TrEMBL;Acc:F7HH78]
ENSCJAG00000002550	KNOWN_BY_PROJECTION	protein_coding	BATF2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120602851	120611949	R	basic leucine zipper transcription factor, ATF-like 2 [Source:HGNC Symbol;Acc:HGNC:25163]
ENSCJAG00000002545	KNOWN_BY_PROJECTION	protein_coding	ARL2-SNX15	chromosome:C_jacchus3.2.1:11:1:130397257:1	120632087	120639189	D	ARL2-SNX15 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:HGNC:49197]
ENSCJAG00000000352	KNOWN_BY_PROJECTION	protein_coding	MLF1	chromosome:C_jacchus3.2.1:17:1:74750902:1	18781012	18827014	R	myeloid leukemia factor 1 [Source:HGNC Symbol;Acc:HGNC:7125]
ENSCJAG00000017627	KNOWN	protein_coding	FBXW4	chromosome:C_jacchus3.2.1:12:1:121768101:1	88923949	89006641	R	F-box/WD repeat-containing protein 4 {ECO:0000313|EMBL:JAB02501.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032473}  [Source:UniProtKB/TrEMBL;Acc:F7HH18]
ENSCJAG00000002533	KNOWN_BY_PROJECTION	protein_coding	SNX15	chromosome:C_jacchus3.2.1:11:1:130397257:1	120649625	120666021	D	sorting nexin 15 [Source:HGNC Symbol;Acc:HGNC:14978]
ENSCJAG00000004797	KNOWN	protein_coding	RSRC1	chromosome:C_jacchus3.2.1:17:1:74750902:1	18850089	18858197	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008747}  [Source:UniProtKB/TrEMBL;Acc:F7HMB3]
ENSCJAG00000023399	NOVEL	protein_coding	ENSCJAG00000023399	chromosome:C_jacchus3.2.1:3:1:190850796:1	151341425	151342127	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041895}  [Source:UniProtKB/TrEMBL;Acc:F7HF11]
ENSCJAG00000022309	NOVEL	protein_coding	ENSCJAG00000022309	chromosome:C_jacchus3.2.1:17:1:74750902:1	19195634	19386543	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040949}  [Source:UniProtKB/TrEMBL;Acc:F7HV18]
ENSCJAG00000002527	KNOWN_BY_PROJECTION	protein_coding	SAC3D1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120666377	120669800	D	SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]
ENSCJAG00000036696	NOVEL	protein_coding	ENSCJAG00000036696	chromosome:C_jacchus3.2.1:17:1:74750902:1	19243699	19244812	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052310}  [Source:UniProtKB/TrEMBL;Acc:F7HVG9]
ENSCJAG00000000710	KNOWN_BY_PROJECTION	protein_coding	LIAS	chromosome:C_jacchus3.2.1:3:1:190850796:1	151363106	151382836	R	lipoic acid synthetase [Source:HGNC Symbol;Acc:HGNC:16429]
ENSCJAG00000002515	KNOWN_BY_PROJECTION	protein_coding	NAALADL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120670191	120676293	R	N-acetylated alpha-linked acidic dipeptidase-like 1 [Source:HGNC Symbol;Acc:HGNC:23536]
ENSCJAG00000004786	KNOWN_BY_PROJECTION	protein_coding	SHOX2	chromosome:C_jacchus3.2.1:17:1:74750902:1	19260660	19269778	D	short stature homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10854]
ENSCJAG00000004784	NOVEL	pseudogene	ENSCJAG00000004784	chromosome:C_jacchus3.2.1:17:1:74750902:1	19359132	19359636	R	<no descrition>
ENSCJAG00000017629	NOVEL	protein_coding	ENSCJAG00000017629	chromosome:C_jacchus3.2.1:12:1:121768101:1	89048824	89049601	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032478}  [Source:UniProtKB/TrEMBL;Acc:F7HGZ5]
ENSCJAG00000000723	KNOWN_BY_PROJECTION	protein_coding	RPL9	chromosome:C_jacchus3.2.1:3:1:190850796:1	151383251	151387853	D	ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
ENSCJAG00000002496	KNOWN	protein_coding	ZFPL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120675757	120709895	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047207}  [Source:UniProtKB/TrEMBL;Acc:F7IMW9]
ENSCJAG00000019745	KNOWN	protein_coding	DCAF7	chromosome:C_jacchus3.2.1:5:1:159171411:1	82272619	82315693	D	DDB1-and CUL4-associated factor 7 {ECO:0000313|EMBL:JAB05558.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036699}  [Source:UniProtKB/TrEMBL;Acc:F6SPY4]
ENSCJAG00000017631	NOVEL	pseudogene	ENSCJAG00000017631	chromosome:C_jacchus3.2.1:12:1:121768101:1	89055197	89055542	D	<no descrition>
ENSCJAG00000017634	KNOWN_BY_PROJECTION	protein_coding	FGF8	chromosome:C_jacchus3.2.1:12:1:121768101:1	89080497	89086406	R	fibroblast growth factor 8 (androgen-induced) [Source:HGNC Symbol;Acc:HGNC:3686]
ENSCJAG00000000729	KNOWN_BY_PROJECTION	protein_coding	KLB	chromosome:C_jacchus3.2.1:3:1:190850796:1	151395531	151432788	R	klotho beta [Source:HGNC Symbol;Acc:HGNC:15527]
ENSCJAG00000017650	KNOWN_BY_PROJECTION	protein_coding	NPM3	chromosome:C_jacchus3.2.1:12:1:121768101:1	89092554	89094601	R	nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:HGNC:7931]
ENSCJAG00000004776	KNOWN_BY_PROJECTION	protein_coding	PQLC2L	chromosome:C_jacchus3.2.1:17:1:74750902:1	19770257	19807668	R	PQ loop repeat containing 2-like [Source:HGNC Symbol;Acc:HGNC:25146]
ENSCJAG00000033486	KNOWN_BY_PROJECTION	protein_coding	RFC1	chromosome:C_jacchus3.2.1:3:1:190850796:1	151491035	151499796	D	replication factor C (activator 1) 1, 145kDa [Source:HGNC Symbol;Acc:HGNC:9969]
ENSCJAG00000020009	KNOWN_BY_PROJECTION	protein_coding	TRUB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	172245755	172262476	R	TruB pseudouridine (psi) synthase family member 2 [Source:HGNC Symbol;Acc:HGNC:17170]
ENSCJAG00000016008	KNOWN_BY_PROJECTION	protein_coding	TRRAP	chromosome:C_jacchus3.2.1:2:1:204313951:1	12991093	13121611	R	transformation/transcription domain-associated protein [Source:HGNC Symbol;Acc:HGNC:12347]
ENSCJAG00000020013	KNOWN	protein_coding	COQ4	chromosome:C_jacchus3.2.1:1:1:210400635:1	172262563	172277205	D	Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial {ECO:0000313|EMBL:JAB10266.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037235}  [Source:UniProtKB/TrEMBL;Acc:F6WM74]
ENSCJAG00000004747	KNOWN	protein_coding	VEPH1	chromosome:C_jacchus3.2.1:17:1:74750902:1	19839077	20069011	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008675}; Ventricular zone-expressed PH domain-containing protein homolog 1 isoform 1 {ECO:0000313|EMBL:JAB07153.1}  [Source:UniProtKB/TrEMBL;Acc:F7I887]
ENSCJAG00000002514	NOVEL	protein_coding	ENSCJAG00000002514	chromosome:C_jacchus3.2.1:11:1:130397257:1	120686918	120688018	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004563}  [Source:UniProtKB/TrEMBL;Acc:F7BP72]
ENSCJAG00000002502	KNOWN_BY_PROJECTION	protein_coding	CDCA5	chromosome:C_jacchus3.2.1:11:1:130397257:1	120699604	120704753	R	cell division cycle associated 5 [Source:HGNC Symbol;Acc:HGNC:14626]
ENSCJAG00000002495	KNOWN_BY_PROJECTION	protein_coding	TMEM262	chromosome:C_jacchus3.2.1:11:1:130397257:1	120709921	120710493	R	transmembrane protein 262 [Source:HGNC Symbol;Acc:HGNC:49389]
ENSCJAG00000019741	KNOWN_BY_PROJECTION	protein_coding	TACO1	chromosome:C_jacchus3.2.1:5:1:159171411:1	82324254	82335089	D	translational activator of mitochondrially encoded cytochrome c oxidase I [Source:HGNC Symbol;Acc:HGNC:24316]
ENSCJAG00000020016	KNOWN	protein_coding	SLC27A4	chromosome:C_jacchus3.2.1:1:1:210400635:1	172284409	172301333	D	Long-chain fatty acid transport protein 4 {ECO:0000313|EMBL:JAB01888.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037254}  [Source:UniProtKB/TrEMBL;Acc:F6W1K8]
ENSCJAG00000019716	KNOWN_BY_PROJECTION	protein_coding	MAP3K3	chromosome:C_jacchus3.2.1:5:1:159171411:1	82383802	82437482	D	mitogen-activated protein kinase kinase kinase 3 [Source:HGNC Symbol;Acc:HGNC:6855]
ENSCJAG00000000737	KNOWN_BY_PROJECTION	protein_coding	WDR19	chromosome:C_jacchus3.2.1:3:1:190850796:1	151503733	151614864	R	WD repeat domain 19 [Source:HGNC Symbol;Acc:HGNC:18340]
ENSCJAG00000021120	KNOWN	protein_coding	SLC12A6	chromosome:C_jacchus3.2.1:10:1:132174527:1	43455104	43557053	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029249}  [Source:UniProtKB/TrEMBL;Acc:F7HLP8]
ENSCJAG00000002459	KNOWN	protein_coding	VPS51	chromosome:C_jacchus3.2.1:11:1:130397257:1	120721768	120751981	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004537}; Vacuolar protein sorting-associated protein 51 homolog {ECO:0000313|EMBL:JAB06786.1}  [Source:UniProtKB/TrEMBL;Acc:F7CJS3]
ENSCJAG00000004771	KNOWN	protein_coding	PTX3	chromosome:C_jacchus3.2.1:17:1:74750902:1	19911173	19917569	R	Pentraxin-related protein PTX3 {ECO:0000313|EMBL:JAB36555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008683}  [Source:UniProtKB/TrEMBL;Acc:F7I850]
ENSCJAG00000016461	KNOWN_BY_PROJECTION	protein_coding	ANGPTL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	97941780	97949900	D	angiopoietin-like 3 [Source:HGNC Symbol;Acc:HGNC:491]
ENSCJAG00000002441	KNOWN_BY_PROJECTION	protein_coding	TM7SF2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120752137	120756830	D	transmembrane 7 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11863]
ENSCJAG00000004692	KNOWN_BY_PROJECTION	protein_coding	CCNL1	chromosome:C_jacchus3.2.1:17:1:74750902:1	20183431	20196978	D	cyclin L1 [Source:HGNC Symbol;Acc:HGNC:20569]
ENSCJAG00000016480	KNOWN	protein_coding	ATG4C	chromosome:C_jacchus3.2.1:7:1:155834243:1	98152998	98249860	D	Cysteine protease ATG4C {ECO:0000313|EMBL:JAB49262.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030373}  [Source:UniProtKB/TrEMBL;Acc:F6VRB1]
ENSCJAG00000017657	KNOWN	protein_coding	MGEA5	chromosome:C_jacchus3.2.1:12:1:121768101:1	89095596	89129495	R	Bifunctional protein NCOAT isoform b {ECO:0000313|EMBL:JAB33662.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043728}  [Source:UniProtKB/TrEMBL;Acc:F7HS56]
ENSCJAG00000020034	NOVEL	pseudogene	ENSCJAG00000020034	chromosome:C_jacchus3.2.1:1:1:210400635:1	172303157	172303740	R	<no descrition>
ENSCJAG00000020036	KNOWN_BY_PROJECTION	protein_coding	URM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172311154	172333132	D	ubiquitin related modifier 1 [Source:HGNC Symbol;Acc:HGNC:28378]
ENSCJAG00000016109	KNOWN	protein_coding	TMEM130	chromosome:C_jacchus3.2.1:2:1:204313951:1	13142219	13153275	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029648}  [Source:UniProtKB/TrEMBL;Acc:F7HRJ0]
ENSCJAG00000019715	KNOWN	protein_coding	LIMD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	82440333	82443177	R	LIM domain-containing protein 2 {ECO:0000313|EMBL:JAB02140.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045260}  [Source:UniProtKB/TrEMBL;Acc:F6QGD4]
ENSCJAG00000015374	NOVEL	protein_coding	ENSCJAG00000015374	chromosome:C_jacchus3.2.1:9:1:124281992:1	98640512	98648362	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028352}  [Source:UniProtKB/TrEMBL;Acc:F7A664]
ENSCJAG00000015220	KNOWN	protein_coding	NPTX2	chromosome:C_jacchus3.2.1:2:1:204313951:1	13382950	13395393	R	Neuronal pentraxin-2 {ECO:0000313|EMBL:JAB22470.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028052}  [Source:UniProtKB/TrEMBL;Acc:F6VRP3]
ENSCJAG00000031937	KNOWN_BY_PROJECTION	protein_coding	BAIAP2L1	chromosome:C_jacchus3.2.1:2:1:204313951:1	13702130	13730355	D	BAI1-associated protein 2-like 1 [Source:HGNC Symbol;Acc:HGNC:21649]
ENSCJAG00000015405	KNOWN_BY_PROJECTION	protein_coding	SELPLG	chromosome:C_jacchus3.2.1:9:1:124281992:1	98712867	98724935	R	selectin P ligand [Source:HGNC Symbol;Acc:HGNC:10722]
ENSCJAG00000032345	NOVEL	pseudogene	ENSCJAG00000032345	chromosome:C_jacchus3.2.1:2:1:204313951:1	13715233	13715614	R	<no descrition>
ENSCJAG00000015227	KNOWN	protein_coding	BRI3	chromosome:C_jacchus3.2.1:2:1:204313951:1	13732367	13742161	R	Brain protein I3 isoform a {ECO:0000313|EMBL:JAB10795.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028081}  [Source:UniProtKB/TrEMBL;Acc:F6UK70]
ENSCJAG00000020038	KNOWN	protein_coding	CERCAM	chromosome:C_jacchus3.2.1:1:1:210400635:1	172365754	172382952	D	Glycosyltransferase 25 family member 3 {ECO:0000313|EMBL:JAB03606.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037270}  [Source:UniProtKB/TrEMBL;Acc:F6UXA1]
ENSCJAG00000033559	NOVEL	pseudogene	ENSCJAG00000033559	chromosome:C_jacchus3.2.1:7:1:155834243:1	98666115	98666605	D	<no descrition>
ENSCJAG00000016521	KNOWN	protein_coding	ALG6	chromosome:C_jacchus3.2.1:7:1:155834243:1	98797055	98866014	D	Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase {ECO:0000313|EMBL:JAB03159.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030446}  [Source:UniProtKB/TrEMBL;Acc:F7B8P6]
ENSCJAG00000019701	KNOWN	protein_coding	STRADA	chromosome:C_jacchus3.2.1:5:1:159171411:1	82446363	82489218	R	STE20-related kinase adapter protein alpha isoform 1 {ECO:0000313|EMBL:JAB22461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036630}  [Source:UniProtKB/TrEMBL;Acc:F6TYM5]
ENSCJAG00000001028	KNOWN	protein_coding	EIF2B4	chromosome:C_jacchus3.2.1:14:1:108792865:1	81074394	81079653	D	Translation initiation factor eIF-2B subunit delta isoform 2 {ECO:0000313|EMBL:JAB02950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001818}  [Source:UniProtKB/TrEMBL;Acc:F7CB92]
ENSCJAG00000002432	KNOWN_BY_PROJECTION	protein_coding	FAU	chromosome:C_jacchus3.2.1:11:1:130397257:1	120761011	120762561	R	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed [Source:HGNC Symbol;Acc:HGNC:3597]
ENSCJAG00000033050	KNOWN_BY_PROJECTION	protein_coding	TECPR1	chromosome:C_jacchus3.2.1:2:1:204313951:1	13782931	13813003	D	tectonin beta-propeller repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:22214]
ENSCJAG00000002413	KNOWN_BY_PROJECTION	protein_coding	SYVN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120768664	120777334	R	synovial apoptosis inhibitor 1, synoviolin [Source:HGNC Symbol;Acc:HGNC:20738]
ENSCJAG00000004676	NOVEL	protein_coding	ENSCJAG00000004676	chromosome:C_jacchus3.2.1:17:1:74750902:1	20299292	20560591	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008501}  [Source:UniProtKB/TrEMBL;Acc:F7I175]
ENSCJAG00000012035	KNOWN_BY_PROJECTION	protein_coding	TDRD6	chromosome:C_jacchus3.2.1:4:1:171630274:1	48128094	48143337	D	tudor domain containing 6 [Source:HGNC Symbol;Acc:HGNC:21339]
ENSCJAG00000015240	KNOWN	protein_coding	LMTK2	chromosome:C_jacchus3.2.1:2:1:204313951:1	13824909	13917846	R	Serine/threonine-protein kinase LMTK2 {ECO:0000313|EMBL:JAB10987.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028102}  [Source:UniProtKB/TrEMBL;Acc:F7C6M9]
ENSCJAG00000004657	KNOWN	protein_coding	TIPARP	chromosome:C_jacchus3.2.1:17:1:74750902:1	20671001	20704006	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008453}  [Source:UniProtKB/TrEMBL;Acc:F7ICZ8]
ENSCJAG00000012017	KNOWN	protein_coding	PLA2G7	chromosome:C_jacchus3.2.1:4:1:171630274:1	48146036	48172563	R	Platelet-activating factor acetylhydrolase {ECO:0000313|EMBL:JAB04805.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022080}  [Source:UniProtKB/TrEMBL;Acc:F6ZU63]
ENSCJAG00000020042	KNOWN_BY_PROJECTION	protein_coding	ODF2	chromosome:C_jacchus3.2.1:1:1:210400635:1	172397599	172445665	D	outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
ENSCJAG00000016555	KNOWN	protein_coding	ITGB3BP	chromosome:C_jacchus3.2.1:7:1:155834243:1	98868243	98959373	R	Centromere protein R {ECO:0000256|PIRNR:PIRNR011860}  [Source:UniProtKB/TrEMBL;Acc:F7A6Y2]
ENSCJAG00000004643	KNOWN	protein_coding	SSR3	chromosome:C_jacchus3.2.1:17:1:74750902:1	20834165	20849342	D	Translocon-associated protein subunit gamma {ECO:0000313|EMBL:JAB03021.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008424}  [Source:UniProtKB/TrEMBL;Acc:F7IFI5]
ENSCJAG00000017676	KNOWN	protein_coding	KCNIP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	89138429	89158584	R	Kv channel-interacting protein 2 isoform 5 {ECO:0000313|EMBL:JAB17389.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032710}  [Source:UniProtKB/TrEMBL;Acc:F7H166]
ENSCJAG00000002403	KNOWN_BY_PROJECTION	protein_coding	SPDYC	chromosome:C_jacchus3.2.1:11:1:130397257:1	120808038	120811471	D	speedy/RINGO cell cycle regulator family member C [Source:HGNC Symbol;Acc:HGNC:32681]
ENSCJAG00000015256	NOVEL	protein_coding	ENSCJAG00000015256	chromosome:C_jacchus3.2.1:2:1:204313951:1	14014866	14015754	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052179}  [Source:UniProtKB/TrEMBL;Acc:F7HXZ8]
ENSCJAG00000015258	KNOWN	protein_coding	OCM2	chromosome:C_jacchus3.2.1:2:1:204313951:1	14050340	14057362	D	Putative oncomodulin-2 {ECO:0000313|EMBL:JAB05408.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028120}  [Source:UniProtKB/TrEMBL;Acc:F7B9H4]
ENSCJAG00000019683	KNOWN_BY_PROJECTION	protein_coding	CCDC47	chromosome:C_jacchus3.2.1:5:1:159171411:1	82491468	82549438	R	coiled-coil domain containing 47 [Source:HGNC Symbol;Acc:HGNC:24856]
ENSCJAG00000002371	KNOWN_BY_PROJECTION	protein_coding	CAPN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	120822936	120854932	D	calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
ENSCJAG00000001065	KNOWN	protein_coding	GTF3C2	chromosome:C_jacchus3.2.1:14:1:108792865:1	81084862	81118986	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001877}  [Source:UniProtKB/TrEMBL;Acc:F7BE35]
ENSCJAG00000016565	KNOWN	protein_coding	EFCAB7	chromosome:C_jacchus3.2.1:7:1:155834243:1	98959536	99006907	D	EF-hand calcium-binding domain-containing protein 7 {ECO:0000313|EMBL:JAB22459.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030516}  [Source:UniProtKB/TrEMBL;Acc:F6Y5N9]
ENSCJAG00000004577	KNOWN_BY_PROJECTION	protein_coding	KCNAB1	chromosome:C_jacchus3.2.1:17:1:74750902:1	20852631	21091869	R	potassium channel, voltage gated subfamily A regulatory beta subunit 1 [Source:HGNC Symbol;Acc:HGNC:6228]
ENSCJAG00000020060	KNOWN	protein_coding	GLE1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172450884	172490114	D	Nucleoporin GLE1 isoform 1 {ECO:0000313|EMBL:JAB04455.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037327}  [Source:UniProtKB/TrEMBL;Acc:F7AHA4]
ENSCJAG00000015269	NOVEL	protein_coding	ENSCJAG00000015269	chromosome:C_jacchus3.2.1:2:1:204313951:1	14069744	14099012	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028173}  [Source:UniProtKB/TrEMBL;Acc:F6ZPC0]
ENSCJAG00000035049	NOVEL	protein_coding	ENSCJAG00000035049	chromosome:C_jacchus3.2.1:17:1:74750902:1	21274035	21278355	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052385}  [Source:UniProtKB/TrEMBL;Acc:F7ILC7]
ENSCJAG00000010085	NOVEL	protein_coding	ENSCJAG00000010085	chromosome:C_jacchus3.2.1:X:1:142054208:1	11501	19184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018534}  [Source:UniProtKB/TrEMBL;Acc:F7ECJ9]
ENSCJAG00000012000	KNOWN_BY_PROJECTION	protein_coding	MEP1A	chromosome:C_jacchus3.2.1:4:1:171630274:1	48262467	48304686	D	meprin A, alpha (PABA peptide hydrolase) [Source:HGNC Symbol;Acc:HGNC:7015]
ENSCJAG00000002345	NOVEL	protein_coding	ENSCJAG00000002345	chromosome:C_jacchus3.2.1:11:1:130397257:1	120857130	120884909	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004268}  [Source:UniProtKB/TrEMBL;Acc:F6XGU0]
ENSCJAG00000002330	KNOWN	protein_coding	POLA2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120930836	120965523	D	DNA polymerase alpha subunit B {ECO:0000256|PIRNR:PIRNR018300}  [Source:UniProtKB/TrEMBL;Acc:F6YPZ0]
ENSCJAG00000015412	KNOWN	protein_coding	CORO1C	chromosome:C_jacchus3.2.1:9:1:124281992:1	98737598	98825450	R	Coronin {ECO:0000256|RuleBase:RU280818}  [Source:UniProtKB/TrEMBL;Acc:F6UZ42]
ENSCJAG00000001098	KNOWN_BY_PROJECTION	protein_coding	MPV17	chromosome:C_jacchus3.2.1:14:1:108792865:1	81122529	81135906	D	MpV17 mitochondrial inner membrane protein [Source:HGNC Symbol;Acc:HGNC:7224]
ENSCJAG00000016590	KNOWN	protein_coding	PGM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	99037009	99123426	D	Phosphoglucomutase-1 isoform 1 {ECO:0000313|EMBL:JAB02964.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030578}  [Source:UniProtKB/TrEMBL;Acc:F6VPV4]
ENSCJAG00000023372	KNOWN	protein_coding	UCN	chromosome:C_jacchus3.2.1:14:1:108792865:1	81137142	81138035	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041868}; Urocortin preproprotein {ECO:0000313|EMBL:JAB20241.1}  [Source:UniProtKB/TrEMBL;Acc:F7CU67]
ENSCJAG00000001102	KNOWN_BY_PROJECTION	protein_coding	TRIM54	chromosome:C_jacchus3.2.1:14:1:108792865:1	81138843	81161761	R	tripartite motif containing 54 [Source:HGNC Symbol;Acc:HGNC:16008]
ENSCJAG00000019649	KNOWN	protein_coding	DDX42	chromosome:C_jacchus3.2.1:5:1:159171411:1	82517422	82563251	D	ATP-dependent RNA helicase DDX42 {ECO:0000313|EMBL:JAB11393.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036539}  [Source:UniProtKB/TrEMBL;Acc:F7GD34]
ENSCJAG00000001112	KNOWN_BY_PROJECTION	protein_coding	DNAJC5G	chromosome:C_jacchus3.2.1:14:1:108792865:1	81166518	81167482	R	DnaJ (Hsp40) homolog, subfamily C, member 5 gamma [Source:HGNC Symbol;Acc:HGNC:24844]
ENSCJAG00000001114	KNOWN	protein_coding	SLC30A3	chromosome:C_jacchus3.2.1:14:1:108792865:1	81168548	81190931	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001927}; Zinc transporter 3 {ECO:0000313|EMBL:JAB26296.1}  [Source:UniProtKB/TrEMBL;Acc:F6XQY2]
ENSCJAG00000015308	NOVEL	protein_coding	ENSCJAG00000015308	chromosome:C_jacchus3.2.1:2:1:204313951:1	14098028	14134739	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028226}  [Source:UniProtKB/TrEMBL;Acc:F6XFX9]
ENSCJAG00000033215	NOVEL	protein_coding	ENSCJAG00000033215	chromosome:C_jacchus3.2.1:X:1:142054208:1	79194	80277	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047241}  [Source:UniProtKB/TrEMBL;Acc:F7II78]
ENSCJAG00000005592	NOVEL	protein_coding	ENSCJAG00000005592	chromosome:C_jacchus3.2.1:X:1:142054208:1	95781	97710	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010200}  [Source:UniProtKB/TrEMBL;Acc:F6VAB8]
ENSCJAG00000001126	KNOWN_BY_PROJECTION	protein_coding	CAD	chromosome:C_jacchus3.2.1:14:1:108792865:1	81201007	81227875	R	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Source:HGNC Symbol;Acc:HGNC:1424]
ENSCJAG00000001783	KNOWN_BY_PROJECTION	protein_coding	IL3RA	chromosome:C_jacchus3.2.1:X:1:142054208:1	261978	282818	D	interleukin 3 receptor, alpha (low affinity) [Source:HGNC Symbol;Acc:HGNC:6012]
ENSCJAG00000016620	KNOWN_BY_PROJECTION	protein_coding	ROR1	chromosome:C_jacchus3.2.1:7:1:155834243:1	99491128	99652568	D	receptor tyrosine kinase-like orphan receptor 1 [Source:HGNC Symbol;Acc:HGNC:10256]
ENSCJAG00000001800	KNOWN_BY_PROJECTION	protein_coding	SLC25A6	chromosome:C_jacchus3.2.1:X:1:142054208:1	288679	291107	R	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:HGNC Symbol;Acc:HGNC:10992]
ENSCJAG00000003880	KNOWN_BY_PROJECTION	protein_coding	ASMT	chromosome:C_jacchus3.2.1:X:1:142054208:1	537997	563034	R	acetylserotonin O-methyltransferase [Source:HGNC Symbol;Acc:HGNC:750]
ENSCJAG00000016640	KNOWN_BY_PROJECTION	protein_coding	UBE2U	chromosome:C_jacchus3.2.1:7:1:155834243:1	99672548	99748921	D	ubiquitin-conjugating enzyme E2U (putative) [Source:HGNC Symbol;Acc:HGNC:28559]
ENSCJAG00000019773	NOVEL	pseudogene	ENSCJAG00000019773	chromosome:C_jacchus3.2.1:X:1:142054208:1	579996	581507	R	<no descrition>
ENSCJAG00000002089	KNOWN_BY_PROJECTION	protein_coding	XG	chromosome:C_jacchus3.2.1:X:1:142054208:1	701862	731517	D	Xg blood group [Source:HGNC Symbol;Acc:HGNC:12806]
ENSCJAG00000033241	NOVEL	protein_coding	ENSCJAG00000033241	chromosome:C_jacchus3.2.1:17:1:74750902:1	21416311	21417936	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023295}  [Source:UniProtKB/TrEMBL;Acc:F7IFY7]
ENSCJAG00000015757	KNOWN_BY_PROJECTION	protein_coding	GYG2	chromosome:C_jacchus3.2.1:X:1:142054208:1	740210	795131	D	glycogenin 2 [Source:HGNC Symbol;Acc:HGNC:4700]
ENSCJAG00000011952	KNOWN	protein_coding	GPR116	chromosome:C_jacchus3.2.1:4:1:171630274:1	48317319	48417957	R	Putative G-protein coupled receptor 116 {ECO:0000313|EMBL:JAB10694.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022027}  [Source:UniProtKB/TrEMBL;Acc:F7BV17]
ENSCJAG00000015767	KNOWN_BY_PROJECTION	protein_coding	ARSD	chromosome:C_jacchus3.2.1:X:1:142054208:1	822053	880513	R	arylsulfatase D [Source:HGNC Symbol;Acc:HGNC:717]
ENSCJAG00000001170	KNOWN_BY_PROJECTION	protein_coding	ATRAID	chromosome:C_jacchus3.2.1:14:1:108792865:1	81228257	81232273	R	all-trans retinoic acid-induced differentiation factor [Source:HGNC Symbol;Acc:HGNC:24090]
ENSCJAG00000000863	KNOWN_BY_PROJECTION	protein_coding	GMPS	chromosome:C_jacchus3.2.1:17:1:74750902:1	21433155	21505470	R	guanine monphosphate synthase [Source:HGNC Symbol;Acc:HGNC:4378]
ENSCJAG00000000789	KNOWN_BY_PROJECTION	protein_coding	KLHL5	chromosome:C_jacchus3.2.1:3:1:190850796:1	151670493	151744300	R	kelch-like family member 5 [Source:HGNC Symbol;Acc:HGNC:6356]
ENSCJAG00000011931	KNOWN_BY_PROJECTION	protein_coding	GPR110	chromosome:C_jacchus3.2.1:4:1:171630274:1	48462134	48505808	R	G protein-coupled receptor 110 [Source:HGNC Symbol;Acc:HGNC:18990]
ENSCJAG00000015340	KNOWN	protein_coding	PMS2	chromosome:C_jacchus3.2.1:2:1:204313951:1	14140866	14187436	R	Mismatch repair endonuclease PMS2 isoform a {ECO:0000313|EMBL:JAB14453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028281}  [Source:UniProtKB/TrEMBL;Acc:F6UIU1]
ENSCJAG00000015787	KNOWN	protein_coding	DDX3Y	chromosome:C_jacchus3.2.1:X:1:142054208:1	919397	933493	R	ATP-dependent RNA helicase DDX3Y  [Source:RefSeq peptide;Acc:NP_001254690]
ENSCJAG00000000902	KNOWN	protein_coding	SLC33A1	chromosome:C_jacchus3.2.1:17:1:74750902:1	21526002	21551353	D	Acetyl-coenzyme A transporter 1 {ECO:0000313|EMBL:JAB09381.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045040}  [Source:UniProtKB/TrEMBL;Acc:F6TU88]
ENSCJAG00000000910	KNOWN	protein_coding	C3ORF33	chromosome:C_jacchus3.2.1:17:1:74750902:1	21571748	21607494	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001545}  [Source:UniProtKB/TrEMBL;Acc:F6ZXZ5]
ENSCJAG00000000913	NOVEL	pseudogene	ENSCJAG00000000913	chromosome:C_jacchus3.2.1:17:1:74750902:1	21627215	21628789	D	<no descrition>
ENSCJAG00000001184	KNOWN	protein_coding	SLC5A6	chromosome:C_jacchus3.2.1:14:1:108792865:1	81232170	81245572	D	Sodium-dependent multivitamin transporter {ECO:0000313|EMBL:JAB16733.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046134}  [Source:UniProtKB/TrEMBL;Acc:F6WET3]
ENSCJAG00000015460	KNOWN_BY_PROJECTION	protein_coding	SSH1	chromosome:C_jacchus3.2.1:9:1:124281992:1	98880056	98954411	R	slingshot protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:30579]
ENSCJAG00000000917	KNOWN_BY_PROJECTION	protein_coding	PLCH1	chromosome:C_jacchus3.2.1:17:1:74750902:1	21659704	21961548	D	phospholipase C, eta 1 [Source:HGNC Symbol;Acc:HGNC:29185]
ENSCJAG00000021165	KNOWN	protein_coding	ENSCJAG00000021165	chromosome:C_jacchus3.2.1:10:1:132174527:1	43562137	43563678	R	H/ACA ribonucleoprotein complex subunit 3 {ECO:0000313|EMBL:JAB03649.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039401}  [Source:UniProtKB/TrEMBL;Acc:F7GPI1]
ENSCJAG00000020080	KNOWN_BY_PROJECTION	protein_coding	SPTAN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172502332	172586556	D	spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
ENSCJAG00000021166	KNOWN_BY_PROJECTION	protein_coding	NUTM1	chromosome:C_jacchus3.2.1:10:1:132174527:1	43563832	43578707	D	NUT midline carcinoma, family member 1 [Source:HGNC Symbol;Acc:HGNC:29919]
ENSCJAG00000015803	KNOWN_BY_PROJECTION	protein_coding	ARSH	chromosome:C_jacchus3.2.1:X:1:142054208:1	963744	991185	D	arylsulfatase family, member H [Source:HGNC Symbol;Acc:HGNC:32488]
ENSCJAG00000019631	KNOWN_BY_PROJECTION	protein_coding	FTSJ3	chromosome:C_jacchus3.2.1:5:1:159171411:1	82563473	82570667	R	FtsJ homolog 3 (E. coli) [Source:HGNC Symbol;Acc:HGNC:17136]
ENSCJAG00000001198	KNOWN_BY_PROJECTION	protein_coding	TCF23	chromosome:C_jacchus3.2.1:14:1:108792865:1	81289245	81293401	R	transcription factor 23 [Source:HGNC Symbol;Acc:HGNC:18602]
ENSCJAG00000015810	KNOWN_BY_PROJECTION	protein_coding	ARSF	chromosome:C_jacchus3.2.1:X:1:142054208:1	1069669	1102657	D	arylsulfatase F [Source:HGNC Symbol;Acc:HGNC:721]
ENSCJAG00000001206	KNOWN_BY_PROJECTION	protein_coding	PRR30	chromosome:C_jacchus3.2.1:14:1:108792865:1	81310628	81313214	D	proline rich 30 [Source:HGNC Symbol;Acc:HGNC:28677]
ENSCJAG00000000958	NOVEL	pseudogene	ENSCJAG00000000958	chromosome:C_jacchus3.2.1:17:1:74750902:1	21889828	21890720	R	<no descrition>
ENSCJAG00000000810	KNOWN_BY_PROJECTION	protein_coding	TMEM156	chromosome:C_jacchus3.2.1:3:1:190850796:1	151819279	151828235	D	transmembrane protein 156 [Source:HGNC Symbol;Acc:HGNC:26260]
ENSCJAG00000016656	KNOWN_BY_PROJECTION	protein_coding	CACHD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	99991111	100218173	D	cache domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29314]
ENSCJAG00000000820	KNOWN_BY_PROJECTION	protein_coding	FAM114A1	chromosome:C_jacchus3.2.1:3:1:190850796:1	151870969	151951649	R	family with sequence similarity 114, member A1 [Source:HGNC Symbol;Acc:HGNC:25087]
ENSCJAG00000001207	KNOWN	protein_coding	PREB	chromosome:C_jacchus3.2.1:14:1:108792865:1	81316366	81320172	D	Prolactin regulatory element-binding protein {ECO:0000313|EMBL:JAB28837.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002134}  [Source:UniProtKB/TrEMBL;Acc:F7IJ09]
ENSCJAG00000000959	KNOWN_BY_PROJECTION	protein_coding	MME	chromosome:C_jacchus3.2.1:17:1:74750902:1	22161195	22310803	R	membrane metallo-endopeptidase [Source:HGNC Symbol;Acc:HGNC:7154]
ENSCJAG00000017743	KNOWN	protein_coding	C10ORF76	chromosome:C_jacchus3.2.1:12:1:121768101:1	89164765	89366779	R	UPF0668 protein C10orf76 {ECO:0000313|EMBL:JAB02012.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032774}  [Source:UniProtKB/TrEMBL;Acc:F7G899]
ENSCJAG00000016724	KNOWN_BY_PROJECTION	protein_coding	RAVER2	chromosome:C_jacchus3.2.1:7:1:155834243:1	100279274	100394849	D	ribonucleoprotein, PTB-binding 2 [Source:HGNC Symbol;Acc:HGNC:25577]
ENSCJAG00000015484	KNOWN	protein_coding	DAO	chromosome:C_jacchus3.2.1:9:1:124281992:1	98977033	98997589	D	D-amino-acid oxidase {ECO:0000313|EMBL:JAB42069.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028531}  [Source:UniProtKB/TrEMBL;Acc:F7B5E9]
ENSCJAG00000021171	KNOWN	protein_coding	LPCAT4	chromosome:C_jacchus3.2.1:10:1:132174527:1	43579875	43587465	R	Lysophospholipid acyltransferase LPCAT4 {ECO:0000313|EMBL:JAB08786.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039437}  [Source:UniProtKB/TrEMBL;Acc:F7G5I3]
ENSCJAG00000016743	KNOWN	protein_coding	JAK1	chromosome:C_jacchus3.2.1:7:1:155834243:1	100394969	100531592	R	Tyrosine-protein kinase {ECO:0000256|RuleBase:RU003492}  [Source:UniProtKB/TrEMBL;Acc:F6W791]
ENSCJAG00000013789	NOVEL	protein_coding	ENSCJAG00000013789	chromosome:C_jacchus3.2.1:X:1:142054208:1	1263241	1263805	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025345}  [Source:UniProtKB/TrEMBL;Acc:F7B000]
ENSCJAG00000002286	KNOWN_BY_PROJECTION	protein_coding	SLC25A45	chromosome:C_jacchus3.2.1:11:1:130397257:1	120965072	121047317	R	solute carrier family 25, member 45 [Source:HGNC Symbol;Acc:HGNC:27442]
ENSCJAG00000019558	KNOWN	protein_coding	PSMC5	chromosome:C_jacchus3.2.1:5:1:159171411:1	82571087	82576290	D	26S protease regulatory subunit 8 isoform 1 {ECO:0000313|EMBL:JAB03776.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036434}  [Source:UniProtKB/TrEMBL;Acc:F7E548]
ENSCJAG00000022194	KNOWN	protein_coding	CDC42EP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	120983596	120991111	D	Cdc42 effector protein 2 {ECO:0000313|EMBL:JAB09990.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043667}  [Source:UniProtKB/TrEMBL;Acc:F7I5F3]
ENSCJAG00000013776	KNOWN_BY_PROJECTION	protein_coding	MXRA5	chromosome:C_jacchus3.2.1:X:1:142054208:1	1309332	1351391	R	matrix-remodelling associated 5 [Source:HGNC Symbol;Acc:HGNC:7539]
ENSCJAG00000017775	NOVEL	pseudogene	ENSCJAG00000017775	chromosome:C_jacchus3.2.1:12:1:121768101:1	89181612	89182020	D	<no descrition>
ENSCJAG00000015369	NOVEL	pseudogene	ENSCJAG00000015369	chromosome:C_jacchus3.2.1:2:1:204313951:1	14182796	14183293	R	<no descrition>
ENSCJAG00000011904	KNOWN	protein_coding	TNFRSF21	chromosome:C_jacchus3.2.1:4:1:171630274:1	48687913	48767047	R	Tumor necrosis factor receptor superfamily member 21 {ECO:0000313|EMBL:JAB09908.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021891}  [Source:UniProtKB/TrEMBL;Acc:F6QC41]
ENSCJAG00000015370	KNOWN	protein_coding	AIMP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	14187163	14201130	D	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 {ECO:0000313|EMBL:JAB16923.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028302}  [Source:UniProtKB/TrEMBL;Acc:F7C5F2]
ENSCJAG00000019528	KNOWN_BY_PROJECTION	protein_coding	SMARCD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	82576343	82587450	R	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:HGNC:11107]
ENSCJAG00000017777	KNOWN	protein_coding	LDB1	chromosome:C_jacchus3.2.1:12:1:121768101:1	89427264	89440874	R	LIM domain-binding protein 1 isoform 1 {ECO:0000313|EMBL:JAB19424.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032829}  [Source:UniProtKB/TrEMBL;Acc:F7ECI5]
ENSCJAG00000002301	KNOWN	protein_coding	DPF2	chromosome:C_jacchus3.2.1:11:1:130397257:1	121001780	121021106	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004192}; Zinc finger protein ubi-d4 {ECO:0000313|EMBL:JAB11136.1}  [Source:UniProtKB/TrEMBL;Acc:F7A7X5]
ENSCJAG00000001229	KNOWN_BY_PROJECTION	protein_coding	ABHD1	chromosome:C_jacchus3.2.1:14:1:108792865:1	81320260	81325753	R	abhydrolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17553]
ENSCJAG00000019522	NOVEL	protein_coding	ENSCJAG00000019522	chromosome:C_jacchus3.2.1:5:1:159171411:1	82608234	82614684	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036267}  [Source:UniProtKB/TrEMBL;Acc:F7EIC9]
ENSCJAG00000033953	KNOWN_BY_PROJECTION	protein_coding	CGREF1	chromosome:C_jacchus3.2.1:14:1:108792865:1	81330325	81348836	D	cell growth regulator with EF-hand domain 1 [Source:HGNC Symbol;Acc:HGNC:16962]
ENSCJAG00000022193	KNOWN	protein_coding	TIGD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	121023058	121025649	D	Tigger transposable element-derived protein 3 {ECO:0000313|EMBL:JAB13755.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040849}  [Source:UniProtKB/TrEMBL;Acc:F7IBP2]
ENSCJAG00000015372	KNOWN_BY_PROJECTION	protein_coding	EIF2AK1	chromosome:C_jacchus3.2.1:2:1:204313951:1	14200922	14242163	R	eukaryotic translation initiation factor 2-alpha kinase 1 [Source:HGNC Symbol;Acc:HGNC:24921]
ENSCJAG00000002274	KNOWN	protein_coding	FRMD8	chromosome:C_jacchus3.2.1:11:1:130397257:1	121053012	121076382	D	FERM domain-containing protein 8 {ECO:0000313|EMBL:JAB02827.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004106}  [Source:UniProtKB/TrEMBL;Acc:F7CMM6]
ENSCJAG00000015499	KNOWN_BY_PROJECTION	protein_coding	SVOP	chromosome:C_jacchus3.2.1:9:1:124281992:1	99006575	99084419	R	SV2 related protein homolog (rat) [Source:HGNC Symbol;Acc:HGNC:25417]
ENSCJAG00000001241	KNOWN	protein_coding	KHK	chromosome:C_jacchus3.2.1:14:1:108792865:1	81348295	81363449	R	Ketohexokinase isoform b {ECO:0000313|EMBL:JAB04472.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002189}  [Source:UniProtKB/TrEMBL;Acc:F7IBW5]
ENSCJAG00000013775	NOVEL	pseudogene	ENSCJAG00000013775	chromosome:C_jacchus3.2.1:X:1:142054208:1	1385294	1386116	D	<no descrition>
ENSCJAG00000022192	NOVEL	protein_coding	ENSCJAG00000022192	chromosome:C_jacchus3.2.1:11:1:130397257:1	121163682	121168323	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040848}  [Source:UniProtKB/TrEMBL;Acc:F7IBP4]
ENSCJAG00000013771	KNOWN	protein_coding	PRKX	chromosome:C_jacchus3.2.1:X:1:142054208:1	1545081	1815475	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025312}  [Source:UniProtKB/TrEMBL;Acc:F7BZK5]
ENSCJAG00000011899	NOVEL	pseudogene	ENSCJAG00000011899	chromosome:C_jacchus3.2.1:4:1:171630274:1	48854525	48855124	R	<no descrition>
ENSCJAG00000000829	KNOWN_BY_PROJECTION	protein_coding	TLR6	chromosome:C_jacchus3.2.1:3:1:190850796:1	151964576	151989492	D	toll-like receptor 6 [Source:HGNC Symbol;Acc:HGNC:16711]
ENSCJAG00000019478	KNOWN	protein_coding	GH1	chromosome:C_jacchus3.2.1:5:1:159171411:1	82622740	82661490	R	Callithrix jacchus growth hormone (GH), mRNA. [Source:RefSeq mRNA;Acc:NM_001290346]
ENSCJAG00000000831	KNOWN	protein_coding	TLR1	chromosome:C_jacchus3.2.1:3:1:190850796:1	152013502	152024819	D	Toll-like receptor {ECO:0000256|PIRNR:PIRNR037595}  [Source:UniProtKB/TrEMBL;Acc:F6X7G7]
ENSCJAG00000011867	KNOWN	protein_coding	CD2AP	chromosome:C_jacchus3.2.1:4:1:171630274:1	48946298	49106822	D	CD2-associated protein {ECO:0000313|EMBL:JAB09041.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021842}  [Source:UniProtKB/TrEMBL;Acc:F6RJ57]
ENSCJAG00000016832	NOVEL	protein_coding	ENSCJAG00000016832	chromosome:C_jacchus3.2.1:7:1:155834243:1	100668294	100669141	D	<no descrition>
ENSCJAG00000016835	KNOWN	protein_coding	AK4	chromosome:C_jacchus3.2.1:7:1:155834243:1	100734624	100817950	D	Adenylate kinase 4, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03170}  [Source:UniProtKB/TrEMBL;Acc:F7GT48]
ENSCJAG00000000842	KNOWN_BY_PROJECTION	protein_coding	TLR10	chromosome:C_jacchus3.2.1:3:1:190850796:1	152045005	152054338	D	toll-like receptor 10 [Source:HGNC Symbol;Acc:HGNC:15634]
ENSCJAG00000013770	NOVEL	pseudogene	ENSCJAG00000013770	chromosome:C_jacchus3.2.1:X:1:142054208:1	2186992	2187467	D	<no descrition>
ENSCJAG00000001258	KNOWN_BY_PROJECTION	protein_coding	EMILIN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	81364569	81372438	R	elastin microfibril interfacer 1 [Source:HGNC Symbol;Acc:HGNC:19880]
ENSCJAG00000013757	NOVEL	protein_coding	ENSCJAG00000013757	chromosome:C_jacchus3.2.1:X:1:142054208:1	3701778	4045353	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025292}  [Source:UniProtKB/TrEMBL;Acc:F6VH45]
ENSCJAG00000021180	KNOWN_BY_PROJECTION	protein_coding	OR4N5	chromosome:C_jacchus3.2.1:10:1:132174527:1	43712095	43713812	D	olfactory receptor, family 4, subfamily N, member 5 [Source:HGNC Symbol;Acc:HGNC:15358]
ENSCJAG00000021181	NOVEL	protein_coding	ENSCJAG00000021181	chromosome:C_jacchus3.2.1:10:1:132174527:1	43761835	43762820	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039440}  [Source:UniProtKB/TrEMBL;Acc:F7G563]
ENSCJAG00000021182	NOVEL	protein_coding	ENSCJAG00000021182	chromosome:C_jacchus3.2.1:10:1:132174527:1	43792685	43793987	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7G550]
ENSCJAG00000002235	KNOWN_BY_PROJECTION	protein_coding	SCYL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121201192	121216227	D	SCY1-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:14372]
ENSCJAG00000011860	KNOWN_BY_PROJECTION	protein_coding	GPR111	chromosome:C_jacchus3.2.1:4:1:171630274:1	49155297	49175556	D	G protein-coupled receptor 111 [Source:HGNC Symbol;Acc:HGNC:18991]
ENSCJAG00000010157	KNOWN_BY_PROJECTION	protein_coding	USP30	chromosome:C_jacchus3.2.1:9:1:124281992:1	99137625	99171296	D	ubiquitin specific peptidase 30 [Source:HGNC Symbol;Acc:HGNC:20065]
ENSCJAG00000001270	KNOWN_BY_PROJECTION	protein_coding	OST4	chromosome:C_jacchus3.2.1:14:1:108792865:1	81381333	81382819	D	oligosaccharyltransferase 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:32483]
ENSCJAG00000016859	KNOWN_BY_PROJECTION	protein_coding	DNAJC6	chromosome:C_jacchus3.2.1:7:1:155834243:1	100858964	101039956	D	DnaJ (Hsp40) homolog, subfamily C, member 6 [Source:HGNC Symbol;Acc:HGNC:15469]
ENSCJAG00000020913	KNOWN	protein_coding	KLF3	chromosome:C_jacchus3.2.1:3:1:190850796:1	152135455	152171715	R	Krueppel-like factor 3 {ECO:0000313|EMBL:JAB09972.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038910}  [Source:UniProtKB/TrEMBL;Acc:F7HPC0]
ENSCJAG00000000982	KNOWN_BY_PROJECTION	protein_coding	GPR149	chromosome:C_jacchus3.2.1:17:1:74750902:1	22879714	22959017	D	G protein-coupled receptor 149 [Source:HGNC Symbol;Acc:HGNC:23627]
ENSCJAG00000001279	KNOWN_BY_PROJECTION	protein_coding	AGBL5	chromosome:C_jacchus3.2.1:14:1:108792865:1	81382677	81398713	R	ATP/GTP binding protein-like 5 [Source:HGNC Symbol;Acc:HGNC:26147]
ENSCJAG00000017812	KNOWN_BY_PROJECTION	protein_coding	PPRC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	89461214	89479465	D	peroxisome proliferator-activated receptor gamma, coactivator-related 1 [Source:HGNC Symbol;Acc:HGNC:30025]
ENSCJAG00000015402	KNOWN_BY_PROJECTION	protein_coding	ANKRD61	chromosome:C_jacchus3.2.1:2:1:204313951:1	14209701	14215083	D	ankyrin repeat domain 61 [Source:HGNC Symbol;Acc:HGNC:22467]
ENSCJAG00000034810	NOVEL	pseudogene	ENSCJAG00000034810	chromosome:C_jacchus3.2.1:X:1:142054208:1	4472475	4472958	D	<no descrition>
ENSCJAG00000010151	KNOWN	protein_coding	ALKBH2	chromosome:C_jacchus3.2.1:9:1:124281992:1	99173566	99179046	R	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 isoform 1 {ECO:0000313|EMBL:JAB03516.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018672}  [Source:UniProtKB/TrEMBL;Acc:F7GIQ4]
ENSCJAG00000015403	KNOWN_BY_PROJECTION	protein_coding	USP42	chromosome:C_jacchus3.2.1:2:1:204313951:1	14303720	14353205	D	ubiquitin specific peptidase 42 [Source:HGNC Symbol;Acc:HGNC:20068]
ENSCJAG00000021541	NOVEL	protein_coding	ENSCJAG00000021541	chromosome:C_jacchus3.2.1:10:1:132174527:1	43924113	43933695	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040111}  [Source:UniProtKB/TrEMBL;Acc:F7I525]
ENSCJAG00000021542	KNOWN	protein_coding	CHRNA7	chromosome:C_jacchus3.2.1:10:1:132174527:1	44079337	44091312	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040112}  [Source:UniProtKB/TrEMBL;Acc:F7I524]
ENSCJAG00000020157	KNOWN_BY_PROJECTION	protein_coding	WDR34	chromosome:C_jacchus3.2.1:1:1:210400635:1	172586558	172612873	R	WD repeat domain 34 [Source:HGNC Symbol;Acc:HGNC:28296]
ENSCJAG00000000986	KNOWN_BY_PROJECTION	protein_coding	DHX36	chromosome:C_jacchus3.2.1:17:1:74750902:1	22972948	23022037	D	DEAH (Asp-Glu-Ala-His) box polypeptide 36 [Source:HGNC Symbol;Acc:HGNC:14410]
ENSCJAG00000011845	KNOWN	protein_coding	GPR115	chromosome:C_jacchus3.2.1:4:1:171630274:1	49178918	49218802	D	Putative G-protein coupled receptor 115 {ECO:0000313|EMBL:JAB09998.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021757}  [Source:UniProtKB/TrEMBL;Acc:F6TPG4]
ENSCJAG00000015425	KNOWN	protein_coding	CYTH3	chromosome:C_jacchus3.2.1:2:1:204313951:1	14355811	14473083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028452}  [Source:UniProtKB/TrEMBL;Acc:F6VNX5]
ENSCJAG00000010037	NOVEL	pseudogene	ENSCJAG00000010037	chromosome:C_jacchus3.2.1:10:1:132174527:1	44171770	44172697	R	<no descrition>
ENSCJAG00000010036	NOVEL	pseudogene	ENSCJAG00000010036	chromosome:C_jacchus3.2.1:10:1:132174527:1	44182530	44183560	R	<no descrition>
ENSCJAG00000010005	KNOWN_BY_PROJECTION	protein_coding	OR11G2	chromosome:C_jacchus3.2.1:10:1:132174527:1	44398073	44586064	D	olfactory receptor, family 11, subfamily G, member 2 [Source:HGNC Symbol;Acc:HGNC:15346]
ENSCJAG00000023232	KNOWN_BY_PROJECTION	protein_coding	OR4Q3	chromosome:C_jacchus3.2.1:10:1:132174527:1	44440105	44441265	R	olfactory receptor, family 4, subfamily Q, member 3 [Source:HGNC Symbol;Acc:HGNC:15426]
ENSCJAG00000010014	NOVEL	pseudogene	ENSCJAG00000010014	chromosome:C_jacchus3.2.1:10:1:132174527:1	44477293	44477956	D	<no descrition>
ENSCJAG00000015455	KNOWN_BY_PROJECTION	protein_coding	RAC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	14607804	14621921	D	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:HGNC Symbol;Acc:HGNC:9801]
ENSCJAG00000002190	KNOWN_BY_PROJECTION	protein_coding	LTBP3	chromosome:C_jacchus3.2.1:11:1:130397257:1	121216497	121239939	R	latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
ENSCJAG00000010009	NOVEL	protein_coding	ENSCJAG00000010009	chromosome:C_jacchus3.2.1:10:1:132174527:1	44550699	44551699	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7HGW3]
ENSCJAG00000010004	KNOWN_BY_PROJECTION	protein_coding	OR11H6	chromosome:C_jacchus3.2.1:10:1:132174527:1	44606470	44607948	D	olfactory receptor, family 11, subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:15349]
ENSCJAG00000016938	NOVEL	protein_coding	ENSCJAG00000016938	chromosome:C_jacchus3.2.1:7:1:155834243:1	100921849	101120893	R	Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}  [Source:UniProtKB/TrEMBL;Acc:F7IM94]
ENSCJAG00000020921	KNOWN_BY_PROJECTION	protein_coding	TBC1D1	chromosome:C_jacchus3.2.1:3:1:190850796:1	152703998	152952193	R	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 [Source:HGNC Symbol;Acc:HGNC:11578]
ENSCJAG00000009975	KNOWN_BY_PROJECTION	protein_coding	TTC5	chromosome:C_jacchus3.2.1:10:1:132174527:1	44659472	44677680	R	tetratricopeptide repeat domain 5 [Source:HGNC Symbol;Acc:HGNC:19274]
ENSCJAG00000015461	KNOWN	protein_coding	DAGLB	chromosome:C_jacchus3.2.1:2:1:204313951:1	14630555	14665425	R	Sn1-specific diacylglycerol lipase beta isoform 1 {ECO:0000313|EMBL:JAB09033.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028489}  [Source:UniProtKB/TrEMBL;Acc:F6UGV2]
ENSCJAG00000020165	KNOWN_BY_PROJECTION	protein_coding	PKN3	chromosome:C_jacchus3.2.1:1:1:210400635:1	172637516	172653990	D	protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
ENSCJAG00000035518	NOVEL	protein_coding	ENSCJAG00000035518	chromosome:C_jacchus3.2.1:5:1:159171411:1	82622744	82624034	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036238}  [Source:UniProtKB/TrEMBL;Acc:F7FB59]
ENSCJAG00000019518	NOVEL	protein_coding	ENSCJAG00000019518	chromosome:C_jacchus3.2.1:5:1:159171411:1	82649399	82650491	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036251}  [Source:UniProtKB/TrEMBL;Acc:F7EXH4]
ENSCJAG00000032003	NOVEL	pseudogene	ENSCJAG00000032003	chromosome:C_jacchus3.2.1:5:1:159171411:1	82650116	82650351	D	<no descrition>
ENSCJAG00000019516	NOVEL	protein_coding	ENSCJAG00000019516	chromosome:C_jacchus3.2.1:5:1:159171411:1	82654936	82656210	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036242}  [Source:UniProtKB/TrEMBL;Acc:F7FAL6]
ENSCJAG00000019471	KNOWN_BY_PROJECTION	protein_coding	CD79B	chromosome:C_jacchus3.2.1:5:1:159171411:1	82673570	82676368	R	CD79b molecule, immunoglobulin-associated beta [Source:HGNC Symbol;Acc:HGNC:1699]
ENSCJAG00000002186	KNOWN_BY_PROJECTION	protein_coding	SSSCA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121256514	121259211	D	Sjogren syndrome/scleroderma autoantigen 1 [Source:HGNC Symbol;Acc:HGNC:11328]
ENSCJAG00000002180	KNOWN_BY_PROJECTION	protein_coding	FAM89B	chromosome:C_jacchus3.2.1:11:1:130397257:1	121259323	121262026	D	family with sequence similarity 89, member B [Source:HGNC Symbol;Acc:HGNC:16708]
ENSCJAG00000013175	NOVEL	pseudogene	ENSCJAG00000013175	chromosome:C_jacchus3.2.1:X:1:142054208:1	4610767	4611017	D	<no descrition>
ENSCJAG00000000284	KNOWN_BY_PROJECTION	protein_coding	HDHD1	chromosome:C_jacchus3.2.1:X:1:142054208:1	4846372	4956757	R	haloacid dehalogenase-like hydrolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16818]
ENSCJAG00000002150	KNOWN_BY_PROJECTION	protein_coding	EHBP1L1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121264187	121282962	D	EH domain binding protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:30682]
ENSCJAG00000019443	KNOWN_BY_PROJECTION	protein_coding	SCN4A	chromosome:C_jacchus3.2.1:5:1:159171411:1	82684464	82719467	R	sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
ENSCJAG00000002139	KNOWN_BY_PROJECTION	protein_coding	KCNK7	chromosome:C_jacchus3.2.1:11:1:130397257:1	121283592	121286990	R	potassium channel, two pore domain subfamily K, member 7 [Source:HGNC Symbol;Acc:HGNC:6282]
ENSCJAG00000000274	KNOWN_BY_PROJECTION	protein_coding	STS	chromosome:C_jacchus3.2.1:X:1:142054208:1	5025770	5162096	D	steroid sulfatase (microsomal), isozyme S [Source:HGNC Symbol;Acc:HGNC:11425]
ENSCJAG00000002128	KNOWN_BY_PROJECTION	protein_coding	MAP3K11	chromosome:C_jacchus3.2.1:11:1:130397257:1	121289040	121309241	R	mitogen-activated protein kinase kinase kinase 11 [Source:HGNC Symbol;Acc:HGNC:6850]
ENSCJAG00000001317	KNOWN_BY_PROJECTION	protein_coding	TMEM214	chromosome:C_jacchus3.2.1:14:1:108792865:1	81413610	81423013	R	transmembrane protein 214 [Source:HGNC Symbol;Acc:HGNC:25983]
ENSCJAG00000017832	KNOWN	protein_coding	NOLC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	89482232	89494560	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042464}  [Source:UniProtKB/TrEMBL;Acc:F6ZPF5]
ENSCJAG00000001036	KNOWN_BY_PROJECTION	protein_coding	ARHGEF26	chromosome:C_jacchus3.2.1:17:1:74750902:1	23034507	23176240	R	Rho guanine nucleotide exchange factor (GEF) 26 [Source:HGNC Symbol;Acc:HGNC:24490]
ENSCJAG00000002115	KNOWN_BY_PROJECTION	protein_coding	PCNXL3	chromosome:C_jacchus3.2.1:11:1:130397257:1	121311776	121335882	D	pecanex-like 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:18760]
ENSCJAG00000001045	NOVEL	pseudogene	ENSCJAG00000001045	chromosome:C_jacchus3.2.1:17:1:74750902:1	23216059	23216530	R	<no descrition>
ENSCJAG00000001048	NOVEL	protein_coding	ENSCJAG00000001048	chromosome:C_jacchus3.2.1:17:1:74750902:1	23784605	23785812	R	<no descrition>
ENSCJAG00000032849	NOVEL	pseudogene	ENSCJAG00000032849	chromosome:C_jacchus3.2.1:17:1:74750902:1	24181495	24183386	D	<no descrition>
ENSCJAG00000020184	KNOWN_BY_PROJECTION	protein_coding	ZDHHC12	chromosome:C_jacchus3.2.1:1:1:210400635:1	172653950	172657178	R	zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
ENSCJAG00000011823	KNOWN_BY_PROJECTION	protein_coding	OPN5	chromosome:C_jacchus3.2.1:4:1:171630274:1	49260477	49305601	D	opsin 5 [Source:HGNC Symbol;Acc:HGNC:19992]
ENSCJAG00000016945	KNOWN_BY_PROJECTION	protein_coding	LEPR	chromosome:C_jacchus3.2.1:7:1:155834243:1	101044778	101254791	D	leptin receptor [Source:HGNC Symbol;Acc:HGNC:6554]
ENSCJAG00000010134	NOVEL	protein_coding	ENSCJAG00000010134	chromosome:C_jacchus3.2.1:9:1:124281992:1	99183326	99194475	D	Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_03166}  [Source:UniProtKB/TrEMBL;Acc:F7GQH4]
ENSCJAG00000020189	KNOWN	protein_coding	ZER1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172663945	172711321	R	Protein zer-1 homolog {ECO:0000313|EMBL:JAB07954.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037561}  [Source:UniProtKB/TrEMBL;Acc:F6VZQ0]
ENSCJAG00000011815	KNOWN_BY_PROJECTION	protein_coding	PTCHD4	chromosome:C_jacchus3.2.1:4:1:171630274:1	49358537	49544972	R	patched domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21345]
ENSCJAG00000009967	KNOWN	protein_coding	CCNB1IP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	44681048	44706884	R	E3 ubiquitin-protein ligase CCNB1IP1 {ECO:0000313|EMBL:JAB04518.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018315}  [Source:UniProtKB/TrEMBL;Acc:F7ERK7]
ENSCJAG00000010041	KNOWN_BY_PROJECTION	protein_coding	ACACB	chromosome:C_jacchus3.2.1:9:1:124281992:1	99224589	99363774	D	acetyl-CoA carboxylase beta [Source:HGNC Symbol;Acc:HGNC:85]
ENSCJAG00000002062	KNOWN	protein_coding	SIPA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121336714	121350740	D	Signal-induced proliferation-associated protein 1 {ECO:0000313|EMBL:JAB21686.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004095}  [Source:UniProtKB/TrEMBL;Acc:F6VSA4]
ENSCJAG00000001341	KNOWN	protein_coding	MAPRE3	chromosome:C_jacchus3.2.1:14:1:108792865:1	81429201	81486514	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051633}  [Source:UniProtKB/TrEMBL;Acc:F6ZZ78]
ENSCJAG00000001054	KNOWN	protein_coding	MBNL1	chromosome:C_jacchus3.2.1:17:1:74750902:1	24787131	24966329	R	Muscleblind-like protein 1 isoform b {ECO:0000313|EMBL:JAB10617.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001842}  [Source:UniProtKB/TrEMBL;Acc:F7BWL1]
ENSCJAG00000033641	NOVEL	protein_coding	ENSCJAG00000033641	chromosome:C_jacchus3.2.1:X:1:142054208:1	5207630	5208075	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047549}  [Source:UniProtKB/TrEMBL;Acc:F7E4K8]
ENSCJAG00000015474	KNOWN	protein_coding	KDELR2	chromosome:C_jacchus3.2.1:2:1:204313951:1	14671222	14694335	R	ER lumen protein-retaining receptor {ECO:0000256|RuleBase:RU000634}  [Source:UniProtKB/TrEMBL;Acc:F7BPN6]
ENSCJAG00000000272	NOVEL	protein_coding	ENSCJAG00000000272	chromosome:C_jacchus3.2.1:X:1:142054208:1	5674439	5675135	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000460}  [Source:UniProtKB/TrEMBL;Acc:F7FA70]
ENSCJAG00000020207	KNOWN	protein_coding	TBC1D13	chromosome:C_jacchus3.2.1:1:1:210400635:1	172726432	172749513	D	TBC1 domain family member 13 {ECO:0000313|EMBL:JAB02330.1}; TBC1 domain family, member 13 (Predicted) {ECO:0000313|EMBL:ABY84163.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037582}  [Source:UniProtKB/TrEMBL;Acc:B0KWD8]
ENSCJAG00000011774	KNOWN	protein_coding	MUT	chromosome:C_jacchus3.2.1:4:1:171630274:1	50683583	50715381	R	Methylmalonyl-CoA mutase, mitochondrial {ECO:0000313|EMBL:JAB27446.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021672}  [Source:UniProtKB/TrEMBL;Acc:F6QPW2]
ENSCJAG00000000270	KNOWN	protein_coding	PNPLA4	chromosome:C_jacchus3.2.1:X:1:142054208:1	5725000	5754741	R	Patatin-like phospholipase domain-containing protein 4 isoform 1 {ECO:0000313|EMBL:JAB12727.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000456}  [Source:UniProtKB/TrEMBL;Acc:F7FNR1]
ENSCJAG00000015485	NOVEL	pseudogene	ENSCJAG00000015485	chromosome:C_jacchus3.2.1:2:1:204313951:1	14694132	14694506	D	<no descrition>
ENSCJAG00000015493	KNOWN_BY_PROJECTION	protein_coding	GRID2IP	chromosome:C_jacchus3.2.1:2:1:204313951:1	14707801	14758378	R	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein [Source:HGNC Symbol;Acc:HGNC:18464]
ENSCJAG00000000866	NOVEL	protein_coding	ENSCJAG00000000866	chromosome:C_jacchus3.2.1:X:1:142054208:1	5995001	5995605	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001476}  [Source:UniProtKB/TrEMBL;Acc:F6W127]
ENSCJAG00000000888	NOVEL	protein_coding	ENSCJAG00000000888	chromosome:C_jacchus3.2.1:X:1:142054208:1	6308184	6312098	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035023}  [Source:UniProtKB/TrEMBL;Acc:F7IG13]
ENSCJAG00000000873	KNOWN	protein_coding	KAL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	6387071	6576125	R	Anosmin-1 {ECO:0000313|EMBL:JAB13243.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001504}  [Source:UniProtKB/TrEMBL;Acc:F7AFB1]
ENSCJAG00000015517	KNOWN	protein_coding	ZDHHC4	chromosome:C_jacchus3.2.1:2:1:204313951:1	14784811	14797619	D	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F6Z4M3]
ENSCJAG00000019442	KNOWN_BY_PROJECTION	protein_coding	PRR29	chromosome:C_jacchus3.2.1:5:1:159171411:1	82745408	82748490	D	proline rich 29 [Source:HGNC Symbol;Acc:HGNC:25673]
ENSCJAG00000002037	KNOWN_BY_PROJECTION	protein_coding	RELA	chromosome:C_jacchus3.2.1:11:1:130397257:1	121354650	121366600	R	v-rel avian reticuloendotheliosis viral oncogene homolog A [Source:HGNC Symbol;Acc:HGNC:9955]
ENSCJAG00000015531	KNOWN_BY_PROJECTION	protein_coding	C7orf26	chromosome:C_jacchus3.2.1:2:1:204313951:1	14798968	14821281	D	chromosome 7 open reading frame 26 [Source:HGNC Symbol;Acc:HGNC:21702]
ENSCJAG00000017855	KNOWN_BY_PROJECTION	protein_coding	ELOVL3	chromosome:C_jacchus3.2.1:12:1:121768101:1	89597464	89600564	D	ELOVL fatty acid elongase 3 [Source:HGNC Symbol;Acc:HGNC:18047]
ENSCJAG00000019438	KNOWN_BY_PROJECTION	protein_coding	ICAM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	82748795	82763568	R	intercellular adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:5345]
ENSCJAG00000034904	NOVEL	protein_coding	ENSCJAG00000034904	chromosome:C_jacchus3.2.1:11:1:130397257:1	121407574	121408619	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045137}  [Source:UniProtKB/TrEMBL;Acc:F6SAN6]
ENSCJAG00000015536	NOVEL	protein_coding	ENSCJAG00000015536	chromosome:C_jacchus3.2.1:2:1:204313951:1	14859622	14887230	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028635}  [Source:UniProtKB/TrEMBL;Acc:F6W7P0]
ENSCJAG00000001352	KNOWN	protein_coding	DPYSL5	chromosome:C_jacchus3.2.1:14:1:108792865:1	81512902	81612810	R	Dihydropyrimidinase-related protein 5 {ECO:0000313|EMBL:JAB15245.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002411}  [Source:UniProtKB/TrEMBL;Acc:F7I2C1]
ENSCJAG00000017858	KNOWN	protein_coding	PITX3	chromosome:C_jacchus3.2.1:12:1:121768101:1	89601164	89612732	R	Pituitary homeobox 3 {ECO:0000313|EMBL:JAB38974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032949}  [Source:UniProtKB/TrEMBL;Acc:F7GQI1]
ENSCJAG00000015557	KNOWN_BY_PROJECTION	protein_coding	ZNF12	chromosome:C_jacchus3.2.1:2:1:204313951:1	14903197	14920168	R	zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
ENSCJAG00000000887	NOVEL	protein_coding	ENSCJAG00000000887	chromosome:C_jacchus3.2.1:X:1:142054208:1	6461815	6464260	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045017}  [Source:UniProtKB/TrEMBL;Acc:F6U5U4]
ENSCJAG00000019415	KNOWN_BY_PROJECTION	protein_coding	ERN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	82789609	82827500	R	endoplasmic reticulum to nucleus signaling 1 [Source:HGNC Symbol;Acc:HGNC:3449]
ENSCJAG00000000891	NOVEL	protein_coding	ENSCJAG00000000891	chromosome:C_jacchus3.2.1:X:1:142054208:1	6625916	6638280	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035032}  [Source:UniProtKB/TrEMBL;Acc:F7IDN7]
ENSCJAG00000000082	KNOWN_BY_PROJECTION	protein_coding	RNF216	chromosome:C_jacchus3.2.1:2:1:204313951:1	14952343	15113487	D	ring finger protein 216 [Source:HGNC Symbol;Acc:HGNC:21698]
ENSCJAG00000001971	KNOWN_BY_PROJECTION	protein_coding	KAT5	chromosome:C_jacchus3.2.1:11:1:130397257:1	121417878	121426931	D	K(lysine) acetyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:5275]
ENSCJAG00000009885	KNOWN_BY_PROJECTION	protein_coding	PARP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	44720482	44732020	D	poly (ADP-ribose) polymerase 2 [Source:HGNC Symbol;Acc:HGNC:272]
ENSCJAG00000037787	KNOWN	protein_coding	LEPROT	chromosome:C_jacchus3.2.1:7:1:155834243:1	101044892	101058187	D	Leptin receptor gene-related protein isoform 1 {ECO:0000313|EMBL:JAB10335.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031286}  [Source:UniProtKB/TrEMBL;Acc:F7IAD9]
ENSCJAG00000020941	KNOWN	protein_coding	PGM2	chromosome:C_jacchus3.2.1:3:1:190850796:1	152975697	153016667	R	Phosphoglucomutase-2 {ECO:0000313|EMBL:JAB05287.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047411}  [Source:UniProtKB/TrEMBL;Acc:F7IMS8]
ENSCJAG00000019377	KNOWN	protein_coding	TEX2	chromosome:C_jacchus3.2.1:5:1:159171411:1	82900253	83007999	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036021}  [Source:UniProtKB/TrEMBL;Acc:F7GTJ5]
ENSCJAG00000001372	NOVEL	protein_coding	ENSCJAG00000001372	chromosome:C_jacchus3.2.1:14:1:108792865:1	81647636	81648767	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002418}  [Source:UniProtKB/TrEMBL;Acc:F7I2B5]
ENSCJAG00000017022	KNOWN	protein_coding	PDE4B	chromosome:C_jacchus3.2.1:7:1:155834243:1	101872677	101997474	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031405}  [Source:UniProtKB/TrEMBL;Acc:F7IJQ7]
ENSCJAG00000001376	KNOWN	protein_coding	SLC35F6	chromosome:C_jacchus3.2.1:14:1:108792865:1	81666132	81680083	R	Transmembrane protein C2orf18 {ECO:0000313|EMBL:JAB05951.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002444}  [Source:UniProtKB/TrEMBL;Acc:F7I003]
ENSCJAG00000001389	KNOWN_BY_PROJECTION	protein_coding	KCNK3	chromosome:C_jacchus3.2.1:14:1:108792865:1	81716155	81760235	R	potassium channel, two pore domain subfamily K, member 3 [Source:HGNC Symbol;Acc:HGNC:6278]
ENSCJAG00000020220	NOVEL	protein_coding	ENDOG	chromosome:C_jacchus3.2.1:1:1:210400635:1	172756802	172760697	D	Endonuclease G (Predicted) {ECO:0000313|EMBL:ABY84164.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037584}  [Source:UniProtKB/TrEMBL;Acc:B0KWD9]
ENSCJAG00000001390	NOVEL	pseudogene	ENSCJAG00000001390	chromosome:C_jacchus3.2.1:14:1:108792865:1	81781996	81782966	D	<no descrition>
ENSCJAG00000001393	KNOWN_BY_PROJECTION	protein_coding	CIB4	chromosome:C_jacchus3.2.1:14:1:108792865:1	81809906	81876050	D	calcium and integrin binding family member 4 [Source:HGNC Symbol;Acc:HGNC:33703]
ENSCJAG00000001078	NOVEL	protein_coding	ENSCJAG00000001078	chromosome:C_jacchus3.2.1:17:1:74750902:1	24964766	24966198	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001848}  [Source:UniProtKB/TrEMBL;Acc:F7BWI5]
ENSCJAG00000033790	NOVEL	protein_coding	ENSCJAG00000033790	chromosome:C_jacchus3.2.1:17:1:74750902:1	25225923	25227910	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044955}  [Source:UniProtKB/TrEMBL;Acc:F7G7N9]
ENSCJAG00000011759	KNOWN_BY_PROJECTION	protein_coding	CENPQ	chromosome:C_jacchus3.2.1:4:1:171630274:1	50715447	50740569	D	centromere protein Q [Source:HGNC Symbol;Acc:HGNC:21347]
ENSCJAG00000001082	KNOWN_BY_PROJECTION	protein_coding	SUCNR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	25310119	25318561	R	succinate receptor 1 [Source:HGNC Symbol;Acc:HGNC:4542]
ENSCJAG00000001084	KNOWN	protein_coding	AADAC	chromosome:C_jacchus3.2.1:17:1:74750902:1	25349451	25369621	R	Arylacetamide deacetylase {ECO:0000313|EMBL:JAB03708.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001864}  [Source:UniProtKB/TrEMBL;Acc:F7BEV5]
ENSCJAG00000001406	KNOWN	protein_coding	C2ORF70	chromosome:C_jacchus3.2.1:14:1:108792865:1	81877646	81896209	R	UPF0573 protein C2orf70 {ECO:0000313|EMBL:JAB14658.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002480}  [Source:UniProtKB/TrEMBL;Acc:F7HV71]
ENSCJAG00000020221	KNOWN	protein_coding	C9ORF114	chromosome:C_jacchus3.2.1:1:1:210400635:1	172760088	172768109	R	Putative uncharacterized protein C9ORF114 {ECO:0000313|EMBL:ABY84165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037617}; Uncharacterized protein C9orf114 {ECO:0000313|EMBL:JAB04796.1}  [Source:UniProtKB/TrEMBL;Acc:B0KWE0]
ENSCJAG00000011743	KNOWN_BY_PROJECTION	protein_coding	GLYATL3	chromosome:C_jacchus3.2.1:4:1:171630274:1	50752916	50766967	D	glycine-N-acyltransferase-like 3 [Source:HGNC Symbol;Acc:HGNC:21349]
ENSCJAG00000000008	KNOWN_BY_PROJECTION	protein_coding	ACTB	chromosome:C_jacchus3.2.1:2:1:204313951:1	15168355	15171920	D	actin, beta [Source:HGNC Symbol;Acc:HGNC:132]
ENSCJAG00000001089	NOVEL	protein_coding	ENSCJAG00000001089	chromosome:C_jacchus3.2.1:17:1:74750902:1	25385795	25404267	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001875}  [Source:UniProtKB/TrEMBL;Acc:F7BE66]
ENSCJAG00000001095	KNOWN_BY_PROJECTION	protein_coding	AADACL2	chromosome:C_jacchus3.2.1:17:1:74750902:1	25417972	25446736	R	arylacetamide deacetylase-like 2 [Source:HGNC Symbol;Acc:HGNC:24427]
ENSCJAG00000034451	NOVEL	protein_coding	ENSCJAG00000034451	chromosome:C_jacchus3.2.1:17:1:74750902:1	25460718	25478392	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049447}  [Source:UniProtKB/TrEMBL;Acc:F7BHT4]
ENSCJAG00000000010	KNOWN_BY_PROJECTION	protein_coding	FBXL18	chromosome:C_jacchus3.2.1:2:1:204313951:1	15206187	15219352	D	F-box and leucine-rich repeat protein 18 [Source:HGNC Symbol;Acc:HGNC:21874]
ENSCJAG00000000012	NOVEL	pseudogene	ENSCJAG00000000012	chromosome:C_jacchus3.2.1:2:1:204313951:1	15280007	15280669	D	<no descrition>
ENSCJAG00000001099	NOVEL	protein_coding	ENSCJAG00000001099	chromosome:C_jacchus3.2.1:17:1:74750902:1	25523136	25524417	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001883}  [Source:UniProtKB/TrEMBL;Acc:F7AW79]
ENSCJAG00000017861	KNOWN_BY_PROJECTION	protein_coding	GBF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	89616458	89748909	D	golgi brefeldin A resistant guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:4181]
ENSCJAG00000001101	KNOWN_BY_PROJECTION	protein_coding	IGSF10	chromosome:C_jacchus3.2.1:17:1:74750902:1	25705170	25726436	D	immunoglobulin superfamily, member 10 [Source:HGNC Symbol;Acc:HGNC:26384]
ENSCJAG00000000014	KNOWN_BY_PROJECTION	protein_coding	TNRC18	chromosome:C_jacchus3.2.1:2:1:204313951:1	15286798	15404381	D	trinucleotide repeat containing 18 [Source:HGNC Symbol;Acc:HGNC:11962]
ENSCJAG00000001409	KNOWN_BY_PROJECTION	protein_coding	OTOF	chromosome:C_jacchus3.2.1:14:1:108792865:1	81923325	82000563	D	otoferlin [Source:HGNC Symbol;Acc:HGNC:8515]
ENSCJAG00000001110	KNOWN_BY_PROJECTION	protein_coding	MED12L	chromosome:C_jacchus3.2.1:17:1:74750902:1	25729075	25816081	R	mediator complex subunit 12-like [Source:HGNC Symbol;Acc:HGNC:16050]
ENSCJAG00000001965	KNOWN_BY_PROJECTION	protein_coding	RNASEH2C	chromosome:C_jacchus3.2.1:11:1:130397257:1	121426582	121428121	R	ribonuclease H2, subunit C [Source:HGNC Symbol;Acc:HGNC:24116]
ENSCJAG00000011739	NOVEL	pseudogene	ENSCJAG00000011739	chromosome:C_jacchus3.2.1:4:1:171630274:1	50790010	50790736	D	<no descrition>
ENSCJAG00000019367	KNOWN_BY_PROJECTION	protein_coding	PECAM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	83085160	83140686	R	platelet/endothelial cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:8823]
ENSCJAG00000001847	KNOWN	protein_coding	EFEMP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	121470617	121567968	R	EGF-containing fibulin-like extracellular matrix protein 2 {ECO:0000313|EMBL:JAB19002.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049528}  [Source:UniProtKB/TrEMBL;Acc:F6WJC4]
ENSCJAG00000011684	KNOWN_BY_PROJECTION	protein_coding	RHAG	chromosome:C_jacchus3.2.1:4:1:171630274:1	50817523	50844919	R	Rh-associated glycoprotein [Source:HGNC Symbol;Acc:HGNC:10006]
ENSCJAG00000010010	KNOWN_BY_PROJECTION	protein_coding	FOXN4	chromosome:C_jacchus3.2.1:9:1:124281992:1	99377176	99407270	R	forkhead box N4 [Source:HGNC Symbol;Acc:HGNC:21399]
ENSCJAG00000000896	KNOWN_BY_PROJECTION	protein_coding	FAM9C	chromosome:C_jacchus3.2.1:X:1:142054208:1	6661619	6664388	R	family with sequence similarity 9, member C [Source:HGNC Symbol;Acc:HGNC:18405]
ENSCJAG00000032779	NOVEL	protein_coding	ENSCJAG00000032779	chromosome:C_jacchus3.2.1:X:1:142054208:1	6732792	6733480	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050532}  [Source:UniProtKB/TrEMBL;Acc:F7FAN3]
ENSCJAG00000017101	KNOWN_BY_PROJECTION	protein_coding	SGIP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	102137830	102354336	D	SH3-domain GRB2-like (endophilin) interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:25412]
ENSCJAG00000000906	NOVEL	protein_coding	ENSCJAG00000000906	chromosome:C_jacchus3.2.1:X:1:142054208:1	6918226	6925966	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001533}  [Source:UniProtKB/TrEMBL;Acc:F6ZYG6]
ENSCJAG00000001129	KNOWN_BY_PROJECTION	protein_coding	P2RY12	chromosome:C_jacchus3.2.1:17:1:74750902:1	25779452	25827672	D	purinergic receptor P2Y, G-protein coupled, 12 [Source:HGNC Symbol;Acc:HGNC:18124]
ENSCJAG00000009995	KNOWN_BY_PROJECTION	protein_coding	MYO1H	chromosome:C_jacchus3.2.1:9:1:124281992:1	99491163	99568646	D	myosin IH [Source:HGNC Symbol;Acc:HGNC:13879]
ENSCJAG00000001136	KNOWN	protein_coding	P2RY13	chromosome:C_jacchus3.2.1:17:1:74750902:1	25835503	25967217	D	P2Y purinoceptor 13 {ECO:0000313|EMBL:JAB30397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001946}  [Source:UniProtKB/TrEMBL;Acc:F6XPZ9]
ENSCJAG00000001138	KNOWN	protein_coding	GPR87	chromosome:C_jacchus3.2.1:17:1:74750902:1	25849163	25871809	D	G-protein coupled receptor 87 {ECO:0000313|EMBL:JAB03483.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001957}  [Source:UniProtKB/TrEMBL;Acc:F6X312]
ENSCJAG00000001461	KNOWN_BY_PROJECTION	protein_coding	DRC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	82001957	82056591	R	dynein regulatory complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:24245]
ENSCJAG00000022199	KNOWN	protein_coding	P2RY14	chromosome:C_jacchus3.2.1:17:1:74750902:1	25888683	25964469	D	P2Y purinoceptor 14 {ECO:0000313|EMBL:JAB02008.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051490}  [Source:UniProtKB/TrEMBL;Acc:F7A0C7]
ENSCJAG00000020240	KNOWN_BY_PROJECTION	protein_coding	CCBL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172775785	172781824	R	cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:1564]
ENSCJAG00000001146	KNOWN_BY_PROJECTION	protein_coding	CLRN1	chromosome:C_jacchus3.2.1:17:1:74750902:1	26238815	26279797	D	clarin 1 [Source:HGNC Symbol;Acc:HGNC:12605]
ENSCJAG00000001477	KNOWN_BY_PROJECTION	protein_coding	EPT1	chromosome:C_jacchus3.2.1:14:1:108792865:1	82074334	82091867	R	ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) [Source:HGNC Symbol;Acc:HGNC:29361]
ENSCJAG00000000909	KNOWN_BY_PROJECTION	protein_coding	TBL1X	chromosome:C_jacchus3.2.1:X:1:142054208:1	7377893	7634149	D	transducin (beta)-like 1X-linked [Source:HGNC Symbol;Acc:HGNC:11585]
ENSCJAG00000020246	KNOWN	protein_coding	LRRC8A	chromosome:C_jacchus3.2.1:1:1:210400635:1	172808464	172848660	D	Leucine-rich repeat-containing 8 (Predicted) {ECO:0000313|EMBL:ABY84167.1}; Leucine-rich repeat-containing protein 8A {ECO:0000313|EMBL:JAB11596.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037635}  [Source:UniProtKB/TrEMBL;Acc:B0KWE2]
ENSCJAG00000001158	KNOWN	protein_coding	SELT	chromosome:C_jacchus3.2.1:17:1:74750902:1	26302212	26585912	R	selenoprotein T precursor  [Source:RefSeq peptide;Acc:NP_001186858]
ENSCJAG00000000922	KNOWN_BY_PROJECTION	protein_coding	GPR143	chromosome:C_jacchus3.2.1:X:1:142054208:1	7644000	7685749	R	G protein-coupled receptor 143 [Source:HGNC Symbol;Acc:HGNC:20145]
ENSCJAG00000000017	KNOWN_BY_PROJECTION	protein_coding	SLC29A4	chromosome:C_jacchus3.2.1:2:1:204313951:1	15407253	15427206	R	solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:23097]
ENSCJAG00000020054	KNOWN	protein_coding	PHYHD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	172852157	172873003	D	Phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB05523.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037303}  [Source:UniProtKB/TrEMBL;Acc:F7BIL5]
ENSCJAG00000001151	NOVEL	protein_coding	ENSCJAG00000001151	chromosome:C_jacchus3.2.1:17:1:74750902:1	26313039	26337479	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001977}  [Source:UniProtKB/TrEMBL;Acc:F6WGB3]
ENSCJAG00000031537	NOVEL	protein_coding	ENSCJAG00000031537	chromosome:C_jacchus3.2.1:X:1:142054208:1	7729134	7730325	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052287}  [Source:UniProtKB/TrEMBL;Acc:F7IGT4]
ENSCJAG00000000925	NOVEL	pseudogene	ENSCJAG00000000925	chromosome:C_jacchus3.2.1:X:1:142054208:1	7773747	7775035	R	<no descrition>
ENSCJAG00000001167	KNOWN	protein_coding	SIAH2	chromosome:C_jacchus3.2.1:17:1:74750902:1	26450350	26471886	D	E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}  [Source:UniProtKB/TrEMBL;Acc:F7I4Z0]
ENSCJAG00000020248	KNOWN_BY_PROJECTION	protein_coding	DOLK	chromosome:C_jacchus3.2.1:1:1:210400635:1	172876673	172879017	R	dolichol kinase [Source:HGNC Symbol;Acc:HGNC:23406]
ENSCJAG00000000928	KNOWN_BY_PROJECTION	protein_coding	SHROOM2	chromosome:C_jacchus3.2.1:X:1:142054208:1	7791503	7869191	D	shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
ENSCJAG00000001182	KNOWN_BY_PROJECTION	protein_coding	ERICH6	chromosome:C_jacchus3.2.1:17:1:74750902:1	26508596	26543846	D	glutamate-rich 6 [Source:HGNC Symbol;Acc:HGNC:28602]
ENSCJAG00000020249	KNOWN	protein_coding	NUP188	chromosome:C_jacchus3.2.1:1:1:210400635:1	172879415	172936838	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037697}  [Source:UniProtKB/TrEMBL;Acc:F6YW75]
ENSCJAG00000009781	KNOWN_BY_PROJECTION	protein_coding	TEP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	44735561	44790429	R	telomerase-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:11726]
ENSCJAG00000019250	KNOWN_BY_PROJECTION	protein_coding	MILR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	83193908	83223779	D	mast cell immunoglobulin-like receptor 1 [Source:HGNC Symbol;Acc:HGNC:27570]
ENSCJAG00000019361	NOVEL	pseudogene	ENSCJAG00000019361	chromosome:C_jacchus3.2.1:5:1:159171411:1	83203553	83204178	R	<no descrition>
ENSCJAG00000031777	KNOWN	protein_coding	KCTD10	chromosome:C_jacchus3.2.1:9:1:124281992:1	99570235	99596621	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051619}  [Source:UniProtKB/TrEMBL;Acc:F7AHC1]
ENSCJAG00000001957	KNOWN_BY_PROJECTION	protein_coding	OVOL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121482406	121492218	D	ovo-like zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:8525]
ENSCJAG00000020965	KNOWN	protein_coding	RELL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	153151545	153253246	D	RELT-like protein 1 {ECO:0000313|EMBL:JAB05745.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039002}  [Source:UniProtKB/TrEMBL;Acc:F7FUT1]
ENSCJAG00000019350	KNOWN	protein_coding	POLG2	chromosome:C_jacchus3.2.1:5:1:159171411:1	83237897	83254965	R	DNA polymerase subunit gamma-2, mitochondrial {ECO:0000313|EMBL:JAB14984.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035936}  [Source:UniProtKB/TrEMBL;Acc:F7F7L7]
ENSCJAG00000020970	KNOWN	protein_coding	C4ORF19	chromosome:C_jacchus3.2.1:3:1:190850796:1	153253046	153255198	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039009}  [Source:UniProtKB/TrEMBL;Acc:F7FUM4]
ENSCJAG00000018164	KNOWN_BY_PROJECTION	protein_coding	WIPI2	chromosome:C_jacchus3.2.1:2:1:204313951:1	15479707	15542035	R	WD repeat domain, phosphoinositide interacting 2 [Source:HGNC Symbol;Acc:HGNC:32225]
ENSCJAG00000020972	KNOWN_BY_PROJECTION	protein_coding	NWD2	chromosome:C_jacchus3.2.1:3:1:190850796:1	153378326	153578022	R	NACHT and WD repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29229]
ENSCJAG00000020974	KNOWN	protein_coding	DTHD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	154417776	154485970	R	Death domain-containing protein 1 {ECO:0000313|EMBL:JAB11965.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039017}  [Source:UniProtKB/TrEMBL;Acc:F7FFZ3]
ENSCJAG00000001930	KNOWN	protein_coding	SNX32	chromosome:C_jacchus3.2.1:11:1:130397257:1	121526696	121547649	D	Sorting nexin-32 {ECO:0000313|EMBL:JAB13643.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003527}  [Source:UniProtKB/TrEMBL;Acc:F7F0X0]
ENSCJAG00000000935	KNOWN	protein_coding	WWC3	chromosome:C_jacchus3.2.1:X:1:142054208:1	7979540	8064829	D	Protein WWC3 {ECO:0000313|EMBL:JAB06128.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001633}  [Source:UniProtKB/TrEMBL;Acc:F7CTB9]
ENSCJAG00000001491	KNOWN_BY_PROJECTION	protein_coding	GPR113	chromosome:C_jacchus3.2.1:14:1:108792865:1	82131295	82141919	D	G protein-coupled receptor 113 [Source:HGNC Symbol;Acc:HGNC:18989]
ENSCJAG00000020282	NOVEL	protein_coding	SH3GLB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	172938303	172959643	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043086}  [Source:UniProtKB/TrEMBL;Acc:F7HT20]
ENSCJAG00000031704	NOVEL	protein_coding	ENSCJAG00000031704	chromosome:C_jacchus3.2.1:14:1:108792865:1	82159782	82164566	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051637}  [Source:UniProtKB/TrEMBL;Acc:F6ZZ06]
ENSCJAG00000017222	KNOWN	protein_coding	TCTEX1D1	chromosome:C_jacchus3.2.1:7:1:155834243:1	102361545	102392243	D	Tctex1 domain-containing protein 1 {ECO:0000313|EMBL:JAB16813.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031673}  [Source:UniProtKB/TrEMBL;Acc:F7I7T4]
ENSCJAG00000007932	NOVEL	protein_coding	ENSCJAG00000007932	chromosome:C_jacchus3.2.1:14:1:108792865:1	82169071	82171476	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051593}  [Source:UniProtKB/TrEMBL;Acc:F6UAE1]
ENSCJAG00000001916	KNOWN	protein_coding	CFL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121548749	121553260	R	Cofilin-1 {ECO:0000313|EMBL:JAB33330.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003472}  [Source:UniProtKB/TrEMBL;Acc:F7GPI9]
ENSCJAG00000017226	KNOWN_BY_PROJECTION	protein_coding	INSL5	chromosome:C_jacchus3.2.1:7:1:155834243:1	102404795	102408254	R	insulin-like 5 [Source:HGNC Symbol;Acc:HGNC:6088]
ENSCJAG00000007943	KNOWN_BY_PROJECTION	protein_coding	HADHB	chromosome:C_jacchus3.2.1:14:1:108792865:1	82221135	82259582	R	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit [Source:HGNC Symbol;Acc:HGNC:4803]
ENSCJAG00000001199	KNOWN	protein_coding	EIF2A	chromosome:C_jacchus3.2.1:17:1:74750902:1	26600140	26643788	R	Eukaryotic translation initiation factor 2A {ECO:0000313|EMBL:JAB06334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013187}  [Source:UniProtKB/TrEMBL;Acc:F7C0U6]
ENSCJAG00000001894	KNOWN_BY_PROJECTION	protein_coding	MUS81	chromosome:C_jacchus3.2.1:11:1:130397257:1	121554298	121560530	D	MUS81 structure-specific endonuclease subunit [Source:HGNC Symbol;Acc:HGNC:29814]
ENSCJAG00000017231	KNOWN_BY_PROJECTION	protein_coding	WDR78	chromosome:C_jacchus3.2.1:7:1:155834243:1	102419936	102512469	R	WD repeat domain 78 [Source:HGNC Symbol;Acc:HGNC:26252]
ENSCJAG00000020285	KNOWN	protein_coding	FAM73B	chromosome:C_jacchus3.2.1:1:1:210400635:1	172968744	173005722	D	Protein FAM73B {ECO:0000313|EMBL:JAB03020.1}; Putative uncharacterized protein FAM73B {ECO:0000313|EMBL:ABY84173.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037708}  [Source:UniProtKB/TrEMBL;Acc:B0KWE8]
ENSCJAG00000001836	KNOWN_BY_PROJECTION	protein_coding	CTSW	chromosome:C_jacchus3.2.1:11:1:130397257:1	121575812	121580546	D	cathepsin W [Source:HGNC Symbol;Acc:HGNC:2546]
ENSCJAG00000009897	KNOWN	protein_coding	UBE3B	chromosome:C_jacchus3.2.1:9:1:124281992:1	99596925	99657130	D	Ubiquitin-protein ligase E3B isoform 1 {ECO:0000313|EMBL:JAB07386.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018289}  [Source:UniProtKB/TrEMBL;Acc:F7FWP5]
ENSCJAG00000020287	KNOWN	protein_coding	DOLPP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	173015168	173024177	D	Dolichyldiphosphatase 1  [Source:UniProtKB/Swiss-Prot;Acc:B0KWE9]
ENSCJAG00000007490	NOVEL	protein_coding	ENSCJAG00000007490	chromosome:C_jacchus3.2.1:2:1:204313951:1	15580215	15588544	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013927}  [Source:UniProtKB/TrEMBL;Acc:F6XPT6]
ENSCJAG00000008008	KNOWN	protein_coding	HADHA	chromosome:C_jacchus3.2.1:14:1:108792865:1	82259758	82314096	D	Trifunctional enzyme subunit alpha, mitochondrial {ECO:0000313|EMBL:JAB02174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014928}  [Source:UniProtKB/TrEMBL;Acc:F7HUX7]
ENSCJAG00000021500	KNOWN_BY_PROJECTION	protein_coding	RBAK	chromosome:C_jacchus3.2.1:2:1:204313951:1	15623082	15641008	R	RB-associated KRAB zinc finger [Source:HGNC Symbol;Acc:HGNC:17680]
ENSCJAG00000018338	KNOWN_BY_PROJECTION	protein_coding	MMD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	15648732	15703106	D	monocyte to macrophage differentiation-associated 2 [Source:HGNC Symbol;Acc:HGNC:30133]
ENSCJAG00000001795	KNOWN	protein_coding	FIBP	chromosome:C_jacchus3.2.1:11:1:130397257:1	121580670	121586542	R	Acidic fibroblast growth factor intracellular-binding protein isoform a {ECO:0000313|EMBL:JAB31363.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003278}  [Source:UniProtKB/TrEMBL;Acc:F7GHI8]
ENSCJAG00000019310	KNOWN	protein_coding	DDX5	chromosome:C_jacchus3.2.1:5:1:159171411:1	83257542	83264552	R	Putative ATP-dependent RNA helicase DDX5 {ECO:0000313|EMBL:JAB19769.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035916}  [Source:UniProtKB/TrEMBL;Acc:F7FYZ4]
ENSCJAG00000018360	KNOWN	protein_coding	RADIL	chromosome:C_jacchus3.2.1:2:1:204313951:1	15732434	15819578	D	Ras-associating and dilute domain-containing protein {ECO:0000313|EMBL:JAB17262.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034008}  [Source:UniProtKB/TrEMBL;Acc:F7BUP5]
ENSCJAG00000020293	NOVEL	protein_coding	CRAT	chromosome:C_jacchus3.2.1:1:1:210400635:1	173030687	173046130	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037721}  [Source:UniProtKB/TrEMBL;Acc:F6VYB2]
ENSCJAG00000020975	KNOWN_BY_PROJECTION	protein_coding	ARAP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	154537237	154730145	D	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:16924]
ENSCJAG00000011651	KNOWN_BY_PROJECTION	protein_coding	CRISP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	50909704	50931725	R	cysteine-rich secretory protein 2 [Source:HGNC Symbol;Acc:HGNC:12024]
ENSCJAG00000019293	KNOWN_BY_PROJECTION	protein_coding	CEP95	chromosome:C_jacchus3.2.1:5:1:159171411:1	83265223	83305640	D	centrosomal protein 95kDa [Source:HGNC Symbol;Acc:HGNC:25141]
ENSCJAG00000020295	KNOWN	protein_coding	PPP2R4	chromosome:C_jacchus3.2.1:1:1:210400635:1	173046448	173086389	D	Serine/threonine-protein phosphatase 2A activator isoform f {ECO:0000313|EMBL:JAB33417.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037725}  [Source:UniProtKB/TrEMBL;Acc:F6VY34]
ENSCJAG00000017928	KNOWN_BY_PROJECTION	protein_coding	NFKB2	chromosome:C_jacchus3.2.1:12:1:121768101:1	89774393	89783248	D	nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [Source:HGNC Symbol;Acc:HGNC:7795]
ENSCJAG00000001793	NOVEL	pseudogene	ENSCJAG00000001793	chromosome:C_jacchus3.2.1:11:1:130397257:1	121588285	121589510	D	<no descrition>
ENSCJAG00000001776	KNOWN	protein_coding	FOSL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121589881	121598982	R	Fos-related antigen 1 {ECO:0000313|EMBL:JAB37310.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003194}  [Source:UniProtKB/TrEMBL;Acc:F7HFP1]
ENSCJAG00000001242	KNOWN_BY_PROJECTION	protein_coding	SERP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	26644119	26647248	D	stress-associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
ENSCJAG00000020994	KNOWN	protein_coding	PCDH7	chromosome:C_jacchus3.2.1:3:1:190850796:1	159990538	160194591	R	Protocadherin-7 isoform a {ECO:0000313|EMBL:JAB11031.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039066}  [Source:UniProtKB/TrEMBL;Acc:F7ENB3]
ENSCJAG00000001775	KNOWN_BY_PROJECTION	protein_coding	C11orf68	chromosome:C_jacchus3.2.1:11:1:130397257:1	121616235	121758595	R	chromosome 11 open reading frame 68 [Source:HGNC Symbol;Acc:HGNC:28801]
ENSCJAG00000008091	KNOWN_BY_PROJECTION	protein_coding	GAREML	chromosome:C_jacchus3.2.1:14:1:108792865:1	82316506	82325278	R	GRB2 associated, regulator of MAPK1-like [Source:HGNC Symbol;Acc:HGNC:27172]
ENSCJAG00000001763	KNOWN	protein_coding	DRAP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121618624	121620781	D	Dr1-associated corepressor {ECO:0000313|EMBL:JAB43776.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003173}  [Source:UniProtKB/TrEMBL;Acc:F7CWL5]
ENSCJAG00000034786	NOVEL	protein_coding	ENSCJAG00000034786	chromosome:C_jacchus3.2.1:3:1:190850796:1	163389745	163391182	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052438}  [Source:UniProtKB/TrEMBL;Acc:F7I744]
ENSCJAG00000001249	KNOWN_BY_PROJECTION	protein_coding	TSC22D2	chromosome:C_jacchus3.2.1:17:1:74750902:1	26719789	26772088	R	TSC22 domain family, member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
ENSCJAG00000008103	KNOWN	protein_coding	RAB10	chromosome:C_jacchus3.2.1:14:1:108792865:1	82370907	82468294	R	Ras-related protein Rab-10 {ECO:0000313|EMBL:JAB08353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015000}  [Source:UniProtKB/TrEMBL;Acc:F7GPY7]
ENSCJAG00000020299	KNOWN_BY_PROJECTION	protein_coding	IER5L	chromosome:C_jacchus3.2.1:1:1:210400635:1	173111250	173114324	R	immediate early response 5-like [Source:HGNC Symbol;Acc:HGNC:23679]
ENSCJAG00000033865	NOVEL	pseudogene	ENSCJAG00000033865	chromosome:C_jacchus3.2.1:17:1:74750902:1	27148278	27148761	R	<no descrition>
ENSCJAG00000008135	NOVEL	pseudogene	ENSCJAG00000008135	chromosome:C_jacchus3.2.1:14:1:108792865:1	82503772	82504489	D	<no descrition>
ENSCJAG00000020997	KNOWN_BY_PROJECTION	protein_coding	STIM2	chromosome:C_jacchus3.2.1:3:1:190850796:1	164008426	164173416	R	stromal interaction molecule 2 [Source:HGNC Symbol;Acc:HGNC:19205]
ENSCJAG00000001271	KNOWN	protein_coding	PFN2	chromosome:C_jacchus3.2.1:17:1:74750902:1	27222303	27228233	D	Profilin {ECO:0000256|RuleBase:RU003909}  [Source:UniProtKB/TrEMBL;Acc:F7HQH2]
ENSCJAG00000001757	KNOWN_BY_PROJECTION	protein_coding	TSGA10IP	chromosome:C_jacchus3.2.1:11:1:130397257:1	121645746	121661322	D	testis specific, 10 interacting protein [Source:HGNC Symbol;Acc:HGNC:26555]
ENSCJAG00000035558	NOVEL	protein_coding	ENSCJAG00000035558	chromosome:C_jacchus3.2.1:1:1:210400635:1	173358428	173358977	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052194}  [Source:UniProtKB/TrEMBL;Acc:F7HVQ8]
ENSCJAG00000020306	KNOWN_BY_PROJECTION	protein_coding	C9orf50	chromosome:C_jacchus3.2.1:1:1:210400635:1	173590539	173598234	R	chromosome 9 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:23677]
ENSCJAG00000019260	KNOWN_BY_PROJECTION	protein_coding	SMURF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	83312760	83432313	R	SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]
ENSCJAG00000020309	KNOWN	protein_coding	NTMT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	173604115	173614546	D	N-terminal Xaa-Pro-Lys N-methyltransferase 1 {ECO:0000313|EMBL:JAB01966.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037758}  [Source:UniProtKB/TrEMBL;Acc:F6URV7]
ENSCJAG00000008138	KNOWN	protein_coding	KIF3C	chromosome:C_jacchus3.2.1:14:1:108792865:1	82517073	82568956	D	Kinesin-like protein KIF3C {ECO:0000313|EMBL:JAB20542.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046957}  [Source:UniProtKB/TrEMBL;Acc:F7I3H3]
ENSCJAG00000017941	KNOWN_BY_PROJECTION	protein_coding	PSD	chromosome:C_jacchus3.2.1:12:1:121768101:1	89784278	89801665	R	pleckstrin and Sec7 domain containing [Source:HGNC Symbol;Acc:HGNC:9507]
ENSCJAG00000017276	KNOWN	protein_coding	MIER1	chromosome:C_jacchus3.2.1:7:1:155834243:1	102512421	102575117	D	Mesoderm induction early response protein 1 isoform c {ECO:0000313|EMBL:JAB07654.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031926}  [Source:UniProtKB/TrEMBL;Acc:F7I0F7]
ENSCJAG00000001741	KNOWN_BY_PROJECTION	protein_coding	SART1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121662813	121684808	D	squamous cell carcinoma antigen recognized by T cells [Source:HGNC Symbol;Acc:HGNC:10538]
ENSCJAG00000011629	KNOWN_BY_PROJECTION	protein_coding	CRISP3	chromosome:C_jacchus3.2.1:4:1:171630274:1	50951206	50965191	R	cysteine-rich secretory protein 3 [Source:HGNC Symbol;Acc:HGNC:16904]
ENSCJAG00000001297	KNOWN	protein_coding	RNF13	chromosome:C_jacchus3.2.1:17:1:74750902:1	27232092	27419148	R	E3 ubiquitin-protein ligase RNF13 {ECO:0000313|EMBL:JAB10976.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044695}  [Source:UniProtKB/TrEMBL;Acc:F7HBJ4]
ENSCJAG00000011614	KNOWN_BY_PROJECTION	protein_coding	CRISP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	51034537	51057480	R	cysteine-rich secretory protein 1 [Source:HGNC Symbol;Acc:HGNC:304]
ENSCJAG00000001315	KNOWN_BY_PROJECTION	protein_coding	ANKUB1	chromosome:C_jacchus3.2.1:17:1:74750902:1	27437733	27465748	D	ankyrin repeat and ubiquitin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29642]
ENSCJAG00000020312	KNOWN_BY_PROJECTION	protein_coding	ASB6	chromosome:C_jacchus3.2.1:1:1:210400635:1	173615451	173619567	R	ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:HGNC:17181]
ENSCJAG00000001327	KNOWN	protein_coding	COMMD2	chromosome:C_jacchus3.2.1:17:1:74750902:1	27472977	27484574	D	COMM domain-containing protein 2 {ECO:0000313|EMBL:JAB01810.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002334}  [Source:UniProtKB/TrEMBL;Acc:F7IIX2]
ENSCJAG00000000961	KNOWN	protein_coding	CLCN4	chromosome:C_jacchus3.2.1:X:1:142054208:1	8077050	8166018	D	H(+)/Cl(-) exchange transporter 4 isoform 1 {ECO:0000313|EMBL:JAB04172.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001683}  [Source:UniProtKB/TrEMBL;Acc:F7BX81]
ENSCJAG00000020303	KNOWN_BY_PROJECTION	protein_coding	PRRX2	chromosome:C_jacchus3.2.1:1:1:210400635:1	173645840	173705223	D	paired related homeobox 2 [Source:HGNC Symbol;Acc:HGNC:21338]
ENSCJAG00000009772	KNOWN	protein_coding	KLHL33	chromosome:C_jacchus3.2.1:10:1:132174527:1	44808363	44815423	R	Kelch-like protein 33 {ECO:0000313|EMBL:JAB39784.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017923}  [Source:UniProtKB/TrEMBL;Acc:F7IEC7]
ENSCJAG00000020337	KNOWN	protein_coding	PTGES	chromosome:C_jacchus3.2.1:1:1:210400635:1	173725306	173743613	R	Prostaglandin E synthase {ECO:0000313|EMBL:JAB11467.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037804}  [Source:UniProtKB/TrEMBL;Acc:F7BE45]
ENSCJAG00000001336	KNOWN_BY_PROJECTION	protein_coding	WWTR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	27529134	27742922	D	WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]
ENSCJAG00000020343	KNOWN	protein_coding	TOR1B	chromosome:C_jacchus3.2.1:1:1:210400635:1	173796896	173803430	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037809}  [Source:UniProtKB/TrEMBL;Acc:F7AWV8]
ENSCJAG00000009755	KNOWN	protein_coding	OSGEP	chromosome:C_jacchus3.2.1:10:1:132174527:1	44825607	44833506	R	Probable tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_03180}  [Source:UniProtKB/TrEMBL;Acc:F7IEF6]
ENSCJAG00000034269	NOVEL	pseudogene	ENSCJAG00000034269	chromosome:C_jacchus3.2.1:5:1:159171411:1	83590656	83591110	D	<no descrition>
ENSCJAG00000020346	KNOWN	protein_coding	TOR1A	chromosome:C_jacchus3.2.1:1:1:210400635:1	173807259	173818125	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037816}  [Source:UniProtKB/TrEMBL;Acc:F7AVV0]
ENSCJAG00000001738	KNOWN	protein_coding	PPM1E	chromosome:C_jacchus3.2.1:5:1:159171411:1	83651029	83676552	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003112}  [Source:UniProtKB/TrEMBL;Acc:F7DWP8]
ENSCJAG00000018673	NOVEL	pseudogene	ENSCJAG00000018673	chromosome:C_jacchus3.2.1:2:1:204313951:1	15828129	15828346	D	<no descrition>
ENSCJAG00000001732	KNOWN_BY_PROJECTION	protein_coding	EIF1AD	chromosome:C_jacchus3.2.1:11:1:130397257:1	121706801	121709675	R	eukaryotic translation initiation factor 1A domain containing [Source:HGNC Symbol;Acc:HGNC:28147]
ENSCJAG00000001343	KNOWN_BY_PROJECTION	protein_coding	TM4SF4	chromosome:C_jacchus3.2.1:17:1:74750902:1	27758493	27790797	R	transmembrane 4 L six family member 4 [Source:HGNC Symbol;Acc:HGNC:11856]
ENSCJAG00000018675	KNOWN_BY_PROJECTION	protein_coding	AP5Z1	chromosome:C_jacchus3.2.1:2:1:204313951:1	15838916	15850850	R	adaptor-related protein complex 5, zeta 1 subunit [Source:HGNC Symbol;Acc:HGNC:22197]
ENSCJAG00000022477	NOVEL	protein_coding	ENSCJAG00000022477	chromosome:C_jacchus3.2.1:14:1:108792865:1	82622597	82631651	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041090}  [Source:UniProtKB/TrEMBL;Acc:F7FGA0]
ENSCJAG00000017990	KNOWN_BY_PROJECTION	protein_coding	FBXL15	chromosome:C_jacchus3.2.1:12:1:121768101:1	89801548	89804896	D	F-box and leucine-rich repeat protein 15 [Source:HGNC Symbol;Acc:HGNC:28155]
ENSCJAG00000020318	KNOWN	protein_coding	C9ORF78	chromosome:C_jacchus3.2.1:1:1:210400635:1	173822336	173831722	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037797}; Uncharacterized protein C9orf78 {ECO:0000313|EMBL:JAB14075.1}  [Source:UniProtKB/TrEMBL;Acc:F7CRF5]
ENSCJAG00000008396	KNOWN_BY_PROJECTION	protein_coding	ASXL2	chromosome:C_jacchus3.2.1:14:1:108792865:1	82702864	82757346	D	additional sex combs like transcriptional regulator 2 [Source:HGNC Symbol;Acc:HGNC:23805]
ENSCJAG00000001729	KNOWN	protein_coding	ENSCJAG00000001729	chromosome:C_jacchus3.2.1:11:1:130397257:1	121709987	121711710	D	barrier-to-autointegration factor  [Source:RefSeq peptide;Acc:NP_001240689]
ENSCJAG00000018682	KNOWN_BY_PROJECTION	protein_coding	FOXK1	chromosome:C_jacchus3.2.1:2:1:204313951:1	15867632	15955389	R	forkhead box K1 [Source:HGNC Symbol;Acc:HGNC:23480]
ENSCJAG00000017994	KNOWN_BY_PROJECTION	protein_coding	CUEDC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	89805011	89806936	R	CUE domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28352]
ENSCJAG00000008388	NOVEL	protein_coding	ENSCJAG00000008388	chromosome:C_jacchus3.2.1:14:1:108792865:1	82820911	82821682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015433}  [Source:UniProtKB/TrEMBL;Acc:F7GUQ2]
ENSCJAG00000032860	NOVEL	pseudogene	ENSCJAG00000032860	chromosome:C_jacchus3.2.1:2:1:204313951:1	16204717	16205437	R	<no descrition>
ENSCJAG00000020348	KNOWN	protein_coding	USP20	chromosome:C_jacchus3.2.1:1:1:210400635:1	173831961	173871856	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F6ZVE0]
ENSCJAG00000018706	KNOWN_BY_PROJECTION	protein_coding	SDK1	chromosome:C_jacchus3.2.1:2:1:204313951:1	16367785	17006114	R	sidekick cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:19307]
ENSCJAG00000018722	NOVEL	protein_coding	ENSCJAG00000018722	chromosome:C_jacchus3.2.1:2:1:204313951:1	17094085	17096263	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034780}  [Source:UniProtKB/TrEMBL;Acc:F7I3K9]
ENSCJAG00000021004	KNOWN	protein_coding	TBC1D19	chromosome:C_jacchus3.2.1:3:1:190850796:1	164276250	164423810	R	TBC1 domain family member 19 {ECO:0000313|EMBL:JAB05362.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039130}  [Source:UniProtKB/TrEMBL;Acc:F7HAJ4]
ENSCJAG00000001664	KNOWN_BY_PROJECTION	protein_coding	TRIM37	chromosome:C_jacchus3.2.1:5:1:159171411:1	83678139	83822775	R	tripartite motif containing 37 [Source:HGNC Symbol;Acc:HGNC:7523]
ENSCJAG00000001718	KNOWN	protein_coding	CST6	chromosome:C_jacchus3.2.1:11:1:130397257:1	121718585	121720075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003080}  [Source:UniProtKB/TrEMBL;Acc:F7FG59]
ENSCJAG00000001712	KNOWN_BY_PROJECTION	protein_coding	CATSPER1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121723243	121731456	R	cation channel, sperm associated 1 [Source:HGNC Symbol;Acc:HGNC:17116]
ENSCJAG00000017361	KNOWN	protein_coding	SLC35D1	chromosome:C_jacchus3.2.1:7:1:155834243:1	102590238	102656729	R	UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter {ECO:0000313|EMBL:JAB38360.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032045}  [Source:UniProtKB/TrEMBL;Acc:F7HHN3]
ENSCJAG00000008281	KNOWN	protein_coding	DTNB	chromosome:C_jacchus3.2.1:14:1:108792865:1	82841612	83113721	D	Dystrobrevin {ECO:0000256|PIRNR:PIRNR038204}  [Source:UniProtKB/TrEMBL;Acc:F6RZZ2]
ENSCJAG00000001701	KNOWN	protein_coding	GAL3ST3	chromosome:C_jacchus3.2.1:11:1:130397257:1	121747505	121755129	R	Galactose-3-O-sulfotransferase 3 {ECO:0000313|EMBL:JAB20641.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003054}  [Source:UniProtKB/TrEMBL;Acc:F7G7D8]
ENSCJAG00000018006	KNOWN_BY_PROJECTION	protein_coding	TMEM180	chromosome:C_jacchus3.2.1:12:1:121768101:1	89849800	89863200	D	transmembrane protein 180 [Source:HGNC Symbol;Acc:HGNC:26196]
ENSCJAG00000035157	NOVEL	protein_coding	ENSCJAG00000035157	chromosome:C_jacchus3.2.1:2:1:204313951:1	17459437	17477733	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046541}  [Source:UniProtKB/TrEMBL;Acc:F7I3T8]
ENSCJAG00000001656	KNOWN_BY_PROJECTION	protein_coding	SF3B2	chromosome:C_jacchus3.2.1:11:1:130397257:1	121758524	121775446	D	splicing factor 3b, subunit 2, 145kDa [Source:HGNC Symbol;Acc:HGNC:10769]
ENSCJAG00000001345	NOVEL	protein_coding	ENSCJAG00000001345	chromosome:C_jacchus3.2.1:17:1:74750902:1	27848921	27849974	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002365}  [Source:UniProtKB/TrEMBL;Acc:F7IGG9]
ENSCJAG00000018725	KNOWN_BY_PROJECTION	protein_coding	CARD11	chromosome:C_jacchus3.2.1:2:1:204313951:1	17646514	17687388	D	caspase recruitment domain family, member 11 [Source:HGNC Symbol;Acc:HGNC:16393]
ENSCJAG00000031307	KNOWN	protein_coding	TM4SF1	chromosome:C_jacchus3.2.1:17:1:74750902:1	27894037	27902195	D	Transmembrane 4 L6 family member 1 {ECO:0000313|EMBL:JAB05437.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049717}  [Source:UniProtKB/TrEMBL;Acc:F6VDE3]
ENSCJAG00000011612	KNOWN_BY_PROJECTION	protein_coding	DEFB133	chromosome:C_jacchus3.2.1:4:1:171630274:1	51124179	51127500	R	defensin, beta 133 [Source:HGNC Symbol;Acc:HGNC:31331]
ENSCJAG00000000987	KNOWN	protein_coding	MID1	chromosome:C_jacchus3.2.1:X:1:142054208:1	8241559	8599102	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044270}  [Source:UniProtKB/TrEMBL;Acc:F7D2L2]
ENSCJAG00000011608	KNOWN_BY_PROJECTION	protein_coding	DEFB114	chromosome:C_jacchus3.2.1:4:1:171630274:1	51141648	51145609	R	defensin, beta 114 [Source:HGNC Symbol;Acc:HGNC:18095]
ENSCJAG00000011605	KNOWN_BY_PROJECTION	protein_coding	DEFB113	chromosome:C_jacchus3.2.1:4:1:171630274:1	51153400	51154355	R	defensin, beta 113 [Source:HGNC Symbol;Acc:HGNC:18094]
ENSCJAG00000001371	KNOWN_BY_PROJECTION	protein_coding	TM4SF18	chromosome:C_jacchus3.2.1:17:1:74750902:1	27944028	27956476	D	transmembrane 4 L six family member 18 [Source:HGNC Symbol;Acc:HGNC:25181]
ENSCJAG00000011602	KNOWN_BY_PROJECTION	protein_coding	DEFB110	chromosome:C_jacchus3.2.1:4:1:171630274:1	51172075	51191424	R	defensin, beta 110 locus [Source:HGNC Symbol;Acc:HGNC:18091]
ENSCJAG00000018741	KNOWN	protein_coding	GNA12	chromosome:C_jacchus3.2.1:2:1:204313951:1	17759154	17878580	D	Guanine nucleotide-binding protein subunit alpha-12 {ECO:0000313|EMBL:JAB11401.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034837}  [Source:UniProtKB/TrEMBL;Acc:F7HML1]
ENSCJAG00000011600	KNOWN_BY_PROJECTION	protein_coding	DEFB112	chromosome:C_jacchus3.2.1:4:1:171630274:1	51199442	51204795	R	defensin, beta 112 [Source:HGNC Symbol;Acc:HGNC:18093]
ENSCJAG00000011580	KNOWN_BY_PROJECTION	protein_coding	TFAP2D	chromosome:C_jacchus3.2.1:4:1:171630274:1	51890474	51947618	D	transcription factor AP-2 delta (activating enhancer binding protein 2 delta) [Source:HGNC Symbol;Acc:HGNC:15581]
ENSCJAG00000011561	KNOWN	protein_coding	TFAP2B	chromosome:C_jacchus3.2.1:4:1:171630274:1	52000911	52032088	D	Transcription factor AP-2-beta {ECO:0000313|EMBL:JAB48582.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021259}  [Source:UniProtKB/TrEMBL;Acc:F6R2P2]
ENSCJAG00000017398	KNOWN_BY_PROJECTION	protein_coding	C1orf141	chromosome:C_jacchus3.2.1:7:1:155834243:1	102685476	102724104	R	chromosome 1 open reading frame 141 [Source:HGNC Symbol;Acc:HGNC:32044]
ENSCJAG00000020360	KNOWN_BY_PROJECTION	protein_coding	FNBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	173879887	174040607	R	formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
ENSCJAG00000018761	KNOWN_BY_PROJECTION	protein_coding	AMZ1	chromosome:C_jacchus3.2.1:2:1:204313951:1	17894798	17933577	R	archaelysin family metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:22231]
ENSCJAG00000009881	KNOWN_BY_PROJECTION	protein_coding	MMAB	chromosome:C_jacchus3.2.1:9:1:124281992:1	99674951	99693295	R	methylmalonic aciduria (cobalamin deficiency) cblB type [Source:HGNC Symbol;Acc:HGNC:19331]
ENSCJAG00000009726	KNOWN	protein_coding	APEX1	chromosome:C_jacchus3.2.1:10:1:132174527:1	44833592	44836233	D	DNA-(Apurinic or apyrimidinic site) lyase {ECO:0000313|EMBL:JAB20464.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017864}  [Source:UniProtKB/TrEMBL;Acc:F7HKI5]
ENSCJAG00000031526	KNOWN_BY_PROJECTION	protein_coding	TVP23B	chromosome:C_jacchus3.2.1:7:1:155834243:1	102731468	102732946	R	trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:20399]
ENSCJAG00000001377	KNOWN_BY_PROJECTION	protein_coding	CP	chromosome:C_jacchus3.2.1:17:1:74750902:1	28030982	28095288	D	ceruloplasmin (ferroxidase) [Source:HGNC Symbol;Acc:HGNC:2295]
ENSCJAG00000017407	KNOWN_BY_PROJECTION	protein_coding	IL23R	chromosome:C_jacchus3.2.1:7:1:155834243:1	102740611	102859321	D	interleukin 23 receptor [Source:HGNC Symbol;Acc:HGNC:19100]
ENSCJAG00000008384	NOVEL	protein_coding	ENSCJAG00000008384	chromosome:C_jacchus3.2.1:14:1:108792865:1	82868937	82872264	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051558}  [Source:UniProtKB/TrEMBL;Acc:F6VHL5]
ENSCJAG00000011554	NOVEL	pseudogene	ENSCJAG00000011554	chromosome:C_jacchus3.2.1:4:1:171630274:1	52070593	52072891	D	<no descrition>
ENSCJAG00000008381	NOVEL	protein_coding	ENSCJAG00000008381	chromosome:C_jacchus3.2.1:14:1:108792865:1	83072441	83073264	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052327}  [Source:UniProtKB/TrEMBL;Acc:F7HQW3]
ENSCJAG00000031224	NOVEL	pseudogene	ENSCJAG00000031224	chromosome:C_jacchus3.2.1:4:1:171630274:1	52740992	52741381	R	<no descrition>
ENSCJAG00000018011	KNOWN	protein_coding	ACTR1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	89862703	89887225	R	Alpha-centractin {ECO:0000313|EMBL:JAB09607.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033297}  [Source:UniProtKB/TrEMBL;Acc:F6QFY6]
ENSCJAG00000001648	KNOWN_BY_PROJECTION	protein_coding	PACS1	chromosome:C_jacchus3.2.1:11:1:130397257:1	121897612	121959264	D	phosphofurin acidic cluster sorting protein 1 [Source:HGNC Symbol;Acc:HGNC:30032]
ENSCJAG00000001655	KNOWN	protein_coding	SKA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	83827405	83883547	R	Spindle and kinetochore-associated protein 2 isoform 1 {ECO:0000313|EMBL:JAB12015.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002955}  [Source:UniProtKB/TrEMBL;Acc:F7HUW3]
ENSCJAG00000008172	KNOWN_BY_PROJECTION	protein_coding	DNMT3A	chromosome:C_jacchus3.2.1:14:1:108792865:1	83156977	83269677	D	DNA (cytosine-5-)-methyltransferase 3 alpha [Source:HGNC Symbol;Acc:HGNC:2978]
ENSCJAG00000018772	KNOWN_BY_PROJECTION	protein_coding	BRAT1	chromosome:C_jacchus3.2.1:2:1:204313951:1	17940560	17962172	R	BRCA1-associated ATM activator 1 [Source:HGNC Symbol;Acc:HGNC:21701]
ENSCJAG00000001640	KNOWN_BY_PROJECTION	protein_coding	PRR11	chromosome:C_jacchus3.2.1:5:1:159171411:1	83884093	84026227	D	proline rich 11 [Source:HGNC Symbol;Acc:HGNC:25619]
ENSCJAG00000021028	KNOWN_BY_PROJECTION	protein_coding	CCKAR	chromosome:C_jacchus3.2.1:3:1:190850796:1	164525898	164534442	D	cholecystokinin A receptor [Source:HGNC Symbol;Acc:HGNC:1570]
ENSCJAG00000001649	KNOWN_BY_PROJECTION	protein_coding	SMG8	chromosome:C_jacchus3.2.1:5:1:159171411:1	83928768	83935388	D	SMG8 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:25551]
ENSCJAG00000001614	KNOWN	protein_coding	KLC2	chromosome:C_jacchus3.2.1:11:1:130397257:1	121974438	121985694	D	Kinesin light chain 2 isoform 1 {ECO:0000313|EMBL:JAB11517.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037407}  [Source:UniProtKB/TrEMBL;Acc:F6W0Z1]
ENSCJAG00000018776	KNOWN_BY_PROJECTION	protein_coding	IQCE	chromosome:C_jacchus3.2.1:2:1:204313951:1	17966497	18016014	D	IQ motif containing E [Source:HGNC Symbol;Acc:HGNC:29171]
ENSCJAG00000009849	KNOWN_BY_PROJECTION	protein_coding	MVK	chromosome:C_jacchus3.2.1:9:1:124281992:1	99693471	99718958	D	mevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]
ENSCJAG00000001358	KNOWN	protein_coding	HPS3	chromosome:C_jacchus3.2.1:17:1:74750902:1	28084642	28126522	R	Hermansky-Pudlak syndrome 3 protein {ECO:0000313|EMBL:JAB19895.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002407}  [Source:UniProtKB/TrEMBL;Acc:F7I2C5]
ENSCJAG00000021033	KNOWN	protein_coding	RBPJ	chromosome:C_jacchus3.2.1:3:1:190850796:1	164580775	164691269	R	Recombining binding protein suppressor of hairless isoform 4 {ECO:0000313|EMBL:JAB04611.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039188}  [Source:UniProtKB/TrEMBL;Acc:F7GV30]
ENSCJAG00000001007	KNOWN	protein_coding	HCCS	chromosome:C_jacchus3.2.1:X:1:142054208:1	9039292	9049458	D	Cytochrome c-type heme lyase {ECO:0000313|EMBL:JAB04164.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001731}  [Source:UniProtKB/TrEMBL;Acc:F6XSM6]
ENSCJAG00000035998	KNOWN	protein_coding	GDPD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	83942904	84026243	D	Glycerophosphodiester phosphodiesterase domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB12556.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002909}  [Source:UniProtKB/TrEMBL;Acc:F7HZK1]
ENSCJAG00000020376	KNOWN_BY_PROJECTION	protein_coding	GPR107	chromosome:C_jacchus3.2.1:1:1:210400635:1	174056366	174134609	D	G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
ENSCJAG00000017427	NOVEL	protein_coding	ENSCJAG00000017427	chromosome:C_jacchus3.2.1:7:1:155834243:1	102917072	103010998	D	<no descrition>
ENSCJAG00000021059	KNOWN	protein_coding	SMIM20	chromosome:C_jacchus3.2.1:3:1:190850796:1	165101558	165119401	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050846}; Uncharacterized protein C4orf52 {ECO:0000313|EMBL:JAB12056.1}  [Source:UniProtKB/TrEMBL;Acc:F7FNI8]
ENSCJAG00000020381	NOVEL	pseudogene	ENSCJAG00000020381	chromosome:C_jacchus3.2.1:1:1:210400635:1	174092947	174093344	D	<no descrition>
ENSCJAG00000020383	NOVEL	pseudogene	ENSCJAG00000020383	chromosome:C_jacchus3.2.1:1:1:210400635:1	174135945	174136991	D	<no descrition>
ENSCJAG00000020385	NOVEL	pseudogene	ENSCJAG00000020385	chromosome:C_jacchus3.2.1:1:1:210400635:1	174142791	174143232	R	<no descrition>
ENSCJAG00000001618	KNOWN	protein_coding	YPEL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	84043625	84106952	D	Protein yippee-like {ECO:0000256|RuleBase:RU110713}  [Source:UniProtKB/TrEMBL;Acc:F7I6P9]
ENSCJAG00000020388	KNOWN	protein_coding	NCS1	chromosome:C_jacchus3.2.1:1:1:210400635:1	174198927	174236178	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037900}  [Source:UniProtKB/TrEMBL;Acc:F6WGJ6]
ENSCJAG00000011434	KNOWN_BY_PROJECTION	protein_coding	PKHD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	52831399	53352635	R	polycystic kidney and hepatic disease 1 (autosomal recessive) [Source:HGNC Symbol;Acc:HGNC:9016]
ENSCJAG00000020392	KNOWN_BY_PROJECTION	protein_coding	ZNF717	chromosome:C_jacchus3.2.1:1:1:210400635:1	174312443	174318048	D	zinc finger protein 717 [Source:HGNC Symbol;Acc:HGNC:29448]
ENSCJAG00000034289	KNOWN_BY_PROJECTION	protein_coding	HAVCR1	chromosome:C_jacchus3.2.1:2:1:204313951:1	18022150	18025359	R	hepatitis A virus cellular receptor 1 [Source:HGNC Symbol;Acc:HGNC:17866]
ENSCJAG00000001025	KNOWN_BY_PROJECTION	protein_coding	ARHGAP6	chromosome:C_jacchus3.2.1:X:1:142054208:1	9044519	9188866	R	Rho GTPase activating protein 6 [Source:HGNC Symbol;Acc:HGNC:676]
ENSCJAG00000018791	KNOWN_BY_PROJECTION	protein_coding	HAVCR2	chromosome:C_jacchus3.2.1:2:1:204313951:1	18044843	18067844	R	hepatitis A virus cellular receptor 2 [Source:HGNC Symbol;Acc:HGNC:18437]
ENSCJAG00000001599	KNOWN	protein_coding	RAB1B	chromosome:C_jacchus3.2.1:11:1:130397257:1	121986389	121995682	D	Ras-related protein Rab-1B {ECO:0000313|EMBL:JAB10387.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002870}  [Source:UniProtKB/TrEMBL;Acc:F7I6T1]
ENSCJAG00000018815	KNOWN	protein_coding	MED7	chromosome:C_jacchus3.2.1:2:1:204313951:1	18113995	18117604	R	Mediator of RNA polymerase II transcription subunit 7 {ECO:0000313|EMBL:JAB10860.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044361}  [Source:UniProtKB/TrEMBL;Acc:F7FJ65]
ENSCJAG00000018822	KNOWN_BY_PROJECTION	protein_coding	FAM71B	chromosome:C_jacchus3.2.1:2:1:204313951:1	18140197	18144405	R	family with sequence similarity 71, member B [Source:HGNC Symbol;Acc:HGNC:28397]
ENSCJAG00000001554	KNOWN_BY_PROJECTION	protein_coding	DHX40	chromosome:C_jacchus3.2.1:5:1:159171411:1	84258811	84306822	D	DEAH (Asp-Glu-Ala-His) box polypeptide 40 [Source:HGNC Symbol;Acc:HGNC:18018]
ENSCJAG00000020393	NOVEL	protein_coding	ENSCJAG00000020393	chromosome:C_jacchus3.2.1:1:1:210400635:1	174380663	174433108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037906}  [Source:UniProtKB/TrEMBL;Acc:F6WG94]
ENSCJAG00000001576	KNOWN_BY_PROJECTION	protein_coding	CNIH2	chromosome:C_jacchus3.2.1:11:1:130397257:1	121996608	122004197	D	cornichon family AMPA receptor auxiliary protein 2 [Source:HGNC Symbol;Acc:HGNC:28744]
ENSCJAG00000018825	KNOWN_BY_PROJECTION	protein_coding	ITK	chromosome:C_jacchus3.2.1:2:1:204313951:1	18158612	18236365	D	IL2-inducible T-cell kinase [Source:HGNC Symbol;Acc:HGNC:6171]
ENSCJAG00000021061	KNOWN_BY_PROJECTION	protein_coding	SEL1L3	chromosome:C_jacchus3.2.1:3:1:190850796:1	165186679	165334585	D	sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
ENSCJAG00000020578	KNOWN_BY_PROJECTION	protein_coding	HMCN2	chromosome:C_jacchus3.2.1:1:1:210400635:1	174479868	174531763	D	hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
ENSCJAG00000008158	NOVEL	protein_coding	ENSCJAG00000008158	chromosome:C_jacchus3.2.1:14:1:108792865:1	83302253	83304273	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015077}  [Source:UniProtKB/TrEMBL;Acc:F7F2Q0]
ENSCJAG00000001426	KNOWN	protein_coding	HLTF	chromosome:C_jacchus3.2.1:17:1:74750902:1	28148744	28202876	D	Helicase-like transcription factor {ECO:0000313|EMBL:JAB03689.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002611}  [Source:UniProtKB/TrEMBL;Acc:F7I6T8]
ENSCJAG00000008148	KNOWN_BY_PROJECTION	protein_coding	POMC	chromosome:C_jacchus3.2.1:14:1:108792865:1	83331990	83340722	D	proopiomelanocortin [Source:HGNC Symbol;Acc:HGNC:9201]
ENSCJAG00000017440	NOVEL	protein_coding	ENSCJAG00000017440	chromosome:C_jacchus3.2.1:7:1:155834243:1	103027322	103046006	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032220}  [Source:UniProtKB/TrEMBL;Acc:F7EEX7]
ENSCJAG00000001544	KNOWN	protein_coding	YIF1A	chromosome:C_jacchus3.2.1:11:1:130397257:1	122004564	122009088	R	Protein YIF1A {ECO:0000313|EMBL:JAB13005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002808}  [Source:UniProtKB/TrEMBL;Acc:F7IBI7]
ENSCJAG00000008127	KNOWN_BY_PROJECTION	protein_coding	EFR3B	chromosome:C_jacchus3.2.1:14:1:108792865:1	83348618	83416041	R	EFR3 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29155]
ENSCJAG00000001467	KNOWN	protein_coding	GYG1	chromosome:C_jacchus3.2.1:17:1:74750902:1	28205655	28244939	R	Glycogenin-1 isoform 1 {ECO:0000313|EMBL:JAB16109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002669}  [Source:UniProtKB/TrEMBL;Acc:F7I236]
ENSCJAG00000008113	NOVEL	pseudogene	ENSCJAG00000008113	chromosome:C_jacchus3.2.1:14:1:108792865:1	83494714	83495587	D	<no descrition>
ENSCJAG00000008094	KNOWN	protein_coding	DNAJC27	chromosome:C_jacchus3.2.1:14:1:108792865:1	83545029	83570563	D	DnaJ homolog subfamily C member 27 isoform 1 {ECO:0000313|EMBL:JAB10747.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014966}  [Source:UniProtKB/TrEMBL;Acc:F7ISW3]
ENSCJAG00000009687	KNOWN	protein_coding	TMEM55B	chromosome:C_jacchus3.2.1:10:1:132174527:1	44836323	44839965	R	Transmembrane protein 55B isoform 1 {ECO:0000313|EMBL:JAB11261.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017797}  [Source:UniProtKB/TrEMBL;Acc:F7I551]
ENSCJAG00000018862	KNOWN_BY_PROJECTION	protein_coding	CYFIP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	18250015	18389469	D	cytoplasmic FMR1 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:13760]
ENSCJAG00000009767	KNOWN_BY_PROJECTION	protein_coding	TRPV4	chromosome:C_jacchus3.2.1:9:1:124281992:1	99903838	99968497	R	transient receptor potential cation channel, subfamily V, member 4 [Source:HGNC Symbol;Acc:HGNC:18083]
ENSCJAG00000001505	KNOWN	protein_coding	CLTC	chromosome:C_jacchus3.2.1:5:1:159171411:1	84320022	84404233	D	Clathrin heavy chain {ECO:0000256|PIRNR:PIRNR002290}  [Source:UniProtKB/TrEMBL;Acc:F7IKY7]
ENSCJAG00000020554	KNOWN	protein_coding	ASS1	chromosome:C_jacchus3.2.1:1:1:210400635:1	174548600	174623722	D	Argininosuccinate synthase {ECO:0000313|EMBL:JAB04470.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051295}  [Source:UniProtKB/TrEMBL;Acc:F6V047]
ENSCJAG00000008027	KNOWN_BY_PROJECTION	protein_coding	ADCY3	chromosome:C_jacchus3.2.1:14:1:108792865:1	83598652	83710133	D	adenylate cyclase 3 [Source:HGNC Symbol;Acc:HGNC:234]
ENSCJAG00000001501	KNOWN_BY_PROJECTION	protein_coding	CPA3	chromosome:C_jacchus3.2.1:17:1:74750902:1	28348732	28379939	R	carboxypeptidase A3 (mast cell) [Source:HGNC Symbol;Acc:HGNC:2298]
ENSCJAG00000001510	KNOWN_BY_PROJECTION	protein_coding	CPB1	chromosome:C_jacchus3.2.1:17:1:74750902:1	28387148	28418488	R	carboxypeptidase B1 (tissue) [Source:HGNC Symbol;Acc:HGNC:2299]
ENSCJAG00000017502	KNOWN	protein_coding	GADD45A	chromosome:C_jacchus3.2.1:7:1:155834243:1	103299374	103302621	D	Growth arrest and DNA damage-inducible protein GADD45 alpha isoform 1 {ECO:0000313|EMBL:JAB01913.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032245}  [Source:UniProtKB/TrEMBL;Acc:F7E1K0]
ENSCJAG00000018029	KNOWN	protein_coding	SUFU	chromosome:C_jacchus3.2.1:12:1:121768101:1	89888462	90015974	D	Suppressor of fused homolog {ECO:0000256|PIRNR:PIRNR011844}  [Source:UniProtKB/TrEMBL;Acc:F6TSH4]
ENSCJAG00000017513	KNOWN	protein_coding	GNG12	chromosome:C_jacchus3.2.1:7:1:155834243:1	103316409	103448604	R	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F7E106]
ENSCJAG00000001517	KNOWN_BY_PROJECTION	protein_coding	AGTR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	28500859	28544897	R	angiotensin II receptor, type 1 [Source:HGNC Symbol;Acc:HGNC:336]
ENSCJAG00000032165	NOVEL	pseudogene	ENSCJAG00000032165	chromosome:C_jacchus3.2.1:3:1:190850796:1	165423484	165423895	R	<no descrition>
ENSCJAG00000022959	KNOWN	protein_coding	DIRAS3	chromosome:C_jacchus3.2.1:7:1:155834243:1	103644851	103649629	R	GTP-binding protein Di-Ras3 {ECO:0000313|EMBL:JAB07142.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041514}  [Source:UniProtKB/TrEMBL;Acc:F7GHS1]
ENSCJAG00000001551	NOVEL	pseudogene	ENSCJAG00000001551	chromosome:C_jacchus3.2.1:5:1:159171411:1	84369273	84370323	D	<no descrition>
ENSCJAG00000001503	KNOWN	protein_coding	PTRH2	chromosome:C_jacchus3.2.1:5:1:159171411:1	84406630	84417413	R	Peptidyl-tRNA hydrolase 2, mitochondrial {ECO:0000313|EMBL:JAB17071.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002679}  [Source:UniProtKB/TrEMBL;Acc:F7HZT2]
ENSCJAG00000001522	NOVEL	pseudogene	ENSCJAG00000001522	chromosome:C_jacchus3.2.1:17:1:74750902:1	28731175	28732175	D	<no descrition>
ENSCJAG00000009676	KNOWN	protein_coding	PNP	chromosome:C_jacchus3.2.1:10:1:132174527:1	44850169	44857374	D	Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}  [Source:UniProtKB/TrEMBL;Acc:F7IC61]
ENSCJAG00000009666	NOVEL	pseudogene	ENSCJAG00000009666	chromosome:C_jacchus3.2.1:10:1:132174527:1	44888672	44889322	D	<no descrition>
ENSCJAG00000013366	KNOWN_BY_PROJECTION	protein_coding	SLC34A2	chromosome:C_jacchus3.2.1:3:1:190850796:1	165434895	165459970	R	solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
ENSCJAG00000009659	KNOWN_BY_PROJECTION	protein_coding	RNASE9	chromosome:C_jacchus3.2.1:10:1:132174527:1	44915384	44920659	R	ribonuclease, RNase A family, 9 (non-active) [Source:HGNC Symbol;Acc:HGNC:20673]
ENSCJAG00000017517	KNOWN	protein_coding	WLS	chromosome:C_jacchus3.2.1:7:1:155834243:1	103699640	103830420	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032307}  [Source:UniProtKB/TrEMBL;Acc:F7H1N9]
ENSCJAG00000009654	KNOWN_BY_PROJECTION	protein_coding	OR6S1	chromosome:C_jacchus3.2.1:10:1:132174527:1	44972431	44973925	R	olfactory receptor, family 6, subfamily S, member 1 [Source:HGNC Symbol;Acc:HGNC:15363]
ENSCJAG00000001479	KNOWN	protein_coding	VMP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	84417420	84550015	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043481}; Vacuole membrane protein 1 {ECO:0000313|EMBL:JAB15625.1}  [Source:UniProtKB/TrEMBL;Acc:F7I5H6]
ENSCJAG00000009650	KNOWN	protein_coding	RAB1	chromosome:C_jacchus3.2.1:10:1:132174527:1	45000747	45022259	D	ribonuclease 4 precursor  [Source:RefSeq peptide;Acc:NP_001257853]
ENSCJAG00000037398	KNOWN	protein_coding	ANG	chromosome:C_jacchus3.2.1:10:1:132174527:1	45008391	45015181	D	Callithrix jacchus angiogenin, ribonuclease, RNase A family, 5 (ANG), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001270923]
ENSCJAG00000001538	KNOWN	protein_coding	TMEM151A	chromosome:C_jacchus3.2.1:11:1:130397257:1	122012172	122015813	D	Transmembrane protein 151A {ECO:0000313|EMBL:JAB07244.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002741}  [Source:UniProtKB/TrEMBL;Acc:F7IQK5]
ENSCJAG00000009649	KNOWN_BY_PROJECTION	protein_coding	EDDM3A	chromosome:C_jacchus3.2.1:10:1:132174527:1	45030357	45056094	D	epididymal protein 3A [Source:HGNC Symbol;Acc:HGNC:16978]
ENSCJAG00000009645	NOVEL	protein_coding	RNASE6	chromosome:C_jacchus3.2.1:10:1:132174527:1	45062566	45063984	D	Ribonuclease A D1 {ECO:0000313|EMBL:CDG31989.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017667}  [Source:UniProtKB/TrEMBL;Acc:F7HRN4]
ENSCJAG00000018920	NOVEL	pseudogene	ENSCJAG00000018920	chromosome:C_jacchus3.2.1:2:1:204313951:1	18316823	18317869	D	<no descrition>
ENSCJAG00000009640	KNOWN	protein_coding	RNASE1	chromosome:C_jacchus3.2.1:10:1:132174527:1	45071170	45072684	R	Ribonuclease A C1 {ECO:0000313|EMBL:CDG31988.1}; Ribonuclease pancreatic {ECO:0000313|EMBL:JAB02473.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044735}  [Source:UniProtKB/TrEMBL;Acc:F7GJ91]
ENSCJAG00000018923	KNOWN_BY_PROJECTION	protein_coding	FNDC9	chromosome:C_jacchus3.2.1:2:1:204313951:1	18332707	18335588	R	fibronectin type III domain containing 9 [Source:HGNC Symbol;Acc:HGNC:33547]
ENSCJAG00000009638	NOVEL	protein_coding	RNASE2	chromosome:C_jacchus3.2.1:10:1:132174527:1	45110927	45111855	D	Non-secretory ribonuclease {ECO:0000313|Ensembl:ENSCJAP00000017651}; Ribonuclease A F1 {ECO:0000313|EMBL:CDG31992.1}  [Source:UniProtKB/TrEMBL;Acc:F7HVT5]
ENSCJAG00000001524	KNOWN	protein_coding	ZIC1	chromosome:C_jacchus3.2.1:17:1:74750902:1	29786723	29948416	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002716}; Zinc finger protein ZIC 1 {ECO:0000313|EMBL:JAB25683.1}  [Source:UniProtKB/TrEMBL;Acc:F7IQP6]
ENSCJAG00000018926	KNOWN_BY_PROJECTION	protein_coding	NIPAL4	chromosome:C_jacchus3.2.1:2:1:204313951:1	18435208	18450013	D	NIPA-like domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28018]
ENSCJAG00000001049	NOVEL	protein_coding	AMELX	chromosome:C_jacchus3.2.1:X:1:142054208:1	9218423	9226084	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001811}  [Source:UniProtKB/TrEMBL;Acc:F7CBD9]
ENSCJAG00000001529	KNOWN_BY_PROJECTION	protein_coding	ZIC4	chromosome:C_jacchus3.2.1:17:1:74750902:1	29795129	29815018	D	Zic family member 4 [Source:HGNC Symbol;Acc:HGNC:20393]
ENSCJAG00000034889	NOVEL	pseudogene	ENSCJAG00000034889	chromosome:C_jacchus3.2.1:17:1:74750902:1	30089108	30089927	D	<no descrition>
ENSCJAG00000001530	NOVEL	protein_coding	ENSCJAG00000001530	chromosome:C_jacchus3.2.1:17:1:74750902:1	30487149	30487820	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002723}  [Source:UniProtKB/TrEMBL;Acc:F7IQN9]
ENSCJAG00000017542	KNOWN_BY_PROJECTION	protein_coding	RPE65	chromosome:C_jacchus3.2.1:7:1:155834243:1	104016811	104037213	R	retinal pigment epithelium-specific protein 65kDa [Source:HGNC Symbol;Acc:HGNC:10294]
ENSCJAG00000018051	NOVEL	protein_coding	ENSCJAG00000018051	chromosome:C_jacchus3.2.1:12:1:121768101:1	89941737	89942257	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040915}  [Source:UniProtKB/TrEMBL;Acc:F7HZV4]
ENSCJAG00000001534	KNOWN_BY_PROJECTION	protein_coding	PLSCR5	chromosome:C_jacchus3.2.1:17:1:74750902:1	30594793	30626102	D	phospholipid scramblase family, member 5 [Source:HGNC Symbol;Acc:HGNC:19952]
ENSCJAG00000009609	KNOWN	protein_coding	METTL17	chromosome:C_jacchus3.2.1:10:1:132174527:1	45154007	45160904	D	Methyltransferase-like protein 17, mitochondrial isoform 2 {ECO:0000313|EMBL:JAB13831.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017648}  [Source:UniProtKB/TrEMBL;Acc:F7HY35]
ENSCJAG00000001496	KNOWN	protein_coding	SLC29A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	122016701	122099946	R	Equilibrative nucleoside transporter 2 {ECO:0000313|EMBL:JAB13613.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046811}  [Source:UniProtKB/TrEMBL;Acc:F7HMJ7]
ENSCJAG00000018068	KNOWN	protein_coding	SFXN2	chromosome:C_jacchus3.2.1:12:1:121768101:1	90019694	90127365	D	Sideroflexin-2 {ECO:0000313|EMBL:JAB02635.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033398}  [Source:UniProtKB/TrEMBL;Acc:F6SJM0]
ENSCJAG00000001542	KNOWN_BY_PROJECTION	protein_coding	PLSCR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	30661336	30757193	D	phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]
ENSCJAG00000001537	KNOWN_BY_PROJECTION	protein_coding	CD248	chromosome:C_jacchus3.2.1:11:1:130397257:1	122034093	122036685	R	CD248 molecule, endosialin [Source:HGNC Symbol;Acc:HGNC:18219]
ENSCJAG00000008019	KNOWN_BY_PROJECTION	protein_coding	CENPO	chromosome:C_jacchus3.2.1:14:1:108792865:1	83711925	83730040	R	centromere protein O [Source:HGNC Symbol;Acc:HGNC:28152]
ENSCJAG00000001061	KNOWN_BY_PROJECTION	protein_coding	MSL3	chromosome:C_jacchus3.2.1:X:1:142054208:1	9719913	9737320	D	male-specific lethal 3 homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:7370]
ENSCJAG00000008012	KNOWN	protein_coding	PTRHD1	chromosome:C_jacchus3.2.1:14:1:108792865:1	83730942	83733383	D	Putative peptidyl-tRNA hydrolase PTRHD1 {ECO:0000313|EMBL:JAB06140.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014802}  [Source:UniProtKB/TrEMBL;Acc:F7IBH2]
ENSCJAG00000018932	KNOWN_BY_PROJECTION	protein_coding	ADAM19	chromosome:C_jacchus3.2.1:2:1:204313951:1	18456885	18556950	R	ADAM metallopeptidase domain 19 [Source:HGNC Symbol;Acc:HGNC:197]
ENSCJAG00000001528	KNOWN_BY_PROJECTION	protein_coding	RIN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	122052965	122057723	R	Ras and Rab interactor 1 [Source:HGNC Symbol;Acc:HGNC:18749]
ENSCJAG00000018057	KNOWN	protein_coding	TRIM8	chromosome:C_jacchus3.2.1:12:1:121768101:1	90030654	90046768	D	Putative E3 ubiquitin-protein ligase TRIM8 {ECO:0000313|EMBL:JAB11371.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033372}  [Source:UniProtKB/TrEMBL;Acc:F6SVX4]
ENSCJAG00000018065	KNOWN	protein_coding	ARL3	chromosome:C_jacchus3.2.1:12:1:121768101:1	90063506	90105184	R	ADP-ribosylation factor-like protein 3 {ECO:0000313|EMBL:JAB02354.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033382}  [Source:UniProtKB/TrEMBL;Acc:F6SUZ3]
ENSCJAG00000001458	KNOWN	protein_coding	TUBD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	84578699	84613275	R	Tubulin delta chain isoform 2 {ECO:0000313|EMBL:JAB42055.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002627}  [Source:UniProtKB/TrEMBL;Acc:F7I4J4]
ENSCJAG00000001511	KNOWN_BY_PROJECTION	protein_coding	BRMS1	chromosome:C_jacchus3.2.1:11:1:130397257:1	122058200	122066858	R	breast cancer metastasis suppressor 1 [Source:HGNC Symbol;Acc:HGNC:17262]
ENSCJAG00000018079	KNOWN	protein_coding	WBP1L	chromosome:C_jacchus3.2.1:12:1:121768101:1	90133476	90212876	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033410}; WW domain binding protein 1-like isoform 1 {ECO:0000313|EMBL:JAB11183.1}  [Source:UniProtKB/TrEMBL;Acc:F6RXP8]
ENSCJAG00000007912	KNOWN	protein_coding	NCOA1	chromosome:C_jacchus3.2.1:14:1:108792865:1	83754455	83981578	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014793}  [Source:UniProtKB/TrEMBL;Acc:F7IG69]
ENSCJAG00000013359	NOVEL	protein_coding	ENSCJAG00000013359	chromosome:C_jacchus3.2.1:3:1:190850796:1	165500546	165501235	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024539}  [Source:UniProtKB/TrEMBL;Acc:F7GSM1]
ENSCJAG00000017579	KNOWN_BY_PROJECTION	protein_coding	DEPDC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	104064738	104090168	R	DEP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:22949]
ENSCJAG00000020542	KNOWN	protein_coding	FUBP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	174697439	174757544	D	Far upstream element-binding protein 3 {ECO:0000313|EMBL:JAB20642.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038189}  [Source:UniProtKB/TrEMBL;Acc:F7I030]
ENSCJAG00000013271	KNOWN_BY_PROJECTION	protein_coding	ANAPC4	chromosome:C_jacchus3.2.1:3:1:190850796:1	165702130	165742157	R	anaphase promoting complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:19990]
ENSCJAG00000001416	KNOWN	protein_coding	RPS6KB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	84613469	84672206	D	Ribosomal protein S6 kinase {ECO:0000256|PIRNR:PIRNR000605}  [Source:UniProtKB/TrEMBL;Acc:F6ZZT2]
ENSCJAG00000034244	NOVEL	protein_coding	ENSCJAG00000034244	chromosome:C_jacchus3.2.1:7:1:155834243:1	105218354	105572277	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032540}  [Source:UniProtKB/TrEMBL;Acc:F7GJZ9]
ENSCJAG00000011432	NOVEL	protein_coding	ENSCJAG00000011432	chromosome:C_jacchus3.2.1:4:1:171630274:1	53474879	53476374	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021007}  [Source:UniProtKB/TrEMBL;Acc:F6Q7S9]
ENSCJAG00000018960	KNOWN_BY_PROJECTION	protein_coding	SOX30	chromosome:C_jacchus3.2.1:2:1:204313951:1	18606737	18689545	R	SRY (sex determining region Y)-box 30 [Source:HGNC Symbol;Acc:HGNC:30635]
ENSCJAG00000001508	KNOWN_BY_PROJECTION	protein_coding	B4GAT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	122067122	122069694	R	beta-1,4-glucuronyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15685]
ENSCJAG00000011427	KNOWN	protein_coding	IL17F	chromosome:C_jacchus3.2.1:4:1:171630274:1	53521343	53528706	R	Interleukin-17F  [Source:UniProtKB/Swiss-Prot;Acc:A6N6I9]
ENSCJAG00000017666	NOVEL	pseudogene	ENSCJAG00000017666	chromosome:C_jacchus3.2.1:7:1:155834243:1	105614174	105614661	D	<no descrition>
ENSCJAG00000033152	NOVEL	protein_coding	ENSCJAG00000033152	chromosome:C_jacchus3.2.1:17:1:74750902:1	30772700	30789680	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043976}  [Source:UniProtKB/TrEMBL;Acc:F7INZ8]
ENSCJAG00000017648	KNOWN_BY_PROJECTION	protein_coding	LRRC7	chromosome:C_jacchus3.2.1:7:1:155834243:1	105686588	105825110	D	leucine rich repeat containing 7 [Source:HGNC Symbol;Acc:HGNC:18531]
ENSCJAG00000001482	KNOWN_BY_PROJECTION	protein_coding	NPAS4	chromosome:C_jacchus3.2.1:11:1:130397257:1	122147119	122152738	D	neuronal PAS domain protein 4 [Source:HGNC Symbol;Acc:HGNC:18983]
ENSCJAG00000018089	KNOWN	protein_coding	CYP17A1	chromosome:C_jacchus3.2.1:12:1:121768101:1	90225246	90234048	R	Callithrix jacchus cytochrome P450, family 17, subfamily A, polypeptide 1 (CYP17A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001267768]
ENSCJAG00000011389	NOVEL	protein_coding	ENSCJAG00000011389	chromosome:C_jacchus3.2.1:4:1:171630274:1	53550695	53572289	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020994}  [Source:UniProtKB/TrEMBL;Acc:F7G835]
ENSCJAG00000018969	KNOWN_BY_PROJECTION	protein_coding	C5orf52	chromosome:C_jacchus3.2.1:2:1:204313951:1	18692822	18701211	D	chromosome 5 open reading frame 52 [Source:HGNC Symbol;Acc:HGNC:35121]
ENSCJAG00000021895	NOVEL	pseudogene	ENSCJAG00000021895	chromosome:C_jacchus3.2.1:2:1:204313951:1	18713432	18714266	R	<no descrition>
ENSCJAG00000001558	KNOWN	protein_coding	PLSCR4	chromosome:C_jacchus3.2.1:17:1:74750902:1	30799796	30903080	D	Phospholipid scramblase 4 isoform a {ECO:0000313|EMBL:JAB13785.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042726}  [Source:UniProtKB/TrEMBL;Acc:F6WSJ0]
ENSCJAG00000017669	KNOWN	protein_coding	LRRC40	chromosome:C_jacchus3.2.1:7:1:155834243:1	105847150	105914762	R	Leucine-rich repeat-containing protein 40 {ECO:0000313|EMBL:JAB26395.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032616}  [Source:UniProtKB/TrEMBL;Acc:F7ER22]
ENSCJAG00000020540	KNOWN_BY_PROJECTION	protein_coding	PRDM12	chromosome:C_jacchus3.2.1:1:1:210400635:1	174777930	174795820	D	PR domain containing 12 [Source:HGNC Symbol;Acc:HGNC:13997]
ENSCJAG00000034092	KNOWN	protein_coding	GLTP	chromosome:C_jacchus3.2.1:9:1:124281992:1	99986113	100015722	R	Glycolipid transfer protein {ECO:0000313|EMBL:JAB10314.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002848}  [Source:UniProtKB/TrEMBL;Acc:F7IBE6]
ENSCJAG00000032128	KNOWN_BY_PROJECTION	protein_coding	RNFT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	84677153	84689613	R	ring finger protein, transmembrane 1 [Source:HGNC Symbol;Acc:HGNC:30206]
ENSCJAG00000020537	KNOWN_BY_PROJECTION	protein_coding	EXOSC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	174809709	174820997	D	exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]
ENSCJAG00000018973	KNOWN_BY_PROJECTION	protein_coding	THG1L	chromosome:C_jacchus3.2.1:2:1:204313951:1	18739712	18749431	D	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26053]
ENSCJAG00000009739	KNOWN_BY_PROJECTION	protein_coding	TCHP	chromosome:C_jacchus3.2.1:9:1:124281992:1	100032725	100049626	D	trichoplein, keratin filament binding [Source:HGNC Symbol;Acc:HGNC:28135]
ENSCJAG00000001470	KNOWN_BY_PROJECTION	protein_coding	MRPL11	chromosome:C_jacchus3.2.1:11:1:130397257:1	122163786	122167359	R	mitochondrial ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:14042]
ENSCJAG00000003885	KNOWN	protein_coding	PRPS2	chromosome:C_jacchus3.2.1:X:1:142054208:1	10789795	10823226	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007122}  [Source:UniProtKB/TrEMBL;Acc:F6S8U8]
ENSCJAG00000001578	KNOWN	protein_coding	PLOD2	chromosome:C_jacchus3.2.1:17:1:74750902:1	30932174	31034075	D	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 2 {ECO:0000313|EMBL:JAB05985.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002851}  [Source:UniProtKB/TrEMBL;Acc:F7I948]
ENSCJAG00000007772	KNOWN_BY_PROJECTION	protein_coding	ITSN2	chromosome:C_jacchus3.2.1:14:1:108792865:1	84191061	84362754	D	intersectin 2 [Source:HGNC Symbol;Acc:HGNC:6184]
ENSCJAG00000020525	KNOWN	protein_coding	ABL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	174828376	175009341	D	Tyrosine-protein kinase ABL1 isoform b {ECO:0000313|EMBL:JAB05592.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038149}  [Source:UniProtKB/TrEMBL;Acc:F7I4W0]
ENSCJAG00000017704	KNOWN	protein_coding	SRSF11	chromosome:C_jacchus3.2.1:7:1:155834243:1	105914852	105961465	D	Serine/arginine-rich splicing factor 11 isoform 1 {ECO:0000313|EMBL:JAB21591.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032786}  [Source:UniProtKB/TrEMBL;Acc:F7FW57]
ENSCJAG00000001460	KNOWN	protein_coding	PELI3	chromosome:C_jacchus3.2.1:11:1:130397257:1	122190795	122202777	D	E3 ubiquitin-protein ligase pellino homolog 3 isoform 2 {ECO:0000313|EMBL:JAB13116.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002609}  [Source:UniProtKB/TrEMBL;Acc:F7I6U0]
ENSCJAG00000020536	KNOWN_BY_PROJECTION	protein_coding	ARL9	chromosome:C_jacchus3.2.1:1:1:210400635:1	174873180	174876247	R	ADP-ribosylation factor-like 9 [Source:HGNC Symbol;Acc:HGNC:23592]
ENSCJAG00000020521	KNOWN_BY_PROJECTION	protein_coding	FIBCD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	175028959	175067779	R	fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
ENSCJAG00000011379	KNOWN_BY_PROJECTION	protein_coding	PAQR8	chromosome:C_jacchus3.2.1:4:1:171630274:1	53652850	53696585	D	progestin and adipoQ receptor family member VIII [Source:HGNC Symbol;Acc:HGNC:15708]
ENSCJAG00000018985	KNOWN_BY_PROJECTION	protein_coding	LSM11	chromosome:C_jacchus3.2.1:2:1:204313951:1	18752952	18766956	D	LSM11, U7 small nuclear RNA associated [Source:HGNC Symbol;Acc:HGNC:30860]
ENSCJAG00000011314	KNOWN_BY_PROJECTION	protein_coding	TRAM2	chromosome:C_jacchus3.2.1:4:1:171630274:1	53660646	53887437	R	translocation associated membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:16855]
ENSCJAG00000009631	KNOWN	protein_coding	GIT2	chromosome:C_jacchus3.2.1:9:1:124281992:1	100073292	100140047	R	ARF GTPase-activating protein GIT2 isoform 4 {ECO:0000313|EMBL:JAB04528.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017836}  [Source:UniProtKB/TrEMBL;Acc:F7HR91]
ENSCJAG00000001350	KNOWN	protein_coding	MED13	chromosome:C_jacchus3.2.1:5:1:159171411:1	84896080	85005902	D	Mediator of RNA polymerase II transcription subunit 13 {ECO:0000313|EMBL:JAB04933.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002500}  [Source:UniProtKB/TrEMBL;Acc:F7ING3]
ENSCJAG00000018990	KNOWN	protein_coding	CLINT1	chromosome:C_jacchus3.2.1:2:1:204313951:1	18800686	18872841	R	Clathrin interactor 1 isoform 2 {ECO:0000313|EMBL:JAB21587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035320}  [Source:UniProtKB/TrEMBL;Acc:F7I6E4]
ENSCJAG00000009600	KNOWN	protein_coding	SLC39A2	chromosome:C_jacchus3.2.1:10:1:132174527:1	45162667	45165292	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017589}; Zinc transporter ZIP2 isoform a {ECO:0000313|EMBL:JAB04930.1}  [Source:UniProtKB/TrEMBL;Acc:F7I9X8]
ENSCJAG00000019014	KNOWN_BY_PROJECTION	protein_coding	UNG	chromosome:C_jacchus3.2.1:2:1:204313951:1	19216898	19217328	R	uracil-DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:12572]
ENSCJAG00000019016	KNOWN	protein_coding	EBF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	19783159	20200080	R	Transcription factor COE1 {ECO:0000313|EMBL:JAB50791.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035335}  [Source:UniProtKB/TrEMBL;Acc:F7I410]
ENSCJAG00000001602	NOVEL	pseudogene	ENSCJAG00000001602	chromosome:C_jacchus3.2.1:17:1:74750902:1	31037479	31037657	R	<no descrition>
ENSCJAG00000035251	NOVEL	protein_coding	ENSCJAG00000035251	chromosome:C_jacchus3.2.1:17:1:74750902:1	32591874	32592775	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046494}  [Source:UniProtKB/TrEMBL;Acc:F7II19]
ENSCJAG00000018107	NOVEL	protein_coding	ENSCJAG00000018107	chromosome:C_jacchus3.2.1:12:1:121768101:1	90246044	90259725	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033471}  [Source:UniProtKB/TrEMBL;Acc:F6QFG4]
ENSCJAG00000001605	KNOWN	protein_coding	C3ORF58	chromosome:C_jacchus3.2.1:17:1:74750902:1	32660554	32690356	R	Deleted in autism protein 1 isoform a {ECO:0000313|EMBL:JAB03015.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002866}  [Source:UniProtKB/TrEMBL;Acc:F7I923]
ENSCJAG00000017783	KNOWN	protein_coding	ANKRD13C	chromosome:C_jacchus3.2.1:7:1:155834243:1	105971123	106085554	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032833}  [Source:UniProtKB/TrEMBL;Acc:F7EC38]
ENSCJAG00000018113	KNOWN_BY_PROJECTION	protein_coding	AS3MT	chromosome:C_jacchus3.2.1:12:1:121768101:1	90264877	90271286	D	arsenite methyltransferase [Source:HGNC Symbol;Acc:HGNC:17452]
ENSCJAG00000009450	KNOWN_BY_PROJECTION	protein_coding	NDRG2	chromosome:C_jacchus3.2.1:10:1:132174527:1	45175240	45232877	R	NDRG family member 2 [Source:HGNC Symbol;Acc:HGNC:14460]
ENSCJAG00000003924	KNOWN_BY_PROJECTION	protein_coding	TLR7	chromosome:C_jacchus3.2.1:X:1:142054208:1	10846462	10868955	D	toll-like receptor 7 [Source:HGNC Symbol;Acc:HGNC:15631]
ENSCJAG00000001611	NOVEL	protein_coding	ENSCJAG00000001611	chromosome:C_jacchus3.2.1:17:1:74750902:1	32739270	32740589	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002873}  [Source:UniProtKB/TrEMBL;Acc:F7I6S7]
ENSCJAG00000018118	NOVEL	protein_coding	ENSCJAG00000018118	chromosome:C_jacchus3.2.1:12:1:121768101:1	90316203	90325103	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033485}  [Source:UniProtKB/TrEMBL;Acc:F6QEL3]
ENSCJAG00000001616	NOVEL	protein_coding	ENSCJAG00000001616	chromosome:C_jacchus3.2.1:17:1:74750902:1	32833298	32833724	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042831}  [Source:UniProtKB/TrEMBL;Acc:F7AM64]
ENSCJAG00000035499	NOVEL	protein_coding	ENSCJAG00000035499	chromosome:C_jacchus3.2.1:12:1:121768101:1	90451151	90477088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033562}  [Source:UniProtKB/TrEMBL;Acc:F6T475]
ENSCJAG00000001381	KNOWN_BY_PROJECTION	protein_coding	DPP3	chromosome:C_jacchus3.2.1:11:1:130397257:1	122205963	122238706	D	dipeptidyl-peptidase 3 [Source:HGNC Symbol;Acc:HGNC:3008]
ENSCJAG00000003929	KNOWN_BY_PROJECTION	protein_coding	TLR8	chromosome:C_jacchus3.2.1:X:1:142054208:1	10886096	10904993	D	toll-like receptor 8 [Source:HGNC Symbol;Acc:HGNC:15632]
ENSCJAG00000019025	KNOWN_BY_PROJECTION	protein_coding	RNF145	chromosome:C_jacchus3.2.1:2:1:204313951:1	20241632	20289706	R	ring finger protein 145 [Source:HGNC Symbol;Acc:HGNC:20853]
ENSCJAG00000001617	KNOWN	protein_coding	SLC9A9	chromosome:C_jacchus3.2.1:17:1:74750902:1	32840764	33437227	D	Sodium/hydrogen exchanger {ECO:0000256|RuleBase:RU003722}  [Source:UniProtKB/TrEMBL;Acc:F7I6Q0]
ENSCJAG00000003934	NOVEL	protein_coding	ENSCJAG00000003934	chromosome:C_jacchus3.2.1:X:1:142054208:1	10947485	10949608	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040731}  [Source:UniProtKB/TrEMBL;Acc:F7HV51]
ENSCJAG00000001636	NOVEL	pseudogene	ENSCJAG00000001636	chromosome:C_jacchus3.2.1:17:1:74750902:1	33587199	33587918	R	<no descrition>
ENSCJAG00000018148	KNOWN	protein_coding	NT5C2	chromosome:C_jacchus3.2.1:12:1:121768101:1	90487447	90610445	R	Cytosolic purine 5'-nucleotidase {ECO:0000313|EMBL:JAB11381.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033619}  [Source:UniProtKB/TrEMBL;Acc:F6RKD1]
ENSCJAG00000011346	KNOWN	protein_coding	EFHC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	53721156	53832386	D	EF-hand domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB10245.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020878}  [Source:UniProtKB/TrEMBL;Acc:F7DXT4]
ENSCJAG00000017808	KNOWN	protein_coding	CTH	chromosome:C_jacchus3.2.1:7:1:155834243:1	106142415	106170456	D	Cystathionine gamma-lyase isoform 1 {ECO:0000313|EMBL:JAB08470.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032921}  [Source:UniProtKB/TrEMBL;Acc:F7H0R1]
ENSCJAG00000007770	KNOWN_BY_PROJECTION	protein_coding	FAM228A	chromosome:C_jacchus3.2.1:14:1:108792865:1	84381121	84390837	R	family with sequence similarity 228, member A [Source:HGNC Symbol;Acc:HGNC:34418]
ENSCJAG00000003941	NOVEL	pseudogene	ENSCJAG00000003941	chromosome:C_jacchus3.2.1:X:1:142054208:1	11261707	11262801	D	<no descrition>
ENSCJAG00000007757	NOVEL	protein_coding	ENSCJAG00000007757	chromosome:C_jacchus3.2.1:14:1:108792865:1	84398643	84438853	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014374}  [Source:UniProtKB/TrEMBL;Acc:F7I9G7]
ENSCJAG00000007745	KNOWN_BY_PROJECTION	protein_coding	PFN4	chromosome:C_jacchus3.2.1:14:1:108792865:1	84439698	84450559	D	profilin family, member 4 [Source:HGNC Symbol;Acc:HGNC:31103]
ENSCJAG00000001639	KNOWN	protein_coding	U2SURP	chromosome:C_jacchus3.2.1:17:1:74750902:1	33652712	33710106	R	U2 snRNP-associated SURP motif-containing protein {ECO:0000313|EMBL:JAB10975.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002961}  [Source:UniProtKB/TrEMBL;Acc:F7HUT9]
ENSCJAG00000007734	KNOWN_BY_PROJECTION	protein_coding	TP53I3	chromosome:C_jacchus3.2.1:14:1:108792865:1	84462979	84488251	D	tumor protein p53 inducible protein 3 [Source:HGNC Symbol;Acc:HGNC:19373]
ENSCJAG00000019057	KNOWN	protein_coding	UBLCP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	20353529	20376307	D	Ubiquitin-like domain-containing CTD phosphatase 1 {ECO:0000313|EMBL:JAB11771.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035389}  [Source:UniProtKB/TrEMBL;Acc:F7HWY6]
ENSCJAG00000011309	KNOWN	protein_coding	TMEM14A	chromosome:C_jacchus3.2.1:4:1:171630274:1	53988547	54004752	D	Transmembrane protein 14A {ECO:0000313|EMBL:JAB10966.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020814}  [Source:UniProtKB/TrEMBL;Acc:F7F4E4]
ENSCJAG00000019062	KNOWN	protein_coding	IL-12B	chromosome:C_jacchus3.2.1:2:1:204313951:1	20408897	20424956	R	Interleukin-12 subunit beta {ECO:0000256|RuleBase:RU281113}  [Source:UniProtKB/TrEMBL;Acc:F7IQ84]
ENSCJAG00000007716	KNOWN	protein_coding	SF3B6	chromosome:C_jacchus3.2.1:14:1:108792865:1	84489159	84497991	D	Pre-mRNA branch site protein p14 {ECO:0000313|EMBL:JAB02775.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014316}  [Source:UniProtKB/TrEMBL;Acc:F7IIW3]
ENSCJAG00000003944	KNOWN_BY_PROJECTION	protein_coding	EGFL6	chromosome:C_jacchus3.2.1:X:1:142054208:1	11567689	11634252	D	EGF-like-domain, multiple 6 [Source:HGNC Symbol;Acc:HGNC:3235]
ENSCJAG00000019081	KNOWN_BY_PROJECTION	protein_coding	ADRA1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	21010331	21068607	D	adrenoceptor alpha 1B [Source:HGNC Symbol;Acc:HGNC:278]
ENSCJAG00000034248	NOVEL	protein_coding	ENSCJAG00000034248	chromosome:C_jacchus3.2.1:2:1:204313951:1	21044262	21045256	R	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7IC96]
ENSCJAG00000008567	KNOWN_BY_PROJECTION	protein_coding	LAMC3	chromosome:C_jacchus3.2.1:1:1:210400635:1	175130042	175210948	D	laminin, gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
ENSCJAG00000019084	KNOWN	protein_coding	TTC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	21107976	21162186	D	Tetratricopeptide repeat protein 1 {ECO:0000313|EMBL:JAB06252.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035453}  [Source:UniProtKB/TrEMBL;Acc:F7II73]
ENSCJAG00000008565	KNOWN	protein_coding	AIF1L	chromosome:C_jacchus3.2.1:1:1:210400635:1	175226441	175236906	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015777}  [Source:UniProtKB/TrEMBL;Acc:F7DC32]
ENSCJAG00000011287	KNOWN	protein_coding	ENSCJAG00000011287	chromosome:C_jacchus3.2.1:4:1:171630274:1	54039287	54128269	R	Glutathione S-transferase {ECO:0000256|RuleBase:RU004454}  [Source:UniProtKB/TrEMBL;Acc:F7FHB4]
ENSCJAG00000001324	KNOWN_BY_PROJECTION	protein_coding	INTS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	85021539	85089066	D	integrator complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:29241]
ENSCJAG00000022946	KNOWN_BY_PROJECTION	protein_coding	PTGER3	chromosome:C_jacchus3.2.1:7:1:155834243:1	106568885	106789505	R	prostaglandin E receptor 3 (subtype EP3) [Source:HGNC Symbol;Acc:HGNC:9595]
ENSCJAG00000019106	KNOWN	protein_coding	PWWP2A	chromosome:C_jacchus3.2.1:2:1:204313951:1	21179261	21231519	R	PWWP domain-containing protein 2A isoform a {ECO:0000313|EMBL:JAB32134.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035471}  [Source:UniProtKB/TrEMBL;Acc:F7IFT9]
ENSCJAG00000013241	KNOWN	protein_coding	ZCCHC4	chromosome:C_jacchus3.2.1:3:1:190850796:1	165752168	165820054	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024357}; Zinc finger CCHC domain-containing protein 4 {ECO:0000313|EMBL:JAB03175.1}  [Source:UniProtKB/TrEMBL;Acc:F7H362]
ENSCJAG00000006356	KNOWN	protein_coding	ZRANB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	106808400	106826559	R	Zinc finger Ran-binding domain-containing protein 2 {ECO:0000256|PIRNR:PIRNR037956}  [Source:UniProtKB/TrEMBL;Acc:F7FZW4]
ENSCJAG00000001292	KNOWN_BY_PROJECTION	protein_coding	BRIP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	85093759	85279741	D	BRCA1 interacting protein C-terminal helicase 1 [Source:HGNC Symbol;Acc:HGNC:20473]
ENSCJAG00000007700	KNOWN	protein_coding	FKBP1B	chromosome:C_jacchus3.2.1:14:1:108792865:1	84502147	84515717	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}  [Source:UniProtKB/TrEMBL;Acc:F7HJV8]
ENSCJAG00000007696	KNOWN_BY_PROJECTION	protein_coding	C2orf44	chromosome:C_jacchus3.2.1:14:1:108792865:1	84524835	84534799	D	chromosome 2 open reading frame 44 [Source:HGNC Symbol;Acc:HGNC:26157]
ENSCJAG00000001709	NOVEL	pseudogene	ENSCJAG00000001709	chromosome:C_jacchus3.2.1:17:1:74750902:1	33748971	33750902	D	<no descrition>
ENSCJAG00000001714	KNOWN	protein_coding	PCOLCE2	chromosome:C_jacchus3.2.1:17:1:74750902:1	33821451	33898585	D	Procollagen C-endopeptidase enhancer 2 {ECO:0000313|EMBL:JAB02717.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003095}  [Source:UniProtKB/TrEMBL;Acc:F7FFH2]
ENSCJAG00000007691	KNOWN_BY_PROJECTION	protein_coding	MFSD2B	chromosome:C_jacchus3.2.1:14:1:108792865:1	84545312	84560665	R	major facilitator superfamily domain containing 2B [Source:HGNC Symbol;Acc:HGNC:37207]
ENSCJAG00000019114	KNOWN_BY_PROJECTION	protein_coding	FABP6	chromosome:C_jacchus3.2.1:2:1:204313951:1	21314026	21365693	D	fatty acid binding protein 6, ileal [Source:HGNC Symbol;Acc:HGNC:3561]
ENSCJAG00000009560	KNOWN_BY_PROJECTION	protein_coding	ANKRD13A	chromosome:C_jacchus3.2.1:9:1:124281992:1	100143101	100185822	D	ankyrin repeat domain 13A [Source:HGNC Symbol;Acc:HGNC:21268]
ENSCJAG00000001281	KNOWN	protein_coding	TBX4	chromosome:C_jacchus3.2.1:5:1:159171411:1	85477087	85504890	R	T-box transcription factor TBX4 {ECO:0000313|EMBL:JAB01745.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002267}  [Source:UniProtKB/TrEMBL;Acc:F7HQP5]
ENSCJAG00000007665	KNOWN	protein_coding	UBXN2A	chromosome:C_jacchus3.2.1:14:1:108792865:1	84572272	84609038	R	UBX domain-containing protein 2A {ECO:0000313|EMBL:JAB13619.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014239}  [Source:UniProtKB/TrEMBL;Acc:F7HVA8]
ENSCJAG00000001737	NOVEL	protein_coding	ENSCJAG00000001737	chromosome:C_jacchus3.2.1:17:1:74750902:1	33883869	33884860	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003099}  [Source:UniProtKB/TrEMBL;Acc:F7FFD4]
ENSCJAG00000001278	NOVEL	pseudogene	ENSCJAG00000001278	chromosome:C_jacchus3.2.1:5:1:159171411:1	85552955	85553665	R	<no descrition>
ENSCJAG00000019119	KNOWN_BY_PROJECTION	protein_coding	CCNJL	chromosome:C_jacchus3.2.1:2:1:204313951:1	21377537	21447087	R	cyclin J-like [Source:HGNC Symbol;Acc:HGNC:25876]
ENSCJAG00000001739	KNOWN_BY_PROJECTION	protein_coding	TRPC1	chromosome:C_jacchus3.2.1:17:1:74750902:1	33911823	33989777	R	transient receptor potential cation channel, subfamily C, member 1 [Source:HGNC Symbol;Acc:HGNC:12333]
ENSCJAG00000006382	KNOWN_BY_PROJECTION	protein_coding	NEGR1	chromosome:C_jacchus3.2.1:7:1:155834243:1	107380315	107744625	R	neuronal growth regulator 1 [Source:HGNC Symbol;Acc:HGNC:17302]
ENSCJAG00000007628	KNOWN	protein_coding	ATAD2B	chromosome:C_jacchus3.2.1:14:1:108792865:1	84632911	84809762	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014190}  [Source:UniProtKB/TrEMBL;Acc:F7I4W1]
ENSCJAG00000006388	NOVEL	protein_coding	ENSCJAG00000006388	chromosome:C_jacchus3.2.1:7:1:155834243:1	109417428	109418401	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011786}  [Source:UniProtKB/TrEMBL;Acc:F7F8H8]
ENSCJAG00000018178	NOVEL	protein_coding	ENSCJAG00000018178	chromosome:C_jacchus3.2.1:12:1:121768101:1	90689975	90704207	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042305}  [Source:UniProtKB/TrEMBL;Acc:F6XIC0]
ENSCJAG00000006400	NOVEL	protein_coding	ENSCJAG00000006400	chromosome:C_jacchus3.2.1:7:1:155834243:1	109861307	109877520	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011801}  [Source:UniProtKB/TrEMBL;Acc:F7DMT6]
ENSCJAG00000031619	NOVEL	protein_coding	ENSCJAG00000031619	chromosome:C_jacchus3.2.1:7:1:155834243:1	109976066	109991646	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011805}  [Source:UniProtKB/TrEMBL;Acc:F7DMS0]
ENSCJAG00000001256	KNOWN_BY_PROJECTION	protein_coding	TBX2	chromosome:C_jacchus3.2.1:5:1:159171411:1	85556485	85565064	R	T-box 2 [Source:HGNC Symbol;Acc:HGNC:11597]
ENSCJAG00000009590	KNOWN	protein_coding	TPPP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	45189760	45191726	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017571}  [Source:UniProtKB/TrEMBL;Acc:F7IA21]
ENSCJAG00000008476	KNOWN	protein_coding	NUP214	chromosome:C_jacchus3.2.1:1:1:210400635:1	175240689	175346071	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049936}  [Source:UniProtKB/TrEMBL;Acc:F7CQZ5]
ENSCJAG00000018192	KNOWN	protein_coding	PCGF6	chromosome:C_jacchus3.2.1:12:1:121768101:1	90721742	90767012	R	Polycomb group RING finger protein 6 isoform a {ECO:0000313|EMBL:JAB05006.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033685}  [Source:UniProtKB/TrEMBL;Acc:F6Q2C6]
ENSCJAG00000023228	NOVEL	protein_coding	RNASE7	chromosome:C_jacchus3.2.1:10:1:132174527:1	45202766	45219553	D	Ribonuclease A E1 {ECO:0000313|EMBL:CDG31990.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041742}  [Source:UniProtKB/TrEMBL;Acc:F7G5S4]
ENSCJAG00000001233	KNOWN_BY_PROJECTION	protein_coding	BCAS3	chromosome:C_jacchus3.2.1:5:1:159171411:1	85885317	86326614	R	breast carcinoma amplified sequence 3 [Source:HGNC Symbol;Acc:HGNC:14347]
ENSCJAG00000003969	KNOWN_BY_PROJECTION	protein_coding	TCEANC	chromosome:C_jacchus3.2.1:X:1:142054208:1	11661763	11665366	D	transcription elongation factor A (SII) N-terminal and central domain containing [Source:HGNC Symbol;Acc:HGNC:28277]
ENSCJAG00000018210	NOVEL	pseudogene	ENSCJAG00000018210	chromosome:C_jacchus3.2.1:12:1:121768101:1	90738605	90739819	R	<no descrition>
ENSCJAG00000003973	KNOWN	protein_coding	RAB9A	chromosome:C_jacchus3.2.1:X:1:142054208:1	11687533	11717337	D	Ras-related protein Rab-9A {ECO:0000313|EMBL:JAB02748.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007199}  [Source:UniProtKB/TrEMBL;Acc:F6QQX2]
ENSCJAG00000006412	KNOWN	protein_coding	FPGT	chromosome:C_jacchus3.2.1:7:1:155834243:1	110004783	110351201	D	Callithrix jacchus TNNI3 interacting kinase (TNNI3K), mRNA. [Source:RefSeq mRNA;Acc:NM_001204802]
ENSCJAG00000009398	KNOWN_BY_PROJECTION	protein_coding	ARHGEF40	chromosome:C_jacchus3.2.1:10:1:132174527:1	45231742	45253682	D	Rho guanine nucleotide exchange factor (GEF) 40 [Source:HGNC Symbol;Acc:HGNC:25516]
ENSCJAG00000001762	KNOWN	protein_coding	PLS1	chromosome:C_jacchus3.2.1:17:1:74750902:1	33998522	34113604	R	Plastin-1 {ECO:0000313|EMBL:JAB09206.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003195}  [Source:UniProtKB/TrEMBL;Acc:F7HFN7]
ENSCJAG00000018213	KNOWN	protein_coding	TAF5	chromosome:C_jacchus3.2.1:12:1:121768101:1	90783059	90804303	D	Transcription initiation factor TFIID subunit 5 {ECO:0000313|EMBL:JAB25489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033774}  [Source:UniProtKB/TrEMBL;Acc:F6SS06]
ENSCJAG00000007588	KNOWN	protein_coding	KLHL29	chromosome:C_jacchus3.2.1:14:1:108792865:1	84851068	85173811	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014118}  [Source:UniProtKB/TrEMBL;Acc:F7IIZ9]
ENSCJAG00000007621	NOVEL	pseudogene	ENSCJAG00000007621	chromosome:C_jacchus3.2.1:14:1:108792865:1	84924595	84925014	R	<no descrition>
ENSCJAG00000033463	NOVEL	protein_coding	ENSCJAG00000033463	chromosome:C_jacchus3.2.1:14:1:108792865:1	85039596	85057164	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049886}  [Source:UniProtKB/TrEMBL;Acc:F6YCX4]
ENSCJAG00000007584	NOVEL	pseudogene	ENSCJAG00000007584	chromosome:C_jacchus3.2.1:14:1:108792865:1	87209374	87210130	D	<no descrition>
ENSCJAG00000007582	KNOWN_BY_PROJECTION	protein_coding	TDRD15	chromosome:C_jacchus3.2.1:14:1:108792865:1	87428919	87449788	R	tudor domain containing 15 [Source:HGNC Symbol;Acc:HGNC:45037]
ENSCJAG00000003979	NOVEL	protein_coding	ENSCJAG00000003979	chromosome:C_jacchus3.2.1:X:1:142054208:1	11734760	11754977	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007252}  [Source:UniProtKB/TrEMBL;Acc:F6U2Q8]
ENSCJAG00000019125	KNOWN_BY_PROJECTION	protein_coding	C1QTNF2	chromosome:C_jacchus3.2.1:2:1:204313951:1	21481294	21490831	R	C1q and tumor necrosis factor related protein 2 [Source:HGNC Symbol;Acc:HGNC:14325]
ENSCJAG00000022257	KNOWN	protein_coding	ZBED8	chromosome:C_jacchus3.2.1:2:1:204313951:1	21522912	21529539	R	Transposon-derived Buster3 transposase-like protein {ECO:0000313|EMBL:JAB10519.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040904}  [Source:UniProtKB/TrEMBL;Acc:F7I254]
ENSCJAG00000001797	KNOWN_BY_PROJECTION	protein_coding	ATR	chromosome:C_jacchus3.2.1:17:1:74750902:1	34128729	34255427	D	ATR serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:882]
ENSCJAG00000009557	KNOWN_BY_PROJECTION	protein_coding	C12orf76	chromosome:C_jacchus3.2.1:9:1:124281992:1	100187549	100205077	R	chromosome 12 open reading frame 76 [Source:HGNC Symbol;Acc:HGNC:33790]
ENSCJAG00000019132	KNOWN	protein_coding	SLU7	chromosome:C_jacchus3.2.1:2:1:204313951:1	21532587	21548676	R	Pre-mRNA-splicing factor SLU7 {ECO:0000313|EMBL:JAB13851.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035564}  [Source:UniProtKB/TrEMBL;Acc:F7EGQ1]
ENSCJAG00000009518	KNOWN	protein_coding	IFT81	chromosome:C_jacchus3.2.1:9:1:124281992:1	100277834	100381938	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017487}  [Source:UniProtKB/TrEMBL;Acc:F7IRK8]
ENSCJAG00000013218	NOVEL	protein_coding	ENSCJAG00000013218	chromosome:C_jacchus3.2.1:3:1:190850796:1	165853125	165967007	R	<no descrition>
ENSCJAG00000032439	NOVEL	protein_coding	ENSCJAG00000032439	chromosome:C_jacchus3.2.1:11:1:130397257:1	122239676	122258386	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002594}  [Source:UniProtKB/TrEMBL;Acc:F7IDY6]
ENSCJAG00000007533	KNOWN_BY_PROJECTION	protein_coding	APOB	chromosome:C_jacchus3.2.1:14:1:108792865:1	87528676	87652796	D	apolipoprotein B [Source:HGNC Symbol;Acc:HGNC:603]
ENSCJAG00000019165	KNOWN	protein_coding	ENSCJAG00000019165	chromosome:C_jacchus3.2.1:2:1:204313951:1	21552158	21559200	D	Securin {ECO:0000313|EMBL:JAB13342.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035591}  [Source:UniProtKB/TrEMBL;Acc:F7E3V6]
ENSCJAG00000001369	KNOWN_BY_PROJECTION	protein_coding	ZDHHC24	chromosome:C_jacchus3.2.1:11:1:130397257:1	122266690	122278323	R	zinc finger, DHHC-type containing 24 [Source:HGNC Symbol;Acc:HGNC:27387]
ENSCJAG00000009429	KNOWN_BY_PROJECTION	protein_coding	ATP2A2	chromosome:C_jacchus3.2.1:9:1:124281992:1	100441897	100518796	D	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 [Source:HGNC Symbol;Acc:HGNC:812]
ENSCJAG00000015122	KNOWN_BY_PROJECTION	protein_coding	ATP10B	chromosome:C_jacchus3.2.1:2:1:204313951:1	21711759	21844341	R	ATPase, class V, type 10B [Source:HGNC Symbol;Acc:HGNC:13543]
ENSCJAG00000001334	KNOWN_BY_PROJECTION	protein_coding	ACTN3	chromosome:C_jacchus3.2.1:11:1:130397257:1	122279384	122294022	D	actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
ENSCJAG00000009382	KNOWN	protein_coding	ZNF219	chromosome:C_jacchus3.2.1:10:1:132174527:1	45253850	45270449	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045313}; Zinc finger protein 219 {ECO:0000313|EMBL:JAB09746.1}  [Source:UniProtKB/TrEMBL;Acc:F6TTB3]
ENSCJAG00000001208	KNOWN	protein_coding	PPM1D	chromosome:C_jacchus3.2.1:5:1:159171411:1	86345593	86399162	R	Protein phosphatase 1D {ECO:0000313|EMBL:JAB08181.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002144}  [Source:UniProtKB/TrEMBL;Acc:F7IIZ4]
ENSCJAG00000034823	NOVEL	protein_coding	ENSCJAG00000034823	chromosome:C_jacchus3.2.1:4:1:171630274:1	54115713	54128244	R	Glutathione S-transferase {ECO:0000256|RuleBase:RU004454}  [Source:UniProtKB/TrEMBL;Acc:F7HBV1]
ENSCJAG00000006486	KNOWN_BY_PROJECTION	protein_coding	LRRC53	chromosome:C_jacchus3.2.1:7:1:155834243:1	110274785	110288435	R	leucine rich repeat containing 53 [Source:HGNC Symbol;Acc:HGNC:25255]
ENSCJAG00000006491	KNOWN_BY_PROJECTION	protein_coding	ERICH3	chromosome:C_jacchus3.2.1:7:1:155834243:1	110376312	110484449	R	glutamate-rich 3 [Source:HGNC Symbol;Acc:HGNC:25346]
ENSCJAG00000004014	NOVEL	pseudogene	ENSCJAG00000004014	chromosome:C_jacchus3.2.1:X:1:142054208:1	11746599	11747359	D	<no descrition>
ENSCJAG00000035427	NOVEL	protein_coding	ENSCJAG00000035427	chromosome:C_jacchus3.2.1:X:1:142054208:1	11761630	11771262	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007272}  [Source:UniProtKB/TrEMBL;Acc:F6TGA2]
ENSCJAG00000011268	KNOWN	protein_coding	GSTA4	chromosome:C_jacchus3.2.1:4:1:171630274:1	54152515	54170528	R	Glutathione S-transferase {ECO:0000256|RuleBase:RU004454}  [Source:UniProtKB/TrEMBL;Acc:F7GQS8]
ENSCJAG00000001185	KNOWN	protein_coding	APPBP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	86484056	86556397	D	Amyloid protein-binding protein 2 {ECO:0000313|EMBL:JAB04540.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002074}  [Source:UniProtKB/TrEMBL;Acc:F7HXY0]
ENSCJAG00000008470	KNOWN_BY_PROJECTION	protein_coding	FAM78A	chromosome:C_jacchus3.2.1:1:1:210400635:1	175370237	175387776	R	family with sequence similarity 78, member A [Source:HGNC Symbol;Acc:HGNC:25465]
ENSCJAG00000008460	KNOWN_BY_PROJECTION	protein_coding	PPAPDC3	chromosome:C_jacchus3.2.1:1:1:210400635:1	175401427	175404958	D	phosphatidic acid phosphatase type 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28174]
ENSCJAG00000015148	KNOWN	protein_coding	GABRB2	chromosome:C_jacchus3.2.1:2:1:204313951:1	22485850	22747178	R	Gamma-aminobutyric acid receptor subunit beta-2 isoform 1 {ECO:0000313|EMBL:JAB33256.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027948}  [Source:UniProtKB/TrEMBL;Acc:F7DAV1]
ENSCJAG00000001176	KNOWN_BY_PROJECTION	protein_coding	C17orf64	chromosome:C_jacchus3.2.1:5:1:159171411:1	86570972	86582794	R	chromosome 17 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:26990]
ENSCJAG00000013178	KNOWN	protein_coding	SEPSECS	chromosome:C_jacchus3.2.1:3:1:190850796:1	165967076	166006686	D	O-phosphoseryl-tRNA(Sec) selenium transferase {ECO:0000313|EMBL:JAB23168.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047696}  [Source:UniProtKB/TrEMBL;Acc:F7GM93]
ENSCJAG00000009370	KNOWN_BY_PROJECTION	protein_coding	OR5AU1	chromosome:C_jacchus3.2.1:10:1:132174527:1	45322320	45323255	R	olfactory receptor, family 5, subfamily AU, member 1 [Source:HGNC Symbol;Acc:HGNC:15362]
ENSCJAG00000007531	KNOWN_BY_PROJECTION	protein_coding	C2orf43	chromosome:C_jacchus3.2.1:14:1:108792865:1	87754947	87815342	D	chromosome 2 open reading frame 43 [Source:HGNC Symbol;Acc:HGNC:26145]
ENSCJAG00000008416	KNOWN_BY_PROJECTION	protein_coding	PRRC2B	chromosome:C_jacchus3.2.1:1:1:210400635:1	175514487	175598413	D	proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
ENSCJAG00000004016	KNOWN	protein_coding	GPM6B	chromosome:C_jacchus3.2.1:X:1:142054208:1	11774802	11936711	R	Neuronal membrane glycoprotein M6-b isoform 2 {ECO:0000313|EMBL:JAB23030.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007344}  [Source:UniProtKB/TrEMBL;Acc:F6RKY6]
ENSCJAG00000006521	NOVEL	protein_coding	ENSCJAG00000006521	chromosome:C_jacchus3.2.1:7:1:155834243:1	110515280	110542454	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044528}  [Source:UniProtKB/TrEMBL;Acc:F7GJR2]
ENSCJAG00000001104	KNOWN	protein_coding	USP32	chromosome:C_jacchus3.2.1:5:1:159171411:1	86610302	86847309	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F6YBS2]
ENSCJAG00000034854	NOVEL	protein_coding	ENSCJAG00000034854	chromosome:C_jacchus3.2.1:11:1:130397257:1	122290990	122291473	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048070}  [Source:UniProtKB/TrEMBL;Acc:F7FBA3]
ENSCJAG00000009298	KNOWN_BY_PROJECTION	protein_coding	RPGRIP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	45429593	45512653	D	retinitis pigmentosa GTPase regulator interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13436]
ENSCJAG00000018253	NOVEL	protein_coding	ENSCJAG00000018253	chromosome:C_jacchus3.2.1:12:1:121768101:1	90804296	90812955	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033781}  [Source:UniProtKB/TrEMBL;Acc:F6SH33]
ENSCJAG00000015176	KNOWN_BY_PROJECTION	protein_coding	GABRA6	chromosome:C_jacchus3.2.1:2:1:204313951:1	22882299	22899364	D	gamma-aminobutyric acid (GABA) A receptor, alpha 6 [Source:HGNC Symbol;Acc:HGNC:4080]
ENSCJAG00000001318	KNOWN_BY_PROJECTION	protein_coding	CTSF	chromosome:C_jacchus3.2.1:11:1:130397257:1	122294161	122299175	R	cathepsin F [Source:HGNC Symbol;Acc:HGNC:2531]
ENSCJAG00000006550	KNOWN	protein_coding	TYW3	chromosome:C_jacchus3.2.1:7:1:155834243:1	110542291	110565407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012107}; tRNA wybutosine-synthesizing protein 3 homolog isoform 1 {ECO:0000313|EMBL:JAB01891.1}  [Source:UniProtKB/TrEMBL;Acc:F7EJI6]
ENSCJAG00000018257	KNOWN_BY_PROJECTION	protein_coding	PDCD11	chromosome:C_jacchus3.2.1:12:1:121768101:1	90814790	90872045	D	programmed cell death 11 [Source:HGNC Symbol;Acc:HGNC:13408]
ENSCJAG00000001313	KNOWN_BY_PROJECTION	protein_coding	CCDC87	chromosome:C_jacchus3.2.1:11:1:130397257:1	122318685	122321374	R	coiled-coil domain containing 87 [Source:HGNC Symbol;Acc:HGNC:25579]
ENSCJAG00000006569	KNOWN_BY_PROJECTION	protein_coding	LHX8	chromosome:C_jacchus3.2.1:7:1:155834243:1	110945775	110983638	D	LIM homeobox 8 [Source:HGNC Symbol;Acc:HGNC:28838]
ENSCJAG00000001305	KNOWN	protein_coding	CCS	chromosome:C_jacchus3.2.1:11:1:130397257:1	122321563	122337059	D	Callithrix jacchus copper chaperone for superoxide dismutase (CCS), mRNA. [Source:RefSeq mRNA;Acc:NM_001185042]
ENSCJAG00000007529	KNOWN_BY_PROJECTION	protein_coding	GDF7	chromosome:C_jacchus3.2.1:14:1:108792865:1	87877759	87882041	R	growth differentiation factor 7 [Source:HGNC Symbol;Acc:HGNC:4222]
ENSCJAG00000007517	KNOWN_BY_PROJECTION	protein_coding	HS1BP3	chromosome:C_jacchus3.2.1:14:1:108792865:1	87898716	87936067	D	HCLS1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24979]
ENSCJAG00000008387	KNOWN	protein_coding	POMT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	175591946	175613669	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015474}  [Source:UniProtKB/TrEMBL;Acc:F7GGV4]
ENSCJAG00000034068	NOVEL	protein_coding	ENSCJAG00000034068	chromosome:C_jacchus3.2.1:14:1:108792865:1	87964629	87968665	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051739}  [Source:UniProtKB/TrEMBL;Acc:F7CDR3]
ENSCJAG00000006591	KNOWN_BY_PROJECTION	protein_coding	SLC44A5	chromosome:C_jacchus3.2.1:7:1:155834243:1	111026879	111127464	R	solute carrier family 44, member 5 [Source:HGNC Symbol;Acc:HGNC:28524]
ENSCJAG00000031454	NOVEL	protein_coding	ENSCJAG00000031454	chromosome:C_jacchus3.2.1:14:1:108792865:1	88062306	88063337	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050283}  [Source:UniProtKB/TrEMBL;Acc:F7EYY5]
ENSCJAG00000034056	NOVEL	pseudogene	ENSCJAG00000034056	chromosome:C_jacchus3.2.1:14:1:108792865:1	88119211	88120528	R	<no descrition>
ENSCJAG00000001872	KNOWN	protein_coding	XRN1	chromosome:C_jacchus3.2.1:17:1:74750902:1	34257079	34373952	D	5'-3' exoribonuclease 1 {ECO:0000256|PIRNR:PIRNR006743}  [Source:UniProtKB/TrEMBL;Acc:F7GZR1]
ENSCJAG00000004054	KNOWN	protein_coding	GEMIN8	chromosome:C_jacchus3.2.1:X:1:142054208:1	12010771	12031699	R	Gem-associated protein 8 {ECO:0000313|EMBL:JAB13916.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007357}  [Source:UniProtKB/TrEMBL;Acc:F6RJU5]
ENSCJAG00000015200	KNOWN	protein_coding	GABRA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	23052130	23110770	D	Gamma-aminobutyric acid receptor subunit alpha-1 {ECO:0000313|EMBL:JAB22264.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011728}  [Source:UniProtKB/TrEMBL;Acc:F7GM19]
ENSCJAG00000001294	KNOWN	protein_coding	RBM14	chromosome:C_jacchus3.2.1:11:1:130397257:1	122352988	122408890	D	RNA-binding protein 4 isoform 1 {ECO:0000313|EMBL:JAB06268.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002268}  [Source:UniProtKB/TrEMBL;Acc:F7HQP3]
ENSCJAG00000004058	KNOWN	protein_coding	GLRA2	chromosome:C_jacchus3.2.1:X:1:142054208:1	12569382	12794675	D	Glycine receptor subunit alpha-2 isoform B {ECO:0000313|EMBL:JAB27239.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007387}  [Source:UniProtKB/TrEMBL;Acc:F6QPJ1]
ENSCJAG00000033349	NOVEL	pseudogene	ENSCJAG00000033349	chromosome:C_jacchus3.2.1:3:1:190850796:1	166071128	166071738	D	<no descrition>
ENSCJAG00000013142	KNOWN_BY_PROJECTION	protein_coding	LGI2	chromosome:C_jacchus3.2.1:3:1:190850796:1	166112220	166144918	D	leucine-rich repeat LGI family, member 2 [Source:HGNC Symbol;Acc:HGNC:18710]
ENSCJAG00000001165	NOVEL	protein_coding	ENSCJAG00000001165	chromosome:C_jacchus3.2.1:5:1:159171411:1	86676266	86677098	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002013}  [Source:UniProtKB/TrEMBL;Acc:F7I513]
ENSCJAG00000015272	KNOWN	protein_coding	GABRG2	chromosome:C_jacchus3.2.1:2:1:204313951:1	23273202	23366191	D	Gamma-aminobutyric acid receptor subunit gamma-2 isoform 2 {ECO:0000313|EMBL:JAB19364.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028222}  [Source:UniProtKB/TrEMBL;Acc:F6XG46]
ENSCJAG00000001162	NOVEL	protein_coding	ENSCJAG00000001162	chromosome:C_jacchus3.2.1:5:1:159171411:1	86807519	86808848	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001994}  [Source:UniProtKB/TrEMBL;Acc:F6VW64]
ENSCJAG00000001097	NOVEL	protein_coding	ENSCJAG00000001097	chromosome:C_jacchus3.2.1:5:1:159171411:1	86864889	86874739	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001890}  [Source:UniProtKB/TrEMBL;Acc:F7ADG4]
ENSCJAG00000008370	KNOWN	protein_coding	UCK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	175615336	175620950	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015428}  [Source:UniProtKB/TrEMBL;Acc:F7GZN7]
ENSCJAG00000001093	KNOWN_BY_PROJECTION	protein_coding	ZNHIT3	chromosome:C_jacchus3.2.1:5:1:159171411:1	86937481	86944525	D	zinc finger, HIT-type containing 3 [Source:HGNC Symbol;Acc:HGNC:12309]
ENSCJAG00000004079	KNOWN_BY_PROJECTION	protein_coding	FANCB	chromosome:C_jacchus3.2.1:X:1:142054208:1	12926610	12961761	R	Fanconi anemia, complementation group B [Source:HGNC Symbol;Acc:HGNC:3583]
ENSCJAG00000032221	NOVEL	pseudogene	ENSCJAG00000032221	chromosome:C_jacchus3.2.1:7:1:155834243:1	111398264	111398735	D	<no descrition>
ENSCJAG00000001068	KNOWN_BY_PROJECTION	protein_coding	MYO19	chromosome:C_jacchus3.2.1:5:1:159171411:1	86944902	86988620	R	myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
ENSCJAG00000009515	NOVEL	pseudogene	ENSCJAG00000009515	chromosome:C_jacchus3.2.1:9:1:124281992:1	100504416	100505217	R	<no descrition>
ENSCJAG00000007450	KNOWN	protein_coding	PUM2	chromosome:C_jacchus3.2.1:14:1:108792865:1	88220729	88327738	D	Pumilio homolog 2 {ECO:0000313|EMBL:JAB09392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013953}  [Source:UniProtKB/TrEMBL;Acc:F6WG13]
ENSCJAG00000009364	KNOWN_BY_PROJECTION	protein_coding	ANAPC7	chromosome:C_jacchus3.2.1:9:1:124281992:1	100536718	100559765	R	anaphase promoting complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:17380]
ENSCJAG00000008301	KNOWN_BY_PROJECTION	protein_coding	RAPGEF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	175657206	175805750	R	Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
ENSCJAG00000006692	KNOWN_BY_PROJECTION	protein_coding	ACADM	chromosome:C_jacchus3.2.1:7:1:155834243:1	111462627	111590608	D	acyl-CoA dehydrogenase, C-4 to C-12 straight chain [Source:HGNC Symbol;Acc:HGNC:89]
ENSCJAG00000001044	KNOWN_BY_PROJECTION	protein_coding	GGNBP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	86999333	87045156	D	gametogenetin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:19357]
ENSCJAG00000004091	KNOWN	protein_coding	MOSPD2	chromosome:C_jacchus3.2.1:X:1:142054208:1	12962135	13005802	D	Motile sperm domain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB10729.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007492}  [Source:UniProtKB/TrEMBL;Acc:F6STC2]
ENSCJAG00000036876	NOVEL	protein_coding	ENSCJAG00000036876	chromosome:C_jacchus3.2.1:11:1:130397257:1	122365178	122367274	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052191}  [Source:UniProtKB/TrEMBL;Acc:F7HVR1]
ENSCJAG00000001263	KNOWN_BY_PROJECTION	protein_coding	RBM4B	chromosome:C_jacchus3.2.1:11:1:130397257:1	122412126	122422393	R	RNA binding motif protein 4B [Source:HGNC Symbol;Acc:HGNC:28842]
ENSCJAG00000001228	KNOWN	protein_coding	SPTBN2	chromosome:C_jacchus3.2.1:11:1:130397257:1	122429860	122466582	R	Spectrin beta chain, non-erythrocytic 2 {ECO:0000313|EMBL:JAB11166.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002218}  [Source:UniProtKB/TrEMBL;Acc:F7HXR3]
ENSCJAG00000013127	KNOWN_BY_PROJECTION	protein_coding	CCDC149	chromosome:C_jacchus3.2.1:3:1:190850796:1	166165749	166335643	D	coiled-coil domain containing 149 [Source:HGNC Symbol;Acc:HGNC:25405]
ENSCJAG00000011214	KNOWN	protein_coding	ICK	chromosome:C_jacchus3.2.1:4:1:171630274:1	54179892	54243571	R	Serine/threonine-protein kinase ICK {ECO:0000313|EMBL:JAB05942.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020733}  [Source:UniProtKB/TrEMBL;Acc:F7H188]
ENSCJAG00000001924	KNOWN	protein_coding	GK5	chromosome:C_jacchus3.2.1:17:1:74750902:1	34437183	34502774	D	Putative glycerol kinase 5 {ECO:0000313|EMBL:JAB03366.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003509}  [Source:UniProtKB/TrEMBL;Acc:F7F132]
ENSCJAG00000015341	KNOWN	protein_coding	CCNG1	chromosome:C_jacchus3.2.1:2:1:204313951:1	24592987	24600148	D	Cyclin-G1 {ECO:0000313|EMBL:JAB06438.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045832}  [Source:UniProtKB/TrEMBL;Acc:F6QMN8]
ENSCJAG00000004125	KNOWN	protein_coding	ASB9	chromosome:C_jacchus3.2.1:X:1:142054208:1	13360982	13389387	R	Ankyrin repeat and SOCS box protein 9 isoform 1 {ECO:0000313|EMBL:JAB12425.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007516}  [Source:UniProtKB/TrEMBL;Acc:F6S5G6]
ENSCJAG00000001950	KNOWN	protein_coding	TFDP2	chromosome:C_jacchus3.2.1:17:1:74750902:1	34516580	34698838	D	Transcription factor Dp-2 isoform 4 {ECO:0000313|EMBL:JAB39887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045811}  [Source:UniProtKB/TrEMBL;Acc:F6R6W6]
ENSCJAG00000018290	KNOWN	protein_coding	CALHM2	chromosome:C_jacchus3.2.1:12:1:121768101:1	90872534	90878712	R	Calcium homeostasis modulator protein 2 {ECO:0000313|EMBL:JAB06593.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033856}  [Source:UniProtKB/TrEMBL;Acc:F6QN32]
ENSCJAG00000015367	KNOWN	protein_coding	NUDCD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	24608467	24614725	R	NudC domain-containing protein 2 {ECO:0000313|EMBL:JAB01901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028295}  [Source:UniProtKB/TrEMBL;Acc:F6UHX7]
ENSCJAG00000018305	KNOWN	protein_coding	MED27	chromosome:C_jacchus3.2.1:1:1:210400635:1	175947570	176165194	R	Mediator of RNA polymerase II transcription subunit 27 isoform 1 {ECO:0000313|EMBL:JAB08270.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048848}  [Source:UniProtKB/TrEMBL;Acc:F6SYI8]
ENSCJAG00000004142	KNOWN	protein_coding	ASB11	chromosome:C_jacchus3.2.1:X:1:142054208:1	13405685	13440217	R	Ankyrin repeat and SOCS box protein 11 isoform b {ECO:0000313|EMBL:JAB39877.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007556}  [Source:UniProtKB/TrEMBL;Acc:F6RIQ7]
ENSCJAG00000009196	KNOWN	protein_coding	SUPT16H	chromosome:C_jacchus3.2.1:10:1:132174527:1	45512829	45549430	R	FACT complex subunit SPT16 {ECO:0000313|EMBL:JAB04149.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017024}  [Source:UniProtKB/TrEMBL;Acc:F7HYP4]
ENSCJAG00000001987	KNOWN	protein_coding	GRK7	chromosome:C_jacchus3.2.1:17:1:74750902:1	34559436	34864406	R	G protein-coupled receptor kinase 7 {ECO:0000313|EMBL:JAB47440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003586}  [Source:UniProtKB/TrEMBL;Acc:F7DUK2]
ENSCJAG00000015371	KNOWN_BY_PROJECTION	protein_coding	HMMR	chromosome:C_jacchus3.2.1:2:1:204313951:1	24615114	24647829	D	hyaluronan-mediated motility receptor (RHAMM) [Source:HGNC Symbol;Acc:HGNC:5012]
ENSCJAG00000001031	KNOWN	protein_coding	DHRS11	chromosome:C_jacchus3.2.1:5:1:159171411:1	87047415	87056396	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001777}  [Source:UniProtKB/TrEMBL;Acc:F6X373]
ENSCJAG00000009360	KNOWN	protein_coding	ENSCJAG00000009360	chromosome:C_jacchus3.2.1:9:1:124281992:1	100579109	100597282	R	Actin-related protein 2/3 complex subunit 3 {ECO:0000256|PIRNR:PIRNR016315}  [Source:UniProtKB/TrEMBL;Acc:F7H8T3]
ENSCJAG00000018288	KNOWN_BY_PROJECTION	protein_coding	NTNG2	chromosome:C_jacchus3.2.1:1:1:210400635:1	176247025	176328057	D	netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
ENSCJAG00000001981	NOVEL	protein_coding	ENSCJAG00000001981	chromosome:C_jacchus3.2.1:17:1:74750902:1	34718860	34743799	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003577}  [Source:UniProtKB/TrEMBL;Acc:F7E8Z2]
ENSCJAG00000018294	KNOWN_BY_PROJECTION	protein_coding	CALHM1	chromosome:C_jacchus3.2.1:12:1:121768101:1	90881538	90885308	R	calcium homeostasis modulator 1 [Source:HGNC Symbol;Acc:HGNC:23494]
ENSCJAG00000018295	KNOWN_BY_PROJECTION	protein_coding	CALHM3	chromosome:C_jacchus3.2.1:12:1:121768101:1	90899882	90907922	R	calcium homeostasis modulator 3 [Source:HGNC Symbol;Acc:HGNC:23458]
ENSCJAG00000001991	KNOWN	protein_coding	RNF7	chromosome:C_jacchus3.2.1:17:1:74750902:1	34884019	34892090	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003587}  [Source:UniProtKB/TrEMBL;Acc:F7DUI7]
ENSCJAG00000018297	KNOWN	protein_coding	NEURL	chromosome:C_jacchus3.2.1:12:1:121768101:1	91002990	91024566	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033873}  [Source:UniProtKB/TrEMBL;Acc:F6QBU9]
ENSCJAG00000009339	KNOWN	protein_coding	GPN3	chromosome:C_jacchus3.2.1:9:1:124281992:1	100599673	100619102	R	GPN-loop GTPase 3 isoform 1 {ECO:0000313|EMBL:JAB02110.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017126}  [Source:UniProtKB/TrEMBL;Acc:F7IHF8]
ENSCJAG00000001023	KNOWN_BY_PROJECTION	protein_coding	MRM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	87057242	87064756	D	mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26202]
ENSCJAG00000001212	KNOWN_BY_PROJECTION	protein_coding	C11orf80	chromosome:C_jacchus3.2.1:11:1:130397257:1	122450452	122605870	D	chromosome 11 open reading frame 80 [Source:HGNC Symbol;Acc:HGNC:26197]
ENSCJAG00000007439	KNOWN	protein_coding	SDC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	88348943	88376129	D	Syndecan {ECO:0000256|RuleBase:RU000649}  [Source:UniProtKB/TrEMBL;Acc:F7BVT9]
ENSCJAG00000007435	NOVEL	protein_coding	ENSCJAG00000007435	chromosome:C_jacchus3.2.1:14:1:108792865:1	88421037	88421426	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013824}  [Source:UniProtKB/TrEMBL;Acc:F7BWF0]
ENSCJAG00000015458	KNOWN	protein_coding	LHX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	87367877	87373937	D	LIM/homeobox protein Lhx1 {ECO:0000313|EMBL:JAB45574.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028486}  [Source:UniProtKB/TrEMBL;Acc:F6UGX4]
ENSCJAG00000007433	KNOWN	protein_coding	LAPTM4A	chromosome:C_jacchus3.2.1:14:1:108792865:1	88542319	88561517	D	Lysosomal-associated transmembrane protein 4A {ECO:0000313|EMBL:JAB10408.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013819}  [Source:UniProtKB/TrEMBL;Acc:F7BWM7]
ENSCJAG00000018307	KNOWN_BY_PROJECTION	protein_coding	SH3PXD2A	chromosome:C_jacchus3.2.1:12:1:121768101:1	91034337	91248755	R	SH3 and PX domains 2A [Source:HGNC Symbol;Acc:HGNC:23664]
ENSCJAG00000006746	KNOWN	protein_coding	RABGGTB	chromosome:C_jacchus3.2.1:7:1:155834243:1	111500253	111509680	D	Geranylgeranyl transferase type-2 subunit beta {ECO:0000313|EMBL:JAB02328.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012506}  [Source:UniProtKB/TrEMBL;Acc:F7H843]
ENSCJAG00000007406	KNOWN_BY_PROJECTION	protein_coding	MATN3	chromosome:C_jacchus3.2.1:14:1:108792865:1	88589418	88617194	D	matrilin 3 [Source:HGNC Symbol;Acc:HGNC:6909]
ENSCJAG00000013118	NOVEL	pseudogene	ENSCJAG00000013118	chromosome:C_jacchus3.2.1:3:1:190850796:1	166361533	166362413	D	<no descrition>
ENSCJAG00000011208	NOVEL	pseudogene	ENSCJAG00000011208	chromosome:C_jacchus3.2.1:4:1:171630274:1	54259464	54260995	D	<no descrition>
ENSCJAG00000034041	NOVEL	pseudogene	ENSCJAG00000034041	chromosome:C_jacchus3.2.1:3:1:190850796:1	166499820	166500131	D	<no descrition>
ENSCJAG00000011189	KNOWN_BY_PROJECTION	protein_coding	GCM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	54330966	54353065	R	glial cells missing homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:4197]
ENSCJAG00000020439	NOVEL	pseudogene	ENSCJAG00000020439	chromosome:C_jacchus3.2.1:4:1:171630274:1	54440427	54440860	R	<no descrition>
ENSCJAG00000001994	KNOWN	protein_coding	RASA2	chromosome:C_jacchus3.2.1:17:1:74750902:1	34981132	35110424	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003726}  [Source:UniProtKB/TrEMBL;Acc:F7EZR2]
ENSCJAG00000006791	KNOWN_BY_PROJECTION	protein_coding	MSH4	chromosome:C_jacchus3.2.1:7:1:155834243:1	111510877	111614857	D	mutS homolog 4 [Source:HGNC Symbol;Acc:HGNC:7327]
ENSCJAG00000011119	KNOWN	protein_coding	ELOVL5	chromosome:C_jacchus3.2.1:4:1:171630274:1	54468381	54552717	R	Elongation of very long chain fatty acids protein {ECO:0000256|RuleBase:RU361115}  [Source:UniProtKB/TrEMBL;Acc:F7G9M6]
ENSCJAG00000018245	KNOWN_BY_PROJECTION	protein_coding	SETX	chromosome:C_jacchus3.2.1:1:1:210400635:1	176349736	176438376	R	senataxin [Source:HGNC Symbol;Acc:HGNC:445]
ENSCJAG00000013069	KNOWN	protein_coding	DHX15	chromosome:C_jacchus3.2.1:3:1:190850796:1	166582365	166638008	D	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 {ECO:0000313|EMBL:JAB08619.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024080}  [Source:UniProtKB/TrEMBL;Acc:F7G302]
ENSCJAG00000006817	KNOWN_BY_PROJECTION	protein_coding	ASB17	chromosome:C_jacchus3.2.1:7:1:155834243:1	111620533	111633220	R	ankyrin repeat and SOCS box containing 17 [Source:HGNC Symbol;Acc:HGNC:19769]
ENSCJAG00000006823	KNOWN_BY_PROJECTION	protein_coding	ST6GALNAC3	chromosome:C_jacchus3.2.1:7:1:155834243:1	111816937	112407565	D	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
ENSCJAG00000004172	KNOWN	protein_coding	PIGA	chromosome:C_jacchus3.2.1:X:1:142054208:1	13445829	13462178	R	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform 1 {ECO:0000313|EMBL:JAB19589.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007600}  [Source:UniProtKB/TrEMBL;Acc:F6PQV9]
ENSCJAG00000007386	KNOWN_BY_PROJECTION	protein_coding	WDR35	chromosome:C_jacchus3.2.1:14:1:108792865:1	88619239	88685109	D	WD repeat domain 35 [Source:HGNC Symbol;Acc:HGNC:29250]
ENSCJAG00000015401	KNOWN	protein_coding	MAT2B	chromosome:C_jacchus3.2.1:2:1:204313951:1	24661860	24677519	D	Methionine adenosyltransferase 2 subunit beta isoform 2 {ECO:0000313|EMBL:JAB07997.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028436}  [Source:UniProtKB/TrEMBL;Acc:F6WSE0]
ENSCJAG00000009328	KNOWN_BY_PROJECTION	protein_coding	FAM216A	chromosome:C_jacchus3.2.1:9:1:124281992:1	100619303	100637764	D	family with sequence similarity 216, member A [Source:HGNC Symbol;Acc:HGNC:30180]
ENSCJAG00000015449	KNOWN_BY_PROJECTION	protein_coding	AATF	chromosome:C_jacchus3.2.1:5:1:159171411:1	87379535	87489216	D	apoptosis antagonizing transcription factor [Source:HGNC Symbol;Acc:HGNC:19235]
ENSCJAG00000001224	NOVEL	pseudogene	ENSCJAG00000001224	chromosome:C_jacchus3.2.1:11:1:130397257:1	122525527	122526319	D	<no descrition>
ENSCJAG00000004194	KNOWN_BY_PROJECTION	protein_coding	FIGF	chromosome:C_jacchus3.2.1:X:1:142054208:1	13472516	13523142	R	c-fos induced growth factor (vascular endothelial growth factor D) [Source:HGNC Symbol;Acc:HGNC:3708]
ENSCJAG00000001196	KNOWN_BY_PROJECTION	protein_coding	RCE1	chromosome:C_jacchus3.2.1:11:1:130397257:1	122605951	122609066	D	Ras converting CAAX endopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:13721]
ENSCJAG00000006833	KNOWN	protein_coding	ST6GALNAC5	chromosome:C_jacchus3.2.1:7:1:155834243:1	112637969	112815763	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012642}  [Source:UniProtKB/TrEMBL;Acc:F6PZV5]
ENSCJAG00000018342	KNOWN	protein_coding	OBFC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	91333126	91382541	R	CST complex subunit STN1 {ECO:0000313|EMBL:JAB42738.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033992}  [Source:UniProtKB/TrEMBL;Acc:F6SF17]
ENSCJAG00000006837	KNOWN	protein_coding	PIGK	chromosome:C_jacchus3.2.1:7:1:155834243:1	112841385	112968832	R	GPI-anchor transamidase {ECO:0000313|EMBL:JAB05879.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012679}  [Source:UniProtKB/TrEMBL;Acc:F6U8I0]
ENSCJAG00000009321	KNOWN_BY_PROJECTION	protein_coding	VPS29	chromosome:C_jacchus3.2.1:9:1:124281992:1	100638817	100649322	R	vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:14340]
ENSCJAG00000001143	KNOWN	protein_coding	PC	chromosome:C_jacchus3.2.1:11:1:130397257:1	122611068	122725068	R	Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}  [Source:UniProtKB/TrEMBL;Acc:F6Z378]
ENSCJAG00000009002	KNOWN_BY_PROJECTION	protein_coding	CHD8	chromosome:C_jacchus3.2.1:10:1:132174527:1	45550628	45604674	R	chromodomain helicase DNA binding protein 8 [Source:HGNC Symbol;Acc:HGNC:20153]
ENSCJAG00000001191	KNOWN_BY_PROJECTION	protein_coding	LRFN4	chromosome:C_jacchus3.2.1:11:1:130397257:1	122619897	122622041	D	leucine rich repeat and fibronectin type III domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28456]
ENSCJAG00000006856	KNOWN	protein_coding	AK5	chromosome:C_jacchus3.2.1:7:1:155834243:1	113030068	113340716	D	Adenylate kinase isoenzyme 5 isoform 1 {ECO:0000313|EMBL:JAB15371.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012764}  [Source:UniProtKB/TrEMBL;Acc:F6RG37]
ENSCJAG00000001141	KNOWN_BY_PROJECTION	protein_coding	C11orf86	chromosome:C_jacchus3.2.1:11:1:130397257:1	122744384	122746031	D	chromosome 11 open reading frame 86 [Source:HGNC Symbol;Acc:HGNC:34442]
ENSCJAG00000015442	NOVEL	pseudogene	ENSCJAG00000015442	chromosome:C_jacchus3.2.1:2:1:204313951:1	24871685	24872515	R	<no descrition>
ENSCJAG00000001134	KNOWN_BY_PROJECTION	protein_coding	SYT12	chromosome:C_jacchus3.2.1:11:1:130397257:1	122789628	122818692	D	synaptotagmin XII [Source:HGNC Symbol;Acc:HGNC:18381]
ENSCJAG00000001124	KNOWN	protein_coding	RHOD	chromosome:C_jacchus3.2.1:11:1:130397257:1	122828283	122842658	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001940}  [Source:UniProtKB/TrEMBL;Acc:F6XQ60]
ENSCJAG00000006894	KNOWN	protein_coding	ZZZ3	chromosome:C_jacchus3.2.1:7:1:155834243:1	113347106	113472562	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012827}; ZZ-type zinc finger-containing protein 3 {ECO:0000313|EMBL:JAB04765.1}  [Source:UniProtKB/TrEMBL;Acc:F6PNH1]
ENSCJAG00000013024	KNOWN	protein_coding	PPARGC1A	chromosome:C_jacchus3.2.1:3:1:190850796:1	167284007	167399520	D	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha {ECO:0000313|EMBL:JAB08006.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047195}  [Source:UniProtKB/TrEMBL;Acc:F7ISR8]
ENSCJAG00000007383	KNOWN_BY_PROJECTION	protein_coding	TTC32	chromosome:C_jacchus3.2.1:14:1:108792865:1	88698948	88703961	D	tetratricopeptide repeat domain 32 [Source:HGNC Symbol;Acc:HGNC:32954]
ENSCJAG00000007379	KNOWN_BY_PROJECTION	protein_coding	OSR1	chromosome:C_jacchus3.2.1:14:1:108792865:1	89267561	89274651	D	odd-skipped related transciption factor 1 [Source:HGNC Symbol;Acc:HGNC:8111]
ENSCJAG00000001071	KNOWN	protein_coding	KDM2A	chromosome:C_jacchus3.2.1:11:1:130397257:1	122891111	123039423	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001924}  [Source:UniProtKB/TrEMBL;Acc:F6XR13]
ENSCJAG00000015447	NOVEL	protein_coding	ENSCJAG00000015447	chromosome:C_jacchus3.2.1:2:1:204313951:1	24892941	24894408	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048749}  [Source:UniProtKB/TrEMBL;Acc:F6QK15]
ENSCJAG00000015336	KNOWN	protein_coding	ACACA	chromosome:C_jacchus3.2.1:5:1:159171411:1	87511500	87832799	R	Acetyl-CoA carboxylase 1 isoform 1 {ECO:0000313|EMBL:JAB25616.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028410}  [Source:UniProtKB/TrEMBL;Acc:F6XFU0]
ENSCJAG00000007361	NOVEL	protein_coding	ENSCJAG00000007361	chromosome:C_jacchus3.2.1:14:1:108792865:1	90042165	90071581	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013721}  [Source:UniProtKB/TrEMBL;Acc:F6XRK7]
ENSCJAG00000009289	KNOWN_BY_PROJECTION	protein_coding	RAD9B	chromosome:C_jacchus3.2.1:9:1:124281992:1	100649423	100680836	D	RAD9 homolog B (S. pombe) [Source:HGNC Symbol;Acc:HGNC:21700]
ENSCJAG00000007355	KNOWN	protein_coding	RDH14	chromosome:C_jacchus3.2.1:14:1:108792865:1	90074041	90079989	D	Retinol dehydrogenase 14 {ECO:0000313|EMBL:JAB09808.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013693}  [Source:UniProtKB/TrEMBL;Acc:F7AE01]
ENSCJAG00000007354	KNOWN	protein_coding	KCNS3	chromosome:C_jacchus3.2.1:14:1:108792865:1	90670144	90685799	R	Potassium voltage-gated channel subfamily S member 3 {ECO:0000313|EMBL:JAB28638.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013687}  [Source:UniProtKB/TrEMBL;Acc:F7AEV5]
ENSCJAG00000007327	KNOWN_BY_PROJECTION	protein_coding	GEN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	90819052	90851114	R	GEN1 Holliday junction 5' flap endonuclease [Source:HGNC Symbol;Acc:HGNC:26881]
ENSCJAG00000018230	KNOWN_BY_PROJECTION	protein_coding	TTF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	176457349	176486453	R	transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
ENSCJAG00000000032	KNOWN_BY_PROJECTION	protein_coding	TENM2	chromosome:C_jacchus3.2.1:2:1:204313951:1	29097810	29502637	D	teneurin transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:29943]
ENSCJAG00000001006	KNOWN	protein_coding	ADRBK1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123057302	123180568	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001792}  [Source:UniProtKB/TrEMBL;Acc:F6VYE3]
ENSCJAG00000018363	KNOWN	protein_coding	SLK	chromosome:C_jacchus3.2.1:12:1:121768101:1	91431273	91490333	D	STE20-like serine/threonine-protein kinase {ECO:0000313|EMBL:JAB09553.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034081}  [Source:UniProtKB/TrEMBL;Acc:F6ZBG9]
ENSCJAG00000011063	KNOWN	protein_coding	GCLC	chromosome:C_jacchus3.2.1:4:1:171630274:1	54718031	54766117	R	Glutamate--cysteine ligase catalytic subunit isoform a {ECO:0000313|EMBL:JAB05172.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043488}  [Source:UniProtKB/TrEMBL;Acc:F7I383]
ENSCJAG00000006932	KNOWN_BY_PROJECTION	protein_coding	USP33	chromosome:C_jacchus3.2.1:7:1:155834243:1	113480556	113702403	R	ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
ENSCJAG00000018226	KNOWN_BY_PROJECTION	protein_coding	C9orf171	chromosome:C_jacchus3.2.1:1:1:210400635:1	176569046	176586322	D	chromosome 9 open reading frame 171 [Source:HGNC Symbol;Acc:HGNC:33776]
ENSCJAG00000004204	KNOWN	protein_coding	PIR	chromosome:C_jacchus3.2.1:X:1:142054208:1	13511923	13638248	R	Pirin {ECO:0000313|EMBL:JAB03093.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007665}  [Source:UniProtKB/TrEMBL;Acc:F6TNI5]
ENSCJAG00000018212	KNOWN	protein_coding	BARHL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	176668355	176676030	D	BarH-like 1 homeobox protein {ECO:0000313|EMBL:JAB45466.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033709}  [Source:UniProtKB/TrEMBL;Acc:F6U1C3]
ENSCJAG00000031471	KNOWN_BY_PROJECTION	protein_coding	ZBTB38	chromosome:C_jacchus3.2.1:17:1:74750902:1	35162019	35182296	R	zinc finger and BTB domain containing 38 [Source:HGNC Symbol;Acc:HGNC:26636]
ENSCJAG00000006981	KNOWN_BY_PROJECTION	protein_coding	FAM73A	chromosome:C_jacchus3.2.1:7:1:155834243:1	113565319	113668224	D	family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
ENSCJAG00000002072	KNOWN_BY_PROJECTION	protein_coding	PXYLP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	35327918	35392126	R	2-phosphoxylose phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:26303]
ENSCJAG00000009270	KNOWN	protein_coding	PPTC7	chromosome:C_jacchus3.2.1:9:1:124281992:1	100685925	100737152	R	Protein phosphatase PTC7 homolog {ECO:0000313|EMBL:JAB08455.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016999}  [Source:UniProtKB/TrEMBL;Acc:F7B3T3]
ENSCJAG00000007282	KNOWN_BY_PROJECTION	protein_coding	SMC6	chromosome:C_jacchus3.2.1:14:1:108792865:1	90851910	90950957	D	structural maintenance of chromosomes 6 [Source:HGNC Symbol;Acc:HGNC:20466]
ENSCJAG00000002091	KNOWN_BY_PROJECTION	protein_coding	SPSB4	chromosome:C_jacchus3.2.1:17:1:74750902:1	35447326	35531257	R	splA/ryanodine receptor domain and SOCS box containing 4 [Source:HGNC Symbol;Acc:HGNC:30630]
ENSCJAG00000018173	KNOWN_BY_PROJECTION	protein_coding	DDX31	chromosome:C_jacchus3.2.1:1:1:210400635:1	176680319	176757412	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
ENSCJAG00000013020	KNOWN	protein_coding	GBA3	chromosome:C_jacchus3.2.1:3:1:190850796:1	168467597	168523163	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023903}  [Source:UniProtKB/TrEMBL;Acc:F7GLB8]
ENSCJAG00000002092	KNOWN	protein_coding	SLC25A36	chromosome:C_jacchus3.2.1:17:1:74750902:1	35592619	35635951	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003819}  [Source:UniProtKB/TrEMBL;Acc:F7GZ44]
ENSCJAG00000009267	NOVEL	pseudogene	ENSCJAG00000009267	chromosome:C_jacchus3.2.1:9:1:124281992:1	100758213	100759115	R	<no descrition>
ENSCJAG00000002122	NOVEL	pseudogene	ENSCJAG00000002122	chromosome:C_jacchus3.2.1:17:1:74750902:1	35672225	35672677	R	<no descrition>
ENSCJAG00000002126	KNOWN_BY_PROJECTION	protein_coding	TRIM42	chromosome:C_jacchus3.2.1:17:1:74750902:1	35867477	35890039	R	tripartite motif containing 42 [Source:HGNC Symbol;Acc:HGNC:19014]
ENSCJAG00000000040	KNOWN	protein_coding	WWC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	29526363	29715607	D	Protein KIBRA isoform 3 {ECO:0000313|EMBL:JAB27247.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000086}  [Source:UniProtKB/TrEMBL;Acc:F7GTR6]
ENSCJAG00000002137	KNOWN_BY_PROJECTION	protein_coding	CLSTN2	chromosome:C_jacchus3.2.1:17:1:74750902:1	36012990	36186198	R	calsyntenin 2 [Source:HGNC Symbol;Acc:HGNC:17448]
ENSCJAG00000009202	KNOWN	protein_coding	TCTN1	chromosome:C_jacchus3.2.1:9:1:124281992:1	100774556	100813486	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016947}  [Source:UniProtKB/TrEMBL;Acc:F7CH68]
ENSCJAG00000011053	KNOWN	protein_coding	KLHL31	chromosome:C_jacchus3.2.1:4:1:171630274:1	54864706	54868353	R	Kelch-like protein 31 {ECO:0000313|EMBL:JAB40001.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020394}  [Source:UniProtKB/TrEMBL;Acc:F7FXP4]
ENSCJAG00000011051	NOVEL	pseudogene	ENSCJAG00000011051	chromosome:C_jacchus3.2.1:4:1:171630274:1	54899147	54899550	R	<no descrition>
ENSCJAG00000001059	KNOWN	protein_coding	ANKRD13D	chromosome:C_jacchus3.2.1:11:1:130397257:1	123070045	123084438	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001825}  [Source:UniProtKB/TrEMBL;Acc:F7CB57]
ENSCJAG00000010969	KNOWN	protein_coding	LRRC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	55011768	55147182	D	Leucine-rich repeat-containing protein 1 {ECO:0000313|EMBL:JAB07724.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020374}  [Source:UniProtKB/TrEMBL;Acc:F7GK77]
ENSCJAG00000002162	KNOWN	protein_coding	NMNAT3	chromosome:C_jacchus3.2.1:17:1:74750902:1	36940656	37041151	D	Nicotinamide mononucleotide adenylyltransferase 3 isoform 2 {ECO:0000313|EMBL:JAB16794.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003884}  [Source:UniProtKB/TrEMBL;Acc:F7GG71]
ENSCJAG00000002172	KNOWN_BY_PROJECTION	protein_coding	RBP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	37071158	37096637	D	retinol binding protein 1, cellular [Source:HGNC Symbol;Acc:HGNC:9919]
ENSCJAG00000007017	KNOWN	protein_coding	NEXN	chromosome:C_jacchus3.2.1:7:1:155834243:1	113679827	113724444	D	Nexilin isoform 2 {ECO:0000313|EMBL:JAB04716.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013060}  [Source:UniProtKB/TrEMBL;Acc:F6ZK06]
ENSCJAG00000002188	KNOWN_BY_PROJECTION	protein_coding	RBP2	chromosome:C_jacchus3.2.1:17:1:74750902:1	37125933	37148370	D	retinol binding protein 2, cellular [Source:HGNC Symbol;Acc:HGNC:9920]
ENSCJAG00000018166	KNOWN	protein_coding	GTF3C4	chromosome:C_jacchus3.2.1:1:1:210400635:1	176757430	176778506	D	General transcription factor 3C polypeptide 4 {ECO:0000313|EMBL:JAB16080.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033601}  [Source:UniProtKB/TrEMBL;Acc:F6RWQ0]
ENSCJAG00000012977	KNOWN	protein_coding	GPR125	chromosome:C_jacchus3.2.1:3:1:190850796:1	168661471	168796876	D	Putative G-protein coupled receptor 125 {ECO:0000313|EMBL:JAB21821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023897}  [Source:UniProtKB/TrEMBL;Acc:F7GX18]
ENSCJAG00000018142	KNOWN_BY_PROJECTION	protein_coding	AK8	chromosome:C_jacchus3.2.1:1:1:210400635:1	176816822	176978794	R	adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
ENSCJAG00000007268	KNOWN	protein_coding	VSNL1	chromosome:C_jacchus3.2.1:14:1:108792865:1	90958631	91071981	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013555}; Visinin-like protein 1 {ECO:0000313|EMBL:JAB23076.1}  [Source:UniProtKB/TrEMBL;Acc:F6YXV9]
ENSCJAG00000002200	KNOWN	protein_coding	COPB2	chromosome:C_jacchus3.2.1:17:1:74750902:1	37201934	37240003	D	Coatomer subunit beta {ECO:0000313|EMBL:JAB06788.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004015}  [Source:UniProtKB/TrEMBL;Acc:F6YR44]
ENSCJAG00000000956	KNOWN	protein_coding	SSH3	chromosome:C_jacchus3.2.1:11:1:130397257:1	123085479	123231166	D	Protein phosphatase Slingshot homolog 3 {ECO:0000313|EMBL:JAB03582.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001640}  [Source:UniProtKB/TrEMBL;Acc:F7CT12]
ENSCJAG00000007262	KNOWN_BY_PROJECTION	protein_coding	RAD51AP2	chromosome:C_jacchus3.2.1:14:1:108792865:1	91096891	91103985	D	RAD51 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:34417]
ENSCJAG00000031223	KNOWN	protein_coding	C9ORF9	chromosome:C_jacchus3.2.1:1:1:210400635:1	176979457	176990904	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045893}; Uncharacterized protein C9orf9 {ECO:0000313|EMBL:JAB24980.1}  [Source:UniProtKB/TrEMBL;Acc:F6PR18]
ENSCJAG00000000049	NOVEL	protein_coding	ENSCJAG00000000049	chromosome:C_jacchus3.2.1:2:1:204313951:1	29560253	29560585	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000087}  [Source:UniProtKB/TrEMBL;Acc:F7GTR2]
ENSCJAG00000031724	NOVEL	pseudogene	ENSCJAG00000031724	chromosome:C_jacchus3.2.1:1:1:210400635:1	176990461	176990620	D	<no descrition>
ENSCJAG00000008981	KNOWN	protein_coding	RAB2B	chromosome:C_jacchus3.2.1:10:1:132174527:1	45629197	45649159	R	Ras-related protein Rab-2B isoform 1 {ECO:0000313|EMBL:JAB10736.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016460}  [Source:UniProtKB/TrEMBL;Acc:F6W8X9]
ENSCJAG00000001056	NOVEL	protein_coding	ENSCJAG00000001056	chromosome:C_jacchus3.2.1:11:1:130397257:1	123131311	123134130	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001807}  [Source:UniProtKB/TrEMBL;Acc:F7CBH4]
ENSCJAG00000015436	KNOWN_BY_PROJECTION	protein_coding	C17orf78	chromosome:C_jacchus3.2.1:5:1:159171411:1	87789592	87812612	D	chromosome 17 open reading frame 78 [Source:HGNC Symbol;Acc:HGNC:26831]
ENSCJAG00000023423	NOVEL	pseudogene	ENSCJAG00000023423	chromosome:C_jacchus3.2.1:1:1:210400635:1	176991205	176991380	R	<no descrition>
ENSCJAG00000015491	KNOWN	protein_coding	RARS	chromosome:C_jacchus3.2.1:2:1:204313951:1	29735389	29771465	D	Arginine--tRNA ligase, cytoplasmic {ECO:0000313|EMBL:JAB12152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028620}  [Source:UniProtKB/TrEMBL;Acc:F6WS67]
ENSCJAG00000007231	KNOWN	protein_coding	FAM49A	chromosome:C_jacchus3.2.1:14:1:108792865:1	91916516	91987183	D	Protein FAM49A {ECO:0000313|EMBL:JAB07253.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013513}  [Source:UniProtKB/TrEMBL;Acc:F6ZY83]
ENSCJAG00000004237	KNOWN_BY_PROJECTION	protein_coding	BMX	chromosome:C_jacchus3.2.1:X:1:142054208:1	13600216	13704726	D	BMX non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:1079]
ENSCJAG00000018087	KNOWN	protein_coding	TSC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	176996807	177029345	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033505}  [Source:UniProtKB/TrEMBL;Acc:F6PIQ9]
ENSCJAG00000015275	KNOWN	protein_coding	TADA2A	chromosome:C_jacchus3.2.1:5:1:159171411:1	87833490	87904887	D	Transcriptional adapter 2-alpha isoform a {ECO:0000313|EMBL:JAB04639.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028227}  [Source:UniProtKB/TrEMBL;Acc:F6WVG4]
ENSCJAG00000008956	KNOWN	protein_coding	TOX4	chromosome:C_jacchus3.2.1:10:1:132174527:1	45649489	45668824	D	TOX high mobility group box family member 4 {ECO:0000313|EMBL:JAB10002.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016417}  [Source:UniProtKB/TrEMBL;Acc:F6YMT0]
ENSCJAG00000007222	KNOWN_BY_PROJECTION	protein_coding	MYCN	chromosome:C_jacchus3.2.1:14:1:108792865:1	92604174	92609289	R	v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog [Source:HGNC Symbol;Acc:HGNC:7559]
ENSCJAG00000007218	NOVEL	pseudogene	ENSCJAG00000007218	chromosome:C_jacchus3.2.1:14:1:108792865:1	92680832	92681157	R	<no descrition>
ENSCJAG00000033270	NOVEL	protein_coding	ENSCJAG00000033270	chromosome:C_jacchus3.2.1:14:1:108792865:1	92859579	92860859	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049016}  [Source:UniProtKB/TrEMBL;Acc:F6YK19]
ENSCJAG00000001052	KNOWN	protein_coding	CLCF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123145552	123156435	R	Cardiotrophin-like cytokine factor 1 isoform 1 {ECO:0000313|EMBL:JAB02953.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001799}  [Source:UniProtKB/TrEMBL;Acc:F6VY17]
ENSCJAG00000000983	KNOWN_BY_PROJECTION	protein_coding	PPP1CA	chromosome:C_jacchus3.2.1:11:1:130397257:1	123181763	123207426	R	protein phosphatase 1, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:HGNC:9281]
ENSCJAG00000002236	KNOWN	protein_coding	MRPS22	chromosome:C_jacchus3.2.1:17:1:74750902:1	37240387	37253952	R	28S ribosomal protein S22, mitochondrial {ECO:0000313|EMBL:JAB04231.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004028}  [Source:UniProtKB/TrEMBL;Acc:F6YQN0]
ENSCJAG00000000998	KNOWN_BY_PROJECTION	protein_coding	TBC1D10C	chromosome:C_jacchus3.2.1:11:1:130397257:1	123190396	123196423	D	TBC1 domain family, member 10C [Source:HGNC Symbol;Acc:HGNC:24702]
ENSCJAG00000015270	KNOWN	protein_coding	DUSP14	chromosome:C_jacchus3.2.1:5:1:159171411:1	87918240	87942770	D	Dual specificity protein phosphatase 14 {ECO:0000313|EMBL:JAB08112.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046512}  [Source:UniProtKB/TrEMBL;Acc:F7I8K4]
ENSCJAG00000018404	KNOWN_BY_PROJECTION	protein_coding	COL17A1	chromosome:C_jacchus3.2.1:12:1:121768101:1	91495163	91551523	R	collagen, type XVII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2194]
ENSCJAG00000002245	NOVEL	protein_coding	ENSCJAG00000002245	chromosome:C_jacchus3.2.1:17:1:74750902:1	37533123	37569326	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004032}  [Source:UniProtKB/TrEMBL;Acc:F6Y7Q3]
ENSCJAG00000007062	KNOWN_BY_PROJECTION	protein_coding	FUBP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	113727828	113763382	R	far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
ENSCJAG00000015274	NOVEL	pseudogene	ENSCJAG00000015274	chromosome:C_jacchus3.2.1:5:1:159171411:1	87921755	87922109	R	<no descrition>
ENSCJAG00000002248	NOVEL	protein_coding	ENSCJAG00000002248	chromosome:C_jacchus3.2.1:17:1:74750902:1	37567749	37584931	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048406}  [Source:UniProtKB/TrEMBL;Acc:F7EHE1]
ENSCJAG00000000981	KNOWN_BY_PROJECTION	protein_coding	CARNS1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123202045	123211809	D	carnosine synthase 1 [Source:HGNC Symbol;Acc:HGNC:29268]
ENSCJAG00000018071	KNOWN_BY_PROJECTION	protein_coding	GFI1B	chromosome:C_jacchus3.2.1:1:1:210400635:1	177080738	177094057	D	growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:HGNC:4238]
ENSCJAG00000015209	KNOWN	protein_coding	SYNRG	chromosome:C_jacchus3.2.1:5:1:159171411:1	87947222	88046229	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028122}  [Source:UniProtKB/TrEMBL;Acc:F7B9D4]
ENSCJAG00000012939	KNOWN_BY_PROJECTION	protein_coding	KCNIP4	chromosome:C_jacchus3.2.1:3:1:190850796:1	170263553	170508728	D	Kv channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
ENSCJAG00000015548	KNOWN_BY_PROJECTION	protein_coding	FBLL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	29792501	29793994	D	fibrillarin-like 1 [Source:HGNC Symbol;Acc:HGNC:35458]
ENSCJAG00000015550	KNOWN	protein_coding	PANK3	chromosome:C_jacchus3.2.1:2:1:204313951:1	29814197	29837935	R	Pantothenate kinase 3 {ECO:0000313|EMBL:JAB11205.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044183}  [Source:UniProtKB/TrEMBL;Acc:F7FKC8]
ENSCJAG00000007076	KNOWN	protein_coding	DDX1	chromosome:C_jacchus3.2.1:14:1:108792865:1	92934527	92971181	R	ATP-dependent RNA helicase DDX1 {ECO:0000313|EMBL:JAB08883.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013408}  [Source:UniProtKB/TrEMBL;Acc:F6X741]
ENSCJAG00000015563	KNOWN_BY_PROJECTION	protein_coding	SLIT3	chromosome:C_jacchus3.2.1:2:1:204313951:1	29928430	29991576	R	slit homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11087]
ENSCJAG00000000967	KNOWN_BY_PROJECTION	protein_coding	RPS6KB2	chromosome:C_jacchus3.2.1:11:1:130397257:1	123219901	123226443	D	ribosomal protein S6 kinase, 70kDa, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:10437]
ENSCJAG00000002249	KNOWN_BY_PROJECTION	protein_coding	FOXL2NB	chromosome:C_jacchus3.2.1:17:1:74750902:1	37648635	37651783	R	FOXL2 neighbor [Source:HGNC Symbol;Acc:HGNC:34428]
ENSCJAG00000033729	NOVEL	protein_coding	ENSCJAG00000033729	chromosome:C_jacchus3.2.1:17:1:74750902:1	37710586	37712748	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044720}  [Source:UniProtKB/TrEMBL;Acc:F7GQM8]
ENSCJAG00000004745	KNOWN_BY_PROJECTION	protein_coding	SPDL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	30871948	30930436	D	spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
ENSCJAG00000002252	KNOWN	protein_coding	PIK3CB	chromosome:C_jacchus3.2.1:17:1:74750902:1	37831858	37931986	D	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform 1 {ECO:0000313|EMBL:JAB11085.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004132}  [Source:UniProtKB/TrEMBL;Acc:F7CM33]
ENSCJAG00000004290	KNOWN_BY_PROJECTION	protein_coding	ACE2	chromosome:C_jacchus3.2.1:X:1:142054208:1	13709121	13755426	R	angiotensin I converting enzyme 2 [Source:HGNC Symbol;Acc:HGNC:13557]
ENSCJAG00000007150	KNOWN	protein_coding	DNAJB4	chromosome:C_jacchus3.2.1:7:1:155834243:1	113796080	113808534	D	DnaJ homolog subfamily B member 4 {ECO:0000313|EMBL:JAB02362.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013293}  [Source:UniProtKB/TrEMBL;Acc:F6W2E8]
ENSCJAG00000007156	KNOWN	protein_coding	GIPC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	113843644	113935423	D	PDZ domain-containing protein GIPC2 {ECO:0000313|EMBL:JAB05839.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013303}  [Source:UniProtKB/TrEMBL;Acc:F7CET3]
ENSCJAG00000007162	KNOWN_BY_PROJECTION	protein_coding	PTGFR	chromosome:C_jacchus3.2.1:7:1:155834243:1	114299346	114337680	D	prostaglandin F receptor (FP) [Source:HGNC Symbol;Acc:HGNC:9600]
ENSCJAG00000032605	NOVEL	pseudogene	ENSCJAG00000032605	chromosome:C_jacchus3.2.1:17:1:74750902:1	37941659	37942392	D	<no descrition>
ENSCJAG00000007169	KNOWN_BY_PROJECTION	protein_coding	IFI44L	chromosome:C_jacchus3.2.1:7:1:155834243:1	114491180	114495923	D	interferon-induced protein 44-like [Source:HGNC Symbol;Acc:HGNC:17817]
ENSCJAG00000031401	NOVEL	protein_coding	ENSCJAG00000031401	chromosome:C_jacchus3.2.1:2:1:204313951:1	30920904	30926584	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050598}  [Source:UniProtKB/TrEMBL;Acc:F7DQ63]
ENSCJAG00000002299	KNOWN	protein_coding	FAIM	chromosome:C_jacchus3.2.1:17:1:74750902:1	37958388	37980050	R	Fas apoptotic inhibitory molecule 1 isoform b {ECO:0000313|EMBL:JAB15087.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046857}  [Source:UniProtKB/TrEMBL;Acc:F7IMC9]
ENSCJAG00000018039	KNOWN_BY_PROJECTION	protein_coding	GTF3C5	chromosome:C_jacchus3.2.1:1:1:210400635:1	177123236	177143411	D	general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:HGNC:4668]
ENSCJAG00000008893	KNOWN	protein_coding	METTL3	chromosome:C_jacchus3.2.1:10:1:132174527:1	45669618	45683302	R	N6-adenosine-methyltransferase 70 kDa subunit {ECO:0000313|EMBL:JAB07730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016366}  [Source:UniProtKB/TrEMBL;Acc:F7ANV7]
ENSCJAG00000015190	KNOWN_BY_PROJECTION	protein_coding	DDX52	chromosome:C_jacchus3.2.1:5:1:159171411:1	88049908	88079850	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Source:HGNC Symbol;Acc:HGNC:20038]
ENSCJAG00000007171	KNOWN_BY_PROJECTION	protein_coding	ELTD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	114720588	114841702	R	EGF, latrophilin and seven transmembrane domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20822]
ENSCJAG00000018436	KNOWN_BY_PROJECTION	protein_coding	SFR1	chromosome:C_jacchus3.2.1:12:1:121768101:1	91593407	91597116	D	SWI5-dependent recombination repair 1 [Source:HGNC Symbol;Acc:HGNC:29574]
ENSCJAG00000002313	NOVEL	protein_coding	ENSCJAG00000002313	chromosome:C_jacchus3.2.1:17:1:74750902:1	37960757	37962781	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004166}  [Source:UniProtKB/TrEMBL;Acc:F7BRH0]
ENSCJAG00000009181	KNOWN_BY_PROJECTION	protein_coding	HVCN1	chromosome:C_jacchus3.2.1:9:1:124281992:1	100813187	100855399	R	hydrogen voltage gated channel 1 [Source:HGNC Symbol;Acc:HGNC:28240]
ENSCJAG00000015174	KNOWN_BY_PROJECTION	protein_coding	HNF1B	chromosome:C_jacchus3.2.1:5:1:159171411:1	88132878	88184870	R	HNF1 homeobox B [Source:HGNC Symbol;Acc:HGNC:11630]
ENSCJAG00000004765	KNOWN_BY_PROJECTION	protein_coding	CDKL3	chromosome:C_jacchus3.2.1:2:1:204313951:1	31045328	31122336	R	cyclin-dependent kinase-like 3 [Source:HGNC Symbol;Acc:HGNC:15483]
ENSCJAG00000018024	KNOWN_BY_PROJECTION	protein_coding	CEL	chromosome:C_jacchus3.2.1:1:1:210400635:1	177151490	177161568	D	carboxyl ester lipase [Source:HGNC Symbol;Acc:HGNC:1848]
ENSCJAG00000018443	KNOWN	protein_coding	WDR96	chromosome:C_jacchus3.2.1:12:1:121768101:1	91599245	91699766	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034243}; WD repeat-containing protein 96 {ECO:0000313|EMBL:JAB15399.1}  [Source:UniProtKB/TrEMBL;Acc:F7BUL9]
ENSCJAG00000010939	KNOWN_BY_PROJECTION	protein_coding	MLIP	chromosome:C_jacchus3.2.1:4:1:171630274:1	55246347	55535452	D	muscular LMNA-interacting protein [Source:HGNC Symbol;Acc:HGNC:21355]
ENSCJAG00000000963	KNOWN	protein_coding	PTPRCAP	chromosome:C_jacchus3.2.1:11:1:130397257:1	123226527	123228994	R	Protein tyrosine phosphatase receptor type C-associated protein {ECO:0000313|EMBL:JAB06228.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001643}  [Source:UniProtKB/TrEMBL;Acc:F7CSZ1]
ENSCJAG00000004796	KNOWN	protein_coding	UBE2B	chromosome:C_jacchus3.2.1:2:1:204313951:1	31122722	31143791	D	Ubiquitin-conjugating enzyme E2 B {ECO:0000313|EMBL:JAB03141.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008769}  [Source:UniProtKB/TrEMBL;Acc:F7HM77]
ENSCJAG00000010887	KNOWN_BY_PROJECTION	protein_coding	TINAG	chromosome:C_jacchus3.2.1:4:1:171630274:1	55566688	55657860	D	tubulointerstitial nephritis antigen [Source:HGNC Symbol;Acc:HGNC:14599]
ENSCJAG00000000945	KNOWN_BY_PROJECTION	protein_coding	CORO1B	chromosome:C_jacchus3.2.1:11:1:130397257:1	123229349	123235662	R	coronin, actin binding protein, 1B [Source:HGNC Symbol;Acc:HGNC:2253]
ENSCJAG00000002315	KNOWN	protein_coding	CEP70	chromosome:C_jacchus3.2.1:17:1:74750902:1	37991376	38054747	D	Centrosomal protein of 70 kDa {ECO:0000313|EMBL:JAB07243.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047196}  [Source:UniProtKB/TrEMBL;Acc:F7ISR7]
ENSCJAG00000034783	NOVEL	protein_coding	ENSCJAG00000034783	chromosome:C_jacchus3.2.1:7:1:155834243:1	116322004	116322802	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050874}  [Source:UniProtKB/TrEMBL;Acc:F7F8W0]
ENSCJAG00000033530	NOVEL	protein_coding	ENSCJAG00000033530	chromosome:C_jacchus3.2.1:4:1:171630274:1	55764870	55765496	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043984}  [Source:UniProtKB/TrEMBL;Acc:F7INY8]
ENSCJAG00000010872	KNOWN	protein_coding	FAM83B	chromosome:C_jacchus3.2.1:4:1:171630274:1	56162285	56240629	D	Protein FAM83B {ECO:0000313|EMBL:JAB04183.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020057}  [Source:UniProtKB/TrEMBL;Acc:F7HHV7]
ENSCJAG00000012915	KNOWN	protein_coding	PACRGL	chromosome:C_jacchus3.2.1:3:1:190850796:1	170497106	170532804	R	PACRG-like protein isoform 3 {ECO:0000313|EMBL:JAB06605.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023699}  [Source:UniProtKB/TrEMBL;Acc:F7GXB5]
ENSCJAG00000010863	KNOWN_BY_PROJECTION	protein_coding	HCRTR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	56531449	56562830	D	hypocretin (orexin) receptor 2 [Source:HGNC Symbol;Acc:HGNC:4849]
ENSCJAG00000007190	KNOWN	protein_coding	LPHN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	117169851	117864652	D	Latrophilin-2 {ECO:0000313|EMBL:JAB05832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013485}  [Source:UniProtKB/TrEMBL;Acc:F6UU77]
ENSCJAG00000008855	KNOWN	protein_coding	SALL2	chromosome:C_jacchus3.2.1:10:1:132174527:1	45697829	45715779	R	Sal-like protein 2 {ECO:0000313|EMBL:JAB15680.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016265}  [Source:UniProtKB/TrEMBL;Acc:F6WAI8]
ENSCJAG00000009147	KNOWN	protein_coding	ENSCJAG00000009147	chromosome:C_jacchus3.2.1:9:1:124281992:1	100885273	100908354	R	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F6YKN7]
ENSCJAG00000015163	NOVEL	protein_coding	ENSCJAG00000015163	chromosome:C_jacchus3.2.1:5:1:159171411:1	88284293	88291189	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027954}  [Source:UniProtKB/TrEMBL;Acc:F7HJU5]
ENSCJAG00000011660	KNOWN_BY_PROJECTION	protein_coding	CCDC63	chromosome:C_jacchus3.2.1:9:1:124281992:1	101018846	101056592	D	coiled-coil domain containing 63 [Source:HGNC Symbol;Acc:HGNC:26669]
ENSCJAG00000015089	KNOWN_BY_PROJECTION	protein_coding	HEATR6	chromosome:C_jacchus3.2.1:5:1:159171411:1	88304396	88340782	R	HEAT repeat containing 6 [Source:HGNC Symbol;Acc:HGNC:24076]
ENSCJAG00000018000	KNOWN	protein_coding	RALGDS	chromosome:C_jacchus3.2.1:1:1:210400635:1	177196990	177263973	R	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 {ECO:0000313|EMBL:JAB03177.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033234}  [Source:UniProtKB/TrEMBL;Acc:F6R2J3]
ENSCJAG00000007028	KNOWN_BY_PROJECTION	protein_coding	NBAS	chromosome:C_jacchus3.2.1:14:1:108792865:1	93000149	93391670	D	neuroblastoma amplified sequence [Source:HGNC Symbol;Acc:HGNC:15625]
ENSCJAG00000004787	KNOWN	protein_coding	CDKN2AIPNL	chromosome:C_jacchus3.2.1:2:1:204313951:1	31156678	31167524	R	CDKN2AIP N-terminal-like protein {ECO:0000313|EMBL:JAB05844.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008730}  [Source:UniProtKB/TrEMBL;Acc:F7HMF2]
ENSCJAG00000012812	KNOWN_BY_PROJECTION	protein_coding	SLIT2	chromosome:C_jacchus3.2.1:3:1:190850796:1	170589772	170977339	R	slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
ENSCJAG00000004813	KNOWN_BY_PROJECTION	protein_coding	JADE2	chromosome:C_jacchus3.2.1:2:1:204313951:1	31299370	31357374	D	jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
ENSCJAG00000004819	KNOWN	protein_coding	SAR1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	31383554	31411882	R	GTP-binding protein SAR1b {ECO:0000313|EMBL:JAB10950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008838}  [Source:UniProtKB/TrEMBL;Acc:F7IHI6]
ENSCJAG00000033075	NOVEL	protein_coding	ENSCJAG00000033075	chromosome:C_jacchus3.2.1:5:1:159171411:1	88345809	88348941	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044659}  [Source:UniProtKB/TrEMBL;Acc:F7HGT1]
ENSCJAG00000036074	KNOWN_BY_PROJECTION	protein_coding	CCL18	chromosome:C_jacchus3.2.1:5:1:159171411:1	88380802	88381371	D	chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) [Source:HGNC Symbol;Acc:HGNC:10616]
ENSCJAG00000005648	KNOWN	protein_coding	SEC24A	chromosome:C_jacchus3.2.1:2:1:204313951:1	31434480	31487680	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010402}  [Source:UniProtKB/TrEMBL;Acc:F7HZ57]
ENSCJAG00000015069	KNOWN	protein_coding	ENSCJAG00000015069	chromosome:C_jacchus3.2.1:5:1:159171411:1	88395342	88397163	R	C-C motif chemokine {ECO:0000256|RuleBase:RU361150}  [Source:UniProtKB/TrEMBL;Acc:F7H9Q7]
ENSCJAG00000011667	KNOWN_BY_PROJECTION	protein_coding	MYL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	101059717	101068007	R	myosin, light chain 2, regulatory, cardiac, slow [Source:HGNC Symbol;Acc:HGNC:7583]
ENSCJAG00000000943	KNOWN_BY_PROJECTION	protein_coding	GPR152	chromosome:C_jacchus3.2.1:11:1:130397257:1	123243783	123245310	R	G protein-coupled receptor 152 [Source:HGNC Symbol;Acc:HGNC:23622]
ENSCJAG00000005675	KNOWN	protein_coding	CAMLG	chromosome:C_jacchus3.2.1:2:1:204313951:1	31503092	31517419	D	Calcium signal-modulating cyclophilin ligand {ECO:0000313|EMBL:JAB10730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010436}  [Source:UniProtKB/TrEMBL;Acc:F7HWS9]
ENSCJAG00000000939	KNOWN_BY_PROJECTION	protein_coding	CABP4	chromosome:C_jacchus3.2.1:11:1:130397257:1	123244993	123251722	D	calcium binding protein 4 [Source:HGNC Symbol;Acc:HGNC:1386]
ENSCJAG00000011692	NOVEL	pseudogene	ENSCJAG00000011692	chromosome:C_jacchus3.2.1:9:1:124281992:1	101086498	101086716	D	<no descrition>
ENSCJAG00000007187	NOVEL	pseudogene	ENSCJAG00000007187	chromosome:C_jacchus3.2.1:7:1:155834243:1	117265273	117265830	D	<no descrition>
ENSCJAG00000005038	NOVEL	protein_coding	ENSCJAG00000005038	chromosome:C_jacchus3.2.1:7:1:155834243:1	117592426	117595910	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050728}  [Source:UniProtKB/TrEMBL;Acc:F7E544]
ENSCJAG00000000933	KNOWN	protein_coding	TMEM134	chromosome:C_jacchus3.2.1:11:1:130397257:1	123257450	123262327	R	Transmembrane protein 134 isoform a {ECO:0000313|EMBL:JAB15808.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001593}  [Source:UniProtKB/TrEMBL;Acc:F6YEZ0]
ENSCJAG00000011694	KNOWN_BY_PROJECTION	protein_coding	CUX2	chromosome:C_jacchus3.2.1:9:1:124281992:1	101254994	101517755	D	cut-like homeobox 2 [Source:HGNC Symbol;Acc:HGNC:19347]
ENSCJAG00000002351	KNOWN_BY_PROJECTION	protein_coding	ESYT3	chromosome:C_jacchus3.2.1:17:1:74750902:1	38066239	38119001	R	extended synaptotagmin-like protein 3 [Source:HGNC Symbol;Acc:HGNC:24295]
ENSCJAG00000005697	KNOWN	protein_coding	DDX46	chromosome:C_jacchus3.2.1:2:1:204313951:1	31533755	31604866	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010597}  [Source:UniProtKB/TrEMBL;Acc:F7I8F7]
ENSCJAG00000000929	KNOWN	protein_coding	AIP	chromosome:C_jacchus3.2.1:11:1:130397257:1	123273138	123283177	D	AH receptor-interacting protein {ECO:0000313|EMBL:JAB34023.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001578}  [Source:UniProtKB/TrEMBL;Acc:F6YY30]
ENSCJAG00000010859	KNOWN_BY_PROJECTION	protein_coding	GFRAL	chromosome:C_jacchus3.2.1:4:1:171630274:1	56613923	56678163	D	GDNF family receptor alpha like [Source:HGNC Symbol;Acc:HGNC:32789]
ENSCJAG00000018474	KNOWN	protein_coding	ENSCJAG00000018474	chromosome:C_jacchus3.2.1:12:1:121768101:1	91722322	91735780	D	Glutathione S-transferase omega-1 isoform 1 {ECO:0000313|EMBL:JAB12489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034269}  [Source:UniProtKB/TrEMBL;Acc:F7BC21]
ENSCJAG00000031745	NOVEL	pseudogene	ENSCJAG00000031745	chromosome:C_jacchus3.2.1:3:1:190850796:1	172932924	172933342	D	<no descrition>
ENSCJAG00000017966	NOVEL	protein_coding	ENSCJAG00000017966	chromosome:C_jacchus3.2.1:1:1:210400635:1	177306507	177344018	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033177}  [Source:UniProtKB/TrEMBL;Acc:F6S096]
ENSCJAG00000015060	NOVEL	protein_coding	ENSCJAG00000015060	chromosome:C_jacchus3.2.1:5:1:159171411:1	88409182	88411007	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027763}  [Source:UniProtKB/TrEMBL;Acc:F7DBF6]
ENSCJAG00000012800	KNOWN_BY_PROJECTION	protein_coding	LCORL	chromosome:C_jacchus3.2.1:3:1:190850796:1	173265645	173462807	D	ligand dependent nuclear receptor corepressor-like [Source:HGNC Symbol;Acc:HGNC:30776]
ENSCJAG00000010832	KNOWN	protein_coding	HMGCLL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	56717566	56870385	R	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform b {ECO:0000313|EMBL:JAB14276.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050457}  [Source:UniProtKB/TrEMBL;Acc:F7H8Z9]
ENSCJAG00000017975	KNOWN	protein_coding	ENSCJAG00000017975	chromosome:C_jacchus3.2.1:1:1:210400635:1	177320240	177323682	R	Odorant-binding protein 2b {ECO:0000313|EMBL:JAB23725.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033206}  [Source:UniProtKB/TrEMBL;Acc:F6RCV1]
ENSCJAG00000018486	KNOWN_BY_PROJECTION	protein_coding	GSTO2	chromosome:C_jacchus3.2.1:12:1:121768101:1	91736882	91765531	D	glutathione S-transferase omega 2 [Source:HGNC Symbol;Acc:HGNC:23064]
ENSCJAG00000008849	NOVEL	pseudogene	ENSCJAG00000008849	chromosome:C_jacchus3.2.1:10:1:132174527:1	45745341	45746139	D	<no descrition>
ENSCJAG00000008845	KNOWN_BY_PROJECTION	protein_coding	OR10G2	chromosome:C_jacchus3.2.1:10:1:132174527:1	45755212	45757045	R	olfactory receptor, family 10, subfamily G, member 2 [Source:HGNC Symbol;Acc:HGNC:8170]
ENSCJAG00000008836	NOVEL	pseudogene	ENSCJAG00000008836	chromosome:C_jacchus3.2.1:10:1:132174527:1	45790858	45791798	D	<no descrition>
ENSCJAG00000007255	KNOWN	protein_coding	TTLL7	chromosome:C_jacchus3.2.1:7:1:155834243:1	119797263	119939972	R	Tubulin polyglutamylase TTLL7 {ECO:0000313|EMBL:JAB30588.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013643}  [Source:UniProtKB/TrEMBL;Acc:F7CCI9]
ENSCJAG00000011736	KNOWN_BY_PROJECTION	protein_coding	FAM109A	chromosome:C_jacchus3.2.1:9:1:124281992:1	101459321	101541528	R	family with sequence similarity 109, member A [Source:HGNC Symbol;Acc:HGNC:26509]
ENSCJAG00000008831	KNOWN_BY_PROJECTION	protein_coding	TRAV3	chromosome:C_jacchus3.2.1:10:1:132174527:1	45854900	45855341	D	T cell receptor alpha variable 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12128]
ENSCJAG00000002383	KNOWN	protein_coding	MRAS	chromosome:C_jacchus3.2.1:17:1:74750902:1	38150342	38209591	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047047}  [Source:UniProtKB/TrEMBL;Acc:F7I8Z8]
ENSCJAG00000008828	KNOWN_BY_PROJECTION	protein_coding	TRAV5	chromosome:C_jacchus3.2.1:10:1:132174527:1	45877368	45877940	D	T cell receptor alpha variable 5 [Source:HGNC Symbol;Acc:HGNC:12143]
ENSCJAG00000000908	KNOWN	protein_coding	PITPNM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123283870	123299010	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001570}  [Source:UniProtKB/TrEMBL;Acc:F6YYE3]
ENSCJAG00000004341	KNOWN_BY_PROJECTION	protein_coding	TMEM27	chromosome:C_jacchus3.2.1:X:1:142054208:1	13778374	13818665	R	transmembrane protein 27 [Source:HGNC Symbol;Acc:HGNC:29437]
ENSCJAG00000015058	NOVEL	protein_coding	ENSCJAG00000015058	chromosome:C_jacchus3.2.1:5:1:159171411:1	88484191	88489181	D	C-C motif chemokine {ECO:0000256|RuleBase:RU361150}  [Source:UniProtKB/TrEMBL;Acc:F7DSV3]
ENSCJAG00000015053	KNOWN	protein_coding	CCL14	chromosome:C_jacchus3.2.1:5:1:159171411:1	88496771	88499806	D	C-C motif chemokine {ECO:0000256|RuleBase:RU361150}  [Source:UniProtKB/TrEMBL;Acc:F7DTD1]
ENSCJAG00000008714	KNOWN_BY_PROJECTION	protein_coding	TRDC	chromosome:C_jacchus3.2.1:10:1:132174527:1	45897208	46617904	D	T cell receptor delta constant [Source:HGNC Symbol;Acc:HGNC:12253]
ENSCJAG00000015050	KNOWN_BY_PROJECTION	protein_coding	CCL16	chromosome:C_jacchus3.2.1:5:1:159171411:1	88502001	88505471	D	chemokine (C-C motif) ligand 16 [Source:HGNC Symbol;Acc:HGNC:10614]
ENSCJAG00000015046	KNOWN_BY_PROJECTION	protein_coding	LYZL6	chromosome:C_jacchus3.2.1:5:1:159171411:1	88519228	88529298	D	lysozyme-like 6 [Source:HGNC Symbol;Acc:HGNC:29614]
ENSCJAG00000012811	NOVEL	protein_coding	ENSCJAG00000012811	chromosome:C_jacchus3.2.1:3:1:190850796:1	173432296	173434248	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023466}  [Source:UniProtKB/TrEMBL;Acc:F7IKI0]
ENSCJAG00000002391	KNOWN_BY_PROJECTION	protein_coding	NME9	chromosome:C_jacchus3.2.1:17:1:74750902:1	38234733	38260321	D	NME/NM23 family member 9 [Source:HGNC Symbol;Acc:HGNC:21343]
ENSCJAG00000010807	KNOWN_BY_PROJECTION	protein_coding	BMP5	chromosome:C_jacchus3.2.1:4:1:171630274:1	57038484	57180446	R	bone morphogenetic protein 5 [Source:HGNC Symbol;Acc:HGNC:1072]
ENSCJAG00000008817	NOVEL	protein_coding	ENSCJAG00000008817	chromosome:C_jacchus3.2.1:10:1:132174527:1	45917712	45919728	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049229}  [Source:UniProtKB/TrEMBL;Acc:F6W224]
ENSCJAG00000008813	NOVEL	protein_coding	ENSCJAG00000008813	chromosome:C_jacchus3.2.1:10:1:132174527:1	45935126	45935611	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016161}  [Source:UniProtKB/TrEMBL;Acc:F7AQ55]
ENSCJAG00000008761	KNOWN_BY_PROJECTION	protein_coding	TRAV8-3	chromosome:C_jacchus3.2.1:10:1:132174527:1	45938256	45938961	D	T cell receptor alpha variable 8-3 [Source:HGNC Symbol;Acc:HGNC:12148]
ENSCJAG00000008803	NOVEL	protein_coding	ENSCJAG00000008803	chromosome:C_jacchus3.2.1:10:1:132174527:1	45975071	45975670	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016147}  [Source:UniProtKB/TrEMBL;Acc:F7B9M3]
ENSCJAG00000017958	NOVEL	protein_coding	ENSCJAG00000017958	chromosome:C_jacchus3.2.1:1:1:210400635:1	177372380	177379748	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033161}  [Source:UniProtKB/TrEMBL;Acc:F6SAC6]
ENSCJAG00000017951	KNOWN_BY_PROJECTION	protein_coding	SURF6	chromosome:C_jacchus3.2.1:1:1:210400635:1	177383186	177386262	D	surfeit 6 [Source:HGNC Symbol;Acc:HGNC:11478]
ENSCJAG00000012738	KNOWN_BY_PROJECTION	protein_coding	NCAPG	chromosome:C_jacchus3.2.1:3:1:190850796:1	173461208	173500199	R	non-SMC condensin I complex, subunit G [Source:HGNC Symbol;Acc:HGNC:24304]
ENSCJAG00000017944	KNOWN	protein_coding	ABO	chromosome:C_jacchus3.2.1:1:1:210400635:1	177433887	177444017	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033136}  [Source:UniProtKB/TrEMBL;Acc:F6SLJ5]
ENSCJAG00000009542	NOVEL	protein_coding	ENSCJAG00000009542	chromosome:C_jacchus3.2.1:1:1:210400635:1	177464831	177468491	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017486}  [Source:UniProtKB/TrEMBL;Acc:F7IRK9]
ENSCJAG00000009532	NOVEL	protein_coding	ENSCJAG00000009532	chromosome:C_jacchus3.2.1:1:1:210400635:1	177468631	177474035	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017471}  [Source:UniProtKB/TrEMBL;Acc:F7HLC8]
ENSCJAG00000000904	KNOWN	protein_coding	CDK2AP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	123300137	123302287	R	Cyclin-dependent kinase 2-associated protein 2 isoform 1 {ECO:0000313|EMBL:JAB16873.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001535}  [Source:UniProtKB/TrEMBL;Acc:F6ZYF1]
ENSCJAG00000009510	NOVEL	protein_coding	ENSCJAG00000009510	chromosome:C_jacchus3.2.1:1:1:210400635:1	177475715	177479786	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017447}  [Source:UniProtKB/TrEMBL;Acc:F7HW13]
ENSCJAG00000011744	NOVEL	protein_coding	ENSCJAG00000011744	chromosome:C_jacchus3.2.1:9:1:124281992:1	101554215	101556160	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052146}  [Source:UniProtKB/TrEMBL;Acc:F7I0D4]
ENSCJAG00000032456	NOVEL	protein_coding	ENSCJAG00000032456	chromosome:C_jacchus3.2.1:9:1:124281992:1	101565464	101566343	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022436}  [Source:UniProtKB/TrEMBL;Acc:F7HTZ7]
ENSCJAG00000015031	KNOWN_BY_PROJECTION	protein_coding	RDM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	88533032	88692564	D	RAD52 motif containing 1 [Source:HGNC Symbol;Acc:HGNC:19950]
ENSCJAG00000011750	KNOWN_BY_PROJECTION	protein_coding	SH2B3	chromosome:C_jacchus3.2.1:9:1:124281992:1	101591294	101622553	D	SH2B adaptor protein 3 [Source:HGNC Symbol;Acc:HGNC:29605]
ENSCJAG00000007331	KNOWN	protein_coding	PRKACB	chromosome:C_jacchus3.2.1:7:1:155834243:1	120010818	120168502	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013708}; cAMP-dependent protein kinase catalytic subunit beta isoform 1 {ECO:0000313|EMBL:JAB07426.1}  [Source:UniProtKB/TrEMBL;Acc:F6YD93]
ENSCJAG00000000890	KNOWN_BY_PROJECTION	protein_coding	CABP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	123316786	123321068	R	calcium binding protein 2 [Source:HGNC Symbol;Acc:HGNC:1385]
ENSCJAG00000018498	KNOWN_BY_PROJECTION	protein_coding	ITPRIP	chromosome:C_jacchus3.2.1:12:1:121768101:1	91778612	91780699	R	inositol 1,4,5-trisphosphate receptor interacting protein [Source:HGNC Symbol;Acc:HGNC:29370]
ENSCJAG00000009746	KNOWN_BY_PROJECTION	protein_coding	STKLD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	177489102	177536137	D	serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
ENSCJAG00000018501	KNOWN	protein_coding	CCDC147	chromosome:C_jacchus3.2.1:12:1:121768101:1	91804122	91947293	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034302}  [Source:UniProtKB/TrEMBL;Acc:F6ZSE2]
ENSCJAG00000000879	KNOWN	protein_coding	GSTP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123390561	123393531	D	Glutathione S-transferase P {ECO:0000313|EMBL:JAB24496.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001509}  [Source:UniProtKB/TrEMBL;Acc:F7AF90]
ENSCJAG00000031574	NOVEL	pseudogene	ENSCJAG00000031574	chromosome:C_jacchus3.2.1:11:1:130397257:1	123410698	123411808	R	<no descrition>
ENSCJAG00000005779	KNOWN	protein_coding	C5ORF24	chromosome:C_jacchus3.2.1:2:1:204313951:1	31621720	31634577	D	UPF0461 protein C5orf24 {ECO:0000313|EMBL:JAB04260.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015586}  [Source:UniProtKB/TrEMBL;Acc:F7DCU5]
ENSCJAG00000005793	KNOWN_BY_PROJECTION	protein_coding	PCBD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	31685949	31734896	D	pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 [Source:HGNC Symbol;Acc:HGNC:24474]
ENSCJAG00000009774	KNOWN	protein_coding	REXO4	chromosome:C_jacchus3.2.1:1:1:210400635:1	177516512	177701249	R	RNA exonuclease 4 {ECO:0000313|EMBL:JAB07703.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017942}  [Source:UniProtKB/TrEMBL;Acc:F7IBY7]
ENSCJAG00000005799	KNOWN_BY_PROJECTION	protein_coding	CATSPER3	chromosome:C_jacchus3.2.1:2:1:204313951:1	31741397	31796949	D	cation channel, sperm associated 3 [Source:HGNC Symbol;Acc:HGNC:20819]
ENSCJAG00000010723	KNOWN_BY_PROJECTION	protein_coding	COL21A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	57375570	57586697	R	collagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:17025]
ENSCJAG00000005806	KNOWN	protein_coding	PITX1	chromosome:C_jacchus3.2.1:2:1:204313951:1	31811514	31818501	R	Pituitary homeobox 1 {ECO:0000313|EMBL:JAB06310.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010663}  [Source:UniProtKB/TrEMBL;Acc:F7HTS7]
ENSCJAG00000002405	KNOWN_BY_PROJECTION	protein_coding	ARMC8	chromosome:C_jacchus3.2.1:17:1:74750902:1	38264959	38378472	R	armadillo repeat containing 8 [Source:HGNC Symbol;Acc:HGNC:24999]
ENSCJAG00000011756	KNOWN_BY_PROJECTION	protein_coding	ATXN2	chromosome:C_jacchus3.2.1:9:1:124281992:1	101626804	101773968	R	ataxin 2 [Source:HGNC Symbol;Acc:HGNC:10555]
ENSCJAG00000000839	KNOWN	protein_coding	NDUFV1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123428553	123434435	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001470}  [Source:UniProtKB/TrEMBL;Acc:F6W1A8]
ENSCJAG00000005818	KNOWN	protein_coding	H2AFY	chromosome:C_jacchus3.2.1:2:1:204313951:1	32130687	32195745	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F7HN69]
ENSCJAG00000015026	NOVEL	protein_coding	ENSCJAG00000015026	chromosome:C_jacchus3.2.1:5:1:159171411:1	88578257	88579415	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027681}  [Source:UniProtKB/TrEMBL;Acc:F7G4Y3]
ENSCJAG00000015021	KNOWN_BY_PROJECTION	protein_coding	CCL5	chromosome:C_jacchus3.2.1:5:1:159171411:1	88585852	88592287	D	chemokine (C-C motif) ligand 5 [Source:HGNC Symbol;Acc:HGNC:10632]
ENSCJAG00000034903	NOVEL	pseudogene	ENSCJAG00000034903	chromosome:C_jacchus3.2.1:7:1:155834243:1	120019145	120019642	D	<no descrition>
ENSCJAG00000015007	KNOWN_BY_PROJECTION	protein_coding	HEATR9	chromosome:C_jacchus3.2.1:5:1:159171411:1	88597193	88609699	D	HEAT repeat containing 9 [Source:HGNC Symbol;Acc:HGNC:26548]
ENSCJAG00000007374	KNOWN	protein_coding	SAMD13	chromosome:C_jacchus3.2.1:7:1:155834243:1	120229274	120274852	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044013}  [Source:UniProtKB/TrEMBL;Acc:F7HHS4]
ENSCJAG00000005887	KNOWN_BY_PROJECTION	protein_coding	TIFAB	chromosome:C_jacchus3.2.1:2:1:204313951:1	32240284	32243825	R	TRAF-interacting protein with forkhead-associated domain, family member B [Source:HGNC Symbol;Acc:HGNC:34024]
ENSCJAG00000032012	NOVEL	protein_coding	ENSCJAG00000032012	chromosome:C_jacchus3.2.1:X:1:142054208:1	13843772	13855314	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047387}  [Source:UniProtKB/TrEMBL;Acc:F7HUK5]
ENSCJAG00000004351	NOVEL	protein_coding	ENSCJAG00000004351	chromosome:C_jacchus3.2.1:X:1:142054208:1	13854887	13855365	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007861}  [Source:UniProtKB/TrEMBL;Acc:F7C8C4]
ENSCJAG00000000091	NOVEL	pseudogene	ENSCJAG00000000091	chromosome:C_jacchus3.2.1:X:1:142054208:1	13878024	13878793	D	<no descrition>
ENSCJAG00000005899	KNOWN_BY_PROJECTION	protein_coding	NEUROG1	chromosome:C_jacchus3.2.1:2:1:204313951:1	32349271	32350985	R	neurogenin 1 [Source:HGNC Symbol;Acc:HGNC:7764]
ENSCJAG00000032399	NOVEL	protein_coding	ENSCJAG00000032399	chromosome:C_jacchus3.2.1:7:1:155834243:1	120268757	120269333	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048007}  [Source:UniProtKB/TrEMBL;Acc:F7GNF0]
ENSCJAG00000004353	KNOWN	protein_coding	CA5B	chromosome:C_jacchus3.2.1:X:1:142054208:1	13917366	13966583	D	Carbonic anhydrase 5B, mitochondrial {ECO:0000313|EMBL:JAB04734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007905}  [Source:UniProtKB/TrEMBL;Acc:F7A852]
ENSCJAG00000007377	NOVEL	protein_coding	ENSCJAG00000007377	chromosome:C_jacchus3.2.1:7:1:155834243:1	120289574	120309392	R	Uricase {ECO:0000256|RuleBase:RU004455}  [Source:UniProtKB/TrEMBL;Acc:F6XRI6]
ENSCJAG00000005888	KNOWN	protein_coding	CXCL14	chromosome:C_jacchus3.2.1:2:1:204313951:1	32394153	32402603	R	C-X-C motif chemokine 14 {ECO:0000313|EMBL:JAB20860.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010823}  [Source:UniProtKB/TrEMBL;Acc:F7HYY2]
ENSCJAG00000004393	KNOWN	protein_coding	AP1S2	chromosome:C_jacchus3.2.1:X:1:142054208:1	14002553	14032843	R	AP-1 complex subunit sigma-2 isoform 2 {ECO:0000313|EMBL:JAB10758.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007971}  [Source:UniProtKB/TrEMBL;Acc:F6Z8P1]
ENSCJAG00000007380	KNOWN_BY_PROJECTION	protein_coding	DNASE2B	chromosome:C_jacchus3.2.1:7:1:155834243:1	120323038	120339181	D	deoxyribonuclease II beta [Source:HGNC Symbol;Acc:HGNC:28875]
ENSCJAG00000004402	KNOWN_BY_PROJECTION	protein_coding	GRPR	chromosome:C_jacchus3.2.1:X:1:142054208:1	14300263	14332877	D	gastrin-releasing peptide receptor [Source:HGNC Symbol;Acc:HGNC:4609]
ENSCJAG00000004410	KNOWN_BY_PROJECTION	protein_coding	MAGEB17	chromosome:C_jacchus3.2.1:X:1:142054208:1	14348218	14354747	D	melanoma antigen family B, 17 [Source:HGNC Symbol;Acc:HGNC:17418]
ENSCJAG00000014961	NOVEL	protein_coding	ENSCJAG00000014961	chromosome:C_jacchus3.2.1:5:1:159171411:1	88613909	88648647	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027635}  [Source:UniProtKB/TrEMBL;Acc:F7GUE5]
ENSCJAG00000004412	NOVEL	protein_coding	ENSCJAG00000004412	chromosome:C_jacchus3.2.1:X:1:142054208:1	14380325	14381492	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052058}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ1]
ENSCJAG00000007024	KNOWN	protein_coding	FAM84A	chromosome:C_jacchus3.2.1:14:1:108792865:1	93965248	93968788	R	Protein FAM84A {ECO:0000313|EMBL:JAB05317.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013024}  [Source:UniProtKB/TrEMBL;Acc:F7B2K5]
ENSCJAG00000004420	NOVEL	protein_coding	ENSCJAG00000004420	chromosome:C_jacchus3.2.1:X:1:142054208:1	14679580	14680530	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008001}  [Source:UniProtKB/TrEMBL;Acc:F7AAK6]
ENSCJAG00000007012	KNOWN	protein_coding	TRIB2	chromosome:C_jacchus3.2.1:14:1:108792865:1	95813102	95836609	R	Tribbles homolog 2 {ECO:0000313|EMBL:JAB10532.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013009}  [Source:UniProtKB/TrEMBL;Acc:F7B3N5]
ENSCJAG00000005904	KNOWN_BY_PROJECTION	protein_coding	SLC25A48	chromosome:C_jacchus3.2.1:2:1:204313951:1	32608518	32661877	D	solute carrier family 25, member 48 [Source:HGNC Symbol;Acc:HGNC:30451]
ENSCJAG00000007397	NOVEL	pseudogene	ENSCJAG00000007397	chromosome:C_jacchus3.2.1:7:1:155834243:1	120385751	120386287	D	<no descrition>
ENSCJAG00000007400	KNOWN	protein_coding	RPF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	120400488	120418827	D	Ribosome production factor 1 {ECO:0000313|EMBL:JAB05239.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013804}  [Source:UniProtKB/TrEMBL;Acc:F7CAZ0]
ENSCJAG00000009791	KNOWN_BY_PROJECTION	protein_coding	ADAMTS13	chromosome:C_jacchus3.2.1:1:1:210400635:1	177534449	177572424	D	ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
ENSCJAG00000005916	KNOWN_BY_PROJECTION	protein_coding	IL9	chromosome:C_jacchus3.2.1:2:1:204313951:1	32665581	32669340	R	interleukin 9 [Source:HGNC Symbol;Acc:HGNC:6029]
ENSCJAG00000005920	KNOWN_BY_PROJECTION	protein_coding	FBXL21	chromosome:C_jacchus3.2.1:2:1:204313951:1	32713331	32718190	D	F-box and leucine-rich repeat protein 21 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:13600]
ENSCJAG00000005923	KNOWN_BY_PROJECTION	protein_coding	LECT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	32734419	32742818	R	leukocyte cell-derived chemotaxin 2 [Source:HGNC Symbol;Acc:HGNC:6550]
ENSCJAG00000007425	NOVEL	protein_coding	ENSCJAG00000007425	chromosome:C_jacchus3.2.1:7:1:155834243:1	120419491	120427682	R	<no descrition>
ENSCJAG00000002433	KNOWN_BY_PROJECTION	protein_coding	DBR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	38392804	38405757	D	debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]
ENSCJAG00000004421	KNOWN	protein_coding	CTPS2	chromosome:C_jacchus3.2.1:X:1:142054208:1	14749669	14868823	R	CTP synthase {ECO:0000256|RuleBase:RU810713}  [Source:UniProtKB/TrEMBL;Acc:F7CKK2]
ENSCJAG00000002444	KNOWN_BY_PROJECTION	protein_coding	A4GNT	chromosome:C_jacchus3.2.1:17:1:74750902:1	38441395	38450047	D	alpha-1,4-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:17968]
ENSCJAG00000006976	KNOWN_BY_PROJECTION	protein_coding	LPIN1	chromosome:C_jacchus3.2.1:14:1:108792865:1	96732355	96893081	R	lipin 1 [Source:HGNC Symbol;Acc:HGNC:13345]
ENSCJAG00000000877	NOVEL	protein_coding	ENSCJAG00000000877	chromosome:C_jacchus3.2.1:11:1:130397257:1	123432479	123434423	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001498}  [Source:UniProtKB/TrEMBL;Acc:F6VFQ8]
ENSCJAG00000002446	KNOWN_BY_PROJECTION	protein_coding	DZIP1L	chromosome:C_jacchus3.2.1:17:1:74750902:1	38458150	38508153	D	DAZ interacting zinc finger protein 1-like [Source:HGNC Symbol;Acc:HGNC:26551]
ENSCJAG00000000836	NOVEL	protein_coding	ENSCJAG00000000836	chromosome:C_jacchus3.2.1:11:1:130397257:1	123434730	123438207	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001428}  [Source:UniProtKB/TrEMBL;Acc:F6X7D4]
ENSCJAG00000005930	KNOWN_BY_PROJECTION	protein_coding	TGFBI	chromosome:C_jacchus3.2.1:2:1:204313951:1	32819874	32854435	D	transforming growth factor, beta-induced, 68kDa [Source:HGNC Symbol;Acc:HGNC:11771]
ENSCJAG00000000827	KNOWN_BY_PROJECTION	protein_coding	NUDT8	chromosome:C_jacchus3.2.1:11:1:130397257:1	123441835	123443860	R	nudix (nucleoside diphosphate linked moiety X)-type motif 8 [Source:HGNC Symbol;Acc:HGNC:8055]
ENSCJAG00000000826	KNOWN	protein_coding	TBX10	chromosome:C_jacchus3.2.1:11:1:130397257:1	123445192	123446681	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001405}  [Source:UniProtKB/TrEMBL;Acc:F6XUI8]
ENSCJAG00000003697	KNOWN_BY_PROJECTION	protein_coding	ALDH3B2	chromosome:C_jacchus3.2.1:11:1:130397257:1	123450401	123451930	R	aldehyde dehydrogenase 3 family, member B2 [Source:HGNC Symbol;Acc:HGNC:411]
ENSCJAG00000002453	KNOWN_BY_PROJECTION	protein_coding	CLDN18	chromosome:C_jacchus3.2.1:17:1:74750902:1	38536978	38568833	R	claudin 18 [Source:HGNC Symbol;Acc:HGNC:2039]
ENSCJAG00000015652	KNOWN_BY_PROJECTION	protein_coding	UNC93B1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123497410	123510312	R	unc-93 homolog B1 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:13481]
ENSCJAG00000018513	KNOWN	protein_coding	SORCS3	chromosome:C_jacchus3.2.1:12:1:121768101:1	92154677	92771984	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034371}; VPS10 domain-containing receptor SorCS3 {ECO:0000313|EMBL:JAB15506.1}  [Source:UniProtKB/TrEMBL;Acc:F6WZE4]
ENSCJAG00000002455	KNOWN	protein_coding	IL20RB	chromosome:C_jacchus3.2.1:17:1:74750902:1	39494311	39542611	R	Interleukin-20 receptor subunit beta {ECO:0000313|EMBL:JAB05775.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004502}  [Source:UniProtKB/TrEMBL;Acc:F6UG47]
ENSCJAG00000006958	KNOWN_BY_PROJECTION	protein_coding	NTSR2	chromosome:C_jacchus3.2.1:14:1:108792865:1	96911097	96921037	D	neurotensin receptor 2 [Source:HGNC Symbol;Acc:HGNC:8040]
ENSCJAG00000014956	KNOWN_BY_PROJECTION	protein_coding	MMP28	chromosome:C_jacchus3.2.1:5:1:159171411:1	88660775	88689148	D	matrix metallopeptidase 28 [Source:HGNC Symbol;Acc:HGNC:14366]
ENSCJAG00000022796	KNOWN	protein_coding	DCAF16	chromosome:C_jacchus3.2.1:3:1:190850796:1	173506513	173508490	D	DDB1-and CUL4-associated factor 16 {ECO:0000313|EMBL:JAB03924.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041379}  [Source:UniProtKB/TrEMBL;Acc:F7ENH7]
ENSCJAG00000012722	KNOWN_BY_PROJECTION	protein_coding	FAM184B	chromosome:C_jacchus3.2.1:3:1:190850796:1	173529240	173674147	D	family with sequence similarity 184, member B [Source:HGNC Symbol;Acc:HGNC:29235]
ENSCJAG00000007432	NOVEL	protein_coding	ENSCJAG00000007432	chromosome:C_jacchus3.2.1:7:1:155834243:1	120435667	120489007	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013833}  [Source:UniProtKB/TrEMBL;Acc:F7BVU6]
ENSCJAG00000009854	KNOWN	protein_coding	CACFD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	177574125	177750887	D	Calcium channel flower homolog isoform a {ECO:0000313|EMBL:JAB03513.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050147}  [Source:UniProtKB/TrEMBL;Acc:F7H4B8]
ENSCJAG00000002476	KNOWN	protein_coding	NCK1	chromosome:C_jacchus3.2.1:17:1:74750902:1	39551196	39644866	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004536}  [Source:UniProtKB/TrEMBL;Acc:F7CJT2]
ENSCJAG00000006946	KNOWN_BY_PROJECTION	protein_coding	GREB1	chromosome:C_jacchus3.2.1:14:1:108792865:1	96935953	97039190	R	growth regulation by estrogen in breast cancer 1 [Source:HGNC Symbol;Acc:HGNC:24885]
ENSCJAG00000002492	KNOWN	protein_coding	SLC35G2	chromosome:C_jacchus3.2.1:17:1:74750902:1	39654235	39685619	R	Solute carrier family 35 member G2 {ECO:0000313|EMBL:JAB15391.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004543}  [Source:UniProtKB/TrEMBL;Acc:F7C511]
ENSCJAG00000012711	KNOWN	protein_coding	MED28	chromosome:C_jacchus3.2.1:3:1:190850796:1	173681453	173690888	R	Mediator of RNA polymerase II transcription subunit 28 {ECO:0000313|EMBL:JAB06603.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023291}  [Source:UniProtKB/TrEMBL;Acc:F7IFZ0]
ENSCJAG00000034883	NOVEL	pseudogene	ENSCJAG00000034883	chromosome:C_jacchus3.2.1:12:1:121768101:1	93193542	93194014	R	<no descrition>
ENSCJAG00000033837	KNOWN_BY_PROJECTION	protein_coding	SLC2A6	chromosome:C_jacchus3.2.1:1:1:210400635:1	177585027	177593601	R	solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
ENSCJAG00000007444	KNOWN	protein_coding	CTBS	chromosome:C_jacchus3.2.1:7:1:155834243:1	120476048	120499878	R	Di-N-acetylchitobiase {ECO:0000313|EMBL:JAB08484.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013848}  [Source:UniProtKB/TrEMBL;Acc:F7BEM0]
ENSCJAG00000008788	KNOWN_BY_PROJECTION	protein_coding	TRAV18	chromosome:C_jacchus3.2.1:10:1:132174527:1	46054845	46055345	D	T cell receptor alpha variable 18 [Source:HGNC Symbol;Acc:HGNC:12114]
ENSCJAG00000008782	KNOWN_BY_PROJECTION	protein_coding	TRAV19	chromosome:C_jacchus3.2.1:10:1:132174527:1	46057960	46058579	D	T cell receptor alpha variable 19 [Source:HGNC Symbol;Acc:HGNC:12115]
ENSCJAG00000032238	KNOWN_BY_PROJECTION	protein_coding	TRAV22	chromosome:C_jacchus3.2.1:10:1:132174527:1	46124021	46124535	D	T cell receptor alpha variable 22 [Source:HGNC Symbol;Acc:HGNC:12119]
ENSCJAG00000018526	KNOWN_BY_PROJECTION	protein_coding	SORCS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	94092384	94306155	R	sortilin-related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
ENSCJAG00000008776	KNOWN_BY_PROJECTION	protein_coding	TRAV23DV6	chromosome:C_jacchus3.2.1:10:1:132174527:1	46136188	46136735	D	T cell receptor alpha variable 23/delta variable 6 [Source:HGNC Symbol;Acc:HGNC:12120]
ENSCJAG00000009952	KNOWN_BY_PROJECTION	protein_coding	TMEM8C	chromosome:C_jacchus3.2.1:1:1:210400635:1	177629907	177642073	R	transmembrane protein 8C [Source:HGNC Symbol;Acc:HGNC:33778]
ENSCJAG00000015676	NOVEL	protein_coding	ENSCJAG00000015676	chromosome:C_jacchus3.2.1:11:1:130397257:1	123522170	123536623	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028868}  [Source:UniProtKB/TrEMBL;Acc:F6W5S2]
ENSCJAG00000007456	KNOWN_BY_PROJECTION	protein_coding	SSX2IP	chromosome:C_jacchus3.2.1:7:1:155834243:1	120575140	120606477	R	synovial sarcoma, X breakpoint 2 interacting protein [Source:HGNC Symbol;Acc:HGNC:16509]
ENSCJAG00000012680	KNOWN	protein_coding	LAP3	chromosome:C_jacchus3.2.1:3:1:190850796:1	173697354	173725012	R	Cytosol aminopeptidase {ECO:0000313|EMBL:JAB10607.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023276}  [Source:UniProtKB/TrEMBL;Acc:F7IIB5]
ENSCJAG00000009961	NOVEL	protein_coding	ENSCJAG00000009961	chromosome:C_jacchus3.2.1:1:1:210400635:1	177656559	177692048	D	<no descrition>
ENSCJAG00000002501	KNOWN	protein_coding	STAG1	chromosome:C_jacchus3.2.1:17:1:74750902:1	39757302	40199698	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004709}  [Source:UniProtKB/TrEMBL;Acc:F7C2Y0]
ENSCJAG00000006910	KNOWN	protein_coding	E2F6	chromosome:C_jacchus3.2.1:14:1:108792865:1	97117483	97138412	D	Transcription factor E2F6 {ECO:0000313|EMBL:JAB10514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012828}  [Source:UniProtKB/TrEMBL;Acc:F6PNG3]
ENSCJAG00000015686	KNOWN	protein_coding	ENSCJAG00000015686	chromosome:C_jacchus3.2.1:11:1:130397257:1	123539210	123544475	D	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial {ECO:0000313|EMBL:JAB52516.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028894}  [Source:UniProtKB/TrEMBL;Acc:F6W4Z4]
ENSCJAG00000006843	KNOWN_BY_PROJECTION	protein_coding	MCOLN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	120809139	120886776	R	mucolipin 2 [Source:HGNC Symbol;Acc:HGNC:13357]
ENSCJAG00000009993	KNOWN	protein_coding	FAM163B	chromosome:C_jacchus3.2.1:1:1:210400635:1	177696479	177697767	R	Protein FAM163B {ECO:0000313|EMBL:JAB21987.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018359}  [Source:UniProtKB/TrEMBL;Acc:F7DIS2]
ENSCJAG00000009999	KNOWN_BY_PROJECTION	protein_coding	DBH	chromosome:C_jacchus3.2.1:1:1:210400635:1	177753634	177776476	D	dopamine beta-hydroxylase (dopamine beta-monooxygenase) [Source:HGNC Symbol;Acc:HGNC:2689]
ENSCJAG00000005963	NOVEL	protein_coding	ENSCJAG00000005963	chromosome:C_jacchus3.2.1:2:1:204313951:1	32923199	32928636	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010956}  [Source:UniProtKB/TrEMBL;Acc:F7IFA9]
ENSCJAG00000011876	KNOWN_BY_PROJECTION	protein_coding	BRAP	chromosome:C_jacchus3.2.1:9:1:124281992:1	101813193	101861878	R	BRCA1 associated protein [Source:HGNC Symbol;Acc:HGNC:1099]
ENSCJAG00000005968	KNOWN_BY_PROJECTION	protein_coding	SMAD5	chromosome:C_jacchus3.2.1:2:1:204313951:1	32945448	32965560	D	SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]
ENSCJAG00000005981	NOVEL	protein_coding	ENSCJAG00000005981	chromosome:C_jacchus3.2.1:2:1:204313951:1	32980975	32981445	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010987}  [Source:UniProtKB/TrEMBL;Acc:F7IAJ3]
ENSCJAG00000015705	KNOWN_BY_PROJECTION	protein_coding	TCIRG1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123547793	123559966	D	T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
ENSCJAG00000008769	KNOWN_BY_PROJECTION	protein_coding	TRAV24	chromosome:C_jacchus3.2.1:10:1:132174527:1	46154787	46156325	D	T cell receptor alpha variable 24 [Source:HGNC Symbol;Acc:HGNC:12121]
ENSCJAG00000008766	KNOWN_BY_PROJECTION	protein_coding	TRAV25	chromosome:C_jacchus3.2.1:10:1:132174527:1	46160107	46160793	D	T cell receptor alpha variable 25 [Source:HGNC Symbol;Acc:HGNC:12122]
ENSCJAG00000008753	KNOWN_BY_PROJECTION	protein_coding	TRAV29DV5	chromosome:C_jacchus3.2.1:10:1:132174527:1	46233845	46234481	D	T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12127]
ENSCJAG00000008711	KNOWN	protein_coding	DAD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	46630302	46652850	R	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 {ECO:0000256|RuleBase:RU361136}  [Source:UniProtKB/TrEMBL;Acc:F6Y7S0]
ENSCJAG00000014952	KNOWN_BY_PROJECTION	protein_coding	C17orf50	chromosome:C_jacchus3.2.1:5:1:159171411:1	88689953	88694403	R	chromosome 17 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:29581]
ENSCJAG00000014949	NOVEL	pseudogene	ENSCJAG00000014949	chromosome:C_jacchus3.2.1:5:1:159171411:1	88708933	88709514	R	<no descrition>
ENSCJAG00000035324	NOVEL	protein_coding	ENSCJAG00000035324	chromosome:C_jacchus3.2.1:5:1:159171411:1	88718674	88719205	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043217}  [Source:UniProtKB/TrEMBL;Acc:F7ICR7]
ENSCJAG00000008681	KNOWN_BY_PROJECTION	protein_coding	ABHD4	chromosome:C_jacchus3.2.1:10:1:132174527:1	46662662	46676766	D	abhydrolase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:20154]
ENSCJAG00000014946	NOVEL	protein_coding	ENSCJAG00000014946	chromosome:C_jacchus3.2.1:5:1:159171411:1	88895169	88897282	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052405}  [Source:UniProtKB/TrEMBL;Acc:F7IBX7]
ENSCJAG00000016085	NOVEL	protein_coding	ENSCJAG00000016085	chromosome:C_jacchus3.2.1:12:1:121768101:1	97330741	97331182	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029605}  [Source:UniProtKB/TrEMBL;Acc:F7I0H7]
ENSCJAG00000014938	KNOWN_BY_PROJECTION	protein_coding	GAS2L2	chromosome:C_jacchus3.2.1:5:1:159171411:1	88934495	88942699	D	growth arrest-specific 2 like 2 [Source:HGNC Symbol;Acc:HGNC:24846]
ENSCJAG00000014936	KNOWN	protein_coding	RASL10B	chromosome:C_jacchus3.2.1:5:1:159171411:1	88944018	88955920	R	Ras-like protein family member 10B {ECO:0000313|EMBL:JAB02554.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027502}  [Source:UniProtKB/TrEMBL;Acc:F7EM54]
ENSCJAG00000008678	KNOWN_BY_PROJECTION	protein_coding	OR6J1	chromosome:C_jacchus3.2.1:10:1:132174527:1	46695151	46696766	R	olfactory receptor, family 6, subfamily J, member 1 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:14707]
ENSCJAG00000008676	NOVEL	pseudogene	ENSCJAG00000008676	chromosome:C_jacchus3.2.1:10:1:132174527:1	46761123	46762066	D	<no descrition>
ENSCJAG00000018543	KNOWN_BY_PROJECTION	protein_coding	XPNPEP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	97373528	97418268	R	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble [Source:HGNC Symbol;Acc:HGNC:12822]
ENSCJAG00000008664	KNOWN_BY_PROJECTION	protein_coding	OXA1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	46815908	46824150	D	oxidase (cytochrome c) assembly 1-like [Source:HGNC Symbol;Acc:HGNC:8526]
ENSCJAG00000004457	KNOWN_BY_PROJECTION	protein_coding	S100G	chromosome:C_jacchus3.2.1:X:1:142054208:1	14807244	14810937	D	S100 calcium binding protein G [Source:HGNC Symbol;Acc:HGNC:1436]
ENSCJAG00000005983	KNOWN_BY_PROJECTION	protein_coding	TRPC7	chromosome:C_jacchus3.2.1:2:1:204313951:1	33004700	33146110	R	transient receptor potential cation channel, subfamily C, member 7 [Source:HGNC Symbol;Acc:HGNC:20754]
ENSCJAG00000004462	KNOWN	protein_coding	SYAP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	14875915	14908589	D	Synapse-associated protein 1 {ECO:0000313|EMBL:JAB03625.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008150}  [Source:UniProtKB/TrEMBL;Acc:F7HNG2]
ENSCJAG00000008592	KNOWN_BY_PROJECTION	protein_coding	SLC7A7	chromosome:C_jacchus3.2.1:10:1:132174527:1	46826807	46872509	R	solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 [Source:HGNC Symbol;Acc:HGNC:11065]
ENSCJAG00000014853	KNOWN_BY_PROJECTION	protein_coding	AP2B1	chromosome:C_jacchus3.2.1:5:1:159171411:1	88960803	89094255	R	adaptor-related protein complex 2, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:563]
ENSCJAG00000012671	KNOWN_BY_PROJECTION	protein_coding	CLRN2	chromosome:C_jacchus3.2.1:3:1:190850796:1	173761528	173774673	R	clarin 2 [Source:HGNC Symbol;Acc:HGNC:33939]
ENSCJAG00000032197	NOVEL	pseudogene	ENSCJAG00000032197	chromosome:C_jacchus3.2.1:14:1:108792865:1	97158184	97159085	R	<no descrition>
ENSCJAG00000006897	NOVEL	pseudogene	ENSCJAG00000006897	chromosome:C_jacchus3.2.1:14:1:108792865:1	97241781	97242282	R	<no descrition>
ENSCJAG00000035130	NOVEL	protein_coding	ENSCJAG00000035130	chromosome:C_jacchus3.2.1:14:1:108792865:1	97248702	97248975	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050088}  [Source:UniProtKB/TrEMBL;Acc:F7F0B0]
ENSCJAG00000012653	KNOWN_BY_PROJECTION	protein_coding	QDPR	chromosome:C_jacchus3.2.1:3:1:190850796:1	173780519	173810136	D	quinoid dihydropteridine reductase [Source:HGNC Symbol;Acc:HGNC:9752]
ENSCJAG00000009864	KNOWN	protein_coding	SARDH	chromosome:C_jacchus3.2.1:1:1:210400635:1	177781127	177857154	R	Sarcosine dehydrogenase, mitochondrial {ECO:0000313|EMBL:JAB22090.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018230}  [Source:UniProtKB/TrEMBL;Acc:F7GW31]
ENSCJAG00000014844	KNOWN	protein_coding	PEX12	chromosome:C_jacchus3.2.1:5:1:159171411:1	89103336	89109506	D	Peroxisome assembly protein 12 {ECO:0000313|EMBL:JAB08296.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027342}  [Source:UniProtKB/TrEMBL;Acc:F7DDX6]
ENSCJAG00000002606	NOVEL	protein_coding	ENSCJAG00000002606	chromosome:C_jacchus3.2.1:17:1:74750902:1	39837998	39839089	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004726}  [Source:UniProtKB/TrEMBL;Acc:F7BNA8]
ENSCJAG00000006859	KNOWN	protein_coding	MCOLN3	chromosome:C_jacchus3.2.1:7:1:155834243:1	120905279	120933296	R	Mucolipin-3 isoform 1 {ECO:0000313|EMBL:JAB18777.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012762}  [Source:UniProtKB/TrEMBL;Acc:F6RG56]
ENSCJAG00000006805	KNOWN	protein_coding	ROCK2	chromosome:C_jacchus3.2.1:14:1:108792865:1	97249683	97404939	D	Rho-associated protein kinase {ECO:0000256|PIRNR:PIRNR037568}  [Source:UniProtKB/TrEMBL;Acc:F7INQ2]
ENSCJAG00000018560	KNOWN	protein_coding	ADD3	chromosome:C_jacchus3.2.1:12:1:121768101:1	97522103	97652580	D	Gamma-adducin isoform a {ECO:0000313|EMBL:JAB11408.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034561}  [Source:UniProtKB/TrEMBL;Acc:F7I3U9]
ENSCJAG00000002613	KNOWN	protein_coding	PCCB	chromosome:C_jacchus3.2.1:17:1:74750902:1	40202417	40283431	R	Propionyl-CoA carboxylase beta chain, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB06302.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004784}  [Source:UniProtKB/TrEMBL;Acc:F7ALB9]
ENSCJAG00000006895	KNOWN	protein_coding	WDR63	chromosome:C_jacchus3.2.1:7:1:155834243:1	120950506	121035264	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012927}; WD repeat-containing protein 63 {ECO:0000313|EMBL:JAB18207.1}  [Source:UniProtKB/TrEMBL;Acc:F6S157]
ENSCJAG00000035615	KNOWN_BY_PROJECTION	protein_coding	MRPL52	chromosome:C_jacchus3.2.1:10:1:132174527:1	46886738	46892505	D	mitochondrial ribosomal protein L52 [Source:HGNC Symbol;Acc:HGNC:16655]
ENSCJAG00000008538	KNOWN	protein_coding	MMP14	chromosome:C_jacchus3.2.1:10:1:132174527:1	46892492	46904982	D	Matrix metalloproteinase-14 preproprotein {ECO:0000313|EMBL:JAB03651.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015785}  [Source:UniProtKB/TrEMBL;Acc:F7DBK0]
ENSCJAG00000006070	KNOWN	protein_coding	SPOCK1	chromosome:C_jacchus3.2.1:2:1:204313951:1	33753944	34294454	R	Testican-1 {ECO:0000313|EMBL:JAB33814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011153}  [Source:UniProtKB/TrEMBL;Acc:F7I1V8]
ENSCJAG00000015722	KNOWN	protein_coding	CHKA	chromosome:C_jacchus3.2.1:11:1:130397257:1	123563679	123611408	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028947}  [Source:UniProtKB/TrEMBL;Acc:F7C249]
ENSCJAG00000006986	NOVEL	protein_coding	ENSCJAG00000006986	chromosome:C_jacchus3.2.1:7:1:155834243:1	120984500	120985933	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012962}  [Source:UniProtKB/TrEMBL;Acc:F6RDL0]
ENSCJAG00000015727	KNOWN_BY_PROJECTION	protein_coding	SUV420H1	chromosome:C_jacchus3.2.1:11:1:130397257:1	123680290	123715525	R	suppressor of variegation 4-20 homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:24283]
ENSCJAG00000014840	KNOWN_BY_PROJECTION	protein_coding	SLFN14	chromosome:C_jacchus3.2.1:5:1:159171411:1	89123724	89133475	D	schlafen family member 14 [Source:HGNC Symbol;Acc:HGNC:32689]
ENSCJAG00000006075	KNOWN_BY_PROJECTION	protein_coding	KLHL3	chromosome:C_jacchus3.2.1:2:1:204313951:1	34459844	34561802	R	kelch-like family member 3 [Source:HGNC Symbol;Acc:HGNC:6354]
ENSCJAG00000015749	KNOWN_BY_PROJECTION	protein_coding	C11orf24	chromosome:C_jacchus3.2.1:11:1:130397257:1	123789801	123791856	R	chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]
ENSCJAG00000014834	KNOWN_BY_PROJECTION	protein_coding	SLFN11	chromosome:C_jacchus3.2.1:5:1:159171411:1	89179016	89187974	D	schlafen family member 11 [Source:HGNC Symbol;Acc:HGNC:26633]
ENSCJAG00000008522	KNOWN_BY_PROJECTION	protein_coding	LRP10	chromosome:C_jacchus3.2.1:10:1:132174527:1	46926806	46934007	D	low density lipoprotein receptor-related protein 10 [Source:HGNC Symbol;Acc:HGNC:14553]
ENSCJAG00000014828	KNOWN_BY_PROJECTION	protein_coding	SLFN5	chromosome:C_jacchus3.2.1:5:1:159171411:1	89214551	89222552	R	schlafen family member 5 [Source:HGNC Symbol;Acc:HGNC:28286]
ENSCJAG00000007003	KNOWN_BY_PROJECTION	protein_coding	SYDE2	chromosome:C_jacchus3.2.1:7:1:155834243:1	121060709	121109586	R	synapse defective 1, Rho GTPase, homolog 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:25841]
ENSCJAG00000020954	NOVEL	protein_coding	ENSCJAG00000020954	chromosome:C_jacchus3.2.1:14:1:108792865:1	97320464	97320913	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051590}  [Source:UniProtKB/TrEMBL;Acc:F6UAH5]
ENSCJAG00000006801	KNOWN_BY_PROJECTION	protein_coding	PQLC3	chromosome:C_jacchus3.2.1:14:1:108792865:1	97409064	97428246	R	PQ loop repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:28503]
ENSCJAG00000011944	KNOWN_BY_PROJECTION	protein_coding	ACAD10	chromosome:C_jacchus3.2.1:9:1:124281992:1	101861948	101934971	D	acyl-CoA dehydrogenase family, member 10 [Source:HGNC Symbol;Acc:HGNC:21597]
ENSCJAG00000006799	KNOWN	protein_coding	C2ORF50	chromosome:C_jacchus3.2.1:14:1:108792865:1	97439451	97449974	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012583}; Uncharacterized protein C2orf50 {ECO:0000313|EMBL:JAB12197.1}  [Source:UniProtKB/TrEMBL;Acc:F7GD05]
ENSCJAG00000034691	NOVEL	pseudogene	ENSCJAG00000034691	chromosome:C_jacchus3.2.1:14:1:108792865:1	97687965	97688067	R	<no descrition>
ENSCJAG00000034997	NOVEL	protein_coding	ENSCJAG00000034997	chromosome:C_jacchus3.2.1:7:1:155834243:1	121132141	121133892	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050556}  [Source:UniProtKB/TrEMBL;Acc:F7EIG8]
ENSCJAG00000007022	KNOWN	protein_coding	C1ORF52	chromosome:C_jacchus3.2.1:7:1:155834243:1	121160756	121168873	R	UPF0690 protein C1orf52 {ECO:0000313|EMBL:JAB15956.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013035}  [Source:UniProtKB/TrEMBL;Acc:F7AJW6]
ENSCJAG00000006694	KNOWN	protein_coding	PDIA6	chromosome:C_jacchus3.2.1:14:1:108792865:1	97712533	97776961	D	Protein disulfide-isomerase A6 {ECO:0000313|EMBL:JAB07589.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049289}  [Source:UniProtKB/TrEMBL;Acc:F6U9X3]
ENSCJAG00000015736	KNOWN_BY_PROJECTION	protein_coding	LRP5	chromosome:C_jacchus3.2.1:11:1:130397257:1	123840117	123983745	D	low density lipoprotein receptor-related protein 5 [Source:HGNC Symbol;Acc:HGNC:6697]
ENSCJAG00000006112	KNOWN_BY_PROJECTION	protein_coding	HNRNPA0	chromosome:C_jacchus3.2.1:2:1:204313951:1	34599270	34600564	R	heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]
ENSCJAG00000014785	KNOWN	protein_coding	UNC45B	chromosome:C_jacchus3.2.1:5:1:159171411:1	89266187	89305256	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045093}  [Source:UniProtKB/TrEMBL;Acc:F6T803]
ENSCJAG00000007039	KNOWN	protein_coding	BCL10	chromosome:C_jacchus3.2.1:7:1:155834243:1	121177361	121185105	R	B-cell lymphoma/leukemia 10 {ECO:0000313|EMBL:JAB03770.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046194}  [Source:UniProtKB/TrEMBL;Acc:F6VAH1]
ENSCJAG00000006125	NOVEL	protein_coding	ENSCJAG00000006125	chromosome:C_jacchus3.2.1:2:1:204313951:1	34634395	34635493	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011247}  [Source:UniProtKB/TrEMBL;Acc:F7IQD0]
ENSCJAG00000006127	NOVEL	pseudogene	ENSCJAG00000006127	chromosome:C_jacchus3.2.1:2:1:204313951:1	34708211	34708945	D	<no descrition>
ENSCJAG00000004503	KNOWN_BY_PROJECTION	protein_coding	TXLNG	chromosome:C_jacchus3.2.1:X:1:142054208:1	14930900	14988297	D	taxilin gamma [Source:HGNC Symbol;Acc:HGNC:18578]
ENSCJAG00000006131	NOVEL	pseudogene	ENSCJAG00000006131	chromosome:C_jacchus3.2.1:2:1:204313951:1	34725165	34726572	D	<no descrition>
ENSCJAG00000013723	NOVEL	pseudogene	ENSCJAG00000013723	chromosome:C_jacchus3.2.1:3:1:190850796:1	173887478	173887946	D	<no descrition>
ENSCJAG00000035225	NOVEL	pseudogene	ENSCJAG00000035225	chromosome:C_jacchus3.2.1:3:1:190850796:1	174398223	174398989	D	<no descrition>
ENSCJAG00000006134	KNOWN_BY_PROJECTION	protein_coding	MYOT	chromosome:C_jacchus3.2.1:2:1:204313951:1	34735869	34758323	D	myotilin [Source:HGNC Symbol;Acc:HGNC:12399]
ENSCJAG00000014757	KNOWN	protein_coding	NLE1	chromosome:C_jacchus3.2.1:5:1:159171411:1	89311062	89321800	D	Notchless protein homolog 1 isoform a {ECO:0000313|EMBL:JAB36812.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027223}  [Source:UniProtKB/TrEMBL;Acc:F7GHQ8]
ENSCJAG00000012590	KNOWN_BY_PROJECTION	protein_coding	LDB2	chromosome:C_jacchus3.2.1:3:1:190850796:1	174428921	174836656	D	LIM domain binding 2 [Source:HGNC Symbol;Acc:HGNC:6533]
ENSCJAG00000008482	KNOWN	protein_coding	RBM23	chromosome:C_jacchus3.2.1:10:1:132174527:1	46932841	46978939	R	Putative RNA-binding protein 23 isoform 1 {ECO:0000313|EMBL:JAB09495.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015676}  [Source:UniProtKB/TrEMBL;Acc:F7GP46]
ENSCJAG00000007011	KNOWN	protein_coding	DDAH1	chromosome:C_jacchus3.2.1:7:1:155834243:1	121219838	121413957	R	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 isoform 1 {ECO:0000313|EMBL:JAB04674.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048888}  [Source:UniProtKB/TrEMBL;Acc:F6SCR1]
ENSCJAG00000002644	KNOWN	protein_coding	MSL2	chromosome:C_jacchus3.2.1:17:1:74750902:1	40327924	40367144	D	Male-specific lethal 2 homolog isoform 1 {ECO:0000313|EMBL:JAB07957.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004789}  [Source:UniProtKB/TrEMBL;Acc:F7AL90]
ENSCJAG00000006165	KNOWN_BY_PROJECTION	protein_coding	PKD2L2	chromosome:C_jacchus3.2.1:2:1:204313951:1	34759995	34806282	D	polycystic kidney disease 2-like 2 [Source:HGNC Symbol;Acc:HGNC:9012]
ENSCJAG00000004545	KNOWN	protein_coding	RBBP7	chromosome:C_jacchus3.2.1:X:1:142054208:1	14988458	15013504	R	Histone-binding protein RBBP7 isoform 2 {ECO:0000313|EMBL:JAB08543.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008329}  [Source:UniProtKB/TrEMBL;Acc:F7HWQ2]
ENSCJAG00000007041	KNOWN_BY_PROJECTION	protein_coding	ZNHIT6	chromosome:C_jacchus3.2.1:7:1:155834243:1	121556947	121613626	R	zinc finger, HIT-type containing 6 [Source:HGNC Symbol;Acc:HGNC:26089]
ENSCJAG00000002646	KNOWN	protein_coding	PPP2R3A	chromosome:C_jacchus3.2.1:17:1:74750902:1	40369542	40543831	R	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform 1 {ECO:0000313|EMBL:JAB08102.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004857}  [Source:UniProtKB/TrEMBL;Acc:F6Y031]
ENSCJAG00000006660	KNOWN	protein_coding	ATP6V1C2	chromosome:C_jacchus3.2.1:14:1:108792865:1	97775276	97839112	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012359}; V-type proton ATPase subunit C 2 isoform b {ECO:0000313|EMBL:JAB07590.1}  [Source:UniProtKB/TrEMBL;Acc:F7H8R0]
ENSCJAG00000011989	NOVEL	protein_coding	ENSCJAG00000011989	chromosome:C_jacchus3.2.1:9:1:124281992:1	101943522	101987029	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022057}  [Source:UniProtKB/TrEMBL;Acc:F7ATY6]
ENSCJAG00000012588	NOVEL	pseudogene	ENSCJAG00000012588	chromosome:C_jacchus3.2.1:3:1:190850796:1	175110655	175111447	R	<no descrition>
ENSCJAG00000014751	KNOWN_BY_PROJECTION	protein_coding	FNDC8	chromosome:C_jacchus3.2.1:5:1:159171411:1	89322778	89332826	R	fibronectin type III domain containing 8 [Source:HGNC Symbol;Acc:HGNC:25286]
ENSCJAG00000014732	KNOWN_BY_PROJECTION	protein_coding	RAD51D	chromosome:C_jacchus3.2.1:5:1:159171411:1	89334923	89353539	D	RAD51 paralog D [Source:HGNC Symbol;Acc:HGNC:9823]
ENSCJAG00000006602	KNOWN	protein_coding	NOL10	chromosome:C_jacchus3.2.1:14:1:108792865:1	97873759	98002719	D	Nucleolar protein 10 isoform 1 {ECO:0000313|EMBL:JAB05648.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012276}  [Source:UniProtKB/TrEMBL;Acc:F7FQ53]
ENSCJAG00000012541	KNOWN	protein_coding	TAPT1	chromosome:C_jacchus3.2.1:3:1:190850796:1	175111808	175183455	D	Transmembrane anterior posterior transformation protein 1 homolog {ECO:0000313|EMBL:JAB12780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023032}  [Source:UniProtKB/TrEMBL;Acc:F7IG48]
ENSCJAG00000002678	NOVEL	pseudogene	ENSCJAG00000002678	chromosome:C_jacchus3.2.1:17:1:74750902:1	40591077	40591968	R	<no descrition>
ENSCJAG00000007060	KNOWN_BY_PROJECTION	protein_coding	COL24A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	121628094	122024736	R	collagen, type XXIV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:20821]
ENSCJAG00000006597	NOVEL	protein_coding	ENSCJAG00000006597	chromosome:C_jacchus3.2.1:14:1:108792865:1	98120889	98122166	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012179}  [Source:UniProtKB/TrEMBL;Acc:F7D9C9]
ENSCJAG00000006596	NOVEL	protein_coding	ENSCJAG00000006596	chromosome:C_jacchus3.2.1:14:1:108792865:1	98124986	98125287	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052426}  [Source:UniProtKB/TrEMBL;Acc:F7I789]
ENSCJAG00000018614	KNOWN	protein_coding	MXI1	chromosome:C_jacchus3.2.1:12:1:121768101:1	97723346	97800473	D	Max-interacting protein 1 isoform b {ECO:0000313|EMBL:JAB21857.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034593}  [Source:UniProtKB/TrEMBL;Acc:F7I1G6]
ENSCJAG00000015752	KNOWN_BY_PROJECTION	protein_coding	PPP6R3	chromosome:C_jacchus3.2.1:11:1:130397257:1	123996483	124149176	D	protein phosphatase 6, regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:1173]
ENSCJAG00000002682	KNOWN	protein_coding	EPHB1	chromosome:C_jacchus3.2.1:17:1:74750902:1	41221248	41668272	R	Ephrin type-B receptor 1 {ECO:0000313|EMBL:JAB14042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004973}  [Source:UniProtKB/TrEMBL;Acc:F7CGT7]
ENSCJAG00000012029	KNOWN	protein_coding	MAPKAPK5	chromosome:C_jacchus3.2.1:9:1:124281992:1	101996521	102031082	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022189}  [Source:UniProtKB/TrEMBL;Acc:F6WED0]
ENSCJAG00000006576	KNOWN	protein_coding	ODC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	98131851	98140064	D	Ornithine decarboxylase {ECO:0000313|EMBL:JAB07797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050811}  [Source:UniProtKB/TrEMBL;Acc:F7GMF7]
ENSCJAG00000004601	NOVEL	pseudogene	ENSCJAG00000004601	chromosome:C_jacchus3.2.1:X:1:142054208:1	15062285	15062941	D	<no descrition>
ENSCJAG00000014721	KNOWN_BY_PROJECTION	protein_coding	RFFL	chromosome:C_jacchus3.2.1:5:1:159171411:1	89367899	89453819	D	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:24821]
ENSCJAG00000004607	KNOWN_BY_PROJECTION	protein_coding	REPS2	chromosome:C_jacchus3.2.1:X:1:142054208:1	15136952	15358921	D	RALBP1 associated Eps domain containing 2 [Source:HGNC Symbol;Acc:HGNC:9963]
ENSCJAG00000014668	KNOWN_BY_PROJECTION	protein_coding	LIG3	chromosome:C_jacchus3.2.1:5:1:159171411:1	89459833	89484934	R	ligase III, DNA, ATP-dependent [Source:HGNC Symbol;Acc:HGNC:6600]
ENSCJAG00000018624	KNOWN	protein_coding	SMNDC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	97806288	97817989	R	Survival of motor neuron-related-splicing factor 30 {ECO:0000313|EMBL:JAB06552.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034639}  [Source:UniProtKB/TrEMBL;Acc:F7HMY9]
ENSCJAG00000018653	KNOWN_BY_PROJECTION	protein_coding	TLE6	chromosome:C_jacchus3.2.1:12:1:121768101:1	97949758	97957712	D	transducin-like enhancer of split 6 [Source:HGNC Symbol;Acc:HGNC:30788]
ENSCJAG00000014667	NOVEL	pseudogene	ENSCJAG00000014667	chromosome:C_jacchus3.2.1:5:1:159171411:1	89500290	89501405	R	<no descrition>
ENSCJAG00000014646	KNOWN_BY_PROJECTION	protein_coding	CCT6B	chromosome:C_jacchus3.2.1:5:1:159171411:1	89501608	89555012	D	chaperonin containing TCP1, subunit 6B (zeta 2) [Source:HGNC Symbol;Acc:HGNC:1621]
ENSCJAG00000002743	KNOWN_BY_PROJECTION	protein_coding	KY	chromosome:C_jacchus3.2.1:17:1:74750902:1	41813712	41868450	D	kyphoscoliosis peptidase [Source:HGNC Symbol;Acc:HGNC:26576]
ENSCJAG00000014663	NOVEL	protein_coding	ENSCJAG00000014663	chromosome:C_jacchus3.2.1:5:1:159171411:1	89511561	89512315	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026989}  [Source:UniProtKB/TrEMBL;Acc:F7IKU3]
ENSCJAG00000036394	NOVEL	pseudogene	ENSCJAG00000036394	chromosome:C_jacchus3.2.1:1:1:210400635:1	177878474	177879851	R	<no descrition>
ENSCJAG00000014632	KNOWN_BY_PROJECTION	protein_coding	TMEM132E	chromosome:C_jacchus3.2.1:5:1:159171411:1	89856477	89869329	R	transmembrane protein 132E [Source:HGNC Symbol;Acc:HGNC:26991]
ENSCJAG00000010024	KNOWN_BY_PROJECTION	protein_coding	VAV2	chromosome:C_jacchus3.2.1:1:1:210400635:1	177878970	178059630	R	vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
ENSCJAG00000006206	KNOWN	protein_coding	FAM13B	chromosome:C_jacchus3.2.1:2:1:204313951:1	34803837	34903008	R	Protein FAM13B isoform 1 {ECO:0000313|EMBL:JAB09150.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049393}  [Source:UniProtKB/TrEMBL;Acc:F6XUV0]
ENSCJAG00000010096	NOVEL	protein_coding	ENSCJAG00000010096	chromosome:C_jacchus3.2.1:1:1:210400635:1	178140828	178141226	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018545}  [Source:UniProtKB/TrEMBL;Acc:F7EBZ1]
ENSCJAG00000002753	KNOWN	protein_coding	CEP63	chromosome:C_jacchus3.2.1:17:1:74750902:1	41892424	41989257	R	Centrosomal protein of 63 kDa isoform a {ECO:0000313|EMBL:JAB07901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005030}  [Source:UniProtKB/TrEMBL;Acc:F7I115]
ENSCJAG00000010099	KNOWN	protein_coding	BRD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	178142220	178180485	R	Bromodomain-containing protein 3 {ECO:0000313|EMBL:JAB09543.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003948}  [Source:UniProtKB/TrEMBL;Acc:F7E7S5]
ENSCJAG00000012523	KNOWN_BY_PROJECTION	protein_coding	PROM1	chromosome:C_jacchus3.2.1:3:1:190850796:1	175269883	175377084	D	prominin 1 [Source:HGNC Symbol;Acc:HGNC:9454]
ENSCJAG00000014613	NOVEL	protein_coding	ENSCJAG00000014613	chromosome:C_jacchus3.2.1:5:1:159171411:1	89923055	89927329	D	<no descrition>
ENSCJAG00000006245	KNOWN_BY_PROJECTION	protein_coding	WNT8A	chromosome:C_jacchus3.2.1:2:1:204313951:1	34942217	34951272	D	wingless-type MMTV integration site family, member 8A [Source:HGNC Symbol;Acc:HGNC:12788]
ENSCJAG00000014604	KNOWN_BY_PROJECTION	protein_coding	CCL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	90147938	90150571	D	chemokine (C-C motif) ligand 1 [Source:HGNC Symbol;Acc:HGNC:10609]
ENSCJAG00000010123	KNOWN	protein_coding	WDR5	chromosome:C_jacchus3.2.1:1:1:210400635:1	178234470	178258299	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018651}; WD repeat-containing protein 5 {ECO:0000313|EMBL:JAB09298.1}  [Source:UniProtKB/TrEMBL;Acc:F7GQJ6]
ENSCJAG00000014600	KNOWN_BY_PROJECTION	protein_coding	CCL8	chromosome:C_jacchus3.2.1:5:1:159171411:1	90179915	90182270	R	chemokine (C-C motif) ligand 8 [Source:HGNC Symbol;Acc:HGNC:10635]
ENSCJAG00000014577	KNOWN	protein_coding	CCL11	chromosome:C_jacchus3.2.1:5:1:159171411:1	90213489	90248706	R	C-C motif chemokine {ECO:0000256|RuleBase:RU361150}  [Source:UniProtKB/TrEMBL;Acc:F7I909]
ENSCJAG00000010349	KNOWN_BY_PROJECTION	protein_coding	DST	chromosome:C_jacchus3.2.1:4:1:171630274:1	57838507	58349712	R	dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
ENSCJAG00000006262	KNOWN_BY_PROJECTION	protein_coding	NME5	chromosome:C_jacchus3.2.1:2:1:204313951:1	34978615	35005909	R	NME/NM23 family member 5 [Source:HGNC Symbol;Acc:HGNC:7853]
ENSCJAG00000014584	KNOWN_BY_PROJECTION	protein_coding	CCL7	chromosome:C_jacchus3.2.1:5:1:159171411:1	90232942	90234952	R	chemokine (C-C motif) ligand 7 [Source:HGNC Symbol;Acc:HGNC:10634]
ENSCJAG00000037241	KNOWN_BY_PROJECTION	protein_coding	CCL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	90246884	90248713	R	chemokine (C-C motif) ligand 2 [Source:HGNC Symbol;Acc:HGNC:10618]
ENSCJAG00000010148	KNOWN_BY_PROJECTION	protein_coding	RXRA	chromosome:C_jacchus3.2.1:1:1:210400635:1	178433484	178543455	D	retinoid X receptor, alpha [Source:HGNC Symbol;Acc:HGNC:10477]
ENSCJAG00000023361	NOVEL	pseudogene	ENSCJAG00000023361	chromosome:C_jacchus3.2.1:17:1:74750902:1	41924903	41925539	D	<no descrition>
ENSCJAG00000002775	NOVEL	protein_coding	ENSCJAG00000002775	chromosome:C_jacchus3.2.1:17:1:74750902:1	41956755	42084604	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046973}  [Source:UniProtKB/TrEMBL;Acc:F7I166]
ENSCJAG00000002777	KNOWN	protein_coding	ANAPC13	chromosome:C_jacchus3.2.1:17:1:74750902:1	41989386	41996875	D	Anaphase-promoting complex subunit 13 {ECO:0000313|EMBL:JAB07902.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005038}  [Source:UniProtKB/TrEMBL;Acc:F7I106]
ENSCJAG00000014568	KNOWN_BY_PROJECTION	protein_coding	ASIC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	91392989	91490495	D	acid sensing (proton gated) ion channel 2 [Source:HGNC Symbol;Acc:HGNC:99]
ENSCJAG00000002778	KNOWN	protein_coding	AMOTL2	chromosome:C_jacchus3.2.1:17:1:74750902:1	42095578	42115098	D	Angiomotin-like protein 2 {ECO:0000313|EMBL:JAB05763.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005064}  [Source:UniProtKB/TrEMBL;Acc:F7HWA8]
ENSCJAG00000014561	KNOWN_BY_PROJECTION	protein_coding	SPACA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	91503265	91509923	R	sperm acrosome associated 3 [Source:HGNC Symbol;Acc:HGNC:16260]
ENSCJAG00000012096	NOVEL	protein_coding	ENSCJAG00000012096	chromosome:C_jacchus3.2.1:9:1:124281992:1	102036816	102039480	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022197}  [Source:UniProtKB/TrEMBL;Acc:F6VVF3]
ENSCJAG00000010197	KNOWN_BY_PROJECTION	protein_coding	COL5A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	178737473	178952195	D	collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
ENSCJAG00000012100	KNOWN_BY_PROJECTION	protein_coding	TMEM116	chromosome:C_jacchus3.2.1:9:1:124281992:1	102173854	102276748	R	transmembrane protein 116 [Source:HGNC Symbol;Acc:HGNC:25084]
ENSCJAG00000014550	KNOWN	protein_coding	TMEM98	chromosome:C_jacchus3.2.1:5:1:159171411:1	91548382	91601949	R	Transmembrane protein 98 {ECO:0000313|EMBL:JAB13561.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051319}  [Source:UniProtKB/TrEMBL;Acc:F6ZJ86]
ENSCJAG00000015858	KNOWN	protein_coding	GAL	chromosome:C_jacchus3.2.1:11:1:130397257:1	124218063	124224388	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029196}  [Source:UniProtKB/TrEMBL;Acc:F7I381]
ENSCJAG00000015860	KNOWN_BY_PROJECTION	protein_coding	MTL5	chromosome:C_jacchus3.2.1:11:1:130397257:1	124244411	124286607	R	metallothionein-like 5, testis-specific (tesmin) [Source:HGNC Symbol;Acc:HGNC:7446]
ENSCJAG00000018666	KNOWN	protein_coding	TLE2	chromosome:C_jacchus3.2.1:12:1:121768101:1	97964123	97991185	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034754}  [Source:UniProtKB/TrEMBL;Acc:F7I602]
ENSCJAG00000002792	KNOWN_BY_PROJECTION	protein_coding	RYK	chromosome:C_jacchus3.2.1:17:1:74750902:1	42243058	42303768	D	receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:10481]
ENSCJAG00000032684	NOVEL	pseudogene	ENSCJAG00000032684	chromosome:C_jacchus3.2.1:17:1:74750902:1	42294061	42294583	R	<no descrition>
ENSCJAG00000002802	KNOWN_BY_PROJECTION	protein_coding	SLCO2A1	chromosome:C_jacchus3.2.1:17:1:74750902:1	42449351	42543104	D	solute carrier organic anion transporter family, member 2A1 [Source:HGNC Symbol;Acc:HGNC:10955]
ENSCJAG00000015871	KNOWN	protein_coding	CPT1A	chromosome:C_jacchus3.2.1:11:1:130397257:1	124291456	124377476	R	Carnitine O-palmitoyltransferase 1, liver isoform isoform 1 {ECO:0000313|EMBL:JAB07200.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029229}  [Source:UniProtKB/TrEMBL;Acc:F7HW42]
ENSCJAG00000004660	KNOWN_BY_PROJECTION	protein_coding	NHS	chromosome:C_jacchus3.2.1:X:1:142054208:1	15876803	15981723	D	Nance-Horan syndrome (congenital cataracts and dental anomalies) [Source:HGNC Symbol;Acc:HGNC:7820]
ENSCJAG00000002826	KNOWN	protein_coding	RAB6B	chromosome:C_jacchus3.2.1:17:1:74750902:1	42587305	42660260	D	Ras-related protein Rab-6B {ECO:0000313|EMBL:JAB07660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005159}  [Source:UniProtKB/TrEMBL;Acc:F7IHD5]
ENSCJAG00000006280	KNOWN	protein_coding	BRD8	chromosome:C_jacchus3.2.1:2:1:204313951:1	35006227	35045049	R	Bromodomain-containing protein 8 isoform 1 {ECO:0000313|EMBL:JAB06446.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011760}  [Source:UniProtKB/TrEMBL;Acc:F7FZY3]
ENSCJAG00000012112	KNOWN	protein_coding	ERP29	chromosome:C_jacchus3.2.1:9:1:124281992:1	102277410	102286214	D	Endoplasmic reticulum resident protein 29 {ECO:0000256|PIRNR:PIRNR027352}  [Source:UniProtKB/TrEMBL;Acc:F7C9F2]
ENSCJAG00000014548	NOVEL	pseudogene	ENSCJAG00000014548	chromosome:C_jacchus3.2.1:5:1:159171411:1	91570563	91571319	D	<no descrition>
ENSCJAG00000014516	KNOWN	protein_coding	MYO1D	chromosome:C_jacchus3.2.1:5:1:159171411:1	91601753	91986385	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026765}; Unconventional myosin-Id {ECO:0000313|EMBL:JAB08491.1}  [Source:UniProtKB/TrEMBL;Acc:F7IG85]
ENSCJAG00000012131	KNOWN	protein_coding	NAA25	chromosome:C_jacchus3.2.1:9:1:124281992:1	102292261	102378806	R	N-alpha-acetyltransferase 25, NatB auxiliary subunit {ECO:0000313|EMBL:JAB05792.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022477}  [Source:UniProtKB/TrEMBL;Acc:F7IPZ6]
ENSCJAG00000010186	KNOWN_BY_PROJECTION	protein_coding	FCN2	chromosome:C_jacchus3.2.1:1:1:210400635:1	178771910	179002523	D	ficolin (collagen/fibrinogen domain containing lectin) 2 [Source:HGNC Symbol;Acc:HGNC:3624]
ENSCJAG00000002845	KNOWN	protein_coding	SRPRB	chromosome:C_jacchus3.2.1:17:1:74750902:1	42669371	42684532	R	Signal recognition particle receptor subunit beta {ECO:0000313|EMBL:JAB04815.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005172}  [Source:UniProtKB/TrEMBL;Acc:F7IEY6]
ENSCJAG00000006560	KNOWN_BY_PROJECTION	protein_coding	HPCAL1	chromosome:C_jacchus3.2.1:14:1:108792865:1	98150150	98204913	R	hippocalcin-like 1 [Source:HGNC Symbol;Acc:HGNC:5145]
ENSCJAG00000031884	NOVEL	protein_coding	ENSCJAG00000031884	chromosome:C_jacchus3.2.1:11:1:130397257:1	124398325	124398742	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047304}  [Source:UniProtKB/TrEMBL;Acc:F7I441]
ENSCJAG00000010341	KNOWN_BY_PROJECTION	protein_coding	FCN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	179025064	179032643	R	ficolin (collagen/fibrinogen domain containing) 1 [Source:HGNC Symbol;Acc:HGNC:3623]
ENSCJAG00000022823	KNOWN	protein_coding	CDK5R1	chromosome:C_jacchus3.2.1:5:1:159171411:1	91990637	91993839	R	Cyclin-dependent kinase 5 activator 1 {ECO:0000313|EMBL:JAB22093.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041404}  [Source:UniProtKB/TrEMBL;Acc:F7DFC5]
ENSCJAG00000006533	KNOWN_BY_PROJECTION	protein_coding	RRM2	chromosome:C_jacchus3.2.1:14:1:108792865:1	98460563	98466541	R	ribonucleotide reductase M2 [Source:HGNC Symbol;Acc:HGNC:10452]
ENSCJAG00000014450	KNOWN	protein_coding	PSMD11	chromosome:C_jacchus3.2.1:5:1:159171411:1	92000804	92038098	R	26S proteasome non-ATPase regulatory subunit 11 {ECO:0000313|EMBL:JAB09538.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026694}  [Source:UniProtKB/TrEMBL;Acc:F7IT21]
ENSCJAG00000015881	KNOWN_BY_PROJECTION	protein_coding	MRPL21	chromosome:C_jacchus3.2.1:11:1:130397257:1	124421828	124435339	R	mitochondrial ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:14479]
ENSCJAG00000014560	NOVEL	protein_coding	ENSCJAG00000014560	chromosome:C_jacchus3.2.1:22:1:49145316:1	11053	306903	R	<no descrition>
ENSCJAG00000024579	NOVEL	protein_coding	ENSCJAG00000024579	chromosome:C_jacchus3.2.1:1:1:210400635:1	179210415	179212420	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019191}  [Source:UniProtKB/TrEMBL;Acc:F6QEL9]
ENSCJAG00000004677	NOVEL	protein_coding	ENSCJAG00000004677	chromosome:C_jacchus3.2.1:X:1:142054208:1	15989688	15998816	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008495}  [Source:UniProtKB/TrEMBL;Acc:F7I5X6]
ENSCJAG00000033082	NOVEL	protein_coding	ENSCJAG00000033082	chromosome:C_jacchus3.2.1:14:1:108792865:1	98490904	98492513	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050053}  [Source:UniProtKB/TrEMBL;Acc:F7FD87]
ENSCJAG00000006516	KNOWN_BY_PROJECTION	protein_coding	CYS1	chromosome:C_jacchus3.2.1:14:1:108792865:1	98496116	98516292	D	cystin 1 [Source:HGNC Symbol;Acc:HGNC:18525]
ENSCJAG00000003685	KNOWN	protein_coding	RAI2	chromosome:C_jacchus3.2.1:X:1:142054208:1	16067983	16132395	R	Retinoic acid-induced protein 2 isoform 1 {ECO:0000313|EMBL:JAB10587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006676}  [Source:UniProtKB/TrEMBL;Acc:F7GVF4]
ENSCJAG00000015887	KNOWN_BY_PROJECTION	protein_coding	IGHMBP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	124435469	124472310	D	immunoglobulin mu binding protein 2 [Source:HGNC Symbol;Acc:HGNC:5542]
ENSCJAG00000002848	KNOWN_BY_PROJECTION	protein_coding	TF	chromosome:C_jacchus3.2.1:17:1:74750902:1	42700401	42732921	R	transferrin [Source:HGNC Symbol;Acc:HGNC:11740]
ENSCJAG00000014502	KNOWN_BY_PROJECTION	protein_coding	MIER2	chromosome:C_jacchus3.2.1:22:1:49145316:1	51227	95500	R	mesoderm induction early response 1, family member 2 [Source:HGNC Symbol;Acc:HGNC:29210]
ENSCJAG00000003677	NOVEL	protein_coding	ENSCJAG00000003677	chromosome:C_jacchus3.2.1:X:1:142054208:1	16199905	16201369	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006671}  [Source:UniProtKB/TrEMBL;Acc:F7GVG9]
ENSCJAG00000006513	NOVEL	pseudogene	ENSCJAG00000006513	chromosome:C_jacchus3.2.1:14:1:108792865:1	98518115	98518414	R	<no descrition>
ENSCJAG00000006500	KNOWN_BY_PROJECTION	protein_coding	KLF11	chromosome:C_jacchus3.2.1:14:1:108792865:1	98538908	98545962	R	Kruppel-like factor 11 [Source:HGNC Symbol;Acc:HGNC:11811]
ENSCJAG00000003651	KNOWN_BY_PROJECTION	protein_coding	BEND2	chromosome:C_jacchus3.2.1:X:1:142054208:1	16437918	16480954	R	BEN domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28509]
ENSCJAG00000005718	KNOWN_BY_PROJECTION	protein_coding	OLFM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	179222903	179257999	D	olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]
ENSCJAG00000014443	NOVEL	pseudogene	ENSCJAG00000014443	chromosome:C_jacchus3.2.1:5:1:159171411:1	92071656	92073171	R	<no descrition>
ENSCJAG00000031905	NOVEL	protein_coding	ENSCJAG00000031905	chromosome:C_jacchus3.2.1:1:1:210400635:1	179609696	179610987	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049866}  [Source:UniProtKB/TrEMBL;Acc:F6YUP0]
ENSCJAG00000010430	KNOWN	protein_coding	C9ORF116	chromosome:C_jacchus3.2.1:1:1:210400635:1	179622319	179629485	R	UPF0691 protein C9orf116 isoform 1 {ECO:0000313|EMBL:JAB16115.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019214}  [Source:UniProtKB/TrEMBL;Acc:F6PIM7]
ENSCJAG00000007184	KNOWN_BY_PROJECTION	protein_coding	ODF2L	chromosome:C_jacchus3.2.1:7:1:155834243:1	122226373	122261884	R	outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
ENSCJAG00000010436	KNOWN_BY_PROJECTION	protein_coding	MRPS2	chromosome:C_jacchus3.2.1:1:1:210400635:1	179628104	179632024	D	mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495]
ENSCJAG00000010445	NOVEL	protein_coding	ENSCJAG00000010445	chromosome:C_jacchus3.2.1:1:1:210400635:1	179646405	179651391	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019268}  [Source:UniProtKB/TrEMBL;Acc:F6T4X2]
ENSCJAG00000005875	KNOWN_BY_PROJECTION	protein_coding	SCML2	chromosome:C_jacchus3.2.1:X:1:142054208:1	16500967	16629375	R	sex comb on midleg-like 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:10581]
ENSCJAG00000006431	KNOWN_BY_PROJECTION	protein_coding	GRHL1	chromosome:C_jacchus3.2.1:14:1:108792865:1	98593863	98648105	R	grainyhead-like 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17923]
ENSCJAG00000014376	KNOWN	protein_coding	ZNF207	chromosome:C_jacchus3.2.1:5:1:159171411:1	92098224	92120300	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026531}; Zinc finger protein 207 isoform b {ECO:0000313|EMBL:JAB04708.1}  [Source:UniProtKB/TrEMBL;Acc:F7IGD6]
ENSCJAG00000015894	KNOWN_BY_PROJECTION	protein_coding	MRGPRD	chromosome:C_jacchus3.2.1:11:1:130397257:1	124510687	124524750	R	MAS-related GPR, member D [Source:HGNC Symbol;Acc:HGNC:29626]
ENSCJAG00000015897	KNOWN_BY_PROJECTION	protein_coding	MRGPRF	chromosome:C_jacchus3.2.1:11:1:130397257:1	124545626	124555651	R	MAS-related GPR, member F [Source:HGNC Symbol;Acc:HGNC:24828]
ENSCJAG00000015902	KNOWN_BY_PROJECTION	protein_coding	TPCN2	chromosome:C_jacchus3.2.1:11:1:130397257:1	124592033	124634083	D	two pore segment channel 2 [Source:HGNC Symbol;Acc:HGNC:20820]
ENSCJAG00000018713	NOVEL	pseudogene	ENSCJAG00000018713	chromosome:C_jacchus3.2.1:12:1:121768101:1	97998616	97998889	R	<no descrition>
ENSCJAG00000007251	KNOWN_BY_PROJECTION	protein_coding	CLCA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	122312940	122345548	D	chloride channel accessory 2 [Source:HGNC Symbol;Acc:HGNC:2016]
ENSCJAG00000018714	KNOWN	protein_coding	DUSP5	chromosome:C_jacchus3.2.1:12:1:121768101:1	98025625	98040142	D	Dual specificity protein phosphatase {ECO:0000256|PIRNR:PIRNR000939}  [Source:UniProtKB/TrEMBL;Acc:F7I5X1]
ENSCJAG00000010456	NOVEL	protein_coding	ENSCJAG00000010456	chromosome:C_jacchus3.2.1:1:1:210400635:1	179664600	179668166	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019343}  [Source:UniProtKB/TrEMBL;Acc:F6R8F3]
ENSCJAG00000002927	KNOWN_BY_PROJECTION	protein_coding	TOPBP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	42797394	42861469	D	topoisomerase (DNA) II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]
ENSCJAG00000014505	KNOWN_BY_PROJECTION	protein_coding	THEG	chromosome:C_jacchus3.2.1:22:1:49145316:1	111357	119244	R	theg spermatid protein [Source:HGNC Symbol;Acc:HGNC:13706]
ENSCJAG00000014521	KNOWN_BY_PROJECTION	protein_coding	C2CD4C	chromosome:C_jacchus3.2.1:22:1:49145316:1	142610	143845	R	C2 calcium-dependent domain containing 4C [Source:HGNC Symbol;Acc:HGNC:29417]
ENSCJAG00000012832	KNOWN_BY_PROJECTION	protein_coding	SHC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	159023	174248	R	SHC (Src homology 2 domain containing) transforming protein 2 [Source:HGNC Symbol;Acc:HGNC:29869]
ENSCJAG00000018717	KNOWN	protein_coding	SMC3	chromosome:C_jacchus3.2.1:12:1:121768101:1	98109735	98145371	D	Structural maintenance of chromosomes protein 3 {ECO:0000313|EMBL:JAB07405.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034893}  [Source:UniProtKB/TrEMBL;Acc:F7IMA7]
ENSCJAG00000012846	KNOWN_BY_PROJECTION	protein_coding	ODF3L2	chromosome:C_jacchus3.2.1:22:1:49145316:1	186669	193400	R	outer dense fiber of sperm tails 3-like 2 [Source:HGNC Symbol;Acc:HGNC:26841]
ENSCJAG00000014317	KNOWN	protein_coding	ORAOV1	chromosome:C_jacchus3.2.1:11:1:130397257:1	125110320	125134752	R	Oral cancer-overexpressed protein 1 {ECO:0000313|EMBL:JAB01672.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026329}  [Source:UniProtKB/TrEMBL;Acc:F7IE44]
ENSCJAG00000014337	KNOWN_BY_PROJECTION	protein_coding	FGF4	chromosome:C_jacchus3.2.1:11:1:130397257:1	125214648	125216969	R	fibroblast growth factor 4 [Source:HGNC Symbol;Acc:HGNC:3682]
ENSCJAG00000012849	KNOWN_BY_PROJECTION	protein_coding	MADCAM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	216894	225173	D	mucosal vascular addressin cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:6765]
ENSCJAG00000010487	KNOWN_BY_PROJECTION	protein_coding	PAEP	chromosome:C_jacchus3.2.1:1:1:210400635:1	179679341	179701426	D	progestagen-associated endometrial protein [Source:HGNC Symbol;Acc:HGNC:8573]
ENSCJAG00000007285	KNOWN_BY_PROJECTION	protein_coding	CLCA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	122372420	122405549	D	chloride channel accessory 1 [Source:HGNC Symbol;Acc:HGNC:2015]
ENSCJAG00000009730	KNOWN_BY_PROJECTION	protein_coding	FGF3	chromosome:C_jacchus3.2.1:11:1:130397257:1	125251712	125261171	R	fibroblast growth factor 3 [Source:HGNC Symbol;Acc:HGNC:3681]
ENSCJAG00000012861	KNOWN_BY_PROJECTION	protein_coding	TPGS1	chromosome:C_jacchus3.2.1:22:1:49145316:1	226734	234063	D	tubulin polyglutamylase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:25058]
ENSCJAG00000010497	NOVEL	protein_coding	ENSCJAG00000010497	chromosome:C_jacchus3.2.1:1:1:210400635:1	179740524	179744528	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019364}  [Source:UniProtKB/TrEMBL;Acc:F6QP76]
ENSCJAG00000010510	KNOWN_BY_PROJECTION	protein_coding	LCN9	chromosome:C_jacchus3.2.1:1:1:210400635:1	179804510	179807428	D	lipocalin 9 [Source:HGNC Symbol;Acc:HGNC:17442]
ENSCJAG00000012867	KNOWN_BY_PROJECTION	protein_coding	CDC34	chromosome:C_jacchus3.2.1:22:1:49145316:1	240621	249901	D	cell division cycle 34 [Source:HGNC Symbol;Acc:HGNC:1734]
ENSCJAG00000000898	NOVEL	pseudogene	ENSCJAG00000000898	chromosome:C_jacchus3.2.1:11:1:130397257:1	125554249	125554510	D	<no descrition>
ENSCJAG00000012874	KNOWN_BY_PROJECTION	protein_coding	GZMM	chromosome:C_jacchus3.2.1:22:1:49145316:1	260309	263822	D	granzyme M (lymphocyte met-ase 1) [Source:HGNC Symbol;Acc:HGNC:4712]
ENSCJAG00000014362	KNOWN_BY_PROJECTION	protein_coding	C17orf75	chromosome:C_jacchus3.2.1:5:1:159171411:1	92128308	92139891	D	chromosome 17 open reading frame 75 [Source:HGNC Symbol;Acc:HGNC:30173]
ENSCJAG00000012880	KNOWN_BY_PROJECTION	protein_coding	BSG	chromosome:C_jacchus3.2.1:22:1:49145316:1	279723	289869	D	basigin (Ok blood group) [Source:HGNC Symbol;Acc:HGNC:1116]
ENSCJAG00000012271	KNOWN	protein_coding	TRAFD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	102402639	102437726	D	TRAF-type zinc finger domain-containing protein 1 {ECO:0000313|EMBL:JAB15397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022551}  [Source:UniProtKB/TrEMBL;Acc:F7IAW1]
ENSCJAG00000014342	KNOWN_BY_PROJECTION	protein_coding	RHBDL3	chromosome:C_jacchus3.2.1:5:1:159171411:1	92148855	92202421	R	rhomboid, veinlet-like 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:16502]
ENSCJAG00000000900	KNOWN_BY_PROJECTION	protein_coding	ANO1	chromosome:C_jacchus3.2.1:11:1:130397257:1	125554627	125671610	D	anoctamin 1, calcium activated chloride channel [Source:HGNC Symbol;Acc:HGNC:21625]
ENSCJAG00000006393	KNOWN_BY_PROJECTION	protein_coding	KIF20A	chromosome:C_jacchus3.2.1:2:1:204313951:1	35046361	35055603	D	kinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]
ENSCJAG00000012903	KNOWN_BY_PROJECTION	protein_coding	HCN2	chromosome:C_jacchus3.2.1:22:1:49145316:1	299528	341070	D	hyperpolarization activated cyclic nucleotide gated potassium channel 2 [Source:HGNC Symbol;Acc:HGNC:4846]
ENSCJAG00000012913	KNOWN_BY_PROJECTION	protein_coding	POLRMT	chromosome:C_jacchus3.2.1:22:1:49145316:1	341812	358089	R	polymerase (RNA) mitochondrial (DNA directed) [Source:HGNC Symbol;Acc:HGNC:9200]
ENSCJAG00000005834	KNOWN_BY_PROJECTION	protein_coding	CDKL5	chromosome:C_jacchus3.2.1:X:1:142054208:1	16699485	16892636	D	cyclin-dependent kinase-like 5 [Source:HGNC Symbol;Acc:HGNC:11411]
ENSCJAG00000012945	KNOWN	protein_coding	FGF22	chromosome:C_jacchus3.2.1:22:1:49145316:1	363155	366633	D	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F7G046]
ENSCJAG00000010516	KNOWN_BY_PROJECTION	protein_coding	SOHLH1	chromosome:C_jacchus3.2.1:1:1:210400635:1	179812007	179818034	R	spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:HGNC Symbol;Acc:HGNC:27845]
ENSCJAG00000037144	KNOWN_BY_PROJECTION	protein_coding	REM2	chromosome:C_jacchus3.2.1:10:1:132174527:1	46933512	46943617	D	RAS (RAD and GEM)-like GTP binding 2 [Source:HGNC Symbol;Acc:HGNC:20248]
ENSCJAG00000006418	KNOWN_BY_PROJECTION	protein_coding	CDC23	chromosome:C_jacchus3.2.1:2:1:204313951:1	35055722	35082322	R	cell division cycle 23 [Source:HGNC Symbol;Acc:HGNC:1724]
ENSCJAG00000010526	KNOWN_BY_PROJECTION	protein_coding	KCNT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	179859673	179911156	D	potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
ENSCJAG00000006420	KNOWN	protein_coding	TAF1B	chromosome:C_jacchus3.2.1:14:1:108792865:1	98662241	98739904	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011846}  [Source:UniProtKB/TrEMBL;Acc:F7D4T5]
ENSCJAG00000000932	KNOWN	protein_coding	FADD	chromosome:C_jacchus3.2.1:11:1:130397257:1	125691972	125696471	D	Protein FADD {ECO:0000313|EMBL:JAB08427.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050398}  [Source:UniProtKB/TrEMBL;Acc:F7EYM0]
ENSCJAG00000012317	KNOWN_BY_PROJECTION	protein_coding	HECTD4	chromosome:C_jacchus3.2.1:9:1:124281992:1	102453144	102597993	R	HECT domain containing E3 ubiquitin protein ligase 4 [Source:HGNC Symbol;Acc:HGNC:26611]
ENSCJAG00000014248	KNOWN	protein_coding	RHOT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	92246471	92321325	R	Mitochondrial Rho GTPase {ECO:0000256|PIRNR:PIRNR037488}  [Source:UniProtKB/TrEMBL;Acc:F7I9C8]
ENSCJAG00000007319	KNOWN_BY_PROJECTION	protein_coding	CLCA4	chromosome:C_jacchus3.2.1:7:1:155834243:1	122438699	122465716	D	chloride channel accessory 4 [Source:HGNC Symbol;Acc:HGNC:2018]
ENSCJAG00000000936	KNOWN	protein_coding	PPFIA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	125764986	125891149	D	Liprin-alpha-1 isoform b {ECO:0000313|EMBL:JAB07489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001678}  [Source:UniProtKB/TrEMBL;Acc:F7BY24]
ENSCJAG00000008409	KNOWN_BY_PROJECTION	protein_coding	PRMT5	chromosome:C_jacchus3.2.1:10:1:132174527:1	46980276	46990058	R	protein arginine methyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:10894]
ENSCJAG00000006454	KNOWN_BY_PROJECTION	protein_coding	GFRA3	chromosome:C_jacchus3.2.1:2:1:204313951:1	35122163	35144583	R	GDNF family receptor alpha 3 [Source:HGNC Symbol;Acc:HGNC:4245]
ENSCJAG00000005829	KNOWN_BY_PROJECTION	protein_coding	RS1	chromosome:C_jacchus3.2.1:X:1:142054208:1	16905820	16934090	R	retinoschisin 1 [Source:HGNC Symbol;Acc:HGNC:10457]
ENSCJAG00000002998	KNOWN	protein_coding	CDV3	chromosome:C_jacchus3.2.1:17:1:74750902:1	42881204	42898434	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005450}  [Source:UniProtKB/TrEMBL;Acc:F7I0L3]
ENSCJAG00000007329	NOVEL	protein_coding	ENSCJAG00000007329	chromosome:C_jacchus3.2.1:7:1:155834243:1	122511914	122547474	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050368}  [Source:UniProtKB/TrEMBL;Acc:F7FQN4]
ENSCJAG00000003014	KNOWN_BY_PROJECTION	protein_coding	BFSP2	chromosome:C_jacchus3.2.1:17:1:74750902:1	42975820	43040545	R	beaded filament structural protein 2, phakinin [Source:HGNC Symbol;Acc:HGNC:1041]
ENSCJAG00000003018	KNOWN	protein_coding	TMEM108	chromosome:C_jacchus3.2.1:17:1:74750902:1	43042727	43388188	R	Transmembrane protein 108 {ECO:0000313|EMBL:JAB43481.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005472}  [Source:UniProtKB/TrEMBL;Acc:F7HVY9]
ENSCJAG00000010583	KNOWN_BY_PROJECTION	protein_coding	CAMSAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	179927892	180116830	R	calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
ENSCJAG00000005798	KNOWN_BY_PROJECTION	protein_coding	PPEF1	chromosome:C_jacchus3.2.1:X:1:142054208:1	16958119	17107094	D	protein phosphatase, EF-hand calcium binding domain 1 [Source:HGNC Symbol;Acc:HGNC:9243]
ENSCJAG00000003024	NOVEL	pseudogene	ENSCJAG00000003024	chromosome:C_jacchus3.2.1:17:1:74750902:1	43244077	43245141	R	<no descrition>
ENSCJAG00000034342	NOVEL	protein_coding	ENSCJAG00000034342	chromosome:C_jacchus3.2.1:17:1:74750902:1	43551657	43552907	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052311}  [Source:UniProtKB/TrEMBL;Acc:F7HVG7]
ENSCJAG00000032884	NOVEL	protein_coding	ENSCJAG00000032884	chromosome:C_jacchus3.2.1:2:1:204313951:1	35137277	35138015	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042938}  [Source:UniProtKB/TrEMBL;Acc:F6W6M7]
ENSCJAG00000006466	KNOWN_BY_PROJECTION	protein_coding	CDC25C	chromosome:C_jacchus3.2.1:2:1:204313951:1	35154252	35209899	R	cell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]
ENSCJAG00000010646	NOVEL	protein_coding	ENSCJAG00000010646	chromosome:C_jacchus3.2.1:1:1:210400635:1	180010942	180011802	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019611}  [Source:UniProtKB/TrEMBL;Acc:F6PGR9]
ENSCJAG00000012958	NOVEL	pseudogene	ENSCJAG00000012958	chromosome:C_jacchus3.2.1:22:1:49145316:1	369239	369426	R	<no descrition>
ENSCJAG00000010649	NOVEL	protein_coding	ENSCJAG00000010649	chromosome:C_jacchus3.2.1:1:1:210400635:1	180062860	180086410	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019632}  [Source:UniProtKB/TrEMBL;Acc:F6TYR6]
ENSCJAG00000012960	KNOWN_BY_PROJECTION	protein_coding	RNF126	chromosome:C_jacchus3.2.1:22:1:49145316:1	370187	375178	R	ring finger protein 126 [Source:HGNC Symbol;Acc:HGNC:21151]
ENSCJAG00000022794	KNOWN_BY_PROJECTION	protein_coding	FGFBP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	175380953	175384030	D	fibroblast growth factor binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29451]
ENSCJAG00000012518	KNOWN_BY_PROJECTION	protein_coding	FGFBP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	175410192	175412805	D	fibroblast growth factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:19695]
ENSCJAG00000010665	KNOWN	protein_coding	NACC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	180136736	180222909	R	Nucleus accumbens-associated protein 2 {ECO:0000313|EMBL:JAB09574.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019683}  [Source:UniProtKB/TrEMBL;Acc:F6SQI3]
ENSCJAG00000012971	KNOWN_BY_PROJECTION	protein_coding	FSTL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	399329	406111	D	follistatin-like 3 (secreted glycoprotein) [Source:HGNC Symbol;Acc:HGNC:3973]
ENSCJAG00000006417	NOVEL	protein_coding	ENSCJAG00000006417	chromosome:C_jacchus3.2.1:14:1:108792865:1	98812290	98820148	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011816}  [Source:UniProtKB/TrEMBL;Acc:F7DML7]
ENSCJAG00000012505	KNOWN_BY_PROJECTION	protein_coding	CD38	chromosome:C_jacchus3.2.1:3:1:190850796:1	175500917	175573104	R	CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]
ENSCJAG00000012976	KNOWN_BY_PROJECTION	protein_coding	PRSS57	chromosome:C_jacchus3.2.1:22:1:49145316:1	408738	414620	R	protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
ENSCJAG00000007335	KNOWN	protein_coding	SH3GLB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	122589841	122633975	D	Endophilin-B1 isoform 1 {ECO:0000313|EMBL:JAB11806.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013691}  [Source:UniProtKB/TrEMBL;Acc:F7AE30]
ENSCJAG00000000985	KNOWN_BY_PROJECTION	protein_coding	CTTN	chromosome:C_jacchus3.2.1:11:1:130397257:1	125910712	125946714	D	cortactin [Source:HGNC Symbol;Acc:HGNC:3338]
ENSCJAG00000003035	KNOWN_BY_PROJECTION	protein_coding	DNAJC13	chromosome:C_jacchus3.2.1:17:1:74750902:1	43653399	43906319	R	DnaJ (Hsp40) homolog, subfamily C, member 13 [Source:HGNC Symbol;Acc:HGNC:30343]
ENSCJAG00000006394	KNOWN	protein_coding	YWHAQ	chromosome:C_jacchus3.2.1:14:1:108792865:1	99030431	99080880	D	14-3-3 protein theta {ECO:0000313|EMBL:JAB03664.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011814}  [Source:UniProtKB/TrEMBL;Acc:F7DMM3]
ENSCJAG00000018786	KNOWN_BY_PROJECTION	protein_coding	RBM20	chromosome:C_jacchus3.2.1:12:1:121768101:1	98185576	98395704	D	RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
ENSCJAG00000034885	NOVEL	pseudogene	ENSCJAG00000034885	chromosome:C_jacchus3.2.1:12:1:121768101:1	98257461	98258173	D	<no descrition>
ENSCJAG00000020203	KNOWN_BY_PROJECTION	protein_coding	PALM	chromosome:C_jacchus3.2.1:22:1:49145316:1	439933	462762	D	paralemmin [Source:HGNC Symbol;Acc:HGNC:8594]
ENSCJAG00000006472	NOVEL	pseudogene	ENSCJAG00000006472	chromosome:C_jacchus3.2.1:2:1:204313951:1	35158098	35158628	D	<no descrition>
ENSCJAG00000010688	NOVEL	pseudogene	ENSCJAG00000010688	chromosome:C_jacchus3.2.1:1:1:210400635:1	180252764	180253097	D	<no descrition>
ENSCJAG00000006479	KNOWN_BY_PROJECTION	protein_coding	FAM53C	chromosome:C_jacchus3.2.1:2:1:204313951:1	35217501	35230286	D	family with sequence similarity 53, member C [Source:HGNC Symbol;Acc:HGNC:1336]
ENSCJAG00000010692	KNOWN_BY_PROJECTION	protein_coding	LHX3	chromosome:C_jacchus3.2.1:1:1:210400635:1	180325200	180334133	R	LIM homeobox 3 [Source:HGNC Symbol;Acc:HGNC:6595]
ENSCJAG00000018795	KNOWN	protein_coding	PDCD4	chromosome:C_jacchus3.2.1:12:1:121768101:1	98432154	98460745	D	Programmed cell death protein 4 isoform 1 {ECO:0000313|EMBL:JAB11217.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034986}  [Source:UniProtKB/TrEMBL;Acc:F7I3G5]
ENSCJAG00000010708	KNOWN_BY_PROJECTION	protein_coding	QSOX2	chromosome:C_jacchus3.2.1:1:1:210400635:1	180338688	180359396	R	quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
ENSCJAG00000010714	NOVEL	pseudogene	ENSCJAG00000010714	chromosome:C_jacchus3.2.1:1:1:210400635:1	180384064	180384567	D	<no descrition>
ENSCJAG00000010719	NOVEL	protein_coding	ENSCJAG00000010719	chromosome:C_jacchus3.2.1:1:1:210400635:1	180419108	180431778	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019745}  [Source:UniProtKB/TrEMBL;Acc:F6WYA5]
ENSCJAG00000006369	KNOWN	protein_coding	ADAM17	chromosome:C_jacchus3.2.1:14:1:108792865:1	99110609	99175196	D	Disintegrin and metalloproteinase domain-containing protein 17 preproprotein {ECO:0000313|EMBL:JAB02720.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049037}  [Source:UniProtKB/TrEMBL;Acc:F6XYS2]
ENSCJAG00000012476	KNOWN_BY_PROJECTION	protein_coding	BST1	chromosome:C_jacchus3.2.1:3:1:190850796:1	175617984	175649498	R	bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:HGNC:1118]
ENSCJAG00000012949	KNOWN_BY_PROJECTION	protein_coding	DPP7	chromosome:C_jacchus3.2.1:1:1:210400635:1	180453103	181245881	R	dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
ENSCJAG00000014235	KNOWN_BY_PROJECTION	protein_coding	RNF135	chromosome:C_jacchus3.2.1:5:1:159171411:1	92342168	92357710	R	ring finger protein 135 [Source:HGNC Symbol;Acc:HGNC:21158]
ENSCJAG00000006510	KNOWN_BY_PROJECTION	protein_coding	KDM3B	chromosome:C_jacchus3.2.1:2:1:204313951:1	35233118	35314296	D	lysine (K)-specific demethylase 3B [Source:HGNC Symbol;Acc:HGNC:1337]
ENSCJAG00000014210	KNOWN_BY_PROJECTION	protein_coding	ADAP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	92368754	92406989	R	ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]
ENSCJAG00000005668	KNOWN	protein_coding	PHKA2	chromosome:C_jacchus3.2.1:X:1:142054208:1	17173507	17272928	R	Phosphorylase b kinase regulatory subunit alpha, liver isoform {ECO:0000313|EMBL:JAB45531.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010593}  [Source:UniProtKB/TrEMBL;Acc:F7I8G5]
ENSCJAG00000014201	KNOWN_BY_PROJECTION	protein_coding	TEFM	chromosome:C_jacchus3.2.1:5:1:159171411:1	92423547	92429750	D	transcription elongation factor, mitochondrial [Source:HGNC Symbol;Acc:HGNC:26223]
ENSCJAG00000014179	KNOWN_BY_PROJECTION	protein_coding	ATAD5	chromosome:C_jacchus3.2.1:5:1:159171411:1	92433477	92513724	R	ATPase family, AAA domain containing 5 [Source:HGNC Symbol;Acc:HGNC:25752]
ENSCJAG00000001019	KNOWN_BY_PROJECTION	protein_coding	SHANK2	chromosome:C_jacchus3.2.1:11:1:130397257:1	125982198	126580307	R	SH3 and multiple ankyrin repeat domains 2 [Source:HGNC Symbol;Acc:HGNC:14295]
ENSCJAG00000014198	KNOWN_BY_PROJECTION	protein_coding	ARHGDIA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92479899	92481873	D	Rho GDP dissociation inhibitor (GDI) alpha [Source:HGNC Symbol;Acc:HGNC:678]
ENSCJAG00000008389	KNOWN	protein_coding	HAUS4	chromosome:C_jacchus3.2.1:10:1:132174527:1	47005055	47017116	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015449}  [Source:UniProtKB/TrEMBL;Acc:F7GUH6]
ENSCJAG00000003027	KNOWN_BY_PROJECTION	protein_coding	ACAD11	chromosome:C_jacchus3.2.1:17:1:74750902:1	43689374	43754462	D	acyl-CoA dehydrogenase family, member 11 [Source:HGNC Symbol;Acc:HGNC:30211]
ENSCJAG00000007358	NOVEL	pseudogene	ENSCJAG00000007358	chromosome:C_jacchus3.2.1:7:1:155834243:1	122604680	122605319	D	<no descrition>
ENSCJAG00000031177	NOVEL	protein_coding	ENSCJAG00000031177	chromosome:C_jacchus3.2.1:12:1:121768101:1	98462320	98481078	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042757}  [Source:UniProtKB/TrEMBL;Acc:F6V3X0]
ENSCJAG00000012502	NOVEL	pseudogene	ENSCJAG00000012502	chromosome:C_jacchus3.2.1:3:1:190850796:1	175618574	175619195	D	<no descrition>
ENSCJAG00000014163	KNOWN	protein_coding	CRLF3	chromosome:C_jacchus3.2.1:5:1:159171411:1	92519396	92566713	D	Cytokine receptor-like factor 3 {ECO:0000313|EMBL:JAB04171.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026067}  [Source:UniProtKB/TrEMBL;Acc:F7HKF9]
ENSCJAG00000007370	KNOWN	protein_coding	HS2ST1	chromosome:C_jacchus3.2.1:7:1:155834243:1	122788925	123047064	D	Heparan sulfate 2-O-sulfotransferase 1 isoform 1 {ECO:0000313|EMBL:JAB11527.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013735}  [Source:UniProtKB/TrEMBL;Acc:F6X4C2]
ENSCJAG00000012393	KNOWN	protein_coding	FBXL5	chromosome:C_jacchus3.2.1:3:1:190850796:1	175707633	175749431	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022828}  [Source:UniProtKB/TrEMBL;Acc:F7HWI0]
ENSCJAG00000007385	KNOWN	protein_coding	LMO4	chromosome:C_jacchus3.2.1:7:1:155834243:1	123213363	123234760	D	LIM domain transcription factor LMO4 {ECO:0000313|EMBL:JAB11919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019708}  [Source:UniProtKB/TrEMBL;Acc:F6XL10]
ENSCJAG00000020198	KNOWN_BY_PROJECTION	protein_coding	MISP	chromosome:C_jacchus3.2.1:22:1:49145316:1	473079	480657	D	mitotic spindle positioning [Source:HGNC Symbol;Acc:HGNC:27000]
ENSCJAG00000003031	KNOWN	protein_coding	ACKR4	chromosome:C_jacchus3.2.1:17:1:74750902:1	43693526	43718724	R	C-C chemokine receptor type 11 {ECO:0000313|EMBL:JAB07987.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049909}  [Source:UniProtKB/TrEMBL;Acc:F6VC38]
ENSCJAG00000007407	NOVEL	protein_coding	ENSCJAG00000007407	chromosome:C_jacchus3.2.1:7:1:155834243:1	123495423	123496343	R	<no descrition>
ENSCJAG00000007408	NOVEL	pseudogene	ENSCJAG00000007408	chromosome:C_jacchus3.2.1:7:1:155834243:1	124493142	124493567	D	<no descrition>
ENSCJAG00000011451	KNOWN	protein_coding	NADSYN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	126868890	126979231	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021088}  [Source:UniProtKB/TrEMBL;Acc:F6TUK0]
ENSCJAG00000014133	KNOWN_BY_PROJECTION	protein_coding	SUZ12	chromosome:C_jacchus3.2.1:5:1:159171411:1	92578451	92648508	R	SUZ12 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:17101]
ENSCJAG00000018854	KNOWN	protein_coding	SHOC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	98526573	98569660	D	Leucine-rich repeat protein SHOC-2 isoform 1 {ECO:0000313|EMBL:JAB09315.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035065}  [Source:UniProtKB/TrEMBL;Acc:F7IB91]
ENSCJAG00000003103	KNOWN_BY_PROJECTION	protein_coding	ACPP	chromosome:C_jacchus3.2.1:17:1:74750902:1	43957353	44009709	R	acid phosphatase, prostate [Source:HGNC Symbol;Acc:HGNC:125]
ENSCJAG00000020162	KNOWN_BY_PROJECTION	protein_coding	PTBP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	509785	522885	D	polypyrimidine tract binding protein 1 [Source:HGNC Symbol;Acc:HGNC:9583]
ENSCJAG00000010741	KNOWN_BY_PROJECTION	protein_coding	GPSM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	180459398	180482522	D	G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
ENSCJAG00000010789	KNOWN	protein_coding	DNLZ	chromosome:C_jacchus3.2.1:1:1:210400635:1	180487162	180489376	R	DNL-type zinc finger protein {ECO:0000313|EMBL:JAB01676.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019911}  [Source:UniProtKB/TrEMBL;Acc:F6ZR56]
ENSCJAG00000012450	NOVEL	protein_coding	ENSCJAG00000012450	chromosome:C_jacchus3.2.1:9:1:124281992:1	102701494	102707987	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049054}  [Source:UniProtKB/TrEMBL;Acc:F6XA20]
ENSCJAG00000018886	NOVEL	pseudogene	ENSCJAG00000018886	chromosome:C_jacchus3.2.1:12:1:121768101:1	98629397	98633251	D	<no descrition>
ENSCJAG00000014132	NOVEL	pseudogene	ENSCJAG00000014132	chromosome:C_jacchus3.2.1:5:1:159171411:1	92663535	92664033	D	<no descrition>
ENSCJAG00000018888	NOVEL	pseudogene	ENSCJAG00000018888	chromosome:C_jacchus3.2.1:12:1:121768101:1	98655469	98656049	D	<no descrition>
ENSCJAG00000010809	KNOWN_BY_PROJECTION	protein_coding	CARD9	chromosome:C_jacchus3.2.1:1:1:210400635:1	180489538	180499971	R	caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
ENSCJAG00000017849	NOVEL	pseudogene	ENSCJAG00000017849	chromosome:C_jacchus3.2.1:5:1:159171411:1	92694375	92695098	D	<no descrition>
ENSCJAG00000007409	KNOWN	protein_coding	PKN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	124607157	124949621	D	Serine/threonine-protein kinase N2 {ECO:0000313|EMBL:JAB07402.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047414}  [Source:UniProtKB/TrEMBL;Acc:F7IMS3]
ENSCJAG00000014115	KNOWN	protein_coding	UTP6	chromosome:C_jacchus3.2.1:5:1:159171411:1	92698431	92738573	D	U3 small nucleolar RNA-associated protein 6 homolog {ECO:0000313|EMBL:JAB03691.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025966}  [Source:UniProtKB/TrEMBL;Acc:F6VAZ6]
ENSCJAG00000018889	KNOWN	protein_coding	GPAM	chromosome:C_jacchus3.2.1:12:1:121768101:1	99802211	99832682	R	Glycerol-3-phosphate acyltransferase 1, mitochondrial {ECO:0000313|EMBL:JAB05002.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035166}  [Source:UniProtKB/TrEMBL;Acc:F7HUP3]
ENSCJAG00000011436	KNOWN	protein_coding	DHCR7	chromosome:C_jacchus3.2.1:11:1:130397257:1	126903615	126918270	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048769}  [Source:UniProtKB/TrEMBL;Acc:F6Q9L1]
ENSCJAG00000008376	KNOWN	protein_coding	AJUBA	chromosome:C_jacchus3.2.1:10:1:132174527:1	47030455	47041137	R	LIM domain-containing protein ajuba isoform 1 {ECO:0000313|EMBL:JAB03125.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015429}  [Source:UniProtKB/TrEMBL;Acc:F7GZN5]
ENSCJAG00000003115	NOVEL	protein_coding	ENSCJAG00000003115	chromosome:C_jacchus3.2.1:17:1:74750902:1	44029105	44029714	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005653}  [Source:UniProtKB/TrEMBL;Acc:F7I0H0]
ENSCJAG00000003116	NOVEL	protein_coding	ENSCJAG00000003116	chromosome:C_jacchus3.2.1:17:1:74750902:1	44033093	44033751	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005656}  [Source:UniProtKB/TrEMBL;Acc:F7I0G8]
ENSCJAG00000010725	KNOWN_BY_PROJECTION	protein_coding	SNAPC4	chromosome:C_jacchus3.2.1:1:1:210400635:1	180503046	180528430	R	small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
ENSCJAG00000003118	KNOWN_BY_PROJECTION	protein_coding	CPNE4	chromosome:C_jacchus3.2.1:17:1:74750902:1	44596397	44776377	D	copine IV [Source:HGNC Symbol;Acc:HGNC:2317]
ENSCJAG00000012270	KNOWN_BY_PROJECTION	protein_coding	CC2D2A	chromosome:C_jacchus3.2.1:3:1:190850796:1	175753155	175904529	R	coiled-coil and C2 domain containing 2A [Source:HGNC Symbol;Acc:HGNC:29253]
ENSCJAG00000006743	KNOWN	protein_coding	REEP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	35317320	35329432	D	Receptor expression-enhancing protein 2 isoform 1 {ECO:0000313|EMBL:JAB22590.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012510}  [Source:UniProtKB/TrEMBL;Acc:F7H334]
ENSCJAG00000014110	KNOWN	protein_coding	COPRS	chromosome:C_jacchus3.2.1:5:1:159171411:1	92744746	92754669	D	Cooperator of PRMT5 {ECO:0000313|EMBL:JAB02505.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025921}  [Source:UniProtKB/TrEMBL;Acc:F6X1S5]
ENSCJAG00000008320	KNOWN	protein_coding	C14ORF93	chromosome:C_jacchus3.2.1:10:1:132174527:1	47045846	47070988	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015408}; Uncharacterized protein C14orf93 {ECO:0000313|EMBL:JAB07865.1}  [Source:UniProtKB/TrEMBL;Acc:F7GZV3]
ENSCJAG00000010838	NOVEL	protein_coding	ENSCJAG00000010838	chromosome:C_jacchus3.2.1:1:1:210400635:1	180533063	180540954	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050508}  [Source:UniProtKB/TrEMBL;Acc:F7G2J5]
ENSCJAG00000014108	NOVEL	protein_coding	ENSCJAG00000014108	chromosome:C_jacchus3.2.1:5:1:159171411:1	92984321	92988779	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025912}  [Source:UniProtKB/TrEMBL;Acc:F6X2C3]
ENSCJAG00000014106	NOVEL	protein_coding	ENSCJAG00000014106	chromosome:C_jacchus3.2.1:5:1:159171411:1	93015570	93016568	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025910}  [Source:UniProtKB/TrEMBL;Acc:F6X2E4]
ENSCJAG00000014099	KNOWN_BY_PROJECTION	protein_coding	RAB11FIP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	93031383	93130647	R	RAB11 family interacting protein 4 (class II) [Source:HGNC Symbol;Acc:HGNC:30267]
ENSCJAG00000006771	KNOWN	protein_coding	EGR1	chromosome:C_jacchus3.2.1:2:1:204313951:1	35349384	35353222	D	Early growth response protein 1 {ECO:0000313|EMBL:JAB13811.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012529}  [Source:UniProtKB/TrEMBL;Acc:F7H2X4]
ENSCJAG00000003136	NOVEL	protein_coding	ENSCJAG00000003136	chromosome:C_jacchus3.2.1:17:1:74750902:1	44728472	44729880	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005714}  [Source:UniProtKB/TrEMBL;Acc:F7IEK5]
ENSCJAG00000011477	KNOWN_BY_PROJECTION	protein_coding	ACY3	chromosome:C_jacchus3.2.1:11:1:130397257:1	126959424	126962231	D	aspartoacylase (aminocyclase) 3 [Source:HGNC Symbol;Acc:HGNC:24104]
ENSCJAG00000008299	KNOWN	protein_coding	PSMB5	chromosome:C_jacchus3.2.1:10:1:132174527:1	47099086	47109238	R	Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}  [Source:UniProtKB/TrEMBL;Acc:F7E9Q6]
ENSCJAG00000023221	KNOWN_BY_PROJECTION	protein_coding	PSMB11	chromosome:C_jacchus3.2.1:10:1:132174527:1	47116250	47118208	D	proteasome (prosome, macropain) subunit, beta type, 11 [Source:HGNC Symbol;Acc:HGNC:31963]
ENSCJAG00000011489	NOVEL	protein_coding	ENSCJAG00000011489	chromosome:C_jacchus3.2.1:11:1:130397257:1	127014070	127092584	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044873}  [Source:UniProtKB/TrEMBL;Acc:F7HGF1]
ENSCJAG00000031615	NOVEL	protein_coding	ENSCJAG00000031615	chromosome:C_jacchus3.2.1:10:1:132174527:1	47118209	47118361	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042924}  [Source:UniProtKB/TrEMBL;Acc:F6WQZ3]
ENSCJAG00000006776	KNOWN_BY_PROJECTION	protein_coding	ETF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	35393058	35428779	R	eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
ENSCJAG00000003143	KNOWN	protein_coding	MRPL3	chromosome:C_jacchus3.2.1:17:1:74750902:1	44796238	44838705	D	39S ribosomal protein L3, mitochondrial {ECO:0000313|EMBL:JAB03269.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005744}  [Source:UniProtKB/TrEMBL;Acc:F7IC72]
ENSCJAG00000010849	KNOWN_BY_PROJECTION	protein_coding	PMPCA	chromosome:C_jacchus3.2.1:1:1:210400635:1	180540992	180712837	D	peptidase (mitochondrial processing) alpha [Source:HGNC Symbol;Acc:HGNC:18667]
ENSCJAG00000032538	NOVEL	protein_coding	ENSCJAG00000032538	chromosome:C_jacchus3.2.1:11:1:130397257:1	127014098	127067278	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052225}  [Source:UniProtKB/TrEMBL;Acc:F7ILG6]
ENSCJAG00000008170	KNOWN_BY_PROJECTION	protein_coding	CDH24	chromosome:C_jacchus3.2.1:10:1:132174527:1	47120531	47131128	R	cadherin 24, type 2 [Source:HGNC Symbol;Acc:HGNC:14265]
ENSCJAG00000012464	KNOWN	protein_coding	PTPN11	chromosome:C_jacchus3.2.1:9:1:124281992:1	102716349	102816433	D	Tyrosine-protein phosphatase non-receptor type {ECO:0000256|PIRNR:PIRNR000929}  [Source:UniProtKB/TrEMBL;Acc:F7ICW6]
ENSCJAG00000007469	KNOWN	protein_coding	GTF2B	chromosome:C_jacchus3.2.1:7:1:155834243:1	124806640	124845382	R	Transcription initiation factor IIB {ECO:0000313|EMBL:JAB05729.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013920}  [Source:UniProtKB/TrEMBL;Acc:F6XPV5]
ENSCJAG00000010776	KNOWN_BY_PROJECTION	protein_coding	INPP5E	chromosome:C_jacchus3.2.1:1:1:210400635:1	180555101	180565488	R	inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:HGNC:21474]
ENSCJAG00000011499	NOVEL	protein_coding	ENSCJAG00000011499	chromosome:C_jacchus3.2.1:11:1:130397257:1	127039904	127106154	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048790}  [Source:UniProtKB/TrEMBL;Acc:F6Q8L9]
ENSCJAG00000034203	NOVEL	protein_coding	ENSCJAG00000034203	chromosome:C_jacchus3.2.1:11:1:130397257:1	127040339	127048301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047761}  [Source:UniProtKB/TrEMBL;Acc:F7E3E5]
ENSCJAG00000006360	KNOWN	protein_coding	IAH1	chromosome:C_jacchus3.2.1:14:1:108792865:1	99175520	99189399	R	Isoamyl acetate-hydrolyzing esterase 1 homolog {ECO:0000313|EMBL:JAB14801.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011729}  [Source:UniProtKB/TrEMBL;Acc:F7GM17]
ENSCJAG00000018940	KNOWN_BY_PROJECTION	protein_coding	TECTB	chromosome:C_jacchus3.2.1:12:1:121768101:1	99917818	99937319	D	tectorin beta [Source:HGNC Symbol;Acc:HGNC:11721]
ENSCJAG00000010865	KNOWN_BY_PROJECTION	protein_coding	SEC16A	chromosome:C_jacchus3.2.1:1:1:210400635:1	180567859	180770326	R	SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
ENSCJAG00000007493	KNOWN	protein_coding	CCBL2	chromosome:C_jacchus3.2.1:7:1:155834243:1	124883483	124962100	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013963}  [Source:UniProtKB/TrEMBL;Acc:F6VWT1]
ENSCJAG00000006276	KNOWN	protein_coding	CPSF3	chromosome:C_jacchus3.2.1:14:1:108792865:1	99190744	99244385	R	Cleavage and polyadenylation specificity factor subunit 3 {ECO:0000313|EMBL:JAB02567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011706}  [Source:UniProtKB/TrEMBL;Acc:F7GM73]
ENSCJAG00000011506	KNOWN_BY_PROJECTION	protein_coding	ZNF195	chromosome:C_jacchus3.2.1:11:1:130397257:1	127138336	127161386	R	zinc finger protein 195 [Source:HGNC Symbol;Acc:HGNC:12986]
ENSCJAG00000005571	KNOWN_BY_PROJECTION	protein_coding	GPR64	chromosome:C_jacchus3.2.1:X:1:142054208:1	17279410	17409698	R	G protein-coupled receptor 64 [Source:HGNC Symbol;Acc:HGNC:4516]
ENSCJAG00000037250	KNOWN_BY_PROJECTION	protein_coding	MRGPRE	chromosome:C_jacchus3.2.1:11:1:130397257:1	127191799	127299640	D	MAS-related GPR, member E [Source:HGNC Symbol;Acc:HGNC:30694]
ENSCJAG00000011520	KNOWN_BY_PROJECTION	protein_coding	MRGPRG	chromosome:C_jacchus3.2.1:11:1:130397257:1	127206019	127207252	D	MAS-related GPR, member G [Source:HGNC Symbol;Acc:HGNC:24829]
ENSCJAG00000013924	KNOWN_BY_PROJECTION	protein_coding	NF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	93182472	93481245	R	neurofibromin 1 [Source:HGNC Symbol;Acc:HGNC:7765]
ENSCJAG00000011522	KNOWN_BY_PROJECTION	protein_coding	OSBPL5	chromosome:C_jacchus3.2.1:11:1:130397257:1	127256281	127342169	D	oxysterol binding protein-like 5 [Source:HGNC Symbol;Acc:HGNC:16392]
ENSCJAG00000010332	KNOWN	protein_coding	BEND6	chromosome:C_jacchus3.2.1:4:1:171630274:1	58294083	58424979	D	BEN domain-containing protein 6 {ECO:0000313|EMBL:JAB03784.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019053}  [Source:UniProtKB/TrEMBL;Acc:F6THU7]
ENSCJAG00000000278	NOVEL	protein_coding	ENSCJAG00000000278	chromosome:C_jacchus3.2.1:10:1:132174527:1	47130606	47139551	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000469}  [Source:UniProtKB/TrEMBL;Acc:F7FA25]
ENSCJAG00000018943	KNOWN_BY_PROJECTION	protein_coding	ACSL5	chromosome:C_jacchus3.2.1:12:1:121768101:1	100000092	100052013	D	acyl-CoA synthetase long-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:16526]
ENSCJAG00000010922	KNOWN_BY_PROJECTION	protein_coding	NOTCH1	chromosome:C_jacchus3.2.1:1:1:210400635:1	180621925	180675135	R	notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
ENSCJAG00000006643	KNOWN	protein_coding	HSPA9	chromosome:C_jacchus3.2.1:2:1:204313951:1	35439886	35460863	R	Stress-70 protein, mitochondrial {ECO:0000313|EMBL:JAB09898.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012456}  [Source:UniProtKB/TrEMBL;Acc:F7EX47]
ENSCJAG00000010944	KNOWN_BY_PROJECTION	protein_coding	EGFL7	chromosome:C_jacchus3.2.1:1:1:210400635:1	180799700	180803650	D	EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
ENSCJAG00000008076	KNOWN	protein_coding	ACIN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	47132599	47633346	R	Homeobox and leucine zipper protein Homez {ECO:0000313|EMBL:JAB11812.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014799}  [Source:UniProtKB/TrEMBL;Acc:F7IG63]
ENSCJAG00000011585	NOVEL	protein_coding	ENSCJAG00000011585	chromosome:C_jacchus3.2.1:11:1:130397257:1	127361856	127422315	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021370}  [Source:UniProtKB/TrEMBL;Acc:F6TH73]
ENSCJAG00000012544	KNOWN_BY_PROJECTION	protein_coding	RPH3A	chromosome:C_jacchus3.2.1:9:1:124281992:1	103144339	103260388	D	rabphilin 3A [Source:HGNC Symbol;Acc:HGNC:17056]
ENSCJAG00000003160	KNOWN	protein_coding	ENSCJAG00000003160	chromosome:C_jacchus3.2.1:17:1:74750902:1	44913769	44915805	R	U8 snoRNA-decapping enzyme isoform 2 {ECO:0000313|EMBL:JAB23763.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005756}  [Source:UniProtKB/TrEMBL;Acc:F7IC47]
ENSCJAG00000020154	NOVEL	protein_coding	ENSCJAG00000020154	chromosome:C_jacchus3.2.1:22:1:49145316:1	524319	534683	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037492}  [Source:UniProtKB/TrEMBL;Acc:F7AYK5]
ENSCJAG00000003162	KNOWN_BY_PROJECTION	protein_coding	NUDT16	chromosome:C_jacchus3.2.1:17:1:74750902:1	44930400	44932860	R	nudix (nucleoside diphosphate linked moiety X)-type motif 16 [Source:HGNC Symbol;Acc:HGNC:26442]
ENSCJAG00000035304	KNOWN_BY_PROJECTION	protein_coding	ELANE	chromosome:C_jacchus3.2.1:22:1:49145316:1	556073	568964	D	elastase, neutrophil expressed [Source:HGNC Symbol;Acc:HGNC:3309]
ENSCJAG00000002022	KNOWN_BY_PROJECTION	protein_coding	GBP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	124990722	124999228	D	guanylate binding protein 1, interferon-inducible [Source:HGNC Symbol;Acc:HGNC:4182]
ENSCJAG00000020146	KNOWN_BY_PROJECTION	protein_coding	CFD	chromosome:C_jacchus3.2.1:22:1:49145316:1	572700	578917	D	complement factor D (adipsin) [Source:HGNC Symbol;Acc:HGNC:2771]
ENSCJAG00000010959	KNOWN_BY_PROJECTION	protein_coding	AGPAT2	chromosome:C_jacchus3.2.1:1:1:210400635:1	180804691	180819423	R	1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:325]
ENSCJAG00000010976	KNOWN	protein_coding	FAM69B	chromosome:C_jacchus3.2.1:1:1:210400635:1	180837121	180852577	D	Protein FAM69B {ECO:0000313|EMBL:JAB01881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020253}  [Source:UniProtKB/TrEMBL;Acc:F7EEN2]
ENSCJAG00000036053	NOVEL	protein_coding	ENSCJAG00000036053	chromosome:C_jacchus3.2.1:7:1:155834243:1	125053056	125253678	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003598}  [Source:UniProtKB/TrEMBL;Acc:F7DDM4]
ENSCJAG00000006250	KNOWN	protein_coding	ITGB1BP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	99244541	99257875	D	Integrin beta-1-binding protein 1 isoform 1 {ECO:0000313|EMBL:JAB05182.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011539}  [Source:UniProtKB/TrEMBL;Acc:F7IB20]
ENSCJAG00000010980	KNOWN_BY_PROJECTION	protein_coding	LCN10	chromosome:C_jacchus3.2.1:1:1:210400635:1	180866945	180870689	R	lipocalin 10 [Source:HGNC Symbol;Acc:HGNC:20892]
ENSCJAG00000010994	NOVEL	protein_coding	ENSCJAG00000010994	chromosome:C_jacchus3.2.1:1:1:210400635:1	180872276	180875823	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020299}  [Source:UniProtKB/TrEMBL;Acc:F7DKE4]
ENSCJAG00000005496	KNOWN	protein_coding	PDHA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	17635592	17652178	D	Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}  [Source:UniProtKB/TrEMBL;Acc:F7H490]
ENSCJAG00000011006	KNOWN_BY_PROJECTION	protein_coding	LCN8	chromosome:C_jacchus3.2.1:1:1:210400635:1	180885472	180888899	R	lipocalin 8 [Source:HGNC Symbol;Acc:HGNC:27038]
ENSCJAG00000006820	KNOWN_BY_PROJECTION	protein_coding	CTNNA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	35633630	35812858	D	catenin (cadherin-associated protein), alpha 1, 102kDa [Source:HGNC Symbol;Acc:HGNC:2509]
ENSCJAG00000011018	KNOWN_BY_PROJECTION	protein_coding	LCN15	chromosome:C_jacchus3.2.1:1:1:210400635:1	180894466	180898823	R	lipocalin 15 [Source:HGNC Symbol;Acc:HGNC:33777]
ENSCJAG00000020119	KNOWN_BY_PROJECTION	protein_coding	MED16	chromosome:C_jacchus3.2.1:22:1:49145316:1	585001	604359	R	mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
ENSCJAG00000033757	KNOWN_BY_PROJECTION	protein_coding	TMEM141	chromosome:C_jacchus3.2.1:1:1:210400635:1	180908645	180909650	D	transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
ENSCJAG00000011036	KNOWN_BY_PROJECTION	protein_coding	CCDC183	chromosome:C_jacchus3.2.1:1:1:210400635:1	180915039	180925734	D	coiled-coil domain containing 183 [Source:HGNC Symbol;Acc:HGNC:28236]
ENSCJAG00000003164	KNOWN_BY_PROJECTION	protein_coding	NEK11	chromosome:C_jacchus3.2.1:17:1:74750902:1	44951485	45268538	R	NIMA-related kinase 11 [Source:HGNC Symbol;Acc:HGNC:18593]
ENSCJAG00000010713	NOVEL	protein_coding	ENSCJAG00000010713	chromosome:C_jacchus3.2.1:4:1:171630274:1	58296845	58298191	D	Mitochondrial import inner membrane translocase subunit TIM44 {ECO:0000256|PIRNR:PIRNR037871}  [Source:UniProtKB/TrEMBL;Acc:F6XJE6]
ENSCJAG00000036354	NOVEL	protein_coding	ENSCJAG00000036354	chromosome:C_jacchus3.2.1:7:1:155834243:1	125061471	125237791	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003630}  [Source:UniProtKB/TrEMBL;Acc:F7H9U2]
ENSCJAG00000012263	KNOWN_BY_PROJECTION	protein_coding	C1QTNF7	chromosome:C_jacchus3.2.1:3:1:190850796:1	175932235	176038147	R	C1q and tumor necrosis factor related protein 7 [Source:HGNC Symbol;Acc:HGNC:14342]
ENSCJAG00000012257	NOVEL	pseudogene	ENSCJAG00000012257	chromosome:C_jacchus3.2.1:3:1:190850796:1	176062432	176063086	R	<no descrition>
ENSCJAG00000036835	NOVEL	protein_coding	ENSCJAG00000036835	chromosome:C_jacchus3.2.1:11:1:130397257:1	127376883	127418609	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043963}  [Source:UniProtKB/TrEMBL;Acc:F7IRC1]
ENSCJAG00000002018	NOVEL	protein_coding	ENSCJAG00000002018	chromosome:C_jacchus3.2.1:7:1:155834243:1	125094934	125138177	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003640}  [Source:UniProtKB/TrEMBL;Acc:F7H4S2]
ENSCJAG00000010265	KNOWN	protein_coding	ZNF451	chromosome:C_jacchus3.2.1:4:1:171630274:1	58440755	58573048	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019019}; Zinc finger protein 451 isoform 1 {ECO:0000313|EMBL:JAB05235.1}  [Source:UniProtKB/TrEMBL;Acc:F6PKC0]
ENSCJAG00000012227	KNOWN_BY_PROJECTION	protein_coding	CPEB2	chromosome:C_jacchus3.2.1:3:1:190850796:1	176277892	176511967	R	cytoplasmic polyadenylation element binding protein 2 [Source:HGNC Symbol;Acc:HGNC:21745]
ENSCJAG00000001988	KNOWN	protein_coding	GBP5	chromosome:C_jacchus3.2.1:7:1:155834243:1	125173316	125327686	R	Guanylate-binding protein 5 {ECO:0000313|EMBL:JAB04156.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003579}  [Source:UniProtKB/TrEMBL;Acc:F7E8X1]
ENSCJAG00000011060	KNOWN_BY_PROJECTION	protein_coding	RABL6	chromosome:C_jacchus3.2.1:1:1:210400635:1	180927179	181019271	D	RAB, member RAS oncogene family-like 6 [Source:HGNC Symbol;Acc:HGNC:24703]
ENSCJAG00000018956	KNOWN	protein_coding	ZDHHC6	chromosome:C_jacchus3.2.1:12:1:121768101:1	100054569	100071183	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F7IKK1]
ENSCJAG00000031662	NOVEL	protein_coding	ENSCJAG00000031662	chromosome:C_jacchus3.2.1:17:1:74750902:1	45209202	45210837	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046978}  [Source:UniProtKB/TrEMBL;Acc:F7I161]
ENSCJAG00000006857	KNOWN	protein_coding	LRRTM2	chromosome:C_jacchus3.2.1:2:1:204313951:1	35742879	35748836	R	Leucine-rich repeat transmembrane neuronal protein 2 {ECO:0000313|EMBL:JAB19950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012695}  [Source:UniProtKB/TrEMBL;Acc:F6TM45]
ENSCJAG00000006233	KNOWN	protein_coding	ASAP2	chromosome:C_jacchus3.2.1:14:1:108792865:1	99260230	99454451	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011485}  [Source:UniProtKB/TrEMBL;Acc:F7IMS4]
ENSCJAG00000003181	KNOWN_BY_PROJECTION	protein_coding	ASTE1	chromosome:C_jacchus3.2.1:17:1:74750902:1	45268579	45281139	D	asteroid homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:25021]
ENSCJAG00000011636	KNOWN_BY_PROJECTION	protein_coding	NAP1L4	chromosome:C_jacchus3.2.1:11:1:130397257:1	127432478	127573226	D	nucleosome assembly protein 1-like 4 [Source:HGNC Symbol;Acc:HGNC:7640]
ENSCJAG00000010330	NOVEL	protein_coding	ENSCJAG00000010330	chromosome:C_jacchus3.2.1:4:1:171630274:1	58458819	58460855	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019024}  [Source:UniProtKB/TrEMBL;Acc:F6PJM5]
ENSCJAG00000006861	KNOWN_BY_PROJECTION	protein_coding	SIL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	35827024	36065973	R	SIL1 nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:24624]
ENSCJAG00000034715	NOVEL	protein_coding	ENSCJAG00000034715	chromosome:C_jacchus3.2.1:14:1:108792865:1	99375489	99376279	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048507}  [Source:UniProtKB/TrEMBL;Acc:F7GDG1]
ENSCJAG00000032620	NOVEL	protein_coding	ENSCJAG00000032620	chromosome:C_jacchus3.2.1:4:1:171630274:1	58465058	58465912	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043167}  [Source:UniProtKB/TrEMBL;Acc:F7IJW9]
ENSCJAG00000012624	KNOWN_BY_PROJECTION	protein_coding	OAS1	chromosome:C_jacchus3.2.1:9:1:124281992:1	103268500	103296593	D	2'-5'-oligoadenylate synthetase 1, 40/46kDa [Source:HGNC Symbol;Acc:HGNC:8086]
ENSCJAG00000011094	KNOWN_BY_PROJECTION	protein_coding	C9orf172	chromosome:C_jacchus3.2.1:1:1:210400635:1	180967992	180971326	D	chromosome 9 open reading frame 172 [Source:HGNC Symbol;Acc:HGNC:37284]
ENSCJAG00000006207	KNOWN_BY_PROJECTION	protein_coding	MBOAT2	chromosome:C_jacchus3.2.1:14:1:108792865:1	99643243	99800084	D	membrane bound O-acyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25193]
ENSCJAG00000011097	KNOWN	protein_coding	PHPT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	180973716	181099755	D	14 kDa phosphohistidine phosphatase isoform 3 {ECO:0000313|EMBL:JAB23371.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020485}  [Source:UniProtKB/TrEMBL;Acc:F7D0W3]
ENSCJAG00000018977	KNOWN	protein_coding	VTI1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	100071364	100454763	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035257}; Vesicle transport through interaction with t-SNAREs homolog 1A {ECO:0000313|EMBL:JAB02381.1}  [Source:UniProtKB/TrEMBL;Acc:F7IIA6]
ENSCJAG00000003182	KNOWN_BY_PROJECTION	protein_coding	ATP2C1	chromosome:C_jacchus3.2.1:17:1:74750902:1	45278415	45450154	R	ATPase, Ca++ transporting, type 2C, member 1 [Source:HGNC Symbol;Acc:HGNC:13211]
ENSCJAG00000001955	NOVEL	protein_coding	ENSCJAG00000001955	chromosome:C_jacchus3.2.1:7:1:155834243:1	125386669	125411185	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003558}  [Source:UniProtKB/TrEMBL;Acc:F7ELW1]
ENSCJAG00000010258	KNOWN	protein_coding	BAG2	chromosome:C_jacchus3.2.1:4:1:171630274:1	58575429	58588132	D	BAG family molecular chaperone regulator 2 {ECO:0000313|EMBL:JAB08870.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018895}  [Source:UniProtKB/TrEMBL;Acc:F7HB07]
ENSCJAG00000011117	KNOWN_BY_PROJECTION	protein_coding	MAMDC4	chromosome:C_jacchus3.2.1:1:1:210400635:1	180977561	180985690	D	MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
ENSCJAG00000005459	KNOWN_BY_PROJECTION	protein_coding	MAP3K15	chromosome:C_jacchus3.2.1:X:1:142054208:1	17653334	17789260	R	mitogen-activated protein kinase kinase kinase 15 [Source:HGNC Symbol;Acc:HGNC:31689]
ENSCJAG00000035082	NOVEL	protein_coding	ENSCJAG00000035082	chromosome:C_jacchus3.2.1:2:1:204313951:1	36070408	36070671	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050710}  [Source:UniProtKB/TrEMBL;Acc:F7EHW5]
ENSCJAG00000010247	KNOWN	protein_coding	RAB23	chromosome:C_jacchus3.2.1:4:1:171630274:1	58592303	58625444	R	Ras-related protein Rab-23 {ECO:0000313|EMBL:JAB08329.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018884}  [Source:UniProtKB/TrEMBL;Acc:F7HB26]
ENSCJAG00000011677	NOVEL	pseudogene	ENSCJAG00000011677	chromosome:C_jacchus3.2.1:11:1:130397257:1	127433492	127433621	R	<no descrition>
ENSCJAG00000011680	KNOWN_BY_PROJECTION	protein_coding	PHLDA2	chromosome:C_jacchus3.2.1:11:1:130397257:1	127495665	127496809	D	pleckstrin homology-like domain, family A, member 2 [Source:HGNC Symbol;Acc:HGNC:12385]
ENSCJAG00000014096	NOVEL	protein_coding	ENSCJAG00000014096	chromosome:C_jacchus3.2.1:5:1:159171411:1	93240025	93243380	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025894}  [Source:UniProtKB/TrEMBL;Acc:F6YVI7]
ENSCJAG00000014095	KNOWN_BY_PROJECTION	protein_coding	EVI2B	chromosome:C_jacchus3.2.1:5:1:159171411:1	93247680	93299133	D	ecotropic viral integration site 2B [Source:HGNC Symbol;Acc:HGNC:3500]
ENSCJAG00000008070	KNOWN_BY_PROJECTION	protein_coding	C14orf119	chromosome:C_jacchus3.2.1:10:1:132174527:1	47169975	47172560	D	chromosome 14 open reading frame 119 [Source:HGNC Symbol;Acc:HGNC:20270]
ENSCJAG00000018987	KNOWN_BY_PROJECTION	protein_coding	TCF7L2	chromosome:C_jacchus3.2.1:12:1:121768101:1	100680181	100810078	D	transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:HGNC Symbol;Acc:HGNC:11641]
ENSCJAG00000011682	KNOWN_BY_PROJECTION	protein_coding	SLC22A18	chromosome:C_jacchus3.2.1:11:1:130397257:1	127499685	127528437	R	solute carrier family 22, member 18 [Source:HGNC Symbol;Acc:HGNC:10964]
ENSCJAG00000008065	KNOWN_BY_PROJECTION	protein_coding	CEBPE	chromosome:C_jacchus3.2.1:10:1:132174527:1	47192584	47194718	R	CCAAT/enhancer binding protein (C/EBP), epsilon [Source:HGNC Symbol;Acc:HGNC:1836]
ENSCJAG00000014092	KNOWN	protein_coding	OMG	chromosome:C_jacchus3.2.1:5:1:159171411:1	93268043	93270775	D	Oligodendrocyte-myelin glycoprotein {ECO:0000313|EMBL:JAB17399.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025889}  [Source:UniProtKB/TrEMBL;Acc:F6ZCG5]
ENSCJAG00000036022	NOVEL	protein_coding	ENSCJAG00000036022	chromosome:C_jacchus3.2.1:10:1:132174527:1	47193282	47194454	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042848}  [Source:UniProtKB/TrEMBL;Acc:F7A4M3]
ENSCJAG00000014090	NOVEL	pseudogene	ENSCJAG00000014090	chromosome:C_jacchus3.2.1:5:1:159171411:1	93469179	93469650	R	<no descrition>
ENSCJAG00000014086	NOVEL	pseudogene	ENSCJAG00000014086	chromosome:C_jacchus3.2.1:5:1:159171411:1	93475413	93476033	D	<no descrition>
ENSCJAG00000011699	NOVEL	protein_coding	ENSCJAG00000011699	chromosome:C_jacchus3.2.1:11:1:130397257:1	127528291	127544295	D	<no descrition>
ENSCJAG00000011166	NOVEL	protein_coding	ENSCJAG00000011166	chromosome:C_jacchus3.2.1:1:1:210400635:1	180987180	180992484	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020588}  [Source:UniProtKB/TrEMBL;Acc:F7G908]
ENSCJAG00000013915	KNOWN	protein_coding	GOSR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	93555357	93591197	R	Golgi SNAP receptor complex member 1 {ECO:0000256|PIRNR:PIRNR027109}  [Source:UniProtKB/TrEMBL;Acc:F6WJ38]
ENSCJAG00000011703	KNOWN_BY_PROJECTION	protein_coding	CDKN1C	chromosome:C_jacchus3.2.1:11:1:130397257:1	127546497	127549176	D	cyclin-dependent kinase inhibitor 1C (p57, Kip2) [Source:HGNC Symbol;Acc:HGNC:1786]
ENSCJAG00000006888	KNOWN	protein_coding	MATR3	chromosome:C_jacchus3.2.1:2:1:204313951:1	36143286	36223379	D	Callithrix jacchus matrin 3 (MATR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205240]
ENSCJAG00000012166	KNOWN_BY_PROJECTION	protein_coding	BOD1L1	chromosome:C_jacchus3.2.1:3:1:190850796:1	177770982	177834696	D	biorientation of chromosomes in cell division 1-like 1 [Source:HGNC Symbol;Acc:HGNC:31792]
ENSCJAG00000011179	KNOWN	protein_coding	TRAF2	chromosome:C_jacchus3.2.1:1:1:210400635:1	181003804	181044250	D	TNF receptor-associated factor 2 {ECO:0000313|EMBL:JAB06058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020621}  [Source:UniProtKB/TrEMBL;Acc:F7F4I2]
ENSCJAG00000008020	KNOWN	protein_coding	SLC7A8	chromosome:C_jacchus3.2.1:10:1:132174527:1	47199511	47258043	R	Large neutral amino acids transporter small subunit 2 isoform a {ECO:0000313|EMBL:JAB04022.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049897}  [Source:UniProtKB/TrEMBL;Acc:F6YCK3]
ENSCJAG00000013845	KNOWN	protein_coding	CPD	chromosome:C_jacchus3.2.1:5:1:159171411:1	93599445	93678121	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025555}  [Source:UniProtKB/TrEMBL;Acc:F6XTA7]
ENSCJAG00000011708	KNOWN_BY_PROJECTION	protein_coding	KCNQ1	chromosome:C_jacchus3.2.1:11:1:130397257:1	127584673	128000732	R	potassium channel, voltage gated KQT-like subfamily Q, member 1 [Source:HGNC Symbol;Acc:HGNC:6294]
ENSCJAG00000014749	KNOWN_BY_PROJECTION	protein_coding	TRPM5	chromosome:C_jacchus3.2.1:11:1:130397257:1	128023534	128040973	D	transient receptor potential cation channel, subfamily M, member 5 [Source:HGNC Symbol;Acc:HGNC:14323]
ENSCJAG00000005449	KNOWN	protein_coding	SH3KBP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	17716669	18170935	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009956}  [Source:UniProtKB/TrEMBL;Acc:F7HCA0]
ENSCJAG00000020114	KNOWN_BY_PROJECTION	protein_coding	R3HDM4	chromosome:C_jacchus3.2.1:22:1:49145316:1	609573	641222	R	R3H domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28270]
ENSCJAG00000011199	KNOWN_BY_PROJECTION	protein_coding	C8G	chromosome:C_jacchus3.2.1:1:1:210400635:1	181060993	181062579	D	complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:HGNC:1354]
ENSCJAG00000020111	KNOWN_BY_PROJECTION	protein_coding	ARID3A	chromosome:C_jacchus3.2.1:22:1:49145316:1	636200	682432	D	AT rich interactive domain 3A (BRIGHT-like) [Source:HGNC Symbol;Acc:HGNC:3031]
ENSCJAG00000014747	KNOWN_BY_PROJECTION	protein_coding	TSSC4	chromosome:C_jacchus3.2.1:11:1:130397257:1	128045633	128048519	R	tumor suppressing subtransferable candidate 4 [Source:HGNC Symbol;Acc:HGNC:12386]
ENSCJAG00000014738	KNOWN_BY_PROJECTION	protein_coding	CD81	chromosome:C_jacchus3.2.1:11:1:130397257:1	128051495	128059550	R	CD81 molecule [Source:HGNC Symbol;Acc:HGNC:1701]
ENSCJAG00000020105	KNOWN_BY_PROJECTION	protein_coding	WDR18	chromosome:C_jacchus3.2.1:22:1:49145316:1	691157	707755	D	WD repeat domain 18 [Source:HGNC Symbol;Acc:HGNC:17956]
ENSCJAG00000003293	KNOWN_BY_PROJECTION	protein_coding	PIK3R4	chromosome:C_jacchus3.2.1:17:1:74750902:1	45540726	45611229	D	phosphoinositide-3-kinase, regulatory subunit 4 [Source:HGNC Symbol;Acc:HGNC:8982]
ENSCJAG00000011213	KNOWN_BY_PROJECTION	protein_coding	LCN12	chromosome:C_jacchus3.2.1:1:1:210400635:1	181071785	181074514	D	lipocalin 12 [Source:HGNC Symbol;Acc:HGNC:28733]
ENSCJAG00000019000	KNOWN_BY_PROJECTION	protein_coding	HABP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	101189231	101253184	D	hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
ENSCJAG00000010546	KNOWN_BY_PROJECTION	protein_coding	C11orf21	chromosome:C_jacchus3.2.1:11:1:130397257:1	128144206	128145845	D	chromosome 11 open reading frame 21 [Source:HGNC Symbol;Acc:HGNC:13231]
ENSCJAG00000010236	KNOWN	protein_coding	PRIM2	chromosome:C_jacchus3.2.1:4:1:171630274:1	58728835	59058291	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018868}  [Source:UniProtKB/TrEMBL;Acc:F7HG37]
ENSCJAG00000001945	KNOWN_BY_PROJECTION	protein_coding	GBP6	chromosome:C_jacchus3.2.1:7:1:155834243:1	125425423	125444286	D	guanylate binding protein family, member 6 [Source:HGNC Symbol;Acc:HGNC:25395]
ENSCJAG00000010228	NOVEL	pseudogene	ENSCJAG00000010228	chromosome:C_jacchus3.2.1:4:1:171630274:1	59086390	59087378	R	<no descrition>
ENSCJAG00000010223	NOVEL	pseudogene	ENSCJAG00000010223	chromosome:C_jacchus3.2.1:4:1:171630274:1	59326397	59327218	R	<no descrition>
ENSCJAG00000010204	NOVEL	protein_coding	ENSCJAG00000010204	chromosome:C_jacchus3.2.1:4:1:171630274:1	59507832	59552984	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018782}  [Source:UniProtKB/TrEMBL;Acc:F7EB63]
ENSCJAG00000012642	KNOWN_BY_PROJECTION	protein_coding	OAS3	chromosome:C_jacchus3.2.1:9:1:124281992:1	103303297	103329919	D	2'-5'-oligoadenylate synthetase 3, 100kDa [Source:HGNC Symbol;Acc:HGNC:8088]
ENSCJAG00000010209	KNOWN	protein_coding	LIN7C	chromosome:C_jacchus3.2.1:4:1:171630274:1	59523874	59533474	D	Protein lin-7 homolog C {ECO:0000313|EMBL:JAB01611.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018813}  [Source:UniProtKB/TrEMBL;Acc:F7DG56]
ENSCJAG00000003330	KNOWN_BY_PROJECTION	protein_coding	COL6A6	chromosome:C_jacchus3.2.1:17:1:74750902:1	45613086	45725290	R	collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]
ENSCJAG00000012824	KNOWN_BY_PROJECTION	protein_coding	ABCA2	chromosome:C_jacchus3.2.1:1:1:210400635:1	181073395	181616450	R	ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
ENSCJAG00000001922	KNOWN	protein_coding	LRRC8B	chromosome:C_jacchus3.2.1:7:1:155834243:1	125620672	125648817	D	Leucine-rich repeat-containing protein 8B {ECO:0000313|EMBL:JAB05908.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003482}  [Source:UniProtKB/TrEMBL;Acc:F7GPA1]
ENSCJAG00000012159	KNOWN_BY_PROJECTION	protein_coding	NKX3-2	chromosome:C_jacchus3.2.1:3:1:190850796:1	177856402	177860081	D	NK3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:951]
ENSCJAG00000001934	KNOWN	protein_coding	LRRC8C	chromosome:C_jacchus3.2.1:7:1:155834243:1	125691890	125793424	D	Leucine-rich repeat-containing protein 8C {ECO:0000313|EMBL:JAB15793.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003492}  [Source:UniProtKB/TrEMBL;Acc:F7GH23]
ENSCJAG00000001942	NOVEL	protein_coding	ENSCJAG00000001942	chromosome:C_jacchus3.2.1:7:1:155834243:1	125722684	125722996	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003497}  [Source:UniProtKB/TrEMBL;Acc:F7GH02]
ENSCJAG00000035386	NOVEL	protein_coding	ENSCJAG00000035386	chromosome:C_jacchus3.2.1:7:1:155834243:1	125815365	125816246	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048588}  [Source:UniProtKB/TrEMBL;Acc:F7EVR2]
ENSCJAG00000012136	KNOWN	protein_coding	RAB28	chromosome:C_jacchus3.2.1:3:1:190850796:1	177915922	178027170	D	Ras-related protein Rab-28 isoform 2 {ECO:0000313|EMBL:JAB04129.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022285}  [Source:UniProtKB/TrEMBL;Acc:F7BCD2]
ENSCJAG00000001919	KNOWN	protein_coding	LRRC8D	chromosome:C_jacchus3.2.1:7:1:155834243:1	125894214	126020153	D	Leucine-rich repeat-containing protein 8D {ECO:0000313|EMBL:JAB03504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003454}  [Source:UniProtKB/TrEMBL;Acc:F7GUR8]
ENSCJAG00000006054	KNOWN	protein_coding	KIDINS220	chromosome:C_jacchus3.2.1:14:1:108792865:1	99822756	99937079	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011261}  [Source:UniProtKB/TrEMBL;Acc:F7IN10]
ENSCJAG00000005439	KNOWN_BY_PROJECTION	protein_coding	CXorf23	chromosome:C_jacchus3.2.1:X:1:142054208:1	18259805	18305312	R	chromosome X open reading frame 23 [Source:HGNC Symbol;Acc:HGNC:27413]
ENSCJAG00000001897	KNOWN	protein_coding	ZNF326	chromosome:C_jacchus3.2.1:7:1:155834243:1	126075454	126109178	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003445}  [Source:UniProtKB/TrEMBL;Acc:F7GZQ9]
ENSCJAG00000005383	KNOWN_BY_PROJECTION	protein_coding	MAP7D2	chromosome:C_jacchus3.2.1:X:1:142054208:1	18361625	18474450	R	MAP7 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25899]
ENSCJAG00000006975	NOVEL	protein_coding	ENSCJAG00000006975	chromosome:C_jacchus3.2.1:2:1:204313951:1	36156478	36157154	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012917}  [Source:UniProtKB/TrEMBL;Acc:F6S1N8]
ENSCJAG00000001766	KNOWN	protein_coding	KHDRBS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	59993086	60631719	R	KH domain-containing, RNA-binding, signal transduction-associated protein 2 {ECO:0000313|EMBL:JAB16680.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003174}  [Source:UniProtKB/TrEMBL;Acc:F7CWI3]
ENSCJAG00000006982	KNOWN_BY_PROJECTION	protein_coding	PAIP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	36229553	36251386	D	poly(A) binding protein interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:17970]
ENSCJAG00000013832	KNOWN_BY_PROJECTION	protein_coding	TMIGD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	93727190	93746372	D	transmembrane and immunoglobulin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32431]
ENSCJAG00000012127	NOVEL	protein_coding	ENSCJAG00000012127	chromosome:C_jacchus3.2.1:3:1:190850796:1	178911948	178913423	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046889}  [Source:UniProtKB/TrEMBL;Acc:F7IK07]
ENSCJAG00000001759	KNOWN_BY_PROJECTION	protein_coding	LGSN	chromosome:C_jacchus3.2.1:4:1:171630274:1	61653423	61695201	R	lengsin, lens protein with glutamine synthetase domain [Source:HGNC Symbol;Acc:HGNC:21016]
ENSCJAG00000013830	NOVEL	protein_coding	ENSCJAG00000013830	chromosome:C_jacchus3.2.1:5:1:159171411:1	93752174	93753482	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025429}  [Source:UniProtKB/TrEMBL;Acc:F6W1B6]
ENSCJAG00000001758	NOVEL	pseudogene	ENSCJAG00000001758	chromosome:C_jacchus3.2.1:4:1:171630274:1	61789480	61790244	D	<no descrition>
ENSCJAG00000006997	KNOWN_BY_PROJECTION	protein_coding	SLC23A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	36249618	36264855	R	solute carrier family 23 (ascorbic acid transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10974]
ENSCJAG00000007807	KNOWN_BY_PROJECTION	protein_coding	RNF212B	chromosome:C_jacchus3.2.1:10:1:132174527:1	47291073	47328367	D	ring finger protein 212B [Source:HGNC Symbol;Acc:HGNC:20438]
ENSCJAG00000012690	KNOWN_BY_PROJECTION	protein_coding	RASAL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	103331349	103495779	R	RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
ENSCJAG00000013781	KNOWN_BY_PROJECTION	protein_coding	BLMH	chromosome:C_jacchus3.2.1:5:1:159171411:1	93772339	93820694	D	bleomycin hydrolase [Source:HGNC Symbol;Acc:HGNC:1059]
ENSCJAG00000001755	NOVEL	protein_coding	ENSCJAG00000001755	chromosome:C_jacchus3.2.1:4:1:171630274:1	61822151	61823653	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052108}  [Source:UniProtKB/TrEMBL;Acc:F7I2S7]
ENSCJAG00000001752	NOVEL	pseudogene	ENSCJAG00000001752	chromosome:C_jacchus3.2.1:4:1:171630274:1	61892468	61892894	R	<no descrition>
ENSCJAG00000001743	KNOWN	protein_coding	PTP4A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	61914928	61926347	D	Protein tyrosine phosphatase type IVA 1 {ECO:0000313|EMBL:JAB04728.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003132}  [Source:UniProtKB/TrEMBL;Acc:F7DW77]
ENSCJAG00000011549	KNOWN_BY_PROJECTION	protein_coding	ASCL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	128179621	128182050	D	achaete-scute family bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:739]
ENSCJAG00000007998	KNOWN_BY_PROJECTION	protein_coding	PPP1R3E	chromosome:C_jacchus3.2.1:10:1:132174527:1	47355754	47357100	R	protein phosphatase 1, regulatory subunit 3E [Source:HGNC Symbol;Acc:HGNC:14943]
ENSCJAG00000007539	KNOWN_BY_PROJECTION	protein_coding	GRIN3B	chromosome:C_jacchus3.2.1:22:1:49145316:1	713204	726373	D	glutamate receptor, ionotropic, N-methyl-D-aspartate 3B [Source:HGNC Symbol;Acc:HGNC:16768]
ENSCJAG00000018412	NOVEL	protein_coding	MA_M011_JSM5D2D1R	chromosome:C_jacchus3.2.1:11:1:130397257:1	128264170	128271474	D	Tyrosine hydroxylase isoform D2,8,9 (Predicted) {ECO:0000313|EMBL:ABZ80202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034115}  [Source:UniProtKB/TrEMBL;Acc:B0VXL5]
ENSCJAG00000007990	KNOWN	protein_coding	BCL2L2	chromosome:C_jacchus3.2.1:10:1:132174527:1	47361930	47366851	D	Bcl-2-like protein 2 {ECO:0000313|EMBL:JAB03392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014764}  [Source:UniProtKB/TrEMBL;Acc:F7IIN0]
ENSCJAG00000007541	KNOWN_BY_PROJECTION	protein_coding	TMEM259	chromosome:C_jacchus3.2.1:22:1:49145316:1	729863	732837	R	transmembrane protein 259 [Source:HGNC Symbol;Acc:HGNC:17039]
ENSCJAG00000012119	KNOWN	protein_coding	HS3ST1	chromosome:C_jacchus3.2.1:3:1:190850796:1	179995994	180027363	D	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F7CPI4]
ENSCJAG00000035804	KNOWN_BY_PROJECTION	protein_coding	INS-IGF2	chromosome:C_jacchus3.2.1:11:1:130397257:1	128273899	128288271	D	INS-IGF2 readthrough [Source:HGNC Symbol;Acc:HGNC:33527]
ENSCJAG00000007960	KNOWN	protein_coding	PABPN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	47374782	47380751	D	Polyadenylate-binding protein 2 {ECO:0000313|EMBL:JAB09910.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014752}  [Source:UniProtKB/TrEMBL;Acc:F7IKW7]
ENSCJAG00000001885	KNOWN_BY_PROJECTION	protein_coding	BARHL2	chromosome:C_jacchus3.2.1:7:1:155834243:1	126944558	126949762	R	BarH-like homeobox 2 [Source:HGNC Symbol;Acc:HGNC:954]
ENSCJAG00000012080	KNOWN_BY_PROJECTION	protein_coding	CLNK	chromosome:C_jacchus3.2.1:3:1:190850796:1	180765981	180987152	D	cytokine-dependent hematopoietic cell linker [Source:HGNC Symbol;Acc:HGNC:17438]
ENSCJAG00000018424	KNOWN_BY_PROJECTION	protein_coding	IGF2	chromosome:C_jacchus3.2.1:11:1:130397257:1	128286425	128304181	D	insulin-like growth factor 2 [Source:HGNC Symbol;Acc:HGNC:5466]
ENSCJAG00000013726	KNOWN	protein_coding	SLC6A4	chromosome:C_jacchus3.2.1:5:1:159171411:1	93833230	93873874	D	Transporter {ECO:0000256|RuleBase:RU003732}  [Source:UniProtKB/TrEMBL;Acc:F7BZJ9]
ENSCJAG00000001883	NOVEL	protein_coding	ENSCJAG00000001883	chromosome:C_jacchus3.2.1:7:1:155834243:1	127120793	127122276	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003376}  [Source:UniProtKB/TrEMBL;Acc:F7DV01]
ENSCJAG00000001880	NOVEL	pseudogene	ENSCJAG00000001880	chromosome:C_jacchus3.2.1:7:1:155834243:1	127128008	127128677	D	<no descrition>
ENSCJAG00000005371	NOVEL	protein_coding	ENSCJAG00000005371	chromosome:C_jacchus3.2.1:X:1:142054208:1	18489478	18497357	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009816}  [Source:UniProtKB/TrEMBL;Acc:F7FJW0]
ENSCJAG00000018419	NOVEL	protein_coding	ENSCJAG00000018419	chromosome:C_jacchus3.2.1:11:1:130397257:1	128289402	128295686	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034133}  [Source:UniProtKB/TrEMBL;Acc:F6XMX0]
ENSCJAG00000034748	NOVEL	protein_coding	ENSCJAG00000034748	chromosome:C_jacchus3.2.1:11:1:130397257:1	128304720	128305261	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047085}  [Source:UniProtKB/TrEMBL;Acc:F7I6L0]
ENSCJAG00000032809	NOVEL	pseudogene	ENSCJAG00000032809	chromosome:C_jacchus3.2.1:11:1:130397257:1	128440418	128440565	D	<no descrition>
ENSCJAG00000001855	KNOWN	protein_coding	ZNF644	chromosome:C_jacchus3.2.1:7:1:155834243:1	127139849	127247045	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003366}; Zinc finger protein 644 isoform 2 {ECO:0000313|EMBL:JAB29456.1}  [Source:UniProtKB/TrEMBL;Acc:F7DVL4]
ENSCJAG00000034115	NOVEL	pseudogene	ENSCJAG00000034115	chromosome:C_jacchus3.2.1:11:1:130397257:1	128447756	128447910	R	<no descrition>
ENSCJAG00000007549	KNOWN_BY_PROJECTION	protein_coding	ABCA7	chromosome:C_jacchus3.2.1:22:1:49145316:1	750268	782840	D	ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
ENSCJAG00000018476	NOVEL	protein_coding	ENSCJAG00000018476	chromosome:C_jacchus3.2.1:11:1:130397257:1	128476384	128499001	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034259}  [Source:UniProtKB/TrEMBL;Acc:F7BTQ3]
ENSCJAG00000007055	NOVEL	protein_coding	ENSCJAG00000007055	chromosome:C_jacchus3.2.1:2:1:204313951:1	36269933	36272598	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013101}  [Source:UniProtKB/TrEMBL;Acc:F6W3H3]
ENSCJAG00000001708	KNOWN	protein_coding	PHF3	chromosome:C_jacchus3.2.1:4:1:171630274:1	61981760	62055662	D	PHD finger protein 3 {ECO:0000313|EMBL:JAB05967.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003108}  [Source:UniProtKB/TrEMBL;Acc:F7EA95]
ENSCJAG00000018439	KNOWN_BY_PROJECTION	protein_coding	TNNT3	chromosome:C_jacchus3.2.1:11:1:130397257:1	128533073	128672629	R	troponin T type 3 (skeletal, fast) [Source:HGNC Symbol;Acc:HGNC:11950]
ENSCJAG00000003344	KNOWN_BY_PROJECTION	protein_coding	COL6A5	chromosome:C_jacchus3.2.1:17:1:74750902:1	45687522	45923773	R	collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:HGNC:26674]
ENSCJAG00000005239	KNOWN	protein_coding	RPS6KA3	chromosome:C_jacchus3.2.1:X:1:142054208:1	18513294	18633632	R	Ribosomal protein S6 kinase {ECO:0000256|PIRNR:PIRNR000606}  [Source:UniProtKB/TrEMBL;Acc:F7GWP8]
ENSCJAG00000003366	NOVEL	protein_coding	ENSCJAG00000003366	chromosome:C_jacchus3.2.1:17:1:74750902:1	45997675	46060751	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044458}  [Source:UniProtKB/TrEMBL;Acc:F7HC05]
ENSCJAG00000003369	NOVEL	protein_coding	ENSCJAG00000003369	chromosome:C_jacchus3.2.1:17:1:74750902:1	46068120	46167945	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045028}  [Source:UniProtKB/TrEMBL;Acc:F6TVK3]
ENSCJAG00000007915	KNOWN_BY_PROJECTION	protein_coding	SLC22A17	chromosome:C_jacchus3.2.1:10:1:132174527:1	47402276	47408733	R	solute carrier family 22, member 17 [Source:HGNC Symbol;Acc:HGNC:23095]
ENSCJAG00000018420	KNOWN_BY_PROJECTION	protein_coding	TNNI2	chromosome:C_jacchus3.2.1:11:1:130397257:1	128582089	128585868	R	troponin I type 2 (skeletal, fast) [Source:HGNC Symbol;Acc:HGNC:11946]
ENSCJAG00000018413	NOVEL	protein_coding	ENSCJAG00000018413	chromosome:C_jacchus3.2.1:11:1:130397257:1	128590431	128598336	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034119}  [Source:UniProtKB/TrEMBL;Acc:F6YAD2]
ENSCJAG00000013710	KNOWN	protein_coding	NSRP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	93889340	93956553	R	Nuclear speckle splicing regulatory protein 1 isoform 1 {ECO:0000313|EMBL:JAB01709.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025211}  [Source:UniProtKB/TrEMBL;Acc:F6YIN7]
ENSCJAG00000018407	NOVEL	protein_coding	ENSCJAG00000018407	chromosome:C_jacchus3.2.1:11:1:130397257:1	128673658	128683653	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034110}  [Source:UniProtKB/TrEMBL;Acc:F6YAL3]
ENSCJAG00000006037	KNOWN	protein_coding	ID2	chromosome:C_jacchus3.2.1:14:1:108792865:1	99975057	99977515	R	DNA-binding protein inhibitor ID-2 {ECO:0000313|EMBL:JAB05140.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011113}  [Source:UniProtKB/TrEMBL;Acc:F7I6I5]
ENSCJAG00000018403	KNOWN_BY_PROJECTION	protein_coding	IFITM10	chromosome:C_jacchus3.2.1:11:1:130397257:1	128686806	128702255	D	interferon induced transmembrane protein 10 [Source:HGNC Symbol;Acc:HGNC:40022]
ENSCJAG00000007666	KNOWN_BY_PROJECTION	protein_coding	POLR2E	chromosome:C_jacchus3.2.1:22:1:49145316:1	808065	814736	R	polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Source:HGNC Symbol;Acc:HGNC:9192]
ENSCJAG00000003376	KNOWN	protein_coding	CAPN7	chromosome:C_jacchus3.2.1:17:1:74750902:1	46168362	46214051	D	Calpain-7 {ECO:0000313|EMBL:JAB11342.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006186}  [Source:UniProtKB/TrEMBL;Acc:F7D1T2]
ENSCJAG00000031425	KNOWN_BY_PROJECTION	protein_coding	EYS	chromosome:C_jacchus3.2.1:4:1:171630274:1	62061698	63375031	R	eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21555]
ENSCJAG00000018375	NOVEL	protein_coding	ENSCJAG00000018375	chromosome:C_jacchus3.2.1:11:1:130397257:1	128771199	128886040	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034075}  [Source:UniProtKB/TrEMBL;Acc:F6ZBT3]
ENSCJAG00000001843	KNOWN_BY_PROJECTION	protein_coding	HFM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	127436181	127564504	R	HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:20193]
ENSCJAG00000007683	KNOWN_BY_PROJECTION	protein_coding	SBNO2	chromosome:C_jacchus3.2.1:22:1:49145316:1	826052	924785	R	strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
ENSCJAG00000032194	NOVEL	pseudogene	ENSCJAG00000032194	chromosome:C_jacchus3.2.1:5:1:159171411:1	93959069	93960513	D	<no descrition>
ENSCJAG00000007886	KNOWN_BY_PROJECTION	protein_coding	EFS	chromosome:C_jacchus3.2.1:10:1:132174527:1	47412914	47417086	R	embryonal Fyn-associated substrate [Source:HGNC Symbol;Acc:HGNC:16898]
ENSCJAG00000007874	KNOWN_BY_PROJECTION	protein_coding	IL25	chromosome:C_jacchus3.2.1:10:1:132174527:1	47429384	47432814	D	interleukin 25 [Source:HGNC Symbol;Acc:HGNC:13765]
ENSCJAG00000032207	NOVEL	protein_coding	ENSCJAG00000032207	chromosome:C_jacchus3.2.1:4:1:171630274:1	64139498	64140130	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029798}  [Source:UniProtKB/TrEMBL;Acc:F7I532]
ENSCJAG00000033507	NOVEL	pseudogene	ENSCJAG00000033507	chromosome:C_jacchus3.2.1:4:1:171630274:1	64724463	64724790	D	<no descrition>
ENSCJAG00000011224	KNOWN_BY_PROJECTION	protein_coding	PTGDS	chromosome:C_jacchus3.2.1:1:1:210400635:1	181103257	181105345	D	prostaglandin D2 synthase 21kDa (brain) [Source:HGNC Symbol;Acc:HGNC:9592]
ENSCJAG00000011293	KNOWN_BY_PROJECTION	protein_coding	WDR1	chromosome:C_jacchus3.2.1:3:1:190850796:1	181515502	181560293	D	WD repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12754]
ENSCJAG00000032593	NOVEL	protein_coding	ENSCJAG00000032593	chromosome:C_jacchus3.2.1:4:1:171630274:1	65300766	65302917	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047765}  [Source:UniProtKB/TrEMBL;Acc:F7E3C2]
ENSCJAG00000013688	KNOWN_BY_PROJECTION	protein_coding	EFCAB5	chromosome:C_jacchus3.2.1:5:1:159171411:1	93965267	94128816	R	EF-hand calcium binding domain 5 [Source:HGNC Symbol;Acc:HGNC:24801]
ENSCJAG00000034338	NOVEL	pseudogene	ENSCJAG00000034338	chromosome:C_jacchus3.2.1:1:1:210400635:1	181107410	181107978	D	<no descrition>
ENSCJAG00000010225	KNOWN	protein_coding	RNF144A	chromosome:C_jacchus3.2.1:14:1:108792865:1	101680577	101785452	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018832}  [Source:UniProtKB/TrEMBL;Acc:F7CXQ9]
ENSCJAG00000012803	KNOWN_BY_PROJECTION	protein_coding	C9orf142	chromosome:C_jacchus3.2.1:1:1:210400635:1	181121274	181122845	D	chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
ENSCJAG00000003408	KNOWN_BY_PROJECTION	protein_coding	SH3BP5	chromosome:C_jacchus3.2.1:17:1:74750902:1	46215850	46296179	R	SH3-domain binding protein 5 (BTK-associated) [Source:HGNC Symbol;Acc:HGNC:10827]
ENSCJAG00000018400	NOVEL	protein_coding	ENSCJAG00000018400	chromosome:C_jacchus3.2.1:11:1:130397257:1	128853395	128854063	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044120}  [Source:UniProtKB/TrEMBL;Acc:F7GKS0]
ENSCJAG00000003415	KNOWN	protein_coding	METTL6	chromosome:C_jacchus3.2.1:17:1:74750902:1	46357450	46385537	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006207}  [Source:UniProtKB/TrEMBL;Acc:F7H6M6]
ENSCJAG00000032234	NOVEL	pseudogene	ENSCJAG00000032234	chromosome:C_jacchus3.2.1:5:1:159171411:1	94160788	94163038	D	<no descrition>
ENSCJAG00000007530	KNOWN	protein_coding	NGDN	chromosome:C_jacchus3.2.1:10:1:132174527:1	47433139	47530751	D	Neuroguidin isoform 1 {ECO:0000313|EMBL:JAB06633.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014019}  [Source:UniProtKB/TrEMBL;Acc:F7I2L1]
ENSCJAG00000012814	KNOWN_BY_PROJECTION	protein_coding	CLIC3	chromosome:C_jacchus3.2.1:1:1:210400635:1	181123505	181125534	R	chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
ENSCJAG00000003419	KNOWN	protein_coding	EAF1	chromosome:C_jacchus3.2.1:17:1:74750902:1	46389266	46399815	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006226}  [Source:UniProtKB/TrEMBL;Acc:F7H1K5]
ENSCJAG00000007064	KNOWN	protein_coding	PROB1	chromosome:C_jacchus3.2.1:2:1:204313951:1	36274694	36277728	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045745}  [Source:UniProtKB/TrEMBL;Acc:F6SSI4]
ENSCJAG00000007068	KNOWN_BY_PROJECTION	protein_coding	SPATA24	chromosome:C_jacchus3.2.1:2:1:204313951:1	36279231	36288335	R	spermatogenesis associated 24 [Source:HGNC Symbol;Acc:HGNC:27322]
ENSCJAG00000013673	KNOWN_BY_PROJECTION	protein_coding	SSH2	chromosome:C_jacchus3.2.1:5:1:159171411:1	94355473	94433067	D	slingshot protein phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:30580]
ENSCJAG00000018367	KNOWN_BY_PROJECTION	protein_coding	DUSP8	chromosome:C_jacchus3.2.1:11:1:130397257:1	128905258	128915853	D	dual specificity phosphatase 8 [Source:HGNC Symbol;Acc:HGNC:3074]
ENSCJAG00000007083	KNOWN	protein_coding	DNAJC18	chromosome:C_jacchus3.2.1:2:1:204313951:1	36297012	36326357	R	DnaJ homolog subfamily C member 18 {ECO:0000313|EMBL:JAB02993.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013171}  [Source:UniProtKB/TrEMBL;Acc:F7CFT4]
ENSCJAG00000010219	KNOWN	protein_coding	RSAD2	chromosome:C_jacchus3.2.1:14:1:108792865:1	101823197	101845511	R	Radical S-adenosyl methionine domain-containing protein 2 {ECO:0000313|EMBL:JAB01854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018823}  [Source:UniProtKB/TrEMBL;Acc:F7CY27]
ENSCJAG00000018357	NOVEL	protein_coding	ENSCJAG00000018357	chromosome:C_jacchus3.2.1:11:1:130397257:1	129001894	129020964	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033993}  [Source:UniProtKB/TrEMBL;Acc:F6SF00]
ENSCJAG00000005494	KNOWN_BY_PROJECTION	protein_coding	MIDN	chromosome:C_jacchus3.2.1:22:1:49145316:1	936216	943431	D	midnolin [Source:HGNC Symbol;Acc:HGNC:16298]
ENSCJAG00000016897	NOVEL	protein_coding	ENSCJAG00000016897	chromosome:C_jacchus3.2.1:2:1:204313951:1	36356283	36356678	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031087}  [Source:UniProtKB/TrEMBL;Acc:F7HWC6]
ENSCJAG00000012851	KNOWN_BY_PROJECTION	protein_coding	FUT7	chromosome:C_jacchus3.2.1:1:1:210400635:1	181160055	181162603	R	fucosyltransferase 7 (alpha (1,3) fucosyltransferase) [Source:HGNC Symbol;Acc:HGNC:4018]
ENSCJAG00000016886	KNOWN_BY_PROJECTION	protein_coding	TMEM173	chromosome:C_jacchus3.2.1:2:1:204313951:1	36359667	36369447	R	transmembrane protein 173 [Source:HGNC Symbol;Acc:HGNC:27962]
ENSCJAG00000012858	NOVEL	pseudogene	ENSCJAG00000012858	chromosome:C_jacchus3.2.1:1:1:210400635:1	181164074	181164430	D	<no descrition>
ENSCJAG00000010214	KNOWN_BY_PROJECTION	protein_coding	CMPK2	chromosome:C_jacchus3.2.1:14:1:108792865:1	101858708	101873108	D	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:27015]
ENSCJAG00000012859	KNOWN	protein_coding	NPDC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181168370	181262294	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023602}  [Source:UniProtKB/TrEMBL;Acc:F7D6K2]
ENSCJAG00000004137	KNOWN	protein_coding	BAI3	chromosome:C_jacchus3.2.1:4:1:171630274:1	66820428	67597300	D	Brain-specific angiogenesis inhibitor 3 {ECO:0000313|EMBL:JAB18461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007553}  [Source:UniProtKB/TrEMBL;Acc:F6RIW2]
ENSCJAG00000016883	KNOWN	protein_coding	UBE2D2	chromosome:C_jacchus3.2.1:2:1:204313951:1	36430351	36509697	D	Ubiquitin-conjugating enzyme E2 D2 isoform 1 {ECO:0000313|EMBL:JAB07351.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031070}  [Source:UniProtKB/TrEMBL;Acc:F7HWE6]
ENSCJAG00000016877	KNOWN_BY_PROJECTION	protein_coding	CXXC5	chromosome:C_jacchus3.2.1:2:1:204313951:1	36566076	36573381	D	CXXC finger protein 5 [Source:HGNC Symbol;Acc:HGNC:26943]
ENSCJAG00000005504	KNOWN	protein_coding	CIRBP	chromosome:C_jacchus3.2.1:22:1:49145316:1	957260	962464	D	Cold-inducible RNA-binding protein {ECO:0000313|EMBL:JAB21151.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010093}  [Source:UniProtKB/TrEMBL;Acc:F7AB55]
ENSCJAG00000016848	KNOWN_BY_PROJECTION	protein_coding	PSD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	36695343	36729002	D	pleckstrin and Sec7 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:19092]
ENSCJAG00000034573	NOVEL	protein_coding	ENSCJAG00000034573	chromosome:C_jacchus3.2.1:14:1:108792865:1	101890082	101891769	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043326}  [Source:UniProtKB/TrEMBL;Acc:F7HSP3]
ENSCJAG00000018285	KNOWN_BY_PROJECTION	protein_coding	BRSK2	chromosome:C_jacchus3.2.1:11:1:130397257:1	129030333	129081417	R	BR serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11405]
ENSCJAG00000032393	NOVEL	protein_coding	ENSCJAG00000032393	chromosome:C_jacchus3.2.1:14:1:108792865:1	101948874	101996162	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043413}  [Source:UniProtKB/TrEMBL;Acc:F7IEZ8]
ENSCJAG00000003426	KNOWN	protein_coding	HACL1	chromosome:C_jacchus3.2.1:17:1:74750902:1	46407196	46553665	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045021}  [Source:UniProtKB/TrEMBL;Acc:F6U546]
ENSCJAG00000011593	NOVEL	pseudogene	ENSCJAG00000011593	chromosome:C_jacchus3.2.1:14:1:108792865:1	102747263	102747727	R	<no descrition>
ENSCJAG00000011595	KNOWN_BY_PROJECTION	protein_coding	SOX11	chromosome:C_jacchus3.2.1:14:1:108792865:1	103056089	103057435	R	SRY (sex determining region Y)-box 11 [Source:HGNC Symbol;Acc:HGNC:11191]
ENSCJAG00000007844	KNOWN	protein_coding	CMTM5	chromosome:C_jacchus3.2.1:10:1:132174527:1	47433225	47436221	D	CKLF-like MARVEL transmembrane domain-containing protein 5 isoform a {ECO:0000313|EMBL:JAB11972.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014577}  [Source:UniProtKB/TrEMBL;Acc:F7IDW7]
ENSCJAG00000011603	KNOWN_BY_PROJECTION	protein_coding	TSPAN32	chromosome:C_jacchus3.2.1:14:1:108792865:1	103150518	103161728	R	tetraspanin 32 [Source:HGNC Symbol;Acc:HGNC:13410]
ENSCJAG00000016833	KNOWN_BY_PROJECTION	protein_coding	NRG2	chromosome:C_jacchus3.2.1:2:1:204313951:1	36734374	36930772	R	neuregulin 2 [Source:HGNC Symbol;Acc:HGNC:7998]
ENSCJAG00000037121	KNOWN	protein_coding	ENTPD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	181176846	181183618	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023640}  [Source:UniProtKB/TrEMBL;Acc:F7HD80]
ENSCJAG00000032949	NOVEL	protein_coding	ENSCJAG00000032949	chromosome:C_jacchus3.2.1:14:1:108792865:1	104253354	104255453	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052091}  [Source:UniProtKB/TrEMBL;Acc:F7IEM2]
ENSCJAG00000005541	KNOWN	protein_coding	C19ORF24	chromosome:C_jacchus3.2.1:22:1:49145316:1	963333	967655	D	Putative membrane protein C19orf24 {ECO:0000313|EMBL:JAB36305.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010112}  [Source:UniProtKB/TrEMBL;Acc:F6YTU6]
ENSCJAG00000005546	KNOWN_BY_PROJECTION	protein_coding	EFNA2	chromosome:C_jacchus3.2.1:22:1:49145316:1	987344	994043	D	ephrin-A2 [Source:HGNC Symbol;Acc:HGNC:3222]
ENSCJAG00000016446	KNOWN_BY_PROJECTION	protein_coding	DCDC2C	chromosome:C_jacchus3.2.1:14:1:108792865:1	104985436	105014054	R	doublecortin domain containing 2C [Source:HGNC Symbol;Acc:HGNC:32696]
ENSCJAG00000012905	NOVEL	protein_coding	ENSCJAG00000012905	chromosome:C_jacchus3.2.1:1:1:210400635:1	181194196	181202247	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023662}  [Source:UniProtKB/TrEMBL;Acc:F7H2T5]
ENSCJAG00000004129	NOVEL	protein_coding	ENSCJAG00000004129	chromosome:C_jacchus3.2.1:4:1:171630274:1	67623071	67624036	D	<no descrition>
ENSCJAG00000035897	NOVEL	protein_coding	ENSCJAG00000035897	chromosome:C_jacchus3.2.1:14:1:108792865:1	105064077	105069509	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052256}  [Source:UniProtKB/TrEMBL;Acc:F7IJ48]
ENSCJAG00000012920	KNOWN_BY_PROJECTION	protein_coding	UAP1L1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181210907	181215917	D	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
ENSCJAG00000034623	NOVEL	pseudogene	ENSCJAG00000034623	chromosome:C_jacchus3.2.1:7:1:155834243:1	127589352	127590566	D	<no descrition>
ENSCJAG00000012934	KNOWN_BY_PROJECTION	protein_coding	MAN1B1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181221655	181239699	D	mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
ENSCJAG00000007663	KNOWN_BY_PROJECTION	protein_coding	MYH6	chromosome:C_jacchus3.2.1:10:1:132174527:1	47438382	47466209	R	myosin, heavy chain 6, cardiac muscle, alpha [Source:HGNC Symbol;Acc:HGNC:7576]
ENSCJAG00000019017	KNOWN_BY_PROJECTION	protein_coding	NRAP	chromosome:C_jacchus3.2.1:12:1:121768101:1	101252419	101327528	R	nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
ENSCJAG00000012981	KNOWN_BY_PROJECTION	protein_coding	GRIN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181260724	181300583	D	glutamate receptor, ionotropic, N-methyl D-aspartate 1 [Source:HGNC Symbol;Acc:HGNC:4584]
ENSCJAG00000001808	KNOWN	protein_coding	CDC7	chromosome:C_jacchus3.2.1:7:1:155834243:1	127643739	127668723	D	Cell division cycle 7-related protein kinase {ECO:0000313|EMBL:JAB09708.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003281}  [Source:UniProtKB/TrEMBL;Acc:F7G6F8]
ENSCJAG00000011937	KNOWN	protein_coding	TOLLIP	chromosome:C_jacchus3.2.1:11:1:130397257:1	129181997	129220331	D	Toll-interacting protein {ECO:0000313|EMBL:JAB04473.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021935}  [Source:UniProtKB/TrEMBL;Acc:F6PGK9]
ENSCJAG00000005556	KNOWN_BY_PROJECTION	protein_coding	MUM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	1051426	1071290	D	melanoma associated antigen (mutated) 1 [Source:HGNC Symbol;Acc:HGNC:29641]
ENSCJAG00000016447	KNOWN_BY_PROJECTION	protein_coding	ALLC	chromosome:C_jacchus3.2.1:14:1:108792865:1	105071997	105112628	R	allantoicase [Source:HGNC Symbol;Acc:HGNC:17377]
ENSCJAG00000013646	KNOWN	protein_coding	CORO6	chromosome:C_jacchus3.2.1:5:1:159171411:1	94441575	94448777	D	Coronin {ECO:0000256|RuleBase:RU280818}  [Source:UniProtKB/TrEMBL;Acc:F7CGH9]
ENSCJAG00000013075	KNOWN	protein_coding	NDOR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181278010	181351225	D	NADPH-dependent diflavin oxidoreductase 1 {ECO:0000256|HAMAP-Rule:MF_03178}  [Source:UniProtKB/TrEMBL;Acc:F7GND4]
ENSCJAG00000016825	KNOWN_BY_PROJECTION	protein_coding	PURA	chromosome:C_jacchus3.2.1:2:1:204313951:1	37002825	37006037	D	purine-rich element binding protein A [Source:HGNC Symbol;Acc:HGNC:9701]
ENSCJAG00000013623	KNOWN	protein_coding	ANKRD13B	chromosome:C_jacchus3.2.1:5:1:159171411:1	94449522	94456182	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025086}  [Source:UniProtKB/TrEMBL;Acc:F6XYJ2]
ENSCJAG00000016823	KNOWN	protein_coding	CYSTM1	chromosome:C_jacchus3.2.1:2:1:204313951:1	37095187	37143687	D	Cysteine-rich and transmembrane domain-containing protein 1 {ECO:0000313|EMBL:JAB21223.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030947}  [Source:UniProtKB/TrEMBL;Acc:F6WRA3]
ENSCJAG00000005609	KNOWN_BY_PROJECTION	protein_coding	DAZAP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	1073284	1132354	D	DAZ associated protein 1 [Source:HGNC Symbol;Acc:HGNC:2683]
ENSCJAG00000016815	KNOWN	protein_coding	PFDN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	37144595	37206525	R	Prefoldin subunit 1 {ECO:0000313|EMBL:JAB22825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030942}  [Source:UniProtKB/TrEMBL;Acc:F6WRG6]
ENSCJAG00000016803	KNOWN	protein_coding	HBEGF	chromosome:C_jacchus3.2.1:2:1:204313951:1	37238251	37252211	R	Proheparin-binding EGF-like growth factor {ECO:0000313|EMBL:JAB09333.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030929}  [Source:UniProtKB/TrEMBL;Acc:F6XDY5]
ENSCJAG00000016452	NOVEL	pseudogene	ENSCJAG00000016452	chromosome:C_jacchus3.2.1:14:1:108792865:1	105080791	105082943	R	<no descrition>
ENSCJAG00000013586	KNOWN_BY_PROJECTION	protein_coding	GIT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	94474450	94489696	D	G protein-coupled receptor kinase interacting ArfGAP 1 [Source:HGNC Symbol;Acc:HGNC:4272]
ENSCJAG00000013575	KNOWN_BY_PROJECTION	protein_coding	TP53I13	chromosome:C_jacchus3.2.1:5:1:159171411:1	94491284	94496250	R	tumor protein p53 inducible protein 13 [Source:HGNC Symbol;Acc:HGNC:25102]
ENSCJAG00000013574	KNOWN	protein_coding	ABHD15	chromosome:C_jacchus3.2.1:5:1:159171411:1	94497892	94503870	D	Abhydrolase domain-containing protein 15 {ECO:0000313|EMBL:JAB02537.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024953}  [Source:UniProtKB/TrEMBL;Acc:F6R386]
ENSCJAG00000016762	KNOWN_BY_PROJECTION	protein_coding	SLC4A9	chromosome:C_jacchus3.2.1:2:1:204313951:1	37266854	37282111	D	solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
ENSCJAG00000034704	NOVEL	protein_coding	ENSCJAG00000034704	chromosome:C_jacchus3.2.1:5:1:159171411:1	94502635	94503627	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045922}  [Source:UniProtKB/TrEMBL;Acc:F6TC70]
ENSCJAG00000004013	KNOWN_BY_PROJECTION	protein_coding	LMBRD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	67916116	68047467	R	LMBR1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23038]
ENSCJAG00000013516	KNOWN_BY_PROJECTION	protein_coding	TAOK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	94522918	94687806	R	TAO kinase 1 [Source:HGNC Symbol;Acc:HGNC:29259]
ENSCJAG00000001806	NOVEL	pseudogene	ENSCJAG00000001806	chromosome:C_jacchus3.2.1:7:1:155834243:1	127680271	127681191	R	<no descrition>
ENSCJAG00000013508	KNOWN	protein_coding	NUFIP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	94796425	94825045	D	Nuclear fragile X mental retardation-interacting protein 2 {ECO:0000313|EMBL:JAB06608.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024845}  [Source:UniProtKB/TrEMBL;Acc:F6TWH2]
ENSCJAG00000001778	KNOWN_BY_PROJECTION	protein_coding	TGFBR3	chromosome:C_jacchus3.2.1:7:1:155834243:1	127839285	128058594	R	transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:HGNC:11774]
ENSCJAG00000013501	KNOWN_BY_PROJECTION	protein_coding	CRYBA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	94831740	94839396	R	crystallin, beta A1 [Source:HGNC Symbol;Acc:HGNC:2394]
ENSCJAG00000011951	KNOWN_BY_PROJECTION	protein_coding	MUC5AC	chromosome:C_jacchus3.2.1:11:1:130397257:1	129236359	129426130	R	mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
ENSCJAG00000017507	KNOWN_BY_PROJECTION	protein_coding	BRDT	chromosome:C_jacchus3.2.1:7:1:155834243:1	128235428	128288541	D	bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
ENSCJAG00000012666	KNOWN_BY_PROJECTION	protein_coding	OAS2	chromosome:C_jacchus3.2.1:9:1:124281992:1	103338811	103380119	D	2'-5'-oligoadenylate synthetase 2, 69/71kDa [Source:HGNC Symbol;Acc:HGNC:8087]
ENSCJAG00000016457	KNOWN_BY_PROJECTION	protein_coding	COLEC11	chromosome:C_jacchus3.2.1:14:1:108792865:1	105137690	105191734	R	collectin sub-family member 11 [Source:HGNC Symbol;Acc:HGNC:17213]
ENSCJAG00000000931	NOVEL	protein_coding	ENSCJAG00000000931	chromosome:C_jacchus3.2.1:7:1:155834243:1	128242777	128243749	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044737}  [Source:UniProtKB/TrEMBL;Acc:F7GJ84]
ENSCJAG00000017522	KNOWN	protein_coding	EPHX4	chromosome:C_jacchus3.2.1:7:1:155834243:1	128320434	128358626	D	Epoxide hydrolase 4 {ECO:0000313|EMBL:JAB05836.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032294}  [Source:UniProtKB/TrEMBL;Acc:F7D2S6]
ENSCJAG00000012688	NOVEL	pseudogene	ENSCJAG00000012688	chromosome:C_jacchus3.2.1:9:1:124281992:1	103412294	103412666	D	<no descrition>
ENSCJAG00000017530	KNOWN_BY_PROJECTION	protein_coding	BTBD8	chromosome:C_jacchus3.2.1:7:1:155834243:1	128386707	128456893	D	BTB (POZ) domain containing 8 [Source:HGNC Symbol;Acc:HGNC:21019]
ENSCJAG00000005596	KNOWN	protein_coding	GAMT	chromosome:C_jacchus3.2.1:22:1:49145316:1	1080559	1099230	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010221}  [Source:UniProtKB/TrEMBL;Acc:F6V9T1]
ENSCJAG00000037126	KNOWN_BY_PROJECTION	protein_coding	DTX1	chromosome:C_jacchus3.2.1:9:1:124281992:1	103416068	103456693	D	deltex 1, E3 ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:3060]
ENSCJAG00000012751	KNOWN_BY_PROJECTION	protein_coding	CCDC42B	chromosome:C_jacchus3.2.1:9:1:124281992:1	103510486	103520170	D	coiled-coil domain containing 42B [Source:HGNC Symbol;Acc:HGNC:37100]
ENSCJAG00000016462	NOVEL	protein_coding	ENSCJAG00000016462	chromosome:C_jacchus3.2.1:14:1:108792865:1	105198801	105204789	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040750}  [Source:UniProtKB/TrEMBL;Acc:F7IT97]
ENSCJAG00000005587	KNOWN_BY_PROJECTION	protein_coding	NDUFS7	chromosome:C_jacchus3.2.1:22:1:49145316:1	1083544	1093852	D	NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:HGNC:7714]
ENSCJAG00000010039	NOVEL	protein_coding	ENSCJAG00000010039	chromosome:C_jacchus3.2.1:9:1:124281992:1	103519338	103563936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045165}  [Source:UniProtKB/TrEMBL;Acc:F6RZH3]
ENSCJAG00000005632	NOVEL	protein_coding	ENSCJAG00000005632	chromosome:C_jacchus3.2.1:22:1:49145316:1	1135034	1137475	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010301}  [Source:UniProtKB/TrEMBL;Acc:F7AS95]
ENSCJAG00000035450	KNOWN_BY_PROJECTION	protein_coding	RNASEH1	chromosome:C_jacchus3.2.1:14:1:108792865:1	105221631	105231072	D	ribonuclease H1 [Source:HGNC Symbol;Acc:HGNC:18466]
ENSCJAG00000013014	KNOWN_BY_PROJECTION	protein_coding	LRRC26	chromosome:C_jacchus3.2.1:1:1:210400635:1	181300636	181453665	R	leucine rich repeat containing 26 [Source:HGNC Symbol;Acc:HGNC:31409]
ENSCJAG00000013022	KNOWN_BY_PROJECTION	protein_coding	TMEM210	chromosome:C_jacchus3.2.1:1:1:210400635:1	181302285	181303998	R	transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
ENSCJAG00000005365	NOVEL	protein_coding	ENSCJAG00000005365	chromosome:C_jacchus3.2.1:X:1:142054208:1	18560565	18561672	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009802}  [Source:UniProtKB/TrEMBL;Acc:F7FK10]
ENSCJAG00000005645	KNOWN_BY_PROJECTION	protein_coding	APC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	1149150	1168516	D	adenomatosis polyposis coli 2 [Source:HGNC Symbol;Acc:HGNC:24036]
ENSCJAG00000005220	KNOWN_BY_PROJECTION	protein_coding	CNKSR2	chromosome:C_jacchus3.2.1:X:1:142054208:1	19810331	20036040	D	connector enhancer of kinase suppressor of Ras 2 [Source:HGNC Symbol;Acc:HGNC:19701]
ENSCJAG00000013025	KNOWN_BY_PROJECTION	protein_coding	ANAPC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	181306840	181320561	R	anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
ENSCJAG00000000103	KNOWN_BY_PROJECTION	protein_coding	SLC2A9	chromosome:C_jacchus3.2.1:3:1:190850796:1	181594561	181847029	D	solute carrier family 2 (facilitated glucose transporter), member 9 [Source:HGNC Symbol;Acc:HGNC:13446]
ENSCJAG00000016624	KNOWN	protein_coding	EIF4EBP3	chromosome:C_jacchus3.2.1:2:1:204313951:1	37310644	37444820	D	Callithrix jacchus ankyrin repeat and KH domain containing 1 (ANKHD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001204919]
ENSCJAG00000007545	KNOWN_BY_PROJECTION	protein_coding	MYH7	chromosome:C_jacchus3.2.1:10:1:132174527:1	47471328	47495022	R	myosin, heavy chain 7, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:7577]
ENSCJAG00000005211	KNOWN_BY_PROJECTION	protein_coding	KLHL34	chromosome:C_jacchus3.2.1:X:1:142054208:1	20039450	20041240	R	kelch-like family member 34 [Source:HGNC Symbol;Acc:HGNC:26634]
ENSCJAG00000013053	KNOWN	protein_coding	SSNA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181320683	181322317	D	Sjoegren syndrome nuclear autoantigen 1 {ECO:0000313|EMBL:JAB06071.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023960}  [Source:UniProtKB/TrEMBL;Acc:F7F781]
ENSCJAG00000013061	KNOWN_BY_PROJECTION	protein_coding	TPRN	chromosome:C_jacchus3.2.1:1:1:210400635:1	181325687	181337790	R	taperin [Source:HGNC Symbol;Acc:HGNC:26894]
ENSCJAG00000009998	KNOWN_BY_PROJECTION	protein_coding	IQCD	chromosome:C_jacchus3.2.1:9:1:124281992:1	103572460	103604825	R	IQ motif containing D [Source:HGNC Symbol;Acc:HGNC:25168]
ENSCJAG00000013109	NOVEL	pseudogene	ENSCJAG00000013109	chromosome:C_jacchus3.2.1:1:1:210400635:1	181354734	181355797	R	<no descrition>
ENSCJAG00000013115	KNOWN_BY_PROJECTION	protein_coding	CYSRT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181360611	181361697	D	cysteine-rich tail protein 1 [Source:HGNC Symbol;Acc:HGNC:30529]
ENSCJAG00000005203	KNOWN	protein_coding	SMPX	chromosome:C_jacchus3.2.1:X:1:142054208:1	20104003	20157091	R	Small muscular protein {ECO:0000313|EMBL:JAB21051.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009508}  [Source:UniProtKB/TrEMBL;Acc:F7DME5]
ENSCJAG00000013117	KNOWN_BY_PROJECTION	protein_coding	SLC34A3	chromosome:C_jacchus3.2.1:1:1:210400635:1	181367747	181371110	D	solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
ENSCJAG00000011689	KNOWN_BY_PROJECTION	protein_coding	CHID1	chromosome:C_jacchus3.2.1:11:1:130397257:1	129475092	129683374	D	chitinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28474]
ENSCJAG00000013358	KNOWN_BY_PROJECTION	protein_coding	MYO18A	chromosome:C_jacchus3.2.1:5:1:159171411:1	94897708	95009527	D	myosin XVIIIA [Source:HGNC Symbol;Acc:HGNC:31104]
ENSCJAG00000009898	KNOWN_BY_PROJECTION	protein_coding	TPCN1	chromosome:C_jacchus3.2.1:9:1:124281992:1	103605187	103681056	D	two pore segment channel 1 [Source:HGNC Symbol;Acc:HGNC:18182]
ENSCJAG00000013124	NOVEL	protein_coding	ENSCJAG00000013124	chromosome:C_jacchus3.2.1:1:1:210400635:1	181379478	181380858	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024098}  [Source:UniProtKB/TrEMBL;Acc:F7FQV0]
ENSCJAG00000013129	KNOWN_BY_PROJECTION	protein_coding	FAM166A	chromosome:C_jacchus3.2.1:1:1:210400635:1	181380681	181384558	R	family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
ENSCJAG00000013136	KNOWN_BY_PROJECTION	protein_coding	C9orf173	chromosome:C_jacchus3.2.1:1:1:210400635:1	181388731	181390558	D	chromosome 9 open reading frame 173 [Source:HGNC Symbol;Acc:HGNC:37285]
ENSCJAG00000007906	KNOWN_BY_PROJECTION	protein_coding	ADI1	chromosome:C_jacchus3.2.1:14:1:108792865:1	105249516	105284754	D	acireductone dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:30576]
ENSCJAG00000013147	KNOWN_BY_PROJECTION	protein_coding	NELFB	chromosome:C_jacchus3.2.1:1:1:210400635:1	181392491	181408056	D	negative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]
ENSCJAG00000005665	KNOWN_BY_PROJECTION	protein_coding	PCSK4	chromosome:C_jacchus3.2.1:22:1:49145316:1	1180722	1190741	R	proprotein convertase subtilisin/kexin type 4 [Source:HGNC Symbol;Acc:HGNC:8746]
ENSCJAG00000017534	NOVEL	pseudogene	ENSCJAG00000017534	chromosome:C_jacchus3.2.1:7:1:155834243:1	128421426	128422431	R	<no descrition>
ENSCJAG00000017540	KNOWN_BY_PROJECTION	protein_coding	KIAA1107	chromosome:C_jacchus3.2.1:7:1:155834243:1	128471870	128488808	D	KIAA1107 [Source:HGNC Symbol;Acc:HGNC:29192]
ENSCJAG00000011560	KNOWN_BY_PROJECTION	protein_coding	MUC6	chromosome:C_jacchus3.2.1:11:1:130397257:1	129484704	129511098	D	mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
ENSCJAG00000007867	KNOWN	protein_coding	TRAPPC12	chromosome:C_jacchus3.2.1:14:1:108792865:1	105295547	105413606	R	Trafficking protein particle complex subunit 12 {ECO:0000313|EMBL:JAB27039.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014621}  [Source:UniProtKB/TrEMBL;Acc:F7I4F4]
ENSCJAG00000017547	KNOWN_BY_PROJECTION	protein_coding	C1orf146	chromosome:C_jacchus3.2.1:7:1:155834243:1	128525728	128561762	D	chromosome 1 open reading frame 146 [Source:HGNC Symbol;Acc:HGNC:24032]
ENSCJAG00000005705	NOVEL	protein_coding	ENSCJAG00000005705	chromosome:C_jacchus3.2.1:22:1:49145316:1	1191489	1199661	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010463}  [Source:UniProtKB/TrEMBL;Acc:F7HNI8]
ENSCJAG00000013169	KNOWN	protein_coding	NRARP	chromosome:C_jacchus3.2.1:1:1:210400635:1	181436847	181438586	R	Notch-regulated ankyrin repeat-containing protein {ECO:0000313|EMBL:JAB05341.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024178}  [Source:UniProtKB/TrEMBL;Acc:F7HE43]
ENSCJAG00000013170	KNOWN_BY_PROJECTION	protein_coding	EXD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	181447453	181720262	R	exonuclease 3'-5' domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26023]
ENSCJAG00000005185	KNOWN_BY_PROJECTION	protein_coding	MBTPS2	chromosome:C_jacchus3.2.1:X:1:142054208:1	20256388	20304675	D	membrane-bound transcription factor peptidase, site 2 [Source:HGNC Symbol;Acc:HGNC:15455]
ENSCJAG00000007858	KNOWN_BY_PROJECTION	protein_coding	TSSC1	chromosome:C_jacchus3.2.1:14:1:108792865:1	105415356	105595962	D	tumor suppressing subtransferable candidate 1 [Source:HGNC Symbol;Acc:HGNC:12383]
ENSCJAG00000017552	KNOWN	protein_coding	GLMN	chromosome:C_jacchus3.2.1:7:1:155834243:1	128565826	128639822	R	Glomulin {ECO:0000313|EMBL:JAB13057.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032381}  [Source:UniProtKB/TrEMBL;Acc:F7FJH0]
ENSCJAG00000013196	KNOWN_BY_PROJECTION	protein_coding	NOXA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181548630	181559832	D	NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
ENSCJAG00000000107	KNOWN_BY_PROJECTION	protein_coding	OTOP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	181932452	181955751	R	otopetrin 1 [Source:HGNC Symbol;Acc:HGNC:19656]
ENSCJAG00000005182	NOVEL	pseudogene	ENSCJAG00000005182	chromosome:C_jacchus3.2.1:X:1:142054208:1	20394652	20395159	R	<no descrition>
ENSCJAG00000033933	KNOWN_BY_PROJECTION	protein_coding	SMS	chromosome:C_jacchus3.2.1:X:1:142054208:1	20408652	20441873	D	spermine synthase [Source:HGNC Symbol;Acc:HGNC:11123]
ENSCJAG00000011607	KNOWN_BY_PROJECTION	protein_coding	AP2A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	129512844	129590251	R	adaptor-related protein complex 2, alpha 2 subunit [Source:HGNC Symbol;Acc:HGNC:562]
ENSCJAG00000005735	KNOWN_BY_PROJECTION	protein_coding	ADAMTSL5	chromosome:C_jacchus3.2.1:22:1:49145316:1	1207381	1216849	R	ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
ENSCJAG00000003495	NOVEL	pseudogene	ENSCJAG00000003495	chromosome:C_jacchus3.2.1:17:1:74750902:1	46510029	46511073	R	<no descrition>
ENSCJAG00000013211	KNOWN_BY_PROJECTION	protein_coding	ENTPD8	chromosome:C_jacchus3.2.1:1:1:210400635:1	181560047	181563509	R	ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
ENSCJAG00000000112	KNOWN_BY_PROJECTION	protein_coding	TMEM128	chromosome:C_jacchus3.2.1:3:1:190850796:1	181981670	181995320	R	transmembrane protein 128 [Source:HGNC Symbol;Acc:HGNC:28201]
ENSCJAG00000003498	KNOWN_BY_PROJECTION	protein_coding	BTD	chromosome:C_jacchus3.2.1:17:1:74750902:1	46553791	46601874	D	biotinidase [Source:HGNC Symbol;Acc:HGNC:1122]
ENSCJAG00000017591	KNOWN	protein_coding	RPAP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	128639812	128732721	D	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 {ECO:0000313|EMBL:JAB08441.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032426}  [Source:UniProtKB/TrEMBL;Acc:F7EDE7]
ENSCJAG00000000114	KNOWN_BY_PROJECTION	protein_coding	LYAR	chromosome:C_jacchus3.2.1:3:1:190850796:1	182013857	182042828	R	Ly1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]
ENSCJAG00000017609	KNOWN_BY_PROJECTION	protein_coding	GFI1	chromosome:C_jacchus3.2.1:7:1:155834243:1	128821324	128834713	R	growth factor independent 1 transcription repressor [Source:HGNC Symbol;Acc:HGNC:4237]
ENSCJAG00000003502	NOVEL	protein_coding	ENSCJAG00000003502	chromosome:C_jacchus3.2.1:17:1:74750902:1	46623949	46714697	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006426}  [Source:UniProtKB/TrEMBL;Acc:F7H6C7]
ENSCJAG00000003875	KNOWN_BY_PROJECTION	protein_coding	COL19A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	68119487	68479761	D	collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2196]
ENSCJAG00000005121	KNOWN_BY_PROJECTION	protein_coding	PHEX	chromosome:C_jacchus3.2.1:X:1:142054208:1	20476977	20713399	D	phosphate regulating endopeptidase homolog, X-linked [Source:HGNC Symbol;Acc:HGNC:8918]
ENSCJAG00000017619	KNOWN_BY_PROJECTION	protein_coding	EVI5	chromosome:C_jacchus3.2.1:7:1:155834243:1	128860253	129096216	R	ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
ENSCJAG00000003566	KNOWN_BY_PROJECTION	protein_coding	GALNT15	chromosome:C_jacchus3.2.1:17:1:74750902:1	47124655	47162655	D	polypeptide N-acetylgalactosaminyltransferase 15 [Source:HGNC Symbol;Acc:HGNC:21531]
ENSCJAG00000016613	KNOWN_BY_PROJECTION	protein_coding	SRA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	37445831	37452967	R	steroid receptor RNA activator 1 [Source:HGNC Symbol;Acc:HGNC:11281]
ENSCJAG00000000119	KNOWN_BY_PROJECTION	protein_coding	ZBTB49	chromosome:C_jacchus3.2.1:3:1:190850796:1	182042861	182076211	D	zinc finger and BTB domain containing 49 [Source:HGNC Symbol;Acc:HGNC:19883]
ENSCJAG00000003577	KNOWN	protein_coding	DPH3	chromosome:C_jacchus3.2.1:17:1:74750902:1	47201075	47205723	R	DPH3 homolog isoform 1 {ECO:0000313|EMBL:JAB10353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006486}  [Source:UniProtKB/TrEMBL;Acc:F7GJH5]
ENSCJAG00000013219	KNOWN	protein_coding	NSMF	chromosome:C_jacchus3.2.1:1:1:210400635:1	181572708	181668495	R	Nasal embryonic luteinizing hormone-releasing hormone factor isoform a {ECO:0000313|EMBL:JAB19265.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024484}  [Source:UniProtKB/TrEMBL;Acc:F7D767]
ENSCJAG00000003582	KNOWN	protein_coding	OXNAD1	chromosome:C_jacchus3.2.1:17:1:74750902:1	47206038	47248062	D	Oxidoreductase NAD-binding domain-containing protein 1 {ECO:0000313|EMBL:JAB18673.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006496}  [Source:UniProtKB/TrEMBL;Acc:F7G8W7]
ENSCJAG00000005119	NOVEL	pseudogene	ENSCJAG00000005119	chromosome:C_jacchus3.2.1:X:1:142054208:1	20743475	20744829	D	<no descrition>
ENSCJAG00000033693	NOVEL	protein_coding	ENSCJAG00000033693	chromosome:C_jacchus3.2.1:14:1:108792865:1	105785833	105786557	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046069}  [Source:UniProtKB/TrEMBL;Acc:F6ZB84]
ENSCJAG00000005108	KNOWN	protein_coding	PTCHD1	chromosome:C_jacchus3.2.1:X:1:142054208:1	21867913	21922914	D	Patched domain-containing protein 1 {ECO:0000313|EMBL:JAB46201.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009327}  [Source:UniProtKB/TrEMBL;Acc:F7D5U8]
ENSCJAG00000000128	KNOWN	protein_coding	D4S234E	chromosome:C_jacchus3.2.1:3:1:190850796:1	182164562	182197211	D	Neuron-specific protein family member 1 {ECO:0000313|EMBL:JAB02115.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000233}  [Source:UniProtKB/TrEMBL;Acc:F7GTE5]
ENSCJAG00000003585	KNOWN	protein_coding	RFTN1	chromosome:C_jacchus3.2.1:17:1:74750902:1	47265947	47500746	R	Raftlin {ECO:0000313|EMBL:JAB09077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006510}  [Source:UniProtKB/TrEMBL;Acc:F7FHA6]
ENSCJAG00000005061	KNOWN	protein_coding	PRDX4	chromosome:C_jacchus3.2.1:X:1:142054208:1	22238695	22258677	D	Peroxiredoxin-4 {ECO:0000313|EMBL:JAB28442.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009309}  [Source:UniProtKB/TrEMBL;Acc:F7DMZ6]
ENSCJAG00000007286	KNOWN_BY_PROJECTION	protein_coding	MYT1L	chromosome:C_jacchus3.2.1:14:1:108792865:1	106877811	107095424	D	myelin transcription factor 1-like [Source:HGNC Symbol;Acc:HGNC:7623]
ENSCJAG00000011754	KNOWN	protein_coding	CD151	chromosome:C_jacchus3.2.1:11:1:130397257:1	129539798	129687708	R	CD151 antigen {ECO:0000313|EMBL:JAB10166.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021623}  [Source:UniProtKB/TrEMBL;Acc:F6RX70]
ENSCJAG00000003593	KNOWN_BY_PROJECTION	protein_coding	DAZL	chromosome:C_jacchus3.2.1:17:1:74750902:1	47572808	47583788	R	deleted in azoospermia-like [Source:HGNC Symbol;Acc:HGNC:2685]
ENSCJAG00000016553	KNOWN	protein_coding	APBB3	chromosome:C_jacchus3.2.1:2:1:204313951:1	37453658	37459764	R	Amyloid beta A4 protein-binding family B member 3 isoform d {ECO:0000313|EMBL:JAB14950.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030565}  [Source:UniProtKB/TrEMBL;Acc:F6W9E2]
ENSCJAG00000013348	KNOWN	protein_coding	PIPOX	chromosome:C_jacchus3.2.1:5:1:159171411:1	95026983	95039615	R	Peroxisomal sarcosine oxidase {ECO:0000313|EMBL:JAB11990.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024530}  [Source:UniProtKB/TrEMBL;Acc:F7GSN9]
ENSCJAG00000011724	KNOWN_BY_PROJECTION	protein_coding	TSPAN4	chromosome:C_jacchus3.2.1:11:1:130397257:1	129652907	129679750	R	tetraspanin 4 [Source:HGNC Symbol;Acc:HGNC:11859]
ENSCJAG00000013338	KNOWN_BY_PROJECTION	protein_coding	SEZ6	chromosome:C_jacchus3.2.1:5:1:159171411:1	95105861	95132725	D	seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
ENSCJAG00000005752	KNOWN_BY_PROJECTION	protein_coding	PLK5	chromosome:C_jacchus3.2.1:22:1:49145316:1	1242146	1252324	D	polo-like kinase 5 [Source:HGNC Symbol;Acc:HGNC:27001]
ENSCJAG00000009862	KNOWN	protein_coding	SLC8B1	chromosome:C_jacchus3.2.1:9:1:124281992:1	103683557	103724761	R	Sodium/potassium/calcium exchanger 6 {ECO:0000313|EMBL:JAB06953.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050397}  [Source:UniProtKB/TrEMBL;Acc:F7EYM5]
ENSCJAG00000035511	KNOWN_BY_PROJECTION	protein_coding	MEX3D	chromosome:C_jacchus3.2.1:22:1:49145316:1	1268654	1746643	R	mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734]
ENSCJAG00000011785	KNOWN_BY_PROJECTION	protein_coding	CRACR2B	chromosome:C_jacchus3.2.1:11:1:130397257:1	129690624	129878702	R	calcium release activated channel regulator 2B [Source:HGNC Symbol;Acc:HGNC:28703]
ENSCJAG00000007523	KNOWN_BY_PROJECTION	protein_coding	ZFHX2	chromosome:C_jacchus3.2.1:10:1:132174527:1	47576775	47590059	R	zinc finger homeobox 2 [Source:HGNC Symbol;Acc:HGNC:20152]
ENSCJAG00000007522	KNOWN	protein_coding	THTPA	chromosome:C_jacchus3.2.1:10:1:132174527:1	47613880	47617725	D	Thiamine-triphosphatase {ECO:0000256|PIRNR:PIRNR036561}  [Source:UniProtKB/TrEMBL;Acc:F7IH66]
ENSCJAG00000011807	KNOWN_BY_PROJECTION	protein_coding	PNPLA2	chromosome:C_jacchus3.2.1:11:1:130397257:1	129696091	129762083	R	patatin-like phospholipase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30802]
ENSCJAG00000003599	KNOWN_BY_PROJECTION	protein_coding	PLCL2	chromosome:C_jacchus3.2.1:17:1:74750902:1	47823645	48017262	D	phospholipase C-like 2 [Source:HGNC Symbol;Acc:HGNC:9064]
ENSCJAG00000004642	KNOWN_BY_PROJECTION	protein_coding	TCF3	chromosome:C_jacchus3.2.1:22:1:49145316:1	1303645	1346546	R	transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:11633]
ENSCJAG00000017667	NOVEL	protein_coding	ENSCJAG00000017667	chromosome:C_jacchus3.2.1:7:1:155834243:1	129161374	129162576	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032556}  [Source:UniProtKB/TrEMBL;Acc:F7G9G6]
ENSCJAG00000011838	KNOWN	protein_coding	RPLP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	129712575	129715368	R	60S acidic ribosomal protein P2 {ECO:0000313|EMBL:JAB14148.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021730}  [Source:UniProtKB/TrEMBL;Acc:F6U184]
ENSCJAG00000031589	NOVEL	protein_coding	ENSCJAG00000031589	chromosome:C_jacchus3.2.1:7:1:155834243:1	129164141	129165235	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047599}  [Source:UniProtKB/TrEMBL;Acc:F7DNH9]
ENSCJAG00000000139	KNOWN_BY_PROJECTION	protein_coding	STX18	chromosome:C_jacchus3.2.1:3:1:190850796:1	182197672	182247674	R	syntaxin 18 [Source:HGNC Symbol;Acc:HGNC:15942]
ENSCJAG00000032181	NOVEL	protein_coding	ENSCJAG00000032181	chromosome:C_jacchus3.2.1:7:1:155834243:1	129220435	129221798	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051966}  [Source:UniProtKB/TrEMBL;Acc:F6ZE03]
ENSCJAG00000021557	NOVEL	pseudogene	ENSCJAG00000021557	chromosome:C_jacchus3.2.1:7:1:155834243:1	129290639	129291512	R	<no descrition>
ENSCJAG00000003617	KNOWN	protein_coding	TBC1D5	chromosome:C_jacchus3.2.1:17:1:74750902:1	48095639	48594461	R	TBC1 domain family member 5 isoform a {ECO:0000313|EMBL:JAB18210.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006582}  [Source:UniProtKB/TrEMBL;Acc:F7DXW3]
ENSCJAG00000017673	NOVEL	protein_coding	ENSCJAG00000017673	chromosome:C_jacchus3.2.1:7:1:155834243:1	129294531	129304923	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028315}  [Source:UniProtKB/TrEMBL;Acc:F7BQL6]
ENSCJAG00000007486	KNOWN_BY_PROJECTION	protein_coding	AP1G2	chromosome:C_jacchus3.2.1:10:1:132174527:1	47618149	47626141	R	adaptor-related protein complex 1, gamma 2 subunit [Source:HGNC Symbol;Acc:HGNC:556]
ENSCJAG00000011846	KNOWN_BY_PROJECTION	protein_coding	PIDD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	129721181	129727366	D	p53-induced death domain protein 1 [Source:HGNC Symbol;Acc:HGNC:16491]
ENSCJAG00000017678	KNOWN	protein_coding	FAM69A	chromosome:C_jacchus3.2.1:7:1:155834243:1	129295385	129433846	R	Protein FAM69A isoform 1 {ECO:0000313|EMBL:JAB06381.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032586}  [Source:UniProtKB/TrEMBL;Acc:F7FIM1]
ENSCJAG00000005001	KNOWN_BY_PROJECTION	protein_coding	ACOT9	chromosome:C_jacchus3.2.1:X:1:142054208:1	22277788	22324221	R	acyl-CoA thioesterase 9 [Source:HGNC Symbol;Acc:HGNC:17152]
ENSCJAG00000013252	KNOWN	protein_coding	PHF12	chromosome:C_jacchus3.2.1:5:1:159171411:1	95135942	95347418	D	PHD finger protein 12 isoform 1 {ECO:0000313|EMBL:JAB06149.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024481}  [Source:UniProtKB/TrEMBL;Acc:F7D795]
ENSCJAG00000021468	KNOWN_BY_PROJECTION	protein_coding	REXO1	chromosome:C_jacchus3.2.1:22:1:49145316:1	1421451	1637978	R	REX1, RNA exonuclease 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24616]
ENSCJAG00000003636	KNOWN_BY_PROJECTION	protein_coding	PPA1	chromosome:C_jacchus3.2.1:17:1:74750902:1	48795926	48797618	R	pyrophosphatase (inorganic) 1 [Source:HGNC Symbol;Acc:HGNC:9226]
ENSCJAG00000000149	NOVEL	protein_coding	ENSCJAG00000000149	chromosome:C_jacchus3.2.1:3:1:190850796:1	182283326	182283894	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047637}  [Source:UniProtKB/TrEMBL;Acc:F7GXK5]
ENSCJAG00000000152	NOVEL	pseudogene	ENSCJAG00000000152	chromosome:C_jacchus3.2.1:3:1:190850796:1	182446743	182447199	D	<no descrition>
ENSCJAG00000003642	NOVEL	pseudogene	ENSCJAG00000003642	chromosome:C_jacchus3.2.1:17:1:74750902:1	48801892	48802604	R	<no descrition>
ENSCJAG00000011280	KNOWN_BY_PROJECTION	protein_coding	MSX1	chromosome:C_jacchus3.2.1:3:1:190850796:1	182664086	182667754	D	msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]
ENSCJAG00000011895	KNOWN_BY_PROJECTION	protein_coding	CYTL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	182823401	182828044	R	cytokine-like 1 [Source:HGNC Symbol;Acc:HGNC:24435]
ENSCJAG00000011906	NOVEL	protein_coding	ENSCJAG00000011906	chromosome:C_jacchus3.2.1:3:1:190850796:1	182831587	182834729	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021860}  [Source:UniProtKB/TrEMBL;Acc:F6QYC6]
ENSCJAG00000003645	KNOWN	protein_coding	SATB1	chromosome:C_jacchus3.2.1:17:1:74750902:1	49261546	49352873	R	One cut domain family member {ECO:0000256|RuleBase:RU361129}  [Source:UniProtKB/TrEMBL;Acc:F7H0S8]
ENSCJAG00000013340	KNOWN	protein_coding	PNPLA7	chromosome:C_jacchus3.2.1:1:1:210400635:1	181584745	181660098	R	Patatin-like phospholipase domain-containing protein 7 isoform a {ECO:0000313|EMBL:JAB06157.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024627}  [Source:UniProtKB/TrEMBL;Acc:F6PZG7]
ENSCJAG00000011911	KNOWN_BY_PROJECTION	protein_coding	STK32B	chromosome:C_jacchus3.2.1:3:1:190850796:1	182865704	183320704	D	serine/threonine kinase 32B [Source:HGNC Symbol;Acc:HGNC:14217]
ENSCJAG00000010561	KNOWN_BY_PROJECTION	protein_coding	EVC2	chromosome:C_jacchus3.2.1:3:1:190850796:1	183455342	183557904	R	Ellis van Creveld syndrome 2 [Source:HGNC Symbol;Acc:HGNC:19747]
ENSCJAG00000018859	NOVEL	protein_coding	ENSCJAG00000018859	chromosome:C_jacchus3.2.1:17:1:74750902:1	49372838	49379959	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035018}  [Source:UniProtKB/TrEMBL;Acc:F7IG33]
ENSCJAG00000003679	NOVEL	pseudogene	ENSCJAG00000003679	chromosome:C_jacchus3.2.1:17:1:74750902:1	49979960	49980755	R	<no descrition>
ENSCJAG00000003767	KNOWN_BY_PROJECTION	protein_coding	COL9A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	68483243	68573072	R	collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2217]
ENSCJAG00000017687	KNOWN	protein_coding	MTF2	chromosome:C_jacchus3.2.1:7:1:155834243:1	129558525	129658453	D	Metal-response element-binding transcription factor 2 isoform a {ECO:0000313|EMBL:JAB09613.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032738}  [Source:UniProtKB/TrEMBL;Acc:F7GVR5]
ENSCJAG00000009859	KNOWN_BY_PROJECTION	protein_coding	PLBD2	chromosome:C_jacchus3.2.1:9:1:124281992:1	103745649	103776772	D	phospholipase B domain containing 2 [Source:HGNC Symbol;Acc:HGNC:27283]
ENSCJAG00000003681	KNOWN_BY_PROJECTION	protein_coding	KCNH8	chromosome:C_jacchus3.2.1:17:1:74750902:1	50054002	50389318	D	potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
ENSCJAG00000010606	KNOWN_BY_PROJECTION	protein_coding	EVC	chromosome:C_jacchus3.2.1:3:1:190850796:1	183568251	183666340	D	Ellis van Creveld syndrome [Source:HGNC Symbol;Acc:HGNC:3497]
ENSCJAG00000013243	KNOWN_BY_PROJECTION	protein_coding	DHRS13	chromosome:C_jacchus3.2.1:5:1:159171411:1	95185423	95190375	D	dehydrogenase/reductase (SDR family) member 13 [Source:HGNC Symbol;Acc:HGNC:28326]
ENSCJAG00000011869	KNOWN_BY_PROJECTION	protein_coding	SLC25A22	chromosome:C_jacchus3.2.1:11:1:130397257:1	129732003	129736490	D	solute carrier family 25 (mitochondrial carrier: glutamate), member 22 [Source:HGNC Symbol;Acc:HGNC:19954]
ENSCJAG00000012073	KNOWN_BY_PROJECTION	protein_coding	SCT	chromosome:C_jacchus3.2.1:11:1:130397257:1	129733743	129896441	D	secretin [Source:HGNC Symbol;Acc:HGNC:10607]
ENSCJAG00000011886	KNOWN	protein_coding	CEND1	chromosome:C_jacchus3.2.1:11:1:130397257:1	129739088	129740983	D	Cell cycle exit and neuronal differentiation protein 1 {ECO:0000313|EMBL:JAB07681.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021825}  [Source:UniProtKB/TrEMBL;Acc:F6RVN1]
ENSCJAG00000011567	KNOWN_BY_PROJECTION	protein_coding	PXDN	chromosome:C_jacchus3.2.1:14:1:108792865:1	107198757	107259049	D	peroxidasin [Source:HGNC Symbol;Acc:HGNC:14966]
ENSCJAG00000013210	KNOWN	protein_coding	FLOT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	95190459	95212117	D	Flotillin-2 {ECO:0000313|EMBL:JAB04847.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024298}  [Source:UniProtKB/TrEMBL;Acc:F7E667]
ENSCJAG00000021461	KNOWN_BY_PROJECTION	protein_coding	ATP8B3	chromosome:C_jacchus3.2.1:22:1:49145316:1	1481716	1509793	R	ATPase, aminophospholipid transporter, class I, type 8B, member 3 [Source:HGNC Symbol;Acc:HGNC:13535]
ENSCJAG00000011890	KNOWN_BY_PROJECTION	protein_coding	PDDC1	chromosome:C_jacchus3.2.1:11:1:130397257:1	129755077	129766507	D	Parkinson disease 7 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26616]
ENSCJAG00000034409	NOVEL	protein_coding	ENSCJAG00000034409	chromosome:C_jacchus3.2.1:2:1:204313951:1	37465742	37490132	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049695}  [Source:UniProtKB/TrEMBL;Acc:F6YE89]
ENSCJAG00000007476	KNOWN	protein_coding	JPH4	chromosome:C_jacchus3.2.1:10:1:132174527:1	47627685	47639213	R	Junctophilin-4 {ECO:0000313|EMBL:JAB21964.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013911}  [Source:UniProtKB/TrEMBL;Acc:F6XQE4]
ENSCJAG00000003700	KNOWN_BY_PROJECTION	protein_coding	EFHB	chromosome:C_jacchus3.2.1:17:1:74750902:1	50647487	50698798	R	EF-hand domain family, member B [Source:HGNC Symbol;Acc:HGNC:26330]
ENSCJAG00000019188	KNOWN_BY_PROJECTION	protein_coding	CASP7	chromosome:C_jacchus3.2.1:12:1:121768101:1	101346335	101382072	D	caspase 7, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:1508]
ENSCJAG00000016550	NOVEL	protein_coding	ENSCJAG00000016550	chromosome:C_jacchus3.2.1:2:1:204313951:1	37479526	37480610	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052487}  [Source:UniProtKB/TrEMBL;Acc:F7I020]
ENSCJAG00000016545	KNOWN	protein_coding	CD14	chromosome:C_jacchus3.2.1:2:1:204313951:1	37537433	37539126	R	Monocyte differentiation antigen CD14 {ECO:0000256|PIRNR:PIRNR002017}  [Source:UniProtKB/TrEMBL;Acc:F7B9N7]
ENSCJAG00000011912	KNOWN_BY_PROJECTION	protein_coding	TALDO1	chromosome:C_jacchus3.2.1:11:1:130397257:1	129769535	129787222	R	transaldolase 1 [Source:HGNC Symbol;Acc:HGNC:11559]
ENSCJAG00000009851	KNOWN_BY_PROJECTION	protein_coding	SDS	chromosome:C_jacchus3.2.1:9:1:124281992:1	103782301	103800208	R	serine dehydratase [Source:HGNC Symbol;Acc:HGNC:10691]
ENSCJAG00000016529	KNOWN	protein_coding	TMCO6	chromosome:C_jacchus3.2.1:2:1:204313951:1	37544683	37551233	D	Transmembrane and coiled-coil domain-containing protein 6 {ECO:0000313|EMBL:JAB10957.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030433}  [Source:UniProtKB/TrEMBL;Acc:F7BRB9]
ENSCJAG00000013200	KNOWN_BY_PROJECTION	protein_coding	ERAL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95230881	95239741	R	Era-like 12S mitochondrial rRNA chaperone 1 [Source:HGNC Symbol;Acc:HGNC:3424]
ENSCJAG00000013417	KNOWN	protein_coding	MRPL41	chromosome:C_jacchus3.2.1:1:1:210400635:1	181663064	181663800	D	39S ribosomal protein L41, mitochondrial {ECO:0000313|EMBL:JAB15230.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024643}  [Source:UniProtKB/TrEMBL;Acc:F6PNP8]
ENSCJAG00000013422	KNOWN_BY_PROJECTION	protein_coding	DPH7	chromosome:C_jacchus3.2.1:1:1:210400635:1	181667188	181679016	R	diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
ENSCJAG00000003725	NOVEL	protein_coding	ENSCJAG00000003725	chromosome:C_jacchus3.2.1:17:1:74750902:1	50699345	50700249	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006748}  [Source:UniProtKB/TrEMBL;Acc:F7EPZ8]
ENSCJAG00000004936	KNOWN	protein_coding	SAT1	chromosome:C_jacchus3.2.1:X:1:142054208:1	22362089	22365148	D	Diamine acetyltransferase 1 {ECO:0000313|EMBL:JAB14927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009118}  [Source:UniProtKB/TrEMBL;Acc:F7HNS3]
ENSCJAG00000017759	KNOWN_BY_PROJECTION	protein_coding	TMED5	chromosome:C_jacchus3.2.1:7:1:155834243:1	129636891	129662779	R	transmembrane emp24 protein transport domain containing 5 [Source:HGNC Symbol;Acc:HGNC:24251]
ENSCJAG00000003731	KNOWN	protein_coding	ENSCJAG00000003731	chromosome:C_jacchus3.2.1:17:1:74750902:1	50707409	50745283	D	Ras-related protein Rab-5A {ECO:0000313|EMBL:JAB09881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006755}  [Source:UniProtKB/TrEMBL;Acc:F7EPS6]
ENSCJAG00000011925	KNOWN_BY_PROJECTION	protein_coding	EPS8L2	chromosome:C_jacchus3.2.1:11:1:130397257:1	129804429	129822486	R	EPS8-like 2 [Source:HGNC Symbol;Acc:HGNC:21296]
ENSCJAG00000016525	KNOWN_BY_PROJECTION	protein_coding	NDUFA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	37551205	37553462	R	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa [Source:HGNC Symbol;Acc:HGNC:7685]
ENSCJAG00000013191	KNOWN	protein_coding	FAM222B	chromosome:C_jacchus3.2.1:5:1:159171411:1	95247630	95338710	D	Protein FAM222B {ECO:0000313|EMBL:JAB03122.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024229}  [Source:UniProtKB/TrEMBL;Acc:F7GEZ4]
ENSCJAG00000003735	KNOWN_BY_PROJECTION	protein_coding	PP2D1	chromosome:C_jacchus3.2.1:17:1:74750902:1	50745341	50770469	R	protein phosphatase 2C-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28406]
ENSCJAG00000013432	KNOWN_BY_PROJECTION	protein_coding	ZMYND19	chromosome:C_jacchus3.2.1:1:1:210400635:1	181682819	181689710	R	zinc finger, MYND-type containing 19 [Source:HGNC Symbol;Acc:HGNC:21146]
ENSCJAG00000010648	KNOWN_BY_PROJECTION	protein_coding	CRMP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	183680787	183769055	R	collapsin response mediator protein 1 [Source:HGNC Symbol;Acc:HGNC:2365]
ENSCJAG00000011579	KNOWN_BY_PROJECTION	protein_coding	TPO	chromosome:C_jacchus3.2.1:14:1:108792865:1	107331851	107429475	R	thyroid peroxidase [Source:HGNC Symbol;Acc:HGNC:12015]
ENSCJAG00000013439	KNOWN_BY_PROJECTION	protein_coding	ARRDC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181710744	181720082	D	arrestin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28633]
ENSCJAG00000013161	KNOWN_BY_PROJECTION	protein_coding	TRAF4	chromosome:C_jacchus3.2.1:5:1:159171411:1	95344366	95351620	R	TNF receptor-associated factor 4 [Source:HGNC Symbol;Acc:HGNC:12034]
ENSCJAG00000017774	KNOWN_BY_PROJECTION	protein_coding	CCDC18	chromosome:C_jacchus3.2.1:7:1:155834243:1	129662737	129774371	D	coiled-coil domain containing 18 [Source:HGNC Symbol;Acc:HGNC:30370]
ENSCJAG00000019191	KNOWN_BY_PROJECTION	protein_coding	PLEKHS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	101406369	101429763	D	pleckstrin homology domain containing, family S member 1 [Source:HGNC Symbol;Acc:HGNC:26285]
ENSCJAG00000003744	KNOWN_BY_PROJECTION	protein_coding	KAT2B	chromosome:C_jacchus3.2.1:17:1:74750902:1	50839925	50919071	D	K(lysine) acetyltransferase 2B [Source:HGNC Symbol;Acc:HGNC:8638]
ENSCJAG00000012199	KNOWN	protein_coding	HRAS	chromosome:C_jacchus3.2.1:11:1:130397257:1	129829644	129999932	D	GTPase HRas isoform 1 {ECO:0000313|EMBL:JAB10045.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045600}  [Source:UniProtKB/TrEMBL;Acc:F6R9P7]
ENSCJAG00000009818	KNOWN_BY_PROJECTION	protein_coding	SDSL	chromosome:C_jacchus3.2.1:9:1:124281992:1	103824723	103847883	D	serine dehydratase-like [Source:HGNC Symbol;Acc:HGNC:30404]
ENSCJAG00000013445	NOVEL	pseudogene	ENSCJAG00000013445	chromosome:C_jacchus3.2.1:1:1:210400635:1	181720400	181720891	R	<no descrition>
ENSCJAG00000019207	KNOWN	protein_coding	DCLRE1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	101487116	101504897	R	DNA cross-link repair 1A protein {ECO:0000313|EMBL:JAB10461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035670}  [Source:UniProtKB/TrEMBL;Acc:F7GXB3]
ENSCJAG00000007465	KNOWN_BY_PROJECTION	protein_coding	DHRS2	chromosome:C_jacchus3.2.1:10:1:132174527:1	47717402	47723885	D	dehydrogenase/reductase (SDR family) member 2 [Source:HGNC Symbol;Acc:HGNC:18349]
ENSCJAG00000007462	NOVEL	protein_coding	ENSCJAG00000007462	chromosome:C_jacchus3.2.1:10:1:132174527:1	48039755	48054683	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013866}  [Source:UniProtKB/TrEMBL;Acc:F7AVL2]
ENSCJAG00000009813	KNOWN	protein_coding	LHX5	chromosome:C_jacchus3.2.1:9:1:124281992:1	103874162	103883125	R	LIM/homeobox protein Lhx5 {ECO:0000313|EMBL:JAB18617.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017993}  [Source:UniProtKB/TrEMBL;Acc:F7I4X9]
ENSCJAG00000003760	KNOWN_BY_PROJECTION	protein_coding	SGOL1	chromosome:C_jacchus3.2.1:17:1:74750902:1	50924532	50938055	R	shugoshin-like 1 (S. pombe) [Source:HGNC Symbol;Acc:HGNC:25088]
ENSCJAG00000019217	KNOWN	protein_coding	NHLRC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	101505916	101560099	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035704}  [Source:UniProtKB/TrEMBL;Acc:F7GC24]
ENSCJAG00000007452	KNOWN	protein_coding	ENSCJAG00000007452	chromosome:C_jacchus3.2.1:10:1:132174527:1	48075615	48091719	D	Dehydrogenase/reductase SDR family member 4 {ECO:0000313|EMBL:JAB01789.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013859}  [Source:UniProtKB/TrEMBL;Acc:F7AWN7]
ENSCJAG00000013446	KNOWN_BY_PROJECTION	protein_coding	EHMT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	181822882	181953206	D	euchromatic histone-lysine N-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
ENSCJAG00000013137	KNOWN_BY_PROJECTION	protein_coding	NEK8	chromosome:C_jacchus3.2.1:5:1:159171411:1	95354340	95366498	R	NIMA-related kinase 8 [Source:HGNC Symbol;Acc:HGNC:13387]
ENSCJAG00000009798	KNOWN_BY_PROJECTION	protein_coding	RBM19	chromosome:C_jacchus3.2.1:9:1:124281992:1	104267239	104411567	R	RNA binding motif protein 19 [Source:HGNC Symbol;Acc:HGNC:29098]
ENSCJAG00000003701	KNOWN	protein_coding	FAM135A	chromosome:C_jacchus3.2.1:4:1:171630274:1	68689696	68843280	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006807}  [Source:UniProtKB/TrEMBL;Acc:F7DGS6]
ENSCJAG00000016366	KNOWN_BY_PROJECTION	protein_coding	IK	chromosome:C_jacchus3.2.1:2:1:204313951:1	37553585	37570317	D	IK cytokine, down-regulator of HLA II [Source:HGNC Symbol;Acc:HGNC:5958]
ENSCJAG00000003774	KNOWN	protein_coding	ZNF385D	chromosome:C_jacchus3.2.1:17:1:74750902:1	52073900	52410542	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006830}; Zinc finger protein 385D {ECO:0000313|EMBL:JAB19599.1}  [Source:UniProtKB/TrEMBL;Acc:F7DGA2]
ENSCJAG00000003777	NOVEL	protein_coding	ENSCJAG00000003777	chromosome:C_jacchus3.2.1:17:1:74750902:1	53754675	53755141	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006836}  [Source:UniProtKB/TrEMBL;Acc:F7DG73]
ENSCJAG00000013131	KNOWN	protein_coding	TLCD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95370111	95372604	D	TLC domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB19905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024107}  [Source:UniProtKB/TrEMBL;Acc:F7EJ17]
ENSCJAG00000010666	KNOWN_BY_PROJECTION	protein_coding	C4orf50	chromosome:C_jacchus3.2.1:3:1:190850796:1	183836157	183857491	R	chromosome 4 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:33766]
ENSCJAG00000033875	NOVEL	pseudogene	ENSCJAG00000033875	chromosome:C_jacchus3.2.1:X:1:142054208:1	22408467	22408696	R	<no descrition>
ENSCJAG00000011996	KNOWN	protein_coding	DEAF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	129838807	129883073	D	Deformed epidermal autoregulatory factor 1 homolog {ECO:0000313|EMBL:JAB14577.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022084}  [Source:UniProtKB/TrEMBL;Acc:F6ZU47]
ENSCJAG00000001433	NOVEL	protein_coding	ENSCJAG00000001433	chromosome:C_jacchus3.2.1:X:1:142054208:1	22415198	22415734	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002538}  [Source:UniProtKB/TrEMBL;Acc:F7INC5]
ENSCJAG00000003784	KNOWN	protein_coding	UBE2E1	chromosome:C_jacchus3.2.1:17:1:74750902:1	54457819	54543994	D	Ubiquitin-conjugating enzyme E2 E1 isoform 1 {ECO:0000313|EMBL:JAB03008.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006883}  [Source:UniProtKB/TrEMBL;Acc:F7HG67]
ENSCJAG00000004909	KNOWN	protein_coding	ENSCJAG00000004909	chromosome:C_jacchus3.2.1:X:1:142054208:1	22416974	22488328	R	Apolipoprotein O {ECO:0000313|EMBL:JAB01953.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008995}  [Source:UniProtKB/TrEMBL;Acc:F7I3B9]
ENSCJAG00000013126	NOVEL	protein_coding	ENSCJAG00000013126	chromosome:C_jacchus3.2.1:5:1:159171411:1	95373023	95378365	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024101}  [Source:UniProtKB/TrEMBL;Acc:F7EJ37]
ENSCJAG00000003797	KNOWN	protein_coding	NKIRAS1	chromosome:C_jacchus3.2.1:17:1:74750902:1	54544414	54565661	R	NF-kappa-B inhibitor-interacting Ras-like protein 1 {ECO:0000313|EMBL:JAB12567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006904}  [Source:UniProtKB/TrEMBL;Acc:F7H5N4]
ENSCJAG00000036983	KNOWN	protein_coding	ABHD17A	chromosome:C_jacchus3.2.1:22:1:49145316:1	1572063	1580883	R	Abhydrolase domain-containing protein FAM108A1 isoform 2 {ECO:0000313|EMBL:JAB11267.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039977}  [Source:UniProtKB/TrEMBL;Acc:F7H418]
ENSCJAG00000021477	KNOWN_BY_PROJECTION	protein_coding	ADAT3	chromosome:C_jacchus3.2.1:22:1:49145316:1	1605614	1607177	D	adenosine deaminase, tRNA-specific 3 [Source:HGNC Symbol;Acc:HGNC:25151]
ENSCJAG00000017815	KNOWN	protein_coding	DR1	chromosome:C_jacchus3.2.1:7:1:155834243:1	129854580	129873835	D	Protein Dr1 {ECO:0000313|EMBL:JAB06109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032866}  [Source:UniProtKB/TrEMBL;Acc:F7DH12]
ENSCJAG00000021478	KNOWN_BY_PROJECTION	protein_coding	SCAMP4	chromosome:C_jacchus3.2.1:22:1:49145316:1	1613221	1620567	D	secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:30385]
ENSCJAG00000021480	KNOWN	protein_coding	CSNK1G2	chromosome:C_jacchus3.2.1:22:1:49145316:1	1638363	1676064	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040002}  [Source:UniProtKB/TrEMBL;Acc:F7ILP7]
ENSCJAG00000013101	KNOWN_BY_PROJECTION	protein_coding	RAB34	chromosome:C_jacchus3.2.1:5:1:159171411:1	95380153	95384102	D	RAB34, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:16519]
ENSCJAG00000017821	KNOWN	protein_coding	FNBP1L	chromosome:C_jacchus3.2.1:7:1:155834243:1	129920062	130022499	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032959}  [Source:UniProtKB/TrEMBL;Acc:F7GJ26]
ENSCJAG00000010675	KNOWN	protein_coding	JAKMIP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	183902153	184079234	R	Janus kinase and microtubule-interacting protein 1 isoform 2 {ECO:0000313|EMBL:JAB26901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019795}  [Source:UniProtKB/TrEMBL;Acc:F6WD04]
ENSCJAG00000007382	KNOWN_BY_PROJECTION	protein_coding	LRRC16B	chromosome:C_jacchus3.2.1:10:1:132174527:1	48092746	48110636	D	leucine rich repeat containing 16B [Source:HGNC Symbol;Acc:HGNC:20272]
ENSCJAG00000013488	KNOWN_BY_PROJECTION	protein_coding	CACNA1B	chromosome:C_jacchus3.2.1:1:1:210400635:1	181987368	182254642	D	calcium channel, voltage-dependent, N type, alpha 1B subunit [Source:HGNC Symbol;Acc:HGNC:1389]
ENSCJAG00000016359	KNOWN_BY_PROJECTION	protein_coding	WDR55	chromosome:C_jacchus3.2.1:2:1:204313951:1	37573427	37581865	D	WD repeat domain 55 [Source:HGNC Symbol;Acc:HGNC:25971]
ENSCJAG00000011626	KNOWN_BY_PROJECTION	protein_coding	SNTG2	chromosome:C_jacchus3.2.1:14:1:108792865:1	107468610	107816527	R	syntrophin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:13741]
ENSCJAG00000016345	KNOWN_BY_PROJECTION	protein_coding	DND1	chromosome:C_jacchus3.2.1:2:1:204313951:1	37578597	37581601	R	DND microRNA-mediated repression inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:23799]
ENSCJAG00000003810	KNOWN_BY_PROJECTION	protein_coding	RPL15	chromosome:C_jacchus3.2.1:17:1:74750902:1	54574277	54577070	D	ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
ENSCJAG00000019235	NOVEL	pseudogene	ENSCJAG00000019235	chromosome:C_jacchus3.2.1:12:1:121768101:1	101566562	101566930	D	<no descrition>
ENSCJAG00000003827	NOVEL	protein_coding	ENSCJAG00000003827	chromosome:C_jacchus3.2.1:17:1:74750902:1	54586988	54615560	R	<no descrition>
ENSCJAG00000019237	KNOWN_BY_PROJECTION	protein_coding	ADRB1	chromosome:C_jacchus3.2.1:12:1:121768101:1	101711406	101712833	D	adrenoceptor beta 1 [Source:HGNC Symbol;Acc:HGNC:285]
ENSCJAG00000021486	KNOWN_BY_PROJECTION	protein_coding	BTBD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	1684823	2212728	R	BTB (POZ) domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15504]
ENSCJAG00000016282	KNOWN_BY_PROJECTION	protein_coding	HARS	chromosome:C_jacchus3.2.1:2:1:204313951:1	37582093	37601004	R	histidyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:4816]
ENSCJAG00000019239	KNOWN_BY_PROJECTION	protein_coding	CCDC186	chromosome:C_jacchus3.2.1:12:1:121768101:1	101789787	101843654	R	coiled-coil domain containing 186 [Source:HGNC Symbol;Acc:HGNC:24349]
ENSCJAG00000012048	KNOWN_BY_PROJECTION	protein_coding	DRD4	chromosome:C_jacchus3.2.1:11:1:130397257:1	129885218	129889025	R	dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]
ENSCJAG00000003844	KNOWN	protein_coding	NR1D2	chromosome:C_jacchus3.2.1:17:1:74750902:1	54640767	54675518	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007042}  [Source:UniProtKB/TrEMBL;Acc:F6PK46]
ENSCJAG00000007314	KNOWN_BY_PROJECTION	protein_coding	CPNE6	chromosome:C_jacchus3.2.1:10:1:132174527:1	48111779	48119802	D	copine VI (neuronal) [Source:HGNC Symbol;Acc:HGNC:2319]
ENSCJAG00000017873	KNOWN	protein_coding	BCAR3	chromosome:C_jacchus3.2.1:7:1:155834243:1	130029639	130178583	R	Breast cancer anti-estrogen resistance protein 3 isoform 1 {ECO:0000313|EMBL:JAB10326.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033024}  [Source:UniProtKB/TrEMBL;Acc:F6PL87]
ENSCJAG00000012075	KNOWN_BY_PROJECTION	protein_coding	CDHR5	chromosome:C_jacchus3.2.1:11:1:130397257:1	129898112	129908479	D	cadherin-related family member 5 [Source:HGNC Symbol;Acc:HGNC:7521]
ENSCJAG00000012124	KNOWN_BY_PROJECTION	protein_coding	IRF7	chromosome:C_jacchus3.2.1:11:1:130397257:1	129910338	129913389	D	interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]
ENSCJAG00000003881	NOVEL	protein_coding	ENSCJAG00000003881	chromosome:C_jacchus3.2.1:17:1:74750902:1	54778323	54779083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007057}  [Source:UniProtKB/TrEMBL;Acc:F6U4U0]
ENSCJAG00000032487	KNOWN_BY_PROJECTION	protein_coding	CXorf58	chromosome:C_jacchus3.2.1:X:1:142054208:1	22490992	22508370	D	chromosome X open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:26356]
ENSCJAG00000004901	KNOWN	protein_coding	KLHL15	chromosome:C_jacchus3.2.1:X:1:142054208:1	22573660	22627862	R	Kelch-like protein 15 {ECO:0000313|EMBL:JAB24216.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008951}  [Source:UniProtKB/TrEMBL;Acc:F7I5N2]
ENSCJAG00000016237	KNOWN	protein_coding	HARS2	chromosome:C_jacchus3.2.1:2:1:204313951:1	37600575	37609573	D	Putative histidine--tRNA ligase, mitochondrial {ECO:0000313|EMBL:JAB36479.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029954}  [Source:UniProtKB/TrEMBL;Acc:F7I7A3]
ENSCJAG00000004867	KNOWN	protein_coding	ENSCJAG00000004867	chromosome:C_jacchus3.2.1:X:1:142054208:1	22653205	22673807	D	Eukaryotic translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:JAB20875.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008940}  [Source:UniProtKB/TrEMBL;Acc:F7I5N8]
ENSCJAG00000003887	KNOWN	protein_coding	THRB	chromosome:C_jacchus3.2.1:17:1:74750902:1	54808945	55203775	R	Thyroid hormone receptor beta {ECO:0000313|EMBL:JAB04300.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007107}  [Source:UniProtKB/TrEMBL;Acc:F6S9K3]
ENSCJAG00000012144	KNOWN_BY_PROJECTION	protein_coding	PHRF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	129914091	129950668	R	PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:24351]
ENSCJAG00000013085	KNOWN_BY_PROJECTION	protein_coding	PROCA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95388849	95397448	D	protein interacting with cyclin A1 [Source:HGNC Symbol;Acc:HGNC:28600]
ENSCJAG00000000539	KNOWN_BY_PROJECTION	protein_coding	MKNK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	1732000	1746686	R	MAP kinase interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:7111]
ENSCJAG00000012171	KNOWN_BY_PROJECTION	protein_coding	RASSF7	chromosome:C_jacchus3.2.1:11:1:130397257:1	129967843	129970802	R	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 [Source:HGNC Symbol;Acc:HGNC:1166]
ENSCJAG00000004841	NOVEL	protein_coding	ZFX	chromosome:C_jacchus3.2.1:X:1:142054208:1	22745504	22810297	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008875}  [Source:UniProtKB/TrEMBL;Acc:F7IF81]
ENSCJAG00000017896	KNOWN_BY_PROJECTION	protein_coding	DNTTIP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	130383181	130395059	R	deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:24013]
ENSCJAG00000011637	NOVEL	protein_coding	ENSCJAG00000011637	chromosome:C_jacchus3.2.1:14:1:108792865:1	107675490	107676488	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021378}  [Source:UniProtKB/TrEMBL;Acc:F6TGW1]
ENSCJAG00000011641	NOVEL	pseudogene	ENSCJAG00000011641	chromosome:C_jacchus3.2.1:14:1:108792865:1	108051070	108051181	R	<no descrition>
ENSCJAG00000011644	KNOWN	protein_coding	TMEM18	chromosome:C_jacchus3.2.1:14:1:108792865:1	108065554	108072727	D	Transmembrane protein 18 {ECO:0000313|EMBL:JAB02703.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021393}  [Source:UniProtKB/TrEMBL;Acc:F6SW79]
ENSCJAG00000013565	NOVEL	pseudogene	ENSCJAG00000013565	chromosome:C_jacchus3.2.1:1:1:210400635:1	182002774	182003775	R	<no descrition>
ENSCJAG00000031483	NOVEL	protein_coding	ENSCJAG00000031483	chromosome:C_jacchus3.2.1:14:1:108792865:1	108375918	108376933	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050477}  [Source:UniProtKB/TrEMBL;Acc:F7H3L2]
ENSCJAG00000011653	KNOWN_BY_PROJECTION	protein_coding	FAM150B	chromosome:C_jacchus3.2.1:14:1:108792865:1	108493276	108501527	D	family with sequence similarity 150, member B [Source:HGNC Symbol;Acc:HGNC:27683]
ENSCJAG00000010642	NOVEL	protein_coding	ENSCJAG00000010642	chromosome:C_jacchus3.2.1:1:1:210400635:1	182277012	182282026	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019601}  [Source:UniProtKB/TrEMBL;Acc:F6PH28]
ENSCJAG00000012982	KNOWN	protein_coding	SUPT6H	chromosome:C_jacchus3.2.1:5:1:159171411:1	95398721	95482142	R	Transcription elongation factor SPT6 {ECO:0000313|EMBL:JAB08798.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023999}  [Source:UniProtKB/TrEMBL;Acc:F7E2I5]
ENSCJAG00000016231	KNOWN	protein_coding	ZMAT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	37610424	37617370	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029887}; Zinc finger matrin-type protein 2 {ECO:0000313|EMBL:JAB17423.1}  [Source:UniProtKB/TrEMBL;Acc:F7INW3]
ENSCJAG00000003698	KNOWN	protein_coding	C6ORF57	chromosome:C_jacchus3.2.1:4:1:171630274:1	68849805	68872446	D	UPF0369 protein C6orf57 {ECO:0000313|EMBL:JAB05840.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006713}  [Source:UniProtKB/TrEMBL;Acc:F7F3F8]
ENSCJAG00000006350	NOVEL	protein_coding	ENSCJAG00000006350	chromosome:C_jacchus3.2.1:1:1:210400635:1	182311540	182338322	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011740}  [Source:UniProtKB/TrEMBL;Acc:F7GCI2]
ENSCJAG00000019270	KNOWN_BY_PROJECTION	protein_coding	TDRD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	101855262	101901094	D	tudor domain containing 1 [Source:HGNC Symbol;Acc:HGNC:11712]
ENSCJAG00000011663	KNOWN	protein_coding	ACP1	chromosome:C_jacchus3.2.1:14:1:108792865:1	108503445	108518098	R	Low molecular weight phosphotyrosine protein phosphatase isoform b {ECO:0000313|EMBL:JAB11657.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049356}  [Source:UniProtKB/TrEMBL;Acc:F6YGV9]
ENSCJAG00000012183	KNOWN_BY_PROJECTION	protein_coding	LMNTD2	chromosome:C_jacchus3.2.1:11:1:130397257:1	129971800	129977583	D	lamin tail domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28561]
ENSCJAG00000017229	KNOWN	protein_coding	ENSCJAG00000017229	chromosome:C_jacchus3.2.1:1:1:210400635:1	182364654	182390311	R	Cat eye syndrome critical region protein 5 isoform 2 {ECO:0000313|EMBL:JAB10679.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031710}  [Source:UniProtKB/TrEMBL;Acc:F7I0P0]
ENSCJAG00000003659	KNOWN	protein_coding	SMAP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	68950657	69162507	D	Stromal membrane-associated protein 1 isoform A {ECO:0000313|EMBL:JAB29408.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006709}  [Source:UniProtKB/TrEMBL;Acc:F7F3I5]
ENSCJAG00000012196	NOVEL	pseudogene	ENSCJAG00000012196	chromosome:C_jacchus3.2.1:11:1:130397257:1	129973482	129974005	R	<no descrition>
ENSCJAG00000011968	KNOWN_BY_PROJECTION	protein_coding	LRRC56	chromosome:C_jacchus3.2.1:11:1:130397257:1	129978204	129992168	R	leucine rich repeat containing 56 [Source:HGNC Symbol;Acc:HGNC:25430]
ENSCJAG00000011675	KNOWN	protein_coding	SH3YL1	chromosome:C_jacchus3.2.1:14:1:108792865:1	108518934	108565192	D	SH3 domain-containing YSC84-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB04403.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021457}  [Source:UniProtKB/TrEMBL;Acc:F6RB94]
ENSCJAG00000016159	KNOWN	protein_coding	PCDHAC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	37709012	37938447	D	Protocadherin alpha-C2 isoform 1 {ECO:0000313|EMBL:JAB32834.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029855}  [Source:UniProtKB/TrEMBL;Acc:F7IR91]
ENSCJAG00000012214	KNOWN	protein_coding	RNH1	chromosome:C_jacchus3.2.1:11:1:130397257:1	130028568	130042786	D	Ribonuclease inhibitor {ECO:0000313|EMBL:JAB07991.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022448}  [Source:UniProtKB/TrEMBL;Acc:F7HNE6]
ENSCJAG00000003911	KNOWN_BY_PROJECTION	protein_coding	RARB	chromosome:C_jacchus3.2.1:17:1:74750902:1	55929061	56356863	D	retinoic acid receptor, beta [Source:HGNC Symbol;Acc:HGNC:9865]
ENSCJAG00000012252	KNOWN	protein_coding	PTDSS2	chromosome:C_jacchus3.2.1:11:1:130397257:1	130046437	130090749	R	Phosphatidylserine synthase 2 {ECO:0000313|EMBL:JAB07205.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047491}  [Source:UniProtKB/TrEMBL;Acc:F7IDD1]
ENSCJAG00000009744	KNOWN	protein_coding	TBX5	chromosome:C_jacchus3.2.1:9:1:124281992:1	104816617	104873050	R	T-box transcription factor TBX5 isoform 1 {ECO:0000313|EMBL:JAB04273.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017954}  [Source:UniProtKB/TrEMBL;Acc:F7I9Q2]
ENSCJAG00000003652	KNOWN_BY_PROJECTION	protein_coding	B3GAT2	chromosome:C_jacchus3.2.1:4:1:171630274:1	69159706	69279530	R	beta-1,3-glucuronyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:922]
ENSCJAG00000013051	KNOWN	protein_coding	MOB3A	chromosome:C_jacchus3.2.1:22:1:49145316:1	1768496	1773668	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023958}  [Source:UniProtKB/TrEMBL;Acc:F7F7S1]
ENSCJAG00000036223	NOVEL	pseudogene	ENSCJAG00000036223	chromosome:C_jacchus3.2.1:17:1:74750902:1	56176751	56177644	D	<no descrition>
ENSCJAG00000003958	NOVEL	protein_coding	ENSCJAG00000003958	chromosome:C_jacchus3.2.1:17:1:74750902:1	56280739	56281954	R	<no descrition>
ENSCJAG00000020459	KNOWN_BY_PROJECTION	protein_coding	ANO9	chromosome:C_jacchus3.2.1:11:1:130397257:1	130105733	130132266	D	anoctamin 9 [Source:HGNC Symbol;Acc:HGNC:20679]
ENSCJAG00000013059	KNOWN_BY_PROJECTION	protein_coding	IZUMO4	chromosome:C_jacchus3.2.1:22:1:49145316:1	1794566	1797052	D	IZUMO family member 4 [Source:HGNC Symbol;Acc:HGNC:26950]
ENSCJAG00000017899	KNOWN	protein_coding	GCLM	chromosome:C_jacchus3.2.1:7:1:155834243:1	130401404	130422729	R	Gamma-glutamylcysteine synthetase regulatory subunit {ECO:0000313|EMBL:ABA43001.1}; Glutamate--cysteine ligase regulatory subunit {ECO:0000313|EMBL:JAB08973.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033053}  [Source:UniProtKB/TrEMBL;Acc:Q2I825]
ENSCJAG00000017242	KNOWN_BY_PROJECTION	protein_coding	CECR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	182403740	182438492	R	cat eye syndrome chromosome region, candidate 1 [Source:HGNC Symbol;Acc:HGNC:1839]
ENSCJAG00000004838	NOVEL	protein_coding	ENSCJAG00000004838	chromosome:C_jacchus3.2.1:X:1:142054208:1	22905429	22908450	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008819}  [Source:UniProtKB/TrEMBL;Acc:F7IHJ9]
ENSCJAG00000034839	NOVEL	pseudogene	ENSCJAG00000034839	chromosome:C_jacchus3.2.1:X:1:142054208:1	22905550	22906246	D	<no descrition>
ENSCJAG00000004836	NOVEL	pseudogene	ENSCJAG00000004836	chromosome:C_jacchus3.2.1:X:1:142054208:1	22947194	22947452	D	<no descrition>
ENSCJAG00000004824	NOVEL	protein_coding	ENSCJAG00000004824	chromosome:C_jacchus3.2.1:X:1:142054208:1	22959404	22962666	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008806}  [Source:UniProtKB/TrEMBL;Acc:F7IHL0]
ENSCJAG00000020463	KNOWN_BY_PROJECTION	protein_coding	SIGIRR	chromosome:C_jacchus3.2.1:11:1:130397257:1	130138296	130143851	D	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain [Source:HGNC Symbol;Acc:HGNC:30575]
ENSCJAG00000020467	KNOWN_BY_PROJECTION	protein_coding	PKP3	chromosome:C_jacchus3.2.1:11:1:130397257:1	130142277	130152044	R	plakophilin 3 [Source:HGNC Symbol;Acc:HGNC:9025]
ENSCJAG00000004785	KNOWN	protein_coding	PDK3	chromosome:C_jacchus3.2.1:X:1:142054208:1	23074224	23159970	D	Pyruvate dehydrogenase kinase, isozyme 3 isoform 1 {ECO:0000313|EMBL:JAB08966.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008773}  [Source:UniProtKB/TrEMBL;Acc:F7HM68]
ENSCJAG00000007267	KNOWN	protein_coding	PCK2	chromosome:C_jacchus3.2.1:10:1:132174527:1	48137590	48147115	D	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform 1 {ECO:0000313|EMBL:JAB02186.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013614}  [Source:UniProtKB/TrEMBL;Acc:F7CT55]
ENSCJAG00000003963	KNOWN	protein_coding	TOP2B	chromosome:C_jacchus3.2.1:17:1:74750902:1	56356914	56425048	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043147}  [Source:UniProtKB/TrEMBL;Acc:F7IM81]
ENSCJAG00000017253	KNOWN_BY_PROJECTION	protein_coding	CECR2	chromosome:C_jacchus3.2.1:1:1:210400635:1	182683654	182763591	D	cat eye syndrome chromosome region, candidate 2 [Source:HGNC Symbol;Acc:HGNC:1840]
ENSCJAG00000017354	KNOWN	protein_coding	WFS1	chromosome:C_jacchus3.2.1:3:1:190850796:1	184157538	184192879	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031969}; Wolframin {ECO:0000313|EMBL:JAB11294.1}  [Source:UniProtKB/TrEMBL;Acc:F7HL14]
ENSCJAG00000020472	KNOWN_BY_PROJECTION	protein_coding	B4GALNT4	chromosome:C_jacchus3.2.1:11:1:130397257:1	130174087	130185190	R	beta-1,4-N-acetyl-galactosaminyl transferase 4 [Source:HGNC Symbol;Acc:HGNC:26315]
ENSCJAG00000013091	KNOWN_BY_PROJECTION	protein_coding	AP3D1	chromosome:C_jacchus3.2.1:22:1:49145316:1	1800304	1830612	R	adaptor-related protein complex 3, delta 1 subunit [Source:HGNC Symbol;Acc:HGNC:568]
ENSCJAG00000019284	KNOWN_BY_PROJECTION	protein_coding	VWA2	chromosome:C_jacchus3.2.1:12:1:121768101:1	101912754	101962040	D	von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
ENSCJAG00000017910	KNOWN_BY_PROJECTION	protein_coding	ABCA4	chromosome:C_jacchus3.2.1:7:1:155834243:1	130476172	130612443	R	ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
ENSCJAG00000011687	KNOWN_BY_PROJECTION	protein_coding	FAM110C	chromosome:C_jacchus3.2.1:14:1:108792865:1	108707545	108710636	D	family with sequence similarity 110, member C [Source:HGNC Symbol;Acc:HGNC:33340]
ENSCJAG00000011691	NOVEL	protein_coding	ENSCJAG00000011691	chromosome:C_jacchus3.2.1:14:1:108792865:1	108750830	108752403	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021471}  [Source:UniProtKB/TrEMBL;Acc:F6R0N4]
ENSCJAG00000017263	KNOWN	protein_coding	SLC25A18	chromosome:C_jacchus3.2.1:1:1:210400635:1	182790540	182799338	D	Mitochondrial glutamate carrier 2 {ECO:0000313|EMBL:JAB16990.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031780}  [Source:UniProtKB/TrEMBL;Acc:F7IRI7]
ENSCJAG00000011697	NOVEL	protein_coding	ENSCJAG00000011697	chromosome:C_jacchus3.2.1:14:1:108792865:1	108770192	108772518	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024095}  [Source:UniProtKB/TrEMBL;Acc:F7FQW6]
ENSCJAG00000017277	NOVEL	protein_coding	ENSCJAG00000017277	chromosome:C_jacchus3.2.1:1:1:210400635:1	182801161	182844089	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031788}  [Source:UniProtKB/TrEMBL;Acc:F7IRH8]
ENSCJAG00000012975	KNOWN	protein_coding	SDF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	95482510	95495671	D	Stromal cell-derived factor 2 {ECO:0000313|EMBL:JAB03615.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023801}  [Source:UniProtKB/TrEMBL;Acc:F7DM81]
ENSCJAG00000003635	KNOWN_BY_PROJECTION	protein_coding	OGFRL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	69574895	69588735	D	opioid growth factor receptor-like 1 [Source:HGNC Symbol;Acc:HGNC:21378]
ENSCJAG00000004756	KNOWN	protein_coding	PCYT1B	chromosome:C_jacchus3.2.1:X:1:142054208:1	23183209	23295417	R	Choline-phosphate cytidylyltransferase B isoform 2 {ECO:0000313|EMBL:JAB16195.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008708}  [Source:UniProtKB/TrEMBL;Acc:F7HSY2]
ENSCJAG00000017284	KNOWN_BY_PROJECTION	protein_coding	BCL2L13	chromosome:C_jacchus3.2.1:1:1:210400635:1	182844386	182947401	D	BCL2-like 13 (apoptosis facilitator) [Source:HGNC Symbol;Acc:HGNC:17164]
ENSCJAG00000013182	KNOWN_BY_PROJECTION	protein_coding	DOT1L	chromosome:C_jacchus3.2.1:22:1:49145316:1	1883312	1931026	D	DOT1-like histone H3K79 methyltransferase [Source:HGNC Symbol;Acc:HGNC:24948]
ENSCJAG00000005506	NOVEL	protein_coding	ENSCJAG00000005506	chromosome:C_jacchus3.2.1:11:1:130397257:1	130275470	130284474	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010052}  [Source:UniProtKB/TrEMBL;Acc:F7BDS0]
ENSCJAG00000012898	KNOWN_BY_PROJECTION	protein_coding	KIAA0100	chromosome:C_jacchus3.2.1:5:1:159171411:1	95498735	95532012	D	KIAA0100 [Source:HGNC Symbol;Acc:HGNC:28960]
ENSCJAG00000034981	NOVEL	protein_coding	ENSCJAG00000034981	chromosome:C_jacchus3.2.1:4:1:171630274:1	69823984	69824571	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047395}  [Source:UniProtKB/TrEMBL;Acc:F7HUJ1]
ENSCJAG00000005515	KNOWN_BY_PROJECTION	protein_coding	ATHL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	130287063	130292322	R	ATH1, acid trehalase-like 1 (yeast) [Source:HGNC Symbol;Acc:HGNC:26210]
ENSCJAG00000017336	KNOWN	protein_coding	PPP2R2C	chromosome:C_jacchus3.2.1:3:1:190850796:1	184212366	184468739	R	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256|RuleBase:RU331113}  [Source:UniProtKB/TrEMBL;Acc:F7GGL7]
ENSCJAG00000017316	KNOWN_BY_PROJECTION	protein_coding	MICAL3	chromosome:C_jacchus3.2.1:1:1:210400635:1	182891369	183229457	R	microtubule associated monooxygenase, calponin and LIM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24694]
ENSCJAG00000004031	NOVEL	protein_coding	ENSCJAG00000004031	chromosome:C_jacchus3.2.1:17:1:74750902:1	56459376	56460339	D	<no descrition>
ENSCJAG00000009716	KNOWN	protein_coding	TBX3	chromosome:C_jacchus3.2.1:9:1:124281992:1	105138609	105152970	R	T-box transcription factor TBX3 isoform 2 {ECO:0000313|EMBL:JAB09229.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017842}  [Source:UniProtKB/TrEMBL;Acc:F7HKU0]
ENSCJAG00000005581	KNOWN_BY_PROJECTION	protein_coding	NLRP6	chromosome:C_jacchus3.2.1:11:1:130397257:1	130296368	130304415	R	NLR family, pyrin domain containing 6 [Source:HGNC Symbol;Acc:HGNC:22944]
ENSCJAG00000016152	KNOWN_BY_PROJECTION	protein_coding	PCDHB2	chromosome:C_jacchus3.2.1:2:1:204313951:1	37978348	38164153	D	protocadherin beta 2 [Source:HGNC Symbol;Acc:HGNC:8687]
ENSCJAG00000009737	KNOWN_BY_PROJECTION	protein_coding	RIMS1	chromosome:C_jacchus3.2.1:4:1:171630274:1	70193403	70711280	D	regulating synaptic membrane exocytosis 1 [Source:HGNC Symbol;Acc:HGNC:17282]
ENSCJAG00000004039	KNOWN_BY_PROJECTION	protein_coding	NGLY1	chromosome:C_jacchus3.2.1:17:1:74750902:1	56474354	56545626	R	N-glycanase 1 [Source:HGNC Symbol;Acc:HGNC:17646]
ENSCJAG00000004743	KNOWN_BY_PROJECTION	protein_coding	POLA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	23312417	23637519	D	polymerase (DNA directed), alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]
ENSCJAG00000034872	NOVEL	protein_coding	ENSCJAG00000034872	chromosome:C_jacchus3.2.1:11:1:130397257:1	130325333	130327054	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042752}  [Source:UniProtKB/TrEMBL;Acc:F6V480]
ENSCJAG00000005254	NOVEL	protein_coding	ENSCJAG00000005254	chromosome:C_jacchus3.2.1:2:1:204313951:1	38088733	38135135	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009599}  [Source:UniProtKB/TrEMBL;Acc:F7GX64]
ENSCJAG00000017947	NOVEL	protein_coding	ENSCJAG00000017947	chromosome:C_jacchus3.2.1:2:1:204313951:1	38137064	38144796	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033130}  [Source:UniProtKB/TrEMBL;Acc:F6SLP0]
ENSCJAG00000016142	NOVEL	pseudogene	ENSCJAG00000016142	chromosome:C_jacchus3.2.1:2:1:204313951:1	38151850	38154519	D	<no descrition>
ENSCJAG00000017935	NOVEL	pseudogene	ENSCJAG00000017935	chromosome:C_jacchus3.2.1:2:1:204313951:1	38160443	38163277	D	<no descrition>
ENSCJAG00000023016	NOVEL	pseudogene	ENSCJAG00000023016	chromosome:C_jacchus3.2.1:2:1:204313951:1	38166182	38169262	D	<no descrition>
ENSCJAG00000012891	NOVEL	protein_coding	ENSCJAG00000012891	chromosome:C_jacchus3.2.1:5:1:159171411:1	95532890	95535464	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023624}  [Source:UniProtKB/TrEMBL;Acc:F7HII9]
ENSCJAG00000034178	NOVEL	pseudogene	ENSCJAG00000034178	chromosome:C_jacchus3.2.1:2:1:204313951:1	38175340	38178066	D	<no descrition>
ENSCJAG00000031434	KNOWN_BY_PROJECTION	protein_coding	PCDHB14	chromosome:C_jacchus3.2.1:2:1:204313951:1	38184394	38355565	D	protocadherin beta 14 [Source:HGNC Symbol;Acc:HGNC:8685]
ENSCJAG00000017948	KNOWN	protein_coding	TAF7	chromosome:C_jacchus3.2.1:2:1:204313951:1	38279503	38281859	R	Transcription initiation factor TFIID subunit 7 {ECO:0000313|EMBL:JAB08864.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033137}  [Source:UniProtKB/TrEMBL;Acc:F6SLI6]
ENSCJAG00000033046	NOVEL	pseudogene	ENSCJAG00000033046	chromosome:C_jacchus3.2.1:2:1:204313951:1	38307487	38309976	D	<no descrition>
ENSCJAG00000019289	KNOWN_BY_PROJECTION	protein_coding	AFAP1L2	chromosome:C_jacchus3.2.1:12:1:121768101:1	101965473	102085066	R	actin filament associated protein 1-like 2 [Source:HGNC Symbol;Acc:HGNC:25901]
ENSCJAG00000017965	NOVEL	pseudogene	ENSCJAG00000017965	chromosome:C_jacchus3.2.1:2:1:204313951:1	38337225	38339796	D	<no descrition>
ENSCJAG00000005613	KNOWN	protein_coding	PSMD13	chromosome:C_jacchus3.2.1:11:1:130397257:1	130327540	130345313	R	26S proteasome non-ATPase regulatory subunit 13 isoform 1 {ECO:0000313|EMBL:JAB20563.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041980}  [Source:UniProtKB/TrEMBL;Acc:F7G4L9]
ENSCJAG00000017952	NOVEL	protein_coding	ENSCJAG00000017952	chromosome:C_jacchus3.2.1:2:1:204313951:1	38351545	38394529	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033158}  [Source:UniProtKB/TrEMBL;Acc:F6SAV0]
ENSCJAG00000036751	KNOWN	protein_coding	PCDHGC4	chromosome:C_jacchus3.2.1:2:1:204313951:1	38435396	38469072	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033164}  [Source:UniProtKB/TrEMBL;Acc:F6SA99]
ENSCJAG00000012848	KNOWN_BY_PROJECTION	protein_coding	SPAG5	chromosome:C_jacchus3.2.1:5:1:159171411:1	95545017	95567448	D	sperm associated antigen 5 [Source:HGNC Symbol;Acc:HGNC:13452]
ENSCJAG00000017291	NOVEL	pseudogene	ENSCJAG00000017291	chromosome:C_jacchus3.2.1:1:1:210400635:1	182898389	182899132	R	<no descrition>
ENSCJAG00000004190	KNOWN_BY_PROJECTION	protein_coding	MAN2B2	chromosome:C_jacchus3.2.1:3:1:190850796:1	184482267	184531108	D	mannosidase, alpha, class 2B, member 2 [Source:HGNC Symbol;Acc:HGNC:29623]
ENSCJAG00000017295	KNOWN_BY_PROJECTION	protein_coding	BID	chromosome:C_jacchus3.2.1:1:1:210400635:1	182953799	182986433	R	BH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]
ENSCJAG00000017307	NOVEL	pseudogene	ENSCJAG00000017307	chromosome:C_jacchus3.2.1:1:1:210400635:1	182990262	182990469	D	<no descrition>
ENSCJAG00000013201	KNOWN	protein_coding	PLEKHJ1	chromosome:C_jacchus3.2.1:22:1:49145316:1	1935481	1938726	R	Pleckstrin homology domain-containing family J member 1 {ECO:0000313|EMBL:JAB02185.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024242}  [Source:UniProtKB/TrEMBL;Acc:F7G299]
ENSCJAG00000017356	KNOWN_BY_PROJECTION	protein_coding	PEX26	chromosome:C_jacchus3.2.1:1:1:210400635:1	183278336	183291526	D	peroxisomal biogenesis factor 26 [Source:HGNC Symbol;Acc:HGNC:22965]
ENSCJAG00000013206	KNOWN_BY_PROJECTION	protein_coding	SF3A2	chromosome:C_jacchus3.2.1:22:1:49145316:1	1939210	1952524	D	splicing factor 3a, subunit 2, 66kDa [Source:HGNC Symbol;Acc:HGNC:10766]
ENSCJAG00000017386	KNOWN	protein_coding	TUBA8	chromosome:C_jacchus3.2.1:1:1:210400635:1	183316734	183325502	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032035}  [Source:UniProtKB/TrEMBL;Acc:F7HHU0]
ENSCJAG00000004087	KNOWN	protein_coding	OXSM	chromosome:C_jacchus3.2.1:17:1:74750902:1	56546518	56550090	D	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial {ECO:0000256|PIRNR:PIRNR000447}  [Source:UniProtKB/TrEMBL;Acc:F6PH70]
ENSCJAG00000005639	KNOWN_BY_PROJECTION	protein_coding	SIRT3	chromosome:C_jacchus3.2.1:11:1:130397257:1	130345664	130362846	D	sirtuin 3 [Source:HGNC Symbol;Acc:HGNC:14931]
ENSCJAG00000013212	KNOWN_BY_PROJECTION	protein_coding	AMH	chromosome:C_jacchus3.2.1:22:1:49145316:1	1952981	1955868	D	anti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]
ENSCJAG00000000007	NOVEL	protein_coding	ENSCJAG00000000007	chromosome:C_jacchus3.2.1:1:1:210400635:1	183402176	183413112	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000008}  [Source:UniProtKB/TrEMBL;Acc:F7DAH1]
ENSCJAG00000004109	KNOWN	protein_coding	LRRC3B	chromosome:C_jacchus3.2.1:17:1:74750902:1	57334245	57427097	D	Leucine-rich repeat-containing protein 3B {ECO:0000313|EMBL:JAB18747.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045496}  [Source:UniProtKB/TrEMBL;Acc:F6Q3B4]
ENSCJAG00000017973	KNOWN_BY_PROJECTION	protein_coding	DIAPH1	chromosome:C_jacchus3.2.1:2:1:204313951:1	38479091	38586328	R	diaphanous-related formin 1 [Source:HGNC Symbol;Acc:HGNC:2876]
ENSCJAG00000013217	KNOWN_BY_PROJECTION	protein_coding	JSRP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	1956056	1960379	R	junctional sarcoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:24963]
ENSCJAG00000009580	KNOWN_BY_PROJECTION	protein_coding	MED13L	chromosome:C_jacchus3.2.1:9:1:124281992:1	106521967	106791532	R	mediator complex subunit 13-like [Source:HGNC Symbol;Acc:HGNC:22962]
ENSCJAG00000013227	KNOWN	protein_coding	OAZ1	chromosome:C_jacchus3.2.1:22:1:49145316:1	1969249	1972338	D	Callithrix jacchus ornithine decarboxylase antizyme 1 (OAZ1), mRNA. [Source:RefSeq mRNA;Acc:NM_001289597]
ENSCJAG00000010390	KNOWN_BY_PROJECTION	protein_coding	C19orf35	chromosome:C_jacchus3.2.1:22:1:49145316:1	1972446	1977812	R	chromosome 19 open reading frame 35 [Source:HGNC Symbol;Acc:HGNC:24793]
ENSCJAG00000010391	KNOWN_BY_PROJECTION	protein_coding	LINGO3	chromosome:C_jacchus3.2.1:22:1:49145316:1	1983327	2001492	R	leucine rich repeat and Ig domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21206]
ENSCJAG00000010397	NOVEL	pseudogene	ENSCJAG00000010397	chromosome:C_jacchus3.2.1:22:1:49145316:1	1988737	1989096	D	<no descrition>
ENSCJAG00000001699	KNOWN	protein_coding	DGCR2	chromosome:C_jacchus3.2.1:1:1:210400635:1	183449069	183521791	R	Integral membrane protein DGCR2/IDD isoform 1 {ECO:0000313|EMBL:JAB03930.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003068}  [Source:UniProtKB/TrEMBL;Acc:F7G6W2]
ENSCJAG00000010404	KNOWN_BY_PROJECTION	protein_coding	LSM7	chromosome:C_jacchus3.2.1:22:1:49145316:1	2011653	2018524	R	LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:20470]
ENSCJAG00000004112	KNOWN_BY_PROJECTION	protein_coding	NEK10	chromosome:C_jacchus3.2.1:17:1:74750902:1	57777311	58041383	R	NIMA-related kinase 10 [Source:HGNC Symbol;Acc:HGNC:18592]
ENSCJAG00000010410	KNOWN_BY_PROJECTION	protein_coding	SPPL2B	chromosome:C_jacchus3.2.1:22:1:49145316:1	2018759	2040869	D	signal peptide peptidase like 2B [Source:HGNC Symbol;Acc:HGNC:30627]
ENSCJAG00000013546	KNOWN_BY_PROJECTION	protein_coding	TMPRSS9	chromosome:C_jacchus3.2.1:22:1:49145316:1	2085444	2117806	D	transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
ENSCJAG00000005651	KNOWN_BY_PROJECTION	protein_coding	RIC8A	chromosome:C_jacchus3.2.1:11:1:130397257:1	130367003	130373209	R	RIC8 guanine nucleotide exchange factor A [Source:HGNC Symbol;Acc:HGNC:29550]
ENSCJAG00000004737	KNOWN_BY_PROJECTION	protein_coding	ARX	chromosome:C_jacchus3.2.1:X:1:142054208:1	23646241	23657105	R	aristaless related homeobox [Source:HGNC Symbol;Acc:HGNC:18060]
ENSCJAG00000013577	KNOWN_BY_PROJECTION	protein_coding	TIMM13	chromosome:C_jacchus3.2.1:22:1:49145316:1	2122440	2122798	R	translocase of inner mitochondrial membrane 13 homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:11816]
ENSCJAG00000004734	NOVEL	pseudogene	ENSCJAG00000004734	chromosome:C_jacchus3.2.1:X:1:142054208:1	23876450	23876934	R	<no descrition>
ENSCJAG00000004722	KNOWN_BY_PROJECTION	protein_coding	MAGEB18	chromosome:C_jacchus3.2.1:X:1:142054208:1	24819684	24822037	D	melanoma antigen family B, 18 [Source:HGNC Symbol;Acc:HGNC:28515]
ENSCJAG00000034191	NOVEL	protein_coding	ENSCJAG00000034191	chromosome:C_jacchus3.2.1:X:1:142054208:1	24824075	24824941	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042609}  [Source:UniProtKB/TrEMBL;Acc:F7BQK0]
ENSCJAG00000013578	KNOWN_BY_PROJECTION	protein_coding	LMNB2	chromosome:C_jacchus3.2.1:22:1:49145316:1	2128483	2154013	R	lamin B2 [Source:HGNC Symbol;Acc:HGNC:6638]
ENSCJAG00000000895	KNOWN	protein_coding	BET1L	chromosome:C_jacchus3.2.1:11:1:130397257:1	130374656	130376551	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001519}  [Source:UniProtKB/TrEMBL;Acc:F7AF37]
ENSCJAG00000012766	KNOWN	protein_coding	ALDOC	chromosome:C_jacchus3.2.1:5:1:159171411:1	95568098	95572104	D	Fructose-bisphosphate aldolase C {ECO:0000313|EMBL:JAB05184.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023529}  [Source:UniProtKB/TrEMBL;Acc:F7I8Q1]
ENSCJAG00000007122	NOVEL	protein_coding	ENSCJAG00000007122	chromosome:C_jacchus3.2.1:X:1:142054208:1	24837918	24866014	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013225}  [Source:UniProtKB/TrEMBL;Acc:F6Z0K1]
ENSCJAG00000007111	NOVEL	pseudogene	ENSCJAG00000007111	chromosome:C_jacchus3.2.1:X:1:142054208:1	24904815	24905518	D	<no descrition>
ENSCJAG00000032445	NOVEL	protein_coding	ENSCJAG00000032445	chromosome:C_jacchus3.2.1:X:1:142054208:1	26164662	26166734	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051917}  [Source:UniProtKB/TrEMBL;Acc:F7BFK1]
ENSCJAG00000031892	NOVEL	protein_coding	ENSCJAG00000031892	chromosome:C_jacchus3.2.1:X:1:142054208:1	26449428	26451233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044088}  [Source:UniProtKB/TrEMBL;Acc:F7H231]
ENSCJAG00000018959	KNOWN_BY_PROJECTION	protein_coding	MAGEB10	chromosome:C_jacchus3.2.1:X:1:142054208:1	26515086	26526192	D	melanoma antigen family B, 10 [Source:HGNC Symbol;Acc:HGNC:25377]
ENSCJAG00000000901	KNOWN_BY_PROJECTION	protein_coding	ODF3	chromosome:C_jacchus3.2.1:11:1:130397257:1	130380704	130383763	R	outer dense fiber of sperm tails 3 [Source:HGNC Symbol;Acc:HGNC:19905]
ENSCJAG00000032582	NOVEL	protein_coding	ENSCJAG00000032582	chromosome:C_jacchus3.2.1:X:1:142054208:1	26533265	26536753	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046113}  [Source:UniProtKB/TrEMBL;Acc:F6X1H4]
ENSCJAG00000018958	NOVEL	pseudogene	ENSCJAG00000018958	chromosome:C_jacchus3.2.1:X:1:142054208:1	26569616	26570413	D	<no descrition>
ENSCJAG00000031576	KNOWN_BY_PROJECTION	protein_coding	DCAF8L1	chromosome:C_jacchus3.2.1:X:1:142054208:1	26707018	26708847	R	DDB1 and CUL4 associated factor 8-like 1 [Source:HGNC Symbol;Acc:HGNC:31810]
ENSCJAG00000013616	KNOWN_BY_PROJECTION	protein_coding	GADD45B	chromosome:C_jacchus3.2.1:22:1:49145316:1	2179627	2180839	D	growth arrest and DNA-damage-inducible, beta [Source:HGNC Symbol;Acc:HGNC:4096]
ENSCJAG00000007594	NOVEL	protein_coding	ENSCJAG00000007594	chromosome:C_jacchus3.2.1:X:1:142054208:1	27376707	27377241	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014098}  [Source:UniProtKB/TrEMBL;Acc:F7HKA7]
ENSCJAG00000007602	NOVEL	pseudogene	ENSCJAG00000007602	chromosome:C_jacchus3.2.1:X:1:142054208:1	27387090	27387500	R	<no descrition>
ENSCJAG00000013625	KNOWN	protein_coding	GNG7	chromosome:C_jacchus3.2.1:22:1:49145316:1	2215325	2219080	R	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F6Z244]
ENSCJAG00000007604	KNOWN_BY_PROJECTION	protein_coding	IL1RAPL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	28634070	28676142	D	interleukin 1 receptor accessory protein-like 1 [Source:HGNC Symbol;Acc:HGNC:5996]
ENSCJAG00000008873	NOVEL	protein_coding	ENSCJAG00000008873	chromosome:C_jacchus3.2.1:22:1:49145316:1	2300936	2302188	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016241}  [Source:UniProtKB/TrEMBL;Acc:F6XGQ2]
ENSCJAG00000004186	KNOWN	protein_coding	MRFAP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	184546076	184547617	D	MORF4 family-associated protein 1 isoform a {ECO:0000313|EMBL:JAB07889.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007594}  [Source:UniProtKB/TrEMBL;Acc:F6QM18]
ENSCJAG00000001679	KNOWN	protein_coding	DGCR14	chromosome:C_jacchus3.2.1:1:1:210400635:1	183536450	183547816	R	Protein DGCR14 {ECO:0000313|EMBL:JAB01766.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003017}  [Source:UniProtKB/TrEMBL;Acc:F7GQ36]
ENSCJAG00000018008	KNOWN	protein_coding	ARHGAP29	chromosome:C_jacchus3.2.1:7:1:155834243:1	130661195	130727004	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033318}  [Source:UniProtKB/TrEMBL;Acc:F6PJM0]
ENSCJAG00000008345	NOVEL	pseudogene	ENSCJAG00000008345	chromosome:C_jacchus3.2.1:22:1:49145316:1	2339325	2339859	D	<no descrition>
ENSCJAG00000022149	KNOWN_BY_PROJECTION	protein_coding	MAGEB1	chromosome:C_jacchus3.2.1:X:1:142054208:1	28930651	28965879	D	melanoma antigen family B, 1 [Source:HGNC Symbol;Acc:HGNC:6808]
ENSCJAG00000007214	KNOWN	protein_coding	DCAF11	chromosome:C_jacchus3.2.1:10:1:132174527:1	48157195	48294268	D	DDB1-and CUL4-associated factor 11 isoform 1 {ECO:0000313|EMBL:JAB07592.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013523}  [Source:UniProtKB/TrEMBL;Acc:F6ZXU2]
ENSCJAG00000004182	KNOWN	protein_coding	S100P	chromosome:C_jacchus3.2.1:3:1:190850796:1	184610741	184614652	D	Protein S100-P {ECO:0000313|EMBL:JAB25719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007589}  [Source:UniProtKB/TrEMBL;Acc:F6QNA3]
ENSCJAG00000018040	NOVEL	protein_coding	ENSCJAG00000018040	chromosome:C_jacchus3.2.1:7:1:155834243:1	130858471	130858797	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033326}  [Source:UniProtKB/TrEMBL;Acc:F6U4E8]
ENSCJAG00000018042	NOVEL	protein_coding	ENSCJAG00000018042	chromosome:C_jacchus3.2.1:7:1:155834243:1	130864819	130872145	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033340}  [Source:UniProtKB/TrEMBL;Acc:F6TSL9]
ENSCJAG00000023307	KNOWN	protein_coding	DIRAS1	chromosome:C_jacchus3.2.1:22:1:49145316:1	2339491	2456594	R	GTP-binding protein Di-Ras1 {ECO:0000313|EMBL:JAB03210.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041813}  [Source:UniProtKB/TrEMBL;Acc:F7E991]
ENSCJAG00000033763	NOVEL	pseudogene	ENSCJAG00000033763	chromosome:C_jacchus3.2.1:22:1:49145316:1	2364678	2365094	D	<no descrition>
ENSCJAG00000003562	NOVEL	protein_coding	ENSCJAG00000003562	chromosome:C_jacchus3.2.1:22:1:49145316:1	2447158	2448985	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7H0Z5]
ENSCJAG00000013605	KNOWN_BY_PROJECTION	protein_coding	OASL	scaffold:C_jacchus3.2.1:GL285375.1:1:56056:1	33423	53194	R	2'-5'-oligoadenylate synthetase-like [Source:HGNC Symbol;Acc:HGNC:8090]
ENSCJAG00000003551	KNOWN_BY_PROJECTION	protein_coding	SLC39A3	chromosome:C_jacchus3.2.1:22:1:49145316:1	2469521	2484013	R	solute carrier family 39 (zinc transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:17128]
ENSCJAG00000008445	NOVEL	protein_coding	ENSCJAG00000008445	scaffold:C_jacchus3.2.1:GL285341.1:1:36895:1	20965	27063	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015566}  [Source:UniProtKB/TrEMBL;Acc:H9KWI6]
ENSCJAG00000003539	KNOWN	protein_coding	SGTA	chromosome:C_jacchus3.2.1:22:1:49145316:1	2494698	2522821	R	Small glutamine-rich tetratricopeptide repeat-containing protein alpha {ECO:0000313|EMBL:JAB04433.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006430}  [Source:UniProtKB/TrEMBL;Acc:F7H696]
ENSCJAG00000001670	KNOWN_BY_PROJECTION	protein_coding	GSC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	183552274	183553558	R	goosecoid homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4613]
ENSCJAG00000033867	NOVEL	protein_coding	ENSCJAG00000033867	scaffold:C_jacchus3.2.1:ACFV01199545.1:1:2783:1	453	1089	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045589}  [Source:UniProtKB/TrEMBL;Acc:H9KY48]
ENSCJAG00000011995	NOVEL	protein_coding	ENSCJAG00000011995	scaffold:C_jacchus3.2.1:GL286243.1:1:84412:1	40884	46565	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022022}  [Source:UniProtKB/TrEMBL;Acc:H9KWV8]
ENSCJAG00000018054	KNOWN_BY_PROJECTION	protein_coding	ABCD3	chromosome:C_jacchus3.2.1:7:1:155834243:1	130962786	131053473	D	ATP-binding cassette, sub-family D (ALD), member 3 [Source:HGNC Symbol;Acc:HGNC:67]
ENSCJAG00000007211	KNOWN_BY_PROJECTION	protein_coding	FITM1	chromosome:C_jacchus3.2.1:10:1:132174527:1	48172383	48174856	D	fat storage-inducing transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:33714]
ENSCJAG00000007207	KNOWN	protein_coding	EMC9	chromosome:C_jacchus3.2.1:10:1:132174527:1	48180325	48183727	R	ER membrane protein complex subunit 9 {ECO:0000313|EMBL:JAB02575.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013392}  [Source:UniProtKB/TrEMBL;Acc:F6ZHH5]
ENSCJAG00000001657	KNOWN	protein_coding	SLC25A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	183602363	183606015	R	Tricarboxylate transport protein, mitochondrial isoform a {ECO:0000313|EMBL:JAB26640.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002973}  [Source:UniProtKB/TrEMBL;Acc:F7HPJ7]
ENSCJAG00000007167	KNOWN	protein_coding	ENSCJAG00000007167	chromosome:C_jacchus3.2.1:10:1:132174527:1	48185336	48189456	R	Proteasome activator complex subunit 2 {ECO:0000313|EMBL:JAB23652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013383}  [Source:UniProtKB/TrEMBL;Acc:F6ZZS4]
ENSCJAG00000033660	NOVEL	pseudogene	ENSCJAG00000033660	scaffold:C_jacchus3.2.1:GL288279.1:1:23886:1	13493	15250	D	<no descrition>
ENSCJAG00000033778	NOVEL	protein_coding	ENSCJAG00000033778	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	837441	838037	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046684}  [Source:UniProtKB/TrEMBL;Acc:H9KY73]
ENSCJAG00000015225	KNOWN_BY_PROJECTION	protein_coding	GTF2A2	scaffold:C_jacchus3.2.1:GL285463.1:1:30252:1	1891	11048	R	general transcription factor IIA, 2, 12kDa [Source:HGNC Symbol;Acc:HGNC:4647]
ENSCJAG00000034388	NOVEL	pseudogene	ENSCJAG00000034388	chromosome:C_jacchus3.2.1:1:1:210400635:1	183604505	183604634	D	<no descrition>
ENSCJAG00000009297	NOVEL	protein_coding	ENSCJAG00000009297	scaffold:C_jacchus3.2.1:ACFV01189605.1:1:10338:1	82	2647	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017031}  [Source:UniProtKB/TrEMBL;Acc:H9KWK7]
ENSCJAG00000018086	KNOWN	protein_coding	HDAC3	chromosome:C_jacchus3.2.1:2:1:204313951:1	38588621	38605923	R	Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}  [Source:UniProtKB/TrEMBL;Acc:F6RM17]
ENSCJAG00000003504	KNOWN_BY_PROJECTION	protein_coding	THOP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	2531914	2558314	D	thimet oligopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:11793]
ENSCJAG00000034415	NOVEL	protein_coding	ENSCJAG00000034415	chromosome:C_jacchus3.2.1:22:1:49145316:1	2543539	2544986	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051628}  [Source:UniProtKB/TrEMBL;Acc:F6ZZZ5]
ENSCJAG00000016646	NOVEL	protein_coding	ENSCJAG00000016646	chromosome:C_jacchus3.2.1:22:1:49145316:1	2544245	3559195	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046698}  [Source:UniProtKB/TrEMBL;Acc:F7IK37]
ENSCJAG00000019303	KNOWN_BY_PROJECTION	protein_coding	ABLIM1	chromosome:C_jacchus3.2.1:12:1:121768101:1	102113511	102375350	R	actin binding LIM protein 1 [Source:HGNC Symbol;Acc:HGNC:78]
ENSCJAG00000018105	NOVEL	protein_coding	ENSCJAG00000018105	chromosome:C_jacchus3.2.1:7:1:155834243:1	131091277	131097172	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033463}  [Source:UniProtKB/TrEMBL;Acc:F6QQV1]
ENSCJAG00000018108	KNOWN	protein_coding	F3	chromosome:C_jacchus3.2.1:7:1:155834243:1	131110938	131122425	R	Tissue factor {ECO:0000256|PIRNR:PIRNR002498}  [Source:UniProtKB/TrEMBL;Acc:F6QFD4]
ENSCJAG00000007073	KNOWN	protein_coding	ENSCJAG00000007073	chromosome:C_jacchus3.2.1:10:1:132174527:1	48189686	48204595	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013265}  [Source:UniProtKB/TrEMBL;Acc:F6XW71]
ENSCJAG00000001591	KNOWN	protein_coding	HIRA	chromosome:C_jacchus3.2.1:1:1:210400635:1	183734746	183856192	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002936}  [Source:UniProtKB/TrEMBL;Acc:F7HX96]
ENSCJAG00000018117	KNOWN	protein_coding	SLC44A3	chromosome:C_jacchus3.2.1:7:1:155834243:1	131422726	131495380	D	Choline transporter-like protein 3 isoform 1 {ECO:0000313|EMBL:JAB04170.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033514}  [Source:UniProtKB/TrEMBL;Acc:F6PI39]
ENSCJAG00000034239	NOVEL	pseudogene	ENSCJAG00000034239	chromosome:C_jacchus3.2.1:3:1:190850796:1	184622988	184623744	D	<no descrition>
ENSCJAG00000022013	KNOWN_BY_PROJECTION	protein_coding	MRFAP1L1	chromosome:C_jacchus3.2.1:3:1:190850796:1	184627168	184629308	R	Morf4 family associated protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:28796]
ENSCJAG00000038065	KNOWN_BY_PROJECTION	protein_coding	MAGEB2	chromosome:C_jacchus3.2.1:X:1:142054208:1	28930859	28935886	D	melanoma antigen family B, 2 [Source:HGNC Symbol;Acc:HGNC:6809]
ENSCJAG00000007615	KNOWN_BY_PROJECTION	protein_coding	NR0B1	chromosome:C_jacchus3.2.1:X:1:142054208:1	29012530	29017809	R	nuclear receptor subfamily 0, group B, member 1 [Source:HGNC Symbol;Acc:HGNC:7960]
ENSCJAG00000004174	KNOWN	protein_coding	KIAA0232	chromosome:C_jacchus3.2.1:3:1:190850796:1	184700362	184794967	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048035}; Uncharacterized protein KIAA0232 {ECO:0000313|EMBL:JAB04079.1}  [Source:UniProtKB/TrEMBL;Acc:F7G326]
ENSCJAG00000007627	KNOWN_BY_PROJECTION	protein_coding	CXorf21	chromosome:C_jacchus3.2.1:X:1:142054208:1	29233781	29252664	R	chromosome X open reading frame 21 [Source:HGNC Symbol;Acc:HGNC:25667]
ENSCJAG00000018091	KNOWN_BY_PROJECTION	protein_coding	RELL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	38606017	38609504	D	RELT-like 2 [Source:HGNC Symbol;Acc:HGNC:26902]
ENSCJAG00000003485	KNOWN_BY_PROJECTION	protein_coding	ZNF555	chromosome:C_jacchus3.2.1:22:1:49145316:1	2584220	2601321	D	zinc finger protein 555 [Source:HGNC Symbol;Acc:HGNC:28382]
ENSCJAG00000018093	KNOWN_BY_PROJECTION	protein_coding	FCHSD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	38610647	38622354	R	FCH and double SH3 domains 1 [Source:HGNC Symbol;Acc:HGNC:25463]
ENSCJAG00000003471	KNOWN_BY_PROJECTION	protein_coding	ZNF77	chromosome:C_jacchus3.2.1:22:1:49145316:1	2617004	2629961	R	zinc finger protein 77 [Source:HGNC Symbol;Acc:HGNC:13150]
ENSCJAG00000004141	KNOWN_BY_PROJECTION	protein_coding	SLC4A7	chromosome:C_jacchus3.2.1:17:1:74750902:1	58046298	58125172	R	solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
ENSCJAG00000000243	NOVEL	protein_coding	ENSCJAG00000000243	scaffold:C_jacchus3.2.1:GL285932.1:1:7296:1	5985	6384	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000398}  [Source:UniProtKB/TrEMBL;Acc:H9KVJ7]
ENSCJAG00000016149	KNOWN_BY_PROJECTION	protein_coding	AES	chromosome:C_jacchus3.2.1:22:1:49145316:1	2695093	2702830	R	amino-terminal enhancer of split [Source:HGNC Symbol;Acc:HGNC:307]
ENSCJAG00000011138	NOVEL	protein_coding	ENSCJAG00000011138	scaffold:C_jacchus3.2.1:ACFV01185851.1:1:9135:1	371	7001	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020545}  [Source:UniProtKB/TrEMBL;Acc:H9KWS3]
ENSCJAG00000016160	KNOWN	protein_coding	GNA11	chromosome:C_jacchus3.2.1:22:1:49145316:1	2732356	2763060	D	Guanine nucleotide-binding protein subunit alpha-11 {ECO:0000313|EMBL:JAB16635.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029759}  [Source:UniProtKB/TrEMBL;Acc:F7I7E6]
ENSCJAG00000037046	NOVEL	protein_coding	ENSCJAG00000037046	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	183306	188085	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004177}  [Source:UniProtKB/TrEMBL;Acc:H9KVS2]
ENSCJAG00000016174	NOVEL	protein_coding	ENSCJAG00000016174	chromosome:C_jacchus3.2.1:22:1:49145316:1	2763895	2764218	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029769}  [Source:UniProtKB/TrEMBL;Acc:F7I559]
ENSCJAG00000016177	KNOWN	protein_coding	GNA15	chromosome:C_jacchus3.2.1:22:1:49145316:1	2776909	2810519	D	Guanine nucleotide-binding protein subunit alpha-15 {ECO:0000313|EMBL:JAB05024.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029787}  [Source:UniProtKB/TrEMBL;Acc:F7I539]
ENSCJAG00000018098	KNOWN	protein_coding	ARAP3	chromosome:C_jacchus3.2.1:2:1:204313951:1	38624439	38651942	R	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 {ECO:0000313|EMBL:JAB17904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033599}  [Source:UniProtKB/TrEMBL;Acc:F6SHN5]
ENSCJAG00000016189	NOVEL	protein_coding	ENSCJAG00000016189	chromosome:C_jacchus3.2.1:22:1:49145316:1	2791757	2800327	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029800}  [Source:UniProtKB/TrEMBL;Acc:F7HRE0]
ENSCJAG00000011330	KNOWN_BY_PROJECTION	protein_coding	S1PR4	chromosome:C_jacchus3.2.1:22:1:49145316:1	2816747	2817955	D	sphingosine-1-phosphate receptor 4 [Source:HGNC Symbol;Acc:HGNC:3170]
ENSCJAG00000007633	KNOWN	protein_coding	GK	chromosome:C_jacchus3.2.1:X:1:142054208:1	29317256	29395495	D	Glycerol kinase isoform b {ECO:0000313|EMBL:JAB08026.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014270}  [Source:UniProtKB/TrEMBL;Acc:F7ITC2]
ENSCJAG00000011334	KNOWN_BY_PROJECTION	protein_coding	NCLN	chromosome:C_jacchus3.2.1:22:1:49145316:1	2822532	2844695	D	nicalin [Source:HGNC Symbol;Acc:HGNC:26923]
ENSCJAG00000014799	KNOWN_BY_PROJECTION	protein_coding	CELF5	chromosome:C_jacchus3.2.1:22:1:49145316:1	2915332	2938572	D	CUGBP, Elav-like family member 5 [Source:HGNC Symbol;Acc:HGNC:14058]
ENSCJAG00000002321	KNOWN	protein_coding	CYP2D19	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	200930	205166	D	Callithrix jacchus Cytochrome P450 2D19 (CYP2D19), mRNA. [Source:RefSeq mRNA;Acc:NM_001204438]
ENSCJAG00000007065	KNOWN	protein_coding	IRF9	chromosome:C_jacchus3.2.1:10:1:132174527:1	48205151	48210179	D	Interferon regulatory factor 9 {ECO:0000313|EMBL:JAB03403.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013116}  [Source:UniProtKB/TrEMBL;Acc:F6VJZ8]
ENSCJAG00000018128	KNOWN	protein_coding	CNN3	chromosome:C_jacchus3.2.1:7:1:155834243:1	131497084	131527726	R	Calponin-3 {ECO:0000313|EMBL:JAB11192.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033527}  [Source:UniProtKB/TrEMBL;Acc:F6U273]
ENSCJAG00000004156	KNOWN	protein_coding	TBC1D14	chromosome:C_jacchus3.2.1:3:1:190850796:1	184837251	184946699	D	TBC1 domain family member 14 isoform a {ECO:0000313|EMBL:JAB07753.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007561}  [Source:UniProtKB/TrEMBL;Acc:F6R7W4]
ENSCJAG00000033100	NOVEL	protein_coding	ENSCJAG00000033100	chromosome:C_jacchus3.2.1:22:1:49145316:1	2917660	2918213	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046046}  [Source:UniProtKB/TrEMBL;Acc:F6ZTL2]
ENSCJAG00000018145	KNOWN	protein_coding	ALG14	chromosome:C_jacchus3.2.1:7:1:155834243:1	131583239	131664717	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033558}  [Source:UniProtKB/TrEMBL;Acc:F6T531]
ENSCJAG00000018146	KNOWN_BY_PROJECTION	protein_coding	ENO1	chromosome:C_jacchus3.2.1:7:1:155834243:1	131591977	131593905	D	enolase 1, (alpha) [Source:HGNC Symbol;Acc:HGNC:3350]
ENSCJAG00000004152	NOVEL	pseudogene	ENSCJAG00000004152	chromosome:C_jacchus3.2.1:3:1:190850796:1	184956427	184958085	R	<no descrition>
ENSCJAG00000018153	KNOWN	protein_coding	TMEM56	chromosome:C_jacchus3.2.1:7:1:155834243:1	131724052	131802062	D	Transmembrane protein 56 {ECO:0000313|EMBL:JAB04971.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033576}  [Source:UniProtKB/TrEMBL;Acc:F6STK6]
ENSCJAG00000004147	KNOWN_BY_PROJECTION	protein_coding	TADA2B	chromosome:C_jacchus3.2.1:3:1:190850796:1	184958780	184970360	D	transcriptional adaptor 2B [Source:HGNC Symbol;Acc:HGNC:30781]
ENSCJAG00000018158	KNOWN	protein_coding	RWDD3	chromosome:C_jacchus3.2.1:7:1:155834243:1	131839101	131852462	D	RWD domain-containing protein 3 isoform a {ECO:0000313|EMBL:JAB18660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033592}  [Source:UniProtKB/TrEMBL;Acc:F6SHW7]
ENSCJAG00000014813	KNOWN_BY_PROJECTION	protein_coding	NFIC	chromosome:C_jacchus3.2.1:22:1:49145316:1	3007831	3113746	D	nuclear factor I/C (CCAAT-binding transcription factor) [Source:HGNC Symbol;Acc:HGNC:7786]
ENSCJAG00000009570	KNOWN_BY_PROJECTION	protein_coding	C12orf49	chromosome:C_jacchus3.2.1:9:1:124281992:1	107303494	107324509	R	chromosome 12 open reading frame 49 [Source:HGNC Symbol;Acc:HGNC:26128]
ENSCJAG00000018167	NOVEL	protein_coding	ENSCJAG00000018167	chromosome:C_jacchus3.2.1:7:1:155834243:1	132344057	132345088	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045388}  [Source:UniProtKB/TrEMBL;Acc:F6SIZ8]
ENSCJAG00000008494	KNOWN	protein_coding	GTPBP4	chromosome:C_jacchus3.2.1:7:1:155834243:1	151502	177960	D	Callithrix jacchus GTP binding protein 4 (GTPBP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001253779]
ENSCJAG00000018171	NOVEL	pseudogene	ENSCJAG00000018171	chromosome:C_jacchus3.2.1:7:1:155834243:1	132488833	132489239	D	<no descrition>
ENSCJAG00000012729	KNOWN_BY_PROJECTION	protein_coding	PIGS	chromosome:C_jacchus3.2.1:5:1:159171411:1	95573586	95593025	D	phosphatidylinositol glycan anchor biosynthesis, class S [Source:HGNC Symbol;Acc:HGNC:14937]
ENSCJAG00000018172	KNOWN_BY_PROJECTION	protein_coding	PTBP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	133390180	133398656	D	polypyrimidine tract binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17662]
ENSCJAG00000031534	NOVEL	protein_coding	ENSCJAG00000031534	chromosome:C_jacchus3.2.1:7:1:155834243:1	133704131	133723730	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046480}  [Source:UniProtKB/TrEMBL;Acc:F7IK84]
ENSCJAG00000004128	KNOWN_BY_PROJECTION	protein_coding	GRPEL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	184974963	184983143	R	GrpE-like 1, mitochondrial (E. coli) [Source:HGNC Symbol;Acc:HGNC:19696]
ENSCJAG00000018179	NOVEL	protein_coding	ENSCJAG00000018179	chromosome:C_jacchus3.2.1:7:1:155834243:1	134046276	134590706	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033649}  [Source:UniProtKB/TrEMBL;Acc:F6QYG3]
ENSCJAG00000001584	KNOWN	protein_coding	MRPL40	chromosome:C_jacchus3.2.1:1:1:210400635:1	183839086	183843510	D	39S ribosomal protein L40, mitochondrial {ECO:0000313|EMBL:JAB11924.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002831}  [Source:UniProtKB/TrEMBL;Acc:F7IBG7]
ENSCJAG00000036398	KNOWN_BY_PROJECTION	protein_coding	C22orf39	chromosome:C_jacchus3.2.1:1:1:210400635:1	183849234	183856694	R	chromosome 22 open reading frame 39 [Source:HGNC Symbol;Acc:HGNC:27012]
ENSCJAG00000009540	KNOWN_BY_PROJECTION	protein_coding	RNFT2	chromosome:C_jacchus3.2.1:9:1:124281992:1	107324728	107440677	D	ring finger protein, transmembrane 2 [Source:HGNC Symbol;Acc:HGNC:25905]
ENSCJAG00000012712	KNOWN	protein_coding	ENSCJAG00000012712	chromosome:C_jacchus3.2.1:5:1:159171411:1	95594028	95600081	D	Protein unc-119 homolog A isoform a {ECO:0000313|EMBL:JAB15418.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023305}  [Source:UniProtKB/TrEMBL;Acc:F7IB75]
ENSCJAG00000018174	KNOWN_BY_PROJECTION	protein_coding	PCDH1	chromosome:C_jacchus3.2.1:2:1:204313951:1	38840198	38867984	R	protocadherin 1 [Source:HGNC Symbol;Acc:HGNC:8655]
ENSCJAG00000009916	KNOWN	protein_coding	KCNQ5	chromosome:C_jacchus3.2.1:4:1:171630274:1	70905108	71549789	D	Potassium voltage-gated channel, KQT-like subfamily, member 5 (Predicted) {ECO:0000313|EMBL:ABY82109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005416}  [Source:UniProtKB/TrEMBL;Acc:B0KWB1]
ENSCJAG00000008483	KNOWN	protein_coding	IDI1	chromosome:C_jacchus3.2.1:7:1:155834243:1	191281	198793	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015624}  [Source:UniProtKB/TrEMBL;Acc:F7H4P4]
ENSCJAG00000018193	KNOWN	protein_coding	KIAA0141	chromosome:C_jacchus3.2.1:2:1:204313951:1	38911382	38929405	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033688}  [Source:UniProtKB/TrEMBL;Acc:F6Q271]
ENSCJAG00000001566	KNOWN	protein_coding	UFD1L	chromosome:C_jacchus3.2.1:1:1:210400635:1	183858342	183887692	R	Ubiquitin fusion degradation protein 1 homolog isoform A {ECO:0000313|EMBL:JAB02586.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002814}  [Source:UniProtKB/TrEMBL;Acc:F7IBI3]
ENSCJAG00000012705	KNOWN_BY_PROJECTION	protein_coding	FOXN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95608471	95639964	R	forkhead box N1 [Source:HGNC Symbol;Acc:HGNC:12765]
ENSCJAG00000022011	KNOWN_BY_PROJECTION	protein_coding	PSAPL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	185368241	185369773	R	prosaposin-like 1 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:33131]
ENSCJAG00000011706	NOVEL	protein_coding	ENSCJAG00000011706	chromosome:C_jacchus3.2.1:3:1:190850796:1	185491775	185495135	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021484}  [Source:UniProtKB/TrEMBL;Acc:F6QRC1]
ENSCJAG00000014859	KNOWN_BY_PROJECTION	protein_coding	SMIM24	chromosome:C_jacchus3.2.1:22:1:49145316:1	3126372	3133902	R	small integral membrane protein 24 [Source:HGNC Symbol;Acc:HGNC:37244]
ENSCJAG00000001022	KNOWN_BY_PROJECTION	protein_coding	SORCS2	chromosome:C_jacchus3.2.1:3:1:190850796:1	185642333	185671226	D	sortilin-related VPS10 domain containing receptor 2 [Source:HGNC Symbol;Acc:HGNC:16698]
ENSCJAG00000033735	NOVEL	protein_coding	ENSCJAG00000033735	chromosome:C_jacchus3.2.1:22:1:49145316:1	3132265	3132323	R	<no descrition>
ENSCJAG00000014871	KNOWN	protein_coding	DOHH	chromosome:C_jacchus3.2.1:22:1:49145316:1	3148136	3153622	R	Deoxyhypusine hydroxylase {ECO:0000256|HAMAP-Rule:MF_03101}  [Source:UniProtKB/TrEMBL;Acc:F7HA65]
ENSCJAG00000033747	NOVEL	pseudogene	ENSCJAG00000033747	chromosome:C_jacchus3.2.1:3:1:190850796:1	185673248	185673689	D	<no descrition>
ENSCJAG00000008441	KNOWN	protein_coding	WDR37	chromosome:C_jacchus3.2.1:7:1:155834243:1	206847	286851	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015594}  [Source:UniProtKB/TrEMBL;Acc:F7CUG9]
ENSCJAG00000014877	KNOWN_BY_PROJECTION	protein_coding	FZR1	chromosome:C_jacchus3.2.1:22:1:49145316:1	3183615	3193716	D	fizzy/cell division cycle 20 related 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:24824]
ENSCJAG00000001034	KNOWN	protein_coding	AFAP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	185733446	185847810	R	Actin filament-associated protein 1 isoform B {ECO:0000313|EMBL:JAB08516.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001795}  [Source:UniProtKB/TrEMBL;Acc:F6VY79]
ENSCJAG00000012683	KNOWN_BY_PROJECTION	protein_coding	SLC13A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	95648729	95673870	R	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10917]
ENSCJAG00000008480	NOVEL	protein_coding	ENSCJAG00000008480	chromosome:C_jacchus3.2.1:7:1:155834243:1	207766	209735	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052079}  [Source:UniProtKB/TrEMBL;Acc:F7IGW4]
ENSCJAG00000018195	KNOWN	protein_coding	SNX7	chromosome:C_jacchus3.2.1:7:1:155834243:1	135318087	135432386	D	Sorting nexin-7 isoform a {ECO:0000313|EMBL:JAB11212.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033721}  [Source:UniProtKB/TrEMBL;Acc:F6TQL6]
ENSCJAG00000008412	KNOWN_BY_PROJECTION	protein_coding	ADARB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	330339	485020	R	adenosine deaminase, RNA-specific, B2 (non-functional) [Source:HGNC Symbol;Acc:HGNC:227]
ENSCJAG00000007023	KNOWN_BY_PROJECTION	protein_coding	REC8	chromosome:C_jacchus3.2.1:10:1:132174527:1	48215185	48224452	D	REC8 meiotic recombination protein [Source:HGNC Symbol;Acc:HGNC:16879]
ENSCJAG00000009513	KNOWN_BY_PROJECTION	protein_coding	FBXW8	chromosome:C_jacchus3.2.1:9:1:124281992:1	107504726	107634910	D	F-box and WD repeat domain containing 8 [Source:HGNC Symbol;Acc:HGNC:13597]
ENSCJAG00000035391	KNOWN_BY_PROJECTION	protein_coding	PCDH12	chromosome:C_jacchus3.2.1:2:1:204313951:1	38931456	38947285	R	protocadherin 12 [Source:HGNC Symbol;Acc:HGNC:8657]
ENSCJAG00000009509	KNOWN	protein_coding	TESC	chromosome:C_jacchus3.2.1:9:1:124281992:1	107647440	107665701	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017421}  [Source:UniProtKB/TrEMBL;Acc:F7I0N3]
ENSCJAG00000012677	KNOWN	protein_coding	SLC46A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95736736	95744743	D	Proton-coupled folate transporter isoform 1 {ECO:0000313|EMBL:JAB05056.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023219}  [Source:UniProtKB/TrEMBL;Acc:F7IQD7]
ENSCJAG00000009468	KNOWN_BY_PROJECTION	protein_coding	FBXO21	chromosome:C_jacchus3.2.1:9:1:124281992:1	107751552	107797506	R	F-box protein 21 [Source:HGNC Symbol;Acc:HGNC:13592]
ENSCJAG00000014896	KNOWN_BY_PROJECTION	protein_coding	C19orf71	chromosome:C_jacchus3.2.1:22:1:49145316:1	3197730	3201408	D	chromosome 19 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:34496]
ENSCJAG00000014897	KNOWN_BY_PROJECTION	protein_coding	MFSD12	chromosome:C_jacchus3.2.1:22:1:49145316:1	3200099	3208639	R	major facilitator superfamily domain containing 12 [Source:HGNC Symbol;Acc:HGNC:28299]
ENSCJAG00000001523	KNOWN_BY_PROJECTION	protein_coding	CDC45	chromosome:C_jacchus3.2.1:1:1:210400635:1	183888563	183938394	D	cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
ENSCJAG00000012608	KNOWN_BY_PROJECTION	protein_coding	SARM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95747508	95777094	R	sterile alpha and TIR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:17074]
ENSCJAG00000018231	NOVEL	protein_coding	ENSCJAG00000018231	chromosome:C_jacchus3.2.1:7:1:155834243:1	135542040	135658442	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033757}  [Source:UniProtKB/TrEMBL;Acc:F6T342]
ENSCJAG00000014904	KNOWN_BY_PROJECTION	protein_coding	GIPC3	chromosome:C_jacchus3.2.1:22:1:49145316:1	3230329	3233986	D	GIPC PDZ domain containing family, member 3 [Source:HGNC Symbol;Acc:HGNC:18183]
ENSCJAG00000012655	KNOWN_BY_PROJECTION	protein_coding	VTN	chromosome:C_jacchus3.2.1:5:1:159171411:1	95771701	95777179	D	vitronectin [Source:HGNC Symbol;Acc:HGNC:12724]
ENSCJAG00000009942	NOVEL	protein_coding	KHDC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	71560389	71602806	R	KH homology domain containing 1 (Predicted) {ECO:0000313|EMBL:ABY82111.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047632}  [Source:UniProtKB/TrEMBL;Acc:B0KWA5]
ENSCJAG00000018214	NOVEL	pseudogene	ENSCJAG00000018214	chromosome:C_jacchus3.2.1:2:1:204313951:1	38951640	38952832	D	<no descrition>
ENSCJAG00000034523	KNOWN	protein_coding	TMEM199	chromosome:C_jacchus3.2.1:5:1:159171411:1	95779635	95784647	R	Transmembrane protein 199 {ECO:0000313|EMBL:JAB05297.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023166}  [Source:UniProtKB/TrEMBL;Acc:F7HX53]
ENSCJAG00000014919	NOVEL	pseudogene	ENSCJAG00000014919	chromosome:C_jacchus3.2.1:22:1:49145316:1	3235291	3236897	D	<no descrition>
ENSCJAG00000004261	NOVEL	pseudogene	ENSCJAG00000004261	chromosome:C_jacchus3.2.1:17:1:74750902:1	58152057	58152424	D	<no descrition>
ENSCJAG00000014921	KNOWN	protein_coding	TBXA2R	chromosome:C_jacchus3.2.1:22:1:49145316:1	3238697	3256920	R	Thromboxane A2 receptor isoform alpha {ECO:0000313|EMBL:JAB03310.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027478}  [Source:UniProtKB/TrEMBL;Acc:F7FT40]
ENSCJAG00000009944	NOVEL	protein_coding	ENSCJAG00000009944	chromosome:C_jacchus3.2.1:4:1:171630274:1	71560615	71561579	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018255}  [Source:UniProtKB/TrEMBL;Acc:F7GJU8]
ENSCJAG00000018220	KNOWN_BY_PROJECTION	protein_coding	RNF14	chromosome:C_jacchus3.2.1:2:1:204313951:1	38964657	38985484	D	ring finger protein 14 [Source:HGNC Symbol;Acc:HGNC:10058]
ENSCJAG00000009945	NOVEL	protein_coding	ENSCJAG00000009945	chromosome:C_jacchus3.2.1:4:1:171630274:1	71626860	71627833	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018264}  [Source:UniProtKB/TrEMBL;Acc:F7G9E9]
ENSCJAG00000009947	KNOWN	protein_coding	KHDC3L	chromosome:C_jacchus3.2.1:4:1:171630274:1	71644408	71646131	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045230}  [Source:UniProtKB/TrEMBL;Acc:F6QT12]
ENSCJAG00000004263	KNOWN_BY_PROJECTION	protein_coding	EOMES	chromosome:C_jacchus3.2.1:17:1:74750902:1	58380775	58387052	R	eomesodermin [Source:HGNC Symbol;Acc:HGNC:3372]
ENSCJAG00000020411	NOVEL	protein_coding	ENSCJAG00000020411	chromosome:C_jacchus3.2.1:7:1:155834243:1	597908	600090	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037941}  [Source:UniProtKB/TrEMBL;Acc:F6UQM9]
ENSCJAG00000020415	NOVEL	protein_coding	ENSCJAG00000020415	chromosome:C_jacchus3.2.1:7:1:155834243:1	599435	600318	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048257}  [Source:UniProtKB/TrEMBL;Acc:F7E5P7]
ENSCJAG00000001053	KNOWN_BY_PROJECTION	protein_coding	ABLIM2	chromosome:C_jacchus3.2.1:3:1:190850796:1	185947283	186091270	R	actin binding LIM protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:19195]
ENSCJAG00000014929	KNOWN_BY_PROJECTION	protein_coding	CACTIN	chromosome:C_jacchus3.2.1:22:1:49145316:1	3261345	3278804	R	cactin, spliceosome C complex subunit [Source:HGNC Symbol;Acc:HGNC:29938]
ENSCJAG00000009962	NOVEL	protein_coding	OOEP	chromosome:C_jacchus3.2.1:4:1:171630274:1	71650473	71651678	R	Oocyte expressed protein homolog (Predicted) {ECO:0000313|EMBL:ABY82112.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018299}  [Source:UniProtKB/TrEMBL;Acc:B0KWA6]
ENSCJAG00000018252	NOVEL	protein_coding	ENSCJAG00000018252	chromosome:C_jacchus3.2.1:7:1:155834243:1	135894868	135938836	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033817}  [Source:UniProtKB/TrEMBL;Acc:F6RJD7]
ENSCJAG00000009966	KNOWN_BY_PROJECTION	protein_coding	DDX43	chromosome:C_jacchus3.2.1:4:1:171630274:1	71672609	71690637	D	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:HGNC Symbol;Acc:HGNC:18677]
ENSCJAG00000012566	KNOWN_BY_PROJECTION	protein_coding	POLDIP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	95784710	95795299	D	polymerase (DNA-directed), delta interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:23781]
ENSCJAG00000020417	KNOWN_BY_PROJECTION	protein_coding	PFKP	chromosome:C_jacchus3.2.1:7:1:155834243:1	1941253	2013867	D	phosphofructokinase, platelet [Source:HGNC Symbol;Acc:HGNC:8878]
ENSCJAG00000014951	KNOWN_BY_PROJECTION	protein_coding	PIP5K1C	chromosome:C_jacchus3.2.1:22:1:49145316:1	3283346	3318221	R	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma [Source:HGNC Symbol;Acc:HGNC:8996]
ENSCJAG00000018247	KNOWN_BY_PROJECTION	protein_coding	GNPDA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	38999209	39010326	R	glucosamine-6-phosphate deaminase 1 [Source:HGNC Symbol;Acc:HGNC:4417]
ENSCJAG00000004272	KNOWN	protein_coding	CMC1	chromosome:C_jacchus3.2.1:17:1:74750902:1	58894897	58974634	D	COX assembly mitochondrial protein homolog {ECO:0000313|EMBL:JAB13381.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007731}  [Source:UniProtKB/TrEMBL;Acc:F6XKW2]
ENSCJAG00000004276	KNOWN	protein_coding	AZI2	chromosome:C_jacchus3.2.1:17:1:74750902:1	58978226	59004491	R	5-azacytidine-induced protein 2 isoform a {ECO:0000313|EMBL:JAB08337.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007768}  [Source:UniProtKB/TrEMBL;Acc:F6WYF7]
ENSCJAG00000018277	KNOWN_BY_PROJECTION	protein_coding	PALMD	chromosome:C_jacchus3.2.1:7:1:155834243:1	136267535	136301698	D	palmdelphin [Source:HGNC Symbol;Acc:HGNC:15846]
ENSCJAG00000007710	KNOWN	protein_coding	TAB3	chromosome:C_jacchus3.2.1:X:1:142054208:1	29489374	29516910	R	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 {ECO:0000313|EMBL:JAB03169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014388}  [Source:UniProtKB/TrEMBL;Acc:F7I9D6]
ENSCJAG00000018284	KNOWN_BY_PROJECTION	protein_coding	FRRS1	chromosome:C_jacchus3.2.1:7:1:155834243:1	136318873	136358208	R	ferric-chelate reductase 1 [Source:HGNC Symbol;Acc:HGNC:27622]
ENSCJAG00000012542	KNOWN	protein_coding	TNFAIP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95794925	95806498	R	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 {ECO:0000313|EMBL:JAB10409.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013176}  [Source:UniProtKB/TrEMBL;Acc:F7CFM4]
ENSCJAG00000004042	KNOWN_BY_PROJECTION	protein_coding	HIAT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	136439045	136445607	D	hippocampus abundant transcript 1 [Source:HGNC Symbol;Acc:HGNC:23363]
ENSCJAG00000004048	KNOWN	protein_coding	SASS6	chromosome:C_jacchus3.2.1:7:1:155834243:1	136447608	136491592	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007361}  [Source:UniProtKB/TrEMBL;Acc:F6R938]
ENSCJAG00000019337	KNOWN_BY_PROJECTION	protein_coding	FAM160B1	chromosome:C_jacchus3.2.1:12:1:121768101:1	102518182	102559038	D	family with sequence similarity 160, member B1 [Source:HGNC Symbol;Acc:HGNC:29320]
ENSCJAG00000004300	KNOWN_BY_PROJECTION	protein_coding	ZCWPW2	chromosome:C_jacchus3.2.1:17:1:74750902:1	59047034	59159429	D	zinc finger, CW type with PWWP domain 2 [Source:HGNC Symbol;Acc:HGNC:23574]
ENSCJAG00000018271	KNOWN	protein_coding	NDFIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	39100572	39183187	D	NEDD4 family-interacting protein 1 {ECO:0000313|EMBL:JAB10200.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033846}  [Source:UniProtKB/TrEMBL;Acc:F6QXJ7]
ENSCJAG00000009506	KNOWN_BY_PROJECTION	protein_coding	PSMA6	chromosome:C_jacchus3.2.1:9:1:124281992:1	107772231	107772963	R	proteasome (prosome, macropain) subunit, alpha type, 6 [Source:HGNC Symbol;Acc:HGNC:9535]
ENSCJAG00000003363	KNOWN	protein_coding	DBT	chromosome:C_jacchus3.2.1:7:1:155834243:1	136524102	136585231	R	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial {ECO:0000313|EMBL:JAB03174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006157}  [Source:UniProtKB/TrEMBL;Acc:F7EDL0]
ENSCJAG00000006937	KNOWN	protein_coding	IPO4	chromosome:C_jacchus3.2.1:10:1:132174527:1	48224425	48234858	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013016}  [Source:UniProtKB/TrEMBL;Acc:F7B365]
ENSCJAG00000004312	KNOWN_BY_PROJECTION	protein_coding	RBMS3	chromosome:C_jacchus3.2.1:17:1:74750902:1	59949280	60958956	D	RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
ENSCJAG00000018287	NOVEL	pseudogene	ENSCJAG00000018287	chromosome:C_jacchus3.2.1:2:1:204313951:1	39229197	39230991	R	<no descrition>
ENSCJAG00000018293	KNOWN_BY_PROJECTION	protein_coding	SPRY4	chromosome:C_jacchus3.2.1:2:1:204313951:1	39309354	39322274	R	sprouty homolog 4 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:15533]
ENSCJAG00000009419	KNOWN_BY_PROJECTION	protein_coding	NOS1	chromosome:C_jacchus3.2.1:9:1:124281992:1	107819303	107941736	R	nitric oxide synthase 1 (neuronal) [Source:HGNC Symbol;Acc:HGNC:7872]
ENSCJAG00000018301	KNOWN	protein_coding	FGF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	39596354	39716854	R	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:B0KW92]
ENSCJAG00000012534	KNOWN_BY_PROJECTION	protein_coding	IFT20	chromosome:C_jacchus3.2.1:5:1:159171411:1	95806571	95816925	D	intraflagellar transport 20 [Source:HGNC Symbol;Acc:HGNC:30989]
ENSCJAG00000012529	KNOWN	protein_coding	TMEM97	chromosome:C_jacchus3.2.1:5:1:159171411:1	95816743	95828781	R	Transmembrane protein 97 {ECO:0000313|EMBL:JAB02484.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022933}  [Source:UniProtKB/TrEMBL;Acc:F7IFA2]
ENSCJAG00000012490	KNOWN_BY_PROJECTION	protein_coding	NLK	chromosome:C_jacchus3.2.1:5:1:159171411:1	95879151	96045441	R	nemo-like kinase [Source:HGNC Symbol;Acc:HGNC:29858]
ENSCJAG00000003398	KNOWN	protein_coding	RTCA	chromosome:C_jacchus3.2.1:7:1:155834243:1	136595248	136617834	D	RNA 3'-terminal phosphate cyclase isoform b {ECO:0000313|EMBL:JAB09948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006221}  [Source:UniProtKB/TrEMBL;Acc:F7H6I6]
ENSCJAG00000004363	KNOWN	protein_coding	TGFBR2	chromosome:C_jacchus3.2.1:17:1:74750902:1	61267572	61353882	D	TGF-beta receptor type-2 isoform B {ECO:0000313|EMBL:JAB09237.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007949}  [Source:UniProtKB/TrEMBL;Acc:F6ZQQ5]
ENSCJAG00000020425	KNOWN_BY_PROJECTION	protein_coding	PITRM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	2014960	2056759	R	pitrilysin metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:17663]
ENSCJAG00000007775	KNOWN	protein_coding	DMD	chromosome:C_jacchus3.2.1:X:1:142054208:1	29807942	30670327	R	Dystrophin Dp71ab isoform {ECO:0000313|EMBL:JAB29805.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014538}  [Source:UniProtKB/TrEMBL;Acc:F7IIT7]
ENSCJAG00000012488	NOVEL	pseudogene	ENSCJAG00000012488	chromosome:C_jacchus3.2.1:5:1:159171411:1	96179130	96179551	R	<no descrition>
ENSCJAG00000012486	KNOWN	protein_coding	C5H17ORF108	chromosome:C_jacchus3.2.1:5:1:159171411:1	96206744	96223922	D	UPF0631 protein C17orf108 {ECO:0000313|EMBL:JAB11045.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022846}  [Source:UniProtKB/TrEMBL;Acc:F7HTC0]
ENSCJAG00000018315	KNOWN	protein_coding	ARHGAP26	chromosome:C_jacchus3.2.1:2:1:204313951:1	39792680	40262090	D	Rho GTPase-activating protein 26 isoform b {ECO:0000313|EMBL:JAB18623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033931}  [Source:UniProtKB/TrEMBL;Acc:F6TNF9]
ENSCJAG00000012477	KNOWN_BY_PROJECTION	protein_coding	NOS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	96287293	96331875	D	nitric oxide synthase 2, inducible [Source:HGNC Symbol;Acc:HGNC:7873]
ENSCJAG00000019357	KNOWN_BY_PROJECTION	protein_coding	TRUB1	chromosome:C_jacchus3.2.1:12:1:121768101:1	102637829	102679650	D	TruB pseudouridine (psi) synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
ENSCJAG00000003428	NOVEL	pseudogene	ENSCJAG00000003428	chromosome:C_jacchus3.2.1:7:1:155834243:1	136627641	136627995	R	<no descrition>
ENSCJAG00000014958	KNOWN_BY_PROJECTION	protein_coding	TJP3	chromosome:C_jacchus3.2.1:22:1:49145316:1	3367139	3411115	D	tight junction protein 3 [Source:HGNC Symbol;Acc:HGNC:11829]
ENSCJAG00000009402	NOVEL	protein_coding	ENSCJAG00000009402	chromosome:C_jacchus3.2.1:9:1:124281992:1	108217043	108615114	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017228}  [Source:UniProtKB/TrEMBL;Acc:F7I0T0]
ENSCJAG00000003430	KNOWN_BY_PROJECTION	protein_coding	CDC14A	chromosome:C_jacchus3.2.1:7:1:155834243:1	136678939	136831172	D	cell division cycle 14A [Source:HGNC Symbol;Acc:HGNC:1718]
ENSCJAG00000004395	KNOWN	protein_coding	GADL1	chromosome:C_jacchus3.2.1:17:1:74750902:1	61386811	61543032	R	Glutamate decarboxylase-like protein 1 {ECO:0000313|EMBL:JAB37688.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008008}  [Source:UniProtKB/TrEMBL;Acc:F7AAE3]
ENSCJAG00000014981	KNOWN	protein_coding	APBA3	chromosome:C_jacchus3.2.1:22:1:49145316:1	3411076	3423399	R	Amyloid beta A4 protein-binding family A member 3 {ECO:0000313|EMBL:JAB08736.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027605}  [Source:UniProtKB/TrEMBL;Acc:F7H4M8]
ENSCJAG00000021039	NOVEL	pseudogene	ENSCJAG00000021039	chromosome:C_jacchus3.2.1:17:1:74750902:1	61689734	61690989	D	<no descrition>
ENSCJAG00000014998	KNOWN_BY_PROJECTION	protein_coding	MRPL54	chromosome:C_jacchus3.2.1:22:1:49145316:1	3424241	3429840	D	mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
ENSCJAG00000015003	KNOWN_BY_PROJECTION	protein_coding	RAX2	chromosome:C_jacchus3.2.1:22:1:49145316:1	3434404	3435523	R	retina and anterior neural fold homeobox 2 [Source:HGNC Symbol;Acc:HGNC:18286]
ENSCJAG00000004428	KNOWN_BY_PROJECTION	protein_coding	STT3B	chromosome:C_jacchus3.2.1:17:1:74750902:1	62199418	62309431	D	STT3B, subunit of the oligosaccharyltransferase complex (catalytic) [Source:HGNC Symbol;Acc:HGNC:30611]
ENSCJAG00000021820	NOVEL	pseudogene	ENSCJAG00000021820	chromosome:C_jacchus3.2.1:1:1:210400635:1	183940931	183943207	R	<no descrition>
ENSCJAG00000007254	NOVEL	pseudogene	ENSCJAG00000007254	chromosome:C_jacchus3.2.1:1:1:210400635:1	183959055	183959418	D	<no descrition>
ENSCJAG00000015004	KNOWN	protein_coding	MATK	chromosome:C_jacchus3.2.1:22:1:49145316:1	3442525	3453996	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027649}  [Source:UniProtKB/TrEMBL;Acc:F7GU57]
ENSCJAG00000034555	NOVEL	protein_coding	ENSCJAG00000034555	chromosome:C_jacchus3.2.1:1:1:210400635:1	183962099	183962863	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049758}  [Source:UniProtKB/TrEMBL;Acc:F7CRW2]
ENSCJAG00000031147	KNOWN_BY_PROJECTION	protein_coding	SEPT5	chromosome:C_jacchus3.2.1:1:1:210400635:1	184114335	184115992	D	septin 5 [Source:HGNC Symbol;Acc:HGNC:9164]
ENSCJAG00000001520	KNOWN_BY_PROJECTION	protein_coding	GP1BB	chromosome:C_jacchus3.2.1:1:1:210400635:1	184118342	184120423	D	glycoprotein Ib (platelet), beta polypeptide [Source:HGNC Symbol;Acc:HGNC:4440]
ENSCJAG00000019375	KNOWN_BY_PROJECTION	protein_coding	ATRNL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	102805847	103659651	D	attractin-like 1 [Source:HGNC Symbol;Acc:HGNC:29063]
ENSCJAG00000014591	KNOWN_BY_PROJECTION	protein_coding	TBX1	chromosome:C_jacchus3.2.1:1:1:210400635:1	184176173	184197706	D	T-box 1 [Source:HGNC Symbol;Acc:HGNC:11592]
ENSCJAG00000018337	KNOWN	protein_coding	NR3C1	chromosome:C_jacchus3.2.1:2:1:204313951:1	40321497	40445095	R	Callithrix jacchus nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) (NR3C1), mRNA. [Source:RefSeq mRNA;Acc:NM_001257250]
ENSCJAG00000037354	KNOWN	protein_coding	GNB1L	chromosome:C_jacchus3.2.1:1:1:210400635:1	184206777	184278929	R	Guanine nucleotide-binding protein subunit beta-like protein 1 {ECO:0000313|EMBL:JAB14845.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026857}  [Source:UniProtKB/TrEMBL;Acc:F7I4A4]
ENSCJAG00000012425	KNOWN	protein_coding	LGALS9	chromosome:C_jacchus3.2.1:5:1:159171411:1	96334020	96472410	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F7HYU8]
ENSCJAG00000015022	KNOWN_BY_PROJECTION	protein_coding	ATCAY	chromosome:C_jacchus3.2.1:22:1:49145316:1	3535334	3580111	D	ataxia, cerebellar, Cayman type [Source:HGNC Symbol;Acc:HGNC:779]
ENSCJAG00000014582	KNOWN	protein_coding	C22ORF29	chromosome:C_jacchus3.2.1:1:1:210400635:1	184274386	184278869	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046300}; Uncharacterized protein C22orf29 {ECO:0000313|EMBL:JAB03274.1}  [Source:UniProtKB/TrEMBL;Acc:F6YST2]
ENSCJAG00000014546	KNOWN_BY_PROJECTION	protein_coding	TXNRD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	184305731	184360329	R	thioredoxin reductase 2 [Source:HGNC Symbol;Acc:HGNC:18155]
ENSCJAG00000015033	KNOWN_BY_PROJECTION	protein_coding	NMRK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	3591575	3597435	D	nicotinamide riboside kinase 2 [Source:HGNC Symbol;Acc:HGNC:17871]
ENSCJAG00000009415	NOVEL	pseudogene	ENSCJAG00000009415	chromosome:C_jacchus3.2.1:9:1:124281992:1	108365990	108367172	R	<no descrition>
ENSCJAG00000003454	NOVEL	pseudogene	ENSCJAG00000003454	chromosome:C_jacchus3.2.1:7:1:155834243:1	136910495	136911680	D	<no descrition>
ENSCJAG00000015041	KNOWN	protein_coding	DAPK3	chromosome:C_jacchus3.2.1:22:1:49145316:1	3607380	3622749	R	Death-associated protein kinase 3 {ECO:0000313|EMBL:JAB06256.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027705}  [Source:UniProtKB/TrEMBL;Acc:F7EKI7]
ENSCJAG00000009379	KNOWN	protein_coding	RFC5	chromosome:C_jacchus3.2.1:9:1:124281992:1	108669313	108685434	D	Replication factor C subunit 5 isoform 1 {ECO:0000313|EMBL:JAB09452.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017196}  [Source:UniProtKB/TrEMBL;Acc:F7I7V3]
ENSCJAG00000014538	KNOWN	protein_coding	COMT	chromosome:C_jacchus3.2.1:1:1:210400635:1	184386427	184397258	D	Catechol O-methyltransferase isoform MB-COMT {ECO:0000313|EMBL:JAB03101.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050671}  [Source:UniProtKB/TrEMBL;Acc:F7GEC0]
ENSCJAG00000003455	KNOWN_BY_PROJECTION	protein_coding	VCAM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	137049269	137068749	D	vascular cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:12663]
ENSCJAG00000004444	NOVEL	protein_coding	ENSCJAG00000004444	chromosome:C_jacchus3.2.1:17:1:74750902:1	62247357	62248300	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008035}  [Source:UniProtKB/TrEMBL;Acc:F6ZSK9]
ENSCJAG00000033599	NOVEL	protein_coding	ENSCJAG00000033599	chromosome:C_jacchus3.2.1:X:1:142054208:1	30987581	31867402	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014444}  [Source:UniProtKB/TrEMBL;Acc:F7HXL8]
ENSCJAG00000010758	KNOWN_BY_PROJECTION	protein_coding	TRMT2A	chromosome:C_jacchus3.2.1:1:1:210400635:1	184387353	184552769	R	tRNA methyltransferase 2 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24974]
ENSCJAG00000003497	KNOWN	protein_coding	EXTL2	chromosome:C_jacchus3.2.1:7:1:155834243:1	137228377	137250695	R	Exostosin-like 2 isoform 1 {ECO:0000313|EMBL:JAB01984.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048382}  [Source:UniProtKB/TrEMBL;Acc:F7G1W8]
ENSCJAG00000004447	KNOWN_BY_PROJECTION	protein_coding	OSBPL10	chromosome:C_jacchus3.2.1:17:1:74750902:1	62333677	62687710	R	oxysterol binding protein-like 10 [Source:HGNC Symbol;Acc:HGNC:16395]
ENSCJAG00000015045	KNOWN	protein_coding	EEF2	chromosome:C_jacchus3.2.1:22:1:49145316:1	3630100	3639150	R	Callithrix jacchus eukaryotic translation elongation factor 2 (EEF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001185044]
ENSCJAG00000013904	KNOWN_BY_PROJECTION	protein_coding	SH3TC1	chromosome:C_jacchus3.2.1:3:1:190850796:1	186205418	186243704	D	SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
ENSCJAG00000003508	KNOWN	protein_coding	SLC30A7	chromosome:C_jacchus3.2.1:7:1:155834243:1	137252070	137327645	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006388}; Zinc transporter 7 {ECO:0000313|EMBL:JAB08093.1}  [Source:UniProtKB/TrEMBL;Acc:F7DID4]
ENSCJAG00000007859	NOVEL	protein_coding	ENSCJAG00000007859	chromosome:C_jacchus3.2.1:X:1:142054208:1	31614459	31647439	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014550}  [Source:UniProtKB/TrEMBL;Acc:F7IGE9]
ENSCJAG00000007869	KNOWN	protein_coding	TMEM47	chromosome:C_jacchus3.2.1:X:1:142054208:1	33647311	33676907	R	Transmembrane protein 47 {ECO:0000313|EMBL:JAB03094.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014580}  [Source:UniProtKB/TrEMBL;Acc:F7IBN3]
ENSCJAG00000004451	KNOWN_BY_PROJECTION	protein_coding	GPD1L	chromosome:C_jacchus3.2.1:17:1:74750902:1	62785813	62847517	D	glycerol-3-phosphate dehydrogenase 1-like [Source:HGNC Symbol;Acc:HGNC:28956]
ENSCJAG00000021348	KNOWN_BY_PROJECTION	protein_coding	HMHB1	chromosome:C_jacchus3.2.1:2:1:204313951:1	40884240	40891443	D	histocompatibility (minor) HB-1 [Source:HGNC Symbol;Acc:HGNC:29677]
ENSCJAG00000032823	NOVEL	protein_coding	ENSCJAG00000032823	chromosome:C_jacchus3.2.1:17:1:74750902:1	62875861	62876512	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043987}  [Source:UniProtKB/TrEMBL;Acc:F7INY5]
ENSCJAG00000021347	KNOWN	protein_coding	YIPF5	chromosome:C_jacchus3.2.1:2:1:204313951:1	41249692	41261775	R	Protein YIPF5 isoform a {ECO:0000313|EMBL:JAB05761.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042902}  [Source:UniProtKB/TrEMBL;Acc:F6XDR9]
ENSCJAG00000032379	KNOWN	protein_coding	KLF6	chromosome:C_jacchus3.2.1:7:1:155834243:1	2601247	2610270	R	Krueppel-like factor 6 isoform A {ECO:0000313|EMBL:JAB07785.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037991}  [Source:UniProtKB/TrEMBL;Acc:F7BV10]
ENSCJAG00000011776	KNOWN	protein_coding	CMTM8	chromosome:C_jacchus3.2.1:17:1:74750902:1	62925669	63054105	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021613}  [Source:UniProtKB/TrEMBL;Acc:F6S6Z8]
ENSCJAG00000011778	KNOWN	protein_coding	CMTM6	chromosome:C_jacchus3.2.1:17:1:74750902:1	63147622	63170639	R	CKLF-like MARVEL transmembrane domain-containing protein 6 {ECO:0000313|EMBL:JAB09673.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021620}  [Source:UniProtKB/TrEMBL;Acc:F6RXA3]
ENSCJAG00000003472	KNOWN_BY_PROJECTION	protein_coding	DPH5	chromosome:C_jacchus3.2.1:7:1:155834243:1	137343719	137374417	R	diphthamide biosynthesis 5 [Source:HGNC Symbol;Acc:HGNC:24270]
ENSCJAG00000003530	KNOWN	protein_coding	S1PR1	chromosome:C_jacchus3.2.1:7:1:155834243:1	137592323	137597063	D	Sphingosine 1-phosphate receptor 1 {ECO:0000313|EMBL:JAB29699.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006401}  [Source:UniProtKB/TrEMBL;Acc:F7HBI1]
ENSCJAG00000014479	KNOWN_BY_PROJECTION	protein_coding	ARVCF	chromosome:C_jacchus3.2.1:1:1:210400635:1	184397180	184454408	R	armadillo repeat gene deleted in velocardiofacial syndrome [Source:HGNC Symbol;Acc:HGNC:728]
ENSCJAG00000015065	KNOWN	protein_coding	PIAS4	chromosome:C_jacchus3.2.1:22:1:49145316:1	3663449	3696935	D	E3 SUMO-protein ligase PIAS4 {ECO:0000313|EMBL:JAB04612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027781}  [Source:UniProtKB/TrEMBL;Acc:F7HEP6]
ENSCJAG00000009335	KNOWN_BY_PROJECTION	protein_coding	WSB2	chromosome:C_jacchus3.2.1:9:1:124281992:1	108686474	108719819	R	WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
ENSCJAG00000034368	NOVEL	pseudogene	ENSCJAG00000034368	chromosome:C_jacchus3.2.1:2:1:204313951:1	41961271	41961766	D	<no descrition>
ENSCJAG00000032805	NOVEL	pseudogene	ENSCJAG00000032805	chromosome:C_jacchus3.2.1:2:1:204313951:1	42247748	42248760	D	<no descrition>
ENSCJAG00000011783	KNOWN	protein_coding	DYNC1LI1	chromosome:C_jacchus3.2.1:17:1:74750902:1	63197286	63244051	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046006}  [Source:UniProtKB/TrEMBL;Acc:F7AUB1]
ENSCJAG00000034714	NOVEL	protein_coding	ENSCJAG00000034714	chromosome:C_jacchus3.2.1:2:1:204313951:1	42454761	42456426	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044184}  [Source:UniProtKB/TrEMBL;Acc:F7FKC4]
ENSCJAG00000021345	KNOWN	protein_coding	PRELID2	chromosome:C_jacchus3.2.1:2:1:204313951:1	42899620	42988126	R	PRELI domain-containing protein 2 isoform a {ECO:0000313|EMBL:JAB09556.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039729}  [Source:UniProtKB/TrEMBL;Acc:F7DC72]
ENSCJAG00000034713	NOVEL	pseudogene	ENSCJAG00000034713	chromosome:C_jacchus3.2.1:7:1:155834243:1	138006569	138006906	D	<no descrition>
ENSCJAG00000009988	NOVEL	protein_coding	ENSCJAG00000009988	chromosome:C_jacchus3.2.1:4:1:171630274:1	71696712	71731796	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018365}  [Source:UniProtKB/TrEMBL;Acc:F7DI49]
ENSCJAG00000032215	NOVEL	protein_coding	ENSCJAG00000032215	chromosome:C_jacchus3.2.1:X:1:142054208:1	34538171	34539030	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043772}  [Source:UniProtKB/TrEMBL;Acc:F7IP63]
ENSCJAG00000020448	KNOWN_BY_PROJECTION	protein_coding	AKR1E2	chromosome:C_jacchus3.2.1:7:1:155834243:1	3614382	3633265	D	aldo-keto reductase family 1, member E2 [Source:HGNC Symbol;Acc:HGNC:23437]
ENSCJAG00000019691	KNOWN_BY_PROJECTION	protein_coding	CXorf22	chromosome:C_jacchus3.2.1:X:1:142054208:1	34946990	35019748	D	chromosome X open reading frame 22 [Source:HGNC Symbol;Acc:HGNC:28546]
ENSCJAG00000008998	KNOWN	protein_coding	OLFM3	chromosome:C_jacchus3.2.1:7:1:155834243:1	138132148	138338608	R	Noelin-3 {ECO:0000313|EMBL:JAB19602.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016513}  [Source:UniProtKB/TrEMBL;Acc:F7CJF2]
ENSCJAG00000012392	KNOWN_BY_PROJECTION	protein_coding	KSR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	96360301	96524578	R	kinase suppressor of ras 1 [Source:HGNC Symbol;Acc:HGNC:6465]
ENSCJAG00000036468	NOVEL	protein_coding	ENSCJAG00000036468	chromosome:C_jacchus3.2.1:7:1:155834243:1	3651959	3702057	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052116}  [Source:UniProtKB/TrEMBL;Acc:F7I2R3]
ENSCJAG00000010003	KNOWN_BY_PROJECTION	protein_coding	MTO1	chromosome:C_jacchus3.2.1:4:1:171630274:1	71746518	71784116	D	mitochondrial tRNA translation optimization 1 [Source:HGNC Symbol;Acc:HGNC:19261]
ENSCJAG00000012419	NOVEL	pseudogene	ENSCJAG00000012419	chromosome:C_jacchus3.2.1:5:1:159171411:1	96447237	96447734	D	<no descrition>
ENSCJAG00000013923	KNOWN	protein_coding	HTRA3	chromosome:C_jacchus3.2.1:3:1:190850796:1	186272899	186314013	D	Serine protease HTRA3 {ECO:0000313|EMBL:JAB02680.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025622}  [Source:UniProtKB/TrEMBL;Acc:F7CCB8]
ENSCJAG00000034467	NOVEL	protein_coding	ENSCJAG00000034467	chromosome:C_jacchus3.2.1:5:1:159171411:1	96670435	96671779	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044540}  [Source:UniProtKB/TrEMBL;Acc:F7FX58]
ENSCJAG00000021342	KNOWN_BY_PROJECTION	protein_coding	GRXCR2	chromosome:C_jacchus3.2.1:2:1:204313951:1	43012491	43026392	R	glutaredoxin, cysteine rich 2 [Source:HGNC Symbol;Acc:HGNC:33862]
ENSCJAG00000021344	NOVEL	protein_coding	ENSCJAG00000021344	chromosome:C_jacchus3.2.1:2:1:204313951:1	43017745	43019103	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039728}  [Source:UniProtKB/TrEMBL;Acc:F7DC88]
ENSCJAG00000021336	KNOWN_BY_PROJECTION	protein_coding	SH3RF2	chromosome:C_jacchus3.2.1:2:1:204313951:1	43078802	43226359	D	SH3 domain containing ring finger 2 [Source:HGNC Symbol;Acc:HGNC:26299]
ENSCJAG00000031923	NOVEL	protein_coding	ENSCJAG00000031923	chromosome:C_jacchus3.2.1:X:1:142054208:1	35091297	35160195	D	<no descrition>
ENSCJAG00000012351	KNOWN_BY_PROJECTION	protein_coding	WSB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	96686098	96706282	R	WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]
ENSCJAG00000036210	KNOWN_BY_PROJECTION	protein_coding	ZBTB7A	chromosome:C_jacchus3.2.1:22:1:49145316:1	3703603	3781149	R	zinc finger and BTB domain containing 7A [Source:HGNC Symbol;Acc:HGNC:18078]
ENSCJAG00000033214	NOVEL	protein_coding	ENSCJAG00000033214	chromosome:C_jacchus3.2.1:22:1:49145316:1	3711461	3711785	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047187}  [Source:UniProtKB/TrEMBL;Acc:F7ISS6]
ENSCJAG00000019688	NOVEL	protein_coding	ENSCJAG00000019688	chromosome:C_jacchus3.2.1:X:1:142054208:1	35309987	35395050	D	<no descrition>
ENSCJAG00000031488	KNOWN_BY_PROJECTION	protein_coding	ZNF232	chromosome:C_jacchus3.2.1:X:1:142054208:1	35667188	35668362	R	zinc finger protein 232 [Source:HGNC Symbol;Acc:HGNC:13026]
ENSCJAG00000020451	KNOWN	protein_coding	ENSCJAG00000020451	chromosome:C_jacchus3.2.1:7:1:155834243:1	3696626	3813507	D	Aldo-keto reductase family 1 member C1 {ECO:0000313|EMBL:JAB21855.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044800}  [Source:UniProtKB/TrEMBL;Acc:F7ECG9]
ENSCJAG00000035339	NOVEL	protein_coding	ENSCJAG00000035339	chromosome:C_jacchus3.2.1:X:1:142054208:1	35940728	35941585	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7HGF5]
ENSCJAG00000015084	KNOWN	protein_coding	MAP2K2	chromosome:C_jacchus3.2.1:22:1:49145316:1	3745184	3781371	R	Dual specificity mitogen-activated protein kinase kinase 2 {ECO:0000313|EMBL:JAB09797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027831}  [Source:UniProtKB/TrEMBL;Acc:F7GNM2]
ENSCJAG00000019380	KNOWN	protein_coding	GFRA1	chromosome:C_jacchus3.2.1:12:1:121768101:1	103773515	104150806	R	GDNF family receptor alpha-1 isoform b preproprotein {ECO:0000313|EMBL:JAB17302.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035997}  [Source:UniProtKB/TrEMBL;Acc:F7DLH5]
ENSCJAG00000010043	NOVEL	protein_coding	ENSCJAG00000010043	chromosome:C_jacchus3.2.1:4:1:171630274:1	71786102	71787305	R	ATP synthase subunit gamma {ECO:0000256|RuleBase:RU004001}  [Source:UniProtKB/TrEMBL;Acc:F7I753]
ENSCJAG00000015105	KNOWN_BY_PROJECTION	protein_coding	CREB3L3	chromosome:C_jacchus3.2.1:22:1:49145316:1	3814587	3841577	D	cAMP responsive element binding protein 3-like 3 [Source:HGNC Symbol;Acc:HGNC:18855]
ENSCJAG00000005132	KNOWN	protein_coding	PRRG1	chromosome:C_jacchus3.2.1:X:1:142054208:1	36029856	36129640	D	Transmembrane gamma-carboxyglutamic acid protein 1 isoform 1 {ECO:0000313|EMBL:JAB06437.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009362}  [Source:UniProtKB/TrEMBL;Acc:F7H801]
ENSCJAG00000007110	KNOWN_BY_PROJECTION	protein_coding	ACOX3	chromosome:C_jacchus3.2.1:3:1:190850796:1	186387088	186430881	R	acyl-CoA oxidase 3, pristanoyl [Source:HGNC Symbol;Acc:HGNC:121]
ENSCJAG00000010051	NOVEL	protein_coding	EEF1AL7	chromosome:C_jacchus3.2.1:4:1:171630274:1	71802414	71806353	R	Putative uncharacterized protein EEF1AL7 {ECO:0000313|EMBL:ABY82115.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044596}  [Source:UniProtKB/TrEMBL;Acc:B0KWA9]
ENSCJAG00000010829	KNOWN_BY_PROJECTION	protein_coding	TANGO2	chromosome:C_jacchus3.2.1:1:1:210400635:1	184476953	184502197	D	transport and golgi organization 2 homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:25439]
ENSCJAG00000005141	NOVEL	protein_coding	ENSCJAG00000005141	chromosome:C_jacchus3.2.1:X:1:142054208:1	36189828	36255789	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014595}  [Source:UniProtKB/TrEMBL;Acc:F7IBJ2]
ENSCJAG00000011843	KNOWN_BY_PROJECTION	protein_coding	CNOT10	chromosome:C_jacchus3.2.1:17:1:74750902:1	63340584	63427030	D	CCR4-NOT transcription complex, subunit 10 [Source:HGNC Symbol;Acc:HGNC:23817]
ENSCJAG00000009323	KNOWN_BY_PROJECTION	protein_coding	VSIG10	chromosome:C_jacchus3.2.1:9:1:124281992:1	108721244	108768128	R	V-set and immunoglobulin domain containing 10 [Source:HGNC Symbol;Acc:HGNC:26078]
ENSCJAG00000015120	KNOWN	protein_coding	SIRT6	chromosome:C_jacchus3.2.1:22:1:49145316:1	3843433	3852464	R	NAD-dependent protein deacetylase sirtuin-6 isoform 1 {ECO:0000313|EMBL:JAB04744.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027893}  [Source:UniProtKB/TrEMBL;Acc:F7FRG7]
ENSCJAG00000005150	KNOWN_BY_PROJECTION	protein_coding	LANCL3	chromosome:C_jacchus3.2.1:X:1:142054208:1	36278541	36367299	D	LanC lantibiotic synthetase component C-like 3 (bacterial) [Source:HGNC Symbol;Acc:HGNC:24767]
ENSCJAG00000010780	KNOWN	protein_coding	DGCR8	chromosome:C_jacchus3.2.1:1:1:210400635:1	184512618	184545474	D	Microprocessor complex subunit DGCR8 isoform 1 {ECO:0000313|EMBL:JAB02867.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019940}  [Source:UniProtKB/TrEMBL;Acc:F6Z8W8]
ENSCJAG00000021499	NOVEL	protein_coding	ENSCJAG00000021499	chromosome:C_jacchus3.2.1:3:1:190850796:1	186438509	186438900	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040028}  [Source:UniProtKB/TrEMBL;Acc:F7ILM3]
ENSCJAG00000021498	KNOWN_BY_PROJECTION	protein_coding	TRMT44	chromosome:C_jacchus3.2.1:3:1:190850796:1	186451486	186491286	D	tRNA methyltransferase 44 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26653]
ENSCJAG00000015134	KNOWN_BY_PROJECTION	protein_coding	ANKRD24	chromosome:C_jacchus3.2.1:22:1:49145316:1	3867841	3884228	D	ankyrin repeat domain 24 [Source:HGNC Symbol;Acc:HGNC:29424]
ENSCJAG00000021314	KNOWN	protein_coding	LARS	chromosome:C_jacchus3.2.1:2:1:204313951:1	43112959	43355157	R	Leucine--tRNA ligase, cytoplasmic {ECO:0000313|EMBL:JAB28077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039714}  [Source:UniProtKB/TrEMBL;Acc:F7DT63]
ENSCJAG00000019401	KNOWN_BY_PROJECTION	protein_coding	CCDC172	chromosome:C_jacchus3.2.1:12:1:121768101:1	104059970	104284816	D	coiled-coil domain containing 172 [Source:HGNC Symbol;Acc:HGNC:30524]
ENSCJAG00000005168	KNOWN_BY_PROJECTION	protein_coding	XK	chromosome:C_jacchus3.2.1:X:1:142054208:1	36378602	36425631	D	X-linked Kx blood group [Source:HGNC Symbol;Acc:HGNC:12811]
ENSCJAG00000010749	KNOWN	protein_coding	RANBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	184553025	184745687	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019823}  [Source:UniProtKB/TrEMBL;Acc:F7CN40]
ENSCJAG00000009314	KNOWN	protein_coding	PEBP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	108806555	108816529	D	Phosphatidylethanolamine-binding protein 1 preproprotein {ECO:0000313|EMBL:JAB39754.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017071}  [Source:UniProtKB/TrEMBL;Acc:F7HLW5]
ENSCJAG00000012347	NOVEL	pseudogene	ENSCJAG00000012347	chromosome:C_jacchus3.2.1:5:1:159171411:1	96720203	96720639	R	<no descrition>
ENSCJAG00000005187	NOVEL	protein_coding	ENSCJAG00000005187	chromosome:C_jacchus3.2.1:X:1:142054208:1	36413668	36417177	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009453}  [Source:UniProtKB/TrEMBL;Acc:F7FMJ0]
ENSCJAG00000010730	KNOWN	protein_coding	ZDHHC8	chromosome:C_jacchus3.2.1:1:1:210400635:1	184577055	184587612	D	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F6WD64]
ENSCJAG00000010082	KNOWN	protein_coding	CD109	chromosome:C_jacchus3.2.1:4:1:171630274:1	71916978	72076310	D	CD109 antigen isoform 1 {ECO:0000313|EMBL:JAB16319.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018714}  [Source:UniProtKB/TrEMBL;Acc:F7F2Y8]
ENSCJAG00000019410	KNOWN_BY_PROJECTION	protein_coding	PNLIPRP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	104167748	104217636	D	pancreatic lipase-related protein 3 [Source:HGNC Symbol;Acc:HGNC:23492]
ENSCJAG00000020469	KNOWN_BY_PROJECTION	protein_coding	AKR1C4	chromosome:C_jacchus3.2.1:7:1:155834243:1	3746570	3767335	R	aldo-keto reductase family 1, member C4 [Source:HGNC Symbol;Acc:HGNC:387]
ENSCJAG00000005191	KNOWN_BY_PROJECTION	protein_coding	CYBB	chromosome:C_jacchus3.2.1:X:1:142054208:1	36491972	36532432	D	cytochrome b-245, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:2578]
ENSCJAG00000033357	NOVEL	protein_coding	ENSCJAG00000033357	chromosome:C_jacchus3.2.1:1:1:210400635:1	184588904	184591020	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043760}  [Source:UniProtKB/TrEMBL;Acc:F7IRH3]
ENSCJAG00000020478	NOVEL	protein_coding	ENSCJAG00000020478	chromosome:C_jacchus3.2.1:7:1:155834243:1	3830400	3845920	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038057}  [Source:UniProtKB/TrEMBL;Acc:F7IR57]
ENSCJAG00000012265	KNOWN_BY_PROJECTION	protein_coding	PELP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	96802699	96835621	R	proline, glutamate and leucine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:30134]
ENSCJAG00000021497	NOVEL	protein_coding	ENSCJAG00000021497	chromosome:C_jacchus3.2.1:3:1:190850796:1	186508456	186509569	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040023}  [Source:UniProtKB/TrEMBL;Acc:F7ILM7]
ENSCJAG00000021496	KNOWN_BY_PROJECTION	protein_coding	GPR78	chromosome:C_jacchus3.2.1:3:1:190850796:1	186603379	186609625	D	G protein-coupled receptor 78 [Source:HGNC Symbol;Acc:HGNC:4528]
ENSCJAG00000010728	NOVEL	pseudogene	ENSCJAG00000010728	chromosome:C_jacchus3.2.1:1:1:210400635:1	184636809	184637410	D	<no descrition>
ENSCJAG00000010718	KNOWN_BY_PROJECTION	protein_coding	RTN4R	chromosome:C_jacchus3.2.1:1:1:210400635:1	184672228	184674318	R	reticulon 4 receptor [Source:HGNC Symbol;Acc:HGNC:18601]
ENSCJAG00000034627	KNOWN_BY_PROJECTION	protein_coding	PNLIP	chromosome:C_jacchus3.2.1:12:1:121768101:1	104287484	104307712	D	pancreatic lipase [Source:HGNC Symbol;Acc:HGNC:9155]
ENSCJAG00000010707	NOVEL	protein_coding	ENSCJAG00000010707	chromosome:C_jacchus3.2.1:1:1:210400635:1	184751714	184789196	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019734}  [Source:UniProtKB/TrEMBL;Acc:F6XJH9]
ENSCJAG00000004879	NOVEL	protein_coding	ENSCJAG00000004879	chromosome:C_jacchus3.2.1:1:1:210400635:1	184790277	184797257	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008914}  [Source:UniProtKB/TrEMBL;Acc:F7I5R2]
ENSCJAG00000007387	NOVEL	protein_coding	ENSCJAG00000007387	chromosome:C_jacchus3.2.1:22:1:49145316:1	3917197	4063184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049829}  [Source:UniProtKB/TrEMBL;Acc:F6ZDD8]
ENSCJAG00000032977	NOVEL	protein_coding	ENSCJAG00000032977	chromosome:C_jacchus3.2.1:1:1:210400635:1	184828136	184833158	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045163}  [Source:UniProtKB/TrEMBL;Acc:F6RZJ9]
ENSCJAG00000020489	KNOWN_BY_PROJECTION	protein_coding	TUBAL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	3917202	3930735	R	tubulin, alpha-like 3 [Source:HGNC Symbol;Acc:HGNC:23534]
ENSCJAG00000021495	KNOWN_BY_PROJECTION	protein_coding	CPZ	chromosome:C_jacchus3.2.1:3:1:190850796:1	186615235	186648135	D	carboxypeptidase Z [Source:HGNC Symbol;Acc:HGNC:2333]
ENSCJAG00000008922	KNOWN_BY_PROJECTION	protein_coding	COL11A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	139154046	139370474	R	collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
ENSCJAG00000015974	NOVEL	protein_coding	ENSCJAG00000015974	chromosome:C_jacchus3.2.1:1:1:210400635:1	184841060	184850087	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051732}  [Source:UniProtKB/TrEMBL;Acc:F7CE22]
ENSCJAG00000011916	NOVEL	protein_coding	ENSCJAG00000011916	chromosome:C_jacchus3.2.1:17:1:74750902:1	63396684	63397355	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021870}  [Source:UniProtKB/TrEMBL;Acc:F6QWY2]
ENSCJAG00000011921	KNOWN_BY_PROJECTION	protein_coding	TRIM71	chromosome:C_jacchus3.2.1:17:1:74750902:1	63464507	63547326	D	tripartite motif containing 71, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:32669]
ENSCJAG00000036730	NOVEL	protein_coding	ENSCJAG00000036730	chromosome:C_jacchus3.2.1:17:1:74750902:1	63470583	63474763	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052390}  [Source:UniProtKB/TrEMBL;Acc:F7ILB8]
ENSCJAG00000022769	KNOWN_BY_PROJECTION	protein_coding	CCR4	chromosome:C_jacchus3.2.1:17:1:74750902:1	63590021	63594788	D	chemokine (C-C motif) receptor 4 [Source:HGNC Symbol;Acc:HGNC:1605]
ENSCJAG00000017506	KNOWN_BY_PROJECTION	protein_coding	SEMA6B	chromosome:C_jacchus3.2.1:22:1:49145316:1	3954798	4271317	R	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
ENSCJAG00000009225	KNOWN	protein_coding	TAOK3	chromosome:C_jacchus3.2.1:9:1:124281992:1	108828142	109046403	R	Serine/threonine-protein kinase TAO3 {ECO:0000313|EMBL:JAB05396.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016942}  [Source:UniProtKB/TrEMBL;Acc:F7CH96]
ENSCJAG00000035686	KNOWN	protein_coding	RNPC3	chromosome:C_jacchus3.2.1:7:1:155834243:1	139762998	139791530	D	RNA-binding protein 40 {ECO:0000313|EMBL:JAB09701.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016307}  [Source:UniProtKB/TrEMBL;Acc:F7CKT0]
ENSCJAG00000020490	KNOWN	protein_coding	NET1	chromosome:C_jacchus3.2.1:7:1:155834243:1	3937367	4174727	D	Neuroepithelial cell-transforming gene 1 protein isoform 2 {ECO:0000313|EMBL:JAB09963.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038081}  [Source:UniProtKB/TrEMBL;Acc:F7INN6]
ENSCJAG00000008444	KNOWN	protein_coding	SHD	chromosome:C_jacchus3.2.1:22:1:49145316:1	3956870	3990059	D	SH2 domain-containing adapter protein D {ECO:0000313|EMBL:JAB18175.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046390}  [Source:UniProtKB/TrEMBL;Acc:F7HZ67]
ENSCJAG00000006911	KNOWN	protein_coding	TM9SF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	48235097	48259620	R	Transmembrane 9 superfamily member 1 isoform a {ECO:0000313|EMBL:JAB03422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012832}  [Source:UniProtKB/TrEMBL;Acc:F6PMW5]
ENSCJAG00000012115	KNOWN	protein_coding	ARRB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	96839694	96850576	D	Beta-arrestin-2 isoform 1 {ECO:0000313|EMBL:JAB09169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022465}  [Source:UniProtKB/TrEMBL;Acc:F7ISB3]
ENSCJAG00000006855	NOVEL	protein_coding	ENSCJAG00000006855	chromosome:C_jacchus3.2.1:12:1:121768101:1	104329189	104333416	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012692}  [Source:UniProtKB/TrEMBL;Acc:F6TMB0]
ENSCJAG00000015967	NOVEL	protein_coding	ENSCJAG00000015967	chromosome:C_jacchus3.2.1:1:1:210400635:1	184856259	184867390	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029400}  [Source:UniProtKB/TrEMBL;Acc:F7I0M2]
ENSCJAG00000015965	NOVEL	protein_coding	ENSCJAG00000015965	chromosome:C_jacchus3.2.1:1:1:210400635:1	184972630	184973152	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029390}  [Source:UniProtKB/TrEMBL;Acc:F7I5B7]
ENSCJAG00000015957	KNOWN_BY_PROJECTION	protein_coding	LRRC74B	chromosome:C_jacchus3.2.1:1:1:210400635:1	185009576	185023229	R	leucine rich repeat containing 74B [Source:HGNC Symbol;Acc:HGNC:34301]
ENSCJAG00000019416	KNOWN_BY_PROJECTION	protein_coding	PNLIPRP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	104329663	104347089	D	pancreatic lipase-related protein 1 [Source:HGNC Symbol;Acc:HGNC:9156]
ENSCJAG00000031625	KNOWN	protein_coding	ENSCJAG00000031625	chromosome:C_jacchus3.2.1:7:1:155834243:1	139790127	139931193	D	Alpha-amylase {ECO:0000256|RuleBase:RU361134}  [Source:UniProtKB/TrEMBL;Acc:F7IRK3]
ENSCJAG00000008450	KNOWN_BY_PROJECTION	protein_coding	TMIGD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	3992394	4005895	R	transmembrane and immunoglobulin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28324]
ENSCJAG00000015953	KNOWN	protein_coding	SLC7A4	chromosome:C_jacchus3.2.1:1:1:210400635:1	185041321	185044453	D	Cationic amino acid transporter 4 {ECO:0000313|EMBL:JAB12728.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029377}  [Source:UniProtKB/TrEMBL;Acc:F7I5E9]
ENSCJAG00000014650	KNOWN_BY_PROJECTION	protein_coding	FSD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	4008546	4024889	D	fibronectin type III and SPRY domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13745]
ENSCJAG00000031790	NOVEL	protein_coding	ENSCJAG00000031790	chromosome:C_jacchus3.2.1:3:1:190850796:1	186664666	186721080	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051530}  [Source:UniProtKB/TrEMBL;Acc:F6W323]
ENSCJAG00000005227	KNOWN	protein_coding	DYNLT3	chromosome:C_jacchus3.2.1:X:1:142054208:1	36550917	36566878	R	Dynein light chain Tctex-type 3 {ECO:0000313|EMBL:JAB08397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009552}  [Source:UniProtKB/TrEMBL;Acc:F7HCY0]
ENSCJAG00000033163	KNOWN_BY_PROJECTION	protein_coding	HMX1	chromosome:C_jacchus3.2.1:3:1:190850796:1	186781662	186786075	R	H6 family homeobox 1 [Source:HGNC Symbol;Acc:HGNC:5017]
ENSCJAG00000004633	NOVEL	pseudogene	ENSCJAG00000004633	chromosome:C_jacchus3.2.1:3:1:190850796:1	187080222	187080750	D	<no descrition>
ENSCJAG00000033888	NOVEL	protein_coding	ENSCJAG00000033888	chromosome:C_jacchus3.2.1:3:1:190850796:1	187201662	187202824	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042424}  [Source:UniProtKB/TrEMBL;Acc:F7AQS8]
ENSCJAG00000003656	KNOWN_BY_PROJECTION	protein_coding	STAP2	chromosome:C_jacchus3.2.1:22:1:49145316:1	4025160	4041101	R	signal transducing adaptor family member 2 [Source:HGNC Symbol;Acc:HGNC:30430]
ENSCJAG00000015940	KNOWN_BY_PROJECTION	protein_coding	P2RX6	chromosome:C_jacchus3.2.1:1:1:210400635:1	185045166	185061466	R	purinergic receptor P2X, ligand gated ion channel, 6 [Source:HGNC Symbol;Acc:HGNC:8538]
ENSCJAG00000013237	KNOWN	protein_coding	LRPAP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	187259766	187277687	D	Alpha-2-macroglobulin receptor-associated protein {ECO:0000313|EMBL:JAB33356.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051268}  [Source:UniProtKB/TrEMBL;Acc:F6V0Z0]
ENSCJAG00000021335	KNOWN_BY_PROJECTION	protein_coding	PLAC8L1	chromosome:C_jacchus3.2.1:2:1:204313951:1	43247439	43268171	R	PLAC8-like 1 [Source:HGNC Symbol;Acc:HGNC:31746]
ENSCJAG00000021313	NOVEL	protein_coding	ENSCJAG00000021313	chromosome:C_jacchus3.2.1:2:1:204313951:1	43381896	43382553	R	<no descrition>
ENSCJAG00000019429	KNOWN_BY_PROJECTION	protein_coding	PNLIPRP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	104357530	104383216	D	pancreatic lipase-related protein 2 [Source:HGNC Symbol;Acc:HGNC:9157]
ENSCJAG00000020500	NOVEL	pseudogene	ENSCJAG00000020500	chromosome:C_jacchus3.2.1:7:1:155834243:1	4053050	4053454	R	<no descrition>
ENSCJAG00000021308	KNOWN	protein_coding	RBM27	chromosome:C_jacchus3.2.1:2:1:204313951:1	43387312	43472818	D	RNA-binding protein 27 {ECO:0000313|EMBL:JAB05808.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039669}  [Source:UniProtKB/TrEMBL;Acc:F7G4M3]
ENSCJAG00000011922	KNOWN_BY_PROJECTION	protein_coding	GLB1	chromosome:C_jacchus3.2.1:17:1:74750902:1	63634818	63730408	R	galactosidase, beta 1 [Source:HGNC Symbol;Acc:HGNC:4298]
ENSCJAG00000020501	KNOWN_BY_PROJECTION	protein_coding	ASB13	chromosome:C_jacchus3.2.1:7:1:155834243:1	4180758	4204983	R	ankyrin repeat and SOCS box containing 13 [Source:HGNC Symbol;Acc:HGNC:19765]
ENSCJAG00000005242	KNOWN	protein_coding	SYTL5	chromosome:C_jacchus3.2.1:X:1:142054208:1	36770858	36863949	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009663}  [Source:UniProtKB/TrEMBL;Acc:F7F7U0]
ENSCJAG00000020506	KNOWN_BY_PROJECTION	protein_coding	FAM208B	chromosome:C_jacchus3.2.1:7:1:155834243:1	4221121	4307351	D	family with sequence similarity 208, member B [Source:HGNC Symbol;Acc:HGNC:23484]
ENSCJAG00000008809	NOVEL	pseudogene	ENSCJAG00000008809	chromosome:C_jacchus3.2.1:7:1:155834243:1	140249981	140250494	R	<no descrition>
ENSCJAG00000014004	KNOWN	protein_coding	DOK7	chromosome:C_jacchus3.2.1:3:1:190850796:1	187291692	187333911	R	Protein Dok-7 isoform 1 {ECO:0000313|EMBL:JAB51100.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048614}  [Source:UniProtKB/TrEMBL;Acc:F6TXX6]
ENSCJAG00000022652	NOVEL	protein_coding	ENSCJAG00000022652	chromosome:C_jacchus3.2.1:7:1:155834243:1	141899505	141901049	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043737}  [Source:UniProtKB/TrEMBL;Acc:F7HRU9]
ENSCJAG00000008705	KNOWN	protein_coding	NTNG1	chromosome:C_jacchus3.2.1:7:1:155834243:1	143199802	143548955	D	Netrin-G1 isoform 3 {ECO:0000313|EMBL:JAB25691.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016118}  [Source:UniProtKB/TrEMBL;Acc:F7CLL8]
ENSCJAG00000015935	NOVEL	protein_coding	ENSCJAG00000015935	chromosome:C_jacchus3.2.1:1:1:210400635:1	185062353	185071754	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029336}  [Source:UniProtKB/TrEMBL;Acc:F7ICE1]
ENSCJAG00000015921	KNOWN	protein_coding	THAP7	chromosome:C_jacchus3.2.1:1:1:210400635:1	185073930	185076317	D	THAP domain-containing protein 7 {ECO:0000313|EMBL:JAB04205.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029306}  [Source:UniProtKB/TrEMBL;Acc:F7IH96]
ENSCJAG00000009195	KNOWN	protein_coding	SUDS3	chromosome:C_jacchus3.2.1:9:1:124281992:1	109051029	109091089	D	Sin3 histone deacetylase corepressor complex component SDS3 {ECO:0000313|EMBL:JAB11025.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049314}  [Source:UniProtKB/TrEMBL;Acc:F6ZZN9]
ENSCJAG00000010171	KNOWN_BY_PROJECTION	protein_coding	COL12A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	73320743	73465719	R	collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
ENSCJAG00000008623	KNOWN_BY_PROJECTION	protein_coding	VAV3	chromosome:C_jacchus3.2.1:7:1:155834243:1	143638630	144040596	R	vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
ENSCJAG00000019437	KNOWN_BY_PROJECTION	protein_coding	C10orf82	chromosome:C_jacchus3.2.1:12:1:121768101:1	104396275	104402817	R	chromosome 10 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:28500]
ENSCJAG00000012110	KNOWN	protein_coding	MED11	chromosome:C_jacchus3.2.1:5:1:159171411:1	96863675	96866053	D	Mediator of RNA polymerase II transcription subunit 11 {ECO:0000313|EMBL:JAB10728.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022225}  [Source:UniProtKB/TrEMBL;Acc:F6UN01]
ENSCJAG00000020512	KNOWN	protein_coding	GDI2	chromosome:C_jacchus3.2.1:7:1:155834243:1	4309043	4487050	R	Rab GDP dissociation inhibitor beta isoform 1 {ECO:0000313|EMBL:JAB03889.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045252}  [Source:UniProtKB/TrEMBL;Acc:F6QGU6]
ENSCJAG00000012099	KNOWN_BY_PROJECTION	protein_coding	CXCL16	chromosome:C_jacchus3.2.1:5:1:159171411:1	96868035	96876810	R	chemokine (C-X-C motif) ligand 16 [Source:HGNC Symbol;Acc:HGNC:16642]
ENSCJAG00000012052	KNOWN	protein_coding	ZMYND15	chromosome:C_jacchus3.2.1:5:1:159171411:1	96878002	96885207	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022187}; Zinc finger MYND domain-containing protein 15 isoform 1 {ECO:0000313|EMBL:JAB11322.1}  [Source:UniProtKB/TrEMBL;Acc:F6WEF1]
ENSCJAG00000011959	KNOWN_BY_PROJECTION	protein_coding	TMPPE	chromosome:C_jacchus3.2.1:17:1:74750902:1	63723273	63729501	R	transmembrane protein with metallophosphoesterase domain [Source:HGNC Symbol;Acc:HGNC:33865]
ENSCJAG00000021307	KNOWN_BY_PROJECTION	protein_coding	POU4F3	chromosome:C_jacchus3.2.1:2:1:204313951:1	43530251	43531724	D	POU class 4 homeobox 3 [Source:HGNC Symbol;Acc:HGNC:9220]
ENSCJAG00000021306	NOVEL	pseudogene	ENSCJAG00000021306	chromosome:C_jacchus3.2.1:2:1:204313951:1	43596048	43596521	D	<no descrition>
ENSCJAG00000021305	NOVEL	protein_coding	ENSCJAG00000021305	chromosome:C_jacchus3.2.1:2:1:204313951:1	43622384	43623624	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039664}  [Source:UniProtKB/TrEMBL;Acc:F7G4P7]
ENSCJAG00000011966	KNOWN_BY_PROJECTION	protein_coding	CRTAP	chromosome:C_jacchus3.2.1:17:1:74750902:1	63747849	63783233	D	cartilage associated protein [Source:HGNC Symbol;Acc:HGNC:2379]
ENSCJAG00000005292	KNOWN	protein_coding	SRPX	chromosome:C_jacchus3.2.1:X:1:142054208:1	36890921	36967221	R	Sushi repeat-containing protein SRPX isoform 2 {ECO:0000313|EMBL:JAB03357.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009752}  [Source:UniProtKB/TrEMBL;Acc:F7GWV9]
ENSCJAG00000021301	KNOWN_BY_PROJECTION	protein_coding	TCERG1	chromosome:C_jacchus3.2.1:2:1:204313951:1	43635386	43697775	D	transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
ENSCJAG00000015869	KNOWN	protein_coding	AIFM3	chromosome:C_jacchus3.2.1:1:1:210400635:1	185095001	185112556	R	Apoptosis-inducing factor 3 isoform 1 {ECO:0000313|EMBL:JAB20752.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029298}  [Source:UniProtKB/TrEMBL;Acc:F7ILY8]
ENSCJAG00000007394	KNOWN_BY_PROJECTION	protein_coding	SH3GL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	4063135	4100791	R	SH3-domain GRB2-like 1 [Source:HGNC Symbol;Acc:HGNC:10830]
ENSCJAG00000012044	KNOWN_BY_PROJECTION	protein_coding	TM4SF5	chromosome:C_jacchus3.2.1:5:1:159171411:1	96916194	96922341	D	transmembrane 4 L six family member 5 [Source:HGNC Symbol;Acc:HGNC:11857]
ENSCJAG00000012039	KNOWN	protein_coding	VMO1	chromosome:C_jacchus3.2.1:5:1:159171411:1	96935742	96938396	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022098}; Vitelline membrane outer layer protein 1 homolog isoform 1 {ECO:0000313|EMBL:JAB04653.1}  [Source:UniProtKB/TrEMBL;Acc:F6ZBZ2]
ENSCJAG00000007402	KNOWN_BY_PROJECTION	protein_coding	CHAF1A	chromosome:C_jacchus3.2.1:22:1:49145316:1	4112993	4156135	D	chromatin assembly factor 1, subunit A (p150) [Source:HGNC Symbol;Acc:HGNC:1910]
ENSCJAG00000015868	NOVEL	pseudogene	ENSCJAG00000015868	chromosome:C_jacchus3.2.1:1:1:210400635:1	185120406	185120886	D	<no descrition>
ENSCJAG00000015862	KNOWN	protein_coding	CRKL	chromosome:C_jacchus3.2.1:1:1:210400635:1	185127735	185162081	R	Crk-like protein {ECO:0000313|EMBL:JAB04946.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029210}  [Source:UniProtKB/TrEMBL;Acc:F7HYH0]
ENSCJAG00000012028	KNOWN	protein_coding	GLTPD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	96940271	96941689	D	Glycolipid transfer protein domain-containing protein 2 {ECO:0000313|EMBL:JAB03057.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022086}  [Source:UniProtKB/TrEMBL;Acc:F6ZU30]
ENSCJAG00000015857	KNOWN	protein_coding	SNAP29	chromosome:C_jacchus3.2.1:1:1:210400635:1	185199580	185229051	R	Synaptosomal-associated protein {ECO:0000256|RuleBase:RU003496}  [Source:UniProtKB/TrEMBL;Acc:F7I0S8]
ENSCJAG00000012010	KNOWN_BY_PROJECTION	protein_coding	PSMB6	chromosome:C_jacchus3.2.1:5:1:159171411:1	96946163	96948756	D	proteasome (prosome, macropain) subunit, beta type, 6 [Source:HGNC Symbol;Acc:HGNC:9543]
ENSCJAG00000007418	KNOWN_BY_PROJECTION	protein_coding	UBXN6	chromosome:C_jacchus3.2.1:22:1:49145316:1	4158057	4166853	R	UBX domain protein 6 [Source:HGNC Symbol;Acc:HGNC:14928]
ENSCJAG00000020527	KNOWN_BY_PROJECTION	protein_coding	ANKRD16	chromosome:C_jacchus3.2.1:7:1:155834243:1	4412829	4423738	R	ankyrin repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:23471]
ENSCJAG00000011986	KNOWN_BY_PROJECTION	protein_coding	SUSD5	chromosome:C_jacchus3.2.1:17:1:74750902:1	63790223	63847439	R	sushi domain containing 5 [Source:HGNC Symbol;Acc:HGNC:29061]
ENSCJAG00000019440	KNOWN_BY_PROJECTION	protein_coding	HSPA12A	chromosome:C_jacchus3.2.1:12:1:121768101:1	104406112	104482016	R	heat shock 70kDa protein 12A [Source:HGNC Symbol;Acc:HGNC:19022]
ENSCJAG00000011988	NOVEL	pseudogene	ENSCJAG00000011988	chromosome:C_jacchus3.2.1:17:1:74750902:1	63797444	63798273	R	<no descrition>
ENSCJAG00000021299	KNOWN	protein_coding	PPP2R2B	chromosome:C_jacchus3.2.1:2:1:204313951:1	43784615	44264093	R	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256|RuleBase:RU331113}  [Source:UniProtKB/TrEMBL;Acc:F7GGA2]
ENSCJAG00000011993	NOVEL	protein_coding	ENSCJAG00000011993	chromosome:C_jacchus3.2.1:17:1:74750902:1	63872969	63874905	D	<no descrition>
ENSCJAG00000012006	KNOWN_BY_PROJECTION	protein_coding	FBXL2	chromosome:C_jacchus3.2.1:17:1:74750902:1	63958089	63993773	D	F-box and leucine-rich repeat protein 2 [Source:HGNC Symbol;Acc:HGNC:13598]
ENSCJAG00000014013	KNOWN_BY_PROJECTION	protein_coding	HGFAC	chromosome:C_jacchus3.2.1:3:1:190850796:1	187346025	187354662	R	HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
ENSCJAG00000017556	NOVEL	protein_coding	ENSCJAG00000017556	chromosome:C_jacchus3.2.1:22:1:49145316:1	4176982	4351676	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050849}  [Source:UniProtKB/TrEMBL;Acc:F7FNG2]
ENSCJAG00000015845	KNOWN_BY_PROJECTION	protein_coding	PI4KA	chromosome:C_jacchus3.2.1:1:1:210400635:1	185229342	185386637	D	phosphatidylinositol 4-kinase, catalytic, alpha [Source:HGNC Symbol;Acc:HGNC:8983]
ENSCJAG00000008602	KNOWN	protein_coding	SLC25A24	chromosome:C_jacchus3.2.1:7:1:155834243:1	144228207	144278579	R	Calcium-binding mitochondrial carrier protein SCaMC-1 isoform 1 {ECO:0000313|EMBL:JAB19943.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015865}  [Source:UniProtKB/TrEMBL;Acc:F7GG17]
ENSCJAG00000011918	KNOWN	protein_coding	PLD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	96955856	96971721	D	Phospholipase D2 isoform PLD2A {ECO:0000313|EMBL:JAB03355.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022043}  [Source:UniProtKB/TrEMBL;Acc:F7AVC9]
ENSCJAG00000006901	KNOWN_BY_PROJECTION	protein_coding	TSSK4	chromosome:C_jacchus3.2.1:10:1:132174527:1	48249456	48252509	D	testis-specific serine kinase 4 [Source:HGNC Symbol;Acc:HGNC:19825]
ENSCJAG00000021300	NOVEL	pseudogene	ENSCJAG00000021300	chromosome:C_jacchus3.2.1:2:1:204313951:1	43957305	43957801	D	<no descrition>
ENSCJAG00000017544	KNOWN_BY_PROJECTION	protein_coding	PLIN4	chromosome:C_jacchus3.2.1:22:1:49145316:1	4206736	4223243	R	perilipin 4 [Source:HGNC Symbol;Acc:HGNC:29393]
ENSCJAG00000035829	KNOWN_BY_PROJECTION	protein_coding	MDP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	48256787	48259631	R	magnesium-dependent phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28781]
ENSCJAG00000006876	KNOWN	protein_coding	ENSCJAG00000006876	chromosome:C_jacchus3.2.1:10:1:132174527:1	48261080	48270633	R	NEDD8 {ECO:0000313|EMBL:JAB25570.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012730}  [Source:UniProtKB/TrEMBL;Acc:F6S338]
ENSCJAG00000021297	KNOWN_BY_PROJECTION	protein_coding	STK32A	chromosome:C_jacchus3.2.1:2:1:204313951:1	44438846	44586531	D	serine/threonine kinase 32A [Source:HGNC Symbol;Acc:HGNC:28317]
ENSCJAG00000017538	KNOWN	protein_coding	PLIN5	chromosome:C_jacchus3.2.1:22:1:49145316:1	4228331	4241787	R	Perilipin {ECO:0000256|PIRNR:PIRNR036881}  [Source:UniProtKB/TrEMBL;Acc:F7GWF3]
ENSCJAG00000002480	KNOWN_BY_PROJECTION	protein_coding	FAM102B	chromosome:C_jacchus3.2.1:7:1:155834243:1	144418770	144458710	D	family with sequence similarity 102, member B [Source:HGNC Symbol;Acc:HGNC:27637]
ENSCJAG00000002490	NOVEL	pseudogene	ENSCJAG00000002490	chromosome:C_jacchus3.2.1:7:1:155834243:1	144464094	144464626	D	<no descrition>
ENSCJAG00000012030	KNOWN	protein_coding	UBP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	63995717	64046324	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022186}; Upstream-binding protein 1 isoform LBP-1b {ECO:0000313|EMBL:JAB07049.1}  [Source:UniProtKB/TrEMBL;Acc:F6WEF7]
ENSCJAG00000020531	KNOWN	protein_coding	FBXO18	chromosome:C_jacchus3.2.1:7:1:155834243:1	4424080	4470736	D	F-box only protein 18 isoform 2 {ECO:0000313|EMBL:JAB04370.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038203}  [Source:UniProtKB/TrEMBL;Acc:F7HQG1]
ENSCJAG00000019457	KNOWN_BY_PROJECTION	protein_coding	KIAA1598	chromosome:C_jacchus3.2.1:12:1:121768101:1	104549708	104849329	R	KIAA1598 [Source:HGNC Symbol;Acc:HGNC:29319]
ENSCJAG00000002494	KNOWN	protein_coding	HENMT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	144470685	144484307	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004557}  [Source:UniProtKB/TrEMBL;Acc:F7C494]
ENSCJAG00000020567	KNOWN_BY_PROJECTION	protein_coding	IL15RA	chromosome:C_jacchus3.2.1:7:1:155834243:1	4482320	4514557	R	interleukin 15 receptor, alpha [Source:HGNC Symbol;Acc:HGNC:5978]
ENSCJAG00000020562	KNOWN	protein_coding	IL2RA	chromosome:C_jacchus3.2.1:7:1:155834243:1	4543944	4604186	R	Callithrix jacchus interleukin 2 receptor, alpha (IL2RA), mRNA. [Source:RefSeq mRNA;Acc:NM_001257218]
ENSCJAG00000035019	KNOWN_BY_PROJECTION	protein_coding	ATP6V1E1	chromosome:C_jacchus3.2.1:17:1:74750902:1	64083064	64083739	R	ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:HGNC:857]
ENSCJAG00000021289	KNOWN	protein_coding	DPYSL3	chromosome:C_jacchus3.2.1:2:1:204313951:1	44595648	44715508	R	Dihydropyrimidinase-related protein 3 isoform 2 {ECO:0000313|EMBL:JAB06898.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039632}  [Source:UniProtKB/TrEMBL;Acc:F7GP06]
ENSCJAG00000006792	KNOWN_BY_PROJECTION	protein_coding	GMPR2	chromosome:C_jacchus3.2.1:10:1:132174527:1	48270723	48278121	D	guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]
ENSCJAG00000012094	KNOWN_BY_PROJECTION	protein_coding	CLASP2	chromosome:C_jacchus3.2.1:17:1:74750902:1	64088589	64217785	R	cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
ENSCJAG00000020573	KNOWN	protein_coding	RBM17	chromosome:C_jacchus3.2.1:7:1:155834243:1	4626517	4655915	D	Splicing factor 45 {ECO:0000313|EMBL:JAB04677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038255}  [Source:UniProtKB/TrEMBL;Acc:F7INM9]
ENSCJAG00000009188	NOVEL	protein_coding	ENSCJAG00000009188	chromosome:C_jacchus3.2.1:9:1:124281992:1	109136922	109138174	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016826}  [Source:UniProtKB/TrEMBL;Acc:F6Y0Q0]
ENSCJAG00000031449	NOVEL	pseudogene	ENSCJAG00000031449	chromosome:C_jacchus3.2.1:17:1:74750902:1	64240897	64242654	D	<no descrition>
ENSCJAG00000009146	KNOWN_BY_PROJECTION	protein_coding	SRRM4	chromosome:C_jacchus3.2.1:9:1:124281992:1	109748362	109922510	D	serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
ENSCJAG00000002510	KNOWN_BY_PROJECTION	protein_coding	PRPF38B	chromosome:C_jacchus3.2.1:7:1:155834243:1	144510970	144612689	D	pre-mRNA processing factor 38B [Source:HGNC Symbol;Acc:HGNC:25512]
ENSCJAG00000014023	KNOWN_BY_PROJECTION	protein_coding	RGS12	chromosome:C_jacchus3.2.1:3:1:190850796:1	187358617	187530842	R	regulator of G-protein signaling 12 [Source:HGNC Symbol;Acc:HGNC:9994]
ENSCJAG00000017537	KNOWN_BY_PROJECTION	protein_coding	LRG1	chromosome:C_jacchus3.2.1:22:1:49145316:1	4245565	4248047	R	leucine-rich alpha-2-glycoprotein 1 [Source:HGNC Symbol;Acc:HGNC:29480]
ENSCJAG00000033665	NOVEL	protein_coding	ENSCJAG00000033665	chromosome:C_jacchus3.2.1:2:1:204313951:1	44747467	44749504	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050820}  [Source:UniProtKB/TrEMBL;Acc:F7GDB5]
ENSCJAG00000017503	KNOWN	protein_coding	C19ORF10	chromosome:C_jacchus3.2.1:22:1:49145316:1	4368779	4383553	R	UPF0556 protein C19orf10 {ECO:0000313|EMBL:JAB13303.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032233}  [Source:UniProtKB/TrEMBL;Acc:F7EEH4]
ENSCJAG00000009139	KNOWN	protein_coding	HSPB8	chromosome:C_jacchus3.2.1:9:1:124281992:1	109940213	109959232	D	Heat shock protein beta-8 {ECO:0000313|EMBL:JAB17467.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016757}  [Source:UniProtKB/TrEMBL;Acc:F7ALK2]
ENSCJAG00000012204	KNOWN_BY_PROJECTION	protein_coding	PDCD6IP	chromosome:C_jacchus3.2.1:17:1:74750902:1	64399338	64471584	D	programmed cell death 6 interacting protein [Source:HGNC Symbol;Acc:HGNC:8766]
ENSCJAG00000020586	KNOWN_BY_PROJECTION	protein_coding	PFKFB3	chromosome:C_jacchus3.2.1:7:1:155834243:1	4686502	4771969	D	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Source:HGNC Symbol;Acc:HGNC:8874]
ENSCJAG00000014060	NOVEL	protein_coding	ENSCJAG00000014060	chromosome:C_jacchus3.2.1:3:1:190850796:1	187492099	187492891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025847}  [Source:UniProtKB/TrEMBL;Acc:F7ADJ2]
ENSCJAG00000014062	KNOWN	protein_coding	MSANTD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	187574741	187583338	R	Myb/SANT-like DNA-binding domain-containing protein 1 {ECO:0000313|EMBL:JAB20601.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025854}  [Source:UniProtKB/TrEMBL;Acc:F7ACG7]
ENSCJAG00000017466	KNOWN_BY_PROJECTION	protein_coding	DPP9	chromosome:C_jacchus3.2.1:22:1:49145316:1	4394836	4447289	R	dipeptidyl-peptidase 9 [Source:HGNC Symbol;Acc:HGNC:18648]
ENSCJAG00000021276	KNOWN	protein_coding	JAKMIP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	44820199	45027749	R	Janus kinase and microtubule-interacting protein 2 isoform 3 {ECO:0000313|EMBL:JAB24563.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039603}  [Source:UniProtKB/TrEMBL;Acc:F7GZC4]
ENSCJAG00000020771	KNOWN_BY_PROJECTION	protein_coding	RPGR	chromosome:C_jacchus3.2.1:X:1:142054208:1	36913734	37095813	R	retinitis pigmentosa GTPase regulator [Source:HGNC Symbol;Acc:HGNC:10295]
ENSCJAG00000017499	NOVEL	protein_coding	ENSCJAG00000017499	chromosome:C_jacchus3.2.1:22:1:49145316:1	4402907	4403529	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032228}  [Source:UniProtKB/TrEMBL;Acc:F7EEV5]
ENSCJAG00000017497	NOVEL	pseudogene	ENSCJAG00000017497	chromosome:C_jacchus3.2.1:22:1:49145316:1	4432157	4432727	R	<no descrition>
ENSCJAG00000017463	KNOWN	protein_coding	FEM1A	chromosome:C_jacchus3.2.1:22:1:49145316:1	4531928	4534085	D	Protein fem-1 homolog A {ECO:0000313|EMBL:JAB06064.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045326}  [Source:UniProtKB/TrEMBL;Acc:F6THC1]
ENSCJAG00000015854	KNOWN_BY_PROJECTION	protein_coding	SERPIND1	chromosome:C_jacchus3.2.1:1:1:210400635:1	185305073	185318768	R	serpin peptidase inhibitor, clade D (heparin cofactor), member 1 [Source:HGNC Symbol;Acc:HGNC:4838]
ENSCJAG00000017459	KNOWN_BY_PROJECTION	protein_coding	TICAM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	4562138	4563827	R	toll-like receptor adaptor molecule 1 [Source:HGNC Symbol;Acc:HGNC:18348]
ENSCJAG00000015839	KNOWN_BY_PROJECTION	protein_coding	TMEM191B	chromosome:C_jacchus3.2.1:1:1:210400635:1	185389949	185390584	R	transmembrane protein 191B [Source:HGNC Symbol;Acc:HGNC:33600]
ENSCJAG00000017442	KNOWN_BY_PROJECTION	protein_coding	PLIN3	chromosome:C_jacchus3.2.1:22:1:49145316:1	4576980	4599531	R	perilipin 3 [Source:HGNC Symbol;Acc:HGNC:16893]
ENSCJAG00000015834	NOVEL	protein_coding	ENSCJAG00000015834	chromosome:C_jacchus3.2.1:1:1:210400635:1	185475078	185480271	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029169}  [Source:UniProtKB/TrEMBL;Acc:F7I7W8]
ENSCJAG00000002532	KNOWN_BY_PROJECTION	protein_coding	FNDC7	chromosome:C_jacchus3.2.1:7:1:155834243:1	144533310	144564982	D	fibronectin type III domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26668]
ENSCJAG00000010305	KNOWN_BY_PROJECTION	protein_coding	COX7A2	chromosome:C_jacchus3.2.1:4:1:171630274:1	73505346	73510298	R	cytochrome c oxidase subunit VIIa polypeptide 2 (liver) [Source:HGNC Symbol;Acc:HGNC:2288]
ENSCJAG00000017437	KNOWN_BY_PROJECTION	protein_coding	ARRDC5	chromosome:C_jacchus3.2.1:22:1:49145316:1	4620891	4633290	R	arrestin domain containing 5 [Source:HGNC Symbol;Acc:HGNC:31407]
ENSCJAG00000015818	KNOWN	protein_coding	UBE2L3	chromosome:C_jacchus3.2.1:1:1:210400635:1	185509454	185569418	D	Ubiquitin-conjugating enzyme E2 L3 isoform 1 {ECO:0000313|EMBL:JAB17445.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029157}  [Source:UniProtKB/TrEMBL;Acc:F7I7Z9]
ENSCJAG00000010325	KNOWN	protein_coding	TMEM30A	chromosome:C_jacchus3.2.1:4:1:171630274:1	73530950	73566646	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019055}  [Source:UniProtKB/TrEMBL;Acc:F6THQ5]
ENSCJAG00000002539	KNOWN	protein_coding	STXBP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	144568958	144646142	D	Syntaxin-binding protein 3 {ECO:0000313|EMBL:JAB03859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004688}  [Source:UniProtKB/TrEMBL;Acc:F6W7C3]
ENSCJAG00000011830	NOVEL	protein_coding	MINK	chromosome:C_jacchus3.2.1:5:1:159171411:1	97021153	97041074	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021869}  [Source:UniProtKB/TrEMBL;Acc:F6QXY3]
ENSCJAG00000014069	KNOWN_BY_PROJECTION	protein_coding	HTT	chromosome:C_jacchus3.2.1:3:1:190850796:1	187593106	187751498	R	huntingtin [Source:HGNC Symbol;Acc:HGNC:4851]
ENSCJAG00000020593	NOVEL	pseudogene	ENSCJAG00000020593	chromosome:C_jacchus3.2.1:7:1:155834243:1	4867846	4868365	D	<no descrition>
ENSCJAG00000011799	NOVEL	protein_coding	CHRNE	chromosome:C_jacchus3.2.1:5:1:159171411:1	97042089	97046979	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021678}  [Source:UniProtKB/TrEMBL;Acc:F6QPL5]
ENSCJAG00000017420	KNOWN_BY_PROJECTION	protein_coding	UHRF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	4640987	4693188	D	ubiquitin-like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]
ENSCJAG00000020594	KNOWN_BY_PROJECTION	protein_coding	PRKCQ	chromosome:C_jacchus3.2.1:7:1:155834243:1	4923300	5072938	R	protein kinase C, theta [Source:HGNC Symbol;Acc:HGNC:9410]
ENSCJAG00000011819	KNOWN_BY_PROJECTION	protein_coding	C17orf107	chromosome:C_jacchus3.2.1:5:1:159171411:1	97042973	97046846	D	chromosome 17 open reading frame 107 [Source:HGNC Symbol;Acc:HGNC:37238]
ENSCJAG00000011794	KNOWN_BY_PROJECTION	protein_coding	GP1BA	chromosome:C_jacchus3.2.1:5:1:159171411:1	97078410	97080473	D	glycoprotein Ib (platelet), alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:4439]
ENSCJAG00000021274	KNOWN_BY_PROJECTION	protein_coding	SPINK1	chromosome:C_jacchus3.2.1:2:1:204313951:1	45075626	45082894	R	serine peptidase inhibitor, Kazal type 1 [Source:HGNC Symbol;Acc:HGNC:11244]
ENSCJAG00000021272	NOVEL	protein_coding	ENSCJAG00000021272	chromosome:C_jacchus3.2.1:2:1:204313951:1	45109800	45110782	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039593}  [Source:UniProtKB/TrEMBL;Acc:F7HEY5]
ENSCJAG00000021268	KNOWN_BY_PROJECTION	protein_coding	SCGB3A2	chromosome:C_jacchus3.2.1:2:1:204313951:1	45138290	45141771	D	secretoglobin, family 3A, member 2 [Source:HGNC Symbol;Acc:HGNC:18391]
ENSCJAG00000011768	KNOWN	protein_coding	SLC25A11	chromosome:C_jacchus3.2.1:5:1:159171411:1	97083334	97086407	R	Mitochondrial 2-oxoglutarate/malate carrier protein isoform 1 {ECO:0000313|EMBL:JAB04539.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021638}  [Source:UniProtKB/TrEMBL;Acc:F6RKX7]
ENSCJAG00000021265	KNOWN_BY_PROJECTION	protein_coding	C5orf46	chromosome:C_jacchus3.2.1:2:1:204313951:1	45152624	45166481	R	chromosome 5 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:33768]
ENSCJAG00000021264	NOVEL	pseudogene	ENSCJAG00000021264	chromosome:C_jacchus3.2.1:2:1:204313951:1	45313038	45315416	R	<no descrition>
ENSCJAG00000009136	NOVEL	pseudogene	ENSCJAG00000009136	chromosome:C_jacchus3.2.1:9:1:124281992:1	110045883	110046214	R	<no descrition>
ENSCJAG00000009133	KNOWN_BY_PROJECTION	protein_coding	CCDC60	chromosome:C_jacchus3.2.1:9:1:124281992:1	110249883	110320920	D	coiled-coil domain containing 60 [Source:HGNC Symbol;Acc:HGNC:28610]
ENSCJAG00000009132	KNOWN	protein_coding	TMEM233	chromosome:C_jacchus3.2.1:9:1:124281992:1	110388061	110436104	D	Transmembrane protein 233 {ECO:0000313|EMBL:JAB34671.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016728}  [Source:UniProtKB/TrEMBL;Acc:F7BMF7]
ENSCJAG00000006774	KNOWN_BY_PROJECTION	protein_coding	TINF2	chromosome:C_jacchus3.2.1:10:1:132174527:1	48278179	48281970	R	TERF1 (TRF1)-interacting nuclear factor 2 [Source:HGNC Symbol;Acc:HGNC:11824]
ENSCJAG00000009119	KNOWN	protein_coding	PRKAB1	chromosome:C_jacchus3.2.1:9:1:124281992:1	110465819	110478412	D	5'-AMP-activated protein kinase subunit beta-1 {ECO:0000313|EMBL:JAB01612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016725}  [Source:UniProtKB/TrEMBL;Acc:F7BMG6]
ENSCJAG00000015809	KNOWN_BY_PROJECTION	protein_coding	YDJC	chromosome:C_jacchus3.2.1:1:1:210400635:1	185573361	185575445	R	YdjC homolog (bacterial) [Source:HGNC Symbol;Acc:HGNC:27158]
ENSCJAG00000011735	KNOWN_BY_PROJECTION	protein_coding	RNF167	chromosome:C_jacchus3.2.1:5:1:159171411:1	97086576	97092254	D	ring finger protein 167 [Source:HGNC Symbol;Acc:HGNC:24544]
ENSCJAG00000021245	KNOWN_BY_PROJECTION	protein_coding	SPINK5	chromosome:C_jacchus3.2.1:2:1:204313951:1	45365822	45438511	D	serine peptidase inhibitor, Kazal type 5 [Source:HGNC Symbol;Acc:HGNC:15464]
ENSCJAG00000020777	KNOWN_BY_PROJECTION	protein_coding	OTC	chromosome:C_jacchus3.2.1:X:1:142054208:1	37123158	37196079	D	ornithine carbamoyltransferase [Source:HGNC Symbol;Acc:HGNC:8512]
ENSCJAG00000015805	KNOWN_BY_PROJECTION	protein_coding	CCDC116	chromosome:C_jacchus3.2.1:1:1:210400635:1	185578794	185582883	D	coiled-coil domain containing 116 [Source:HGNC Symbol;Acc:HGNC:26688]
ENSCJAG00000020605	NOVEL	protein_coding	ENSCJAG00000020605	chromosome:C_jacchus3.2.1:7:1:155834243:1	5551396	5552501	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049076}  [Source:UniProtKB/TrEMBL;Acc:F6WN86]
ENSCJAG00000020606	NOVEL	pseudogene	ENSCJAG00000020606	chromosome:C_jacchus3.2.1:7:1:155834243:1	5554237	5555097	D	<no descrition>
ENSCJAG00000017363	KNOWN	protein_coding	KDM4B	chromosome:C_jacchus3.2.1:22:1:49145316:1	4753545	4890673	D	Lysine-specific demethylase 4B {ECO:0000313|EMBL:JAB23479.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031985}  [Source:UniProtKB/TrEMBL;Acc:F7IRD4]
ENSCJAG00000020608	KNOWN_BY_PROJECTION	protein_coding	SFMBT2	chromosome:C_jacchus3.2.1:7:1:155834243:1	5617604	5879686	R	Scm-like with four mbt domains 2 [Source:HGNC Symbol;Acc:HGNC:20256]
ENSCJAG00000015792	KNOWN	protein_coding	SDF2L1	chromosome:C_jacchus3.2.1:1:1:210400635:1	185585574	185587619	D	Stromal cell-derived factor 2-like protein 1 {ECO:0000313|EMBL:JAB25147.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029091}  [Source:UniProtKB/TrEMBL;Acc:F7IM47]
ENSCJAG00000015791	NOVEL	protein_coding	ENSCJAG00000015791	chromosome:C_jacchus3.2.1:1:1:210400635:1	185611172	185612883	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029069}  [Source:UniProtKB/TrEMBL;Acc:F7IRR8]
ENSCJAG00000002585	NOVEL	protein_coding	ENSCJAG00000002585	chromosome:C_jacchus3.2.1:7:1:155834243:1	144652297	144694802	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004722}  [Source:UniProtKB/TrEMBL;Acc:F7BNC2]
ENSCJAG00000010350	KNOWN	protein_coding	FILIP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	73576586	73794488	R	Filamin-A-interacting protein 1 {ECO:0000313|EMBL:JAB35555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019090}  [Source:UniProtKB/TrEMBL;Acc:F6SUX4]
ENSCJAG00000015771	KNOWN	protein_coding	PPIL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	185616006	185650576	D	Peptidyl-prolyl cis-trans isomerase-like 2 isoform a {ECO:0000313|EMBL:JAB05229.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029066}  [Source:UniProtKB/TrEMBL;Acc:F7IRS0]
ENSCJAG00000012301	KNOWN	protein_coding	ARPP21	chromosome:C_jacchus3.2.1:17:1:74750902:1	66236501	66402075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022608}; cAMP-regulated phosphoprotein 21 isoform 2 {ECO:0000313|EMBL:JAB23084.1}  [Source:UniProtKB/TrEMBL;Acc:F7HZ07]
ENSCJAG00000021244	KNOWN_BY_PROJECTION	protein_coding	SPINK14	chromosome:C_jacchus3.2.1:2:1:204313951:1	45453127	45454292	D	serine peptidase inhibitor, Kazal type 14 (putative) [Source:HGNC Symbol;Acc:HGNC:33825]
ENSCJAG00000021243	KNOWN_BY_PROJECTION	protein_coding	SPINK6	chromosome:C_jacchus3.2.1:2:1:204313951:1	45478793	45491343	D	serine peptidase inhibitor, Kazal type 6 [Source:HGNC Symbol;Acc:HGNC:29486]
ENSCJAG00000021238	KNOWN_BY_PROJECTION	protein_coding	SPINK7	chromosome:C_jacchus3.2.1:2:1:204313951:1	45725838	45729577	D	serine peptidase inhibitor, Kazal type 7 (putative) [Source:HGNC Symbol;Acc:HGNC:24643]
ENSCJAG00000021232	KNOWN_BY_PROJECTION	protein_coding	SPINK9	chromosome:C_jacchus3.2.1:2:1:204313951:1	45739717	45744253	D	serine peptidase inhibitor, Kazal type 9 [Source:HGNC Symbol;Acc:HGNC:32951]
ENSCJAG00000009005	KNOWN_BY_PROJECTION	protein_coding	CIT	chromosome:C_jacchus3.2.1:9:1:124281992:1	110483921	110675057	R	citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
ENSCJAG00000020618	KNOWN_BY_PROJECTION	protein_coding	ITIH5	chromosome:C_jacchus3.2.1:7:1:155834243:1	6016642	6116791	R	inter-alpha-trypsin inhibitor heavy chain family, member 5 [Source:HGNC Symbol;Acc:HGNC:21449]
ENSCJAG00000011719	KNOWN	protein_coding	PFN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	97092726	97096009	R	Profilin {ECO:0000256|RuleBase:RU003909}  [Source:UniProtKB/TrEMBL;Acc:F6PID5]
ENSCJAG00000010386	KNOWN	protein_coding	SENP6	chromosome:C_jacchus3.2.1:4:1:171630274:1	73924961	74044020	D	Sentrin-specific protease 6 isoform 2 {ECO:0000313|EMBL:JAB33913.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019434}  [Source:UniProtKB/TrEMBL;Acc:F6TQ97]
ENSCJAG00000021201	KNOWN_BY_PROJECTION	protein_coding	FBXO38	chromosome:C_jacchus3.2.1:2:1:204313951:1	45791083	45849154	D	F-box protein 38 [Source:HGNC Symbol;Acc:HGNC:28844]
ENSCJAG00000011679	NOVEL	protein_coding	ENSCJAG00000011679	chromosome:C_jacchus3.2.1:5:1:159171411:1	97098142	97106680	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021487}  [Source:UniProtKB/TrEMBL;Acc:F6QR75]
ENSCJAG00000020625	KNOWN_BY_PROJECTION	protein_coding	ITIH2	chromosome:C_jacchus3.2.1:7:1:155834243:1	6140554	6182029	D	inter-alpha-trypsin inhibitor heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:6167]
ENSCJAG00000012350	KNOWN_BY_PROJECTION	protein_coding	STAC	chromosome:C_jacchus3.2.1:17:1:74750902:1	66938311	67091518	D	SH3 and cysteine rich domain [Source:HGNC Symbol;Acc:HGNC:11353]
ENSCJAG00000011659	KNOWN	protein_coding	SPAG7	chromosome:C_jacchus3.2.1:5:1:159171411:1	97108754	97118349	R	Sperm-associated antigen 7 {ECO:0000313|EMBL:JAB11392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021440}  [Source:UniProtKB/TrEMBL;Acc:F6RMJ2]
ENSCJAG00000015755	KNOWN_BY_PROJECTION	protein_coding	YPEL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	185653928	185685592	R	yippee-like 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:12845]
ENSCJAG00000000758	KNOWN	protein_coding	TSPAN7	chromosome:C_jacchus3.2.1:X:1:142054208:1	37338105	37461864	D	Tetraspanin-7 {ECO:0000313|EMBL:JAB38156.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001334}  [Source:UniProtKB/TrEMBL;Acc:F7CEL7]
ENSCJAG00000002616	KNOWN	protein_coding	GPSM2	chromosome:C_jacchus3.2.1:7:1:155834243:1	144716218	144767988	D	G-protein-signaling modulator 2 {ECO:0000313|EMBL:JAB14697.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048830}  [Source:UniProtKB/TrEMBL;Acc:F6T902]
ENSCJAG00000017261	KNOWN_BY_PROJECTION	protein_coding	PTPRS	chromosome:C_jacchus3.2.1:22:1:49145316:1	4940255	5024285	R	protein tyrosine phosphatase, receptor type, S [Source:HGNC Symbol;Acc:HGNC:9681]
ENSCJAG00000002641	KNOWN_BY_PROJECTION	protein_coding	CLCC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	144774283	144791071	R	chloride channel CLIC-like 1 [Source:HGNC Symbol;Acc:HGNC:29675]
ENSCJAG00000015743	KNOWN	protein_coding	MAPK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	185715534	185823931	R	Mitogen-activated protein kinase {ECO:0000256|RuleBase:RU361165}  [Source:UniProtKB/TrEMBL;Acc:F7AKA7]
ENSCJAG00000017256	NOVEL	protein_coding	ENSCJAG00000017256	chromosome:C_jacchus3.2.1:22:1:49145316:1	5283147	5292083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031742}  [Source:UniProtKB/TrEMBL;Acc:F7HVY2]
ENSCJAG00000019455	KNOWN	protein_coding	ENO4	chromosome:C_jacchus3.2.1:12:1:121768101:1	104592147	104624004	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047012}  [Source:UniProtKB/TrEMBL;Acc:F7IDM7]
ENSCJAG00000011609	KNOWN_BY_PROJECTION	protein_coding	CAMTA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	97118513	97140583	R	calmodulin binding transcription activator 2 [Source:HGNC Symbol;Acc:HGNC:18807]
ENSCJAG00000002658	KNOWN	protein_coding	WDR47	chromosome:C_jacchus3.2.1:7:1:155834243:1	144807090	144895403	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004877}  [Source:UniProtKB/TrEMBL;Acc:F6XBU4]
ENSCJAG00000034666	NOVEL	pseudogene	ENSCJAG00000034666	chromosome:C_jacchus3.2.1:1:1:210400635:1	185730848	185731839	D	<no descrition>
ENSCJAG00000017205	KNOWN_BY_PROJECTION	protein_coding	SAFB2	chromosome:C_jacchus3.2.1:22:1:49145316:1	5310758	5346746	R	scaffold attachment factor B2 [Source:HGNC Symbol;Acc:HGNC:21605]
ENSCJAG00000019496	KNOWN_BY_PROJECTION	protein_coding	VAX1	chromosome:C_jacchus3.2.1:12:1:121768101:1	104854698	104861150	R	ventral anterior homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12660]
ENSCJAG00000020350	KNOWN	protein_coding	PPM1F	chromosome:C_jacchus3.2.1:1:1:210400635:1	185878965	185903682	R	Protein phosphatase 1F {ECO:0000313|EMBL:JAB07346.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037827}  [Source:UniProtKB/TrEMBL;Acc:F7AD27]
ENSCJAG00000020354	NOVEL	pseudogene	ENSCJAG00000020354	chromosome:C_jacchus3.2.1:1:1:210400635:1	185896422	185898048	D	<no descrition>
ENSCJAG00000014107	KNOWN_BY_PROJECTION	protein_coding	MMP1	chromosome:C_jacchus3.2.1:3:1:190850796:1	187770791	187779261	D	matrix metallopeptidase 1 (interstitial collagenase) [Source:HGNC Symbol;Acc:HGNC:7155]
ENSCJAG00000020631	KNOWN	protein_coding	KIN	chromosome:C_jacchus3.2.1:7:1:155834243:1	6182693	6210361	R	DNA/RNA-binding protein KIN17 {ECO:0000313|EMBL:JAB03864.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038357}  [Source:UniProtKB/TrEMBL;Acc:F7I709]
ENSCJAG00000021192	KNOWN	protein_coding	HTR4	chromosome:C_jacchus3.2.1:2:1:204313951:1	45859366	46074447	R	5-hydroxytryptamine receptor 4 isoform a {ECO:0000313|EMBL:JAB23847.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039473}  [Source:UniProtKB/TrEMBL;Acc:F7FE43]
ENSCJAG00000006740	KNOWN	protein_coding	TGM1	chromosome:C_jacchus3.2.1:10:1:132174527:1	48287708	48302540	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012522}  [Source:UniProtKB/TrEMBL;Acc:F7H2Y5]
ENSCJAG00000012380	KNOWN	protein_coding	DCLK3	chromosome:C_jacchus3.2.1:17:1:74750902:1	67225968	67252508	R	Serine/threonine-protein kinase DCLK3 {ECO:0000313|EMBL:JAB27344.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022673}  [Source:UniProtKB/TrEMBL;Acc:F7IS61]
ENSCJAG00000019505	KNOWN_BY_PROJECTION	protein_coding	KCNK18	chromosome:C_jacchus3.2.1:12:1:121768101:1	104924656	104937855	D	potassium channel, two pore domain subfamily K, member 18 [Source:HGNC Symbol;Acc:HGNC:19439]
ENSCJAG00000020334	KNOWN	protein_coding	TOP3B	chromosome:C_jacchus3.2.1:1:1:210400635:1	185914249	185940256	R	DNA topoisomerase {ECO:0000256|RuleBase:RU000518}  [Source:UniProtKB/TrEMBL;Acc:F7ADD1]
ENSCJAG00000019511	KNOWN_BY_PROJECTION	protein_coding	SLC18A2	chromosome:C_jacchus3.2.1:12:1:121768101:1	104976342	105015931	D	solute carrier family 18 (vesicular monoamine transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10935]
ENSCJAG00000012388	KNOWN_BY_PROJECTION	protein_coding	TRANK1	chromosome:C_jacchus3.2.1:17:1:74750902:1	67330358	67443055	R	tetratricopeptide repeat and ankyrin repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:29011]
ENSCJAG00000002701	KNOWN	protein_coding	TAF13	chromosome:C_jacchus3.2.1:7:1:155834243:1	144919100	144934146	R	Transcription initiation factor TFIID subunit 13 {ECO:0000313|EMBL:JAB17714.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004923}  [Source:UniProtKB/TrEMBL;Acc:F6UZE5]
ENSCJAG00000002717	KNOWN	protein_coding	TMEM167B	chromosome:C_jacchus3.2.1:7:1:155834243:1	144947493	144956597	D	Protein kish {ECO:0000256|RuleBase:RU910717}  [Source:UniProtKB/TrEMBL;Acc:F6UZC6]
ENSCJAG00000012409	NOVEL	pseudogene	ENSCJAG00000012409	chromosome:C_jacchus3.2.1:17:1:74750902:1	67469232	67471055	R	<no descrition>
ENSCJAG00000021183	KNOWN_BY_PROJECTION	protein_coding	SH3TC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	46402568	46467368	R	SH3 domain and tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:29427]
ENSCJAG00000035344	NOVEL	protein_coding	ENSCJAG00000035344	chromosome:C_jacchus3.2.1:X:1:142054208:1	38514801	38534371	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018578}  [Source:UniProtKB/TrEMBL;Acc:F7CZF1]
ENSCJAG00000011672	NOVEL	protein_coding	ENSCJAG00000011672	chromosome:C_jacchus3.2.1:X:1:142054208:1	38515022	38525216	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020986}  [Source:UniProtKB/TrEMBL;Acc:F7GIV6]
ENSCJAG00000003755	NOVEL	pseudogene	ENSCJAG00000003755	chromosome:C_jacchus3.2.1:X:1:142054208:1	38694178	38694635	D	<no descrition>
ENSCJAG00000033234	NOVEL	pseudogene	ENSCJAG00000033234	chromosome:C_jacchus3.2.1:7:1:155834243:1	144952877	144953838	R	<no descrition>
ENSCJAG00000002720	KNOWN_BY_PROJECTION	protein_coding	C1orf194	chromosome:C_jacchus3.2.1:7:1:155834243:1	144966041	144974565	R	chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:HGNC:32331]
ENSCJAG00000003758	KNOWN	protein_coding	BCOR	chromosome:C_jacchus3.2.1:X:1:142054208:1	38890618	39020559	R	BCL-6 corepressor isoform a {ECO:0000313|EMBL:JAB21938.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043265}  [Source:UniProtKB/TrEMBL;Acc:F7I844]
ENSCJAG00000020635	KNOWN	protein_coding	ATP5C1	chromosome:C_jacchus3.2.1:7:1:155834243:1	6210494	6228968	D	ATP synthase subunit gamma {ECO:0000256|RuleBase:RU004001}  [Source:UniProtKB/TrEMBL;Acc:F7I4L8]
ENSCJAG00000020650	KNOWN_BY_PROJECTION	protein_coding	TAF3	chromosome:C_jacchus3.2.1:7:1:155834243:1	6393874	6442468	D	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa [Source:HGNC Symbol;Acc:HGNC:17303]
ENSCJAG00000019527	KNOWN	protein_coding	PDZD8	chromosome:C_jacchus3.2.1:12:1:121768101:1	105021998	105123944	R	PDZ domain-containing protein 8 {ECO:0000313|EMBL:JAB10623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036273}  [Source:UniProtKB/TrEMBL;Acc:F7E5Y8]
ENSCJAG00000020652	NOVEL	protein_coding	ENSCJAG00000020652	chromosome:C_jacchus3.2.1:7:1:155834243:1	6475050	6478108	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038392}  [Source:UniProtKB/TrEMBL;Acc:F7I4L0]
ENSCJAG00000020654	KNOWN_BY_PROJECTION	protein_coding	GATA3	chromosome:C_jacchus3.2.1:7:1:155834243:1	6480309	6490131	D	GATA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4172]
ENSCJAG00000019534	NOVEL	pseudogene	ENSCJAG00000019534	chromosome:C_jacchus3.2.1:12:1:121768101:1	105239081	105239829	D	<no descrition>
ENSCJAG00000020660	NOVEL	protein_coding	ENSCJAG00000020660	chromosome:C_jacchus3.2.1:7:1:155834243:1	8093618	8094037	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038407}  [Source:UniProtKB/TrEMBL;Acc:F7HXI4]
ENSCJAG00000019535	KNOWN	protein_coding	EMX2	chromosome:C_jacchus3.2.1:12:1:121768101:1	105280968	105288661	D	Homeobox protein EMX2 isoform 1 {ECO:0000313|EMBL:JAB19745.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036285}  [Source:UniProtKB/TrEMBL;Acc:F7E5H5]
ENSCJAG00000014129	KNOWN_BY_PROJECTION	protein_coding	GRK4	chromosome:C_jacchus3.2.1:3:1:190850796:1	187821878	187887253	R	G protein-coupled receptor kinase 4 [Source:HGNC Symbol;Acc:HGNC:4543]
ENSCJAG00000019541	NOVEL	protein_coding	ENSCJAG00000019541	chromosome:C_jacchus3.2.1:12:1:121768101:1	105408090	105410730	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045751}  [Source:UniProtKB/TrEMBL;Acc:F6SHD3]
ENSCJAG00000012414	KNOWN_BY_PROJECTION	protein_coding	MLH1	chromosome:C_jacchus3.2.1:17:1:74750902:1	67471331	67543798	D	mutL homolog 1 [Source:HGNC Symbol;Acc:HGNC:7127]
ENSCJAG00000017081	KNOWN	protein_coding	SAFB	chromosome:C_jacchus3.2.1:22:1:49145316:1	5347110	5391220	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031635}  [Source:UniProtKB/TrEMBL;Acc:F7IEV2]
ENSCJAG00000019543	KNOWN	protein_coding	RAB11FIP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	105758522	105800516	R	Rab11 family-interacting protein 2 {ECO:0000313|EMBL:JAB12545.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036328}  [Source:UniProtKB/TrEMBL;Acc:F7H3B2]
ENSCJAG00000002736	KNOWN_BY_PROJECTION	protein_coding	KIAA1324	chromosome:C_jacchus3.2.1:7:1:155834243:1	144974607	145069653	D	KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
ENSCJAG00000019560	NOVEL	protein_coding	ENSCJAG00000019560	chromosome:C_jacchus3.2.1:12:1:121768101:1	105800920	105974052	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036333}  [Source:UniProtKB/TrEMBL;Acc:F7GY99]
ENSCJAG00000019565	KNOWN	protein_coding	ENSCJAG00000019565	chromosome:C_jacchus3.2.1:12:1:121768101:1	106088032	106121950	R	Protein FAM204A {ECO:0000313|EMBL:JAB02216.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036346}  [Source:UniProtKB/TrEMBL;Acc:F7GXZ6]
ENSCJAG00000020663	KNOWN	protein_coding	CELF2	chromosome:C_jacchus3.2.1:7:1:155834243:1	9393183	9711352	D	CUGBP Elav-like family member 2 isoform 3 {ECO:0000313|EMBL:JAB22136.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038429}  [Source:UniProtKB/TrEMBL;Acc:F7HQB0]
ENSCJAG00000014174	KNOWN	protein_coding	NOP14	chromosome:C_jacchus3.2.1:3:1:190850796:1	187888240	187915219	D	Nucleolar protein 14 {ECO:0000313|EMBL:JAB14565.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026137}  [Source:UniProtKB/TrEMBL;Acc:F7IE64]
ENSCJAG00000020333	NOVEL	protein_coding	ENSCJAG00000020333	chromosome:C_jacchus3.2.1:1:1:210400635:1	185956832	185957572	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037791}  [Source:UniProtKB/TrEMBL;Acc:F7CRH2]
ENSCJAG00000021795	NOVEL	protein_coding	ENSCJAG00000021795	chromosome:C_jacchus3.2.1:1:1:210400635:1	186009587	186195335	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040500}  [Source:UniProtKB/TrEMBL;Acc:F7HVA9]
ENSCJAG00000009794	NOVEL	protein_coding	ENSCJAG00000009794	chromosome:C_jacchus3.2.1:1:1:210400635:1	186048383	186471398	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017967}  [Source:UniProtKB/TrEMBL;Acc:F7I7D9]
ENSCJAG00000006726	KNOWN	protein_coding	RABGGTA	chromosome:C_jacchus3.2.1:10:1:132174527:1	48304957	48311000	R	Geranylgeranyl transferase type-2 subunit alpha {ECO:0000313|EMBL:JAB09634.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012440}  [Source:UniProtKB/TrEMBL;Acc:F7FA20]
ENSCJAG00000011599	KNOWN_BY_PROJECTION	protein_coding	INCA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	97141044	97149070	R	inhibitor of CDK, cyclin A1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:32224]
ENSCJAG00000003800	KNOWN	protein_coding	ATP6AP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	39442611	39540843	D	Renin receptor {ECO:0000313|EMBL:JAB05760.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006987}  [Source:UniProtKB/TrEMBL;Acc:F7GV57]
ENSCJAG00000021152	KNOWN_BY_PROJECTION	protein_coding	ABLIM3	chromosome:C_jacchus3.2.1:2:1:204313951:1	46557618	46678850	D	actin binding LIM protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29132]
ENSCJAG00000020324	NOVEL	pseudogene	ENSCJAG00000020324	chromosome:C_jacchus3.2.1:1:1:210400635:1	186097977	186099581	R	<no descrition>
ENSCJAG00000020321	KNOWN_BY_PROJECTION	protein_coding	ZNF280A	chromosome:C_jacchus3.2.1:1:1:210400635:1	186124619	186136195	R	zinc finger protein 280A [Source:HGNC Symbol;Acc:HGNC:18597]
ENSCJAG00000006700	KNOWN	protein_coding	DHRS1	chromosome:C_jacchus3.2.1:10:1:132174527:1	48328667	48338110	R	Dehydrogenase/reductase SDR family member 1 {ECO:0000313|EMBL:JAB06877.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012413}  [Source:UniProtKB/TrEMBL;Acc:F7FPE6]
ENSCJAG00000020319	KNOWN_BY_PROJECTION	protein_coding	PRAME	chromosome:C_jacchus3.2.1:1:1:210400635:1	186147311	186169405	R	preferentially expressed antigen in melanoma [Source:HGNC Symbol;Acc:HGNC:9336]
ENSCJAG00000022156	NOVEL	protein_coding	ENSCJAG00000022156	chromosome:C_jacchus3.2.1:1:1:210400635:1	186226762	186227125	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040812}  [Source:UniProtKB/TrEMBL;Acc:F7IIQ8]
ENSCJAG00000011553	KNOWN_BY_PROJECTION	protein_coding	KIF1C	chromosome:C_jacchus3.2.1:5:1:159171411:1	97149416	97176491	D	kinesin family member 1C [Source:HGNC Symbol;Acc:HGNC:6317]
ENSCJAG00000009770	KNOWN	protein_coding	RTDR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	186611715	186693873	R	Rhabdoid tumor deletion region protein 1 {ECO:0000313|EMBL:JAB13275.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017917}  [Source:UniProtKB/TrEMBL;Acc:F7IEE2]
ENSCJAG00000019575	KNOWN_BY_PROJECTION	protein_coding	PRLHR	chromosome:C_jacchus3.2.1:12:1:121768101:1	106393256	106396328	R	prolactin releasing hormone receptor [Source:HGNC Symbol;Acc:HGNC:4464]
ENSCJAG00000020673	KNOWN	protein_coding	USP6NL	chromosome:C_jacchus3.2.1:7:1:155834243:1	9840336	9977275	R	USP6 N-terminal-like protein isoform 1 {ECO:0000313|EMBL:JAB08141.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038448}  [Source:UniProtKB/TrEMBL;Acc:F7IT73]
ENSCJAG00000008974	KNOWN_BY_PROJECTION	protein_coding	CCDC64	chromosome:C_jacchus3.2.1:9:1:124281992:1	110799346	110920869	D	coiled-coil domain containing 64 [Source:HGNC Symbol;Acc:HGNC:28095]
ENSCJAG00000011543	KNOWN_BY_PROJECTION	protein_coding	SLC52A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	97190462	97193128	R	solute carrier family 52 (riboflavin transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:30225]
ENSCJAG00000019578	KNOWN	protein_coding	CACUL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	106506135	106572385	R	CDK2-associated and cullin domain-containing protein 1 {ECO:0000313|EMBL:JAB05496.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036367}  [Source:UniProtKB/TrEMBL;Acc:F7GMU9]
ENSCJAG00000011539	KNOWN	protein_coding	ZFP3	chromosome:C_jacchus3.2.1:5:1:159171411:1	97225395	97243390	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021205}; Zinc finger protein 3 homolog {ECO:0000313|EMBL:JAB11474.1}  [Source:UniProtKB/TrEMBL;Acc:F6RNH2]
ENSCJAG00000009778	KNOWN	protein_coding	GNAZ	chromosome:C_jacchus3.2.1:1:1:210400635:1	186623084	186676859	D	Guanine nucleotide-binding protein G(Z) subunit alpha {ECO:0000313|EMBL:JAB02168.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043892}  [Source:UniProtKB/TrEMBL;Acc:F7I574]
ENSCJAG00000010541	KNOWN_BY_PROJECTION	protein_coding	MYO6	chromosome:C_jacchus3.2.1:4:1:171630274:1	74066602	74231901	D	myosin VI [Source:HGNC Symbol;Acc:HGNC:7605]
ENSCJAG00000011531	KNOWN_BY_PROJECTION	protein_coding	ZNF594	chromosome:C_jacchus3.2.1:5:1:159171411:1	97250855	97270036	R	zinc finger protein 594 [Source:HGNC Symbol;Acc:HGNC:29392]
ENSCJAG00000002784	KNOWN_BY_PROJECTION	protein_coding	SARS	chromosome:C_jacchus3.2.1:7:1:155834243:1	145079889	145105117	D	seryl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:10537]
ENSCJAG00000014217	KNOWN_BY_PROJECTION	protein_coding	MFSD10	chromosome:C_jacchus3.2.1:3:1:190850796:1	187920928	187923325	D	major facilitator superfamily domain containing 10 [Source:HGNC Symbol;Acc:HGNC:16894]
ENSCJAG00000020679	NOVEL	protein_coding	ENSCJAG00000020679	chromosome:C_jacchus3.2.1:7:1:155834243:1	9991689	9992706	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051608}  [Source:UniProtKB/TrEMBL;Acc:F7B0G4]
ENSCJAG00000011513	KNOWN_BY_PROJECTION	protein_coding	SCIMP	chromosome:C_jacchus3.2.1:5:1:159171411:1	97310119	97333198	R	SLP adaptor and CSK interacting membrane protein [Source:HGNC Symbol;Acc:HGNC:33504]
ENSCJAG00000020682	KNOWN_BY_PROJECTION	protein_coding	ECHDC3	chromosome:C_jacchus3.2.1:7:1:155834243:1	10124361	10142094	D	enoyl CoA hydratase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:23489]
ENSCJAG00000017076	KNOWN	protein_coding	C19ORF70	chromosome:C_jacchus3.2.1:22:1:49145316:1	5401809	5405158	R	Protein QIL1 {ECO:0000313|EMBL:JAB14979.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031387}  [Source:UniProtKB/TrEMBL;Acc:F7IPG8]
ENSCJAG00000016948	KNOWN_BY_PROJECTION	protein_coding	HSD11B1L	chromosome:C_jacchus3.2.1:22:1:49145316:1	5410893	5416227	D	hydroxysteroid (11-beta) dehydrogenase 1-like [Source:HGNC Symbol;Acc:HGNC:30419]
ENSCJAG00000009728	KNOWN_BY_PROJECTION	protein_coding	BCR	chromosome:C_jacchus3.2.1:1:1:210400635:1	186659454	186901806	D	breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
ENSCJAG00000014227	KNOWN	protein_coding	ADD1	chromosome:C_jacchus3.2.1:3:1:190850796:1	187924048	188025069	R	Alpha-adducin isoform d {ECO:0000313|EMBL:JAB18697.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026276}  [Source:UniProtKB/TrEMBL;Acc:F7IQW1]
ENSCJAG00000017072	KNOWN_BY_PROJECTION	protein_coding	RPL36	chromosome:C_jacchus3.2.1:22:1:49145316:1	5417810	5419966	D	ribosomal protein L36 [Source:HGNC Symbol;Acc:HGNC:13631]
ENSCJAG00000021140	KNOWN	protein_coding	AFAP1L1	chromosome:C_jacchus3.2.1:2:1:204313951:1	46717865	46763684	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039375}  [Source:UniProtKB/TrEMBL;Acc:F7H533]
ENSCJAG00000012550	KNOWN	protein_coding	LRRFIP2	chromosome:C_jacchus3.2.1:17:1:74750902:1	67529027	67654076	R	Leucine-rich repeat flightless-interacting protein 2 isoform 2 {ECO:0000313|EMBL:JAB09213.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051325}  [Source:UniProtKB/TrEMBL;Acc:F6Z1V4]
ENSCJAG00000020683	KNOWN_BY_PROJECTION	protein_coding	PROSER2	chromosome:C_jacchus3.2.1:7:1:155834243:1	10211290	10230377	D	proline and serine rich 2 [Source:HGNC Symbol;Acc:HGNC:23728]
ENSCJAG00000019588	NOVEL	pseudogene	ENSCJAG00000019588	chromosome:C_jacchus3.2.1:12:1:121768101:1	106673165	106674113	D	<no descrition>
ENSCJAG00000021139	KNOWN	protein_coding	GRPEL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	46767495	46773192	D	GrpE protein homolog {ECO:0000256|RuleBase:RU000640}  [Source:UniProtKB/TrEMBL;Acc:F7HAB6]
ENSCJAG00000019589	KNOWN_BY_PROJECTION	protein_coding	NANOS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	106822474	106825278	D	nanos homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:23044]
ENSCJAG00000021137	KNOWN	protein_coding	PCYOX1L	chromosome:C_jacchus3.2.1:2:1:204313951:1	46779964	46791928	D	Prenylcysteine oxidase-like {ECO:0000313|EMBL:JAB02331.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039347}  [Source:UniProtKB/TrEMBL;Acc:F7HFE2]
ENSCJAG00000008955	KNOWN	protein_coding	RAB35	chromosome:C_jacchus3.2.1:9:1:124281992:1	110923117	110943552	R	Ras-related protein Rab-35 isoform 1 {ECO:0000313|EMBL:JAB04323.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016398}  [Source:UniProtKB/TrEMBL;Acc:F6ZNF5]
ENSCJAG00000017041	KNOWN	protein_coding	LONP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	5420069	5459258	R	Lon protease homolog, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03120}  [Source:UniProtKB/TrEMBL;Acc:F7IRU6]
ENSCJAG00000019595	KNOWN_BY_PROJECTION	protein_coding	EIF3A	chromosome:C_jacchus3.2.1:12:1:121768101:1	106833594	106879314	R	eukaryotic translation initiation factor 3, subunit A [Source:HGNC Symbol;Acc:HGNC:3271]
ENSCJAG00000011449	KNOWN_BY_PROJECTION	protein_coding	RABEP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	97388212	97515999	D	rabaptin, RAB GTPase binding effector protein 1 [Source:HGNC Symbol;Acc:HGNC:17677]
ENSCJAG00000002840	KNOWN	protein_coding	CELSR2	chromosome:C_jacchus3.2.1:7:1:155834243:1	145118969	145146347	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005312}  [Source:UniProtKB/TrEMBL;Acc:F7ILW5]
ENSCJAG00000020685	KNOWN_BY_PROJECTION	protein_coding	UPF2	chromosome:C_jacchus3.2.1:7:1:155834243:1	10278056	10406343	R	UPF2 regulator of nonsense transcripts homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:17854]
ENSCJAG00000011507	NOVEL	protein_coding	ENSCJAG00000011507	chromosome:C_jacchus3.2.1:5:1:159171411:1	97454439	97457261	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052444}  [Source:UniProtKB/TrEMBL;Acc:F7I4T6]
ENSCJAG00000008897	KNOWN_BY_PROJECTION	protein_coding	GCN1L1	chromosome:C_jacchus3.2.1:9:1:124281992:1	110954320	111023118	R	GCN1 general control of amino-acid synthesis 1-like 1 (yeast) [Source:HGNC Symbol;Acc:HGNC:4199]
ENSCJAG00000011424	KNOWN	protein_coding	NUP88	chromosome:C_jacchus3.2.1:5:1:159171411:1	97518741	97553655	R	Nuclear pore complex protein Nup88 {ECO:0000313|EMBL:JAB07821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021044}  [Source:UniProtKB/TrEMBL;Acc:F6PLI1]
ENSCJAG00000021136	KNOWN_BY_PROJECTION	protein_coding	IL17B	chromosome:C_jacchus3.2.1:2:1:204313951:1	46797280	46802021	R	interleukin 17B [Source:HGNC Symbol;Acc:HGNC:5982]
ENSCJAG00000006675	KNOWN	protein_coding	NOP9	chromosome:C_jacchus3.2.1:10:1:132174527:1	48338269	48348407	D	Nucleolar protein 9 {ECO:0000313|EMBL:JAB09757.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012375}  [Source:UniProtKB/TrEMBL;Acc:F7H391]
ENSCJAG00000006658	KNOWN_BY_PROJECTION	protein_coding	CIDEB	chromosome:C_jacchus3.2.1:10:1:132174527:1	48344008	48351623	R	cell death-inducing DFFA-like effector b [Source:HGNC Symbol;Acc:HGNC:1977]
ENSCJAG00000012602	KNOWN_BY_PROJECTION	protein_coding	GOLGA4	chromosome:C_jacchus3.2.1:17:1:74750902:1	67687442	67807768	D	golgin A4 [Source:HGNC Symbol;Acc:HGNC:4427]
ENSCJAG00000009762	KNOWN_BY_PROJECTION	protein_coding	RAB36	chromosome:C_jacchus3.2.1:1:1:210400635:1	186695719	186712922	D	RAB36, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9775]
ENSCJAG00000035653	KNOWN_BY_PROJECTION	protein_coding	LTB4R2	chromosome:C_jacchus3.2.1:10:1:132174527:1	48350408	48352274	D	leukotriene B4 receptor 2 [Source:HGNC Symbol;Acc:HGNC:19260]
ENSCJAG00000023218	KNOWN_BY_PROJECTION	protein_coding	LTB4R	chromosome:C_jacchus3.2.1:10:1:132174527:1	48351726	48358386	D	leukotriene B4 receptor [Source:HGNC Symbol;Acc:HGNC:6713]
ENSCJAG00000021121	KNOWN	protein_coding	CSNK1A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	46918552	46978532	R	Casein kinase I isoform alpha isoform 1 {ECO:0000313|EMBL:JAB03821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039337}  [Source:UniProtKB/TrEMBL;Acc:F7HFK8]
ENSCJAG00000019618	KNOWN	protein_coding	FAM45A	chromosome:C_jacchus3.2.1:12:1:121768101:1	106901654	106933060	D	Protein FAM45A {ECO:0000313|EMBL:JAB18079.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036426}  [Source:UniProtKB/TrEMBL;Acc:F7EHN0]
ENSCJAG00000009691	KNOWN_BY_PROJECTION	protein_coding	SPECC1L	chromosome:C_jacchus3.2.1:1:1:210400635:1	186968304	187070767	D	sperm antigen with calponin homology and coiled-coil domains 1-like [Source:HGNC Symbol;Acc:HGNC:29022]
ENSCJAG00000012661	KNOWN_BY_PROJECTION	protein_coding	ITGA9	chromosome:C_jacchus3.2.1:17:1:74750902:1	67913966	68270107	D	integrin, alpha 9 [Source:HGNC Symbol;Acc:HGNC:6145]
ENSCJAG00000021116	KNOWN_BY_PROJECTION	protein_coding	ARHGEF37	chromosome:C_jacchus3.2.1:2:1:204313951:1	47017795	47081511	D	Rho guanine nucleotide exchange factor (GEF) 37 [Source:HGNC Symbol;Acc:HGNC:34430]
ENSCJAG00000009727	NOVEL	pseudogene	ENSCJAG00000009727	chromosome:C_jacchus3.2.1:1:1:210400635:1	187013851	187014602	D	<no descrition>
ENSCJAG00000009723	NOVEL	protein_coding	ENSCJAG00000009723	chromosome:C_jacchus3.2.1:1:1:210400635:1	187038364	187039356	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017801}  [Source:UniProtKB/TrEMBL;Acc:F7HVM6]
ENSCJAG00000006470	KNOWN_BY_PROJECTION	protein_coding	ADCY4	chromosome:C_jacchus3.2.1:10:1:132174527:1	48358852	48375361	R	adenylate cyclase 4 [Source:HGNC Symbol;Acc:HGNC:235]
ENSCJAG00000003854	KNOWN	protein_coding	CXORF38	chromosome:C_jacchus3.2.1:X:1:142054208:1	39489116	39503609	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007027}; Uncharacterized protein CXorf38 {ECO:0000313|EMBL:JAB03320.1}  [Source:UniProtKB/TrEMBL;Acc:F6PV06]
ENSCJAG00000009680	KNOWN_BY_PROJECTION	protein_coding	ADORA2A	chromosome:C_jacchus3.2.1:1:1:210400635:1	187082147	187096856	D	adenosine A2a receptor [Source:HGNC Symbol;Acc:HGNC:263]
ENSCJAG00000002944	KNOWN_BY_PROJECTION	protein_coding	PSRC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	145150125	145153727	R	proline/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24472]
ENSCJAG00000009623	KNOWN_BY_PROJECTION	protein_coding	CAMK1D	chromosome:C_jacchus3.2.1:7:1:155834243:1	10726688	10786596	D	calcium/calmodulin-dependent protein kinase ID [Source:HGNC Symbol;Acc:HGNC:19341]
ENSCJAG00000002949	KNOWN_BY_PROJECTION	protein_coding	MYBPHL	chromosome:C_jacchus3.2.1:7:1:155834243:1	145163405	145180339	R	myosin binding protein H-like [Source:HGNC Symbol;Acc:HGNC:30434]
ENSCJAG00000009612	KNOWN_BY_PROJECTION	protein_coding	CCDC3	chromosome:C_jacchus3.2.1:7:1:155834243:1	10852408	10951461	R	coiled-coil domain containing 3 [Source:HGNC Symbol;Acc:HGNC:23813]
ENSCJAG00000009653	KNOWN_BY_PROJECTION	protein_coding	UPB1	chromosome:C_jacchus3.2.1:1:1:210400635:1	187151293	187188197	D	ureidopropionase, beta [Source:HGNC Symbol;Acc:HGNC:16297]
ENSCJAG00000011370	KNOWN	protein_coding	RPAIN	chromosome:C_jacchus3.2.1:5:1:159171411:1	97553620	97567065	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020978}  [Source:UniProtKB/TrEMBL;Acc:F7GQD2]
ENSCJAG00000009575	KNOWN_BY_PROJECTION	protein_coding	OPTN	chromosome:C_jacchus3.2.1:7:1:155834243:1	11021624	11054125	D	optineurin [Source:HGNC Symbol;Acc:HGNC:17142]
ENSCJAG00000003871	KNOWN_BY_PROJECTION	protein_coding	MED14	chromosome:C_jacchus3.2.1:X:1:142054208:1	39504392	39593255	R	mediator complex subunit 14 [Source:HGNC Symbol;Acc:HGNC:2370]
ENSCJAG00000016893	KNOWN_BY_PROJECTION	protein_coding	CATSPERD	chromosome:C_jacchus3.2.1:22:1:49145316:1	5459601	5522603	D	catsper channel auxiliary subunit delta [Source:HGNC Symbol;Acc:HGNC:28598]
ENSCJAG00000021113	KNOWN	protein_coding	PPARGC1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	47181002	47297150	D	Peroxisome proliferator-activated receptor gamma coactivator 1-beta isoform 1 {ECO:0000313|EMBL:JAB10527.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039289}  [Source:UniProtKB/TrEMBL;Acc:F7F1B1]
ENSCJAG00000017034	KNOWN_BY_PROJECTION	protein_coding	PRR22	chromosome:C_jacchus3.2.1:22:1:49145316:1	5525610	5527229	R	proline rich 22 [Source:HGNC Symbol;Acc:HGNC:28354]
ENSCJAG00000016997	KNOWN_BY_PROJECTION	protein_coding	DUS3L	chromosome:C_jacchus3.2.1:22:1:49145316:1	5527677	5539597	R	dihydrouridine synthase 3-like (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26920]
ENSCJAG00000009635	KNOWN	protein_coding	GUCD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	187205717	187218140	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017670}  [Source:UniProtKB/TrEMBL;Acc:F7HL30]
ENSCJAG00000009630	KNOWN_BY_PROJECTION	protein_coding	SNRPD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	187218943	187238549	D	small nuclear ribonucleoprotein D3 polypeptide 18kDa [Source:HGNC Symbol;Acc:HGNC:11160]
ENSCJAG00000016988	KNOWN	protein_coding	NRTN	chromosome:C_jacchus3.2.1:22:1:49145316:1	5575503	5579946	D	Neurturin preproprotein {ECO:0000313|EMBL:JAB03242.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031248}  [Source:UniProtKB/TrEMBL;Acc:F7ICQ7]
ENSCJAG00000010664	KNOWN_BY_PROJECTION	protein_coding	IMPG1	chromosome:C_jacchus3.2.1:4:1:171630274:1	74233690	74410485	R	interphotoreceptor matrix proteoglycan 1 [Source:HGNC Symbol;Acc:HGNC:6055]
ENSCJAG00000012699	KNOWN_BY_PROJECTION	protein_coding	CTDSPL	chromosome:C_jacchus3.2.1:17:1:74750902:1	68307680	68432768	D	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like [Source:HGNC Symbol;Acc:HGNC:16890]
ENSCJAG00000016923	NOVEL	protein_coding	ENSCJAG00000016923	chromosome:C_jacchus3.2.1:22:1:49145316:1	5609993	5619334	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031160}  [Source:UniProtKB/TrEMBL;Acc:F7IM96]
ENSCJAG00000033629	KNOWN	protein_coding	VMAC	chromosome:C_jacchus3.2.1:22:1:49145316:1	5620455	5626562	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031125}; Vimentin-type intermediate filament-associated coiled-coil protein {ECO:0000313|EMBL:JAB02661.1}  [Source:UniProtKB/TrEMBL;Acc:F7IRW7]
ENSCJAG00000009592	NOVEL	protein_coding	ENSCJAG00000009592	chromosome:C_jacchus3.2.1:1:1:210400635:1	187251039	187297465	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046792}  [Source:UniProtKB/TrEMBL;Acc:F7I1A0]
ENSCJAG00000012715	KNOWN_BY_PROJECTION	protein_coding	VILL	chromosome:C_jacchus3.2.1:17:1:74750902:1	68444509	68460592	D	villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
ENSCJAG00000016865	KNOWN	protein_coding	CAPS	chromosome:C_jacchus3.2.1:22:1:49145316:1	5630284	5632727	D	Calcyphosin isoform a {ECO:0000313|EMBL:JAB03294.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048112}  [Source:UniProtKB/TrEMBL;Acc:F7HJE4]
ENSCJAG00000002962	KNOWN_BY_PROJECTION	protein_coding	SORT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	145187852	145358644	R	sortilin 1 [Source:HGNC Symbol;Acc:HGNC:11186]
ENSCJAG00000022400	NOVEL	protein_coding	ENSCJAG00000022400	chromosome:C_jacchus3.2.1:4:1:171630274:1	74564795	74566576	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045281}  [Source:UniProtKB/TrEMBL;Acc:F6Q616]
ENSCJAG00000034767	KNOWN_BY_PROJECTION	protein_coding	MEI4	chromosome:C_jacchus3.2.1:4:1:171630274:1	76048003	76087129	D	meiosis-specific 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:43638]
ENSCJAG00000010684	KNOWN	protein_coding	IRAK1BP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	77291044	77315364	D	Interleukin-1 receptor-associated kinase 1-binding protein 1 {ECO:0000313|EMBL:JAB02891.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019687}  [Source:UniProtKB/TrEMBL;Acc:F6SQC5]
ENSCJAG00000012734	KNOWN_BY_PROJECTION	protein_coding	PLCD1	chromosome:C_jacchus3.2.1:17:1:74750902:1	68461118	68485426	R	phospholipase C, delta 1 [Source:HGNC Symbol;Acc:HGNC:9060]
ENSCJAG00000011352	KNOWN	protein_coding	C1QBP	chromosome:C_jacchus3.2.1:5:1:159171411:1	97566755	97573285	R	Complement component 1 Q subcomponent-binding protein, mitochondrial {ECO:0000313|EMBL:JAB07756.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020904}  [Source:UniProtKB/TrEMBL;Acc:F7HBC3]
ENSCJAG00000003004	KNOWN	protein_coding	PSMA5	chromosome:C_jacchus3.2.1:7:1:155834243:1	145281344	145312152	R	Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}  [Source:UniProtKB/TrEMBL;Acc:F7HY95]
ENSCJAG00000009531	KNOWN_BY_PROJECTION	protein_coding	MCM10	chromosome:C_jacchus3.2.1:7:1:155834243:1	11075447	11112637	D	minichromosome maintenance complex component 10 [Source:HGNC Symbol;Acc:HGNC:18043]
ENSCJAG00000011321	KNOWN	protein_coding	DHX33	chromosome:C_jacchus3.2.1:5:1:159171411:1	97575878	97607400	R	Putative ATP-dependent RNA helicase DHX33 isoform 1 {ECO:0000313|EMBL:JAB04998.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020865}  [Source:UniProtKB/TrEMBL;Acc:F7DYL9]
ENSCJAG00000008677	KNOWN_BY_PROJECTION	protein_coding	RPLP0	chromosome:C_jacchus3.2.1:9:1:124281992:1	111025357	111029935	R	ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:HGNC:10371]
ENSCJAG00000012749	NOVEL	pseudogene	ENSCJAG00000012749	chromosome:C_jacchus3.2.1:17:1:74750902:1	68473778	68474829	D	<no descrition>
ENSCJAG00000031808	NOVEL	pseudogene	ENSCJAG00000031808	chromosome:C_jacchus3.2.1:17:1:74750902:1	68497374	68498250	D	<no descrition>
ENSCJAG00000021102	KNOWN_BY_PROJECTION	protein_coding	PDE6A	chromosome:C_jacchus3.2.1:2:1:204313951:1	47310352	47399147	R	phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
ENSCJAG00000009517	KNOWN_BY_PROJECTION	protein_coding	UCMA	chromosome:C_jacchus3.2.1:7:1:155834243:1	11118860	11129737	R	upper zone of growth plate and cartilage matrix associated [Source:HGNC Symbol;Acc:HGNC:25205]
ENSCJAG00000009507	KNOWN_BY_PROJECTION	protein_coding	PHYH	chromosome:C_jacchus3.2.1:7:1:155834243:1	11155602	11177812	R	phytanoyl-CoA 2-hydroxylase [Source:HGNC Symbol;Acc:HGNC:8940]
ENSCJAG00000016791	KNOWN	protein_coding	RANBP3	chromosome:C_jacchus3.2.1:22:1:49145316:1	5632667	5696338	R	Ran-binding protein 3 isoform RANBP3-b {ECO:0000313|EMBL:JAB08835.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031018}  [Source:UniProtKB/TrEMBL;Acc:F7I154]
ENSCJAG00000010226	KNOWN_BY_PROJECTION	protein_coding	DLEC1	chromosome:C_jacchus3.2.1:17:1:74750902:1	68508398	68578740	D	deleted in lung and esophageal cancer 1 [Source:HGNC Symbol;Acc:HGNC:2899]
ENSCJAG00000021099	KNOWN	protein_coding	SLC26A2	chromosome:C_jacchus3.2.1:2:1:204313951:1	47415788	47434683	D	Sulfate transporter {ECO:0000313|EMBL:JAB50996.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048159}  [Source:UniProtKB/TrEMBL;Acc:F7H3N7]
ENSCJAG00000009494	KNOWN	protein_coding	SEPHS1	chromosome:C_jacchus3.2.1:7:1:155834243:1	11186574	11215352	R	Selenide, water dikinase 1 isoform 1 {ECO:0000313|EMBL:JAB05053.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017409}  [Source:UniProtKB/TrEMBL;Acc:F7I2Y6]
ENSCJAG00000021088	KNOWN_BY_PROJECTION	protein_coding	HMGXB3	chromosome:C_jacchus3.2.1:2:1:204313951:1	47452381	47508832	D	HMG box domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28982]
ENSCJAG00000010212	NOVEL	protein_coding	ENSCJAG00000010212	chromosome:C_jacchus3.2.1:17:1:74750902:1	68579042	68592232	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018818}  [Source:UniProtKB/TrEMBL;Acc:F7DG24]
ENSCJAG00000009474	KNOWN_BY_PROJECTION	protein_coding	BEND7	chromosome:C_jacchus3.2.1:7:1:155834243:1	11279101	11376293	R	BEN domain containing 7 [Source:HGNC Symbol;Acc:HGNC:23514]
ENSCJAG00000009469	NOVEL	pseudogene	ENSCJAG00000009469	chromosome:C_jacchus3.2.1:7:1:155834243:1	11413786	11414492	R	<no descrition>
ENSCJAG00000003020	KNOWN_BY_PROJECTION	protein_coding	SYPL2	chromosome:C_jacchus3.2.1:7:1:155834243:1	145358414	145376839	D	synaptophysin-like 2 [Source:HGNC Symbol;Acc:HGNC:27638]
ENSCJAG00000009432	KNOWN	protein_coding	PRPF18	chromosome:C_jacchus3.2.1:7:1:155834243:1	11416827	11455741	D	Pre-mRNA-splicing factor 18 {ECO:0000313|EMBL:JAB10773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017324}  [Source:UniProtKB/TrEMBL;Acc:F7IJI3]
ENSCJAG00000011304	KNOWN	protein_coding	DERL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	97612513	97625653	R	Derlin-2 {ECO:0000313|EMBL:JAB10027.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020826}  [Source:UniProtKB/TrEMBL;Acc:F7F3Y4]
ENSCJAG00000034798	KNOWN	protein_coding	SFXN4	chromosome:C_jacchus3.2.1:12:1:121768101:1	106937229	106959665	R	Sideroflexin-4 {ECO:0000313|EMBL:JAB05528.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050141}  [Source:UniProtKB/TrEMBL;Acc:F7H4D5]
ENSCJAG00000009622	KNOWN_BY_PROJECTION	protein_coding	LRRC75B	chromosome:C_jacchus3.2.1:1:1:210400635:1	187252868	187263742	R	leucine rich repeat containing 75B [Source:HGNC Symbol;Acc:HGNC:33155]
ENSCJAG00000021077	KNOWN_BY_PROJECTION	protein_coding	CSF1R	chromosome:C_jacchus3.2.1:2:1:204313951:1	47509785	47545527	R	colony stimulating factor 1 receptor [Source:HGNC Symbol;Acc:HGNC:2433]
ENSCJAG00000010193	KNOWN_BY_PROJECTION	protein_coding	MYD88	chromosome:C_jacchus3.2.1:17:1:74750902:1	68593407	68598088	D	myeloid differentiation primary response 88 [Source:HGNC Symbol;Acc:HGNC:7562]
ENSCJAG00000014306	KNOWN_BY_PROJECTION	protein_coding	SH3BP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	188033635	188076686	R	SH3-domain binding protein 2 [Source:HGNC Symbol;Acc:HGNC:10825]
ENSCJAG00000003025	KNOWN_BY_PROJECTION	protein_coding	ATXN7L2	chromosome:C_jacchus3.2.1:7:1:155834243:1	145378421	145387387	D	ataxin 7-like 2 [Source:HGNC Symbol;Acc:HGNC:28713]
ENSCJAG00000003037	KNOWN	protein_coding	CYB561D1	chromosome:C_jacchus3.2.1:7:1:155834243:1	145388756	145391158	D	Cytochrome b561 domain-containing protein 1 isoform 2 {ECO:0000313|EMBL:JAB16834.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005524}  [Source:UniProtKB/TrEMBL;Acc:F7ILT1]
ENSCJAG00000032373	NOVEL	protein_coding	ENSCJAG00000032373	chromosome:C_jacchus3.2.1:5:1:159171411:1	97642235	97644857	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045149}  [Source:UniProtKB/TrEMBL;Acc:F6S0K4]
ENSCJAG00000003048	KNOWN	protein_coding	AMIGO1	chromosome:C_jacchus3.2.1:7:1:155834243:1	145400725	145403625	R	Amphoterin-induced protein 1 {ECO:0000313|EMBL:JAB20256.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005529}  [Source:UniProtKB/TrEMBL;Acc:F7ILS6]
ENSCJAG00000009566	KNOWN	protein_coding	GGT5	chromosome:C_jacchus3.2.1:1:1:210400635:1	187300706	187328585	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017555}  [Source:UniProtKB/TrEMBL;Acc:F7IEP5]
ENSCJAG00000003051	KNOWN_BY_PROJECTION	protein_coding	GPR61	chromosome:C_jacchus3.2.1:7:1:155834243:1	145432786	145439375	D	G protein-coupled receptor 61 [Source:HGNC Symbol;Acc:HGNC:13300]
ENSCJAG00000011265	KNOWN_BY_PROJECTION	protein_coding	NLRP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	97662609	97738535	R	NLR family, pyrin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14374]
ENSCJAG00000003054	KNOWN	protein_coding	GNAI3	chromosome:C_jacchus3.2.1:7:1:155834243:1	145442200	145493957	D	Guanine nucleotide-binding protein G(K) subunit alpha {ECO:0000313|EMBL:JAB08861.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005564}  [Source:UniProtKB/TrEMBL;Acc:F7IH31]
ENSCJAG00000019636	KNOWN	protein_coding	PRDX3	chromosome:C_jacchus3.2.1:12:1:121768101:1	106961983	106971922	R	Thioredoxin-dependent peroxide reductase, mitochondrial isoform a {ECO:0000313|EMBL:JAB05262.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036469}  [Source:UniProtKB/TrEMBL;Acc:F7D6R2]
ENSCJAG00000011257	NOVEL	protein_coding	ENSCJAG00000011257	chromosome:C_jacchus3.2.1:5:1:159171411:1	97878555	97879698	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052057}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ2]
ENSCJAG00000011248	NOVEL	protein_coding	ENSCJAG00000011248	chromosome:C_jacchus3.2.1:5:1:159171411:1	97972765	98145215	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020718}  [Source:UniProtKB/TrEMBL;Acc:F7H6D3]
ENSCJAG00000010691	KNOWN	protein_coding	PHIP	chromosome:C_jacchus3.2.1:4:1:171630274:1	77351776	77510648	R	PH-interacting protein {ECO:0000313|EMBL:JAB32335.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048364}  [Source:UniProtKB/TrEMBL;Acc:F7GE37]
ENSCJAG00000021070	KNOWN_BY_PROJECTION	protein_coding	PDGFRB	chromosome:C_jacchus3.2.1:2:1:204313951:1	47573922	47617593	R	platelet-derived growth factor receptor, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:8804]
ENSCJAG00000014338	KNOWN_BY_PROJECTION	protein_coding	TNIP2	chromosome:C_jacchus3.2.1:3:1:190850796:1	188126549	188142424	D	TNFAIP3 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:19118]
ENSCJAG00000010173	KNOWN	protein_coding	OXSR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	68621835	68723210	D	Serine/threonine-protein kinase OSR1 {ECO:0000313|EMBL:JAB04995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018755}  [Source:UniProtKB/TrEMBL;Acc:F7EBQ6]
ENSCJAG00000009404	KNOWN	protein_coding	FRMD4A	chromosome:C_jacchus3.2.1:7:1:155834243:1	11483164	11856548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017244}  [Source:UniProtKB/TrEMBL;Acc:F7HW65]
ENSCJAG00000014343	KNOWN_BY_PROJECTION	protein_coding	FAM193A	chromosome:C_jacchus3.2.1:3:1:190850796:1	188165866	188303707	R	family with sequence similarity 193, member A [Source:HGNC Symbol;Acc:HGNC:16822]
ENSCJAG00000009401	KNOWN_BY_PROJECTION	protein_coding	FAM107B	chromosome:C_jacchus3.2.1:7:1:155834243:1	12381890	12642156	R	family with sequence similarity 107, member B [Source:HGNC Symbol;Acc:HGNC:23726]
ENSCJAG00000035572	NOVEL	protein_coding	ENSCJAG00000035572	chromosome:C_jacchus3.2.1:7:1:155834243:1	12658409	12671926	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052268}  [Source:UniProtKB/TrEMBL;Acc:F7IGV8]
ENSCJAG00000003071	KNOWN_BY_PROJECTION	protein_coding	GNAT2	chromosome:C_jacchus3.2.1:7:1:155834243:1	145502437	145511831	R	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:4394]
ENSCJAG00000024652	NOVEL	protein_coding	ENSCJAG00000024652	chromosome:C_jacchus3.2.1:7:1:155834243:1	12675154	12677746	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051700}  [Source:UniProtKB/TrEMBL;Acc:F6W0E7]
ENSCJAG00000011240	KNOWN	protein_coding	WSCD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	98259304	98313974	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047311}; WSC domain-containing protein 1 {ECO:0000313|EMBL:JAB17223.1}  [Source:UniProtKB/TrEMBL;Acc:F7I403]
ENSCJAG00000009397	KNOWN_BY_PROJECTION	protein_coding	CDNF	chromosome:C_jacchus3.2.1:7:1:155834243:1	12680040	12698994	R	cerebral dopamine neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:24913]
ENSCJAG00000011239	NOVEL	protein_coding	ENSCJAG00000011239	chromosome:C_jacchus3.2.1:5:1:159171411:1	98480858	98490097	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010352}  [Source:UniProtKB/TrEMBL;Acc:F6ZS73]
ENSCJAG00000009318	KNOWN	protein_coding	HSPA14	chromosome:C_jacchus3.2.1:7:1:155834243:1	12699360	12730749	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017175}  [Source:UniProtKB/TrEMBL;Acc:F7IA97]
ENSCJAG00000019648	KNOWN	protein_coding	GRK5	chromosome:C_jacchus3.2.1:12:1:121768101:1	106998812	107244918	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036500}  [Source:UniProtKB/TrEMBL;Acc:F7GXM6]
ENSCJAG00000011209	KNOWN_BY_PROJECTION	protein_coding	AIPL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	98638296	98649106	R	aryl hydrocarbon receptor interacting protein-like 1 [Source:HGNC Symbol;Acc:HGNC:359]
ENSCJAG00000021069	KNOWN_BY_PROJECTION	protein_coding	CDX1	chromosome:C_jacchus3.2.1:2:1:204313951:1	47628861	47647535	D	caudal type homeobox 1 [Source:HGNC Symbol;Acc:HGNC:1805]
ENSCJAG00000006467	KNOWN_BY_PROJECTION	protein_coding	RIPK3	chromosome:C_jacchus3.2.1:10:1:132174527:1	48378467	48380625	R	receptor-interacting serine-threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:10021]
ENSCJAG00000011205	NOVEL	protein_coding	ENSCJAG00000011205	chromosome:C_jacchus3.2.1:5:1:159171411:1	98659629	98664757	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020641}  [Source:UniProtKB/TrEMBL;Acc:F7EDA1]
ENSCJAG00000010167	KNOWN_BY_PROJECTION	protein_coding	SLC22A13	chromosome:C_jacchus3.2.1:17:1:74750902:1	68730986	68742101	D	solute carrier family 22 (organic anion/urate transporter), member 13 [Source:HGNC Symbol;Acc:HGNC:8494]
ENSCJAG00000021053	KNOWN	protein_coding	SLC6A7	chromosome:C_jacchus3.2.1:2:1:204313951:1	47653994	47675102	D	Transporter {ECO:0000256|RuleBase:RU003732}  [Source:UniProtKB/TrEMBL;Acc:F7GHJ1]
ENSCJAG00000014371	KNOWN	protein_coding	RNF4	chromosome:C_jacchus3.2.1:3:1:190850796:1	188386172	188422978	R	E3 ubiquitin-protein ligase RNF4 isoform 1 {ECO:0000313|EMBL:JAB07212.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026449}  [Source:UniProtKB/TrEMBL;Acc:F7HV40]
ENSCJAG00000031332	NOVEL	protein_coding	ENSCJAG00000031332	chromosome:C_jacchus3.2.1:1:1:210400635:1	187374480	187398992	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017419}  [Source:UniProtKB/TrEMBL;Acc:F7I0P6]
ENSCJAG00000011178	KNOWN_BY_PROJECTION	protein_coding	PITPNM3	chromosome:C_jacchus3.2.1:5:1:159171411:1	98673118	98758155	R	PITPNM family member 3 [Source:HGNC Symbol;Acc:HGNC:21043]
ENSCJAG00000014386	NOVEL	pseudogene	ENSCJAG00000014386	chromosome:C_jacchus3.2.1:3:1:190850796:1	188463221	188463803	R	<no descrition>
ENSCJAG00000009500	NOVEL	protein_coding	ENSCJAG00000009500	chromosome:C_jacchus3.2.1:1:1:210400635:1	187420154	187519452	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017509}  [Source:UniProtKB/TrEMBL;Acc:F7ILR9]
ENSCJAG00000014389	KNOWN_BY_PROJECTION	protein_coding	ZFYVE28	chromosome:C_jacchus3.2.1:3:1:190850796:1	188475165	188632176	D	zinc finger, FYVE domain containing 28 [Source:HGNC Symbol;Acc:HGNC:29334]
ENSCJAG00000003092	KNOWN_BY_PROJECTION	protein_coding	AMPD2	chromosome:C_jacchus3.2.1:7:1:155834243:1	145520690	145535325	D	adenosine monophosphate deaminase 2 [Source:HGNC Symbol;Acc:HGNC:469]
ENSCJAG00000010144	KNOWN_BY_PROJECTION	protein_coding	SLC22A14	chromosome:C_jacchus3.2.1:17:1:74750902:1	68777151	68792607	D	solute carrier family 22, member 14 [Source:HGNC Symbol;Acc:HGNC:8495]
ENSCJAG00000014432	KNOWN_BY_PROJECTION	protein_coding	MXD4	chromosome:C_jacchus3.2.1:3:1:190850796:1	188644779	188656530	D	MAX dimerization protein 4 [Source:HGNC Symbol;Acc:HGNC:13906]
ENSCJAG00000019675	KNOWN	protein_coding	RGS10	chromosome:C_jacchus3.2.1:12:1:121768101:1	107283398	107326754	R	Regulator of G-protein signaling 10 isoform a {ECO:0000313|EMBL:JAB02179.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036538}  [Source:UniProtKB/TrEMBL;Acc:F7GD38]
ENSCJAG00000009389	NOVEL	protein_coding	ENSCJAG00000009389	chromosome:C_jacchus3.2.1:7:1:155834243:1	12703850	12705019	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017187}  [Source:UniProtKB/TrEMBL;Acc:F7I7Y4]
ENSCJAG00000036903	KNOWN	protein_coding	HAUS3	chromosome:C_jacchus3.2.1:3:1:190850796:1	188665432	188676019	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026565}  [Source:UniProtKB/TrEMBL;Acc:F7IBK9]
ENSCJAG00000009302	KNOWN_BY_PROJECTION	protein_coding	SUV39H2	chromosome:C_jacchus3.2.1:7:1:155834243:1	12737035	12763826	D	suppressor of variegation 3-9 homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17287]
ENSCJAG00000011156	KNOWN	protein_coding	KIAA0753	chromosome:C_jacchus3.2.1:5:1:159171411:1	98801443	98871927	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045071}  [Source:UniProtKB/TrEMBL;Acc:F6T8K6]
ENSCJAG00000037019	NOVEL	protein_coding	ENSCJAG00000037019	chromosome:C_jacchus3.2.1:1:1:210400635:1	187421677	187434148	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052445}  [Source:UniProtKB/TrEMBL;Acc:F7I4T3]
ENSCJAG00000014447	KNOWN_BY_PROJECTION	protein_coding	POLN	chromosome:C_jacchus3.2.1:3:1:190850796:1	188665473	188833685	D	polymerase (DNA directed) nu [Source:HGNC Symbol;Acc:HGNC:18870]
ENSCJAG00000003123	KNOWN	protein_coding	GSTM5	chromosome:C_jacchus3.2.1:7:1:155834243:1	145559074	145589409	D	Glutathione S-transferase Mu 5 {ECO:0000313|EMBL:JAB31382.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005740}  [Source:UniProtKB/TrEMBL;Acc:F7IC75]
ENSCJAG00000006414	KNOWN_BY_PROJECTION	protein_coding	NFATC4	chromosome:C_jacchus3.2.1:10:1:132174527:1	48404325	48417258	D	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 [Source:HGNC Symbol;Acc:HGNC:7778]
ENSCJAG00000034006	KNOWN_BY_PROJECTION	protein_coding	ZNF124	chromosome:C_jacchus3.2.1:12:1:121768101:1	107335714	107337909	D	zinc finger protein 124 [Source:HGNC Symbol;Acc:HGNC:12907]
ENSCJAG00000009261	KNOWN_BY_PROJECTION	protein_coding	DCLRE1C	chromosome:C_jacchus3.2.1:7:1:155834243:1	12769189	12807527	R	DNA cross-link repair 1C [Source:HGNC Symbol;Acc:HGNC:17642]
ENSCJAG00000010114	KNOWN	protein_coding	XYLB	chromosome:C_jacchus3.2.1:17:1:74750902:1	68818102	68872503	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043124}; Xylulose kinase {ECO:0000313|EMBL:JAB03940.1}  [Source:UniProtKB/TrEMBL;Acc:F7IPI9]
ENSCJAG00000009467	NOVEL	protein_coding	ENSCJAG00000009467	chromosome:C_jacchus3.2.1:1:1:210400635:1	187551821	187559573	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017357}  [Source:UniProtKB/TrEMBL;Acc:F7ICF6]
ENSCJAG00000019682	KNOWN	protein_coding	TIAL1	chromosome:C_jacchus3.2.1:12:1:121768101:1	107357681	107380954	R	Nucleolysin TIAR isoform 2 {ECO:0000313|EMBL:JAB03245.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036597}  [Source:UniProtKB/TrEMBL;Acc:F7EW50]
ENSCJAG00000021031	KNOWN_BY_PROJECTION	protein_coding	CAMK2A	chromosome:C_jacchus3.2.1:2:1:204313951:1	47687460	47757819	R	calcium/calmodulin-dependent protein kinase II alpha [Source:HGNC Symbol;Acc:HGNC:1460]
ENSCJAG00000009492	KNOWN	protein_coding	GSTT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	187565834	187574674	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043675}  [Source:UniProtKB/TrEMBL;Acc:F7I5D3]
ENSCJAG00000009483	KNOWN	protein_coding	DDTL	chromosome:C_jacchus3.2.1:1:1:210400635:1	187575797	187586038	R	D-dopachrome decarboxylase {ECO:0000313|EMBL:JAB08862.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017375}  [Source:UniProtKB/TrEMBL;Acc:F7IA32]
ENSCJAG00000011150	KNOWN	protein_coding	TXNDC17	chromosome:C_jacchus3.2.1:5:1:159171411:1	98872071	98874392	D	Thioredoxin domain-containing protein 17 {ECO:0000313|EMBL:JAB19914.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020554}  [Source:UniProtKB/TrEMBL;Acc:F7GR41]
ENSCJAG00000021029	KNOWN	protein_coding	ARSI	chromosome:C_jacchus3.2.1:2:1:204313951:1	47764677	47771238	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039136}  [Source:UniProtKB/TrEMBL;Acc:F7HAI2]
ENSCJAG00000017237	KNOWN	protein_coding	MED31	chromosome:C_jacchus3.2.1:5:1:159171411:1	98875352	98881478	R	Mediator of RNA polymerase II transcription subunit 31 {ECO:0000313|EMBL:JAB10846.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031707}  [Source:UniProtKB/TrEMBL;Acc:F7I0Q3]
ENSCJAG00000010858	NOVEL	protein_coding	ENSCJAG00000010858	chromosome:C_jacchus3.2.1:5:1:159171411:1	99094126	99123167	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020018}  [Source:UniProtKB/TrEMBL;Acc:F7E205]
ENSCJAG00000032557	NOVEL	protein_coding	ENSCJAG00000032557	chromosome:C_jacchus3.2.1:1:1:210400635:1	187593708	187628807	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042364}  [Source:UniProtKB/TrEMBL;Acc:F6V6B2]
ENSCJAG00000016750	KNOWN_BY_PROJECTION	protein_coding	RFX2	chromosome:C_jacchus3.2.1:22:1:49145316:1	5715776	5779096	R	regulatory factor X, 2 (influences HLA class II expression) [Source:HGNC Symbol;Acc:HGNC:9983]
ENSCJAG00000020993	KNOWN_BY_PROJECTION	protein_coding	TCOF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	47830907	47872421	D	Treacher Collins-Franceschetti syndrome 1 [Source:HGNC Symbol;Acc:HGNC:11654]
ENSCJAG00000009257	KNOWN_BY_PROJECTION	protein_coding	MEIG1	chromosome:C_jacchus3.2.1:7:1:155834243:1	12813246	12824500	D	meiosis/spermiogenesis associated 1 [Source:HGNC Symbol;Acc:HGNC:23429]
ENSCJAG00000008639	KNOWN	protein_coding	PXN	chromosome:C_jacchus3.2.1:9:1:124281992:1	111034214	111093632	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015927}  [Source:UniProtKB/TrEMBL;Acc:F7E7M8]
ENSCJAG00000009252	KNOWN_BY_PROJECTION	protein_coding	OLAH	chromosome:C_jacchus3.2.1:7:1:155834243:1	12847619	12869488	D	oleoyl-ACP hydrolase [Source:HGNC Symbol;Acc:HGNC:25625]
ENSCJAG00000009249	KNOWN_BY_PROJECTION	protein_coding	ACBD7	chromosome:C_jacchus3.2.1:7:1:155834243:1	12874760	12875390	R	acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:HGNC:17715]
ENSCJAG00000022128	KNOWN_BY_PROJECTION	protein_coding	RPP38	chromosome:C_jacchus3.2.1:7:1:155834243:1	12892723	12897020	D	ribonuclease P/MRP 38kDa subunit [Source:HGNC Symbol;Acc:HGNC:30329]
ENSCJAG00000003161	KNOWN_BY_PROJECTION	protein_coding	GSTM2	chromosome:C_jacchus3.2.1:7:1:155834243:1	145597114	145600329	D	glutathione S-transferase mu 2 (muscle) [Source:HGNC Symbol;Acc:HGNC:4634]
ENSCJAG00000004068	NOVEL	protein_coding	ENSCJAG00000004068	chromosome:C_jacchus3.2.1:X:1:142054208:1	39719897	39721426	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007382}  [Source:UniProtKB/TrEMBL;Acc:F6QPP9]
ENSCJAG00000016734	KNOWN_BY_PROJECTION	protein_coding	ACSBG2	chromosome:C_jacchus3.2.1:22:1:49145316:1	5886429	5929840	D	acyl-CoA synthetase bubblegum family member 2 [Source:HGNC Symbol;Acc:HGNC:24174]
ENSCJAG00000004005	KNOWN_BY_PROJECTION	protein_coding	USP9X	chromosome:C_jacchus3.2.1:X:1:142054208:1	40018257	40136253	D	ubiquitin specific peptidase 9, X-linked [Source:HGNC Symbol;Acc:HGNC:12632]
ENSCJAG00000003168	KNOWN	protein_coding	ENSCJAG00000003168	chromosome:C_jacchus3.2.1:7:1:155834243:1	145630672	145637330	R	Glutathione S-transferase Mu 3 {ECO:0000313|EMBL:JAB20958.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045062}  [Source:UniProtKB/TrEMBL;Acc:F6TIC3]
ENSCJAG00000009169	KNOWN_BY_PROJECTION	protein_coding	NMT2	chromosome:C_jacchus3.2.1:7:1:155834243:1	12900607	12966565	R	N-myristoyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:7858]
ENSCJAG00000016714	KNOWN_BY_PROJECTION	protein_coding	MLLT1	chromosome:C_jacchus3.2.1:22:1:49145316:1	5947339	5966637	R	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 [Source:HGNC Symbol;Acc:HGNC:7134]
ENSCJAG00000016705	KNOWN_BY_PROJECTION	protein_coding	ACER1	chromosome:C_jacchus3.2.1:22:1:49145316:1	6043413	6066847	R	alkaline ceramidase 1 [Source:HGNC Symbol;Acc:HGNC:18356]
ENSCJAG00000008631	KNOWN_BY_PROJECTION	protein_coding	SIRT4	chromosome:C_jacchus3.2.1:9:1:124281992:1	111124080	111133952	D	sirtuin 4 [Source:HGNC Symbol;Acc:HGNC:14932]
ENSCJAG00000020985	KNOWN_BY_PROJECTION	protein_coding	CD74	chromosome:C_jacchus3.2.1:2:1:204313951:1	47874838	47887709	R	CD74 molecule, major histocompatibility complex, class II invariant chain [Source:HGNC Symbol;Acc:HGNC:1697]
ENSCJAG00000014504	KNOWN_BY_PROJECTION	protein_coding	NAT8L	chromosome:C_jacchus3.2.1:3:1:190850796:1	188838775	188859792	R	N-acetyltransferase 8-like (GCN5-related, putative) [Source:HGNC Symbol;Acc:HGNC:26742]
ENSCJAG00000010800	KNOWN	protein_coding	HMGN3	chromosome:C_jacchus3.2.1:4:1:171630274:1	77663739	77696396	R	High mobility group nucleosome-binding domain-containing protein 3 isoform HMGN3a {ECO:0000313|EMBL:JAB14939.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019956}  [Source:UniProtKB/TrEMBL;Acc:F6Z8D9]
ENSCJAG00000008624	KNOWN_BY_PROJECTION	protein_coding	PLA2G1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	111157856	111166166	R	phospholipase A2, group IB (pancreas) [Source:HGNC Symbol;Acc:HGNC:9030]
ENSCJAG00000009455	KNOWN_BY_PROJECTION	protein_coding	PIWIL3	chromosome:C_jacchus3.2.1:1:1:210400635:1	187743803	187785082	D	piwi-like RNA-mediated gene silencing 3 [Source:HGNC Symbol;Acc:HGNC:18443]
ENSCJAG00000016699	KNOWN	protein_coding	CLPP	chromosome:C_jacchus3.2.1:22:1:49145316:1	6089372	6096589	D	ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}  [Source:UniProtKB/TrEMBL;Acc:F6XF21]
ENSCJAG00000001915	KNOWN_BY_PROJECTION	protein_coding	NELFA	chromosome:C_jacchus3.2.1:3:1:190850796:1	188909180	188919016	D	negative elongation factor complex member A [Source:HGNC Symbol;Acc:HGNC:12768]
ENSCJAG00000016691	KNOWN	protein_coding	ALKBH7	chromosome:C_jacchus3.2.1:22:1:49145316:1	6102258	6104489	D	Putative alpha-ketoglutarate-dependent dioxygenase ABH7 {ECO:0000313|EMBL:JAB01644.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030715}  [Source:UniProtKB/TrEMBL;Acc:F6Y3W4]
ENSCJAG00000010842	KNOWN	protein_coding	LCA5	chromosome:C_jacchus3.2.1:4:1:171630274:1	77952223	78021981	R	Lebercilin {ECO:0000313|EMBL:JAB16201.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020009}  [Source:UniProtKB/TrEMBL;Acc:F7E2G3]
ENSCJAG00000009878	KNOWN_BY_PROJECTION	protein_coding	SCN5A	chromosome:C_jacchus3.2.1:17:1:74750902:1	68886835	69124498	R	sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
ENSCJAG00000008578	KNOWN	protein_coding	MSI1	chromosome:C_jacchus3.2.1:9:1:124281992:1	111179005	111207458	R	RNA-binding protein Musashi homolog 1 {ECO:0000313|EMBL:JAB12283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015866}  [Source:UniProtKB/TrEMBL;Acc:F7GG14]
ENSCJAG00000003180	KNOWN_BY_PROJECTION	protein_coding	EPS8L3	chromosome:C_jacchus3.2.1:7:1:155834243:1	145639561	145653924	R	EPS8-like 3 [Source:HGNC Symbol;Acc:HGNC:21297]
ENSCJAG00000009381	KNOWN	protein_coding	SGSM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	187864655	187990593	D	Small G protein signaling modulator 1 isoform 3 {ECO:0000313|EMBL:JAB13819.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017298}  [Source:UniProtKB/TrEMBL;Acc:F7IPB5]
ENSCJAG00000016688	KNOWN_BY_PROJECTION	protein_coding	PSPN	chromosome:C_jacchus3.2.1:22:1:49145316:1	6104744	6105299	R	persephin [Source:HGNC Symbol;Acc:HGNC:9579]
ENSCJAG00000009362	KNOWN_BY_PROJECTION	protein_coding	KIAA1671	chromosome:C_jacchus3.2.1:1:1:210400635:1	188099171	188279981	D	KIAA1671 [Source:HGNC Symbol;Acc:HGNC:29345]
ENSCJAG00000001876	KNOWN	protein_coding	WHSC1	chromosome:C_jacchus3.2.1:3:1:190850796:1	188923639	189000840	R	Histone-lysine N-methyltransferase NSD2 isoform 3 {ECO:0000313|EMBL:JAB17906.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042971}  [Source:UniProtKB/TrEMBL;Acc:F6UFW4]
ENSCJAG00000009143	KNOWN	protein_coding	FAM171A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	13014030	13083262	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050285}  [Source:UniProtKB/TrEMBL;Acc:F7EYX6]
ENSCJAG00000016669	KNOWN	protein_coding	GTF2F1	chromosome:C_jacchus3.2.1:22:1:49145316:1	6110863	6129757	R	General transcription factor IIF subunit 1 {ECO:0000313|EMBL:JAB16009.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030701}  [Source:UniProtKB/TrEMBL;Acc:F6YN43]
ENSCJAG00000020981	NOVEL	protein_coding	ENSCJAG00000020981	chromosome:C_jacchus3.2.1:2:1:204313951:1	47923250	47929790	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039037}  [Source:UniProtKB/TrEMBL;Acc:F7F2G3]
ENSCJAG00000009348	KNOWN_BY_PROJECTION	protein_coding	CRYBB3	chromosome:C_jacchus3.2.1:1:1:210400635:1	188289659	188296726	D	crystallin, beta B3 [Source:HGNC Symbol;Acc:HGNC:2400]
ENSCJAG00000001174	KNOWN	protein_coding	ENSCJAG00000001174	chromosome:C_jacchus3.2.1:9:1:124281992:1	111293487	111296114	D	Cytochrome c oxidase subunit 6A, mitochondrial {ECO:0000256|RuleBase:RU004397}  [Source:UniProtKB/TrEMBL;Acc:F7I4Z3]
ENSCJAG00000001180	KNOWN	protein_coding	TRIAP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	111298254	111301272	R	TP53-regulated inhibitor of apoptosis 1 {ECO:0000313|EMBL:JAB05710.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002025}  [Source:UniProtKB/TrEMBL;Acc:F7I4Y8]
ENSCJAG00000020973	KNOWN	protein_coding	NDST1	chromosome:C_jacchus3.2.1:2:1:204313951:1	47983031	48039929	D	Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 {ECO:0000313|EMBL:JAB07323.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032886}  [Source:UniProtKB/TrEMBL;Acc:F7HGK6]
ENSCJAG00000001183	KNOWN	protein_coding	GATC	chromosome:C_jacchus3.2.1:9:1:124281992:1	111301341	111311030	D	Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03149}  [Source:UniProtKB/TrEMBL;Acc:F7I2M5]
ENSCJAG00000010860	KNOWN_BY_PROJECTION	protein_coding	SH3BGRL2	chromosome:C_jacchus3.2.1:4:1:171630274:1	78115224	78181622	D	SH3 domain binding glutamate-rich protein like 2 [Source:HGNC Symbol;Acc:HGNC:15567]
ENSCJAG00000001187	KNOWN_BY_PROJECTION	protein_coding	SRSF9	chromosome:C_jacchus3.2.1:9:1:124281992:1	111312898	111320426	R	serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:HGNC:10791]
ENSCJAG00000022376	NOVEL	protein_coding	ENSCJAG00000022376	chromosome:C_jacchus3.2.1:4:1:171630274:1	78208653	78210086	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025324}  [Source:UniProtKB/TrEMBL;Acc:F7BIZ6]
ENSCJAG00000009080	KNOWN_BY_PROJECTION	protein_coding	ITGA8	chromosome:C_jacchus3.2.1:7:1:155834243:1	13316765	13513255	R	integrin, alpha 8 [Source:HGNC Symbol;Acc:HGNC:6144]
ENSCJAG00000001192	NOVEL	protein_coding	ENSCJAG00000001192	chromosome:C_jacchus3.2.1:9:1:124281992:1	111352457	111355237	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002053}  [Source:UniProtKB/TrEMBL;Acc:F7I0A5]
ENSCJAG00000010867	KNOWN	protein_coding	ELOVL4	chromosome:C_jacchus3.2.1:4:1:171630274:1	78428820	78460094	R	Elongation of very long chain fatty acids protein {ECO:0000256|RuleBase:RU361115}  [Source:UniProtKB/TrEMBL;Acc:F7HHW6]
ENSCJAG00000020374	KNOWN	protein_coding	BAG3	chromosome:C_jacchus3.2.1:12:1:121768101:1	107458202	107486370	D	BAG family molecular chaperone regulator 3 {ECO:0000313|EMBL:JAB17368.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037872}  [Source:UniProtKB/TrEMBL;Acc:F6YVC7]
ENSCJAG00000020969	KNOWN_BY_PROJECTION	protein_coding	SYNPO	chromosome:C_jacchus3.2.1:2:1:204313951:1	48083401	48139702	D	synaptopodin [Source:HGNC Symbol;Acc:HGNC:30672]
ENSCJAG00000009338	KNOWN	protein_coding	CRYBB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	188310193	188318508	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043240}  [Source:UniProtKB/TrEMBL;Acc:F7IAH0]
ENSCJAG00000020967	KNOWN_BY_PROJECTION	protein_coding	MYOZ3	chromosome:C_jacchus3.2.1:2:1:204313951:1	48145001	48163036	D	myozenin 3 [Source:HGNC Symbol;Acc:HGNC:18565]
ENSCJAG00000001205	KNOWN	protein_coding	COQ5	chromosome:C_jacchus3.2.1:9:1:124281992:1	111360153	111383716	R	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial {ECO:0000313|EMBL:JAB05364.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002097}  [Source:UniProtKB/TrEMBL;Acc:F7HVF5]
ENSCJAG00000003199	KNOWN_BY_PROJECTION	protein_coding	CSF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	145791147	145812849	D	colony stimulating factor 1 (macrophage) [Source:HGNC Symbol;Acc:HGNC:2432]
ENSCJAG00000010886	KNOWN_BY_PROJECTION	protein_coding	TTK	chromosome:C_jacchus3.2.1:4:1:171630274:1	78531422	78581571	D	TTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]
ENSCJAG00000009283	KNOWN	protein_coding	ADRBK2	chromosome:C_jacchus3.2.1:1:1:210400635:1	188422219	188588132	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017097}  [Source:UniProtKB/TrEMBL;Acc:F7IPG3]
ENSCJAG00000020963	KNOWN_BY_PROJECTION	protein_coding	RBM22	chromosome:C_jacchus3.2.1:2:1:204313951:1	48178988	48188353	R	RNA binding motif protein 22 [Source:HGNC Symbol;Acc:HGNC:25503]
ENSCJAG00000002014	NOVEL	protein_coding	ENSCJAG00000002014	chromosome:C_jacchus3.2.1:7:1:155834243:1	145796546	145796701	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030752}  [Source:UniProtKB/TrEMBL;Acc:F6W8Z5]
ENSCJAG00000010814	KNOWN_BY_PROJECTION	protein_coding	TEX14	chromosome:C_jacchus3.2.1:5:1:159171411:1	99118129	99236195	D	testis expressed 14 [Source:HGNC Symbol;Acc:HGNC:11737]
ENSCJAG00000001219	KNOWN	protein_coding	RNF10	chromosome:C_jacchus3.2.1:9:1:124281992:1	111392236	111532163	D	Calcium-binding protein 1 isoform 1 {ECO:0000313|EMBL:JAB02667.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002136}  [Source:UniProtKB/TrEMBL;Acc:F7IJ07]
ENSCJAG00000016627	KNOWN_BY_PROJECTION	protein_coding	KHSRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	6146245	6156585	R	KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
ENSCJAG00000009028	KNOWN	protein_coding	FAM188A	chromosome:C_jacchus3.2.1:7:1:155834243:1	13564234	13656889	R	Protein FAM188A {ECO:0000313|EMBL:JAB25480.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016630}  [Source:UniProtKB/TrEMBL;Acc:F6Y109]
ENSCJAG00000014022	KNOWN_BY_PROJECTION	protein_coding	VEZF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	99346763	99415268	D	vascular endothelial zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:12949]
ENSCJAG00000014048	NOVEL	pseudogene	ENSCJAG00000014048	chromosome:C_jacchus3.2.1:5:1:159171411:1	99354518	99355719	R	<no descrition>
ENSCJAG00000016615	KNOWN_BY_PROJECTION	protein_coding	SLC25A41	chromosome:C_jacchus3.2.1:22:1:49145316:1	6160223	6168813	R	solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:HGNC:28533]
ENSCJAG00000014008	KNOWN	protein_coding	MRPS23	chromosome:C_jacchus3.2.1:5:1:159171411:1	99370130	99545194	D	28S ribosomal protein S23, mitochondrial {ECO:0000313|EMBL:JAB25497.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025755}  [Source:UniProtKB/TrEMBL;Acc:F6VXA9]
ENSCJAG00000035311	KNOWN	protein_coding	SRSF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	99378851	99385288	D	Serine/arginine-rich splicing factor 1 isoform 2 {ECO:0000313|EMBL:JAB10161.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049172}  [Source:UniProtKB/TrEMBL;Acc:F7A0I3]
ENSCJAG00000016577	KNOWN	protein_coding	SLC25A23	chromosome:C_jacchus3.2.1:22:1:49145316:1	6175382	6196081	R	Calcium-binding mitochondrial carrier protein SCaMC-3 {ECO:0000313|EMBL:JAB07385.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030560}  [Source:UniProtKB/TrEMBL;Acc:F6W9L0]
ENSCJAG00000032256	NOVEL	pseudogene	ENSCJAG00000032256	chromosome:C_jacchus3.2.1:X:1:142054208:1	40146297	40146924	D	<no descrition>
ENSCJAG00000006411	NOVEL	protein_coding	ENSCJAG00000006411	chromosome:C_jacchus3.2.1:10:1:132174527:1	48434476	48435256	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7IQW4]
ENSCJAG00000003233	KNOWN	protein_coding	AHCYL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	145862328	145903601	D	Adenosylhomocysteinase {ECO:0000256|RuleBase:RU000548}  [Source:UniProtKB/TrEMBL;Acc:F7H743]
ENSCJAG00000006385	KNOWN_BY_PROJECTION	protein_coding	NYNRIN	chromosome:C_jacchus3.2.1:10:1:132174527:1	48436443	48457326	D	NYN domain and retroviral integrase containing [Source:HGNC Symbol;Acc:HGNC:20165]
ENSCJAG00000014010	KNOWN	protein_coding	CUEDC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	99482411	99523814	D	CUE domain-containing protein 1 {ECO:0000313|EMBL:JAB26315.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025780}  [Source:UniProtKB/TrEMBL;Acc:F6URI2]
ENSCJAG00000006381	KNOWN	protein_coding	CBLN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	48465717	48468730	R	Cerebellin-3 {ECO:0000313|EMBL:JAB31859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011770}  [Source:UniProtKB/TrEMBL;Acc:F7FM79]
ENSCJAG00000006373	KNOWN	protein_coding	KHNYN	chromosome:C_jacchus3.2.1:10:1:132174527:1	48470418	48480964	D	Protein KHNYN {ECO:0000313|EMBL:JAB07773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011757}  [Source:UniProtKB/TrEMBL;Acc:F7G0B9]
ENSCJAG00000013998	KNOWN_BY_PROJECTION	protein_coding	MSI2	chromosome:C_jacchus3.2.1:5:1:159171411:1	99713668	100151337	R	musashi RNA-binding protein 2 [Source:HGNC Symbol;Acc:HGNC:18585]
ENSCJAG00000003112	KNOWN_BY_PROJECTION	protein_coding	MYO18B	chromosome:C_jacchus3.2.1:1:1:210400635:1	188621501	188906533	D	myosin XVIIIB [Source:HGNC Symbol;Acc:HGNC:18150]
ENSCJAG00000014007	NOVEL	protein_coding	ENSCJAG00000014007	chromosome:C_jacchus3.2.1:5:1:159171411:1	100001620	100002482	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025752}  [Source:UniProtKB/TrEMBL;Acc:F6VXC8]
ENSCJAG00000016567	KNOWN	protein_coding	CRB3	chromosome:C_jacchus3.2.1:22:1:49145316:1	6199916	6203317	D	Crumbs protein homolog 3 isoform a {ECO:0000313|EMBL:JAB08000.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046922}  [Source:UniProtKB/TrEMBL;Acc:F7I870]
ENSCJAG00000013990	KNOWN_BY_PROJECTION	protein_coding	AKAP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	100285364	100301183	R	A kinase (PRKA) anchor protein 1 [Source:HGNC Symbol;Acc:HGNC:367]
ENSCJAG00000013988	NOVEL	protein_coding	ENSCJAG00000013988	chromosome:C_jacchus3.2.1:5:1:159171411:1	100363097	100364241	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025708}  [Source:UniProtKB/TrEMBL;Acc:F6XR51]
ENSCJAG00000006362	KNOWN	protein_coding	SDR39U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	48479392	48482429	R	Epimerase family protein SDR39U1 {ECO:0000313|EMBL:JAB31605.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011739}  [Source:UniProtKB/TrEMBL;Acc:F7GCR1]
ENSCJAG00000013972	KNOWN	protein_coding	SCPEP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	100403394	100434719	R	Retinoid-inducible serine carboxypeptidase {ECO:0000313|EMBL:JAB07844.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025705}  [Source:UniProtKB/TrEMBL;Acc:F6XR88]
ENSCJAG00000009050	KNOWN	protein_coding	DDX3X	chromosome:C_jacchus3.2.1:X:1:142054208:1	40214516	40230609	D	ATP-dependent RNA helicase DDX3X isoform 1 {ECO:0000313|EMBL:JAB08241.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016767}  [Source:UniProtKB/TrEMBL;Acc:F7AL37]
ENSCJAG00000003084	KNOWN_BY_PROJECTION	protein_coding	SEZ6L	chromosome:C_jacchus3.2.1:1:1:210400635:1	189191577	189287191	D	seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
ENSCJAG00000020943	KNOWN	protein_coding	DCTN4	chromosome:C_jacchus3.2.1:2:1:204313951:1	48197006	48240348	R	Dynactin subunit 4 isoform b {ECO:0000313|EMBL:JAB02837.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038989}  [Source:UniProtKB/TrEMBL;Acc:F7IIG9]
ENSCJAG00000013960	KNOWN_BY_PROJECTION	protein_coding	COIL	chromosome:C_jacchus3.2.1:5:1:159171411:1	100458407	100480104	D	coilin [Source:HGNC Symbol;Acc:HGNC:2184]
ENSCJAG00000009020	KNOWN	protein_coding	PTER	chromosome:C_jacchus3.2.1:7:1:155834243:1	14211739	14286778	D	Phosphotriesterase-related protein isoform 1 {ECO:0000313|EMBL:JAB05169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016528}  [Source:UniProtKB/TrEMBL;Acc:F7C4K6]
ENSCJAG00000013946	KNOWN_BY_PROJECTION	protein_coding	TRIM25	chromosome:C_jacchus3.2.1:5:1:159171411:1	100493075	100513015	D	tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]
ENSCJAG00000008771	KNOWN_BY_PROJECTION	protein_coding	ASPHD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	189337277	189347341	D	aspartate beta-hydroxylase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30437]
ENSCJAG00000013940	NOVEL	pseudogene	ENSCJAG00000013940	chromosome:C_jacchus3.2.1:5:1:159171411:1	100529368	100530113	D	<no descrition>
ENSCJAG00000016543	KNOWN_BY_PROJECTION	protein_coding	DENND1C	chromosome:C_jacchus3.2.1:22:1:49145316:1	6203289	6221451	R	DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
ENSCJAG00000009016	KNOWN_BY_PROJECTION	protein_coding	C1QL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	14287574	14294449	R	complement component 1, q subcomponent-like 3 [Source:HGNC Symbol;Acc:HGNC:19359]
ENSCJAG00000020942	KNOWN	protein_coding	SMIM3	chromosome:C_jacchus3.2.1:2:1:204313951:1	48269738	48290249	D	Putative small membrane protein NID67 {ECO:0000313|EMBL:JAB02978.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038958}  [Source:UniProtKB/TrEMBL;Acc:F7IN36]
ENSCJAG00000013909	KNOWN	protein_coding	DGKE	chromosome:C_jacchus3.2.1:5:1:159171411:1	100544078	100571758	R	Diacylglycerol kinase {ECO:0000256|RuleBase:RU361128}  [Source:UniProtKB/TrEMBL;Acc:F7CSL6]
ENSCJAG00000008991	KNOWN	protein_coding	RSU1	chromosome:C_jacchus3.2.1:7:1:155834243:1	14370218	14611356	R	Ras suppressor protein 1 isoform 1 {ECO:0000313|EMBL:JAB09992.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016485}  [Source:UniProtKB/TrEMBL;Acc:F6VN76]
ENSCJAG00000020937	NOVEL	protein_coding	ENSCJAG00000020937	chromosome:C_jacchus3.2.1:2:1:204313951:1	48313221	48320252	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038956}  [Source:UniProtKB/TrEMBL;Acc:F7IN38]
ENSCJAG00000008718	KNOWN	protein_coding	HPS4	chromosome:C_jacchus3.2.1:1:1:210400635:1	189357814	189386515	R	Hermansky-Pudlak syndrome 4 protein isoform a {ECO:0000313|EMBL:JAB46051.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016094}  [Source:UniProtKB/TrEMBL;Acc:F6V6M1]
ENSCJAG00000013903	NOVEL	pseudogene	ENSCJAG00000013903	chromosome:C_jacchus3.2.1:5:1:159171411:1	100820646	100821344	R	<no descrition>
ENSCJAG00000020377	NOVEL	protein_coding	ENSCJAG00000020377	chromosome:C_jacchus3.2.1:12:1:121768101:1	107468180	107501477	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037873}  [Source:UniProtKB/TrEMBL;Acc:F6YVB8]
ENSCJAG00000020933	NOVEL	protein_coding	ENSCJAG00000020933	chromosome:C_jacchus3.2.1:2:1:204313951:1	48332104	48340840	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038947}  [Source:UniProtKB/TrEMBL;Acc:F7IQF5]
ENSCJAG00000020378	NOVEL	protein_coding	ENSCJAG00000020378	chromosome:C_jacchus3.2.1:12:1:121768101:1	107495482	107496163	R	Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}  [Source:UniProtKB/TrEMBL;Acc:F6YVA9]
ENSCJAG00000001859	KNOWN	protein_coding	LETM1	chromosome:C_jacchus3.2.1:3:1:190850796:1	189053461	189093581	D	LETM1 and EF-hand domain-containing protein 1, mitochondrial {ECO:0000313|EMBL:JAB14084.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003357}  [Source:UniProtKB/TrEMBL;Acc:F7E9T5]
ENSCJAG00000020930	KNOWN_BY_PROJECTION	protein_coding	ZNF300	chromosome:C_jacchus3.2.1:2:1:204313951:1	48425776	48437017	R	zinc finger protein 300 [Source:HGNC Symbol;Acc:HGNC:13091]
ENSCJAG00000010067	KNOWN_BY_PROJECTION	protein_coding	ACVR2B	chromosome:C_jacchus3.2.1:17:1:74750902:1	68919593	68949053	D	activin A receptor, type IIB [Source:HGNC Symbol;Acc:HGNC:174]
ENSCJAG00000010953	KNOWN	protein_coding	BCKDHB	chromosome:C_jacchus3.2.1:4:1:171630274:1	78663525	78922404	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020231}  [Source:UniProtKB/TrEMBL;Acc:F7ET80]
ENSCJAG00000020929	NOVEL	pseudogene	ENSCJAG00000020929	chromosome:C_jacchus3.2.1:2:1:204313951:1	48440444	48440984	D	<no descrition>
ENSCJAG00000020924	KNOWN_BY_PROJECTION	protein_coding	GPX3	chromosome:C_jacchus3.2.1:2:1:204313951:1	48536271	48545054	D	glutathione peroxidase 3 (plasma) [Source:HGNC Symbol;Acc:HGNC:4555]
ENSCJAG00000020379	KNOWN	protein_coding	INPP5F	chromosome:C_jacchus3.2.1:12:1:121768101:1	107542440	107649220	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037894}  [Source:UniProtKB/TrEMBL;Acc:F6YUJ0]
ENSCJAG00000011217	NOVEL	protein_coding	ENSCJAG00000011217	chromosome:C_jacchus3.2.1:5:1:159171411:1	100907998	100932304	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020659}  [Source:UniProtKB/TrEMBL;Acc:F7DZH9]
ENSCJAG00000011220	NOVEL	protein_coding	ENSCJAG00000011220	chromosome:C_jacchus3.2.1:5:1:159171411:1	100915193	100917118	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050156}  [Source:UniProtKB/TrEMBL;Acc:F7H497]
ENSCJAG00000009565	KNOWN_BY_PROJECTION	protein_coding	FAM46A	chromosome:C_jacchus3.2.1:4:1:171630274:1	80355843	80362849	R	family with sequence similarity 46, member A [Source:HGNC Symbol;Acc:HGNC:18345]
ENSCJAG00000011229	KNOWN_BY_PROJECTION	protein_coding	ANKFN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	100943116	101257641	R	ankyrin-repeat and fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26766]
ENSCJAG00000006344	KNOWN	protein_coding	CMA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	48522113	48525189	R	Chymase preproprotein {ECO:0000313|EMBL:JAB16306.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011712}  [Source:UniProtKB/TrEMBL;Acc:F7GM64]
ENSCJAG00000008967	KNOWN_BY_PROJECTION	protein_coding	CUBN	chromosome:C_jacchus3.2.1:7:1:155834243:1	14618489	14902238	R	cubilin (intrinsic factor-cobalamin receptor) [Source:HGNC Symbol;Acc:HGNC:2548]
ENSCJAG00000001819	KNOWN_BY_PROJECTION	protein_coding	FGFR3	chromosome:C_jacchus3.2.1:3:1:190850796:1	189103267	189108759	R	fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
ENSCJAG00000003306	KNOWN	protein_coding	STRIP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	145918828	145959458	D	Protein FAM40A isoform 1 {ECO:0000313|EMBL:JAB08899.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006098}  [Source:UniProtKB/TrEMBL;Acc:F7FY24]
ENSCJAG00000011246	KNOWN	protein_coding	PCTP	chromosome:C_jacchus3.2.1:5:1:159171411:1	101590097	101614942	R	Phosphatidylcholine transfer protein isoform 1 {ECO:0000313|EMBL:JAB09188.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020734}  [Source:UniProtKB/TrEMBL;Acc:F7H184]
ENSCJAG00000001805	NOVEL	protein_coding	ENSCJAG00000001805	chromosome:C_jacchus3.2.1:3:1:190850796:1	189168597	189195182	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003226}  [Source:UniProtKB/TrEMBL;Acc:F7GUW6]
ENSCJAG00000022824	KNOWN	protein_coding	TMEM100	chromosome:C_jacchus3.2.1:5:1:159171411:1	101642540	101645723	D	Transmembrane protein 100 {ECO:0000313|EMBL:JAB17322.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041405}  [Source:UniProtKB/TrEMBL;Acc:F7DFB2]
ENSCJAG00000010063	KNOWN_BY_PROJECTION	protein_coding	EXOG	chromosome:C_jacchus3.2.1:17:1:74750902:1	68964434	68997144	D	endo/exonuclease (5'-3'), endonuclease G-like [Source:HGNC Symbol;Acc:HGNC:3347]
ENSCJAG00000020390	KNOWN	protein_coding	MCMBP	chromosome:C_jacchus3.2.1:12:1:121768101:1	107651245	107696853	R	Mini-chromosome maintenance complex-binding protein isoform 2 {ECO:0000313|EMBL:JAB07795.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037910}  [Source:UniProtKB/TrEMBL;Acc:F6WFM6]
ENSCJAG00000011269	KNOWN	protein_coding	MMD	chromosome:C_jacchus3.2.1:5:1:159171411:1	101899673	101928783	D	Monocyte to macrophage differentiation factor {ECO:0000313|EMBL:JAB02438.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020781}  [Source:UniProtKB/TrEMBL;Acc:F7GJ71]
ENSCJAG00000031394	KNOWN_BY_PROJECTION	protein_coding	SCN10A	chromosome:C_jacchus3.2.1:17:1:74750902:1	69172677	69283669	R	sodium channel, voltage gated, type X alpha subunit [Source:HGNC Symbol;Acc:HGNC:10582]
ENSCJAG00000008709	KNOWN_BY_PROJECTION	protein_coding	SRRD	chromosome:C_jacchus3.2.1:1:1:210400635:1	189386623	189394942	D	SRR1 domain containing [Source:HGNC Symbol;Acc:HGNC:33910]
ENSCJAG00000001790	KNOWN	protein_coding	SLBP	chromosome:C_jacchus3.2.1:3:1:190850796:1	189196876	189237271	D	Histone RNA hairpin-binding protein {ECO:0000313|EMBL:JAB02660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044591}  [Source:UniProtKB/TrEMBL;Acc:F7FI07]
ENSCJAG00000009856	KNOWN_BY_PROJECTION	protein_coding	SCN11A	chromosome:C_jacchus3.2.1:17:1:74750902:1	69335570	69430567	R	sodium channel, voltage gated, type XI alpha subunit [Source:HGNC Symbol;Acc:HGNC:10583]
ENSCJAG00000009418	KNOWN_BY_PROJECTION	protein_coding	IBTK	chromosome:C_jacchus3.2.1:4:1:171630274:1	80826478	80915067	R	inhibitor of Bruton agammaglobulinemia tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
ENSCJAG00000008628	KNOWN	protein_coding	TFIP11	chromosome:C_jacchus3.2.1:1:1:210400635:1	189395228	189415754	R	Tuftelin-interacting protein 11 {ECO:0000256|PIRNR:PIRNR017706}  [Source:UniProtKB/TrEMBL;Acc:F6YQH7]
ENSCJAG00000001309	KNOWN	protein_coding	POP5	chromosome:C_jacchus3.2.1:9:1:124281992:1	111440679	111443342	R	Ribonuclease P/MRP protein subunit POP5 {ECO:0000256|PIRNR:PIRNR023803}  [Source:UniProtKB/TrEMBL;Acc:F7ITC9]
ENSCJAG00000011298	KNOWN	protein_coding	HLF	chromosome:C_jacchus3.2.1:5:1:159171411:1	102002984	102063005	R	Hepatic leukemia factor {ECO:0000313|EMBL:JAB05904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020807}  [Source:UniProtKB/TrEMBL;Acc:F7FH72]
ENSCJAG00000011311	KNOWN_BY_PROJECTION	protein_coding	STXBP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	102166457	102327250	R	syntaxin binding protein 4 [Source:HGNC Symbol;Acc:HGNC:19694]
ENSCJAG00000019189	KNOWN	protein_coding	SEC23IP	chromosome:C_jacchus3.2.1:12:1:121768101:1	107706853	107771881	D	SEC23-interacting protein {ECO:0000313|EMBL:JAB11676.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042634}  [Source:UniProtKB/TrEMBL;Acc:F7ANN9]
ENSCJAG00000011341	KNOWN	protein_coding	COX11	chromosome:C_jacchus3.2.1:5:1:159171411:1	102345101	102352431	D	Cytochrome c oxidase assembly protein COX11, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB10521.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049658}  [Source:UniProtKB/TrEMBL;Acc:F6ZDP6]
ENSCJAG00000008937	KNOWN	protein_coding	TRDMT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	14922969	14975195	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049737}; tRNA (Cytosine(38)-C(5))-methyltransferase {ECO:0000313|EMBL:JAB17742.1}  [Source:UniProtKB/TrEMBL;Acc:F6URL6]
ENSCJAG00000001802	KNOWN	protein_coding	TMEM129	chromosome:C_jacchus3.2.1:3:1:190850796:1	189197029	189202362	D	Transmembrane protein 129 isoform a {ECO:0000313|EMBL:JAB03000.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003217}  [Source:UniProtKB/TrEMBL;Acc:F7GUY1]
ENSCJAG00000016534	KNOWN_BY_PROJECTION	protein_coding	TUBB4A	chromosome:C_jacchus3.2.1:22:1:49145316:1	6233419	6244193	R	tubulin, beta 4A class IVa [Source:HGNC Symbol;Acc:HGNC:20774]
ENSCJAG00000001781	KNOWN	protein_coding	FAM53A	chromosome:C_jacchus3.2.1:3:1:190850796:1	189255424	189275690	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003191}  [Source:UniProtKB/TrEMBL;Acc:F7HFP8]
ENSCJAG00000035024	NOVEL	protein_coding	ENSCJAG00000035024	chromosome:C_jacchus3.2.1:9:1:124281992:1	111450437	111451155	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7EU82]
ENSCJAG00000009458	KNOWN_BY_PROJECTION	protein_coding	NKX1-1	chromosome:C_jacchus3.2.1:3:1:190850796:1	189488155	189663771	D	NK1 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:24975]
ENSCJAG00000011347	KNOWN	protein_coding	TOM1L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	102351567	102409798	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020924}  [Source:UniProtKB/TrEMBL;Acc:F7HB32]
ENSCJAG00000001314	NOVEL	pseudogene	ENSCJAG00000001314	chromosome:C_jacchus3.2.1:9:1:124281992:1	111479728	111480585	D	<no descrition>
ENSCJAG00000016530	KNOWN_BY_PROJECTION	protein_coding	TNFSF9	chromosome:C_jacchus3.2.1:22:1:49145316:1	6269271	6272552	D	tumor necrosis factor (ligand) superfamily, member 9 [Source:HGNC Symbol;Acc:HGNC:11939]
ENSCJAG00000008612	KNOWN_BY_PROJECTION	protein_coding	TPST2	chromosome:C_jacchus3.2.1:1:1:210400635:1	189424585	189498013	R	tyrosylprotein sulfotransferase 2 [Source:HGNC Symbol;Acc:HGNC:12021]
ENSCJAG00000016526	KNOWN_BY_PROJECTION	protein_coding	CD70	chromosome:C_jacchus3.2.1:22:1:49145316:1	6317798	6324476	R	CD70 molecule [Source:HGNC Symbol;Acc:HGNC:11937]
ENSCJAG00000001316	KNOWN	protein_coding	MLEC	chromosome:C_jacchus3.2.1:9:1:124281992:1	111551024	111565883	D	Malectin {ECO:0000313|EMBL:JAB08934.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002316}  [Source:UniProtKB/TrEMBL;Acc:F7IL61]
ENSCJAG00000009461	KNOWN_BY_PROJECTION	protein_coding	UVSSA	chromosome:C_jacchus3.2.1:3:1:190850796:1	189509026	189549489	R	UV-stimulated scaffold protein A [Source:HGNC Symbol;Acc:HGNC:29304]
ENSCJAG00000001328	KNOWN	protein_coding	UNC119B	chromosome:C_jacchus3.2.1:9:1:124281992:1	111575827	111588471	D	Protein unc-119 homolog B {ECO:0000313|EMBL:JAB10892.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002329}  [Source:UniProtKB/TrEMBL;Acc:F7IL48]
ENSCJAG00000001332	KNOWN_BY_PROJECTION	protein_coding	ACADS	chromosome:C_jacchus3.2.1:9:1:124281992:1	111590540	111607249	D	acyl-CoA dehydrogenase, C-2 to C-3 short chain [Source:HGNC Symbol;Acc:HGNC:90]
ENSCJAG00000001587	KNOWN_BY_PROJECTION	protein_coding	MAEA	chromosome:C_jacchus3.2.1:3:1:190850796:1	189557051	189585030	R	macrophage erythroblast attacher [Source:HGNC Symbol;Acc:HGNC:13731]
ENSCJAG00000031291	NOVEL	protein_coding	ENSCJAG00000031291	chromosome:C_jacchus3.2.1:3:1:190850796:1	189635055	189636901	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048332}  [Source:UniProtKB/TrEMBL;Acc:F7GSX7]
ENSCJAG00000020103	NOVEL	protein_coding	ENSCJAG00000020103	chromosome:C_jacchus3.2.1:X:1:142054208:1	40288039	40294019	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037364}  [Source:UniProtKB/TrEMBL;Acc:F6YZ26]
ENSCJAG00000016236	KNOWN_BY_PROJECTION	protein_coding	VAV1	chromosome:C_jacchus3.2.1:22:1:49145316:1	6357195	6568916	D	vav 1 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12657]
ENSCJAG00000001565	NOVEL	protein_coding	ENSCJAG00000001565	chromosome:C_jacchus3.2.1:3:1:190850796:1	189664707	189691327	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002822}  [Source:UniProtKB/TrEMBL;Acc:F7IBH9]
ENSCJAG00000009048	KNOWN_BY_PROJECTION	protein_coding	NYX	chromosome:C_jacchus3.2.1:X:1:142054208:1	40330242	40351037	D	nyctalopin [Source:HGNC Symbol;Acc:HGNC:8082]
ENSCJAG00000009033	KNOWN_BY_PROJECTION	protein_coding	HNRNPC	chromosome:C_jacchus3.2.1:X:1:142054208:1	40369049	40373918	R	heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
ENSCJAG00000008688	KNOWN	protein_coding	VIM	chromosome:C_jacchus3.2.1:7:1:155834243:1	15003284	15012889	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016336}; Vimentin {ECO:0000313|EMBL:JAB31508.1}  [Source:UniProtKB/TrEMBL;Acc:F7BQY8]
ENSCJAG00000009759	KNOWN	protein_coding	WDR48	chromosome:C_jacchus3.2.1:17:1:74750902:1	69529686	69573719	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018069}; WD repeat-containing protein 48 {ECO:0000313|EMBL:JAB06145.1}  [Source:UniProtKB/TrEMBL;Acc:F7GA04]
ENSCJAG00000006340	NOVEL	protein_coding	ENSCJAG00000006340	chromosome:C_jacchus3.2.1:10:1:132174527:1	48545865	48548492	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011678}  [Source:UniProtKB/TrEMBL;Acc:F7H828]
ENSCJAG00000008892	KNOWN	protein_coding	CASK	chromosome:C_jacchus3.2.1:X:1:142054208:1	40400980	40854667	R	Peripheral plasma membrane protein CASK isoform 3 {ECO:0000313|EMBL:JAB09042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016537}  [Source:UniProtKB/TrEMBL;Acc:F7BPU5]
ENSCJAG00000020905	KNOWN_BY_PROJECTION	protein_coding	TNIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	48546000	48606628	R	TNFAIP3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16903]
ENSCJAG00000006323	KNOWN_BY_PROJECTION	protein_coding	CTSG	chromosome:C_jacchus3.2.1:10:1:132174527:1	48575230	48577930	R	cathepsin G [Source:HGNC Symbol;Acc:HGNC:2532]
ENSCJAG00000006314	KNOWN_BY_PROJECTION	protein_coding	GZMH	chromosome:C_jacchus3.2.1:10:1:132174527:1	48595513	48599054	R	granzyme H (cathepsin G-like 2, protein h-CCPX) [Source:HGNC Symbol;Acc:HGNC:4710]
ENSCJAG00000016519	KNOWN_BY_PROJECTION	protein_coding	TNFSF14	chromosome:C_jacchus3.2.1:22:1:49145316:1	6367504	6371718	R	tumor necrosis factor (ligand) superfamily, member 14 [Source:HGNC Symbol;Acc:HGNC:11930]
ENSCJAG00000006291	KNOWN	protein_coding	GZMB	chromosome:C_jacchus3.2.1:10:1:132174527:1	48603416	48606997	R	granzyme B precursor  [Source:RefSeq peptide;Acc:NP_001254677]
ENSCJAG00000011386	NOVEL	protein_coding	ENSCJAG00000011386	chromosome:C_jacchus3.2.1:5:1:159171411:1	103496029	103498279	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020930}  [Source:UniProtKB/TrEMBL;Acc:F7H5Z5]
ENSCJAG00000011391	NOVEL	protein_coding	ENSCJAG00000011391	chromosome:C_jacchus3.2.1:5:1:159171411:1	104395722	104397358	R	<no descrition>
ENSCJAG00000008618	NOVEL	protein_coding	ENSCJAG00000008618	chromosome:C_jacchus3.2.1:5:1:159171411:1	104557667	104558055	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F6QNX3]
ENSCJAG00000001353	NOVEL	protein_coding	ENSCJAG00000001353	chromosome:C_jacchus3.2.1:9:1:124281992:1	111630467	111631584	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002389}  [Source:UniProtKB/TrEMBL;Acc:F7IBS8]
ENSCJAG00000010196	NOVEL	pseudogene	ENSCJAG00000010196	chromosome:C_jacchus3.2.1:12:1:121768101:1	108174459	108174922	R	<no descrition>
ENSCJAG00000011392	KNOWN	protein_coding	CA10	chromosome:C_jacchus3.2.1:5:1:159171411:1	105348508	105908802	D	Carbonic anhydrase-related protein 10 {ECO:0000313|EMBL:JAB03319.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020988}  [Source:UniProtKB/TrEMBL;Acc:F7GIT9]
ENSCJAG00000006402	KNOWN	protein_coding	PPAPDC1A	chromosome:C_jacchus3.2.1:12:1:121768101:1	108357839	108500196	D	Phosphatidate phosphatase PPAPDC1A {ECO:0000313|EMBL:JAB14277.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011828}  [Source:UniProtKB/TrEMBL;Acc:F7DM98]
ENSCJAG00000016466	KNOWN_BY_PROJECTION	protein_coding	C3	chromosome:C_jacchus3.2.1:22:1:49145316:1	6384251	6427272	R	complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
ENSCJAG00000012473	NOVEL	protein_coding	ENSCJAG00000012473	chromosome:C_jacchus3.2.1:3:1:190850796:1	189751336	189787349	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022837}  [Source:UniProtKB/TrEMBL;Acc:F7HTI8]
ENSCJAG00000018349	KNOWN_BY_PROJECTION	protein_coding	UTP18	chromosome:C_jacchus3.2.1:5:1:159171411:1	106285758	106316552	R	UTP18 small subunit (SSU) processome component homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:24274]
ENSCJAG00000008583	KNOWN_BY_PROJECTION	protein_coding	CRYBB1	chromosome:C_jacchus3.2.1:1:1:210400635:1	189507280	189528837	R	crystallin, beta B1 [Source:HGNC Symbol;Acc:HGNC:2397]
ENSCJAG00000001359	KNOWN_BY_PROJECTION	protein_coding	SPPL3	chromosome:C_jacchus3.2.1:9:1:124281992:1	111637548	111683043	R	signal peptide peptidase like 3 [Source:HGNC Symbol;Acc:HGNC:30424]
ENSCJAG00000008564	KNOWN_BY_PROJECTION	protein_coding	CRYBA4	chromosome:C_jacchus3.2.1:1:1:210400635:1	189532926	189540800	D	crystallin, beta A4 [Source:HGNC Symbol;Acc:HGNC:2396]
ENSCJAG00000009752	KNOWN_BY_PROJECTION	protein_coding	GORASP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	69573651	69586511	R	golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
ENSCJAG00000006270	KNOWN_BY_PROJECTION	protein_coding	STXBP6	chromosome:C_jacchus3.2.1:10:1:132174527:1	48780365	49057708	R	syntaxin binding protein 6 (amisyn) [Source:HGNC Symbol;Acc:HGNC:19666]
ENSCJAG00000006263	NOVEL	protein_coding	ENSCJAG00000006263	chromosome:C_jacchus3.2.1:10:1:132174527:1	49097007	49097888	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011526}  [Source:UniProtKB/TrEMBL;Acc:F7ID98]
ENSCJAG00000006255	KNOWN_BY_PROJECTION	protein_coding	AGPAT6	chromosome:C_jacchus3.2.1:10:1:132174527:1	49427737	49428517	R	1-acylglycerol-3-phosphate O-acyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:20880]
ENSCJAG00000020170	KNOWN_BY_PROJECTION	protein_coding	MN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	190669671	190720375	R	meningioma (disrupted in balanced translocation) 1 [Source:HGNC Symbol;Acc:HGNC:7180]
ENSCJAG00000006254	NOVEL	pseudogene	ENSCJAG00000006254	chromosome:C_jacchus3.2.1:10:1:132174527:1	50277748	50278063	D	<no descrition>
ENSCJAG00000012480	NOVEL	protein_coding	ENSCJAG00000012480	chromosome:C_jacchus3.2.1:3:1:190850796:1	189751361	189753682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052415}  [Source:UniProtKB/TrEMBL;Acc:F7I9L2]
ENSCJAG00000003365	KNOWN_BY_PROJECTION	protein_coding	ALX3	chromosome:C_jacchus3.2.1:7:1:155834243:1	145944396	145955120	R	ALX homeobox 3 [Source:HGNC Symbol;Acc:HGNC:449]
ENSCJAG00000001804	KNOWN_BY_PROJECTION	protein_coding	RNF212	chromosome:C_jacchus3.2.1:3:1:190850796:1	189789266	189836224	D	ring finger protein 212 [Source:HGNC Symbol;Acc:HGNC:27729]
ENSCJAG00000006217	KNOWN	protein_coding	NOVA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	50515542	50654094	R	RNA-binding protein Nova-1 isoform 2 {ECO:0000313|EMBL:JAB18107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011435}  [Source:UniProtKB/TrEMBL;Acc:F7HNQ2]
ENSCJAG00000018369	KNOWN_BY_PROJECTION	protein_coding	MBTD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	106346739	106396756	D	mbt domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19866]
ENSCJAG00000003378	KNOWN_BY_PROJECTION	protein_coding	UBL4B	chromosome:C_jacchus3.2.1:7:1:155834243:1	145998407	145999963	D	ubiquitin-like 4B [Source:HGNC Symbol;Acc:HGNC:32309]
ENSCJAG00000020141	KNOWN_BY_PROJECTION	protein_coding	PITPNB	chromosome:C_jacchus3.2.1:1:1:210400635:1	190766178	190834794	R	phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:HGNC:9002]
ENSCJAG00000003381	KNOWN_BY_PROJECTION	protein_coding	SLC6A17	chromosome:C_jacchus3.2.1:7:1:155834243:1	146041899	146091934	D	solute carrier family 6 (neutral amino acid transporter), member 17 [Source:HGNC Symbol;Acc:HGNC:31399]
ENSCJAG00000003396	KNOWN_BY_PROJECTION	protein_coding	KCNC4	chromosome:C_jacchus3.2.1:7:1:155834243:1	146105342	146128218	D	potassium channel, voltage gated Shaw related subfamily C, member 4 [Source:HGNC Symbol;Acc:HGNC:6236]
ENSCJAG00000009719	KNOWN_BY_PROJECTION	protein_coding	TTC21A	chromosome:C_jacchus3.2.1:17:1:74750902:1	69588220	69617487	D	tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
ENSCJAG00000034559	NOVEL	protein_coding	ENSCJAG00000034559	chromosome:C_jacchus3.2.1:7:1:155834243:1	146205630	146212730	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008771}  [Source:UniProtKB/TrEMBL;Acc:F7HM73]
ENSCJAG00000020167	KNOWN_BY_PROJECTION	protein_coding	NSA2	chromosome:C_jacchus3.2.1:1:1:210400635:1	190817308	190818388	D	NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30728]
ENSCJAG00000003411	KNOWN_BY_PROJECTION	protein_coding	RBM15	chromosome:C_jacchus3.2.1:7:1:155834243:1	146229615	146237765	D	RNA binding motif protein 15 [Source:HGNC Symbol;Acc:HGNC:14959]
ENSCJAG00000020132	KNOWN_BY_PROJECTION	protein_coding	TTC28	chromosome:C_jacchus3.2.1:1:1:210400635:1	190897419	191220740	R	tetratricopeptide repeat domain 28 [Source:HGNC Symbol;Acc:HGNC:29179]
ENSCJAG00000006430	KNOWN	protein_coding	WDR11	chromosome:C_jacchus3.2.1:12:1:121768101:1	108772935	108836496	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012035}; WD repeat-containing protein 11 {ECO:0000313|EMBL:JAB09624.1}  [Source:UniProtKB/TrEMBL;Acc:F7H3Z7]
ENSCJAG00000003423	KNOWN	protein_coding	SLC16A4	chromosome:C_jacchus3.2.1:7:1:155834243:1	146255565	146284548	R	Monocarboxylate transporter 5 isoform 1 {ECO:0000313|EMBL:JAB13860.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006239}  [Source:UniProtKB/TrEMBL;Acc:F7H1E8]
ENSCJAG00000016419	KNOWN	protein_coding	GPR108	chromosome:C_jacchus3.2.1:22:1:49145316:1	6436711	6445054	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043516}  [Source:UniProtKB/TrEMBL;Acc:F7HW51]
ENSCJAG00000020131	NOVEL	protein_coding	ENSCJAG00000020131	chromosome:C_jacchus3.2.1:1:1:210400635:1	191606464	191609404	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037418}  [Source:UniProtKB/TrEMBL;Acc:F6VGT3]
ENSCJAG00000003438	KNOWN_BY_PROJECTION	protein_coding	LAMTOR5	chromosome:C_jacchus3.2.1:7:1:155834243:1	146293475	146299658	R	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:HGNC Symbol;Acc:HGNC:17955]
ENSCJAG00000018395	KNOWN_BY_PROJECTION	protein_coding	NME2	chromosome:C_jacchus3.2.1:5:1:159171411:1	106404566	106553613	R	NME/NM23 nucleoside diphosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:7850]
ENSCJAG00000003445	KNOWN_BY_PROJECTION	protein_coding	PROK1	chromosome:C_jacchus3.2.1:7:1:155834243:1	146341566	146347717	D	prokineticin 1 [Source:HGNC Symbol;Acc:HGNC:18454]
ENSCJAG00000003447	KNOWN	protein_coding	CYM	chromosome:C_jacchus3.2.1:7:1:155834243:1	146374060	146387842	D	Chymosin  [Source:UniProtKB/Swiss-Prot;Acc:Q9N2D2]
ENSCJAG00000009708	KNOWN	protein_coding	CSRNP1	chromosome:C_jacchus3.2.1:17:1:74750902:1	69621759	69625232	R	Cysteine/serine-rich nuclear protein 1 {ECO:0000313|EMBL:JAB06222.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017783}  [Source:UniProtKB/TrEMBL;Acc:F7I7E3]
ENSCJAG00000009704	KNOWN_BY_PROJECTION	protein_coding	CX3CR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	69753641	69768034	R	chemokine (C-X3-C motif) receptor 1 [Source:HGNC Symbol;Acc:HGNC:2558]
ENSCJAG00000009702	KNOWN_BY_PROJECTION	protein_coding	CCR8	chromosome:C_jacchus3.2.1:17:1:74750902:1	69813747	69817278	D	chemokine (C-C motif) receptor 8 [Source:HGNC Symbol;Acc:HGNC:1609]
ENSCJAG00000020887	KNOWN_BY_PROJECTION	protein_coding	ANXA6	chromosome:C_jacchus3.2.1:2:1:204313951:1	48623859	48686377	R	annexin A6 [Source:HGNC Symbol;Acc:HGNC:544]
ENSCJAG00000009692	KNOWN	protein_coding	SLC25A38	chromosome:C_jacchus3.2.1:17:1:74750902:1	69859912	69874447	D	Solute carrier family 25 member 38 {ECO:0000313|EMBL:JAB24392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017761}  [Source:UniProtKB/TrEMBL;Acc:F7I7I5]
ENSCJAG00000003458	NOVEL	pseudogene	ENSCJAG00000003458	chromosome:C_jacchus3.2.1:7:1:155834243:1	146420370	146421904	R	<no descrition>
ENSCJAG00000037337	KNOWN_BY_PROJECTION	protein_coding	KCNA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	146523284	146525060	R	potassium channel, voltage gated shaker related subfamily A, member 2 [Source:HGNC Symbol;Acc:HGNC:6220]
ENSCJAG00000003459	KNOWN_BY_PROJECTION	protein_coding	KCNA3	chromosome:C_jacchus3.2.1:7:1:155834243:1	146591580	146594686	R	potassium channel, voltage gated shaker related subfamily A, member 3 [Source:HGNC Symbol;Acc:HGNC:6221]
ENSCJAG00000009675	KNOWN	protein_coding	ENSCJAG00000009675	chromosome:C_jacchus3.2.1:17:1:74750902:1	69886172	69892715	D	40S ribosomal protein SA {ECO:0000256|HAMAP-Rule:MF_03016}  [Source:UniProtKB/TrEMBL;Acc:F7I9W2]
ENSCJAG00000006213	KNOWN_BY_PROJECTION	protein_coding	FOXG1	chromosome:C_jacchus3.2.1:10:1:132174527:1	52762402	52766810	D	forkhead box G1 [Source:HGNC Symbol;Acc:HGNC:3811]
ENSCJAG00000001812	KNOWN_BY_PROJECTION	protein_coding	FGFRL1	chromosome:C_jacchus3.2.1:3:1:190850796:1	189889791	189905818	R	fibroblast growth factor receptor-like 1 [Source:HGNC Symbol;Acc:HGNC:3693]
ENSCJAG00000009552	NOVEL	protein_coding	ENSCJAG00000009552	chromosome:C_jacchus3.2.1:4:1:171630274:1	80899934	80901480	D	Succinyl-CoA:3-ketoacid-coenzyme A transferase {ECO:0000256|PIRNR:PIRNR000858}  [Source:UniProtKB/TrEMBL;Acc:F7ILS0]
ENSCJAG00000009412	KNOWN	protein_coding	TPBG	chromosome:C_jacchus3.2.1:4:1:171630274:1	81007228	81011400	D	Trophoblast glycoprotein {ECO:0000313|EMBL:JAB07992.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051974}  [Source:UniProtKB/TrEMBL;Acc:F6ZDK8]
ENSCJAG00000034579	NOVEL	pseudogene	ENSCJAG00000034579	chromosome:C_jacchus3.2.1:4:1:171630274:1	81120504	81120880	R	<no descrition>
ENSCJAG00000032329	NOVEL	protein_coding	ENSCJAG00000032329	chromosome:C_jacchus3.2.1:4:1:171630274:1	81222630	81224763	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048595}  [Source:UniProtKB/TrEMBL;Acc:F7EVM3]
ENSCJAG00000013154	KNOWN	protein_coding	CD53	chromosome:C_jacchus3.2.1:7:1:155834243:1	146777432	146803493	D	Leukocyte surface antigen CD53 {ECO:0000313|EMBL:JAB20678.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044024}  [Source:UniProtKB/TrEMBL;Acc:F7HHL3]
ENSCJAG00000009395	KNOWN	protein_coding	UBE3D	chromosome:C_jacchus3.2.1:4:1:171630274:1	81534093	81746668	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017221}  [Source:UniProtKB/TrEMBL;Acc:F7I0U1]
ENSCJAG00000001392	KNOWN_BY_PROJECTION	protein_coding	DDX19A	chromosome:C_jacchus3.2.1:9:1:124281992:1	111893030	111894048	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A [Source:HGNC Symbol;Acc:HGNC:25628]
ENSCJAG00000001398	NOVEL	pseudogene	ENSCJAG00000001398	chromosome:C_jacchus3.2.1:9:1:124281992:1	111958997	111959681	R	<no descrition>
ENSCJAG00000020096	KNOWN_BY_PROJECTION	protein_coding	CHEK2	chromosome:C_jacchus3.2.1:1:1:210400635:1	191611515	191663933	R	checkpoint kinase 2 [Source:HGNC Symbol;Acc:HGNC:16627]
ENSCJAG00000033027	NOVEL	protein_coding	ENSCJAG00000033027	chromosome:C_jacchus3.2.1:10:1:132174527:1	52770140	52770767	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042904}  [Source:UniProtKB/TrEMBL;Acc:F6XDP1]
ENSCJAG00000035022	NOVEL	protein_coding	ENSCJAG00000035022	chromosome:C_jacchus3.2.1:10:1:132174527:1	52791470	52792187	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052121}  [Source:UniProtKB/TrEMBL;Acc:F7I2P9]
ENSCJAG00000033013	NOVEL	protein_coding	ENSCJAG00000033013	chromosome:C_jacchus3.2.1:2:1:204313951:1	48709939	48719405	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046293}  [Source:UniProtKB/TrEMBL;Acc:F7ASF9]
ENSCJAG00000015512	KNOWN	protein_coding	CCDC69	chromosome:C_jacchus3.2.1:2:1:204313951:1	48725244	48774104	R	Coiled-coil domain-containing protein 69 {ECO:0000313|EMBL:JAB11069.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028559}  [Source:UniProtKB/TrEMBL;Acc:F7A4I7]
ENSCJAG00000006180	KNOWN_BY_PROJECTION	protein_coding	PRKD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	53658713	53818043	R	protein kinase D1 [Source:HGNC Symbol;Acc:HGNC:9407]
ENSCJAG00000015524	KNOWN	protein_coding	GM2A	chromosome:C_jacchus3.2.1:2:1:204313951:1	48804462	48822039	D	Ganglioside GM2 activator isoform 1 {ECO:0000313|EMBL:JAB11262.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028593}  [Source:UniProtKB/TrEMBL;Acc:F6Z490]
ENSCJAG00000006106	KNOWN_BY_PROJECTION	protein_coding	G2E3	chromosome:C_jacchus3.2.1:10:1:132174527:1	54789660	54844602	D	G2/M-phase specific E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:20338]
ENSCJAG00000015538	KNOWN_BY_PROJECTION	protein_coding	SLC36A3	chromosome:C_jacchus3.2.1:2:1:204313951:1	48831519	48858390	R	solute carrier family 36, member 3 [Source:HGNC Symbol;Acc:HGNC:19659]
ENSCJAG00000013162	KNOWN_BY_PROJECTION	protein_coding	LRIF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	146865705	146881801	R	ligand dependent nuclear receptor interacting factor 1 [Source:HGNC Symbol;Acc:HGNC:30299]
ENSCJAG00000013164	KNOWN	protein_coding	DRAM2	chromosome:C_jacchus3.2.1:7:1:155834243:1	147054526	147079677	R	DNA damage-regulated autophagy modulator protein 2 {ECO:0000313|EMBL:JAB03005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024206}  [Source:UniProtKB/TrEMBL;Acc:F7GN83]
ENSCJAG00000001404	KNOWN	protein_coding	P2RX7	chromosome:C_jacchus3.2.1:9:1:124281992:1	111999572	112052821	D	P2X purinoceptor {ECO:0000256|RuleBase:RU000681}  [Source:UniProtKB/TrEMBL;Acc:F7HRX1]
ENSCJAG00000016334	KNOWN_BY_PROJECTION	protein_coding	TRIP10	chromosome:C_jacchus3.2.1:22:1:49145316:1	6447122	6461785	D	thyroid hormone receptor interactor 10 [Source:HGNC Symbol;Acc:HGNC:12304]
ENSCJAG00000015624	KNOWN_BY_PROJECTION	protein_coding	SLC36A2	chromosome:C_jacchus3.2.1:2:1:204313951:1	48871091	48912815	R	solute carrier family 36 (proton/amino acid symporter), member 2 [Source:HGNC Symbol;Acc:HGNC:18762]
ENSCJAG00000019492	NOVEL	protein_coding	ENSCJAG00000019492	chromosome:C_jacchus3.2.1:7:1:155834243:1	15046269	15047551	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050165}  [Source:UniProtKB/TrEMBL;Acc:F7H477]
ENSCJAG00000018448	KNOWN	protein_coding	SPAG9	chromosome:C_jacchus3.2.1:5:1:159171411:1	106454773	106604458	D	C-Jun-amino-terminal kinase-interacting protein 4 isoform 4 {ECO:0000313|EMBL:JAB21209.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046127}  [Source:UniProtKB/TrEMBL;Acc:F6X095]
ENSCJAG00000008685	KNOWN_BY_PROJECTION	protein_coding	ST8SIA6	chromosome:C_jacchus3.2.1:7:1:155834243:1	15153327	15224984	R	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23317]
ENSCJAG00000015590	KNOWN	protein_coding	SLC36A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	49076017	49140898	D	Proton-coupled amino acid transporter 1 {ECO:0000313|EMBL:JAB04494.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028741}  [Source:UniProtKB/TrEMBL;Acc:F7AL12]
ENSCJAG00000008663	KNOWN_BY_PROJECTION	protein_coding	PTPLA	chromosome:C_jacchus3.2.1:7:1:155834243:1	15415595	15441102	R	protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A [Source:HGNC Symbol;Acc:HGNC:9639]
ENSCJAG00000008590	KNOWN	protein_coding	STAM	chromosome:C_jacchus3.2.1:7:1:155834243:1	15452370	15526713	D	Signal transducing adapter molecule 1 {ECO:0000313|EMBL:JAB08059.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015931}  [Source:UniProtKB/TrEMBL;Acc:F7E7C6]
ENSCJAG00000013188	KNOWN	protein_coding	CEPT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	147079083	147125398	D	Choline/ethanolaminephosphotransferase 1 {ECO:0000313|EMBL:JAB05152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024240}  [Source:UniProtKB/TrEMBL;Acc:F7G2A6]
ENSCJAG00000009155	KNOWN	protein_coding	DOPEY1	chromosome:C_jacchus3.2.1:4:1:171630274:1	81749065	81849263	D	Protein dopey-1 isoform a {ECO:0000313|EMBL:JAB32139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017174}  [Source:UniProtKB/TrEMBL;Acc:F7IA99]
ENSCJAG00000001838	KNOWN_BY_PROJECTION	protein_coding	IDUA	chromosome:C_jacchus3.2.1:3:1:190850796:1	189927240	189942677	R	iduronidase, alpha-L- [Source:HGNC Symbol;Acc:HGNC:5391]
ENSCJAG00000001864	KNOWN_BY_PROJECTION	protein_coding	SLC26A1	chromosome:C_jacchus3.2.1:3:1:190850796:1	189936542	189942067	D	solute carrier family 26 (anion exchanger), member 1 [Source:HGNC Symbol;Acc:HGNC:10993]
ENSCJAG00000008561	KNOWN_BY_PROJECTION	protein_coding	TMEM236	chromosome:C_jacchus3.2.1:7:1:155834243:1	15560491	15612243	D	transmembrane protein 236 [Source:HGNC Symbol;Acc:HGNC:23473]
ENSCJAG00000015562	KNOWN_BY_PROJECTION	protein_coding	FAT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	49154543	49369820	R	FAT atypical cadherin 2 [Source:HGNC Symbol;Acc:HGNC:3596]
ENSCJAG00000001866	KNOWN_BY_PROJECTION	protein_coding	DGKQ	chromosome:C_jacchus3.2.1:3:1:190850796:1	189956818	189969868	D	diacylglycerol kinase, theta 110kDa [Source:HGNC Symbol;Acc:HGNC:2856]
ENSCJAG00000013204	KNOWN_BY_PROJECTION	protein_coding	DENND2D	chromosome:C_jacchus3.2.1:7:1:155834243:1	147137063	147151460	R	DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
ENSCJAG00000036290	KNOWN	protein_coding	SH2D3A	chromosome:C_jacchus3.2.1:22:1:49145316:1	6462869	6477759	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030061}  [Source:UniProtKB/TrEMBL;Acc:F6RT49]
ENSCJAG00000022638	KNOWN	protein_coding	GPR34	chromosome:C_jacchus3.2.1:X:1:142054208:1	40551374	40560918	D	G-protein-coupled receptor GPR34 {ECO:0000313|EMBL:AAP04277.1}; Putative G-protein coupled receptor 34 {ECO:0000313|EMBL:JAB22569.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041237}  [Source:UniProtKB/TrEMBL;Acc:Q6XCG2]
ENSCJAG00000008479	KNOWN_BY_PROJECTION	protein_coding	MRC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	15622095	15728475	D	mannose receptor, C type 1 [Source:HGNC Symbol;Acc:HGNC:7228]
ENSCJAG00000009032	KNOWN_BY_PROJECTION	protein_coding	GPR82	chromosome:C_jacchus3.2.1:X:1:142054208:1	40596711	40601056	D	G protein-coupled receptor 82 [Source:HGNC Symbol;Acc:HGNC:4533]
ENSCJAG00000033189	NOVEL	protein_coding	ENSCJAG00000033189	chromosome:C_jacchus3.2.1:X:1:142054208:1	41743929	41745196	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052030}  [Source:UniProtKB/TrEMBL;Acc:F7IJA1]
ENSCJAG00000009665	KNOWN	protein_coding	MOBP	chromosome:C_jacchus3.2.1:17:1:74750902:1	69937570	69986573	D	Myelin-associated oligodendrocyte basic protein {ECO:0000313|EMBL:JAB15293.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017714}  [Source:UniProtKB/TrEMBL;Acc:F7IC80]
ENSCJAG00000016187	KNOWN_BY_PROJECTION	protein_coding	EMR1	chromosome:C_jacchus3.2.1:22:1:49145316:1	6600946	6646009	D	egf-like module containing, mucin-like, hormone receptor-like 1 [Source:HGNC Symbol;Acc:HGNC:3336]
ENSCJAG00000009662	NOVEL	pseudogene	ENSCJAG00000009662	chromosome:C_jacchus3.2.1:17:1:74750902:1	70204688	70205046	D	<no descrition>
ENSCJAG00000013226	KNOWN_BY_PROJECTION	protein_coding	CHI3L2	chromosome:C_jacchus3.2.1:7:1:155834243:1	147182191	147197649	D	chitinase 3-like 2 [Source:HGNC Symbol;Acc:HGNC:1933]
ENSCJAG00000015556	NOVEL	protein_coding	ENSCJAG00000015556	chromosome:C_jacchus3.2.1:2:1:204313951:1	49267680	49272708	D	<no descrition>
ENSCJAG00000016161	NOVEL	protein_coding	ENSCJAG00000016161	chromosome:C_jacchus3.2.1:22:1:49145316:1	6670839	6705863	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029766}  [Source:UniProtKB/TrEMBL;Acc:F7I561]
ENSCJAG00000015545	KNOWN_BY_PROJECTION	protein_coding	CLEC4G	chromosome:C_jacchus3.2.1:2:1:204313951:1	49322339	49325757	D	C-type lectin domain family 4, member G [Source:HGNC Symbol;Acc:HGNC:24591]
ENSCJAG00000010757	KNOWN_BY_PROJECTION	protein_coding	MAOA	chromosome:C_jacchus3.2.1:X:1:142054208:1	42628013	42697656	D	monoamine oxidase A [Source:HGNC Symbol;Acc:HGNC:6833]
ENSCJAG00000013268	NOVEL	protein_coding	ENSCJAG00000013268	chromosome:C_jacchus3.2.1:7:1:155834243:1	147241967	147247725	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024370}  [Source:UniProtKB/TrEMBL;Acc:F7GT32]
ENSCJAG00000020051	KNOWN_BY_PROJECTION	protein_coding	HSCB	chromosome:C_jacchus3.2.1:1:1:210400635:1	191664179	191679164	D	HscB mitochondrial iron-sulfur cluster co-chaperone [Source:HGNC Symbol;Acc:HGNC:28913]
ENSCJAG00000009611	KNOWN	protein_coding	MYRIP	chromosome:C_jacchus3.2.1:17:1:74750902:1	70250960	70686680	D	Rab effector MyRIP {ECO:0000313|EMBL:JAB25055.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009473}  [Source:UniProtKB/TrEMBL;Acc:F7F8B2]
ENSCJAG00000015518	KNOWN_BY_PROJECTION	protein_coding	SPARC	chromosome:C_jacchus3.2.1:2:1:204313951:1	49372643	49386853	R	secreted protein, acidic, cysteine-rich (osteonectin) [Source:HGNC Symbol;Acc:HGNC:11219]
ENSCJAG00000001891	NOVEL	protein_coding	ENSCJAG00000001891	chromosome:C_jacchus3.2.1:3:1:190850796:1	189971673	189990270	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043644}  [Source:UniProtKB/TrEMBL;Acc:F7IA25]
ENSCJAG00000020088	KNOWN	protein_coding	CCDC117	chromosome:C_jacchus3.2.1:1:1:210400635:1	191701184	191714266	D	Coiled-coil domain-containing protein 117 {ECO:0000313|EMBL:JAB10313.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044437}  [Source:UniProtKB/TrEMBL;Acc:F7D147]
ENSCJAG00000001896	KNOWN_BY_PROJECTION	protein_coding	GAK	chromosome:C_jacchus3.2.1:3:1:190850796:1	190022666	190101385	D	cyclin G associated kinase [Source:HGNC Symbol;Acc:HGNC:4113]
ENSCJAG00000013278	KNOWN_BY_PROJECTION	protein_coding	CHIA	chromosome:C_jacchus3.2.1:7:1:155834243:1	147268718	147286661	D	chitinase, acidic [Source:HGNC Symbol;Acc:HGNC:17432]
ENSCJAG00000017860	KNOWN	protein_coding	EIF1B	chromosome:C_jacchus3.2.1:17:1:74750902:1	70731231	70733967	D	Eukaryotic translation initiation factor 1b {ECO:0000313|EMBL:JAB01957.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032975}  [Source:UniProtKB/TrEMBL;Acc:F7G7W3]
ENSCJAG00000013286	KNOWN	protein_coding	PIFO	chromosome:C_jacchus3.2.1:7:1:155834243:1	147321314	147326366	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024405}  [Source:UniProtKB/TrEMBL;Acc:F7FNY3]
ENSCJAG00000017875	KNOWN_BY_PROJECTION	protein_coding	ENTPD3	chromosome:C_jacchus3.2.1:17:1:74750902:1	70830913	70852548	D	ectonucleoside triphosphate diphosphohydrolase 3 [Source:HGNC Symbol;Acc:HGNC:3365]
ENSCJAG00000001438	KNOWN_BY_PROJECTION	protein_coding	FGFR2	chromosome:C_jacchus3.2.1:12:1:121768101:1	109419994	109506526	R	fibroblast growth factor receptor 2 [Source:HGNC Symbol;Acc:HGNC:3689]
ENSCJAG00000017884	KNOWN_BY_PROJECTION	protein_coding	RPL14	chromosome:C_jacchus3.2.1:17:1:74750902:1	70874975	70879791	D	ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
ENSCJAG00000008439	KNOWN_BY_PROJECTION	protein_coding	SLC39A12	chromosome:C_jacchus3.2.1:7:1:155834243:1	15813401	15889491	D	solute carrier family 39 (zinc transporter), member 12 [Source:HGNC Symbol;Acc:HGNC:20860]
ENSCJAG00000013301	KNOWN_BY_PROJECTION	protein_coding	OVGP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	147370652	147384570	R	oviductal glycoprotein 1, 120kDa [Source:HGNC Symbol;Acc:HGNC:8524]
ENSCJAG00000017904	NOVEL	protein_coding	ENSCJAG00000017904	chromosome:C_jacchus3.2.1:17:1:74750902:1	70909657	70933685	D	<no descrition>
ENSCJAG00000001941	NOVEL	protein_coding	ENSCJAG00000001941	chromosome:C_jacchus3.2.1:3:1:190850796:1	190158310	190165070	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003507}  [Source:UniProtKB/TrEMBL;Acc:F7F137]
ENSCJAG00000017911	NOVEL	pseudogene	ENSCJAG00000017911	chromosome:C_jacchus3.2.1:17:1:74750902:1	70978599	70979461	R	<no descrition>
ENSCJAG00000017916	NOVEL	protein_coding	ENSCJAG00000017916	chromosome:C_jacchus3.2.1:17:1:74750902:1	70992092	70992929	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033069}  [Source:UniProtKB/TrEMBL;Acc:F6TU98]
ENSCJAG00000020084	KNOWN_BY_PROJECTION	protein_coding	XBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	191722170	191729230	R	X-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12801]
ENSCJAG00000015505	KNOWN	protein_coding	ATOX1	chromosome:C_jacchus3.2.1:2:1:204313951:1	49454014	49470422	R	Copper transport protein ATOX1 {ECO:0000313|EMBL:JAB23150.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028555}  [Source:UniProtKB/TrEMBL;Acc:F7A4N0]
ENSCJAG00000005938	KNOWN_BY_PROJECTION	protein_coding	SCFD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	54850147	54969899	D	sec1 family domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20726]
ENSCJAG00000020083	NOVEL	pseudogene	ENSCJAG00000020083	chromosome:C_jacchus3.2.1:1:1:210400635:1	191785967	191786504	R	<no descrition>
ENSCJAG00000001411	KNOWN	protein_coding	ATE1	chromosome:C_jacchus3.2.1:12:1:121768101:1	109540742	109855190	R	Arginyl-tRNA--protein transferase 1 {ECO:0000256|PIRNR:PIRNR037207}  [Source:UniProtKB/TrEMBL;Acc:F7HJ75]
ENSCJAG00000017918	KNOWN	protein_coding	CTNNB1	chromosome:C_jacchus3.2.1:17:1:74750902:1	71627164	71672826	D	Catenin beta-1 {ECO:0000313|EMBL:JAB10633.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033154}  [Source:UniProtKB/TrEMBL;Acc:F6SAX7]
ENSCJAG00000015407	KNOWN	protein_coding	G3BP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	49475172	49504444	D	Ras GTPase-activating protein-binding protein 1 {ECO:0000313|EMBL:JAB10870.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028538}  [Source:UniProtKB/TrEMBL;Acc:F7AMV9]
ENSCJAG00000020059	KNOWN_BY_PROJECTION	protein_coding	ZNRF3	chromosome:C_jacchus3.2.1:1:1:210400635:1	191832691	191967926	D	zinc and ring finger 3 [Source:HGNC Symbol;Acc:HGNC:18126]
ENSCJAG00000001960	KNOWN	protein_coding	PCGF3	chromosome:C_jacchus3.2.1:3:1:190850796:1	190184099	190255224	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003563}  [Source:UniProtKB/TrEMBL;Acc:F7ELG4]
ENSCJAG00000018533	KNOWN	protein_coding	TOB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	106698496	106703465	D	Protein Tob1 isoform 1 {ECO:0000313|EMBL:JAB43249.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036086}  [Source:UniProtKB/TrEMBL;Acc:F7FBT1]
ENSCJAG00000034659	NOVEL	protein_coding	ENSCJAG00000034659	chromosome:C_jacchus3.2.1:5:1:159171411:1	106718606	106719802	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052429}  [Source:UniProtKB/TrEMBL;Acc:F7I782]
ENSCJAG00000013344	KNOWN	protein_coding	WDR77	chromosome:C_jacchus3.2.1:7:1:155834243:1	147398126	147407430	R	Methylosome protein 50 {ECO:0000313|EMBL:JAB07941.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024515}  [Source:UniProtKB/TrEMBL;Acc:F7GXV3]
ENSCJAG00000010763	KNOWN	protein_coding	MAOB	chromosome:C_jacchus3.2.1:X:1:142054208:1	42713016	42827292	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043756}  [Source:UniProtKB/TrEMBL;Acc:F7IRJ7]
ENSCJAG00000035232	KNOWN_BY_PROJECTION	protein_coding	WFIKKN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	106724630	106732311	R	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30916]
ENSCJAG00000013353	KNOWN	protein_coding	ENSCJAG00000013353	chromosome:C_jacchus3.2.1:7:1:155834243:1	147407297	147420123	D	ATP synthase subunit b, mitochondrial {ECO:0000313|EMBL:JAB16888.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024560}  [Source:UniProtKB/TrEMBL;Acc:F7GCT3]
ENSCJAG00000017962	NOVEL	pseudogene	ENSCJAG00000017962	chromosome:C_jacchus3.2.1:17:1:74750902:1	71823980	71824561	R	<no descrition>
ENSCJAG00000033929	NOVEL	protein_coding	ENSCJAG00000033929	chromosome:C_jacchus3.2.1:5:1:159171411:1	106796649	106799847	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042649}  [Source:UniProtKB/TrEMBL;Acc:F7A5Z9]
ENSCJAG00000017964	KNOWN_BY_PROJECTION	protein_coding	ULK4	chromosome:C_jacchus3.2.1:17:1:74750902:1	72137232	72346905	R	unc-51 like kinase 4 [Source:HGNC Symbol;Acc:HGNC:15784]
ENSCJAG00000016144	NOVEL	protein_coding	ENSCJAG00000016144	chromosome:C_jacchus3.2.1:22:1:49145316:1	6745665	6748189	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029719}  [Source:UniProtKB/TrEMBL;Acc:F7I9X4]
ENSCJAG00000001975	KNOWN_BY_PROJECTION	protein_coding	MFSD7	chromosome:C_jacchus3.2.1:3:1:190850796:1	190283070	190321997	D	major facilitator superfamily domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26177]
ENSCJAG00000015379	KNOWN_BY_PROJECTION	protein_coding	GLRA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	49522396	49629841	R	glycine receptor, alpha 1 [Source:HGNC Symbol;Acc:HGNC:4326]
ENSCJAG00000016134	KNOWN_BY_PROJECTION	protein_coding	ZNF557	chromosome:C_jacchus3.2.1:22:1:49145316:1	6755603	6780047	D	zinc finger protein 557 [Source:HGNC Symbol;Acc:HGNC:28632]
ENSCJAG00000001984	KNOWN_BY_PROJECTION	protein_coding	MYL5	chromosome:C_jacchus3.2.1:3:1:190850796:1	190286021	190294093	R	myosin, light chain 5, regulatory [Source:HGNC Symbol;Acc:HGNC:7586]
ENSCJAG00000008292	KNOWN	protein_coding	CACNB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	16101810	16387366	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015504}; Voltage-dependent L-type calcium channel subunit beta-2 isoform 1 {ECO:0000313|EMBL:JAB30053.1}  [Source:UniProtKB/TrEMBL;Acc:F7F0U5]
ENSCJAG00000001436	KNOWN	protein_coding	P2RX4	chromosome:C_jacchus3.2.1:9:1:124281992:1	112087538	112103933	D	P2X purinoceptor {ECO:0000256|RuleBase:RU000681}  [Source:UniProtKB/TrEMBL;Acc:F7IL09]
ENSCJAG00000016111	NOVEL	protein_coding	ENSCJAG00000016111	chromosome:C_jacchus3.2.1:22:1:49145316:1	6830271	6848613	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029678}  [Source:UniProtKB/TrEMBL;Acc:F7IP15]
ENSCJAG00000013381	KNOWN_BY_PROJECTION	protein_coding	C1orf162	chromosome:C_jacchus3.2.1:7:1:155834243:1	147436042	147438433	D	chromosome 1 open reading frame 162 [Source:HGNC Symbol;Acc:HGNC:28344]
ENSCJAG00000001989	NOVEL	protein_coding	ENSCJAG00000001989	chromosome:C_jacchus3.2.1:3:1:190850796:1	190294241	190296129	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003585}  [Source:UniProtKB/TrEMBL;Acc:F7DUM0]
ENSCJAG00000016091	KNOWN_BY_PROJECTION	protein_coding	INSR	chromosome:C_jacchus3.2.1:22:1:49145316:1	6889484	7057297	R	insulin receptor [Source:HGNC Symbol;Acc:HGNC:6091]
ENSCJAG00000013385	KNOWN_BY_PROJECTION	protein_coding	ADORA3	chromosome:C_jacchus3.2.1:7:1:155834243:1	147444402	147535398	R	adenosine A3 receptor [Source:HGNC Symbol;Acc:HGNC:268]
ENSCJAG00000018558	KNOWN	protein_coding	LUC7L3	chromosome:C_jacchus3.2.1:5:1:159171411:1	106806315	106839356	R	Luc7-like protein 3 {ECO:0000313|EMBL:JAB11356.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034545}  [Source:UniProtKB/TrEMBL;Acc:F7I8H3]
ENSCJAG00000008391	NOVEL	protein_coding	ENSCJAG00000008391	chromosome:C_jacchus3.2.1:22:1:49145316:1	7094252	7113582	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047406}  [Source:UniProtKB/TrEMBL;Acc:F7IMW2]
ENSCJAG00000001990	KNOWN_BY_PROJECTION	protein_coding	PDE6B	chromosome:C_jacchus3.2.1:3:1:190850796:1	190298895	190360354	R	phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
ENSCJAG00000013392	KNOWN	protein_coding	RAP1A	chromosome:C_jacchus3.2.1:7:1:155834243:1	147595478	147686396	D	Ras-related protein Rap-1A {ECO:0000313|EMBL:JAB04574.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024645}  [Source:UniProtKB/TrEMBL;Acc:F6PNM5]
ENSCJAG00000008397	NOVEL	protein_coding	ENSCJAG00000008397	chromosome:C_jacchus3.2.1:22:1:49145316:1	7178581	7210784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024763}  [Source:UniProtKB/TrEMBL;Acc:F6R533]
ENSCJAG00000020058	KNOWN_BY_PROJECTION	protein_coding	C22orf31	chromosome:C_jacchus3.2.1:1:1:210400635:1	191972846	191975922	R	chromosome 22 open reading frame 31 [Source:HGNC Symbol;Acc:HGNC:26931]
ENSCJAG00000004739	KNOWN_BY_PROJECTION	protein_coding	NMUR2	chromosome:C_jacchus3.2.1:2:1:204313951:1	50145265	50159451	R	neuromedin U receptor 2 [Source:HGNC Symbol;Acc:HGNC:16454]
ENSCJAG00000020057	KNOWN	protein_coding	KREMEN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	191986742	192053693	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037297}  [Source:UniProtKB/TrEMBL;Acc:F6UAY1]
ENSCJAG00000008402	KNOWN_BY_PROJECTION	protein_coding	PEX11G	chromosome:C_jacchus3.2.1:22:1:49145316:1	7216352	7227981	R	peroxisomal biogenesis factor 11 gamma [Source:HGNC Symbol;Acc:HGNC:20208]
ENSCJAG00000008413	KNOWN_BY_PROJECTION	protein_coding	C19orf45	chromosome:C_jacchus3.2.1:22:1:49145316:1	7239790	7356207	D	chromosome 19 open reading frame 45 [Source:HGNC Symbol;Acc:HGNC:24745]
ENSCJAG00000017993	KNOWN_BY_PROJECTION	protein_coding	TRAK1	chromosome:C_jacchus3.2.1:17:1:74750902:1	72485063	72623386	D	trafficking protein, kinesin binding 1 [Source:HGNC Symbol;Acc:HGNC:29947]
ENSCJAG00000008423	KNOWN_BY_PROJECTION	protein_coding	ZNF358	chromosome:C_jacchus3.2.1:22:1:49145316:1	7258133	7260800	D	zinc finger protein 358 [Source:HGNC Symbol;Acc:HGNC:16838]
ENSCJAG00000020041	KNOWN	protein_coding	EMID1	chromosome:C_jacchus3.2.1:1:1:210400635:1	192101642	192155923	D	EMI domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB06524.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037283}  [Source:UniProtKB/TrEMBL;Acc:F6UWB5]
ENSCJAG00000036638	KNOWN	protein_coding	TRAPPC5	chromosome:C_jacchus3.2.1:22:1:49145316:1	7259814	7433677	D	Trafficking protein particle complex subunit 5 {ECO:0000313|EMBL:JAB11582.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016017}  [Source:UniProtKB/TrEMBL;Acc:F6Y729]
ENSCJAG00000008429	KNOWN_BY_PROJECTION	protein_coding	MCOLN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	7262574	7277177	D	mucolipin 1 [Source:HGNC Symbol;Acc:HGNC:13356]
ENSCJAG00000018627	KNOWN	protein_coding	ANKRD40	chromosome:C_jacchus3.2.1:5:1:159171411:1	106864031	106877941	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034613}  [Source:UniProtKB/TrEMBL;Acc:F7HTU9]
ENSCJAG00000020040	KNOWN	protein_coding	RHBDD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	192156205	192162491	R	Rhomboid domain-containing protein 3 {ECO:0000313|EMBL:JAB04093.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037268}  [Source:UniProtKB/TrEMBL;Acc:F6VHH2]
ENSCJAG00000018017	KNOWN	protein_coding	CCK	chromosome:C_jacchus3.2.1:17:1:74750902:1	72650448	72658743	R	Cholecystokinin preproprotein {ECO:0000313|EMBL:JAB12220.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033275}  [Source:UniProtKB/TrEMBL;Acc:F6QGZ9]
ENSCJAG00000001450	KNOWN	protein_coding	CAMKK2	chromosome:C_jacchus3.2.1:9:1:124281992:1	112109436	112175617	R	Calcium/calmodulin-dependent protein kinase kinase 2 isoform 2 {ECO:0000313|EMBL:JAB04608.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002647}  [Source:UniProtKB/TrEMBL;Acc:F7I4F8]
ENSCJAG00000018609	KNOWN_BY_PROJECTION	protein_coding	ABCC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	106881719	106940415	R	ATP-binding cassette, sub-family C (CFTR/MRP), member 3 [Source:HGNC Symbol;Acc:HGNC:54]
ENSCJAG00000004624	KNOWN_BY_PROJECTION	protein_coding	GRIA1	chromosome:C_jacchus3.2.1:2:1:204313951:1	51242147	51612701	D	glutamate receptor, ionotropic, AMPA 1 [Source:HGNC Symbol;Acc:HGNC:4571]
ENSCJAG00000009086	KNOWN_BY_PROJECTION	protein_coding	PGM3	chromosome:C_jacchus3.2.1:4:1:171630274:1	81849761	81876785	R	phosphoglucomutase 3 [Source:HGNC Symbol;Acc:HGNC:8907]
ENSCJAG00000018020	KNOWN_BY_PROJECTION	protein_coding	LYZL4	chromosome:C_jacchus3.2.1:17:1:74750902:1	72784283	72795077	R	lysozyme-like 4 [Source:HGNC Symbol;Acc:HGNC:28387]
ENSCJAG00000018021	NOVEL	protein_coding	ENSCJAG00000018021	chromosome:C_jacchus3.2.1:17:1:74750902:1	72844079	72846343	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033296}  [Source:UniProtKB/TrEMBL;Acc:F6QFZ3]
ENSCJAG00000001386	KNOWN	protein_coding	NSMCE4A	chromosome:C_jacchus3.2.1:12:1:121768101:1	109881041	109897944	R	Non-structural maintenance of chromosomes element 4 homolog A isoform 1 {ECO:0000313|EMBL:JAB10117.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002482}  [Source:UniProtKB/TrEMBL;Acc:F7HV70]
ENSCJAG00000018028	KNOWN_BY_PROJECTION	protein_coding	VIPR1	chromosome:C_jacchus3.2.1:17:1:74750902:1	72900990	72934060	D	vasoactive intestinal peptide receptor 1 [Source:HGNC Symbol;Acc:HGNC:12694]
ENSCJAG00000019987	KNOWN	protein_coding	EWSR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	192162575	192194890	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037266}  [Source:UniProtKB/TrEMBL;Acc:F6VHI7]
ENSCJAG00000037780	KNOWN_BY_PROJECTION	protein_coding	PNPLA6	chromosome:C_jacchus3.2.1:22:1:49145316:1	7277858	7307251	D	patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
ENSCJAG00000010835	KNOWN	protein_coding	NDP	chromosome:C_jacchus3.2.1:X:1:142054208:1	42897048	42923920	R	Norrin {ECO:0000313|EMBL:JAB22403.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019960}  [Source:UniProtKB/TrEMBL;Acc:F6Z859]
ENSCJAG00000034390	NOVEL	pseudogene	ENSCJAG00000034390	chromosome:C_jacchus3.2.1:7:1:155834243:1	147624451	147624949	R	<no descrition>
ENSCJAG00000032542	NOVEL	protein_coding	ENSCJAG00000032542	chromosome:C_jacchus3.2.1:X:1:142054208:1	43026529	43027467	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049859}  [Source:UniProtKB/TrEMBL;Acc:F6YV13]
ENSCJAG00000013425	KNOWN	protein_coding	FAM212B	chromosome:C_jacchus3.2.1:7:1:155834243:1	147695014	147727918	R	Protein FAM212B isoform 1 {ECO:0000313|EMBL:JAB02697.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024648}  [Source:UniProtKB/TrEMBL;Acc:F6U9N5]
ENSCJAG00000010837	KNOWN_BY_PROJECTION	protein_coding	EFHC2	chromosome:C_jacchus3.2.1:X:1:142054208:1	43107753	43272283	R	EF-hand domain (C-terminal) containing 2 [Source:HGNC Symbol;Acc:HGNC:26233]
ENSCJAG00000009077	KNOWN	protein_coding	RWDD2A	chromosome:C_jacchus3.2.1:4:1:171630274:1	81876185	81879501	D	RWD domain-containing protein 2A {ECO:0000313|EMBL:JAB01636.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016642}  [Source:UniProtKB/TrEMBL;Acc:F6XCR6]
ENSCJAG00000013428	KNOWN	protein_coding	DDX20	chromosome:C_jacchus3.2.1:7:1:155834243:1	147727681	147740815	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024682}  [Source:UniProtKB/TrEMBL;Acc:F6TBJ9]
ENSCJAG00000009064	KNOWN	protein_coding	ME1	chromosome:C_jacchus3.2.1:4:1:171630274:1	81899621	82157912	R	Malic enzyme {ECO:0000256|RuleBase:RU003426}  [Source:UniProtKB/TrEMBL;Acc:F7H233]
ENSCJAG00000008427	KNOWN_BY_PROJECTION	protein_coding	NSUN6	chromosome:C_jacchus3.2.1:7:1:155834243:1	16392838	16440962	R	NOP2/Sun domain family, member 6 [Source:HGNC Symbol;Acc:HGNC:23529]
ENSCJAG00000013456	KNOWN_BY_PROJECTION	protein_coding	KCND3	chromosome:C_jacchus3.2.1:7:1:155834243:1	147965896	147968551	R	potassium channel, voltage gated Shal related subfamily D, member 3 [Source:HGNC Symbol;Acc:HGNC:6239]
ENSCJAG00000008278	KNOWN_BY_PROJECTION	protein_coding	ARL5B	chromosome:C_jacchus3.2.1:7:1:155834243:1	16447930	16476472	D	ADP-ribosylation factor-like 5B [Source:HGNC Symbol;Acc:HGNC:23052]
ENSCJAG00000008533	KNOWN_BY_PROJECTION	protein_coding	CAMSAP3	chromosome:C_jacchus3.2.1:22:1:49145316:1	7355304	7367946	D	calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
ENSCJAG00000004622	NOVEL	pseudogene	ENSCJAG00000004622	chromosome:C_jacchus3.2.1:2:1:204313951:1	51705166	51705914	R	<no descrition>
ENSCJAG00000022127	NOVEL	protein_coding	ENSCJAG00000022127	chromosome:C_jacchus3.2.1:7:1:155834243:1	16453885	16454483	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040786}  [Source:UniProtKB/TrEMBL;Acc:F7IQS3]
ENSCJAG00000015124	KNOWN_BY_PROJECTION	protein_coding	PRSS35	chromosome:C_jacchus3.2.1:4:1:171630274:1	82235462	82247355	D	protease, serine, 35 [Source:HGNC Symbol;Acc:HGNC:21387]
ENSCJAG00000008275	NOVEL	protein_coding	ENSCJAG00000008275	chromosome:C_jacchus3.2.1:7:1:155834243:1	16817100	16887223	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015275}  [Source:UniProtKB/TrEMBL;Acc:F7FU23]
ENSCJAG00000008267	NOVEL	protein_coding	ENSCJAG00000008267	chromosome:C_jacchus3.2.1:7:1:155834243:1	16952429	17454699	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043295}  [Source:UniProtKB/TrEMBL;Acc:F7I809]
ENSCJAG00000001289	KNOWN	protein_coding	TACC2	chromosome:C_jacchus3.2.1:12:1:121768101:1	109942714	110168056	D	Transforming acidic coiled-coil-containing protein 2 isoform c {ECO:0000313|EMBL:JAB20150.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002396}  [Source:UniProtKB/TrEMBL;Acc:F7IBP6]
ENSCJAG00000004547	KNOWN	protein_coding	FAM114A2	chromosome:C_jacchus3.2.1:2:1:204313951:1	51925425	51971944	R	Protein FAM114A2 {ECO:0000313|EMBL:JAB07164.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008338}  [Source:UniProtKB/TrEMBL;Acc:F7HWM9]
ENSCJAG00000008238	KNOWN	protein_coding	PLXDC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	17541369	17990874	D	Plexin domain-containing protein 2 {ECO:0000313|EMBL:JAB24917.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015256}  [Source:UniProtKB/TrEMBL;Acc:F7GHE6]
ENSCJAG00000015128	KNOWN_BY_PROJECTION	protein_coding	SNAP91	chromosome:C_jacchus3.2.1:4:1:171630274:1	82269113	82425186	R	synaptosomal-associated protein, 91kDa [Source:HGNC Symbol;Acc:HGNC:14986]
ENSCJAG00000018639	KNOWN	protein_coding	CACNA1G	chromosome:C_jacchus3.2.1:5:1:159171411:1	106947820	107003418	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034731}  [Source:UniProtKB/TrEMBL;Acc:F7IAQ0]
ENSCJAG00000008568	KNOWN_BY_PROJECTION	protein_coding	XAB2	chromosome:C_jacchus3.2.1:22:1:49145316:1	7369056	7383001	R	XPA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14089]
ENSCJAG00000008182	KNOWN	protein_coding	NEBL	chromosome:C_jacchus3.2.1:7:1:155834243:1	18444170	18815316	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015144}  [Source:UniProtKB/TrEMBL;Acc:F7CX41]
ENSCJAG00000012553	NOVEL	pseudogene	ENSCJAG00000012553	chromosome:C_jacchus3.2.1:7:1:155834243:1	148293071	148293462	D	<no descrition>
ENSCJAG00000013460	NOVEL	protein_coding	ENSCJAG00000013460	chromosome:C_jacchus3.2.1:7:1:155834243:1	148358998	148359324	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024719}  [Source:UniProtKB/TrEMBL;Acc:F6S2N6]
ENSCJAG00000013462	KNOWN	protein_coding	CTTNBP2NL	chromosome:C_jacchus3.2.1:7:1:155834243:1	148392565	148450170	D	CTTNBP2 N-terminal-like protein {ECO:0000313|EMBL:JAB11566.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024740}  [Source:UniProtKB/TrEMBL;Acc:F6RG01]
ENSCJAG00000008597	KNOWN	protein_coding	PET100	chromosome:C_jacchus3.2.1:22:1:49145316:1	7383260	7385053	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015828}  [Source:UniProtKB/TrEMBL;Acc:F7GU14]
ENSCJAG00000008598	KNOWN_BY_PROJECTION	protein_coding	PCP2	chromosome:C_jacchus3.2.1:22:1:49145316:1	7385122	7387241	R	Purkinje cell protein 2 [Source:HGNC Symbol;Acc:HGNC:30209]
ENSCJAG00000013473	KNOWN	protein_coding	WNT2B	chromosome:C_jacchus3.2.1:7:1:155834243:1	148505829	148519249	D	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F6QW35]
ENSCJAG00000010866	NOVEL	protein_coding	ENSCJAG00000010866	chromosome:C_jacchus3.2.1:X:1:142054208:1	43248328	43250510	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020040}  [Source:UniProtKB/TrEMBL;Acc:F7D3Y5]
ENSCJAG00000019981	KNOWN	protein_coding	GAS2L1	chromosome:C_jacchus3.2.1:1:1:210400635:1	192201047	192207069	D	GAS2-like protein 1 isoform a {ECO:0000313|EMBL:JAB16948.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037171}  [Source:UniProtKB/TrEMBL;Acc:F7AII8]
ENSCJAG00000033207	NOVEL	pseudogene	ENSCJAG00000033207	chromosome:C_jacchus3.2.1:7:1:155834243:1	19068948	19069210	D	<no descrition>
ENSCJAG00000008174	KNOWN_BY_PROJECTION	protein_coding	CASC10	chromosome:C_jacchus3.2.1:7:1:155834243:1	19088586	19089720	R	cancer susceptibility candidate 10 [Source:HGNC Symbol;Acc:HGNC:31448]
ENSCJAG00000008166	KNOWN_BY_PROJECTION	protein_coding	SKIDA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	19108252	19111160	R	SKI/DACH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32697]
ENSCJAG00000001488	KNOWN	protein_coding	ANAPC5	chromosome:C_jacchus3.2.1:9:1:124281992:1	112182432	112229441	R	Anaphase-promoting complex subunit 5 isoform a {ECO:0000313|EMBL:JAB35721.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002726}  [Source:UniProtKB/TrEMBL;Acc:F7IQN6]
ENSCJAG00000008081	KNOWN_BY_PROJECTION	protein_coding	MLLT10	chromosome:C_jacchus3.2.1:7:1:155834243:1	19128002	19374072	D	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
ENSCJAG00000008608	NOVEL	protein_coding	ENSCJAG00000008608	chromosome:C_jacchus3.2.1:22:1:49145316:1	7392310	7402433	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042954}  [Source:UniProtKB/TrEMBL;Acc:F6VLV2]
ENSCJAG00000019974	KNOWN_BY_PROJECTION	protein_coding	RASL10A	chromosome:C_jacchus3.2.1:1:1:210400635:1	192207570	192209534	R	RAS-like, family 10, member A [Source:HGNC Symbol;Acc:HGNC:16954]
ENSCJAG00000010874	NOVEL	pseudogene	ENSCJAG00000010874	chromosome:C_jacchus3.2.1:X:1:142054208:1	43441343	43442430	R	<no descrition>
ENSCJAG00000010876	KNOWN	protein_coding	FUNDC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	43482101	43502171	R	FUN14 domain-containing protein 1 {ECO:0000313|EMBL:JAB06752.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020061}  [Source:UniProtKB/TrEMBL;Acc:F7HHQ8]
ENSCJAG00000013490	KNOWN_BY_PROJECTION	protein_coding	ST7L	chromosome:C_jacchus3.2.1:7:1:155834243:1	148523934	148615735	R	suppression of tumorigenicity 7 like [Source:HGNC Symbol;Acc:HGNC:18441]
ENSCJAG00000019957	KNOWN_BY_PROJECTION	protein_coding	AP1B1	chromosome:C_jacchus3.2.1:1:1:210400635:1	192224121	192296544	R	adaptor-related protein complex 1, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:554]
ENSCJAG00000005886	KNOWN	protein_coding	COCH	chromosome:C_jacchus3.2.1:10:1:132174527:1	55105743	55126084	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010888}  [Source:UniProtKB/TrEMBL;Acc:F7IS55]
ENSCJAG00000010889	KNOWN_BY_PROJECTION	protein_coding	KDM6A	chromosome:C_jacchus3.2.1:X:1:142054208:1	43792078	43997829	D	lysine (K)-specific demethylase 6A [Source:HGNC Symbol;Acc:HGNC:12637]
ENSCJAG00000037032	KNOWN_BY_PROJECTION	protein_coding	KLHL40	chromosome:C_jacchus3.2.1:17:1:74750902:1	72901055	73103567	D	kelch-like family member 40 [Source:HGNC Symbol;Acc:HGNC:30372]
ENSCJAG00000018053	KNOWN	protein_coding	SEC22C	chromosome:C_jacchus3.2.1:17:1:74750902:1	72947488	72965458	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033369}; Vesicle-trafficking protein SEC22c isoform a {ECO:0000313|EMBL:JAB24133.1}  [Source:UniProtKB/TrEMBL;Acc:F6T5U2]
ENSCJAG00000004424	NOVEL	protein_coding	ENSCJAG00000004424	chromosome:C_jacchus3.2.1:7:1:155834243:1	19135127	19135568	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052200}  [Source:UniProtKB/TrEMBL;Acc:F7INS6]
ENSCJAG00000020022	NOVEL	protein_coding	ENSCJAG00000020022	chromosome:C_jacchus3.2.1:7:1:155834243:1	19140119	19149890	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007942}  [Source:UniProtKB/TrEMBL;Acc:F6ZQW2]
ENSCJAG00000008165	NOVEL	pseudogene	ENSCJAG00000008165	chromosome:C_jacchus3.2.1:7:1:155834243:1	19142645	19143418	R	<no descrition>
ENSCJAG00000031934	NOVEL	pseudogene	ENSCJAG00000031934	chromosome:C_jacchus3.2.1:7:1:155834243:1	19152122	19152364	D	<no descrition>
ENSCJAG00000023075	NOVEL	pseudogene	ENSCJAG00000023075	chromosome:C_jacchus3.2.1:4:1:171630274:1	82275262	82275724	D	<no descrition>
ENSCJAG00000018064	KNOWN_BY_PROJECTION	protein_coding	SS18L2	chromosome:C_jacchus3.2.1:17:1:74750902:1	72986712	72990978	D	synovial sarcoma translocation gene on chromosome 18-like 2 [Source:HGNC Symbol;Acc:HGNC:15593]
ENSCJAG00000015130	KNOWN	protein_coding	RIPPLY2	chromosome:C_jacchus3.2.1:4:1:171630274:1	82580730	82584733	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027895}  [Source:UniProtKB/TrEMBL;Acc:F7FRG1]
ENSCJAG00000008044	KNOWN	protein_coding	DNAJC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	19387077	19634778	R	DnaJ homolog subfamily C member 1 {ECO:0000313|EMBL:JAB02854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014907}  [Source:UniProtKB/TrEMBL;Acc:F7HXA5]
ENSCJAG00000018070	KNOWN_BY_PROJECTION	protein_coding	NKTR	chromosome:C_jacchus3.2.1:17:1:74750902:1	73008269	73050964	D	natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
ENSCJAG00000015140	KNOWN	protein_coding	CYB5R4	chromosome:C_jacchus3.2.1:4:1:171630274:1	82586995	82697126	D	Cytochrome b5 reductase 4 {ECO:0000313|EMBL:JAB06742.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027958}  [Source:UniProtKB/TrEMBL;Acc:F7HJT5]
ENSCJAG00000008077	NOVEL	pseudogene	ENSCJAG00000008077	chromosome:C_jacchus3.2.1:7:1:155834243:1	19422742	19423232	R	<no descrition>
ENSCJAG00000004533	KNOWN	protein_coding	MFAP3	chromosome:C_jacchus3.2.1:2:1:204313951:1	51980490	51984715	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008222}  [Source:UniProtKB/TrEMBL;Acc:F7IFM4]
ENSCJAG00000008042	NOVEL	pseudogene	ENSCJAG00000008042	chromosome:C_jacchus3.2.1:7:1:155834243:1	19690371	19691920	R	<no descrition>
ENSCJAG00000004532	NOVEL	pseudogene	ENSCJAG00000004532	chromosome:C_jacchus3.2.1:2:1:204313951:1	51997700	51999792	R	<no descrition>
ENSCJAG00000008034	NOVEL	protein_coding	ENSCJAG00000008034	chromosome:C_jacchus3.2.1:7:1:155834243:1	19905090	19905877	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014846}  [Source:UniProtKB/TrEMBL;Acc:F7I914]
ENSCJAG00000031178	NOVEL	protein_coding	ENSCJAG00000031178	chromosome:C_jacchus3.2.1:2:1:204313951:1	52231471	52234176	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048036}  [Source:UniProtKB/TrEMBL;Acc:F7G322]
ENSCJAG00000018096	KNOWN_BY_PROJECTION	protein_coding	ZBTB47	chromosome:C_jacchus3.2.1:17:1:74750902:1	73066671	73073038	D	zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
ENSCJAG00000007993	KNOWN	protein_coding	COMMD3	chromosome:C_jacchus3.2.1:7:1:155834243:1	19931783	19935939	D	COMM domain-containing protein 3 {ECO:0000313|EMBL:JAB06285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014835}  [Source:UniProtKB/TrEMBL;Acc:F7I938]
ENSCJAG00000032657	NOVEL	pseudogene	ENSCJAG00000032657	chromosome:C_jacchus3.2.1:17:1:74750902:1	73103181	73103319	D	<no descrition>
ENSCJAG00000004500	KNOWN_BY_PROJECTION	protein_coding	GALNT10	chromosome:C_jacchus3.2.1:2:1:204313951:1	52243138	52379245	D	polypeptide N-acetylgalactosaminyltransferase 10 [Source:HGNC Symbol;Acc:HGNC:19873]
ENSCJAG00000018116	KNOWN_BY_PROJECTION	protein_coding	HHATL	chromosome:C_jacchus3.2.1:17:1:74750902:1	73108048	73117692	R	hedgehog acyltransferase-like [Source:HGNC Symbol;Acc:HGNC:13242]
ENSCJAG00000019943	NOVEL	protein_coding	ENSCJAG00000019943	chromosome:C_jacchus3.2.1:1:1:210400635:1	192349046	192360268	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037105}  [Source:UniProtKB/TrEMBL;Acc:F6UXS8]
ENSCJAG00000004485	KNOWN_BY_PROJECTION	protein_coding	SAP30L	chromosome:C_jacchus3.2.1:2:1:204313951:1	52406665	52417838	D	SAP30-like [Source:HGNC Symbol;Acc:HGNC:25663]
ENSCJAG00000005822	KNOWN	protein_coding	STRN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	55126216	55236651	R	Striatin-3 isoform 2 {ECO:0000313|EMBL:JAB07116.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010786}  [Source:UniProtKB/TrEMBL;Acc:F7I8F1]
ENSCJAG00000036548	NOVEL	protein_coding	ENSCJAG00000036548	chromosome:C_jacchus3.2.1:7:1:155834243:1	19931822	19945396	D	<no descrition>
ENSCJAG00000018121	KNOWN_BY_PROJECTION	protein_coding	CCDC13	chromosome:C_jacchus3.2.1:17:1:74750902:1	73125194	73201421	R	coiled-coil domain containing 13 [Source:HGNC Symbol;Acc:HGNC:26358]
ENSCJAG00000032668	NOVEL	protein_coding	ENSCJAG00000032668	chromosome:C_jacchus3.2.1:17:1:74750902:1	73212956	73222778	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033496}  [Source:UniProtKB/TrEMBL;Acc:F6Q442]
ENSCJAG00000018130	KNOWN_BY_PROJECTION	protein_coding	UBXN7	chromosome:C_jacchus3.2.1:17:1:74750902:1	73290119	73357968	D	UBX domain protein 7 [Source:HGNC Symbol;Acc:HGNC:29119]
ENSCJAG00000004454	KNOWN_BY_PROJECTION	protein_coding	LARP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	52674781	52781467	D	La ribonucleoprotein domain family, member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
ENSCJAG00000008696	KNOWN_BY_PROJECTION	protein_coding	RETN	chromosome:C_jacchus3.2.1:22:1:49145316:1	7421728	7423068	D	resistin [Source:HGNC Symbol;Acc:HGNC:20389]
ENSCJAG00000018141	NOVEL	protein_coding	ENSCJAG00000018141	chromosome:C_jacchus3.2.1:17:1:74750902:1	73376919	73392087	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033573}  [Source:UniProtKB/TrEMBL;Acc:F6STQ3]
ENSCJAG00000002009	KNOWN_BY_PROJECTION	protein_coding	PIGG	chromosome:C_jacchus3.2.1:3:1:190850796:1	190440524	190484999	R	phosphatidylinositol glycan anchor biosynthesis, class G [Source:HGNC Symbol;Acc:HGNC:25985]
ENSCJAG00000008706	KNOWN_BY_PROJECTION	protein_coding	MCEMP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	7427230	7429524	D	mast cell-expressed membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:27291]
ENSCJAG00000008723	KNOWN_BY_PROJECTION	protein_coding	FCER2	chromosome:C_jacchus3.2.1:22:1:49145316:1	7438890	7440843	R	Fc fragment of IgE, low affinity II, receptor for (CD23) [Source:HGNC Symbol;Acc:HGNC:3612]
ENSCJAG00000020316	KNOWN	protein_coding	FAXDC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	52784498	52815957	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037767}; Uncharacterized protein C5orf4 {ECO:0000313|EMBL:JAB11146.1}  [Source:UniProtKB/TrEMBL;Acc:F6UR65]
ENSCJAG00000015086	KNOWN	protein_coding	PCYT1A	chromosome:C_jacchus3.2.1:17:1:74750902:1	73415550	73479156	D	Choline-phosphate cytidylyltransferase A {ECO:0000313|EMBL:JAB01736.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027811}  [Source:UniProtKB/TrEMBL;Acc:F7GTV8]
ENSCJAG00000006032	KNOWN_BY_PROJECTION	protein_coding	CLEC4M	chromosome:C_jacchus3.2.1:22:1:49145316:1	7447152	7468411	R	C-type lectin domain family 4, member M [Source:HGNC Symbol;Acc:HGNC:13523]
ENSCJAG00000013548	KNOWN	protein_coding	CAPZA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	148614394	148666710	D	F-actin-capping protein subunit alpha-1 {ECO:0000313|EMBL:JAB05823.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024981}  [Source:UniProtKB/TrEMBL;Acc:F6QI70]
ENSCJAG00000034321	NOVEL	protein_coding	ENSCJAG00000034321	chromosome:C_jacchus3.2.1:9:1:124281992:1	112250186	112253061	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044434}  [Source:UniProtKB/TrEMBL;Acc:F7D167]
ENSCJAG00000015171	KNOWN	protein_coding	MRAP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	82766580	82828306	D	Melanocortin-2 receptor accessory protein 2 {ECO:0000313|EMBL:JAB14662.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027970}  [Source:UniProtKB/TrEMBL;Acc:F7HEG2]
ENSCJAG00000015082	KNOWN_BY_PROJECTION	protein_coding	SLC51A	chromosome:C_jacchus3.2.1:17:1:74750902:1	73475026	73494785	R	solute carrier family 51, alpha subunit [Source:HGNC Symbol;Acc:HGNC:29955]
ENSCJAG00000019894	KNOWN	protein_coding	THOC5	chromosome:C_jacchus3.2.1:1:1:210400635:1	192375469	192418222	R	THO complex subunit 5 homolog {ECO:0000313|EMBL:JAB03026.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042475}  [Source:UniProtKB/TrEMBL;Acc:F6Z7F6]
ENSCJAG00000001536	KNOWN	protein_coding	RNF34	chromosome:C_jacchus3.2.1:9:1:124281992:1	112288622	112312799	D	E3 ubiquitin-protein ligase RNF34 isoform 2 {ECO:0000313|EMBL:JAB04069.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002773}  [Source:UniProtKB/TrEMBL;Acc:F7IKY3]
ENSCJAG00000015177	KNOWN_BY_PROJECTION	protein_coding	CEP162	chromosome:C_jacchus3.2.1:4:1:171630274:1	82874578	82989680	R	centrosomal protein 162kDa [Source:HGNC Symbol;Acc:HGNC:21107]
ENSCJAG00000015076	KNOWN_BY_PROJECTION	protein_coding	ZDHHC19	chromosome:C_jacchus3.2.1:17:1:74750902:1	73502753	73513554	D	zinc finger, DHHC-type containing 19 [Source:HGNC Symbol;Acc:HGNC:20713]
ENSCJAG00000032931	NOVEL	pseudogene	ENSCJAG00000032931	chromosome:C_jacchus3.2.1:17:1:74750902:1	73582070	73582404	R	<no descrition>
ENSCJAG00000001276	KNOWN_BY_PROJECTION	protein_coding	BTBD16	chromosome:C_jacchus3.2.1:12:1:121768101:1	110200086	110267565	D	BTB (POZ) domain containing 16 [Source:HGNC Symbol;Acc:HGNC:26340]
ENSCJAG00000006059	KNOWN_BY_PROJECTION	protein_coding	EVI5L	chromosome:C_jacchus3.2.1:22:1:49145316:1	7511606	7529055	D	ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:HGNC:30464]
ENSCJAG00000006062	KNOWN_BY_PROJECTION	protein_coding	PRR36	chromosome:C_jacchus3.2.1:22:1:49145316:1	7533662	8061970	R	proline rich 36 [Source:HGNC Symbol;Acc:HGNC:26172]
ENSCJAG00000007417	KNOWN	protein_coding	CNOT8	chromosome:C_jacchus3.2.1:2:1:204313951:1	52827807	52844028	D	CCR4-NOT transcription complex subunit 8 {ECO:0000313|EMBL:JAB03396.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013830}  [Source:UniProtKB/TrEMBL;Acc:F7BVW8]
ENSCJAG00000006077	KNOWN	protein_coding	LRRC8E	chromosome:C_jacchus3.2.1:22:1:49145316:1	7548073	7561615	D	Leucine-rich repeat-containing protein 8E isoform 1 {ECO:0000313|EMBL:JAB06164.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011181}  [Source:UniProtKB/TrEMBL;Acc:F7HZE8]
ENSCJAG00000020043	KNOWN	protein_coding	TFRC	chromosome:C_jacchus3.2.1:17:1:74750902:1	73605013	73637479	D	Transferrin receptor protein 1 {ECO:0000313|EMBL:JAB18216.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045446}  [Source:UniProtKB/TrEMBL;Acc:F6QFV8]
ENSCJAG00000001555	KNOWN_BY_PROJECTION	protein_coding	KDM2B	chromosome:C_jacchus3.2.1:9:1:124281992:1	112317172	112502734	R	lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
ENSCJAG00000006085	KNOWN	protein_coding	MAP2K7	chromosome:C_jacchus3.2.1:22:1:49145316:1	7564131	7572683	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048814}  [Source:UniProtKB/TrEMBL;Acc:F6TK20]
ENSCJAG00000007956	KNOWN_BY_PROJECTION	protein_coding	SPAG6	chromosome:C_jacchus3.2.1:7:1:155834243:1	19961605	20021702	D	sperm associated antigen 6 [Source:HGNC Symbol;Acc:HGNC:11215]
ENSCJAG00000005786	KNOWN	protein_coding	AP4S1	chromosome:C_jacchus3.2.1:10:1:132174527:1	55235846	55298092	D	AP-4 complex subunit sigma-1 isoform 2 {ECO:0000313|EMBL:JAB01785.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010680}  [Source:UniProtKB/TrEMBL;Acc:F7HMY7]
ENSCJAG00000006117	KNOWN	protein_coding	SNAPC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	7583298	7585992	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011265}; snRNA-activating protein complex subunit 2 {ECO:0000313|EMBL:JAB10173.1}  [Source:UniProtKB/TrEMBL;Acc:F7IN07]
ENSCJAG00000013592	KNOWN	protein_coding	MOV10	chromosome:C_jacchus3.2.1:7:1:155834243:1	148670940	148699034	D	Putative helicase MOV-10 {ECO:0000313|EMBL:JAB25347.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025111}  [Source:UniProtKB/TrEMBL;Acc:F6UZ66]
ENSCJAG00000007919	KNOWN	protein_coding	PIP4K2A	chromosome:C_jacchus3.2.1:7:1:155834243:1	20157081	20336010	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014706}  [Source:UniProtKB/TrEMBL;Acc:F7IQM8]
ENSCJAG00000002032	KNOWN_BY_PROJECTION	protein_coding	ZNF721	chromosome:C_jacchus3.2.1:3:1:190850796:1	190620884	190801554	R	zinc finger protein 721 [Source:HGNC Symbol;Acc:HGNC:29425]
ENSCJAG00000016427	KNOWN_BY_PROJECTION	protein_coding	TNK2	chromosome:C_jacchus3.2.1:17:1:74750902:1	73682970	73706121	D	tyrosine kinase, non-receptor, 2 [Source:HGNC Symbol;Acc:HGNC:19297]
ENSCJAG00000035243	NOVEL	protein_coding	ENSCJAG00000035243	chromosome:C_jacchus3.2.1:17:1:74750902:1	73738620	73740192	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052425}  [Source:UniProtKB/TrEMBL;Acc:F7I790]
ENSCJAG00000001251	KNOWN_BY_PROJECTION	protein_coding	PLEKHA1	chromosome:C_jacchus3.2.1:12:1:121768101:1	110335106	110380427	D	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 [Source:HGNC Symbol;Acc:HGNC:14335]
ENSCJAG00000019879	KNOWN	protein_coding	NIPSNAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	192419409	192460082	R	Protein NipSnap homolog 1 isoform 1 {ECO:0000313|EMBL:JAB05507.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036977}  [Source:UniProtKB/TrEMBL;Acc:F6Q7H7]
ENSCJAG00000016442	KNOWN_BY_PROJECTION	protein_coding	MUC4	chromosome:C_jacchus3.2.1:17:1:74750902:1	73787663	73824385	D	mucin 4, cell surface associated [Source:HGNC Symbol;Acc:HGNC:7514]
ENSCJAG00000001226	KNOWN_BY_PROJECTION	protein_coding	HTRA1	chromosome:C_jacchus3.2.1:12:1:121768101:1	110419396	110474481	D	HtrA serine peptidase 1 [Source:HGNC Symbol;Acc:HGNC:9476]
ENSCJAG00000016448	KNOWN_BY_PROJECTION	protein_coding	MUC20	chromosome:C_jacchus3.2.1:17:1:74750902:1	73838800	73851079	R	mucin 20, cell surface associated [Source:HGNC Symbol;Acc:HGNC:23282]
ENSCJAG00000001157	KNOWN_BY_PROJECTION	protein_coding	DMBT1	chromosome:C_jacchus3.2.1:12:1:121768101:1	110535600	110576628	D	deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
ENSCJAG00000016456	KNOWN	protein_coding	KIAA0226	chromosome:C_jacchus3.2.1:17:1:74750902:1	73911341	73970171	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030333}  [Source:UniProtKB/TrEMBL;Acc:F6XHM6]
ENSCJAG00000005631	KNOWN	protein_coding	HECTD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	55306053	55401769	R	E3 ubiquitin-protein ligase HECTD1 {ECO:0000313|EMBL:JAB08907.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010609}  [Source:UniProtKB/TrEMBL;Acc:F7HZ46]
ENSCJAG00000001154	NOVEL	protein_coding	ENSCJAG00000001154	chromosome:C_jacchus3.2.1:12:1:121768101:1	110612518	110618805	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001976}  [Source:UniProtKB/TrEMBL;Acc:F6WGC8]
ENSCJAG00000032714	NOVEL	protein_coding	ENSCJAG00000032714	chromosome:C_jacchus3.2.1:12:1:121768101:1	110719537	110747610	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047544}  [Source:UniProtKB/TrEMBL;Acc:F7EGK8]
ENSCJAG00000007336	KNOWN_BY_PROJECTION	protein_coding	GEMIN5	chromosome:C_jacchus3.2.1:2:1:204313951:1	52848864	52902305	R	gem (nuclear organelle) associated protein 5 [Source:HGNC Symbol;Acc:HGNC:20043]
ENSCJAG00000011115	KNOWN_BY_PROJECTION	protein_coding	CXorf36	chromosome:C_jacchus3.2.1:X:1:142054208:1	44027644	44086221	R	chromosome X open reading frame 36 [Source:HGNC Symbol;Acc:HGNC:25866]
ENSCJAG00000007880	KNOWN_BY_PROJECTION	protein_coding	ARMC3	chromosome:C_jacchus3.2.1:7:1:155834243:1	20532946	20644755	D	armadillo repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:30964]
ENSCJAG00000016488	KNOWN	protein_coding	FYTTD1	chromosome:C_jacchus3.2.1:17:1:74750902:1	73983556	74017252	D	UAP56-interacting factor isoform 1 {ECO:0000313|EMBL:JAB08360.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045078}  [Source:UniProtKB/TrEMBL;Acc:F6T8D3]
ENSCJAG00000001132	KNOWN_BY_PROJECTION	protein_coding	CUZD1	chromosome:C_jacchus3.2.1:12:1:121768101:1	110791436	110818181	R	CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
ENSCJAG00000006140	NOVEL	protein_coding	ENSCJAG00000006140	chromosome:C_jacchus3.2.1:22:1:49145316:1	7589929	7612139	R	Mitochondrial import inner membrane translocase subunit TIM44 {ECO:0000256|PIRNR:PIRNR037871}  [Source:UniProtKB/TrEMBL;Acc:F7IDG0]
ENSCJAG00000019893	KNOWN_BY_PROJECTION	protein_coding	TRIML2	chromosome:C_jacchus3.2.1:1:1:210400635:1	192432271	192436093	R	tripartite motif family-like 2 [Source:HGNC Symbol;Acc:HGNC:26378]
ENSCJAG00000018727	KNOWN_BY_PROJECTION	protein_coding	SPATA20	chromosome:C_jacchus3.2.1:5:1:159171411:1	107027516	107035533	R	spermatogenesis associated 20 [Source:HGNC Symbol;Acc:HGNC:26125]
ENSCJAG00000001594	NOVEL	pseudogene	ENSCJAG00000001594	chromosome:C_jacchus3.2.1:9:1:124281992:1	112385868	112386149	D	<no descrition>
ENSCJAG00000013657	KNOWN	protein_coding	RHOC	chromosome:C_jacchus3.2.1:7:1:155834243:1	148699413	148706793	R	Rho-related GTP-binding protein RhoC {ECO:0000313|EMBL:JAB03443.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049022}  [Source:UniProtKB/TrEMBL;Acc:F6YJ52]
ENSCJAG00000017005	KNOWN_BY_PROJECTION	protein_coding	ORAI1	chromosome:C_jacchus3.2.1:9:1:124281992:1	112570878	112571606	D	ORAI calcium release-activated calcium modulator 1 [Source:HGNC Symbol;Acc:HGNC:25896]
ENSCJAG00000032571	NOVEL	protein_coding	ENSCJAG00000032571	chromosome:C_jacchus3.2.1:22:1:49145316:1	7605029	7642721	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044012}  [Source:UniProtKB/TrEMBL;Acc:F7HHS6]
ENSCJAG00000006163	KNOWN_BY_PROJECTION	protein_coding	CCL25	chromosome:C_jacchus3.2.1:22:1:49145316:1	7691763	7696541	D	chemokine (C-C motif) ligand 25 [Source:HGNC Symbol;Acc:HGNC:10624]
ENSCJAG00000016990	KNOWN_BY_PROJECTION	protein_coding	MORN3	chromosome:C_jacchus3.2.1:9:1:124281992:1	112585883	112602716	R	MORN repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:29807]
ENSCJAG00000032996	NOVEL	pseudogene	ENSCJAG00000032996	chromosome:C_jacchus3.2.1:X:1:142054208:1	45016933	45017733	D	<no descrition>
ENSCJAG00000006168	NOVEL	protein_coding	ENSCJAG00000006168	chromosome:C_jacchus3.2.1:22:1:49145316:1	7702698	7763264	R	<no descrition>
ENSCJAG00000007325	KNOWN	protein_coding	MRPL22	chromosome:C_jacchus3.2.1:2:1:204313951:1	52904176	52948197	D	39S ribosomal protein L22, mitochondrial isoform a {ECO:0000313|EMBL:JAB02959.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013654}  [Source:UniProtKB/TrEMBL;Acc:F7BXU8]
ENSCJAG00000011977	NOVEL	protein_coding	ENSCJAG00000011977	chromosome:C_jacchus3.2.1:X:1:142054208:1	45383920	45411605	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021988}  [Source:UniProtKB/TrEMBL;Acc:F6T1E2]
ENSCJAG00000018535	KNOWN_BY_PROJECTION	protein_coding	EPN3	chromosome:C_jacchus3.2.1:5:1:159171411:1	107039815	107050732	R	epsin 3 [Source:HGNC Symbol;Acc:HGNC:18235]
ENSCJAG00000032594	KNOWN_BY_PROJECTION	protein_coding	FBN3	chromosome:C_jacchus3.2.1:22:1:49145316:1	7771051	7795920	R	fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
ENSCJAG00000021954	NOVEL	protein_coding	ENSCJAG00000021954	chromosome:C_jacchus3.2.1:9:1:124281992:1	112623936	112624663	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F6XYD5]
ENSCJAG00000010661	KNOWN	protein_coding	CERS4	chromosome:C_jacchus3.2.1:22:1:49145316:1	7902113	7916409	D	Ceramide synthase 4 {ECO:0000313|EMBL:JAB02211.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019696}  [Source:UniProtKB/TrEMBL;Acc:F6SFF2]
ENSCJAG00000016971	KNOWN_BY_PROJECTION	protein_coding	TMEM120B	chromosome:C_jacchus3.2.1:9:1:124281992:1	112634935	112692731	D	transmembrane protein 120B [Source:HGNC Symbol;Acc:HGNC:32008]
ENSCJAG00000013680	KNOWN	protein_coding	PPM1J	chromosome:C_jacchus3.2.1:7:1:155834243:1	148711665	148716177	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025173}  [Source:UniProtKB/TrEMBL;Acc:F7BJS5]
ENSCJAG00000033378	NOVEL	protein_coding	ENSCJAG00000033378	chromosome:C_jacchus3.2.1:X:1:142054208:1	45393276	45394066	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046843}  [Source:UniProtKB/TrEMBL;Acc:F7IMF3]
ENSCJAG00000011965	KNOWN_BY_PROJECTION	protein_coding	ZNF674	chromosome:C_jacchus3.2.1:X:1:142054208:1	45427698	45466427	R	zinc finger protein 674 [Source:HGNC Symbol;Acc:HGNC:17625]
ENSCJAG00000013689	KNOWN_BY_PROJECTION	protein_coding	FAM19A3	chromosome:C_jacchus3.2.1:7:1:155834243:1	148722857	148727755	D	family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 [Source:HGNC Symbol;Acc:HGNC:21590]
ENSCJAG00000011998	KNOWN_BY_PROJECTION	protein_coding	CHST7	chromosome:C_jacchus3.2.1:X:1:142054208:1	45516871	45518887	D	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 [Source:HGNC Symbol;Acc:HGNC:13817]
ENSCJAG00000015218	KNOWN_BY_PROJECTION	protein_coding	TBX18	chromosome:C_jacchus3.2.1:4:1:171630274:1	83526852	83554740	R	T-box 18 [Source:HGNC Symbol;Acc:HGNC:11595]
ENSCJAG00000001589	NOVEL	pseudogene	ENSCJAG00000001589	chromosome:C_jacchus3.2.1:4:1:171630274:1	83676066	83677340	D	<no descrition>
ENSCJAG00000012004	KNOWN_BY_PROJECTION	protein_coding	SLC9A7	chromosome:C_jacchus3.2.1:X:1:142054208:1	45555829	45626752	R	solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 [Source:HGNC Symbol;Acc:HGNC:17123]
ENSCJAG00000007288	KNOWN	protein_coding	SGCD	chromosome:C_jacchus3.2.1:2:1:204313951:1	54468936	54918134	D	Delta-sarcoglycan isoform 1 {ECO:0000313|EMBL:JAB03300.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013608}  [Source:UniProtKB/TrEMBL;Acc:F7CTF1]
ENSCJAG00000015234	KNOWN	protein_coding	NT5E	chromosome:C_jacchus3.2.1:4:1:171630274:1	84361542	84418761	D	5'-nucleotidase isoform 1 preproprotein {ECO:0000313|EMBL:JAB17734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047250}  [Source:UniProtKB/TrEMBL;Acc:F7IFX4]
ENSCJAG00000016987	NOVEL	pseudogene	ENSCJAG00000016987	chromosome:C_jacchus3.2.1:9:1:124281992:1	112647506	112648242	D	<no descrition>
ENSCJAG00000013696	NOVEL	pseudogene	ENSCJAG00000013696	chromosome:C_jacchus3.2.1:7:1:155834243:1	148785476	148785970	D	<no descrition>
ENSCJAG00000016963	NOVEL	protein_coding	ENSCJAG00000016963	chromosome:C_jacchus3.2.1:9:1:124281992:1	112696277	112711184	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031201}  [Source:UniProtKB/TrEMBL;Acc:F7IF60]
ENSCJAG00000013698	KNOWN	protein_coding	SLC16A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	148888340	148902794	R	Monocarboxylate transporter 1 {ECO:0000313|EMBL:JAB08321.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025198}  [Source:UniProtKB/TrEMBL;Acc:F7AIN6]
ENSCJAG00000010696	NOVEL	pseudogene	ENSCJAG00000010696	chromosome:C_jacchus3.2.1:22:1:49145316:1	7948207	7949013	R	<no descrition>
ENSCJAG00000010700	KNOWN_BY_PROJECTION	protein_coding	CD320	chromosome:C_jacchus3.2.1:22:1:49145316:1	7974576	7980729	R	CD320 molecule [Source:HGNC Symbol;Acc:HGNC:16692]
ENSCJAG00000007284	KNOWN_BY_PROJECTION	protein_coding	TIMD4	chromosome:C_jacchus3.2.1:2:1:204313951:1	55116614	55159271	R	T-cell immunoglobulin and mucin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25132]
ENSCJAG00000016930	KNOWN_BY_PROJECTION	protein_coding	SETD1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	112721616	112748001	D	SET domain containing 1B [Source:HGNC Symbol;Acc:HGNC:29187]
ENSCJAG00000007257	KNOWN_BY_PROJECTION	protein_coding	TTYH3	chromosome:C_jacchus3.2.1:2:1:204313951:1	55260354	55294166	D	tweety family member 3 [Source:HGNC Symbol;Acc:HGNC:22222]
ENSCJAG00000012024	NOVEL	pseudogene	ENSCJAG00000012024	chromosome:C_jacchus3.2.1:X:1:142054208:1	45602630	45602956	R	<no descrition>
ENSCJAG00000012026	NOVEL	pseudogene	ENSCJAG00000012026	chromosome:C_jacchus3.2.1:X:1:142054208:1	45752690	45753167	R	<no descrition>
ENSCJAG00000035782	KNOWN_BY_PROJECTION	protein_coding	FAM24B	chromosome:C_jacchus3.2.1:12:1:121768101:1	110808454	110818192	R	family with sequence similarity 24, member B [Source:HGNC Symbol;Acc:HGNC:23475]
ENSCJAG00000012032	KNOWN	protein_coding	RP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	45791395	45835055	D	Protein XRP2 {ECO:0000313|EMBL:JAB14947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022089}  [Source:UniProtKB/TrEMBL;Acc:F6ZU00]
ENSCJAG00000010732	KNOWN_BY_PROJECTION	protein_coding	KANK3	chromosome:C_jacchus3.2.1:22:1:49145316:1	7981542	8006214	R	KN motif and ankyrin repeat domains 3 [Source:HGNC Symbol;Acc:HGNC:24796]
ENSCJAG00000001125	NOVEL	protein_coding	ENSCJAG00000001125	chromosome:C_jacchus3.2.1:12:1:121768101:1	110822309	110827114	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001934}  [Source:UniProtKB/TrEMBL;Acc:F6XQK0]
ENSCJAG00000016506	KNOWN_BY_PROJECTION	protein_coding	LRCH3	chromosome:C_jacchus3.2.1:17:1:74750902:1	74026326	74129682	D	leucine-rich repeats and calponin homology (CH) domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28637]
ENSCJAG00000012041	KNOWN	protein_coding	JADE3	chromosome:C_jacchus3.2.1:X:1:142054208:1	45867102	46029466	D	Protein Jade-3 {ECO:0000313|EMBL:JAB03570.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022143}  [Source:UniProtKB/TrEMBL;Acc:F6XP86]
ENSCJAG00000034631	NOVEL	protein_coding	ENSCJAG00000034631	chromosome:C_jacchus3.2.1:12:1:121768101:1	110835280	110835577	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001931}  [Source:UniProtKB/TrEMBL;Acc:F6XQM7]
ENSCJAG00000001122	KNOWN_BY_PROJECTION	protein_coding	FAM24A	chromosome:C_jacchus3.2.1:12:1:121768101:1	110839815	110841116	D	family with sequence similarity 24, member A [Source:HGNC Symbol;Acc:HGNC:23470]
ENSCJAG00000013709	KNOWN_BY_PROJECTION	protein_coding	LRIG2	chromosome:C_jacchus3.2.1:7:1:155834243:1	149060016	149149822	D	leucine-rich repeats and immunoglobulin-like domains 2 [Source:HGNC Symbol;Acc:HGNC:20889]
ENSCJAG00000001118	KNOWN	protein_coding	C10ORF88	chromosome:C_jacchus3.2.1:12:1:121768101:1	110850539	110871922	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001925}; Uncharacterized protein C10orf88 {ECO:0000313|EMBL:JAB26085.1}  [Source:UniProtKB/TrEMBL;Acc:F6XR03]
ENSCJAG00000019833	KNOWN	protein_coding	NF2	chromosome:C_jacchus3.2.1:1:1:210400635:1	192471259	192570094	D	Merlin isoform 1 {ECO:0000313|EMBL:JAB02476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036954}  [Source:UniProtKB/TrEMBL;Acc:F6QIK4]
ENSCJAG00000012065	KNOWN	protein_coding	RGN	chromosome:C_jacchus3.2.1:X:1:142054208:1	46048939	46062742	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022180}  [Source:UniProtKB/TrEMBL;Acc:F6WEK2]
ENSCJAG00000036251	NOVEL	protein_coding	ENSCJAG00000036251	chromosome:C_jacchus3.2.1:9:1:124281992:1	112741764	112753694	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052206}  [Source:UniProtKB/TrEMBL;Acc:F7ILJ8]
ENSCJAG00000015255	KNOWN_BY_PROJECTION	protein_coding	SNX14	chromosome:C_jacchus3.2.1:4:1:171630274:1	84435182	84549847	R	sorting nexin 14 [Source:HGNC Symbol;Acc:HGNC:14977]
ENSCJAG00000001117	KNOWN_BY_PROJECTION	protein_coding	PSTK	chromosome:C_jacchus3.2.1:12:1:121768101:1	110905173	110917022	D	phosphoseryl-tRNA kinase [Source:HGNC Symbol;Acc:HGNC:28578]
ENSCJAG00000007233	KNOWN_BY_PROJECTION	protein_coding	LFNG	chromosome:C_jacchus3.2.1:2:1:204313951:1	55305042	55315139	R	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:6560]
ENSCJAG00000037961	NOVEL	protein_coding	ENSCJAG00000037961	chromosome:C_jacchus3.2.1:9:1:124281992:1	112741938	112774190	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052494}  [Source:UniProtKB/TrEMBL;Acc:F7I010]
ENSCJAG00000032441	KNOWN_BY_PROJECTION	protein_coding	GRIFIN	chromosome:C_jacchus3.2.1:2:1:204313951:1	55363112	55364617	D	galectin-related inter-fiber protein [Source:HGNC Symbol;Acc:HGNC:4577]
ENSCJAG00000001109	KNOWN	protein_coding	IKZF5	chromosome:C_jacchus3.2.1:12:1:121768101:1	110917452	110934341	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001917}; Zinc finger protein Pegasus {ECO:0000313|EMBL:JAB10031.1}  [Source:UniProtKB/TrEMBL;Acc:F6YBV6]
ENSCJAG00000001423	KNOWN	protein_coding	CHST12	chromosome:C_jacchus3.2.1:2:1:204313951:1	55408370	55437065	R	Carbohydrate sulfotransferase 12 {ECO:0000313|EMBL:JAB01993.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002520}  [Source:UniProtKB/TrEMBL;Acc:F7INE5]
ENSCJAG00000018762	KNOWN_BY_PROJECTION	protein_coding	MYCBPAP	chromosome:C_jacchus3.2.1:5:1:159171411:1	107051895	107075916	R	MYCBP associated protein [Source:HGNC Symbol;Acc:HGNC:19677]
ENSCJAG00000032572	NOVEL	protein_coding	ENSCJAG00000032572	chromosome:C_jacchus3.2.1:9:1:124281992:1	112751166	112767235	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037245}  [Source:UniProtKB/TrEMBL;Acc:F6W2P7]
ENSCJAG00000001092	KNOWN	protein_coding	ACADSB	chromosome:C_jacchus3.2.1:12:1:121768101:1	110934649	111049080	D	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial {ECO:0000313|EMBL:JAB39844.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046411}  [Source:UniProtKB/TrEMBL;Acc:F7ISD2]
ENSCJAG00000000786	KNOWN_BY_PROJECTION	protein_coding	IQCG	chromosome:C_jacchus3.2.1:17:1:74750902:1	74134501	74180156	R	IQ motif containing G [Source:HGNC Symbol;Acc:HGNC:25251]
ENSCJAG00000007871	KNOWN_BY_PROJECTION	protein_coding	MSRB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	20708866	20742227	D	methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:HGNC:17061]
ENSCJAG00000001442	KNOWN	protein_coding	EIF3B	chromosome:C_jacchus3.2.1:2:1:204313951:1	55500131	55523040	R	Eukaryotic translation initiation factor 3 subunit B {ECO:0000256|HAMAP-Rule:MF_03001, ECO:0000256|PIRNR:PIRNR036424}  [Source:UniProtKB/TrEMBL;Acc:F7IGF2]
ENSCJAG00000000785	KNOWN_BY_PROJECTION	protein_coding	RPL35A	chromosome:C_jacchus3.2.1:17:1:74750902:1	74170718	74175774	D	ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345]
ENSCJAG00000016882	KNOWN_BY_PROJECTION	protein_coding	HPD	chromosome:C_jacchus3.2.1:9:1:124281992:1	112758972	112778907	R	4-hydroxyphenylpyruvate dioxygenase [Source:HGNC Symbol;Acc:HGNC:5147]
ENSCJAG00000007862	KNOWN_BY_PROJECTION	protein_coding	PTF1A	chromosome:C_jacchus3.2.1:7:1:155834243:1	20803340	20804989	D	pancreas specific transcription factor, 1a [Source:HGNC Symbol;Acc:HGNC:23734]
ENSCJAG00000010709	KNOWN	protein_coding	NDUFA7	chromosome:C_jacchus3.2.1:22:1:49145316:1	7984403	7992632	R	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 {ECO:0000313|EMBL:JAB03885.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019746}  [Source:UniProtKB/TrEMBL;Acc:F6WY99]
ENSCJAG00000007860	NOVEL	protein_coding	ENSCJAG00000007860	chromosome:C_jacchus3.2.1:7:1:155834243:1	20814856	20839237	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014551}  [Source:UniProtKB/TrEMBL;Acc:F7IGE7]
ENSCJAG00000010726	NOVEL	protein_coding	ENSCJAG00000010726	chromosome:C_jacchus3.2.1:22:1:49145316:1	7992736	7993531	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019758}  [Source:UniProtKB/TrEMBL;Acc:F6WXM1]
ENSCJAG00000000772	KNOWN	protein_coding	LMLN	chromosome:C_jacchus3.2.1:17:1:74750902:1	74180337	74269949	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001330}  [Source:UniProtKB/TrEMBL;Acc:F7CEP7]
ENSCJAG00000007850	KNOWN_BY_PROJECTION	protein_coding	C10orf67	chromosome:C_jacchus3.2.1:7:1:155834243:1	20869298	20933006	R	chromosome 10 open reading frame 67 [Source:HGNC Symbol;Acc:HGNC:28716]
ENSCJAG00000012090	KNOWN_BY_PROJECTION	protein_coding	NDUFB11	chromosome:C_jacchus3.2.1:X:1:142054208:1	46103394	46107156	R	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa [Source:HGNC Symbol;Acc:HGNC:20372]
ENSCJAG00000007848	KNOWN_BY_PROJECTION	protein_coding	OTUD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	21023999	21025566	D	OTU deubiquitinase 1 [Source:HGNC Symbol;Acc:HGNC:27346]
ENSCJAG00000007843	KNOWN_BY_PROJECTION	protein_coding	IGBP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	21073806	21074170	R	immunoglobulin (CD79A) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5461]
ENSCJAG00000007836	NOVEL	pseudogene	ENSCJAG00000007836	chromosome:C_jacchus3.2.1:7:1:155834243:1	21276674	21278161	R	<no descrition>
ENSCJAG00000018782	KNOWN_BY_PROJECTION	protein_coding	RSAD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	107095694	107103121	R	radical S-adenosyl methionine domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25634]
ENSCJAG00000012101	KNOWN_BY_PROJECTION	protein_coding	RBM10	chromosome:C_jacchus3.2.1:X:1:142054208:1	46129089	46149941	D	RNA binding motif protein 10 [Source:HGNC Symbol;Acc:HGNC:9896]
ENSCJAG00000010768	KNOWN_BY_PROJECTION	protein_coding	ANGPTL4	chromosome:C_jacchus3.2.1:22:1:49145316:1	8042868	8054733	D	angiopoietin-like 4 [Source:HGNC Symbol;Acc:HGNC:16039]
ENSCJAG00000021292	KNOWN	protein_coding	ZNF713	chromosome:C_jacchus3.2.1:17:1:74750902:1	74411478	74427061	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039627}; Zinc finger protein 713 {ECO:0000313|EMBL:JAB01727.1}  [Source:UniProtKB/TrEMBL;Acc:F7GP63]
ENSCJAG00000021291	KNOWN	protein_coding	ENSCJAG00000021291	chromosome:C_jacchus3.2.1:17:1:74750902:1	74457321	74461443	D	28S ribosomal protein S17, mitochondrial {ECO:0000313|EMBL:JAB24203.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039624}  [Source:UniProtKB/TrEMBL;Acc:F7GP74]
ENSCJAG00000001087	KNOWN_BY_PROJECTION	protein_coding	HMX3	chromosome:C_jacchus3.2.1:12:1:121768101:1	111064320	111066019	D	H6 family homeobox 3 [Source:HGNC Symbol;Acc:HGNC:5019]
ENSCJAG00000021290	KNOWN	protein_coding	GBAS	chromosome:C_jacchus3.2.1:17:1:74750902:1	74483511	74506245	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039623}  [Source:UniProtKB/TrEMBL;Acc:F7GP78]
ENSCJAG00000037288	NOVEL	protein_coding	ENSCJAG00000037288	chromosome:C_jacchus3.2.1:9:1:124281992:1	112766805	112768820	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052383}  [Source:UniProtKB/TrEMBL;Acc:F7ILD1]
ENSCJAG00000010778	KNOWN_BY_PROJECTION	protein_coding	RAB11B	chromosome:C_jacchus3.2.1:22:1:49145316:1	8061175	8076313	D	RAB11B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9761]
ENSCJAG00000013766	NOVEL	pseudogene	ENSCJAG00000013766	chromosome:C_jacchus3.2.1:7:1:155834243:1	149085728	149087315	D	<no descrition>
ENSCJAG00000031175	NOVEL	pseudogene	ENSCJAG00000031175	chromosome:C_jacchus3.2.1:7:1:155834243:1	149252836	149253269	R	<no descrition>
ENSCJAG00000010794	KNOWN	protein_coding	MARCH2	chromosome:C_jacchus3.2.1:22:1:49145316:1	8101152	8110082	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019900}  [Source:UniProtKB/TrEMBL;Acc:F6ZRL5]
ENSCJAG00000011928	KNOWN_BY_PROJECTION	protein_coding	MAGI3	chromosome:C_jacchus3.2.1:7:1:155834243:1	149407999	149700256	D	membrane associated guanylate kinase, WW and PDZ domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29647]
ENSCJAG00000018788	KNOWN_BY_PROJECTION	protein_coding	ACSF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	107103286	107151618	R	acyl-CoA synthetase family member 2 [Source:HGNC Symbol;Acc:HGNC:26101]
ENSCJAG00000010802	KNOWN_BY_PROJECTION	protein_coding	HNRNPM	chromosome:C_jacchus3.2.1:22:1:49145316:1	8116288	8162305	D	heterogeneous nuclear ribonucleoprotein M [Source:HGNC Symbol;Acc:HGNC:5046]
ENSCJAG00000001454	NOVEL	protein_coding	ENSCJAG00000001454	chromosome:C_jacchus3.2.1:2:1:204313951:1	55606417	55619794	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002581}  [Source:UniProtKB/TrEMBL;Acc:F7IGC6]
ENSCJAG00000021288	KNOWN_BY_PROJECTION	protein_coding	PSPH	chromosome:C_jacchus3.2.1:17:1:74750902:1	74514558	74541179	R	phosphoserine phosphatase [Source:HGNC Symbol;Acc:HGNC:9577]
ENSCJAG00000007722	KNOWN_BY_PROJECTION	protein_coding	KIAA1217	chromosome:C_jacchus3.2.1:7:1:155834243:1	21584481	22124220	D	KIAA1217 [Source:HGNC Symbol;Acc:HGNC:25428]
ENSCJAG00000001429	KNOWN_BY_PROJECTION	protein_coding	NUDT1	chromosome:C_jacchus3.2.1:2:1:204313951:1	55623748	55640814	R	nudix (nucleoside diphosphate linked moiety X)-type motif 1 [Source:HGNC Symbol;Acc:HGNC:8048]
ENSCJAG00000012147	KNOWN_BY_PROJECTION	protein_coding	UBA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	46154802	46179541	D	ubiquitin-like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:HGNC:12469]
ENSCJAG00000012018	KNOWN_BY_PROJECTION	protein_coding	PHTF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	149557610	149779592	R	putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
ENSCJAG00000021279	KNOWN	protein_coding	CCT6A	chromosome:C_jacchus3.2.1:17:1:74750902:1	74561248	74576204	D	T-complex protein 1 subunit zeta isoform a {ECO:0000313|EMBL:JAB07868.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026978}  [Source:UniProtKB/TrEMBL;Acc:F7IN44]
ENSCJAG00000019829	KNOWN	protein_coding	CABP7	chromosome:C_jacchus3.2.1:1:1:210400635:1	192597508	192607025	D	Calcium-binding protein 7 {ECO:0000313|EMBL:JAB22919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036860}  [Source:UniProtKB/TrEMBL;Acc:F6SZ19]
ENSCJAG00000005593	KNOWN_BY_PROJECTION	protein_coding	HEATR5A	chromosome:C_jacchus3.2.1:10:1:132174527:1	55464638	55667713	R	HEAT repeat containing 5A [Source:HGNC Symbol;Acc:HGNC:20276]
ENSCJAG00000021763	KNOWN_BY_PROJECTION	protein_coding	ZMAT5	chromosome:C_jacchus3.2.1:1:1:210400635:1	192608624	192617407	R	zinc finger, matrin-type 5 [Source:HGNC Symbol;Acc:HGNC:28046]
ENSCJAG00000001081	KNOWN_BY_PROJECTION	protein_coding	HMX2	chromosome:C_jacchus3.2.1:12:1:121768101:1	111076326	111079496	D	H6 family homeobox 2 [Source:HGNC Symbol;Acc:HGNC:5018]
ENSCJAG00000019822	KNOWN_BY_PROJECTION	protein_coding	ASCC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	192669193	192713932	R	activating signal cointegrator 1 complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24103]
ENSCJAG00000001457	KNOWN_BY_PROJECTION	protein_coding	FTSJ2	chromosome:C_jacchus3.2.1:2:1:204313951:1	55641570	55649676	D	FtsJ RNA methyltransferase homolog 2 (E. coli) [Source:HGNC Symbol;Acc:HGNC:16352]
ENSCJAG00000016869	KNOWN	protein_coding	PSMD9	chromosome:C_jacchus3.2.1:9:1:124281992:1	112812077	112843072	D	26S proteasome non-ATPase regulatory subunit 9 isoform 1 {ECO:0000313|EMBL:JAB09091.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031060}  [Source:UniProtKB/TrEMBL;Acc:F7HWG2]
ENSCJAG00000001463	KNOWN_BY_PROJECTION	protein_coding	MAD1L1	chromosome:C_jacchus3.2.1:2:1:204313951:1	55652203	56079058	D	MAD1 mitotic arrest deficient-like 1 (yeast) [Source:HGNC Symbol;Acc:HGNC:6762]
ENSCJAG00000007833	NOVEL	pseudogene	ENSCJAG00000007833	chromosome:C_jacchus3.2.1:7:1:155834243:1	21998386	21998636	D	<no descrition>
ENSCJAG00000018813	KNOWN_BY_PROJECTION	protein_coding	CHAD	chromosome:C_jacchus3.2.1:5:1:159171411:1	107112573	107116557	D	chondroadherin [Source:HGNC Symbol;Acc:HGNC:1909]
ENSCJAG00000001066	KNOWN	protein_coding	BUB3	chromosome:C_jacchus3.2.1:12:1:121768101:1	111083051	111094101	D	Mitotic checkpoint protein BUB3 isoform a {ECO:0000313|EMBL:JAB06063.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001850}  [Source:UniProtKB/TrEMBL;Acc:F7BW31]
ENSCJAG00000018827	KNOWN	protein_coding	LRRC59	chromosome:C_jacchus3.2.1:5:1:159171411:1	107167001	107182193	D	Leucine-rich repeat-containing protein 59 {ECO:0000313|EMBL:JAB26851.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034982}  [Source:UniProtKB/TrEMBL;Acc:F7I3G9]
ENSCJAG00000010913	NOVEL	protein_coding	ENSCJAG00000010913	chromosome:C_jacchus3.2.1:22:1:49145316:1	8163365	8176302	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020136}  [Source:UniProtKB/TrEMBL;Acc:F7GRM2]
ENSCJAG00000007642	KNOWN_BY_PROJECTION	protein_coding	ARHGAP21	chromosome:C_jacchus3.2.1:7:1:155834243:1	22160217	22293624	R	Rho GTPase activating protein 21 [Source:HGNC Symbol;Acc:HGNC:23725]
ENSCJAG00000018843	KNOWN	protein_coding	EME1	chromosome:C_jacchus3.2.1:5:1:159171411:1	107183399	107191028	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035002}  [Source:UniProtKB/TrEMBL;Acc:F7IIE7]
ENSCJAG00000001465	NOVEL	protein_coding	ENSCJAG00000001465	chromosome:C_jacchus3.2.1:2:1:204313951:1	56048857	56057186	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002614}  [Source:UniProtKB/TrEMBL;Acc:F7I6T5]
ENSCJAG00000001468	KNOWN_BY_PROJECTION	protein_coding	ELFN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	56149195	56152383	R	extracellular leucine-rich repeat and fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:33154]
ENSCJAG00000001473	KNOWN	protein_coding	PSMG3	chromosome:C_jacchus3.2.1:2:1:204313951:1	56327979	56330343	D	Proteasome assembly chaperone 3 {ECO:0000313|EMBL:JAB03070.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002622}  [Source:UniProtKB/TrEMBL;Acc:F7I4J9]
ENSCJAG00000018851	KNOWN	protein_coding	ENSCJAG00000018851	chromosome:C_jacchus3.2.1:5:1:159171411:1	107191078	107196148	D	39S ribosomal protein L27, mitochondrial {ECO:0000313|EMBL:JAB42765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035011}  [Source:UniProtKB/TrEMBL;Acc:F7IG40]
ENSCJAG00000010927	KNOWN	protein_coding	ZNF414	chromosome:C_jacchus3.2.1:22:1:49145316:1	8185776	8189292	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020180}; Zinc finger protein 414 isoform 1 {ECO:0000313|EMBL:JAB16571.1}  [Source:UniProtKB/TrEMBL;Acc:F7GAS8]
ENSCJAG00000018858	KNOWN_BY_PROJECTION	protein_coding	XYLT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	107204353	107211533	R	xylosyltransferase II [Source:HGNC Symbol;Acc:HGNC:15517]
ENSCJAG00000016831	KNOWN_BY_PROJECTION	protein_coding	WDR66	chromosome:C_jacchus3.2.1:9:1:124281992:1	112846519	112935606	D	WD repeat domain 66 [Source:HGNC Symbol;Acc:HGNC:28506]
ENSCJAG00000012063	KNOWN_BY_PROJECTION	protein_coding	RSBN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	149782566	149842336	R	round spermatid basic protein 1 [Source:HGNC Symbol;Acc:HGNC:25642]
ENSCJAG00000018867	KNOWN_BY_PROJECTION	protein_coding	TMEM92	chromosome:C_jacchus3.2.1:5:1:159171411:1	107292653	107297564	R	transmembrane protein 92 [Source:HGNC Symbol;Acc:HGNC:26579]
ENSCJAG00000006847	KNOWN_BY_PROJECTION	protein_coding	PPP1R9B	chromosome:C_jacchus3.2.1:5:1:159171411:1	107385060	107402552	D	protein phosphatase 1, regulatory subunit 9B [Source:HGNC Symbol;Acc:HGNC:9298]
ENSCJAG00000016809	KNOWN	protein_coding	BCL7A	chromosome:C_jacchus3.2.1:9:1:124281992:1	112952638	112997858	D	B-cell CLL/lymphoma 7 protein family member A isoform a {ECO:0000313|EMBL:JAB36900.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030952}  [Source:UniProtKB/TrEMBL;Acc:F6W7A2]
ENSCJAG00000015352	KNOWN	protein_coding	SYNCRIP	chromosome:C_jacchus3.2.1:4:1:171630274:1	84567954	84599387	R	Heterogeneous nuclear ribonucleoprotein Q isoform 3 {ECO:0000313|EMBL:JAB39981.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028354}  [Source:UniProtKB/TrEMBL;Acc:F7A621]
ENSCJAG00000021277	KNOWN_BY_PROJECTION	protein_coding	SUMF2	chromosome:C_jacchus3.2.1:17:1:74750902:1	74579117	74599911	D	sulfatase modifying factor 2 [Source:HGNC Symbol;Acc:HGNC:20415]
ENSCJAG00000001475	KNOWN_BY_PROJECTION	protein_coding	TMEM184A	chromosome:C_jacchus3.2.1:2:1:204313951:1	56343634	56356280	D	transmembrane protein 184A [Source:HGNC Symbol;Acc:HGNC:28797]
ENSCJAG00000008190	KNOWN	protein_coding	GPR26	chromosome:C_jacchus3.2.1:12:1:121768101:1	111599048	111620711	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015136}  [Source:UniProtKB/TrEMBL;Acc:F7DFJ4]
ENSCJAG00000001481	KNOWN	protein_coding	MAFK	chromosome:C_jacchus3.2.1:2:1:204313951:1	56363234	56374231	R	Transcription factor MafK {ECO:0000313|EMBL:JAB03406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002638}  [Source:UniProtKB/TrEMBL;Acc:F7I4H4]
ENSCJAG00000006872	KNOWN_BY_PROJECTION	protein_coding	SAMD14	chromosome:C_jacchus3.2.1:5:1:159171411:1	107410995	107423351	D	sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]
ENSCJAG00000020340	NOVEL	protein_coding	ENSCJAG00000020340	chromosome:C_jacchus3.2.1:9:1:124281992:1	113033720	113050833	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037807}  [Source:UniProtKB/TrEMBL;Acc:F7BDZ5]
ENSCJAG00000008198	KNOWN_BY_PROJECTION	protein_coding	CPXM2	chromosome:C_jacchus3.2.1:12:1:121768101:1	111681428	111739681	R	carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
ENSCJAG00000006896	KNOWN_BY_PROJECTION	protein_coding	PDK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	107426497	107444540	R	pyruvate dehydrogenase kinase, isozyme 2 [Source:HGNC Symbol;Acc:HGNC:8810]
ENSCJAG00000001484	KNOWN_BY_PROJECTION	protein_coding	INTS1	chromosome:C_jacchus3.2.1:2:1:204313951:1	56401540	56436952	D	integrator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:24555]
ENSCJAG00000020352	KNOWN_BY_PROJECTION	protein_coding	IL31	chromosome:C_jacchus3.2.1:9:1:124281992:1	113081546	113084045	R	interleukin 31 [Source:HGNC Symbol;Acc:HGNC:19372]
ENSCJAG00000021293	KNOWN	protein_coding	MTMR3	chromosome:C_jacchus3.2.1:1:1:210400635:1	192772479	192883611	D	Myotubularin-related protein 3 isoform b {ECO:0000313|EMBL:JAB07466.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049729}  [Source:UniProtKB/TrEMBL;Acc:F6USC5]
ENSCJAG00000010285	KNOWN	protein_coding	CHST15	chromosome:C_jacchus3.2.1:12:1:121768101:1	111962185	112050109	R	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F7GVC4]
ENSCJAG00000021270	KNOWN	protein_coding	PHKG1	chromosome:C_jacchus3.2.1:17:1:74750902:1	74600824	74615524	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039595}  [Source:UniProtKB/TrEMBL;Acc:F7HEY1]
ENSCJAG00000020353	KNOWN_BY_PROJECTION	protein_coding	LRRC43	chromosome:C_jacchus3.2.1:9:1:124281992:1	113092580	113114146	D	leucine rich repeat containing 43 [Source:HGNC Symbol;Acc:HGNC:28562]
ENSCJAG00000010967	KNOWN_BY_PROJECTION	protein_coding	ADAMTS10	chromosome:C_jacchus3.2.1:22:1:49145316:1	8254157	8280222	R	ADAM metallopeptidase with thrombospondin type 1 motif, 10 [Source:HGNC Symbol;Acc:HGNC:13201]
ENSCJAG00000012633	KNOWN_BY_PROJECTION	protein_coding	OAT	chromosome:C_jacchus3.2.1:12:1:121768101:1	112365393	112380805	R	ornithine aminotransferase [Source:HGNC Symbol;Acc:HGNC:8091]
ENSCJAG00000011049	KNOWN_BY_PROJECTION	protein_coding	ZNF558	chromosome:C_jacchus3.2.1:22:1:49145316:1	8419728	8436831	R	zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
ENSCJAG00000007610	KNOWN_BY_PROJECTION	protein_coding	PRTFDC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	22405484	22500466	R	phosphoribosyl transferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23333]
ENSCJAG00000005626	NOVEL	pseudogene	ENSCJAG00000005626	chromosome:C_jacchus3.2.1:10:1:132174527:1	55509189	55509762	D	<no descrition>
ENSCJAG00000012107	KNOWN_BY_PROJECTION	protein_coding	PTPN22	chromosome:C_jacchus3.2.1:7:1:155834243:1	149843851	149900395	R	protein tyrosine phosphatase, non-receptor type 22 (lymphoid) [Source:HGNC Symbol;Acc:HGNC:9652]
ENSCJAG00000037045	KNOWN	protein_coding	C10H14ORF126	chromosome:C_jacchus3.2.1:10:1:132174527:1	55657985	55667713	R	Putative D-tyrosyl-tRNA(Tyr) deacylase 2 {ECO:0000313|EMBL:JAB09466.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010262}  [Source:UniProtKB/TrEMBL;Acc:F7CPR7]
ENSCJAG00000020365	KNOWN_BY_PROJECTION	protein_coding	B3GNT4	chromosome:C_jacchus3.2.1:9:1:124281992:1	113114412	113118431	D	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:15683]
ENSCJAG00000007634	NOVEL	protein_coding	ENSCJAG00000007634	chromosome:C_jacchus3.2.1:7:1:155834243:1	22418893	22419838	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014150}  [Source:UniProtKB/TrEMBL;Acc:F7IE80]
ENSCJAG00000005582	KNOWN	protein_coding	NUBPL	chromosome:C_jacchus3.2.1:10:1:132174527:1	55835207	56118205	D	Iron-sulfur protein NUBPL isoform 1 {ECO:0000313|EMBL:JAB09666.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010198}  [Source:UniProtKB/TrEMBL;Acc:F6X0B1]
ENSCJAG00000007598	KNOWN	protein_coding	ENKUR	chromosome:C_jacchus3.2.1:7:1:155834243:1	22531401	22562910	R	Enkurin isoform 1 {ECO:0000313|EMBL:JAB19285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014107}  [Source:UniProtKB/TrEMBL;Acc:F7IJ15]
ENSCJAG00000020367	KNOWN	protein_coding	DIABLO	chromosome:C_jacchus3.2.1:9:1:124281992:1	113118557	113142345	R	Diablo homolog, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB08555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037861}  [Source:UniProtKB/TrEMBL;Acc:F6ZCF6]
ENSCJAG00000007593	KNOWN	protein_coding	THNSL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	22569540	22575140	D	Threonine synthase-like 1 {ECO:0000313|EMBL:JAB30412.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014092}  [Source:UniProtKB/TrEMBL;Acc:F7HKB5]
ENSCJAG00000010297	KNOWN_BY_PROJECTION	protein_coding	HORMAD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	192956225	193037439	D	HORMA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28383]
ENSCJAG00000012614	KNOWN	protein_coding	LHPP	chromosome:C_jacchus3.2.1:12:1:121768101:1	112421527	112572616	D	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase isoform 1 {ECO:0000313|EMBL:JAB05995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023111}  [Source:UniProtKB/TrEMBL;Acc:F7I464]
ENSCJAG00000011069	KNOWN_BY_PROJECTION	protein_coding	MUC16	chromosome:C_jacchus3.2.1:22:1:49145316:1	8462244	8535452	R	mucin 16, cell surface associated [Source:HGNC Symbol;Acc:HGNC:15582]
ENSCJAG00000007574	KNOWN	protein_coding	GPR158	chromosome:C_jacchus3.2.1:7:1:155834243:1	22720971	23214824	D	Putative G-protein coupled receptor 158 {ECO:0000313|EMBL:JAB25726.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014079}  [Source:UniProtKB/TrEMBL;Acc:F7HR18]
ENSCJAG00000020370	KNOWN	protein_coding	VPS33A	chromosome:C_jacchus3.2.1:9:1:124281992:1	113146589	113174827	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037866}; Vacuolar protein sorting-associated protein 33A {ECO:0000313|EMBL:JAB08821.1}  [Source:UniProtKB/TrEMBL;Acc:F6ZCB1]
ENSCJAG00000010302	KNOWN_BY_PROJECTION	protein_coding	LIF	chromosome:C_jacchus3.2.1:1:1:210400635:1	193103947	193107180	R	leukemia inhibitory factor [Source:HGNC Symbol;Acc:HGNC:6596]
ENSCJAG00000022125	NOVEL	pseudogene	ENSCJAG00000022125	chromosome:C_jacchus3.2.1:7:1:155834243:1	22995613	22996212	R	<no descrition>
ENSCJAG00000010318	NOVEL	pseudogene	ENSCJAG00000010318	chromosome:C_jacchus3.2.1:1:1:210400635:1	193106635	193107345	D	<no descrition>
ENSCJAG00000007590	NOVEL	pseudogene	ENSCJAG00000007590	chromosome:C_jacchus3.2.1:7:1:155834243:1	23041840	23042711	D	<no descrition>
ENSCJAG00000010320	KNOWN_BY_PROJECTION	protein_coding	OSM	chromosome:C_jacchus3.2.1:1:1:210400635:1	193125538	193128500	R	oncostatin M [Source:HGNC Symbol;Acc:HGNC:8506]
ENSCJAG00000001532	KNOWN_BY_PROJECTION	protein_coding	MICALL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	56449734	56474325	D	MICAL-like 2 [Source:HGNC Symbol;Acc:HGNC:29672]
ENSCJAG00000012260	NOVEL	pseudogene	ENSCJAG00000012260	chromosome:C_jacchus3.2.1:X:1:142054208:1	46169315	46169478	D	<no descrition>
ENSCJAG00000006922	KNOWN	protein_coding	ITGA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	107449404	107485577	R	Integrin alpha-3 isoform b {ECO:0000313|EMBL:JAB28358.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012925}  [Source:UniProtKB/TrEMBL;Acc:F6S164]
ENSCJAG00000031726	NOVEL	pseudogene	ENSCJAG00000031726	chromosome:C_jacchus3.2.1:2:1:204313951:1	56549824	56550555	R	<no descrition>
ENSCJAG00000012261	KNOWN_BY_PROJECTION	protein_coding	CDK16	chromosome:C_jacchus3.2.1:X:1:142054208:1	46187976	46193307	D	cyclin-dependent kinase 16 [Source:HGNC Symbol;Acc:HGNC:8749]
ENSCJAG00000015773	KNOWN_BY_PROJECTION	protein_coding	UNCX	chromosome:C_jacchus3.2.1:2:1:204313951:1	56683029	56684154	R	UNC homeobox [Source:HGNC Symbol;Acc:HGNC:33194]
ENSCJAG00000005538	KNOWN	protein_coding	ARHGAP5	chromosome:C_jacchus3.2.1:10:1:132174527:1	56358780	56439000	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010169}  [Source:UniProtKB/TrEMBL;Acc:F6XPA6]
ENSCJAG00000015776	KNOWN	protein_coding	ZFAND2A	chromosome:C_jacchus3.2.1:2:1:204313951:1	56765228	56773500	D	AN1-type zinc finger protein 2A {ECO:0000313|EMBL:JAB01707.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029041}  [Source:UniProtKB/TrEMBL;Acc:F7HM30]
ENSCJAG00000012610	KNOWN	protein_coding	FAM53B	chromosome:C_jacchus3.2.1:12:1:121768101:1	112580882	112636479	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023081}  [Source:UniProtKB/TrEMBL;Acc:F7IBA2]
ENSCJAG00000015780	KNOWN_BY_PROJECTION	protein_coding	C7orf50	chromosome:C_jacchus3.2.1:2:1:204313951:1	56803439	56914510	D	chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421]
ENSCJAG00000012593	KNOWN_BY_PROJECTION	protein_coding	METTL10	chromosome:C_jacchus3.2.1:12:1:121768101:1	112719125	112742997	R	methyltransferase like 10 [Source:HGNC Symbol;Acc:HGNC:33787]
ENSCJAG00000022981	KNOWN	protein_coding	GPER1	chromosome:C_jacchus3.2.1:2:1:204313951:1	56834310	56839052	R	G-protein coupled estrogen receptor 1 {ECO:0000313|EMBL:JAB26731.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041536}  [Source:UniProtKB/TrEMBL;Acc:F7G601]
ENSCJAG00000015784	KNOWN_BY_PROJECTION	protein_coding	GPR146	chromosome:C_jacchus3.2.1:2:1:204313951:1	56864826	56866125	R	G protein-coupled receptor 146 [Source:HGNC Symbol;Acc:HGNC:21718]
ENSCJAG00000006237	KNOWN_BY_PROJECTION	protein_coding	OR7G3	chromosome:C_jacchus3.2.1:22:1:49145316:1	8709913	8730004	R	olfactory receptor, family 7, subfamily G, member 3 [Source:HGNC Symbol;Acc:HGNC:8467]
ENSCJAG00000020871	NOVEL	protein_coding	ENSCJAG00000020871	chromosome:C_jacchus3.2.1:22:1:49145316:1	8713687	8727203	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003631}  [Source:UniProtKB/TrEMBL;Acc:F7H9U0]
ENSCJAG00000007698	NOVEL	protein_coding	ENSCJAG00000007698	chromosome:C_jacchus3.2.1:22:1:49145316:1	8730111	8730753	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042360}  [Source:UniProtKB/TrEMBL;Acc:F6V6G3]
ENSCJAG00000015785	KNOWN_BY_PROJECTION	protein_coding	CYP2W1	chromosome:C_jacchus3.2.1:2:1:204313951:1	56921925	56927329	R	cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
ENSCJAG00000012581	KNOWN	protein_coding	FAM175B	chromosome:C_jacchus3.2.1:12:1:121768101:1	112753219	112783143	D	BRISC complex subunit Abro1 {ECO:0000313|EMBL:JAB09397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023038}  [Source:UniProtKB/TrEMBL;Acc:F7IG43]
ENSCJAG00000006214	KNOWN_BY_PROJECTION	protein_coding	ZNF317	chromosome:C_jacchus3.2.1:22:1:49145316:1	8742310	8762881	D	zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
ENSCJAG00000007540	KNOWN_BY_PROJECTION	protein_coding	MYO3A	chromosome:C_jacchus3.2.1:7:1:155834243:1	23559665	23780479	D	myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
ENSCJAG00000038117	KNOWN	protein_coding	COX19	chromosome:C_jacchus3.2.1:2:1:204313951:1	56936673	56943482	D	Cytochrome c oxidase assembly protein COX19 {ECO:0000313|EMBL:JAB02884.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029145}  [Source:UniProtKB/TrEMBL;Acc:F7IAC1]
ENSCJAG00000015404	NOVEL	pseudogene	ENSCJAG00000015404	chromosome:C_jacchus3.2.1:4:1:171630274:1	84613950	84614478	D	<no descrition>
ENSCJAG00000015409	NOVEL	pseudogene	ENSCJAG00000015409	chromosome:C_jacchus3.2.1:4:1:171630274:1	84619642	84620383	R	<no descrition>
ENSCJAG00000031597	NOVEL	pseudogene	ENSCJAG00000031597	chromosome:C_jacchus3.2.1:4:1:171630274:1	84622071	84622690	R	<no descrition>
ENSCJAG00000015811	KNOWN_BY_PROJECTION	protein_coding	ADAP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	56936695	57014671	D	ArfGAP with dual PH domains 1 [Source:HGNC Symbol;Acc:HGNC:16486]
ENSCJAG00000033185	NOVEL	protein_coding	ENSCJAG00000033185	chromosome:C_jacchus3.2.1:4:1:171630274:1	85138318	85138807	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012542}  [Source:UniProtKB/TrEMBL;Acc:F7GXR7]
ENSCJAG00000007205	NOVEL	pseudogene	ENSCJAG00000007205	chromosome:C_jacchus3.2.1:4:1:171630274:1	86126689	86126936	R	<no descrition>
ENSCJAG00000012294	KNOWN_BY_PROJECTION	protein_coding	USP11	chromosome:C_jacchus3.2.1:X:1:142054208:1	46197258	46211972	D	ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]
ENSCJAG00000005474	NOVEL	protein_coding	ENSCJAG00000005474	chromosome:C_jacchus3.2.1:10:1:132174527:1	56837115	57158544	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010092}  [Source:UniProtKB/TrEMBL;Acc:F7AB71]
ENSCJAG00000000626	KNOWN_BY_PROJECTION	protein_coding	CGA	chromosome:C_jacchus3.2.1:4:1:171630274:1	86146974	86163428	R	glycoprotein hormones, alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:1885]
ENSCJAG00000012160	KNOWN_BY_PROJECTION	protein_coding	BCL2L15	chromosome:C_jacchus3.2.1:7:1:155834243:1	149908809	149919896	R	BCL2-like 15 [Source:HGNC Symbol;Acc:HGNC:33624]
ENSCJAG00000032811	NOVEL	protein_coding	ENSCJAG00000032811	chromosome:C_jacchus3.2.1:22:1:49145316:1	8789681	8807047	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7BNL8]
ENSCJAG00000010025	NOVEL	pseudogene	ENSCJAG00000010025	chromosome:C_jacchus3.2.1:22:1:49145316:1	8790240	8790514	R	<no descrition>
ENSCJAG00000021267	KNOWN	protein_coding	ENSCJAG00000021267	chromosome:C_jacchus3.2.1:17:1:74750902:1	74629892	74635017	R	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial {ECO:0000313|EMBL:JAB50356.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039588}  [Source:UniProtKB/TrEMBL;Acc:F7HEZ2]
ENSCJAG00000021262	KNOWN_BY_PROJECTION	protein_coding	SEPT14	chromosome:C_jacchus3.2.1:17:1:74750902:1	74668640	74713516	D	septin 14 [Source:HGNC Symbol;Acc:HGNC:33280]
ENSCJAG00000000634	KNOWN_BY_PROJECTION	protein_coding	ZNF292	chromosome:C_jacchus3.2.1:4:1:171630274:1	86204308	86308920	D	zinc finger protein 292 [Source:HGNC Symbol;Acc:HGNC:18410]
ENSCJAG00000012178	KNOWN	protein_coding	AP4B1	chromosome:C_jacchus3.2.1:7:1:155834243:1	149926487	149936533	R	AP-4 complex subunit beta-1 isoform 1 {ECO:0000313|EMBL:JAB09548.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022386}  [Source:UniProtKB/TrEMBL;Acc:F6XLI4]
ENSCJAG00000006203	KNOWN_BY_PROJECTION	protein_coding	ZNF699	chromosome:C_jacchus3.2.1:22:1:49145316:1	8826175	8835328	R	zinc finger protein 699 [Source:HGNC Symbol;Acc:HGNC:24750]
ENSCJAG00000033650	NOVEL	protein_coding	ENSCJAG00000033650	scaffold:C_jacchus3.2.1:GL285588.1:1:23099:1	13708	19559	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045795}  [Source:UniProtKB/TrEMBL;Acc:H9KY56]
ENSCJAG00000010328	KNOWN	protein_coding	GATSL3	chromosome:C_jacchus3.2.1:1:1:210400635:1	193149805	193154336	R	GATS-like protein 3 {ECO:0000313|EMBL:JAB08395.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019048}  [Source:UniProtKB/TrEMBL;Acc:F6TTG3]
ENSCJAG00000037261	NOVEL	protein_coding	ENSCJAG00000037261	chromosome:C_jacchus3.2.1:10:1:132174527:1	57146550	57150868	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010069}  [Source:UniProtKB/TrEMBL;Acc:F7BCN2]
ENSCJAG00000008060	NOVEL	protein_coding	ENSCJAG00000008060	scaffold:C_jacchus3.2.1:GL286659.1:1:17109:1	5274	10377	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014892}  [Source:UniProtKB/TrEMBL;Acc:H9KWH2]
ENSCJAG00000015829	KNOWN	protein_coding	GET4	chromosome:C_jacchus3.2.1:2:1:204313951:1	57023668	57038809	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029159}  [Source:UniProtKB/TrEMBL;Acc:F7I7Z7]
ENSCJAG00000003076	NOVEL	protein_coding	ENSCJAG00000003076	scaffold:C_jacchus3.2.1:GL285225.1:1:9093:1	433	2550	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005583}  [Source:UniProtKB/TrEMBL;Acc:H9KVZ0]
ENSCJAG00000015835	KNOWN_BY_PROJECTION	protein_coding	SUN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	57042198	57083364	R	Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
ENSCJAG00000005437	KNOWN_BY_PROJECTION	protein_coding	NPAS3	chromosome:C_jacchus3.2.1:10:1:132174527:1	57279592	58156191	D	neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
ENSCJAG00000033558	NOVEL	pseudogene	ENSCJAG00000033558	scaffold:C_jacchus3.2.1:GL286547.1:1:40020:1	13953	14843	R	<no descrition>
ENSCJAG00000031303	NOVEL	pseudogene	ENSCJAG00000031303	scaffold:C_jacchus3.2.1:GL286547.1:1:40020:1	19745	20688	R	<no descrition>
ENSCJAG00000021955	NOVEL	protein_coding	ENSCJAG00000021955	scaffold:C_jacchus3.2.1:GL286547.1:1:40020:1	25807	26887	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ5]
ENSCJAG00000010347	KNOWN	protein_coding	TBC1D10A	chromosome:C_jacchus3.2.1:1:1:210400635:1	193157051	193195101	R	TBC1 domain family member 10A isoform 2 {ECO:0000313|EMBL:JAB12236.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019099}  [Source:UniProtKB/TrEMBL;Acc:F6SJZ9]
ENSCJAG00000021487	NOVEL	protein_coding	ENSCJAG00000021487	scaffold:C_jacchus3.2.1:GL286765.1:1:12076:1	4828	6873	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040010}  [Source:UniProtKB/TrEMBL;Acc:H9KXM7]
ENSCJAG00000035294	NOVEL	protein_coding	ENSCJAG00000035294	chromosome:C_jacchus3.2.1:18:1:47448759:1	28819	29381	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046755}  [Source:UniProtKB/TrEMBL;Acc:F7I3L3]
ENSCJAG00000012212	KNOWN_BY_PROJECTION	protein_coding	DCLRE1B	chromosome:C_jacchus3.2.1:7:1:155834243:1	149936787	149944359	D	DNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]
ENSCJAG00000019886	NOVEL	pseudogene	ENSCJAG00000019886	chromosome:C_jacchus3.2.1:18:1:47448759:1	45660	46810	R	<no descrition>
ENSCJAG00000019887	NOVEL	pseudogene	ENSCJAG00000019887	chromosome:C_jacchus3.2.1:18:1:47448759:1	87977	88350	R	<no descrition>
ENSCJAG00000019888	NOVEL	pseudogene	ENSCJAG00000019888	chromosome:C_jacchus3.2.1:18:1:47448759:1	128745	129467	R	<no descrition>
ENSCJAG00000015861	NOVEL	pseudogene	ENSCJAG00000015861	chromosome:C_jacchus3.2.1:2:1:204313951:1	57129645	57130580	D	<no descrition>
ENSCJAG00000006188	NOVEL	protein_coding	ENSCJAG00000006188	chromosome:C_jacchus3.2.1:22:1:49145316:1	8906600	8911047	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011370}  [Source:UniProtKB/TrEMBL;Acc:F7I6D3]
ENSCJAG00000006176	KNOWN_BY_PROJECTION	protein_coding	ZNF266	chromosome:C_jacchus3.2.1:22:1:49145316:1	8951833	8974471	R	zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
ENSCJAG00000019892	KNOWN_BY_PROJECTION	protein_coding	REG4	chromosome:C_jacchus3.2.1:18:1:47448759:1	141953	158543	D	regenerating islet-derived family, member 4 [Source:HGNC Symbol;Acc:HGNC:22977]
ENSCJAG00000019898	NOVEL	protein_coding	ENSCJAG00000019898	chromosome:C_jacchus3.2.1:18:1:47448759:1	162383	163781	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052211}  [Source:UniProtKB/TrEMBL;Acc:F7ILI8]
ENSCJAG00000006158	NOVEL	protein_coding	ENSCJAG00000006158	chromosome:C_jacchus3.2.1:22:1:49145316:1	8977629	8981410	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011335}  [Source:UniProtKB/TrEMBL;Acc:F7IB62]
ENSCJAG00000020372	KNOWN_BY_PROJECTION	protein_coding	CLIP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	113179297	113295034	R	CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
ENSCJAG00000006154	KNOWN_BY_PROJECTION	protein_coding	ZNF560	chromosome:C_jacchus3.2.1:22:1:49145316:1	8986780	9016743	R	zinc finger protein 560 [Source:HGNC Symbol;Acc:HGNC:26484]
ENSCJAG00000010370	KNOWN	protein_coding	SF3A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	193204567	193228660	R	Splicing factor 3A subunit 1 isoform 1 {ECO:0000313|EMBL:JAB03414.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019179}  [Source:UniProtKB/TrEMBL;Acc:F6QQD6]
ENSCJAG00000019899	KNOWN_BY_PROJECTION	protein_coding	HMGCS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	181097	208954	D	3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:5008]
ENSCJAG00000000647	KNOWN_BY_PROJECTION	protein_coding	GJB7	chromosome:C_jacchus3.2.1:4:1:171630274:1	86332684	86363325	R	gap junction protein, beta 7, 25kDa [Source:HGNC Symbol;Acc:HGNC:16690]
ENSCJAG00000000648	KNOWN	protein_coding	C4H6ORF162	chromosome:C_jacchus3.2.1:4:1:171630274:1	86362859	86375074	D	UPF0708 protein C6orf162 {ECO:0000313|EMBL:JAB26279.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001107}  [Source:UniProtKB/TrEMBL;Acc:F6W3X9]
ENSCJAG00000034064	KNOWN_BY_PROJECTION	protein_coding	PDLIM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	107505075	107506110	D	PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
ENSCJAG00000033292	NOVEL	protein_coding	ENSCJAG00000033292	chromosome:C_jacchus3.2.1:7:1:155834243:1	23778945	23786568	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045400}  [Source:UniProtKB/TrEMBL;Acc:F6RLK9]
ENSCJAG00000000651	KNOWN_BY_PROJECTION	protein_coding	C6orf163	chromosome:C_jacchus3.2.1:4:1:171630274:1	86379261	86408139	D	chromosome 6 open reading frame 163 [Source:HGNC Symbol;Acc:HGNC:21403]
ENSCJAG00000006145	KNOWN_BY_PROJECTION	protein_coding	ZNF426	chromosome:C_jacchus3.2.1:22:1:49145316:1	9038323	9055718	R	zinc finger protein 426 [Source:HGNC Symbol;Acc:HGNC:20725]
ENSCJAG00000012221	KNOWN	protein_coding	HIPK1	chromosome:C_jacchus3.2.1:7:1:155834243:1	149959059	150009880	D	Homeodomain-interacting protein kinase 1 isoform 1 {ECO:0000313|EMBL:JAB02133.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024450}  [Source:UniProtKB/TrEMBL;Acc:F7EHB5]
ENSCJAG00000019916	KNOWN	protein_coding	PHGDH	chromosome:C_jacchus3.2.1:18:1:47448759:1	212795	243608	R	D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:JAB04385.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037040}  [Source:UniProtKB/TrEMBL;Acc:F6YJM1]
ENSCJAG00000007478	KNOWN	protein_coding	GAD2	chromosome:C_jacchus3.2.1:7:1:155834243:1	23784261	23878967	D	Glutamate decarboxylase 2 {ECO:0000313|EMBL:JAB15251.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014009}  [Source:UniProtKB/TrEMBL;Acc:F7I4W5]
ENSCJAG00000036461	NOVEL	protein_coding	ENSCJAG00000036461	chromosome:C_jacchus3.2.1:4:1:171630274:1	86457518	86571326	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001184}  [Source:UniProtKB/TrEMBL;Acc:F6UC20]
ENSCJAG00000037640	NOVEL	protein_coding	ENSCJAG00000037640	chromosome:C_jacchus3.2.1:22:1:49145316:1	9046267	9057144	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052483}  [Source:UniProtKB/TrEMBL;Acc:F7I026]
ENSCJAG00000006139	KNOWN	protein_coding	ZNF121	chromosome:C_jacchus3.2.1:22:1:49145316:1	9073185	9075635	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011268}; Zinc finger protein 121 {ECO:0000313|EMBL:JAB07977.1}  [Source:UniProtKB/TrEMBL;Acc:F7IN04]
ENSCJAG00000006990	KNOWN	protein_coding	DLX3	chromosome:C_jacchus3.2.1:5:1:159171411:1	107535440	107540933	D	Homeobox protein DLX-3 {ECO:0000313|EMBL:JAB19739.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012957}  [Source:UniProtKB/TrEMBL;Acc:F6REF2]
ENSCJAG00000007000	KNOWN	protein_coding	DLX4	chromosome:C_jacchus3.2.1:5:1:159171411:1	107558464	107563298	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012969}  [Source:UniProtKB/TrEMBL;Acc:F6RDB6]
ENSCJAG00000006113	NOVEL	protein_coding	ENSCJAG00000006113	chromosome:C_jacchus3.2.1:22:1:49145316:1	9126816	9172637	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010137}  [Source:UniProtKB/TrEMBL;Acc:F6YT75]
ENSCJAG00000012573	KNOWN	protein_coding	ZRANB1	chromosome:C_jacchus3.2.1:12:1:121768101:1	112866619	112911468	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023013}  [Source:UniProtKB/TrEMBL;Acc:F7III3]
ENSCJAG00000000688	NOVEL	protein_coding	ENSCJAG00000000688	chromosome:C_jacchus3.2.1:4:1:171630274:1	86544460	86545231	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001186}  [Source:UniProtKB/TrEMBL;Acc:F6UBX3]
ENSCJAG00000010413	KNOWN_BY_PROJECTION	protein_coding	CCDC157	chromosome:C_jacchus3.2.1:1:1:210400635:1	193235684	193246389	D	coiled-coil domain containing 157 [Source:HGNC Symbol;Acc:HGNC:33854]
ENSCJAG00000007010	KNOWN_BY_PROJECTION	protein_coding	TAC4	chromosome:C_jacchus3.2.1:5:1:159171411:1	107689320	107699522	D	tachykinin 4 (hemokinin) [Source:HGNC Symbol;Acc:HGNC:16641]
ENSCJAG00000032158	NOVEL	protein_coding	ENSCJAG00000032158	chromosome:C_jacchus3.2.1:X:1:142054208:1	66214498	66215353	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046622}  [Source:UniProtKB/TrEMBL;Acc:F7IS72]
ENSCJAG00000037585	KNOWN_BY_PROJECTION	protein_coding	SLC16A2	chromosome:C_jacchus3.2.1:X:1:142054208:1	66276049	66287134	D	solute carrier family 16, member 2 (thyroid hormone transporter) [Source:HGNC Symbol;Acc:HGNC:10923]
ENSCJAG00000013228	NOVEL	pseudogene	ENSCJAG00000013228	chromosome:C_jacchus3.2.1:X:1:142054208:1	66351158	66352949	R	<no descrition>
ENSCJAG00000019925	NOVEL	protein_coding	ENSCJAG00000019925	chromosome:C_jacchus3.2.1:18:1:47448759:1	263633	264663	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037043}  [Source:UniProtKB/TrEMBL;Acc:F6YJG3]
ENSCJAG00000010605	KNOWN	protein_coding	GAL3ST1	chromosome:C_jacchus3.2.1:1:1:210400635:1	193248711	193519685	R	Galactosylceramide sulfotransferase {ECO:0000313|EMBL:JAB12650.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051441}  [Source:UniProtKB/TrEMBL;Acc:F7BJM8]
ENSCJAG00000013235	KNOWN	protein_coding	RLIM	chromosome:C_jacchus3.2.1:X:1:142054208:1	66372976	66397963	R	E3 ubiquitin-protein ligase RLIM {ECO:0000313|EMBL:JAB07711.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024330}  [Source:UniProtKB/TrEMBL;Acc:F7H8Q8]
ENSCJAG00000036299	KNOWN	protein_coding	SLC35A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	86566088	86599506	D	CMP-sialic acid transporter isoform a {ECO:0000313|EMBL:JAB09678.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001139}  [Source:UniProtKB/TrEMBL;Acc:L7N0V6]
ENSCJAG00000012539	KNOWN	protein_coding	CTBP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	112913771	113087091	R	C-terminal-binding protein 2 isoform 1 {ECO:0000313|EMBL:JAB09142.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022995}  [Source:UniProtKB/TrEMBL;Acc:F7I3J2]
ENSCJAG00000019928	NOVEL	protein_coding	ENSCJAG00000019928	chromosome:C_jacchus3.2.1:18:1:47448759:1	339386	341681	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037045}  [Source:UniProtKB/TrEMBL;Acc:F6YJD7]
ENSCJAG00000007035	NOVEL	protein_coding	ENSCJAG00000007035	chromosome:C_jacchus3.2.1:5:1:159171411:1	107690034	107691397	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013044}  [Source:UniProtKB/TrEMBL;Acc:F7AJB9]
ENSCJAG00000000235	KNOWN_BY_PROJECTION	protein_coding	KIAA2022	chromosome:C_jacchus3.2.1:X:1:142054208:1	66450442	66463225	R	KIAA2022 [Source:HGNC Symbol;Acc:HGNC:29433]
ENSCJAG00000019929	NOVEL	pseudogene	ENSCJAG00000019929	chromosome:C_jacchus3.2.1:18:1:47448759:1	354125	356500	R	<no descrition>
ENSCJAG00000012531	NOVEL	pseudogene	ENSCJAG00000012531	chromosome:C_jacchus3.2.1:12:1:121768101:1	113321296	113322214	D	<no descrition>
ENSCJAG00000012522	KNOWN_BY_PROJECTION	protein_coding	TEX36	chromosome:C_jacchus3.2.1:12:1:121768101:1	113594351	113620100	R	testis expressed 36 [Source:HGNC Symbol;Acc:HGNC:31653]
ENSCJAG00000006108	KNOWN_BY_PROJECTION	protein_coding	ZNF846	chromosome:C_jacchus3.2.1:22:1:49145316:1	9181490	9292438	R	zinc finger protein 846 [Source:HGNC Symbol;Acc:HGNC:27260]
ENSCJAG00000006105	KNOWN	protein_coding	FBXL12	chromosome:C_jacchus3.2.1:22:1:49145316:1	9191978	9207539	R	F-box/LRR-repeat protein 12 {ECO:0000313|EMBL:JAB02666.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011223}  [Source:UniProtKB/TrEMBL;Acc:F7ISP1]
ENSCJAG00000007037	KNOWN_BY_PROJECTION	protein_coding	KAT7	chromosome:C_jacchus3.2.1:5:1:159171411:1	107709166	107741884	R	K(lysine) acetyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:17016]
ENSCJAG00000006097	KNOWN	protein_coding	UBL5	chromosome:C_jacchus3.2.1:22:1:49145316:1	9214316	9216918	D	Ubiquitin-like protein 5 {ECO:0000313|EMBL:JAB08124.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011214}  [Source:UniProtKB/TrEMBL;Acc:F7ISQ0]
ENSCJAG00000006079	KNOWN_BY_PROJECTION	protein_coding	PIN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	9221723	9236937	D	peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Source:HGNC Symbol;Acc:HGNC:8988]
ENSCJAG00000016979	KNOWN	protein_coding	ABCB7	chromosome:C_jacchus3.2.1:X:1:142054208:1	66825155	66966080	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031337}  [Source:UniProtKB/TrEMBL;Acc:F7HW93]
ENSCJAG00000012481	KNOWN	protein_coding	EDRF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	113653312	113701377	D	Erythroid differentiation-related factor 1 isoform 2 {ECO:0000313|EMBL:JAB01855.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049740}  [Source:UniProtKB/TrEMBL;Acc:F6UR39]
ENSCJAG00000010447	KNOWN	protein_coding	SEC14L2	chromosome:C_jacchus3.2.1:1:1:210400635:1	193269753	193295919	D	SEC14-like protein 2 isoform 1 {ECO:0000313|EMBL:JAB03752.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042957}  [Source:UniProtKB/TrEMBL;Acc:F6V2N7]
ENSCJAG00000005424	KNOWN	protein_coding	EGLN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	58283080	58315231	R	Egl nine homolog 3 {ECO:0000313|EMBL:JAB03549.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050707}  [Source:UniProtKB/TrEMBL;Acc:F7EWN1]
ENSCJAG00000019931	KNOWN_BY_PROJECTION	protein_coding	NOTCH2	chromosome:C_jacchus3.2.1:18:1:47448759:1	371330	496668	R	notch 2 [Source:HGNC Symbol;Acc:HGNC:7882]
ENSCJAG00000006061	KNOWN	protein_coding	OLFM2	chromosome:C_jacchus3.2.1:22:1:49145316:1	9241721	9322423	R	Noelin-2 {ECO:0000313|EMBL:JAB04211.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011166}  [Source:UniProtKB/TrEMBL;Acc:F7HZJ8]
ENSCJAG00000001527	KNOWN_BY_PROJECTION	protein_coding	DNAAF5	chromosome:C_jacchus3.2.1:2:1:204313951:1	57365228	57421286	R	dynein, axonemal, assembly factor 5 [Source:HGNC Symbol;Acc:HGNC:26013]
ENSCJAG00000005421	NOVEL	protein_coding	ENSCJAG00000005421	chromosome:C_jacchus3.2.1:10:1:132174527:1	58319696	58320207	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049142}  [Source:UniProtKB/TrEMBL;Acc:F7B146]
ENSCJAG00000012390	NOVEL	pseudogene	ENSCJAG00000012390	chromosome:C_jacchus3.2.1:X:1:142054208:1	46313546	46314345	D	<no descrition>
ENSCJAG00000007066	KNOWN_BY_PROJECTION	protein_coding	FAM117A	chromosome:C_jacchus3.2.1:5:1:159171411:1	107747585	107825477	D	family with sequence similarity 117, member A [Source:HGNC Symbol;Acc:HGNC:24179]
ENSCJAG00000005416	NOVEL	protein_coding	ENSCJAG00000005416	chromosome:C_jacchus3.2.1:10:1:132174527:1	58809143	58810816	R	Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673}  [Source:UniProtKB/TrEMBL;Acc:F7F6D3]
ENSCJAG00000033457	NOVEL	protein_coding	ENSCJAG00000033457	chromosome:C_jacchus3.2.1:2:1:204313951:1	57367457	57367864	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042916}  [Source:UniProtKB/TrEMBL;Acc:F6WRZ7]
ENSCJAG00000012396	KNOWN_BY_PROJECTION	protein_coding	ZNF157	chromosome:C_jacchus3.2.1:X:1:142054208:1	46346104	46387518	D	zinc finger protein 157 [Source:HGNC Symbol;Acc:HGNC:12942]
ENSCJAG00000005412	KNOWN_BY_PROJECTION	protein_coding	SPTSSA	chromosome:C_jacchus3.2.1:10:1:132174527:1	58812093	58836343	R	serine palmitoyltransferase, small subunit A [Source:HGNC Symbol;Acc:HGNC:20361]
ENSCJAG00000012415	KNOWN_BY_PROJECTION	protein_coding	ZNF41	chromosome:C_jacchus3.2.1:X:1:142054208:1	46415625	46424701	R	zinc finger protein 41 [Source:HGNC Symbol;Acc:HGNC:13107]
ENSCJAG00000005391	KNOWN	protein_coding	EAPP	chromosome:C_jacchus3.2.1:10:1:132174527:1	58893431	58913447	R	E2F-associated phosphoprotein {ECO:0000313|EMBL:JAB05597.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009877}  [Source:UniProtKB/TrEMBL;Acc:F7F6H8]
ENSCJAG00000034617	KNOWN	protein_coding	PRKAR1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	57420615	57603030	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045253}; cAMP-dependent protein kinase type I-beta regulatory subunit {ECO:0000313|EMBL:JAB06767.1}  [Source:UniProtKB/TrEMBL;Acc:F6QGT4]
ENSCJAG00000021767	NOVEL	pseudogene	ENSCJAG00000021767	chromosome:C_jacchus3.2.1:18:1:47448759:1	610551	611482	R	<no descrition>
ENSCJAG00000007458	KNOWN_BY_PROJECTION	protein_coding	APBB1IP	chromosome:C_jacchus3.2.1:7:1:155834243:1	23990639	24159694	D	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:17379]
ENSCJAG00000019953	KNOWN	protein_coding	SEC22B	chromosome:C_jacchus3.2.1:18:1:47448759:1	631960	653320	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037108}; Vesicle-trafficking protein SEC22b {ECO:0000313|EMBL:JAB11387.1}  [Source:UniProtKB/TrEMBL;Acc:F6UXM5]
ENSCJAG00000017056	KNOWN	protein_coding	UPRT	chromosome:C_jacchus3.2.1:X:1:142054208:1	67119726	67174778	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031367}; Uracil phosphoribosyltransferase homolog {ECO:0000313|EMBL:JAB03181.1}  [Source:UniProtKB/TrEMBL;Acc:F7HLV6]
ENSCJAG00000019989	NOVEL	pseudogene	ENSCJAG00000019989	chromosome:C_jacchus3.2.1:18:1:47448759:1	686528	687395	D	<no descrition>
ENSCJAG00000012431	KNOWN	protein_coding	ARAF	chromosome:C_jacchus3.2.1:X:1:142054208:1	46559441	46570184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022880}  [Source:UniProtKB/TrEMBL;Acc:F7IPQ2]
ENSCJAG00000007077	KNOWN_BY_PROJECTION	protein_coding	SLC35B1	chromosome:C_jacchus3.2.1:5:1:159171411:1	107829224	107836234	D	solute carrier family 35, member B1 [Source:HGNC Symbol;Acc:HGNC:20798]
ENSCJAG00000006008	KNOWN_BY_PROJECTION	protein_coding	COL5A3	chromosome:C_jacchus3.2.1:22:1:49145316:1	9348109	9406284	R	collagen, type V, alpha 3 [Source:HGNC Symbol;Acc:HGNC:14864]
ENSCJAG00000004948	KNOWN_BY_PROJECTION	protein_coding	PDGFA	chromosome:C_jacchus3.2.1:2:1:204313951:1	57566117	57653688	D	platelet-derived growth factor alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:8799]
ENSCJAG00000035076	NOVEL	protein_coding	ENSCJAG00000035076	chromosome:C_jacchus3.2.1:2:1:204313951:1	58787168	58788153	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044401}  [Source:UniProtKB/TrEMBL;Acc:F7E0J4]
ENSCJAG00000020409	KNOWN	protein_coding	ZCCHC8	chromosome:C_jacchus3.2.1:9:1:124281992:1	113365534	113401626	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037946}  [Source:UniProtKB/TrEMBL;Acc:F6UQH6]
ENSCJAG00000009696	KNOWN_BY_PROJECTION	protein_coding	FLT4	chromosome:C_jacchus3.2.1:2:1:204313951:1	58870363	58895826	D	fms-related tyrosine kinase 4 [Source:HGNC Symbol;Acc:HGNC:3767]
ENSCJAG00000004695	KNOWN_BY_PROJECTION	protein_coding	PDSS1	chromosome:C_jacchus3.2.1:7:1:155834243:1	24185928	24245614	D	prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
ENSCJAG00000012475	KNOWN_BY_PROJECTION	protein_coding	MMP21	chromosome:C_jacchus3.2.1:12:1:121768101:1	113703693	113712888	R	matrix metallopeptidase 21 [Source:HGNC Symbol;Acc:HGNC:14357]
ENSCJAG00000019954	KNOWN_BY_PROJECTION	protein_coding	PDE4DIP	chromosome:C_jacchus3.2.1:18:1:47448759:1	751435	916475	D	phosphodiesterase 4D interacting protein [Source:HGNC Symbol;Acc:HGNC:15580]
ENSCJAG00000010513	KNOWN_BY_PROJECTION	protein_coding	MTFP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	193297794	193301265	D	mitochondrial fission process 1 [Source:HGNC Symbol;Acc:HGNC:26945]
ENSCJAG00000020419	KNOWN	protein_coding	RSRC2	chromosome:C_jacchus3.2.1:9:1:124281992:1	113405912	113428157	R	Arginine/serine-rich coiled-coil protein 2 {ECO:0000313|EMBL:JAB04690.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037992}  [Source:UniProtKB/TrEMBL;Acc:F7BUZ2]
ENSCJAG00000017070	KNOWN_BY_PROJECTION	protein_coding	ZDHHC15	chromosome:C_jacchus3.2.1:X:1:142054208:1	67247232	67406180	R	zinc finger, DHHC-type containing 15 [Source:HGNC Symbol;Acc:HGNC:20342]
ENSCJAG00000010523	KNOWN_BY_PROJECTION	protein_coding	SEC14L3	chromosome:C_jacchus3.2.1:1:1:210400635:1	193312060	193323606	R	SEC14-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18655]
ENSCJAG00000009787	KNOWN	protein_coding	SCGB3A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	58905251	58906684	D	Secretoglobin family 3A member 1 {ECO:0000313|EMBL:JAB33944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017947}  [Source:UniProtKB/TrEMBL;Acc:F7I9S4]
ENSCJAG00000012296	KNOWN	protein_coding	OLFML3	chromosome:C_jacchus3.2.1:7:1:155834243:1	150011802	150014627	D	Olfactomedin-like protein 3 {ECO:0000313|EMBL:JAB01847.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022562}  [Source:UniProtKB/TrEMBL;Acc:F7I8J0]
ENSCJAG00000012453	KNOWN_BY_PROJECTION	protein_coding	UROS	chromosome:C_jacchus3.2.1:12:1:121768101:1	113720872	113756711	R	uroporphyrinogen III synthase [Source:HGNC Symbol;Acc:HGNC:12592]
ENSCJAG00000017109	NOVEL	protein_coding	ENSCJAG00000017109	chromosome:C_jacchus3.2.1:X:1:142054208:1	67432838	67433996	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052292}  [Source:UniProtKB/TrEMBL;Acc:F7IGT0]
ENSCJAG00000000730	KNOWN	protein_coding	ORC3	chromosome:C_jacchus3.2.1:4:1:171630274:1	86599036	86762314	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047975}  [Source:UniProtKB/TrEMBL;Acc:F7DL68]
ENSCJAG00000018587	NOVEL	protein_coding	ENSCJAG00000018587	chromosome:C_jacchus3.2.1:X:1:142054208:1	67480740	67481444	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034492}  [Source:UniProtKB/TrEMBL;Acc:F7IK97]
ENSCJAG00000021891	NOVEL	protein_coding	ENSCJAG00000021891	chromosome:C_jacchus3.2.1:X:1:142054208:1	67594298	67595150	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040583}  [Source:UniProtKB/TrEMBL;Acc:F7INJ7]
ENSCJAG00000018571	KNOWN	protein_coding	ENSCJAG00000018571	chromosome:C_jacchus3.2.1:X:1:142054208:1	67696303	67701697	D	UPF0368 protein Cxorf26 {ECO:0000313|EMBL:JAB09971.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034488}  [Source:UniProtKB/TrEMBL;Acc:F7IKA8]
ENSCJAG00000007104	KNOWN	protein_coding	SPOP	chromosome:C_jacchus3.2.1:5:1:159171411:1	107858217	107949059	D	Speckle-type POZ protein {ECO:0000313|EMBL:JAB05606.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013277}  [Source:UniProtKB/TrEMBL;Acc:F6X846]
ENSCJAG00000012506	KNOWN_BY_PROJECTION	protein_coding	SYN1	chromosome:C_jacchus3.2.1:X:1:142054208:1	46570165	46617942	R	synapsin I [Source:HGNC Symbol;Acc:HGNC:11494]
ENSCJAG00000021172	KNOWN_BY_PROJECTION	protein_coding	FGF16	chromosome:C_jacchus3.2.1:X:1:142054208:1	68577401	68586275	D	fibroblast growth factor 16 [Source:HGNC Symbol;Acc:HGNC:3672]
ENSCJAG00000009795	KNOWN_BY_PROJECTION	protein_coding	CNOT6	chromosome:C_jacchus3.2.1:2:1:204313951:1	58924139	59007534	R	CCR4-NOT transcription complex, subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
ENSCJAG00000007160	KNOWN	protein_coding	NXPH3	chromosome:C_jacchus3.2.1:5:1:159171411:1	107968024	107973031	R	Neurexophilin {ECO:0000256|PIRNR:PIRNR038019}  [Source:UniProtKB/TrEMBL;Acc:F7CES0]
ENSCJAG00000021170	KNOWN_BY_PROJECTION	protein_coding	ATRX	chromosome:C_jacchus3.2.1:X:1:142054208:1	68629291	68855176	R	alpha thalassemia/mental retardation syndrome X-linked [Source:HGNC Symbol;Acc:HGNC:886]
ENSCJAG00000007164	KNOWN	protein_coding	NGFR	chromosome:C_jacchus3.2.1:5:1:159171411:1	108023418	108043643	R	Tumor necrosis factor receptor superfamily member 16 {ECO:0000313|EMBL:JAB03945.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013325}  [Source:UniProtKB/TrEMBL;Acc:F7C0A9]
ENSCJAG00000012411	KNOWN_BY_PROJECTION	protein_coding	BCCIP	chromosome:C_jacchus3.2.1:12:1:121768101:1	113756986	113785955	D	BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]
ENSCJAG00000019992	NOVEL	pseudogene	ENSCJAG00000019992	chromosome:C_jacchus3.2.1:18:1:47448759:1	791006	791859	D	<no descrition>
ENSCJAG00000007174	KNOWN_BY_PROJECTION	protein_coding	PHB	chromosome:C_jacchus3.2.1:5:1:159171411:1	108125324	108140155	D	prohibitin [Source:HGNC Symbol;Acc:HGNC:8912]
ENSCJAG00000005990	KNOWN_BY_PROJECTION	protein_coding	RDH8	chromosome:C_jacchus3.2.1:22:1:49145316:1	9409798	9418284	D	retinol dehydrogenase 8 (all-trans) [Source:HGNC Symbol;Acc:HGNC:14423]
ENSCJAG00000012324	NOVEL	pseudogene	ENSCJAG00000012324	chromosome:C_jacchus3.2.1:7:1:155834243:1	150043298	150044900	D	<no descrition>
ENSCJAG00000009826	NOVEL	pseudogene	ENSCJAG00000009826	chromosome:C_jacchus3.2.1:2:1:204313951:1	59024219	59024841	D	<no descrition>
ENSCJAG00000012326	NOVEL	pseudogene	ENSCJAG00000012326	chromosome:C_jacchus3.2.1:7:1:155834243:1	150048217	150049107	D	<no descrition>
ENSCJAG00000032077	NOVEL	pseudogene	ENSCJAG00000032077	chromosome:C_jacchus3.2.1:22:1:49145316:1	9422147	9422628	D	<no descrition>
ENSCJAG00000009830	NOVEL	protein_coding	ENSCJAG00000009830	chromosome:C_jacchus3.2.1:2:1:204313951:1	59049657	59050245	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018021}  [Source:UniProtKB/TrEMBL;Acc:F7GWL2]
ENSCJAG00000009834	NOVEL	protein_coding	ENSCJAG00000009834	chromosome:C_jacchus3.2.1:2:1:204313951:1	59062681	59065120	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018043}  [Source:UniProtKB/TrEMBL;Acc:F7GRB3]
ENSCJAG00000005973	NOVEL	protein_coding	ENSCJAG00000005973	chromosome:C_jacchus3.2.1:22:1:49145316:1	9433591	9473451	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010979}  [Source:UniProtKB/TrEMBL;Acc:F7IAN1]
ENSCJAG00000004711	KNOWN	protein_coding	ABI1	chromosome:C_jacchus3.2.1:7:1:155834243:1	24244967	24366030	R	Abl interactor 1 isoform d {ECO:0000313|EMBL:JAB02595.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008676}  [Source:UniProtKB/TrEMBL;Acc:F7I885]
ENSCJAG00000012333	KNOWN	protein_coding	SYT6	chromosome:C_jacchus3.2.1:7:1:155834243:1	150137805	150204524	R	Synaptotagmin-6 {ECO:0000313|EMBL:JAB14636.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022585}  [Source:UniProtKB/TrEMBL;Acc:F7I632]
ENSCJAG00000015288	NOVEL	protein_coding	ENSCJAG00000015288	chromosome:C_jacchus3.2.1:18:1:47448759:1	942744	992775	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007929}  [Source:UniProtKB/TrEMBL;Acc:F6ZRM6]
ENSCJAG00000020449	KNOWN_BY_PROJECTION	protein_coding	KNTC1	chromosome:C_jacchus3.2.1:9:1:124281992:1	113428404	113533549	D	kinetochore associated 1 [Source:HGNC Symbol;Acc:HGNC:17255]
ENSCJAG00000033094	NOVEL	pseudogene	ENSCJAG00000033094	chromosome:C_jacchus3.2.1:X:1:142054208:1	68780480	68781416	D	<no descrition>
ENSCJAG00000005935	KNOWN	protein_coding	C19ORF66	chromosome:C_jacchus3.2.1:22:1:49145316:1	9490102	9497635	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010962}  [Source:UniProtKB/TrEMBL;Acc:F7ICY1]
ENSCJAG00000002158	KNOWN_BY_PROJECTION	protein_coding	HFE2	chromosome:C_jacchus3.2.1:18:1:47448759:1	1135262	1139567	D	hemochromatosis type 2 (juvenile) [Source:HGNC Symbol;Acc:HGNC:4887]
ENSCJAG00000018916	KNOWN	protein_coding	MAGT1	chromosome:C_jacchus3.2.1:X:1:142054208:1	68970682	69040834	R	Magnesium transporter protein 1 {ECO:0000313|EMBL:JAB02440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035146}  [Source:UniProtKB/TrEMBL;Acc:F7HX46]
ENSCJAG00000005919	KNOWN_BY_PROJECTION	protein_coding	ANGPTL6	chromosome:C_jacchus3.2.1:22:1:49145316:1	9496031	9505055	R	angiopoietin-like 6 [Source:HGNC Symbol;Acc:HGNC:23140]
ENSCJAG00000007206	KNOWN	protein_coding	ZNF652	chromosome:C_jacchus3.2.1:5:1:159171411:1	108185961	108423726	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033465}; Zinc finger protein 652 {ECO:0000313|EMBL:JAB24971.1}  [Source:UniProtKB/TrEMBL;Acc:F6QQQ9]
ENSCJAG00000012555	KNOWN	protein_coding	TIMP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	46583380	46587609	D	Metalloproteinase inhibitor 1 {ECO:0000313|EMBL:JAB23092.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023036}  [Source:UniProtKB/TrEMBL;Acc:F7IG45]
ENSCJAG00000005781	KNOWN	protein_coding	P2RY11	chromosome:C_jacchus3.2.1:22:1:49145316:1	9509642	9517270	D	Callithrix jacchus purinergic receptor P2Y, G-protein coupled, 11 (P2RY11), mRNA. [Source:RefSeq mRNA;Acc:NM_001204433]
ENSCJAG00000002161	KNOWN	protein_coding	TXNIP	chromosome:C_jacchus3.2.1:18:1:47448759:1	1158081	1162234	D	Thioredoxin-interacting protein {ECO:0000313|EMBL:JAB21801.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003899}  [Source:UniProtKB/TrEMBL;Acc:F7GFR5]
ENSCJAG00000035869	KNOWN_BY_PROJECTION	protein_coding	SEC14L4	chromosome:C_jacchus3.2.1:1:1:210400635:1	193334775	193391565	R	SEC14-like 4 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:20627]
ENSCJAG00000007216	KNOWN_BY_PROJECTION	protein_coding	PHOSPHO1	chromosome:C_jacchus3.2.1:5:1:159171411:1	108320423	108327669	D	phosphatase, orphan 1 [Source:HGNC Symbol;Acc:HGNC:16815]
ENSCJAG00000009844	KNOWN	protein_coding	RUFY1	chromosome:C_jacchus3.2.1:2:1:204313951:1	59141510	59217873	D	RUN and FYVE domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB05088.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018218}  [Source:UniProtKB/TrEMBL;Acc:F7H1B8]
ENSCJAG00000012356	KNOWN	protein_coding	DHX32	chromosome:C_jacchus3.2.1:12:1:121768101:1	113769614	113826517	R	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 {ECO:0000313|EMBL:JAB03583.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022705}  [Source:UniProtKB/TrEMBL;Acc:F7IHT4]
ENSCJAG00000006392	KNOWN_BY_PROJECTION	protein_coding	SNX6	chromosome:C_jacchus3.2.1:10:1:132174527:1	58929886	58998319	R	sorting nexin 6 [Source:HGNC Symbol;Acc:HGNC:14970]
ENSCJAG00000007219	KNOWN	protein_coding	ABI3	chromosome:C_jacchus3.2.1:5:1:159171411:1	108327810	108341829	R	ABI gene family member 3 isoform 1 {ECO:0000313|EMBL:JAB13207.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013464}  [Source:UniProtKB/TrEMBL;Acc:F6VGL5]
ENSCJAG00000010617	KNOWN_BY_PROJECTION	protein_coding	PES1	chromosome:C_jacchus3.2.1:1:1:210400635:1	193398743	193442082	R	pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]
ENSCJAG00000007241	KNOWN	protein_coding	GNGT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	108342699	108346368	D	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F6UVS8]
ENSCJAG00000002179	KNOWN	protein_coding	POLR3GL	chromosome:C_jacchus3.2.1:18:1:47448759:1	1179284	1192987	R	DNA-directed RNA polymerase III subunit RPC7-like {ECO:0000313|EMBL:JAB05551.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003931}  [Source:UniProtKB/TrEMBL;Acc:F7EJW7]
ENSCJAG00000004045	KNOWN_BY_PROJECTION	protein_coding	COX7B	chromosome:C_jacchus3.2.1:X:1:142054208:1	69047125	69053255	D	cytochrome c oxidase subunit VIIb [Source:HGNC Symbol;Acc:HGNC:2291]
ENSCJAG00000012592	KNOWN	protein_coding	CFP	chromosome:C_jacchus3.2.1:X:1:142054208:1	46622530	46628236	R	Properdin {ECO:0000313|EMBL:JAB04214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023066}  [Source:UniProtKB/TrEMBL;Acc:F7IDK9]
ENSCJAG00000005889	KNOWN_BY_PROJECTION	protein_coding	EIF3G	chromosome:C_jacchus3.2.1:22:1:49145316:1	9517513	9522798	R	eukaryotic translation initiation factor 3, subunit G [Source:HGNC Symbol;Acc:HGNC:3274]
ENSCJAG00000004052	KNOWN_BY_PROJECTION	protein_coding	ATP7A	chromosome:C_jacchus3.2.1:X:1:142054208:1	69060272	69234344	D	ATPase, Cu++ transporting, alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:869]
ENSCJAG00000007247	KNOWN_BY_PROJECTION	protein_coding	B4GALNT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	108380880	108415979	R	beta-1,4-N-acetyl-galactosaminyl transferase 2 [Source:HGNC Symbol;Acc:HGNC:24136]
ENSCJAG00000020485	KNOWN_BY_PROJECTION	protein_coding	HCAR1	chromosome:C_jacchus3.2.1:9:1:124281992:1	113610516	113622206	R	hydroxycarboxylic acid receptor 1 [Source:HGNC Symbol;Acc:HGNC:4532]
ENSCJAG00000002193	KNOWN	protein_coding	ANKRD34A	chromosome:C_jacchus3.2.1:18:1:47448759:1	1193148	1198510	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003940}  [Source:UniProtKB/TrEMBL;Acc:F7EJN5]
ENSCJAG00000002198	KNOWN	protein_coding	LIX1L	chromosome:C_jacchus3.2.1:18:1:47448759:1	1199949	1220414	D	LIX1-like protein {ECO:0000313|EMBL:JAB06645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003960}  [Source:UniProtKB/TrEMBL;Acc:F7E752]
ENSCJAG00000012335	KNOWN_BY_PROJECTION	protein_coding	FANK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	113827129	113961050	D	fibronectin type III and ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:HGNC:23527]
ENSCJAG00000006406	KNOWN	protein_coding	CFL2	chromosome:C_jacchus3.2.1:10:1:132174527:1	59094507	59098897	R	Cofilin-2 isoform 1 {ECO:0000313|EMBL:JAB04261.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011824}  [Source:UniProtKB/TrEMBL;Acc:F7DMB4]
ENSCJAG00000002209	KNOWN	protein_coding	RBM8A	chromosome:C_jacchus3.2.1:18:1:47448759:1	1227361	1231953	D	RNA-binding protein 8A {ECO:0000313|EMBL:JAB11095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003980}  [Source:UniProtKB/TrEMBL;Acc:F7DRZ4]
ENSCJAG00000020487	KNOWN_BY_PROJECTION	protein_coding	PIN4	chromosome:C_jacchus3.2.1:9:1:124281992:1	113645191	113646152	R	protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Source:HGNC Symbol;Acc:HGNC:8992]
ENSCJAG00000020488	NOVEL	protein_coding	ENSCJAG00000020488	chromosome:C_jacchus3.2.1:9:1:124281992:1	113657007	113670167	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038077}  [Source:UniProtKB/TrEMBL;Acc:F7INQ3]
ENSCJAG00000004775	KNOWN_BY_PROJECTION	protein_coding	ACBD5	chromosome:C_jacchus3.2.1:7:1:155834243:1	24399073	24443055	D	acyl-CoA binding domain containing 5 [Source:HGNC Symbol;Acc:HGNC:23338]
ENSCJAG00000021082	KNOWN	protein_coding	PGK1	chromosome:C_jacchus3.2.1:X:1:142054208:1	69309282	69330055	D	Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}  [Source:UniProtKB/TrEMBL;Acc:F7FF70]
ENSCJAG00000007258	KNOWN_BY_PROJECTION	protein_coding	IGF2BP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	108498219	108552438	R	insulin-like growth factor 2 mRNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:28866]
ENSCJAG00000016343	KNOWN_BY_PROJECTION	protein_coding	CCDC62	chromosome:C_jacchus3.2.1:9:1:124281992:1	113676308	113739318	D	coiled-coil domain containing 62 [Source:HGNC Symbol;Acc:HGNC:30723]
ENSCJAG00000006421	KNOWN_BY_PROJECTION	protein_coding	BAZ1A	chromosome:C_jacchus3.2.1:10:1:132174527:1	59138657	59251997	R	bromodomain adjacent to zinc finger domain, 1A [Source:HGNC Symbol;Acc:HGNC:960]
ENSCJAG00000002216	KNOWN	protein_coding	ENSCJAG00000002216	chromosome:C_jacchus3.2.1:18:1:47448759:1	1229619	1235593	R	Callithrix jacchus gonadotropin-releasing hormone II receptor-like (LOC100399755), mRNA. [Source:RefSeq mRNA;Acc:NM_001267759]
ENSCJAG00000002223	KNOWN	protein_coding	PEX11B	chromosome:C_jacchus3.2.1:18:1:47448759:1	1236260	1245463	D	Peroxisomal membrane protein 11B isoform 1 {ECO:0000313|EMBL:JAB09724.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004005}  [Source:UniProtKB/TrEMBL;Acc:F6YRH2]
ENSCJAG00000004808	KNOWN_BY_PROJECTION	protein_coding	MASTL	chromosome:C_jacchus3.2.1:7:1:155834243:1	24447073	24494504	R	microtubule associated serine/threonine kinase-like [Source:HGNC Symbol;Acc:HGNC:19042]
ENSCJAG00000034978	KNOWN	protein_coding	ELK1	chromosome:C_jacchus3.2.1:X:1:142054208:1	46634262	46645920	R	ETS domain-containing protein Elk-1 isoform a {ECO:0000313|EMBL:JAB04343.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044993}  [Source:UniProtKB/TrEMBL;Acc:F7FV61]
ENSCJAG00000007300	KNOWN_BY_PROJECTION	protein_coding	GIP	chromosome:C_jacchus3.2.1:5:1:159171411:1	108583421	108592669	D	gastric inhibitory polypeptide [Source:HGNC Symbol;Acc:HGNC:4270]
ENSCJAG00000002231	KNOWN_BY_PROJECTION	protein_coding	ITGA10	chromosome:C_jacchus3.2.1:18:1:47448759:1	1247062	1264255	D	integrin, alpha 10 [Source:HGNC Symbol;Acc:HGNC:6135]
ENSCJAG00000012314	KNOWN_BY_PROJECTION	protein_coding	ADAM12	chromosome:C_jacchus3.2.1:12:1:121768101:1	113967980	114362897	R	ADAM metallopeptidase domain 12 [Source:HGNC Symbol;Acc:HGNC:190]
ENSCJAG00000012339	KNOWN	protein_coding	TRIM33	chromosome:C_jacchus3.2.1:7:1:155834243:1	150435167	150554130	R	E3 ubiquitin-protein ligase TRIM33 isoform beta {ECO:0000313|EMBL:JAB12310.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022771}  [Source:UniProtKB/TrEMBL;Acc:F7I621]
ENSCJAG00000007322	KNOWN_BY_PROJECTION	protein_coding	SNF8	chromosome:C_jacchus3.2.1:5:1:159171411:1	108614559	108629176	D	SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:HGNC:17028]
ENSCJAG00000007326	KNOWN_BY_PROJECTION	protein_coding	UBE2Z	chromosome:C_jacchus3.2.1:5:1:159171411:1	108630585	108651970	R	ubiquitin-conjugating enzyme E2Z [Source:HGNC Symbol;Acc:HGNC:25847]
ENSCJAG00000016367	NOVEL	protein_coding	ENSCJAG00000016367	chromosome:C_jacchus3.2.1:9:1:124281992:1	113696867	113697905	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052441}  [Source:UniProtKB/TrEMBL;Acc:F7I4U0]
ENSCJAG00000004830	KNOWN	protein_coding	YME1L1	chromosome:C_jacchus3.2.1:7:1:155834243:1	24494886	24540795	D	ATP-dependent zinc metalloprotease YME1L1 isoform 3 {ECO:0000313|EMBL:JAB06905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049628}  [Source:UniProtKB/TrEMBL;Acc:F7ADM4]
ENSCJAG00000005794	KNOWN_BY_PROJECTION	protein_coding	DNMT1	chromosome:C_jacchus3.2.1:22:1:49145316:1	9535471	9591994	R	DNA (cytosine-5-)-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:2976]
ENSCJAG00000016370	KNOWN_BY_PROJECTION	protein_coding	HIP1R	chromosome:C_jacchus3.2.1:9:1:124281992:1	113760570	113774287	D	huntingtin interacting protein 1 related [Source:HGNC Symbol;Acc:HGNC:18415]
ENSCJAG00000009931	NOVEL	protein_coding	ENSCJAG00000009931	chromosome:C_jacchus3.2.1:2:1:204313951:1	59221609	59232047	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018335}  [Source:UniProtKB/TrEMBL;Acc:F7ECV0]
ENSCJAG00000002247	KNOWN_BY_PROJECTION	protein_coding	ANKRD35	chromosome:C_jacchus3.2.1:18:1:47448759:1	1276021	1300388	D	ankyrin repeat domain 35 [Source:HGNC Symbol;Acc:HGNC:26323]
ENSCJAG00000015636	KNOWN_BY_PROJECTION	protein_coding	UXT	chromosome:C_jacchus3.2.1:X:1:142054208:1	46647105	46653594	R	ubiquitously-expressed, prefoldin-like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]
ENSCJAG00000015620	KNOWN_BY_PROJECTION	protein_coding	ZNF81	chromosome:C_jacchus3.2.1:X:1:142054208:1	46783582	46856973	D	zinc finger protein 81 [Source:HGNC Symbol;Acc:HGNC:13156]
ENSCJAG00000015608	KNOWN	protein_coding	ZNF182	chromosome:C_jacchus3.2.1:X:1:142054208:1	46912743	46943825	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028755}; Zinc finger protein 182 isoform 2 {ECO:0000313|EMBL:JAB29507.1}  [Source:UniProtKB/TrEMBL;Acc:F7A3W7]
ENSCJAG00000019520	KNOWN_BY_PROJECTION	protein_coding	TAF9B	chromosome:C_jacchus3.2.1:X:1:142054208:1	69333464	69343679	R	TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:HGNC:17306]
ENSCJAG00000034860	NOVEL	protein_coding	ENSCJAG00000034860	chromosome:C_jacchus3.2.1:1:1:210400635:1	193420280	193420922	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044751}  [Source:UniProtKB/TrEMBL;Acc:F7FWI1]
ENSCJAG00000007352	KNOWN_BY_PROJECTION	protein_coding	ATP5G1	chromosome:C_jacchus3.2.1:5:1:159171411:1	108663270	108666496	R	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:HGNC:841]
ENSCJAG00000010645	KNOWN_BY_PROJECTION	protein_coding	TCN2	chromosome:C_jacchus3.2.1:1:1:210400635:1	193442362	193465420	D	transcobalamin II [Source:HGNC Symbol;Acc:HGNC:11653]
ENSCJAG00000012285	KNOWN_BY_PROJECTION	protein_coding	C10orf90	chromosome:C_jacchus3.2.1:12:1:121768101:1	114400090	114647135	R	chromosome 10 open reading frame 90 [Source:HGNC Symbol;Acc:HGNC:26563]
ENSCJAG00000012448	NOVEL	protein_coding	ENSCJAG00000012448	chromosome:C_jacchus3.2.1:7:1:155834243:1	150624816	150637873	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022816}  [Source:UniProtKB/TrEMBL;Acc:F7HWK9]
ENSCJAG00000010663	KNOWN	protein_coding	SLC35E4	chromosome:C_jacchus3.2.1:1:1:210400635:1	193471807	193499813	D	Solute carrier family 35 member E4 {ECO:0000313|EMBL:JAB12262.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019643}  [Source:UniProtKB/TrEMBL;Acc:F6TN73]
ENSCJAG00000032152	NOVEL	protein_coding	ENSCJAG00000032152	chromosome:C_jacchus3.2.1:X:1:142054208:1	69398704	69399468	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013080}  [Source:UniProtKB/TrEMBL;Acc:F6Z1K4]
ENSCJAG00000010671	NOVEL	protein_coding	ENSCJAG00000010671	chromosome:C_jacchus3.2.1:1:1:210400635:1	193491319	193491933	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019657}  [Source:UniProtKB/TrEMBL;Acc:F6TCB4]
ENSCJAG00000023257	KNOWN_BY_PROJECTION	protein_coding	CYSLTR1	chromosome:C_jacchus3.2.1:X:1:142054208:1	69401813	69467843	R	cysteinyl leukotriene receptor 1 [Source:HGNC Symbol;Acc:HGNC:17451]
ENSCJAG00000010674	KNOWN	protein_coding	DUSP18	chromosome:C_jacchus3.2.1:1:1:210400635:1	193498557	193504484	R	Dual specificity protein phosphatase 18 {ECO:0000313|EMBL:JAB08250.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019666}  [Source:UniProtKB/TrEMBL;Acc:F6T250]
ENSCJAG00000014797	KNOWN_BY_PROJECTION	protein_coding	SLC38A5	chromosome:C_jacchus3.2.1:X:1:142054208:1	46943345	47077150	R	solute carrier family 38, member 5 [Source:HGNC Symbol;Acc:HGNC:18070]
ENSCJAG00000009572	KNOWN_BY_PROJECTION	protein_coding	ZCCHC5	chromosome:C_jacchus3.2.1:X:1:142054208:1	69741851	69743268	R	zinc finger, CCHC domain containing 5 [Source:HGNC Symbol;Acc:HGNC:22997]
ENSCJAG00000000692	KNOWN	protein_coding	RARS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	86600879	86696720	R	Putative arginine--tRNA ligase, mitochondrial {ECO:0000313|EMBL:JAB09232.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001247}  [Source:UniProtKB/TrEMBL;Acc:F6Z0R1]
ENSCJAG00000022363	KNOWN_BY_PROJECTION	protein_coding	LPAR4	chromosome:C_jacchus3.2.1:X:1:142054208:1	69789657	69799952	D	lysophosphatidic acid receptor 4 [Source:HGNC Symbol;Acc:HGNC:4478]
ENSCJAG00000016420	KNOWN_BY_PROJECTION	protein_coding	VPS37B	chromosome:C_jacchus3.2.1:9:1:124281992:1	113779500	113809501	R	vacuolar protein sorting 37 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25754]
ENSCJAG00000016425	NOVEL	pseudogene	ENSCJAG00000016425	chromosome:C_jacchus3.2.1:9:1:124281992:1	113811834	113812188	R	<no descrition>
ENSCJAG00000010679	KNOWN_BY_PROJECTION	protein_coding	OSBP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	193520209	193741802	D	oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
ENSCJAG00000012467	KNOWN_BY_PROJECTION	protein_coding	DENND2C	chromosome:C_jacchus3.2.1:7:1:155834243:1	150641900	150725091	R	DENN/MADD domain containing 2C [Source:HGNC Symbol;Acc:HGNC:24748]
ENSCJAG00000007375	NOVEL	protein_coding	ENSCJAG00000007375	chromosome:C_jacchus3.2.1:5:1:159171411:1	108697592	108728451	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013745}  [Source:UniProtKB/TrEMBL;Acc:F6X3Q4]
ENSCJAG00000016428	KNOWN	protein_coding	ABCB9	chromosome:C_jacchus3.2.1:9:1:124281992:1	113845527	113884769	R	ATP-binding cassette sub-family B member 9 isoform 1 {ECO:0000313|EMBL:JAB27549.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030284}  [Source:UniProtKB/TrEMBL;Acc:F7A9F9]
ENSCJAG00000005764	KNOWN_BY_PROJECTION	protein_coding	MRPL4	chromosome:C_jacchus3.2.1:22:1:49145316:1	9656179	9666735	D	mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
ENSCJAG00000009576	KNOWN_BY_PROJECTION	protein_coding	P2RY10	chromosome:C_jacchus3.2.1:X:1:142054208:1	70118927	70186628	D	purinergic receptor P2Y, G-protein coupled, 10 [Source:HGNC Symbol;Acc:HGNC:19906]
ENSCJAG00000009588	KNOWN_BY_PROJECTION	protein_coding	GPR174	chromosome:C_jacchus3.2.1:X:1:142054208:1	70442975	70443866	D	G protein-coupled receptor 174 [Source:HGNC Symbol;Acc:HGNC:30245]
ENSCJAG00000009591	KNOWN	protein_coding	ITM2A	chromosome:C_jacchus3.2.1:X:1:142054208:1	70567029	70573966	R	Integral membrane protein 2A isoform 1 {ECO:0000313|EMBL:JAB05338.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017587}  [Source:UniProtKB/TrEMBL;Acc:F7I9Y2]
ENSCJAG00000009985	NOVEL	protein_coding	ENSCJAG00000009985	chromosome:C_jacchus3.2.1:2:1:204313951:1	59288470	59290505	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018341}  [Source:UniProtKB/TrEMBL;Acc:F7DZC0]
ENSCJAG00000009610	NOVEL	protein_coding	ENSCJAG00000009610	chromosome:C_jacchus3.2.1:X:1:142054208:1	70652499	70655549	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017605}  [Source:UniProtKB/TrEMBL;Acc:F7I2V8]
ENSCJAG00000012309	NOVEL	pseudogene	ENSCJAG00000012309	chromosome:C_jacchus3.2.1:12:1:121768101:1	114427191	114427618	D	<no descrition>
ENSCJAG00000015593	NOVEL	protein_coding	ENSCJAG00000015593	chromosome:C_jacchus3.2.1:X:1:142054208:1	46944183	46949397	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028737}  [Source:UniProtKB/TrEMBL;Acc:F7ALE5]
ENSCJAG00000006581	KNOWN	protein_coding	SRP54	chromosome:C_jacchus3.2.1:10:1:132174527:1	59352286	59399266	D	Signal recognition particle 54 kDa protein isoform 1 {ECO:0000313|EMBL:JAB06182.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012247}  [Source:UniProtKB/TrEMBL;Acc:F7GMY3]
ENSCJAG00000002257	KNOWN	protein_coding	PIAS3	chromosome:C_jacchus3.2.1:18:1:47448759:1	1308082	1320836	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042119}  [Source:UniProtKB/TrEMBL;Acc:F6VTA2]
ENSCJAG00000004914	KNOWN_BY_PROJECTION	protein_coding	ANKRD26	chromosome:C_jacchus3.2.1:7:1:155834243:1	24557968	24715752	D	ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
ENSCJAG00000009989	KNOWN	protein_coding	CANX	chromosome:C_jacchus3.2.1:2:1:204313951:1	59322662	59346219	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018539}  [Source:UniProtKB/TrEMBL;Acc:F7ECF8]
ENSCJAG00000014082	KNOWN	protein_coding	DOCK1	chromosome:C_jacchus3.2.1:12:1:121768101:1	114945249	115432825	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026082}  [Source:UniProtKB/TrEMBL;Acc:F7IR49]
ENSCJAG00000005726	KNOWN_BY_PROJECTION	protein_coding	ICAM5	chromosome:C_jacchus3.2.1:22:1:49145316:1	9691379	9706316	D	intercellular adhesion molecule 5, telencephalin [Source:HGNC Symbol;Acc:HGNC:5348]
ENSCJAG00000007395	KNOWN_BY_PROJECTION	protein_coding	TTLL6	chromosome:C_jacchus3.2.1:5:1:159171411:1	108741169	108801966	D	tubulin tyrosine ligase-like family member 6 [Source:HGNC Symbol;Acc:HGNC:26664]
ENSCJAG00000010727	NOVEL	pseudogene	ENSCJAG00000010727	chromosome:C_jacchus3.2.1:1:1:210400635:1	193592407	193593032	D	<no descrition>
ENSCJAG00000005760	KNOWN_BY_PROJECTION	protein_coding	ICAM4	chromosome:C_jacchus3.2.1:22:1:49145316:1	9696081	9697621	D	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) [Source:HGNC Symbol;Acc:HGNC:5347]
ENSCJAG00000007393	NOVEL	pseudogene	ENSCJAG00000007393	chromosome:C_jacchus3.2.1:5:1:159171411:1	108749338	108750685	R	<no descrition>
ENSCJAG00000010729	KNOWN_BY_PROJECTION	protein_coding	MORC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	193763012	193810925	R	MORC family CW-type zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:23573]
ENSCJAG00000005716	KNOWN_BY_PROJECTION	protein_coding	ZGLP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	9715433	9720840	R	zinc finger, GATA-like protein 1 [Source:HGNC Symbol;Acc:HGNC:37245]
ENSCJAG00000037004	NOVEL	protein_coding	ENSCJAG00000037004	chromosome:C_jacchus3.2.1:22:1:49145316:1	9716087	9730290	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010474}  [Source:UniProtKB/TrEMBL;Acc:F7HNA3]
ENSCJAG00000007404	KNOWN	protein_coding	CDK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	108779899	108786455	D	Cyclin-dependent kinase 2 isoform 1 {ECO:0000313|EMBL:JAB10588.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013821}  [Source:UniProtKB/TrEMBL;Acc:F7BWH8]
ENSCJAG00000004996	NOVEL	pseudogene	ENSCJAG00000004996	chromosome:C_jacchus3.2.1:7:1:155834243:1	24621618	24624114	R	<no descrition>
ENSCJAG00000000769	KNOWN_BY_PROJECTION	protein_coding	AKIRIN2	chromosome:C_jacchus3.2.1:4:1:171630274:1	86766739	86789579	R	akirin 2 [Source:HGNC Symbol;Acc:HGNC:21407]
ENSCJAG00000005000	NOVEL	pseudogene	ENSCJAG00000005000	chromosome:C_jacchus3.2.1:7:1:155834243:1	24626568	24627004	R	<no descrition>
ENSCJAG00000014776	NOVEL	protein_coding	ENSCJAG00000014776	chromosome:C_jacchus3.2.1:X:1:142054208:1	47043931	47053167	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027249}  [Source:UniProtKB/TrEMBL;Acc:F7G5Y0]
ENSCJAG00000013002	KNOWN_BY_PROJECTION	protein_coding	PTCHD3	chromosome:C_jacchus3.2.1:7:1:155834243:1	24764236	24776634	R	patched domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24776]
ENSCJAG00000000773	KNOWN_BY_PROJECTION	protein_coding	SPACA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	87167653	87186965	D	sperm acrosome associated 1 [Source:HGNC Symbol;Acc:HGNC:14967]
ENSCJAG00000009617	NOVEL	protein_coding	ENSCJAG00000009617	chromosome:C_jacchus3.2.1:X:1:142054208:1	70991406	71000055	D	<no descrition>
ENSCJAG00000002256	KNOWN_BY_PROJECTION	protein_coding	FTSJ1	chromosome:C_jacchus3.2.1:X:1:142054208:1	47088308	47090170	D	FtsJ RNA methyltransferase homolog 1 (E. coli) [Source:HGNC Symbol;Acc:HGNC:13254]
ENSCJAG00000005671	KNOWN_BY_PROJECTION	protein_coding	RAVER1	chromosome:C_jacchus3.2.1:22:1:49145316:1	9732007	9752996	R	ribonucleoprotein, PTB-binding 1 [Source:HGNC Symbol;Acc:HGNC:30296]
ENSCJAG00000031179	NOVEL	protein_coding	ENSCJAG00000031179	chromosome:C_jacchus3.2.1:X:1:142054208:1	71021370	71022051	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046796}  [Source:UniProtKB/TrEMBL;Acc:F7I196]
ENSCJAG00000002311	KNOWN_BY_PROJECTION	protein_coding	NUDT17	chromosome:C_jacchus3.2.1:18:1:47448759:1	1320882	1323730	R	nudix (nucleoside diphosphate linked moiety X)-type motif 17 [Source:HGNC Symbol;Acc:HGNC:26618]
ENSCJAG00000000775	KNOWN	protein_coding	CNR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	87269555	87289794	R	Cannabinoid receptor 1 isoform a {ECO:0000313|EMBL:JAB16042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001316}  [Source:UniProtKB/TrEMBL;Acc:F7CF55]
ENSCJAG00000009852	KNOWN_BY_PROJECTION	protein_coding	FAM46D	chromosome:C_jacchus3.2.1:X:1:142054208:1	71234652	71335792	D	family with sequence similarity 46, member D [Source:HGNC Symbol;Acc:HGNC:28399]
ENSCJAG00000000289	NOVEL	protein_coding	ENSCJAG00000000289	chromosome:C_jacchus3.2.1:X:1:142054208:1	71478755	71494263	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044230}  [Source:UniProtKB/TrEMBL;Acc:F7E0Y2]
ENSCJAG00000005644	KNOWN_BY_PROJECTION	protein_coding	ICAM3	chromosome:C_jacchus3.2.1:22:1:49145316:1	9753263	9761393	R	intercellular adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:5346]
ENSCJAG00000002259	KNOWN_BY_PROJECTION	protein_coding	PORCN	chromosome:C_jacchus3.2.1:X:1:142054208:1	47116194	47129261	D	porcupine homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17652]
ENSCJAG00000034456	NOVEL	protein_coding	ENSCJAG00000034456	chromosome:C_jacchus3.2.1:X:1:142054208:1	71541487	71563947	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047452}  [Source:UniProtKB/TrEMBL;Acc:F7IFT0]
ENSCJAG00000011516	NOVEL	pseudogene	ENSCJAG00000011516	chromosome:C_jacchus3.2.1:X:1:142054208:1	71703902	71704932	D	<no descrition>
ENSCJAG00000011519	NOVEL	pseudogene	ENSCJAG00000011519	chromosome:C_jacchus3.2.1:X:1:142054208:1	71705354	71706137	D	<no descrition>
ENSCJAG00000003573	KNOWN_BY_PROJECTION	protein_coding	HMGN5	chromosome:C_jacchus3.2.1:X:1:142054208:1	71868529	71957424	R	high mobility group nucleosome binding domain 5 [Source:HGNC Symbol;Acc:HGNC:8013]
ENSCJAG00000013007	KNOWN_BY_PROJECTION	protein_coding	RAB18	chromosome:C_jacchus3.2.1:7:1:155834243:1	24851938	24888141	D	RAB18, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:14244]
ENSCJAG00000003568	KNOWN	protein_coding	ENSCJAG00000003568	chromosome:C_jacchus3.2.1:X:1:142054208:1	71957682	72066764	D	SH3 domain-binding glutamic acid-rich-like protein {ECO:0000256|PIRNR:PIRNR008142}  [Source:UniProtKB/TrEMBL;Acc:F7GVV1]
ENSCJAG00000002526	KNOWN_BY_PROJECTION	protein_coding	POU3F4	chromosome:C_jacchus3.2.1:X:1:142054208:1	74323331	74325016	D	POU class 3 homeobox 4 [Source:HGNC Symbol;Acc:HGNC:9217]
ENSCJAG00000002295	KNOWN	protein_coding	EBP	chromosome:C_jacchus3.2.1:X:1:142054208:1	47130218	47138922	D	3-beta-hydroxysteroid-Delta(8), Delta(7)-isomerase {ECO:0000313|EMBL:JAB05666.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004133}  [Source:UniProtKB/TrEMBL;Acc:F7CM26]
ENSCJAG00000002314	KNOWN_BY_PROJECTION	protein_coding	POLR3C	chromosome:C_jacchus3.2.1:18:1:47448759:1	1328480	1342676	R	polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Source:HGNC Symbol;Acc:HGNC:30076]
ENSCJAG00000000075	KNOWN_BY_PROJECTION	protein_coding	CYLC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	74666364	74685556	D	cylicin, basic protein of sperm head cytoskeleton 1 [Source:HGNC Symbol;Acc:HGNC:2582]
ENSCJAG00000010734	NOVEL	protein_coding	ENSCJAG00000010734	chromosome:C_jacchus3.2.1:1:1:210400635:1	193813676	193819031	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019764}  [Source:UniProtKB/TrEMBL;Acc:F6WX42]
ENSCJAG00000008317	KNOWN_BY_PROJECTION	protein_coding	RPS6KA6	chromosome:C_jacchus3.2.1:X:1:142054208:1	74754932	74889857	R	ribosomal protein S6 kinase, 90kDa, polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:10435]
ENSCJAG00000016459	KNOWN_BY_PROJECTION	protein_coding	OGFOD2	chromosome:C_jacchus3.2.1:9:1:124281992:1	113891838	113897009	D	2-oxoglutarate and iron-dependent oxygenase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25823]
ENSCJAG00000007437	KNOWN	protein_coding	HOXB13	chromosome:C_jacchus3.2.1:5:1:159171411:1	108836013	108838327	D	Homeobox protein Hox-B13 {ECO:0000313|EMBL:JAB06503.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013827}  [Source:UniProtKB/TrEMBL;Acc:F7BWB3]
ENSCJAG00000000780	KNOWN_BY_PROJECTION	protein_coding	RNGTT	chromosome:C_jacchus3.2.1:4:1:171630274:1	87699040	88051539	R	RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:HGNC:10073]
ENSCJAG00000007442	KNOWN_BY_PROJECTION	protein_coding	HOXB9	chromosome:C_jacchus3.2.1:5:1:159171411:1	108931020	108936427	D	homeobox B9 [Source:HGNC Symbol;Acc:HGNC:5120]
ENSCJAG00000007454	KNOWN_BY_PROJECTION	protein_coding	HOXB8	chromosome:C_jacchus3.2.1:5:1:159171411:1	108942629	108945936	D	homeobox B8 [Source:HGNC Symbol;Acc:HGNC:5119]
ENSCJAG00000010736	KNOWN_BY_PROJECTION	protein_coding	SMTN	chromosome:C_jacchus3.2.1:1:1:210400635:1	193906215	193930380	D	smoothelin [Source:HGNC Symbol;Acc:HGNC:11126]
ENSCJAG00000007457	KNOWN	protein_coding	HOXB7	chromosome:C_jacchus3.2.1:5:1:159171411:1	108947138	108950523	D	Homeobox protein Hox-B7 {ECO:0000313|EMBL:JAB01836.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042528}  [Source:UniProtKB/TrEMBL;Acc:F6WUF0]
ENSCJAG00000007467	KNOWN	protein_coding	HOXB6	chromosome:C_jacchus3.2.1:5:1:159171411:1	108953281	109220745	D	Homeobox protein Hox-B6 {ECO:0000313|EMBL:JAB04560.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013883}  [Source:UniProtKB/TrEMBL;Acc:F6ZVZ9]
ENSCJAG00000010765	NOVEL	protein_coding	ENSCJAG00000010765	chromosome:C_jacchus3.2.1:1:1:210400635:1	193906999	193908421	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019848}  [Source:UniProtKB/TrEMBL;Acc:F7C810]
ENSCJAG00000007472	KNOWN_BY_PROJECTION	protein_coding	HOXB5	chromosome:C_jacchus3.2.1:5:1:159171411:1	108964724	108967422	D	homeobox B5 [Source:HGNC Symbol;Acc:HGNC:5116]
ENSCJAG00000007480	KNOWN_BY_PROJECTION	protein_coding	HOXB4	chromosome:C_jacchus3.2.1:5:1:159171411:1	108981301	108983679	D	homeobox B4 [Source:HGNC Symbol;Acc:HGNC:5115]
ENSCJAG00000010769	KNOWN	protein_coding	SELM	chromosome:C_jacchus3.2.1:1:1:210400635:1	193930710	193933453	R	Callithrix jacchus selenoprotein M (SELM), mRNA. [Source:RefSeq mRNA;Acc:NM_001199931]
ENSCJAG00000002300	KNOWN	protein_coding	TBC1D25	chromosome:C_jacchus3.2.1:X:1:142054208:1	47152036	47171588	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004164}  [Source:UniProtKB/TrEMBL;Acc:F7BRI1]
ENSCJAG00000036560	NOVEL	pseudogene	ENSCJAG00000036560	chromosome:C_jacchus3.2.1:7:1:155834243:1	24886362	24886807	D	<no descrition>
ENSCJAG00000012494	KNOWN_BY_PROJECTION	protein_coding	AMPD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	150728526	150754344	R	adenosine monophosphate deaminase 1 [Source:HGNC Symbol;Acc:HGNC:468]
ENSCJAG00000013033	KNOWN	protein_coding	MKX	chromosome:C_jacchus3.2.1:7:1:155834243:1	25011604	25080353	R	Homeobox protein Mohawk {ECO:0000313|EMBL:JAB30566.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023933}  [Source:UniProtKB/TrEMBL;Acc:F7FZ99]
ENSCJAG00000002332	KNOWN_BY_PROJECTION	protein_coding	RNF115	chromosome:C_jacchus3.2.1:18:1:47448759:1	1342775	1430107	D	ring finger protein 115 [Source:HGNC Symbol;Acc:HGNC:18154]
ENSCJAG00000006781	KNOWN	protein_coding	TYK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	9774612	9795731	R	Tyrosine-protein kinase {ECO:0000256|RuleBase:RU003492}  [Source:UniProtKB/TrEMBL;Acc:F6QBA9]
ENSCJAG00000007487	KNOWN	protein_coding	HOXB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	108985630	109012215	D	Homeobox protein Hox-B3 {ECO:0000313|EMBL:JAB05695.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013921}  [Source:UniProtKB/TrEMBL;Acc:F6XPU6]
ENSCJAG00000007494	KNOWN	protein_coding	HOXB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	109016365	109018629	D	Homeobox protein Hox-B2 {ECO:0000313|EMBL:JAB02320.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013928}  [Source:UniProtKB/TrEMBL;Acc:F6XPS8]
ENSCJAG00000008295	KNOWN_BY_PROJECTION	protein_coding	HDX	chromosome:C_jacchus3.2.1:X:1:142054208:1	75063406	75278471	R	highly divergent homeobox [Source:HGNC Symbol;Acc:HGNC:26411]
ENSCJAG00000010779	KNOWN_BY_PROJECTION	protein_coding	INPP5J	chromosome:C_jacchus3.2.1:1:1:210400635:1	193946571	193958385	D	inositol polyphosphate-5-phosphatase J [Source:HGNC Symbol;Acc:HGNC:8956]
ENSCJAG00000007496	KNOWN_BY_PROJECTION	protein_coding	HOXB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	109031252	109032722	D	homeobox B1 [Source:HGNC Symbol;Acc:HGNC:5111]
ENSCJAG00000016476	KNOWN_BY_PROJECTION	protein_coding	ARL6IP4	chromosome:C_jacchus3.2.1:9:1:124281992:1	113897459	113899837	D	ADP-ribosylation factor-like 6 interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:18076]
ENSCJAG00000007499	NOVEL	protein_coding	ENSCJAG00000007499	chromosome:C_jacchus3.2.1:5:1:159171411:1	109064120	109064936	R	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F6X2H9]
ENSCJAG00000007502	NOVEL	protein_coding	ENSCJAG00000007502	chromosome:C_jacchus3.2.1:5:1:159171411:1	109079123	109079734	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013938}  [Source:UniProtKB/TrEMBL;Acc:F6X2H1]
ENSCJAG00000014231	KNOWN	protein_coding	FAM196A	chromosome:C_jacchus3.2.1:12:1:121768101:1	115109193	115150590	R	Protein FAM196A {ECO:0000313|EMBL:JAB18515.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026170}  [Source:UniProtKB/TrEMBL;Acc:F7I4V3]
ENSCJAG00000036517	KNOWN	protein_coding	NRAS	chromosome:C_jacchus3.2.1:7:1:155834243:1	150770300	150779923	R	GTPase NRas {ECO:0000313|EMBL:JAB09557.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023178}  [Source:UniProtKB/TrEMBL;Acc:F7HUS3]
ENSCJAG00000014234	KNOWN_BY_PROJECTION	protein_coding	NPS	chromosome:C_jacchus3.2.1:12:1:121768101:1	115529962	115533261	D	neuropeptide S [Source:HGNC Symbol;Acc:HGNC:33940]
ENSCJAG00000007504	KNOWN_BY_PROJECTION	protein_coding	SKAP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	109172248	109447250	D	src kinase associated phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15605]
ENSCJAG00000014237	NOVEL	protein_coding	ENSCJAG00000014237	chromosome:C_jacchus3.2.1:12:1:121768101:1	115714930	115717652	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052437}  [Source:UniProtKB/TrEMBL;Acc:F7I747]
ENSCJAG00000014240	KNOWN_BY_PROJECTION	protein_coding	FOXI2	chromosome:C_jacchus3.2.1:12:1:121768101:1	115717921	115719605	D	forkhead box I2 [Source:HGNC Symbol;Acc:HGNC:32448]
ENSCJAG00000014242	KNOWN_BY_PROJECTION	protein_coding	CLRN3	chromosome:C_jacchus3.2.1:12:1:121768101:1	115849404	115865287	R	clarin 3 [Source:HGNC Symbol;Acc:HGNC:20795]
ENSCJAG00000008291	NOVEL	protein_coding	ENSCJAG00000008291	chromosome:C_jacchus3.2.1:X:1:142054208:1	75473732	75474999	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015301}  [Source:UniProtKB/TrEMBL;Acc:F7EMN4]
ENSCJAG00000006753	KNOWN	protein_coding	CDC37	chromosome:C_jacchus3.2.1:22:1:49145316:1	9813022	9826208	R	Hsp90 co-chaperone Cdc37 {ECO:0000313|EMBL:JAB21135.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012538}  [Source:UniProtKB/TrEMBL;Acc:F7GXW9]
ENSCJAG00000008249	KNOWN	protein_coding	APOOL	chromosome:C_jacchus3.2.1:X:1:142054208:1	75519505	75594527	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015292}  [Source:UniProtKB/TrEMBL;Acc:F7FF31]
ENSCJAG00000002349	KNOWN_BY_PROJECTION	protein_coding	CD160	chromosome:C_jacchus3.2.1:18:1:47448759:1	1437512	1448915	R	CD160 molecule [Source:HGNC Symbol;Acc:HGNC:17013]
ENSCJAG00000012565	KNOWN_BY_PROJECTION	protein_coding	CSDE1	chromosome:C_jacchus3.2.1:7:1:155834243:1	150779848	150803822	R	cold shock domain containing E1, RNA-binding [Source:HGNC Symbol;Acc:HGNC:29905]
ENSCJAG00000002353	KNOWN	protein_coding	PDZK1	chromosome:C_jacchus3.2.1:18:1:47448759:1	1493157	1511754	D	Na(+)/H(+) exchange regulatory cofactor NHE-RF3 isoform 1 {ECO:0000313|EMBL:JAB50007.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004247}  [Source:UniProtKB/TrEMBL;Acc:F6Y5Z2]
ENSCJAG00000008239	KNOWN_BY_PROJECTION	protein_coding	SATL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	75599005	75602464	R	spermidine/spermine N1-acetyl transferase-like 1 [Source:HGNC Symbol;Acc:HGNC:27992]
ENSCJAG00000014247	KNOWN	protein_coding	PTPRE	chromosome:C_jacchus3.2.1:12:1:121768101:1	115932311	116065001	D	Receptor-type tyrosine-protein phosphatase {ECO:0000256|PIRNR:PIRNR002006}  [Source:UniProtKB/TrEMBL;Acc:F7HIJ9]
ENSCJAG00000010311	KNOWN_BY_PROJECTION	protein_coding	ZNF711	chromosome:C_jacchus3.2.1:X:1:142054208:1	75705579	75732716	D	zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
ENSCJAG00000006641	KNOWN_BY_PROJECTION	protein_coding	FAM177A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	59409391	59445997	D	family with sequence similarity 177, member A1 [Source:HGNC Symbol;Acc:HGNC:19829]
ENSCJAG00000006665	NOVEL	protein_coding	ENSCJAG00000006665	chromosome:C_jacchus3.2.1:10:1:132174527:1	59411275	59412063	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012290}  [Source:UniProtKB/TrEMBL;Acc:F7FAE3]
ENSCJAG00000007520	KNOWN_BY_PROJECTION	protein_coding	SNX11	chromosome:C_jacchus3.2.1:5:1:159171411:1	109460813	109474383	R	sorting nexin 11 [Source:HGNC Symbol;Acc:HGNC:14975]
ENSCJAG00000010342	KNOWN	protein_coding	POF1B	chromosome:C_jacchus3.2.1:X:1:142054208:1	75738308	75833163	R	Protein POF1B {ECO:0000313|EMBL:JAB05931.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019130}  [Source:UniProtKB/TrEMBL;Acc:F6RLX7]
ENSCJAG00000007532	KNOWN	protein_coding	CBX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	109483487	109515857	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014014}  [Source:UniProtKB/TrEMBL;Acc:F7I2L6]
ENSCJAG00000013045	KNOWN_BY_PROJECTION	protein_coding	ARMC4	chromosome:C_jacchus3.2.1:7:1:155834243:1	25136280	25303118	R	armadillo repeat containing 4 [Source:HGNC Symbol;Acc:HGNC:25583]
ENSCJAG00000006667	KNOWN	protein_coding	PPP2R3C	chromosome:C_jacchus3.2.1:10:1:132174527:1	59447305	59495900	R	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma {ECO:0000313|EMBL:JAB05057.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012470}  [Source:UniProtKB/TrEMBL;Acc:F7EHK2]
ENSCJAG00000002362	KNOWN	protein_coding	GPR89B	chromosome:C_jacchus3.2.1:18:1:47448759:1	1512091	1579393	R	Golgi pH regulator A isoform 1 {ECO:0000313|EMBL:JAB02856.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004258}  [Source:UniProtKB/TrEMBL;Acc:F6Y4Z0]
ENSCJAG00000016487	KNOWN_BY_PROJECTION	protein_coding	PITPNM2	chromosome:C_jacchus3.2.1:9:1:124281992:1	113901385	114033699	R	phosphatidylinositol transfer protein, membrane-associated 2 [Source:HGNC Symbol;Acc:HGNC:21044]
ENSCJAG00000010102	KNOWN_BY_PROJECTION	protein_coding	MAML1	chromosome:C_jacchus3.2.1:2:1:204313951:1	59347861	59397451	D	mastermind-like 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:13632]
ENSCJAG00000010116	KNOWN	protein_coding	LTC4S	chromosome:C_jacchus3.2.1:2:1:204313951:1	59420757	59423237	D	Leukotriene C4 synthase {ECO:0000313|EMBL:JAB04944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018603}  [Source:UniProtKB/TrEMBL;Acc:F7HB52]
ENSCJAG00000010124	KNOWN_BY_PROJECTION	protein_coding	MGAT4B	chromosome:C_jacchus3.2.1:2:1:204313951:1	59424745	59429821	R	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B [Source:HGNC Symbol;Acc:HGNC:7048]
ENSCJAG00000010853	KNOWN_BY_PROJECTION	protein_coding	PLA2G3	chromosome:C_jacchus3.2.1:1:1:210400635:1	193958498	193964241	R	phospholipase A2, group III [Source:HGNC Symbol;Acc:HGNC:17934]
ENSCJAG00000002318	NOVEL	pseudogene	ENSCJAG00000002318	chromosome:C_jacchus3.2.1:X:1:142054208:1	47182903	47183225	R	<no descrition>
ENSCJAG00000002320	NOVEL	protein_coding	ENSCJAG00000002320	chromosome:C_jacchus3.2.1:X:1:142054208:1	47183584	47186730	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004185}  [Source:UniProtKB/TrEMBL;Acc:F7AQC8]
ENSCJAG00000010392	KNOWN_BY_PROJECTION	protein_coding	CHM	chromosome:C_jacchus3.2.1:X:1:142054208:1	76251081	76437107	R	choroideremia (Rab escort protein 1) [Source:HGNC Symbol;Acc:HGNC:1940]
ENSCJAG00000006698	KNOWN_BY_PROJECTION	protein_coding	PDE4A	chromosome:C_jacchus3.2.1:22:1:49145316:1	9843852	9893275	D	phosphodiesterase 4A, cAMP-specific [Source:HGNC Symbol;Acc:HGNC:8780]
ENSCJAG00000036521	NOVEL	pseudogene	ENSCJAG00000036521	chromosome:C_jacchus3.2.1:X:1:142054208:1	47183584	47184464	D	<no descrition>
ENSCJAG00000010869	KNOWN	protein_coding	RNF185	chromosome:C_jacchus3.2.1:1:1:210400635:1	193981168	194023311	D	E3 ubiquitin-protein ligase RNF185 isoform 1 {ECO:0000313|EMBL:JAB04642.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020074}  [Source:UniProtKB/TrEMBL;Acc:F7HCL9]
ENSCJAG00000002328	KNOWN	protein_coding	WDR13	chromosome:C_jacchus3.2.1:X:1:142054208:1	47210660	47223652	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004245}; WD repeat-containing protein 13 isoform 1 {ECO:0000313|EMBL:JAB05804.1}  [Source:UniProtKB/TrEMBL;Acc:F6Y611]
ENSCJAG00000012663	KNOWN	protein_coding	SIKE1	chromosome:C_jacchus3.2.1:7:1:155834243:1	150836851	150843738	R	Suppressor of IKBKE 1 isoform 2 {ECO:0000313|EMBL:JAB07604.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023200}  [Source:UniProtKB/TrEMBL;Acc:F7ISN4]
ENSCJAG00000002361	NOVEL	protein_coding	ENSCJAG00000002361	chromosome:C_jacchus3.2.1:X:1:142054208:1	47251356	47252178	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004252}  [Source:UniProtKB/TrEMBL;Acc:F6Y538]
ENSCJAG00000002363	NOVEL	pseudogene	ENSCJAG00000002363	chromosome:C_jacchus3.2.1:X:1:142054208:1	47266935	47268993	D	<no descrition>
ENSCJAG00000000808	NOVEL	protein_coding	ENSCJAG00000000808	chromosome:C_jacchus3.2.1:4:1:171630274:1	88151472	88152644	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001379}  [Source:UniProtKB/TrEMBL;Acc:F7BIH0]
ENSCJAG00000012674	NOVEL	protein_coding	ENSCJAG00000012674	chromosome:C_jacchus3.2.1:7:1:155834243:1	150893857	150894903	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023209}  [Source:UniProtKB/TrEMBL;Acc:F7ISM6]
ENSCJAG00000000811	KNOWN	protein_coding	PNRC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	88170808	88175348	D	Proline-rich nuclear receptor coactivator 1 {ECO:0000313|EMBL:JAB11737.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001397}  [Source:UniProtKB/TrEMBL;Acc:F7AHG5]
ENSCJAG00000007542	KNOWN	protein_coding	NFE2L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	109525868	109540032	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014046}  [Source:UniProtKB/TrEMBL;Acc:F7I074]
ENSCJAG00000000822	KNOWN	protein_coding	SRSF12	chromosome:C_jacchus3.2.1:4:1:171630274:1	88189364	88211955	R	Serine/arginine-rich splicing factor 12 {ECO:0000313|EMBL:JAB22099.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001402}  [Source:UniProtKB/TrEMBL;Acc:F6XUK9]
ENSCJAG00000002365	KNOWN_BY_PROJECTION	protein_coding	WAS	chromosome:C_jacchus3.2.1:X:1:142054208:1	47304180	47313473	D	Wiskott-Aldrich syndrome [Source:HGNC Symbol;Acc:HGNC:12731]
ENSCJAG00000010152	KNOWN	protein_coding	SQSTM1	chromosome:C_jacchus3.2.1:2:1:204313951:1	59451500	59466417	D	Sequestosome-1 isoform 1 {ECO:0000313|EMBL:JAB16781.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045935}  [Source:UniProtKB/TrEMBL;Acc:F6T1W1]
ENSCJAG00000007567	KNOWN_BY_PROJECTION	protein_coding	COPZ2	chromosome:C_jacchus3.2.1:5:1:159171411:1	109553573	109565789	D	coatomer protein complex, subunit zeta 2 [Source:HGNC Symbol;Acc:HGNC:19356]
ENSCJAG00000010470	NOVEL	protein_coding	ENSCJAG00000010470	chromosome:C_jacchus3.2.1:X:1:142054208:1	76703451	76704177	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019313}  [Source:UniProtKB/TrEMBL;Acc:F6RWG9]
ENSCJAG00000006677	KNOWN	protein_coding	KEAP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	9910231	9922659	R	Kelch-like ECH-associated protein 1 {ECO:0000313|EMBL:JAB04763.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012346}  [Source:UniProtKB/TrEMBL;Acc:F7HDW0]
ENSCJAG00000000825	KNOWN	protein_coding	PM20D2	chromosome:C_jacchus3.2.1:4:1:171630274:1	88232010	88254723	D	Peptidase M20 domain-containing protein 2 {ECO:0000313|EMBL:JAB04953.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001408}  [Source:UniProtKB/TrEMBL;Acc:F6XUF6]
ENSCJAG00000010422	KNOWN_BY_PROJECTION	protein_coding	DACH2	chromosome:C_jacchus3.2.1:X:1:142054208:1	76907242	77204629	D	dachshund family transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:16814]
ENSCJAG00000013079	KNOWN	protein_coding	MPP7	chromosome:C_jacchus3.2.1:7:1:155834243:1	25362784	25629059	R	MAGUK p55 subfamily member 7 {ECO:0000313|EMBL:JAB03171.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024062}  [Source:UniProtKB/TrEMBL;Acc:F7GFH1]
ENSCJAG00000000828	KNOWN_BY_PROJECTION	protein_coding	GABRR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	88271200	88325078	R	gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:HGNC Symbol;Acc:HGNC:4090]
ENSCJAG00000014323	KNOWN_BY_PROJECTION	protein_coding	MKI67	chromosome:C_jacchus3.2.1:12:1:121768101:1	116070372	116100911	R	marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]
ENSCJAG00000012678	KNOWN_BY_PROJECTION	protein_coding	SYCP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	150929321	151046112	D	synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]
ENSCJAG00000007585	KNOWN	protein_coding	OSBPL7	chromosome:C_jacchus3.2.1:5:1:159171411:1	109606151	109806948	D	Oxysterol-binding protein {ECO:0000256|RuleBase:RU003845}  [Source:UniProtKB/TrEMBL;Acc:F7I772]
ENSCJAG00000006673	KNOWN	protein_coding	S1PR5	chromosome:C_jacchus3.2.1:22:1:49145316:1	9931835	9938038	R	Sphingosine 1-phosphate receptor 5 {ECO:0000313|EMBL:JAB02797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048933}  [Source:UniProtKB/TrEMBL;Acc:F6QIC6]
ENSCJAG00000016546	KNOWN_BY_PROJECTION	protein_coding	MPHOSPH9	chromosome:C_jacchus3.2.1:9:1:124281992:1	114077662	114148367	R	M-phase phosphoprotein 9 [Source:HGNC Symbol;Acc:HGNC:7215]
ENSCJAG00000006637	KNOWN	protein_coding	ATG4D	chromosome:C_jacchus3.2.1:22:1:49145316:1	9962889	9972084	D	Cysteine protease ATG4D {ECO:0000313|EMBL:JAB28920.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012310}  [Source:UniProtKB/TrEMBL;Acc:F7D851]
ENSCJAG00000002376	KNOWN_BY_PROJECTION	protein_coding	SUV39H1	chromosome:C_jacchus3.2.1:X:1:142054208:1	47321721	47332971	D	suppressor of variegation 3-9 homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11479]
ENSCJAG00000014351	KNOWN	protein_coding	MGMT	chromosome:C_jacchus3.2.1:12:1:121768101:1	117568436	117786243	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026398}  [Source:UniProtKB/TrEMBL;Acc:F7I4N8]
ENSCJAG00000022464	KNOWN_BY_PROJECTION	protein_coding	GJA5	chromosome:C_jacchus3.2.1:18:1:47448759:1	1718004	1735279	D	gap junction protein, alpha 5, 40kDa [Source:HGNC Symbol;Acc:HGNC:4279]
ENSCJAG00000014357	KNOWN_BY_PROJECTION	protein_coding	EBF3	chromosome:C_jacchus3.2.1:12:1:121768101:1	117856384	117987644	R	early B-cell factor 3 [Source:HGNC Symbol;Acc:HGNC:19087]
ENSCJAG00000002370	KNOWN_BY_PROJECTION	protein_coding	ACP6	chromosome:C_jacchus3.2.1:18:1:47448759:1	1825839	1850688	D	acid phosphatase 6, lysophosphatidic [Source:HGNC Symbol;Acc:HGNC:29609]
ENSCJAG00000010908	KNOWN_BY_PROJECTION	protein_coding	LIMK2	chromosome:C_jacchus3.2.1:1:1:210400635:1	194029662	194101436	D	LIM domain kinase 2 [Source:HGNC Symbol;Acc:HGNC:6614]
ENSCJAG00000010479	KNOWN	protein_coding	KLHL4	chromosome:C_jacchus3.2.1:X:1:142054208:1	77818992	77973111	D	Kelch-like protein 4 isoform 1 {ECO:0000313|EMBL:JAB43801.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019438}  [Source:UniProtKB/TrEMBL;Acc:F6TQ39]
ENSCJAG00000002393	KNOWN_BY_PROJECTION	protein_coding	GLOD5	chromosome:C_jacchus3.2.1:X:1:142054208:1	47396131	47412004	D	glyoxalase domain containing 5 [Source:HGNC Symbol;Acc:HGNC:33358]
ENSCJAG00000002384	KNOWN_BY_PROJECTION	protein_coding	BCL9	chromosome:C_jacchus3.2.1:18:1:47448759:1	1875882	1970134	R	B-cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
ENSCJAG00000006750	NOVEL	protein_coding	ENSCJAG00000006750	chromosome:C_jacchus3.2.1:10:1:132174527:1	59496017	59668375	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012480}  [Source:UniProtKB/TrEMBL;Acc:F7E510]
ENSCJAG00000007669	KNOWN	protein_coding	CDK5RAP3	chromosome:C_jacchus3.2.1:5:1:159171411:1	109615213	109627837	R	CDK5 regulatory subunit-associated protein 3 {ECO:0000313|EMBL:JAB03887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014238}  [Source:UniProtKB/TrEMBL;Acc:F7HVB0]
ENSCJAG00000000835	KNOWN_BY_PROJECTION	protein_coding	GABRR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	88357134	88418470	R	gamma-aminobutyric acid (GABA) A receptor, rho 2 [Source:HGNC Symbol;Acc:HGNC:4091]
ENSCJAG00000002402	NOVEL	pseudogene	ENSCJAG00000002402	chromosome:C_jacchus3.2.1:18:1:47448759:1	2065138	2065474	D	<no descrition>
ENSCJAG00000006629	KNOWN_BY_PROJECTION	protein_coding	KRI1	chromosome:C_jacchus3.2.1:22:1:49145316:1	9972486	9984105	R	KRI1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25769]
ENSCJAG00000016599	KNOWN	protein_coding	SBNO1	chromosome:C_jacchus3.2.1:9:1:124281992:1	114084277	114303790	R	Protein strawberry notch homolog 1 isoform 1 {ECO:0000313|EMBL:JAB20229.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030712}  [Source:UniProtKB/TrEMBL;Acc:F6Y413]
ENSCJAG00000010163	KNOWN_BY_PROJECTION	protein_coding	C5orf45	chromosome:C_jacchus3.2.1:2:1:204313951:1	59466447	59485057	R	chromosome 5 open reading frame 45 [Source:HGNC Symbol;Acc:HGNC:30817]
ENSCJAG00000006759	NOVEL	pseudogene	ENSCJAG00000006759	chromosome:C_jacchus3.2.1:10:1:132174527:1	59625763	59626189	R	<no descrition>
ENSCJAG00000010169	NOVEL	protein_coding	ENSCJAG00000010169	chromosome:C_jacchus3.2.1:2:1:204313951:1	59478324	59479285	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018712}  [Source:UniProtKB/TrEMBL;Acc:F7F306]
ENSCJAG00000006766	NOVEL	protein_coding	ENSCJAG00000006766	chromosome:C_jacchus3.2.1:10:1:132174527:1	59711569	59721839	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044721}  [Source:UniProtKB/TrEMBL;Acc:F7GQM6]
ENSCJAG00000010170	KNOWN_BY_PROJECTION	protein_coding	TBC1D9B	chromosome:C_jacchus3.2.1:2:1:204313951:1	59488338	59532714	R	TBC1 domain family, member 9B (with GRAM domain) [Source:HGNC Symbol;Acc:HGNC:29097]
ENSCJAG00000012737	KNOWN_BY_PROJECTION	protein_coding	TSHB	chromosome:C_jacchus3.2.1:7:1:155834243:1	151106793	151111672	D	thyroid stimulating hormone, beta [Source:HGNC Symbol;Acc:HGNC:12372]
ENSCJAG00000012739	KNOWN	protein_coding	TSPAN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	151128279	151171520	R	Tetraspanin-2 {ECO:0000313|EMBL:JAB07284.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023346}  [Source:UniProtKB/TrEMBL;Acc:F7I6F2]
ENSCJAG00000006627	KNOWN	protein_coding	CDKN2D	chromosome:C_jacchus3.2.1:22:1:49145316:1	9985043	9987605	R	Cyclin-dependent kinase 4 inhibitor D {ECO:0000313|EMBL:JAB02930.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012225}  [Source:UniProtKB/TrEMBL;Acc:F7GT81]
ENSCJAG00000002406	KNOWN_BY_PROJECTION	protein_coding	CHD1L	chromosome:C_jacchus3.2.1:18:1:47448759:1	2185975	2241374	R	chromodomain helicase DNA binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:1916]
ENSCJAG00000006616	KNOWN_BY_PROJECTION	protein_coding	AP1M2	chromosome:C_jacchus3.2.1:22:1:49145316:1	9997230	10011703	R	adaptor-related protein complex 1, mu 2 subunit [Source:HGNC Symbol;Acc:HGNC:558]
ENSCJAG00000010543	NOVEL	pseudogene	ENSCJAG00000010543	chromosome:C_jacchus3.2.1:X:1:142054208:1	78814524	78815818	D	<no descrition>
ENSCJAG00000010550	KNOWN_BY_PROJECTION	protein_coding	CPXCR1	chromosome:C_jacchus3.2.1:X:1:142054208:1	78931590	78937051	D	CPX chromosome region, candidate 1 [Source:HGNC Symbol;Acc:HGNC:2332]
ENSCJAG00000002395	KNOWN_BY_PROJECTION	protein_coding	HDAC6	chromosome:C_jacchus3.2.1:X:1:142054208:1	47447336	47472570	D	histone deacetylase 6 [Source:HGNC Symbol;Acc:HGNC:14064]
ENSCJAG00000012750	KNOWN	protein_coding	NGF	chromosome:C_jacchus3.2.1:7:1:155834243:1	151370036	151425787	R	Beta-nerve growth factor {ECO:0000313|EMBL:JAB01796.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023356}  [Source:UniProtKB/TrEMBL;Acc:F7I425]
ENSCJAG00000035886	KNOWN	protein_coding	SLC44A2	chromosome:C_jacchus3.2.1:22:1:49145316:1	10027461	10064947	D	Choline transporter-like protein 2 isoform 2 {ECO:0000313|EMBL:JAB27933.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012182}  [Source:UniProtKB/TrEMBL;Acc:F7HJF0]
ENSCJAG00000032592	NOVEL	protein_coding	ENSCJAG00000032592	chromosome:C_jacchus3.2.1:X:1:142054208:1	79099799	79100566	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045090}  [Source:UniProtKB/TrEMBL;Acc:F6T837]
ENSCJAG00000037629	NOVEL	pseudogene	ENSCJAG00000037629	chromosome:C_jacchus3.2.1:22:1:49145316:1	10064026	10064946	D	<no descrition>
ENSCJAG00000033071	NOVEL	protein_coding	ENSCJAG00000033071	chromosome:C_jacchus3.2.1:7:1:155834243:1	151703102	151735108	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030381}  [Source:UniProtKB/TrEMBL;Acc:F6V6Z2]
ENSCJAG00000003655	NOVEL	pseudogene	ENSCJAG00000003655	chromosome:C_jacchus3.2.1:X:1:142054208:1	80026612	80027161	D	<no descrition>
ENSCJAG00000036599	NOVEL	protein_coding	ENSCJAG00000036599	chromosome:C_jacchus3.2.1:7:1:155834243:1	151711490	151739893	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052455}  [Source:UniProtKB/TrEMBL;Acc:F7I2H5]
ENSCJAG00000013110	KNOWN	protein_coding	WAC	chromosome:C_jacchus3.2.1:7:1:155834243:1	25819726	25911630	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024182}; WW domain-containing adapter protein with coiled-coil isoform 1 {ECO:0000313|EMBL:JAB06833.1}  [Source:UniProtKB/TrEMBL;Acc:F7HDY7]
ENSCJAG00000035323	NOVEL	protein_coding	ENSCJAG00000035323	chromosome:C_jacchus3.2.1:X:1:142054208:1	80190512	80193661	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027409}  [Source:UniProtKB/TrEMBL;Acc:F7GZL7]
ENSCJAG00000010215	KNOWN	protein_coding	RNF130	chromosome:C_jacchus3.2.1:2:1:204313951:1	59586587	59714278	R	E3 ubiquitin-protein ligase RNF130 {ECO:0000313|EMBL:JAB23945.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018901}  [Source:UniProtKB/TrEMBL;Acc:F7H5I9]
ENSCJAG00000003660	NOVEL	protein_coding	ENSCJAG00000003660	chromosome:C_jacchus3.2.1:X:1:142054208:1	80504345	80505221	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006623}  [Source:UniProtKB/TrEMBL;Acc:F7HB74]
ENSCJAG00000003661	NOVEL	protein_coding	ENSCJAG00000003661	chromosome:C_jacchus3.2.1:X:1:142054208:1	80730487	80731287	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006625}  [Source:UniProtKB/TrEMBL;Acc:F7HB66]
ENSCJAG00000003665	KNOWN	protein_coding	PABPC5	chromosome:C_jacchus3.2.1:X:1:142054208:1	81058749	81062730	D	Poly(A)-binding protein cytoplasmic 5 {ECO:0000313|EMBL:CAC42812.1}; Polyadenylate-binding protein 5 {ECO:0000313|EMBL:JAB21779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006640}  [Source:UniProtKB/TrEMBL;Acc:Q95M35]
ENSCJAG00000006319	KNOWN	protein_coding	DNM2	chromosome:C_jacchus3.2.1:22:1:49145316:1	10064714	10253601	D	Dynamin-2 isoform 4 {ECO:0000313|EMBL:JAB22726.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011741}  [Source:UniProtKB/TrEMBL;Acc:F7GCH1]
ENSCJAG00000014394	NOVEL	protein_coding	ENSCJAG00000014394	chromosome:C_jacchus3.2.1:12:1:121768101:1	118167404	118167936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026467}  [Source:UniProtKB/TrEMBL;Acc:F7IT80]
ENSCJAG00000003671	NOVEL	pseudogene	ENSCJAG00000003671	chromosome:C_jacchus3.2.1:X:1:142054208:1	81261596	81262275	D	<no descrition>
ENSCJAG00000014400	NOVEL	protein_coding	ENSCJAG00000014400	chromosome:C_jacchus3.2.1:12:1:121768101:1	118173754	118215101	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026504}  [Source:UniProtKB/TrEMBL;Acc:F7IL22]
ENSCJAG00000003672	KNOWN	protein_coding	ENSCJAG00000003672	chromosome:C_jacchus3.2.1:X:1:142054208:1	81369049	81478667	D	Protocadherin-11 X-linked isoform b {ECO:0000313|EMBL:JAB18609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006691}  [Source:UniProtKB/TrEMBL;Acc:F7GIW8]
ENSCJAG00000035484	NOVEL	protein_coding	ENSCJAG00000035484	chromosome:C_jacchus3.2.1:X:1:142054208:1	82363238	82363766	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045592}  [Source:UniProtKB/TrEMBL;Acc:F6S7X3]
ENSCJAG00000014418	KNOWN_BY_PROJECTION	protein_coding	TCERG1L	chromosome:C_jacchus3.2.1:12:1:121768101:1	119193979	119429657	R	transcription elongation regulator 1-like [Source:HGNC Symbol;Acc:HGNC:23533]
ENSCJAG00000008264	KNOWN_BY_PROJECTION	protein_coding	NAP1L3	chromosome:C_jacchus3.2.1:X:1:142054208:1	83143674	83146344	R	nucleosome assembly protein 1-like 3 [Source:HGNC Symbol;Acc:HGNC:7639]
ENSCJAG00000020754	NOVEL	protein_coding	ENSCJAG00000020754	chromosome:C_jacchus3.2.1:12:1:121768101:1	119868368	119869647	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042912}  [Source:UniProtKB/TrEMBL;Acc:F6WS93]
ENSCJAG00000008256	NOVEL	pseudogene	ENSCJAG00000008256	chromosome:C_jacchus3.2.1:X:1:142054208:1	83183454	83184116	D	<no descrition>
ENSCJAG00000010973	KNOWN_BY_PROJECTION	protein_coding	PIK3IP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	194104223	194116724	R	phosphoinositide-3-kinase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:24942]
ENSCJAG00000000219	KNOWN	protein_coding	PPP2R2D	chromosome:C_jacchus3.2.1:12:1:121768101:1	120016501	120037593	D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256|RuleBase:RU331113}  [Source:UniProtKB/TrEMBL;Acc:F6ZJ62]
ENSCJAG00000012756	KNOWN	protein_coding	VANGL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	151718854	151768685	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042101}; Vang-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB04970.1}  [Source:UniProtKB/TrEMBL;Acc:F6VU18]
ENSCJAG00000007692	KNOWN_BY_PROJECTION	protein_coding	PRR15L	chromosome:C_jacchus3.2.1:5:1:159171411:1	109640917	109647947	D	proline rich 15-like [Source:HGNC Symbol;Acc:HGNC:28149]
ENSCJAG00000008253	KNOWN	protein_coding	SPG21	chromosome:C_jacchus3.2.1:X:1:142054208:1	84099227	84100864	R	Maspardin isoform a {ECO:0000313|EMBL:JAB03632.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009682}  [Source:UniProtKB/TrEMBL;Acc:F7ETZ5]
ENSCJAG00000000228	KNOWN	protein_coding	BNIP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	120048573	120063917	R	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 {ECO:0000313|EMBL:JAB02158.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050570}  [Source:UniProtKB/TrEMBL;Acc:F7E5N4]
ENSCJAG00000001728	NOVEL	pseudogene	ENSCJAG00000001728	chromosome:C_jacchus3.2.1:X:1:142054208:1	84812691	84813699	R	<no descrition>
ENSCJAG00000010978	KNOWN_BY_PROJECTION	protein_coding	PATZ1	chromosome:C_jacchus3.2.1:1:1:210400635:1	194155462	194176496	R	POZ (BTB) and AT hook containing zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:13071]
ENSCJAG00000007693	KNOWN	protein_coding	PNPO	chromosome:C_jacchus3.2.1:5:1:159171411:1	109652544	109658677	R	Pyridoxine-5'-phosphate oxidase {ECO:0000313|EMBL:JAB01655.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014277}  [Source:UniProtKB/TrEMBL;Acc:F7ITB5]
ENSCJAG00000000850	KNOWN	protein_coding	UBE2J1	chromosome:C_jacchus3.2.1:4:1:171630274:1	88427486	88452047	R	Ubiquitin-conjugating enzyme E2 J1 {ECO:0000313|EMBL:JAB02064.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047859}  [Source:UniProtKB/TrEMBL;Acc:F7GS37]
ENSCJAG00000000231	KNOWN_BY_PROJECTION	protein_coding	JAKMIP3	chromosome:C_jacchus3.2.1:12:1:121768101:1	120182329	120237987	D	Janus kinase and microtubule interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23523]
ENSCJAG00000011009	KNOWN	protein_coding	DRG1	chromosome:C_jacchus3.2.1:1:1:210400635:1	194211782	194242228	D	Developmentally regulated GTP binding protein 1 (Predicted) {ECO:0000313|EMBL:ABZ10457.1}; Developmentally-regulated GTP-binding protein 1 {ECO:0000313|EMBL:JAB02067.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020342}  [Source:UniProtKB/TrEMBL;Acc:B0KWR4]
ENSCJAG00000007713	KNOWN	protein_coding	SP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	109674934	109709331	R	Transcription factor Sp2 {ECO:0000313|EMBL:JAB02974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014318}  [Source:UniProtKB/TrEMBL;Acc:F7IIW1]
ENSCJAG00000000861	KNOWN_BY_PROJECTION	protein_coding	RRAGD	chromosome:C_jacchus3.2.1:4:1:171630274:1	88462113	88505975	R	Ras-related GTP binding D [Source:HGNC Symbol;Acc:HGNC:19903]
ENSCJAG00000007740	KNOWN	protein_coding	SP6	chromosome:C_jacchus3.2.1:5:1:159171411:1	109756898	109768113	D	Transcription factor Sp6 {ECO:0000313|EMBL:JAB01876.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045929}  [Source:UniProtKB/TrEMBL;Acc:F6TC08]
ENSCJAG00000017679	NOVEL	protein_coding	ENSCJAG00000017679	chromosome:C_jacchus3.2.1:12:1:121768101:1	120263521	120281761	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032670}  [Source:UniProtKB/TrEMBL;Acc:F7CZQ8]
ENSCJAG00000013174	KNOWN	protein_coding	BAMBI	chromosome:C_jacchus3.2.1:7:1:155834243:1	25944673	25950190	D	BMP and activin membrane-bound inhibitor homolog {ECO:0000256|PIRNR:PIRNR037456}  [Source:UniProtKB/TrEMBL;Acc:F7GN88]
ENSCJAG00000007753	KNOWN_BY_PROJECTION	protein_coding	SCRN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	109771638	109775791	D	secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
ENSCJAG00000000872	NOVEL	pseudogene	ENSCJAG00000000872	chromosome:C_jacchus3.2.1:4:1:171630274:1	88546136	88547442	D	<no descrition>
ENSCJAG00000037212	NOVEL	protein_coding	ENSCJAG00000037212	chromosome:C_jacchus3.2.1:7:1:155834243:1	26113741	26116770	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052433}  [Source:UniProtKB/TrEMBL;Acc:F7I754]
ENSCJAG00000013187	NOVEL	pseudogene	ENSCJAG00000013187	chromosome:C_jacchus3.2.1:7:1:155834243:1	26142358	26142672	D	<no descrition>
ENSCJAG00000016579	KNOWN_BY_PROJECTION	protein_coding	C12orf65	chromosome:C_jacchus3.2.1:9:1:124281992:1	114182394	114186525	D	chromosome 12 open reading frame 65 [Source:HGNC Symbol;Acc:HGNC:26784]
ENSCJAG00000016585	KNOWN_BY_PROJECTION	protein_coding	CDK2AP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	114189808	114198635	R	cyclin-dependent kinase 2 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:14002]
ENSCJAG00000013190	NOVEL	protein_coding	ENSCJAG00000013190	chromosome:C_jacchus3.2.1:7:1:155834243:1	26536781	26558992	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024228}  [Source:UniProtKB/TrEMBL;Acc:F7GF02]
ENSCJAG00000034058	NOVEL	protein_coding	ENSCJAG00000034058	chromosome:C_jacchus3.2.1:10:1:132174527:1	59743582	59750062	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046394}  [Source:UniProtKB/TrEMBL;Acc:F7HZ63]
ENSCJAG00000016696	KNOWN_BY_PROJECTION	protein_coding	SETD8	chromosome:C_jacchus3.2.1:9:1:124281992:1	114332473	114352276	D	SET domain containing (lysine methyltransferase) 8 [Source:HGNC Symbol;Acc:HGNC:29489]
ENSCJAG00000013479	KNOWN_BY_PROJECTION	protein_coding	DIAPH2	chromosome:C_jacchus3.2.1:X:1:142054208:1	85883659	86840110	D	diaphanous-related formin 2 [Source:HGNC Symbol;Acc:HGNC:2877]
ENSCJAG00000007776	KNOWN_BY_PROJECTION	protein_coding	LRRC46	chromosome:C_jacchus3.2.1:5:1:159171411:1	109775985	109781702	R	leucine rich repeat containing 46 [Source:HGNC Symbol;Acc:HGNC:25047]
ENSCJAG00000007131	KNOWN_BY_PROJECTION	protein_coding	SNRNP35	chromosome:C_jacchus3.2.1:9:1:124281992:1	114374997	114384563	D	small nuclear ribonucleoprotein 35kDa (U11/U12) [Source:HGNC Symbol;Acc:HGNC:30852]
ENSCJAG00000007134	KNOWN_BY_PROJECTION	protein_coding	RILPL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	114391217	114440498	R	Rab interacting lysosomal protein-like 1 [Source:HGNC Symbol;Acc:HGNC:26814]
ENSCJAG00000007787	KNOWN_BY_PROJECTION	protein_coding	MRPL10	chromosome:C_jacchus3.2.1:5:1:159171411:1	109781878	109790164	D	mitochondrial ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:14055]
ENSCJAG00000017725	KNOWN_BY_PROJECTION	protein_coding	STK32C	chromosome:C_jacchus3.2.1:12:1:121768101:1	120283718	120425155	R	serine/threonine kinase 32C [Source:HGNC Symbol;Acc:HGNC:21332]
ENSCJAG00000007796	KNOWN_BY_PROJECTION	protein_coding	TBX21	chromosome:C_jacchus3.2.1:5:1:159171411:1	109870901	109883944	R	T-box 21 [Source:HGNC Symbol;Acc:HGNC:11599]
ENSCJAG00000002426	KNOWN	protein_coding	TIMM17B	chromosome:C_jacchus3.2.1:X:1:142054208:1	47524542	47530403	R	Mitochondrial import inner membrane translocase subunit Tim17-B isoform 2 {ECO:0000313|EMBL:JAB02496.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004459}  [Source:UniProtKB/TrEMBL;Acc:F6Y398]
ENSCJAG00000007815	KNOWN_BY_PROJECTION	protein_coding	TBKBP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	109905481	109923437	R	TBK1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:30140]
ENSCJAG00000020466	KNOWN_BY_PROJECTION	protein_coding	TMED2	chromosome:C_jacchus3.2.1:9:1:124281992:1	114489052	114504192	D	transmembrane emp24 domain trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]
ENSCJAG00000012776	KNOWN	protein_coding	CASQ2	chromosome:C_jacchus3.2.1:7:1:155834243:1	151778208	151851808	R	Calsequestrin {ECO:0000256|RuleBase:RU000648}  [Source:UniProtKB/TrEMBL;Acc:F7IQ63]
ENSCJAG00000014889	KNOWN_BY_PROJECTION	protein_coding	LRRC27	chromosome:C_jacchus3.2.1:12:1:121768101:1	120424788	120476777	D	leucine rich repeat containing 27 [Source:HGNC Symbol;Acc:HGNC:29346]
ENSCJAG00000010266	NOVEL	protein_coding	ENSCJAG00000010266	chromosome:C_jacchus3.2.1:2:1:204313951:1	59662985	59663744	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018907}  [Source:UniProtKB/TrEMBL;Acc:F7H5H6]
ENSCJAG00000010273	NOVEL	pseudogene	ENSCJAG00000010273	chromosome:C_jacchus3.2.1:2:1:204313951:1	59761195	59761710	R	<no descrition>
ENSCJAG00000010277	KNOWN_BY_PROJECTION	protein_coding	RASGEF1C	chromosome:C_jacchus3.2.1:2:1:204313951:1	59761777	59795785	R	RasGEF domain family, member 1C [Source:HGNC Symbol;Acc:HGNC:27400]
ENSCJAG00000013199	KNOWN_BY_PROJECTION	protein_coding	SVIL	chromosome:C_jacchus3.2.1:7:1:155834243:1	26647265	26929185	R	supervillin [Source:HGNC Symbol;Acc:HGNC:11480]
ENSCJAG00000032330	NOVEL	protein_coding	ENSCJAG00000032330	chromosome:C_jacchus3.2.1:7:1:155834243:1	151790275	151801082	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051703}  [Source:UniProtKB/TrEMBL;Acc:F6W099]
ENSCJAG00000010288	NOVEL	pseudogene	ENSCJAG00000010288	chromosome:C_jacchus3.2.1:2:1:204313951:1	59849145	59850237	D	<no descrition>
ENSCJAG00000034054	NOVEL	protein_coding	ENSCJAG00000034054	chromosome:C_jacchus3.2.1:7:1:155834243:1	151801476	151810200	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035820}  [Source:UniProtKB/TrEMBL;Acc:F7HCW4]
ENSCJAG00000006374	KNOWN_BY_PROJECTION	protein_coding	ILF3	chromosome:C_jacchus3.2.1:22:1:49145316:1	10078550	10117436	D	interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
ENSCJAG00000007834	KNOWN	protein_coding	KPNB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	109935251	109968743	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014743}  [Source:UniProtKB/TrEMBL;Acc:F7IN73]
ENSCJAG00000002452	KNOWN	protein_coding	PQBP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	47530215	47535840	D	Polyglutamine-binding protein 1 isoform 1 {ECO:0000313|EMBL:JAB05555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051320}  [Source:UniProtKB/TrEMBL;Acc:F6Z229]
ENSCJAG00000010293	KNOWN	protein_coding	MAPK9	chromosome:C_jacchus3.2.1:2:1:204313951:1	59920028	59976369	R	Mitogen-activated protein kinase 9 isoform beta2 {ECO:0000313|EMBL:JAB04003.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019017}  [Source:UniProtKB/TrEMBL;Acc:F6PKE3]
ENSCJAG00000035105	NOVEL	protein_coding	ENSCJAG00000035105	chromosome:C_jacchus3.2.1:18:1:47448759:1	2260851	2262346	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038206}  [Source:UniProtKB/TrEMBL;Acc:F7HQF0]
ENSCJAG00000013461	KNOWN_BY_PROJECTION	protein_coding	PCDH19	chromosome:C_jacchus3.2.1:X:1:142054208:1	89521798	89645487	R	protocadherin 19 [Source:HGNC Symbol;Acc:HGNC:14270]
ENSCJAG00000002505	KNOWN_BY_PROJECTION	protein_coding	FMO5	chromosome:C_jacchus3.2.1:18:1:47448759:1	2264088	2310980	D	flavin containing monooxygenase 5 [Source:HGNC Symbol;Acc:HGNC:3773]
ENSCJAG00000020471	NOVEL	protein_coding	ENSCJAG00000020471	chromosome:C_jacchus3.2.1:9:1:124281992:1	114507205	114523636	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038061}  [Source:UniProtKB/TrEMBL;Acc:F7IR35]
ENSCJAG00000004270	KNOWN_BY_PROJECTION	protein_coding	TNMD	chromosome:C_jacchus3.2.1:X:1:142054208:1	89799742	89814598	D	tenomodulin [Source:HGNC Symbol;Acc:HGNC:17757]
ENSCJAG00000000878	KNOWN	protein_coding	ANKRD6	chromosome:C_jacchus3.2.1:4:1:171630274:1	88664836	88732602	D	Ankyrin repeat domain-containing protein 6 isoform a {ECO:0000313|EMBL:JAB08538.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001529}  [Source:UniProtKB/TrEMBL;Acc:F6ZYS3]
ENSCJAG00000004288	KNOWN_BY_PROJECTION	protein_coding	TSPAN6	chromosome:C_jacchus3.2.1:X:1:142054208:1	89856320	89863137	R	tetraspanin 6 [Source:HGNC Symbol;Acc:HGNC:11858]
ENSCJAG00000031727	NOVEL	protein_coding	ENSCJAG00000031727	chromosome:C_jacchus3.2.1:5:1:159171411:1	109983017	109983947	D	<no descrition>
ENSCJAG00000007981	NOVEL	pseudogene	ENSCJAG00000007981	chromosome:C_jacchus3.2.1:5:1:159171411:1	109993449	109993975	D	<no descrition>
ENSCJAG00000006803	NOVEL	protein_coding	ENSCJAG00000006803	chromosome:C_jacchus3.2.1:10:1:132174527:1	59758899	59761047	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012593}  [Source:UniProtKB/TrEMBL;Acc:F7G0U5]
ENSCJAG00000014912	NOVEL	protein_coding	ENSCJAG00000014912	chromosome:C_jacchus3.2.1:12:1:121768101:1	120551350	120553530	D	<no descrition>
ENSCJAG00000032302	NOVEL	protein_coding	ENSCJAG00000032302	chromosome:C_jacchus3.2.1:10:1:132174527:1	59828777	59830030	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052261}  [Source:UniProtKB/TrEMBL;Acc:F7IJ35]
ENSCJAG00000012807	KNOWN_BY_PROJECTION	protein_coding	NHLH2	chromosome:C_jacchus3.2.1:7:1:155834243:1	151920676	151926274	R	nescient helix loop helix 2 [Source:HGNC Symbol;Acc:HGNC:7818]
ENSCJAG00000006806	KNOWN	protein_coding	NFKBIA	chromosome:C_jacchus3.2.1:10:1:132174527:1	59844928	59848125	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001007}  [Source:UniProtKB/TrEMBL;Acc:F7C1T1]
ENSCJAG00000010150	KNOWN_BY_PROJECTION	protein_coding	INPP5A	chromosome:C_jacchus3.2.1:12:1:121768101:1	120634427	120886565	D	inositol polyphosphate-5-phosphatase, 40kDa [Source:HGNC Symbol;Acc:HGNC:6076]
ENSCJAG00000011034	KNOWN	protein_coding	EIF4ENIF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	194249679	194306919	R	Eukaryotic translation initiation factor 4E nuclear import factor 1 (Predicted) {ECO:0000313|EMBL:ABZ10458.1}; Eukaryotic translation initiation factor 4E transporter isoform a {ECO:0000313|EMBL:JAB06619.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020470}  [Source:UniProtKB/TrEMBL;Acc:B0KWR5]
ENSCJAG00000012813	KNOWN_BY_PROJECTION	protein_coding	SLC22A15	chromosome:C_jacchus3.2.1:7:1:155834243:1	152069969	152158217	D	solute carrier family 22, member 15 [Source:HGNC Symbol;Acc:HGNC:20301]
ENSCJAG00000000905	KNOWN	protein_coding	LYRM2	chromosome:C_jacchus3.2.1:4:1:171630274:1	88737497	88739225	R	LYR motif-containing protein 2 {ECO:0000313|EMBL:JAB03792.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001532}  [Source:UniProtKB/TrEMBL;Acc:F6ZYH3]
ENSCJAG00000004321	KNOWN_BY_PROJECTION	protein_coding	SRPX2	chromosome:C_jacchus3.2.1:X:1:142054208:1	89870268	89897488	D	sushi-repeat containing protein, X-linked 2 [Source:HGNC Symbol;Acc:HGNC:30668]
ENSCJAG00000020484	KNOWN	protein_coding	EIF2B1	chromosome:C_jacchus3.2.1:9:1:124281992:1	114523734	114537730	R	Translation initiation factor eIF-2B subunit alpha {ECO:0000313|EMBL:JAB01827.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038074}  [Source:UniProtKB/TrEMBL;Acc:F7INQ9]
ENSCJAG00000006194	KNOWN_BY_PROJECTION	protein_coding	MAB21L3	chromosome:C_jacchus3.2.1:7:1:155834243:1	152210548	152232936	D	mab-21-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:26787]
ENSCJAG00000032927	NOVEL	protein_coding	ENSCJAG00000032927	chromosome:C_jacchus3.2.1:12:1:121768101:1	120865421	120865859	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044689}  [Source:UniProtKB/TrEMBL;Acc:F7HBK6]
ENSCJAG00000007985	KNOWN_BY_PROJECTION	protein_coding	NPEPPS	chromosome:C_jacchus3.2.1:5:1:159171411:1	109998845	110108153	R	aminopeptidase puromycin sensitive [Source:HGNC Symbol;Acc:HGNC:7900]
ENSCJAG00000010137	KNOWN_BY_PROJECTION	protein_coding	NKX6-2	chromosome:C_jacchus3.2.1:12:1:121768101:1	120887992	120889228	R	NK6 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:19321]
ENSCJAG00000000907	KNOWN_BY_PROJECTION	protein_coding	MDN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	88744372	88935046	R	MDN1, midasin homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:18302]
ENSCJAG00000006058	KNOWN_BY_PROJECTION	protein_coding	ATP1A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	152476682	152509472	D	ATPase, Na+/K+ transporting, alpha 1 polypeptide [Source:HGNC Symbol;Acc:HGNC:799]
ENSCJAG00000002479	KNOWN	protein_coding	SLC35A2	chromosome:C_jacchus3.2.1:X:1:142054208:1	47536135	47547272	R	UDP-galactose translocator isoform a {ECO:0000313|EMBL:JAB09602.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004528}  [Source:UniProtKB/TrEMBL;Acc:F7CK42]
ENSCJAG00000004343	KNOWN	protein_coding	SYTL4	chromosome:C_jacchus3.2.1:X:1:142054208:1	89900332	89926450	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049374}  [Source:UniProtKB/TrEMBL;Acc:F6XVI5]
ENSCJAG00000020493	KNOWN	protein_coding	GTF2H3	chromosome:C_jacchus3.2.1:9:1:124281992:1	114537792	114568750	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038085}  [Source:UniProtKB/TrEMBL;Acc:F7ILE0]
ENSCJAG00000002530	KNOWN	protein_coding	PRKAB2	chromosome:C_jacchus3.2.1:18:1:47448759:1	2316298	2330786	D	5'-AMP-activated protein kinase subunit beta-2 {ECO:0000313|EMBL:JAB05959.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004621}  [Source:UniProtKB/TrEMBL;Acc:F6YM87]
ENSCJAG00000033390	NOVEL	pseudogene	ENSCJAG00000033390	chromosome:C_jacchus3.2.1:X:1:142054208:1	90030083	90030576	R	<no descrition>
ENSCJAG00000006506	KNOWN	protein_coding	QTRT1	chromosome:C_jacchus3.2.1:22:1:49145316:1	10125751	10138343	D	Queuine tRNA-ribosyltransferase {ECO:0000256|RuleBase:RU003777}  [Source:UniProtKB/TrEMBL;Acc:F7GYQ9]
ENSCJAG00000035254	NOVEL	pseudogene	ENSCJAG00000035254	chromosome:C_jacchus3.2.1:18:1:47448759:1	2342485	2343144	R	<no descrition>
ENSCJAG00000004422	KNOWN_BY_PROJECTION	protein_coding	CSTF2	chromosome:C_jacchus3.2.1:X:1:142054208:1	90049741	90073617	D	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Source:HGNC Symbol;Acc:HGNC:2484]
ENSCJAG00000002553	NOVEL	pseudogene	ENSCJAG00000002553	chromosome:C_jacchus3.2.1:18:1:47448759:1	2349829	2351153	R	<no descrition>
ENSCJAG00000002558	NOVEL	pseudogene	ENSCJAG00000002558	chromosome:C_jacchus3.2.1:18:1:47448759:1	2372491	2373555	D	<no descrition>
ENSCJAG00000032364	KNOWN_BY_PROJECTION	protein_coding	SKP2	chromosome:C_jacchus3.2.1:18:1:47448759:1	2389524	2391285	D	S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:10901]
ENSCJAG00000010106	NOVEL	protein_coding	ENSCJAG00000010106	chromosome:C_jacchus3.2.1:12:1:121768101:1	120909906	120957924	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018630}  [Source:UniProtKB/TrEMBL;Acc:F7H0Q2]
ENSCJAG00000005528	NOVEL	pseudogene	ENSCJAG00000005528	chromosome:C_jacchus3.2.1:18:1:47448759:1	2447129	2447470	D	<no descrition>
ENSCJAG00000007720	NOVEL	pseudogene	ENSCJAG00000007720	chromosome:C_jacchus3.2.1:18:1:47448759:1	2487990	2489380	D	<no descrition>
ENSCJAG00000006813	NOVEL	pseudogene	ENSCJAG00000006813	chromosome:C_jacchus3.2.1:10:1:132174527:1	59904414	59905453	R	<no descrition>
ENSCJAG00000006814	NOVEL	protein_coding	ENSCJAG00000006814	chromosome:C_jacchus3.2.1:10:1:132174527:1	60007032	60007746	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012610}  [Source:UniProtKB/TrEMBL;Acc:F6QKW9]
ENSCJAG00000006816	KNOWN_BY_PROJECTION	protein_coding	INSM2	chromosome:C_jacchus3.2.1:10:1:132174527:1	60028273	60029985	D	insulinoma-associated 2 [Source:HGNC Symbol;Acc:HGNC:17539]
ENSCJAG00000010097	KNOWN_BY_PROJECTION	protein_coding	TBC1D2B	chromosome:C_jacchus3.2.1:18:1:47448759:1	2644781	2672978	R	TBC1 domain family, member 2B [Source:HGNC Symbol;Acc:HGNC:29183]
ENSCJAG00000010091	KNOWN_BY_PROJECTION	protein_coding	CFAP46	chromosome:C_jacchus3.2.1:12:1:121768101:1	121008603	121049273	R	cilia and flagella associated protein 46 [Source:HGNC Symbol;Acc:HGNC:25247]
ENSCJAG00000010359	KNOWN	protein_coding	GFPT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	59984012	60032565	R	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 {ECO:0000313|EMBL:JAB03903.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019137}  [Source:UniProtKB/TrEMBL;Acc:F6RLM6]
ENSCJAG00000010111	KNOWN_BY_PROJECTION	protein_coding	SH2D7	chromosome:C_jacchus3.2.1:18:1:47448759:1	2737712	2749012	D	SH2 domain containing 7 [Source:HGNC Symbol;Acc:HGNC:34549]
ENSCJAG00000002488	KNOWN	protein_coding	PIM2	chromosome:C_jacchus3.2.1:X:1:142054208:1	47548628	47554630	R	Serine/threonine-protein kinase pim-2 {ECO:0000313|EMBL:JAB08052.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004554}  [Source:UniProtKB/TrEMBL;Acc:F7C4B8]
ENSCJAG00000010115	KNOWN	protein_coding	CIB2	chromosome:C_jacchus3.2.1:18:1:47448759:1	2750157	2774330	R	Calcium and integrin-binding family member 2 isoform 1 {ECO:0000313|EMBL:JAB03279.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049618}  [Source:UniProtKB/TrEMBL;Acc:F7AER6]
ENSCJAG00000022561	KNOWN_BY_PROJECTION	protein_coding	GPR123	chromosome:C_jacchus3.2.1:12:1:121768101:1	121225521	121265572	D	G protein-coupled receptor 123 [Source:HGNC Symbol;Acc:HGNC:13838]
ENSCJAG00000035390	NOVEL	protein_coding	ENSCJAG00000035390	chromosome:C_jacchus3.2.1:2:1:204313951:1	60189574	60190520	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049024}  [Source:UniProtKB/TrEMBL;Acc:F6YJ15]
ENSCJAG00000008071	NOVEL	pseudogene	ENSCJAG00000008071	chromosome:C_jacchus3.2.1:5:1:159171411:1	110070422	110071376	D	<no descrition>
ENSCJAG00000020498	KNOWN_BY_PROJECTION	protein_coding	TCTN2	chromosome:C_jacchus3.2.1:9:1:124281992:1	114579331	114618760	D	tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
ENSCJAG00000006821	KNOWN_BY_PROJECTION	protein_coding	RALGAPA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	60032997	60325118	R	Ral GTPase activating protein, alpha subunit 1 (catalytic) [Source:HGNC Symbol;Acc:HGNC:17770]
ENSCJAG00000018704	KNOWN_BY_PROJECTION	protein_coding	TRIM7	chromosome:C_jacchus3.2.1:2:1:204313951:1	60275921	60288184	R	tripartite motif containing 7 [Source:HGNC Symbol;Acc:HGNC:16278]
ENSCJAG00000008080	KNOWN_BY_PROJECTION	protein_coding	MRPL45	chromosome:C_jacchus3.2.1:5:1:159171411:1	110141565	110163544	D	mitochondrial ribosomal protein L45 [Source:HGNC Symbol;Acc:HGNC:16651]
ENSCJAG00000002507	NOVEL	protein_coding	ENSCJAG00000002507	chromosome:C_jacchus3.2.1:X:1:142054208:1	47558863	47592157	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004573}  [Source:UniProtKB/TrEMBL;Acc:F7B698]
ENSCJAG00000011107	KNOWN	protein_coding	SFI1	chromosome:C_jacchus3.2.1:1:1:210400635:1	194312390	194441636	D	Protein SFI1 homolog  [Source:UniProtKB/Swiss-Prot;Acc:B0KWR6]
ENSCJAG00000012312	KNOWN_BY_PROJECTION	protein_coding	KNDC1	chromosome:C_jacchus3.2.1:12:1:121768101:1	121299101	121359042	D	kinase non-catalytic C-lobe domain (KIND) containing 1 [Source:HGNC Symbol;Acc:HGNC:29374]
ENSCJAG00000004488	KNOWN	protein_coding	NOX1	chromosome:C_jacchus3.2.1:X:1:142054208:1	90075407	90110786	R	NADPH oxidase 1 isoform 1 {ECO:0000313|EMBL:JAB08217.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008257}  [Source:UniProtKB/TrEMBL;Acc:F7IAY7]
ENSCJAG00000010136	KNOWN	protein_coding	IDH3A	chromosome:C_jacchus3.2.1:18:1:47448759:1	2790699	2824584	D	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial {ECO:0000313|EMBL:JAB10485.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018639}  [Source:UniProtKB/TrEMBL;Acc:F7H0M6]
ENSCJAG00000002523	KNOWN_BY_PROJECTION	protein_coding	KCND1	chromosome:C_jacchus3.2.1:X:1:142054208:1	47597647	47602686	R	potassium channel, voltage gated Shal related subfamily D, member 1 [Source:HGNC Symbol;Acc:HGNC:6237]
ENSCJAG00000002531	KNOWN_BY_PROJECTION	protein_coding	GRIPAP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	47609181	47638593	R	GRIP1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18706]
ENSCJAG00000006049	NOVEL	protein_coding	ENSCJAG00000006049	chromosome:C_jacchus3.2.1:7:1:155834243:1	152559002	152560053	D	Stathmin {ECO:0000256|RuleBase:RU004388}  [Source:UniProtKB/TrEMBL;Acc:F7I6I4]
ENSCJAG00000006034	KNOWN_BY_PROJECTION	protein_coding	CD58	chromosome:C_jacchus3.2.1:7:1:155834243:1	152639576	152690829	R	CD58 molecule [Source:HGNC Symbol;Acc:HGNC:1688]
ENSCJAG00000020504	KNOWN	protein_coding	ATP6V0A2	chromosome:C_jacchus3.2.1:9:1:124281992:1	114622702	114671228	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038113}; V-type proton ATPase 116 kDa subunit a isoform 2 {ECO:0000313|EMBL:JAB09546.1}  [Source:UniProtKB/TrEMBL;Acc:F7IBX3]
ENSCJAG00000008100	KNOWN_BY_PROJECTION	protein_coding	GPR179	chromosome:C_jacchus3.2.1:5:1:159171411:1	110167285	110184628	R	G protein-coupled receptor 179 [Source:HGNC Symbol;Acc:HGNC:31371]
ENSCJAG00000018733	KNOWN_BY_PROJECTION	protein_coding	TRIM41	chromosome:C_jacchus3.2.1:2:1:204313951:1	60306363	60319647	D	tripartite motif containing 41 [Source:HGNC Symbol;Acc:HGNC:19013]
ENSCJAG00000008108	KNOWN	protein_coding	SOCS7	chromosome:C_jacchus3.2.1:5:1:159171411:1	110203331	110234681	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014965}  [Source:UniProtKB/TrEMBL;Acc:F7ISW4]
ENSCJAG00000008111	NOVEL	protein_coding	ENSCJAG00000008111	chromosome:C_jacchus3.2.1:5:1:159171411:1	110231254	110232749	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014967}  [Source:UniProtKB/TrEMBL;Acc:F7ISW2]
ENSCJAG00000008112	KNOWN	protein_coding	ARHGAP23	chromosome:C_jacchus3.2.1:5:1:159171411:1	110333834	110366653	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014292}  [Source:UniProtKB/TrEMBL;Acc:F7IQX4]
ENSCJAG00000006313	KNOWN	protein_coding	TMED1	chromosome:C_jacchus3.2.1:22:1:49145316:1	10254143	10258017	R	Transmembrane emp24 domain-containing protein 1 {ECO:0000313|EMBL:JAB02255.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011630}  [Source:UniProtKB/TrEMBL;Acc:F7D6C1]
ENSCJAG00000002587	NOVEL	pseudogene	ENSCJAG00000002587	chromosome:C_jacchus3.2.1:X:1:142054208:1	47648691	47649616	D	<no descrition>
ENSCJAG00000013253	KNOWN	protein_coding	KIAA1462	chromosome:C_jacchus3.2.1:7:1:155834243:1	27167886	27200947	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024347}  [Source:UniProtKB/TrEMBL;Acc:F7H8F8]
ENSCJAG00000006041	NOVEL	protein_coding	ENSCJAG00000006041	chromosome:C_jacchus3.2.1:7:1:155834243:1	152651847	152652954	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011106}  [Source:UniProtKB/TrEMBL;Acc:F7I6J0]
ENSCJAG00000005071	KNOWN_BY_PROJECTION	protein_coding	UTF1	chromosome:C_jacchus3.2.1:12:1:121768101:1	121365021	121366209	D	undifferentiated embryonic cell transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12634]
ENSCJAG00000013270	KNOWN_BY_PROJECTION	protein_coding	MTPAP	chromosome:C_jacchus3.2.1:7:1:155834243:1	27418616	27450653	R	mitochondrial poly(A) polymerase [Source:HGNC Symbol;Acc:HGNC:25532]
ENSCJAG00000002597	KNOWN_BY_PROJECTION	protein_coding	TFE3	chromosome:C_jacchus3.2.1:X:1:142054208:1	47658718	47673447	R	transcription factor binding to IGHM enhancer 3 [Source:HGNC Symbol;Acc:HGNC:11752]
ENSCJAG00000006309	KNOWN	protein_coding	C19ORF38	chromosome:C_jacchus3.2.1:22:1:49145316:1	10270256	10296933	D	Protein HIDE1 {ECO:0000313|EMBL:JAB37759.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045730}  [Source:UniProtKB/TrEMBL;Acc:F6T309]
ENSCJAG00000006006	KNOWN_BY_PROJECTION	protein_coding	IGSF3	chromosome:C_jacchus3.2.1:7:1:155834243:1	152695182	152790577	R	immunoglobulin superfamily, member 3 [Source:HGNC Symbol;Acc:HGNC:5950]
ENSCJAG00000004917	KNOWN_BY_PROJECTION	protein_coding	SPRN	chromosome:C_jacchus3.2.1:12:1:121768101:1	121397305	121572587	R	shadow of prion protein homolog (zebrafish) [Source:HGNC Symbol;Acc:HGNC:16871]
ENSCJAG00000002605	KNOWN_BY_PROJECTION	protein_coding	CCDC120	chromosome:C_jacchus3.2.1:X:1:142054208:1	47691970	47703316	D	coiled-coil domain containing 120 [Source:HGNC Symbol;Acc:HGNC:28910]
ENSCJAG00000008123	KNOWN	protein_coding	SRCIN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	110386202	110461271	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045123}  [Source:UniProtKB/TrEMBL;Acc:F6SKH9]
ENSCJAG00000004565	KNOWN_BY_PROJECTION	protein_coding	ARL13A	chromosome:C_jacchus3.2.1:X:1:142054208:1	90119932	90221736	D	ADP-ribosylation factor-like 13A [Source:HGNC Symbol;Acc:HGNC:31709]
ENSCJAG00000006228	KNOWN_BY_PROJECTION	protein_coding	CARM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	10298655	10352831	D	coactivator-associated arginine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23393]
ENSCJAG00000013285	KNOWN	protein_coding	MAP3K8	chromosome:C_jacchus3.2.1:7:1:155834243:1	27479362	27508803	D	Mitogen-activated protein kinase kinase kinase 8 {ECO:0000313|EMBL:JAB08472.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024416}  [Source:UniProtKB/TrEMBL;Acc:F7FA86]
ENSCJAG00000005082	KNOWN_BY_PROJECTION	protein_coding	ADAM8	chromosome:C_jacchus3.2.1:12:1:121768101:1	121401907	121418266	R	ADAM metallopeptidase domain 8 [Source:HGNC Symbol;Acc:HGNC:215]
ENSCJAG00000013306	NOVEL	protein_coding	ENSCJAG00000013306	chromosome:C_jacchus3.2.1:7:1:155834243:1	27622273	27645190	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024432}  [Source:UniProtKB/TrEMBL;Acc:F7EX21]
ENSCJAG00000006294	KNOWN_BY_PROJECTION	protein_coding	YIPF2	chromosome:C_jacchus3.2.1:22:1:49145316:1	10352903	10358283	R	Yip1 domain family, member 2 [Source:HGNC Symbol;Acc:HGNC:28476]
ENSCJAG00000018752	KNOWN_BY_PROJECTION	protein_coding	GNB2L1	chromosome:C_jacchus3.2.1:2:1:204313951:1	60321094	60327083	R	guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 [Source:HGNC Symbol;Acc:HGNC:4399]
ENSCJAG00000010176	KNOWN	protein_coding	ACSBG1	chromosome:C_jacchus3.2.1:18:1:47448759:1	2822634	2892532	R	Long-chain-fatty-acid--CoA ligase ACSBG1 isoform 1 {ECO:0000313|EMBL:JAB16554.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018751}  [Source:UniProtKB/TrEMBL;Acc:F7EBS2]
ENSCJAG00000033250	NOVEL	protein_coding	ENSCJAG00000033250	chromosome:C_jacchus3.2.1:9:1:124281992:1	114696067	114728774	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043170}  [Source:UniProtKB/TrEMBL;Acc:F7IJV7]
ENSCJAG00000006287	KNOWN	protein_coding	C19ORF52	chromosome:C_jacchus3.2.1:22:1:49145316:1	10358360	10359819	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011574}; Uncharacterized protein C19orf52 {ECO:0000313|EMBL:JAB05011.1}  [Source:UniProtKB/TrEMBL;Acc:F7I695]
ENSCJAG00000013316	KNOWN	protein_coding	ZNF438	chromosome:C_jacchus3.2.1:7:1:155834243:1	27813703	27982797	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024451}; Zinc finger protein 438 isoform a {ECO:0000313|EMBL:JAB15388.1}  [Source:UniProtKB/TrEMBL;Acc:F7EHB0]
ENSCJAG00000004559	KNOWN	protein_coding	XKRX	chromosome:C_jacchus3.2.1:X:1:142054208:1	90161283	90177583	R	XK-related protein {ECO:0000256|RuleBase:RU910716}  [Source:UniProtKB/TrEMBL;Acc:F6ZEJ4]
ENSCJAG00000004570	KNOWN	protein_coding	TRMT2B	chromosome:C_jacchus3.2.1:X:1:142054208:1	90245017	90289956	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008325}; tRNA (Uracil(54)-C(5))-methyltransferase homolog isoform a {ECO:0000313|EMBL:JAB02009.1}  [Source:UniProtKB/TrEMBL;Acc:F7HWQ6]
ENSCJAG00000008169	KNOWN_BY_PROJECTION	protein_coding	MLLT6	chromosome:C_jacchus3.2.1:5:1:159171411:1	110416279	110597588	D	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
ENSCJAG00000004600	KNOWN	protein_coding	TMEM35	chromosome:C_jacchus3.2.1:X:1:142054208:1	90316900	90337205	D	Transmembrane protein 35 {ECO:0000313|EMBL:JAB15339.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008341}  [Source:UniProtKB/TrEMBL;Acc:F7HTX8]
ENSCJAG00000005124	KNOWN_BY_PROJECTION	protein_coding	TUBGCP2	chromosome:C_jacchus3.2.1:12:1:121768101:1	121421347	121457577	R	tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
ENSCJAG00000013332	KNOWN	protein_coding	ZEB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	28240615	28461066	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042331}; Zinc finger E-box-binding homeobox 1 isoform a {ECO:0000313|EMBL:JAB27447.1}  [Source:UniProtKB/TrEMBL;Acc:F6WB46]
ENSCJAG00000008212	KNOWN	protein_coding	CISD3	chromosome:C_jacchus3.2.1:5:1:159171411:1	110601333	110606466	D	CDGSH iron-sulfur domain-containing protein 3, mitochondrial {ECO:0000313|EMBL:JAB23188.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043059}  [Source:UniProtKB/TrEMBL;Acc:F7HWD1]
ENSCJAG00000005936	KNOWN	protein_coding	SMARCA4	chromosome:C_jacchus3.2.1:22:1:49145316:1	10404426	10485215	D	Transcription activator BRG1 isoform C {ECO:0000313|EMBL:JAB29653.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011400}  [Source:UniProtKB/TrEMBL;Acc:F7HUH7]
ENSCJAG00000004612	KNOWN_BY_PROJECTION	protein_coding	CENPI	chromosome:C_jacchus3.2.1:X:1:142054208:1	90339026	90418271	D	centromere protein I [Source:HGNC Symbol;Acc:HGNC:3968]
ENSCJAG00000008215	KNOWN	protein_coding	PCGF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	110604764	110619502	R	Polycomb group RING finger protein 2 {ECO:0000313|EMBL:JAB09184.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050212}  [Source:UniProtKB/TrEMBL;Acc:F7FCE4]
ENSCJAG00000010194	KNOWN_BY_PROJECTION	protein_coding	DNAJA4	chromosome:C_jacchus3.2.1:18:1:47448759:1	2922248	2939476	D	DnaJ (Hsp40) homolog, subfamily A, member 4 [Source:HGNC Symbol;Acc:HGNC:14885]
ENSCJAG00000002630	KNOWN_BY_PROJECTION	protein_coding	PRAF2	chromosome:C_jacchus3.2.1:X:1:142054208:1	47706609	47709461	R	PRA1 domain family, member 2 [Source:HGNC Symbol;Acc:HGNC:28911]
ENSCJAG00000005982	KNOWN	protein_coding	CD2	chromosome:C_jacchus3.2.1:7:1:155834243:1	152867441	152883018	D	Callithrix jacchus CD2 molecule (CD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001257217]
ENSCJAG00000001726	NOVEL	protein_coding	ENSCJAG00000001726	chromosome:C_jacchus3.2.1:1:1:210400635:1	194400502	194403357	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003081}  [Source:UniProtKB/TrEMBL;Acc:F7FG55]
ENSCJAG00000008246	KNOWN_BY_PROJECTION	protein_coding	PSMB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	110624364	110638071	D	proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:HGNC:9540]
ENSCJAG00000020511	KNOWN_BY_PROJECTION	protein_coding	DNAH10	chromosome:C_jacchus3.2.1:9:1:124281992:1	114751421	114855438	D	dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
ENSCJAG00000004681	NOVEL	pseudogene	ENSCJAG00000004681	chromosome:C_jacchus3.2.1:X:1:142054208:1	90439075	90439532	R	<no descrition>
ENSCJAG00000011154	KNOWN	protein_coding	PISD	chromosome:C_jacchus3.2.1:1:1:210400635:1	194442413	194484642	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047604}  [Source:UniProtKB/TrEMBL;Acc:F7HD01]
ENSCJAG00000008251	KNOWN	protein_coding	PIP4K2B	chromosome:C_jacchus3.2.1:5:1:159171411:1	110644886	110678391	R	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta {ECO:0000313|EMBL:JAB10998.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015284}  [Source:UniProtKB/TrEMBL;Acc:F7FTM0]
ENSCJAG00000004685	KNOWN_BY_PROJECTION	protein_coding	DRP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	90484813	90515555	D	dystrophin related protein 2 [Source:HGNC Symbol;Acc:HGNC:3032]
ENSCJAG00000005961	KNOWN_BY_PROJECTION	protein_coding	PTGFRN	chromosome:C_jacchus3.2.1:7:1:155834243:1	153059441	153104938	D	prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
ENSCJAG00000010208	KNOWN	protein_coding	WDR61	chromosome:C_jacchus3.2.1:18:1:47448759:1	2940560	2958114	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018865}; WD repeat-containing protein 61 {ECO:0000313|EMBL:JAB02233.1}  [Source:UniProtKB/TrEMBL;Acc:F7HG44]
ENSCJAG00000033715	NOVEL	protein_coding	ENSCJAG00000033715	chromosome:C_jacchus3.2.1:4:1:171630274:1	88748483	88761495	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021385}  [Source:UniProtKB/TrEMBL;Acc:F6T6I2]
ENSCJAG00000020851	NOVEL	protein_coding	ENSCJAG00000020851	chromosome:C_jacchus3.2.1:4:1:171630274:1	88764757	88779494	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022945}  [Source:UniProtKB/TrEMBL;Acc:F7ICW7]
ENSCJAG00000002633	KNOWN	protein_coding	WDR45	chromosome:C_jacchus3.2.1:X:1:142054208:1	47710584	47716044	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043538}; WD repeat domain phosphoinositide-interacting protein 4 isoform 2 {ECO:0000313|EMBL:JAB09886.1}  [Source:UniProtKB/TrEMBL;Acc:F7HLR4]
ENSCJAG00000000992	KNOWN_BY_PROJECTION	protein_coding	CASP8AP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	88940906	88972785	D	caspase 8 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1510]
ENSCJAG00000018803	KNOWN_BY_PROJECTION	protein_coding	BTNL9	chromosome:C_jacchus3.2.1:2:1:204313951:1	60456212	60470014	R	butyrophilin-like 9 [Source:HGNC Symbol;Acc:HGNC:24176]
ENSCJAG00000001005	KNOWN_BY_PROJECTION	protein_coding	GJA10	chromosome:C_jacchus3.2.1:4:1:171630274:1	88994945	88997260	D	gap junction protein, alpha 10, 62kDa [Source:HGNC Symbol;Acc:HGNC:16995]
ENSCJAG00000004710	KNOWN_BY_PROJECTION	protein_coding	TAF7L	chromosome:C_jacchus3.2.1:X:1:142054208:1	90524315	90553378	R	TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa [Source:HGNC Symbol;Acc:HGNC:11548]
ENSCJAG00000013435	KNOWN_BY_PROJECTION	protein_coding	ARHGAP12	chromosome:C_jacchus3.2.1:7:1:155834243:1	28637214	28830495	R	Rho GTPase activating protein 12 [Source:HGNC Symbol;Acc:HGNC:16348]
ENSCJAG00000001013	KNOWN_BY_PROJECTION	protein_coding	BACH2	chromosome:C_jacchus3.2.1:4:1:171630274:1	89013047	89418920	R	BTB and CNC homology 1, basic leucine zipper transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:14078]
ENSCJAG00000004723	KNOWN	protein_coding	TIMM8A	chromosome:C_jacchus3.2.1:X:1:142054208:1	90585926	90589869	R	Mitochondrial import inner membrane translocase subunit Tim8 A isoform 1 {ECO:0000313|EMBL:JAB05865.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050886}  [Source:UniProtKB/TrEMBL;Acc:F7EW74]
ENSCJAG00000008289	KNOWN	protein_coding	CWC25	chromosome:C_jacchus3.2.1:5:1:159171411:1	110680115	110702960	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015318}  [Source:UniProtKB/TrEMBL;Acc:F7EMA4]
ENSCJAG00000031254	NOVEL	pseudogene	ENSCJAG00000031254	chromosome:C_jacchus3.2.1:7:1:155834243:1	153109713	153110727	D	<no descrition>
ENSCJAG00000002655	NOVEL	pseudogene	ENSCJAG00000002655	chromosome:C_jacchus3.2.1:X:1:142054208:1	47726915	47727499	R	<no descrition>
ENSCJAG00000002656	KNOWN	protein_coding	GPKOW	chromosome:C_jacchus3.2.1:X:1:142054208:1	47756195	47766273	R	G patch domain and KOW motifs-containing protein {ECO:0000313|EMBL:JAB16028.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004854}  [Source:UniProtKB/TrEMBL;Acc:F6Y066]
ENSCJAG00000008309	KNOWN_BY_PROJECTION	protein_coding	C17orf98	chromosome:C_jacchus3.2.1:5:1:159171411:1	110709769	110716016	R	chromosome 17 open reading frame 98 [Source:HGNC Symbol;Acc:HGNC:34492]
ENSCJAG00000010244	NOVEL	pseudogene	ENSCJAG00000010244	chromosome:C_jacchus3.2.1:18:1:47448759:1	3007772	3010373	R	<no descrition>
ENSCJAG00000008311	KNOWN_BY_PROJECTION	protein_coding	RPL23	chromosome:C_jacchus3.2.1:5:1:159171411:1	110727038	110733017	R	ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
ENSCJAG00000010248	KNOWN	protein_coding	CRABP1	chromosome:C_jacchus3.2.1:18:1:47448759:1	3008896	3016807	D	Cellular retinoic acid-binding protein 1 {ECO:0000313|EMBL:JAB15202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018886}  [Source:UniProtKB/TrEMBL;Acc:F7HB22]
ENSCJAG00000020523	KNOWN_BY_PROJECTION	protein_coding	CCDC92	chromosome:C_jacchus3.2.1:9:1:124281992:1	114859998	114866323	R	coiled-coil domain containing 92 [Source:HGNC Symbol;Acc:HGNC:29563]
ENSCJAG00000020528	KNOWN	protein_coding	ZNF664	chromosome:C_jacchus3.2.1:9:1:124281992:1	114893855	114936997	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049262}; Zinc finger protein 664 {ECO:0000313|EMBL:JAB21680.1}  [Source:UniProtKB/TrEMBL;Acc:F6UVW3]
ENSCJAG00000004727	KNOWN_BY_PROJECTION	protein_coding	BTK	chromosome:C_jacchus3.2.1:X:1:142054208:1	90590793	90630029	R	Bruton agammaglobulinemia tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:1133]
ENSCJAG00000012305	KNOWN	protein_coding	ZNF664-FAM101A	chromosome:C_jacchus3.2.1:9:1:124281992:1	115230069	115250152	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022538}  [Source:UniProtKB/TrEMBL;Acc:F7ID73]
ENSCJAG00000001026	KNOWN_BY_PROJECTION	protein_coding	MAP3K7	chromosome:C_jacchus3.2.1:4:1:171630274:1	89664765	89740013	R	mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
ENSCJAG00000010259	KNOWN_BY_PROJECTION	protein_coding	IREB2	chromosome:C_jacchus3.2.1:18:1:47448759:1	3123099	3185383	D	iron-responsive element binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6115]
ENSCJAG00000011163	KNOWN	protein_coding	PRR14L	chromosome:C_jacchus3.2.1:1:1:210400635:1	194504772	194557533	R	Protein PRR14L {ECO:0000313|EMBL:JAB49301.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020570}  [Source:UniProtKB/TrEMBL;Acc:F7GJQ7]
ENSCJAG00000002157	NOVEL	protein_coding	ENSCJAG00000002157	chromosome:C_jacchus3.2.1:1:1:210400635:1	194543232	194555855	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003868}  [Source:UniProtKB/TrEMBL;Acc:F7GNW6]
ENSCJAG00000005249	KNOWN	protein_coding	PAOX	chromosome:C_jacchus3.2.1:12:1:121768101:1	121453722	121534757	D	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform 1 {ECO:0000313|EMBL:JAB13631.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009642}  [Source:UniProtKB/TrEMBL;Acc:F7FZ74]
ENSCJAG00000005944	KNOWN_BY_PROJECTION	protein_coding	CD101	chromosome:C_jacchus3.2.1:7:1:155834243:1	153120289	153158537	D	CD101 molecule [Source:HGNC Symbol;Acc:HGNC:5949]
ENSCJAG00000008328	KNOWN_BY_PROJECTION	protein_coding	LASP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	110757725	110815085	D	LIM and SH3 protein 1 [Source:HGNC Symbol;Acc:HGNC:6513]
ENSCJAG00000018839	KNOWN_BY_PROJECTION	protein_coding	ZFP62	chromosome:C_jacchus3.2.1:2:1:204313951:1	60517526	60530580	D	ZFP62 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23241]
ENSCJAG00000008353	NOVEL	pseudogene	ENSCJAG00000008353	chromosome:C_jacchus3.2.1:5:1:159171411:1	110765294	110765760	R	<no descrition>
ENSCJAG00000008357	NOVEL	pseudogene	ENSCJAG00000008357	chromosome:C_jacchus3.2.1:5:1:159171411:1	110809078	110809955	D	<no descrition>
ENSCJAG00000008361	KNOWN_BY_PROJECTION	protein_coding	FBXO47	chromosome:C_jacchus3.2.1:5:1:159171411:1	110825704	110855885	R	F-box protein 47 [Source:HGNC Symbol;Acc:HGNC:31969]
ENSCJAG00000018845	KNOWN	protein_coding	MGAT1	chromosome:C_jacchus3.2.1:2:1:204313951:1	60562554	60588313	D	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase {ECO:0000313|EMBL:JAB07161.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034995}  [Source:UniProtKB/TrEMBL;Acc:F7I3E4]
ENSCJAG00000011169	KNOWN_BY_PROJECTION	protein_coding	DEPDC5	chromosome:C_jacchus3.2.1:1:1:210400635:1	194573982	194738908	D	DEP domain containing 5 [Source:HGNC Symbol;Acc:HGNC:18423]
ENSCJAG00000008378	NOVEL	protein_coding	ENSCJAG00000008378	chromosome:C_jacchus3.2.1:5:1:159171411:1	110886229	110888087	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015417}  [Source:UniProtKB/TrEMBL;Acc:F7GZS3]
ENSCJAG00000008380	KNOWN	protein_coding	PLXDC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	110927472	111014999	R	Plexin domain-containing protein 1 {ECO:0000313|EMBL:JAB23165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015458}  [Source:UniProtKB/TrEMBL;Acc:F7GPE0]
ENSCJAG00000005907	KNOWN	protein_coding	LDLR	chromosome:C_jacchus3.2.1:22:1:49145316:1	10518266	10560321	D	Low-density lipoprotein receptor isoform 1 {ECO:0000313|EMBL:JAB05713.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051207}  [Source:UniProtKB/TrEMBL;Acc:F6W4Q9]
ENSCJAG00000005909	KNOWN_BY_PROJECTION	protein_coding	TTF2	chromosome:C_jacchus3.2.1:7:1:155834243:1	153182649	153235799	D	transcription termination factor, RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:12398]
ENSCJAG00000010363	KNOWN	protein_coding	HYKK	chromosome:C_jacchus3.2.1:18:1:47448759:1	3190877	3219366	D	Hydroxylysine kinase isoform 1 {ECO:0000313|EMBL:JAB02397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019097}  [Source:UniProtKB/TrEMBL;Acc:F6SK47]
ENSCJAG00000011676	KNOWN_BY_PROJECTION	protein_coding	NCOR2	chromosome:C_jacchus3.2.1:9:1:124281992:1	115259480	115434350	R	nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]
ENSCJAG00000002679	KNOWN_BY_PROJECTION	protein_coding	MAGIX	chromosome:C_jacchus3.2.1:X:1:142054208:1	47794754	47799714	D	MAGI family member, X-linked [Source:HGNC Symbol;Acc:HGNC:30006]
ENSCJAG00000032260	NOVEL	protein_coding	ENSCJAG00000032260	chromosome:C_jacchus3.2.1:X:1:142054208:1	90613695	90614426	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044305}  [Source:UniProtKB/TrEMBL;Acc:F7GRI2]
ENSCJAG00000011683	NOVEL	pseudogene	ENSCJAG00000011683	chromosome:C_jacchus3.2.1:9:1:124281992:1	115379389	115380240	R	<no descrition>
ENSCJAG00000004864	NOVEL	protein_coding	ENSCJAG00000004864	chromosome:C_jacchus3.2.1:X:1:142054208:1	90635605	90640687	D	<no descrition>
ENSCJAG00000008419	KNOWN_BY_PROJECTION	protein_coding	CACNB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	111036176	111055212	R	calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
ENSCJAG00000033848	NOVEL	protein_coding	ENSCJAG00000033848	chromosome:C_jacchus3.2.1:9:1:124281992:1	115454846	115457643	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050877}  [Source:UniProtKB/TrEMBL;Acc:F7F8T3]
ENSCJAG00000005933	NOVEL	pseudogene	ENSCJAG00000005933	chromosome:C_jacchus3.2.1:22:1:49145316:1	10524735	10525246	R	<no descrition>
ENSCJAG00000011642	KNOWN_BY_PROJECTION	protein_coding	SCARB1	chromosome:C_jacchus3.2.1:9:1:124281992:1	115748922	115782483	R	scavenger receptor class B, member 1 [Source:HGNC Symbol;Acc:HGNC:1664]
ENSCJAG00000004865	KNOWN	protein_coding	GLA	chromosome:C_jacchus3.2.1:X:1:142054208:1	90640837	90651315	R	Alpha-galactosidase A {ECO:0000313|EMBL:JAB03654.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008942}  [Source:UniProtKB/TrEMBL;Acc:F7I5N7]
ENSCJAG00000002681	KNOWN_BY_PROJECTION	protein_coding	PLP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	47804303	47807461	D	proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:HGNC:9087]
ENSCJAG00000006891	KNOWN	protein_coding	BRMS1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	60344531	60395144	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012810}  [Source:UniProtKB/TrEMBL;Acc:F6PXQ9]
ENSCJAG00000018848	KNOWN_BY_PROJECTION	protein_coding	ZNF354B	chromosome:C_jacchus3.2.1:2:1:204313951:1	60776351	60798144	D	zinc finger protein 354B [Source:HGNC Symbol;Acc:HGNC:17197]
ENSCJAG00000002694	KNOWN_BY_PROJECTION	protein_coding	PRICKLE3	chromosome:C_jacchus3.2.1:X:1:142054208:1	47808048	47817687	R	prickle homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:6645]
ENSCJAG00000010367	NOVEL	pseudogene	ENSCJAG00000010367	chromosome:C_jacchus3.2.1:18:1:47448759:1	3248110	3248365	D	<no descrition>
ENSCJAG00000005896	KNOWN_BY_PROJECTION	protein_coding	SPC24	chromosome:C_jacchus3.2.1:22:1:49145316:1	10578650	10586778	R	SPC24, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:26913]
ENSCJAG00000022258	KNOWN_BY_PROJECTION	protein_coding	ZFP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	60812037	60859100	D	ZFP2 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:26138]
ENSCJAG00000010369	KNOWN	protein_coding	ENSCJAG00000010369	chromosome:C_jacchus3.2.1:18:1:47448759:1	3250106	3260077	D	Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}  [Source:UniProtKB/TrEMBL;Acc:F6QQJ2]
ENSCJAG00000005893	NOVEL	pseudogene	ENSCJAG00000005893	chromosome:C_jacchus3.2.1:22:1:49145316:1	10597401	10597699	R	<no descrition>
ENSCJAG00000004908	KNOWN	protein_coding	HNRNPH2	chromosome:C_jacchus3.2.1:X:1:142054208:1	90651505	90657473	D	Heterogeneous nuclear ribonucleoprotein H2 {ECO:0000313|EMBL:JAB17134.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008959}  [Source:UniProtKB/TrEMBL;Acc:F7I5M7]
ENSCJAG00000021403	KNOWN	protein_coding	UBC	chromosome:C_jacchus3.2.1:9:1:124281992:1	115888849	115890832	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039830}  [Source:UniProtKB/TrEMBL;Acc:F7G432]
ENSCJAG00000018857	KNOWN	protein_coding	ZNF454	chromosome:C_jacchus3.2.1:2:1:204313951:1	60866496	60893230	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035029}; Zinc finger protein 454 {ECO:0000313|EMBL:JAB24777.1}  [Source:UniProtKB/TrEMBL;Acc:F7IG11]
ENSCJAG00000005881	KNOWN	protein_coding	KANK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	10597818	10633074	R	KN motif and ankyrin repeat domain-containing protein 2 isoform 2 {ECO:0000313|EMBL:JAB08184.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010816}  [Source:UniProtKB/TrEMBL;Acc:F7I179]
ENSCJAG00000021400	KNOWN_BY_PROJECTION	protein_coding	DHX37	chromosome:C_jacchus3.2.1:9:1:124281992:1	115919178	115966336	R	DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Source:HGNC Symbol;Acc:HGNC:17210]
ENSCJAG00000013981	KNOWN_BY_PROJECTION	protein_coding	ARMCX4	chromosome:C_jacchus3.2.1:X:1:142054208:1	90733236	90734971	D	armadillo repeat containing, X-linked 4 [Source:HGNC Symbol;Acc:HGNC:28615]
ENSCJAG00000019667	KNOWN_BY_PROJECTION	protein_coding	ARMCX1	chromosome:C_jacchus3.2.1:X:1:142054208:1	90783782	90784887	D	armadillo repeat containing, X-linked 1 [Source:HGNC Symbol;Acc:HGNC:18073]
ENSCJAG00000018865	KNOWN_BY_PROJECTION	protein_coding	GRM6	chromosome:C_jacchus3.2.1:2:1:204313951:1	60905663	60919052	R	glutamate receptor, metabotropic 6 [Source:HGNC Symbol;Acc:HGNC:4598]
ENSCJAG00000010409	KNOWN_BY_PROJECTION	protein_coding	CHRNA5	chromosome:C_jacchus3.2.1:18:1:47448759:1	3277654	3306622	D	cholinergic receptor, nicotinic, alpha 5 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1959]
ENSCJAG00000006936	NOVEL	protein_coding	ENSCJAG00000006936	chromosome:C_jacchus3.2.1:10:1:132174527:1	60507214	60507871	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012836}  [Source:UniProtKB/TrEMBL;Acc:F6PMT3]
ENSCJAG00000002714	KNOWN_BY_PROJECTION	protein_coding	SYP	chromosome:C_jacchus3.2.1:X:1:142054208:1	47830633	47840358	R	synaptophysin [Source:HGNC Symbol;Acc:HGNC:11506]
ENSCJAG00000019673	KNOWN	protein_coding	ARMCX6	chromosome:C_jacchus3.2.1:X:1:142054208:1	90827050	90829923	R	Protein ARMCX6 {ECO:0000313|EMBL:JAB03558.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036524}  [Source:UniProtKB/TrEMBL;Acc:F7GMC7]
ENSCJAG00000013540	KNOWN	protein_coding	KIF5B	chromosome:C_jacchus3.2.1:7:1:155834243:1	28892465	28940812	R	Kinesin-1 heavy chain {ECO:0000313|EMBL:JAB09577.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025069}  [Source:UniProtKB/TrEMBL;Acc:F6YJP5]
ENSCJAG00000021398	KNOWN	protein_coding	BRI3BP	chromosome:C_jacchus3.2.1:9:1:124281992:1	115973780	116006272	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039824}  [Source:UniProtKB/TrEMBL;Acc:F7GFT3]
ENSCJAG00000019676	KNOWN	protein_coding	ARMCX3	chromosome:C_jacchus3.2.1:X:1:142054208:1	90835112	90839768	D	Armadillo repeat-containing X-linked protein 3 {ECO:0000313|EMBL:JAB06882.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036531}  [Source:UniProtKB/TrEMBL;Acc:F7GD88]
ENSCJAG00000006938	KNOWN	protein_coding	MBIP	chromosome:C_jacchus3.2.1:10:1:132174527:1	60846098	60873511	R	MAP3K12-binding inhibitory protein 1 isoform 1 {ECO:0000313|EMBL:JAB04445.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012943}  [Source:UniProtKB/TrEMBL;Acc:F6RQ22]
ENSCJAG00000010437	KNOWN_BY_PROJECTION	protein_coding	CHRNA3	chromosome:C_jacchus3.2.1:18:1:47448759:1	3305961	3402834	R	cholinergic receptor, nicotinic, alpha 3 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1957]
ENSCJAG00000021394	KNOWN_BY_PROJECTION	protein_coding	AACS	chromosome:C_jacchus3.2.1:9:1:124281992:1	116034154	116116143	D	acetoacetyl-CoA synthetase [Source:HGNC Symbol;Acc:HGNC:21298]
ENSCJAG00000005897	KNOWN_BY_PROJECTION	protein_coding	TRIM45	chromosome:C_jacchus3.2.1:7:1:155834243:1	153246366	153255180	R	tripartite motif containing 45 [Source:HGNC Symbol;Acc:HGNC:19018]
ENSCJAG00000019679	KNOWN	protein_coding	ARMCX2	chromosome:C_jacchus3.2.1:X:1:142054208:1	90862941	90867490	R	Armadillo repeat-containing X-linked protein 2 {ECO:0000313|EMBL:JAB06022.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036547}  [Source:UniProtKB/TrEMBL;Acc:F7G0V8]
ENSCJAG00000008520	NOVEL	protein_coding	ENSCJAG00000008520	chromosome:C_jacchus3.2.1:5:1:159171411:1	111059323	111063337	D	Ribosomal protein L19 {ECO:0000256|RuleBase:RU000574}  [Source:UniProtKB/TrEMBL;Acc:F7EZL4]
ENSCJAG00000018904	KNOWN_BY_PROJECTION	protein_coding	ZNF879	chromosome:C_jacchus3.2.1:2:1:204313951:1	60947657	60961805	D	zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
ENSCJAG00000002728	KNOWN_BY_PROJECTION	protein_coding	CACNA1F	chromosome:C_jacchus3.2.1:X:1:142054208:1	47846758	47877754	R	calcium channel, voltage-dependent, L type, alpha 1F subunit [Source:HGNC Symbol;Acc:HGNC:1393]
ENSCJAG00000008410	KNOWN_BY_PROJECTION	protein_coding	STAC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	111071719	111087118	R	SH3 and cysteine rich domain 2 [Source:HGNC Symbol;Acc:HGNC:23990]
ENSCJAG00000005789	KNOWN_BY_PROJECTION	protein_coding	DOCK6	chromosome:C_jacchus3.2.1:22:1:49145316:1	10636661	10692784	R	dedicator of cytokinesis 6 [Source:HGNC Symbol;Acc:HGNC:19189]
ENSCJAG00000010457	KNOWN_BY_PROJECTION	protein_coding	CHRNB4	chromosome:C_jacchus3.2.1:18:1:47448759:1	3340724	3358420	R	cholinergic receptor, nicotinic, beta 4 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1964]
ENSCJAG00000005878	KNOWN_BY_PROJECTION	protein_coding	VTCN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	153279106	153338998	R	V-set domain containing T cell activation inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:28873]
ENSCJAG00000008528	NOVEL	pseudogene	ENSCJAG00000008528	chromosome:C_jacchus3.2.1:5:1:159171411:1	111111867	111112746	D	<no descrition>
ENSCJAG00000021393	NOVEL	protein_coding	ENSCJAG00000021393	chromosome:C_jacchus3.2.1:9:1:124281992:1	116141251	116142450	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039811}  [Source:UniProtKB/TrEMBL;Acc:F7GG74]
ENSCJAG00000006992	KNOWN_BY_PROJECTION	protein_coding	SFTA3	chromosome:C_jacchus3.2.1:10:1:132174527:1	61033697	61075480	R	surfactant associated 3 [Source:HGNC Symbol;Acc:HGNC:18387]
ENSCJAG00000013637	KNOWN_BY_PROJECTION	protein_coding	EPC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	29067282	29178717	R	enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
ENSCJAG00000005192	KNOWN_BY_PROJECTION	protein_coding	CALY	chromosome:C_jacchus3.2.1:12:1:121768101:1	121471816	121476383	R	calcyon neuron-specific vesicular protein [Source:HGNC Symbol;Acc:HGNC:17938]
ENSCJAG00000006994	KNOWN_BY_PROJECTION	protein_coding	NKX2-1	chromosome:C_jacchus3.2.1:10:1:132174527:1	61078105	61082483	R	NK2 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11825]
ENSCJAG00000008532	KNOWN	protein_coding	FBXL20	chromosome:C_jacchus3.2.1:5:1:159171411:1	111128053	111239789	R	F-box/LRR-repeat protein 20 isoform 1 {ECO:0000313|EMBL:JAB17724.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049638}  [Source:UniProtKB/TrEMBL;Acc:F6ZWN4]
ENSCJAG00000004381	KNOWN_BY_PROJECTION	protein_coding	TMEM132B	chromosome:C_jacchus3.2.1:9:1:124281992:1	116328539	116662614	D	transmembrane protein 132B [Source:HGNC Symbol;Acc:HGNC:29397]
ENSCJAG00000005205	KNOWN_BY_PROJECTION	protein_coding	PRAP1	chromosome:C_jacchus3.2.1:12:1:121768101:1	121488817	121496036	D	proline-rich acidic protein 1 [Source:HGNC Symbol;Acc:HGNC:23304]
ENSCJAG00000005871	KNOWN	protein_coding	C19ORF80	chromosome:C_jacchus3.2.1:22:1:49145316:1	10675940	10680654	D	Hepatocellular carcinoma-associated protein TD26 {ECO:0000313|EMBL:JAB03675.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010782}  [Source:UniProtKB/TrEMBL;Acc:F7IAN8]
ENSCJAG00000013666	NOVEL	protein_coding	ENSCJAG00000013666	chromosome:C_jacchus3.2.1:7:1:155834243:1	29189126	29189541	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025139}  [Source:UniProtKB/TrEMBL;Acc:F6UCD3]
ENSCJAG00000035365	NOVEL	protein_coding	ENSCJAG00000035365	chromosome:C_jacchus3.2.1:1:1:210400635:1	194582251	194589173	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036496}  [Source:UniProtKB/TrEMBL;Acc:F7HDE9]
ENSCJAG00000004405	KNOWN_BY_PROJECTION	protein_coding	RILPL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	116701805	116717765	D	Rab interacting lysosomal protein-like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
ENSCJAG00000001083	KNOWN_BY_PROJECTION	protein_coding	RHOA	chromosome:C_jacchus3.2.1:4:1:171630274:1	90994266	90994815	R	ras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]
ENSCJAG00000004409	NOVEL	pseudogene	ENSCJAG00000004409	chromosome:C_jacchus3.2.1:9:1:124281992:1	117216288	117216717	D	<no descrition>
ENSCJAG00000004418	NOVEL	protein_coding	ENSCJAG00000004418	chromosome:C_jacchus3.2.1:9:1:124281992:1	117772004	117772353	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007998}  [Source:UniProtKB/TrEMBL;Acc:F6YRG4]
ENSCJAG00000010469	KNOWN_BY_PROJECTION	protein_coding	ATP5D	chromosome:C_jacchus3.2.1:18:1:47448759:1	3404133	3404852	D	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit [Source:HGNC Symbol;Acc:HGNC:837]
ENSCJAG00000033537	NOVEL	protein_coding	ENSCJAG00000033537	chromosome:C_jacchus3.2.1:9:1:124281992:1	118503159	118504778	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048006}  [Source:UniProtKB/TrEMBL;Acc:F7GNF4]
ENSCJAG00000010472	NOVEL	protein_coding	ENSCJAG00000010472	chromosome:C_jacchus3.2.1:18:1:47448759:1	3453132	3454413	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019336}  [Source:UniProtKB/TrEMBL;Acc:F6R9R9]
ENSCJAG00000005221	KNOWN_BY_PROJECTION	protein_coding	FUOM	chromosome:C_jacchus3.2.1:12:1:121768101:1	121498514	121501245	R	fucose mutarotase [Source:HGNC Symbol;Acc:HGNC:24733]
ENSCJAG00000020356	NOVEL	protein_coding	ENSCJAG00000020356	chromosome:C_jacchus3.2.1:18:1:47448759:1	3532218	3562214	D	<no descrition>
ENSCJAG00000001086	KNOWN	protein_coding	EPHA7	chromosome:C_jacchus3.2.1:4:1:171630274:1	92399562	92585417	R	Ephrin type-A receptor 7 {ECO:0000313|EMBL:JAB30152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001951}  [Source:UniProtKB/TrEMBL;Acc:F6XPG2]
ENSCJAG00000019686	NOVEL	protein_coding	ENSCJAG00000019686	chromosome:C_jacchus3.2.1:X:1:142054208:1	91059709	91070985	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036629}  [Source:UniProtKB/TrEMBL;Acc:F6U8Z2]
ENSCJAG00000032968	NOVEL	protein_coding	ENSCJAG00000032968	chromosome:C_jacchus3.2.1:18:1:47448759:1	3568603	3575460	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043227}  [Source:UniProtKB/TrEMBL;Acc:F7ICP8]
ENSCJAG00000003634	KNOWN_BY_PROJECTION	protein_coding	TMEM132C	chromosome:C_jacchus3.2.1:9:1:124281992:1	119355396	119665432	D	transmembrane protein 132C [Source:HGNC Symbol;Acc:HGNC:25436]
ENSCJAG00000032251	NOVEL	protein_coding	ENSCJAG00000032251	chromosome:C_jacchus3.2.1:18:1:47448759:1	3576311	3578312	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028501}  [Source:UniProtKB/TrEMBL;Acc:F7C4K0]
ENSCJAG00000022181	KNOWN	protein_coding	HIST2H2BF	chromosome:C_jacchus3.2.1:18:1:47448759:1	3760961	3856174	R	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7IDZ6]
ENSCJAG00000013667	KNOWN_BY_PROJECTION	protein_coding	CCDC7	chromosome:C_jacchus3.2.1:7:1:155834243:1	29270688	29391146	D	coiled-coil domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26533]
ENSCJAG00000005787	NOVEL	protein_coding	ENSCJAG00000005787	chromosome:C_jacchus3.2.1:22:1:49145316:1	10723623	10724678	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010618}  [Source:UniProtKB/TrEMBL;Acc:F7HZ37]
ENSCJAG00000003622	KNOWN_BY_PROJECTION	protein_coding	SLC15A4	chromosome:C_jacchus3.2.1:9:1:124281992:1	119694458	119780715	R	solute carrier family 15 (oligopeptide transporter), member 4 [Source:HGNC Symbol;Acc:HGNC:23090]
ENSCJAG00000005772	KNOWN_BY_PROJECTION	protein_coding	TSPAN16	chromosome:C_jacchus3.2.1:22:1:49145316:1	10738297	10762969	D	tetraspanin 16 [Source:HGNC Symbol;Acc:HGNC:30725]
ENSCJAG00000005784	NOVEL	protein_coding	ENSCJAG00000005784	chromosome:C_jacchus3.2.1:22:1:49145316:1	10744923	10747116	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010615}  [Source:UniProtKB/TrEMBL;Acc:F7HZ40]
ENSCJAG00000000771	NOVEL	protein_coding	ENSCJAG00000000771	chromosome:C_jacchus3.2.1:18:1:47448759:1	3760966	3770167	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045908}  [Source:UniProtKB/TrEMBL;Acc:F6TNZ4]
ENSCJAG00000005761	KNOWN	protein_coding	RAB3D	chromosome:C_jacchus3.2.1:22:1:49145316:1	10760110	10779099	R	Ras-related protein Rab-3D {ECO:0000313|EMBL:JAB08720.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010591}  [Source:UniProtKB/TrEMBL;Acc:F7I8G8]
ENSCJAG00000005753	KNOWN	protein_coding	TMEM205	chromosome:C_jacchus3.2.1:22:1:49145316:1	10781470	10784287	R	Transmembrane protein 205 {ECO:0000313|EMBL:JAB11687.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043259}  [Source:UniProtKB/TrEMBL;Acc:F7IAE6]
ENSCJAG00000005233	KNOWN	protein_coding	ECHS1	chromosome:C_jacchus3.2.1:12:1:121768101:1	121503295	121513035	R	Enoyl-CoA hydratase, mitochondrial {ECO:0000313|EMBL:JAB02878.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009574}  [Source:UniProtKB/TrEMBL;Acc:F7H7J1]
ENSCJAG00000018909	KNOWN_BY_PROJECTION	protein_coding	ZNF354C	chromosome:C_jacchus3.2.1:2:1:204313951:1	60972366	61002036	D	zinc finger protein 354C [Source:HGNC Symbol;Acc:HGNC:16736]
ENSCJAG00000005630	KNOWN_BY_PROJECTION	protein_coding	CCDC159	chromosome:C_jacchus3.2.1:22:1:49145316:1	10784509	10794366	D	coiled-coil domain containing 159 [Source:HGNC Symbol;Acc:HGNC:26996]
ENSCJAG00000011354	NOVEL	protein_coding	ENSCJAG00000011354	chromosome:C_jacchus3.2.1:1:1:210400635:1	194767186	194779714	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020889}  [Source:UniProtKB/TrEMBL;Acc:F7DH97]
ENSCJAG00000008593	KNOWN	protein_coding	MED1	chromosome:C_jacchus3.2.1:5:1:159171411:1	111243159	111271108	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049849}  [Source:UniProtKB/TrEMBL;Acc:F6YVN1]
ENSCJAG00000011359	KNOWN	protein_coding	YWHAH	chromosome:C_jacchus3.2.1:1:1:210400635:1	194778846	194792840	D	14-3-3 protein eta {ECO:0000313|EMBL:JAB21034.1}; Tyrosine 3/tryptophan 5-monooxygenase activation protein, eta polypeptide (Predicted) {ECO:0000313|EMBL:ABZ10464.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020900}  [Source:UniProtKB/TrEMBL;Acc:B0KWS1]
ENSCJAG00000004921	NOVEL	protein_coding	ENSCJAG00000004921	chromosome:C_jacchus3.2.1:12:1:121768101:1	121537513	121567537	D	Mitochondrial GTPase 1 {ECO:0000256|PIRNR:PIRNR006230}  [Source:UniProtKB/TrEMBL;Acc:F7IDE7]
ENSCJAG00000011368	NOVEL	pseudogene	ENSCJAG00000011368	chromosome:C_jacchus3.2.1:1:1:210400635:1	194861326	194861792	R	<no descrition>
ENSCJAG00000005722	KNOWN	protein_coding	LPPR2	chromosome:C_jacchus3.2.1:22:1:49145316:1	10795074	10806070	D	Lipid phosphate phosphatase-related protein type 2 isoform 1 {ECO:0000313|EMBL:JAB19235.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010545}  [Source:UniProtKB/TrEMBL;Acc:F7IFL6]
ENSCJAG00000018919	KNOWN_BY_PROJECTION	protein_coding	ADAMTS2	chromosome:C_jacchus3.2.1:2:1:204313951:1	61028918	61250674	R	ADAM metallopeptidase with thrombospondin type 1 motif, 2 [Source:HGNC Symbol;Acc:HGNC:218]
ENSCJAG00000000778	KNOWN	protein_coding	BOLA1	chromosome:C_jacchus3.2.1:18:1:47448759:1	3866504	3867703	D	BolA-like protein 1 {ECO:0000313|EMBL:JAB08369.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001320}  [Source:UniProtKB/TrEMBL;Acc:F7CF23]
ENSCJAG00000000779	KNOWN	protein_coding	SV2A	chromosome:C_jacchus3.2.1:18:1:47448759:1	3870030	3880431	R	Synaptic vesicle glycoprotein 2A {ECO:0000313|EMBL:JAB20679.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001346}  [Source:UniProtKB/TrEMBL;Acc:F7C0F3]
ENSCJAG00000016464	KNOWN_BY_PROJECTION	protein_coding	NKX2-8	chromosome:C_jacchus3.2.1:10:1:132174527:1	61156330	61158845	R	NK2 homeobox 8 [Source:HGNC Symbol;Acc:HGNC:16364]
ENSCJAG00000016460	KNOWN	protein_coding	PAX9	chromosome:C_jacchus3.2.1:10:1:132174527:1	61240468	61260787	D	Paired box protein Pax-9  [Source:UniProtKB/Swiss-Prot;Acc:Q2VL58]
ENSCJAG00000011369	KNOWN	protein_coding	SLC5A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	194880231	194957663	D	Sodium/glucose cotransporter 1 isoform 1 {ECO:0000313|EMBL:JAB09239.1}; Solute carrier family 5, member 1 (Predicted) {ECO:0000313|EMBL:ABZ10466.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020942}  [Source:UniProtKB/TrEMBL;Acc:B0KWS3]
ENSCJAG00000005860	KNOWN	protein_coding	MAN1A2	chromosome:C_jacchus3.2.1:7:1:155834243:1	153485593	153657608	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010777}  [Source:UniProtKB/TrEMBL;Acc:F7IAS2]
ENSCJAG00000016449	KNOWN_BY_PROJECTION	protein_coding	SLC25A21	chromosome:C_jacchus3.2.1:10:1:132174527:1	61263516	61474270	R	solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 [Source:HGNC Symbol;Acc:HGNC:14411]
ENSCJAG00000005721	KNOWN_BY_PROJECTION	protein_coding	SWSAP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	10812597	10813791	D	SWIM-type zinc finger 7 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:26638]
ENSCJAG00000034174	NOVEL	protein_coding	ENSCJAG00000034174	chromosome:C_jacchus3.2.1:2:1:204313951:1	61530738	61531117	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012076}  [Source:UniProtKB/TrEMBL;Acc:F7GNG3]
ENSCJAG00000005704	KNOWN_BY_PROJECTION	protein_coding	EPOR	chromosome:C_jacchus3.2.1:22:1:49145316:1	10816583	10824896	R	erythropoietin receptor [Source:HGNC Symbol;Acc:HGNC:3416]
ENSCJAG00000035272	NOVEL	protein_coding	ENSCJAG00000035272	chromosome:C_jacchus3.2.1:X:1:142054208:1	91112242	91114925	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048325}  [Source:UniProtKB/TrEMBL;Acc:F7GT41]
ENSCJAG00000002771	KNOWN	protein_coding	CCDC22	chromosome:C_jacchus3.2.1:X:1:142054208:1	47879139	47897726	D	Coiled-coil domain-containing protein 22 {ECO:0000313|EMBL:JAB07204.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005091}  [Source:UniProtKB/TrEMBL;Acc:F7HLZ1]
ENSCJAG00000006495	NOVEL	protein_coding	ENSCJAG00000006495	chromosome:C_jacchus3.2.1:2:1:204313951:1	61536437	61546665	R	<no descrition>
ENSCJAG00000008635	KNOWN	protein_coding	CDK12	chromosome:C_jacchus3.2.1:5:1:159171411:1	111311271	111387667	D	Cyclin-dependent kinase 12 isoform 1 {ECO:0000313|EMBL:JAB10668.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015986}  [Source:UniProtKB/TrEMBL;Acc:F7HJN7]
ENSCJAG00000016434	KNOWN_BY_PROJECTION	protein_coding	MIPOL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	61801495	62191608	D	mirror-image polydactyly 1 [Source:HGNC Symbol;Acc:HGNC:21460]
ENSCJAG00000019717	KNOWN_BY_PROJECTION	protein_coding	TCP11X2	chromosome:C_jacchus3.2.1:X:1:142054208:1	91146875	91152149	R	t-complex 11 family, X-linked 2 [Source:HGNC Symbol;Acc:HGNC:48335]
ENSCJAG00000035465	KNOWN_BY_PROJECTION	protein_coding	CCDC7	chromosome:C_jacchus3.2.1:7:1:155834243:1	29515642	29700778	D	coiled-coil domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26533]
ENSCJAG00000019720	KNOWN	protein_coding	BEX5	chromosome:C_jacchus3.2.1:X:1:142054208:1	91162582	91164845	D	Protein BEX5 {ECO:0000313|EMBL:JAB02855.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042559}  [Source:UniProtKB/TrEMBL;Acc:F6V5P7]
ENSCJAG00000019721	KNOWN_BY_PROJECTION	protein_coding	TCEAL6	chromosome:C_jacchus3.2.1:X:1:142054208:1	91176798	91179258	D	transcription elongation factor A (SII)-like 6 [Source:HGNC Symbol;Acc:HGNC:24553]
ENSCJAG00000005858	NOVEL	pseudogene	ENSCJAG00000005858	chromosome:C_jacchus3.2.1:7:1:155834243:1	153711316	153711786	D	<no descrition>
ENSCJAG00000004904	NOVEL	protein_coding	ENSCJAG00000004904	chromosome:C_jacchus3.2.1:12:1:121768101:1	121612299	121637919	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008967}  [Source:UniProtKB/TrEMBL;Acc:F7I5L9]
ENSCJAG00000019723	KNOWN_BY_PROJECTION	protein_coding	TCEAL2	chromosome:C_jacchus3.2.1:X:1:142054208:1	91191474	91193509	R	transcription elongation factor A (SII)-like 2 [Source:HGNC Symbol;Acc:HGNC:29818]
ENSCJAG00000005856	KNOWN	protein_coding	FAM46C	chromosome:C_jacchus3.2.1:7:1:155834243:1	153757465	153777668	D	Protein FAM46C {ECO:0000313|EMBL:JAB11072.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010733}  [Source:UniProtKB/TrEMBL;Acc:F7IHS2]
ENSCJAG00000005851	NOVEL	pseudogene	ENSCJAG00000005851	chromosome:C_jacchus3.2.1:7:1:155834243:1	153794440	153795272	R	<no descrition>
ENSCJAG00000000793	KNOWN	protein_coding	SF3B4	chromosome:C_jacchus3.2.1:18:1:47448759:1	3887767	3894462	R	Splicing factor 3B subunit 4 {ECO:0000313|EMBL:JAB02877.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044519}  [Source:UniProtKB/TrEMBL;Acc:F7GK55]
ENSCJAG00000031250	KNOWN_BY_PROJECTION	protein_coding	ECSIT	chromosome:C_jacchus3.2.1:22:1:49145316:1	10833318	10971211	R	ECSIT signalling integrator [Source:HGNC Symbol;Acc:HGNC:29548]
ENSCJAG00000019724	KNOWN_BY_PROJECTION	protein_coding	ZMAT1	chromosome:C_jacchus3.2.1:X:1:142054208:1	91257609	91417217	D	zinc finger, matrin-type 1 [Source:HGNC Symbol;Acc:HGNC:29377]
ENSCJAG00000003602	KNOWN_BY_PROJECTION	protein_coding	GLT1D1	chromosome:C_jacchus3.2.1:9:1:124281992:1	119830874	119937970	D	glycosyltransferase 1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26483]
ENSCJAG00000013701	KNOWN	protein_coding	ITGB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	29752426	29802302	R	Integrin beta {ECO:0000256|RuleBase:RU000633}  [Source:UniProtKB/TrEMBL;Acc:F6W202]
ENSCJAG00000008704	KNOWN	protein_coding	NEUROD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	111455692	111462428	R	Neurogenic differentiation factor {ECO:0000256|PIRNR:PIRNR015618}  [Source:UniProtKB/TrEMBL;Acc:F7HEH2]
ENSCJAG00000033501	NOVEL	protein_coding	ENSCJAG00000033501	chromosome:C_jacchus3.2.1:5:1:159171411:1	111475201	111475561	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050482}  [Source:UniProtKB/TrEMBL;Acc:F7H3H9]
ENSCJAG00000004874	KNOWN_BY_PROJECTION	protein_coding	CYP2E1	chromosome:C_jacchus3.2.1:12:1:121768101:1	121685486	121694569	D	cytochrome P450, family 2, subfamily E, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2631]
ENSCJAG00000005808	KNOWN	protein_coding	GDAP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	154045368	154119641	R	Ganglioside-induced differentiation-associated protein 2 isoform b {ECO:0000313|EMBL:JAB27263.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044947}  [Source:UniProtKB/TrEMBL;Acc:F7GIJ4]
ENSCJAG00000008712	KNOWN	protein_coding	PPP1R1B	chromosome:C_jacchus3.2.1:5:1:159171411:1	111480340	111491085	D	Protein phosphatase 1 regulatory subunit 1B {ECO:0000313|EMBL:ABG00261.1}; Protein phosphatase 1 regulatory subunit 1B isoform 1 {ECO:0000313|EMBL:JAB09628.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009548}  [Source:UniProtKB/TrEMBL;Acc:A5X4B2]
ENSCJAG00000016408	KNOWN_BY_PROJECTION	protein_coding	TTC6	chromosome:C_jacchus3.2.1:10:1:132174527:1	62248502	62482607	D	tetratricopeptide repeat domain 6 [Source:HGNC Symbol;Acc:HGNC:19739]
ENSCJAG00000033879	NOVEL	protein_coding	ENSCJAG00000033879	chromosome:C_jacchus3.2.1:9:1:124281992:1	119972813	119981343	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048508}  [Source:UniProtKB/TrEMBL;Acc:F7GDF7]
ENSCJAG00000003046	KNOWN	protein_coding	TMSB15B	chromosome:C_jacchus3.2.1:X:1:142054208:1	91432511	91435511	R	Thymosin beta-15B {ECO:0000313|EMBL:JAB24578.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005523}  [Source:UniProtKB/TrEMBL;Acc:F7ILT2]
ENSCJAG00000003601	KNOWN_BY_PROJECTION	protein_coding	TMEM132D	chromosome:C_jacchus3.2.1:9:1:124281992:1	120024112	120308703	R	transmembrane protein 132D [Source:HGNC Symbol;Acc:HGNC:29411]
ENSCJAG00000009652	NOVEL	protein_coding	ENSCJAG00000009652	chromosome:C_jacchus3.2.1:X:1:142054208:1	91483149	91495065	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017737}  [Source:UniProtKB/TrEMBL;Acc:F7IC37]
ENSCJAG00000009644	KNOWN_BY_PROJECTION	protein_coding	ARMCX5	chromosome:C_jacchus3.2.1:X:1:142054208:1	91537259	91542267	D	armadillo repeat containing, X-linked 5 [Source:HGNC Symbol;Acc:HGNC:25772]
ENSCJAG00000032172	NOVEL	protein_coding	ENSCJAG00000032172	chromosome:C_jacchus3.2.1:2:1:204313951:1	61596952	61597885	D	<no descrition>
ENSCJAG00000005647	KNOWN_BY_PROJECTION	protein_coding	RGL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	10833559	10856921	R	ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
ENSCJAG00000003479	KNOWN_BY_PROJECTION	protein_coding	GPRASP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	91588208	91593827	D	G protein-coupled receptor associated sorting protein 2 [Source:HGNC Symbol;Acc:HGNC:25169]
ENSCJAG00000000802	KNOWN_BY_PROJECTION	protein_coding	MTMR11	chromosome:C_jacchus3.2.1:18:1:47448759:1	3895131	3903239	R	myotubularin related protein 11 [Source:HGNC Symbol;Acc:HGNC:24307]
ENSCJAG00000010879	KNOWN_BY_PROJECTION	protein_coding	PIWIL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	121371807	121408521	D	piwi-like RNA-mediated gene silencing 1 [Source:HGNC Symbol;Acc:HGNC:9007]
ENSCJAG00000036624	NOVEL	protein_coding	ENSCJAG00000036624	chromosome:C_jacchus3.2.1:4:1:171630274:1	92720733	92721708	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052130}  [Source:UniProtKB/TrEMBL;Acc:F7I0F4]
ENSCJAG00000032088	NOVEL	protein_coding	ENSCJAG00000032088	chromosome:C_jacchus3.2.1:4:1:171630274:1	92724440	92738849	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047004}  [Source:UniProtKB/TrEMBL;Acc:F7IG02]
ENSCJAG00000033573	NOVEL	protein_coding	ENSCJAG00000033573	chromosome:C_jacchus3.2.1:4:1:171630274:1	92846662	92847247	R	Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}  [Source:UniProtKB/TrEMBL;Acc:F7BDT1]
ENSCJAG00000006553	KNOWN	protein_coding	FAM193B	chromosome:C_jacchus3.2.1:2:1:204313951:1	61628134	61646963	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045924}  [Source:UniProtKB/TrEMBL;Acc:F6TC61]
ENSCJAG00000031661	NOVEL	protein_coding	ENSCJAG00000031661	chromosome:C_jacchus3.2.1:4:1:171630274:1	93091856	93094374	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046205}  [Source:UniProtKB/TrEMBL;Acc:F7C9K7]
ENSCJAG00000001142	KNOWN_BY_PROJECTION	protein_coding	MANEA	chromosome:C_jacchus3.2.1:4:1:171630274:1	94724821	94754466	D	mannosidase, endo-alpha [Source:HGNC Symbol;Acc:HGNC:21072]
ENSCJAG00000003473	NOVEL	pseudogene	ENSCJAG00000003473	chromosome:C_jacchus3.2.1:X:1:142054208:1	91629083	91630757	D	<no descrition>
ENSCJAG00000003467	NOVEL	protein_coding	ENSCJAG00000003467	chromosome:C_jacchus3.2.1:X:1:142054208:1	91847723	91849333	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006298}  [Source:UniProtKB/TrEMBL;Acc:F7G8Y7]
ENSCJAG00000006128	KNOWN	protein_coding	C1H22ORF28	chromosome:C_jacchus3.2.1:1:1:210400635:1	194968765	194996718	R	tRNA-splicing ligase RtcB homolog {ECO:0000256|HAMAP-Rule:MF_03144}  [Source:UniProtKB/TrEMBL;Acc:F7I1S7]
ENSCJAG00000003435	KNOWN_BY_PROJECTION	protein_coding	NXF3	chromosome:C_jacchus3.2.1:X:1:142054208:1	91856470	91867141	R	nuclear RNA export factor 3 [Source:HGNC Symbol;Acc:HGNC:8073]
ENSCJAG00000002813	KNOWN	protein_coding	FOXP3	chromosome:C_jacchus3.2.1:X:1:142054208:1	47898060	47912844	R	Callithrix jacchus forkhead box P3 (FOXP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001267740]
ENSCJAG00000005617	KNOWN	protein_coding	CCDC151	chromosome:C_jacchus3.2.1:22:1:49145316:1	10858235	10868460	R	Coiled-coil domain-containing protein 151 {ECO:0000313|EMBL:JAB14518.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052023}  [Source:UniProtKB/TrEMBL;Acc:F7IJB7]
ENSCJAG00000008731	KNOWN_BY_PROJECTION	protein_coding	STARD3	chromosome:C_jacchus3.2.1:5:1:159171411:1	111491915	111516338	D	StAR-related lipid transfer (START) domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17579]
ENSCJAG00000016398	NOVEL	protein_coding	ENSCJAG00000016398	chromosome:C_jacchus3.2.1:10:1:132174527:1	62866832	62868886	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030183}  [Source:UniProtKB/TrEMBL;Acc:F6V844]
ENSCJAG00000005749	KNOWN	protein_coding	WDR3	chromosome:C_jacchus3.2.1:7:1:155834243:1	154119709	154524689	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010659}  [Source:UniProtKB/TrEMBL;Acc:F7HWL5]
ENSCJAG00000016394	KNOWN	protein_coding	CLEC14A	chromosome:C_jacchus3.2.1:10:1:132174527:1	62912037	62913512	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030157}  [Source:UniProtKB/TrEMBL;Acc:F6VSL7]
ENSCJAG00000004839	KNOWN_BY_PROJECTION	protein_coding	SYCE1	chromosome:C_jacchus3.2.1:12:1:121768101:1	121709490	121720857	R	synaptonemal complex central element protein 1 [Source:HGNC Symbol;Acc:HGNC:28852]
ENSCJAG00000035047	NOVEL	protein_coding	ENSCJAG00000035047	chromosome:C_jacchus3.2.1:4:1:171630274:1	95121933	95122716	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046295}  [Source:UniProtKB/TrEMBL;Acc:F7ASE2]
ENSCJAG00000001168	KNOWN	protein_coding	FUT9	chromosome:C_jacchus3.2.1:4:1:171630274:1	95147551	95335959	D	Alpha-(1,3)-fucosyltransferase {ECO:0000313|EMBL:JAB23789.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002015}  [Source:UniProtKB/TrEMBL;Acc:F7I511]
ENSCJAG00000016392	NOVEL	protein_coding	ENSCJAG00000016392	chromosome:C_jacchus3.2.1:10:1:132174527:1	63683743	63684203	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030152}  [Source:UniProtKB/TrEMBL;Acc:F6VSN3]
ENSCJAG00000008819	KNOWN_BY_PROJECTION	protein_coding	TCAP	chromosome:C_jacchus3.2.1:5:1:159171411:1	111517011	111520025	D	titin-cap [Source:HGNC Symbol;Acc:HGNC:11610]
ENSCJAG00000004833	NOVEL	protein_coding	ENSCJAG00000004833	chromosome:C_jacchus3.2.1:12:1:121768101:1	121737406	121739561	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008817}  [Source:UniProtKB/TrEMBL;Acc:F7IHK1]
ENSCJAG00000000821	KNOWN_BY_PROJECTION	protein_coding	OTUD7B	chromosome:C_jacchus3.2.1:18:1:47448759:1	3910468	3972626	R	OTU deubiquitinase 7B [Source:HGNC Symbol;Acc:HGNC:16683]
ENSCJAG00000001179	KNOWN	protein_coding	UFL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	95615413	95668423	D	E3 UFM1-protein ligase 1 {ECO:0000313|EMBL:JAB06515.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002101}  [Source:UniProtKB/TrEMBL;Acc:F7ILA7]
ENSCJAG00000002866	KNOWN_BY_PROJECTION	protein_coding	PPP1R3F	chromosome:C_jacchus3.2.1:X:1:142054208:1	47917171	47935050	D	protein phosphatase 1, regulatory subunit 3F [Source:HGNC Symbol;Acc:HGNC:14944]
ENSCJAG00000010919	KNOWN_BY_PROJECTION	protein_coding	RIMBP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	121431560	121522014	R	RIMS binding protein 2 [Source:HGNC Symbol;Acc:HGNC:30339]
ENSCJAG00000003413	KNOWN	protein_coding	BEX4	chromosome:C_jacchus3.2.1:X:1:142054208:1	91956464	92109756	D	Protein BEX4 {ECO:0000313|EMBL:JAB10290.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006200}  [Source:UniProtKB/TrEMBL;Acc:F7H6P0]
ENSCJAG00000008824	KNOWN_BY_PROJECTION	protein_coding	PNMT	chromosome:C_jacchus3.2.1:5:1:159171411:1	111522175	111525044	D	phenylethanolamine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:9160]
ENSCJAG00000002885	NOVEL	protein_coding	ENSCJAG00000002885	chromosome:C_jacchus3.2.1:X:1:142054208:1	47949517	47951180	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005237}  [Source:UniProtKB/TrEMBL;Acc:F7I0W8]
ENSCJAG00000003427	KNOWN_BY_PROJECTION	protein_coding	TCEAL5	chromosome:C_jacchus3.2.1:X:1:142054208:1	92030051	92033185	R	transcription elongation factor A (SII)-like 5 [Source:HGNC Symbol;Acc:HGNC:22282]
ENSCJAG00000003425	NOVEL	protein_coding	ENSCJAG00000003425	chromosome:C_jacchus3.2.1:X:1:142054208:1	92064936	92066614	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006223}  [Source:UniProtKB/TrEMBL;Acc:F7H6H7]
ENSCJAG00000003421	KNOWN_BY_PROJECTION	protein_coding	TCEAL7	chromosome:C_jacchus3.2.1:X:1:142054208:1	92089033	92091120	D	transcription elongation factor A (SII)-like 7 [Source:HGNC Symbol;Acc:HGNC:28336]
ENSCJAG00000003418	KNOWN	protein_coding	WBP5	chromosome:C_jacchus3.2.1:X:1:142054208:1	92112530	92114506	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006210}; WW domain-binding protein 5 {ECO:0000313|EMBL:JAB08083.1}  [Source:UniProtKB/TrEMBL;Acc:F7H6L2]
ENSCJAG00000005595	KNOWN_BY_PROJECTION	protein_coding	PRKCSH	chromosome:C_jacchus3.2.1:22:1:49145316:1	10869415	10885532	D	protein kinase C substrate 80K-H [Source:HGNC Symbol;Acc:HGNC:9411]
ENSCJAG00000008841	KNOWN	protein_coding	PGAP3	chromosome:C_jacchus3.2.1:5:1:159171411:1	111527083	111539012	R	Post-GPI attachment to proteins factor 3 {ECO:0000313|EMBL:JAB10377.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016232}  [Source:UniProtKB/TrEMBL;Acc:F6Y4P4]
ENSCJAG00000022881	KNOWN	protein_coding	RAB40A	chromosome:C_jacchus3.2.1:X:1:142054208:1	92244961	92264384	R	Ras-related protein Rab-40A-like {ECO:0000313|EMBL:JAB11556.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041452}  [Source:UniProtKB/TrEMBL;Acc:F7HAF2]
ENSCJAG00000002889	NOVEL	protein_coding	ENSCJAG00000002889	chromosome:C_jacchus3.2.1:X:1:142054208:1	47970163	48051622	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005307}  [Source:UniProtKB/TrEMBL;Acc:F7ILX0]
ENSCJAG00000003407	KNOWN	protein_coding	TCEAL4	chromosome:C_jacchus3.2.1:X:1:142054208:1	92316622	92328476	D	Transcription elongation factor A protein-like 4 {ECO:0000313|EMBL:JAB38821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045949}  [Source:UniProtKB/TrEMBL;Acc:F6SQZ5]
ENSCJAG00000005589	KNOWN_BY_PROJECTION	protein_coding	ELAVL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	10891259	10900624	R	ELAV like neuron-specific RNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:3314]
ENSCJAG00000005551	KNOWN	protein_coding	ZNF653	chromosome:C_jacchus3.2.1:22:1:49145316:1	10916646	10940570	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010157}; Zinc finger protein 653 {ECO:0000313|EMBL:JAB04650.1}  [Source:UniProtKB/TrEMBL;Acc:F6YAW9]
ENSCJAG00000013753	KNOWN	protein_coding	NRP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	29992632	30151038	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025368}  [Source:UniProtKB/TrEMBL;Acc:F6ZZA9]
ENSCJAG00000033262	NOVEL	protein_coding	ENSCJAG00000033262	chromosome:C_jacchus3.2.1:9:1:124281992:1	121744861	121745268	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042462}  [Source:UniProtKB/TrEMBL;Acc:F6ZPH0]
ENSCJAG00000020996	NOVEL	protein_coding	ENSCJAG00000020996	chromosome:C_jacchus3.2.1:9:1:124281992:1	121770645	121771159	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027452}  [Source:UniProtKB/TrEMBL;Acc:F7G5Q3]
ENSCJAG00000032035	NOVEL	protein_coding	ENSCJAG00000032035	chromosome:C_jacchus3.2.1:9:1:124281992:1	121773519	121823918	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050473}  [Source:UniProtKB/TrEMBL;Acc:F7H3M8]
ENSCJAG00000031336	NOVEL	protein_coding	ENSCJAG00000031336	chromosome:C_jacchus3.2.1:9:1:124281992:1	121821928	121822695	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048387}  [Source:UniProtKB/TrEMBL;Acc:F7G1U5]
ENSCJAG00000000845	KNOWN	protein_coding	VPS45	chromosome:C_jacchus3.2.1:18:1:47448759:1	4027867	4111527	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001471}; Vacuolar protein sorting-associated protein 45 {ECO:0000313|EMBL:JAB44154.1}  [Source:UniProtKB/TrEMBL;Acc:F6W1A0]
ENSCJAG00000012395	KNOWN_BY_PROJECTION	protein_coding	STX2	chromosome:C_jacchus3.2.1:9:1:124281992:1	121863023	121912281	R	syntaxin 2 [Source:HGNC Symbol;Acc:HGNC:3403]
ENSCJAG00000006595	KNOWN_BY_PROJECTION	protein_coding	DDX41	chromosome:C_jacchus3.2.1:2:1:204313951:1	61650129	61655324	D	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Source:HGNC Symbol;Acc:HGNC:18674]
ENSCJAG00000016324	KNOWN	protein_coding	SEC23A	chromosome:C_jacchus3.2.1:10:1:132174527:1	63689674	63753614	R	Protein transport protein Sec23A {ECO:0000313|EMBL:JAB06496.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030147}  [Source:UniProtKB/TrEMBL;Acc:F6VT25]
ENSCJAG00000003927	KNOWN	protein_coding	RAN	chromosome:C_jacchus3.2.1:9:1:124281992:1	121945355	121950983	D	GTP-binding nuclear protein Ran {ECO:0000313|EMBL:JAB04190.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007196}  [Source:UniProtKB/TrEMBL;Acc:F6QR16]
ENSCJAG00000006209	NOVEL	protein_coding	BPIL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	194998045	195048550	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011458}  [Source:UniProtKB/TrEMBL;Acc:F7ISH7]
ENSCJAG00000008874	KNOWN	protein_coding	ERBB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	111539041	111586214	D	Receptor tyrosine-protein kinase erbB-2 isoform a {ECO:0000313|EMBL:JAB15173.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016267}  [Source:UniProtKB/TrEMBL;Acc:F6WAF2]
ENSCJAG00000002911	NOVEL	pseudogene	ENSCJAG00000002911	chromosome:C_jacchus3.2.1:X:1:142054208:1	47974726	47975839	R	<no descrition>
ENSCJAG00000002926	KNOWN_BY_PROJECTION	protein_coding	PAGE1	chromosome:C_jacchus3.2.1:X:1:142054208:1	48126558	48133698	R	P antigen family, member 1 (prostate associated) [Source:HGNC Symbol;Acc:HGNC:4107]
ENSCJAG00000002935	KNOWN	protein_coding	PAGE4	chromosome:C_jacchus3.2.1:X:1:142054208:1	48298011	48302715	D	G antigen family C member 1 {ECO:0000313|EMBL:JAB01740.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005314}  [Source:UniProtKB/TrEMBL;Acc:F7ILW3]
ENSCJAG00000005481	NOVEL	protein_coding	ENSCJAG00000005481	chromosome:C_jacchus3.2.1:22:1:49145316:1	10972612	11199409	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010045}  [Source:UniProtKB/TrEMBL;Acc:F7BVD3]
ENSCJAG00000003405	KNOWN	protein_coding	TCEAL3	chromosome:C_jacchus3.2.1:X:1:142054208:1	92347168	92349746	D	Transcription elongation factor A protein-like 3 {ECO:0000313|EMBL:JAB02831.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006185}  [Source:UniProtKB/TrEMBL;Acc:F7D1V2]
ENSCJAG00000008895	KNOWN	protein_coding	MIEN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	111586759	111588179	R	Migration and invasion enhancer 1 {ECO:0000313|EMBL:JAB04341.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016278}  [Source:UniProtKB/TrEMBL;Acc:F6VQV9]
ENSCJAG00000002942	KNOWN_BY_PROJECTION	protein_coding	USP27X	chromosome:C_jacchus3.2.1:X:1:142054208:1	48352872	48354800	D	ubiquitin specific peptidase 27, X-linked [Source:HGNC Symbol;Acc:HGNC:13486]
ENSCJAG00000003401	KNOWN	protein_coding	TCEAL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	92369188	92371411	D	Transcription elongation factor A protein-like 1 {ECO:0000313|EMBL:JAB04431.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051145}  [Source:UniProtKB/TrEMBL;Acc:F6Z3W5]
ENSCJAG00000005530	KNOWN_BY_PROJECTION	protein_coding	CNN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	10981440	10992575	D	calponin 1, basic, smooth muscle [Source:HGNC Symbol;Acc:HGNC:2155]
ENSCJAG00000003394	KNOWN	protein_coding	MORF4L2	chromosome:C_jacchus3.2.1:X:1:142054208:1	92419148	92432570	R	Mortality factor 4-like protein 2 {ECO:0000313|EMBL:JAB39056.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050586}  [Source:UniProtKB/TrEMBL;Acc:F7DQL2]
ENSCJAG00000005523	KNOWN_BY_PROJECTION	protein_coding	ELOF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	10996256	10997554	R	elongation factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28691]
ENSCJAG00000002945	KNOWN_BY_PROJECTION	protein_coding	CLCN5	chromosome:C_jacchus3.2.1:X:1:142054208:1	48398918	48566118	D	chloride channel, voltage-sensitive 5 [Source:HGNC Symbol;Acc:HGNC:2023]
ENSCJAG00000003374	KNOWN_BY_PROJECTION	protein_coding	GLRA4	chromosome:C_jacchus3.2.1:X:1:142054208:1	92450785	92472912	R	glycine receptor, alpha 4 [Source:HGNC Symbol;Acc:HGNC:31715]
ENSCJAG00000005507	KNOWN	protein_coding	ACP5	chromosome:C_jacchus3.2.1:22:1:49145316:1	11015107	11020640	R	Tartrate-resistant acid phosphatase type 5 {ECO:0000313|EMBL:JAB09307.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051253}  [Source:UniProtKB/TrEMBL;Acc:F6VKK1]
ENSCJAG00000003393	KNOWN_BY_PROJECTION	protein_coding	TMEM31	chromosome:C_jacchus3.2.1:X:1:142054208:1	92456260	92458396	D	transmembrane protein 31 [Source:HGNC Symbol;Acc:HGNC:28601]
ENSCJAG00000003349	KNOWN	protein_coding	PLP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	92517822	92533969	D	Myelin proteolipid protein isoform 1 {ECO:0000313|EMBL:JAB19565.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006121}  [Source:UniProtKB/TrEMBL;Acc:F7F5H2]
ENSCJAG00000003983	KNOWN_BY_PROJECTION	protein_coding	GPR133	chromosome:C_jacchus3.2.1:9:1:124281992:1	122151964	122224239	D	G protein-coupled receptor 133 [Source:HGNC Symbol;Acc:HGNC:19893]
ENSCJAG00000001218	KNOWN_BY_PROJECTION	protein_coding	FHL5	chromosome:C_jacchus3.2.1:4:1:171630274:1	95682724	95746589	D	four and a half LIM domains 5 [Source:HGNC Symbol;Acc:HGNC:17371]
ENSCJAG00000008900	KNOWN_BY_PROJECTION	protein_coding	GRB7	chromosome:C_jacchus3.2.1:5:1:159171411:1	111595948	111606262	D	growth factor receptor-bound protein 7 [Source:HGNC Symbol;Acc:HGNC:4567]
ENSCJAG00000034169	NOVEL	protein_coding	ENSCJAG00000034169	chromosome:C_jacchus3.2.1:9:1:124281992:1	122521412	122551502	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046880}  [Source:UniProtKB/TrEMBL;Acc:F7IK15]
ENSCJAG00000032752	NOVEL	protein_coding	ENSCJAG00000032752	chromosome:C_jacchus3.2.1:9:1:124281992:1	122745881	122748933	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046350}  [Source:UniProtKB/TrEMBL;Acc:F6WZ60]
ENSCJAG00000001231	KNOWN	protein_coding	GPR63	chromosome:C_jacchus3.2.1:4:1:171630274:1	95910063	95944565	R	Putative G-protein coupled receptor 63 {ECO:0000313|EMBL:JAB03720.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002150}  [Source:UniProtKB/TrEMBL;Acc:F7IGP9]
ENSCJAG00000017254	KNOWN	protein_coding	MKS1	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	461616	467951	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031766}  [Source:UniProtKB/TrEMBL;Acc:H9KX96]
ENSCJAG00000000846	NOVEL	pseudogene	ENSCJAG00000000846	chromosome:C_jacchus3.2.1:22:1:49145316:1	11027363	11028218	R	<no descrition>
ENSCJAG00000038005	KNOWN_BY_PROJECTION	protein_coding	ZNF627	chromosome:C_jacchus3.2.1:22:1:49145316:1	11051012	11054002	D	zinc finger protein 627 [Source:HGNC Symbol;Acc:HGNC:30570]
ENSCJAG00000003345	NOVEL	pseudogene	ENSCJAG00000003345	chromosome:C_jacchus3.2.1:X:1:142054208:1	92593671	92594927	D	<no descrition>
ENSCJAG00000001235	KNOWN	protein_coding	ENSCJAG00000001235	chromosome:C_jacchus3.2.1:4:1:171630274:1	96002586	96009247	R	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 {ECO:0000313|EMBL:JAB01900.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002158}  [Source:UniProtKB/TrEMBL;Acc:F7IGP2]
ENSCJAG00000001239	KNOWN_BY_PROJECTION	protein_coding	KLHL32	chromosome:C_jacchus3.2.1:4:1:171630274:1	96037355	96245635	D	kelch-like family member 32 [Source:HGNC Symbol;Acc:HGNC:21221]
ENSCJAG00000003613	KNOWN	protein_coding	SFSWAP	chromosome:C_jacchus3.2.1:9:1:124281992:1	122764869	122860585	D	Splicing factor, suppressor of white-apricot homolog isoform 2 {ECO:0000313|EMBL:JAB11451.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006617}  [Source:UniProtKB/TrEMBL;Acc:F7HBA0]
ENSCJAG00000036715	NOVEL	protein_coding	ENSCJAG00000036715	chromosome:C_jacchus3.2.1:22:1:49145316:1	11087664	11092320	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009858}  [Source:UniProtKB/TrEMBL;Acc:F7F6R3]
ENSCJAG00000000867	KNOWN_BY_PROJECTION	protein_coding	PLEKHO1	chromosome:C_jacchus3.2.1:18:1:47448759:1	4115837	4127083	D	pleckstrin homology domain containing, family O member 1 [Source:HGNC Symbol;Acc:HGNC:24310]
ENSCJAG00000005418	NOVEL	protein_coding	ENSCJAG00000005418	chromosome:C_jacchus3.2.1:22:1:49145316:1	11113179	11741946	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009911}  [Source:UniProtKB/TrEMBL;Acc:F7HHH5]
ENSCJAG00000005692	KNOWN_BY_PROJECTION	protein_coding	SPAG17	chromosome:C_jacchus3.2.1:7:1:155834243:1	154144682	154384212	R	sperm associated antigen 17 [Source:HGNC Symbol;Acc:HGNC:26620]
ENSCJAG00000018938	NOVEL	protein_coding	ENSCJAG00000018938	scaffold:C_jacchus3.2.1:GL286411.1:1:12485:1	5006	6982	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035163}  [Source:UniProtKB/TrEMBL;Acc:H9KXH0]
ENSCJAG00000003006	KNOWN_BY_PROJECTION	protein_coding	AKAP4	chromosome:C_jacchus3.2.1:X:1:142054208:1	48651467	48661491	R	A kinase (PRKA) anchor protein 4 [Source:HGNC Symbol;Acc:HGNC:374]
ENSCJAG00000009710	NOVEL	protein_coding	ENSCJAG00000009710	chromosome:C_jacchus3.2.1:18:1:47448759:1	4184437	4212096	R	<no descrition>
ENSCJAG00000003720	KNOWN	protein_coding	PUS1	chromosome:C_jacchus3.2.1:9:1:124281992:1	122862038	123011931	D	tRNA pseudouridine synthase {ECO:0000256|RuleBase:RU003792}  [Source:UniProtKB/TrEMBL;Acc:F7EPT1]
ENSCJAG00000016248	KNOWN_BY_PROJECTION	protein_coding	GEMIN2	chromosome:C_jacchus3.2.1:10:1:132174527:1	63767121	63883522	D	gem (nuclear organelle) associated protein 2 [Source:HGNC Symbol;Acc:HGNC:10884]
ENSCJAG00000003432	KNOWN	protein_coding	ENSCJAG00000003432	chromosome:C_jacchus3.2.1:X:1:142054208:1	92654472	92658121	D	Thymosin beta-15B {ECO:0000313|EMBL:JAB04874.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006232}  [Source:UniProtKB/TrEMBL;Acc:F7H1H0]
ENSCJAG00000035241	NOVEL	protein_coding	ENSCJAG00000035241	chromosome:C_jacchus3.2.1:X:1:142054208:1	92669533	92958311	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007405}  [Source:UniProtKB/TrEMBL;Acc:F6PRJ1]
ENSCJAG00000033818	NOVEL	protein_coding	ENSCJAG00000033818	chromosome:C_jacchus3.2.1:X:1:142054208:1	92669584	92670462	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007410}  [Source:UniProtKB/TrEMBL;Acc:F6PRC4]
ENSCJAG00000003016	KNOWN_BY_PROJECTION	protein_coding	DGKK	chromosome:C_jacchus3.2.1:X:1:142054208:1	48733793	48786111	R	diacylglycerol kinase, kappa [Source:HGNC Symbol;Acc:HGNC:32395]
ENSCJAG00000009756	KNOWN	protein_coding	CA14	chromosome:C_jacchus3.2.1:18:1:47448759:1	4233666	4241163	D	Carbonic anhydrase 14 {ECO:0000313|EMBL:JAB07301.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017933}  [Source:UniProtKB/TrEMBL;Acc:F7IC13]
ENSCJAG00000008241	KNOWN	protein_coding	FAM199X	chromosome:C_jacchus3.2.1:X:1:142054208:1	92703150	92909023	D	Protein FAM199X {ECO:0000313|EMBL:JAB04542.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015229}  [Source:UniProtKB/TrEMBL;Acc:F7GPT7]
ENSCJAG00000001254	KNOWN_BY_PROJECTION	protein_coding	MMS22L	chromosome:C_jacchus3.2.1:4:1:171630274:1	96252645	96384618	R	MMS22-like, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:21475]
ENSCJAG00000004084	NOVEL	protein_coding	ENSCJAG00000004084	chromosome:C_jacchus3.2.1:X:1:142054208:1	92750588	92751334	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007421}  [Source:UniProtKB/TrEMBL;Acc:F6PHT5]
ENSCJAG00000008252	NOVEL	pseudogene	ENSCJAG00000008252	chromosome:C_jacchus3.2.1:X:1:142054208:1	92819904	92821111	D	<no descrition>
ENSCJAG00000008237	KNOWN_BY_PROJECTION	protein_coding	ESX1	chromosome:C_jacchus3.2.1:X:1:142054208:1	92961478	92965949	R	ESX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:14865]
ENSCJAG00000008219	KNOWN_BY_PROJECTION	protein_coding	TEX13A	chromosome:C_jacchus3.2.1:X:1:142054208:1	93926981	93928479	R	testis expressed 13A [Source:HGNC Symbol;Acc:HGNC:11735]
ENSCJAG00000005453	KNOWN_BY_PROJECTION	protein_coding	ZNF788	chromosome:C_jacchus3.2.1:22:1:49145316:1	11288038	11298375	D	zinc finger family member 788 [Source:HGNC Symbol;Acc:HGNC:33112]
ENSCJAG00000033096	NOVEL	pseudogene	ENSCJAG00000033096	chromosome:C_jacchus3.2.1:4:1:171630274:1	96294809	96295129	D	<no descrition>
ENSCJAG00000008213	KNOWN_BY_PROJECTION	protein_coding	IL1RAPL2	chromosome:C_jacchus3.2.1:X:1:142054208:1	94213686	94503498	D	interleukin 1 receptor accessory protein-like 2 [Source:HGNC Symbol;Acc:HGNC:5997]
ENSCJAG00000001286	KNOWN_BY_PROJECTION	protein_coding	POU3F2	chromosome:C_jacchus3.2.1:4:1:171630274:1	97996152	97998289	D	POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
ENSCJAG00000003654	KNOWN_BY_PROJECTION	protein_coding	MMP17	chromosome:C_jacchus3.2.1:9:1:124281992:1	122886366	122913646	D	matrix metallopeptidase 17 (membrane-inserted) [Source:HGNC Symbol;Acc:HGNC:7163]
ENSCJAG00000013814	KNOWN_BY_PROJECTION	protein_coding	PARD3	chromosome:C_jacchus3.2.1:7:1:155834243:1	30899955	31494410	R	par-3 family cell polarity regulator [Source:HGNC Symbol;Acc:HGNC:16051]
ENSCJAG00000001288	KNOWN	protein_coding	FBXL4	chromosome:C_jacchus3.2.1:4:1:171630274:1	98035273	98103554	R	F-box/LRR-repeat protein 4 {ECO:0000313|EMBL:JAB08318.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050714}  [Source:UniProtKB/TrEMBL;Acc:F7EHS3]
ENSCJAG00000008300	KNOWN_BY_PROJECTION	protein_coding	SHROOM4	chromosome:C_jacchus3.2.1:X:1:142054208:1	48943242	48990061	R	shroom family member 4 [Source:HGNC Symbol;Acc:HGNC:29215]
ENSCJAG00000008313	KNOWN_BY_PROJECTION	protein_coding	BMP15	chromosome:C_jacchus3.2.1:X:1:142054208:1	49256239	49262553	D	bone morphogenetic protein 15 [Source:HGNC Symbol;Acc:HGNC:1068]
ENSCJAG00000008160	KNOWN_BY_PROJECTION	protein_coding	NRK	chromosome:C_jacchus3.2.1:X:1:142054208:1	94549517	94683774	D	Nik related kinase [Source:HGNC Symbol;Acc:HGNC:25391]
ENSCJAG00000005445	KNOWN_BY_PROJECTION	protein_coding	ZNF136	chromosome:C_jacchus3.2.1:22:1:49145316:1	11344575	11372395	D	zinc finger protein 136 [Source:HGNC Symbol;Acc:HGNC:12920]
ENSCJAG00000005417	NOVEL	pseudogene	ENSCJAG00000005417	chromosome:C_jacchus3.2.1:22:1:49145316:1	11691260	11691756	D	<no descrition>
ENSCJAG00000005408	KNOWN_BY_PROJECTION	protein_coding	ZNF490	chromosome:C_jacchus3.2.1:22:1:49145316:1	11762410	11799215	R	zinc finger protein 490 [Source:HGNC Symbol;Acc:HGNC:23705]
ENSCJAG00000005379	KNOWN_BY_PROJECTION	protein_coding	ZNF791	chromosome:C_jacchus3.2.1:22:1:49145316:1	11799454	11818324	D	zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
ENSCJAG00000003693	KNOWN_BY_PROJECTION	protein_coding	ULK1	chromosome:C_jacchus3.2.1:9:1:124281992:1	122955778	122983901	D	unc-51 like autophagy activating kinase 1 [Source:HGNC Symbol;Acc:HGNC:12558]
ENSCJAG00000016314	KNOWN	protein_coding	TRAPPC6B	chromosome:C_jacchus3.2.1:10:1:132174527:1	63815627	63838023	R	Trafficking protein particle complex subunit 6B isoform 1 {ECO:0000313|EMBL:JAB02608.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030037}  [Source:UniProtKB/TrEMBL;Acc:F6RUG6]
ENSCJAG00000005683	NOVEL	protein_coding	ENSCJAG00000005683	chromosome:C_jacchus3.2.1:7:1:155834243:1	154931481	154932876	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052178}  [Source:UniProtKB/TrEMBL;Acc:F7HXZ9]
ENSCJAG00000015936	NOVEL	protein_coding	ENSCJAG00000015936	chromosome:C_jacchus3.2.1:X:1:142054208:1	49613192	49614838	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029341}  [Source:UniProtKB/TrEMBL;Acc:F7IA59]
ENSCJAG00000006649	KNOWN_BY_PROJECTION	protein_coding	DOK3	chromosome:C_jacchus3.2.1:2:1:204313951:1	61657008	61663121	D	docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
ENSCJAG00000015933	KNOWN_BY_PROJECTION	protein_coding	CXorf67	chromosome:C_jacchus3.2.1:X:1:142054208:1	49696035	49698435	D	chromosome X open reading frame 67 [Source:HGNC Symbol;Acc:HGNC:33738]
ENSCJAG00000032979	NOVEL	protein_coding	ENSCJAG00000032979	chromosome:C_jacchus3.2.1:22:1:49145316:1	11832322	11832698	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043339}  [Source:UniProtKB/TrEMBL;Acc:F7HM05]
ENSCJAG00000015930	KNOWN	protein_coding	ENSCJAG00000015930	chromosome:C_jacchus3.2.1:X:1:142054208:1	49794508	49800657	R	Diphosphoinositol polyphosphate phosphohydrolase 3-beta {ECO:0000313|EMBL:JAB01853.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029320}  [Source:UniProtKB/TrEMBL;Acc:F7IEU2]
ENSCJAG00000000368	KNOWN_BY_PROJECTION	protein_coding	GSPT2	chromosome:C_jacchus3.2.1:X:1:142054208:1	49802835	50002898	D	G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]
ENSCJAG00000005662	KNOWN	protein_coding	TBX15	chromosome:C_jacchus3.2.1:7:1:155834243:1	155107891	155224427	R	T-box transcription factor TBX15 {ECO:0000313|EMBL:JAB41509.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010411}  [Source:UniProtKB/TrEMBL;Acc:F7HZ49]
ENSCJAG00000023178	NOVEL	pseudogene	ENSCJAG00000023178	chromosome:C_jacchus3.2.1:X:1:142054208:1	49979864	49981069	R	<no descrition>
ENSCJAG00000000372	NOVEL	protein_coding	ENSCJAG00000000372	chromosome:C_jacchus3.2.1:X:1:142054208:1	49983071	49983870	D	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F6QLK2]
ENSCJAG00000022274	NOVEL	protein_coding	ENSCJAG00000022274	chromosome:C_jacchus3.2.1:X:1:142054208:1	50039432	50039745	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040921}  [Source:UniProtKB/TrEMBL;Acc:F7HZS1]
ENSCJAG00000008957	KNOWN_BY_PROJECTION	protein_coding	IKZF3	chromosome:C_jacchus3.2.1:5:1:159171411:1	111623206	111715310	R	IKAROS family zinc finger 3 (Aiolos) [Source:HGNC Symbol;Acc:HGNC:13178]
ENSCJAG00000008150	KNOWN_BY_PROJECTION	protein_coding	MUM1L1	chromosome:C_jacchus3.2.1:X:1:142054208:1	94875978	94878203	D	melanoma associated antigen (mutated) 1-like 1 [Source:HGNC Symbol;Acc:HGNC:26583]
ENSCJAG00000005297	NOVEL	protein_coding	ENSCJAG00000005297	chromosome:C_jacchus3.2.1:22:1:49145316:1	11835414	11855895	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009824}  [Source:UniProtKB/TrEMBL;Acc:F7FJR2]
ENSCJAG00000017462	KNOWN	protein_coding	MAGED1	chromosome:C_jacchus3.2.1:X:1:142054208:1	50095817	50193732	D	Melanoma-associated antigen D1 isoform b {ECO:0000313|EMBL:JAB10711.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032278}  [Source:UniProtKB/TrEMBL;Acc:F7DKC0]
ENSCJAG00000008118	KNOWN	protein_coding	CXORF57	chromosome:C_jacchus3.2.1:X:1:142054208:1	95277797	95337726	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015038}; Uncharacterized protein CXorf57 isoform 1 {ECO:0000313|EMBL:JAB19082.1}  [Source:UniProtKB/TrEMBL;Acc:F7G779]
ENSCJAG00000009786	KNOWN	protein_coding	APH1A	chromosome:C_jacchus3.2.1:18:1:47448759:1	4241481	4245306	R	Gamma-secretase subunit APH-1A isoform 2 {ECO:0000313|EMBL:JAB30210.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051453}  [Source:UniProtKB/TrEMBL;Acc:F7B1K5]
ENSCJAG00000016291	KNOWN	protein_coding	PNN	chromosome:C_jacchus3.2.1:10:1:132174527:1	63847302	63855448	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030015}  [Source:UniProtKB/TrEMBL;Acc:F6S4U1]
ENSCJAG00000001311	KNOWN	protein_coding	FAXC	chromosome:C_jacchus3.2.1:4:1:171630274:1	98461662	98531113	R	Failed axon connections homolog {ECO:0000313|EMBL:JAB21794.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002318}  [Source:UniProtKB/TrEMBL;Acc:F7IL59]
ENSCJAG00000006238	KNOWN_BY_PROJECTION	protein_coding	FBXO7	chromosome:C_jacchus3.2.1:1:1:210400635:1	195061233	195085640	D	F-box protein 7 [Source:HGNC Symbol;Acc:HGNC:13586]
ENSCJAG00000006678	KNOWN	protein_coding	PDLIM7	chromosome:C_jacchus3.2.1:2:1:204313951:1	61669080	61684386	D	PDZ and LIM domain protein 7 isoform 4 {ECO:0000313|EMBL:JAB08635.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012363}  [Source:UniProtKB/TrEMBL;Acc:F7H8H7]
ENSCJAG00000003733	KNOWN_BY_PROJECTION	protein_coding	EP400	chromosome:C_jacchus3.2.1:9:1:124281992:1	123021701	123154414	D	E1A binding protein p400 [Source:HGNC Symbol;Acc:HGNC:11958]
ENSCJAG00000016247	NOVEL	protein_coding	ENSCJAG00000016247	chromosome:C_jacchus3.2.1:10:1:132174527:1	63883684	63884849	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029902}  [Source:UniProtKB/TrEMBL;Acc:F7IEB8]
ENSCJAG00000001326	KNOWN	protein_coding	COQ3	chromosome:C_jacchus3.2.1:4:1:171630274:1	98550543	98575970	R	Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial {ECO:0000313|EMBL:JAB01868.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002332}  [Source:UniProtKB/TrEMBL;Acc:F7IIX4]
ENSCJAG00000005285	KNOWN	protein_coding	WDR83OS	chromosome:C_jacchus3.2.1:22:1:49145316:1	11859401	11862195	R	Protein Asterix {ECO:0000313|EMBL:JAB10883.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009679}  [Source:UniProtKB/TrEMBL;Acc:F7EUK6]
ENSCJAG00000000331	NOVEL	protein_coding	ENSCJAG00000000331	chromosome:C_jacchus3.2.1:X:1:142054208:1	50323405	50324700	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000549}  [Source:UniProtKB/TrEMBL;Acc:F7H2Z1]
ENSCJAG00000006266	KNOWN	protein_coding	SYN3	chromosome:C_jacchus3.2.1:1:1:210400635:1	195093610	195555016	R	Synapsin III isoform IIIa (Predicted) {ECO:0000313|EMBL:ABZ10473.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048037}  [Source:UniProtKB/TrEMBL;Acc:B0KWT3]
ENSCJAG00000008099	KNOWN	protein_coding	RNF128	chromosome:C_jacchus3.2.1:X:1:142054208:1	95352661	95447413	D	E3 ubiquitin-protein ligase RNF128 isoform 2 {ECO:0000313|EMBL:JAB11789.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032067}  [Source:UniProtKB/TrEMBL;Acc:F7HCE5]
ENSCJAG00000000290	NOVEL	protein_coding	ENSCJAG00000000290	chromosome:C_jacchus3.2.1:X:1:142054208:1	50331936	50339478	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000544}  [Source:UniProtKB/TrEMBL;Acc:F7H305]
ENSCJAG00000006278	KNOWN	protein_coding	TIMP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	195356831	195414447	D	Metalloproteinase inhibitor 3 {ECO:0000313|EMBL:JAB11112.1}; Tissue inhibitor of metalloproteinase 3 (Predicted) {ECO:0000313|EMBL:ABZ10472.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011582}  [Source:UniProtKB/TrEMBL;Acc:B0KWT4]
ENSCJAG00000008049	KNOWN_BY_PROJECTION	protein_coding	TBC1D8B	chromosome:C_jacchus3.2.1:X:1:142054208:1	95452987	95518450	D	TBC1 domain family, member 8B (with GRAM domain) [Source:HGNC Symbol;Acc:HGNC:24715]
ENSCJAG00000000984	NOVEL	pseudogene	ENSCJAG00000000984	chromosome:C_jacchus3.2.1:1:1:210400635:1	195666875	195667509	R	<no descrition>
ENSCJAG00000005653	KNOWN	protein_coding	WARS2	chromosome:C_jacchus3.2.1:7:1:155834243:1	155210320	155394884	R	Tryptophan--tRNA ligase, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB23372.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047931}  [Source:UniProtKB/TrEMBL;Acc:F7EFP4]
ENSCJAG00000000968	KNOWN	protein_coding	LARGE	chromosome:C_jacchus3.2.1:1:1:210400635:1	195708256	196366177	R	Glycosyltransferase-like protein LARGE1 {ECO:0000313|EMBL:JAB04893.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001677}  [Source:UniProtKB/TrEMBL;Acc:F7BY32]
ENSCJAG00000005419	KNOWN_BY_PROJECTION	protein_coding	DDX51	chromosome:C_jacchus3.2.1:9:1:124281992:1	123205552	123215834	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Source:HGNC Symbol;Acc:HGNC:20082]
ENSCJAG00000008035	KNOWN_BY_PROJECTION	protein_coding	RIPPLY1	chromosome:C_jacchus3.2.1:X:1:142054208:1	95547892	95551033	R	ripply transcriptional repressor 1 [Source:HGNC Symbol;Acc:HGNC:25117]
ENSCJAG00000005405	KNOWN_BY_PROJECTION	protein_coding	NOC4L	chromosome:C_jacchus3.2.1:9:1:124281992:1	123214994	123220571	D	nucleolar complex associated 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28461]
ENSCJAG00000017441	NOVEL	protein_coding	ENSCJAG00000017441	chromosome:C_jacchus3.2.1:5:1:159171411:1	111685888	111838705	R	<no descrition>
ENSCJAG00000005623	KNOWN_BY_PROJECTION	protein_coding	HAO2	chromosome:C_jacchus3.2.1:7:1:155834243:1	155628584	155664007	D	hydroxyacid oxidase 2 (long chain) [Source:HGNC Symbol;Acc:HGNC:4810]
ENSCJAG00000022754	NOVEL	pseudogene	ENSCJAG00000022754	chromosome:C_jacchus3.2.1:1:1:210400635:1	197203480	197204177	R	<no descrition>
ENSCJAG00000010494	KNOWN_BY_PROJECTION	protein_coding	GALNT9	chromosome:C_jacchus3.2.1:9:1:124281992:1	123272071	123399336	R	polypeptide N-acetylgalactosaminyltransferase 9 [Source:HGNC Symbol;Acc:HGNC:4131]
ENSCJAG00000033042	NOVEL	protein_coding	ENSCJAG00000033042	chromosome:C_jacchus3.2.1:1:1:210400635:1	197515637	197516705	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043917}  [Source:UniProtKB/TrEMBL;Acc:F7HVV4]
ENSCJAG00000008242	KNOWN_BY_PROJECTION	protein_coding	ISX	chromosome:C_jacchus3.2.1:1:1:210400635:1	197548462	197568673	D	intestine-specific homeobox [Source:HGNC Symbol;Acc:HGNC:28084]
ENSCJAG00000021520	KNOWN_BY_PROJECTION	protein_coding	FBRSL1	chromosome:C_jacchus3.2.1:9:1:124281992:1	123490422	123581018	R	fibrosin-like 1 [Source:HGNC Symbol;Acc:HGNC:29308]
ENSCJAG00000008030	KNOWN_BY_PROJECTION	protein_coding	CLDN2	chromosome:C_jacchus3.2.1:X:1:142054208:1	95567785	95580223	D	claudin 2 [Source:HGNC Symbol;Acc:HGNC:2041]
ENSCJAG00000012817	KNOWN_BY_PROJECTION	protein_coding	P2RX2	chromosome:C_jacchus3.2.1:9:1:124281992:1	123670229	123675599	D	purinergic receptor P2X, ligand gated ion channel, 2 [Source:HGNC Symbol;Acc:HGNC:15459]
ENSCJAG00000000537	KNOWN	protein_coding	HMGXB4	chromosome:C_jacchus3.2.1:1:1:210400635:1	197727803	197760047	D	HMG domain-containing protein 4 {ECO:0000313|EMBL:JAB07276.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000929}  [Source:UniProtKB/TrEMBL;Acc:F6SBN8]
ENSCJAG00000007983	KNOWN_BY_PROJECTION	protein_coding	MORC4	chromosome:C_jacchus3.2.1:X:1:142054208:1	95591365	95642308	R	MORC family CW-type zinc finger 4 [Source:HGNC Symbol;Acc:HGNC:23485]
ENSCJAG00000001349	KNOWN_BY_PROJECTION	protein_coding	XAGE2B	chromosome:C_jacchus3.2.1:X:1:142054208:1	50470327	50642611	R	X antigen family, member 2B [Source:HGNC Symbol;Acc:HGNC:30680]
ENSCJAG00000005620	NOVEL	protein_coding	ENSCJAG00000005620	chromosome:C_jacchus3.2.1:7:1:155834243:1	155684109	155724107	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044960}  [Source:UniProtKB/TrEMBL;Acc:F7FVS1]
ENSCJAG00000012853	KNOWN_BY_PROJECTION	protein_coding	POLE	chromosome:C_jacchus3.2.1:9:1:124281992:1	123677948	123738919	R	polymerase (DNA directed), epsilon, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9177]
ENSCJAG00000009890	KNOWN_BY_PROJECTION	protein_coding	C1orf54	chromosome:C_jacchus3.2.1:18:1:47448759:1	4249887	4258867	D	chromosome 1 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:26258]
ENSCJAG00000007957	KNOWN_BY_PROJECTION	protein_coding	RBM41	chromosome:C_jacchus3.2.1:X:1:142054208:1	95709006	95759955	R	RNA binding motif protein 41 [Source:HGNC Symbol;Acc:HGNC:25617]
ENSCJAG00000009905	KNOWN_BY_PROJECTION	protein_coding	CIART	chromosome:C_jacchus3.2.1:18:1:47448759:1	4260821	4265034	D	circadian associated repressor of transcription [Source:HGNC Symbol;Acc:HGNC:25200]
ENSCJAG00000007942	KNOWN_BY_PROJECTION	protein_coding	NUP62CL	chromosome:C_jacchus3.2.1:X:1:142054208:1	95785380	95805293	R	nucleoporin 62kDa C-terminal like [Source:HGNC Symbol;Acc:HGNC:25960]
ENSCJAG00000014005	KNOWN_BY_PROJECTION	protein_coding	CUL2	chromosome:C_jacchus3.2.1:7:1:155834243:1	31832318	31918875	R	cullin 2 [Source:HGNC Symbol;Acc:HGNC:2552]
ENSCJAG00000009915	KNOWN	protein_coding	MRPS21	chromosome:C_jacchus3.2.1:18:1:47448759:1	4272393	4289072	D	28S ribosomal protein S21, mitochondrial {ECO:0000313|EMBL:JAB01700.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018197}  [Source:UniProtKB/TrEMBL;Acc:F7HBX1]
ENSCJAG00000007925	KNOWN	protein_coding	PIH1D3	chromosome:C_jacchus3.2.1:X:1:142054208:1	95835861	95880407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014678}  [Source:UniProtKB/TrEMBL;Acc:F7HV33]
ENSCJAG00000007922	NOVEL	pseudogene	ENSCJAG00000007922	chromosome:C_jacchus3.2.1:X:1:142054208:1	95903132	95904200	D	<no descrition>
ENSCJAG00000033656	NOVEL	pseudogene	ENSCJAG00000033656	chromosome:C_jacchus3.2.1:2:1:204313951:1	61686216	61686974	R	<no descrition>
ENSCJAG00000007907	NOVEL	protein_coding	ENSCJAG00000007907	chromosome:C_jacchus3.2.1:X:1:142054208:1	95986449	95987450	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014643}  [Source:UniProtKB/TrEMBL;Acc:F7I232]
ENSCJAG00000032145	NOVEL	pseudogene	ENSCJAG00000032145	chromosome:C_jacchus3.2.1:X:1:142054208:1	96061875	96062612	D	<no descrition>
ENSCJAG00000013192	NOVEL	protein_coding	ENSCJAG00000013192	chromosome:C_jacchus3.2.1:X:1:142054208:1	50509263	50511930	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024219}  [Source:UniProtKB/TrEMBL;Acc:F7GN22]
ENSCJAG00000009926	KNOWN	protein_coding	PRPF3	chromosome:C_jacchus3.2.1:18:1:47448759:1	4300347	4335574	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018470}  [Source:UniProtKB/TrEMBL;Acc:F7G8R9]
ENSCJAG00000013173	NOVEL	protein_coding	ENSCJAG00000013173	chromosome:C_jacchus3.2.1:X:1:142054208:1	50587817	50605629	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024199}  [Source:UniProtKB/TrEMBL;Acc:F7H8U4]
ENSCJAG00000006729	KNOWN_BY_PROJECTION	protein_coding	DBN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	61695386	61714221	D	drebrin 1 [Source:HGNC Symbol;Acc:HGNC:2695]
ENSCJAG00000013184	NOVEL	protein_coding	ENSCJAG00000013184	chromosome:C_jacchus3.2.1:X:1:142054208:1	50624031	50626131	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024212}  [Source:UniProtKB/TrEMBL;Acc:F7GN34]
ENSCJAG00000005828	NOVEL	protein_coding	ENSCJAG00000005828	chromosome:C_jacchus3.2.1:X:1:142054208:1	50675997	50758778	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049521}  [Source:UniProtKB/TrEMBL;Acc:F6WJQ3]
ENSCJAG00000005830	KNOWN	protein_coding	GPR173	chromosome:C_jacchus3.2.1:X:1:142054208:1	50822361	50856471	D	Putative G-protein coupled receptor 173 {ECO:0000313|EMBL:JAB14252.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010717}  [Source:UniProtKB/TrEMBL;Acc:F7IHV8]
ENSCJAG00000007898	KNOWN_BY_PROJECTION	protein_coding	FRMPD3	chromosome:C_jacchus3.2.1:X:1:142054208:1	96197147	96218734	D	FERM and PDZ domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29382]
ENSCJAG00000007891	NOVEL	protein_coding	ENSCJAG00000007891	chromosome:C_jacchus3.2.1:X:1:142054208:1	96243642	96262808	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014609}  [Source:UniProtKB/TrEMBL;Acc:F7I4I3]
ENSCJAG00000005850	KNOWN_BY_PROJECTION	protein_coding	TSPYL2	chromosome:C_jacchus3.2.1:X:1:142054208:1	50860867	50867358	D	TSPY-like 2 [Source:HGNC Symbol;Acc:HGNC:24358]
ENSCJAG00000007864	KNOWN	protein_coding	TSC22D3	chromosome:C_jacchus3.2.1:X:1:142054208:1	96336084	96403450	R	TSC22 domain family protein 3 isoform 2 {ECO:0000313|EMBL:JAB07829.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050475}  [Source:UniProtKB/TrEMBL;Acc:F7H3M4]
ENSCJAG00000000519	KNOWN_BY_PROJECTION	protein_coding	TOM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	197766164	197821431	D	target of myb1 (chicken) [Source:HGNC Symbol;Acc:HGNC:11982]
ENSCJAG00000016105	KNOWN	protein_coding	ENSCJAG00000016105	chromosome:C_jacchus3.2.1:10:1:132174527:1	63900679	64021899	D	Cutaneous T-cell lymphoma-associated antigen 5 isoform 1 {ECO:0000313|EMBL:JAB11504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047102}  [Source:UniProtKB/TrEMBL;Acc:F7HZH7]
ENSCJAG00000007802	KNOWN	protein_coding	MID2	chromosome:C_jacchus3.2.1:X:1:142054208:1	96467696	96563378	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014553}  [Source:UniProtKB/TrEMBL;Acc:F7IGE6]
ENSCJAG00000006424	KNOWN	protein_coding	RPRD2	chromosome:C_jacchus3.2.1:18:1:47448759:1	4343837	4457554	D	Regulation of nuclear pre-mRNA domain-containing protein 2 {ECO:0000313|EMBL:JAB04006.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050899}  [Source:UniProtKB/TrEMBL;Acc:F7EVV0]
ENSCJAG00000005618	NOVEL	pseudogene	ENSCJAG00000005618	chromosome:C_jacchus3.2.1:7:1:155834243:1	155711950	155712516	R	<no descrition>
ENSCJAG00000022909	KNOWN	protein_coding	ZNF697	chromosome:C_jacchus3.2.1:7:1:155834243:1	155746893	155750464	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041470}; Zinc finger protein 697 {ECO:0000313|EMBL:JAB28663.1}  [Source:UniProtKB/TrEMBL;Acc:F7H571]
ENSCJAG00000005870	KNOWN_BY_PROJECTION	protein_coding	KDM5C	chromosome:C_jacchus3.2.1:X:1:142054208:1	50994513	51028313	R	lysine (K)-specific demethylase 5C [Source:HGNC Symbol;Acc:HGNC:11114]
ENSCJAG00000008982	KNOWN	protein_coding	ORMDL3	chromosome:C_jacchus3.2.1:5:1:159171411:1	111744341	111751113	R	ORM1-like protein 3 {ECO:0000313|EMBL:JAB08476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050133}  [Source:UniProtKB/TrEMBL;Acc:F7H4F1]
ENSCJAG00000021843	NOVEL	pseudogene	ENSCJAG00000021843	chromosome:C_jacchus3.2.1:7:1:155834243:1	31879263	31879469	D	<no descrition>
ENSCJAG00000006764	KNOWN	protein_coding	PRR7	chromosome:C_jacchus3.2.1:2:1:204313951:1	61714529	61724392	R	Proline-rich protein 7 {ECO:0000313|EMBL:JAB15325.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012520}  [Source:UniProtKB/TrEMBL;Acc:F7H2Y9]
ENSCJAG00000014066	KNOWN	protein_coding	CREM	chromosome:C_jacchus3.2.1:7:1:155834243:1	31957328	32045111	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050409}; cAMP-responsive element modulator isoform 8 {ECO:0000313|EMBL:JAB21492.1}  [Source:UniProtKB/TrEMBL;Acc:F7DR28]
ENSCJAG00000007781	KNOWN_BY_PROJECTION	protein_coding	VSIG1	chromosome:C_jacchus3.2.1:X:1:142054208:1	96679377	96720871	D	V-set and immunoglobulin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28675]
ENSCJAG00000000535	NOVEL	protein_coding	ENSCJAG00000000535	chromosome:C_jacchus3.2.1:1:1:210400635:1	197784659	197788565	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000913}  [Source:UniProtKB/TrEMBL;Acc:F6SC17]
ENSCJAG00000006429	KNOWN_BY_PROJECTION	protein_coding	TARS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	4466968	4485529	D	threonyl-tRNA synthetase 2, mitochondrial (putative) [Source:HGNC Symbol;Acc:HGNC:30740]
ENSCJAG00000023026	KNOWN_BY_PROJECTION	protein_coding	PXMP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	123739270	123754005	D	peroxisomal membrane protein 2, 22kDa [Source:HGNC Symbol;Acc:HGNC:9716]
ENSCJAG00000000516	KNOWN	protein_coding	HMOX1	chromosome:C_jacchus3.2.1:1:1:210400635:1	197845368	197857197	D	Heme oxygenase 1 {ECO:0000313|EMBL:JAB02017.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000882}  [Source:UniProtKB/TrEMBL;Acc:F6U6L9]
ENSCJAG00000012964	KNOWN_BY_PROJECTION	protein_coding	PGAM5	chromosome:C_jacchus3.2.1:9:1:124281992:1	123766863	123784967	D	phosphoglycerate mutase family member 5 [Source:HGNC Symbol;Acc:HGNC:28763]
ENSCJAG00000012978	KNOWN	protein_coding	ANKLE2	chromosome:C_jacchus3.2.1:9:1:124281992:1	123790616	123826904	R	Ankyrin repeat and LEM domain-containing protein 2 {ECO:0000313|EMBL:JAB47033.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023841}  [Source:UniProtKB/TrEMBL;Acc:F7HCZ4]
ENSCJAG00000006775	KNOWN	protein_coding	GRK6	chromosome:C_jacchus3.2.1:2:1:204313951:1	61728640	61745616	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012636}  [Source:UniProtKB/TrEMBL;Acc:F6QAF7]
ENSCJAG00000013000	KNOWN_BY_PROJECTION	protein_coding	GOLGA3	chromosome:C_jacchus3.2.1:9:1:124281992:1	123840674	123897437	R	golgin A3 [Source:HGNC Symbol;Acc:HGNC:4426]
ENSCJAG00000034725	KNOWN_BY_PROJECTION	protein_coding	LRRC3C	chromosome:C_jacchus3.2.1:5:1:159171411:1	111765669	111768976	D	leucine rich repeat containing 3C [Source:HGNC Symbol;Acc:HGNC:40034]
ENSCJAG00000031496	NOVEL	protein_coding	ENSCJAG00000031496	chromosome:C_jacchus3.2.1:5:1:159171411:1	111788029	111789067	D	<no descrition>
ENSCJAG00000017435	NOVEL	protein_coding	ENSCJAG00000017435	chromosome:C_jacchus3.2.1:5:1:159171411:1	111802878	111804157	D	<no descrition>
ENSCJAG00000017514	NOVEL	protein_coding	ENSCJAG00000017514	chromosome:C_jacchus3.2.1:5:1:159171411:1	111887244	111888731	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032247}  [Source:UniProtKB/TrEMBL;Acc:F7E1I8]
ENSCJAG00000014076	KNOWN_BY_PROJECTION	protein_coding	CCNY	chromosome:C_jacchus3.2.1:7:1:155834243:1	32132399	32345838	D	cyclin Y [Source:HGNC Symbol;Acc:HGNC:23354]
ENSCJAG00000013030	KNOWN_BY_PROJECTION	protein_coding	CHFR	chromosome:C_jacchus3.2.1:9:1:124281992:1	123910453	123942447	R	checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:20455]
ENSCJAG00000015973	KNOWN_BY_PROJECTION	protein_coding	NR1D1	chromosome:C_jacchus3.2.1:5:1:159171411:1	111908467	111917616	R	nuclear receptor subfamily 1, group D, member 1 [Source:HGNC Symbol;Acc:HGNC:7962]
ENSCJAG00000013064	NOVEL	protein_coding	ENSCJAG00000013064	chromosome:C_jacchus3.2.1:9:1:124281992:1	123979752	123980852	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023988}  [Source:UniProtKB/TrEMBL;Acc:F7EFE6]
ENSCJAG00000013074	KNOWN_BY_PROJECTION	protein_coding	ZNF605	chromosome:C_jacchus3.2.1:9:1:124281992:1	123983218	123990326	R	zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
ENSCJAG00000000511	NOVEL	protein_coding	ENSCJAG00000000511	chromosome:C_jacchus3.2.1:1:1:210400635:1	197862650	197890745	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000876}  [Source:UniProtKB/TrEMBL;Acc:F6U7M9]
ENSCJAG00000016012	KNOWN_BY_PROJECTION	protein_coding	MSL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	111941156	111957705	D	male-specific lethal 1 homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:27905]
ENSCJAG00000005948	KNOWN_BY_PROJECTION	protein_coding	IQSEC2	chromosome:C_jacchus3.2.1:X:1:142054208:1	51035511	51133191	R	IQ motif and Sec7 domain 2 [Source:HGNC Symbol;Acc:HGNC:29059]
ENSCJAG00000000509	KNOWN_BY_PROJECTION	protein_coding	RASD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	198000708	198013151	D	RASD family, member 2 [Source:HGNC Symbol;Acc:HGNC:18229]
ENSCJAG00000032691	NOVEL	protein_coding	ENSCJAG00000032691	chromosome:C_jacchus3.2.1:X:1:142054208:1	96724923	97091411	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014213}  [Source:UniProtKB/TrEMBL;Acc:F7HXN5]
ENSCJAG00000007717	NOVEL	protein_coding	ENSCJAG00000007717	chromosome:C_jacchus3.2.1:X:1:142054208:1	96726511	96733937	R	<no descrition>
ENSCJAG00000005272	KNOWN_BY_PROJECTION	protein_coding	WDR83	chromosome:C_jacchus3.2.1:22:1:49145316:1	11859823	11866555	D	WD repeat domain 83 [Source:HGNC Symbol;Acc:HGNC:32672]
ENSCJAG00000000506	KNOWN	protein_coding	MB	chromosome:C_jacchus3.2.1:1:1:210400635:1	198071913	198090811	R	Myoglobin {ECO:0000256|RuleBase:RU251113}  [Source:UniProtKB/TrEMBL;Acc:F6PMG4]
ENSCJAG00000013090	KNOWN	protein_coding	ZNF26	chromosome:C_jacchus3.2.1:9:1:124281992:1	124032589	124056871	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024021}; Zinc finger protein 26 isoform 2 {ECO:0000313|EMBL:JAB09251.1}  [Source:UniProtKB/TrEMBL;Acc:F7H3S0]
ENSCJAG00000000502	NOVEL	pseudogene	ENSCJAG00000000502	chromosome:C_jacchus3.2.1:1:1:210400635:1	198095397	198095615	R	<no descrition>
ENSCJAG00000006499	KNOWN_BY_PROJECTION	protein_coding	ECM1	chromosome:C_jacchus3.2.1:18:1:47448759:1	4486340	4492069	D	extracellular matrix protein 1 [Source:HGNC Symbol;Acc:HGNC:3153]
ENSCJAG00000019446	NOVEL	protein_coding	ENSCJAG00000019446	chromosome:C_jacchus3.2.1:1:1:210400635:1	198141429	198143640	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036106}  [Source:UniProtKB/TrEMBL;Acc:F7E682]
ENSCJAG00000013094	KNOWN	protein_coding	ZNF84	chromosome:C_jacchus3.2.1:9:1:124281992:1	124075772	124093943	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024053}; Zinc finger protein 84 {ECO:0000313|EMBL:JAB10203.1}  [Source:UniProtKB/TrEMBL;Acc:F7GND7]
ENSCJAG00000019449	KNOWN_BY_PROJECTION	protein_coding	APOL6	chromosome:C_jacchus3.2.1:1:1:210400635:1	198160764	198178152	D	apolipoprotein L, 6 [Source:HGNC Symbol;Acc:HGNC:14870]
ENSCJAG00000019452	NOVEL	pseudogene	ENSCJAG00000019452	chromosome:C_jacchus3.2.1:1:1:210400635:1	198194346	198195133	D	<no descrition>
ENSCJAG00000013104	KNOWN_BY_PROJECTION	protein_coding	ZNF140	chromosome:C_jacchus3.2.1:9:1:124281992:1	124126516	124149304	D	zinc finger protein 140 [Source:HGNC Symbol;Acc:HGNC:12925]
ENSCJAG00000007676	KNOWN_BY_PROJECTION	protein_coding	ATG4A	chromosome:C_jacchus3.2.1:X:1:142054208:1	96734022	96790618	D	autophagy related 4A, cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:16489]
ENSCJAG00000016032	KNOWN	protein_coding	CASC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	111974620	111990628	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029512}  [Source:UniProtKB/TrEMBL;Acc:F7IH43]
ENSCJAG00000005244	KNOWN	protein_coding	DHPS	chromosome:C_jacchus3.2.1:22:1:49145316:1	11866176	11872328	R	Deoxyhypusine synthase isoform a {ECO:0000313|EMBL:JAB04415.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009636}  [Source:UniProtKB/TrEMBL;Acc:F7FZK0]
ENSCJAG00000016046	NOVEL	protein_coding	ENSCJAG00000016046	chromosome:C_jacchus3.2.1:5:1:159171411:1	111987002	111989215	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029521}  [Source:UniProtKB/TrEMBL;Acc:F7IES7]
ENSCJAG00000005985	KNOWN	protein_coding	SMC1A	chromosome:C_jacchus3.2.1:X:1:142054208:1	51196300	51245390	R	Structural maintenance of chromosomes protein {ECO:0000256|PIRNR:PIRNR005719}  [Source:UniProtKB/TrEMBL;Acc:F7IDJ8]
ENSCJAG00000019456	KNOWN	protein_coding	RBFOX2	chromosome:C_jacchus3.2.1:1:1:210400635:1	198216929	198518836	R	RNA binding protein fox-1 homolog 2 isoform 6 {ECO:0000313|EMBL:JAB06397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036183}  [Source:UniProtKB/TrEMBL;Acc:F7H3L9]
ENSCJAG00000016049	KNOWN_BY_PROJECTION	protein_coding	RAPGEFL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	111995557	112013339	D	Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:HGNC Symbol;Acc:HGNC:17428]
ENSCJAG00000007564	KNOWN_BY_PROJECTION	protein_coding	COL4A6	chromosome:C_jacchus3.2.1:X:1:142054208:1	96791563	96860943	R	collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
ENSCJAG00000013421	KNOWN_BY_PROJECTION	protein_coding	CDC6	chromosome:C_jacchus3.2.1:5:1:159171411:1	112090656	112107716	D	cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]
ENSCJAG00000023027	KNOWN_BY_PROJECTION	protein_coding	ZNF891	chromosome:C_jacchus3.2.1:9:1:124281992:1	124161428	124163294	R	zinc finger protein 891 [Source:HGNC Symbol;Acc:HGNC:38709]
ENSCJAG00000034524	KNOWN_BY_PROJECTION	protein_coding	ZNF10	chromosome:C_jacchus3.2.1:9:1:124281992:1	124171252	124216754	D	zinc finger protein 10 [Source:HGNC Symbol;Acc:HGNC:12879]
ENSCJAG00000014112	KNOWN_BY_PROJECTION	protein_coding	GJD4	chromosome:C_jacchus3.2.1:7:1:155834243:1	32380979	32383980	D	gap junction protein, delta 4, 40.1kDa [Source:HGNC Symbol;Acc:HGNC:23296]
ENSCJAG00000014119	KNOWN_BY_PROJECTION	protein_coding	FZD8	chromosome:C_jacchus3.2.1:7:1:155834243:1	32412718	32417828	R	frizzled class receptor 8 [Source:HGNC Symbol;Acc:HGNC:4046]
ENSCJAG00000013112	KNOWN_BY_PROJECTION	protein_coding	ZNF268	chromosome:C_jacchus3.2.1:9:1:124281992:1	124234743	124265384	D	zinc finger protein 268 [Source:HGNC Symbol;Acc:HGNC:13061]
ENSCJAG00000006555	KNOWN_BY_PROJECTION	protein_coding	ADAMTSL4	chromosome:C_jacchus3.2.1:18:1:47448759:1	4527348	4537256	D	ADAMTS-like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
ENSCJAG00000005225	KNOWN	protein_coding	FBXW9	chromosome:C_jacchus3.2.1:22:1:49145316:1	11877760	11886208	R	F-box/WD repeat-containing protein 9 {ECO:0000313|EMBL:JAB04044.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009556}  [Source:UniProtKB/TrEMBL;Acc:F7HCX0]
ENSCJAG00000006834	KNOWN_BY_PROJECTION	protein_coding	F12	chromosome:C_jacchus3.2.1:2:1:204313951:1	61761619	61769989	D	coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
ENSCJAG00000006044	KNOWN_BY_PROJECTION	protein_coding	RIBC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	51245646	51257994	D	RIB43A domain with coiled-coils 1 [Source:HGNC Symbol;Acc:HGNC:26537]
ENSCJAG00000011260	NOVEL	protein_coding	ENSCJAG00000011260	chromosome:C_jacchus3.2.1:7:1:155834243:1	33670958	33858586	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020742}  [Source:UniProtKB/TrEMBL;Acc:F7H127]
ENSCJAG00000006053	KNOWN	protein_coding	HSD17B10	chromosome:C_jacchus3.2.1:X:1:142054208:1	51258255	51261310	R	3-hydroxyacyl-CoA dehydrogenase type-2 isoform 1 {ECO:0000313|EMBL:JAB01641.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011156}  [Source:UniProtKB/TrEMBL;Acc:F7I1V5]
ENSCJAG00000017930	NOVEL	protein_coding	ENSCJAG00000017930	chromosome:C_jacchus3.2.1:1:1:210400635:1	198618186	198624598	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033104}  [Source:UniProtKB/TrEMBL;Acc:F6SXV0]
ENSCJAG00000013440	KNOWN	protein_coding	RARA	chromosome:C_jacchus3.2.1:5:1:159171411:1	112128926	112168741	D	Retinoic acid receptor alpha isoform 1 {ECO:0000313|EMBL:JAB06110.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051262}  [Source:UniProtKB/TrEMBL;Acc:F6VKD1]
ENSCJAG00000034336	KNOWN_BY_PROJECTION	protein_coding	ZNF479	chromosome:C_jacchus3.2.1:7:1:155834243:1	34029425	34041196	D	zinc finger protein 479 [Source:HGNC Symbol;Acc:HGNC:23258]
ENSCJAG00000006599	NOVEL	protein_coding	ENSCJAG00000006599	chromosome:C_jacchus3.2.1:18:1:47448759:1	4535337	4554120	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045878}  [Source:UniProtKB/TrEMBL;Acc:F6Q081]
ENSCJAG00000006605	KNOWN	protein_coding	MCL1	chromosome:C_jacchus3.2.1:18:1:47448759:1	4550421	4554050	R	Induced myeloid leukemia cell differentiation protein Mcl-1 isoform 1 {ECO:0000313|EMBL:JAB09222.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012207}  [Source:UniProtKB/TrEMBL;Acc:F7GTF7]
ENSCJAG00000013475	KNOWN_BY_PROJECTION	protein_coding	GJD3	chromosome:C_jacchus3.2.1:5:1:159171411:1	112172547	112175597	R	gap junction protein, delta 3, 31.9kDa [Source:HGNC Symbol;Acc:HGNC:19147]
ENSCJAG00000006076	KNOWN_BY_PROJECTION	protein_coding	HUWE1	chromosome:C_jacchus3.2.1:X:1:142054208:1	51334486	51502405	R	HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:30892]
ENSCJAG00000005096	KNOWN_BY_PROJECTION	protein_coding	TNPO2	chromosome:C_jacchus3.2.1:22:1:49145316:1	11889499	11916342	R	transportin 2 [Source:HGNC Symbol;Acc:HGNC:19998]
ENSCJAG00000006621	KNOWN	protein_coding	ENSA	chromosome:C_jacchus3.2.1:18:1:47448759:1	4589513	4608814	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047634}  [Source:UniProtKB/TrEMBL;Acc:F7GXK9]
ENSCJAG00000013642	KNOWN_BY_PROJECTION	protein_coding	MYH9	chromosome:C_jacchus3.2.1:1:1:210400635:1	198642344	198756314	R	myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:HGNC:7579]
ENSCJAG00000007434	KNOWN_BY_PROJECTION	protein_coding	COL4A5	chromosome:C_jacchus3.2.1:X:1:142054208:1	97091917	97345361	D	collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
ENSCJAG00000013478	KNOWN_BY_PROJECTION	protein_coding	TOP2A	chromosome:C_jacchus3.2.1:5:1:159171411:1	112196549	112227396	R	topoisomerase (DNA) II alpha 170kDa [Source:HGNC Symbol;Acc:HGNC:11989]
ENSCJAG00000005083	KNOWN_BY_PROJECTION	protein_coding	C19orf43	chromosome:C_jacchus3.2.1:22:1:49145316:1	11923690	11927703	R	chromosome 19 open reading frame 43 [Source:HGNC Symbol;Acc:HGNC:28424]
ENSCJAG00000002308	KNOWN_BY_PROJECTION	protein_coding	TCF20	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	123684	129341	D	transcription factor 20 (AR1) [Source:HGNC Symbol;Acc:HGNC:11631]
ENSCJAG00000017662	NOVEL	pseudogene	ENSCJAG00000017662	scaffold:C_jacchus3.2.1:GL284732.1:1:59753:1	10659	11399	D	<no descrition>
ENSCJAG00000005039	KNOWN_BY_PROJECTION	protein_coding	ASNA1	chromosome:C_jacchus3.2.1:22:1:49145316:1	11931987	11941332	D	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [Source:HGNC Symbol;Acc:HGNC:752]
ENSCJAG00000006684	KNOWN	protein_coding	GOLPH3L	chromosome:C_jacchus3.2.1:18:1:47448759:1	4637586	4681263	R	Golgi phosphoprotein 3-like {ECO:0000313|EMBL:JAB05096.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012364}  [Source:UniProtKB/TrEMBL;Acc:F7H8H5]
ENSCJAG00000005020	KNOWN_BY_PROJECTION	protein_coding	BEST2	chromosome:C_jacchus3.2.1:22:1:49145316:1	11947066	11954196	D	bestrophin 2 [Source:HGNC Symbol;Acc:HGNC:17107]
ENSCJAG00000022019	KNOWN	protein_coding	TBCC	chromosome:C_jacchus3.2.1:22:1:49145316:1	11959264	11961206	R	Tubulin-specific chaperone C {ECO:0000313|EMBL:JAB43020.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040689}  [Source:UniProtKB/TrEMBL;Acc:F7I4P0]
ENSCJAG00000006260	NOVEL	protein_coding	ENSCJAG00000006260	chromosome:C_jacchus3.2.1:X:1:142054208:1	51566092	51848475	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011608}  [Source:UniProtKB/TrEMBL;Acc:F7DNB9]
ENSCJAG00000006841	NOVEL	pseudogene	ENSCJAG00000006841	chromosome:C_jacchus3.2.1:2:1:204313951:1	61771775	61772275	D	<no descrition>
ENSCJAG00000004942	KNOWN_BY_PROJECTION	protein_coding	HOOK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	11961649	11978338	R	hook microtubule-tethering protein 2 [Source:HGNC Symbol;Acc:HGNC:19885]
ENSCJAG00000033540	NOVEL	pseudogene	ENSCJAG00000033540	chromosome:C_jacchus3.2.1:7:1:155834243:1	34058204	34058794	R	<no descrition>
ENSCJAG00000006705	KNOWN_BY_PROJECTION	protein_coding	HORMAD1	chromosome:C_jacchus3.2.1:18:1:47448759:1	4682473	4705854	R	HORMA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25245]
ENSCJAG00000011498	NOVEL	protein_coding	ENSCJAG00000011498	chromosome:C_jacchus3.2.1:7:1:155834243:1	35326584	35338093	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021151}  [Source:UniProtKB/TrEMBL;Acc:F6SLX5]
ENSCJAG00000011491	KNOWN_BY_PROJECTION	protein_coding	SAMD11	chromosome:C_jacchus3.2.1:7:1:155834243:1	35441193	35460789	D	sterile alpha motif domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28706]
ENSCJAG00000006845	KNOWN_BY_PROJECTION	protein_coding	SLC34A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	61773842	61791261	R	solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
ENSCJAG00000004939	NOVEL	pseudogene	ENSCJAG00000004939	chromosome:C_jacchus3.2.1:22:1:49145316:1	11994046	11995089	D	<no descrition>
ENSCJAG00000011380	KNOWN_BY_PROJECTION	protein_coding	NOC2L	chromosome:C_jacchus3.2.1:7:1:155834243:1	35462600	35479132	R	nucleolar complex associated 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24517]
ENSCJAG00000037008	NOVEL	protein_coding	ENSCJAG00000037008	chromosome:C_jacchus3.2.1:7:1:155834243:1	35482199	35491906	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021112}  [Source:UniProtKB/TrEMBL;Acc:F6T7N3]
ENSCJAG00000016881	NOVEL	protein_coding	ENSCJAG00000016881	scaffold:C_jacchus3.2.1:GL286257.1:1:60026:1	50229	51899	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031065}  [Source:UniProtKB/TrEMBL;Acc:H9KX84]
ENSCJAG00000011440	KNOWN_BY_PROJECTION	protein_coding	PLEKHN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	35486150	35496428	D	pleckstrin homology domain containing, family N member 1 [Source:HGNC Symbol;Acc:HGNC:25284]
ENSCJAG00000005654	KNOWN_BY_PROJECTION	protein_coding	YJEFN3	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	301927	304729	D	YjeF N-terminal domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24785]
ENSCJAG00000011430	KNOWN_BY_PROJECTION	protein_coding	PERM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	35496144	35501996	R	PPARGC1 and ESRR induced regulator, muscle 1 [Source:HGNC Symbol;Acc:HGNC:28208]
ENSCJAG00000013550	KNOWN	protein_coding	IGFBP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	112246096	112262064	D	Insulin-like growth factor-binding protein 4 {ECO:0000313|EMBL:JAB10085.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024921}  [Source:UniProtKB/TrEMBL;Acc:F6RPW3]
ENSCJAG00000016469	NOVEL	protein_coding	ENSCJAG00000016469	scaffold:C_jacchus3.2.1:GL288848.1:1:9671:1	7015	8410	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030311}  [Source:UniProtKB/TrEMBL;Acc:H9KX77]
ENSCJAG00000011428	KNOWN_BY_PROJECTION	protein_coding	ISG15	chromosome:C_jacchus3.2.1:7:1:155834243:1	35530769	35531796	D	ISG15 ubiquitin-like modifier [Source:HGNC Symbol;Acc:HGNC:4053]
ENSCJAG00000006315	KNOWN_BY_PROJECTION	protein_coding	FAM120C	chromosome:C_jacchus3.2.1:X:1:142054208:1	51905224	52008608	R	family with sequence similarity 120C [Source:HGNC Symbol;Acc:HGNC:16949]
ENSCJAG00000013560	KNOWN_BY_PROJECTION	protein_coding	TNS4	chromosome:C_jacchus3.2.1:5:1:159171411:1	112281705	112303602	R	tensin 4 [Source:HGNC Symbol;Acc:HGNC:24352]
ENSCJAG00000013569	KNOWN_BY_PROJECTION	protein_coding	CCR7	chromosome:C_jacchus3.2.1:5:1:159171411:1	112362583	112373817	R	chemokine (C-C motif) receptor 7 [Source:HGNC Symbol;Acc:HGNC:1608]
ENSCJAG00000006873	KNOWN_BY_PROJECTION	protein_coding	RGS14	chromosome:C_jacchus3.2.1:2:1:204313951:1	61803389	61818506	R	regulator of G-protein signaling 14 [Source:HGNC Symbol;Acc:HGNC:9996]
ENSCJAG00000001335	KNOWN	protein_coding	PNISR	chromosome:C_jacchus3.2.1:4:1:171630274:1	98583377	98608955	R	Arginine/serine-rich protein PNISR {ECO:0000313|EMBL:JAB08698.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002381}  [Source:UniProtKB/TrEMBL;Acc:F7IBT7]
ENSCJAG00000011412	KNOWN_BY_PROJECTION	protein_coding	AGRN	chromosome:C_jacchus3.2.1:7:1:155834243:1	35536285	35572841	D	agrin [Source:HGNC Symbol;Acc:HGNC:329]
ENSCJAG00000013645	KNOWN_BY_PROJECTION	protein_coding	KRT26	chromosome:C_jacchus3.2.1:5:1:159171411:1	112381018	112575945	R	keratin 26 [Source:HGNC Symbol;Acc:HGNC:30840]
ENSCJAG00000000221	KNOWN_BY_PROJECTION	protein_coding	WNK3	chromosome:C_jacchus3.2.1:X:1:142054208:1	52025106	52181241	R	WNK lysine deficient protein kinase 3 [Source:HGNC Symbol;Acc:HGNC:14543]
ENSCJAG00000000251	KNOWN_BY_PROJECTION	protein_coding	TSR2	chromosome:C_jacchus3.2.1:X:1:142054208:1	52299411	52303412	D	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25455]
ENSCJAG00000011328	KNOWN_BY_PROJECTION	protein_coding	B3GALT6	chromosome:C_jacchus3.2.1:7:1:155834243:1	35586290	35743668	D	UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:17978]
ENSCJAG00000011411	NOVEL	pseudogene	ENSCJAG00000011411	chromosome:C_jacchus3.2.1:7:1:155834243:1	35590682	35591453	R	<no descrition>
ENSCJAG00000012735	KNOWN_BY_PROJECTION	protein_coding	C10orf120	scaffold:C_jacchus3.2.1:GL285851.1:1:10933:1	5863	7570	R	chromosome 10 open reading frame 120 [Source:HGNC Symbol;Acc:HGNC:25707]
ENSCJAG00000009373	NOVEL	protein_coding	ENSCJAG00000009373	scaffold:C_jacchus3.2.1:ACFV01189942.1:1:4830:1	1360	3036	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017163}  [Source:UniProtKB/TrEMBL;Acc:H9KWL3]
ENSCJAG00000011405	KNOWN_BY_PROJECTION	protein_coding	C1orf159	chromosome:C_jacchus3.2.1:7:1:155834243:1	35599237	35611172	R	chromosome 1 open reading frame 159 [Source:HGNC Symbol;Acc:HGNC:26062]
ENSCJAG00000000230	KNOWN_BY_PROJECTION	protein_coding	FGD1	chromosome:C_jacchus3.2.1:X:1:142054208:1	52304271	52357238	R	FYVE, RhoGEF and PH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:3663]
ENSCJAG00000013573	KNOWN	protein_coding	ENSCJAG00000013573	chromosome:C_jacchus3.2.1:5:1:159171411:1	112446540	112466877	R	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 {ECO:0000313|EMBL:JAB10064.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024993}  [Source:UniProtKB/TrEMBL;Acc:F6QHH7]
ENSCJAG00000005312	NOVEL	protein_coding	ENSCJAG00000005312	chromosome:C_jacchus3.2.1:7:1:155834243:1	35642421	35646060	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009712}  [Source:UniProtKB/TrEMBL;Acc:F7H1Z3]
ENSCJAG00000032817	NOVEL	protein_coding	ENSCJAG00000032817	chromosome:C_jacchus3.2.1:7:1:155834243:1	35692722	35694274	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045505}  [Source:UniProtKB/TrEMBL;Acc:F6TSG5]
ENSCJAG00000006916	KNOWN	protein_coding	LMAN2	chromosome:C_jacchus3.2.1:2:1:204313951:1	61825473	61851109	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012843}; Vesicular integral-membrane protein VIP36 {ECO:0000313|EMBL:JAB07885.1}  [Source:UniProtKB/TrEMBL;Acc:F6PM88]
ENSCJAG00000011243	KNOWN_BY_PROJECTION	protein_coding	TTLL10	chromosome:C_jacchus3.2.1:7:1:155834243:1	35696156	35706009	D	tubulin tyrosine ligase-like family member 10 [Source:HGNC Symbol;Acc:HGNC:26693]
ENSCJAG00000004882	KNOWN	protein_coding	PRDX2	chromosome:C_jacchus3.2.1:22:1:49145316:1	12000697	12005265	R	Peroxiredoxin-2 isoform a {ECO:0000313|EMBL:JAB08164.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009001}  [Source:UniProtKB/TrEMBL;Acc:F7IDF0]
ENSCJAG00000011360	KNOWN	protein_coding	TNFRSF18	chromosome:C_jacchus3.2.1:7:1:155834243:1	35712014	35715025	R	Callithrix jacchus tumor necrosis factor receptor superfamily, member 18 (TNFRSF18), mRNA. [Source:RefSeq mRNA;Acc:NM_001267758]
ENSCJAG00000006790	KNOWN	protein_coding	CTSS	chromosome:C_jacchus3.2.1:18:1:47448759:1	4714653	4742960	R	Cathepsin S isoform 1 preproprotein {ECO:0000313|EMBL:JAB01925.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012586}  [Source:UniProtKB/TrEMBL;Acc:F7GCX7]
ENSCJAG00000011350	KNOWN_BY_PROJECTION	protein_coding	TNFRSF4	chromosome:C_jacchus3.2.1:7:1:155834243:1	35719215	35722740	R	tumor necrosis factor receptor superfamily, member 4 [Source:HGNC Symbol;Acc:HGNC:11918]
ENSCJAG00000000252	KNOWN_BY_PROJECTION	protein_coding	GNL3L	chromosome:C_jacchus3.2.1:X:1:142054208:1	52403861	52428228	D	guanine nucleotide binding protein-like 3 (nucleolar)-like [Source:HGNC Symbol;Acc:HGNC:25553]
ENSCJAG00000007424	NOVEL	pseudogene	ENSCJAG00000007424	chromosome:C_jacchus3.2.1:X:1:142054208:1	97389296	97393223	R	<no descrition>
ENSCJAG00000011333	KNOWN_BY_PROJECTION	protein_coding	SDF4	chromosome:C_jacchus3.2.1:7:1:155834243:1	35725905	35739462	R	stromal cell derived factor 4 [Source:HGNC Symbol;Acc:HGNC:24188]
ENSCJAG00000004873	KNOWN_BY_PROJECTION	protein_coding	RNASEH2A	chromosome:C_jacchus3.2.1:22:1:49145316:1	12009364	12016389	D	ribonuclease H2, subunit A [Source:HGNC Symbol;Acc:HGNC:18518]
ENSCJAG00000017505	NOVEL	protein_coding	ENSCJAG00000017505	scaffold:C_jacchus3.2.1:ACFV01182014.1:1:17853:1	793	2773	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032235}  [Source:UniProtKB/TrEMBL;Acc:H9KXB5]
ENSCJAG00000007378	KNOWN_BY_PROJECTION	protein_coding	GUCY2F	chromosome:C_jacchus3.2.1:X:1:142054208:1	97935952	98043264	R	guanylate cyclase 2F, retinal [Source:HGNC Symbol;Acc:HGNC:4691]
ENSCJAG00000006804	KNOWN_BY_PROJECTION	protein_coding	CTSK	chromosome:C_jacchus3.2.1:18:1:47448759:1	4768856	4783120	R	cathepsin K [Source:HGNC Symbol;Acc:HGNC:2536]
ENSCJAG00000004863	KNOWN_BY_PROJECTION	protein_coding	RTBDN	chromosome:C_jacchus3.2.1:22:1:49145316:1	12026430	12036162	R	retbindin [Source:HGNC Symbol;Acc:HGNC:30310]
ENSCJAG00000031505	KNOWN_BY_PROJECTION	protein_coding	ITIH6	chromosome:C_jacchus3.2.1:X:1:142054208:1	52583251	52626259	R	inter-alpha-trypsin inhibitor heavy chain family, member 6 [Source:HGNC Symbol;Acc:HGNC:28907]
ENSCJAG00000011286	KNOWN_BY_PROJECTION	protein_coding	SCNN1D	chromosome:C_jacchus3.2.1:7:1:155834243:1	35745070	35802607	D	sodium channel, non voltage gated 1 delta subunit [Source:HGNC Symbol;Acc:HGNC:10601]
ENSCJAG00000007369	KNOWN_BY_PROJECTION	protein_coding	NXT2	chromosome:C_jacchus3.2.1:X:1:142054208:1	98101055	98108181	D	nuclear transport factor 2-like export factor 2 [Source:HGNC Symbol;Acc:HGNC:18151]
ENSCJAG00000035627	KNOWN	protein_coding	KRT222	chromosome:C_jacchus3.2.1:5:1:159171411:1	112447607	112484278	R	Keratin-like protein KRT222 {ECO:0000313|EMBL:JAB46429.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025014}  [Source:UniProtKB/TrEMBL;Acc:F7AJS8]
ENSCJAG00000006942	NOVEL	protein_coding	ENSCJAG00000006942	chromosome:C_jacchus3.2.1:2:1:204313951:1	61874166	61874707	D	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F6PM79]
ENSCJAG00000023434	KNOWN	protein_coding	KCNE1L	chromosome:C_jacchus3.2.1:X:1:142054208:1	98177970	98179642	R	Potassium voltage-gated channel subfamily E member 1-like protein {ECO:0000313|EMBL:JAB12553.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041927}  [Source:UniProtKB/TrEMBL;Acc:F7GUE7]
ENSCJAG00000004772	KNOWN	protein_coding	MAST1	chromosome:C_jacchus3.2.1:22:1:49145316:1	12034368	12081348	D	Microtubule-associated serine/threonine-protein kinase 1 {ECO:0000313|EMBL:JAB19312.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008865}  [Source:UniProtKB/TrEMBL;Acc:F7IHG3]
ENSCJAG00000006943	KNOWN_BY_PROJECTION	protein_coding	MXD3	chromosome:C_jacchus3.2.1:2:1:204313951:1	61881544	61887138	D	MAX dimerization protein 3 [Source:HGNC Symbol;Acc:HGNC:14008]
ENSCJAG00000013811	NOVEL	pseudogene	ENSCJAG00000013811	chromosome:C_jacchus3.2.1:1:1:210400635:1	198771439	198771839	R	<no descrition>
ENSCJAG00000013818	NOVEL	pseudogene	ENSCJAG00000013818	chromosome:C_jacchus3.2.1:1:1:210400635:1	198776025	198776421	D	<no descrition>
ENSCJAG00000013821	NOVEL	pseudogene	ENSCJAG00000013821	chromosome:C_jacchus3.2.1:1:1:210400635:1	198800371	198800747	R	<no descrition>
ENSCJAG00000022385	KNOWN	protein_coding	ENSCJAG00000022385	chromosome:C_jacchus3.2.1:1:1:210400635:1	198852960	198943087	R	Protein HEXIM2 {ECO:0000313|EMBL:JAB02420.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041014}  [Source:UniProtKB/TrEMBL;Acc:F7FGZ7]
ENSCJAG00000034830	KNOWN_BY_PROJECTION	protein_coding	KRT24	chromosome:C_jacchus3.2.1:5:1:159171411:1	112514313	112519866	R	keratin 24 [Source:HGNC Symbol;Acc:HGNC:18527]
ENSCJAG00000007581	KNOWN	protein_coding	MAGED2	chromosome:C_jacchus3.2.1:X:1:142054208:1	52636345	52644518	D	Melanoma-associated antigen D2 {ECO:0000313|EMBL:JAB11730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014236}  [Source:UniProtKB/TrEMBL;Acc:F7HVB2]
ENSCJAG00000013822	KNOWN	protein_coding	FOXRED2	chromosome:C_jacchus3.2.1:1:1:210400635:1	198857988	198872947	R	FAD-dependent oxidoreductase domain-containing protein 2 {ECO:0000313|EMBL:JAB25579.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025427}  [Source:UniProtKB/TrEMBL;Acc:F6W1D8]
ENSCJAG00000007315	KNOWN_BY_PROJECTION	protein_coding	ACSL4	chromosome:C_jacchus3.2.1:X:1:142054208:1	98196269	98284830	R	acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
ENSCJAG00000001356	KNOWN	protein_coding	USP45	chromosome:C_jacchus3.2.1:4:1:171630274:1	98614286	98693875	R	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7I004]
ENSCJAG00000006839	KNOWN	protein_coding	ARNT	chromosome:C_jacchus3.2.1:18:1:47448759:1	4786447	4849157	R	Aryl hydrocarbon receptor nuclear translocator isoform 1 {ECO:0000313|EMBL:JAB13245.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012901}  [Source:UniProtKB/TrEMBL;Acc:F6SBL2]
ENSCJAG00000006953	KNOWN	protein_coding	PRELID1	chromosome:C_jacchus3.2.1:2:1:204313951:1	61886822	61892249	R	PRELI domain-containing protein 1, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB07044.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012898}  [Source:UniProtKB/TrEMBL;Acc:F6T9K4]
ENSCJAG00000007723	NOVEL	pseudogene	ENSCJAG00000007723	chromosome:C_jacchus3.2.1:X:1:142054208:1	52736863	52738360	R	<no descrition>
ENSCJAG00000004764	KNOWN_BY_PROJECTION	protein_coding	DNASE2	chromosome:C_jacchus3.2.1:22:1:49145316:1	12082299	12086788	R	deoxyribonuclease II, lysosomal [Source:HGNC Symbol;Acc:HGNC:2960]
ENSCJAG00000031571	NOVEL	protein_coding	ENSCJAG00000031571	chromosome:C_jacchus3.2.1:4:1:171630274:1	98715701	98716791	D	Sulfurtransferase {ECO:0000256|RuleBase:RU000507}  [Source:UniProtKB/TrEMBL;Acc:F7BKF1]
ENSCJAG00000013636	KNOWN_BY_PROJECTION	protein_coding	KRT25	chromosome:C_jacchus3.2.1:5:1:159171411:1	112555182	112562607	R	keratin 25 [Source:HGNC Symbol;Acc:HGNC:30839]
ENSCJAG00000004762	KNOWN_BY_PROJECTION	protein_coding	KLF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	12088364	12093128	R	Kruppel-like factor 1 (erythroid) [Source:HGNC Symbol;Acc:HGNC:6345]
ENSCJAG00000007728	KNOWN_BY_PROJECTION	protein_coding	TRO	chromosome:C_jacchus3.2.1:X:1:142054208:1	52763374	52774313	D	trophinin [Source:HGNC Symbol;Acc:HGNC:12326]
ENSCJAG00000013658	KNOWN_BY_PROJECTION	protein_coding	KRT27	chromosome:C_jacchus3.2.1:5:1:159171411:1	112581132	112586512	R	keratin 27 [Source:HGNC Symbol;Acc:HGNC:30841]
ENSCJAG00000006969	KNOWN	protein_coding	RAB24	chromosome:C_jacchus3.2.1:2:1:204313951:1	61892305	61894834	D	Ras-related protein Rab-24 {ECO:0000313|EMBL:JAB09814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012974}  [Source:UniProtKB/TrEMBL;Acc:F6R3Q9]
ENSCJAG00000001388	KNOWN	protein_coding	CCNC	chromosome:C_jacchus3.2.1:4:1:171630274:1	98726073	98755932	R	Cyclin-C isoform a {ECO:0000313|EMBL:JAB02478.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002509}  [Source:UniProtKB/TrEMBL;Acc:F7INF5]
ENSCJAG00000013831	KNOWN	protein_coding	EIF3D	chromosome:C_jacchus3.2.1:1:1:210400635:1	198877944	198893198	R	Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003}  [Source:UniProtKB/TrEMBL;Acc:F7CC89]
ENSCJAG00000013664	KNOWN_BY_PROJECTION	protein_coding	KRT28	chromosome:C_jacchus3.2.1:5:1:159171411:1	112591634	112601621	R	keratin 28 [Source:HGNC Symbol;Acc:HGNC:30842]
ENSCJAG00000033354	NOVEL	pseudogene	ENSCJAG00000033354	chromosome:C_jacchus3.2.1:5:1:159171411:1	112643032	112643483	D	<no descrition>
ENSCJAG00000013609	KNOWN_BY_PROJECTION	protein_coding	KRT12	chromosome:C_jacchus3.2.1:5:1:159171411:1	112668497	112674950	R	keratin 12 [Source:HGNC Symbol;Acc:HGNC:6414]
ENSCJAG00000007366	NOVEL	pseudogene	ENSCJAG00000007366	chromosome:C_jacchus3.2.1:X:1:142054208:1	98278749	98279090	D	<no descrition>
ENSCJAG00000007295	KNOWN_BY_PROJECTION	protein_coding	TMEM164	chromosome:C_jacchus3.2.1:X:1:142054208:1	98536561	98718285	D	transmembrane protein 164 [Source:HGNC Symbol;Acc:HGNC:26217]
ENSCJAG00000006968	NOVEL	protein_coding	ENSCJAG00000006968	chromosome:C_jacchus3.2.1:18:1:47448759:1	4861791	4863870	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012908}  [Source:UniProtKB/TrEMBL;Acc:F6S249]
ENSCJAG00000007293	NOVEL	pseudogene	ENSCJAG00000007293	chromosome:C_jacchus3.2.1:X:1:142054208:1	98716443	98716902	D	<no descrition>
ENSCJAG00000016601	KNOWN_BY_PROJECTION	protein_coding	PFKFB1	chromosome:C_jacchus3.2.1:X:1:142054208:1	52776278	52803799	R	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:8872]
ENSCJAG00000013679	KNOWN_BY_PROJECTION	protein_coding	KRT20	chromosome:C_jacchus3.2.1:5:1:159171411:1	112686273	112695597	R	keratin 20 [Source:HGNC Symbol;Acc:HGNC:20412]
ENSCJAG00000016584	KNOWN	protein_coding	APEX2	chromosome:C_jacchus3.2.1:X:1:142054208:1	52838769	52848953	D	DNA-(Apurinic or apyrimidinic site) lyase 2 isoform 1 {ECO:0000313|EMBL:JAB05474.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030530}  [Source:UniProtKB/TrEMBL;Acc:F6XGV2]
ENSCJAG00000007275	KNOWN_BY_PROJECTION	protein_coding	AMMECR1	chromosome:C_jacchus3.2.1:X:1:142054208:1	98734342	98977255	R	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 [Source:HGNC Symbol;Acc:HGNC:467]
ENSCJAG00000004741	KNOWN	protein_coding	GCDH	chromosome:C_jacchus3.2.1:22:1:49145316:1	12100957	12110126	D	Glutaryl-CoA dehydrogenase, mitochondrial isoform a {ECO:0000313|EMBL:JAB02062.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008649}  [Source:UniProtKB/TrEMBL;Acc:F7IF86]
ENSCJAG00000008535	NOVEL	pseudogene	ENSCJAG00000008535	scaffold:C_jacchus3.2.1:ACFV01182815.1:1:6586:1	4707	5545	R	<no descrition>
ENSCJAG00000006972	KNOWN	protein_coding	SETDB1	chromosome:C_jacchus3.2.1:18:1:47448759:1	4896236	4934463	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042412}  [Source:UniProtKB/TrEMBL;Acc:F7B9J0]
ENSCJAG00000016542	KNOWN_BY_PROJECTION	protein_coding	ALAS2	chromosome:C_jacchus3.2.1:X:1:142054208:1	52850237	52873059	R	5'-aminolevulinate synthase 2 [Source:HGNC Symbol;Acc:HGNC:397]
ENSCJAG00000001421	KNOWN_BY_PROJECTION	protein_coding	PRDM13	chromosome:C_jacchus3.2.1:4:1:171630274:1	98791870	98801097	D	PR domain containing 13 [Source:HGNC Symbol;Acc:HGNC:13998]
ENSCJAG00000016537	NOVEL	protein_coding	ENSCJAG00000016537	chromosome:C_jacchus3.2.1:X:1:142054208:1	52935803	52939860	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030422}  [Source:UniProtKB/TrEMBL;Acc:F7BSA2]
ENSCJAG00000007009	KNOWN	protein_coding	NSD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	61895807	62057013	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013159}  [Source:UniProtKB/TrEMBL;Acc:F6UCM0]
ENSCJAG00000013694	KNOWN_BY_PROJECTION	protein_coding	KRT23	chromosome:C_jacchus3.2.1:5:1:159171411:1	112733406	112750025	R	keratin 23 (histone deacetylase inducible) [Source:HGNC Symbol;Acc:HGNC:6438]
ENSCJAG00000016507	NOVEL	protein_coding	ENSCJAG00000016507	chromosome:C_jacchus3.2.1:X:1:142054208:1	53083119	53171939	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050370}  [Source:UniProtKB/TrEMBL;Acc:F7FBY9]
ENSCJAG00000031607	KNOWN_BY_PROJECTION	protein_coding	FAM132A	chromosome:C_jacchus3.2.1:7:1:155834243:1	35755301	35757404	R	family with sequence similarity 132, member A [Source:HGNC Symbol;Acc:HGNC:32308]
ENSCJAG00000011323	NOVEL	protein_coding	ENSCJAG00000011323	chromosome:C_jacchus3.2.1:7:1:155834243:1	35757663	35760289	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020835}  [Source:UniProtKB/TrEMBL;Acc:F7EQV6]
ENSCJAG00000011315	KNOWN	protein_coding	UBE2J2	chromosome:C_jacchus3.2.1:7:1:155834243:1	35766696	35784008	R	Ubiquitin-conjugating enzyme E2 J2 isoform 2 {ECO:0000313|EMBL:JAB06919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020827}  [Source:UniProtKB/TrEMBL;Acc:F7F3X4]
ENSCJAG00000004733	KNOWN_BY_PROJECTION	protein_coding	SYCE2	chromosome:C_jacchus3.2.1:22:1:49145316:1	12108950	12126606	R	synaptonemal complex central element protein 2 [Source:HGNC Symbol;Acc:HGNC:27411]
ENSCJAG00000016531	NOVEL	protein_coding	ENSCJAG00000016531	chromosome:C_jacchus3.2.1:X:1:142054208:1	53084113	53085586	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046769}  [Source:UniProtKB/TrEMBL;Acc:F7I1C8]
ENSCJAG00000016523	KNOWN_BY_PROJECTION	protein_coding	PAGE3	chromosome:C_jacchus3.2.1:X:1:142054208:1	53134684	53140781	R	P antigen family, member 3 (prostate associated) [Source:HGNC Symbol;Acc:HGNC:4110]
ENSCJAG00000007015	NOVEL	pseudogene	ENSCJAG00000007015	chromosome:C_jacchus3.2.1:X:1:142054208:1	53340206	53341497	D	<no descrition>
ENSCJAG00000023436	KNOWN_BY_PROJECTION	protein_coding	USP51	chromosome:C_jacchus3.2.1:X:1:142054208:1	53382916	53385247	R	ubiquitin specific peptidase 51 [Source:HGNC Symbol;Acc:HGNC:23086]
ENSCJAG00000007345	NOVEL	pseudogene	ENSCJAG00000007345	chromosome:C_jacchus3.2.1:X:1:142054208:1	53494137	53494726	D	<no descrition>
ENSCJAG00000007265	KNOWN_BY_PROJECTION	protein_coding	RGAG1	chromosome:C_jacchus3.2.1:X:1:142054208:1	98986968	98991691	D	retrotransposon gag domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29245]
ENSCJAG00000004686	KNOWN_BY_PROJECTION	protein_coding	FARSA	chromosome:C_jacchus3.2.1:22:1:49145316:1	12129598	12141447	R	phenylalanyl-tRNA synthetase, alpha subunit [Source:HGNC Symbol;Acc:HGNC:3592]
ENSCJAG00000007043	KNOWN	protein_coding	CERS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	4934889	4944700	R	Ceramide synthase 2 {ECO:0000313|EMBL:JAB05768.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013125}  [Source:UniProtKB/TrEMBL;Acc:F6VJF4]
ENSCJAG00000011211	KNOWN_BY_PROJECTION	protein_coding	ACAP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	35803010	35820151	R	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 [Source:HGNC Symbol;Acc:HGNC:16754]
ENSCJAG00000007317	KNOWN	protein_coding	RRAGB	chromosome:C_jacchus3.2.1:X:1:142054208:1	53590035	53638677	D	Ras-related GTP-binding protein B short isoform {ECO:0000313|EMBL:JAB10369.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013666}  [Source:UniProtKB/TrEMBL;Acc:F7BGE5]
ENSCJAG00000007238	KNOWN	protein_coding	CHRDL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	99198835	99325205	R	Chordin-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB03420.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049845}  [Source:UniProtKB/TrEMBL;Acc:F6ZC35]
ENSCJAG00000032076	NOVEL	protein_coding	ENSCJAG00000032076	chromosome:C_jacchus3.2.1:X:1:142054208:1	53664661	53665590	D	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F7HQY5]
ENSCJAG00000010972	KNOWN_BY_PROJECTION	protein_coding	PUSL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	35821563	35991796	D	pseudouridylate synthase-like 1 [Source:HGNC Symbol;Acc:HGNC:26914]
ENSCJAG00000013697	KNOWN_BY_PROJECTION	protein_coding	KRT39	chromosome:C_jacchus3.2.1:5:1:159171411:1	112796122	112804185	R	keratin 39 [Source:HGNC Symbol;Acc:HGNC:32971]
ENSCJAG00000007304	NOVEL	protein_coding	ENSCJAG00000007304	chromosome:C_jacchus3.2.1:X:1:142054208:1	53990514	54047405	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013613}  [Source:UniProtKB/TrEMBL;Acc:F7CT63]
ENSCJAG00000001474	KNOWN_BY_PROJECTION	protein_coding	MCHR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	99164065	99222672	R	melanin-concentrating hormone receptor 2 [Source:HGNC Symbol;Acc:HGNC:20867]
ENSCJAG00000013706	KNOWN_BY_PROJECTION	protein_coding	KRT40	chromosome:C_jacchus3.2.1:5:1:159171411:1	112815680	112822001	R	keratin 40 [Source:HGNC Symbol;Acc:HGNC:26707]
ENSCJAG00000007313	NOVEL	protein_coding	ENSCJAG00000007313	chromosome:C_jacchus3.2.1:X:1:142054208:1	54034686	54035287	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013620}  [Source:UniProtKB/TrEMBL;Acc:F7CSV5]
ENSCJAG00000007299	NOVEL	pseudogene	ENSCJAG00000007299	chromosome:C_jacchus3.2.1:X:1:142054208:1	54229454	54232754	D	<no descrition>
ENSCJAG00000032808	NOVEL	pseudogene	ENSCJAG00000032808	chromosome:C_jacchus3.2.1:4:1:171630274:1	99389264	99389859	D	<no descrition>
ENSCJAG00000016716	NOVEL	protein_coding	ENSCJAG00000016716	chromosome:C_jacchus3.2.1:X:1:142054208:1	54445000	54445485	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030623}  [Source:UniProtKB/TrEMBL;Acc:F7BR61]
ENSCJAG00000003863	KNOWN	protein_coding	SPIN3	chromosome:C_jacchus3.2.1:X:1:142054208:1	54583084	54587533	R	Spindlin-3 {ECO:0000313|EMBL:JAB04151.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007024}  [Source:UniProtKB/TrEMBL;Acc:F6PV54]
ENSCJAG00000001495	KNOWN_BY_PROJECTION	protein_coding	SIM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	99647960	99724986	R	single-minded family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10882]
ENSCJAG00000031217	NOVEL	pseudogene	ENSCJAG00000031217	scaffold:C_jacchus3.2.1:ACFV01177327.1:1:17607:1	14377	15330	D	<no descrition>
ENSCJAG00000008587	KNOWN	protein_coding	SPIN2B	chromosome:C_jacchus3.2.1:X:1:142054208:1	54635348	54636967	R	Spindlin-2B {ECO:0000313|EMBL:JAB02226.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043055}  [Source:UniProtKB/TrEMBL;Acc:F7HWD4]
ENSCJAG00000034494	KNOWN	protein_coding	FAAH2	chromosome:C_jacchus3.2.1:X:1:142054208:1	54666367	54700109	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044798}  [Source:UniProtKB/TrEMBL;Acc:F7FHH5]
ENSCJAG00000001506	NOVEL	pseudogene	ENSCJAG00000001506	chromosome:C_jacchus3.2.1:4:1:171630274:1	99697789	99698270	D	<no descrition>
ENSCJAG00000019494	KNOWN	protein_coding	ARHGEF9	chromosome:C_jacchus3.2.1:X:1:142054208:1	55957498	56122480	R	Rho guanine nucleotide exchange factor 9 isoform 2 {ECO:0000313|EMBL:JAB31585.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036229}  [Source:UniProtKB/TrEMBL;Acc:F7FQA6]
ENSCJAG00000013739	KNOWN_BY_PROJECTION	protein_coding	KRTAP4-6	chromosome:C_jacchus3.2.1:5:1:159171411:1	112868238	112999373	R	keratin associated protein 4-6 [Source:HGNC Symbol;Acc:HGNC:18909]
ENSCJAG00000004329	KNOWN_BY_PROJECTION	protein_coding	PATE2	scaffold:C_jacchus3.2.1:GL285487.1:1:18383:1	356	1253	R	prostate and testis expressed 2 [Source:HGNC Symbol;Acc:HGNC:32249]
ENSCJAG00000017848	KNOWN	protein_coding	AMER1	chromosome:C_jacchus3.2.1:X:1:142054208:1	56558229	56579589	R	APC membrane recruitment protein 1 {ECO:0000313|EMBL:JAB29574.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032933}  [Source:UniProtKB/TrEMBL;Acc:F7GVN4]
ENSCJAG00000001507	KNOWN_BY_PROJECTION	protein_coding	ASCC3	chromosome:C_jacchus3.2.1:4:1:171630274:1	99769167	100149372	R	activating signal cointegrator 1 complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:18697]
ENSCJAG00000011144	KNOWN	protein_coding	CPSF3L	chromosome:C_jacchus3.2.1:7:1:155834243:1	35824284	35836555	R	Integrator complex subunit 11 isoform 2 {ECO:0000313|EMBL:JAB11765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020639}  [Source:UniProtKB/TrEMBL;Acc:F7ERB2]
ENSCJAG00000017823	KNOWN	protein_coding	MTMR8	chromosome:C_jacchus3.2.1:X:1:142054208:1	56607870	56788358	R	Ankyrin repeat and SOCS box protein 12 {ECO:0000313|EMBL:JAB41347.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032923}  [Source:UniProtKB/TrEMBL;Acc:F7H0Q4]
ENSCJAG00000007168	KNOWN	protein_coding	PAK3	chromosome:C_jacchus3.2.1:X:1:142054208:1	99433553	99722029	D	Serine/threonine-protein kinase PAK 3 isoform a {ECO:0000313|EMBL:JAB13317.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013411}  [Source:UniProtKB/TrEMBL;Acc:F6X6S5]
ENSCJAG00000007078	KNOWN_BY_PROJECTION	protein_coding	ANXA9	chromosome:C_jacchus3.2.1:18:1:47448759:1	4952090	4968099	D	annexin A9 [Source:HGNC Symbol;Acc:HGNC:547]
ENSCJAG00000005388	NOVEL	protein_coding	ENSCJAG00000005388	scaffold:C_jacchus3.2.1:GL285167.1:1:22469:1	1025	2810	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009849}  [Source:UniProtKB/TrEMBL;Acc:H9KW70]
ENSCJAG00000004650	KNOWN	protein_coding	CALR	chromosome:C_jacchus3.2.1:22:1:49145316:1	12146922	12151430	D	Calreticulin {ECO:0000313|EMBL:JAB22977.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008491}  [Source:UniProtKB/TrEMBL;Acc:F7I5Y4]
ENSCJAG00000017813	KNOWN	protein_coding	ZC4H2	chromosome:C_jacchus3.2.1:X:1:142054208:1	56904966	57023676	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032872}; Zinc finger C4H2 domain-containing protein isoform 1 {ECO:0000313|EMBL:JAB05414.1}  [Source:UniProtKB/TrEMBL;Acc:F7CYZ8]
ENSCJAG00000007100	KNOWN_BY_PROJECTION	protein_coding	FAM63A	chromosome:C_jacchus3.2.1:18:1:47448759:1	4969487	4979795	R	family with sequence similarity 63, member A [Source:HGNC Symbol;Acc:HGNC:25648]
ENSCJAG00000031528	NOVEL	protein_coding	ENSCJAG00000031528	chromosome:C_jacchus3.2.1:X:1:142054208:1	57087263	57087832	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042337}  [Source:UniProtKB/TrEMBL;Acc:F6WAV6]
ENSCJAG00000013947	KNOWN	protein_coding	CACNG2	chromosome:C_jacchus3.2.1:1:1:210400635:1	198916784	199062438	R	Voltage-dependent calcium channel gamma subunit {ECO:0000256|RuleBase:RU361151}  [Source:UniProtKB/TrEMBL;Acc:F7BXH8]
ENSCJAG00000001427	KNOWN_BY_PROJECTION	protein_coding	ZC3H12B	chromosome:C_jacchus3.2.1:X:1:142054208:1	57421242	57435484	D	zinc finger CCCH-type containing 12B [Source:HGNC Symbol;Acc:HGNC:17407]
ENSCJAG00000031345	NOVEL	protein_coding	ENSCJAG00000031345	chromosome:C_jacchus3.2.1:5:1:159171411:1	112891577	112907758	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051330}  [Source:UniProtKB/TrEMBL;Acc:F6YJR9]
ENSCJAG00000011139	KNOWN_BY_PROJECTION	protein_coding	CPTP	chromosome:C_jacchus3.2.1:7:1:155834243:1	35843235	35844078	D	ceramide-1-phosphate transfer protein [Source:HGNC Symbol;Acc:HGNC:28116]
ENSCJAG00000011121	KNOWN_BY_PROJECTION	protein_coding	TAS1R3	chromosome:C_jacchus3.2.1:7:1:155834243:1	35846816	35850597	D	taste receptor, type 1, member 3 [Source:HGNC Symbol;Acc:HGNC:15661]
ENSCJAG00000001434	KNOWN_BY_PROJECTION	protein_coding	LAS1L	chromosome:C_jacchus3.2.1:X:1:142054208:1	57447299	57472721	R	LAS1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25726]
ENSCJAG00000013961	KNOWN_BY_PROJECTION	protein_coding	IFT27	chromosome:C_jacchus3.2.1:1:1:210400635:1	199116623	199136773	R	intraflagellar transport 27 [Source:HGNC Symbol;Acc:HGNC:18626]
ENSCJAG00000013730	KNOWN_BY_PROJECTION	protein_coding	KRTAP4-3	chromosome:C_jacchus3.2.1:5:1:159171411:1	112929957	113003432	D	keratin associated protein 4-3 [Source:HGNC Symbol;Acc:HGNC:18908]
ENSCJAG00000016096	KNOWN	protein_coding	FBXO33	chromosome:C_jacchus3.2.1:10:1:132174527:1	64068912	64117428	R	F-box only protein 33 {ECO:0000313|EMBL:JAB10547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029636}  [Source:UniProtKB/TrEMBL;Acc:F7HRU1]
ENSCJAG00000008614	NOVEL	pseudogene	ENSCJAG00000008614	scaffold:C_jacchus3.2.1:GL285213.1:1:25509:1	17498	18870	D	<no descrition>
ENSCJAG00000032585	NOVEL	protein_coding	ENSCJAG00000032585	chromosome:C_jacchus3.2.1:7:1:155834243:1	35857456	35858495	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042784}  [Source:UniProtKB/TrEMBL;Acc:F6UGQ6]
ENSCJAG00000016083	KNOWN	protein_coding	LRFN5	chromosome:C_jacchus3.2.1:10:1:132174527:1	66206258	66514081	D	Leucine-rich repeat and fibronectin type-III domain-containing protein 5 {ECO:0000313|EMBL:JAB13535.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029618}  [Source:UniProtKB/TrEMBL;Acc:F7HY61]
ENSCJAG00000001453	KNOWN_BY_PROJECTION	protein_coding	MSN	chromosome:C_jacchus3.2.1:X:1:142054208:1	57467802	57684760	D	moesin [Source:HGNC Symbol;Acc:HGNC:7373]
ENSCJAG00000034618	KNOWN	protein_coding	AURKAIP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	35884317	35885982	R	Aurora kinase A-interacting protein {ECO:0000313|EMBL:JAB15250.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020362}  [Source:UniProtKB/TrEMBL;Acc:F7GKP5]
ENSCJAG00000007147	KNOWN_BY_PROJECTION	protein_coding	FGFR4	chromosome:C_jacchus3.2.1:2:1:204313951:1	62093762	62107075	R	fibroblast growth factor receptor 4 [Source:HGNC Symbol;Acc:HGNC:3691]
ENSCJAG00000009331	NOVEL	pseudogene	ENSCJAG00000009331	chromosome:C_jacchus3.2.1:10:1:132174527:1	67502276	67502508	D	<no descrition>
ENSCJAG00000016080	KNOWN_BY_PROJECTION	protein_coding	FSCB	chromosome:C_jacchus3.2.1:10:1:132174527:1	69027753	69030055	R	fibrous sheath CABYR binding protein [Source:HGNC Symbol;Acc:HGNC:20494]
ENSCJAG00000011043	NOVEL	protein_coding	ENSCJAG00000011043	chromosome:C_jacchus3.2.1:7:1:155834243:1	35892795	35914280	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020398}  [Source:UniProtKB/TrEMBL;Acc:F7FXM5]
ENSCJAG00000016071	KNOWN	protein_coding	C14ORF28	chromosome:C_jacchus3.2.1:10:1:132174527:1	69439867	69449939	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029597}; Uncharacterized protein C14orf28 {ECO:0000313|EMBL:JAB04459.1}  [Source:UniProtKB/TrEMBL;Acc:F7I579]
ENSCJAG00000001459	KNOWN_BY_PROJECTION	protein_coding	VSIG4	chromosome:C_jacchus3.2.1:X:1:142054208:1	57783893	57807112	R	V-set and immunoglobulin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:17032]
ENSCJAG00000016063	KNOWN	protein_coding	KLHL28	chromosome:C_jacchus3.2.1:10:1:132174527:1	69479601	69514892	R	Kelch-like protein 28 {ECO:0000313|EMBL:JAB05387.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029576}  [Source:UniProtKB/TrEMBL;Acc:F7I7K3]
ENSCJAG00000007107	KNOWN_BY_PROJECTION	protein_coding	PRUNE	chromosome:C_jacchus3.2.1:18:1:47448759:1	4981874	5047202	D	prune exopolyphosphatase [Source:HGNC Symbol;Acc:HGNC:13420]
ENSCJAG00000013970	KNOWN	protein_coding	PVALB	chromosome:C_jacchus3.2.1:1:1:210400635:1	199158761	199176545	R	Parvalbumin alpha {ECO:0000313|EMBL:JAB36385.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025693}  [Source:UniProtKB/TrEMBL;Acc:F6ZEB8]
ENSCJAG00000007115	KNOWN_BY_PROJECTION	protein_coding	BNIPL	chromosome:C_jacchus3.2.1:18:1:47448759:1	5014065	5026879	D	BCL2/adenovirus E1B 19kD interacting protein like [Source:HGNC Symbol;Acc:HGNC:16976]
ENSCJAG00000004494	KNOWN	protein_coding	RAD23A	chromosome:C_jacchus3.2.1:22:1:49145316:1	12154151	12161875	D	UV excision repair protein RAD23 homolog A isoform 2 {ECO:0000313|EMBL:JAB09032.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008160}  [Source:UniProtKB/TrEMBL;Acc:F7ISF6]
ENSCJAG00000007125	KNOWN_BY_PROJECTION	protein_coding	C1orf56	chromosome:C_jacchus3.2.1:18:1:47448759:1	5028082	5030893	D	chromosome 1 open reading frame 56 [Source:HGNC Symbol;Acc:HGNC:26045]
ENSCJAG00000007133	NOVEL	protein_coding	CDC42SE1	chromosome:C_jacchus3.2.1:18:1:47448759:1	5031409	5040589	R	CDC42 small effector 1 (Predicted) {ECO:0000313|EMBL:ABY82083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013258}  [Source:UniProtKB/TrEMBL;Acc:B0KWB2]
ENSCJAG00000037270	KNOWN_BY_PROJECTION	protein_coding	MLLT11	chromosome:C_jacchus3.2.1:18:1:47448759:1	5040944	5047692	D	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 [Source:HGNC Symbol;Acc:HGNC:16997]
ENSCJAG00000013982	KNOWN_BY_PROJECTION	protein_coding	NCF4	chromosome:C_jacchus3.2.1:1:1:210400635:1	199212762	199233765	D	neutrophil cytosolic factor 4, 40kDa [Source:HGNC Symbol;Acc:HGNC:7662]
ENSCJAG00000007146	KNOWN_BY_PROJECTION	protein_coding	GABPB2	chromosome:C_jacchus3.2.1:18:1:47448759:1	5059908	5087967	D	GA binding protein transcription factor, beta subunit 2 [Source:HGNC Symbol;Acc:HGNC:28441]
ENSCJAG00000002348	KNOWN_BY_PROJECTION	protein_coding	KRTAP9-2	chromosome:C_jacchus3.2.1:5:1:159171411:1	113016061	113023850	D	keratin associated protein 9-2 [Source:HGNC Symbol;Acc:HGNC:16926]
ENSCJAG00000001552	KNOWN_BY_PROJECTION	protein_coding	GRIK2	chromosome:C_jacchus3.2.1:4:1:171630274:1	100924825	101424206	D	glutamate receptor, ionotropic, kainate 2 [Source:HGNC Symbol;Acc:HGNC:4580]
ENSCJAG00000007124	KNOWN_BY_PROJECTION	protein_coding	CAPN6	chromosome:C_jacchus3.2.1:X:1:142054208:1	99748604	99773594	R	calpain 6 [Source:HGNC Symbol;Acc:HGNC:1483]
ENSCJAG00000037565	KNOWN	protein_coding	MRPL20	chromosome:C_jacchus3.2.1:7:1:155834243:1	35905778	35914308	R	39S ribosomal protein L20, mitochondrial {ECO:0000313|EMBL:JAB03427.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020358}  [Source:UniProtKB/TrEMBL;Acc:F7GRD9]
ENSCJAG00000007330	KNOWN	protein_coding	VPS72	chromosome:C_jacchus3.2.1:18:1:47448759:1	5082592	5164443	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013668}; Vacuolar protein sorting-associated protein 72 homolog isoform 2 {ECO:0000313|EMBL:JAB08689.1}  [Source:UniProtKB/TrEMBL;Acc:F7BGD0]
ENSCJAG00000011035	KNOWN	protein_coding	TMEM88B	chromosome:C_jacchus3.2.1:7:1:155834243:1	35927294	35928913	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020348}  [Source:UniProtKB/TrEMBL;Acc:F7GWG5]
ENSCJAG00000001469	KNOWN_BY_PROJECTION	protein_coding	HEPH	chromosome:C_jacchus3.2.1:X:1:142054208:1	57920009	58056305	D	hephaestin [Source:HGNC Symbol;Acc:HGNC:4866]
ENSCJAG00000011020	KNOWN_BY_PROJECTION	protein_coding	VWA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	35936214	35942019	D	von Willebrand factor A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30910]
ENSCJAG00000033603	NOVEL	pseudogene	ENSCJAG00000033603	chromosome:C_jacchus3.2.1:7:1:155834243:1	35951687	35952162	R	<no descrition>
ENSCJAG00000035260	KNOWN_BY_PROJECTION	protein_coding	KRTAP16-1	chromosome:C_jacchus3.2.1:5:1:159171411:1	113038047	113038742	R	keratin associated protein 16-1 [Source:HGNC Symbol;Acc:HGNC:18916]
ENSCJAG00000004645	KNOWN	protein_coding	GADD45GIP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	12162643	12166008	R	Growth arrest and DNA damage-inducible proteins-interacting protein 1 {ECO:0000313|EMBL:JAB24268.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008405}  [Source:UniProtKB/TrEMBL;Acc:F7IHV3]
ENSCJAG00000032828	NOVEL	protein_coding	ENSCJAG00000032828	chromosome:C_jacchus3.2.1:5:1:159171411:1	113059986	113114702	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052474}  [Source:UniProtKB/TrEMBL;Acc:F7I038]
ENSCJAG00000004639	KNOWN_BY_PROJECTION	protein_coding	DAND5	chromosome:C_jacchus3.2.1:22:1:49145316:1	12178855	12182271	D	DAN domain family member 5, BMP antagonist [Source:HGNC Symbol;Acc:HGNC:26780]
ENSCJAG00000010991	NOVEL	protein_coding	ENSCJAG00000010991	chromosome:C_jacchus3.2.1:7:1:155834243:1	35963199	35990495	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046067}  [Source:UniProtKB/TrEMBL;Acc:F6ZB98]
ENSCJAG00000007101	KNOWN_BY_PROJECTION	protein_coding	DCX	chromosome:C_jacchus3.2.1:X:1:142054208:1	99799546	99922447	R	doublecortin [Source:HGNC Symbol;Acc:HGNC:2714]
ENSCJAG00000004603	KNOWN_BY_PROJECTION	protein_coding	NFIX	chromosome:C_jacchus3.2.1:22:1:49145316:1	12238050	12314921	D	nuclear factor I/X (CCAAT-binding transcription factor) [Source:HGNC Symbol;Acc:HGNC:7788]
ENSCJAG00000002352	NOVEL	protein_coding	ENSCJAG00000002352	chromosome:C_jacchus3.2.1:5:1:159171411:1	113102800	113267366	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004300}  [Source:UniProtKB/TrEMBL;Acc:F7CLI0]
ENSCJAG00000012695	KNOWN_BY_PROJECTION	protein_coding	CSF2RB	chromosome:C_jacchus3.2.1:1:1:210400635:1	199270848	199288199	D	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) [Source:HGNC Symbol;Acc:HGNC:2436]
ENSCJAG00000016027	KNOWN_BY_PROJECTION	protein_coding	FAM179B	chromosome:C_jacchus3.2.1:10:1:132174527:1	69515117	69645182	D	family with sequence similarity 179, member B [Source:HGNC Symbol;Acc:HGNC:19959]
ENSCJAG00000007194	KNOWN	protein_coding	ZNF346	chromosome:C_jacchus3.2.1:2:1:204313951:1	62129157	62188899	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051180}; Zinc finger protein 346 {ECO:0000313|EMBL:JAB07847.1}  [Source:UniProtKB/TrEMBL;Acc:F6Z358]
ENSCJAG00000032037	NOVEL	protein_coding	ENSCJAG00000032037	chromosome:C_jacchus3.2.1:X:1:142054208:1	58209695	58211486	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023332}  [Source:UniProtKB/TrEMBL;Acc:F7I8R3]
ENSCJAG00000037689	KNOWN	protein_coding	TMEM240	chromosome:C_jacchus3.2.1:7:1:155834243:1	35991337	36145775	R	Transmembrane protein 240 {ECO:0000313|EMBL:JAB05914.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048042}  [Source:UniProtKB/TrEMBL;Acc:F7FR21]
ENSCJAG00000012701	KNOWN_BY_PROJECTION	protein_coding	TEX33	chromosome:C_jacchus3.2.1:1:1:210400635:1	199322252	199333501	R	testis expressed 33 [Source:HGNC Symbol;Acc:HGNC:28568]
ENSCJAG00000004598	KNOWN	protein_coding	LYL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	12316286	12316803	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008337}  [Source:UniProtKB/TrEMBL;Acc:F7HWN0]
ENSCJAG00000003590	KNOWN	protein_coding	EDA2R	chromosome:C_jacchus3.2.1:X:1:142054208:1	58251859	58299932	R	Tumor necrosis factor receptor superfamily member 27 isoform 1 {ECO:0000313|EMBL:JAB41218.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006543}  [Source:UniProtKB/TrEMBL;Acc:F7EQV1]
ENSCJAG00000010957	KNOWN_BY_PROJECTION	protein_coding	SSU72	chromosome:C_jacchus3.2.1:7:1:155834243:1	35997975	36028992	R	SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25016]
ENSCJAG00000007095	NOVEL	protein_coding	ENSCJAG00000007095	chromosome:C_jacchus3.2.1:X:1:142054208:1	99946414	99947008	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013165}  [Source:UniProtKB/TrEMBL;Acc:F6UBD6]
ENSCJAG00000010956	NOVEL	pseudogene	ENSCJAG00000010956	chromosome:C_jacchus3.2.1:7:1:155834243:1	36029438	36029567	D	<no descrition>
ENSCJAG00000010955	NOVEL	pseudogene	ENSCJAG00000010955	chromosome:C_jacchus3.2.1:7:1:155834243:1	36044994	36045465	R	<no descrition>
ENSCJAG00000007093	KNOWN_BY_PROJECTION	protein_coding	TUBB	chromosome:C_jacchus3.2.1:X:1:142054208:1	100083749	100120722	R	tubulin, beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
ENSCJAG00000004566	KNOWN_BY_PROJECTION	protein_coding	TRMT1	chromosome:C_jacchus3.2.1:22:1:49145316:1	12321993	12334766	R	tRNA methyltransferase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25980]
ENSCJAG00000012707	KNOWN_BY_PROJECTION	protein_coding	KCTD17	chromosome:C_jacchus3.2.1:1:1:210400635:1	199371912	199388952	D	potassium channel tetramerization domain containing 17 [Source:HGNC Symbol;Acc:HGNC:25705]
ENSCJAG00000003563	KNOWN	protein_coding	AR	chromosome:C_jacchus3.2.1:X:1:142054208:1	59122998	59336446	D	Androgen receptor variant {ECO:0000313|EMBL:ADH04800.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006497}  [Source:UniProtKB/TrEMBL;Acc:D8V0F0]
ENSCJAG00000007159	KNOWN	protein_coding	SEMA6C	chromosome:C_jacchus3.2.1:18:1:47448759:1	5099636	5114670	R	Semaphorin-6C isoform 2 {ECO:0000313|EMBL:JAB03011.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013515}  [Source:UniProtKB/TrEMBL;Acc:F6ZY72]
ENSCJAG00000007056	KNOWN	protein_coding	ALG13	chromosome:C_jacchus3.2.1:X:1:142054208:1	100182756	100258831	D	UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform 2 {ECO:0000313|EMBL:JAB11583.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013097}  [Source:UniProtKB/TrEMBL;Acc:F6YIZ0]
ENSCJAG00000001702	KNOWN	protein_coding	OPHN1	chromosome:C_jacchus3.2.1:X:1:142054208:1	59758282	60206526	R	Oligophrenin-1 {ECO:0000313|EMBL:JAB11024.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003119}  [Source:UniProtKB/TrEMBL;Acc:F7DWJ5]
ENSCJAG00000015991	KNOWN	protein_coding	PRPF39	chromosome:C_jacchus3.2.1:10:1:132174527:1	69656910	69688994	D	Pre-mRNA-processing factor 39 {ECO:0000313|EMBL:JAB20068.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029474}  [Source:UniProtKB/TrEMBL;Acc:F7IP73]
ENSCJAG00000033261	NOVEL	pseudogene	ENSCJAG00000033261	chromosome:C_jacchus3.2.1:X:1:142054208:1	59792170	59792780	R	<no descrition>
ENSCJAG00000001748	KNOWN	protein_coding	YIPF6	chromosome:C_jacchus3.2.1:X:1:142054208:1	60257298	60291008	D	Protein YIPF6 isoform A {ECO:0000313|EMBL:JAB15498.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003133}  [Source:UniProtKB/TrEMBL;Acc:F7DW70]
ENSCJAG00000036424	NOVEL	protein_coding	ENSCJAG00000036424	chromosome:C_jacchus3.2.1:5:1:159171411:1	113106786	113114702	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052397}  [Source:UniProtKB/TrEMBL;Acc:F7ILB1]
ENSCJAG00000004562	KNOWN_BY_PROJECTION	protein_coding	NACC1	chromosome:C_jacchus3.2.1:22:1:49145316:1	12357923	12361729	D	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing [Source:HGNC Symbol;Acc:HGNC:20967]
ENSCJAG00000032322	NOVEL	protein_coding	ENSCJAG00000032322	chromosome:C_jacchus3.2.1:5:1:159171411:1	113141454	113162835	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004267}  [Source:UniProtKB/TrEMBL;Acc:F6XGW1]
ENSCJAG00000037849	KNOWN_BY_PROJECTION	protein_coding	KRT32	chromosome:C_jacchus3.2.1:5:1:159171411:1	113205730	113209910	R	keratin 32 [Source:HGNC Symbol;Acc:HGNC:6449]
ENSCJAG00000004519	KNOWN	protein_coding	STX10	chromosome:C_jacchus3.2.1:22:1:49145316:1	12366338	12370575	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008244}  [Source:UniProtKB/TrEMBL;Acc:F7ID74]
ENSCJAG00000035034	KNOWN_BY_PROJECTION	protein_coding	KRT35	chromosome:C_jacchus3.2.1:5:1:159171411:1	113218083	113222492	R	keratin 35 [Source:HGNC Symbol;Acc:HGNC:6453]
ENSCJAG00000007106	KNOWN_BY_PROJECTION	protein_coding	UIMC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	62218239	62376231	D	ubiquitin interaction motif containing 1 [Source:HGNC Symbol;Acc:HGNC:30298]
ENSCJAG00000001753	KNOWN_BY_PROJECTION	protein_coding	STARD8	chromosome:C_jacchus3.2.1:X:1:142054208:1	60395043	60476921	D	StAR-related lipid transfer (START) domain containing 8 [Source:HGNC Symbol;Acc:HGNC:19161]
ENSCJAG00000002389	KNOWN_BY_PROJECTION	protein_coding	KRT36	chromosome:C_jacchus3.2.1:5:1:159171411:1	113227449	113235404	R	keratin 36 [Source:HGNC Symbol;Acc:HGNC:6454]
ENSCJAG00000001595	NOVEL	pseudogene	ENSCJAG00000001595	chromosome:C_jacchus3.2.1:4:1:171630274:1	102944933	102945954	D	<no descrition>
ENSCJAG00000033409	NOVEL	protein_coding	ENSCJAG00000033409	chromosome:C_jacchus3.2.1:4:1:171630274:1	102958389	102959560	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011660}  [Source:UniProtKB/TrEMBL;Acc:F7HD98]
ENSCJAG00000010931	KNOWN_BY_PROJECTION	protein_coding	MIB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	36070802	36085998	D	mindbomb E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:30577]
ENSCJAG00000031858	NOVEL	pseudogene	ENSCJAG00000031858	chromosome:C_jacchus3.2.1:2:1:204313951:1	62247464	62247934	R	<no descrition>
ENSCJAG00000002399	KNOWN_BY_PROJECTION	protein_coding	KRT13	chromosome:C_jacchus3.2.1:5:1:159171411:1	113245033	113249905	R	keratin 13 [Source:HGNC Symbol;Acc:HGNC:6415]
ENSCJAG00000007223	KNOWN_BY_PROJECTION	protein_coding	HK3	chromosome:C_jacchus3.2.1:2:1:204313951:1	62383188	62401569	D	hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
ENSCJAG00000012586	KNOWN	protein_coding	EFNB1	chromosome:C_jacchus3.2.1:X:1:142054208:1	60583773	60595987	D	Ephrin-B1 {ECO:0000313|EMBL:JAB09321.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023051}  [Source:UniProtKB/TrEMBL;Acc:F7IDP5]
ENSCJAG00000012576	KNOWN_BY_PROJECTION	protein_coding	PJA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	60929331	60931870	R	praja ring finger 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:16648]
ENSCJAG00000023412	KNOWN	protein_coding	TNFAIP8L2	chromosome:C_jacchus3.2.1:18:1:47448759:1	5128572	5131766	D	Tumor necrosis factor alpha-induced protein 8-like protein 2  [Source:UniProtKB/Swiss-Prot;Acc:B0KWC3]
ENSCJAG00000001597	KNOWN	protein_coding	HACE1	chromosome:C_jacchus3.2.1:4:1:171630274:1	104106068	104208859	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002963}  [Source:UniProtKB/TrEMBL;Acc:F7HUT8]
ENSCJAG00000012571	KNOWN_BY_PROJECTION	protein_coding	FAM155B	chromosome:C_jacchus3.2.1:X:1:142054208:1	61365293	61392985	D	family with sequence similarity 155, member B [Source:HGNC Symbol;Acc:HGNC:30701]
ENSCJAG00000007263	KNOWN	protein_coding	LYSMD1	chromosome:C_jacchus3.2.1:18:1:47448759:1	5131766	5139529	R	LysM and putative peptidoglycan-binding domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB09205.1}; LysM, putative peptidoglycan-binding, domain containing 1 (Predicted) {ECO:0000313|EMBL:ABY82086.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013546}  [Source:UniProtKB/TrEMBL;Acc:B0KWB4]
ENSCJAG00000012562	KNOWN_BY_PROJECTION	protein_coding	EDA	chromosome:C_jacchus3.2.1:X:1:142054208:1	61861497	61953942	D	ectodysplasin A [Source:HGNC Symbol;Acc:HGNC:3157]
ENSCJAG00000007277	KNOWN	protein_coding	SCNM1	chromosome:C_jacchus3.2.1:18:1:47448759:1	5139710	5144827	D	Sodium channel modifier 1 (Predicted) {ECO:0000313|EMBL:ABY82087.1}; Sodium channel modifier 1 isoform 1 {ECO:0000313|EMBL:JAB14906.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013580}  [Source:UniProtKB/TrEMBL;Acc:B0KWB5]
ENSCJAG00000012549	KNOWN_BY_PROJECTION	protein_coding	AWAT2	chromosome:C_jacchus3.2.1:X:1:142054208:1	61959978	61968011	R	acyl-CoA wax alcohol acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:23251]
ENSCJAG00000012545	KNOWN_BY_PROJECTION	protein_coding	OTUD6A	chromosome:C_jacchus3.2.1:X:1:142054208:1	61981386	61982420	D	OTU deubiquitinase 6A [Source:HGNC Symbol;Acc:HGNC:32312]
ENSCJAG00000007053	KNOWN_BY_PROJECTION	protein_coding	TRPC5	chromosome:C_jacchus3.2.1:X:1:142054208:1	100275068	100441073	R	transient receptor potential cation channel, subfamily C, member 5 [Source:HGNC Symbol;Acc:HGNC:12337]
ENSCJAG00000012525	NOVEL	protein_coding	ENSCJAG00000012525	chromosome:C_jacchus3.2.1:X:1:142054208:1	62075798	62108537	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022947}  [Source:UniProtKB/TrEMBL;Acc:F7ICW4]
ENSCJAG00000007047	KNOWN_BY_PROJECTION	protein_coding	LHFPL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	101081537	101128980	R	lipoma HMGIC fusion partner-like 1 [Source:HGNC Symbol;Acc:HGNC:6587]
ENSCJAG00000007044	NOVEL	protein_coding	ENSCJAG00000007044	chromosome:C_jacchus3.2.1:X:1:142054208:1	101143250	101143772	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013065}  [Source:UniProtKB/TrEMBL;Acc:F6ZJV1]
ENSCJAG00000002417	KNOWN_BY_PROJECTION	protein_coding	KRT9	chromosome:C_jacchus3.2.1:5:1:159171411:1	113258429	113410195	R	keratin 9 [Source:HGNC Symbol;Acc:HGNC:6447]
ENSCJAG00000012517	KNOWN_BY_PROJECTION	protein_coding	DGAT2L6	chromosome:C_jacchus3.2.1:X:1:142054208:1	62120404	62148116	D	diacylglycerol O-acyltransferase 2-like 6 [Source:HGNC Symbol;Acc:HGNC:23250]
ENSCJAG00000032564	KNOWN_BY_PROJECTION	protein_coding	AWAT1	chromosome:C_jacchus3.2.1:X:1:142054208:1	62167724	62174186	D	acyl-CoA wax alcohol acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23252]
ENSCJAG00000007004	KNOWN_BY_PROJECTION	protein_coding	AMOT	chromosome:C_jacchus3.2.1:X:1:142054208:1	101244318	101310035	R	angiomotin [Source:HGNC Symbol;Acc:HGNC:17810]
ENSCJAG00000012513	NOVEL	pseudogene	ENSCJAG00000012513	chromosome:C_jacchus3.2.1:X:1:142054208:1	62199989	62201633	R	<no descrition>
ENSCJAG00000004458	KNOWN_BY_PROJECTION	protein_coding	CACNA1A	chromosome:C_jacchus3.2.1:22:1:49145316:1	12417150	12596233	R	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit [Source:HGNC Symbol;Acc:HGNC:1388]
ENSCJAG00000012718	KNOWN_BY_PROJECTION	protein_coding	TMPRSS6	chromosome:C_jacchus3.2.1:1:1:210400635:1	199392580	199418703	R	transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
ENSCJAG00000002133	KNOWN_BY_PROJECTION	protein_coding	IL2RB	chromosome:C_jacchus3.2.1:1:1:210400635:1	199441437	199460825	R	interleukin 2 receptor, beta [Source:HGNC Symbol;Acc:HGNC:6009]
ENSCJAG00000007237	KNOWN	protein_coding	UNC5A	chromosome:C_jacchus3.2.1:2:1:204313951:1	62401545	62468834	R	Netrin receptor UNC5A {ECO:0000313|EMBL:JAB18896.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013540}  [Source:UniProtKB/TrEMBL;Acc:F6ZFA6]
ENSCJAG00000002140	KNOWN_BY_PROJECTION	protein_coding	C1QTNF6	chromosome:C_jacchus3.2.1:1:1:210400635:1	199498921	199505714	R	C1q and tumor necrosis factor related protein 6 [Source:HGNC Symbol;Acc:HGNC:14343]
ENSCJAG00000007296	KNOWN	protein_coding	TMOD4	chromosome:C_jacchus3.2.1:18:1:47448759:1	5145354	5150935	R	Tropomodulin 4 (Predicted) {ECO:0000313|EMBL:ABY82088.1}; Tropomodulin-4 {ECO:0000313|EMBL:JAB41679.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013641}  [Source:UniProtKB/TrEMBL;Acc:B0KWB6]
ENSCJAG00000002142	KNOWN	protein_coding	SSTR3	chromosome:C_jacchus3.2.1:1:1:210400635:1	199503149	199531827	R	Somatostatin receptor type 3 {ECO:0000313|EMBL:JAB24201.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051990}  [Source:UniProtKB/TrEMBL;Acc:F6YVY1]
ENSCJAG00000002144	KNOWN_BY_PROJECTION	protein_coding	RAC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	199548757	199566650	R	ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:HGNC:9802]
ENSCJAG00000012455	KNOWN_BY_PROJECTION	protein_coding	ARR3	chromosome:C_jacchus3.2.1:X:1:142054208:1	62211621	62223512	D	arrestin 3, retinal (X-arrestin) [Source:HGNC Symbol;Acc:HGNC:710]
ENSCJAG00000007002	NOVEL	pseudogene	ENSCJAG00000007002	chromosome:C_jacchus3.2.1:X:1:142054208:1	102958775	102959360	R	<no descrition>
ENSCJAG00000015972	KNOWN	protein_coding	FKBP3	chromosome:C_jacchus3.2.1:10:1:132174527:1	69688995	69707268	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}  [Source:UniProtKB/TrEMBL;Acc:F7HVZ6]
ENSCJAG00000011090	KNOWN_BY_PROJECTION	protein_coding	CYTH4	chromosome:C_jacchus3.2.1:1:1:210400635:1	199618145	199649084	D	cytohesin 4 [Source:HGNC Symbol;Acc:HGNC:9505]
ENSCJAG00000006967	KNOWN_BY_PROJECTION	protein_coding	HTR2C	chromosome:C_jacchus3.2.1:X:1:142054208:1	103028945	103322890	D	5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled [Source:HGNC Symbol;Acc:HGNC:5295]
ENSCJAG00000012441	KNOWN_BY_PROJECTION	protein_coding	RAB41	chromosome:C_jacchus3.2.1:X:1:142054208:1	62223842	62226450	D	RAB41, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18293]
ENSCJAG00000007274	NOVEL	protein_coding	ENSCJAG00000007274	chromosome:C_jacchus3.2.1:2:1:204313951:1	62530964	62531906	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013547}  [Source:UniProtKB/TrEMBL;Acc:F6ZF57]
ENSCJAG00000007278	KNOWN_BY_PROJECTION	protein_coding	TSPAN17	chromosome:C_jacchus3.2.1:2:1:204313951:1	62635951	62646267	R	tetraspanin 17 [Source:HGNC Symbol;Acc:HGNC:13594]
ENSCJAG00000015945	KNOWN_BY_PROJECTION	protein_coding	FANCM	chromosome:C_jacchus3.2.1:10:1:132174527:1	69709013	69786193	D	Fanconi anemia, complementation group M [Source:HGNC Symbol;Acc:HGNC:23168]
ENSCJAG00000007291	KNOWN_BY_PROJECTION	protein_coding	EIF4E1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	62647953	62650822	R	eukaryotic translation initiation factor 4E family member 1B [Source:HGNC Symbol;Acc:HGNC:33179]
ENSCJAG00000015996	KNOWN	protein_coding	MFNG	chromosome:C_jacchus3.2.1:1:1:210400635:1	199798955	199823048	R	Beta-1,3-N-acetylglucosaminyltransferase manic fringe isoform 1 {ECO:0000313|EMBL:JAB19785.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029449}  [Source:UniProtKB/TrEMBL;Acc:F7HLF8]
ENSCJAG00000006980	NOVEL	protein_coding	ENSCJAG00000006980	chromosome:C_jacchus3.2.1:X:1:142054208:1	103183731	103185647	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012959}  [Source:UniProtKB/TrEMBL;Acc:F6REE3]
ENSCJAG00000012432	KNOWN	protein_coding	PDZD11	chromosome:C_jacchus3.2.1:X:1:142054208:1	62227827	62231729	R	PDZ domain-containing protein 11 {ECO:0000313|EMBL:JAB01799.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048728}  [Source:UniProtKB/TrEMBL;Acc:F6QWC8]
ENSCJAG00000007301	KNOWN	protein_coding	SNCB	chromosome:C_jacchus3.2.1:2:1:204313951:1	62666066	62676464	D	Beta-synuclein {ECO:0000313|EMBL:JAB02293.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021332}  [Source:UniProtKB/TrEMBL;Acc:F6PK97]
ENSCJAG00000007344	KNOWN	protein_coding	PIP5K1A	chromosome:C_jacchus3.2.1:18:1:47448759:1	5175196	5225519	D	Phosphatidylinositol-4-phosphate 5-kinase, type I, alpha (Predicted) {ECO:0000313|EMBL:ABY82090.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045948}  [Source:UniProtKB/TrEMBL;Acc:B0KWB8]
ENSCJAG00000015566	KNOWN_BY_PROJECTION	protein_coding	KIF4A	chromosome:C_jacchus3.2.1:X:1:142054208:1	62231838	62349188	D	kinesin family member 4A [Source:HGNC Symbol;Acc:HGNC:13339]
ENSCJAG00000006949	KNOWN_BY_PROJECTION	protein_coding	IL13RA2	chromosome:C_jacchus3.2.1:X:1:142054208:1	103410903	103425311	R	interleukin 13 receptor, alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]
ENSCJAG00000000530	KNOWN_BY_PROJECTION	protein_coding	CARD10	chromosome:C_jacchus3.2.1:1:1:210400635:1	199828622	199860980	R	caspase recruitment domain family, member 10 [Source:HGNC Symbol;Acc:HGNC:16422]
ENSCJAG00000015543	KNOWN_BY_PROJECTION	protein_coding	GDPD2	chromosome:C_jacchus3.2.1:X:1:142054208:1	62367680	62377680	D	glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
ENSCJAG00000004443	KNOWN	protein_coding	CCDC130	chromosome:C_jacchus3.2.1:22:1:49145316:1	12979950	13004491	D	Coiled-coil domain-containing protein 130 {ECO:0000313|EMBL:JAB02426.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008056}  [Source:UniProtKB/TrEMBL;Acc:F6Z9F1]
ENSCJAG00000007308	KNOWN	protein_coding	GPRIN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	62686199	62702249	D	G protein-regulated inducer of neurite outgrowth 1 {ECO:0000313|EMBL:JAB20566.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013609}  [Source:UniProtKB/TrEMBL;Acc:F7CTE5]
ENSCJAG00000010920	KNOWN_BY_PROJECTION	protein_coding	MMP23B	chromosome:C_jacchus3.2.1:7:1:155834243:1	36088209	36090635	D	matrix metallopeptidase 23B [Source:HGNC Symbol;Acc:HGNC:7171]
ENSCJAG00000004436	KNOWN_BY_PROJECTION	protein_coding	MRI1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13005638	13010003	D	methylthioribose-1-phosphate isomerase 1 [Source:HGNC Symbol;Acc:HGNC:28469]
ENSCJAG00000004427	KNOWN	protein_coding	ENSCJAG00000004427	chromosome:C_jacchus3.2.1:22:1:49145316:1	13011751	13014042	D	Leydig cell tumor 10 kDa protein homolog {ECO:0000313|EMBL:JAB12490.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008013}  [Source:UniProtKB/TrEMBL;Acc:F7AA03]
ENSCJAG00000007310	KNOWN_BY_PROJECTION	protein_coding	CDHR2	chromosome:C_jacchus3.2.1:2:1:204313951:1	62702286	62751605	R	cadherin-related family member 2 [Source:HGNC Symbol;Acc:HGNC:18231]
ENSCJAG00000004397	NOVEL	protein_coding	ENSCJAG00000004397	chromosome:C_jacchus3.2.1:22:1:49145316:1	13028148	13063539	D	<no descrition>
ENSCJAG00000029756	KNOWN	protein_coding	KRT19	chromosome:C_jacchus3.2.1:5:1:159171411:1	113268135	113273903	R	Keratin, type I cytoskeletal 19 {ECO:0000313|EMBL:JAB17710.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004364}  [Source:UniProtKB/TrEMBL;Acc:F7BQD8]
ENSCJAG00000000527	KNOWN_BY_PROJECTION	protein_coding	CDC42EP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	199905461	199914442	D	CDC42 effector protein (Rho GTPase binding) 1 [Source:HGNC Symbol;Acc:HGNC:17014]
ENSCJAG00000033167	NOVEL	protein_coding	ENSCJAG00000033167	chromosome:C_jacchus3.2.1:4:1:171630274:1	104298585	104298931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050626}  [Source:UniProtKB/TrEMBL;Acc:F7GY97]
ENSCJAG00000001671	KNOWN_BY_PROJECTION	protein_coding	LIN28B	chromosome:C_jacchus3.2.1:4:1:171630274:1	104315656	104463606	D	lin-28 homolog B (C. elegans) [Source:HGNC Symbol;Acc:HGNC:32207]
ENSCJAG00000000521	KNOWN_BY_PROJECTION	protein_coding	LGALS2	chromosome:C_jacchus3.2.1:1:1:210400635:1	199915297	199921048	R	lectin, galactoside-binding, soluble, 2 [Source:HGNC Symbol;Acc:HGNC:6562]
ENSCJAG00000007338	KNOWN_BY_PROJECTION	protein_coding	RNF44	chromosome:C_jacchus3.2.1:2:1:204313951:1	62756010	62764744	D	ring finger protein 44 [Source:HGNC Symbol;Acc:HGNC:19180]
ENSCJAG00000004388	KNOWN_BY_PROJECTION	protein_coding	NANOS3	chromosome:C_jacchus3.2.1:22:1:49145316:1	13114678	13117392	D	nanos homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22048]
ENSCJAG00000004372	KNOWN_BY_PROJECTION	protein_coding	C19orf57	chromosome:C_jacchus3.2.1:22:1:49145316:1	13119509	13144280	R	chromosome 19 open reading frame 57 [Source:HGNC Symbol;Acc:HGNC:28153]
ENSCJAG00000000513	KNOWN_BY_PROJECTION	protein_coding	GGA1	chromosome:C_jacchus3.2.1:1:1:210400635:1	199945957	199968336	D	golgi-associated, gamma adaptin ear containing, ARF binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17842]
ENSCJAG00000037508	KNOWN_BY_PROJECTION	protein_coding	KRT17	chromosome:C_jacchus3.2.1:5:1:159171411:1	113377745	113382866	R	keratin 17 [Source:HGNC Symbol;Acc:HGNC:6427]
ENSCJAG00000001683	KNOWN	protein_coding	BVES	chromosome:C_jacchus3.2.1:4:1:171630274:1	104483550	104529210	R	Blood vessel epicardial substance {ECO:0000313|EMBL:JAB02771.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003028}  [Source:UniProtKB/TrEMBL;Acc:F7GPZ8]
ENSCJAG00000015453	KNOWN	protein_coding	DLG3	chromosome:C_jacchus3.2.1:X:1:142054208:1	62389309	62451759	D	Disks large homolog 3 isoform b {ECO:0000313|EMBL:JAB07988.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028524}  [Source:UniProtKB/TrEMBL;Acc:F7B6J8]
ENSCJAG00000006875	KNOWN_BY_PROJECTION	protein_coding	LRCH2	chromosome:C_jacchus3.2.1:X:1:142054208:1	103551266	103668142	R	leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29292]
ENSCJAG00000004333	KNOWN_BY_PROJECTION	protein_coding	CC2D1A	chromosome:C_jacchus3.2.1:22:1:49145316:1	13150385	13163699	D	coiled-coil and C2 domain containing 1A [Source:HGNC Symbol;Acc:HGNC:30237]
ENSCJAG00000015071	NOVEL	protein_coding	ENSCJAG00000015071	chromosome:C_jacchus3.2.1:5:1:159171411:1	113412408	113414541	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027773}  [Source:UniProtKB/TrEMBL;Acc:F7HES8]
ENSCJAG00000007367	KNOWN_BY_PROJECTION	protein_coding	FAF2	chromosome:C_jacchus3.2.1:2:1:204313951:1	62786582	62815775	R	Fas associated factor family member 2 [Source:HGNC Symbol;Acc:HGNC:24666]
ENSCJAG00000015929	KNOWN_BY_PROJECTION	protein_coding	MIS18BP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	69791788	69863159	R	MIS18 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:20190]
ENSCJAG00000035102	NOVEL	pseudogene	ENSCJAG00000035102	chromosome:C_jacchus3.2.1:2:1:204313951:1	62906876	62907376	R	<no descrition>
ENSCJAG00000007357	KNOWN	protein_coding	PSMD4	chromosome:C_jacchus3.2.1:18:1:47448759:1	5229955	5240245	D	26S proteasome non-ATPase regulatory subunit 4 {ECO:0000313|EMBL:JAB42438.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013792}  [Source:UniProtKB/TrEMBL;Acc:F6VCY1]
ENSCJAG00000015450	NOVEL	pseudogene	ENSCJAG00000015450	chromosome:C_jacchus3.2.1:X:1:142054208:1	62467802	62468763	R	<no descrition>
ENSCJAG00000012354	KNOWN_BY_PROJECTION	protein_coding	SIMC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	62964934	63043046	D	SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
ENSCJAG00000010900	NOVEL	protein_coding	ENSCJAG00000010900	chromosome:C_jacchus3.2.1:7:1:155834243:1	36091664	36123185	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020125}  [Source:UniProtKB/TrEMBL;Acc:F7GRR0]
ENSCJAG00000015068	KNOWN_BY_PROJECTION	protein_coding	KLHL11	chromosome:C_jacchus3.2.1:5:1:159171411:1	113431795	113443236	R	kelch-like family member 11 [Source:HGNC Symbol;Acc:HGNC:19008]
ENSCJAG00000008159	KNOWN_BY_PROJECTION	protein_coding	TEX11	chromosome:C_jacchus3.2.1:X:1:142054208:1	62472009	62791331	R	testis expressed 11 [Source:HGNC Symbol;Acc:HGNC:11733]
ENSCJAG00000006948	NOVEL	protein_coding	ENSCJAG00000006948	chromosome:C_jacchus3.2.1:X:1:142054208:1	103625909	103628901	D	<no descrition>
ENSCJAG00000001968	KNOWN_BY_PROJECTION	protein_coding	LUZP4	chromosome:C_jacchus3.2.1:X:1:142054208:1	103729509	103765502	D	leucine zipper protein 4 [Source:HGNC Symbol;Acc:HGNC:24971]
ENSCJAG00000004297	KNOWN_BY_PROJECTION	protein_coding	PODNL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13166573	13188132	R	podocan-like 1 [Source:HGNC Symbol;Acc:HGNC:26275]
ENSCJAG00000012376	NOVEL	protein_coding	ENSCJAG00000012376	chromosome:C_jacchus3.2.1:2:1:204313951:1	63030221	63030656	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022660}  [Source:UniProtKB/TrEMBL;Acc:F7ISA3]
ENSCJAG00000008152	NOVEL	pseudogene	ENSCJAG00000008152	chromosome:C_jacchus3.2.1:X:1:142054208:1	62755360	62756099	D	<no descrition>
ENSCJAG00000012337	KNOWN	protein_coding	KIAA1191	chromosome:C_jacchus3.2.1:2:1:204313951:1	63044585	63059848	R	Putative monooxygenase p33MONOX isoform a {ECO:0000313|EMBL:JAB05652.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022611}  [Source:UniProtKB/TrEMBL;Acc:F7HYZ4]
ENSCJAG00000013431	KNOWN_BY_PROJECTION	protein_coding	SLC7A3	chromosome:C_jacchus3.2.1:X:1:142054208:1	62821843	62827385	R	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 [Source:HGNC Symbol;Acc:HGNC:11061]
ENSCJAG00000001696	NOVEL	protein_coding	ENSCJAG00000001696	chromosome:C_jacchus3.2.1:4:1:171630274:1	104530752	104562061	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003037}  [Source:UniProtKB/TrEMBL;Acc:F7GID0]
ENSCJAG00000001700	KNOWN_BY_PROJECTION	protein_coding	POPDC3	chromosome:C_jacchus3.2.1:4:1:171630274:1	104551769	104574499	R	popeye domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17649]
ENSCJAG00000013683	NOVEL	pseudogene	ENSCJAG00000013683	chromosome:C_jacchus3.2.1:X:1:142054208:1	62899496	62899877	R	<no descrition>
ENSCJAG00000031694	KNOWN_BY_PROJECTION	protein_coding	SH3BP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	199975588	199983163	D	SH3-domain binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10824]
ENSCJAG00000013662	KNOWN	protein_coding	SNX12	chromosome:C_jacchus3.2.1:X:1:142054208:1	62932955	62951266	R	Sorting nexin-12 isoform 1 {ECO:0000313|EMBL:JAB01710.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025160}  [Source:UniProtKB/TrEMBL;Acc:F7C0P1]
ENSCJAG00000001710	KNOWN_BY_PROJECTION	protein_coding	PREP	chromosome:C_jacchus3.2.1:4:1:171630274:1	104693404	104815246	R	prolyl endopeptidase [Source:HGNC Symbol;Acc:HGNC:9358]
ENSCJAG00000012537	KNOWN_BY_PROJECTION	protein_coding	CBX7	chromosome:C_jacchus3.2.1:1:1:210400635:1	200005456	200029229	D	chromobox homolog 7 [Source:HGNC Symbol;Acc:HGNC:1557]
ENSCJAG00000014988	KNOWN	protein_coding	ACLY	chromosome:C_jacchus3.2.1:5:1:159171411:1	113444227	113607834	R	ATP-citrate synthase isoform 1 {ECO:0000313|EMBL:JAB15541.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027756}  [Source:UniProtKB/TrEMBL;Acc:F7DBY4]
ENSCJAG00000013651	KNOWN_BY_PROJECTION	protein_coding	FOXO4	chromosome:C_jacchus3.2.1:X:1:142054208:1	62979443	62986915	D	forkhead box O4 [Source:HGNC Symbol;Acc:HGNC:7139]
ENSCJAG00000012524	KNOWN_BY_PROJECTION	protein_coding	APOBEC3H	chromosome:C_jacchus3.2.1:1:1:210400635:1	200052339	200056602	R	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H [Source:HGNC Symbol;Acc:HGNC:24100]
ENSCJAG00000035416	NOVEL	protein_coding	ENSCJAG00000035416	chromosome:C_jacchus3.2.1:1:1:210400635:1	200064883	200066141	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050233}  [Source:UniProtKB/TrEMBL;Acc:F7FC36]
ENSCJAG00000035170	KNOWN_BY_PROJECTION	protein_coding	CXorf65	chromosome:C_jacchus3.2.1:X:1:142054208:1	62987361	62990211	R	chromosome X open reading frame 65 [Source:HGNC Symbol;Acc:HGNC:33713]
ENSCJAG00000012519	KNOWN	protein_coding	PDXP	chromosome:C_jacchus3.2.1:1:1:210400635:1	200076310	200087318	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022915}  [Source:UniProtKB/TrEMBL;Acc:F7IHM5]
ENSCJAG00000012500	NOVEL	protein_coding	ENSCJAG00000012500	chromosome:C_jacchus3.2.1:1:1:210400635:1	200097458	200103163	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022907}  [Source:UniProtKB/TrEMBL;Acc:F7IHP6]
ENSCJAG00000013631	KNOWN	protein_coding	IL2RG	chromosome:C_jacchus3.2.1:X:1:142054208:1	62991059	62995781	R	Cytokine receptor common subunit gamma {ECO:0000313|EMBL:JAB01832.1}; Interleukin 2 receptor gamma {ECO:0000313|EMBL:ABQ09492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025096}  [Source:UniProtKB/TrEMBL;Acc:A5HJL6]
ENSCJAG00000005014	KNOWN_BY_PROJECTION	protein_coding	DCAF15	chromosome:C_jacchus3.2.1:22:1:49145316:1	13187213	13195170	D	DDB1 and CUL4 associated factor 15 [Source:HGNC Symbol;Acc:HGNC:25095]
ENSCJAG00000012424	KNOWN	protein_coding	H1F0	chromosome:C_jacchus3.2.1:1:1:210400635:1	200102123	200247636	D	Histone H1.0 {ECO:0000313|EMBL:JAB07972.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022759}  [Source:UniProtKB/TrEMBL;Acc:F7IAQ5]
ENSCJAG00000012495	KNOWN	protein_coding	LGALS1	chromosome:C_jacchus3.2.1:1:1:210400635:1	200110264	200114499	D	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F7IS09]
ENSCJAG00000004970	KNOWN_BY_PROJECTION	protein_coding	RFX1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13197840	13230851	R	regulatory factor X, 1 (influences HLA class II expression) [Source:HGNC Symbol;Acc:HGNC:9982]
ENSCJAG00000001982	NOVEL	protein_coding	ENSCJAG00000001982	chromosome:C_jacchus3.2.1:X:1:142054208:1	104004203	104099207	D	<no descrition>
ENSCJAG00000033038	NOVEL	protein_coding	ENSCJAG00000033038	chromosome:C_jacchus3.2.1:22:1:49145316:1	13252403	13254063	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047447}  [Source:UniProtKB/TrEMBL;Acc:F7II26]
ENSCJAG00000031577	NOVEL	protein_coding	ENSCJAG00000031577	chromosome:C_jacchus3.2.1:22:1:49145316:1	13256844	13263978	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012570}  [Source:UniProtKB/TrEMBL;Acc:F7GMB1]
ENSCJAG00000034412	KNOWN	protein_coding	ENSCJAG00000034412	chromosome:C_jacchus3.2.1:10:1:132174527:1	70431478	70433242	R	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7G6P0]
ENSCJAG00000012487	KNOWN	protein_coding	NOL12	chromosome:C_jacchus3.2.1:1:1:210400635:1	200117542	200133259	D	Nucleolar protein 12 {ECO:0000313|EMBL:JAB06369.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022854}  [Source:UniProtKB/TrEMBL;Acc:F7HMQ2]
ENSCJAG00000004965	KNOWN_BY_PROJECTION	protein_coding	RLN3	chromosome:C_jacchus3.2.1:22:1:49145316:1	13265129	13268613	D	relaxin 3 [Source:HGNC Symbol;Acc:HGNC:17135]
ENSCJAG00000033395	KNOWN	protein_coding	ZNF687	chromosome:C_jacchus3.2.1:18:1:47448759:1	5260658	5269695	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013842}; Zinc finger protein 687 {ECO:0000313|EMBL:JAB09639.1}; Zinc finger protein 687 (Predicted) {ECO:0000313|EMBL:ABY82092.1}  [Source:UniProtKB/TrEMBL;Acc:B0KWC0]
ENSCJAG00000004940	KNOWN_BY_PROJECTION	protein_coding	IL27RA	chromosome:C_jacchus3.2.1:22:1:49145316:1	13268988	13292718	D	interleukin 27 receptor, alpha [Source:HGNC Symbol;Acc:HGNC:17290]
ENSCJAG00000012492	NOVEL	protein_coding	ENSCJAG00000012492	chromosome:C_jacchus3.2.1:1:1:210400635:1	200123264	200126209	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022860}  [Source:UniProtKB/TrEMBL;Acc:F7IS50]
ENSCJAG00000013584	KNOWN_BY_PROJECTION	protein_coding	MED12	chromosome:C_jacchus3.2.1:X:1:142054208:1	63000939	63025788	D	mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
ENSCJAG00000010871	KNOWN_BY_PROJECTION	protein_coding	SLC35E2B	chromosome:C_jacchus3.2.1:7:1:155834243:1	36129341	36165069	R	solute carrier family 35, member E2B [Source:HGNC Symbol;Acc:HGNC:33941]
ENSCJAG00000017352	NOVEL	protein_coding	ENSCJAG00000017352	chromosome:C_jacchus3.2.1:10:1:132174527:1	71188896	71192832	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031942}  [Source:UniProtKB/TrEMBL;Acc:F7HVT9]
ENSCJAG00000007455	KNOWN_BY_PROJECTION	protein_coding	PI4KB	chromosome:C_jacchus3.2.1:18:1:47448759:1	5269727	5304925	R	phosphatidylinositol 4-kinase, catalytic, beta [Source:HGNC Symbol;Acc:HGNC:8984]
ENSCJAG00000017353	KNOWN_BY_PROJECTION	protein_coding	MDGA2	chromosome:C_jacchus3.2.1:10:1:132174527:1	71345151	71823378	R	MAM domain containing glycosylphosphatidylinositol anchor 2 [Source:HGNC Symbol;Acc:HGNC:19835]
ENSCJAG00000012438	NOVEL	protein_coding	ENSCJAG00000012438	chromosome:C_jacchus3.2.1:1:1:210400635:1	200139324	200221160	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044044}  [Source:UniProtKB/TrEMBL;Acc:F7HCD1]
ENSCJAG00000013566	KNOWN	protein_coding	NLGN3	chromosome:C_jacchus3.2.1:X:1:142054208:1	63028896	63055919	D	Neuroligin-3 isoform 2 {ECO:0000313|EMBL:JAB18069.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024963}  [Source:UniProtKB/TrEMBL;Acc:F6QUG2]
ENSCJAG00000012332	KNOWN	protein_coding	ARL10	chromosome:C_jacchus3.2.1:2:1:204313951:1	63068243	63075040	D	ADP-ribosylation factor-like protein 10 {ECO:0000313|EMBL:JAB19678.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022583}  [Source:UniProtKB/TrEMBL;Acc:F7I636]
ENSCJAG00000034253	NOVEL	protein_coding	ENSCJAG00000034253	chromosome:C_jacchus3.2.1:X:1:142054208:1	63036949	63037184	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049860}  [Source:UniProtKB/TrEMBL;Acc:F6YUU7]
ENSCJAG00000004935	KNOWN_BY_PROJECTION	protein_coding	PALM3	chromosome:C_jacchus3.2.1:22:1:49145316:1	13293111	13300929	R	paralemmin 3 [Source:HGNC Symbol;Acc:HGNC:33274]
ENSCJAG00000013562	KNOWN	protein_coding	GJB1	chromosome:C_jacchus3.2.1:X:1:142054208:1	63103330	63111653	D	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F6RE67]
ENSCJAG00000012315	KNOWN	protein_coding	ENSCJAG00000012315	chromosome:C_jacchus3.2.1:2:1:204313951:1	63084446	63090859	R	Nucleolar protein 16 isoform 3 {ECO:0000313|EMBL:JAB01761.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022577}  [Source:UniProtKB/TrEMBL;Acc:F7I665]
ENSCJAG00000004926	NOVEL	protein_coding	ENSCJAG00000004926	chromosome:C_jacchus3.2.1:22:1:49145316:1	13310320	13312513	D	<no descrition>
ENSCJAG00000036444	KNOWN_BY_PROJECTION	protein_coding	TTC25	chromosome:C_jacchus3.2.1:5:1:159171411:1	113516532	113530811	D	tetratricopeptide repeat domain 25 [Source:HGNC Symbol;Acc:HGNC:25280]
ENSCJAG00000004924	KNOWN_BY_PROJECTION	protein_coding	C19orf67	chromosome:C_jacchus3.2.1:22:1:49145316:1	13319896	13323621	R	chromosome 19 open reading frame 67 [Source:HGNC Symbol;Acc:HGNC:34354]
ENSCJAG00000014973	KNOWN_BY_PROJECTION	protein_coding	CNP	chromosome:C_jacchus3.2.1:5:1:159171411:1	113559891	113566382	D	2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]
ENSCJAG00000013481	KNOWN_BY_PROJECTION	protein_coding	ZMYM3	chromosome:C_jacchus3.2.1:X:1:142054208:1	63133019	63148917	R	zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
ENSCJAG00000001742	NOVEL	protein_coding	ENSCJAG00000001742	chromosome:C_jacchus3.2.1:4:1:171630274:1	104714400	104715168	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003116}  [Source:UniProtKB/TrEMBL;Acc:F7DWM4]
ENSCJAG00000035248	KNOWN_BY_PROJECTION	protein_coding	SAMD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13326512	13328239	R	sterile alpha motif domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17958]
ENSCJAG00000010843	KNOWN_BY_PROJECTION	protein_coding	NADK	chromosome:C_jacchus3.2.1:7:1:155834243:1	36172165	36196740	R	NAD kinase [Source:HGNC Symbol;Acc:HGNC:29831]
ENSCJAG00000012310	KNOWN	protein_coding	HIGD2A	chromosome:C_jacchus3.2.1:2:1:204313951:1	63090291	63091246	D	HIG1 domain family member 2A {ECO:0000313|EMBL:JAB03419.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022550}  [Source:UniProtKB/TrEMBL;Acc:F7IAW2]
ENSCJAG00000012284	KNOWN	protein_coding	CLTB	chromosome:C_jacchus3.2.1:2:1:204313951:1	63093344	63120337	R	Clathrin light chain B isoform b {ECO:0000313|EMBL:JAB30418.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022539}  [Source:UniProtKB/TrEMBL;Acc:F7ID71]
ENSCJAG00000007482	KNOWN	protein_coding	RFX5	chromosome:C_jacchus3.2.1:18:1:47448759:1	5324138	5329766	R	DNA-binding protein RFX5 {ECO:0000313|EMBL:JAB07230.1}; Regulatory factor X, 5, isoform 1 (Predicted) {ECO:0000313|EMBL:ABY82094.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013944}  [Source:UniProtKB/TrEMBL;Acc:B0KWC2]
ENSCJAG00000006332	KNOWN_BY_PROJECTION	protein_coding	PRDM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	105524639	105548501	D	PR domain containing 1, with ZNF domain [Source:HGNC Symbol;Acc:HGNC:9346]
ENSCJAG00000036435	KNOWN	protein_coding	N4BP3	chromosome:C_jacchus3.2.1:2:1:204313951:1	63224208	63232624	D	NEDD4-binding protein 3 {ECO:0000313|EMBL:JAB07304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022494}  [Source:UniProtKB/TrEMBL;Acc:F7IML6]
ENSCJAG00000012403	KNOWN_BY_PROJECTION	protein_coding	GCAT	chromosome:C_jacchus3.2.1:1:1:210400635:1	200248102	200259981	D	glycine C-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:4188]
ENSCJAG00000012259	KNOWN	protein_coding	RMND5B	chromosome:C_jacchus3.2.1:2:1:204313951:1	63231990	63260425	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022489}  [Source:UniProtKB/TrEMBL;Acc:F7IMP1]
ENSCJAG00000036744	KNOWN	protein_coding	NONO	chromosome:C_jacchus3.2.1:X:1:142054208:1	63169618	63191912	D	Non-POU domain-containing octamer-binding protein isoform 1 {ECO:0000313|EMBL:JAB19761.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024761}  [Source:UniProtKB/TrEMBL;Acc:F6R552]
ENSCJAG00000004906	KNOWN_BY_PROJECTION	protein_coding	PRKACA	chromosome:C_jacchus3.2.1:22:1:49145316:1	13333641	13355480	R	protein kinase, cAMP-dependent, catalytic, alpha [Source:HGNC Symbol;Acc:HGNC:9380]
ENSCJAG00000004898	KNOWN_BY_PROJECTION	protein_coding	ASF1B	chromosome:C_jacchus3.2.1:22:1:49145316:1	13362882	13376819	R	anti-silencing function 1B histone chaperone [Source:HGNC Symbol;Acc:HGNC:20996]
ENSCJAG00000012244	KNOWN	protein_coding	ENSCJAG00000012244	chromosome:C_jacchus3.2.1:2:1:204313951:1	63261380	63266676	R	H/ACA ribonucleoprotein complex subunit 2 isoform a {ECO:0000313|EMBL:JAB12760.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022459}  [Source:UniProtKB/TrEMBL;Acc:F7ISE7]
ENSCJAG00000004850	KNOWN_BY_PROJECTION	protein_coding	LPHN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13405070	13440699	R	latrophilin 1 [Source:HGNC Symbol;Acc:HGNC:20973]
ENSCJAG00000012235	KNOWN_BY_PROJECTION	protein_coding	HNRNPAB	chromosome:C_jacchus3.2.1:2:1:204313951:1	63311198	63316707	D	heterogeneous nuclear ribonucleoprotein A/B [Source:HGNC Symbol;Acc:HGNC:5034]
ENSCJAG00000010813	KNOWN	protein_coding	GNB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	36203838	36309528	R	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 {ECO:0000313|EMBL:JAB10598.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019968}  [Source:UniProtKB/TrEMBL;Acc:F6Z808]
ENSCJAG00000035699	KNOWN	protein_coding	DNAJC7	chromosome:C_jacchus3.2.1:5:1:159171411:1	113570492	113608388	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045140}  [Source:UniProtKB/TrEMBL;Acc:F6SA44]
ENSCJAG00000034952	NOVEL	protein_coding	ENSCJAG00000034952	chromosome:C_jacchus3.2.1:10:1:132174527:1	72333962	72334988	D	<no descrition>
ENSCJAG00000012215	KNOWN	protein_coding	PHYKPL	chromosome:C_jacchus3.2.1:2:1:204313951:1	63319953	63341443	R	5-phosphohydroxy-L-lysine phospho-lyase {ECO:0000313|EMBL:JAB08050.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022421}  [Source:UniProtKB/TrEMBL;Acc:F7HU88]
ENSCJAG00000035296	NOVEL	protein_coding	ENSCJAG00000035296	chromosome:C_jacchus3.2.1:10:1:132174527:1	72871843	72873868	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050494}  [Source:UniProtKB/TrEMBL;Acc:F7GYJ2]
ENSCJAG00000013390	NOVEL	protein_coding	ENSCJAG00000013390	chromosome:C_jacchus3.2.1:X:1:142054208:1	63190896	63387318	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024653}  [Source:UniProtKB/TrEMBL;Acc:F6U8D3]
ENSCJAG00000004778	KNOWN_BY_PROJECTION	protein_coding	CD97	chromosome:C_jacchus3.2.1:22:1:49145316:1	13648177	13677749	D	CD97 molecule [Source:HGNC Symbol;Acc:HGNC:1711]
ENSCJAG00000002516	KNOWN_BY_PROJECTION	protein_coding	AGTR2	chromosome:C_jacchus3.2.1:X:1:142054208:1	104342158	104346423	D	angiotensin II receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:338]
ENSCJAG00000012394	KNOWN_BY_PROJECTION	protein_coding	GALR3	chromosome:C_jacchus3.2.1:1:1:210400635:1	200268417	200270577	D	galanin receptor 3 [Source:HGNC Symbol;Acc:HGNC:4134]
ENSCJAG00000002486	KNOWN	protein_coding	SLC6A14	chromosome:C_jacchus3.2.1:X:1:142054208:1	104647396	104673191	D	Transporter {ECO:0000256|RuleBase:RU003732}  [Source:UniProtKB/TrEMBL;Acc:F7BP63]
ENSCJAG00000012378	KNOWN	protein_coding	ANKRD54	chromosome:C_jacchus3.2.1:1:1:210400635:1	200279783	200299164	R	Ankyrin repeat domain-containing protein 54 {ECO:0000313|EMBL:JAB01814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022686}  [Source:UniProtKB/TrEMBL;Acc:F7IPV1]
ENSCJAG00000022558	NOVEL	pseudogene	ENSCJAG00000022558	chromosome:C_jacchus3.2.1:10:1:132174527:1	73790269	73790966	R	<no descrition>
ENSCJAG00000017384	NOVEL	pseudogene	ENSCJAG00000017384	chromosome:C_jacchus3.2.1:10:1:132174527:1	74086512	74087804	R	<no descrition>
ENSCJAG00000017389	KNOWN_BY_PROJECTION	protein_coding	RPS29	chromosome:C_jacchus3.2.1:10:1:132174527:1	74104638	74109945	R	ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
ENSCJAG00000010808	KNOWN_BY_PROJECTION	protein_coding	CALML6	chromosome:C_jacchus3.2.1:7:1:155834243:1	36340081	36342590	D	calmodulin-like 6 [Source:HGNC Symbol;Acc:HGNC:24193]
ENSCJAG00000010801	NOVEL	pseudogene	ENSCJAG00000010801	chromosome:C_jacchus3.2.1:7:1:155834243:1	36343292	36343518	R	<no descrition>
ENSCJAG00000017394	KNOWN_BY_PROJECTION	protein_coding	LRR1	chromosome:C_jacchus3.2.1:10:1:132174527:1	74123453	74135914	D	leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
ENSCJAG00000012175	KNOWN_BY_PROJECTION	protein_coding	COL23A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	63347777	63714584	R	collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
ENSCJAG00000013429	KNOWN_BY_PROJECTION	protein_coding	ITGB1BP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	63204261	63206790	D	integrin beta 1 binding protein (melusin) 2 [Source:HGNC Symbol;Acc:HGNC:6154]
ENSCJAG00000007509	NOVEL	protein_coding	SELENBP1_1	chromosome:C_jacchus3.2.1:18:1:47448759:1	5354610	5364673	R	Selenium binding protein 1 (Predicted) {ECO:0000313|EMBL:ABY82095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045167}  [Source:UniProtKB/TrEMBL;Acc:B0KWC4]
ENSCJAG00000002485	KNOWN_BY_PROJECTION	protein_coding	CT83	chromosome:C_jacchus3.2.1:X:1:142054208:1	104673472	104674612	R	cancer/testis antigen 83 [Source:HGNC Symbol;Acc:HGNC:33494]
ENSCJAG00000002472	NOVEL	protein_coding	ENSCJAG00000002472	chromosome:C_jacchus3.2.1:X:1:142054208:1	105239995	105242606	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004516}  [Source:UniProtKB/TrEMBL;Acc:F7CKA5]
ENSCJAG00000006306	KNOWN	protein_coding	ATG5	chromosome:C_jacchus3.2.1:4:1:171630274:1	105630009	105801392	R	Autophagy protein 5 {ECO:0000313|EMBL:JAB04802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011646}  [Source:UniProtKB/TrEMBL;Acc:F7D5N7]
ENSCJAG00000013308	KNOWN	protein_coding	OGT	chromosome:C_jacchus3.2.1:X:1:142054208:1	63468405	63512816	D	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform 1 {ECO:0000313|EMBL:JAB07939.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024576}  [Source:UniProtKB/TrEMBL;Acc:F7G0L9]
ENSCJAG00000004760	KNOWN_BY_PROJECTION	protein_coding	DDX39A	chromosome:C_jacchus3.2.1:22:1:49145316:1	13677984	13683972	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Source:HGNC Symbol;Acc:HGNC:17821]
ENSCJAG00000012089	KNOWN_BY_PROJECTION	protein_coding	CLK4	chromosome:C_jacchus3.2.1:2:1:204313951:1	63640679	63748326	R	CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
ENSCJAG00000004713	KNOWN_BY_PROJECTION	protein_coding	PKN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13713422	13749933	D	protein kinase N1 [Source:HGNC Symbol;Acc:HGNC:9405]
ENSCJAG00000014888	KNOWN	protein_coding	NKIRAS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	113607709	113616180	D	NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform a {ECO:0000313|EMBL:JAB01614.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027420}  [Source:UniProtKB/TrEMBL;Acc:F7GUH1]
ENSCJAG00000014878	KNOWN_BY_PROJECTION	protein_coding	ZNF385C	chromosome:C_jacchus3.2.1:5:1:159171411:1	113617420	113633859	R	zinc finger protein 385C [Source:HGNC Symbol;Acc:HGNC:33722]
ENSCJAG00000012225	KNOWN	protein_coding	EIF3L	chromosome:C_jacchus3.2.1:1:1:210400635:1	200302268	200338719	D	Eukaryotic translation initiation factor 3 subunit L {ECO:0000256|HAMAP-Rule:MF_03011}  [Source:UniProtKB/TrEMBL;Acc:F6SZJ6]
ENSCJAG00000017409	NOVEL	protein_coding	ENSCJAG00000017409	chromosome:C_jacchus3.2.1:10:1:132174527:1	74140602	74141045	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032061}  [Source:UniProtKB/TrEMBL;Acc:F7HCF3]
ENSCJAG00000031514	KNOWN_BY_PROJECTION	protein_coding	ACRC	chromosome:C_jacchus3.2.1:X:1:142054208:1	63546958	63552901	D	acidic repeat containing [Source:HGNC Symbol;Acc:HGNC:15805]
ENSCJAG00000017412	KNOWN_BY_PROJECTION	protein_coding	MGAT2	chromosome:C_jacchus3.2.1:10:1:132174527:1	74142843	74144186	D	mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:7045]
ENSCJAG00000006395	KNOWN_BY_PROJECTION	protein_coding	CXCR3	chromosome:C_jacchus3.2.1:X:1:142054208:1	63556221	63558800	R	chemokine (C-X-C motif) receptor 3 [Source:HGNC Symbol;Acc:HGNC:4540]
ENSCJAG00000032793	NOVEL	protein_coding	ENSCJAG00000032793	chromosome:C_jacchus3.2.1:X:1:142054208:1	63604177	63608881	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035940}  [Source:UniProtKB/TrEMBL;Acc:F7EUL8]
ENSCJAG00000017421	KNOWN_BY_PROJECTION	protein_coding	DNAAF2	chromosome:C_jacchus3.2.1:10:1:132174527:1	74146964	74160202	R	dynein, axonemal, assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:20188]
ENSCJAG00000032034	NOVEL	protein_coding	ENSCJAG00000032034	chromosome:C_jacchus3.2.1:X:1:142054208:1	63665050	63668076	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051437}  [Source:UniProtKB/TrEMBL;Acc:F7BKG9]
ENSCJAG00000005016	KNOWN_BY_PROJECTION	protein_coding	RGAG4	chromosome:C_jacchus3.2.1:X:1:142054208:1	63941019	63942401	R	retrotransposon gag domain containing 4 [Source:HGNC Symbol;Acc:HGNC:29430]
ENSCJAG00000005012	KNOWN_BY_PROJECTION	protein_coding	NHSL2	chromosome:C_jacchus3.2.1:X:1:142054208:1	63950803	63957420	D	NHS-like 2 [Source:HGNC Symbol;Acc:HGNC:33737]
ENSCJAG00000006328	NOVEL	pseudogene	ENSCJAG00000006328	chromosome:C_jacchus3.2.1:4:1:171630274:1	105757929	105758799	D	<no descrition>
ENSCJAG00000014852	KNOWN_BY_PROJECTION	protein_coding	DHX58	chromosome:C_jacchus3.2.1:5:1:159171411:1	113691342	113705589	R	DEXH (Asp-Glu-X-His) box polypeptide 58 [Source:HGNC Symbol;Acc:HGNC:29517]
ENSCJAG00000004992	NOVEL	protein_coding	ENSCJAG00000004992	chromosome:C_jacchus3.2.1:X:1:142054208:1	63997724	64007191	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009136}  [Source:UniProtKB/TrEMBL;Acc:F7ISJ5]
ENSCJAG00000022332	KNOWN_BY_PROJECTION	protein_coding	ERCC6L	chromosome:C_jacchus3.2.1:X:1:142054208:1	64014621	64041997	R	excision repair cross-complementation group 6-like [Source:HGNC Symbol;Acc:HGNC:20794]
ENSCJAG00000002447	KNOWN	protein_coding	KLHL13	chromosome:C_jacchus3.2.1:X:1:142054208:1	105963826	106158394	R	Kelch-like protein 13 isoform d {ECO:0000313|EMBL:JAB46050.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043957}  [Source:UniProtKB/TrEMBL;Acc:F7IRE7]
ENSCJAG00000004192	KNOWN	protein_coding	RPS4X	chromosome:C_jacchus3.2.1:X:1:142054208:1	64076136	64080845	R	40S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116}  [Source:UniProtKB/TrEMBL;Acc:F6PQP1]
ENSCJAG00000004200	KNOWN	protein_coding	CITED1	chromosome:C_jacchus3.2.1:X:1:142054208:1	64110849	64116422	R	Cbp/p300-interacting transactivator 1 isoform 2 {ECO:0000313|EMBL:JAB28612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051025}  [Source:UniProtKB/TrEMBL;Acc:F7CIL8]
ENSCJAG00000017431	KNOWN	protein_coding	POLE2	chromosome:C_jacchus3.2.1:10:1:132174527:1	74168225	74204488	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050919}  [Source:UniProtKB/TrEMBL;Acc:F6U949]
ENSCJAG00000007519	NOVEL	protein_coding	PSMB4	chromosome:C_jacchus3.2.1:18:1:47448759:1	5391358	5393728	D	Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}  [Source:UniProtKB/TrEMBL;Acc:B0KWC6]
ENSCJAG00000002442	NOVEL	pseudogene	ENSCJAG00000002442	chromosome:C_jacchus3.2.1:X:1:142054208:1	106170089	106171315	D	<no descrition>
ENSCJAG00000004217	KNOWN	protein_coding	HDAC8	chromosome:C_jacchus3.2.1:X:1:142054208:1	64141676	64425599	R	Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}  [Source:UniProtKB/TrEMBL;Acc:F6TCX9]
ENSCJAG00000014837	KNOWN_BY_PROJECTION	protein_coding	KAT2A	chromosome:C_jacchus3.2.1:5:1:159171411:1	113706481	113714295	R	K(lysine) acetyltransferase 2A [Source:HGNC Symbol;Acc:HGNC:4201]
ENSCJAG00000010782	NOVEL	protein_coding	ENSCJAG00000010782	chromosome:C_jacchus3.2.1:7:1:155834243:1	36348594	36353939	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019898}  [Source:UniProtKB/TrEMBL;Acc:F7BSR8]
ENSCJAG00000004706	KNOWN	protein_coding	PTGER1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13750536	13753365	R	Prostaglandin E2 receptor EP1 subtype {ECO:0000313|EMBL:JAB03553.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008547}  [Source:UniProtKB/TrEMBL;Acc:F7HTH9]
ENSCJAG00000032312	NOVEL	protein_coding	ENSCJAG00000032312	chromosome:C_jacchus3.2.1:7:1:155834243:1	36360684	36397674	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045968}  [Source:UniProtKB/TrEMBL;Acc:F6SF43]
ENSCJAG00000032196	NOVEL	pseudogene	ENSCJAG00000032196	chromosome:C_jacchus3.2.1:7:1:155834243:1	36362947	36363289	R	<no descrition>
ENSCJAG00000002408	KNOWN	protein_coding	WDR44	chromosome:C_jacchus3.2.1:X:1:142054208:1	106388713	106491668	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004431}  [Source:UniProtKB/TrEMBL;Acc:F6YNA5]
ENSCJAG00000004679	NOVEL	protein_coding	ENSCJAG00000004679	chromosome:C_jacchus3.2.1:22:1:49145316:1	13756245	13760433	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008516}  [Source:UniProtKB/TrEMBL;Acc:F7HYW2]
ENSCJAG00000002396	KNOWN_BY_PROJECTION	protein_coding	CFAP74	chromosome:C_jacchus3.2.1:7:1:155834243:1	36379019	36422089	R	cilia and flagella associated protein 74 [Source:HGNC Symbol;Acc:HGNC:29368]
ENSCJAG00000004673	NOVEL	pseudogene	ENSCJAG00000004673	chromosome:C_jacchus3.2.1:22:1:49145316:1	13781834	13782302	R	<no descrition>
ENSCJAG00000002398	KNOWN_BY_PROJECTION	protein_coding	GABRD	chromosome:C_jacchus3.2.1:7:1:155834243:1	36457454	36462450	D	gamma-aminobutyric acid (GABA) A receptor, delta [Source:HGNC Symbol;Acc:HGNC:4084]
ENSCJAG00000004666	KNOWN_BY_PROJECTION	protein_coding	DNAJB1	chromosome:C_jacchus3.2.1:22:1:49145316:1	13786280	13796655	R	DnaJ (Hsp40) homolog, subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:5270]
ENSCJAG00000007565	KNOWN	protein_coding	POGZ	chromosome:C_jacchus3.2.1:18:1:47448759:1	5394501	5441342	R	Pogo transposable element with ZNF domain isoform 1 {ECO:0000313|EMBL:JAB31009.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014157}  [Source:UniProtKB/TrEMBL;Acc:F7IE76]
ENSCJAG00000004244	KNOWN	protein_coding	PHKA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	64431945	64632841	R	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform isoform 2 {ECO:0000313|EMBL:JAB32019.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007779}  [Source:UniProtKB/TrEMBL;Acc:F6WXV3]
ENSCJAG00000004626	KNOWN_BY_PROJECTION	protein_coding	TECR	chromosome:C_jacchus3.2.1:22:1:49145316:1	13798896	13838385	D	trans-2,3-enoyl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:4551]
ENSCJAG00000012077	KNOWN_BY_PROJECTION	protein_coding	ZNF354A	chromosome:C_jacchus3.2.1:2:1:204313951:1	63847612	63865992	R	zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
ENSCJAG00000012069	KNOWN_BY_PROJECTION	protein_coding	OR1G1	chromosome:C_jacchus3.2.1:2:1:204313951:1	63887299	63909169	R	olfactory receptor, family 1, subfamily G, member 1 [Source:HGNC Symbol;Acc:HGNC:8204]
ENSCJAG00000033536	NOVEL	pseudogene	ENSCJAG00000033536	chromosome:C_jacchus3.2.1:2:1:204313951:1	63887636	63888203	R	<no descrition>
ENSCJAG00000012060	KNOWN_BY_PROJECTION	protein_coding	PROP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	63945225	63949558	D	PROP paired-like homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9455]
ENSCJAG00000002409	KNOWN_BY_PROJECTION	protein_coding	PRKCZ	chromosome:C_jacchus3.2.1:7:1:155834243:1	36487647	36613773	D	protein kinase C, zeta [Source:HGNC Symbol;Acc:HGNC:9412]
ENSCJAG00000033854	NOVEL	pseudogene	ENSCJAG00000033854	chromosome:C_jacchus3.2.1:2:1:204313951:1	64020460	64020965	D	<no descrition>
ENSCJAG00000031550	NOVEL	pseudogene	ENSCJAG00000031550	chromosome:C_jacchus3.2.1:2:1:204313951:1	64025010	64026083	R	<no descrition>
ENSCJAG00000006246	KNOWN_BY_PROJECTION	protein_coding	AIM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	105835849	106068395	D	absent in melanoma 1 [Source:HGNC Symbol;Acc:HGNC:356]
ENSCJAG00000014826	NOVEL	pseudogene	ENSCJAG00000014826	chromosome:C_jacchus3.2.1:5:1:159171411:1	113714362	113716248	D	<no descrition>
ENSCJAG00000005367	KNOWN_BY_PROJECTION	protein_coding	CPLX2	chromosome:C_jacchus3.2.1:2:1:204313951:1	64124594	64131100	R	complexin 2 [Source:HGNC Symbol;Acc:HGNC:2310]
ENSCJAG00000034437	NOVEL	protein_coding	ENSCJAG00000034437	chromosome:C_jacchus3.2.1:5:1:159171411:1	113755274	113761127	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043031}  [Source:UniProtKB/TrEMBL;Acc:F7HYQ1]
ENSCJAG00000004315	NOVEL	protein_coding	ENSCJAG00000004315	chromosome:C_jacchus3.2.1:X:1:142054208:1	64465361	64467306	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007813}  [Source:UniProtKB/TrEMBL;Acc:F6UL05]
ENSCJAG00000005384	KNOWN_BY_PROJECTION	protein_coding	HRH2	chromosome:C_jacchus3.2.1:2:1:204313951:1	64335786	64339207	R	histamine receptor H2 [Source:HGNC Symbol;Acc:HGNC:5183]
ENSCJAG00000000472	NOVEL	protein_coding	ENSCJAG00000000472	chromosome:C_jacchus3.2.1:5:1:159171411:1	113823935	113854987	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000807}  [Source:UniProtKB/TrEMBL;Acc:F6Q862]
ENSCJAG00000000229	KNOWN	protein_coding	DMRTC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	64645251	64652004	R	Doublesex-and mab-3-related transcription factor C1 {ECO:0000313|EMBL:JAB14022.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000378}  [Source:UniProtKB/TrEMBL;Acc:F7HDQ1]
ENSCJAG00000033164	NOVEL	protein_coding	ENSCJAG00000033164	chromosome:C_jacchus3.2.1:X:1:142054208:1	64696423	64697004	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042564}  [Source:UniProtKB/TrEMBL;Acc:F6V4U7]
ENSCJAG00000005397	KNOWN	protein_coding	SFXN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	64497122	64545767	R	Sideroflexin-1 {ECO:0000313|EMBL:JAB07911.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009892}  [Source:UniProtKB/TrEMBL;Acc:F7F6B4]
ENSCJAG00000016443	KNOWN	protein_coding	NAP1L2	chromosome:C_jacchus3.2.1:X:1:142054208:1	64929652	64931040	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030260}  [Source:UniProtKB/TrEMBL;Acc:F7ART9]
ENSCJAG00000033967	NOVEL	protein_coding	ENSCJAG00000033967	chromosome:C_jacchus3.2.1:X:1:142054208:1	65003919	65004233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050693}  [Source:UniProtKB/TrEMBL;Acc:F7GDK7]
ENSCJAG00000016436	KNOWN	protein_coding	CHIC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	65182443	65206719	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030246}  [Source:UniProtKB/TrEMBL;Acc:F7BA49]
ENSCJAG00000004611	NOVEL	protein_coding	ENSCJAG00000004611	chromosome:C_jacchus3.2.1:22:1:49145316:1	13838545	13844274	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008368}  [Source:UniProtKB/TrEMBL;Acc:F7HN05]
ENSCJAG00000010564	NOVEL	protein_coding	ENSCJAG00000010564	chromosome:C_jacchus3.2.1:X:1:142054208:1	65286468	65286990	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019479}  [Source:UniProtKB/TrEMBL;Acc:F6SSM3]
ENSCJAG00000023215	KNOWN	protein_coding	DRD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	64592204	64595707	D	D(1A) dopamine receptor {ECO:0000313|EMBL:JAB18139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041729}  [Source:UniProtKB/TrEMBL;Acc:F7GPB6]
ENSCJAG00000010567	NOVEL	pseudogene	ENSCJAG00000010567	chromosome:C_jacchus3.2.1:X:1:142054208:1	65384763	65386211	R	<no descrition>
ENSCJAG00000005425	NOVEL	protein_coding	ENSCJAG00000005425	chromosome:C_jacchus3.2.1:2:1:204313951:1	64752118	64769050	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047074}  [Source:UniProtKB/TrEMBL;Acc:F7I6L9]
ENSCJAG00000010570	NOVEL	protein_coding	ENSCJAG00000010570	chromosome:C_jacchus3.2.1:X:1:142054208:1	65435688	65446186	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019487}  [Source:UniProtKB/TrEMBL;Acc:F6SHG0]
ENSCJAG00000002454	NOVEL	protein_coding	ENSCJAG00000002454	chromosome:C_jacchus3.2.1:7:1:155834243:1	36612856	36626884	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004478}  [Source:UniProtKB/TrEMBL;Acc:F6WTB5]
ENSCJAG00000000460	KNOWN_BY_PROJECTION	protein_coding	KCNH4	chromosome:C_jacchus3.2.1:5:1:159171411:1	113856935	113879984	R	potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
ENSCJAG00000010572	NOVEL	protein_coding	ENSCJAG00000010572	chromosome:C_jacchus3.2.1:X:1:142054208:1	65630937	65631757	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019495}  [Source:UniProtKB/TrEMBL;Acc:F6SGV9]
ENSCJAG00000010580	NOVEL	pseudogene	ENSCJAG00000010580	chromosome:C_jacchus3.2.1:X:1:142054208:1	65731961	65732261	R	<no descrition>
ENSCJAG00000010581	NOVEL	pseudogene	ENSCJAG00000010581	chromosome:C_jacchus3.2.1:X:1:142054208:1	65793634	65794046	D	<no descrition>
ENSCJAG00000002469	KNOWN_BY_PROJECTION	protein_coding	SKI	chromosome:C_jacchus3.2.1:7:1:155834243:1	36736256	36739710	D	SKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]
ENSCJAG00000010582	NOVEL	protein_coding	ENSCJAG00000010582	chromosome:C_jacchus3.2.1:X:1:142054208:1	65891232	65895638	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019540}  [Source:UniProtKB/TrEMBL;Acc:F6R7B3]
ENSCJAG00000004588	KNOWN_BY_PROJECTION	protein_coding	CLEC17A	chromosome:C_jacchus3.2.1:22:1:49145316:1	13855256	13884585	D	C-type lectin domain family 17, member A [Source:HGNC Symbol;Acc:HGNC:34520]
ENSCJAG00000010604	NOVEL	pseudogene	ENSCJAG00000010604	chromosome:C_jacchus3.2.1:X:1:142054208:1	66038505	66038992	D	<no descrition>
ENSCJAG00000010611	NOVEL	protein_coding	ENSCJAG00000010611	chromosome:C_jacchus3.2.1:X:1:142054208:1	66126395	66126997	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019550}  [Source:UniProtKB/TrEMBL;Acc:F6QXQ7]
ENSCJAG00000013221	NOVEL	protein_coding	ENSCJAG00000013221	chromosome:C_jacchus3.2.1:X:1:142054208:1	66162546	66163217	D	<no descrition>
ENSCJAG00000004557	KNOWN_BY_PROJECTION	protein_coding	EMR3	chromosome:C_jacchus3.2.1:22:1:49145316:1	13900685	13943428	R	egf-like module containing, mucin-like, hormone receptor-like 3 [Source:HGNC Symbol;Acc:HGNC:23647]
ENSCJAG00000033849	NOVEL	protein_coding	RPA2	chromosome:C_jacchus3.2.1:18:1:47448759:1	5433731	5436211	R	Replication protein A2, 32kDa (Predicted) {ECO:0000313|EMBL:ABY82099.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017372}  [Source:UniProtKB/TrEMBL;Acc:B0KWC8]
ENSCJAG00000002429	KNOWN	protein_coding	MORN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	36761520	36827287	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004456}  [Source:UniProtKB/TrEMBL;Acc:F6Y3B3]
ENSCJAG00000006301	NOVEL	pseudogene	ENSCJAG00000006301	chromosome:C_jacchus3.2.1:4:1:171630274:1	105920673	105922235	D	<no descrition>
ENSCJAG00000002281	KNOWN_BY_PROJECTION	protein_coding	DOCK11	chromosome:C_jacchus3.2.1:X:1:142054208:1	106588920	106744866	D	dedicator of cytokinesis 11 [Source:HGNC Symbol;Acc:HGNC:23483]
ENSCJAG00000006218	KNOWN_BY_PROJECTION	protein_coding	RTN4IP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	106071218	106128620	R	reticulon 4 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:18647]
ENSCJAG00000007659	KNOWN	protein_coding	CGN	chromosome:C_jacchus3.2.1:18:1:47448759:1	5513367	5542908	D	Cingulin  [Source:UniProtKB/Swiss-Prot;Acc:B0KWC9]
ENSCJAG00000002471	KNOWN_BY_PROJECTION	protein_coding	RER1	chromosome:C_jacchus3.2.1:7:1:155834243:1	36827414	36840367	D	retention in endoplasmic reticulum sorting receptor 1 [Source:HGNC Symbol;Acc:HGNC:30309]
ENSCJAG00000004543	KNOWN_BY_PROJECTION	protein_coding	ZNF333	chromosome:C_jacchus3.2.1:22:1:49145316:1	13969807	13992224	D	zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
ENSCJAG00000002487	KNOWN	protein_coding	PEX10	chromosome:C_jacchus3.2.1:7:1:155834243:1	36842030	36848568	R	Peroxisome biogenesis factor 10 isoform 2 {ECO:0000313|EMBL:JAB21480.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004540}  [Source:UniProtKB/TrEMBL;Acc:F7C529]
ENSCJAG00000004537	NOVEL	protein_coding	CJA24	chromosome:C_jacchus3.2.1:22:1:49145316:1	14009657	14018963	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7IFP1]
ENSCJAG00000004498	KNOWN	protein_coding	SLC1A6	chromosome:C_jacchus3.2.1:22:1:49145316:1	14025207	14082232	R	Excitatory amino acid transporter 4 isoform 1 {ECO:0000313|EMBL:JAB17365.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008179}  [Source:UniProtKB/TrEMBL;Acc:F7IQ30]
ENSCJAG00000002498	KNOWN_BY_PROJECTION	protein_coding	PLCH2	chromosome:C_jacchus3.2.1:7:1:155834243:1	36920909	36948999	D	phospholipase C, eta 2 [Source:HGNC Symbol;Acc:HGNC:29037]
ENSCJAG00000000458	KNOWN_BY_PROJECTION	protein_coding	HCRT	chromosome:C_jacchus3.2.1:5:1:159171411:1	113886735	113888997	R	hypocretin (orexin) neuropeptide precursor [Source:HGNC Symbol;Acc:HGNC:4847]
ENSCJAG00000000452	KNOWN	protein_coding	GHDC	chromosome:C_jacchus3.2.1:5:1:159171411:1	113892623	113898406	R	GH3 domain-containing protein isoform 1 {ECO:0000313|EMBL:JAB02468.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000770}  [Source:UniProtKB/TrEMBL;Acc:F6RSK2]
ENSCJAG00000033066	NOVEL	protein_coding	ENSCJAG00000033066	chromosome:C_jacchus3.2.1:2:1:204313951:1	65164052	65165383	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044776}  [Source:UniProtKB/TrEMBL;Acc:F7FHT7]
ENSCJAG00000019136	NOVEL	protein_coding	ENSCJAG00000019136	chromosome:C_jacchus3.2.1:2:1:204313951:1	65217261	65218801	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035520}  [Source:UniProtKB/TrEMBL;Acc:F7I6B4]
ENSCJAG00000006200	KNOWN_BY_PROJECTION	protein_coding	QRSL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	106128734	106163351	D	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 [Source:HGNC Symbol;Acc:HGNC:21020]
ENSCJAG00000012085	NOVEL	protein_coding	ENSCJAG00000012085	chromosome:C_jacchus3.2.1:1:1:210400635:1	200379673	200393625	D	<no descrition>
ENSCJAG00000019138	KNOWN	protein_coding	MSX2	chromosome:C_jacchus3.2.1:2:1:204313951:1	65278141	65284418	R	Homeobox protein MSX-2 {ECO:0000313|EMBL:JAB05208.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035527}  [Source:UniProtKB/TrEMBL;Acc:F7I6A5]
ENSCJAG00000019145	NOVEL	protein_coding	ENSCJAG00000019145	chromosome:C_jacchus3.2.1:2:1:204313951:1	65372524	65374471	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052189}  [Source:UniProtKB/TrEMBL;Acc:F7HXY9]
ENSCJAG00000012220	KNOWN	protein_coding	C22ORF23	chromosome:C_jacchus3.2.1:1:1:210400635:1	200396178	200405393	R	UPF0193 protein EVG1 isoform 1 {ECO:0000313|EMBL:JAB24314.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022404}  [Source:UniProtKB/TrEMBL;Acc:F7HWU8]
ENSCJAG00000019148	NOVEL	pseudogene	ENSCJAG00000019148	chromosome:C_jacchus3.2.1:2:1:204313951:1	65492212	65493172	R	<no descrition>
ENSCJAG00000037470	NOVEL	protein_coding	ENSCJAG00000037470	chromosome:C_jacchus3.2.1:5:1:159171411:1	113907470	113941739	R	Signal transducer and activator of transcription {ECO:0000256|RuleBase:RU046415}  [Source:UniProtKB/TrEMBL;Acc:F6S2M5]
ENSCJAG00000033820	NOVEL	pseudogene	ENSCJAG00000033820	chromosome:C_jacchus3.2.1:2:1:204313951:1	65669374	65670334	D	<no descrition>
ENSCJAG00000035704	NOVEL	protein_coding	ENSCJAG00000035704	chromosome:C_jacchus3.2.1:2:1:204313951:1	65885946	65958879	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052448}  [Source:UniProtKB/TrEMBL;Acc:F7I4S9]
ENSCJAG00000019152	KNOWN	protein_coding	GPIHBP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	65953404	66029936	R	Neuron-specific protein family member 2 {ECO:0000313|EMBL:JAB23064.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035551}  [Source:UniProtKB/TrEMBL;Acc:F7EH91]
ENSCJAG00000004489	KNOWN_BY_PROJECTION	protein_coding	CCDC105	chromosome:C_jacchus3.2.1:22:1:49145316:1	14104156	14117266	D	coiled-coil domain containing 105 [Source:HGNC Symbol;Acc:HGNC:26866]
ENSCJAG00000003117	NOVEL	protein_coding	ENSCJAG00000003117	chromosome:C_jacchus3.2.1:2:1:204313951:1	66075820	66076820	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005657}  [Source:UniProtKB/TrEMBL;Acc:F7I0G7]
ENSCJAG00000002520	KNOWN_BY_PROJECTION	protein_coding	PANK4	chromosome:C_jacchus3.2.1:7:1:155834243:1	36954272	36974575	R	pantothenate kinase 4 [Source:HGNC Symbol;Acc:HGNC:19366]
ENSCJAG00000019160	KNOWN_BY_PROJECTION	protein_coding	C5orf47	chromosome:C_jacchus3.2.1:2:1:204313951:1	66094833	66105913	R	chromosome 5 open reading frame 47 [Source:HGNC Symbol;Acc:HGNC:27026]
ENSCJAG00000004476	KNOWN_BY_PROJECTION	protein_coding	CASP14	chromosome:C_jacchus3.2.1:22:1:49145316:1	14146359	14154316	D	caspase 14, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:1502]
ENSCJAG00000007748	KNOWN	protein_coding	TUFT1	chromosome:C_jacchus3.2.1:18:1:47448759:1	5544211	5595440	D	Tuftelin isoform 1 {ECO:0000313|EMBL:JAB04987.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014416}  [Source:UniProtKB/TrEMBL;Acc:F7I287]
ENSCJAG00000006013	KNOWN_BY_PROJECTION	protein_coding	KLHDC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	74256964	74309355	D	kelch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19836]
ENSCJAG00000012201	KNOWN	protein_coding	POLR2F	chromosome:C_jacchus3.2.1:1:1:210400635:1	200405517	200418587	D	DNA-directed RNA polymerases I, II, and III subunit RPABC2 {ECO:0000313|EMBL:JAB11526.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022400}  [Source:UniProtKB/TrEMBL;Acc:F7HWV2]
ENSCJAG00000019166	KNOWN	protein_coding	CPEB4	chromosome:C_jacchus3.2.1:2:1:204313951:1	66134683	66209815	R	Cytoplasmic polyadenylation element-binding protein 4 {ECO:0000313|EMBL:JAB20120.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035588}  [Source:UniProtKB/TrEMBL;Acc:F7E421]
ENSCJAG00000004471	NOVEL	pseudogene	ENSCJAG00000004471	chromosome:C_jacchus3.2.1:22:1:49145316:1	14190878	14191895	D	<no descrition>
ENSCJAG00000012191	KNOWN	protein_coding	SOX10	chromosome:C_jacchus3.2.1:1:1:210400635:1	200424214	200434990	R	Transcription factor SOX-10 {ECO:0000313|EMBL:JAB28416.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022374}  [Source:UniProtKB/TrEMBL;Acc:F6XMN9]
ENSCJAG00000002549	KNOWN	protein_coding	HES5	chromosome:C_jacchus3.2.1:7:1:155834243:1	36976644	36978120	R	Transcription factor HES-5 {ECO:0000313|EMBL:JAB13580.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004635}  [Source:UniProtKB/TrEMBL;Acc:F6YLR5]
ENSCJAG00000006021	KNOWN	protein_coding	KLHDC2	chromosome:C_jacchus3.2.1:10:1:132174527:1	74319582	74336383	D	Kelch domain-containing protein 2 {ECO:0000313|EMBL:JAB06014.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011188}  [Source:UniProtKB/TrEMBL;Acc:F7HX62]
ENSCJAG00000002555	KNOWN_BY_PROJECTION	protein_coding	TNFRSF14	chromosome:C_jacchus3.2.1:7:1:155834243:1	37006490	37013427	D	tumor necrosis factor receptor superfamily, member 14 [Source:HGNC Symbol;Acc:HGNC:11912]
ENSCJAG00000019179	KNOWN	protein_coding	STC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	66820365	66833537	D	Stanniocalcin-2 {ECO:0000313|EMBL:JAB24609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035595}  [Source:UniProtKB/TrEMBL;Acc:F7E3T2]
ENSCJAG00000000426	NOVEL	protein_coding	ENSCJAG00000000426	chromosome:C_jacchus3.2.1:5:1:159171411:1	114003765	114029275	D	Signal transducer and activator of transcription {ECO:0000256|RuleBase:RU046415}  [Source:UniProtKB/TrEMBL;Acc:F6SD63]
ENSCJAG00000002407	NOVEL	protein_coding	ENSCJAG00000002407	chromosome:C_jacchus3.2.1:X:1:142054208:1	106638546	106639336	D	40S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116}  [Source:UniProtKB/TrEMBL;Acc:F7BQC6]
ENSCJAG00000019180	KNOWN_BY_PROJECTION	protein_coding	NKX2-5	chromosome:C_jacchus3.2.1:2:1:204313951:1	66924971	66928474	D	NK2 homeobox 5 [Source:HGNC Symbol;Acc:HGNC:2488]
ENSCJAG00000012142	KNOWN	protein_coding	PICK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	200514200	200533984	D	PRKCA-binding protein {ECO:0000313|EMBL:JAB10935.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022341}  [Source:UniProtKB/TrEMBL;Acc:F6Z9S9]
ENSCJAG00000005241	KNOWN	protein_coding	IL13RA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	106782693	106850330	D	Interleukin-13 receptor subunit alpha-1 {ECO:0000313|EMBL:JAB11660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009610}  [Source:UniProtKB/TrEMBL;Acc:F7GLB4]
ENSCJAG00000002073	KNOWN_BY_PROJECTION	protein_coding	SYDE1	chromosome:C_jacchus3.2.1:22:1:49145316:1	14232240	14238447	D	synapse defective 1, Rho GTPase, homolog 1 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:25824]
ENSCJAG00000002562	KNOWN_BY_PROJECTION	protein_coding	FAM213B	chromosome:C_jacchus3.2.1:7:1:155834243:1	37041164	37045411	D	family with sequence similarity 213, member B [Source:HGNC Symbol;Acc:HGNC:28390]
ENSCJAG00000007791	KNOWN	protein_coding	SNX27	chromosome:C_jacchus3.2.1:18:1:47448759:1	5632490	5748869	D	Sorting nexin-27 {ECO:0000313|EMBL:JAB30334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014539}  [Source:UniProtKB/TrEMBL;Acc:F7IIT5]
ENSCJAG00000002096	KNOWN_BY_PROJECTION	protein_coding	ILVBL	chromosome:C_jacchus3.2.1:22:1:49145316:1	14238441	14249338	R	ilvB (bacterial acetolactate synthase)-like [Source:HGNC Symbol;Acc:HGNC:6041]
ENSCJAG00000002584	KNOWN_BY_PROJECTION	protein_coding	MMEL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	37044742	37083931	R	membrane metallo-endopeptidase-like 1 [Source:HGNC Symbol;Acc:HGNC:14668]
ENSCJAG00000019186	KNOWN	protein_coding	BNIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	67001162	67020120	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035625}; Vesicle transport protein SEC20 isoform BNIP1 {ECO:0000313|EMBL:JAB01777.1}  [Source:UniProtKB/TrEMBL;Acc:F7HD34]
ENSCJAG00000005264	KNOWN_BY_PROJECTION	protein_coding	TMEM30B	chromosome:C_jacchus3.2.1:X:1:142054208:1	106826987	106828059	D	transmembrane protein 30B [Source:HGNC Symbol;Acc:HGNC:27254]
ENSCJAG00000022460	NOVEL	protein_coding	ENSCJAG00000022460	chromosome:C_jacchus3.2.1:22:1:49145316:1	14271308	14277102	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041073}  [Source:UniProtKB/TrEMBL;Acc:F7FGF0]
ENSCJAG00000005231	NOVEL	protein_coding	ENSCJAG00000005231	chromosome:C_jacchus3.2.1:X:1:142054208:1	106878504	106881826	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009564}  [Source:UniProtKB/TrEMBL;Acc:F7HCP0]
ENSCJAG00000005229	NOVEL	pseudogene	ENSCJAG00000005229	chromosome:C_jacchus3.2.1:X:1:142054208:1	106937877	106938923	R	<no descrition>
ENSCJAG00000006185	NOVEL	protein_coding	ENSCJAG00000006185	chromosome:C_jacchus3.2.1:4:1:171630274:1	106408689	106409551	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011361}  [Source:UniProtKB/TrEMBL;Acc:F7I6G6]
ENSCJAG00000006178	NOVEL	protein_coding	ENSCJAG00000006178	chromosome:C_jacchus3.2.1:4:1:171630274:1	106448978	106452123	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011347}  [Source:UniProtKB/TrEMBL;Acc:F7I8V2]
ENSCJAG00000000409	KNOWN_BY_PROJECTION	protein_coding	STAT3	chromosome:C_jacchus3.2.1:5:1:159171411:1	114034182	114071964	R	signal transducer and activator of transcription 3 (acute-phase response factor) [Source:HGNC Symbol;Acc:HGNC:11364]
ENSCJAG00000006167	KNOWN_BY_PROJECTION	protein_coding	BEND3	chromosome:C_jacchus3.2.1:4:1:171630274:1	106519801	106583879	R	BEN domain containing 3 [Source:HGNC Symbol;Acc:HGNC:23040]
ENSCJAG00000000406	KNOWN	protein_coding	PTRF	chromosome:C_jacchus3.2.1:5:1:159171411:1	114130479	114153404	R	Polymerase I and transcript release factor {ECO:0000313|EMBL:JAB23126.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000691}  [Source:UniProtKB/TrEMBL;Acc:F6U9J5]
ENSCJAG00000012113	KNOWN_BY_PROJECTION	protein_coding	SLC16A8	chromosome:C_jacchus3.2.1:1:1:210400635:1	200536588	200542264	R	solute carrier family 16 (monocarboxylate transporter), member 8 [Source:HGNC Symbol;Acc:HGNC:16270]
ENSCJAG00000000404	NOVEL	pseudogene	ENSCJAG00000000404	chromosome:C_jacchus3.2.1:5:1:159171411:1	114174647	114175371	D	<no descrition>
ENSCJAG00000019193	KNOWN	protein_coding	CREBRF	chromosome:C_jacchus3.2.1:2:1:204313951:1	67030051	67117137	R	CREB3 regulatory factor isoform 1 {ECO:0000313|EMBL:JAB11772.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035689}  [Source:UniProtKB/TrEMBL;Acc:F7GSD8]
ENSCJAG00000012023	KNOWN_BY_PROJECTION	protein_coding	BAIAP2L2	chromosome:C_jacchus3.2.1:1:1:210400635:1	200543993	200566637	R	BAI1-associated protein 2-like 2 [Source:HGNC Symbol;Acc:HGNC:26203]
ENSCJAG00000002121	KNOWN_BY_PROJECTION	protein_coding	NOTCH3	chromosome:C_jacchus3.2.1:22:1:49145316:1	14292815	14345582	R	notch 3 [Source:HGNC Symbol;Acc:HGNC:7883]
ENSCJAG00000005189	KNOWN	protein_coding	LONRF3	chromosome:C_jacchus3.2.1:X:1:142054208:1	107028476	107073817	D	LON peptidase N-terminal domain and RING finger protein 3 isoform 2 {ECO:0000313|EMBL:JAB45062.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009536}  [Source:UniProtKB/TrEMBL;Acc:F7D4G9]
ENSCJAG00000011999	KNOWN_BY_PROJECTION	protein_coding	PLA2G6	chromosome:C_jacchus3.2.1:1:1:210400635:1	200573157	200631552	R	phospholipase A2, group VI (cytosolic, calcium-independent) [Source:HGNC Symbol;Acc:HGNC:9039]
ENSCJAG00000000367	KNOWN	protein_coding	ATP6V0A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	114182467	114255734	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000680}; V-type proton ATPase 116 kDa subunit a isoform 1 isoform c {ECO:0000313|EMBL:JAB02690.1}  [Source:UniProtKB/TrEMBL;Acc:F6PPP0]
ENSCJAG00000032573	NOVEL	protein_coding	ENSCJAG00000032573	chromosome:C_jacchus3.2.1:7:1:155834243:1	37060516	37060931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034924}  [Source:UniProtKB/TrEMBL;Acc:F7ICV1]
ENSCJAG00000002648	KNOWN_BY_PROJECTION	protein_coding	TTC34	chromosome:C_jacchus3.2.1:7:1:155834243:1	37092941	37109363	R	tetratricopeptide repeat domain 34 [Source:HGNC Symbol;Acc:HGNC:34297]
ENSCJAG00000005177	NOVEL	protein_coding	ENSCJAG00000005177	chromosome:C_jacchus3.2.1:X:1:142054208:1	107119225	107121724	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046929}  [Source:UniProtKB/TrEMBL;Acc:F7I859]
ENSCJAG00000006153	KNOWN	protein_coding	PDSS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	106624980	106922889	R	Decaprenyl-diphosphate synthase subunit 2 {ECO:0000313|EMBL:JAB08174.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048947}  [Source:UniProtKB/TrEMBL;Acc:F6QHN6]
ENSCJAG00000012682	NOVEL	protein_coding	ENSCJAG00000012682	chromosome:C_jacchus3.2.1:7:1:155834243:1	37148579	37150390	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023220}  [Source:UniProtKB/TrEMBL;Acc:F7IQC7]
ENSCJAG00000005169	KNOWN_BY_PROJECTION	protein_coding	KIAA1210	chromosome:C_jacchus3.2.1:X:1:142054208:1	107128423	107137250	R	KIAA1210 [Source:HGNC Symbol;Acc:HGNC:29218]
ENSCJAG00000035245	NOVEL	protein_coding	ENSCJAG00000035245	chromosome:C_jacchus3.2.1:7:1:155834243:1	37160063	37207631	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046946}  [Source:UniProtKB/TrEMBL;Acc:F7I5S2]
ENSCJAG00000035192	NOVEL	protein_coding	ENSCJAG00000035192	chromosome:C_jacchus3.2.1:X:1:142054208:1	107140778	107154270	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048983}  [Source:UniProtKB/TrEMBL;Acc:F6PLT7]
ENSCJAG00000019225	KNOWN	protein_coding	ATP6V0E1	chromosome:C_jacchus3.2.1:2:1:204313951:1	67139244	67196974	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035703}; V-type proton ATPase subunit e 1 {ECO:0000313|EMBL:JAB07015.1}  [Source:UniProtKB/TrEMBL;Acc:F7GC30]
ENSCJAG00000006166	NOVEL	protein_coding	ENSCJAG00000006166	chromosome:C_jacchus3.2.1:4:1:171630274:1	106733648	106734231	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011317}  [Source:UniProtKB/TrEMBL;Acc:F7IDF2]
ENSCJAG00000011992	KNOWN	protein_coding	MAFF	chromosome:C_jacchus3.2.1:1:1:210400635:1	200653564	200799447	D	Transcription factor MafF isoform a {ECO:0000313|EMBL:JAB06777.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022023}  [Source:UniProtKB/TrEMBL;Acc:F7BV48]
ENSCJAG00000005166	KNOWN_BY_PROJECTION	protein_coding	PGRMC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	107288934	107296132	D	progesterone receptor membrane component 1 [Source:HGNC Symbol;Acc:HGNC:16090]
ENSCJAG00000005163	NOVEL	protein_coding	ENSCJAG00000005163	chromosome:C_jacchus3.2.1:X:1:142054208:1	107308787	107312606	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009416}  [Source:UniProtKB/TrEMBL;Acc:F7GLX5]
ENSCJAG00000006119	KNOWN_BY_PROJECTION	protein_coding	SOBP	chromosome:C_jacchus3.2.1:4:1:171630274:1	106961665	107104193	D	sine oculis binding protein homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29256]
ENSCJAG00000005140	KNOWN_BY_PROJECTION	protein_coding	SLC25A43	chromosome:C_jacchus3.2.1:X:1:142054208:1	107450294	107502748	D	solute carrier family 25, member 43 [Source:HGNC Symbol;Acc:HGNC:30557]
ENSCJAG00000022478	NOVEL	pseudogene	ENSCJAG00000022478	chromosome:C_jacchus3.2.1:7:1:155834243:1	37296984	37298275	D	<no descrition>
ENSCJAG00000031915	KNOWN_BY_PROJECTION	protein_coding	LINGO4	chromosome:C_jacchus3.2.1:18:1:47448759:1	5721107	5823783	R	leucine rich repeat and Ig domain containing 4 [Source:HGNC Symbol;Acc:HGNC:31814]
ENSCJAG00000019234	KNOWN	protein_coding	RPL26L1	chromosome:C_jacchus3.2.1:2:1:204313951:1	67210947	67221562	R	60S ribosomal protein L26-like 1 {ECO:0000313|EMBL:JAB01873.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035706}  [Source:UniProtKB/TrEMBL;Acc:F7GC20]
ENSCJAG00000005125	KNOWN	protein_coding	ENSCJAG00000005125	chromosome:C_jacchus3.2.1:X:1:142054208:1	107519786	107522968	D	ADP/ATP translocase 2 {ECO:0000313|EMBL:JAB22910.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009367}  [Source:UniProtKB/TrEMBL;Acc:F7H7Y6]
ENSCJAG00000006102	KNOWN_BY_PROJECTION	protein_coding	SCML4	chromosome:C_jacchus3.2.1:4:1:171630274:1	107169895	107286204	R	sex comb on midleg-like 4 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21397]
ENSCJAG00000007857	KNOWN	protein_coding	CELF3	chromosome:C_jacchus3.2.1:18:1:47448759:1	5727788	5739637	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014624}  [Source:UniProtKB/TrEMBL;Acc:F7I4F1]
ENSCJAG00000034457	NOVEL	protein_coding	ENSCJAG00000034457	chromosome:C_jacchus3.2.1:2:1:204313951:1	67217508	67225290	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042506}  [Source:UniProtKB/TrEMBL;Acc:F6XHB5]
ENSCJAG00000002662	KNOWN_BY_PROJECTION	protein_coding	ARHGEF16	chromosome:C_jacchus3.2.1:7:1:155834243:1	37375586	37733820	D	Rho guanine nucleotide exchange factor (GEF) 16 [Source:HGNC Symbol;Acc:HGNC:15515]
ENSCJAG00000036813	KNOWN_BY_PROJECTION	protein_coding	GVQW1	chromosome:C_jacchus3.2.1:2:1:204313951:1	67227650	67234078	R	GVQW motif containing 1 [Source:HGNC Symbol;Acc:HGNC:31424]
ENSCJAG00000019238	KNOWN	protein_coding	ERGIC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	67230051	67356305	R	Endoplasmic reticulum-Golgi intermediate compartment protein 1 {ECO:0000313|EMBL:JAB11690.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035714}  [Source:UniProtKB/TrEMBL;Acc:F7G006]
ENSCJAG00000002169	KNOWN_BY_PROJECTION	protein_coding	EPHX3	chromosome:C_jacchus3.2.1:22:1:49145316:1	14364024	14370994	R	epoxide hydrolase 3 [Source:HGNC Symbol;Acc:HGNC:23760]
ENSCJAG00000007924	NOVEL	protein_coding	ENSCJAG00000007924	chromosome:C_jacchus3.2.1:18:1:47448759:1	5733633	5754189	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014651}  [Source:UniProtKB/TrEMBL;Acc:F7HZS9]
ENSCJAG00000037171	KNOWN	protein_coding	RIIAD1	chromosome:C_jacchus3.2.1:18:1:47448759:1	5743822	5754201	D	RIIa domain-containing protein 1 {ECO:0000313|EMBL:JAB12013.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044971}  [Source:UniProtKB/TrEMBL;Acc:F7FVI1]
ENSCJAG00000011962	KNOWN	protein_coding	TMEM184B	chromosome:C_jacchus3.2.1:1:1:210400635:1	200675352	200731311	R	Transmembrane protein 184B isoform a {ECO:0000313|EMBL:JAB11324.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022012}  [Source:UniProtKB/TrEMBL;Acc:F7C9R1]
ENSCJAG00000005111	NOVEL	protein_coding	ENSCJAG00000005111	chromosome:C_jacchus3.2.1:X:1:142054208:1	107608999	107637410	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009346}  [Source:UniProtKB/TrEMBL;Acc:F7HIA5]
ENSCJAG00000007926	KNOWN_BY_PROJECTION	protein_coding	MRPL9	chromosome:C_jacchus3.2.1:18:1:47448759:1	5777602	5781419	R	mitochondrial ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:14277]
ENSCJAG00000005098	KNOWN	protein_coding	UBE2A	chromosome:C_jacchus3.2.1:X:1:142054208:1	107646189	107658306	D	Ubiquitin-conjugating enzyme E2 A isoform 1 {ECO:0000313|EMBL:JAB11169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050999}  [Source:UniProtKB/TrEMBL;Acc:F6SPE3]
ENSCJAG00000007939	KNOWN	protein_coding	OAZ3	chromosome:C_jacchus3.2.1:18:1:47448759:1	5780827	5789066	D	Callithrix jacchus ornithine decarboxylase antizyme 3 (OAZ3), mRNA. [Source:RefSeq mRNA;Acc:NM_001290218]
ENSCJAG00000019243	KNOWN_BY_PROJECTION	protein_coding	DUSP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	67421855	67424966	D	dual specificity phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:3064]
ENSCJAG00000005101	NOVEL	protein_coding	ENSCJAG00000005101	chromosome:C_jacchus3.2.1:5:1:159171411:1	114277095	114279390	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009313}  [Source:UniProtKB/TrEMBL;Acc:F7D6G3]
ENSCJAG00000011879	KNOWN_BY_PROJECTION	protein_coding	CSNK1E	chromosome:C_jacchus3.2.1:1:1:210400635:1	200748147	200857382	R	casein kinase 1, epsilon [Source:HGNC Symbol;Acc:HGNC:2453]
ENSCJAG00000005088	KNOWN_BY_PROJECTION	protein_coding	NKRF	chromosome:C_jacchus3.2.1:X:1:142054208:1	107662035	107679739	R	NFKB repressing factor [Source:HGNC Symbol;Acc:HGNC:19374]
ENSCJAG00000007955	KNOWN	protein_coding	TDRKH	chromosome:C_jacchus3.2.1:18:1:47448759:1	5789475	5809470	R	Tudor and KH domain containing isoform a (Predicted) {ECO:0000313|EMBL:ABY82106.1}; Tudor and KH domain-containing protein isoform a {ECO:0000313|EMBL:JAB08029.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014807}  [Source:UniProtKB/TrEMBL;Acc:B0KWD5]
ENSCJAG00000006093	KNOWN_BY_PROJECTION	protein_coding	NEMF	chromosome:C_jacchus3.2.1:10:1:132174527:1	74337186	74404860	R	nuclear export mediator factor [Source:HGNC Symbol;Acc:HGNC:10663]
ENSCJAG00000005022	KNOWN_BY_PROJECTION	protein_coding	SEPT6	chromosome:C_jacchus3.2.1:X:1:142054208:1	107689026	107777082	R	septin 6 [Source:HGNC Symbol;Acc:HGNC:15848]
ENSCJAG00000005019	KNOWN	protein_coding	ENSCJAG00000005019	chromosome:C_jacchus3.2.1:X:1:142054208:1	107877356	107883269	R	60S ribosomal protein L39 {ECO:0000313|EMBL:JAB24083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009150}  [Source:UniProtKB/TrEMBL;Acc:F7IQ68]
ENSCJAG00000005017	NOVEL	pseudogene	ENSCJAG00000005017	chromosome:C_jacchus3.2.1:X:1:142054208:1	107934154	107935469	R	<no descrition>
ENSCJAG00000004975	KNOWN_BY_PROJECTION	protein_coding	UPF3B	chromosome:C_jacchus3.2.1:X:1:142054208:1	107955014	107977907	R	UPF3 regulator of nonsense transcripts homolog B (yeast) [Source:HGNC Symbol;Acc:HGNC:20439]
ENSCJAG00000032772	NOVEL	protein_coding	ENSCJAG00000032772	chromosome:C_jacchus3.2.1:7:1:155834243:1	37569081	37585419	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043081}  [Source:UniProtKB/TrEMBL;Acc:F7HT41]
ENSCJAG00000033793	NOVEL	protein_coding	ENSCJAG00000033793	chromosome:C_jacchus3.2.1:7:1:155834243:1	37586108	37700631	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045933}  [Source:UniProtKB/TrEMBL;Acc:F6T1Y1]
ENSCJAG00000032527	KNOWN_BY_PROJECTION	protein_coding	HELZ	chromosome:C_jacchus3.2.1:5:1:159171411:1	114396194	114547306	D	helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
ENSCJAG00000002653	KNOWN_BY_PROJECTION	protein_coding	PRDM16	chromosome:C_jacchus3.2.1:7:1:155834243:1	37634834	37684928	D	PR domain containing 16 [Source:HGNC Symbol;Acc:HGNC:14000]
ENSCJAG00000019254	KNOWN_BY_PROJECTION	protein_coding	NEURL1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	67506744	67546195	R	neuralized E3 ubiquitin protein ligase 1B [Source:HGNC Symbol;Acc:HGNC:35422]
ENSCJAG00000032115	NOVEL	protein_coding	ENSCJAG00000032115	chromosome:C_jacchus3.2.1:7:1:155834243:1	37723627	37726082	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047631}  [Source:UniProtKB/TrEMBL;Acc:F7GXL5]
ENSCJAG00000002178	KNOWN_BY_PROJECTION	protein_coding	BRD4	chromosome:C_jacchus3.2.1:22:1:49145316:1	14396197	14413994	R	bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
ENSCJAG00000019258	KNOWN_BY_PROJECTION	protein_coding	SH3PXD2B	chromosome:C_jacchus3.2.1:2:1:204313951:1	67734731	67849918	D	SH3 and PX domains 2B [Source:HGNC Symbol;Acc:HGNC:29242]
ENSCJAG00000004972	KNOWN	protein_coding	NDUFA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	108003363	108008398	D	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 {ECO:0000313|EMBL:JAB06975.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009085}  [Source:UniProtKB/TrEMBL;Acc:F7HZE3]
ENSCJAG00000004955	KNOWN	protein_coding	AKAP14	chromosome:C_jacchus3.2.1:X:1:142054208:1	108028927	108054363	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009058}  [Source:UniProtKB/TrEMBL;Acc:F7I6E3]
ENSCJAG00000019267	KNOWN	protein_coding	UBTD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	67977175	68000022	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035755}  [Source:UniProtKB/TrEMBL;Acc:F7EV52]
ENSCJAG00000002676	KNOWN_BY_PROJECTION	protein_coding	MEGF6	chromosome:C_jacchus3.2.1:7:1:155834243:1	37753362	37871740	R	multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
ENSCJAG00000008023	KNOWN_BY_PROJECTION	protein_coding	RORC	chromosome:C_jacchus3.2.1:18:1:47448759:1	5825941	5854430	R	RAR-related orphan receptor C [Source:HGNC Symbol;Acc:HGNC:10260]
ENSCJAG00000004941	KNOWN_BY_PROJECTION	protein_coding	NKAP	chromosome:C_jacchus3.2.1:X:1:142054208:1	108064231	108078237	R	NFKB activating protein [Source:HGNC Symbol;Acc:HGNC:29873]
ENSCJAG00000002227	KNOWN	protein_coding	AKAP8L	chromosome:C_jacchus3.2.1:22:1:49145316:1	14475323	14549788	R	A-kinase anchor protein 8-like {ECO:0000313|EMBL:JAB05091.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004047}  [Source:UniProtKB/TrEMBL;Acc:F6Y6R8]
ENSCJAG00000019273	KNOWN_BY_PROJECTION	protein_coding	EFCAB9	chromosome:C_jacchus3.2.1:2:1:204313951:1	68010899	68018281	R	EF-hand calcium binding domain 9 [Source:HGNC Symbol;Acc:HGNC:34530]
ENSCJAG00000004938	KNOWN_BY_PROJECTION	protein_coding	RHOXF1	chromosome:C_jacchus3.2.1:X:1:142054208:1	108188864	108198197	D	Rhox homeobox family, member 1 [Source:HGNC Symbol;Acc:HGNC:29993]
ENSCJAG00000019274	NOVEL	pseudogene	ENSCJAG00000019274	chromosome:C_jacchus3.2.1:2:1:204313951:1	68070954	68072401	R	<no descrition>
ENSCJAG00000004932	NOVEL	pseudogene	ENSCJAG00000004932	chromosome:C_jacchus3.2.1:X:1:142054208:1	108221850	108223194	D	<no descrition>
ENSCJAG00000034541	NOVEL	pseudogene	ENSCJAG00000034541	chromosome:C_jacchus3.2.1:X:1:142054208:1	108225332	108225664	R	<no descrition>
ENSCJAG00000000361	KNOWN_BY_PROJECTION	protein_coding	CACNG1	chromosome:C_jacchus3.2.1:5:1:159171411:1	114566491	114581975	R	calcium channel, voltage-dependent, gamma subunit 1 [Source:HGNC Symbol;Acc:HGNC:1405]
ENSCJAG00000000358	KNOWN_BY_PROJECTION	protein_coding	CACNG4	chromosome:C_jacchus3.2.1:5:1:159171411:1	114591693	114602761	R	calcium channel, voltage-dependent, gamma subunit 4 [Source:HGNC Symbol;Acc:HGNC:1408]
ENSCJAG00000038011	KNOWN_BY_PROJECTION	protein_coding	CACNG5	chromosome:C_jacchus3.2.1:5:1:159171411:1	114739037	114742318	R	calcium channel, voltage-dependent, gamma subunit 5 [Source:HGNC Symbol;Acc:HGNC:1409]
ENSCJAG00000019275	KNOWN	protein_coding	STK10	chromosome:C_jacchus3.2.1:2:1:204313951:1	68075036	68254318	D	Serine/threonine-protein kinase 10 {ECO:0000313|EMBL:JAB19944.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035807}  [Source:UniProtKB/TrEMBL;Acc:F7HI69]
ENSCJAG00000002820	KNOWN	protein_coding	CEP104	chromosome:C_jacchus3.2.1:7:1:155834243:1	37794113	38120143	R	Centrosomal protein of 104 kDa {ECO:0000313|EMBL:JAB02166.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005136}  [Source:UniProtKB/TrEMBL;Acc:F7IJR5]
ENSCJAG00000000333	KNOWN_BY_PROJECTION	protein_coding	PRKCA	chromosome:C_jacchus3.2.1:5:1:159171411:1	114815421	115304569	R	protein kinase C, alpha [Source:HGNC Symbol;Acc:HGNC:9393]
ENSCJAG00000005998	KNOWN	protein_coding	SEC63	chromosome:C_jacchus3.2.1:4:1:171630274:1	107325016	107566651	R	SEC63-like protein (Predicted) {ECO:0000313|EMBL:ABY84157.1}; Translocation protein SEC63 homolog {ECO:0000313|EMBL:JAB15836.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011184}  [Source:UniProtKB/TrEMBL;Acc:B0KWH2]
ENSCJAG00000004920	NOVEL	protein_coding	ENSCJAG00000004920	chromosome:C_jacchus3.2.1:X:1:142054208:1	108241755	108247419	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008997}  [Source:UniProtKB/TrEMBL;Acc:F7I3B5]
ENSCJAG00000011954	NOVEL	pseudogene	ENSCJAG00000011954	chromosome:C_jacchus3.2.1:1:1:210400635:1	200818552	200819886	R	<no descrition>
ENSCJAG00000004915	KNOWN	protein_coding	ZBTB33	chromosome:C_jacchus3.2.1:X:1:142054208:1	108312463	108320101	D	Transcriptional regulator Kaiso {ECO:0000313|EMBL:JAB12932.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008969}  [Source:UniProtKB/TrEMBL;Acc:F7I3E0]
ENSCJAG00000011872	KNOWN	protein_coding	KDELR3	chromosome:C_jacchus3.2.1:1:1:210400635:1	200861746	200876971	D	ER lumen protein-retaining receptor {ECO:0000256|RuleBase:RU000634}  [Source:UniProtKB/TrEMBL;Acc:F6S5I7]
ENSCJAG00000004880	KNOWN_BY_PROJECTION	protein_coding	TMEM255A	chromosome:C_jacchus3.2.1:X:1:142054208:1	108320355	108364200	R	transmembrane protein 255A [Source:HGNC Symbol;Acc:HGNC:26086]
ENSCJAG00000008122	KNOWN_BY_PROJECTION	protein_coding	THEM5	chromosome:C_jacchus3.2.1:18:1:47448759:1	5877504	5884283	R	thioesterase superfamily member 5 [Source:HGNC Symbol;Acc:HGNC:26755]
ENSCJAG00000007646	KNOWN_BY_PROJECTION	protein_coding	THEM4	chromosome:C_jacchus3.2.1:18:1:47448759:1	5903588	5942899	R	thioesterase superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:17947]
ENSCJAG00000033551	NOVEL	protein_coding	ENSCJAG00000033551	chromosome:C_jacchus3.2.1:2:1:204313951:1	68260974	68261865	D	40S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}  [Source:UniProtKB/TrEMBL;Acc:F7I2H3]
ENSCJAG00000000354	NOVEL	pseudogene	ENSCJAG00000000354	chromosome:C_jacchus3.2.1:5:1:159171411:1	115033501	115034131	D	<no descrition>
ENSCJAG00000002212	KNOWN_BY_PROJECTION	protein_coding	AKAP8	chromosome:C_jacchus3.2.1:22:1:49145316:1	14497230	14517375	R	A kinase (PRKA) anchor protein 8 [Source:HGNC Symbol;Acc:HGNC:378]
ENSCJAG00000000327	KNOWN_BY_PROJECTION	protein_coding	APOH	chromosome:C_jacchus3.2.1:5:1:159171411:1	115374101	115390679	D	apolipoprotein H (beta-2-glycoprotein I) [Source:HGNC Symbol;Acc:HGNC:616]
ENSCJAG00000008136	NOVEL	protein_coding	ENSCJAG00000008136	chromosome:C_jacchus3.2.1:18:1:47448759:1	5939695	5941199	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015004}  [Source:UniProtKB/TrEMBL;Acc:F7GPX7]
ENSCJAG00000002255	KNOWN_BY_PROJECTION	protein_coding	PGLYRP2	chromosome:C_jacchus3.2.1:22:1:49145316:1	14536648	14612125	R	peptidoglycan recognition protein 2 [Source:HGNC Symbol;Acc:HGNC:30013]
ENSCJAG00000011797	KNOWN_BY_PROJECTION	protein_coding	DDX17	chromosome:C_jacchus3.2.1:1:1:210400635:1	200877996	200901134	R	DEAD (Asp-Glu-Ala-Asp) box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
ENSCJAG00000008139	NOVEL	protein_coding	ENSCJAG00000008139	chromosome:C_jacchus3.2.1:18:1:47448759:1	6022214	6034076	R	<no descrition>
ENSCJAG00000005113	NOVEL	protein_coding	ENSCJAG00000005113	chromosome:C_jacchus3.2.1:18:1:47448759:1	6062933	6064650	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009329}  [Source:UniProtKB/TrEMBL;Acc:F7D5T5]
ENSCJAG00000006380	NOVEL	protein_coding	ENSCJAG00000006380	chromosome:C_jacchus3.2.1:18:1:47448759:1	6086961	6105569	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011766}  [Source:UniProtKB/TrEMBL;Acc:F7FZV6]
ENSCJAG00000002638	KNOWN	protein_coding	LAMP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	108443934	108488924	R	Lysosome-associated membrane glycoprotein 2 isoform C {ECO:0000313|EMBL:JAB17884.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049114}  [Source:UniProtKB/TrEMBL;Acc:F7C0V3]
ENSCJAG00000006384	KNOWN	protein_coding	ENSCJAG00000006384	chromosome:C_jacchus3.2.1:18:1:47448759:1	6191767	6197326	R	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F7DD73]
ENSCJAG00000006396	KNOWN_BY_PROJECTION	protein_coding	TCHHL1	chromosome:C_jacchus3.2.1:18:1:47448759:1	6250905	6256132	R	trichohyalin-like 1 [Source:HGNC Symbol;Acc:HGNC:31796]
ENSCJAG00000002265	KNOWN	protein_coding	WIZ	chromosome:C_jacchus3.2.1:22:1:49145316:1	14552268	14580094	R	Protein Wiz {ECO:0000313|EMBL:JAB25060.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004098}  [Source:UniProtKB/TrEMBL;Acc:F6VS77]
ENSCJAG00000002752	KNOWN	protein_coding	TPRG1L	chromosome:C_jacchus3.2.1:7:1:155834243:1	37881934	37885582	D	Tumor protein p63-regulated gene 1-like protein {ECO:0000313|EMBL:JAB18291.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004993}  [Source:UniProtKB/TrEMBL;Acc:F7C1Z4]
ENSCJAG00000022925	KNOWN_BY_PROJECTION	protein_coding	ARF6	chromosome:C_jacchus3.2.1:10:1:132174527:1	74449359	74454220	D	ADP-ribosylation factor 6 [Source:HGNC Symbol;Acc:HGNC:659]
ENSCJAG00000000300	NOVEL	protein_coding	ENSCJAG00000000300	chromosome:C_jacchus3.2.1:5:1:159171411:1	115403738	116039444	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048986}  [Source:UniProtKB/TrEMBL;Acc:F6PLQ7]
ENSCJAG00000002291	KNOWN_BY_PROJECTION	protein_coding	RASAL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	14583032	14596461	R	RAS protein activator like 3 [Source:HGNC Symbol;Acc:HGNC:26129]
ENSCJAG00000002757	KNOWN_BY_PROJECTION	protein_coding	WRAP73	chromosome:C_jacchus3.2.1:7:1:155834243:1	37887319	37906040	R	WD repeat containing, antisense to TP73 [Source:HGNC Symbol;Acc:HGNC:12759]
ENSCJAG00000006089	KNOWN_BY_PROJECTION	protein_coding	OSTM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	107493097	107528660	R	osteopetrosis associated transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:21652]
ENSCJAG00000034138	NOVEL	protein_coding	ENSCJAG00000034138	chromosome:C_jacchus3.2.1:10:1:132174527:1	74662540	74663235	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F6T4Q0]
ENSCJAG00000010012	KNOWN_BY_PROJECTION	protein_coding	TCHH	chromosome:C_jacchus3.2.1:18:1:47448759:1	6278075	6361028	R	trichohyalin [Source:HGNC Symbol;Acc:HGNC:11791]
ENSCJAG00000006240	KNOWN	protein_coding	VCPKMT	chromosome:C_jacchus3.2.1:10:1:132174527:1	74666381	74675014	R	Methyltransferase-like protein 21D isoform a {ECO:0000313|EMBL:JAB10567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011493}  [Source:UniProtKB/TrEMBL;Acc:F7IKF8]
ENSCJAG00000019297	KNOWN	protein_coding	FBXW11	chromosome:C_jacchus3.2.1:2:1:204313951:1	68301788	68443934	D	F-box/WD repeat-containing protein 11 isoform C {ECO:0000313|EMBL:JAB26175.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035869}  [Source:UniProtKB/TrEMBL;Acc:F7GX48]
ENSCJAG00000031716	KNOWN_BY_PROJECTION	protein_coding	RPTN	chromosome:C_jacchus3.2.1:18:1:47448759:1	6316942	6328349	R	repetin [Source:HGNC Symbol;Acc:HGNC:26809]
ENSCJAG00000033687	KNOWN_BY_PROJECTION	protein_coding	HRNR	chromosome:C_jacchus3.2.1:18:1:47448759:1	6378799	6389685	R	hornerin [Source:HGNC Symbol;Acc:HGNC:20846]
ENSCJAG00000006405	KNOWN_BY_PROJECTION	protein_coding	FLG	chromosome:C_jacchus3.2.1:18:1:47448759:1	6428171	6437050	R	filaggrin [Source:HGNC Symbol;Acc:HGNC:3748]
ENSCJAG00000005966	KNOWN_BY_PROJECTION	protein_coding	NR2E1	chromosome:C_jacchus3.2.1:4:1:171630274:1	107619945	107643683	D	nuclear receptor subfamily 2, group E, member 1 [Source:HGNC Symbol;Acc:HGNC:7973]
ENSCJAG00000006449	NOVEL	protein_coding	ENSCJAG00000006449	chromosome:C_jacchus3.2.1:18:1:47448759:1	6457290	6459118	R	<no descrition>
ENSCJAG00000006453	NOVEL	pseudogene	ENSCJAG00000006453	chromosome:C_jacchus3.2.1:18:1:47448759:1	6526053	6526344	D	<no descrition>
ENSCJAG00000002652	NOVEL	pseudogene	ENSCJAG00000002652	chromosome:C_jacchus3.2.1:X:1:142054208:1	108476577	108476976	D	<no descrition>
ENSCJAG00000019320	NOVEL	pseudogene	ENSCJAG00000019320	chromosome:C_jacchus3.2.1:2:1:204313951:1	68449744	68450584	D	<no descrition>
ENSCJAG00000006455	KNOWN_BY_PROJECTION	protein_coding	CRNN	chromosome:C_jacchus3.2.1:18:1:47448759:1	6530035	6535210	R	cornulin [Source:HGNC Symbol;Acc:HGNC:1230]
ENSCJAG00000011766	KNOWN_BY_PROJECTION	protein_coding	DMC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	200914134	200958278	R	DNA meiotic recombinase 1 [Source:HGNC Symbol;Acc:HGNC:2927]
ENSCJAG00000000325	NOVEL	protein_coding	ENSCJAG00000000325	chromosome:C_jacchus3.2.1:5:1:159171411:1	116030082	116031926	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052231}  [Source:UniProtKB/TrEMBL;Acc:F7ILF3]
ENSCJAG00000032206	NOVEL	protein_coding	ENSCJAG00000032206	chromosome:C_jacchus3.2.1:5:1:159171411:1	116187159	116188002	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043944}  [Source:UniProtKB/TrEMBL;Acc:F7HKY9]
ENSCJAG00000004669	NOVEL	protein_coding	ENSCJAG00000004669	chromosome:C_jacchus3.2.1:5:1:159171411:1	116239283	116240562	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048570}  [Source:UniProtKB/TrEMBL;Acc:F7EW37]
ENSCJAG00000017697	NOVEL	protein_coding	ENSCJAG00000017697	chromosome:C_jacchus3.2.1:18:1:47448759:1	6617165	6618984	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032614}  [Source:UniProtKB/TrEMBL;Acc:F7ER55]
ENSCJAG00000034012	NOVEL	pseudogene	ENSCJAG00000034012	chromosome:C_jacchus3.2.1:5:1:159171411:1	116268244	116268844	R	<no descrition>
ENSCJAG00000031263	NOVEL	protein_coding	ENSCJAG00000031263	chromosome:C_jacchus3.2.1:18:1:47448759:1	6701490	6736752	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030528}  [Source:UniProtKB/TrEMBL;Acc:F6Y4J4]
ENSCJAG00000002596	KNOWN	protein_coding	CUL4B	chromosome:C_jacchus3.2.1:X:1:142054208:1	108546277	108582293	R	Cullin-4B isoform 2 {ECO:0000313|EMBL:JAB07367.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004775}  [Source:UniProtKB/TrEMBL;Acc:F7ALT1]
ENSCJAG00000002773	KNOWN_BY_PROJECTION	protein_coding	TP73	chromosome:C_jacchus3.2.1:7:1:155834243:1	37970413	37999048	D	tumor protein p73 [Source:HGNC Symbol;Acc:HGNC:12003]
ENSCJAG00000002791	KNOWN_BY_PROJECTION	protein_coding	CCDC27	chromosome:C_jacchus3.2.1:7:1:155834243:1	38017443	38036971	D	coiled-coil domain containing 27 [Source:HGNC Symbol;Acc:HGNC:26546]
ENSCJAG00000019324	KNOWN_BY_PROJECTION	protein_coding	SMIM23	chromosome:C_jacchus3.2.1:2:1:204313951:1	68514021	68534176	R	small integral membrane protein 23 [Source:HGNC Symbol;Acc:HGNC:34440]
ENSCJAG00000019326	NOVEL	pseudogene	ENSCJAG00000019326	chromosome:C_jacchus3.2.1:2:1:204313951:1	68758561	68759138	D	<no descrition>
ENSCJAG00000019329	KNOWN	protein_coding	FGF18	chromosome:C_jacchus3.2.1:2:1:204313951:1	68896397	68934269	R	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F7GS18]
ENSCJAG00000011747	KNOWN_BY_PROJECTION	protein_coding	FAM227A	chromosome:C_jacchus3.2.1:1:1:210400635:1	200963218	201026390	R	family with sequence similarity 227, member A [Source:HGNC Symbol;Acc:HGNC:44197]
ENSCJAG00000000267	KNOWN_BY_PROJECTION	protein_coding	RGS9	chromosome:C_jacchus3.2.1:5:1:159171411:1	116387440	116480905	R	regulator of G-protein signaling 9 [Source:HGNC Symbol;Acc:HGNC:10004]
ENSCJAG00000002819	KNOWN_BY_PROJECTION	protein_coding	LRRC47	chromosome:C_jacchus3.2.1:7:1:155834243:1	38045842	38061426	R	leucine rich repeat containing 47 [Source:HGNC Symbol;Acc:HGNC:29207]
ENSCJAG00000011737	KNOWN_BY_PROJECTION	protein_coding	CBY1	chromosome:C_jacchus3.2.1:1:1:210400635:1	201026795	201041275	D	chibby homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:1307]
ENSCJAG00000000380	KNOWN_BY_PROJECTION	protein_coding	CYP4F12	chromosome:C_jacchus3.2.1:22:1:49145316:1	14596550	14869564	D	cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:HGNC:18857]
ENSCJAG00000002834	KNOWN	protein_coding	DFFB	chromosome:C_jacchus3.2.1:7:1:155834243:1	38120402	38151272	D	DNAation factor subunit beta {ECO:0000313|EMBL:JAB10949.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005204}  [Source:UniProtKB/TrEMBL;Acc:F7I365]
ENSCJAG00000011731	KNOWN	protein_coding	ENSCJAG00000011731	chromosome:C_jacchus3.2.1:1:1:210400635:1	201047481	201049958	D	Mitochondrial import receptor subunit TOM22 homolog {ECO:0000313|EMBL:JAB08089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021545}  [Source:UniProtKB/TrEMBL;Acc:F6U2R4]
ENSCJAG00000011713	KNOWN	protein_coding	JOSD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	201052812	201065180	R	Josephin-1 {ECO:0000313|EMBL:JAB32820.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021532}  [Source:UniProtKB/TrEMBL;Acc:F6PIG1]
ENSCJAG00000002869	KNOWN	protein_coding	C1ORF174	chromosome:C_jacchus3.2.1:7:1:155834243:1	38157316	38172156	R	UPF0688 protein C1orf174 {ECO:0000313|EMBL:JAB05392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005228}  [Source:UniProtKB/TrEMBL;Acc:F7I345]
ENSCJAG00000017416	NOVEL	pseudogene	ENSCJAG00000017416	chromosome:C_jacchus3.2.1:7:1:155834243:1	38256227	38256950	R	<no descrition>
ENSCJAG00000019334	KNOWN	protein_coding	ENSCJAG00000019334	chromosome:C_jacchus3.2.1:2:1:204313951:1	68943299	68959993	R	Nucleophosmin isoform 1 {ECO:0000313|EMBL:JAB19490.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035924}  [Source:UniProtKB/TrEMBL;Acc:F7FL37]
ENSCJAG00000016606	NOVEL	protein_coding	ENSCJAG00000016606	chromosome:C_jacchus3.2.1:18:1:47448759:1	6720861	6931737	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047901}  [Source:UniProtKB/TrEMBL;Acc:F7FKZ8]
ENSCJAG00000011652	KNOWN_BY_PROJECTION	protein_coding	GTPBP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	201070575	201096868	D	GTP binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4669]
ENSCJAG00000036359	NOVEL	protein_coding	ENSCJAG00000036359	chromosome:C_jacchus3.2.1:18:1:47448759:1	6784406	6796153	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044358}  [Source:UniProtKB/TrEMBL;Acc:F7FJI2]
ENSCJAG00000021128	KNOWN_BY_PROJECTION	protein_coding	KPRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	6843469	6847457	D	keratinocyte proline-rich protein [Source:HGNC Symbol;Acc:HGNC:31823]
ENSCJAG00000035401	NOVEL	protein_coding	ENSCJAG00000035401	chromosome:C_jacchus3.2.1:18:1:47448759:1	6864641	6865682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018368}  [Source:UniProtKB/TrEMBL;Acc:F7DI31]
ENSCJAG00000032268	NOVEL	protein_coding	ENSCJAG00000032268	chromosome:C_jacchus3.2.1:18:1:47448759:1	6945767	6946876	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031338}  [Source:UniProtKB/TrEMBL;Acc:F7HW90]
ENSCJAG00000034851	NOVEL	protein_coding	ENSCJAG00000034851	chromosome:C_jacchus3.2.1:18:1:47448759:1	6952617	6953731	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020737}  [Source:UniProtKB/TrEMBL;Acc:F7H175]
ENSCJAG00000012020	KNOWN_BY_PROJECTION	protein_coding	SMCP	chromosome:C_jacchus3.2.1:18:1:47448759:1	6985848	6992725	D	sperm mitochondria-associated cysteine-rich protein [Source:HGNC Symbol;Acc:HGNC:6962]
ENSCJAG00000026490	KNOWN_BY_PROJECTION	protein_coding	AJAP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	38927532	39063104	D	adherens junctions associated protein 1 [Source:HGNC Symbol;Acc:HGNC:30801]
ENSCJAG00000012034	KNOWN_BY_PROJECTION	protein_coding	IVL	chromosome:C_jacchus3.2.1:18:1:47448759:1	7019771	7021902	D	involucrin [Source:HGNC Symbol;Acc:HGNC:6187]
ENSCJAG00000037096	KNOWN_BY_PROJECTION	protein_coding	SPRR4	chromosome:C_jacchus3.2.1:18:1:47448759:1	7076038	7078479	D	small proline-rich protein 4 [Source:HGNC Symbol;Acc:HGNC:23173]
ENSCJAG00000034901	NOVEL	protein_coding	ENSCJAG00000034901	chromosome:C_jacchus3.2.1:7:1:155834243:1	40004891	40011086	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050061}  [Source:UniProtKB/TrEMBL;Acc:F7FD39]
ENSCJAG00000012049	KNOWN	protein_coding	SPRR1B	chromosome:C_jacchus3.2.1:18:1:47448759:1	7077730	7126595	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038040}  [Source:UniProtKB/TrEMBL;Acc:F7HKE6]
ENSCJAG00000002593	KNOWN	protein_coding	MCTS1	chromosome:C_jacchus3.2.1:X:1:142054208:1	108621235	108630328	D	Malignant T-cell-amplified sequence {ECO:0000256|PIRNR:PIRNR005067}  [Source:UniProtKB/TrEMBL;Acc:F7GTQ4]
ENSCJAG00000002590	KNOWN	protein_coding	C1GALT1C1	chromosome:C_jacchus3.2.1:X:1:142054208:1	108643581	108647756	R	C1GALT1-specific chaperone 1 {ECO:0000313|EMBL:JAB07615.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004695}  [Source:UniProtKB/TrEMBL;Acc:F6W6E5]
ENSCJAG00000012057	NOVEL	protein_coding	ENSCJAG00000012057	chromosome:C_jacchus3.2.1:18:1:47448759:1	7149380	7164764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048396}  [Source:UniProtKB/TrEMBL;Acc:F7G1P7]
ENSCJAG00000002579	NOVEL	protein_coding	ENSCJAG00000002579	chromosome:C_jacchus3.2.1:X:1:142054208:1	108909717	108911742	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004685}  [Source:UniProtKB/TrEMBL;Acc:F6W7G4]
ENSCJAG00000037822	NOVEL	protein_coding	ENSCJAG00000037822	chromosome:C_jacchus3.2.1:18:1:47448759:1	7163381	7172654	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041480}  [Source:UniProtKB/TrEMBL;Acc:F7H071]
ENSCJAG00000022918	KNOWN_BY_PROJECTION	protein_coding	LELP1	chromosome:C_jacchus3.2.1:18:1:47448759:1	7208462	7210147	D	late cornified envelope-like proline-rich 1 [Source:HGNC Symbol;Acc:HGNC:32046]
ENSCJAG00000033188	NOVEL	pseudogene	ENSCJAG00000033188	chromosome:C_jacchus3.2.1:X:1:142054208:1	109557462	109558441	R	<no descrition>
ENSCJAG00000000076	KNOWN_BY_PROJECTION	protein_coding	NPHP4	chromosome:C_jacchus3.2.1:7:1:155834243:1	40199464	40335557	R	nephronophthisis 4 [Source:HGNC Symbol;Acc:HGNC:19104]
ENSCJAG00000006256	KNOWN_BY_PROJECTION	protein_coding	SOS2	chromosome:C_jacchus3.2.1:10:1:132174527:1	74675564	74840175	R	son of sevenless homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11188]
ENSCJAG00000005866	KNOWN_BY_PROJECTION	protein_coding	PGLYRP4	chromosome:C_jacchus3.2.1:18:1:47448759:1	7269027	7319322	R	peptidoglycan recognition protein 4 [Source:HGNC Symbol;Acc:HGNC:30015]
ENSCJAG00000016110	KNOWN_BY_PROJECTION	protein_coding	GRIA3	chromosome:C_jacchus3.2.1:X:1:142054208:1	111059869	111380358	D	glutamate receptor, ionotropic, AMPA 3 [Source:HGNC Symbol;Acc:HGNC:4573]
ENSCJAG00000036601	KNOWN_BY_PROJECTION	protein_coding	PGLYRP3	chromosome:C_jacchus3.2.1:18:1:47448759:1	7269330	7283808	R	peptidoglycan recognition protein 3 [Source:HGNC Symbol;Acc:HGNC:30014]
ENSCJAG00000005864	KNOWN_BY_PROJECTION	protein_coding	S100A9	chromosome:C_jacchus3.2.1:18:1:47448759:1	7327639	7335870	D	S100 calcium binding protein A9 [Source:HGNC Symbol;Acc:HGNC:10499]
ENSCJAG00000000265	KNOWN	protein_coding	GNA13	chromosome:C_jacchus3.2.1:5:1:159171411:1	116562252	116605664	D	Guanine nucleotide-binding protein subunit alpha-13 {ECO:0000313|EMBL:JAB04269.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000442}  [Source:UniProtKB/TrEMBL;Acc:F7FP92]
ENSCJAG00000005847	KNOWN	protein_coding	S100A12	chromosome:C_jacchus3.2.1:18:1:47448759:1	7345972	7347833	R	Protein S100-A12 {ECO:0000313|EMBL:JAB01632.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010738}  [Source:UniProtKB/TrEMBL;Acc:F7IHR9]
ENSCJAG00000019360	NOVEL	protein_coding	ENSCJAG00000019360	chromosome:C_jacchus3.2.1:2:1:204313951:1	69036438	69038854	R	<no descrition>
ENSCJAG00000005955	KNOWN_BY_PROJECTION	protein_coding	SNX3	chromosome:C_jacchus3.2.1:4:1:171630274:1	107667753	107766762	R	sorting nexin 3 [Source:HGNC Symbol;Acc:HGNC:11174]
ENSCJAG00000011606	KNOWN_BY_PROJECTION	protein_coding	SUN2	chromosome:C_jacchus3.2.1:1:1:210400635:1	201102692	201125599	R	Sad1 and UNC84 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:14210]
ENSCJAG00000000254	KNOWN	protein_coding	AMZ2	chromosome:C_jacchus3.2.1:5:1:159171411:1	116643806	116655151	D	Archaemetzincin-2 isoform 1 {ECO:0000313|EMBL:JAB09152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000437}  [Source:UniProtKB/TrEMBL;Acc:F7FPH8]
ENSCJAG00000033160	NOVEL	pseudogene	ENSCJAG00000033160	chromosome:C_jacchus3.2.1:4:1:171630274:1	107743831	107744446	D	<no descrition>
ENSCJAG00000005947	KNOWN	protein_coding	LACE1	chromosome:C_jacchus3.2.1:4:1:171630274:1	107808667	108062423	D	Lactation elevated protein 1 {ECO:0000313|EMBL:JAB41404.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010932}  [Source:UniProtKB/TrEMBL;Acc:F7IHN8]
ENSCJAG00000011587	KNOWN	protein_coding	DNAL4	chromosome:C_jacchus3.2.1:1:1:210400635:1	201153549	201168550	R	Dynein light chain 4, axonemal {ECO:0000313|EMBL:JAB05911.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021300}  [Source:UniProtKB/TrEMBL;Acc:F6Q578]
ENSCJAG00000005929	KNOWN	protein_coding	FOXO3	chromosome:C_jacchus3.2.1:4:1:171630274:1	108103144	108225229	D	Forkhead box protein O3 {ECO:0000313|EMBL:JAB06838.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010922}  [Source:UniProtKB/TrEMBL;Acc:F7IHR2]
ENSCJAG00000011584	KNOWN_BY_PROJECTION	protein_coding	NPTXR	chromosome:C_jacchus3.2.1:1:1:210400635:1	201193536	201216988	R	neuronal pentraxin receptor [Source:HGNC Symbol;Acc:HGNC:7954]
ENSCJAG00000005843	KNOWN_BY_PROJECTION	protein_coding	S100A8	chromosome:C_jacchus3.2.1:18:1:47448759:1	7365774	7366792	R	S100 calcium binding protein A8 [Source:HGNC Symbol;Acc:HGNC:10498]
ENSCJAG00000032518	KNOWN_BY_PROJECTION	protein_coding	CBX6	chromosome:C_jacchus3.2.1:1:1:210400635:1	201241878	201247104	R	chromobox homolog 6 [Source:HGNC Symbol;Acc:HGNC:1556]
ENSCJAG00000005840	NOVEL	protein_coding	ENSCJAG00000005840	chromosome:C_jacchus3.2.1:18:1:47448759:1	7372592	7375474	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010714}  [Source:UniProtKB/TrEMBL;Acc:F7IHW1]
ENSCJAG00000011578	NOVEL	protein_coding	ENSCJAG00000011578	chromosome:C_jacchus3.2.1:1:1:210400635:1	201307364	201310494	D	<no descrition>
ENSCJAG00000005835	NOVEL	protein_coding	ENSCJAG00000005835	chromosome:C_jacchus3.2.1:18:1:47448759:1	7385131	7387951	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045287}  [Source:UniProtKB/TrEMBL;Acc:F6Q5U9]
ENSCJAG00000003619	NOVEL	protein_coding	ENSCJAG00000003619	chromosome:C_jacchus3.2.1:1:1:210400635:1	201322179	201337953	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006565}  [Source:UniProtKB/TrEMBL;Acc:F7EC92]
ENSCJAG00000000362	NOVEL	protein_coding	ENSCJAG00000000362	chromosome:C_jacchus3.2.1:22:1:49145316:1	14928887	14947490	R	<no descrition>
ENSCJAG00000009092	KNOWN	protein_coding	S100A6	chromosome:C_jacchus3.2.1:18:1:47448759:1	7446112	7447964	R	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F6W664]
ENSCJAG00000009089	KNOWN_BY_PROJECTION	protein_coding	S100A5	chromosome:C_jacchus3.2.1:18:1:47448759:1	7448832	7453138	R	S100 calcium binding protein A5 [Source:HGNC Symbol;Acc:HGNC:10495]
ENSCJAG00000009082	KNOWN	protein_coding	S100A4	chromosome:C_jacchus3.2.1:18:1:47448759:1	7455392	7457535	R	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F6XCP7]
ENSCJAG00000019368	KNOWN_BY_PROJECTION	protein_coding	RANBP17	chromosome:C_jacchus3.2.1:2:1:204313951:1	69048306	69494469	R	RAN binding protein 17 [Source:HGNC Symbol;Acc:HGNC:14428]
ENSCJAG00000009069	KNOWN_BY_PROJECTION	protein_coding	S100A3	chromosome:C_jacchus3.2.1:18:1:47448759:1	7459960	7460676	R	S100 calcium binding protein A3 [Source:HGNC Symbol;Acc:HGNC:10493]
ENSCJAG00000011366	KNOWN_BY_PROJECTION	protein_coding	PDGFB	chromosome:C_jacchus3.2.1:1:1:210400635:1	201382269	201403116	R	platelet-derived growth factor beta polypeptide [Source:HGNC Symbol;Acc:HGNC:8800]
ENSCJAG00000009055	KNOWN	protein_coding	S100A2	chromosome:C_jacchus3.2.1:18:1:47448759:1	7476246	7480961	R	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F6YM10]
ENSCJAG00000009052	NOVEL	protein_coding	ENSCJAG00000009052	chromosome:C_jacchus3.2.1:18:1:47448759:1	7488748	7489499	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016580}  [Source:UniProtKB/TrEMBL;Acc:F7A4F0]
ENSCJAG00000009051	NOVEL	protein_coding	ENSCJAG00000009051	chromosome:C_jacchus3.2.1:18:1:47448759:1	7501238	7504213	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016569}  [Source:UniProtKB/TrEMBL;Acc:F7AM58]
ENSCJAG00000000085	NOVEL	protein_coding	ENSCJAG00000000085	chromosome:C_jacchus3.2.1:7:1:155834243:1	40230472	40231534	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000150}  [Source:UniProtKB/TrEMBL;Acc:F7EJ07]
ENSCJAG00000009046	KNOWN	protein_coding	S100A16	chromosome:C_jacchus3.2.1:18:1:47448759:1	7526507	7528652	R	Protein S100-A16 {ECO:0000313|EMBL:JAB11857.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016566}  [Source:UniProtKB/TrEMBL;Acc:F7AMA4]
ENSCJAG00000010426	KNOWN_BY_PROJECTION	protein_coding	S100A14	chromosome:C_jacchus3.2.1:18:1:47448759:1	7532820	7533682	R	S100 calcium binding protein A14 [Source:HGNC Symbol;Acc:HGNC:18901]
ENSCJAG00000005915	KNOWN_BY_PROJECTION	protein_coding	ARMC2	chromosome:C_jacchus3.2.1:4:1:171630274:1	108386922	108519276	D	armadillo repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:23045]
ENSCJAG00000000248	KNOWN	protein_coding	SLC16A6	chromosome:C_jacchus3.2.1:5:1:159171411:1	116667028	116687480	R	Monocarboxylate transporter 7 {ECO:0000313|EMBL:JAB21286.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000418}  [Source:UniProtKB/TrEMBL;Acc:F7G1I2]
ENSCJAG00000010417	KNOWN_BY_PROJECTION	protein_coding	S100A13	chromosome:C_jacchus3.2.1:18:1:47448759:1	7537982	7550129	R	S100 calcium binding protein A13 [Source:HGNC Symbol;Acc:HGNC:10490]
ENSCJAG00000010407	KNOWN	protein_coding	S100A1	chromosome:C_jacchus3.2.1:18:1:47448759:1	7549966	7554803	D	Protein S100 {ECO:0000256|RuleBase:RU361184}  [Source:UniProtKB/TrEMBL;Acc:F6QF56]
ENSCJAG00000000244	KNOWN_BY_PROJECTION	protein_coding	ARSG	chromosome:C_jacchus3.2.1:5:1:159171411:1	116703744	116805644	D	arylsulfatase G [Source:HGNC Symbol;Acc:HGNC:24102]
ENSCJAG00000014135	NOVEL	protein_coding	ENSCJAG00000014135	chromosome:C_jacchus3.2.1:22:1:49145316:1	15038407	15068946	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026002}  [Source:UniProtKB/TrEMBL;Acc:F7I2I6]
ENSCJAG00000010383	KNOWN_BY_PROJECTION	protein_coding	CHTOP	chromosome:C_jacchus3.2.1:18:1:47448759:1	7557493	7571900	D	chromatin target of PRMT1 [Source:HGNC Symbol;Acc:HGNC:24511]
ENSCJAG00000014120	KNOWN	protein_coding	RAB8A	chromosome:C_jacchus3.2.1:22:1:49145316:1	15084797	15110474	D	Ras-related protein Rab-8A {ECO:0000313|EMBL:JAB07060.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025975}  [Source:UniProtKB/TrEMBL;Acc:F6UPD4]
ENSCJAG00000014114	KNOWN_BY_PROJECTION	protein_coding	HSH2D	chromosome:C_jacchus3.2.1:22:1:49145316:1	15137565	15145413	D	hematopoietic SH2 domain containing [Source:HGNC Symbol;Acc:HGNC:24920]
ENSCJAG00000000086	KNOWN_BY_PROJECTION	protein_coding	KCNAB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	40335806	40449908	D	potassium channel, voltage gated subfamily A regulatory beta subunit 2 [Source:HGNC Symbol;Acc:HGNC:6229]
ENSCJAG00000014103	KNOWN_BY_PROJECTION	protein_coding	CIB3	chromosome:C_jacchus3.2.1:22:1:49145316:1	15148212	15159142	R	calcium and integrin binding family member 3 [Source:HGNC Symbol;Acc:HGNC:24580]
ENSCJAG00000000236	KNOWN	protein_coding	WIPI1	chromosome:C_jacchus3.2.1:5:1:159171411:1	116806048	116845112	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000396}; WD repeat domain phosphoinositide-interacting protein 1 {ECO:0000313|EMBL:JAB01744.1}  [Source:UniProtKB/TrEMBL;Acc:F7H3C8]
ENSCJAG00000006308	KNOWN_BY_PROJECTION	protein_coding	L2HGDH	chromosome:C_jacchus3.2.1:10:1:132174527:1	74821180	74890547	R	L-2-hydroxyglutarate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:20499]
ENSCJAG00000016157	KNOWN	protein_coding	THOC2	chromosome:C_jacchus3.2.1:X:1:142054208:1	111473913	111626219	R	THO complex subunit 2 {ECO:0000313|EMBL:JAB18240.1, ECO:0000313|Ensembl:ENSCJAP00000032404}  [Source:UniProtKB/TrEMBL;Acc:F7ESC3]
ENSCJAG00000014097	KNOWN	protein_coding	FAM32A	chromosome:C_jacchus3.2.1:22:1:49145316:1	15174520	15180458	D	Callithrix jacchus family with sequence similarity 32, member A (FAM32A), mRNA. [Source:RefSeq mRNA;Acc:NM_001253785]
ENSCJAG00000034681	NOVEL	protein_coding	ENSCJAG00000034681	chromosome:C_jacchus3.2.1:10:1:132174527:1	74822738	74823313	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048647}  [Source:UniProtKB/TrEMBL;Acc:F6TAT9]
ENSCJAG00000010373	KNOWN	protein_coding	SNAPIN	chromosome:C_jacchus3.2.1:18:1:47448759:1	7584242	7588637	D	SNARE-associated protein Snapin {ECO:0000313|EMBL:JAB03719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019114}  [Source:UniProtKB/TrEMBL;Acc:F6RYC6]
ENSCJAG00000004636	KNOWN_BY_PROJECTION	protein_coding	SLC25A17	chromosome:C_jacchus3.2.1:1:1:210400635:1	201471164	201498631	R	solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 [Source:HGNC Symbol;Acc:HGNC:10987]
ENSCJAG00000014070	KNOWN_BY_PROJECTION	protein_coding	AP1M1	chromosome:C_jacchus3.2.1:22:1:49145316:1	15186903	15224762	D	adaptor-related protein complex 1, mu 1 subunit [Source:HGNC Symbol;Acc:HGNC:13667]
ENSCJAG00000031218	NOVEL	pseudogene	ENSCJAG00000031218	chromosome:C_jacchus3.2.1:X:1:142054208:1	111560156	111561152	D	<no descrition>
ENSCJAG00000004644	KNOWN	protein_coding	ST13	chromosome:C_jacchus3.2.1:1:1:210400635:1	201529517	201563082	R	Hsc70-interacting protein {ECO:0000313|EMBL:JAB19155.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008557}  [Source:UniProtKB/TrEMBL;Acc:F7HT98]
ENSCJAG00000010264	KNOWN	protein_coding	ILF2	chromosome:C_jacchus3.2.1:18:1:47448759:1	7588850	7600192	R	Interleukin enhancer-binding factor 2 isoform 1 {ECO:0000313|EMBL:JAB05199.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019103}  [Source:UniProtKB/TrEMBL;Acc:F6S8I9]
ENSCJAG00000020553	KNOWN	protein_coding	BIRC4	chromosome:C_jacchus3.2.1:X:1:142054208:1	111759093	111883435	D	Baculoviral IAP repeat-containing 4 (Predicted) {ECO:0000313|EMBL:ABY90125.1}; E3 ubiquitin-protein ligase XIAP {ECO:0000313|EMBL:JAB18552.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038194}  [Source:UniProtKB/TrEMBL;Acc:B0KWH9]
ENSCJAG00000006325	KNOWN_BY_PROJECTION	protein_coding	ATP5S	chromosome:C_jacchus3.2.1:10:1:132174527:1	74900262	74916011	D	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B) [Source:HGNC Symbol;Acc:HGNC:18799]
ENSCJAG00000006334	KNOWN	protein_coding	CDKL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	74910662	74981705	R	Cyclin-dependent kinase-like 1 {ECO:0000313|EMBL:JAB09181.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011703}  [Source:UniProtKB/TrEMBL;Acc:F7GM77]
ENSCJAG00000004718	KNOWN	protein_coding	XPNPEP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	201563549	201636898	D	Putative Xaa-Pro aminopeptidase 3 isoform 1 {ECO:0000313|EMBL:JAB03186.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008645}  [Source:UniProtKB/TrEMBL;Acc:F7IF92]
ENSCJAG00000006357	KNOWN_BY_PROJECTION	protein_coding	MAP4K5	chromosome:C_jacchus3.2.1:10:1:132174527:1	75004230	75124632	R	mitogen-activated protein kinase kinase kinase kinase 5 [Source:HGNC Symbol;Acc:HGNC:6867]
ENSCJAG00000000214	KNOWN	protein_coding	PRKAR1A	chromosome:C_jacchus3.2.1:5:1:159171411:1	116894557	116915509	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047813}; cAMP-dependent protein kinase type I-alpha regulatory subunit {ECO:0000313|EMBL:JAB08761.1}  [Source:UniProtKB/TrEMBL;Acc:F7H7M3]
ENSCJAG00000000101	KNOWN_BY_PROJECTION	protein_coding	CHD5	chromosome:C_jacchus3.2.1:7:1:155834243:1	40457835	40533134	R	chromodomain helicase DNA binding protein 5 [Source:HGNC Symbol;Acc:HGNC:16816]
ENSCJAG00000000202	KNOWN_BY_PROJECTION	protein_coding	FAM20A	chromosome:C_jacchus3.2.1:5:1:159171411:1	116920104	116983255	R	family with sequence similarity 20, member A [Source:HGNC Symbol;Acc:HGNC:23015]
ENSCJAG00000004759	KNOWN_BY_PROJECTION	protein_coding	DNAJB7	chromosome:C_jacchus3.2.1:1:1:210400635:1	201570477	201571714	R	DnaJ (Hsp40) homolog, subfamily B, member 7 [Source:HGNC Symbol;Acc:HGNC:24986]
ENSCJAG00000032218	NOVEL	protein_coding	ENSCJAG00000032218	chromosome:C_jacchus3.2.1:1:1:210400635:1	201613967	201614814	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042517}  [Source:UniProtKB/TrEMBL;Acc:F6XG11]
ENSCJAG00000004761	NOVEL	pseudogene	ENSCJAG00000004761	chromosome:C_jacchus3.2.1:1:1:210400635:1	201653436	201653956	R	<no descrition>
ENSCJAG00000014063	KNOWN_BY_PROJECTION	protein_coding	KLF2	chromosome:C_jacchus3.2.1:22:1:49145316:1	15316886	15320869	D	Kruppel-like factor 2 [Source:HGNC Symbol;Acc:HGNC:6347]
ENSCJAG00000020559	KNOWN_BY_PROJECTION	protein_coding	STAG2	chromosome:C_jacchus3.2.1:X:1:142054208:1	111876538	112025449	D	stromal antigen 2 [Source:HGNC Symbol;Acc:HGNC:11355]
ENSCJAG00000004763	KNOWN	protein_coding	RBX1	chromosome:C_jacchus3.2.1:1:1:210400635:1	201660052	201676808	D	E3 ubiquitin-protein ligase RBX1 {ECO:0000313|EMBL:JAB02308.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008669}  [Source:UniProtKB/TrEMBL;Acc:F7IAL1]
ENSCJAG00000004770	KNOWN_BY_PROJECTION	protein_coding	EP300	chromosome:C_jacchus3.2.1:1:1:210400635:1	201773750	201862810	D	E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
ENSCJAG00000000190	KNOWN_BY_PROJECTION	protein_coding	ABCA8	chromosome:C_jacchus3.2.1:5:1:159171411:1	117219285	117316383	R	ATP-binding cassette, sub-family A (ABC1), member 8 [Source:HGNC Symbol;Acc:HGNC:38]
ENSCJAG00000000132	KNOWN_BY_PROJECTION	protein_coding	RPL22	chromosome:C_jacchus3.2.1:7:1:155834243:1	40541745	40575656	R	ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:10315]
ENSCJAG00000000135	KNOWN_BY_PROJECTION	protein_coding	APITD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	40550618	40565991	D	apoptosis-inducing, TAF9-like domain 1 [Source:HGNC Symbol;Acc:HGNC:23163]
ENSCJAG00000013985	KNOWN_BY_PROJECTION	protein_coding	EPS15L1	chromosome:C_jacchus3.2.1:22:1:49145316:1	15349450	15473821	R	epidermal growth factor receptor pathway substrate 15-like 1 [Source:HGNC Symbol;Acc:HGNC:24634]
ENSCJAG00000004817	KNOWN_BY_PROJECTION	protein_coding	L3MBTL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	201904658	201924724	D	l(3)mbt-like 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:18594]
ENSCJAG00000000142	KNOWN_BY_PROJECTION	protein_coding	RNF207	chromosome:C_jacchus3.2.1:7:1:155834243:1	40583445	40596777	D	ring finger protein 207 [Source:HGNC Symbol;Acc:HGNC:32947]
ENSCJAG00000004823	KNOWN_BY_PROJECTION	protein_coding	CHADL	chromosome:C_jacchus3.2.1:1:1:210400635:1	201923921	201936023	R	chondroadherin-like [Source:HGNC Symbol;Acc:HGNC:25165]
ENSCJAG00000010210	KNOWN_BY_PROJECTION	protein_coding	NPR1	chromosome:C_jacchus3.2.1:18:1:47448759:1	7608835	7626783	D	natriuretic peptide receptor 1 [Source:HGNC Symbol;Acc:HGNC:7943]
ENSCJAG00000000150	KNOWN	protein_coding	ICMT	chromosome:C_jacchus3.2.1:7:1:155834243:1	40600213	40613099	R	Protein-S-isoprenylcysteine O-methyltransferase {ECO:0000313|EMBL:JAB04452.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000253}  [Source:UniProtKB/TrEMBL;Acc:F7GN70]
ENSCJAG00000019417	KNOWN_BY_PROJECTION	protein_coding	GABRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	69546542	69575946	R	gamma-aminobutyric acid (GABA) A receptor, pi [Source:HGNC Symbol;Acc:HGNC:4089]
ENSCJAG00000004844	KNOWN	protein_coding	RANGAP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	201941615	202007291	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008897}  [Source:UniProtKB/TrEMBL;Acc:F7IF63]
ENSCJAG00000005880	KNOWN	protein_coding	SESN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	108526069	108653713	R	Sestrin-1 isoform 2 {ECO:0000313|EMBL:JAB08448.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010862}  [Source:UniProtKB/TrEMBL;Acc:F7HTF1]
ENSCJAG00000019441	KNOWN	protein_coding	KCNIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	69622158	69980769	R	Kv channel-interacting protein 1 isoform 1 {ECO:0000313|EMBL:JAB12827.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023743}  [Source:UniProtKB/TrEMBL;Acc:F7FZR6]
ENSCJAG00000000174	KNOWN_BY_PROJECTION	protein_coding	ABCA6	chromosome:C_jacchus3.2.1:5:1:159171411:1	117398854	117466260	R	ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
ENSCJAG00000000154	KNOWN_BY_PROJECTION	protein_coding	HES3	chromosome:C_jacchus3.2.1:7:1:155834243:1	40622872	40624254	D	hes family bHLH transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:26226]
ENSCJAG00000000155	KNOWN_BY_PROJECTION	protein_coding	GPR153	chromosome:C_jacchus3.2.1:7:1:155834243:1	40629422	40836620	R	G protein-coupled receptor 153 [Source:HGNC Symbol;Acc:HGNC:23618]
ENSCJAG00000005825	KNOWN	protein_coding	CEP57L1	chromosome:C_jacchus3.2.1:4:1:171630274:1	108597720	108705650	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010728}  [Source:UniProtKB/TrEMBL;Acc:F7IHU2]
ENSCJAG00000000157	KNOWN	protein_coding	ENSCJAG00000000157	chromosome:C_jacchus3.2.1:7:1:155834243:1	40645419	40766764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000267}  [Source:UniProtKB/TrEMBL;Acc:F7GN05]
ENSCJAG00000011690	KNOWN	protein_coding	KCNMB1	chromosome:C_jacchus3.2.1:2:1:204313951:1	69945843	69957210	D	Calcium-activated potassium channel subunit beta-1 {ECO:0000313|EMBL:JAB11541.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021474}  [Source:UniProtKB/TrEMBL;Acc:F6R0K0]
ENSCJAG00000000164	NOVEL	pseudogene	ENSCJAG00000000164	chromosome:C_jacchus3.2.1:7:1:155834243:1	40778605	40779344	R	<no descrition>
ENSCJAG00000000166	KNOWN_BY_PROJECTION	protein_coding	HES2	chromosome:C_jacchus3.2.1:7:1:155834243:1	40796001	40808198	R	hes family bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:16005]
ENSCJAG00000013978	KNOWN_BY_PROJECTION	protein_coding	CALR3	chromosome:C_jacchus3.2.1:22:1:49145316:1	15481345	15503780	R	calreticulin 3 [Source:HGNC Symbol;Acc:HGNC:20407]
ENSCJAG00000000170	KNOWN_BY_PROJECTION	protein_coding	ESPN	chromosome:C_jacchus3.2.1:7:1:155834243:1	40808485	40848609	D	espin [Source:HGNC Symbol;Acc:HGNC:13281]
ENSCJAG00000005810	NOVEL	protein_coding	ENSCJAG00000005810	chromosome:C_jacchus3.2.1:4:1:171630274:1	108835102	108849798	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010685}  [Source:UniProtKB/TrEMBL;Acc:F7HMW6]
ENSCJAG00000011656	KNOWN_BY_PROJECTION	protein_coding	LCP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	70039077	70087932	D	lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) [Source:HGNC Symbol;Acc:HGNC:6529]
ENSCJAG00000013966	KNOWN_BY_PROJECTION	protein_coding	C19orf44	chromosome:C_jacchus3.2.1:22:1:49145316:1	15504061	15528899	D	chromosome 19 open reading frame 44 [Source:HGNC Symbol;Acc:HGNC:26141]
ENSCJAG00000035012	NOVEL	protein_coding	ENSCJAG00000035012	chromosome:C_jacchus3.2.1:4:1:171630274:1	108901306	108920419	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051297}  [Source:UniProtKB/TrEMBL;Acc:F6V032]
ENSCJAG00000005791	KNOWN	protein_coding	CD164	chromosome:C_jacchus3.2.1:4:1:171630274:1	108928687	108946467	R	Sialomucin core protein 24 isoform 1 {ECO:0000313|EMBL:JAB08855.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010652}  [Source:UniProtKB/TrEMBL;Acc:F7HWM0]
ENSCJAG00000004889	KNOWN_BY_PROJECTION	protein_coding	ZC3H7B	chromosome:C_jacchus3.2.1:1:1:210400635:1	202005878	202063316	D	zinc finger CCCH-type containing 7B [Source:HGNC Symbol;Acc:HGNC:30869]
ENSCJAG00000020584	NOVEL	pseudogene	ENSCJAG00000020584	chromosome:C_jacchus3.2.1:X:1:142054208:1	112188246	112188786	D	<no descrition>
ENSCJAG00000020585	KNOWN_BY_PROJECTION	protein_coding	SH2D1A	chromosome:C_jacchus3.2.1:X:1:142054208:1	112279225	112303711	D	SH2 domain containing 1A [Source:HGNC Symbol;Acc:HGNC:10820]
ENSCJAG00000013952	KNOWN	protein_coding	SLC35E1	chromosome:C_jacchus3.2.1:22:1:49145316:1	15559392	15578412	R	Solute carrier family 35 member E1 {ECO:0000313|EMBL:JAB03550.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025644}  [Source:UniProtKB/TrEMBL;Acc:F7BG87]
ENSCJAG00000013939	KNOWN	protein_coding	MED26	chromosome:C_jacchus3.2.1:22:1:49145316:1	15580885	15640402	R	Mediator of RNA polymerase II transcription subunit 26 {ECO:0000313|EMBL:JAB02353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025631}  [Source:UniProtKB/TrEMBL;Acc:F7BXN3]
ENSCJAG00000006475	NOVEL	protein_coding	ENSCJAG00000006475	chromosome:C_jacchus3.2.1:10:1:132174527:1	75069141	75070939	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011937}  [Source:UniProtKB/TrEMBL;Acc:F7GBR0]
ENSCJAG00000000171	KNOWN	protein_coding	PHF13	chromosome:C_jacchus3.2.1:7:1:155834243:1	40843652	41033897	D	PHD finger protein 13 {ECO:0000313|EMBL:JAB09779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000279}  [Source:UniProtKB/TrEMBL;Acc:F7GEQ5]
ENSCJAG00000000177	KNOWN_BY_PROJECTION	protein_coding	TNFRSF25	chromosome:C_jacchus3.2.1:7:1:155834243:1	40849377	40854078	R	tumor necrosis factor receptor superfamily, member 25 [Source:HGNC Symbol;Acc:HGNC:11910]
ENSCJAG00000006480	KNOWN	protein_coding	ATL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	75125054	75241347	D	Atlastin-1 isoform a {ECO:0000313|EMBL:JAB18865.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012149}  [Source:UniProtKB/TrEMBL;Acc:F7E6J5]
ENSCJAG00000000180	KNOWN_BY_PROJECTION	protein_coding	PLEKHG5	chromosome:C_jacchus3.2.1:7:1:155834243:1	40857108	40888551	R	pleckstrin homology domain containing, family G (with RhoGef domain) member 5 [Source:HGNC Symbol;Acc:HGNC:29105]
ENSCJAG00000010155	KNOWN	protein_coding	INTS3	chromosome:C_jacchus3.2.1:18:1:47448759:1	7653926	7705996	D	Integrator complex subunit 3 {ECO:0000313|EMBL:JAB11083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018787}  [Source:UniProtKB/TrEMBL;Acc:F7EB45]
ENSCJAG00000020589	KNOWN_BY_PROJECTION	protein_coding	TENM1	chromosome:C_jacchus3.2.1:X:1:142054208:1	112307520	112885361	R	teneurin transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:8117]
ENSCJAG00000004977	KNOWN	protein_coding	TEF	chromosome:C_jacchus3.2.1:1:1:210400635:1	202073672	202106586	D	Thyrotroph embryonic factor isoform 1 {ECO:0000313|EMBL:JAB10285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043497}  [Source:UniProtKB/TrEMBL;Acc:F7I370]
ENSCJAG00000013936	KNOWN_BY_PROJECTION	protein_coding	SMIM7	chromosome:C_jacchus3.2.1:22:1:49145316:1	15663162	15672166	R	small integral membrane protein 7 [Source:HGNC Symbol;Acc:HGNC:28419]
ENSCJAG00000004995	KNOWN	protein_coding	TOB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	202140654	202153042	R	Protein Tob2 {ECO:0000313|EMBL:JAB08729.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009114}  [Source:UniProtKB/TrEMBL;Acc:F7HNT3]
ENSCJAG00000013929	KNOWN	protein_coding	TMEM38A	chromosome:C_jacchus3.2.1:22:1:49145316:1	15673233	15700797	D	Trimeric intracellular cation channel type A {ECO:0000313|EMBL:JAB01811.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025596}  [Source:UniProtKB/TrEMBL;Acc:F6VZ01]
ENSCJAG00000004999	NOVEL	protein_coding	ENSCJAG00000004999	chromosome:C_jacchus3.2.1:1:1:210400635:1	202173800	202175245	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009122}  [Source:UniProtKB/TrEMBL;Acc:F7HNM7]
ENSCJAG00000000203	KNOWN_BY_PROJECTION	protein_coding	NOL9	chromosome:C_jacchus3.2.1:7:1:155834243:1	40921746	40950852	R	nucleolar protein 9 [Source:HGNC Symbol;Acc:HGNC:26265]
ENSCJAG00000037697	KNOWN_BY_PROJECTION	protein_coding	C5orf58	chromosome:C_jacchus3.2.1:2:1:204313951:1	70089829	70097024	R	chromosome 5 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:37272]
ENSCJAG00000009420	NOVEL	protein_coding	ENSCJAG00000009420	chromosome:C_jacchus3.2.1:22:1:49145316:1	15727987	15787538	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017255}  [Source:UniProtKB/TrEMBL;Acc:F7HW21]
ENSCJAG00000010154	NOVEL	pseudogene	ENSCJAG00000010154	chromosome:C_jacchus3.2.1:18:1:47448759:1	7705750	7706167	R	<no descrition>
ENSCJAG00000009430	NOVEL	protein_coding	ENSCJAG00000009430	chromosome:C_jacchus3.2.1:22:1:49145316:1	15805201	15835133	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017267}  [Source:UniProtKB/TrEMBL;Acc:F7HS78]
ENSCJAG00000010147	KNOWN_BY_PROJECTION	protein_coding	SLC27A3	chromosome:C_jacchus3.2.1:18:1:47448759:1	7707525	7712929	D	solute carrier family 27 (fatty acid transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:10997]
ENSCJAG00000005004	NOVEL	protein_coding	ENSCJAG00000005004	chromosome:C_jacchus3.2.1:1:1:210400635:1	202175712	202238781	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009236}  [Source:UniProtKB/TrEMBL;Acc:F7I8Q0]
ENSCJAG00000009438	KNOWN_BY_PROJECTION	protein_coding	CPAMD8	chromosome:C_jacchus3.2.1:22:1:49145316:1	15841781	15962254	R	C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
ENSCJAG00000000163	NOVEL	pseudogene	ENSCJAG00000000163	chromosome:C_jacchus3.2.1:5:1:159171411:1	117541311	117543349	R	<no descrition>
ENSCJAG00000005768	KNOWN	protein_coding	PPIL6	chromosome:C_jacchus3.2.1:4:1:171630274:1	108954627	109001509	R	Peptidyl-prolyl cis-trans isomerase-like 6 isoform 1 {ECO:0000313|EMBL:JAB13623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010621}  [Source:UniProtKB/TrEMBL;Acc:F7HZ25]
ENSCJAG00000000147	KNOWN_BY_PROJECTION	protein_coding	ABCA5	chromosome:C_jacchus3.2.1:5:1:159171411:1	117554998	117662598	R	ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
ENSCJAG00000032615	NOVEL	protein_coding	ENSCJAG00000032615	chromosome:C_jacchus3.2.1:22:1:49145316:1	15990278	15991310	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052391}  [Source:UniProtKB/TrEMBL;Acc:F7ILB7]
ENSCJAG00000009466	KNOWN_BY_PROJECTION	protein_coding	HAUS8	chromosome:C_jacchus3.2.1:22:1:49145316:1	15991609	16022269	R	HAUS augmin-like complex, subunit 8 [Source:HGNC Symbol;Acc:HGNC:30532]
ENSCJAG00000000215	KNOWN_BY_PROJECTION	protein_coding	TAS1R1	chromosome:C_jacchus3.2.1:7:1:155834243:1	40957372	40981278	D	taste receptor, type 1, member 1 [Source:HGNC Symbol;Acc:HGNC:14448]
ENSCJAG00000005756	KNOWN	protein_coding	SMPD2	chromosome:C_jacchus3.2.1:4:1:171630274:1	109001158	109004369	D	Sphingomyelin phosphodiesterase 2 {ECO:0000313|EMBL:JAB06824.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010586}  [Source:UniProtKB/TrEMBL;Acc:F7I8K1]
ENSCJAG00000000225	KNOWN_BY_PROJECTION	protein_coding	ZBTB48	chromosome:C_jacchus3.2.1:7:1:155834243:1	40982134	40990943	D	zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
ENSCJAG00000010131	KNOWN_BY_PROJECTION	protein_coding	GATAD2B	chromosome:C_jacchus3.2.1:18:1:47448759:1	7749086	7772516	R	GATA zinc finger domain containing 2B [Source:HGNC Symbol;Acc:HGNC:30778]
ENSCJAG00000005072	KNOWN	protein_coding	POLR3H	chromosome:C_jacchus3.2.1:1:1:210400635:1	202239105	202259925	R	DNA-directed RNA polymerase III subunit RPC8 isoform a {ECO:0000313|EMBL:JAB02926.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009261}  [Source:UniProtKB/TrEMBL;Acc:F7I682]
ENSCJAG00000011464	KNOWN_BY_PROJECTION	protein_coding	DOCK2	chromosome:C_jacchus3.2.1:2:1:204313951:1	70090016	70721731	R	dedicator of cytokinesis 2 [Source:HGNC Symbol;Acc:HGNC:2988]
ENSCJAG00000005732	KNOWN_BY_PROJECTION	protein_coding	MICAL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	109004560	109016281	R	microtubule associated monooxygenase, calponin and LIM domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20619]
ENSCJAG00000006644	KNOWN_BY_PROJECTION	protein_coding	NFAM1	chromosome:C_jacchus3.2.1:1:1:210400635:1	202360200	202400090	R	NFAT activating protein with ITAM motif 1 [Source:HGNC Symbol;Acc:HGNC:29872]
ENSCJAG00000000233	KNOWN_BY_PROJECTION	protein_coding	KLHL21	chromosome:C_jacchus3.2.1:7:1:155834243:1	40994944	41009722	R	kelch-like family member 21 [Source:HGNC Symbol;Acc:HGNC:29041]
ENSCJAG00000010062	KNOWN_BY_PROJECTION	protein_coding	DENND4B	chromosome:C_jacchus3.2.1:18:1:47448759:1	7876524	7891615	R	DENN/MADD domain containing 4B [Source:HGNC Symbol;Acc:HGNC:29044]
ENSCJAG00000009486	KNOWN_BY_PROJECTION	protein_coding	MYO9B	chromosome:C_jacchus3.2.1:22:1:49145316:1	16052485	16161824	D	myosin IXB [Source:HGNC Symbol;Acc:HGNC:7609]
ENSCJAG00000009596	KNOWN	protein_coding	CYB5R3	chromosome:C_jacchus3.2.1:1:1:210400635:1	202380011	202581236	R	NADH-cytochrome b5 reductase 3 isoform 1 {ECO:0000313|EMBL:JAB21648.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017619}  [Source:UniProtKB/TrEMBL;Acc:F7I0K8]
ENSCJAG00000000122	KNOWN	protein_coding	MAP2K6	chromosome:C_jacchus3.2.1:5:1:159171411:1	117753254	117897320	D	Dual specificity mitogen-activated protein kinase kinase 6 {ECO:0000313|EMBL:JAB01991.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000242}  [Source:UniProtKB/TrEMBL;Acc:F7GTA7]
ENSCJAG00000006588	NOVEL	pseudogene	ENSCJAG00000006588	chromosome:C_jacchus3.2.1:10:1:132174527:1	75174839	75175352	R	<no descrition>
ENSCJAG00000006590	KNOWN	protein_coding	SAV1	chromosome:C_jacchus3.2.1:10:1:132174527:1	75241893	75280172	R	Protein salvador homolog 1 {ECO:0000313|EMBL:JAB07328.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047257}  [Source:UniProtKB/TrEMBL;Acc:F7IFW9]
ENSCJAG00000005712	KNOWN	protein_coding	ZBTB24	chromosome:C_jacchus3.2.1:4:1:171630274:1	109025187	109042988	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010494}; Zinc finger and BTB domain-containing protein 24 isoform 1 {ECO:0000313|EMBL:JAB09772.1}  [Source:UniProtKB/TrEMBL;Acc:F7IQ17]
ENSCJAG00000000237	KNOWN_BY_PROJECTION	protein_coding	THAP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	41035652	41044603	D	THAP domain containing, apoptosis associated protein 3 [Source:HGNC Symbol;Acc:HGNC:20855]
ENSCJAG00000005643	KNOWN_BY_PROJECTION	protein_coding	AK9	chromosome:C_jacchus3.2.1:4:1:171630274:1	109053557	109271242	R	adenylate kinase 9 [Source:HGNC Symbol;Acc:HGNC:33814]
ENSCJAG00000010045	KNOWN_BY_PROJECTION	protein_coding	CRTC2	chromosome:C_jacchus3.2.1:18:1:47448759:1	7895425	7909155	R	CREB regulated transcription coactivator 2 [Source:HGNC Symbol;Acc:HGNC:27301]
ENSCJAG00000020609	NOVEL	protein_coding	ENSCJAG00000020609	chromosome:C_jacchus3.2.1:X:1:142054208:1	113236874	113241753	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038298}  [Source:UniProtKB/TrEMBL;Acc:F7IL77]
ENSCJAG00000022484	NOVEL	protein_coding	ENSCJAG00000022484	chromosome:C_jacchus3.2.1:X:1:142054208:1	114052741	114054497	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041097}  [Source:UniProtKB/TrEMBL;Acc:F7FG78]
ENSCJAG00000002938	KNOWN_BY_PROJECTION	protein_coding	PRR32	chromosome:C_jacchus3.2.1:X:1:142054208:1	114657456	114659354	D	proline rich 32 [Source:HGNC Symbol;Acc:HGNC:34498]
ENSCJAG00000010006	KNOWN	protein_coding	SLC39A1	chromosome:C_jacchus3.2.1:18:1:47448759:1	7909725	7919211	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048320}; Zinc transporter ZIP1 isoform a {ECO:0000313|EMBL:JAB10267.1}  [Source:UniProtKB/TrEMBL;Acc:F7GT60]
ENSCJAG00000002933	NOVEL	protein_coding	ENSCJAG00000002933	chromosome:C_jacchus3.2.1:X:1:142054208:1	116277338	116278490	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005309}  [Source:UniProtKB/TrEMBL;Acc:F7ILW8]
ENSCJAG00000002928	NOVEL	protein_coding	ENSCJAG00000002928	chromosome:C_jacchus3.2.1:X:1:142054208:1	117281775	117284093	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005304}  [Source:UniProtKB/TrEMBL;Acc:F7ILX2]
ENSCJAG00000009656	KNOWN	protein_coding	ANKLE1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16060980	16242625	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017752}  [Source:UniProtKB/TrEMBL;Acc:F7I9T9]
ENSCJAG00000010042	NOVEL	protein_coding	ENSCJAG00000010042	chromosome:C_jacchus3.2.1:18:1:47448759:1	7913253	7915184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018434}  [Source:UniProtKB/TrEMBL;Acc:F7H0X1]
ENSCJAG00000009547	KNOWN_BY_PROJECTION	protein_coding	USE1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16164932	16169850	D	unconventional SNARE in the ER 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30882]
ENSCJAG00000002868	KNOWN_BY_PROJECTION	protein_coding	SMARCA1	chromosome:C_jacchus3.2.1:X:1:142054208:1	117339543	117418442	R	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:HGNC Symbol;Acc:HGNC:11097]
ENSCJAG00000009978	KNOWN	protein_coding	CREB3L4	chromosome:C_jacchus3.2.1:18:1:47448759:1	7919367	7927963	D	Cyclic AMP-responsive element-binding protein 3-like protein 4 isoform 1 {ECO:0000313|EMBL:JAB07382.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046654}  [Source:UniProtKB/TrEMBL;Acc:F7IMH9]
ENSCJAG00000006608	NOVEL	protein_coding	ENSCJAG00000006608	chromosome:C_jacchus3.2.1:10:1:132174527:1	75294663	75296729	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012190}  [Source:UniProtKB/TrEMBL;Acc:F7HE85]
ENSCJAG00000000242	KNOWN	protein_coding	DNAJC11	chromosome:C_jacchus3.2.1:7:1:155834243:1	41045564	41111763	R	DnaJ homolog subfamily C member 11 {ECO:0000313|EMBL:JAB01773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051804}  [Source:UniProtKB/TrEMBL;Acc:F6YXC8]
ENSCJAG00000023169	KNOWN	protein_coding	KCNJ16	chromosome:C_jacchus3.2.1:5:1:159171411:1	118457665	118595210	D	Inward rectifier potassium channel 16 {ECO:0000313|EMBL:JAB16121.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043961}  [Source:UniProtKB/TrEMBL;Acc:F7IRC4]
ENSCJAG00000000121	KNOWN_BY_PROJECTION	protein_coding	KCNJ2	chromosome:C_jacchus3.2.1:5:1:159171411:1	118546436	118557754	D	potassium channel, inwardly rectifying subfamily J, member 2 [Source:HGNC Symbol;Acc:HGNC:6263]
ENSCJAG00000000116	NOVEL	protein_coding	ENSCJAG00000000116	chromosome:C_jacchus3.2.1:5:1:159171411:1	119750023	119751177	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000193}  [Source:UniProtKB/TrEMBL;Acc:F7D9V3]
ENSCJAG00000009685	NOVEL	protein_coding	ENSCJAG00000009685	chromosome:C_jacchus3.2.1:1:1:210400635:1	202470457	202500898	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028164}  [Source:UniProtKB/TrEMBL;Acc:F6ZQ31]
ENSCJAG00000002748	KNOWN	protein_coding	OCRL	chromosome:C_jacchus3.2.1:X:1:142054208:1	117436749	117492504	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005182}  [Source:UniProtKB/TrEMBL;Acc:F7ICK1]
ENSCJAG00000000109	KNOWN_BY_PROJECTION	protein_coding	SOX9	chromosome:C_jacchus3.2.1:5:1:159171411:1	120513976	120517630	D	SRY (sex determining region Y)-box 9 [Source:HGNC Symbol;Acc:HGNC:11204]
ENSCJAG00000034841	KNOWN	protein_coding	CAMTA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	41195464	41285365	D	Calmodulin-binding transcription activator 1 isoform 2 {ECO:0000313|EMBL:JAB04158.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000461}  [Source:UniProtKB/TrEMBL;Acc:F7FA65]
ENSCJAG00000034127	NOVEL	protein_coding	ENSCJAG00000034127	chromosome:C_jacchus3.2.1:7:1:155834243:1	41792210	41793573	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043864}  [Source:UniProtKB/TrEMBL;Acc:F7I7K9]
ENSCJAG00000009668	KNOWN	protein_coding	RRP7A	chromosome:C_jacchus3.2.1:1:1:210400635:1	202501506	202508991	R	Ribosomal RNA-processing protein 7 homolog A {ECO:0000313|EMBL:JAB04767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017732}  [Source:UniProtKB/TrEMBL;Acc:F7IC42]
ENSCJAG00000009973	KNOWN_BY_PROJECTION	protein_coding	JTB	chromosome:C_jacchus3.2.1:18:1:47448759:1	7927876	7932416	R	jumping translocation breakpoint [Source:HGNC Symbol;Acc:HGNC:6201]
ENSCJAG00000008691	KNOWN	protein_coding	PSMD12	chromosome:C_jacchus3.2.1:5:1:159171411:1	120649851	120673626	R	26S proteasome non-ATPase regulatory subunit 12 isoform 1 {ECO:0000313|EMBL:JAB02460.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016024}  [Source:UniProtKB/TrEMBL;Acc:F6Y6C2]
ENSCJAG00000011649	NOVEL	protein_coding	ENSCJAG00000011649	chromosome:C_jacchus3.2.1:2:1:204313951:1	70186598	70187555	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021397}  [Source:UniProtKB/TrEMBL;Acc:F6SW43]
ENSCJAG00000008726	KNOWN	protein_coding	PITPNC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	120688569	121010359	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016085}  [Source:UniProtKB/TrEMBL;Acc:F6VR35]
ENSCJAG00000000258	KNOWN_BY_PROJECTION	protein_coding	CAMTA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	42070557	42195181	D	calmodulin binding transcription activator 1 [Source:HGNC Symbol;Acc:HGNC:18806]
ENSCJAG00000002719	KNOWN_BY_PROJECTION	protein_coding	XPNPEP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	117645672	117682563	D	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound [Source:HGNC Symbol;Acc:HGNC:12823]
ENSCJAG00000011646	KNOWN_BY_PROJECTION	protein_coding	FOXI1	chromosome:C_jacchus3.2.1:2:1:204313951:1	70219763	70223416	R	forkhead box I1 [Source:HGNC Symbol;Acc:HGNC:3815]
ENSCJAG00000009933	KNOWN	protein_coding	RAB13	chromosome:C_jacchus3.2.1:18:1:47448759:1	7934939	7940960	R	Ras-related protein Rab-13 isoform 1 {ECO:0000313|EMBL:JAB02094.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018312}  [Source:UniProtKB/TrEMBL;Acc:F7ERN4]
ENSCJAG00000011632	KNOWN_BY_PROJECTION	protein_coding	FAM196B	chromosome:C_jacchus3.2.1:2:1:204313951:1	70345099	70463256	D	family with sequence similarity 196, member B [Source:HGNC Symbol;Acc:HGNC:37271]
ENSCJAG00000006611	KNOWN_BY_PROJECTION	protein_coding	NIN	chromosome:C_jacchus3.2.1:10:1:132174527:1	75362824	75471421	R	ninein (GSK3B interacting protein) [Source:HGNC Symbol;Acc:HGNC:14906]
ENSCJAG00000013634	KNOWN	protein_coding	PPP2CA	chromosome:C_jacchus3.2.1:2:1:204313951:1	71082994	71116685	D	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F6UCH7]
ENSCJAG00000009628	KNOWN	protein_coding	POLDIP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	202511900	202540530	R	Polymerase delta-interacting protein 3 isoform 1 {ECO:0000313|EMBL:JAB11170.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017701}  [Source:UniProtKB/TrEMBL;Acc:F7IEI8]
ENSCJAG00000008775	KNOWN	protein_coding	NOL11	chromosome:C_jacchus3.2.1:5:1:159171411:1	121030809	121056206	D	Nucleolar protein 11 {ECO:0000313|EMBL:JAB02731.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016220}  [Source:UniProtKB/TrEMBL;Acc:F6Y5T8]
ENSCJAG00000002703	KNOWN	protein_coding	SASH3	chromosome:C_jacchus3.2.1:X:1:142054208:1	117691913	117707197	D	SAM and SH3 domain-containing protein 3 {ECO:0000313|EMBL:JAB13844.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004925}  [Source:UniProtKB/TrEMBL;Acc:F6UZD4]
ENSCJAG00000000280	KNOWN_BY_PROJECTION	protein_coding	VAMP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	42202424	42210671	D	vesicle-associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:12644]
ENSCJAG00000009929	NOVEL	protein_coding	RPS27	chromosome:C_jacchus3.2.1:18:1:47448759:1	7945571	7947022	D	40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671}  [Source:UniProtKB/TrEMBL;Acc:B0VXF6]
ENSCJAG00000009771	KNOWN	protein_coding	PACSIN2	chromosome:C_jacchus3.2.1:1:1:210400635:1	202649356	202869807	R	Protein kinase C and casein kinase substrate in neurons protein 2 isoform B {ECO:0000313|EMBL:JAB12583.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042066}  [Source:UniProtKB/TrEMBL;Acc:F6RH78]
ENSCJAG00000013613	NOVEL	protein_coding	ENSCJAG00000013613	chromosome:C_jacchus3.2.1:2:1:204313951:1	71139899	71161719	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025062}  [Source:UniProtKB/TrEMBL;Acc:F6YJX0]
ENSCJAG00000009801	KNOWN_BY_PROJECTION	protein_coding	NUP210L	chromosome:C_jacchus3.2.1:18:1:47448759:1	7947921	8095198	R	nucleoporin 210kDa-like [Source:HGNC Symbol;Acc:HGNC:29915]
ENSCJAG00000000288	KNOWN_BY_PROJECTION	protein_coding	PER3	chromosome:C_jacchus3.2.1:7:1:155834243:1	42215800	42285851	D	period circadian clock 3 [Source:HGNC Symbol;Acc:HGNC:8847]
ENSCJAG00000033930	NOVEL	protein_coding	ENSCJAG00000033930	chromosome:C_jacchus3.2.1:5:1:159171411:1	121102499	121103332	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045482}  [Source:UniProtKB/TrEMBL;Acc:F6Q3N9]
ENSCJAG00000002664	KNOWN	protein_coding	ZDHHC9	chromosome:C_jacchus3.2.1:X:1:142054208:1	117716656	117755188	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F7HP76]
ENSCJAG00000009584	KNOWN_BY_PROJECTION	protein_coding	OCEL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16174299	16178389	D	occludin/ELL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26221]
ENSCJAG00000031506	NOVEL	protein_coding	ENSCJAG00000031506	chromosome:C_jacchus3.2.1:5:1:159171411:1	121137072	121254020	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046119}  [Source:UniProtKB/TrEMBL;Acc:F6X157]
ENSCJAG00000009593	KNOWN_BY_PROJECTION	protein_coding	NR2F6	chromosome:C_jacchus3.2.1:22:1:49145316:1	16180222	16359909	R	nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
ENSCJAG00000009816	KNOWN	protein_coding	ARFGAP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	202718415	202788545	R	ADP-ribosylation factor GTPase-activating protein 3 isoform 1 {ECO:0000313|EMBL:JAB09810.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018049}  [Source:UniProtKB/TrEMBL;Acc:F7GR93]
ENSCJAG00000009925	NOVEL	pseudogene	ENSCJAG00000009925	chromosome:C_jacchus3.2.1:18:1:47448759:1	7964785	7965367	R	<no descrition>
ENSCJAG00000009614	KNOWN_BY_PROJECTION	protein_coding	USHBP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16201489	16219098	R	Usher syndrome 1C binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24058]
ENSCJAG00000013603	KNOWN_BY_PROJECTION	protein_coding	TCF7	chromosome:C_jacchus3.2.1:2:1:204313951:1	71171387	71202960	R	transcription factor 7 (T-cell specific, HMG-box) [Source:HGNC Symbol;Acc:HGNC:11639]
ENSCJAG00000009747	KNOWN	protein_coding	TPM3	chromosome:C_jacchus3.2.1:18:1:47448759:1	8096567	8132143	R	Tropomyosin alpha-3 chain isoform 2 {ECO:0000313|EMBL:JAB10190.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017936}  [Source:UniProtKB/TrEMBL;Acc:F7IC11]
ENSCJAG00000000294	KNOWN_BY_PROJECTION	protein_coding	UTS2	chromosome:C_jacchus3.2.1:7:1:155834243:1	42289510	42295677	R	urotensin 2 [Source:HGNC Symbol;Acc:HGNC:12636]
ENSCJAG00000032799	NOVEL	pseudogene	ENSCJAG00000032799	chromosome:C_jacchus3.2.1:2:1:204313951:1	71229088	71229851	R	<no descrition>
ENSCJAG00000013556	KNOWN	protein_coding	VDAC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	71303613	71336644	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025004}; Voltage-dependent anion-selective channel protein 1 {ECO:0000313|EMBL:JAB11763.1}  [Source:UniProtKB/TrEMBL;Acc:F7AKB9]
ENSCJAG00000000312	NOVEL	pseudogene	ENSCJAG00000000312	chromosome:C_jacchus3.2.1:7:1:155834243:1	42332781	42333181	D	<no descrition>
ENSCJAG00000000298	NOVEL	pseudogene	ENSCJAG00000000298	chromosome:C_jacchus3.2.1:7:1:155834243:1	42333267	42334201	D	<no descrition>
ENSCJAG00000009641	KNOWN_BY_PROJECTION	protein_coding	BABAM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16223785	16234467	D	BRISC and BRCA1 A complex member 1 [Source:HGNC Symbol;Acc:HGNC:25008]
ENSCJAG00000000317	KNOWN_BY_PROJECTION	protein_coding	TNFRSF9	chromosome:C_jacchus3.2.1:7:1:155834243:1	42354043	42373396	R	tumor necrosis factor receptor superfamily, member 9 [Source:HGNC Symbol;Acc:HGNC:11924]
ENSCJAG00000000319	KNOWN	protein_coding	PARK7	chromosome:C_jacchus3.2.1:7:1:155834243:1	42402208	42424425	D	Protein DJ-1 {ECO:0000313|EMBL:JAB02268.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000538}  [Source:UniProtKB/TrEMBL;Acc:F7H340]
ENSCJAG00000034773	NOVEL	protein_coding	ENSCJAG00000034773	chromosome:C_jacchus3.2.1:X:1:142054208:1	117778950	117780451	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052104}  [Source:UniProtKB/TrEMBL;Acc:F7I2S9]
ENSCJAG00000013543	KNOWN	protein_coding	C5ORF15	chromosome:C_jacchus3.2.1:2:1:204313951:1	71339887	71362247	D	Keratinocyte-associated transmembrane protein 2 {ECO:0000313|EMBL:JAB08677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024906}  [Source:UniProtKB/TrEMBL;Acc:F6S0U8]
ENSCJAG00000000324	KNOWN	protein_coding	ERRFI1	chromosome:C_jacchus3.2.1:7:1:155834243:1	42451233	42466283	R	ERBB receptor feedback inhibitor 1 {ECO:0000313|EMBL:JAB09735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000545}  [Source:UniProtKB/TrEMBL;Acc:F7H303]
ENSCJAG00000009699	KNOWN	protein_coding	ABHD8	chromosome:C_jacchus3.2.1:22:1:49145316:1	16248930	16260323	R	Abhydrolase domain-containing protein 8 {ECO:0000313|EMBL:JAB02924.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017779}  [Source:UniProtKB/TrEMBL;Acc:F7I7F3]
ENSCJAG00000035875	NOVEL	protein_coding	ENSCJAG00000035875	chromosome:C_jacchus3.2.1:5:1:159171411:1	121253927	121298773	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016258}  [Source:UniProtKB/TrEMBL;Acc:F6WUT0]
ENSCJAG00000000330	KNOWN_BY_PROJECTION	protein_coding	SLC45A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	42768266	42798410	D	solute carrier family 45, member 1 [Source:HGNC Symbol;Acc:HGNC:17939]
ENSCJAG00000009715	KNOWN_BY_PROJECTION	protein_coding	MRPL34	chromosome:C_jacchus3.2.1:22:1:49145316:1	16262890	16264056	D	mitochondrial ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:14488]
ENSCJAG00000009720	KNOWN_BY_PROJECTION	protein_coding	DDA1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16267688	16278747	D	DET1 and DDB1 associated 1 [Source:HGNC Symbol;Acc:HGNC:28360]
ENSCJAG00000008889	KNOWN_BY_PROJECTION	protein_coding	C17orf58	chromosome:C_jacchus3.2.1:5:1:159171411:1	121308931	121311043	R	chromosome 17 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:27568]
ENSCJAG00000022630	NOVEL	protein_coding	ENSCJAG00000022630	chromosome:C_jacchus3.2.1:5:1:159171411:1	121343802	121344711	R	<no descrition>
ENSCJAG00000019941	KNOWN	protein_coding	SLC39A11	chromosome:C_jacchus3.2.1:5:1:159171411:1	121831219	122282590	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037095}; Zinc transporter ZIP11 isoform 1 {ECO:0000313|EMBL:JAB06885.1}  [Source:UniProtKB/TrEMBL;Acc:F6WNH0]
ENSCJAG00000002637	KNOWN_BY_PROJECTION	protein_coding	UTP14A	chromosome:C_jacchus3.2.1:X:1:142054208:1	117810527	117834763	D	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) [Source:HGNC Symbol;Acc:HGNC:10665]
ENSCJAG00000009731	KNOWN	protein_coding	GTPBP3	chromosome:C_jacchus3.2.1:22:1:49145316:1	16293572	16301083	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017861}; tRNA modification GTPase GTPBP3, mitochondrial isoform V {ECO:0000313|EMBL:JAB03739.1}  [Source:UniProtKB/TrEMBL;Acc:F7HKI9]
ENSCJAG00000009736	KNOWN_BY_PROJECTION	protein_coding	C1orf189	chromosome:C_jacchus3.2.1:18:1:47448759:1	8139034	8149361	R	chromosome 1 open reading frame 189 [Source:HGNC Symbol;Acc:HGNC:32305]
ENSCJAG00000009722	KNOWN	protein_coding	C1ORF43	chromosome:C_jacchus3.2.1:18:1:47448759:1	8150392	8165092	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017831}; Uncharacterized protein C1orf43 isoform 3 {ECO:0000313|EMBL:JAB22215.1}  [Source:UniProtKB/TrEMBL;Acc:F7HRA2]
ENSCJAG00000009758	KNOWN_BY_PROJECTION	protein_coding	TTLL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	202960445	203147900	R	tubulin tyrosine ligase-like family member 1 [Source:HGNC Symbol;Acc:HGNC:1312]
ENSCJAG00000019951	NOVEL	protein_coding	ENSCJAG00000019951	chromosome:C_jacchus3.2.1:5:1:159171411:1	121969824	121970234	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037103}  [Source:UniProtKB/TrEMBL;Acc:F6UXX3]
ENSCJAG00000009753	KNOWN_BY_PROJECTION	protein_coding	PLVAP	chromosome:C_jacchus3.2.1:22:1:49145316:1	16313975	16335746	R	plasmalemma vesicle associated protein [Source:HGNC Symbol;Acc:HGNC:13635]
ENSCJAG00000019937	KNOWN_BY_PROJECTION	protein_coding	SSTR2	chromosome:C_jacchus3.2.1:5:1:159171411:1	122355001	122362270	D	somatostatin receptor 2 [Source:HGNC Symbol;Acc:HGNC:11331]
ENSCJAG00000009764	KNOWN_BY_PROJECTION	protein_coding	BST2	chromosome:C_jacchus3.2.1:22:1:49145316:1	16350999	16361815	R	bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]
ENSCJAG00000013755	NOVEL	protein_coding	ENSCJAG00000013755	chromosome:C_jacchus3.2.1:22:1:49145316:1	16410868	16427585	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025288}  [Source:UniProtKB/TrEMBL;Acc:F6VI08]
ENSCJAG00000019919	KNOWN	protein_coding	COG1	chromosome:C_jacchus3.2.1:5:1:159171411:1	122386476	122400459	D	Conserved oligomeric Golgi complex subunit 1 {ECO:0000313|EMBL:JAB10781.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037060}  [Source:UniProtKB/TrEMBL;Acc:F6XYA7]
ENSCJAG00000005542	KNOWN	protein_coding	FIG4	chromosome:C_jacchus3.2.1:4:1:171630274:1	109271252	109406563	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010302}  [Source:UniProtKB/TrEMBL;Acc:F7AS85]
ENSCJAG00000013506	KNOWN	protein_coding	FSTL4	chromosome:C_jacchus3.2.1:2:1:204313951:1	71791850	72231666	D	Follistatin-related protein 4 {ECO:0000313|EMBL:JAB11868.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047698}  [Source:UniProtKB/TrEMBL;Acc:F7GM87]
ENSCJAG00000000334	KNOWN_BY_PROJECTION	protein_coding	RERE	chromosome:C_jacchus3.2.1:7:1:155834243:1	42807126	43115240	R	arginine-glutamic acid dipeptide (RE) repeats [Source:HGNC Symbol;Acc:HGNC:9965]
ENSCJAG00000000356	NOVEL	pseudogene	ENSCJAG00000000356	chromosome:C_jacchus3.2.1:7:1:155834243:1	43297490	43298283	D	<no descrition>
ENSCJAG00000000359	NOVEL	protein_coding	ENSCJAG00000000359	chromosome:C_jacchus3.2.1:7:1:155834243:1	43334111	43351112	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000628}  [Source:UniProtKB/TrEMBL;Acc:F6QLD5]
ENSCJAG00000009677	NOVEL	protein_coding	ENSCJAG00000009677	chromosome:C_jacchus3.2.1:18:1:47448759:1	8165900	8225876	D	<no descrition>
ENSCJAG00000002614	KNOWN_BY_PROJECTION	protein_coding	BCORL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	117886203	118040028	D	BCL6 corepressor-like 1 [Source:HGNC Symbol;Acc:HGNC:25657]
ENSCJAG00000013764	KNOWN	protein_coding	MVB12A	chromosome:C_jacchus3.2.1:22:1:49145316:1	16462048	16469569	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025321}  [Source:UniProtKB/TrEMBL;Acc:F7BJ08]
ENSCJAG00000000376	KNOWN_BY_PROJECTION	protein_coding	CA6	chromosome:C_jacchus3.2.1:7:1:155834243:1	43403665	43419506	D	carbonic anhydrase VI [Source:HGNC Symbol;Acc:HGNC:1380]
ENSCJAG00000013780	KNOWN_BY_PROJECTION	protein_coding	NXNL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16499177	16503312	R	nucleoredoxin-like 1 [Source:HGNC Symbol;Acc:HGNC:25179]
ENSCJAG00000019918	KNOWN	protein_coding	FAM104A	chromosome:C_jacchus3.2.1:5:1:159171411:1	122399303	122418571	R	Protein FAM104A isoform 2 {ECO:0000313|EMBL:JAB10780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037028}  [Source:UniProtKB/TrEMBL;Acc:F6ZJ46]
ENSCJAG00000033699	NOVEL	pseudogene	ENSCJAG00000033699	chromosome:C_jacchus3.2.1:2:1:204313951:1	72311555	72312117	R	<no descrition>
ENSCJAG00000000382	KNOWN_BY_PROJECTION	protein_coding	SLC2A7	chromosome:C_jacchus3.2.1:7:1:155834243:1	43452435	43507194	R	solute carrier family 2 (facilitated glucose transporter), member 7 [Source:HGNC Symbol;Acc:HGNC:13445]
ENSCJAG00000013783	KNOWN	protein_coding	SLC27A1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16507813	16679465	D	Long-chain fatty acid transport protein 1 {ECO:0000313|EMBL:JAB09474.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025351}  [Source:UniProtKB/TrEMBL;Acc:F7AGP8]
ENSCJAG00000009660	KNOWN	protein_coding	HAX1	chromosome:C_jacchus3.2.1:18:1:47448759:1	8228663	8232634	D	HCLS1-associated protein X-1 isoform a {ECO:0000313|EMBL:JAB09962.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017715}  [Source:UniProtKB/TrEMBL;Acc:F7IC79]
ENSCJAG00000001723	KNOWN_BY_PROJECTION	protein_coding	BIK	chromosome:C_jacchus3.2.1:1:1:210400635:1	203105337	203108558	D	BCL2-interacting killer (apoptosis-inducing) [Source:HGNC Symbol;Acc:HGNC:1051]
ENSCJAG00000013798	KNOWN	protein_coding	PGLS	chromosome:C_jacchus3.2.1:22:1:49145316:1	16538955	16546468	D	6-phosphogluconolactonase {ECO:0000313|EMBL:JAB04109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025377}  [Source:UniProtKB/TrEMBL;Acc:F6ZGY9]
ENSCJAG00000001717	KNOWN_BY_PROJECTION	protein_coding	MCAT	chromosome:C_jacchus3.2.1:1:1:210400635:1	203112117	203121843	R	malonyl CoA:ACP acyltransferase (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:29622]
ENSCJAG00000022895	NOVEL	pseudogene	ENSCJAG00000022895	chromosome:C_jacchus3.2.1:4:1:171630274:1	109509424	109510225	D	<no descrition>
ENSCJAG00000013384	KNOWN	protein_coding	HSPA4	chromosome:C_jacchus3.2.1:2:1:204313951:1	72329832	72395796	R	Heat shock 70 kDa protein 4 {ECO:0000313|EMBL:JAB03627.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024822}  [Source:UniProtKB/TrEMBL;Acc:F6PM06]
ENSCJAG00000013801	KNOWN_BY_PROJECTION	protein_coding	FAM129C	chromosome:C_jacchus3.2.1:22:1:49145316:1	16550626	16580052	D	family with sequence similarity 129, member C [Source:HGNC Symbol;Acc:HGNC:24130]
ENSCJAG00000000405	KNOWN_BY_PROJECTION	protein_coding	SLC2A5	chromosome:C_jacchus3.2.1:7:1:155834243:1	43486956	43522962	R	solute carrier family 2 (facilitated glucose/fructose transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:11010]
ENSCJAG00000019913	KNOWN	protein_coding	C17ORF80	chromosome:C_jacchus3.2.1:5:1:159171411:1	122418410	122432756	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037025}; Uncharacterized protein C17orf80 isoform a {ECO:0000313|EMBL:JAB15367.1}  [Source:UniProtKB/TrEMBL;Acc:F6ZJA2]
ENSCJAG00000019911	KNOWN_BY_PROJECTION	protein_coding	CPSF4L	chromosome:C_jacchus3.2.1:5:1:159171411:1	122433699	122447122	R	cleavage and polyadenylation specific factor 4-like [Source:HGNC Symbol;Acc:HGNC:33632]
ENSCJAG00000019909	KNOWN_BY_PROJECTION	protein_coding	CDC42EP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	122467214	122492899	R	CDC42 effector protein (Rho GTPase binding) 4 [Source:HGNC Symbol;Acc:HGNC:17147]
ENSCJAG00000005525	KNOWN_BY_PROJECTION	protein_coding	GPR6	chromosome:C_jacchus3.2.1:4:1:171630274:1	109574094	109576326	D	G protein-coupled receptor 6 [Source:HGNC Symbol;Acc:HGNC:4515]
ENSCJAG00000001704	KNOWN	protein_coding	TSPO	chromosome:C_jacchus3.2.1:1:1:210400635:1	203131964	203143145	D	Translocator protein {ECO:0000313|EMBL:JAB06511.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003060}  [Source:UniProtKB/TrEMBL;Acc:F7G6Z3]
ENSCJAG00000005488	KNOWN	protein_coding	WASF1	chromosome:C_jacchus3.2.1:4:1:171630274:1	109710688	109782301	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010073}; Wiskott-Aldrich syndrome protein family member 1 {ECO:0000313|EMBL:JAB22275.1}  [Source:UniProtKB/TrEMBL;Acc:F7AUN9]
ENSCJAG00000019883	KNOWN_BY_PROJECTION	protein_coding	SDK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	122523439	122714317	R	sidekick cell adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:19308]
ENSCJAG00000019907	NOVEL	pseudogene	ENSCJAG00000019907	chromosome:C_jacchus3.2.1:5:1:159171411:1	122540499	122541594	R	<no descrition>
ENSCJAG00000015008	KNOWN_BY_PROJECTION	protein_coding	RPL38	chromosome:C_jacchus3.2.1:5:1:159171411:1	123443010	123445472	D	ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349]
ENSCJAG00000005410	KNOWN	protein_coding	CDC40	chromosome:C_jacchus3.2.1:4:1:171630274:1	109783401	109841658	D	Pre-mRNA-processing factor 17 {ECO:0000313|EMBL:JAB06570.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010011}  [Source:UniProtKB/TrEMBL;Acc:F7CR49]
ENSCJAG00000001674	KNOWN	protein_coding	TTLL12	chromosome:C_jacchus3.2.1:1:1:210400635:1	203145955	203168275	R	Tubulin--tyrosine ligase-like protein 12 {ECO:0000313|EMBL:JAB09877.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003040}  [Source:UniProtKB/TrEMBL;Acc:F7GI97]
ENSCJAG00000009657	KNOWN_BY_PROJECTION	protein_coding	AQP10	chromosome:C_jacchus3.2.1:18:1:47448759:1	8254443	8258602	D	aquaporin 10 [Source:HGNC Symbol;Acc:HGNC:16029]
ENSCJAG00000000411	NOVEL	pseudogene	ENSCJAG00000000411	chromosome:C_jacchus3.2.1:7:1:155834243:1	43558861	43559264	D	<no descrition>
ENSCJAG00000014989	KNOWN	protein_coding	TTYH2	chromosome:C_jacchus3.2.1:5:1:159171411:1	123448982	123498325	D	Protein tweety homolog {ECO:0000256|RuleBase:RU361114}  [Source:UniProtKB/TrEMBL;Acc:F7GUD6]
ENSCJAG00000037687	NOVEL	protein_coding	ENSCJAG00000037687	chromosome:C_jacchus3.2.1:1:1:210400635:1	203146245	203151226	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003004}  [Source:UniProtKB/TrEMBL;Acc:F7GQ73]
ENSCJAG00000002612	KNOWN_BY_PROJECTION	protein_coding	ELF4	chromosome:C_jacchus3.2.1:X:1:142054208:1	117974688	117987884	R	E74-like factor 4 (ets domain transcription factor) [Source:HGNC Symbol;Acc:HGNC:3319]
ENSCJAG00000000418	KNOWN	protein_coding	H6PD	chromosome:C_jacchus3.2.1:7:1:155834243:1	43564047	43757230	D	GDH/6PGL endoplasmic bifunctional protein {ECO:0000313|EMBL:JAB44290.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000712}  [Source:UniProtKB/TrEMBL;Acc:F6SEE5]
ENSCJAG00000014900	KNOWN_BY_PROJECTION	protein_coding	GPRC5C	chromosome:C_jacchus3.2.1:5:1:159171411:1	123479706	123684501	D	G protein-coupled receptor, class C, group 5, member C [Source:HGNC Symbol;Acc:HGNC:13309]
ENSCJAG00000013838	KNOWN_BY_PROJECTION	protein_coding	COLGALT1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16582445	16609513	D	collagen beta(1-O)galactosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26182]
ENSCJAG00000001645	KNOWN_BY_PROJECTION	protein_coding	SCUBE1	chromosome:C_jacchus3.2.1:1:1:210400635:1	203186647	203342376	R	signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
ENSCJAG00000009583	KNOWN_BY_PROJECTION	protein_coding	ATP8B2	chromosome:C_jacchus3.2.1:18:1:47448759:1	8261075	8287409	D	ATPase, aminophospholipid transporter, class I, type 8B, member 2 [Source:HGNC Symbol;Acc:HGNC:13534]
ENSCJAG00000000413	KNOWN_BY_PROJECTION	protein_coding	GPR157	chromosome:C_jacchus3.2.1:7:1:155834243:1	43569879	43594666	R	G protein-coupled receptor 157 [Source:HGNC Symbol;Acc:HGNC:23687]
ENSCJAG00000000422	KNOWN	protein_coding	SPSB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	43846850	43868088	D	SPRY domain-containing SOCS box protein 1 {ECO:0000313|EMBL:JAB10188.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000716}  [Source:UniProtKB/TrEMBL;Acc:F6SE99]
ENSCJAG00000013861	KNOWN_BY_PROJECTION	protein_coding	UNC13A	chromosome:C_jacchus3.2.1:22:1:49145316:1	16625715	16718294	R	unc-13 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:23150]
ENSCJAG00000037234	NOVEL	protein_coding	ENSCJAG00000037234	chromosome:C_jacchus3.2.1:7:1:155834243:1	43866123	43868088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042477}  [Source:UniProtKB/TrEMBL;Acc:F6Z7C5]
ENSCJAG00000000424	KNOWN	protein_coding	SLC25A33	chromosome:C_jacchus3.2.1:7:1:155834243:1	44037758	44079293	D	Solute carrier family 25 member 33 {ECO:0000313|EMBL:JAB02800.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000731}  [Source:UniProtKB/TrEMBL;Acc:F6SDR6]
ENSCJAG00000001643	KNOWN	protein_coding	MPPED1	chromosome:C_jacchus3.2.1:1:1:210400635:1	203421767	203489416	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002919}  [Source:UniProtKB/TrEMBL;Acc:F7HXB9]
ENSCJAG00000014971	KNOWN_BY_PROJECTION	protein_coding	DNAI2	chromosome:C_jacchus3.2.1:5:1:159171411:1	123511115	123550833	D	dynein, axonemal, intermediate chain 2 [Source:HGNC Symbol;Acc:HGNC:18744]
ENSCJAG00000005395	KNOWN_BY_PROJECTION	protein_coding	METTL24	chromosome:C_jacchus3.2.1:4:1:171630274:1	109855524	110027855	R	methyltransferase like 24 [Source:HGNC Symbol;Acc:HGNC:21566]
ENSCJAG00000000432	KNOWN	protein_coding	TMEM201	chromosome:C_jacchus3.2.1:7:1:155834243:1	44094588	44110318	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000736}  [Source:UniProtKB/TrEMBL;Acc:F6SDL8]
ENSCJAG00000013920	KNOWN_BY_PROJECTION	protein_coding	MAP1S	chromosome:C_jacchus3.2.1:22:1:49145316:1	16745209	16761028	D	microtubule-associated protein 1S [Source:HGNC Symbol;Acc:HGNC:15715]
ENSCJAG00000014908	KNOWN	protein_coding	KIF19	chromosome:C_jacchus3.2.1:5:1:159171411:1	123565790	123595325	D	Kinesin-like protein KIF19 {ECO:0000313|EMBL:JAB16441.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027519}  [Source:UniProtKB/TrEMBL;Acc:F7ELH6]
ENSCJAG00000002528	KNOWN_BY_PROJECTION	protein_coding	AIFM1	chromosome:C_jacchus3.2.1:X:1:142054208:1	118048564	118087085	R	apoptosis-inducing factor, mitochondrion-associated, 1 [Source:HGNC Symbol;Acc:HGNC:8768]
ENSCJAG00000034571	NOVEL	pseudogene	ENSCJAG00000034571	chromosome:C_jacchus3.2.1:18:1:47448759:1	8272376	8272917	D	<no descrition>
ENSCJAG00000009567	KNOWN_BY_PROJECTION	protein_coding	IL6R	chromosome:C_jacchus3.2.1:18:1:47448759:1	8344791	8410862	D	interleukin 6 receptor [Source:HGNC Symbol;Acc:HGNC:6019]
ENSCJAG00000005407	NOVEL	protein_coding	ENSCJAG00000005407	chromosome:C_jacchus3.2.1:4:1:171630274:1	109911841	109912730	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009874}  [Source:UniProtKB/TrEMBL;Acc:F7F6J4]
ENSCJAG00000035740	KNOWN_BY_PROJECTION	protein_coding	DDO	chromosome:C_jacchus3.2.1:4:1:171630274:1	110011327	110035534	R	D-aspartate oxidase [Source:HGNC Symbol;Acc:HGNC:2727]
ENSCJAG00000005357	KNOWN_BY_PROJECTION	protein_coding	SLC22A16	chromosome:C_jacchus3.2.1:4:1:171630274:1	110044624	110095872	R	solute carrier family 22 (organic cation/carnitine transporter), member 16 [Source:HGNC Symbol;Acc:HGNC:20302]
ENSCJAG00000005353	NOVEL	pseudogene	ENSCJAG00000005353	chromosome:C_jacchus3.2.1:4:1:171630274:1	110107202	110108412	D	<no descrition>
ENSCJAG00000014960	KNOWN_BY_PROJECTION	protein_coding	BTBD17	chromosome:C_jacchus3.2.1:5:1:159171411:1	123596141	123601941	R	BTB (POZ) domain containing 17 [Source:HGNC Symbol;Acc:HGNC:33758]
ENSCJAG00000015219	KNOWN_BY_PROJECTION	protein_coding	EFCAB6	chromosome:C_jacchus3.2.1:1:1:210400635:1	203516063	203844322	R	EF-hand calcium binding domain 6 [Source:HGNC Symbol;Acc:HGNC:24204]
ENSCJAG00000005299	KNOWN	protein_coding	CDK19	chromosome:C_jacchus3.2.1:4:1:171630274:1	110237715	110451603	R	Cyclin-dependent kinase 19 {ECO:0000313|EMBL:JAB07134.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009778}  [Source:UniProtKB/TrEMBL;Acc:F7GWQ9]
ENSCJAG00000014726	KNOWN	protein_coding	NAT9	chromosome:C_jacchus3.2.1:5:1:159171411:1	123634066	124095216	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027124}  [Source:UniProtKB/TrEMBL;Acc:F7CWS6]
ENSCJAG00000035093	NOVEL	pseudogene	ENSCJAG00000035093	chromosome:C_jacchus3.2.1:18:1:47448759:1	8354982	8355619	R	<no descrition>
ENSCJAG00000013943	KNOWN_BY_PROJECTION	protein_coding	FCHO1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16787785	16824625	D	FCH domain only 1 [Source:HGNC Symbol;Acc:HGNC:29002]
ENSCJAG00000009551	KNOWN_BY_PROJECTION	protein_coding	SHE	chromosome:C_jacchus3.2.1:18:1:47448759:1	8430730	8453640	R	Src homology 2 domain containing E [Source:HGNC Symbol;Acc:HGNC:27004]
ENSCJAG00000009543	KNOWN_BY_PROJECTION	protein_coding	TDRD10	chromosome:C_jacchus3.2.1:18:1:47448759:1	8453510	8508137	D	tudor domain containing 10 [Source:HGNC Symbol;Acc:HGNC:25316]
ENSCJAG00000013504	NOVEL	protein_coding	ENSCJAG00000013504	chromosome:C_jacchus3.2.1:2:1:204313951:1	72379230	72380546	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019766}  [Source:UniProtKB/TrEMBL;Acc:F6WX24]
ENSCJAG00000013380	NOVEL	pseudogene	ENSCJAG00000013380	chromosome:C_jacchus3.2.1:2:1:204313951:1	72410713	72411870	D	<no descrition>
ENSCJAG00000013378	NOVEL	protein_coding	ENSCJAG00000013378	chromosome:C_jacchus3.2.1:2:1:204313951:1	72412118	72416017	R	Protein kish {ECO:0000256|RuleBase:RU910717}  [Source:UniProtKB/TrEMBL;Acc:F7GDB1]
ENSCJAG00000013372	NOVEL	pseudogene	ENSCJAG00000013372	chromosome:C_jacchus3.2.1:2:1:204313951:1	72422222	72422610	R	<no descrition>
ENSCJAG00000014894	KNOWN_BY_PROJECTION	protein_coding	CD300A	chromosome:C_jacchus3.2.1:5:1:159171411:1	123707224	123726499	D	CD300a molecule [Source:HGNC Symbol;Acc:HGNC:19319]
ENSCJAG00000013360	KNOWN	protein_coding	ENSCJAG00000013360	chromosome:C_jacchus3.2.1:2:1:204313951:1	72431395	72453989	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024540}; Zinc finger CCHC domain-containing protein 10 {ECO:0000313|EMBL:JAB07664.1}  [Source:UniProtKB/TrEMBL;Acc:F7GMH5]
ENSCJAG00000014880	KNOWN_BY_PROJECTION	protein_coding	CD300LB	chromosome:C_jacchus3.2.1:5:1:159171411:1	123746601	123758859	R	CD300 molecule-like family member b [Source:HGNC Symbol;Acc:HGNC:30811]
ENSCJAG00000006780	KNOWN	protein_coding	ABHD12B	chromosome:C_jacchus3.2.1:10:1:132174527:1	75514167	75541036	D	Abhydrolase domain-containing protein 12B isoform a {ECO:0000313|EMBL:JAB25329.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012587}  [Source:UniProtKB/TrEMBL;Acc:F7GCW8]
ENSCJAG00000014867	KNOWN_BY_PROJECTION	protein_coding	CD300C	chromosome:C_jacchus3.2.1:5:1:159171411:1	123765831	123770988	R	CD300c molecule [Source:HGNC Symbol;Acc:HGNC:19320]
ENSCJAG00000000437	NOVEL	protein_coding	ENSCJAG00000000437	chromosome:C_jacchus3.2.1:7:1:155834243:1	44166763	44167404	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000746}  [Source:UniProtKB/TrEMBL;Acc:F6SD28]
ENSCJAG00000013322	KNOWN	protein_coding	AFF4	chromosome:C_jacchus3.2.1:2:1:204313951:1	72495742	72591332	D	AF4/FMR2 family member 4 {ECO:0000313|EMBL:JAB09252.1}; Putative uncharacterized protein AFF4 {ECO:0000313|EMBL:ABZ10530.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024531}  [Source:UniProtKB/TrEMBL;Acc:B0KWQ0]
ENSCJAG00000014849	NOVEL	protein_coding	ENSCJAG00000014849	chromosome:C_jacchus3.2.1:5:1:159171411:1	123798100	123930458	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038366}  [Source:UniProtKB/TrEMBL;Acc:F7I4Q6]
ENSCJAG00000000442	KNOWN_BY_PROJECTION	protein_coding	PIK3CD	chromosome:C_jacchus3.2.1:7:1:155834243:1	44222910	44240232	D	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta [Source:HGNC Symbol;Acc:HGNC:8977]
ENSCJAG00000005257	KNOWN	protein_coding	AMD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	110450682	110554357	D	S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|PIRNR:PIRNR001355}  [Source:UniProtKB/TrEMBL;Acc:F6VM17]
ENSCJAG00000013989	KNOWN_BY_PROJECTION	protein_coding	B3GNT3	chromosome:C_jacchus3.2.1:22:1:49145316:1	16831802	16848546	D	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:13528]
ENSCJAG00000002524	KNOWN_BY_PROJECTION	protein_coding	RAB33A	chromosome:C_jacchus3.2.1:X:1:142054208:1	118093678	118105140	D	RAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]
ENSCJAG00000002491	KNOWN_BY_PROJECTION	protein_coding	ZNF280C	chromosome:C_jacchus3.2.1:X:1:142054208:1	118121522	118187337	R	zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
ENSCJAG00000000470	KNOWN_BY_PROJECTION	protein_coding	CLSTN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	44243348	44352211	R	calsyntenin 1 [Source:HGNC Symbol;Acc:HGNC:17447]
ENSCJAG00000009446	KNOWN_BY_PROJECTION	protein_coding	UBE2Q1	chromosome:C_jacchus3.2.1:18:1:47448759:1	8508552	8518478	R	ubiquitin-conjugating enzyme E2Q family member 1 [Source:HGNC Symbol;Acc:HGNC:15698]
ENSCJAG00000000490	KNOWN	protein_coding	CTNNBIP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	44382211	44586714	R	Beta-catenin-interacting protein 1 {ECO:0000313|EMBL:JAB06739.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000836}  [Source:UniProtKB/TrEMBL;Acc:F6PXU5]
ENSCJAG00000002456	KNOWN	protein_coding	SLC25A14	chromosome:C_jacchus3.2.1:X:1:142054208:1	118237840	118281152	D	Brain mitochondrial carrier protein 1 isoform UCP5L {ECO:0000313|EMBL:JAB13000.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004535}  [Source:UniProtKB/TrEMBL;Acc:F7CJT9]
ENSCJAG00000005492	KNOWN	protein_coding	LZIC	chromosome:C_jacchus3.2.1:7:1:155834243:1	44480109	44493172	R	Protein LZIC {ECO:0000313|EMBL:JAB09935.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010048}  [Source:UniProtKB/TrEMBL;Acc:F7BV86]
ENSCJAG00000031312	NOVEL	protein_coding	ENSCJAG00000031312	chromosome:C_jacchus3.2.1:5:1:159171411:1	123816477	123818582	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046953}  [Source:UniProtKB/TrEMBL;Acc:F7I3H6]
ENSCJAG00000006807	KNOWN	protein_coding	PYGL	chromosome:C_jacchus3.2.1:10:1:132174527:1	75541525	75585210	R	Phosphorylase {ECO:0000256|RuleBase:RU000587}  [Source:UniProtKB/TrEMBL;Acc:F7IAB7]
ENSCJAG00000014808	KNOWN	protein_coding	RAB37	chromosome:C_jacchus3.2.1:5:1:159171411:1	123891209	123961951	D	Ras-related protein Rab-37 isoform 3 {ECO:0000313|EMBL:JAB24793.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027336}  [Source:UniProtKB/TrEMBL;Acc:F7DEI6]
ENSCJAG00000013307	KNOWN	protein_coding	LEAP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	72597364	72599987	R	Liver-expressed antimicrobial peptide 2 {ECO:0000313|EMBL:JAB42145.1}; Liver-expressed antimicrobial peptide 2 (Predicted) {ECO:0000313|EMBL:ABZ10529.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024435}  [Source:UniProtKB/TrEMBL;Acc:B0KWP9]
ENSCJAG00000015192	KNOWN_BY_PROJECTION	protein_coding	SULT4A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	203853666	203887914	R	sulfotransferase family 4A, member 1 [Source:HGNC Symbol;Acc:HGNC:14903]
ENSCJAG00000013303	KNOWN	protein_coding	UQCRQ	chromosome:C_jacchus3.2.1:2:1:204313951:1	72604534	72605549	R	Cytochrome b-c1 complex subunit 8 {ECO:0000313|EMBL:JAB14809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024417}  [Source:UniProtKB/TrEMBL;Acc:F7FA82]
ENSCJAG00000013297	KNOWN_BY_PROJECTION	protein_coding	GDF9	chromosome:C_jacchus3.2.1:2:1:204313951:1	72605327	72611956	D	growth differentiation factor 9 [Source:HGNC Symbol;Acc:HGNC:4224]
ENSCJAG00000013275	KNOWN_BY_PROJECTION	protein_coding	SHROOM1	chromosome:C_jacchus3.2.1:2:1:204313951:1	72646754	72648661	D	shroom family member 1 [Source:HGNC Symbol;Acc:HGNC:24084]
ENSCJAG00000005483	KNOWN	protein_coding	NMNAT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	44493857	44525879	D	Nicotinamide mononucleotide adenylyltransferase 1 {ECO:0000313|EMBL:JAB02336.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010016}  [Source:UniProtKB/TrEMBL;Acc:F7CQY6]
ENSCJAG00000013269	KNOWN_BY_PROJECTION	protein_coding	SOWAHA	chromosome:C_jacchus3.2.1:2:1:204313951:1	72655700	72657485	R	sosondowah ankyrin repeat domain family member A [Source:HGNC Symbol;Acc:HGNC:27033]
ENSCJAG00000014794	KNOWN_BY_PROJECTION	protein_coding	SLC9A3R1	chromosome:C_jacchus3.2.1:5:1:159171411:1	123963230	123984134	D	solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 [Source:HGNC Symbol;Acc:HGNC:11075]
ENSCJAG00000005470	KNOWN	protein_coding	RBP7	chromosome:C_jacchus3.2.1:7:1:155834243:1	44541983	44572132	D	Retinoid-binding protein 7 {ECO:0000313|EMBL:JAB02534.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009993}  [Source:UniProtKB/TrEMBL;Acc:F7HC29]
ENSCJAG00000013225	KNOWN	protein_coding	SEPT8	chromosome:C_jacchus3.2.1:2:1:204313951:1	72693644	72715901	D	Septin-8 {ECO:0000313|Ensembl:ENSCJAP00000009215}  [Source:UniProtKB/TrEMBL;Acc:F7IB31]
ENSCJAG00000037996	NOVEL	protein_coding	ENSCJAG00000037996	chromosome:C_jacchus3.2.1:7:1:155834243:1	44564775	44568001	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052063}  [Source:UniProtKB/TrEMBL;Acc:F7IGY2]
ENSCJAG00000013317	NOVEL	protein_coding	ENSCJAG00000013317	chromosome:C_jacchus3.2.1:7:1:155834243:1	44575232	44583871	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024437}  [Source:UniProtKB/TrEMBL;Acc:F7EWZ2]
ENSCJAG00000033575	KNOWN	protein_coding	INSL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	16853701	16859487	R	Insulin-like 3 Insulin-like 3 B chain Insulin-like 3 A chain [Source:UniProtKB/Swiss-Prot;Acc:O97937]
ENSCJAG00000009523	KNOWN	protein_coding	CHRNB2	chromosome:C_jacchus3.2.1:18:1:47448759:1	8529549	8541647	D	Neuronal acetylcholine receptor subunit beta-2 {ECO:0000313|EMBL:JAB17348.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017473}  [Source:UniProtKB/TrEMBL;Acc:F7HLC2]
ENSCJAG00000013992	KNOWN_BY_PROJECTION	protein_coding	JAK3	chromosome:C_jacchus3.2.1:22:1:49145316:1	16864114	16870475	R	Janus kinase 3 [Source:HGNC Symbol;Acc:HGNC:6193]
ENSCJAG00000014006	KNOWN_BY_PROJECTION	protein_coding	RPL18A	chromosome:C_jacchus3.2.1:22:1:49145316:1	16899296	16902527	D	ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
ENSCJAG00000002436	KNOWN	protein_coding	RBMX2	chromosome:C_jacchus3.2.1:X:1:142054208:1	118307127	118319578	D	RNA-binding motif protein, X-linked 2 {ECO:0000313|EMBL:JAB13296.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004466}  [Source:UniProtKB/TrEMBL;Acc:F6XF41]
ENSCJAG00000009410	KNOWN_BY_PROJECTION	protein_coding	ADAR	chromosome:C_jacchus3.2.1:18:1:47448759:1	8543689	8572398	R	adenosine deaminase, RNA-specific [Source:HGNC Symbol;Acc:HGNC:225]
ENSCJAG00000014011	KNOWN_BY_PROJECTION	protein_coding	SLC5A5	chromosome:C_jacchus3.2.1:22:1:49145316:1	16912670	16934589	D	solute carrier family 5 (sodium/iodide cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:11040]
ENSCJAG00000013222	KNOWN_BY_PROJECTION	protein_coding	CCNI2	chromosome:C_jacchus3.2.1:2:1:204313951:1	72721989	72725366	R	cyclin I family, member 2 [Source:HGNC Symbol;Acc:HGNC:33869]
ENSCJAG00000014020	KNOWN	protein_coding	CCDC124	chromosome:C_jacchus3.2.1:22:1:49145316:1	16976990	16988640	D	Coiled-coil domain-containing protein 124 {ECO:0000313|EMBL:JAB02029.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025786}  [Source:UniProtKB/TrEMBL;Acc:F6URD8]
ENSCJAG00000014780	KNOWN	protein_coding	TMEM104	chromosome:C_jacchus3.2.1:5:1:159171411:1	123990369	124056703	D	Transmembrane protein 104 {ECO:0000313|EMBL:JAB47874.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027225}  [Source:UniProtKB/TrEMBL;Acc:F7GHP9]
ENSCJAG00000014026	KNOWN_BY_PROJECTION	protein_coding	KCNN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	16996587	17052841	D	potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 1 [Source:HGNC Symbol;Acc:HGNC:6290]
ENSCJAG00000036002	KNOWN	protein_coding	ARRDC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	17021360	17063771	D	Arrestin domain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB13986.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025811}  [Source:UniProtKB/TrEMBL;Acc:F7BF67]
ENSCJAG00000031998	NOVEL	protein_coding	ENSCJAG00000031998	chromosome:C_jacchus3.2.1:22:1:49145316:1	17109265	17112437	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025836}  [Source:UniProtKB/TrEMBL;Acc:F7AWF8]
ENSCJAG00000005351	KNOWN	protein_coding	UBE4B	chromosome:C_jacchus3.2.1:7:1:155834243:1	44586873	44743469	D	Ubiquitin conjugation factor E4 B isoform 2 {ECO:0000313|EMBL:JAB04620.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009969}  [Source:UniProtKB/TrEMBL;Acc:F7HC77]
ENSCJAG00000009390	KNOWN_BY_PROJECTION	protein_coding	KCNN3	chromosome:C_jacchus3.2.1:18:1:47448759:1	8669698	8841260	R	potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 3 [Source:HGNC Symbol;Acc:HGNC:6292]
ENSCJAG00000014045	NOVEL	protein_coding	ENSCJAG00000014045	chromosome:C_jacchus3.2.1:22:1:49145316:1	17123592	17133354	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025818}  [Source:UniProtKB/TrEMBL;Acc:F7BF13]
ENSCJAG00000013116	KNOWN	protein_coding	MA_M002_JSM116D85R	chromosome:C_jacchus3.2.1:2:1:204313951:1	72733438	72792210	D	Kinesin-like protein KIF3A (Predicted) {ECO:0000313|EMBL:ABZ10525.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024250}  [Source:UniProtKB/TrEMBL;Acc:B0KWP5]
ENSCJAG00000014057	KNOWN_BY_PROJECTION	protein_coding	MAST3	chromosome:C_jacchus3.2.1:22:1:49145316:1	17174231	17203336	D	microtubule associated serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:19036]
ENSCJAG00000014791	NOVEL	protein_coding	ENSCJAG00000014791	chromosome:C_jacchus3.2.1:5:1:159171411:1	123996716	123997830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027239}  [Source:UniProtKB/TrEMBL;Acc:F7G6G8]
ENSCJAG00000014073	KNOWN	protein_coding	PIK3R2	chromosome:C_jacchus3.2.1:22:1:49145316:1	17209910	17225639	D	Phosphatidylinositol 3-kinase regulatory subunit beta {ECO:0000313|EMBL:JAB03914.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025887}  [Source:UniProtKB/TrEMBL;Acc:F6ZCI2]
ENSCJAG00000005287	KNOWN_BY_PROJECTION	protein_coding	CNN2	chromosome:C_jacchus3.2.1:4:1:171630274:1	110517396	110518300	D	calponin 2 [Source:HGNC Symbol;Acc:HGNC:2156]
ENSCJAG00000014754	KNOWN_BY_PROJECTION	protein_coding	GRIN2C	chromosome:C_jacchus3.2.1:5:1:159171411:1	124058951	124081936	R	glutamate receptor, ionotropic, N-methyl D-aspartate 2C [Source:HGNC Symbol;Acc:HGNC:4587]
ENSCJAG00000014094	KNOWN_BY_PROJECTION	protein_coding	IFI30	chromosome:C_jacchus3.2.1:22:1:49145316:1	17228480	17234189	D	interferon, gamma-inducible protein 30 [Source:HGNC Symbol;Acc:HGNC:5398]
ENSCJAG00000005248	KNOWN_BY_PROJECTION	protein_coding	GTF3C6	chromosome:C_jacchus3.2.1:4:1:171630274:1	110611372	110619685	D	general transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:HGNC Symbol;Acc:HGNC:20872]
ENSCJAG00000014408	KNOWN_BY_PROJECTION	protein_coding	ENOX2	chromosome:C_jacchus3.2.1:X:1:142054208:1	118520555	118613025	R	ecto-NOX disulfide-thiol exchanger 2 [Source:HGNC Symbol;Acc:HGNC:2259]
ENSCJAG00000014104	KNOWN	protein_coding	MPV17L2	chromosome:C_jacchus3.2.1:22:1:49145316:1	17242569	17245109	D	Mpv17-like protein 2 {ECO:0000313|EMBL:JAB05511.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025914}  [Source:UniProtKB/TrEMBL;Acc:F6X2A6]
ENSCJAG00000009383	KNOWN	protein_coding	PMVK	chromosome:C_jacchus3.2.1:18:1:47448759:1	8894954	8908024	R	Phosphomevalonate kinase {ECO:0000313|EMBL:JAB05286.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017179}  [Source:UniProtKB/TrEMBL;Acc:F7IA91]
ENSCJAG00000005212	KNOWN	protein_coding	RPF2	chromosome:C_jacchus3.2.1:4:1:171630274:1	110626193	110668176	D	Ribosome production factor 2 homolog {ECO:0000313|EMBL:JAB02389.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009579}  [Source:UniProtKB/TrEMBL;Acc:F7H7H3]
ENSCJAG00000014717	KNOWN_BY_PROJECTION	protein_coding	FADS6	chromosome:C_jacchus3.2.1:5:1:159171411:1	124100299	124117484	R	fatty acid desaturase 6 [Source:HGNC Symbol;Acc:HGNC:30459]
ENSCJAG00000015166	KNOWN_BY_PROJECTION	protein_coding	PNPLA5	chromosome:C_jacchus3.2.1:1:1:210400635:1	203903115	203915611	R	patatin-like phospholipase domain containing 5 [Source:HGNC Symbol;Acc:HGNC:24888]
ENSCJAG00000009346	KNOWN_BY_PROJECTION	protein_coding	PBXIP1	chromosome:C_jacchus3.2.1:18:1:47448759:1	8922284	8934023	R	pre-B-cell leukemia homeobox interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:21199]
ENSCJAG00000014111	KNOWN	protein_coding	RAB3A	chromosome:C_jacchus3.2.1:22:1:49145316:1	17245276	17253354	R	Ras-related protein Rab-3A {ECO:0000313|EMBL:JAB02481.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025935}  [Source:UniProtKB/TrEMBL;Acc:F6WFR3]
ENSCJAG00000014706	KNOWN_BY_PROJECTION	protein_coding	USH1G	chromosome:C_jacchus3.2.1:5:1:159171411:1	124133806	124139726	R	Usher syndrome 1G (autosomal recessive) [Source:HGNC Symbol;Acc:HGNC:16356]
ENSCJAG00000014442	KNOWN_BY_PROJECTION	protein_coding	ARHGAP36	chromosome:C_jacchus3.2.1:X:1:142054208:1	118967446	118998706	D	Rho GTPase activating protein 36 [Source:HGNC Symbol;Acc:HGNC:26388]
ENSCJAG00000014684	KNOWN_BY_PROJECTION	protein_coding	OTOP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	124140721	124149618	D	otopetrin 2 [Source:HGNC Symbol;Acc:HGNC:19657]
ENSCJAG00000015142	KNOWN	protein_coding	PNPLA3	chromosome:C_jacchus3.2.1:1:1:210400635:1	203945291	203968259	D	Patatin-like phospholipase domain-containing protein 3 {ECO:0000313|EMBL:JAB07547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027949}  [Source:UniProtKB/TrEMBL;Acc:F7DAU5]
ENSCJAG00000009336	KNOWN_BY_PROJECTION	protein_coding	PYGO2	chromosome:C_jacchus3.2.1:18:1:47448759:1	8934905	9199821	R	pygopus family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:30257]
ENSCJAG00000014122	KNOWN_BY_PROJECTION	protein_coding	PDE4C	chromosome:C_jacchus3.2.1:22:1:49145316:1	17261792	17286496	R	phosphodiesterase 4C, cAMP-specific [Source:HGNC Symbol;Acc:HGNC:8782]
ENSCJAG00000013083	KNOWN	protein_coding	IL4	chromosome:C_jacchus3.2.1:2:1:204313951:1	72789737	72798038	R	Callithrix jacchus interleukin 4 (IL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001257228]
ENSCJAG00000014679	KNOWN_BY_PROJECTION	protein_coding	OTOP3	chromosome:C_jacchus3.2.1:5:1:159171411:1	124158252	124168491	D	otopetrin 3 [Source:HGNC Symbol;Acc:HGNC:19658]
ENSCJAG00000009236	KNOWN	protein_coding	SHC1	chromosome:C_jacchus3.2.1:18:1:47448759:1	8940156	8949005	R	SHC-transforming protein 1 isoform 3 {ECO:0000313|EMBL:JAB15400.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016965}  [Source:UniProtKB/TrEMBL;Acc:F7C2B3]
ENSCJAG00000014463	KNOWN_BY_PROJECTION	protein_coding	IGSF1	chromosome:C_jacchus3.2.1:X:1:142054208:1	119167724	119183739	R	immunoglobulin superfamily, member 1 [Source:HGNC Symbol;Acc:HGNC:5948]
ENSCJAG00000032404	NOVEL	protein_coding	ENSCJAG00000032404	chromosome:C_jacchus3.2.1:X:1:142054208:1	119223294	119227824	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051392}  [Source:UniProtKB/TrEMBL;Acc:F6WN50]
ENSCJAG00000013071	KNOWN	protein_coding	IL13	chromosome:C_jacchus3.2.1:2:1:204313951:1	72809878	72812774	R	Callithrix jacchus interleukin 13 (IL13), mRNA. [Source:RefSeq mRNA;Acc:NM_001267754]
ENSCJAG00000005204	KNOWN_BY_PROJECTION	protein_coding	SLC16A10	chromosome:C_jacchus3.2.1:4:1:171630274:1	110746101	110936679	D	solute carrier family 16 (aromatic amino acid transporter), member 10 [Source:HGNC Symbol;Acc:HGNC:17027]
ENSCJAG00000014526	NOVEL	protein_coding	ENSCJAG00000014526	chromosome:C_jacchus3.2.1:X:1:142054208:1	119439365	119440385	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7IN88]
ENSCJAG00000015070	KNOWN	protein_coding	SAMM50	chromosome:C_jacchus3.2.1:1:1:210400635:1	203975964	204020002	D	Sorting and assembly machinery component 50 homolog {ECO:0000313|EMBL:JAB09070.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027904}  [Source:UniProtKB/TrEMBL;Acc:F7E7J6]
ENSCJAG00000005207	NOVEL	pseudogene	ENSCJAG00000005207	chromosome:C_jacchus3.2.1:4:1:171630274:1	110855726	110856532	R	<no descrition>
ENSCJAG00000005198	KNOWN_BY_PROJECTION	protein_coding	KIAA1919	chromosome:C_jacchus3.2.1:4:1:171630274:1	110975495	110981978	D	KIAA1919 [Source:HGNC Symbol;Acc:HGNC:21053]
ENSCJAG00000005032	KNOWN_BY_PROJECTION	protein_coding	REV3L	chromosome:C_jacchus3.2.1:4:1:171630274:1	111011455	111210036	R	REV3-like, polymerase (DNA directed), zeta, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]
ENSCJAG00000014648	KNOWN_BY_PROJECTION	protein_coding	HID1	chromosome:C_jacchus3.2.1:5:1:159171411:1	124169826	124192782	R	HID1 domain containing [Source:HGNC Symbol;Acc:HGNC:15736]
ENSCJAG00000014143	NOVEL	pseudogene	ENSCJAG00000014143	chromosome:C_jacchus3.2.1:22:1:49145316:1	17299658	17300141	R	<no descrition>
ENSCJAG00000014148	KNOWN_BY_PROJECTION	protein_coding	KIAA1683	chromosome:C_jacchus3.2.1:22:1:49145316:1	17317532	17327699	R	KIAA1683 [Source:HGNC Symbol;Acc:HGNC:29350]
ENSCJAG00000014171	KNOWN_BY_PROJECTION	protein_coding	LSM4	chromosome:C_jacchus3.2.1:22:1:49145316:1	17370136	17390838	R	LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17259]
ENSCJAG00000014176	KNOWN_BY_PROJECTION	protein_coding	PGPEP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	17406705	17428668	D	pyroglutamyl-peptidase I [Source:HGNC Symbol;Acc:HGNC:13568]
ENSCJAG00000014184	NOVEL	protein_coding	ENSCJAG00000014184	chromosome:C_jacchus3.2.1:22:1:49145316:1	17452140	17455163	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026075}  [Source:UniProtKB/TrEMBL;Acc:F7HK89]
ENSCJAG00000033635	NOVEL	protein_coding	ENSCJAG00000033635	chromosome:C_jacchus3.2.1:18:1:47448759:1	8953141	8959057	D	<no descrition>
ENSCJAG00000006884	KNOWN_BY_PROJECTION	protein_coding	TRIM9	chromosome:C_jacchus3.2.1:10:1:132174527:1	75613831	75665457	R	tripartite motif containing 9 [Source:HGNC Symbol;Acc:HGNC:16288]
ENSCJAG00000009320	KNOWN_BY_PROJECTION	protein_coding	FLAD1	chromosome:C_jacchus3.2.1:18:1:47448759:1	8963585	8970222	D	flavin adenine dinucleotide synthetase 1 [Source:HGNC Symbol;Acc:HGNC:24671]
ENSCJAG00000009317	NOVEL	pseudogene	ENSCJAG00000009317	chromosome:C_jacchus3.2.1:18:1:47448759:1	8973192	8973912	D	<no descrition>
ENSCJAG00000014527	KNOWN_BY_PROJECTION	protein_coding	STK26	chromosome:C_jacchus3.2.1:X:1:142054208:1	119873550	119926506	D	serine/threonine protein kinase 26 [Source:HGNC Symbol;Acc:HGNC:18174]
ENSCJAG00000005184	KNOWN_BY_PROJECTION	protein_coding	KIF1B	chromosome:C_jacchus3.2.1:7:1:155834243:1	44795007	44959135	D	kinesin family member 1B [Source:HGNC Symbol;Acc:HGNC:16636]
ENSCJAG00000009307	KNOWN	protein_coding	ZBTB7B	chromosome:C_jacchus3.2.1:18:1:47448759:1	8982300	8998292	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043841}  [Source:UniProtKB/TrEMBL;Acc:F7IA11]
ENSCJAG00000014185	KNOWN_BY_PROJECTION	protein_coding	SSBP4	chromosome:C_jacchus3.2.1:22:1:49145316:1	17485850	17503543	D	single stranded DNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:15676]
ENSCJAG00000014605	KNOWN	protein_coding	KCTD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	124183442	124281138	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026898}  [Source:UniProtKB/TrEMBL;Acc:F7HZN5]
ENSCJAG00000006893	KNOWN	protein_coding	TMX1	chromosome:C_jacchus3.2.1:10:1:132174527:1	75808567	75825383	D	Thioredoxin-related transmembrane protein 1 {ECO:0000313|EMBL:JAB05318.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012769}  [Source:UniProtKB/TrEMBL;Acc:F6RG11]
ENSCJAG00000009296	KNOWN_BY_PROJECTION	protein_coding	DCST2	chromosome:C_jacchus3.2.1:18:1:47448759:1	8998303	9016865	R	DC-STAMP domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26562]
ENSCJAG00000014640	KNOWN_BY_PROJECTION	protein_coding	CDR2L	chromosome:C_jacchus3.2.1:5:1:159171411:1	124209965	124230693	D	cerebellar degeneration-related protein 2-like [Source:HGNC Symbol;Acc:HGNC:29999]
ENSCJAG00000014638	KNOWN	protein_coding	ICT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	124238879	124249166	D	Peptidyl-tRNA hydrolase ICT1, mitochondrial {ECO:0000313|EMBL:JAB02169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026936}  [Source:UniProtKB/TrEMBL;Acc:F7HPD3]
ENSCJAG00000013049	NOVEL	protein_coding	ENSCJAG00000013049	chromosome:C_jacchus3.2.1:2:1:204313951:1	72828592	72887681	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023983}  [Source:UniProtKB/TrEMBL;Acc:F7EFJ3]
ENSCJAG00000013034	KNOWN	protein_coding	IL5	chromosome:C_jacchus3.2.1:2:1:204313951:1	72900562	72902941	D	Callithrix jacchus interleukin 5 (colony-stimulating factor, eosinophil) (IL5), mRNA. [Source:RefSeq mRNA;Acc:NM_001257233]
ENSCJAG00000004951	KNOWN_BY_PROJECTION	protein_coding	TRAF3IP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	111281168	111328718	R	TRAF3 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:1343]
ENSCJAG00000009273	KNOWN_BY_PROJECTION	protein_coding	DCST1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9016987	9038316	D	DC-STAMP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26539]
ENSCJAG00000015066	KNOWN_BY_PROJECTION	protein_coding	PARVB	chromosome:C_jacchus3.2.1:1:1:210400635:1	204023075	204194375	D	parvin, beta [Source:HGNC Symbol;Acc:HGNC:14653]
ENSCJAG00000013013	KNOWN	protein_coding	IRF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	72963631	72971638	D	Interferon regulatory factor {ECO:0000256|PIRNR:PIRNR038196}  [Source:UniProtKB/TrEMBL;Acc:B0KWP0]
ENSCJAG00000000029	KNOWN	protein_coding	PARVG	chromosome:C_jacchus3.2.1:1:1:210400635:1	204205703	204232693	D	Gamma-parvin isoform 1 {ECO:0000313|EMBL:JAB01794.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000053}  [Source:UniProtKB/TrEMBL;Acc:F7H433]
ENSCJAG00000013010	NOVEL	pseudogene	ENSCJAG00000013010	chromosome:C_jacchus3.2.1:2:1:204313951:1	73023300	73023984	D	<no descrition>
ENSCJAG00000014622	KNOWN	protein_coding	ENSCJAG00000014622	chromosome:C_jacchus3.2.1:5:1:159171411:1	124262308	124267862	R	ATP synthase subunit d, mitochondrial isoform a {ECO:0000313|EMBL:JAB07962.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026929}  [Source:UniProtKB/TrEMBL;Acc:F7HPL0]
ENSCJAG00000005349	NOVEL	protein_coding	ENSCJAG00000005349	chromosome:C_jacchus3.2.1:7:1:155834243:1	44796107	44796572	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009772}  [Source:UniProtKB/TrEMBL;Acc:F7GWS0]
ENSCJAG00000014598	KNOWN_BY_PROJECTION	protein_coding	SLC16A5	chromosome:C_jacchus3.2.1:5:1:159171411:1	124310048	124327304	D	solute carrier family 16 (monocarboxylate transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:10926]
ENSCJAG00000014230	KNOWN_BY_PROJECTION	protein_coding	ISYNA1	chromosome:C_jacchus3.2.1:22:1:49145316:1	17503773	17589562	R	inositol-3-phosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:29821]
ENSCJAG00000014590	KNOWN	protein_coding	ARMC7	chromosome:C_jacchus3.2.1:5:1:159171411:1	124331633	124345416	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026866}  [Source:UniProtKB/TrEMBL;Acc:F7I209]
ENSCJAG00000012972	KNOWN_BY_PROJECTION	protein_coding	SLC22A5	chromosome:C_jacchus3.2.1:2:1:204313951:1	73071926	73096976	R	solute carrier family 22 (organic cation/carnitine transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:10969]
ENSCJAG00000014578	KNOWN	protein_coding	NT5C	chromosome:C_jacchus3.2.1:5:1:159171411:1	124346889	124348461	R	5'(3')-deoxyribonucleotidase, cytosolic type isoform 1 {ECO:0000313|EMBL:JAB03657.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026856}  [Source:UniProtKB/TrEMBL;Acc:F7I4A5]
ENSCJAG00000006899	NOVEL	pseudogene	ENSCJAG00000006899	chromosome:C_jacchus3.2.1:10:1:132174527:1	75873609	75874629	R	<no descrition>
ENSCJAG00000005090	KNOWN	protein_coding	PGD	chromosome:C_jacchus3.2.1:7:1:155834243:1	44983211	45002047	D	6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}  [Source:UniProtKB/TrEMBL;Acc:F7G049]
ENSCJAG00000006907	KNOWN_BY_PROJECTION	protein_coding	FRMD6	chromosome:C_jacchus3.2.1:10:1:132174527:1	76289309	76332027	D	FERM domain containing 6 [Source:HGNC Symbol;Acc:HGNC:19839]
ENSCJAG00000014601	KNOWN_BY_PROJECTION	protein_coding	FRMD7	chromosome:C_jacchus3.2.1:X:1:142054208:1	119927570	119978484	R	FERM domain containing 7 [Source:HGNC Symbol;Acc:HGNC:8079]
ENSCJAG00000006920	KNOWN	protein_coding	GNG2	chromosome:C_jacchus3.2.1:10:1:132174527:1	76433052	76543616	D	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F6PY28]
ENSCJAG00000012966	NOVEL	protein_coding	SLC22A4	chromosome:C_jacchus3.2.1:2:1:204313951:1	73121920	73177346	R	Solute carrier family 22 member 4 (Predicted) {ECO:0000313|EMBL:ABZ10517.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023773}  [Source:UniProtKB/TrEMBL;Acc:B0KWN7]
ENSCJAG00000008436	KNOWN	protein_coding	KIAA1644	chromosome:C_jacchus3.2.1:1:1:210400635:1	204271449	204306563	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015526}; Uncharacterized protein KIAA1644 {ECO:0000313|EMBL:JAB04423.1}  [Source:UniProtKB/TrEMBL;Acc:F7EM77]
ENSCJAG00000014628	KNOWN_BY_PROJECTION	protein_coding	RAP2C	chromosome:C_jacchus3.2.1:X:1:142054208:1	120048016	120054326	R	RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21165]
ENSCJAG00000016200	KNOWN	protein_coding	ARHGAP8	chromosome:C_jacchus3.2.1:1:1:210400635:1	204405645	204474765	D	rho GTPase-activating protein 8  [Source:RefSeq peptide;Acc:NP_001191320]
ENSCJAG00000006959	KNOWN_BY_PROJECTION	protein_coding	NID2	chromosome:C_jacchus3.2.1:10:1:132174527:1	76471118	76645528	R	nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:HGNC:13389]
ENSCJAG00000004080	KNOWN_BY_PROJECTION	protein_coding	MBNL3	chromosome:C_jacchus3.2.1:X:1:142054208:1	120219010	120341850	R	muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
ENSCJAG00000005085	KNOWN	protein_coding	CORT	chromosome:C_jacchus3.2.1:7:1:155834243:1	45038499	45040081	D	Callithrix jacchus cortistatin (CORT), mRNA. [Source:RefSeq mRNA;Acc:NM_001204927]
ENSCJAG00000016221	NOVEL	pseudogene	ENSCJAG00000016221	chromosome:C_jacchus3.2.1:1:1:210400635:1	204489367	204490086	R	<no descrition>
ENSCJAG00000005074	KNOWN	protein_coding	DFFA	chromosome:C_jacchus3.2.1:7:1:155834243:1	45047322	45058648	R	DNAation factor subunit alpha isoform 2 {ECO:0000313|EMBL:JAB11804.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044541}  [Source:UniProtKB/TrEMBL;Acc:F7FX54]
ENSCJAG00000015305	NOVEL	pseudogene	ENSCJAG00000015305	chromosome:C_jacchus3.2.1:22:1:49145316:1	17512009	17512749	R	<no descrition>
ENSCJAG00000015279	KNOWN_BY_PROJECTION	protein_coding	ELL	chromosome:C_jacchus3.2.1:22:1:49145316:1	17513016	17657770	R	elongation factor RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]
ENSCJAG00000012942	KNOWN	protein_coding	PDLIM4	chromosome:C_jacchus3.2.1:2:1:204313951:1	73198619	73216394	R	PDZ and LIM domain 4 (Predicted) {ECO:0000313|EMBL:ABZ10516.1}; PDZ and LIM domain protein 4 isoform 1 {ECO:0000313|EMBL:JAB09554.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023759}  [Source:UniProtKB/TrEMBL;Acc:B0KWQ6]
ENSCJAG00000004130	KNOWN_BY_PROJECTION	protein_coding	HS6ST2	chromosome:C_jacchus3.2.1:X:1:142054208:1	120504952	120587988	R	heparan sulfate 6-O-sulfotransferase 2 [Source:HGNC Symbol;Acc:HGNC:19133]
ENSCJAG00000004138	NOVEL	pseudogene	ENSCJAG00000004138	chromosome:C_jacchus3.2.1:X:1:142054208:1	120878553	120879788	R	<no descrition>
ENSCJAG00000004139	KNOWN_BY_PROJECTION	protein_coding	USP26	chromosome:C_jacchus3.2.1:X:1:142054208:1	120891291	120894038	R	ubiquitin specific peptidase 26 [Source:HGNC Symbol;Acc:HGNC:13485]
ENSCJAG00000016227	KNOWN	protein_coding	PHF21B	chromosome:C_jacchus3.2.1:1:1:210400635:1	204500598	204623005	R	PHD finger protein 21B isoform 2 {ECO:0000313|EMBL:JAB49689.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043133}  [Source:UniProtKB/TrEMBL;Acc:F7IMA3]
ENSCJAG00000015259	NOVEL	protein_coding	ENSCJAG00000015259	chromosome:C_jacchus3.2.1:22:1:49145316:1	17537842	17552204	R	<no descrition>
ENSCJAG00000012936	NOVEL	protein_coding	P4HA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	73259355	73284385	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045656}  [Source:UniProtKB/TrEMBL;Acc:F6Q2L8]
ENSCJAG00000004145	NOVEL	pseudogene	ENSCJAG00000004145	chromosome:C_jacchus3.2.1:X:1:142054208:1	121033543	121034024	D	<no descrition>
ENSCJAG00000005051	NOVEL	protein_coding	ENSCJAG00000005051	chromosome:C_jacchus3.2.1:7:1:155834243:1	45061032	45214174	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049382}  [Source:UniProtKB/TrEMBL;Acc:F6XV44]
ENSCJAG00000004151	KNOWN	protein_coding	GPC4	chromosome:C_jacchus3.2.1:X:1:142054208:1	121190576	121318326	R	Glypican-4 {ECO:0000313|EMBL:JAB07309.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042930}  [Source:UniProtKB/TrEMBL;Acc:F6W6Z1]
ENSCJAG00000005043	KNOWN_BY_PROJECTION	protein_coding	CASZ1	chromosome:C_jacchus3.2.1:7:1:155834243:1	45223567	45246499	R	castor zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:26002]
ENSCJAG00000004878	KNOWN	protein_coding	FYN	chromosome:C_jacchus3.2.1:4:1:171630274:1	111387215	111609121	R	Tyrosine-protein kinase Fyn isoform a {ECO:0000313|EMBL:JAB09120.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009029}  [Source:UniProtKB/TrEMBL;Acc:F7IB43]
ENSCJAG00000031349	NOVEL	protein_coding	ENSCJAG00000031349	chromosome:C_jacchus3.2.1:7:1:155834243:1	45540970	45543479	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045809}  [Source:UniProtKB/TrEMBL;Acc:F6R828]
ENSCJAG00000004195	KNOWN_BY_PROJECTION	protein_coding	GPC3	chromosome:C_jacchus3.2.1:X:1:142054208:1	121440281	121914243	R	glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
ENSCJAG00000016242	KNOWN	protein_coding	NUP50	chromosome:C_jacchus3.2.1:1:1:210400635:1	204785954	204809618	D	Nuclear pore complex protein Nup50 isoform b {ECO:0000313|EMBL:JAB08554.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029909}  [Source:UniProtKB/TrEMBL;Acc:F7IC26]
ENSCJAG00000009075	KNOWN_BY_PROJECTION	protein_coding	ADAM15	chromosome:C_jacchus3.2.1:18:1:47448759:1	9038686	9052217	D	ADAM metallopeptidase domain 15 [Source:HGNC Symbol;Acc:HGNC:193]
ENSCJAG00000012924	NOVEL	protein_coding	CSF2	chromosome:C_jacchus3.2.1:2:1:204313951:1	73392388	73394754	R	Colony stimulating factor 2 (Predicted) {ECO:0000313|EMBL:ABZ10514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023694}  [Source:UniProtKB/TrEMBL;Acc:B0KWQ4]
ENSCJAG00000007479	KNOWN_BY_PROJECTION	protein_coding	KXD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	17566535	17580835	D	KxDL motif containing 1 [Source:HGNC Symbol;Acc:HGNC:28420]
ENSCJAG00000005030	KNOWN_BY_PROJECTION	protein_coding	C1orf127	chromosome:C_jacchus3.2.1:7:1:155834243:1	45551063	45571485	R	chromosome 1 open reading frame 127 [Source:HGNC Symbol;Acc:HGNC:26730]
ENSCJAG00000007470	KNOWN_BY_PROJECTION	protein_coding	UBA52	chromosome:C_jacchus3.2.1:22:1:49145316:1	17584686	17587268	D	ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:HGNC:12458]
ENSCJAG00000012921	KNOWN	protein_coding	MA_M002_JSM762B1F	chromosome:C_jacchus3.2.1:2:1:204313951:1	73407062	73409196	R	Interleukin-3  [Source:UniProtKB/Swiss-Prot;Acc:Q28334]
ENSCJAG00000002400	NOVEL	protein_coding	ENSCJAG00000002400	chromosome:C_jacchus3.2.1:7:1:155834243:1	45592606	45593392	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052196}  [Source:UniProtKB/TrEMBL;Acc:F7HVQ6]
ENSCJAG00000007459	KNOWN	protein_coding	C19ORF60	chromosome:C_jacchus3.2.1:22:1:49145316:1	17589293	17593293	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013876}; Uncharacterized protein C19orf60 isoform 2 {ECO:0000313|EMBL:JAB07401.1}  [Source:UniProtKB/TrEMBL;Acc:F7ACS4]
ENSCJAG00000022049	NOVEL	protein_coding	ENSCJAG00000022049	chromosome:C_jacchus3.2.1:X:1:142054208:1	121760728	121763304	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050934}  [Source:UniProtKB/TrEMBL;Acc:F6TX85]
ENSCJAG00000004236	NOVEL	pseudogene	ENSCJAG00000004236	chromosome:C_jacchus3.2.1:X:1:142054208:1	122154046	122155006	D	<no descrition>
ENSCJAG00000012918	NOVEL	pseudogene	ENSCJAG00000012918	chromosome:C_jacchus3.2.1:2:1:204313951:1	73428403	73429393	R	<no descrition>
ENSCJAG00000002381	KNOWN	protein_coding	TARDBP	chromosome:C_jacchus3.2.1:7:1:155834243:1	45610461	45623289	D	TAR DNA-binding protein 43 {ECO:0000313|EMBL:JAB10433.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004352}  [Source:UniProtKB/TrEMBL;Acc:F7C599]
ENSCJAG00000004238	KNOWN_BY_PROJECTION	protein_coding	PHF6	chromosome:C_jacchus3.2.1:X:1:142054208:1	122275969	122332339	D	PHD finger protein 6 [Source:HGNC Symbol;Acc:HGNC:18145]
ENSCJAG00000007427	KNOWN_BY_PROJECTION	protein_coding	CRLF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	17593805	17848409	R	cytokine receptor-like factor 1 [Source:HGNC Symbol;Acc:HGNC:2364]
ENSCJAG00000016250	NOVEL	pseudogene	ENSCJAG00000016250	chromosome:C_jacchus3.2.1:1:1:210400635:1	204797268	204798684	D	<no descrition>
ENSCJAG00000016254	NOVEL	protein_coding	ENSCJAG00000016254	chromosome:C_jacchus3.2.1:1:1:210400635:1	204816892	204820585	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043665}  [Source:UniProtKB/TrEMBL;Acc:F7I5F8]
ENSCJAG00000016255	KNOWN_BY_PROJECTION	protein_coding	KIAA0930	chromosome:C_jacchus3.2.1:1:1:210400635:1	204820237	204860811	R	KIAA0930 [Source:HGNC Symbol;Acc:HGNC:1314]
ENSCJAG00000004862	KNOWN_BY_PROJECTION	protein_coding	WISP3	chromosome:C_jacchus3.2.1:4:1:171630274:1	111793813	111812878	D	WNT1 inducible signaling pathway protein 3 [Source:HGNC Symbol;Acc:HGNC:12771]
ENSCJAG00000000538	KNOWN_BY_PROJECTION	protein_coding	PRR5	chromosome:C_jacchus3.2.1:1:1:210400635:1	204923356	204981839	R	proline rich 5 (renal) [Source:HGNC Symbol;Acc:HGNC:31682]
ENSCJAG00000002366	KNOWN_BY_PROJECTION	protein_coding	MASP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	45624048	45649868	R	mannan-binding lectin serine peptidase 2 [Source:HGNC Symbol;Acc:HGNC:6902]
ENSCJAG00000007447	KNOWN_BY_PROJECTION	protein_coding	TMEM59L	chromosome:C_jacchus3.2.1:22:1:49145316:1	17615875	17626179	D	transmembrane protein 59-like [Source:HGNC Symbol;Acc:HGNC:13237]
ENSCJAG00000000545	NOVEL	pseudogene	ENSCJAG00000000545	chromosome:C_jacchus3.2.1:1:1:210400635:1	205016106	205017702	D	<no descrition>
ENSCJAG00000000546	KNOWN_BY_PROJECTION	protein_coding	UPK3A	chromosome:C_jacchus3.2.1:1:1:210400635:1	205037526	205052822	D	uroplakin 3A [Source:HGNC Symbol;Acc:HGNC:12580]
ENSCJAG00000033905	NOVEL	protein_coding	ENSCJAG00000033905	chromosome:C_jacchus3.2.1:1:1:210400635:1	205049793	205050148	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049784}  [Source:UniProtKB/TrEMBL;Acc:F7CBW4]
ENSCJAG00000000548	KNOWN	protein_coding	FAM118A	chromosome:C_jacchus3.2.1:1:1:210400635:1	205078823	205093294	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043749}  [Source:UniProtKB/TrEMBL;Acc:F7HL77]
ENSCJAG00000006926	KNOWN	protein_coding	C14ORF166	chromosome:C_jacchus3.2.1:10:1:132174527:1	76565300	76581669	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012877}  [Source:UniProtKB/TrEMBL;Acc:F6TL07]
ENSCJAG00000014553	KNOWN_BY_PROJECTION	protein_coding	HN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	124351336	124367248	R	hematological and neurological expressed 1 [Source:HGNC Symbol;Acc:HGNC:14569]
ENSCJAG00000000550	KNOWN_BY_PROJECTION	protein_coding	SMC1B	chromosome:C_jacchus3.2.1:1:1:210400635:1	205100190	205189685	R	structural maintenance of chromosomes 1B [Source:HGNC Symbol;Acc:HGNC:11112]
ENSCJAG00000007445	KNOWN	protein_coding	KLHL26	chromosome:C_jacchus3.2.1:22:1:49145316:1	17641696	17671702	D	Kelch-like protein 26 {ECO:0000313|EMBL:JAB27975.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013837}  [Source:UniProtKB/TrEMBL;Acc:F7BFA5]
ENSCJAG00000036562	NOVEL	protein_coding	ENSCJAG00000036562	chromosome:C_jacchus3.2.1:5:1:159171411:1	124351339	124352516	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052497}  [Source:UniProtKB/TrEMBL;Acc:F7HXT0]
ENSCJAG00000004829	KNOWN_BY_PROJECTION	protein_coding	TUBE1	chromosome:C_jacchus3.2.1:4:1:171630274:1	111812749	111830563	R	tubulin, epsilon 1 [Source:HGNC Symbol;Acc:HGNC:20775]
ENSCJAG00000012835	KNOWN	protein_coding	ACSL6	chromosome:C_jacchus3.2.1:2:1:204313951:1	73490300	73749892	D	Long-chain-fatty-acid--CoA ligase 6 isoform b {ECO:0000313|EMBL:JAB22206.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023661}  [Source:UniProtKB/TrEMBL;Acc:F7H7S1]
ENSCJAG00000002354	KNOWN_BY_PROJECTION	protein_coding	SRM	chromosome:C_jacchus3.2.1:7:1:155834243:1	45658172	45662300	R	spermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]
ENSCJAG00000014508	KNOWN_BY_PROJECTION	protein_coding	NUP85	chromosome:C_jacchus3.2.1:5:1:159171411:1	124428737	124469522	D	nucleoporin 85kDa [Source:HGNC Symbol;Acc:HGNC:8734]
ENSCJAG00000019627	KNOWN_BY_PROJECTION	protein_coding	UPF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	17668118	17824698	D	UPF1 regulator of nonsense transcripts homolog (yeast) [Source:HGNC Symbol;Acc:HGNC:9962]
ENSCJAG00000002327	KNOWN	protein_coding	EXOSC10	chromosome:C_jacchus3.2.1:7:1:155834243:1	45669806	45700403	R	Exosome component 10 isoform 1 {ECO:0000313|EMBL:JAB05434.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004218}  [Source:UniProtKB/TrEMBL;Acc:F6YPY2]
ENSCJAG00000007014	NOVEL	protein_coding	ENSCJAG00000007014	chromosome:C_jacchus3.2.1:10:1:132174527:1	76737422	76739820	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013019}  [Source:UniProtKB/TrEMBL;Acc:F7B331]
ENSCJAG00000007025	KNOWN_BY_PROJECTION	protein_coding	PTGDR	chromosome:C_jacchus3.2.1:10:1:132174527:1	76815600	76825132	D	prostaglandin D2 receptor (DP) [Source:HGNC Symbol;Acc:HGNC:9591]
ENSCJAG00000007029	NOVEL	protein_coding	ENSCJAG00000007029	chromosome:C_jacchus3.2.1:10:1:132174527:1	76831385	76832900	D	Small nuclear ribonucleoprotein-associated protein {ECO:0000256|PIRNR:PIRNR037187}  [Source:UniProtKB/TrEMBL;Acc:F7AJF0]
ENSCJAG00000035567	NOVEL	pseudogene	ENSCJAG00000035567	chromosome:C_jacchus3.2.1:10:1:132174527:1	76831446	76831733	D	<no descrition>
ENSCJAG00000033233	NOVEL	protein_coding	ENSCJAG00000033233	chromosome:C_jacchus3.2.1:10:1:132174527:1	76836968	76838989	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020269}  [Source:UniProtKB/TrEMBL;Acc:F7E1N2]
ENSCJAG00000004273	KNOWN_BY_PROJECTION	protein_coding	HPRT1	chromosome:C_jacchus3.2.1:X:1:142054208:1	122364046	122396686	D	hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]
ENSCJAG00000007034	KNOWN_BY_PROJECTION	protein_coding	PTGER2	chromosome:C_jacchus3.2.1:10:1:132174527:1	76874319	76887520	D	prostaglandin E receptor 2 (subtype EP2), 53kDa [Source:HGNC Symbol;Acc:HGNC:9594]
ENSCJAG00000004304	KNOWN_BY_PROJECTION	protein_coding	PLAC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	122473124	122566197	R	placenta-specific 1 [Source:HGNC Symbol;Acc:HGNC:9044]
ENSCJAG00000004310	NOVEL	protein_coding	ENSCJAG00000004310	chromosome:C_jacchus3.2.1:X:1:142054208:1	122557668	122558252	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007799}  [Source:UniProtKB/TrEMBL;Acc:F6WDM4]
ENSCJAG00000007421	KNOWN_BY_PROJECTION	protein_coding	CRTC1	chromosome:C_jacchus3.2.1:22:1:49145316:1	17690279	17783202	D	CREB regulated transcription coactivator 1 [Source:HGNC Symbol;Acc:HGNC:16062]
ENSCJAG00000022546	KNOWN_BY_PROJECTION	protein_coding	RIBC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	205189977	205203564	D	RIB43A domain with coiled-coils 2 [Source:HGNC Symbol;Acc:HGNC:13241]
ENSCJAG00000007440	NOVEL	pseudogene	ENSCJAG00000007440	chromosome:C_jacchus3.2.1:22:1:49145316:1	17748753	17749500	D	<no descrition>
ENSCJAG00000004822	KNOWN	protein_coding	FAM229B	chromosome:C_jacchus3.2.1:4:1:171630274:1	111830490	111840928	D	UPF0731 protein C6orf225 {ECO:0000313|EMBL:JAB01893.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008801}  [Source:UniProtKB/TrEMBL;Acc:F7IJT2]
ENSCJAG00000019660	KNOWN	protein_coding	GDF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	17825412	17827182	R	Embryonic growth/differentiation factor 1 {ECO:0000313|EMBL:JAB31881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036501}  [Source:UniProtKB/TrEMBL;Acc:F7GST7]
ENSCJAG00000004313	KNOWN	protein_coding	FAM122B	chromosome:C_jacchus3.2.1:X:1:142054208:1	122680355	122705041	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007878}  [Source:UniProtKB/TrEMBL;Acc:F7C7V0]
ENSCJAG00000019671	KNOWN_BY_PROJECTION	protein_coding	COPE	chromosome:C_jacchus3.2.1:22:1:49145316:1	17852076	17873033	R	coatomer protein complex, subunit epsilon [Source:HGNC Symbol;Acc:HGNC:2234]
ENSCJAG00000012893	KNOWN_BY_PROJECTION	protein_coding	FBLN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	205266765	205352059	D	fibulin 1 [Source:HGNC Symbol;Acc:HGNC:3600]
ENSCJAG00000014468	KNOWN	protein_coding	GGA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	124470798	124492480	R	ADP-ribosylation factor-binding protein GGA3 isoform short {ECO:0000313|EMBL:JAB27935.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049551}  [Source:UniProtKB/TrEMBL;Acc:F6VFG7]
ENSCJAG00000004360	KNOWN_BY_PROJECTION	protein_coding	FAM122C	chromosome:C_jacchus3.2.1:X:1:142054208:1	122717499	122765920	D	family with sequence similarity 122C [Source:HGNC Symbol;Acc:HGNC:25202]
ENSCJAG00000004376	KNOWN	protein_coding	MOSPD1	chromosome:C_jacchus3.2.1:X:1:142054208:1	122797798	122822596	R	Motile sperm domain-containing protein 1 {ECO:0000313|EMBL:JAB08580.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007964}  [Source:UniProtKB/TrEMBL;Acc:F6Z8Y6]
ENSCJAG00000004703	KNOWN_BY_PROJECTION	protein_coding	LAMA4	chromosome:C_jacchus3.2.1:4:1:171630274:1	111844745	112001725	R	laminin, alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
ENSCJAG00000004401	NOVEL	protein_coding	ENSCJAG00000004401	chromosome:C_jacchus3.2.1:X:1:142054208:1	122870714	122871552	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052074}  [Source:UniProtKB/TrEMBL;Acc:F7IGW7]
ENSCJAG00000034685	NOVEL	pseudogene	ENSCJAG00000034685	chromosome:C_jacchus3.2.1:X:1:142054208:1	122938413	122939644	D	<no descrition>
ENSCJAG00000004404	KNOWN_BY_PROJECTION	protein_coding	FAM127A	chromosome:C_jacchus3.2.1:X:1:142054208:1	122958648	123007167	R	family with sequence similarity 127, member A [Source:HGNC Symbol;Acc:HGNC:2569]
ENSCJAG00000020402	NOVEL	pseudogene	ENSCJAG00000020402	chromosome:C_jacchus3.2.1:X:1:142054208:1	123141055	123141358	D	<no descrition>
ENSCJAG00000020403	KNOWN_BY_PROJECTION	protein_coding	CT55	chromosome:C_jacchus3.2.1:X:1:142054208:1	123167635	123179423	R	cancer/testis antigen 55 [Source:HGNC Symbol;Acc:HGNC:26047]
ENSCJAG00000014458	NOVEL	protein_coding	ENSCJAG00000014458	chromosome:C_jacchus3.2.1:5:1:159171411:1	124492002	124496462	D	<no descrition>
ENSCJAG00000014531	KNOWN	protein_coding	ZNF75D	chromosome:C_jacchus3.2.1:X:1:142054208:1	123194611	123203924	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026757}; Zinc finger protein 75D isoform 1 {ECO:0000313|EMBL:JAB25852.1}  [Source:UniProtKB/TrEMBL;Acc:F7III9]
ENSCJAG00000014435	KNOWN_BY_PROJECTION	protein_coding	MIF4GD	chromosome:C_jacchus3.2.1:5:1:159171411:1	124496522	124500460	R	MIF4G domain containing [Source:HGNC Symbol;Acc:HGNC:24030]
ENSCJAG00000002191	KNOWN_BY_PROJECTION	protein_coding	MTOR	chromosome:C_jacchus3.2.1:7:1:155834243:1	45706862	45864374	R	mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
ENSCJAG00000032155	NOVEL	protein_coding	ENSCJAG00000032155	chromosome:C_jacchus3.2.1:X:1:142054208:1	123211623	123211899	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042772}  [Source:UniProtKB/TrEMBL;Acc:F6UH94]
ENSCJAG00000014517	KNOWN	protein_coding	ZNF449	chromosome:C_jacchus3.2.1:X:1:142054208:1	123245294	123257760	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026724}; Zinc finger protein 449 {ECO:0000313|EMBL:JAB05918.1}  [Source:UniProtKB/TrEMBL;Acc:F7IKZ3]
ENSCJAG00000019692	NOVEL	protein_coding	ENSCJAG00000019692	chromosome:C_jacchus3.2.1:22:1:49145316:1	17862151	17862571	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049475}  [Source:UniProtKB/TrEMBL;Acc:F7AG90]
ENSCJAG00000014469	KNOWN_BY_PROJECTION	protein_coding	DDX26B	chromosome:C_jacchus3.2.1:X:1:142054208:1	123350462	123411459	D	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Source:HGNC Symbol;Acc:HGNC:27334]
ENSCJAG00000019699	KNOWN_BY_PROJECTION	protein_coding	DDX49	chromosome:C_jacchus3.2.1:22:1:49145316:1	17873411	17883838	D	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:HGNC Symbol;Acc:HGNC:18684]
ENSCJAG00000014641	NOVEL	protein_coding	ENSCJAG00000014641	chromosome:C_jacchus3.2.1:22:1:49145316:1	17878952	17879226	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052067}  [Source:UniProtKB/TrEMBL;Acc:F7IGX8]
ENSCJAG00000014414	KNOWN	protein_coding	SLC25A19	chromosome:C_jacchus3.2.1:5:1:159171411:1	124503757	124520234	R	Mitochondrial thiamine pyrophosphate carrier {ECO:0000313|EMBL:JAB07268.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051685}  [Source:UniProtKB/TrEMBL;Acc:F6XVW4]
ENSCJAG00000019706	NOVEL	protein_coding	ENSCJAG00000019706	chromosome:C_jacchus3.2.1:22:1:49145316:1	17884727	17896302	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036618}  [Source:UniProtKB/TrEMBL;Acc:F6PP45]
ENSCJAG00000014616	KNOWN_BY_PROJECTION	protein_coding	FNIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	73760622	73946895	D	folliculin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29418]
ENSCJAG00000009049	KNOWN	protein_coding	EFNA4	chromosome:C_jacchus3.2.1:18:1:47448759:1	9053162	9079356	D	Ephrin-A3 {ECO:0000313|EMBL:JAB14038.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016608}  [Source:UniProtKB/TrEMBL;Acc:F6YLV6]
ENSCJAG00000014385	KNOWN	protein_coding	GRB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	124535390	124622766	R	Growth factor receptor-bound protein 2 isoform 1 {ECO:0000313|EMBL:JAB06085.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026498}  [Source:UniProtKB/TrEMBL;Acc:F7IQR6]
ENSCJAG00000012879	KNOWN_BY_PROJECTION	protein_coding	ATXN10	chromosome:C_jacchus3.2.1:1:1:210400635:1	205419331	205595466	D	ataxin 10 [Source:HGNC Symbol;Acc:HGNC:10549]
ENSCJAG00000019714	KNOWN	protein_coding	SUGP2	chromosome:C_jacchus3.2.1:22:1:49145316:1	17945572	17992659	R	SURP and G-patch domain-containing protein 2 {ECO:0000313|EMBL:JAB36713.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036691}  [Source:UniProtKB/TrEMBL;Acc:F6SZK4]
ENSCJAG00000014327	KNOWN_BY_PROJECTION	protein_coding	KIAA0195	chromosome:C_jacchus3.2.1:5:1:159171411:1	124672125	124722592	D	KIAA0195 [Source:HGNC Symbol;Acc:HGNC:28983]
ENSCJAG00000032204	NOVEL	protein_coding	ENSCJAG00000032204	chromosome:C_jacchus3.2.1:22:1:49145316:1	17947881	17948257	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049587}  [Source:UniProtKB/TrEMBL;Acc:F6UTB3]
ENSCJAG00000012866	KNOWN	protein_coding	WNT7B	chromosome:C_jacchus3.2.1:1:1:210400635:1	205666629	205709284	R	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F7I1I5]
ENSCJAG00000019747	KNOWN_BY_PROJECTION	protein_coding	ARMC6	chromosome:C_jacchus3.2.1:22:1:49145316:1	17992728	18017529	D	armadillo repeat containing 6 [Source:HGNC Symbol;Acc:HGNC:25049]
ENSCJAG00000009031	KNOWN	protein_coding	EFNA1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9127785	9136624	D	Ephrin-A1 isoform b {ECO:0000313|EMBL:JAB51362.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016555}  [Source:UniProtKB/TrEMBL;Acc:F7B5R2]
ENSCJAG00000000168	NOVEL	pseudogene	ENSCJAG00000000168	chromosome:C_jacchus3.2.1:1:1:210400635:1	205730061	205730620	D	<no descrition>
ENSCJAG00000000169	KNOWN_BY_PROJECTION	protein_coding	PRR34	chromosome:C_jacchus3.2.1:1:1:210400635:1	205778596	205780787	R	proline rich 34 [Source:HGNC Symbol;Acc:HGNC:25606]
ENSCJAG00000019758	KNOWN	protein_coding	SLC25A42	chromosome:C_jacchus3.2.1:22:1:49145316:1	18022134	18062896	D	Mitochondrial coenzyme A transporter SLC25A42 {ECO:0000313|EMBL:JAB07444.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036732}  [Source:UniProtKB/TrEMBL;Acc:F6R5T4]
ENSCJAG00000000172	NOVEL	protein_coding	ENSCJAG00000000172	chromosome:C_jacchus3.2.1:1:1:210400635:1	205782373	205784798	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000277}  [Source:UniProtKB/TrEMBL;Acc:F7GES4]
ENSCJAG00000014381	NOVEL	pseudogene	ENSCJAG00000014381	chromosome:C_jacchus3.2.1:5:1:159171411:1	124688059	124689936	D	<no descrition>
ENSCJAG00000000176	KNOWN	protein_coding	PPARA	chromosome:C_jacchus3.2.1:1:1:210400635:1	205879485	205976695	D	Peroxisome proliferator-activated receptor alpha {ECO:0000313|EMBL:JAB09018.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000288}  [Source:UniProtKB/TrEMBL;Acc:F7G2H9]
ENSCJAG00000019759	KNOWN_BY_PROJECTION	protein_coding	TMEM161A	chromosome:C_jacchus3.2.1:22:1:49145316:1	18071135	18085229	R	transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
ENSCJAG00000000179	KNOWN	protein_coding	CDPF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	205986812	205989993	R	Cysteine-rich DPF motif domain-containing protein 1 {ECO:0000313|EMBL:JAB05989.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000290}  [Source:UniProtKB/TrEMBL;Acc:F7G256]
ENSCJAG00000014433	NOVEL	protein_coding	ENSCJAG00000014433	chromosome:C_jacchus3.2.1:2:1:204313951:1	73954601	74247360	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026794}  [Source:UniProtKB/TrEMBL;Acc:F7IDT2]
ENSCJAG00000014303	KNOWN_BY_PROJECTION	protein_coding	CASKIN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	124723217	124740392	R	CASK interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:18200]
ENSCJAG00000000181	KNOWN_BY_PROJECTION	protein_coding	PKDREJ	chromosome:C_jacchus3.2.1:1:1:210400635:1	205999284	206007395	R	polycystin (PKD) family receptor for egg jelly [Source:HGNC Symbol;Acc:HGNC:9015]
ENSCJAG00000000186	KNOWN_BY_PROJECTION	protein_coding	TTC38	chromosome:C_jacchus3.2.1:1:1:210400635:1	206015850	206046543	D	tetratricopeptide repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:26082]
ENSCJAG00000007050	KNOWN_BY_PROJECTION	protein_coding	TXNDC16	chromosome:C_jacchus3.2.1:10:1:132174527:1	76978027	77108664	R	thioredoxin domain containing 16 [Source:HGNC Symbol;Acc:HGNC:19965]
ENSCJAG00000000192	NOVEL	protein_coding	ENSCJAG00000000192	chromosome:C_jacchus3.2.1:1:1:210400635:1	206048813	206049364	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000314}  [Source:UniProtKB/TrEMBL;Acc:F7D8R3]
ENSCJAG00000002324	KNOWN	protein_coding	ANGPTL7	chromosome:C_jacchus3.2.1:7:1:155834243:1	45780750	45787726	D	Angiopoietin-related protein 7 {ECO:0000313|EMBL:JAB02609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004191}  [Source:UniProtKB/TrEMBL;Acc:F7A7Y3]
ENSCJAG00000009027	KNOWN	protein_coding	SLC50A1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9137935	9140376	D	Sugar transporter SWEET {ECO:0000256|RuleBase:RU910715}  [Source:UniProtKB/TrEMBL;Acc:F7BPX2]
ENSCJAG00000009024	NOVEL	protein_coding	ENSCJAG00000009024	chromosome:C_jacchus3.2.1:18:1:47448759:1	9141058	9141693	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016525}  [Source:UniProtKB/TrEMBL;Acc:F7C4N1]
ENSCJAG00000000195	KNOWN	protein_coding	GTSE1	chromosome:C_jacchus3.2.1:1:1:210400635:1	206049913	206085586	D	G2 and S phase-expressed protein 1 {ECO:0000313|EMBL:JAB42011.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051096}  [Source:UniProtKB/TrEMBL;Acc:F7C352]
ENSCJAG00000009017	KNOWN_BY_PROJECTION	protein_coding	KRTCAP2	chromosome:C_jacchus3.2.1:18:1:47448759:1	9169526	9173811	R	keratinocyte associated protein 2 [Source:HGNC Symbol;Acc:HGNC:28942]
ENSCJAG00000007087	KNOWN_BY_PROJECTION	protein_coding	GPR137C	chromosome:C_jacchus3.2.1:10:1:132174527:1	77118607	77202190	D	G protein-coupled receptor 137C [Source:HGNC Symbol;Acc:HGNC:25445]
ENSCJAG00000002187	KNOWN	protein_coding	UBIAD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	45891822	45905258	D	UbiA prenyltransferase domain-containing protein 1 {ECO:0000313|EMBL:JAB09280.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003924}  [Source:UniProtKB/TrEMBL;Acc:F7EK38]
ENSCJAG00000009004	NOVEL	protein_coding	ENSCJAG00000009004	chromosome:C_jacchus3.2.1:X:1:142054208:1	123357173	123550292	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016480}  [Source:UniProtKB/TrEMBL;Acc:F6VNG1]
ENSCJAG00000002175	KNOWN	protein_coding	PTCHD2	chromosome:C_jacchus3.2.1:7:1:155834243:1	46121333	46245914	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003916}  [Source:UniProtKB/TrEMBL;Acc:F7EK63]
ENSCJAG00000000840	KNOWN	protein_coding	TGFB1I1	chromosome:C_jacchus3.2.1:22:1:49145316:1	18073433	18247174	D	Transforming growth factor beta-1-induced transcript 1 protein isoform 1 {ECO:0000313|EMBL:JAB08320.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001463}  [Source:UniProtKB/TrEMBL;Acc:F6WK60]
ENSCJAG00000008969	KNOWN_BY_PROJECTION	protein_coding	TRIM46	chromosome:C_jacchus3.2.1:18:1:47448759:1	9173874	9185079	D	tripartite motif containing 46 [Source:HGNC Symbol;Acc:HGNC:19019]
ENSCJAG00000017550	NOVEL	protein_coding	ENSCJAG00000017550	chromosome:C_jacchus3.2.1:X:1:142054208:1	123509580	123536700	R	<no descrition>
ENSCJAG00000004135	NOVEL	protein_coding	ENSCJAG00000004135	chromosome:C_jacchus3.2.1:X:1:142054208:1	123592691	123597427	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007517}  [Source:UniProtKB/TrEMBL;Acc:F6S5F9]
ENSCJAG00000004131	NOVEL	protein_coding	ENSCJAG00000004131	chromosome:C_jacchus3.2.1:X:1:142054208:1	123641619	123642227	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007498}  [Source:UniProtKB/TrEMBL;Acc:F6ST17]
ENSCJAG00000014278	KNOWN_BY_PROJECTION	protein_coding	TSEN54	chromosome:C_jacchus3.2.1:5:1:159171411:1	124740557	124751513	D	TSEN54 tRNA splicing endonuclease subunit [Source:HGNC Symbol;Acc:HGNC:27561]
ENSCJAG00000007097	KNOWN_BY_PROJECTION	protein_coding	ERO1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	77205531	77263979	R	ERO1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:13280]
ENSCJAG00000000198	KNOWN	protein_coding	TRMU	chromosome:C_jacchus3.2.1:1:1:210400635:1	206086292	206105731	D	Mitochondrial tRNA-specific 2-thiouridylase 1 {ECO:0000313|EMBL:JAB24085.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000329}  [Source:UniProtKB/TrEMBL;Acc:F7D8I5]
ENSCJAG00000004043	KNOWN_BY_PROJECTION	protein_coding	SLC9A6	chromosome:C_jacchus3.2.1:X:1:142054208:1	123664040	123718251	D	solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 [Source:HGNC Symbol;Acc:HGNC:11079]
ENSCJAG00000007126	KNOWN	protein_coding	PSMC6	chromosome:C_jacchus3.2.1:10:1:132174527:1	77280185	77303259	D	26S protease regulatory subunit 10B {ECO:0000313|EMBL:JAB02849.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013278}  [Source:UniProtKB/TrEMBL;Acc:F6X828]
ENSCJAG00000013230	KNOWN	protein_coding	FBXO2	chromosome:C_jacchus3.2.1:7:1:155834243:1	46362341	46369975	R	F-box only protein 2 {ECO:0000313|EMBL:JAB11417.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024314}  [Source:UniProtKB/TrEMBL;Acc:F7HIY0]
ENSCJAG00000008923	KNOWN_BY_PROJECTION	protein_coding	MUC1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9186691	9191327	R	mucin 1, cell surface associated [Source:HGNC Symbol;Acc:HGNC:7508]
ENSCJAG00000019767	KNOWN	protein_coding	MEF2BNB	chromosome:C_jacchus3.2.1:22:1:49145316:1	18103631	18153210	R	Callithrix jacchus myocyte enhancer factor 2B (MEF2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001205200]
ENSCJAG00000013250	KNOWN_BY_PROJECTION	protein_coding	FBXO6	chromosome:C_jacchus3.2.1:7:1:155834243:1	46383725	46389075	D	F-box protein 6 [Source:HGNC Symbol;Acc:HGNC:13585]
ENSCJAG00000013267	KNOWN	protein_coding	MAD2L2	chromosome:C_jacchus3.2.1:7:1:155834243:1	46389363	46408105	R	Mitotic spindle assembly checkpoint protein MAD2B {ECO:0000313|EMBL:JAB04136.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047587}  [Source:UniProtKB/TrEMBL;Acc:F7DNN5]
ENSCJAG00000013304	KNOWN_BY_PROJECTION	protein_coding	DRAXIN	chromosome:C_jacchus3.2.1:7:1:155834243:1	46425636	46443421	D	dorsal inhibitory axon guidance protein [Source:HGNC Symbol;Acc:HGNC:25054]
ENSCJAG00000004699	KNOWN_BY_PROJECTION	protein_coding	PINX1	chromosome:C_jacchus3.2.1:4:1:171630274:1	112074292	112075583	R	PIN2/TERF1 interacting, telomerase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:30046]
ENSCJAG00000004696	NOVEL	pseudogene	ENSCJAG00000004696	chromosome:C_jacchus3.2.1:4:1:171630274:1	112105325	112106270	D	<no descrition>
ENSCJAG00000004694	NOVEL	pseudogene	ENSCJAG00000004694	chromosome:C_jacchus3.2.1:4:1:171630274:1	112116740	112117685	D	<no descrition>
ENSCJAG00000007152	KNOWN	protein_coding	STYX	chromosome:C_jacchus3.2.1:10:1:132174527:1	77307129	77462088	D	Serine/threonine/tyrosine-interacting protein {ECO:0000313|EMBL:JAB04052.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013287}  [Source:UniProtKB/TrEMBL;Acc:F6WLQ5]
ENSCJAG00000013319	KNOWN	protein_coding	AGTRAP	chromosome:C_jacchus3.2.1:7:1:155834243:1	46465169	46486488	D	Type-1 angiotensin II receptor-associated protein isoform a {ECO:0000313|EMBL:JAB05769.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024470}  [Source:UniProtKB/TrEMBL;Acc:F7DP64]
ENSCJAG00000003818	KNOWN_BY_PROJECTION	protein_coding	COL1A1	chromosome:C_jacchus3.2.1:X:1:142054208:1	123738785	123757384	D	collagen, type I, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2197]
ENSCJAG00000013328	KNOWN_BY_PROJECTION	protein_coding	C1orf167	chromosome:C_jacchus3.2.1:7:1:155834243:1	46503694	46506320	D	chromosome 1 open reading frame 167 [Source:HGNC Symbol;Acc:HGNC:25262]
ENSCJAG00000004687	KNOWN	protein_coding	MARCKS	chromosome:C_jacchus3.2.1:4:1:171630274:1	113671772	113677883	D	Myristoylated alanine-rich C-kinase substrate {ECO:0000313|EMBL:JAB10862.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008503}  [Source:UniProtKB/TrEMBL;Acc:F7HYZ1]
ENSCJAG00000013334	KNOWN	protein_coding	MTHFR	chromosome:C_jacchus3.2.1:7:1:155834243:1	46526404	46541614	R	Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}  [Source:UniProtKB/TrEMBL;Acc:F7H2X2]
ENSCJAG00000004635	KNOWN	protein_coding	HDAC2	chromosome:C_jacchus3.2.1:4:1:171630274:1	113770908	113973408	R	Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}  [Source:UniProtKB/TrEMBL;Acc:F7ICZ6]
ENSCJAG00000037028	KNOWN	protein_coding	MEF2BNB	chromosome:C_jacchus3.2.1:22:1:49145316:1	18136992	18165877	R	Protein MEF2BNB isoform 1 {ECO:0000313|EMBL:JAB02070.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036759}  [Source:UniProtKB/TrEMBL;Acc:F6QVS1]
ENSCJAG00000000201	NOVEL	protein_coding	ENSCJAG00000000201	chromosome:C_jacchus3.2.1:1:1:210400635:1	206113333	206114734	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000332}  [Source:UniProtKB/TrEMBL;Acc:F7D895]
ENSCJAG00000014252	KNOWN_BY_PROJECTION	protein_coding	LLGL2	chromosome:C_jacchus3.2.1:5:1:159171411:1	124784566	124804644	D	lethal giant larvae homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:6629]
ENSCJAG00000007854	NOVEL	protein_coding	ENSCJAG00000007854	chromosome:C_jacchus3.2.1:1:1:210400635:1	206128045	206133697	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014547}  [Source:UniProtKB/TrEMBL;Acc:F7IIR2]
ENSCJAG00000007154	KNOWN	protein_coding	GNPNAT1	chromosome:C_jacchus3.2.1:10:1:132174527:1	77343348	77358266	R	Glucosamine 6-phosphate N-acetyltransferase {ECO:0000313|EMBL:JAB09623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013318}  [Source:UniProtKB/TrEMBL;Acc:F7CEE3]
ENSCJAG00000019775	KNOWN	protein_coding	RFXANK	chromosome:C_jacchus3.2.1:22:1:49145316:1	18166222	18175950	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036778}  [Source:UniProtKB/TrEMBL;Acc:F6QJL5]
ENSCJAG00000014411	KNOWN	protein_coding	CDC42SE2	chromosome:C_jacchus3.2.1:2:1:204313951:1	74232769	74327848	R	CDC42 small effector protein 2 {ECO:0000313|EMBL:JAB09328.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026528}  [Source:UniProtKB/TrEMBL;Acc:F7IIP9]
ENSCJAG00000014404	KNOWN	protein_coding	LYRM7	chromosome:C_jacchus3.2.1:2:1:204313951:1	74413725	74449205	R	LYR motif-containing protein 7 {ECO:0000313|EMBL:JAB01716.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026495}  [Source:UniProtKB/TrEMBL;Acc:F7IQS0]
ENSCJAG00000014398	KNOWN	protein_coding	ENSCJAG00000014398	chromosome:C_jacchus3.2.1:2:1:204313951:1	74454506	74464244	D	Histidine triad nucleotide-binding protein 1 {ECO:0000313|EMBL:JAB48099.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026477}  [Source:UniProtKB/TrEMBL;Acc:F7IT51]
ENSCJAG00000014393	NOVEL	pseudogene	ENSCJAG00000014393	chromosome:C_jacchus3.2.1:2:1:204313951:1	74589091	74589693	R	<no descrition>
ENSCJAG00000014390	NOVEL	pseudogene	ENSCJAG00000014390	chromosome:C_jacchus3.2.1:2:1:204313951:1	74590507	74591058	R	<no descrition>
ENSCJAG00000019330	KNOWN_BY_PROJECTION	protein_coding	CHSY3	chromosome:C_jacchus3.2.1:2:1:204313951:1	75552788	75883567	R	chondroitin sulfate synthase 3 [Source:HGNC Symbol;Acc:HGNC:24293]
ENSCJAG00000007170	KNOWN	protein_coding	FERMT2	chromosome:C_jacchus3.2.1:10:1:132174527:1	77422158	77516636	R	Fermitin family homolog 2 isoform 1 {ECO:0000313|EMBL:JAB10096.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013418}  [Source:UniProtKB/TrEMBL;Acc:F6X6L1]
ENSCJAG00000014002	KNOWN_BY_PROJECTION	protein_coding	UNC13D	chromosome:C_jacchus3.2.1:5:1:159171411:1	124802235	125098410	R	unc-13 homolog D (C. elegans) [Source:HGNC Symbol;Acc:HGNC:23147]
ENSCJAG00000013347	KNOWN	protein_coding	CLCN6	chromosome:C_jacchus3.2.1:7:1:155834243:1	46541800	46579702	D	Chloride transport protein 6 isoform 1 {ECO:0000313|EMBL:JAB10826.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051335}  [Source:UniProtKB/TrEMBL;Acc:F6YJI7]
ENSCJAG00000019311	KNOWN_BY_PROJECTION	protein_coding	ADAMTS19	chromosome:C_jacchus3.2.1:2:1:204313951:1	75879359	76337907	R	ADAM metallopeptidase with thrombospondin type 1 motif, 19 [Source:HGNC Symbol;Acc:HGNC:17111]
ENSCJAG00000019782	KNOWN	protein_coding	NR2C2AP	chromosome:C_jacchus3.2.1:22:1:49145316:1	18175505	18177493	R	Nuclear receptor 2C2-associated protein {ECO:0000313|EMBL:JAB07519.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036782}  [Source:UniProtKB/TrEMBL;Acc:F6QJ75]
ENSCJAG00000019327	KNOWN_BY_PROJECTION	protein_coding	KIAA1024L	chromosome:C_jacchus3.2.1:2:1:204313951:1	76016726	76038519	R	KIAA1024-like [Source:HGNC Symbol;Acc:HGNC:33914]
ENSCJAG00000032511	NOVEL	protein_coding	ENSCJAG00000032511	chromosome:C_jacchus3.2.1:22:1:49145316:1	18188107	18194436	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005874}  [Source:UniProtKB/TrEMBL;Acc:F7HKQ1]
ENSCJAG00000019309	KNOWN	protein_coding	ISOC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	76786335	76802959	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035843}  [Source:UniProtKB/TrEMBL;Acc:F7H7G8]
ENSCJAG00000000876	KNOWN_BY_PROJECTION	protein_coding	COX6A2	chromosome:C_jacchus3.2.1:22:1:49145316:1	18197735	18198389	R	cytochrome c oxidase subunit VIa polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2279]
ENSCJAG00000031742	NOVEL	pseudogene	ENSCJAG00000031742	chromosome:C_jacchus3.2.1:22:1:49145316:1	18205872	18206195	R	<no descrition>
ENSCJAG00000019300	KNOWN_BY_PROJECTION	protein_coding	SLC27A6	chromosome:C_jacchus3.2.1:2:1:204313951:1	76907125	76970119	R	solute carrier family 27 (fatty acid transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11000]
ENSCJAG00000000862	KNOWN	protein_coding	ARMC5	chromosome:C_jacchus3.2.1:22:1:49145316:1	18223625	18235913	D	Armadillo repeat-containing protein 5 isoform a {ECO:0000313|EMBL:JAB04010.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001468}  [Source:UniProtKB/TrEMBL;Acc:F6WK11]
ENSCJAG00000014244	NOVEL	protein_coding	ENSCJAG00000014244	chromosome:C_jacchus3.2.1:5:1:159171411:1	124826600	124857246	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026198}  [Source:UniProtKB/TrEMBL;Acc:F7I2E6]
ENSCJAG00000004625	KNOWN_BY_PROJECTION	protein_coding	HS3ST5	chromosome:C_jacchus3.2.1:4:1:171630274:1	113873021	114203462	R	heparan sulfate (glucosamine) 3-O-sulfotransferase 5 [Source:HGNC Symbol;Acc:HGNC:19419]
ENSCJAG00000004617	NOVEL	protein_coding	ENSCJAG00000004617	chromosome:C_jacchus3.2.1:4:1:171630274:1	114209439	114211487	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008366}  [Source:UniProtKB/TrEMBL;Acc:F7HN12]
ENSCJAG00000002207	KNOWN_BY_PROJECTION	protein_coding	GRAMD4	chromosome:C_jacchus3.2.1:1:1:210400635:1	206343981	206387697	R	GRAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:29113]
ENSCJAG00000014224	NOVEL	protein_coding	ENSCJAG00000014224	chromosome:C_jacchus3.2.1:5:1:159171411:1	124857637	124862878	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026187}  [Source:UniProtKB/TrEMBL;Acc:F7I4R0]
ENSCJAG00000004595	KNOWN	protein_coding	FRK	chromosome:C_jacchus3.2.1:4:1:171630274:1	115831828	115943761	R	Tyrosine-protein kinase FRK {ECO:0000313|EMBL:JAB07511.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008357}  [Source:UniProtKB/TrEMBL;Acc:F7HTM9]
ENSCJAG00000019242	KNOWN_BY_PROJECTION	protein_coding	FBN2	chromosome:C_jacchus3.2.1:2:1:204313951:1	77435626	77708794	D	fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
ENSCJAG00000002185	KNOWN_BY_PROJECTION	protein_coding	TBC1D22A	chromosome:C_jacchus3.2.1:1:1:210400635:1	206377580	206962925	D	TBC1 domain family, member 22A [Source:HGNC Symbol;Acc:HGNC:1309]
ENSCJAG00000002195	KNOWN_BY_PROJECTION	protein_coding	CERK	chromosome:C_jacchus3.2.1:1:1:210400635:1	206451116	206515628	R	ceramide kinase [Source:HGNC Symbol;Acc:HGNC:19256]
ENSCJAG00000000834	KNOWN_BY_PROJECTION	protein_coding	SLC5A2	chromosome:C_jacchus3.2.1:22:1:49145316:1	18254470	18261941	D	solute carrier family 5 (sodium/glucose cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11037]
ENSCJAG00000002081	NOVEL	protein_coding	ENSCJAG00000002081	chromosome:C_jacchus3.2.1:1:1:210400635:1	207131942	207134193	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052215}  [Source:UniProtKB/TrEMBL;Acc:F7ILI4]
ENSCJAG00000014183	KNOWN_BY_PROJECTION	protein_coding	RECQL5	chromosome:C_jacchus3.2.1:5:1:159171411:1	124862943	124905123	R	RecQ protein-like 5 [Source:HGNC Symbol;Acc:HGNC:9950]
ENSCJAG00000002079	NOVEL	protein_coding	ENSCJAG00000002079	chromosome:C_jacchus3.2.1:1:1:210400635:1	207166400	207168236	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003748}  [Source:UniProtKB/TrEMBL;Acc:F7EKV6]
ENSCJAG00000018966	NOVEL	pseudogene	ENSCJAG00000018966	chromosome:C_jacchus3.2.1:1:1:210400635:1	207790982	207791467	R	<no descrition>
ENSCJAG00000031350	NOVEL	pseudogene	ENSCJAG00000031350	chromosome:C_jacchus3.2.1:4:1:171630274:1	115923055	115924290	D	<no descrition>
ENSCJAG00000033110	KNOWN_BY_PROJECTION	protein_coding	FAM19A5	chromosome:C_jacchus3.2.1:1:1:210400635:1	208244337	208481946	D	family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 [Source:HGNC Symbol;Acc:HGNC:21592]
ENSCJAG00000009853	NOVEL	protein_coding	ENSCJAG00000009853	chromosome:C_jacchus3.2.1:1:1:210400635:1	208291961	208294211	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018064}  [Source:UniProtKB/TrEMBL;Acc:F7GA37]
ENSCJAG00000035179	NOVEL	pseudogene	ENSCJAG00000035179	chromosome:C_jacchus3.2.1:1:1:210400635:1	208921532	208921917	D	<no descrition>
ENSCJAG00000031519	NOVEL	protein_coding	ENSCJAG00000031519	chromosome:C_jacchus3.2.1:1:1:210400635:1	209259951	209263903	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045408}  [Source:UniProtKB/TrEMBL;Acc:F6RLB8]
ENSCJAG00000003794	KNOWN_BY_PROJECTION	protein_coding	SGCA	chromosome:C_jacchus3.2.1:X:1:142054208:1	123765117	123776702	R	sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:HGNC:10805]
ENSCJAG00000000816	KNOWN	protein_coding	C16ORF58	chromosome:C_jacchus3.2.1:22:1:49145316:1	18260909	18279446	R	UPF0420 protein C16orf58 {ECO:0000313|EMBL:JAB08365.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001400}  [Source:UniProtKB/TrEMBL;Acc:F6XUM9]
ENSCJAG00000016639	KNOWN_BY_PROJECTION	protein_coding	BRD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	209330578	209374184	R	bromodomain containing 1 [Source:HGNC Symbol;Acc:HGNC:1102]
ENSCJAG00000003817	NOVEL	protein_coding	ENSCJAG00000003817	chromosome:C_jacchus3.2.1:X:1:142054208:1	123768825	123769685	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006917}  [Source:UniProtKB/TrEMBL;Acc:F7H5L1]
ENSCJAG00000034069	NOVEL	protein_coding	ENSCJAG00000034069	chromosome:C_jacchus3.2.1:10:1:132174527:1	77423507	77424725	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050444}  [Source:UniProtKB/TrEMBL;Acc:F7HE37]
ENSCJAG00000013443	KNOWN_BY_PROJECTION	protein_coding	NPPA	chromosome:C_jacchus3.2.1:7:1:155834243:1	46584204	46585661	R	natriuretic peptide A [Source:HGNC Symbol;Acc:HGNC:7939]
ENSCJAG00000013447	KNOWN_BY_PROJECTION	protein_coding	NPPB	chromosome:C_jacchus3.2.1:7:1:155834243:1	46596173	46596875	R	natriuretic peptide B [Source:HGNC Symbol;Acc:HGNC:7940]
ENSCJAG00000013453	KNOWN_BY_PROJECTION	protein_coding	KIAA2013	chromosome:C_jacchus3.2.1:7:1:155834243:1	46662731	46663746	R	KIAA2013 [Source:HGNC Symbol;Acc:HGNC:28513]
ENSCJAG00000007229	KNOWN	protein_coding	DDHD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	77644353	77757131	R	Phospholipase DDHD1 isoform a {ECO:0000313|EMBL:JAB28503.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013504}  [Source:UniProtKB/TrEMBL;Acc:F6ZYN5]
ENSCJAG00000013459	KNOWN_BY_PROJECTION	protein_coding	PLOD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	46678250	46720910	D	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:9081]
ENSCJAG00000008715	KNOWN_BY_PROJECTION	protein_coding	THBS3	chromosome:C_jacchus3.2.1:18:1:47448759:1	9193878	9206953	R	thrombospondin 3 [Source:HGNC Symbol;Acc:HGNC:11787]
ENSCJAG00000004553	KNOWN	protein_coding	NT5DC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	115981487	116124164	D	5'-nucleotidase domain-containing protein 1 {ECO:0000313|EMBL:JAB02399.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008311}  [Source:UniProtKB/TrEMBL;Acc:F7HZ13]
ENSCJAG00000003771	KNOWN	protein_coding	FHL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	123871765	123941369	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049411}  [Source:UniProtKB/TrEMBL;Acc:F6UUC1]
ENSCJAG00000000832	NOVEL	pseudogene	ENSCJAG00000000832	chromosome:C_jacchus3.2.1:22:1:49145316:1	18266265	18267709	R	<no descrition>
ENSCJAG00000000814	KNOWN	protein_coding	AHSP	chromosome:C_jacchus3.2.1:22:1:49145316:1	18293020	18293941	D	Alpha-hemoglobin-stabilizing protein {ECO:0000313|EMBL:JAB12184.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001387}  [Source:UniProtKB/TrEMBL;Acc:F7B0H6]
ENSCJAG00000000807	NOVEL	protein_coding	ENSCJAG00000000807	chromosome:C_jacchus3.2.1:22:1:49145316:1	18324946	18349485	R	<no descrition>
ENSCJAG00000000798	KNOWN_BY_PROJECTION	protein_coding	ZNF267	chromosome:C_jacchus3.2.1:22:1:49145316:1	18531024	18590955	D	zinc finger protein 267 [Source:HGNC Symbol;Acc:HGNC:13060]
ENSCJAG00000032500	NOVEL	pseudogene	ENSCJAG00000032500	chromosome:C_jacchus3.2.1:10:1:132174527:1	77783754	77784379	R	<no descrition>
ENSCJAG00000007269	NOVEL	protein_coding	ENSCJAG00000007269	chromosome:C_jacchus3.2.1:10:1:132174527:1	77981050	77982080	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013533}  [Source:UniProtKB/TrEMBL;Acc:F6ZFZ2]
ENSCJAG00000000788	KNOWN	protein_coding	ZNF248	chromosome:C_jacchus3.2.1:22:1:49145316:1	18691099	18776739	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001355}; Zinc finger protein 248 isoform 1 {ECO:0000313|EMBL:JAB18761.1}  [Source:UniProtKB/TrEMBL;Acc:F7BZY5]
ENSCJAG00000007270	NOVEL	protein_coding	BMP4	chromosome:C_jacchus3.2.1:10:1:132174527:1	78552467	78559554	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009867}  [Source:UniProtKB/TrEMBL;Acc:F7F6N2]
ENSCJAG00000034553	NOVEL	protein_coding	ENSCJAG00000034553	chromosome:C_jacchus3.2.1:10:1:132174527:1	78880984	78882728	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041984}  [Source:UniProtKB/TrEMBL;Acc:F7G4J7]
ENSCJAG00000000787	NOVEL	pseudogene	ENSCJAG00000000787	chromosome:C_jacchus3.2.1:22:1:49145316:1	18838343	18838688	R	<no descrition>
ENSCJAG00000003322	KNOWN_BY_PROJECTION	protein_coding	MAPK12	chromosome:C_jacchus3.2.1:1:1:210400635:1	209334042	209801440	R	mitogen-activated protein kinase 12 [Source:HGNC Symbol;Acc:HGNC:6874]
ENSCJAG00000014222	KNOWN	protein_coding	ENSCJAG00000014222	chromosome:C_jacchus3.2.1:5:1:159171411:1	124869150	124877283	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043139}; Uncharacterized protein C17orf109 {ECO:0000313|EMBL:JAB02026.1}  [Source:UniProtKB/TrEMBL;Acc:F7IM97]
ENSCJAG00000031490	KNOWN_BY_PROJECTION	protein_coding	SMIM6	chromosome:C_jacchus3.2.1:5:1:159171411:1	124882687	124884070	D	small integral membrane protein 6 [Source:HGNC Symbol;Acc:HGNC:40032]
ENSCJAG00000014157	KNOWN_BY_PROJECTION	protein_coding	SAP30BP	chromosome:C_jacchus3.2.1:5:1:159171411:1	124905297	124949209	D	SAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]
ENSCJAG00000019224	KNOWN	protein_coding	SLC12A2	chromosome:C_jacchus3.2.1:2:1:204313951:1	77782589	77888156	R	Solute carrier family 12 member 2 isoform 2 {ECO:0000313|EMBL:JAB18955.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003320}  [Source:UniProtKB/TrEMBL;Acc:F7EMU8]
ENSCJAG00000007280	KNOWN_BY_PROJECTION	protein_coding	CDKN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	78983526	79196750	D	cyclin-dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]
ENSCJAG00000003766	KNOWN_BY_PROJECTION	protein_coding	MAP7D3	chromosome:C_jacchus3.2.1:X:1:142054208:1	123947292	123979273	R	MAP7 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:25742]
ENSCJAG00000013494	KNOWN_BY_PROJECTION	protein_coding	MFN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	46725672	46756123	D	mitofusin 2 [Source:HGNC Symbol;Acc:HGNC:16877]
ENSCJAG00000022279	KNOWN_BY_PROJECTION	protein_coding	CTXN3	chromosome:C_jacchus3.2.1:2:1:204313951:1	78321639	78327027	R	cortexin 3 [Source:HGNC Symbol;Acc:HGNC:31110]
ENSCJAG00000000783	KNOWN	protein_coding	ZNF25	chromosome:C_jacchus3.2.1:22:1:49145316:1	18846356	18874662	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048165}; Zinc finger protein 25 {ECO:0000313|EMBL:JAB01776.1}  [Source:UniProtKB/TrEMBL;Acc:F7H3J2]
ENSCJAG00000019201	KNOWN	protein_coding	PRRC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	78412951	78454537	R	Protein PRRC1 {ECO:0000313|EMBL:JAB13957.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035679}  [Source:UniProtKB/TrEMBL;Acc:F7GSG9]
ENSCJAG00000000768	KNOWN_BY_PROJECTION	protein_coding	ZNF658	chromosome:C_jacchus3.2.1:22:1:49145316:1	18896915	18996948	D	zinc finger protein 658 [Source:HGNC Symbol;Acc:HGNC:25226]
ENSCJAG00000016676	NOVEL	pseudogene	ENSCJAG00000016676	chromosome:C_jacchus3.2.1:1:1:210400635:1	209432916	209437989	D	<no descrition>
ENSCJAG00000000767	NOVEL	protein_coding	ENSCJAG00000000767	chromosome:C_jacchus3.2.1:22:1:49145316:1	19104710	19106044	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001299}  [Source:UniProtKB/TrEMBL;Acc:F6X8I0]
ENSCJAG00000000765	NOVEL	pseudogene	ENSCJAG00000000765	chromosome:C_jacchus3.2.1:22:1:49145316:1	19189862	19190781	D	<no descrition>
ENSCJAG00000016677	KNOWN_BY_PROJECTION	protein_coding	ALG12	chromosome:C_jacchus3.2.1:1:1:210400635:1	209450263	209460651	R	ALG12, alpha-1,6-mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:19358]
ENSCJAG00000031151	NOVEL	protein_coding	ENSCJAG00000031151	chromosome:C_jacchus3.2.1:22:1:49145316:1	19264762	19265458	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049633}  [Source:UniProtKB/TrEMBL;Acc:F6ZWS8]
ENSCJAG00000003732	KNOWN_BY_PROJECTION	protein_coding	GPR112	chromosome:C_jacchus3.2.1:X:1:142054208:1	124031289	124146412	D	G protein-coupled receptor 112 [Source:HGNC Symbol;Acc:HGNC:18992]
ENSCJAG00000033893	NOVEL	protein_coding	ENSCJAG00000033893	chromosome:C_jacchus3.2.1:22:1:49145316:1	19336642	19342428	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006781}  [Source:UniProtKB/TrEMBL;Acc:F7EBM9]
ENSCJAG00000019199	NOVEL	protein_coding	ENSCJAG00000019199	chromosome:C_jacchus3.2.1:2:1:204313951:1	78458613	78459835	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035636}  [Source:UniProtKB/TrEMBL;Acc:F7H7X1]
ENSCJAG00000016693	KNOWN_BY_PROJECTION	protein_coding	CRELD2	chromosome:C_jacchus3.2.1:1:1:210400635:1	209466643	209476668	D	cysteine-rich with EGF-like domains 2 [Source:HGNC Symbol;Acc:HGNC:28150]
ENSCJAG00000036294	KNOWN_BY_PROJECTION	protein_coding	ZNF430	chromosome:C_jacchus3.2.1:22:1:49145316:1	19346790	19559885	D	zinc finger protein 430 [Source:HGNC Symbol;Acc:HGNC:20808]
ENSCJAG00000038110	NOVEL	protein_coding	ENSCJAG00000038110	chromosome:C_jacchus3.2.1:22:1:49145316:1	19372946	19385837	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001292}  [Source:UniProtKB/TrEMBL;Acc:F6X8X7]
ENSCJAG00000013541	KNOWN_BY_PROJECTION	protein_coding	MIIP	chromosome:C_jacchus3.2.1:7:1:155834243:1	46764407	46775619	D	migration and invasion inhibitory protein [Source:HGNC Symbol;Acc:HGNC:25715]
ENSCJAG00000003399	KNOWN_BY_PROJECTION	protein_coding	MOV10L1	chromosome:C_jacchus3.2.1:1:1:210400635:1	209631829	209701745	D	Mov10 RISC complex RNA helicase like 1 [Source:HGNC Symbol;Acc:HGNC:7201]
ENSCJAG00000019171	KNOWN_BY_PROJECTION	protein_coding	MEGF10	chromosome:C_jacchus3.2.1:2:1:204313951:1	78502377	78730800	R	multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
ENSCJAG00000032315	KNOWN_BY_PROJECTION	protein_coding	ZNF91	chromosome:C_jacchus3.2.1:22:1:49145316:1	19443866	21478262	D	zinc finger protein 91 [Source:HGNC Symbol;Acc:HGNC:13166]
ENSCJAG00000013559	NOVEL	protein_coding	ENSCJAG00000013559	chromosome:C_jacchus3.2.1:7:1:155834243:1	46813323	46893791	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024947}  [Source:UniProtKB/TrEMBL;Acc:F6R4I7]
ENSCJAG00000013571	KNOWN_BY_PROJECTION	protein_coding	TNFRSF1B	chromosome:C_jacchus3.2.1:7:1:155834243:1	46920202	46965067	D	tumor necrosis factor receptor superfamily, member 1B [Source:HGNC Symbol;Acc:HGNC:11917]
ENSCJAG00000003727	KNOWN_BY_PROJECTION	protein_coding	BRS3	chromosome:C_jacchus3.2.1:X:1:142054208:1	124230441	124234834	D	bombesin-like receptor 3 [Source:HGNC Symbol;Acc:HGNC:1113]
ENSCJAG00000004589	KNOWN_BY_PROJECTION	protein_coding	COL10A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	115999573	116006749	R	collagen, type X, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2185]
ENSCJAG00000004549	NOVEL	pseudogene	ENSCJAG00000004549	chromosome:C_jacchus3.2.1:4:1:171630274:1	116147802	116149088	R	<no descrition>
ENSCJAG00000004530	KNOWN_BY_PROJECTION	protein_coding	DSE	chromosome:C_jacchus3.2.1:4:1:171630274:1	116149383	116310990	D	dermatan sulfate epimerase [Source:HGNC Symbol;Acc:HGNC:21144]
ENSCJAG00000014116	KNOWN	protein_coding	ITGB4	chromosome:C_jacchus3.2.1:5:1:159171411:1	124961019	125000981	D	Integrin beta {ECO:0000256|RuleBase:RU000633}  [Source:UniProtKB/TrEMBL;Acc:F6VBZ2]
ENSCJAG00000003676	NOVEL	protein_coding	ENSCJAG00000003676	chromosome:C_jacchus3.2.1:X:1:142054208:1	124239413	124428524	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006679}  [Source:UniProtKB/TrEMBL;Acc:F7GVE3]
ENSCJAG00000004546	NOVEL	protein_coding	ENSCJAG00000004546	chromosome:C_jacchus3.2.1:4:1:171630274:1	116180461	116181497	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008228}  [Source:UniProtKB/TrEMBL;Acc:F7IFL9]
ENSCJAG00000004524	KNOWN_BY_PROJECTION	protein_coding	FAM26F	chromosome:C_jacchus3.2.1:4:1:171630274:1	116334221	116418309	D	family with sequence similarity 26, member F [Source:HGNC Symbol;Acc:HGNC:33391]
ENSCJAG00000004513	KNOWN_BY_PROJECTION	protein_coding	TRAPPC3L	chromosome:C_jacchus3.2.1:4:1:171630274:1	116367906	116407539	R	trafficking protein particle complex 3-like [Source:HGNC Symbol;Acc:HGNC:21090]
ENSCJAG00000003722	KNOWN_BY_PROJECTION	protein_coding	VGLL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	124274030	124299960	D	vestigial-like family member 1 [Source:HGNC Symbol;Acc:HGNC:20985]
ENSCJAG00000036187	NOVEL	protein_coding	ENSCJAG00000036187	chromosome:C_jacchus3.2.1:22:1:49145316:1	19632296	19736479	D	<no descrition>
ENSCJAG00000004521	KNOWN	protein_coding	FAM26E	chromosome:C_jacchus3.2.1:4:1:171630274:1	116377701	116382176	D	Protein FAM26E {ECO:0000313|EMBL:JAB10506.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008184}  [Source:UniProtKB/TrEMBL;Acc:F7IPZ5]
ENSCJAG00000019170	KNOWN	protein_coding	C5ORF63	chromosome:C_jacchus3.2.1:2:1:204313951:1	78886058	78907911	D	Glutaredoxin-like protein C5orf63 isoform 2 {ECO:0000313|EMBL:JAB05964.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035572}  [Source:UniProtKB/TrEMBL;Acc:F7E4F2]
ENSCJAG00000004499	KNOWN_BY_PROJECTION	protein_coding	FAM26D	chromosome:C_jacchus3.2.1:4:1:171630274:1	116389599	116426401	D	family with sequence similarity 26, member D [Source:HGNC Symbol;Acc:HGNC:21094]
ENSCJAG00000003696	KNOWN	protein_coding	CD40LG	chromosome:C_jacchus3.2.1:X:1:142054208:1	124396371	124408550	D	Callithrix jacchus CD40 ligand (CD40LG), mRNA. [Source:RefSeq mRNA;Acc:NM_001267755]
ENSCJAG00000013580	KNOWN_BY_PROJECTION	protein_coding	VPS13D	chromosome:C_jacchus3.2.1:7:1:155834243:1	46988929	47315505	D	vacuolar protein sorting 13 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:23595]
ENSCJAG00000013721	NOVEL	protein_coding	ENSCJAG00000013721	chromosome:C_jacchus3.2.1:22:1:49145316:1	19635733	19989141	R	<no descrition>
ENSCJAG00000019167	KNOWN	protein_coding	MARCH3	chromosome:C_jacchus3.2.1:2:1:204313951:1	78929021	79082903	D	E3 ubiquitin-protein ligase MARCH3 {ECO:0000313|EMBL:JAB03408.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035570}  [Source:UniProtKB/TrEMBL;Acc:F7E4G2]
ENSCJAG00000004510	NOVEL	protein_coding	ENSCJAG00000004510	chromosome:C_jacchus3.2.1:4:1:171630274:1	116409527	116410287	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7HQV8]
ENSCJAG00000019144	KNOWN	protein_coding	LMNB1	chromosome:C_jacchus3.2.1:2:1:204313951:1	79114457	79177261	R	Lamin-B1 isoform 1 {ECO:0000313|EMBL:JAB03585.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035553}  [Source:UniProtKB/TrEMBL;Acc:F7EH73]
ENSCJAG00000004474	NOVEL	protein_coding	ENSCJAG00000004474	chromosome:C_jacchus3.2.1:4:1:171630274:1	116430622	116454075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042972}  [Source:UniProtKB/TrEMBL;Acc:F6UFV6]
ENSCJAG00000000762	NOVEL	protein_coding	ENSCJAG00000000762	chromosome:C_jacchus3.2.1:22:1:49145316:1	20362809	20542612	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037252}  [Source:UniProtKB/TrEMBL;Acc:F6W1N6]
ENSCJAG00000007306	KNOWN	protein_coding	CNIH1	chromosome:C_jacchus3.2.1:10:1:132174527:1	79019774	79034516	R	Protein cornichon homolog {ECO:0000313|EMBL:JAB03112.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013610}  [Source:UniProtKB/TrEMBL;Acc:F7CT80]
ENSCJAG00000020025	NOVEL	protein_coding	ENSCJAG00000020025	chromosome:C_jacchus3.2.1:22:1:49145316:1	20489409	20490544	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052052}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ7]
ENSCJAG00000017763	KNOWN_BY_PROJECTION	protein_coding	ZNF257	chromosome:C_jacchus3.2.1:22:1:49145316:1	20504100	20511795	R	zinc finger protein 257 [Source:HGNC Symbol;Acc:HGNC:13498]
ENSCJAG00000003392	KNOWN_BY_PROJECTION	protein_coding	PANX2	chromosome:C_jacchus3.2.1:1:1:210400635:1	209711465	209720260	D	pannexin 2 [Source:HGNC Symbol;Acc:HGNC:8600]
ENSCJAG00000004455	KNOWN_BY_PROJECTION	protein_coding	RSPH4A	chromosome:C_jacchus3.2.1:4:1:171630274:1	116469367	116484966	D	radial spoke head 4 homolog A (Chlamydomonas) [Source:HGNC Symbol;Acc:HGNC:21558]
ENSCJAG00000003630	KNOWN	protein_coding	ARHGEF6	chromosome:C_jacchus3.2.1:X:1:142054208:1	124413319	124526598	R	Rho guanine nucleotide exchange factor 6 {ECO:0000313|EMBL:JAB16021.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025968}  [Source:UniProtKB/TrEMBL;Acc:F6UQP9]
ENSCJAG00000008683	KNOWN	protein_coding	ENSCJAG00000008683	chromosome:C_jacchus3.2.1:18:1:47448759:1	9207739	9213175	D	Metaxin-1 isoform 1 {ECO:0000313|EMBL:JAB07726.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016008}  [Source:UniProtKB/TrEMBL;Acc:F6Y7S9]
ENSCJAG00000034515	KNOWN_BY_PROJECTION	protein_coding	ZNF724P	chromosome:C_jacchus3.2.1:22:1:49145316:1	20727914	21562740	D	zinc finger protein 724, pseudogene [Source:HGNC Symbol;Acc:HGNC:32460]
ENSCJAG00000003384	KNOWN_BY_PROJECTION	protein_coding	TRABD	chromosome:C_jacchus3.2.1:1:1:210400635:1	209726799	209741419	D	TraB domain containing [Source:HGNC Symbol;Acc:HGNC:28805]
ENSCJAG00000008668	NOVEL	protein_coding	ENSCJAG00000008668	chromosome:C_jacchus3.2.1:18:1:47448759:1	9209895	9242584	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015945}  [Source:UniProtKB/TrEMBL;Acc:F7DSS5]
ENSCJAG00000007312	KNOWN_BY_PROJECTION	protein_coding	GMFB	chromosome:C_jacchus3.2.1:10:1:132174527:1	79082033	79087739	R	glia maturation factor, beta [Source:HGNC Symbol;Acc:HGNC:4373]
ENSCJAG00000032298	NOVEL	pseudogene	ENSCJAG00000032298	chromosome:C_jacchus3.2.1:4:1:171630274:1	116487508	116487778	R	<no descrition>
ENSCJAG00000004437	KNOWN	protein_coding	ZUFSP	chromosome:C_jacchus3.2.1:4:1:171630274:1	116489241	116521744	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008053}; Zinc finger with UFM1-specific peptidase domain protein {ECO:0000313|EMBL:JAB12398.1}  [Source:UniProtKB/TrEMBL;Acc:F6Z9J6]
ENSCJAG00000017780	NOVEL	pseudogene	ENSCJAG00000017780	chromosome:C_jacchus3.2.1:22:1:49145316:1	20766676	20768939	D	<no descrition>
ENSCJAG00000007328	KNOWN	protein_coding	CGRRF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	79112691	79140883	D	Cell growth regulator with RING finger domain protein 1 {ECO:0000313|EMBL:JAB01942.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013650}  [Source:UniProtKB/TrEMBL;Acc:F7BXZ7]
ENSCJAG00000003360	KNOWN	protein_coding	ENSCJAG00000003360	chromosome:C_jacchus3.2.1:1:1:210400635:1	209742680	209755739	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006132}  [Source:UniProtKB/TrEMBL;Acc:F7ESL8]
ENSCJAG00000000065	NOVEL	protein_coding	ENSCJAG00000000065	chromosome:C_jacchus3.2.1:22:1:49145316:1	20781824	20799606	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000116}  [Source:UniProtKB/TrEMBL;Acc:F7EY55]
ENSCJAG00000034495	NOVEL	pseudogene	ENSCJAG00000034495	chromosome:C_jacchus3.2.1:2:1:204313951:1	79185723	79186183	D	<no descrition>
ENSCJAG00000022596	NOVEL	protein_coding	ENSCJAG00000022596	chromosome:C_jacchus3.2.1:22:1:49145316:1	21033504	21038019	R	40S ribosomal protein SA {ECO:0000256|HAMAP-Rule:MF_03016}  [Source:UniProtKB/TrEMBL;Acc:F7DGX3]
ENSCJAG00000008613	KNOWN_BY_PROJECTION	protein_coding	GBA	chromosome:C_jacchus3.2.1:18:1:47448759:1	9213169	9270400	R	glucosidase, beta, acid [Source:HGNC Symbol;Acc:HGNC:4177]
ENSCJAG00000007500	NOVEL	pseudogene	ENSCJAG00000007500	chromosome:C_jacchus3.2.1:22:1:49145316:1	21301443	21301885	R	<no descrition>
ENSCJAG00000032471	NOVEL	protein_coding	ENSCJAG00000032471	chromosome:C_jacchus3.2.1:22:1:49145316:1	21331460	21333563	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009633}  [Source:UniProtKB/TrEMBL;Acc:F7FZL8]
ENSCJAG00000007515	NOVEL	pseudogene	ENSCJAG00000007515	chromosome:C_jacchus3.2.1:22:1:49145316:1	21462611	21463311	D	<no descrition>
ENSCJAG00000011071	KNOWN_BY_PROJECTION	protein_coding	TEX43	chromosome:C_jacchus3.2.1:2:1:204313951:1	79300952	79308555	R	testis expressed 43 [Source:HGNC Symbol;Acc:HGNC:33767]
ENSCJAG00000011077	KNOWN	protein_coding	PHAX	chromosome:C_jacchus3.2.1:2:1:204313951:1	79313263	79335329	R	Phosphorylated adapter RNA export protein {ECO:0000313|EMBL:JAB03473.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020465}  [Source:UniProtKB/TrEMBL;Acc:F7DJT3]
ENSCJAG00000018182	KNOWN_BY_PROJECTION	protein_coding	SAMD4A	chromosome:C_jacchus3.2.1:10:1:132174527:1	79171371	79395154	D	sterile alpha motif domain containing 4A [Source:HGNC Symbol;Acc:HGNC:23023]
ENSCJAG00000007298	NOVEL	protein_coding	ENSCJAG00000007298	chromosome:C_jacchus3.2.1:22:1:49145316:1	21746356	21762645	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013597}  [Source:UniProtKB/TrEMBL;Acc:F6WJH3]
ENSCJAG00000011102	NOVEL	protein_coding	ENSCJAG00000011102	chromosome:C_jacchus3.2.1:2:1:204313951:1	79340922	79399454	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045639}  [Source:UniProtKB/TrEMBL;Acc:F6QNR1]
ENSCJAG00000001888	NOVEL	pseudogene	ENSCJAG00000001888	chromosome:C_jacchus3.2.1:22:1:49145316:1	22859437	22860769	R	<no descrition>
ENSCJAG00000019135	KNOWN_BY_PROJECTION	protein_coding	LMF2	chromosome:C_jacchus3.2.1:1:1:210400635:1	209754686	210334472	R	lipase maturation factor 2 [Source:HGNC Symbol;Acc:HGNC:25096]
ENSCJAG00000001887	NOVEL	protein_coding	ISP	chromosome:C_jacchus3.2.1:22:1:49145316:1	23883808	23889436	R	Cytochrome b-c1 complex subunit Rieske, mitochondrial {ECO:0000256|RuleBase:RU004494}  [Source:UniProtKB/TrEMBL;Acc:F7ABQ4]
ENSCJAG00000001884	KNOWN	protein_coding	VSTM2B	chromosome:C_jacchus3.2.1:22:1:49145316:1	24160361	24195907	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003381}; V-set and transmembrane domain-containing protein 2B {ECO:0000313|EMBL:JAB16856.1}  [Source:UniProtKB/TrEMBL;Acc:F7DEG6]
ENSCJAG00000004394	KNOWN_BY_PROJECTION	protein_coding	KPNA5	chromosome:C_jacchus3.2.1:4:1:171630274:1	116533087	116607509	D	karyopherin alpha 5 (importin alpha 6) [Source:HGNC Symbol;Acc:HGNC:6398]
ENSCJAG00000008526	KNOWN	protein_coding	FAM189B	chromosome:C_jacchus3.2.1:18:1:47448759:1	9276086	9283883	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015851}  [Source:UniProtKB/TrEMBL;Acc:F7GNN9]
ENSCJAG00000013708	KNOWN	protein_coding	DHRS3	chromosome:C_jacchus3.2.1:7:1:155834243:1	47370740	47427882	R	Short-chain dehydrogenase/reductase 3 {ECO:0000313|EMBL:JAB12575.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025216}  [Source:UniProtKB/TrEMBL;Acc:F6YIJ7]
ENSCJAG00000001874	KNOWN	protein_coding	POP4	chromosome:C_jacchus3.2.1:22:1:49145316:1	24240356	24251404	D	Ribonuclease P protein subunit p29 {ECO:0000313|EMBL:JAB01654.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003374}  [Source:UniProtKB/TrEMBL;Acc:F7DV19]
ENSCJAG00000037382	NOVEL	pseudogene	ENSCJAG00000037382	chromosome:C_jacchus3.2.1:1:1:210400635:1	209755308	209755739	D	<no descrition>
ENSCJAG00000003351	KNOWN_BY_PROJECTION	protein_coding	TUBGCP6	chromosome:C_jacchus3.2.1:1:1:210400635:1	209755818	209783651	R	tubulin, gamma complex associated protein 6 [Source:HGNC Symbol;Acc:HGNC:18127]
ENSCJAG00000014102	KNOWN_BY_PROJECTION	protein_coding	GALK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	125001187	125006475	R	galactokinase 1 [Source:HGNC Symbol;Acc:HGNC:4118]
ENSCJAG00000001871	KNOWN	protein_coding	PLEKHF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	24281494	24290282	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003361}  [Source:UniProtKB/TrEMBL;Acc:F7DVQ2]
ENSCJAG00000001867	KNOWN_BY_PROJECTION	protein_coding	C19orf12	chromosome:C_jacchus3.2.1:22:1:49145316:1	24312540	24319144	R	chromosome 19 open reading frame 12 [Source:HGNC Symbol;Acc:HGNC:25443]
ENSCJAG00000001857	KNOWN	protein_coding	CCNE1	chromosome:C_jacchus3.2.1:22:1:49145316:1	24428243	24442104	D	G1/S-specific cyclin-E1 {ECO:0000313|EMBL:JAB26824.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003346}  [Source:UniProtKB/TrEMBL;Acc:F7EA63]
ENSCJAG00000008280	KNOWN_BY_PROJECTION	protein_coding	GRAMD3	chromosome:C_jacchus3.2.1:2:1:204313951:1	79430867	79571107	R	GRAM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24911]
ENSCJAG00000013719	KNOWN_BY_PROJECTION	protein_coding	AADACL4	chromosome:C_jacchus3.2.1:7:1:155834243:1	47455509	47475490	D	arylacetamide deacetylase-like 4 [Source:HGNC Symbol;Acc:HGNC:32038]
ENSCJAG00000013722	KNOWN_BY_PROJECTION	protein_coding	AADACL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	47504863	47514994	D	arylacetamide deacetylase-like 3 [Source:HGNC Symbol;Acc:HGNC:32037]
ENSCJAG00000013736	KNOWN	protein_coding	C1ORF158	chromosome:C_jacchus3.2.1:7:1:155834243:1	47539477	47553273	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025254}; Uncharacterized protein C1orf158 {ECO:0000313|EMBL:JAB21909.1}  [Source:UniProtKB/TrEMBL;Acc:F6WMT0]
ENSCJAG00000018205	KNOWN	protein_coding	GCH1	chromosome:C_jacchus3.2.1:10:1:132174527:1	79450996	79474160	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033677}  [Source:UniProtKB/TrEMBL;Acc:F6Q2W7]
ENSCJAG00000013740	NOVEL	pseudogene	ENSCJAG00000013740	chromosome:C_jacchus3.2.1:7:1:155834243:1	47594046	47594591	R	<no descrition>
ENSCJAG00000004389	KNOWN_BY_PROJECTION	protein_coding	FAM162B	chromosome:C_jacchus3.2.1:4:1:171630274:1	116626188	116640786	R	family with sequence similarity 162, member B [Source:HGNC Symbol;Acc:HGNC:21549]
ENSCJAG00000013747	NOVEL	protein_coding	ENSCJAG00000013747	chromosome:C_jacchus3.2.1:7:1:155834243:1	47629994	47639409	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025286}  [Source:UniProtKB/TrEMBL;Acc:F6VI39]
ENSCJAG00000008486	KNOWN	protein_coding	SCAMP3	chromosome:C_jacchus3.2.1:18:1:47448759:1	9284389	9291036	R	Secretory carrier-associated membrane protein 3 isoform 2 {ECO:0000313|EMBL:JAB44195.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015682}  [Source:UniProtKB/TrEMBL;Acc:F7GNZ6]
ENSCJAG00000018208	KNOWN_BY_PROJECTION	protein_coding	WDHD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	79563307	79644968	R	WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
ENSCJAG00000019116	KNOWN_BY_PROJECTION	protein_coding	ADM2	chromosome:C_jacchus3.2.1:1:1:210400635:1	209759564	210006391	D	adrenomedullin 2 [Source:HGNC Symbol;Acc:HGNC:28898]
ENSCJAG00000003337	KNOWN	protein_coding	HDAC10	chromosome:C_jacchus3.2.1:1:1:210400635:1	209784648	209790295	R	Histone deacetylase 10 isoform 1 {ECO:0000313|EMBL:JAB03827.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049410}  [Source:UniProtKB/TrEMBL;Acc:F6UUE5]
ENSCJAG00000003628	NOVEL	protein_coding	ENSCJAG00000003628	chromosome:C_jacchus3.2.1:X:1:142054208:1	124536101	124537486	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052281}  [Source:UniProtKB/TrEMBL;Acc:F7IGU0]
ENSCJAG00000014100	NOVEL	protein_coding	ENSCJAG00000014100	chromosome:C_jacchus3.2.1:5:1:159171411:1	125021788	125022780	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025899}  [Source:UniProtKB/TrEMBL;Acc:F6YVF3]
ENSCJAG00000003626	KNOWN_BY_PROJECTION	protein_coding	RBMX	chromosome:C_jacchus3.2.1:X:1:142054208:1	124602604	124611608	R	RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:HGNC:9910]
ENSCJAG00000014087	KNOWN	protein_coding	ENSCJAG00000014087	chromosome:C_jacchus3.2.1:5:1:159171411:1	125024021	125026091	R	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7G6P0]
ENSCJAG00000013800	NOVEL	pseudogene	ENSCJAG00000013800	chromosome:C_jacchus3.2.1:X:1:142054208:1	125079697	125080454	D	<no descrition>
ENSCJAG00000013792	KNOWN	protein_coding	ZIC3	chromosome:C_jacchus3.2.1:X:1:142054208:1	125259630	125265238	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025370}; Zinc finger protein ZIC 3 {ECO:0000313|EMBL:JAB21584.1}  [Source:UniProtKB/TrEMBL;Acc:F6ZH47]
ENSCJAG00000014056	KNOWN_BY_PROJECTION	protein_coding	UNK	chromosome:C_jacchus3.2.1:5:1:159171411:1	125031128	125074241	D	unkempt family zinc finger [Source:HGNC Symbol;Acc:HGNC:29369]
ENSCJAG00000013791	NOVEL	protein_coding	ENSCJAG00000013791	chromosome:C_jacchus3.2.1:X:1:142054208:1	125384037	125394826	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F6SNL5]
ENSCJAG00000034772	NOVEL	pseudogene	ENSCJAG00000034772	chromosome:C_jacchus3.2.1:X:1:142054208:1	126042026	126042817	D	<no descrition>
ENSCJAG00000001823	NOVEL	protein_coding	ENSCJAG00000001823	chromosome:C_jacchus3.2.1:22:1:49145316:1	24526496	24609630	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003303}  [Source:UniProtKB/TrEMBL;Acc:F7EN35]
ENSCJAG00000003282	KNOWN	protein_coding	MAPK11	chromosome:C_jacchus3.2.1:1:1:210400635:1	209803653	209810557	R	Mitogen-activated protein kinase 11 {ECO:0000313|EMBL:JAB37965.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029339}  [Source:UniProtKB/TrEMBL;Acc:F7ICD8]
ENSCJAG00000010301	KNOWN	protein_coding	FGF13	chromosome:C_jacchus3.2.1:X:1:142054208:1	126302914	126684427	R	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F6PUR3]
ENSCJAG00000037619	KNOWN	protein_coding	WBP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	125097891	125106909	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025724}; WW domain-binding protein 2 {ECO:0000313|EMBL:JAB02995.1}  [Source:UniProtKB/TrEMBL;Acc:F6X3I1]
ENSCJAG00000013980	KNOWN_BY_PROJECTION	protein_coding	TRIM47	chromosome:C_jacchus3.2.1:5:1:159171411:1	125124045	125131414	R	tripartite motif containing 47 [Source:HGNC Symbol;Acc:HGNC:19020]
ENSCJAG00000032872	NOVEL	pseudogene	ENSCJAG00000032872	chromosome:C_jacchus3.2.1:22:1:49145316:1	24648758	24649123	R	<no descrition>
ENSCJAG00000018365	KNOWN	protein_coding	ZNF536	chromosome:C_jacchus3.2.1:22:1:49145316:1	24970830	25167418	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034011}; Zinc finger protein 536 {ECO:0000313|EMBL:JAB45397.1}  [Source:UniProtKB/TrEMBL;Acc:F7BD83]
ENSCJAG00000013763	NOVEL	protein_coding	ENSCJAG00000013763	chromosome:C_jacchus3.2.1:7:1:155834243:1	47641163	47642399	R	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7C070]
ENSCJAG00000018374	KNOWN_BY_PROJECTION	protein_coding	TSHZ3	chromosome:C_jacchus3.2.1:22:1:49145316:1	25873385	25876853	R	teashirt zinc finger homeobox 3 [Source:HGNC Symbol;Acc:HGNC:30700]
ENSCJAG00000031665	NOVEL	pseudogene	ENSCJAG00000031665	chromosome:C_jacchus3.2.1:22:1:49145316:1	26809689	26810398	R	<no descrition>
ENSCJAG00000013769	KNOWN_BY_PROJECTION	protein_coding	LRRC38	chromosome:C_jacchus3.2.1:7:1:155834243:1	47679304	47720746	R	leucine rich repeat containing 38 [Source:HGNC Symbol;Acc:HGNC:27005]
ENSCJAG00000018378	KNOWN	protein_coding	ZNF507	chromosome:C_jacchus3.2.1:22:1:49145316:1	26877784	26915207	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034035}; Zinc finger protein 507 {ECO:0000313|EMBL:JAB04175.1}  [Source:UniProtKB/TrEMBL;Acc:F7AC54]
ENSCJAG00000010284	KNOWN_BY_PROJECTION	protein_coding	F9	chromosome:C_jacchus3.2.1:X:1:142054208:1	127285995	127318206	D	coagulation factor IX [Source:HGNC Symbol;Acc:HGNC:3551]
ENSCJAG00000013772	KNOWN_BY_PROJECTION	protein_coding	PDPN	chromosome:C_jacchus3.2.1:7:1:155834243:1	47783140	47818218	D	podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
ENSCJAG00000008447	KNOWN	protein_coding	CLK2	chromosome:C_jacchus3.2.1:18:1:47448759:1	9291526	9306338	R	Dual specificity protein kinase CLK2 {ECO:0000313|EMBL:JAB05087.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015609}  [Source:UniProtKB/TrEMBL;Acc:F7H9U4]
ENSCJAG00000004373	KNOWN_BY_PROJECTION	protein_coding	GPRC6A	chromosome:C_jacchus3.2.1:4:1:171630274:1	116664423	116699328	R	G protein-coupled receptor, class C, group 6, member A [Source:HGNC Symbol;Acc:HGNC:18510]
ENSCJAG00000013782	KNOWN	protein_coding	PRDM2	chromosome:C_jacchus3.2.1:7:1:155834243:1	47896336	48020663	D	PR domain zinc finger protein 2 isoform b {ECO:0000313|EMBL:JAB31807.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025358}  [Source:UniProtKB/TrEMBL;Acc:F7AGI5]
ENSCJAG00000018385	KNOWN_BY_PROJECTION	protein_coding	DPY19L3	chromosome:C_jacchus3.2.1:22:1:49145316:1	26931702	27002806	D	dpy-19-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:27120]
ENSCJAG00000013976	KNOWN_BY_PROJECTION	protein_coding	TRIM65	chromosome:C_jacchus3.2.1:5:1:159171411:1	125140968	125142595	R	tripartite motif containing 65 [Source:HGNC Symbol;Acc:HGNC:27316]
ENSCJAG00000008920	KNOWN_BY_PROJECTION	protein_coding	KAZN	chromosome:C_jacchus3.2.1:7:1:155834243:1	49339578	49410338	D	kazrin, periplakin interacting protein [Source:HGNC Symbol;Acc:HGNC:29173]
ENSCJAG00000013973	KNOWN	protein_coding	MRPL38	chromosome:C_jacchus3.2.1:5:1:159171411:1	125152009	125155411	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025682}  [Source:UniProtKB/TrEMBL;Acc:F6ZWJ2]
ENSCJAG00000018410	KNOWN	protein_coding	PDCD5	chromosome:C_jacchus3.2.1:22:1:49145316:1	27074330	27080695	D	Programmed cell death protein 5 {ECO:0000313|EMBL:JAB41693.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034106}  [Source:UniProtKB/TrEMBL;Acc:F6YB48]
ENSCJAG00000013928	NOVEL	protein_coding	ENSCJAG00000013928	chromosome:C_jacchus3.2.1:5:1:159171411:1	125161151	125189681	R	<no descrition>
ENSCJAG00000004349	KNOWN_BY_PROJECTION	protein_coding	RFX6	chromosome:C_jacchus3.2.1:4:1:171630274:1	116736563	116794213	D	regulatory factor X, 6 [Source:HGNC Symbol;Acc:HGNC:21478]
ENSCJAG00000018416	KNOWN	protein_coding	ANKRD27	chromosome:C_jacchus3.2.1:22:1:49145316:1	27083725	27157944	R	Ankyrin repeat domain-containing protein 27 {ECO:0000313|EMBL:JAB10005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034170}  [Source:UniProtKB/TrEMBL;Acc:F6VVC0]
ENSCJAG00000003197	KNOWN_BY_PROJECTION	protein_coding	PLXNB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	209815505	209830866	R	plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]
ENSCJAG00000013890	KNOWN_BY_PROJECTION	protein_coding	ACOX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	125200014	125229335	R	acyl-CoA oxidase 1, palmitoyl [Source:HGNC Symbol;Acc:HGNC:119]
ENSCJAG00000008422	KNOWN_BY_PROJECTION	protein_coding	HCN3	chromosome:C_jacchus3.2.1:18:1:47448759:1	9305883	9318177	D	hyperpolarization activated cyclic nucleotide gated potassium channel 3 [Source:HGNC Symbol;Acc:HGNC:19183]
ENSCJAG00000004286	KNOWN_BY_PROJECTION	protein_coding	ROS1	chromosome:C_jacchus3.2.1:4:1:171630274:1	117080358	117268572	R	ROS proto-oncogene 1 , receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:10261]
ENSCJAG00000008910	KNOWN	protein_coding	TMEM51	chromosome:C_jacchus3.2.1:7:1:155834243:1	49457245	49521000	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016303}  [Source:UniProtKB/TrEMBL;Acc:F7CKW2]
ENSCJAG00000008393	KNOWN_BY_PROJECTION	protein_coding	PKLR	chromosome:C_jacchus3.2.1:18:1:47448759:1	9317636	9329661	R	pyruvate kinase, liver and RBC [Source:HGNC Symbol;Acc:HGNC:9020]
ENSCJAG00000010156	KNOWN	protein_coding	MCF2	chromosome:C_jacchus3.2.1:X:1:142054208:1	127340871	127474777	R	Proto-oncogene DBL isoform b {ECO:0000313|EMBL:JAB25107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018911}  [Source:UniProtKB/TrEMBL;Acc:F7H0I7]
ENSCJAG00000018441	KNOWN	protein_coding	NUDT19	chromosome:C_jacchus3.2.1:22:1:49145316:1	27175600	27184189	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034175}  [Source:UniProtKB/TrEMBL;Acc:F6VV74]
ENSCJAG00000008888	KNOWN_BY_PROJECTION	protein_coding	FHAD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	49608642	49735848	D	forkhead-associated (FHA) phosphopeptide binding domain 1 [Source:HGNC Symbol;Acc:HGNC:29408]
ENSCJAG00000013878	KNOWN	protein_coding	TEN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	125229491	125259157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025510}  [Source:UniProtKB/TrEMBL;Acc:F6ZFW3]
ENSCJAG00000013885	NOVEL	pseudogene	ENSCJAG00000013885	chromosome:C_jacchus3.2.1:5:1:159171411:1	125239386	125240823	R	<no descrition>
ENSCJAG00000013874	NOVEL	protein_coding	ENSCJAG00000013874	chromosome:C_jacchus3.2.1:5:1:159171411:1	125260132	125265666	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025496}  [Source:UniProtKB/TrEMBL;Acc:F7BHJ3]
ENSCJAG00000000763	KNOWN_BY_PROJECTION	protein_coding	TDRD12	chromosome:C_jacchus3.2.1:22:1:49145316:1	27202188	27265790	D	tudor domain containing 12 [Source:HGNC Symbol;Acc:HGNC:25044]
ENSCJAG00000000755	KNOWN	protein_coding	SLC7A9	chromosome:C_jacchus3.2.1:22:1:49145316:1	27277338	27307879	R	B(0,+)-type amino acid transporter 1 {ECO:0000313|EMBL:JAB04721.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001290}  [Source:UniProtKB/TrEMBL;Acc:F6X914]
ENSCJAG00000008844	KNOWN_BY_PROJECTION	protein_coding	CTRC	chromosome:C_jacchus3.2.1:7:1:155834243:1	49746269	49755042	D	chymotrypsin C (caldecrin) [Source:HGNC Symbol;Acc:HGNC:2523]
ENSCJAG00000003186	KNOWN_BY_PROJECTION	protein_coding	DENND6B	chromosome:C_jacchus3.2.1:1:1:210400635:1	209851826	209859156	R	DENN/MADD domain containing 6B [Source:HGNC Symbol;Acc:HGNC:32690]
ENSCJAG00000018289	KNOWN	protein_coding	SOCS4	chromosome:C_jacchus3.2.1:10:1:132174527:1	79645496	79661516	D	Suppressor of cytokine signaling 4 {ECO:0000313|EMBL:JAB02786.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033851}  [Source:UniProtKB/TrEMBL;Acc:F6QNB0]
ENSCJAG00000018292	KNOWN	protein_coding	MAPK1IP1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	79668942	79685891	D	MAPK-interacting and spindle-stabilizing protein-like {ECO:0000313|EMBL:JAB07860.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033859}  [Source:UniProtKB/TrEMBL;Acc:F6QMV7]
ENSCJAG00000013819	KNOWN_BY_PROJECTION	protein_coding	EVPL	chromosome:C_jacchus3.2.1:5:1:159171411:1	125267658	125291292	R	envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
ENSCJAG00000018296	KNOWN_BY_PROJECTION	protein_coding	LGALS3	chromosome:C_jacchus3.2.1:10:1:132174527:1	79755793	79769647	D	lectin, galactoside-binding, soluble, 3 [Source:HGNC Symbol;Acc:HGNC:6563]
ENSCJAG00000008785	NOVEL	protein_coding	ENSCJAG00000008785	chromosome:C_jacchus3.2.1:7:1:155834243:1	49767023	49785830	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016194}  [Source:UniProtKB/TrEMBL;Acc:F6ZPN5]
ENSCJAG00000008265	NOVEL	pseudogene	ENSCJAG00000008265	chromosome:C_jacchus3.2.1:2:1:204313951:1	81083930	81084857	D	<no descrition>
ENSCJAG00000008261	NOVEL	pseudogene	ENSCJAG00000008261	chromosome:C_jacchus3.2.1:2:1:204313951:1	81232068	81232438	D	<no descrition>
ENSCJAG00000008225	KNOWN	protein_coding	ZNF608	chromosome:C_jacchus3.2.1:2:1:204313951:1	81300577	81430403	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015242}; Zinc finger protein 608 {ECO:0000313|EMBL:JAB02713.1}  [Source:UniProtKB/TrEMBL;Acc:F7GHW5]
ENSCJAG00000000731	KNOWN_BY_PROJECTION	protein_coding	CEP89	chromosome:C_jacchus3.2.1:22:1:49145316:1	27316960	27388910	R	centrosomal protein 89kDa [Source:HGNC Symbol;Acc:HGNC:25907]
ENSCJAG00000019177	KNOWN_BY_PROJECTION	protein_coding	ODF3B	chromosome:C_jacchus3.2.1:1:1:210400635:1	209860020	210058194	R	outer dense fiber of sperm tails 3B [Source:HGNC Symbol;Acc:HGNC:34388]
ENSCJAG00000000728	KNOWN	protein_coding	C19ORF40	chromosome:C_jacchus3.2.1:22:1:49145316:1	27389785	27396258	D	Fanconi anemia-associated protein of 24 kDa {ECO:0000313|EMBL:JAB01702.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001249}  [Source:UniProtKB/TrEMBL;Acc:F6Z0P2]
ENSCJAG00000008218	NOVEL	pseudogene	ENSCJAG00000008218	chromosome:C_jacchus3.2.1:2:1:204313951:1	81491943	81493776	R	<no descrition>
ENSCJAG00000008214	NOVEL	protein_coding	ENSCJAG00000008214	chromosome:C_jacchus3.2.1:2:1:204313951:1	81639232	81640604	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015173}  [Source:UniProtKB/TrEMBL;Acc:F7HAP7]
ENSCJAG00000018306	KNOWN_BY_PROJECTION	protein_coding	DLGAP5	chromosome:C_jacchus3.2.1:10:1:132174527:1	79772952	79819127	R	discs, large (Drosophila) homolog-associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]
ENSCJAG00000008364	KNOWN	protein_coding	ENSCJAG00000008364	chromosome:C_jacchus3.2.1:18:1:47448759:1	9338634	9350793	D	Farnesyl pyrophosphate synthase isoform a {ECO:0000313|EMBL:JAB04517.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015431}  [Source:UniProtKB/TrEMBL;Acc:F7GUQ3]
ENSCJAG00000000708	KNOWN_BY_PROJECTION	protein_coding	RHPN2	chromosome:C_jacchus3.2.1:22:1:49145316:1	27397831	27478928	R	rhophilin, Rho GTPase binding protein 2 [Source:HGNC Symbol;Acc:HGNC:19974]
ENSCJAG00000019031	KNOWN	protein_coding	PPP6R2	chromosome:C_jacchus3.2.1:1:1:210400635:1	209868756	209965739	D	Serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform 3 {ECO:0000313|EMBL:JAB30046.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043586}  [Source:UniProtKB/TrEMBL;Acc:F7ILZ6]
ENSCJAG00000017348	KNOWN	protein_coding	CSNK1G3	chromosome:C_jacchus3.2.1:2:1:204313951:1	82488604	82592587	R	Casein kinase I isoform gamma-3 isoform 2 {ECO:0000313|EMBL:JAB04384.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048348}  [Source:UniProtKB/TrEMBL;Acc:F7GMT3]
ENSCJAG00000000684	KNOWN	protein_coding	GPATCH1	chromosome:C_jacchus3.2.1:22:1:49145316:1	27489750	27542067	D	G patch domain-containing protein 1 {ECO:0000313|EMBL:JAB18096.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001208}  [Source:UniProtKB/TrEMBL;Acc:F6ZI94]
ENSCJAG00000004345	KNOWN_BY_PROJECTION	protein_coding	VGLL2	chromosome:C_jacchus3.2.1:4:1:171630274:1	117103271	117110538	D	vestigial-like family member 2 [Source:HGNC Symbol;Acc:HGNC:20232]
ENSCJAG00000008263	KNOWN	protein_coding	RUSC1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9350994	9361153	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015373}  [Source:UniProtKB/TrEMBL;Acc:F7CVI5]
ENSCJAG00000004257	KNOWN_BY_PROJECTION	protein_coding	DCBLD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	117354087	117399847	D	discoidin, CUB and LCCL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21479]
ENSCJAG00000008732	KNOWN_BY_PROJECTION	protein_coding	CASP9	chromosome:C_jacchus3.2.1:7:1:155834243:1	49787361	49814140	R	caspase 9, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:1511]
ENSCJAG00000018356	KNOWN_BY_PROJECTION	protein_coding	RPL7A	chromosome:C_jacchus3.2.1:10:1:132174527:1	79859761	79860588	R	ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
ENSCJAG00000021876	KNOWN	protein_coding	FBXO34	chromosome:C_jacchus3.2.1:10:1:132174527:1	79910997	80009851	D	F-box only protein 34 {ECO:0000313|EMBL:JAB26613.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040568}  [Source:UniProtKB/TrEMBL;Acc:F7IQW2]
ENSCJAG00000018359	NOVEL	pseudogene	ENSCJAG00000018359	chromosome:C_jacchus3.2.1:10:1:132174527:1	79988596	79989001	R	<no descrition>
ENSCJAG00000018362	KNOWN	protein_coding	ATG14	chromosome:C_jacchus3.2.1:10:1:132174527:1	80025129	80071440	R	Beclin 1-associated autophagy-related key regulator {ECO:0000313|EMBL:JAB13937.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034010}  [Source:UniProtKB/TrEMBL;Acc:F7BD95]
ENSCJAG00000008656	KNOWN	protein_coding	DNAJC16	chromosome:C_jacchus3.2.1:7:1:155834243:1	49817401	49861211	D	DnaJ homolog subfamily C member 16 {ECO:0000313|EMBL:JAB18877.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016031}  [Source:UniProtKB/TrEMBL;Acc:F6XIZ7]
ENSCJAG00000017322	KNOWN	protein_coding	CEP120	chromosome:C_jacchus3.2.1:2:1:204313951:1	82676517	82762823	D	Centrosomal protein of 120 kDa isoform 1 {ECO:0000313|EMBL:JAB07807.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044766}  [Source:UniProtKB/TrEMBL;Acc:F7FVZ0]
ENSCJAG00000008645	KNOWN_BY_PROJECTION	protein_coding	AGMAT	chromosome:C_jacchus3.2.1:7:1:155834243:1	49864277	49880097	R	agmatine ureohydrolase (agmatinase) [Source:HGNC Symbol;Acc:HGNC:18407]
ENSCJAG00000000669	KNOWN_BY_PROJECTION	protein_coding	WDR88	chromosome:C_jacchus3.2.1:22:1:49145316:1	27543791	27579236	D	WD repeat domain 88 [Source:HGNC Symbol;Acc:HGNC:26999]
ENSCJAG00000008654	NOVEL	pseudogene	ENSCJAG00000008654	chromosome:C_jacchus3.2.1:7:1:155834243:1	49871826	49873017	D	<no descrition>
ENSCJAG00000000682	NOVEL	protein_coding	ENSCJAG00000000682	chromosome:C_jacchus3.2.1:22:1:49145316:1	27575109	27576224	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001172}  [Source:UniProtKB/TrEMBL;Acc:F6UY45]
ENSCJAG00000008625	KNOWN_BY_PROJECTION	protein_coding	DDI2	chromosome:C_jacchus3.2.1:7:1:155834243:1	49918676	49972023	D	DNA-damage inducible 1 homolog 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24578]
ENSCJAG00000008601	KNOWN	protein_coding	PLEKHM2	chromosome:C_jacchus3.2.1:7:1:155834243:1	50002835	50052084	D	Pleckstrin homology domain-containing family M member 2 {ECO:0000313|EMBL:JAB07781.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015871}  [Source:UniProtKB/TrEMBL;Acc:F7GFP9]
ENSCJAG00000004242	KNOWN	protein_coding	GOPC	chromosome:C_jacchus3.2.1:4:1:171630274:1	117414888	117456127	R	Golgi-associated PDZ and coiled-coil motif-containing protein isoform a {ECO:0000313|EMBL:JAB50853.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007696}  [Source:UniProtKB/TrEMBL;Acc:F6T1B3]
ENSCJAG00000008596	KNOWN_BY_PROJECTION	protein_coding	SLC25A34	chromosome:C_jacchus3.2.1:7:1:155834243:1	50053589	50057266	D	solute carrier family 25, member 34 [Source:HGNC Symbol;Acc:HGNC:27653]
ENSCJAG00000008582	KNOWN_BY_PROJECTION	protein_coding	TMEM82	chromosome:C_jacchus3.2.1:7:1:155834243:1	50060265	50066305	D	transmembrane protein 82 [Source:HGNC Symbol;Acc:HGNC:32350]
ENSCJAG00000000662	KNOWN_BY_PROJECTION	protein_coding	LRP3	chromosome:C_jacchus3.2.1:22:1:49145316:1	27592873	27604783	D	low density lipoprotein receptor-related protein 3 [Source:HGNC Symbol;Acc:HGNC:6695]
ENSCJAG00000008580	NOVEL	protein_coding	ENSCJAG00000008580	chromosome:C_jacchus3.2.1:7:1:155834243:1	50085050	50108053	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047941}  [Source:UniProtKB/TrEMBL;Acc:F7EF76]
ENSCJAG00000000642	KNOWN	protein_coding	SLC7A10	chromosome:C_jacchus3.2.1:22:1:49145316:1	27605842	27623336	R	Asc-type amino acid transporter 1 {ECO:0000313|EMBL:JAB18894.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001128}  [Source:UniProtKB/TrEMBL;Acc:F6W3J6]
ENSCJAG00000010095	KNOWN_BY_PROJECTION	protein_coding	ATP11C	chromosome:C_jacchus3.2.1:X:1:142054208:1	127494912	127596898	R	ATPase, class VI, type 11C [Source:HGNC Symbol;Acc:HGNC:13554]
ENSCJAG00000013738	KNOWN	protein_coding	SRP68	chromosome:C_jacchus3.2.1:5:1:159171411:1	125301767	125343932	R	Signal recognition particle subunit SRP68 {ECO:0000256|PIRNR:PIRNR038995}  [Source:UniProtKB/TrEMBL;Acc:F6YZH4]
ENSCJAG00000018372	KNOWN_BY_PROJECTION	protein_coding	TBPL2	chromosome:C_jacchus3.2.1:10:1:132174527:1	80074780	80105333	R	TATA box binding protein like 2 [Source:HGNC Symbol;Acc:HGNC:19841]
ENSCJAG00000019051	KNOWN_BY_PROJECTION	protein_coding	SBF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	209967423	209990273	R	SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
ENSCJAG00000004239	NOVEL	pseudogene	ENSCJAG00000004239	chromosome:C_jacchus3.2.1:4:1:171630274:1	117881918	117883663	D	<no descrition>
ENSCJAG00000004231	KNOWN	protein_coding	SLC35F1	chromosome:C_jacchus3.2.1:4:1:171630274:1	118010156	118191797	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007670}  [Source:UniProtKB/TrEMBL;Acc:F6TD75]
ENSCJAG00000018376	NOVEL	protein_coding	ENSCJAG00000018376	chromosome:C_jacchus3.2.1:10:1:132174527:1	80206932	80208381	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052300}  [Source:UniProtKB/TrEMBL;Acc:F7HXU4]
ENSCJAG00000034363	NOVEL	protein_coding	ENSCJAG00000034363	chromosome:C_jacchus3.2.1:10:1:132174527:1	80284650	80285012	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034346}  [Source:UniProtKB/TrEMBL;Acc:F6Y9I7]
ENSCJAG00000035363	KNOWN	protein_coding	CEBPG	chromosome:C_jacchus3.2.1:22:1:49145316:1	27765863	27775516	D	CCAAT/enhancer-binding protein gamma {ECO:0000313|EMBL:JAB09593.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048357}  [Source:UniProtKB/TrEMBL;Acc:F7GML5]
ENSCJAG00000004178	KNOWN	protein_coding	CEP85L	chromosome:C_jacchus3.2.1:4:1:171630274:1	118341317	118599536	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007653}  [Source:UniProtKB/TrEMBL;Acc:F6TZB1]
ENSCJAG00000032936	NOVEL	protein_coding	ENSCJAG00000032936	chromosome:C_jacchus3.2.1:2:1:204313951:1	82740244	82743261	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050740}  [Source:UniProtKB/TrEMBL;Acc:F7DNZ2]
ENSCJAG00000017318	KNOWN	protein_coding	PRDM6	chromosome:C_jacchus3.2.1:2:1:204313951:1	82919772	83013402	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044308}  [Source:UniProtKB/TrEMBL;Acc:F7GRH6]
ENSCJAG00000008157	KNOWN	protein_coding	ASH1L	chromosome:C_jacchus3.2.1:18:1:47448759:1	9364653	9670992	R	Histone-lysine N-methyltransferase ASH1L {ECO:0000313|EMBL:JAB11629.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015181}  [Source:UniProtKB/TrEMBL;Acc:F7HAH4]
ENSCJAG00000017311	KNOWN	protein_coding	PPIC	chromosome:C_jacchus3.2.1:2:1:204313951:1	83065897	83079160	D	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7IA22]
ENSCJAG00000017306	KNOWN	protein_coding	SNX24	chromosome:C_jacchus3.2.1:2:1:204313951:1	83091788	83172566	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031844}  [Source:UniProtKB/TrEMBL;Acc:F7IEQ2]
ENSCJAG00000008310	NOVEL	pseudogene	ENSCJAG00000008310	chromosome:C_jacchus3.2.1:7:1:155834243:1	50166945	50167978	D	<no descrition>
ENSCJAG00000013812	NOVEL	pseudogene	ENSCJAG00000013812	chromosome:C_jacchus3.2.1:5:1:159171411:1	125332219	125332839	R	<no descrition>
ENSCJAG00000013809	KNOWN_BY_PROJECTION	protein_coding	GALR2	chromosome:C_jacchus3.2.1:5:1:159171411:1	125348718	125351406	D	galanin receptor 2 [Source:HGNC Symbol;Acc:HGNC:4133]
ENSCJAG00000008527	KNOWN_BY_PROJECTION	protein_coding	SPEN	chromosome:C_jacchus3.2.1:7:1:155834243:1	50173741	50271372	D	spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
ENSCJAG00000000637	KNOWN	protein_coding	PEPD	chromosome:C_jacchus3.2.1:22:1:49145316:1	27780029	27912601	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042767}; Xaa-Pro dipeptidase isoform 1 {ECO:0000313|EMBL:JAB03255.1}  [Source:UniProtKB/TrEMBL;Acc:F6V2W6]
ENSCJAG00000008572	NOVEL	pseudogene	ENSCJAG00000008572	chromosome:C_jacchus3.2.1:7:1:155834243:1	50184192	50184984	R	<no descrition>
ENSCJAG00000008092	KNOWN_BY_PROJECTION	protein_coding	MSTO1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9623386	9726735	D	misato 1, mitochondrial distribution and morphology regulator [Source:HGNC Symbol;Acc:HGNC:29678]
ENSCJAG00000017239	KNOWN	protein_coding	SNX2	chromosome:C_jacchus3.2.1:2:1:204313951:1	83267809	83328095	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031822}  [Source:UniProtKB/TrEMBL;Acc:F7IJD6]
ENSCJAG00000008499	KNOWN	protein_coding	ZBTB17	chromosome:C_jacchus3.2.1:7:1:155834243:1	50273347	50309994	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050330}; Zinc finger and BTB domain-containing protein 17 isoform 1 {ECO:0000313|EMBL:JAB31446.1}  [Source:UniProtKB/TrEMBL;Acc:F7GFE8]
ENSCJAG00000018382	NOVEL	protein_coding	ENSCJAG00000018382	chromosome:C_jacchus3.2.1:10:1:132174527:1	80306282	80364095	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034172}  [Source:UniProtKB/TrEMBL;Acc:F6VV98]
ENSCJAG00000010089	KNOWN_BY_PROJECTION	protein_coding	CXorf66	chromosome:C_jacchus3.2.1:X:1:142054208:1	127739059	127748886	R	chromosome X open reading frame 66 [Source:HGNC Symbol;Acc:HGNC:33743]
ENSCJAG00000031267	NOVEL	protein_coding	ENSCJAG00000031267	chromosome:C_jacchus3.2.1:X:1:142054208:1	127862833	127864207	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031599}  [Source:UniProtKB/TrEMBL;Acc:F7IP93]
ENSCJAG00000010086	NOVEL	protein_coding	ENSCJAG00000010086	chromosome:C_jacchus3.2.1:X:1:142054208:1	128542250	128544349	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018535}  [Source:UniProtKB/TrEMBL;Acc:F7ECJ0]
ENSCJAG00000010083	KNOWN_BY_PROJECTION	protein_coding	CDR1	chromosome:C_jacchus3.2.1:X:1:142054208:1	128615289	128616103	R	cerebellar degeneration-related protein 1, 34kDa [Source:HGNC Symbol;Acc:HGNC:1798]
ENSCJAG00000008338	KNOWN_BY_PROJECTION	protein_coding	MAGEC2	chromosome:C_jacchus3.2.1:X:1:142054208:1	129644457	129646298	R	melanoma antigen family C, 2 [Source:HGNC Symbol;Acc:HGNC:13574]
ENSCJAG00000013734	KNOWN_BY_PROJECTION	protein_coding	ZACN	chromosome:C_jacchus3.2.1:5:1:159171411:1	125353224	125357508	D	zinc activated ligand-gated ion channel [Source:HGNC Symbol;Acc:HGNC:29504]
ENSCJAG00000008332	KNOWN	protein_coding	SLITRK4	chromosome:C_jacchus3.2.1:X:1:142054208:1	130923442	130930604	R	SLIT and NTRK-like protein 4 {ECO:0000313|EMBL:JAB27199.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045790}  [Source:UniProtKB/TrEMBL;Acc:F6S698]
ENSCJAG00000008326	NOVEL	protein_coding	ENSCJAG00000008326	chromosome:C_jacchus3.2.1:X:1:142054208:1	131025068	131026165	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015346}  [Source:UniProtKB/TrEMBL;Acc:F7DVG1]
ENSCJAG00000019118	KNOWN_BY_PROJECTION	protein_coding	MIOX	chromosome:C_jacchus3.2.1:1:1:210400635:1	210011921	210014025	D	myo-inositol oxygenase [Source:HGNC Symbol;Acc:HGNC:14522]
ENSCJAG00000008323	NOVEL	protein_coding	ENSCJAG00000008323	chromosome:C_jacchus3.2.1:X:1:142054208:1	131418625	131419698	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015343}  [Source:UniProtKB/TrEMBL;Acc:F7DVH8]
ENSCJAG00000008316	NOVEL	protein_coding	ENSCJAG00000008316	chromosome:C_jacchus3.2.1:X:1:142054208:1	132395095	132396084	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015338}  [Source:UniProtKB/TrEMBL;Acc:F7E9M8]
ENSCJAG00000006009	NOVEL	protein_coding	ENSCJAG00000006009	chromosome:C_jacchus3.2.1:X:1:142054208:1	132443936	132488418	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011028}  [Source:UniProtKB/TrEMBL;Acc:F7IKT0]
ENSCJAG00000010344	KNOWN_BY_PROJECTION	protein_coding	CHST8	chromosome:C_jacchus3.2.1:22:1:49145316:1	28011933	28157314	D	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 [Source:HGNC Symbol;Acc:HGNC:15993]
ENSCJAG00000005992	KNOWN	protein_coding	SLITRK2	chromosome:C_jacchus3.2.1:X:1:142054208:1	133096317	133104510	D	SLIT and NTRK-like protein 2 {ECO:0000313|EMBL:JAB22354.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011017}  [Source:UniProtKB/TrEMBL;Acc:F7IN27]
ENSCJAG00000005986	NOVEL	protein_coding	ENSCJAG00000005986	chromosome:C_jacchus3.2.1:X:1:142054208:1	133231172	133233916	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011001}  [Source:UniProtKB/TrEMBL;Acc:F7IN66]
ENSCJAG00000010352	KNOWN	protein_coding	KCTD15	chromosome:C_jacchus3.2.1:22:1:49145316:1	28189179	28208777	D	BTB/POZ domain-containing protein KCTD15 isoform 2 {ECO:0000313|EMBL:JAB11321.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019071}  [Source:UniProtKB/TrEMBL;Acc:F6T619]
ENSCJAG00000003914	NOVEL	protein_coding	ENSCJAG00000003914	chromosome:C_jacchus3.2.1:X:1:142054208:1	135105849	135118198	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007123}  [Source:UniProtKB/TrEMBL;Acc:F6S8S5]
ENSCJAG00000013685	KNOWN	protein_coding	EXOC7	chromosome:C_jacchus3.2.1:5:1:159171411:1	125358388	125381378	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045626}  [Source:UniProtKB/TrEMBL;Acc:F6QQ23]
ENSCJAG00000019155	KNOWN	protein_coding	NCAPH2	chromosome:C_jacchus3.2.1:1:1:210400635:1	210036346	210049178	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035577}  [Source:UniProtKB/TrEMBL;Acc:F7E4C5]
ENSCJAG00000004229	KNOWN	protein_coding	PLN	chromosome:C_jacchus3.2.1:4:1:171630274:1	118437675	118529427	D	Cardiac phospholamban {ECO:0000313|EMBL:JAB04633.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045516}  [Source:UniProtKB/TrEMBL;Acc:F6TR48]
ENSCJAG00000032176	NOVEL	protein_coding	ENSCJAG00000032176	chromosome:C_jacchus3.2.1:22:1:49145316:1	28376628	28377101	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049908}  [Source:UniProtKB/TrEMBL;Acc:F6VC46]
ENSCJAG00000004148	KNOWN_BY_PROJECTION	protein_coding	MCM9	chromosome:C_jacchus3.2.1:4:1:171630274:1	118700837	118847453	R	minichromosome maintenance complex component 9 [Source:HGNC Symbol;Acc:HGNC:21484]
ENSCJAG00000003925	KNOWN	protein_coding	FMR1	chromosome:C_jacchus3.2.1:X:1:142054208:1	135108281	135146993	D	Fragile X mental retardation protein 1 isoform ISO9 {ECO:0000313|EMBL:JAB15453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007333}  [Source:UniProtKB/TrEMBL;Acc:F6RX02]
ENSCJAG00000013682	KNOWN_BY_PROJECTION	protein_coding	FOXJ1	chromosome:C_jacchus3.2.1:5:1:159171411:1	125410902	125416377	R	forkhead box J1 [Source:HGNC Symbol;Acc:HGNC:3816]
ENSCJAG00000008497	KNOWN_BY_PROJECTION	protein_coding	C1orf64	chromosome:C_jacchus3.2.1:7:1:155834243:1	50323377	50325396	D	chromosome 1 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28339]
ENSCJAG00000008481	KNOWN	protein_coding	HSPB7	chromosome:C_jacchus3.2.1:7:1:155834243:1	50340015	50343817	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015628}  [Source:UniProtKB/TrEMBL;Acc:F7H4N8]
ENSCJAG00000013654	KNOWN_BY_PROJECTION	protein_coding	RNF157	chromosome:C_jacchus3.2.1:5:1:159171411:1	125419907	125492902	R	ring finger protein 157 [Source:HGNC Symbol;Acc:HGNC:29402]
ENSCJAG00000010360	KNOWN_BY_PROJECTION	protein_coding	LSM14A	chromosome:C_jacchus3.2.1:22:1:49145316:1	28501870	28566388	D	LSM14A, SCD6 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24489]
ENSCJAG00000008426	KNOWN_BY_PROJECTION	protein_coding	CLCNKB	chromosome:C_jacchus3.2.1:7:1:155834243:1	50346796	50361222	D	chloride channel, voltage-sensitive Kb [Source:HGNC Symbol;Acc:HGNC:2027]
ENSCJAG00000013649	KNOWN_BY_PROJECTION	protein_coding	UBALD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	125534182	125540944	D	UBA-like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28438]
ENSCJAG00000019173	KNOWN_BY_PROJECTION	protein_coding	SCO2	chromosome:C_jacchus3.2.1:1:1:210400635:1	210049269	210051214	R	SCO2 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:HGNC:10604]
ENSCJAG00000004161	KNOWN	protein_coding	ASF1A	chromosome:C_jacchus3.2.1:4:1:171630274:1	118714042	118809705	D	Histone chaperone ASF1A {ECO:0000313|EMBL:JAB04713.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007577}  [Source:UniProtKB/TrEMBL;Acc:F6QXV7]
ENSCJAG00000008417	KNOWN	protein_coding	FAM131C	chromosome:C_jacchus3.2.1:7:1:155834243:1	50361688	50379409	R	Protein FAM131C {ECO:0000313|EMBL:JAB16393.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015503}  [Source:UniProtKB/TrEMBL;Acc:F7F0V3]
ENSCJAG00000013612	KNOWN_BY_PROJECTION	protein_coding	QRICH2	chromosome:C_jacchus3.2.1:5:1:159171411:1	125543723	125571988	R	glutamine rich 2 [Source:HGNC Symbol;Acc:HGNC:25326]
ENSCJAG00000037938	KNOWN_BY_PROJECTION	protein_coding	TYMP	chromosome:C_jacchus3.2.1:1:1:210400635:1	210051383	210055696	R	thymidine phosphorylase [Source:HGNC Symbol;Acc:HGNC:3148]
ENSCJAG00000004071	KNOWN_BY_PROJECTION	protein_coding	FAM184A	chromosome:C_jacchus3.2.1:4:1:171630274:1	118868323	118990067	R	family with sequence similarity 184, member A [Source:HGNC Symbol;Acc:HGNC:20991]
ENSCJAG00000010429	NOVEL	protein_coding	ENSCJAG00000010429	chromosome:C_jacchus3.2.1:22:1:49145316:1	28607337	28609921	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019210}  [Source:UniProtKB/TrEMBL;Acc:F6PIS2]
ENSCJAG00000008362	KNOWN_BY_PROJECTION	protein_coding	EPHA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	50424907	50457976	R	EPH receptor A2 [Source:HGNC Symbol;Acc:HGNC:3386]
ENSCJAG00000010433	KNOWN	protein_coding	KIAA0355	chromosome:C_jacchus3.2.1:22:1:49145316:1	28622338	28674842	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019288}; Uncharacterized protein KIAA0355 {ECO:0000313|EMBL:JAB08974.1}  [Source:UniProtKB/TrEMBL;Acc:F6SIW0]
ENSCJAG00000017196	KNOWN	protein_coding	SNCAIP	chromosome:C_jacchus3.2.1:2:1:204313951:1	83610645	83758879	R	Synphilin-1 isoform 1 {ECO:0000313|EMBL:JAB03439.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031682}  [Source:UniProtKB/TrEMBL;Acc:F7I7Q3]
ENSCJAG00000018520	KNOWN_BY_PROJECTION	protein_coding	PELI2	chromosome:C_jacchus3.2.1:10:1:132174527:1	80927213	81089158	D	pellino E3 ubiquitin protein ligase family member 2 [Source:HGNC Symbol;Acc:HGNC:8828]
ENSCJAG00000021902	NOVEL	protein_coding	ENSCJAG00000021902	chromosome:C_jacchus3.2.1:10:1:132174527:1	81195877	81196824	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051401}  [Source:UniProtKB/TrEMBL;Acc:F6UCC7]
ENSCJAG00000018523	KNOWN	protein_coding	TMEM260	chromosome:C_jacchus3.2.1:10:1:132174527:1	81377287	81457195	D	UPF0679 protein C14orf101 {ECO:0000313|EMBL:JAB11049.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034476}  [Source:UniProtKB/TrEMBL;Acc:F7IKC7]
ENSCJAG00000008325	KNOWN_BY_PROJECTION	protein_coding	ARHGEF19	chromosome:C_jacchus3.2.1:7:1:155834243:1	50499030	50515860	R	Rho guanine nucleotide exchange factor (GEF) 19 [Source:HGNC Symbol;Acc:HGNC:26604]
ENSCJAG00000010750	KNOWN_BY_PROJECTION	protein_coding	ZNF471	chromosome:C_jacchus3.2.1:22:1:49145316:1	28624250	28945726	R	zinc finger protein 471 [Source:HGNC Symbol;Acc:HGNC:23226]
ENSCJAG00000019187	KNOWN_BY_PROJECTION	protein_coding	KLHDC7B	chromosome:C_jacchus3.2.1:1:1:210400635:1	210078262	210080674	D	kelch domain containing 7B [Source:HGNC Symbol;Acc:HGNC:25145]
ENSCJAG00000019194	KNOWN_BY_PROJECTION	protein_coding	SYCE3	chromosome:C_jacchus3.2.1:1:1:210400635:1	210081797	210099326	R	synaptonemal complex central element protein 3 [Source:HGNC Symbol;Acc:HGNC:35245]
ENSCJAG00000035429	NOVEL	protein_coding	ENSCJAG00000035429	chromosome:C_jacchus3.2.1:X:1:142054208:1	135646720	135647448	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047432}  [Source:UniProtKB/TrEMBL;Acc:F7II64]
ENSCJAG00000010910	KNOWN_BY_PROJECTION	protein_coding	GPI	chromosome:C_jacchus3.2.1:22:1:49145316:1	28683732	28718139	D	glucose-6-phosphate isomerase [Source:HGNC Symbol;Acc:HGNC:4458]
ENSCJAG00000032625	NOVEL	protein_coding	ENSCJAG00000032625	chromosome:C_jacchus3.2.1:X:1:142054208:1	135691416	136093653	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000124}  [Source:UniProtKB/TrEMBL;Acc:F7EY26]
ENSCJAG00000000061	KNOWN	protein_coding	AFF2	chromosome:C_jacchus3.2.1:X:1:142054208:1	136141861	136179092	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000123}  [Source:UniProtKB/TrEMBL;Acc:F7EY32]
ENSCJAG00000004049	KNOWN	protein_coding	MAN1A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	119091714	119281557	R	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA {ECO:0000313|EMBL:JAB05794.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007390}  [Source:UniProtKB/TrEMBL;Acc:F6QEE1]
ENSCJAG00000018317	KNOWN	protein_coding	CPT1B	chromosome:C_jacchus3.2.1:1:1:210400635:1	210116486	210127455	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046830}  [Source:UniProtKB/TrEMBL;Acc:F7IPR1]
ENSCJAG00000000073	KNOWN	protein_coding	IDS	chromosome:C_jacchus3.2.1:X:1:142054208:1	136660573	136690638	R	Iduronate 2-sulfatase isoform a {ECO:0000313|EMBL:JAB06957.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000136}  [Source:UniProtKB/TrEMBL;Acc:F7EJG2]
ENSCJAG00000035376	NOVEL	protein_coding	ENSCJAG00000035376	chromosome:C_jacchus3.2.1:7:1:155834243:1	50519479	50520681	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042907}  [Source:UniProtKB/TrEMBL;Acc:F6XDI1]
ENSCJAG00000007977	NOVEL	protein_coding	ENSCJAG00000007977	chromosome:C_jacchus3.2.1:18:1:47448759:1	9627524	9832881	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014929}  [Source:UniProtKB/TrEMBL;Acc:F7HUX6]
ENSCJAG00000008322	NOVEL	protein_coding	ENSCJAG00000008322	chromosome:C_jacchus3.2.1:7:1:155834243:1	50533490	50534167	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051411}  [Source:UniProtKB/TrEMBL;Acc:F7CGG1]
ENSCJAG00000004029	KNOWN_BY_PROJECTION	protein_coding	TBC1D32	chromosome:C_jacchus3.2.1:4:1:171630274:1	121136036	121356816	R	TBC1 domain family, member 32 [Source:HGNC Symbol;Acc:HGNC:21485]
ENSCJAG00000008314	KNOWN_BY_PROJECTION	protein_coding	RSG1	chromosome:C_jacchus3.2.1:7:1:155834243:1	50536868	50543977	R	REM2 and RAB-like small GTPase 1 [Source:HGNC Symbol;Acc:HGNC:28127]
ENSCJAG00000004108	NOVEL	protein_coding	ENSCJAG00000004108	chromosome:C_jacchus3.2.1:X:1:142054208:1	136713055	136717774	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007455}  [Source:UniProtKB/TrEMBL;Acc:F6TQS0]
ENSCJAG00000035182	KNOWN_BY_PROJECTION	protein_coding	MAGEA11	chromosome:C_jacchus3.2.1:X:1:142054208:1	136793072	136796660	R	melanoma antigen family A, 11 [Source:HGNC Symbol;Acc:HGNC:6798]
ENSCJAG00000004104	KNOWN_BY_PROJECTION	protein_coding	TMEM185A	chromosome:C_jacchus3.2.1:X:1:142054208:1	136803689	136807617	D	transmembrane protein 185A [Source:HGNC Symbol;Acc:HGNC:17125]
ENSCJAG00000018358	KNOWN	protein_coding	CHKB	chromosome:C_jacchus3.2.1:1:1:210400635:1	210130084	210133062	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033995}  [Source:UniProtKB/TrEMBL;Acc:F6SEV3]
ENSCJAG00000004097	KNOWN	protein_coding	HSFX2	chromosome:C_jacchus3.2.1:X:1:142054208:1	136808827	136811656	D	Heat shock transcription factor, X-linked {ECO:0000313|EMBL:JAB23473.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007442}  [Source:UniProtKB/TrEMBL;Acc:F6U160]
ENSCJAG00000004082	KNOWN	protein_coding	CXHXORF40A	chromosome:C_jacchus3.2.1:X:1:142054208:1	136859573	136867476	R	Protein CXorf40A isoform a {ECO:0000313|EMBL:JAB07696.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007429}  [Source:UniProtKB/TrEMBL;Acc:F6PHJ6]
ENSCJAG00000008276	KNOWN	protein_coding	FBXO42	chromosome:C_jacchus3.2.1:7:1:155834243:1	50555849	50652212	R	F-box only protein 42 {ECO:0000313|EMBL:JAB11003.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015320}  [Source:UniProtKB/TrEMBL;Acc:F7EA52]
ENSCJAG00000010896	NOVEL	protein_coding	ENSCJAG00000010896	chromosome:C_jacchus3.2.1:22:1:49145316:1	28721192	28746307	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020104}  [Source:UniProtKB/TrEMBL;Acc:F7GRU5]
ENSCJAG00000032803	NOVEL	protein_coding	ENSCJAG00000032803	chromosome:C_jacchus3.2.1:X:1:142054208:1	136859713	136861240	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043800}  [Source:UniProtKB/TrEMBL;Acc:F7IH51]
ENSCJAG00000018366	NOVEL	protein_coding	ENSCJAG00000018366	chromosome:C_jacchus3.2.1:1:1:210400635:1	210133189	210133841	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034001}  [Source:UniProtKB/TrEMBL;Acc:F7BUY9]
ENSCJAG00000018368	KNOWN_BY_PROJECTION	protein_coding	MAPK8IP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	210152669	210161581	D	mitogen-activated protein kinase 8 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:6883]
ENSCJAG00000004077	KNOWN_BY_PROJECTION	protein_coding	MAMLD1	chromosome:C_jacchus3.2.1:X:1:142054208:1	137310386	137449929	D	mastermind-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:2568]
ENSCJAG00000018386	KNOWN_BY_PROJECTION	protein_coding	ARSA	chromosome:C_jacchus3.2.1:1:1:210400635:1	210176966	210179835	R	arylsulfatase A [Source:HGNC Symbol;Acc:HGNC:713]
ENSCJAG00000035044	NOVEL	protein_coding	ENSCJAG00000035044	chromosome:C_jacchus3.2.1:1:1:210400635:1	210221679	210249675	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030770}  [Source:UniProtKB/TrEMBL;Acc:F6VNL1]
ENSCJAG00000017194	KNOWN_BY_PROJECTION	protein_coding	ZNF474	chromosome:C_jacchus3.2.1:2:1:204313951:1	83872135	83922729	R	zinc finger protein 474 [Source:HGNC Symbol;Acc:HGNC:23245]
ENSCJAG00000010797	KNOWN_BY_PROJECTION	protein_coding	UBA2	chromosome:C_jacchus3.2.1:22:1:49145316:1	28748881	28793675	D	ubiquitin-like modifier activating enzyme 2 [Source:HGNC Symbol;Acc:HGNC:30661]
ENSCJAG00000008232	KNOWN_BY_PROJECTION	protein_coding	SZRD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	50665699	50694027	D	SUZ RNA binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30232]
ENSCJAG00000017181	KNOWN_BY_PROJECTION	protein_coding	LOX	chromosome:C_jacchus3.2.1:2:1:204313951:1	83975302	83990138	D	lysyl oxidase [Source:HGNC Symbol;Acc:HGNC:6664]
ENSCJAG00000018406	KNOWN	protein_coding	SHANK3	chromosome:C_jacchus3.2.1:1:1:210400635:1	210265775	210279847	D	Callithrix jacchus SH3 and multiple ankyrin repeat domains 3 (SHANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001267763]
ENSCJAG00000018409	KNOWN_BY_PROJECTION	protein_coding	ACR	chromosome:C_jacchus3.2.1:1:1:210400635:1	210284992	210292041	D	acrosin [Source:HGNC Symbol;Acc:HGNC:126]
ENSCJAG00000018414	KNOWN	protein_coding	RABL2B	chromosome:C_jacchus3.2.1:1:1:210400635:1	210293722	210309077	D	Rab-like protein 2B isoform 2 {ECO:0000313|EMBL:JAB26095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034142}  [Source:UniProtKB/TrEMBL;Acc:F6X0U5]
ENSCJAG00000018583	KNOWN_BY_PROJECTION	protein_coding	OTX2	chromosome:C_jacchus3.2.1:10:1:132174527:1	81645525	81649230	R	orthodenticle homeobox 2 [Source:HGNC Symbol;Acc:HGNC:8522]
ENSCJAG00000004040	KNOWN	protein_coding	MTM1	chromosome:C_jacchus3.2.1:X:1:142054208:1	137501956	137625616	D	Myotubularin {ECO:0000313|EMBL:JAB09934.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019244}  [Source:UniProtKB/TrEMBL;Acc:F6TRI1]
ENSCJAG00000008196	KNOWN_BY_PROJECTION	protein_coding	SPATA21	chromosome:C_jacchus3.2.1:7:1:155834243:1	50694673	50742419	R	spermatogenesis associated 21 [Source:HGNC Symbol;Acc:HGNC:28026]
ENSCJAG00000018592	KNOWN	protein_coding	EXOC5	chromosome:C_jacchus3.2.1:10:1:132174527:1	82036049	82106967	R	Exocyst complex component 5 {ECO:0000313|EMBL:JAB10655.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034569}  [Source:UniProtKB/TrEMBL;Acc:F7I3U0]
ENSCJAG00000013587	KNOWN	protein_coding	PRPSAP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	125577401	125620297	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025026}  [Source:UniProtKB/TrEMBL;Acc:F7AJ52]
ENSCJAG00000017177	NOVEL	protein_coding	ENSCJAG00000017177	chromosome:C_jacchus3.2.1:2:1:204313951:1	84026151	84098040	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031572}  [Source:UniProtKB/TrEMBL;Acc:F7IRQ5]
ENSCJAG00000017171	KNOWN_BY_PROJECTION	protein_coding	FTMT	chromosome:C_jacchus3.2.1:2:1:204313951:1	84226416	84227486	R	ferritin mitochondrial [Source:HGNC Symbol;Acc:HGNC:17345]
ENSCJAG00000017168	KNOWN_BY_PROJECTION	protein_coding	PRR16	chromosome:C_jacchus3.2.1:2:1:204313951:1	85599000	85682379	R	proline rich 16 [Source:HGNC Symbol;Acc:HGNC:29654]
ENSCJAG00000013579	NOVEL	protein_coding	ENSCJAG00000013579	chromosome:C_jacchus3.2.1:5:1:159171411:1	125659896	125662896	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024979}  [Source:UniProtKB/TrEMBL;Acc:F6QIP3]
ENSCJAG00000008146	KNOWN	protein_coding	NECAP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	50746712	50765601	D	Adaptin ear-binding coat-associated protein 2 isoform 1 {ECO:0000313|EMBL:JAB01801.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015132}  [Source:UniProtKB/TrEMBL;Acc:F7DFK6]
ENSCJAG00000010790	KNOWN_BY_PROJECTION	protein_coding	WTIP	chromosome:C_jacchus3.2.1:22:1:49145316:1	28808152	28829883	D	Wilms tumor 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:20964]
ENSCJAG00000003991	KNOWN	protein_coding	MTMR1	chromosome:C_jacchus3.2.1:X:1:142054208:1	137652115	137744996	D	Myotubularin-related protein 1 {ECO:0000313|EMBL:JAB39960.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046752}  [Source:UniProtKB/TrEMBL;Acc:F7I3L6]
ENSCJAG00000013570	KNOWN_BY_PROJECTION	protein_coding	UBE2O	chromosome:C_jacchus3.2.1:5:1:159171411:1	125664693	125731119	R	ubiquitin-conjugating enzyme E2O [Source:HGNC Symbol;Acc:HGNC:29554]
ENSCJAG00000010784	NOVEL	protein_coding	ENSCJAG00000010784	chromosome:C_jacchus3.2.1:22:1:49145316:1	28840982	28843775	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019873}  [Source:UniProtKB/TrEMBL;Acc:F7BT73]
ENSCJAG00000034572	KNOWN_BY_PROJECTION	protein_coding	MROH5	chromosome:C_jacchus3.2.1:5:1:159171411:1	29796	47216	D	maestro heat-like repeat family member 5 [Source:HGNC Symbol;Acc:HGNC:42976]
ENSCJAG00000001173	NOVEL	pseudogene	ENSCJAG00000001173	chromosome:C_jacchus3.2.1:5:1:159171411:1	92320	92674	R	<no descrition>
ENSCJAG00000001178	KNOWN_BY_PROJECTION	protein_coding	RBL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	92460	185954	D	retinoblastoma-like 1 [Source:HGNC Symbol;Acc:HGNC:9893]
ENSCJAG00000035239	NOVEL	protein_coding	ENSCJAG00000035239	chromosome:C_jacchus3.2.1:22:1:49145316:1	28855013	28890743	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044631}  [Source:UniProtKB/TrEMBL;Acc:F7DI26]
ENSCJAG00000004018	KNOWN	protein_coding	GJA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	121465719	121479862	D	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F6S7E5]
ENSCJAG00000001230	KNOWN_BY_PROJECTION	protein_coding	SAMHD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	213546	277079	D	SAM domain and HD domain 1 [Source:HGNC Symbol;Acc:HGNC:15925]
ENSCJAG00000017157	KNOWN_BY_PROJECTION	protein_coding	FAM170A	chromosome:C_jacchus3.2.1:2:1:204313951:1	86817587	86823353	R	family with sequence similarity 170, member A [Source:HGNC Symbol;Acc:HGNC:27963]
ENSCJAG00000013500	KNOWN	protein_coding	ST6GALNAC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	125671512	125866988	R	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 {ECO:0000313|EMBL:JAB10658.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050136}  [Source:UniProtKB/TrEMBL;Acc:F7H4E4]
ENSCJAG00000022504	NOVEL	protein_coding	ENSCJAG00000022504	chromosome:C_jacchus3.2.1:4:1:171630274:1	122117192	122150294	D	Pyruvate kinase {ECO:0000256|RuleBase:RU000504}  [Source:UniProtKB/TrEMBL;Acc:F6Q907]
ENSCJAG00000022360	NOVEL	protein_coding	ENSCJAG00000022360	chromosome:C_jacchus3.2.1:22:1:49145316:1	28921337	28922301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040989}  [Source:UniProtKB/TrEMBL;Acc:F7IT19]
ENSCJAG00000013563	KNOWN_BY_PROJECTION	protein_coding	AANAT	chromosome:C_jacchus3.2.1:5:1:159171411:1	125731106	125753234	D	aralkylamine N-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:19]
ENSCJAG00000003956	KNOWN_BY_PROJECTION	protein_coding	HSF2	chromosome:C_jacchus3.2.1:4:1:171630274:1	122488952	122524771	D	heat shock transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:5225]
ENSCJAG00000008057	KNOWN	protein_coding	CROCC	chromosome:C_jacchus3.2.1:7:1:155834243:1	50786501	50842344	D	Rootletin {ECO:0000313|EMBL:JAB21660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015030}  [Source:UniProtKB/TrEMBL;Acc:F7G7B4]
ENSCJAG00000013527	KNOWN_BY_PROJECTION	protein_coding	RHBDF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	125753986	125770857	R	rhomboid 5 homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:20788]
ENSCJAG00000001264	KNOWN_BY_PROJECTION	protein_coding	TLDC2	chromosome:C_jacchus3.2.1:5:1:159171411:1	275202	293350	R	TBC/LysM-associated domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16112]
ENSCJAG00000008038	KNOWN_BY_PROJECTION	protein_coding	MFAP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	50843953	50847697	R	microfibrillar-associated protein 2 [Source:HGNC Symbol;Acc:HGNC:7033]
ENSCJAG00000013520	KNOWN_BY_PROJECTION	protein_coding	CYGB	chromosome:C_jacchus3.2.1:5:1:159171411:1	125806402	125809454	R	cytoglobin [Source:HGNC Symbol;Acc:HGNC:16505]
ENSCJAG00000017062	KNOWN	protein_coding	HSD17B4	chromosome:C_jacchus3.2.1:2:1:204313951:1	86931402	87030123	R	Peroxisomal multifunctional enzyme type 2 isoform 2 {ECO:0000313|EMBL:JAB03860.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031521}  [Source:UniProtKB/TrEMBL;Acc:F7HYJ0]
ENSCJAG00000013513	KNOWN	protein_coding	PRCD	chromosome:C_jacchus3.2.1:5:1:159171411:1	125818644	125827520	D	Progressive rod-cone degeneration protein {ECO:0000313|EMBL:JAB02921.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024852}  [Source:UniProtKB/TrEMBL;Acc:F6TKS5]
ENSCJAG00000013495	KNOWN_BY_PROJECTION	protein_coding	ST6GALNAC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	125891283	125918497	R	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23614]
ENSCJAG00000035437	KNOWN_BY_PROJECTION	protein_coding	PTMA	chromosome:C_jacchus3.2.1:5:1:159171411:1	125924950	125925262	R	prothymosin, alpha [Source:HGNC Symbol;Acc:HGNC:9623]
ENSCJAG00000013485	KNOWN_BY_PROJECTION	protein_coding	MXRA7	chromosome:C_jacchus3.2.1:5:1:159171411:1	125962432	125972246	R	matrix-remodelling associated 7 [Source:HGNC Symbol;Acc:HGNC:7541]
ENSCJAG00000001273	KNOWN_BY_PROJECTION	protein_coding	SOGA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	310219	405330	D	suppressor of glucose, autophagy associated 1 [Source:HGNC Symbol;Acc:HGNC:16111]
ENSCJAG00000013442	KNOWN	protein_coding	JMJD6	chromosome:C_jacchus3.2.1:5:1:159171411:1	125994708	126010849	R	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform 1 {ECO:0000313|EMBL:JAB28476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024774}  [Source:UniProtKB/TrEMBL;Acc:F6QW67]
ENSCJAG00000010702	KNOWN	protein_coding	GRAMD1A	chromosome:C_jacchus3.2.1:22:1:49145316:1	28971971	29003708	D	GRAM domain-containing protein 1A isoform 1 {ECO:0000313|EMBL:JAB22303.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019765}  [Source:UniProtKB/TrEMBL;Acc:F6WX33]
ENSCJAG00000035507	KNOWN_BY_PROJECTION	protein_coding	YY1AP1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9642823	9671606	R	YY1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:30935]
ENSCJAG00000013434	KNOWN	protein_coding	METTL23	chromosome:C_jacchus3.2.1:5:1:159171411:1	126010914	126018507	D	Methyltransferase-like protein 23 isoform 1 {ECO:0000313|EMBL:JAB18233.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024676}  [Source:UniProtKB/TrEMBL;Acc:F6TLR1]
ENSCJAG00000004036	NOVEL	protein_coding	ENSCJAG00000004036	chromosome:C_jacchus3.2.1:X:1:142054208:1	137735571	137737964	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007326}  [Source:UniProtKB/TrEMBL;Acc:F6S6R9]
ENSCJAG00000007970	KNOWN_BY_PROJECTION	protein_coding	ATP13A2	chromosome:C_jacchus3.2.1:7:1:155834243:1	50857766	50883735	R	ATPase type 13A2 [Source:HGNC Symbol;Acc:HGNC:30213]
ENSCJAG00000003949	KNOWN_BY_PROJECTION	protein_coding	CD99L2	chromosome:C_jacchus3.2.1:X:1:142054208:1	137748452	137893274	R	CD99 molecule-like 2 [Source:HGNC Symbol;Acc:HGNC:18237]
ENSCJAG00000018618	NOVEL	pseudogene	ENSCJAG00000018618	chromosome:C_jacchus3.2.1:10:1:132174527:1	82092422	82092819	D	<no descrition>
ENSCJAG00000018620	KNOWN_BY_PROJECTION	protein_coding	AP5M1	chromosome:C_jacchus3.2.1:10:1:132174527:1	82107354	82128531	D	adaptor-related protein complex 5, mu 1 subunit [Source:HGNC Symbol;Acc:HGNC:20192]
ENSCJAG00000018629	KNOWN_BY_PROJECTION	protein_coding	NAA30	chromosome:C_jacchus3.2.1:10:1:132174527:1	82234214	82255186	D	N(alpha)-acetyltransferase 30, NatC catalytic subunit [Source:HGNC Symbol;Acc:HGNC:19844]
ENSCJAG00000003940	KNOWN	protein_coding	SERINC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	122536804	122563953	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007165}  [Source:UniProtKB/TrEMBL;Acc:F6RB69]
ENSCJAG00000003936	KNOWN_BY_PROJECTION	protein_coding	HMGB3	chromosome:C_jacchus3.2.1:X:1:142054208:1	137964672	137972847	D	high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]
ENSCJAG00000003928	KNOWN_BY_PROJECTION	protein_coding	GPR50	chromosome:C_jacchus3.2.1:X:1:142054208:1	138159665	138164920	D	G protein-coupled receptor 50 [Source:HGNC Symbol;Acc:HGNC:4506]
ENSCJAG00000003916	KNOWN	protein_coding	ENSCJAG00000003916	chromosome:C_jacchus3.2.1:X:1:142054208:1	138371156	138381301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007124}; Vacuolar ATPase assembly integral membrane protein VMA21 {ECO:0000313|EMBL:JAB02277.1}  [Source:UniProtKB/TrEMBL;Acc:F6S8Q8]
ENSCJAG00000003930	KNOWN_BY_PROJECTION	protein_coding	PKIB	chromosome:C_jacchus3.2.1:4:1:171630274:1	122564036	122847949	D	protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:HGNC Symbol;Acc:HGNC:9018]
ENSCJAG00000035337	NOVEL	pseudogene	ENSCJAG00000035337	chromosome:C_jacchus3.2.1:X:1:142054208:1	138461549	138461823	D	<no descrition>
ENSCJAG00000008125	KNOWN	protein_coding	DAP3	chromosome:C_jacchus3.2.1:18:1:47448759:1	9671661	9711714	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045728}  [Source:UniProtKB/TrEMBL;Acc:F6T3T5]
ENSCJAG00000032926	NOVEL	protein_coding	ENSCJAG00000032926	chromosome:C_jacchus3.2.1:X:1:142054208:1	138488598	138489715	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048225}  [Source:UniProtKB/TrEMBL;Acc:F7EXU0]
ENSCJAG00000003903	KNOWN_BY_PROJECTION	protein_coding	PASD1	chromosome:C_jacchus3.2.1:X:1:142054208:1	138560008	138610993	D	PAS domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20686]
ENSCJAG00000036273	KNOWN	protein_coding	SCN1B	chromosome:C_jacchus3.2.1:22:1:49145316:1	29008230	29018768	D	Sodium channel subunit beta-1 isoform a {ECO:0000313|EMBL:JAB04421.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019701}  [Source:UniProtKB/TrEMBL;Acc:F6Y804]
ENSCJAG00000017059	KNOWN_BY_PROJECTION	protein_coding	TNFAIP8	chromosome:C_jacchus3.2.1:2:1:204313951:1	87077053	87141451	R	tumor necrosis factor, alpha-induced protein 8 [Source:HGNC Symbol;Acc:HGNC:17260]
ENSCJAG00000018649	NOVEL	protein_coding	ENSCJAG00000018649	chromosome:C_jacchus3.2.1:10:1:132174527:1	82283970	82284466	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034633}  [Source:UniProtKB/TrEMBL;Acc:F7HMZ9]
ENSCJAG00000018651	KNOWN_BY_PROJECTION	protein_coding	C14orf105	chromosome:C_jacchus3.2.1:10:1:132174527:1	82298377	82330388	R	chromosome 14 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:20189]
ENSCJAG00000010660	KNOWN_BY_PROJECTION	protein_coding	HPN	chromosome:C_jacchus3.2.1:22:1:49145316:1	29029155	29044586	D	hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
ENSCJAG00000001308	KNOWN_BY_PROJECTION	protein_coding	DSN1	chromosome:C_jacchus3.2.1:5:1:159171411:1	410035	498985	D	DSN1, MIS12 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16165]
ENSCJAG00000003918	KNOWN	protein_coding	FABP7	chromosome:C_jacchus3.2.1:4:1:171630274:1	122890658	122895979	D	Fatty acid-binding protein, brain {ECO:0000313|EMBL:JAB25524.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007133}  [Source:UniProtKB/TrEMBL;Acc:F6RYX3]
ENSCJAG00000016870	KNOWN_BY_PROJECTION	protein_coding	DMXL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	87242132	87433348	R	Dmx-like 1 [Source:HGNC Symbol;Acc:HGNC:2937]
ENSCJAG00000010654	NOVEL	protein_coding	ENSCJAG00000010654	chromosome:C_jacchus3.2.1:22:1:49145316:1	29058159	29058812	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045474}  [Source:UniProtKB/TrEMBL;Acc:F6Q3X6]
ENSCJAG00000010643	KNOWN_BY_PROJECTION	protein_coding	FXYD3	chromosome:C_jacchus3.2.1:22:1:49145316:1	29065614	29072968	D	FXYD domain containing ion transport regulator 3 [Source:HGNC Symbol;Acc:HGNC:4027]
ENSCJAG00000013412	KNOWN	protein_coding	SRSF2	chromosome:C_jacchus3.2.1:5:1:159171411:1	126018691	126021930	R	Serine/arginine-rich splicing factor 2 {ECO:0000313|EMBL:JAB11147.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046899}  [Source:UniProtKB/TrEMBL;Acc:F7IJZ7]
ENSCJAG00000010603	KNOWN	protein_coding	LGI4	chromosome:C_jacchus3.2.1:22:1:49145316:1	29074701	29085179	R	Leucine-rich repeat LGI family member 4 {ECO:0000313|EMBL:JAB04784.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019594}  [Source:UniProtKB/TrEMBL;Acc:F6Q122]
ENSCJAG00000018660	KNOWN	protein_coding	SLC35F4	chromosome:C_jacchus3.2.1:10:1:132174527:1	82402902	82454957	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034667}  [Source:UniProtKB/TrEMBL;Acc:F7IPT4]
ENSCJAG00000003898	KNOWN	protein_coding	SMPDL3A	chromosome:C_jacchus3.2.1:4:1:171630274:1	122900994	122962113	D	Acid sphingomyelinase-like phosphodiesterase 3a {ECO:0000313|EMBL:JAB04011.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046027}  [Source:UniProtKB/TrEMBL;Acc:F7AAZ3]
ENSCJAG00000010597	KNOWN_BY_PROJECTION	protein_coding	FXYD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29092004	29094398	D	FXYD domain containing ion transport regulator 1 [Source:HGNC Symbol;Acc:HGNC:4025]
ENSCJAG00000003895	KNOWN	protein_coding	PRRG3	chromosome:C_jacchus3.2.1:X:1:142054208:1	138635344	138638946	D	Transmembrane gamma-carboxyglutamic acid protein 3 {ECO:0000313|EMBL:JAB18453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007083}  [Source:UniProtKB/TrEMBL;Acc:F6TGY0]
ENSCJAG00000003890	KNOWN_BY_PROJECTION	protein_coding	FATE1	chromosome:C_jacchus3.2.1:X:1:142054208:1	138653432	138659600	D	fetal and adult testis expressed 1 [Source:HGNC Symbol;Acc:HGNC:24683]
ENSCJAG00000003872	KNOWN_BY_PROJECTION	protein_coding	CNGA2	chromosome:C_jacchus3.2.1:X:1:142054208:1	138670747	138682858	D	cyclic nucleotide gated channel alpha 2 [Source:HGNC Symbol;Acc:HGNC:2149]
ENSCJAG00000013361	KNOWN_BY_PROJECTION	protein_coding	MFSD11	chromosome:C_jacchus3.2.1:5:1:159171411:1	126021406	126060323	D	major facilitator superfamily domain containing 11 [Source:HGNC Symbol;Acc:HGNC:25458]
ENSCJAG00000018672	KNOWN	protein_coding	C14ORF37	chromosome:C_jacchus3.2.1:10:1:132174527:1	82862774	83166438	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045043}; Uncharacterized protein C14orf37 {ECO:0000313|EMBL:JAB22316.1}  [Source:UniProtKB/TrEMBL;Acc:F6TU45]
ENSCJAG00000003862	KNOWN_BY_PROJECTION	protein_coding	MAGEA4	chromosome:C_jacchus3.2.1:X:1:142054208:1	138850189	138864050	D	melanoma antigen family A, 4 [Source:HGNC Symbol;Acc:HGNC:6802]
ENSCJAG00000001323	KNOWN	protein_coding	NDRG3	chromosome:C_jacchus3.2.1:5:1:159171411:1	444099	533477	D	Protein NDRG3 isoform a {ECO:0000313|EMBL:JAB04758.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002340}  [Source:UniProtKB/TrEMBL;Acc:F7IIV9]
ENSCJAG00000003848	KNOWN_BY_PROJECTION	protein_coding	GABRE	chromosome:C_jacchus3.2.1:X:1:142054208:1	138898464	138916326	R	gamma-aminobutyric acid (GABA) A receptor, epsilon [Source:HGNC Symbol;Acc:HGNC:4085]
ENSCJAG00000013327	KNOWN_BY_PROJECTION	protein_coding	MGAT5B	chromosome:C_jacchus3.2.1:5:1:159171411:1	126163881	126217113	D	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B [Source:HGNC Symbol;Acc:HGNC:24140]
ENSCJAG00000003847	NOVEL	protein_coding	ENSCJAG00000003847	chromosome:C_jacchus3.2.1:X:1:142054208:1	139047659	139048546	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006981}  [Source:UniProtKB/TrEMBL;Acc:F7GV71]
ENSCJAG00000003841	KNOWN_BY_PROJECTION	protein_coding	MAGEA10	chromosome:C_jacchus3.2.1:X:1:142054208:1	139064839	139068891	R	melanoma antigen family A, 10 [Source:HGNC Symbol;Acc:HGNC:6797]
ENSCJAG00000007969	KNOWN	protein_coding	SYT11	chromosome:C_jacchus3.2.1:18:1:47448759:1	9833006	9860775	D	Synaptotagmin-11 {ECO:0000313|EMBL:JAB33215.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014735}  [Source:UniProtKB/TrEMBL;Acc:F7IN98]
ENSCJAG00000034520	NOVEL	pseudogene	ENSCJAG00000034520	chromosome:C_jacchus3.2.1:18:1:47448759:1	9864792	9865135	R	<no descrition>
ENSCJAG00000003815	KNOWN_BY_PROJECTION	protein_coding	GABRA3	chromosome:C_jacchus3.2.1:X:1:142054208:1	139116297	139369313	R	gamma-aminobutyric acid (GABA) A receptor, alpha 3 [Source:HGNC Symbol;Acc:HGNC:4077]
ENSCJAG00000010126	KNOWN_BY_PROJECTION	protein_coding	KMT2B	chromosome:C_jacchus3.2.1:22:1:49145316:1	29095327	29555344	D	lysine (K)-specific methyltransferase 2B [Source:HGNC Symbol;Acc:HGNC:15840]
ENSCJAG00000013261	NOVEL	protein_coding	ENSCJAG00000013261	chromosome:C_jacchus3.2.1:5:1:159171411:1	126423966	126488416	D	<no descrition>
ENSCJAG00000007927	KNOWN_BY_PROJECTION	protein_coding	SDHB	chromosome:C_jacchus3.2.1:7:1:155834243:1	50893021	50933058	R	succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:HGNC Symbol;Acc:HGNC:10681]
ENSCJAG00000003787	KNOWN_BY_PROJECTION	protein_coding	GABRQ	chromosome:C_jacchus3.2.1:X:1:142054208:1	139483261	139497837	D	gamma-aminobutyric acid (GABA) A receptor, theta [Source:HGNC Symbol;Acc:HGNC:14454]
ENSCJAG00000017057	NOVEL	protein_coding	ENSCJAG00000017057	chromosome:C_jacchus3.2.1:2:1:204313951:1	87273581	87274455	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031345}  [Source:UniProtKB/TrEMBL;Acc:F7HST3]
ENSCJAG00000017053	NOVEL	protein_coding	ENSCJAG00000017053	chromosome:C_jacchus3.2.1:2:1:204313951:1	87423716	87424246	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031343}  [Source:UniProtKB/TrEMBL;Acc:F7HSU1]
ENSCJAG00000033515	NOVEL	protein_coding	ENSCJAG00000033515	chromosome:C_jacchus3.2.1:4:1:171630274:1	122902025	122939028	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044825}  [Source:UniProtKB/TrEMBL;Acc:F7DY39]
ENSCJAG00000016851	KNOWN_BY_PROJECTION	protein_coding	DTWD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	87535237	87717632	D	DTW domain containing 2 [Source:HGNC Symbol;Acc:HGNC:19334]
ENSCJAG00000003876	KNOWN	protein_coding	CLVS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	123132829	123205300	D	Clavesin-2 {ECO:0000313|EMBL:JAB21282.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007070}  [Source:UniProtKB/TrEMBL;Acc:F6TT00]
ENSCJAG00000034965	NOVEL	pseudogene	ENSCJAG00000034965	chromosome:C_jacchus3.2.1:2:1:204313951:1	88897901	88898313	D	<no descrition>
ENSCJAG00000016850	NOVEL	pseudogene	ENSCJAG00000016850	chromosome:C_jacchus3.2.1:2:1:204313951:1	89039342	89039562	R	<no descrition>
ENSCJAG00000033178	KNOWN_BY_PROJECTION	protein_coding	PHF5A	chromosome:C_jacchus3.2.1:2:1:204313951:1	89455665	89455970	D	PHD finger protein 5A [Source:HGNC Symbol;Acc:HGNC:18000]
ENSCJAG00000007941	KNOWN_BY_PROJECTION	protein_coding	RIT1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9883202	9892653	R	Ras-like without CAAX 1 [Source:HGNC Symbol;Acc:HGNC:10023]
ENSCJAG00000016846	NOVEL	pseudogene	ENSCJAG00000016846	chromosome:C_jacchus3.2.1:2:1:204313951:1	89738358	89739197	D	<no descrition>
ENSCJAG00000031195	NOVEL	protein_coding	ENSCJAG00000031195	chromosome:C_jacchus3.2.1:2:1:204313951:1	89822929	89823651	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027991}  [Source:UniProtKB/TrEMBL;Acc:F7H953]
ENSCJAG00000016842	NOVEL	pseudogene	ENSCJAG00000016842	chromosome:C_jacchus3.2.1:2:1:204313951:1	89922594	89923133	D	<no descrition>
ENSCJAG00000016830	NOVEL	protein_coding	ENSCJAG00000016830	chromosome:C_jacchus3.2.1:2:1:204313951:1	90200710	90224839	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030980}  [Source:UniProtKB/TrEMBL;Acc:F6V2F1]
ENSCJAG00000016826	NOVEL	pseudogene	ENSCJAG00000016826	chromosome:C_jacchus3.2.1:2:1:204313951:1	90259659	90261711	D	<no descrition>
ENSCJAG00000018680	KNOWN	protein_coding	ACTR10	chromosome:C_jacchus3.2.1:10:1:132174527:1	83070573	83108055	D	Actin-related protein 10 {ECO:0000313|EMBL:JAB05535.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034786}  [Source:UniProtKB/TrEMBL;Acc:F7I3K4]
ENSCJAG00000016820	KNOWN	protein_coding	COMMD10	chromosome:C_jacchus3.2.1:2:1:204313951:1	90412887	90621168	R	COMM domain-containing protein 10 {ECO:0000313|EMBL:JAB10739.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030954}  [Source:UniProtKB/TrEMBL;Acc:F6W770]
ENSCJAG00000007838	KNOWN_BY_PROJECTION	protein_coding	PADI2	chromosome:C_jacchus3.2.1:7:1:155834243:1	50944938	50999608	R	peptidyl arginine deiminase, type II [Source:HGNC Symbol;Acc:HGNC:18341]
ENSCJAG00000033254	KNOWN_BY_PROJECTION	protein_coding	CSAG1	chromosome:C_jacchus3.2.1:X:1:142054208:1	139528715	139542362	D	chondrosarcoma associated gene 1 [Source:HGNC Symbol;Acc:HGNC:24294]
ENSCJAG00000016338	NOVEL	protein_coding	ENSCJAG00000016338	chromosome:C_jacchus3.2.1:X:1:142054208:1	139565002	139567867	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030077}  [Source:UniProtKB/TrEMBL;Acc:F6RHT8]
ENSCJAG00000007881	KNOWN_BY_PROJECTION	protein_coding	KIAA0907	chromosome:C_jacchus3.2.1:18:1:47448759:1	9895574	9919950	R	KIAA0907 [Source:HGNC Symbol;Acc:HGNC:29145]
ENSCJAG00000016347	KNOWN	protein_coding	NSDHL	chromosome:C_jacchus3.2.1:X:1:142054208:1	139568082	139596844	D	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating {ECO:0000313|EMBL:JAB08396.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030100}  [Source:UniProtKB/TrEMBL;Acc:F6WCX6]
ENSCJAG00000031693	NOVEL	protein_coding	ENSCJAG00000031693	chromosome:C_jacchus3.2.1:2:1:204313951:1	90649365	90659045	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044476}  [Source:UniProtKB/TrEMBL;Acc:F7HBR7]
ENSCJAG00000010596	NOVEL	pseudogene	ENSCJAG00000010596	chromosome:C_jacchus3.2.1:22:1:49145316:1	29102176	29102577	D	<no descrition>
ENSCJAG00000010568	KNOWN	protein_coding	FXYD5	chromosome:C_jacchus3.2.1:22:1:49145316:1	29106251	29121465	D	FXYD domain-containing ion transport regulator 5 {ECO:0000313|EMBL:JAB02821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019511}  [Source:UniProtKB/TrEMBL;Acc:F6RV87]
ENSCJAG00000010566	KNOWN_BY_PROJECTION	protein_coding	FAM187B	chromosome:C_jacchus3.2.1:22:1:49145316:1	29133271	29137486	R	family with sequence similarity 187, member B [Source:HGNC Symbol;Acc:HGNC:26366]
ENSCJAG00000001339	KNOWN_BY_PROJECTION	protein_coding	SLA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	543189	574193	D	Src-like-adaptor 2 [Source:HGNC Symbol;Acc:HGNC:17329]
ENSCJAG00000010544	KNOWN_BY_PROJECTION	protein_coding	LSR	chromosome:C_jacchus3.2.1:22:1:49145316:1	29145731	29166385	D	lipolysis stimulated lipoprotein receptor [Source:HGNC Symbol;Acc:HGNC:29572]
ENSCJAG00000001344	KNOWN	protein_coding	C20ORF24	chromosome:C_jacchus3.2.1:5:1:159171411:1	573961	584238	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002379}; Uncharacterized protein C20orf24 isoform a {ECO:0000313|EMBL:JAB08163.1}  [Source:UniProtKB/TrEMBL;Acc:F7IE30]
ENSCJAG00000007822	NOVEL	pseudogene	ENSCJAG00000007822	chromosome:C_jacchus3.2.1:7:1:155834243:1	51063695	51064904	D	<no descrition>
ENSCJAG00000010451	KNOWN_BY_PROJECTION	protein_coding	USF2	chromosome:C_jacchus3.2.1:22:1:49145316:1	29169534	29178789	D	upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594]
ENSCJAG00000016789	NOVEL	protein_coding	ENSCJAG00000016789	chromosome:C_jacchus3.2.1:2:1:204313951:1	90685086	90754656	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030889}  [Source:UniProtKB/TrEMBL;Acc:F6ZLX9]
ENSCJAG00000003869	NOVEL	protein_coding	ENSCJAG00000003869	chromosome:C_jacchus3.2.1:4:1:171630274:1	123402698	123404596	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007036}  [Source:UniProtKB/TrEMBL;Acc:F6PU62]
ENSCJAG00000007777	KNOWN_BY_PROJECTION	protein_coding	PADI1	chromosome:C_jacchus3.2.1:7:1:155834243:1	51082944	51133028	D	peptidyl arginine deiminase, type I [Source:HGNC Symbol;Acc:HGNC:18367]
ENSCJAG00000013203	KNOWN	protein_coding	SEPT9	chromosome:C_jacchus3.2.1:5:1:159171411:1	126543732	126762443	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004242}  [Source:UniProtKB/TrEMBL;Acc:F6Y617]
ENSCJAG00000003835	KNOWN_BY_PROJECTION	protein_coding	TRDN	chromosome:C_jacchus3.2.1:4:1:171630274:1	123644049	123791701	R	triadin [Source:HGNC Symbol;Acc:HGNC:12261]
ENSCJAG00000034582	KNOWN_BY_PROJECTION	protein_coding	NKAIN2	chromosome:C_jacchus3.2.1:4:1:171630274:1	124470945	125052614	D	Na+/K+ transporting ATPase interacting 2 [Source:HGNC Symbol;Acc:HGNC:16443]
ENSCJAG00000010438	KNOWN	protein_coding	HAMP	chromosome:C_jacchus3.2.1:22:1:49145316:1	29182105	29184751	D	Hepcidin preproprotein {ECO:0000313|EMBL:JAB07182.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019255}  [Source:UniProtKB/TrEMBL;Acc:F6TFL3]
ENSCJAG00000007878	KNOWN_BY_PROJECTION	protein_coding	RXFP4	chromosome:C_jacchus3.2.1:18:1:47448759:1	9928896	9929738	D	relaxin/insulin-like family peptide receptor 4 [Source:HGNC Symbol;Acc:HGNC:14666]
ENSCJAG00000001354	KNOWN	protein_coding	ENSCJAG00000001354	chromosome:C_jacchus3.2.1:5:1:159171411:1	601162	627474	R	Homeobox protein TGIF2 {ECO:0000313|EMBL:JAB10450.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002384}  [Source:UniProtKB/TrEMBL;Acc:F7IBT3]
ENSCJAG00000003808	KNOWN_BY_PROJECTION	protein_coding	RNF217	chromosome:C_jacchus3.2.1:4:1:171630274:1	125192607	125317312	D	ring finger protein 217 [Source:HGNC Symbol;Acc:HGNC:21487]
ENSCJAG00000012890	KNOWN	protein_coding	MYL9	chromosome:C_jacchus3.2.1:5:1:159171411:1	657758	661774	R	Myosin regulatory light polypeptide 9 isoform a {ECO:0000313|EMBL:JAB12962.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002390}  [Source:UniProtKB/TrEMBL;Acc:F7IBQ4]
ENSCJAG00000010380	KNOWN_BY_PROJECTION	protein_coding	CD22	chromosome:C_jacchus3.2.1:22:1:49145316:1	29211002	29228466	D	CD22 molecule [Source:HGNC Symbol;Acc:HGNC:1643]
ENSCJAG00000007846	KNOWN_BY_PROJECTION	protein_coding	ARHGEF2	chromosome:C_jacchus3.2.1:18:1:47448759:1	9934419	9963765	R	Rho/Rac guanine nucleotide exchange factor (GEF) 2 [Source:HGNC Symbol;Acc:HGNC:682]
ENSCJAG00000001360	KNOWN	protein_coding	DLGAP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	678705	788892	R	Disks large-associated protein 4 isoform b {ECO:0000313|EMBL:JAB11042.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002440}  [Source:UniProtKB/TrEMBL;Acc:F7I007]
ENSCJAG00000016363	KNOWN_BY_PROJECTION	protein_coding	ZNF185	chromosome:C_jacchus3.2.1:X:1:142054208:1	139640668	139703130	D	zinc finger protein 185 (LIM domain) [Source:HGNC Symbol;Acc:HGNC:12976]
ENSCJAG00000003786	KNOWN	protein_coding	TPD52L1	chromosome:C_jacchus3.2.1:4:1:171630274:1	125374660	125483414	D	Tumor protein D53 isoform 4 {ECO:0000313|EMBL:JAB07070.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006899}  [Source:UniProtKB/TrEMBL;Acc:F7HG13]
ENSCJAG00000010377	NOVEL	protein_coding	ENSCJAG00000010377	chromosome:C_jacchus3.2.1:22:1:49145316:1	29236755	29249995	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048998}  [Source:UniProtKB/TrEMBL;Acc:F6PKR3]
ENSCJAG00000017423	KNOWN_BY_PROJECTION	protein_coding	AAR2	chromosome:C_jacchus3.2.1:5:1:159171411:1	948507	963772	R	AAR2 splicing factor homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:15886]
ENSCJAG00000016373	KNOWN_BY_PROJECTION	protein_coding	PNMA5	chromosome:C_jacchus3.2.1:X:1:142054208:1	139722024	139724324	R	paraneoplastic Ma antigen family member 5 [Source:HGNC Symbol;Acc:HGNC:18743]
ENSCJAG00000003773	KNOWN	protein_coding	HDDC2	chromosome:C_jacchus3.2.1:4:1:171630274:1	125497273	125530606	R	HD domain-containing protein 2 {ECO:0000313|EMBL:JAB20663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006841}  [Source:UniProtKB/TrEMBL;Acc:F7CYC0]
ENSCJAG00000033951	KNOWN_BY_PROJECTION	protein_coding	PADI3	chromosome:C_jacchus3.2.1:7:1:155834243:1	51135988	51172999	D	peptidyl arginine deiminase, type III [Source:HGNC Symbol;Acc:HGNC:18337]
ENSCJAG00000022542	KNOWN	protein_coding	PNMA3	chromosome:C_jacchus3.2.1:X:1:142054208:1	139769820	139771760	D	Paraneoplastic antigen Ma3 {ECO:0000313|EMBL:JAB22927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041149}  [Source:UniProtKB/TrEMBL;Acc:F7DX48]
ENSCJAG00000033786	NOVEL	protein_coding	ENSCJAG00000033786	chromosome:C_jacchus3.2.1:5:1:159171411:1	127083504	127095927	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042361}  [Source:UniProtKB/TrEMBL;Acc:F6V6E1]
ENSCJAG00000019475	KNOWN_BY_PROJECTION	protein_coding	PNMA6A	chromosome:C_jacchus3.2.1:X:1:142054208:1	139776293	139856692	R	paraneoplastic Ma antigen family member 6A [Source:HGNC Symbol;Acc:HGNC:28248]
ENSCJAG00000036397	KNOWN_BY_PROJECTION	protein_coding	PADI4	chromosome:C_jacchus3.2.1:7:1:155834243:1	51205484	51257362	D	peptidyl arginine deiminase, type IV [Source:HGNC Symbol;Acc:HGNC:18368]
ENSCJAG00000016383	NOVEL	protein_coding	ENSCJAG00000016383	chromosome:C_jacchus3.2.1:X:1:142054208:1	139797683	139804673	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030140}  [Source:UniProtKB/TrEMBL;Acc:F6VT92]
ENSCJAG00000019468	NOVEL	protein_coding	ENSCJAG00000019468	chromosome:C_jacchus3.2.1:X:1:142054208:1	139879982	139884606	D	<no descrition>
ENSCJAG00000034097	KNOWN_BY_PROJECTION	protein_coding	KRTDAP	chromosome:C_jacchus3.2.1:22:1:49145316:1	29328168	29331287	R	keratinocyte differentiation-associated protein [Source:HGNC Symbol;Acc:HGNC:16313]
ENSCJAG00000011538	KNOWN_BY_PROJECTION	protein_coding	ZFP92	chromosome:C_jacchus3.2.1:X:1:142054208:1	139948555	139951656	D	ZFP92 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:12865]
ENSCJAG00000011515	KNOWN_BY_PROJECTION	protein_coding	TREX2	chromosome:C_jacchus3.2.1:X:1:142054208:1	139970490	139996316	R	three prime repair exonuclease 2 [Source:HGNC Symbol;Acc:HGNC:12270]
ENSCJAG00000019431	KNOWN	protein_coding	TNRC6C	chromosome:C_jacchus3.2.1:5:1:159171411:1	127264350	127362937	D	Trinucleotide repeat-containing gene 6C protein isoform 1 {ECO:0000313|EMBL:JAB22464.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036107}  [Source:UniProtKB/TrEMBL;Acc:F7E676]
ENSCJAG00000010353	KNOWN_BY_PROJECTION	protein_coding	DMKN	chromosome:C_jacchus3.2.1:22:1:49145316:1	29337689	29357111	R	dermokine [Source:HGNC Symbol;Acc:HGNC:25063]
ENSCJAG00000036194	KNOWN_BY_PROJECTION	protein_coding	HAUS7	chromosome:C_jacchus3.2.1:X:1:142054208:1	139983532	139996933	R	HAUS augmin-like complex, subunit 7 [Source:HGNC Symbol;Acc:HGNC:32979]
ENSCJAG00000007824	KNOWN	protein_coding	SSR2	chromosome:C_jacchus3.2.1:18:1:47448759:1	10009440	10024423	R	Translocon-associated protein subunit beta {ECO:0000256|PIRNR:PIRNR016400}  [Source:UniProtKB/TrEMBL;Acc:F7IL41]
ENSCJAG00000017428	KNOWN	protein_coding	EPB41L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	974420	1121373	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050979}  [Source:UniProtKB/TrEMBL;Acc:F6T026]
ENSCJAG00000003761	KNOWN	protein_coding	HEY2	chromosome:C_jacchus3.2.1:4:1:171630274:1	125948385	125960278	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006817}  [Source:UniProtKB/TrEMBL;Acc:F7DGL3]
ENSCJAG00000011493	KNOWN_BY_PROJECTION	protein_coding	BGN	chromosome:C_jacchus3.2.1:X:1:142054208:1	140018922	140031680	D	biglycan [Source:HGNC Symbol;Acc:HGNC:1044]
ENSCJAG00000007755	KNOWN_BY_PROJECTION	protein_coding	UBQLN4	chromosome:C_jacchus3.2.1:18:1:47448759:1	10047675	10065197	R	ubiquilin 4 [Source:HGNC Symbol;Acc:HGNC:1237]
ENSCJAG00000018732	KNOWN	protein_coding	PSMA3	chromosome:C_jacchus3.2.1:10:1:132174527:1	83119231	83144135	D	Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}  [Source:UniProtKB/TrEMBL;Acc:F7IS34]
ENSCJAG00000036121	NOVEL	pseudogene	ENSCJAG00000036121	chromosome:C_jacchus3.2.1:5:1:159171411:1	127360376	127361777	D	<no descrition>
ENSCJAG00000019450	NOVEL	pseudogene	ENSCJAG00000019450	chromosome:C_jacchus3.2.1:5:1:159171411:1	127364068	127364279	R	<no descrition>
ENSCJAG00000016767	KNOWN	protein_coding	AP3S1	chromosome:C_jacchus3.2.1:2:1:204313951:1	90835758	90926832	R	AP-3 complex subunit sigma-1 {ECO:0000313|EMBL:JAB02465.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030865}  [Source:UniProtKB/TrEMBL;Acc:F7A561]
ENSCJAG00000010338	KNOWN_BY_PROJECTION	protein_coding	SBSN	chromosome:C_jacchus3.2.1:22:1:49145316:1	29372273	29376272	R	suprabasin [Source:HGNC Symbol;Acc:HGNC:24950]
ENSCJAG00000019413	KNOWN_BY_PROJECTION	protein_coding	TMC6	chromosome:C_jacchus3.2.1:5:1:159171411:1	127367014	127388906	R	transmembrane channel-like 6 [Source:HGNC Symbol;Acc:HGNC:18021]
ENSCJAG00000007733	KNOWN_BY_PROJECTION	protein_coding	PADI6	chromosome:C_jacchus3.2.1:7:1:155834243:1	51265996	51303585	D	peptidyl arginine deiminase, type VI [Source:HGNC Symbol;Acc:HGNC:20449]
ENSCJAG00000010315	KNOWN_BY_PROJECTION	protein_coding	GAPDHS	chromosome:C_jacchus3.2.1:22:1:49145316:1	29380570	29391635	D	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:HGNC:24864]
ENSCJAG00000011413	KNOWN_BY_PROJECTION	protein_coding	ATP2B3	chromosome:C_jacchus3.2.1:X:1:142054208:1	140059637	140107395	D	ATPase, Ca++ transporting, plasma membrane 3 [Source:HGNC Symbol;Acc:HGNC:816]
ENSCJAG00000007706	KNOWN_BY_PROJECTION	protein_coding	RCC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	51312244	51339718	R	regulator of chromosome condensation 2 [Source:HGNC Symbol;Acc:HGNC:30297]
ENSCJAG00000010306	KNOWN	protein_coding	TMEM147	chromosome:C_jacchus3.2.1:22:1:49145316:1	29391953	29393817	D	Transmembrane protein 147 isoform 1 {ECO:0000313|EMBL:JAB10322.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018987}  [Source:UniProtKB/TrEMBL;Acc:F7GQ14]
ENSCJAG00000007739	KNOWN	protein_coding	LAMTOR2	chromosome:C_jacchus3.2.1:18:1:47448759:1	10066033	10070964	D	Ragulator complex protein LAMTOR2 isoform 2 {ECO:0000313|EMBL:JAB14054.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014353}  [Source:UniProtKB/TrEMBL;Acc:F7IE24]
ENSCJAG00000016761	KNOWN	protein_coding	ATG12	chromosome:C_jacchus3.2.1:2:1:204313951:1	90926948	90939379	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030836}  [Source:UniProtKB/TrEMBL;Acc:F7BNU4]
ENSCJAG00000033798	NOVEL	protein_coding	ENSCJAG00000033798	chromosome:C_jacchus3.2.1:7:1:155834243:1	51349358	51349849	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033413}  [Source:UniProtKB/TrEMBL;Acc:F6RMU6]
ENSCJAG00000016752	KNOWN_BY_PROJECTION	protein_coding	CDO1	chromosome:C_jacchus3.2.1:2:1:204313951:1	90947031	90958845	D	cysteine dioxygenase type 1 [Source:HGNC Symbol;Acc:HGNC:1795]
ENSCJAG00000007715	KNOWN	protein_coding	RAB25	chromosome:C_jacchus3.2.1:18:1:47448759:1	10072769	10083505	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014329}  [Source:UniProtKB/TrEMBL;Acc:F7IIU2]
ENSCJAG00000011407	KNOWN	protein_coding	ENSCJAG00000011407	chromosome:C_jacchus3.2.1:X:1:142054208:1	140115334	140137493	R	Cyclin-related protein FAM58A isoform 1 {ECO:0000313|EMBL:JAB07858.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020969}  [Source:UniProtKB/TrEMBL;Acc:F7GVF7]
ENSCJAG00000007711	KNOWN_BY_PROJECTION	protein_coding	MEX3A	chromosome:C_jacchus3.2.1:18:1:47448759:1	10090143	10093739	R	mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482]
ENSCJAG00000016745	KNOWN	protein_coding	TMED7	chromosome:C_jacchus3.2.1:2:1:204313951:1	91186923	91231991	D	Callithrix jacchus toll-like receptor adaptor molecule 2 (TICAM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001204343]
ENSCJAG00000003719	KNOWN	protein_coding	NCOA7	chromosome:C_jacchus3.2.1:4:1:171630274:1	125976053	126143881	D	Nuclear receptor coactivator 7 isoform 4 {ECO:0000313|EMBL:JAB10440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046053}  [Source:UniProtKB/TrEMBL;Acc:F6ZBL9]
ENSCJAG00000011402	KNOWN_BY_PROJECTION	protein_coding	DUSP9	chromosome:C_jacchus3.2.1:X:1:142054208:1	140173357	140183916	D	dual specificity phosphatase 9 [Source:HGNC Symbol;Acc:HGNC:3076]
ENSCJAG00000007586	KNOWN	protein_coding	ARHGEF10L	chromosome:C_jacchus3.2.1:7:1:155834243:1	51448231	51622146	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014263}  [Source:UniProtKB/TrEMBL;Acc:F7HJW8]
ENSCJAG00000034149	NOVEL	pseudogene	ENSCJAG00000034149	chromosome:C_jacchus3.2.1:X:1:142054208:1	140193489	140193899	D	<no descrition>
ENSCJAG00000034382	KNOWN_BY_PROJECTION	protein_coding	PNCK	chromosome:C_jacchus3.2.1:X:1:142054208:1	140200991	140203060	R	pregnancy up-regulated nonubiquitous CaM kinase [Source:HGNC Symbol;Acc:HGNC:13415]
ENSCJAG00000010270	KNOWN_BY_PROJECTION	protein_coding	ATP4A	chromosome:C_jacchus3.2.1:22:1:49145316:1	29396530	29410275	R	ATPase, H+/K+ exchanging, alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:819]
ENSCJAG00000011356	NOVEL	protein_coding	ENSCJAG00000011356	chromosome:C_jacchus3.2.1:X:1:142054208:1	140215438	140225167	D	Transporter {ECO:0000256|RuleBase:RU003732}  [Source:UniProtKB/TrEMBL;Acc:F7C3A6]
ENSCJAG00000017471	NOVEL	pseudogene	ENSCJAG00000017471	chromosome:C_jacchus3.2.1:5:1:159171411:1	1030986	1031347	D	<no descrition>
ENSCJAG00000010239	KNOWN_BY_PROJECTION	protein_coding	HAUS5	chromosome:C_jacchus3.2.1:22:1:49145316:1	29436295	29447737	D	HAUS augmin-like complex, subunit 5 [Source:HGNC Symbol;Acc:HGNC:29130]
ENSCJAG00000017475	KNOWN_BY_PROJECTION	protein_coding	CNBD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	1185456	1240719	R	cyclic nucleotide binding domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16145]
ENSCJAG00000010220	KNOWN_BY_PROJECTION	protein_coding	RBM42	chromosome:C_jacchus3.2.1:22:1:49145316:1	29454330	29464987	D	RNA binding motif protein 42 [Source:HGNC Symbol;Acc:HGNC:28117]
ENSCJAG00000005413	KNOWN	protein_coding	LMNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	10143136	10171686	D	Lamin isoform A {ECO:0000313|EMBL:JAB19190.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010111}  [Source:UniProtKB/TrEMBL;Acc:F6YTV2]
ENSCJAG00000017498	NOVEL	pseudogene	ENSCJAG00000017498	chromosome:C_jacchus3.2.1:5:1:159171411:1	1253631	1254516	D	<no descrition>
ENSCJAG00000016742	KNOWN	protein_coding	FEM1C	chromosome:C_jacchus3.2.1:2:1:204313951:1	91259154	91283656	D	Protein fem-1 homolog C {ECO:0000313|EMBL:JAB09936.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030797}  [Source:UniProtKB/TrEMBL;Acc:F6UHD7]
ENSCJAG00000034722	NOVEL	protein_coding	ENSCJAG00000034722	chromosome:C_jacchus3.2.1:2:1:204313951:1	91289464	91290348	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043616}  [Source:UniProtKB/TrEMBL;Acc:F7IET7]
ENSCJAG00000016720	KNOWN	protein_coding	CCDC112	chromosome:C_jacchus3.2.1:2:1:204313951:1	91510222	91541982	D	Coiled-coil domain-containing protein 112 isoform 1 {ECO:0000313|EMBL:JAB02624.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030793}  [Source:UniProtKB/TrEMBL;Acc:F6UHH4]
ENSCJAG00000016715	NOVEL	protein_coding	ENSCJAG00000016715	chromosome:C_jacchus3.2.1:2:1:204313951:1	91543668	91544508	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030754}  [Source:UniProtKB/TrEMBL;Acc:F6W8W9]
ENSCJAG00000017501	KNOWN	protein_coding	PHF20	chromosome:C_jacchus3.2.1:5:1:159171411:1	1257912	1432029	R	PHD finger protein 20 {ECO:0000313|EMBL:JAB44730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033349}  [Source:UniProtKB/TrEMBL;Acc:F6THN4]
ENSCJAG00000016700	KNOWN_BY_PROJECTION	protein_coding	PGGT1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	91546598	91603860	D	protein geranylgeranyltransferase type I, beta subunit [Source:HGNC Symbol;Acc:HGNC:8895]
ENSCJAG00000018764	KNOWN_BY_PROJECTION	protein_coding	ARID4A	chromosome:C_jacchus3.2.1:10:1:132174527:1	83166803	83240487	D	AT rich interactive domain 4A (RBP1-like) [Source:HGNC Symbol;Acc:HGNC:9885]
ENSCJAG00000016675	KNOWN_BY_PROJECTION	protein_coding	TRIM36	chromosome:C_jacchus3.2.1:2:1:204313951:1	91641709	91697449	D	tripartite motif containing 36 [Source:HGNC Symbol;Acc:HGNC:16280]
ENSCJAG00000011348	KNOWN_BY_PROJECTION	protein_coding	BCAP31	chromosome:C_jacchus3.2.1:X:1:142054208:1	140230558	140257185	R	B-cell receptor-associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]
ENSCJAG00000007579	KNOWN_BY_PROJECTION	protein_coding	ACTL8	chromosome:C_jacchus3.2.1:7:1:155834243:1	51751655	51756142	D	actin-like 8 [Source:HGNC Symbol;Acc:HGNC:24018]
ENSCJAG00000011337	KNOWN_BY_PROJECTION	protein_coding	ABCD1	chromosome:C_jacchus3.2.1:X:1:142054208:1	140258953	140277350	D	ATP-binding cassette, sub-family D (ALD), member 1 [Source:HGNC Symbol;Acc:HGNC:61]
ENSCJAG00000010216	NOVEL	pseudogene	ENSCJAG00000010216	chromosome:C_jacchus3.2.1:22:1:49145316:1	29472120	29472358	D	<no descrition>
ENSCJAG00000007559	KNOWN_BY_PROJECTION	protein_coding	IGSF21	chromosome:C_jacchus3.2.1:7:1:155834243:1	52064873	52345494	D	immunoglobin superfamily, member 21 [Source:HGNC Symbol;Acc:HGNC:28246]
ENSCJAG00000010211	KNOWN_BY_PROJECTION	protein_coding	COX6B1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29477781	29487919	D	cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) [Source:HGNC Symbol;Acc:HGNC:2280]
ENSCJAG00000009923	KNOWN_BY_PROJECTION	protein_coding	UPK1A	chromosome:C_jacchus3.2.1:22:1:49145316:1	29495579	29507078	D	uroplakin 1A [Source:HGNC Symbol;Acc:HGNC:12577]
ENSCJAG00000019451	KNOWN_BY_PROJECTION	protein_coding	TMC8	chromosome:C_jacchus3.2.1:5:1:159171411:1	127387262	127401744	D	transmembrane channel-like 8 [Source:HGNC Symbol;Acc:HGNC:20474]
ENSCJAG00000007556	NOVEL	pseudogene	ENSCJAG00000007556	chromosome:C_jacchus3.2.1:7:1:155834243:1	52454338	52456670	D	<no descrition>
ENSCJAG00000032608	NOVEL	protein_coding	ENSCJAG00000032608	chromosome:C_jacchus3.2.1:22:1:49145316:1	29510720	29511631	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052420}  [Source:UniProtKB/TrEMBL;Acc:F7I9H8]
ENSCJAG00000011267	KNOWN_BY_PROJECTION	protein_coding	PLXNB3	chromosome:C_jacchus3.2.1:X:1:142054208:1	140299450	140314725	D	plexin B3 [Source:HGNC Symbol;Acc:HGNC:9105]
ENSCJAG00000010122	KNOWN_BY_PROJECTION	protein_coding	IGFLR1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29556047	29559432	R	IGF-like family receptor 1 [Source:HGNC Symbol;Acc:HGNC:23620]
ENSCJAG00000010104	KNOWN	protein_coding	PSENEN	chromosome:C_jacchus3.2.1:22:1:49145316:1	29562456	29563864	D	Gamma-secretase subunit PEN-2 {ECO:0000313|EMBL:JAB04436.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018570}  [Source:UniProtKB/TrEMBL;Acc:F7DH46]
ENSCJAG00000010100	KNOWN_BY_PROJECTION	protein_coding	LIN37	chromosome:C_jacchus3.2.1:22:1:49145316:1	29566121	29571678	D	lin-37 DREAM MuvB core complex component [Source:HGNC Symbol;Acc:HGNC:33234]
ENSCJAG00000007521	KNOWN_BY_PROJECTION	protein_coding	PAX7	chromosome:C_jacchus3.2.1:7:1:155834243:1	52619201	52736953	D	paired box 7 [Source:HGNC Symbol;Acc:HGNC:8621]
ENSCJAG00000010098	KNOWN	protein_coding	HSPB6	chromosome:C_jacchus3.2.1:22:1:49145316:1	29571802	29574259	R	Heat shock protein beta-6 {ECO:0000313|EMBL:JAB10386.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018549}  [Source:UniProtKB/TrEMBL;Acc:F7EBV5]
ENSCJAG00000019470	KNOWN_BY_PROJECTION	protein_coding	C17orf99	chromosome:C_jacchus3.2.1:5:1:159171411:1	127417833	127424174	D	chromosome 17 open reading frame 99 [Source:HGNC Symbol;Acc:HGNC:34490]
ENSCJAG00000019477	KNOWN_BY_PROJECTION	protein_coding	SYNGR2	chromosome:C_jacchus3.2.1:5:1:159171411:1	127426365	127429944	D	synaptogyrin 2 [Source:HGNC Symbol;Acc:HGNC:11499]
ENSCJAG00000009534	KNOWN_BY_PROJECTION	protein_coding	PROSER3	chromosome:C_jacchus3.2.1:22:1:49145316:1	29575415	29586947	D	proline and serine rich 3 [Source:HGNC Symbol;Acc:HGNC:25204]
ENSCJAG00000019485	KNOWN	protein_coding	TK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	127432083	127442851	R	Thymidine kinase {ECO:0000256|RuleBase:RU000544}  [Source:UniProtKB/TrEMBL;Acc:F7H3K4]
ENSCJAG00000034500	KNOWN_BY_PROJECTION	protein_coding	AFMID	chromosome:C_jacchus3.2.1:5:1:159171411:1	127457436	127460764	D	arylformamidase [Source:HGNC Symbol;Acc:HGNC:20910]
ENSCJAG00000016659	KNOWN	protein_coding	KCNN2	chromosome:C_jacchus3.2.1:2:1:204313951:1	92313463	92454268	R	Small conductance calcium-activated potassium channel protein 2 isoform a {ECO:0000313|EMBL:JAB08138.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030676}  [Source:UniProtKB/TrEMBL;Acc:F7A5Q4]
ENSCJAG00000019490	KNOWN	protein_coding	BIRC5	chromosome:C_jacchus3.2.1:5:1:159171411:1	127470442	127481269	D	Baculoviral IAP repeat-containing protein 5 isoform 1 {ECO:0000313|EMBL:JAB16226.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036200}  [Source:UniProtKB/TrEMBL;Acc:F7GEY1]
ENSCJAG00000010016	KNOWN_BY_PROJECTION	protein_coding	ARHGAP33	chromosome:C_jacchus3.2.1:22:1:49145316:1	29593678	29607666	D	Rho GTPase activating protein 33 [Source:HGNC Symbol;Acc:HGNC:23085]
ENSCJAG00000037375	NOVEL	protein_coding	ENSCJAG00000037375	chromosome:C_jacchus3.2.1:5:1:159171411:1	127487859	127495512	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052251}  [Source:UniProtKB/TrEMBL;Acc:F7IJ53]
ENSCJAG00000016598	KNOWN	protein_coding	YTHDC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	93333756	93425860	R	Putative ATP-dependent RNA helicase YTHDC2 {ECO:0000313|EMBL:JAB04814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030639}  [Source:UniProtKB/TrEMBL;Acc:F7BPX9]
ENSCJAG00000003710	KNOWN	protein_coding	HINT3	chromosome:C_jacchus3.2.1:4:1:171630274:1	126166733	126189008	D	Histidine triad nucleotide-binding protein 3 {ECO:0000313|EMBL:JAB02304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006735}  [Source:UniProtKB/TrEMBL;Acc:F7F335]
ENSCJAG00000003686	KNOWN	protein_coding	TRMT11	chromosome:C_jacchus3.2.1:4:1:171630274:1	126195790	126251475	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006723}  [Source:UniProtKB/TrEMBL;Acc:F7F3C8]
ENSCJAG00000019509	KNOWN	protein_coding	PGS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	127641315	127699611	D	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial {ECO:0000313|EMBL:JAB06000.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036261}  [Source:UniProtKB/TrEMBL;Acc:F7EII6]
ENSCJAG00000017535	KNOWN	protein_coding	RBM39	chromosome:C_jacchus3.2.1:5:1:159171411:1	1461277	1504529	D	RNA-binding protein 39 isoform c {ECO:0000313|EMBL:JAB22372.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032440}  [Source:UniProtKB/TrEMBL;Acc:F7DJP7]
ENSCJAG00000011233	KNOWN	protein_coding	SRPK3	chromosome:C_jacchus3.2.1:X:1:142054208:1	140315473	140327056	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047782}  [Source:UniProtKB/TrEMBL;Acc:F7E2V2]
ENSCJAG00000009939	KNOWN_BY_PROJECTION	protein_coding	NPHS1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29617895	29672091	R	nephrosis 1, congenital, Finnish type (nephrin) [Source:HGNC Symbol;Acc:HGNC:7908]
ENSCJAG00000005605	KNOWN_BY_PROJECTION	protein_coding	SEMA4A	chromosome:C_jacchus3.2.1:18:1:47448759:1	10187826	10212543	D	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A [Source:HGNC Symbol;Acc:HGNC:10729]
ENSCJAG00000016593	NOVEL	pseudogene	ENSCJAG00000016593	chromosome:C_jacchus3.2.1:2:1:204313951:1	93492919	93494001	D	<no descrition>
ENSCJAG00000005625	KNOWN	protein_coding	SLC25A44	chromosome:C_jacchus3.2.1:18:1:47448759:1	10229741	10243764	D	Solute carrier family 25 member 44 {ECO:0000313|EMBL:JAB06102.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010294}  [Source:UniProtKB/TrEMBL;Acc:F7BUC7]
ENSCJAG00000016557	KNOWN	protein_coding	MCC	chromosome:C_jacchus3.2.1:2:1:204313951:1	93627806	93915088	D	Colorectal mutant cancer protein isoform 2 {ECO:0000313|EMBL:JAB06423.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030503}  [Source:UniProtKB/TrEMBL;Acc:F6YPD0]
ENSCJAG00000005636	KNOWN_BY_PROJECTION	protein_coding	PMF1	chromosome:C_jacchus3.2.1:18:1:47448759:1	10246311	10278746	D	polyamine-modulated factor 1 [Source:HGNC Symbol;Acc:HGNC:9112]
ENSCJAG00000003684	KNOWN	protein_coding	CENPW	chromosome:C_jacchus3.2.1:4:1:171630274:1	126569357	126577836	D	Centromere protein W {ECO:0000313|EMBL:JAB03351.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006680}  [Source:UniProtKB/TrEMBL;Acc:F7GQF0]
ENSCJAG00000018798	KNOWN	protein_coding	TIMM9	chromosome:C_jacchus3.2.1:10:1:132174527:1	83274845	83289961	R	Mitochondrial import inner membrane translocase subunit Tim9 {ECO:0000313|EMBL:JAB08858.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050089}  [Source:UniProtKB/TrEMBL;Acc:F7F0A5]
ENSCJAG00000003682	NOVEL	pseudogene	ENSCJAG00000003682	chromosome:C_jacchus3.2.1:4:1:171630274:1	127060627	127061463	R	<no descrition>
ENSCJAG00000003669	KNOWN_BY_PROJECTION	protein_coding	RSPO3	chromosome:C_jacchus3.2.1:4:1:171630274:1	127318138	127397575	D	R-spondin 3 [Source:HGNC Symbol;Acc:HGNC:20866]
ENSCJAG00000007516	KNOWN_BY_PROJECTION	protein_coding	TAS1R2	chromosome:C_jacchus3.2.1:7:1:155834243:1	52828023	52854098	R	taste receptor, type 1, member 2 [Source:HGNC Symbol;Acc:HGNC:14905]
ENSCJAG00000019552	KNOWN_BY_PROJECTION	protein_coding	DNAH17	chromosome:C_jacchus3.2.1:5:1:159171411:1	127698993	127734042	R	dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
ENSCJAG00000011185	KNOWN_BY_PROJECTION	protein_coding	IDH3G	chromosome:C_jacchus3.2.1:X:1:142054208:1	140321129	140328663	R	isocitrate dehydrogenase 3 (NAD+) gamma [Source:HGNC Symbol;Acc:HGNC:5386]
ENSCJAG00000007183	KNOWN	protein_coding	ALDH4A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	52864960	52897799	R	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial isoform a {ECO:0000313|EMBL:JAB09645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013384}  [Source:UniProtKB/TrEMBL;Acc:F6ZZR3]
ENSCJAG00000018807	KNOWN_BY_PROJECTION	protein_coding	KIAA0586	chromosome:C_jacchus3.2.1:10:1:132174527:1	83289911	83414977	D	KIAA0586 [Source:HGNC Symbol;Acc:HGNC:19960]
ENSCJAG00000022515	NOVEL	pseudogene	ENSCJAG00000022515	chromosome:C_jacchus3.2.1:2:1:204313951:1	93810624	93811000	R	<no descrition>
ENSCJAG00000003662	KNOWN	protein_coding	RNF146	chromosome:C_jacchus3.2.1:4:1:171630274:1	127457459	127479157	D	E3 ubiquitin-protein ligase RNF146 isoform b {ECO:0000313|EMBL:JAB07158.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006628}  [Source:UniProtKB/TrEMBL;Acc:F7HB59]
ENSCJAG00000007173	KNOWN_BY_PROJECTION	protein_coding	IFFO2	chromosome:C_jacchus3.2.1:7:1:155834243:1	52904188	52951406	R	intermediate filament family orphan 2 [Source:HGNC Symbol;Acc:HGNC:27006]
ENSCJAG00000009900	KNOWN_BY_PROJECTION	protein_coding	KIRREL2	chromosome:C_jacchus3.2.1:22:1:49145316:1	29676927	29687429	D	kin of IRRE like 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:18816]
ENSCJAG00000019525	NOVEL	protein_coding	ENSCJAG00000019525	chromosome:C_jacchus3.2.1:5:1:159171411:1	127736337	127865015	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036316}  [Source:UniProtKB/TrEMBL;Acc:F7H8J6]
ENSCJAG00000016536	KNOWN	protein_coding	DCP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	93925540	93978948	R	M7GpppN-mRNA hydrolase isoform 1 {ECO:0000313|EMBL:JAB19623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030448}  [Source:UniProtKB/TrEMBL;Acc:F7B8L4]
ENSCJAG00000003649	KNOWN_BY_PROJECTION	protein_coding	ECHDC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	127480156	127534004	R	ethylmalonyl-CoA decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:21489]
ENSCJAG00000016517	KNOWN	protein_coding	REEP5	chromosome:C_jacchus3.2.1:2:1:204313951:1	94033029	94079222	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030404}  [Source:UniProtKB/TrEMBL;Acc:F7CLV6]
ENSCJAG00000005656	KNOWN	protein_coding	PAQR6	chromosome:C_jacchus3.2.1:18:1:47448759:1	10278841	10284426	R	Progestin and adipoQ receptor family member 6 isoform 2 {ECO:0000313|EMBL:JAB02285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010395}  [Source:UniProtKB/TrEMBL;Acc:F6Y983]
ENSCJAG00000011167	KNOWN_BY_PROJECTION	protein_coding	SSR4	chromosome:C_jacchus3.2.1:X:1:142054208:1	140328789	140331831	D	signal sequence receptor, delta [Source:HGNC Symbol;Acc:HGNC:11326]
ENSCJAG00000016512	KNOWN	protein_coding	ENSCJAG00000016512	chromosome:C_jacchus3.2.1:2:1:204313951:1	94089993	94097228	R	Signal recognition particle 19 kDa protein isoform 1 {ECO:0000313|EMBL:JAB02791.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030388}  [Source:UniProtKB/TrEMBL;Acc:F6V6L2]
ENSCJAG00000011125	KNOWN_BY_PROJECTION	protein_coding	PDZD4	chromosome:C_jacchus3.2.1:X:1:142054208:1	140336659	140364564	R	PDZ domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21167]
ENSCJAG00000009828	KNOWN	protein_coding	APLP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29688864	29701590	D	Amyloid-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB36522.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018153}  [Source:UniProtKB/TrEMBL;Acc:F7DJJ0]
ENSCJAG00000005684	KNOWN	protein_coding	SMG5	chromosome:C_jacchus3.2.1:18:1:47448759:1	10285294	10320107	R	Protein SMG5 {ECO:0000313|EMBL:JAB08887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010554}  [Source:UniProtKB/TrEMBL;Acc:F7ID90]
ENSCJAG00000003646	NOVEL	pseudogene	ENSCJAG00000003646	chromosome:C_jacchus3.2.1:4:1:171630274:1	127550321	127551030	D	<no descrition>
ENSCJAG00000003640	NOVEL	protein_coding	ENSCJAG00000003640	chromosome:C_jacchus3.2.1:4:1:171630274:1	127556096	127556949	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006605}  [Source:UniProtKB/TrEMBL;Acc:F7HBE1]
ENSCJAG00000003616	NOVEL	protein_coding	ENSCJAG00000003616	chromosome:C_jacchus3.2.1:4:1:171630274:1	127627702	127705592	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006566}  [Source:UniProtKB/TrEMBL;Acc:F7EC78]
ENSCJAG00000011023	KNOWN_BY_PROJECTION	protein_coding	L1CAM	chromosome:C_jacchus3.2.1:X:1:142054208:1	140399070	140414106	R	L1 cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:6470]
ENSCJAG00000018896	NOVEL	pseudogene	ENSCJAG00000018896	chromosome:C_jacchus3.2.1:10:1:132174527:1	83327164	83327700	D	<no descrition>
ENSCJAG00000033051	NOVEL	protein_coding	ENSCJAG00000033051	chromosome:C_jacchus3.2.1:10:1:132174527:1	83455800	83456648	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045346}  [Source:UniProtKB/TrEMBL;Acc:F6SWD9]
ENSCJAG00000018902	KNOWN	protein_coding	DACT1	chromosome:C_jacchus3.2.1:10:1:132174527:1	83494430	83508407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050814}  [Source:UniProtKB/TrEMBL;Acc:F7GME9]
ENSCJAG00000003611	KNOWN_BY_PROJECTION	protein_coding	C6orf58	chromosome:C_jacchus3.2.1:4:1:171630274:1	127770002	127798171	D	chromosome 6 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:20960]
ENSCJAG00000006886	KNOWN_BY_PROJECTION	protein_coding	UBR4	chromosome:C_jacchus3.2.1:7:1:155834243:1	53085402	53221520	R	ubiquitin protein ligase E3 component n-recognin 4 [Source:HGNC Symbol;Acc:HGNC:30313]
ENSCJAG00000019557	KNOWN	protein_coding	CYTH1	chromosome:C_jacchus3.2.1:5:1:159171411:1	127940971	128046029	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028447}  [Source:UniProtKB/TrEMBL;Acc:F6W865]
ENSCJAG00000003598	KNOWN_BY_PROJECTION	protein_coding	THEMIS	chromosome:C_jacchus3.2.1:4:1:171630274:1	127852333	128107573	R	thymocyte selection associated [Source:HGNC Symbol;Acc:HGNC:21569]
ENSCJAG00000009808	KNOWN_BY_PROJECTION	protein_coding	NFKBID	chromosome:C_jacchus3.2.1:22:1:49145316:1	29712810	29727093	R	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta [Source:HGNC Symbol;Acc:HGNC:15671]
ENSCJAG00000005765	KNOWN_BY_PROJECTION	protein_coding	TMEM79	chromosome:C_jacchus3.2.1:18:1:47448759:1	10322277	10329557	D	transmembrane protein 79 [Source:HGNC Symbol;Acc:HGNC:28196]
ENSCJAG00000005757	KNOWN	protein_coding	C1ORF85	chromosome:C_jacchus3.2.1:18:1:47448759:1	10331479	10334626	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010577}  [Source:UniProtKB/TrEMBL;Acc:F7IAW9]
ENSCJAG00000018906	KNOWN	protein_coding	DAAM1	chromosome:C_jacchus3.2.1:10:1:132174527:1	84132564	84323514	D	Disheveled-associated activator of morphogenesis 1 isoform 2 {ECO:0000313|EMBL:JAB30298.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035214}  [Source:UniProtKB/TrEMBL;Acc:F7IN17]
ENSCJAG00000016440	KNOWN_BY_PROJECTION	protein_coding	APC	chromosome:C_jacchus3.2.1:2:1:204313951:1	94112735	94262943	R	adenomatous polyposis coli [Source:HGNC Symbol;Acc:HGNC:583]
ENSCJAG00000019596	KNOWN_BY_PROJECTION	protein_coding	USP36	chromosome:C_jacchus3.2.1:5:1:159171411:1	128060425	128100728	R	ubiquitin specific peptidase 36 [Source:HGNC Symbol;Acc:HGNC:20062]
ENSCJAG00000009797	KNOWN_BY_PROJECTION	protein_coding	HCST	chromosome:C_jacchus3.2.1:22:1:49145316:1	29727295	29730246	D	hematopoietic cell signal transducer [Source:HGNC Symbol;Acc:HGNC:16977]
ENSCJAG00000009777	KNOWN	protein_coding	TYROBP	chromosome:C_jacchus3.2.1:22:1:49145316:1	29730371	29734704	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017953}  [Source:UniProtKB/TrEMBL;Acc:F7I9Q3]
ENSCJAG00000016437	NOVEL	pseudogene	ENSCJAG00000016437	chromosome:C_jacchus3.2.1:2:1:204313951:1	94522654	94524035	R	<no descrition>
ENSCJAG00000003603	NOVEL	protein_coding	ENSCJAG00000003603	chromosome:C_jacchus3.2.1:4:1:171630274:1	127915640	127917218	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006541}  [Source:UniProtKB/TrEMBL;Acc:F7EQW1]
ENSCJAG00000016406	KNOWN_BY_PROJECTION	protein_coding	EPB41L4A	chromosome:C_jacchus3.2.1:2:1:204313951:1	94524461	94803747	D	erythrocyte membrane protein band 4.1 like 4A [Source:HGNC Symbol;Acc:HGNC:13278]
ENSCJAG00000016389	KNOWN	protein_coding	NREP	chromosome:C_jacchus3.2.1:2:1:204313951:1	95243512	95272713	D	Neuronal regeneration-related protein isoform a {ECO:0000313|EMBL:JAB09913.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048726}  [Source:UniProtKB/TrEMBL;Acc:F6QWF7]
ENSCJAG00000017625	NOVEL	protein_coding	C20ORF52	chromosome:C_jacchus3.2.1:5:1:159171411:1	1507312	1508963	R	Putative uncharacterized protein C20ORF52 {ECO:0000313|EMBL:ABY90122.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032471}  [Source:UniProtKB/TrEMBL;Acc:B0KWM6]
ENSCJAG00000005776	KNOWN	protein_coding	CCT3	chromosome:C_jacchus3.2.1:18:1:47448759:1	10351911	10375850	R	T-complex protein 1 subunit gamma {ECO:0000256|RuleBase:RU004191}  [Source:UniProtKB/TrEMBL;Acc:F7HMY5]
ENSCJAG00000031343	NOVEL	protein_coding	ENSCJAG00000031343	chromosome:C_jacchus3.2.1:X:1:142054208:1	140418444	140425190	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042540}  [Source:UniProtKB/TrEMBL;Acc:F6VQU6]
ENSCJAG00000011022	KNOWN_BY_PROJECTION	protein_coding	AVPR2	chromosome:C_jacchus3.2.1:X:1:142054208:1	140442277	140443205	D	arginine vasopressin receptor 2 [Source:HGNC Symbol;Acc:HGNC:897]
ENSCJAG00000035702	NOVEL	pseudogene	ENSCJAG00000035702	chromosome:C_jacchus3.2.1:2:1:204313951:1	95271012	95272711	D	<no descrition>
ENSCJAG00000017633	KNOWN_BY_PROJECTION	protein_coding	NFS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	1508988	1540294	D	NFS1 cysteine desulfurase [Source:HGNC Symbol;Acc:HGNC:15910]
ENSCJAG00000011008	KNOWN_BY_PROJECTION	protein_coding	ARHGAP4	chromosome:C_jacchus3.2.1:X:1:142054208:1	140443975	140463921	R	Rho GTPase activating protein 4 [Source:HGNC Symbol;Acc:HGNC:674]
ENSCJAG00000003496	KNOWN_BY_PROJECTION	protein_coding	PTPRK	chromosome:C_jacchus3.2.1:4:1:171630274:1	128151832	128731814	R	protein tyrosine phosphatase, receptor type, K [Source:HGNC Symbol;Acc:HGNC:9674]
ENSCJAG00000019630	KNOWN_BY_PROJECTION	protein_coding	TIMP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	128121627	128184721	R	TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]
ENSCJAG00000016381	KNOWN	protein_coding	STARD4	chromosome:C_jacchus3.2.1:2:1:204313951:1	95487946	95501037	D	StAR-related lipid transfer protein 4 {ECO:0000313|EMBL:JAB02780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006457}  [Source:UniProtKB/TrEMBL;Acc:F7H101]
ENSCJAG00000009541	KNOWN_BY_PROJECTION	protein_coding	ENGASE	chromosome:C_jacchus3.2.1:5:1:159171411:1	128213557	128344310	D	endo-beta-N-acetylglucosaminidase [Source:HGNC Symbol;Acc:HGNC:24622]
ENSCJAG00000016346	KNOWN	protein_coding	CAMK4	chromosome:C_jacchus3.2.1:2:1:204313951:1	95514738	95790741	R	Calcium/calmodulin-dependent protein kinase type IV {ECO:0000313|EMBL:JAB16745.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030127}  [Source:UniProtKB/TrEMBL;Acc:F6WCB6]
ENSCJAG00000019635	KNOWN_BY_PROJECTION	protein_coding	LGALS3BP	chromosome:C_jacchus3.2.1:5:1:159171411:1	128231049	128239078	R	lectin, galactoside-binding, soluble, 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]
ENSCJAG00000017642	KNOWN	protein_coding	CPNE1	chromosome:C_jacchus3.2.1:5:1:159171411:1	1545497	1586329	D	RNA-binding protein 12 {ECO:0000313|EMBL:JAB10639.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032627}  [Source:UniProtKB/TrEMBL;Acc:F7ECW4]
ENSCJAG00000019644	KNOWN_BY_PROJECTION	protein_coding	CANT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	128249065	128261915	R	calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]
ENSCJAG00000014506	KNOWN	protein_coding	ARD1A	chromosome:C_jacchus3.2.1:X:1:142054208:1	140468040	140473121	R	N-acetyltransferase ARD1 (Predicted) {ECO:0000313|EMBL:ABZ10478.1}; N-alpha-acetyltransferase 10 isoform 1 {ECO:0000313|EMBL:JAB02711.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026745}  [Source:UniProtKB/TrEMBL;Acc:B0KWW1]
ENSCJAG00000009525	NOVEL	protein_coding	ENSCJAG00000009525	chromosome:C_jacchus3.2.1:5:1:159171411:1	128273344	128273941	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017442}  [Source:UniProtKB/TrEMBL;Acc:F7HY86]
ENSCJAG00000009775	KNOWN	protein_coding	LRFN3	chromosome:C_jacchus3.2.1:22:1:49145316:1	29761584	29769346	D	Leucine-rich repeat and fibronectin type-III domain-containing protein 3 {ECO:0000313|EMBL:JAB15734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017915}  [Source:UniProtKB/TrEMBL;Acc:F7IEE4]
ENSCJAG00000009528	KNOWN	protein_coding	C1QTNF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	128278078	128302594	D	Complement C1q tumor necrosis factor-related protein 1 isoform 1 {ECO:0000313|EMBL:JAB07287.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017459}  [Source:UniProtKB/TrEMBL;Acc:F7HVW7]
ENSCJAG00000005831	KNOWN_BY_PROJECTION	protein_coding	TSACC	chromosome:C_jacchus3.2.1:18:1:47448759:1	10374761	10389174	D	TSSK6 activating co-chaperone [Source:HGNC Symbol;Acc:HGNC:30636]
ENSCJAG00000009750	KNOWN	protein_coding	ALKBH6	chromosome:C_jacchus3.2.1:22:1:49145316:1	29797907	29811354	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017890}  [Source:UniProtKB/TrEMBL;Acc:F7IR71]
ENSCJAG00000016277	KNOWN_BY_PROJECTION	protein_coding	WDR36	chromosome:C_jacchus3.2.1:2:1:204313951:1	95908235	95944695	R	WD repeat domain 36 [Source:HGNC Symbol;Acc:HGNC:30696]
ENSCJAG00000009563	KNOWN	protein_coding	RBFOX3	chromosome:C_jacchus3.2.1:5:1:159171411:1	128348044	128879369	R	RNA binding protein fox-1 homolog 3 {ECO:0000313|EMBL:JAB17212.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017606}  [Source:UniProtKB/TrEMBL;Acc:F7I2V7]
ENSCJAG00000014500	KNOWN_BY_PROJECTION	protein_coding	RENBP	chromosome:C_jacchus3.2.1:X:1:142054208:1	140473123	140484508	R	renin binding protein [Source:HGNC Symbol;Acc:HGNC:9959]
ENSCJAG00000005838	KNOWN_BY_PROJECTION	protein_coding	RHBG	chromosome:C_jacchus3.2.1:18:1:47448759:1	10416610	10435092	D	Rh family, B glycoprotein (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:14572]
ENSCJAG00000005841	NOVEL	protein_coding	ENSCJAG00000005841	chromosome:C_jacchus3.2.1:18:1:47448759:1	10448626	10448901	R	40S ribosomal protein S27 {ECO:0000256|RuleBase:RU000671}  [Source:UniProtKB/TrEMBL;Acc:F7IHV9]
ENSCJAG00000005846	NOVEL	pseudogene	ENSCJAG00000005846	chromosome:C_jacchus3.2.1:18:1:47448759:1	10515656	10516064	D	<no descrition>
ENSCJAG00000005848	NOVEL	protein_coding	ENSCJAG00000005848	chromosome:C_jacchus3.2.1:18:1:47448759:1	10525302	10540516	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010734}  [Source:UniProtKB/TrEMBL;Acc:F7IHS1]
ENSCJAG00000009694	KNOWN	protein_coding	CLIP3	chromosome:C_jacchus3.2.1:22:1:49145316:1	29811796	29832017	R	CAP-Gly domain-containing linker protein 3 {ECO:0000313|EMBL:JAB07771.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017858}  [Source:UniProtKB/TrEMBL;Acc:F7HKM6]
ENSCJAG00000014470	KNOWN_BY_PROJECTION	protein_coding	HCFC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	140490273	140514218	R	host cell factor C1 [Source:HGNC Symbol;Acc:HGNC:4839]
ENSCJAG00000006824	KNOWN_BY_PROJECTION	protein_coding	EMC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	53230283	53265364	R	ER membrane protein complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28957]
ENSCJAG00000016274	KNOWN_BY_PROJECTION	protein_coding	TSLP	chromosome:C_jacchus3.2.1:2:1:204313951:1	95953505	95958961	R	thymic stromal lymphopoietin [Source:HGNC Symbol;Acc:HGNC:30743]
ENSCJAG00000031404	NOVEL	protein_coding	ENSCJAG00000031404	chromosome:C_jacchus3.2.1:2:1:204313951:1	96012888	96014256	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051055}  [Source:UniProtKB/TrEMBL;Acc:F7CHV9]
ENSCJAG00000016272	NOVEL	pseudogene	ENSCJAG00000016272	chromosome:C_jacchus3.2.1:2:1:204313951:1	96164457	96165026	D	<no descrition>
ENSCJAG00000005862	KNOWN_BY_PROJECTION	protein_coding	IQGAP3	chromosome:C_jacchus3.2.1:18:1:47448759:1	10586102	10634496	R	IQ motif containing GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:20669]
ENSCJAG00000016257	KNOWN	protein_coding	SLC25A46	chromosome:C_jacchus3.2.1:2:1:204313951:1	96245712	96269406	R	Solute carrier family 25 member 46 {ECO:0000313|EMBL:JAB07350.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029939}  [Source:UniProtKB/TrEMBL;Acc:F7I9N7]
ENSCJAG00000018962	KNOWN_BY_PROJECTION	protein_coding	GPR135	chromosome:C_jacchus3.2.1:10:1:132174527:1	84404645	84406447	R	G protein-coupled receptor 135 [Source:HGNC Symbol;Acc:HGNC:19991]
ENSCJAG00000018964	KNOWN	protein_coding	L3HYPDH	chromosome:C_jacchus3.2.1:10:1:132174527:1	84411282	84420508	R	Trans-L-3-hydroxyproline dehydratase {ECO:0000313|EMBL:JAB03206.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035231}  [Source:UniProtKB/TrEMBL;Acc:F7IKN7]
ENSCJAG00000023112	NOVEL	protein_coding	TMEM187	chromosome:C_jacchus3.2.1:X:1:142054208:1	140517287	140526491	D	Transmembrane protein 187 (Predicted) {ECO:0000313|EMBL:ABZ10481.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041640}  [Source:UniProtKB/TrEMBL;Acc:B0KWV3]
ENSCJAG00000017715	KNOWN_BY_PROJECTION	protein_coding	SPAG4	chromosome:C_jacchus3.2.1:5:1:159171411:1	1588820	1593429	R	sperm associated antigen 4 [Source:HGNC Symbol;Acc:HGNC:11214]
ENSCJAG00000014452	KNOWN_BY_PROJECTION	protein_coding	IRAK1	chromosome:C_jacchus3.2.1:X:1:142054208:1	140560659	140568294	R	interleukin-1 receptor-associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:6112]
ENSCJAG00000018970	KNOWN_BY_PROJECTION	protein_coding	JKAMP	chromosome:C_jacchus3.2.1:10:1:132174527:1	84420597	84439638	D	JNK1/MAPK8-associated membrane protein [Source:HGNC Symbol;Acc:HGNC:20184]
ENSCJAG00000016241	KNOWN_BY_PROJECTION	protein_coding	TMEM232	chromosome:C_jacchus3.2.1:2:1:204313951:1	96278516	96594963	D	transmembrane protein 232 [Source:HGNC Symbol;Acc:HGNC:37270]
ENSCJAG00000017709	NOVEL	protein_coding	FER1L4	chromosome:C_jacchus3.2.1:5:1:159171411:1	1599504	1648296	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032649}  [Source:UniProtKB/TrEMBL;Acc:F7DIV6]
ENSCJAG00000016796	KNOWN	protein_coding	MECP2	chromosome:C_jacchus3.2.1:X:1:142054208:1	140579558	140919012	R	Methyl CpG binding protein 2 isoform 1 (Predicted) {ECO:0000313|EMBL:ABZ10483.1}; Methyl-CpG-binding protein 2 isoform 1 {ECO:0000313|EMBL:JAB04603.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043945}  [Source:UniProtKB/TrEMBL;Acc:B0KWV5]
ENSCJAG00000006812	KNOWN	protein_coding	MRTO4	chromosome:C_jacchus3.2.1:7:1:155834243:1	53265613	53273426	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012627}; mRNA turnover protein 4 homolog {ECO:0000313|EMBL:JAB05453.1}  [Source:UniProtKB/TrEMBL;Acc:F6QB78]
ENSCJAG00000009688	KNOWN	protein_coding	THAP8	chromosome:C_jacchus3.2.1:22:1:49145316:1	29834444	29853078	R	THAP domain-containing protein 8 {ECO:0000313|EMBL:JAB02532.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017749}  [Source:UniProtKB/TrEMBL;Acc:F7I9V8]
ENSCJAG00000037475	NOVEL	protein_coding	ENSCJAG00000037475	chromosome:C_jacchus3.2.1:5:1:159171411:1	128498825	128685447	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017524}  [Source:UniProtKB/TrEMBL;Acc:F7IJF8]
ENSCJAG00000006796	KNOWN_BY_PROJECTION	protein_coding	AKR7A2	chromosome:C_jacchus3.2.1:7:1:155834243:1	53284226	53325952	R	aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) [Source:HGNC Symbol;Acc:HGNC:389]
ENSCJAG00000009621	KNOWN_BY_PROJECTION	protein_coding	ENPP7	chromosome:C_jacchus3.2.1:5:1:159171411:1	129006555	129018343	D	ectonucleotide pyrophosphatase/phosphodiesterase 7 [Source:HGNC Symbol;Acc:HGNC:23764]
ENSCJAG00000016199	KNOWN_BY_PROJECTION	protein_coding	MAN2A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	97195409	97383475	R	mannosidase, alpha, class 2A, member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
ENSCJAG00000009616	KNOWN_BY_PROJECTION	protein_coding	WDR62	chromosome:C_jacchus3.2.1:22:1:49145316:1	29853218	29899978	D	WD repeat domain 62 [Source:HGNC Symbol;Acc:HGNC:24502]
ENSCJAG00000017795	KNOWN_BY_PROJECTION	protein_coding	CBX2	chromosome:C_jacchus3.2.1:5:1:159171411:1	129072529	129079041	D	chromobox homolog 2 [Source:HGNC Symbol;Acc:HGNC:1552]
ENSCJAG00000017786	KNOWN	protein_coding	CBX8	chromosome:C_jacchus3.2.1:5:1:159171411:1	129088432	129091119	R	Chromobox protein homolog 8 {ECO:0000313|EMBL:JAB06005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032806}  [Source:UniProtKB/TrEMBL;Acc:F7F3P9]
ENSCJAG00000018979	KNOWN_BY_PROJECTION	protein_coding	CCDC175	chromosome:C_jacchus3.2.1:10:1:132174527:1	84439337	84510374	R	coiled-coil domain containing 175 [Source:HGNC Symbol;Acc:HGNC:19847]
ENSCJAG00000017772	KNOWN_BY_PROJECTION	protein_coding	CBX4	chromosome:C_jacchus3.2.1:5:1:159171411:1	129128648	129134593	R	chromobox homolog 4 [Source:HGNC Symbol;Acc:HGNC:1554]
ENSCJAG00000009682	KNOWN_BY_PROJECTION	protein_coding	OVOL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	29905806	29908419	D	ovo-like zinc finger 3 [Source:HGNC Symbol;Acc:HGNC:14186]
ENSCJAG00000017771	NOVEL	pseudogene	ENSCJAG00000017771	chromosome:C_jacchus3.2.1:5:1:159171411:1	129185891	129186357	R	<no descrition>
ENSCJAG00000009671	KNOWN	protein_coding	POLR2I	chromosome:C_jacchus3.2.1:22:1:49145316:1	29908468	29910073	R	DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586, ECO:0000256|RuleBase:RU004351}  [Source:UniProtKB/TrEMBL;Acc:F7IC64]
ENSCJAG00000014412	KNOWN_BY_PROJECTION	protein_coding	OPN1LW	chromosome:C_jacchus3.2.1:X:1:142054208:1	140692959	140709469	D	opsin 1 (cone pigments), long-wave-sensitive [Source:HGNC Symbol;Acc:HGNC:9936]
ENSCJAG00000017755	KNOWN_BY_PROJECTION	protein_coding	TBC1D16	chromosome:C_jacchus3.2.1:5:1:159171411:1	129238656	129330813	R	TBC1 domain family, member 16 [Source:HGNC Symbol;Acc:HGNC:28356]
ENSCJAG00000009194	KNOWN_BY_PROJECTION	protein_coding	CCDC40	chromosome:C_jacchus3.2.1:5:1:159171411:1	129331818	129402530	D	coiled-coil domain containing 40 [Source:HGNC Symbol;Acc:HGNC:26090]
ENSCJAG00000017733	KNOWN	protein_coding	ERGIC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	1649391	1666153	R	Endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform b {ECO:0000313|EMBL:JAB07859.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032815}  [Source:UniProtKB/TrEMBL;Acc:F7EQK7]
ENSCJAG00000018989	KNOWN_BY_PROJECTION	protein_coding	RTN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	84529031	84692730	R	reticulon 1 [Source:HGNC Symbol;Acc:HGNC:10467]
ENSCJAG00000014368	KNOWN_BY_PROJECTION	protein_coding	TKTL1	chromosome:C_jacchus3.2.1:X:1:142054208:1	140732481	140771687	D	transketolase-like 1 [Source:HGNC Symbol;Acc:HGNC:11835]
ENSCJAG00000009129	KNOWN_BY_PROJECTION	protein_coding	GAA	chromosome:C_jacchus3.2.1:5:1:159171411:1	129408477	129425677	D	glucosidase, alpha; acid [Source:HGNC Symbol;Acc:HGNC:4065]
ENSCJAG00000016196	NOVEL	protein_coding	ENSCJAG00000016196	chromosome:C_jacchus3.2.1:2:1:204313951:1	97478686	97479569	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029813}  [Source:UniProtKB/TrEMBL;Acc:F7HR77]
ENSCJAG00000016168	KNOWN	protein_coding	PJA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	97694098	97733099	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029808}  [Source:UniProtKB/TrEMBL;Acc:F7HRC2]
ENSCJAG00000006002	KNOWN_BY_PROJECTION	protein_coding	TTC24	chromosome:C_jacchus3.2.1:18:1:47448759:1	10644650	10651034	D	tetratricopeptide repeat domain 24 [Source:HGNC Symbol;Acc:HGNC:32348]
ENSCJAG00000009658	KNOWN	protein_coding	TBCB	chromosome:C_jacchus3.2.1:22:1:49145316:1	29909722	29921021	D	Tubulin-folding cofactor B {ECO:0000313|EMBL:JAB03875.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017709}  [Source:UniProtKB/TrEMBL;Acc:F7IEI4]
ENSCJAG00000034881	KNOWN_BY_PROJECTION	protein_coding	FLNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	140779123	140793251	R	filamin A, alpha [Source:HGNC Symbol;Acc:HGNC:3754]
ENSCJAG00000006018	KNOWN	protein_coding	APOA1BP	chromosome:C_jacchus3.2.1:18:1:47448759:1	10659584	10664662	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011104}  [Source:UniProtKB/TrEMBL;Acc:F7I6J2]
ENSCJAG00000006785	KNOWN_BY_PROJECTION	protein_coding	PQLC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	53326664	53342495	D	PQ loop repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:26001]
ENSCJAG00000003439	NOVEL	protein_coding	ENSCJAG00000003439	chromosome:C_jacchus3.2.1:5:1:159171411:1	129494453	129495040	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006244}  [Source:UniProtKB/TrEMBL;Acc:F7H190]
ENSCJAG00000009594	KNOWN_BY_PROJECTION	protein_coding	CAPNS1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29941613	29955449	D	calpain, small subunit 1 [Source:HGNC Symbol;Acc:HGNC:1481]
ENSCJAG00000016120	KNOWN	protein_coding	FER	chromosome:C_jacchus3.2.1:2:1:204313951:1	97871211	98377958	R	Tyrosine-protein kinase {ECO:0000256|PIRNR:PIRNR000632}  [Source:UniProtKB/TrEMBL;Acc:F7I7H7]
ENSCJAG00000006715	KNOWN	protein_coding	CAPZB	chromosome:C_jacchus3.2.1:7:1:155834243:1	53347267	53507678	R	F-actin-capping protein subunit beta isoform 1 {ECO:0000313|EMBL:JAB06737.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048157}  [Source:UniProtKB/TrEMBL;Acc:F7H3P1]
ENSCJAG00000003412	KNOWN_BY_PROJECTION	protein_coding	CARD14	chromosome:C_jacchus3.2.1:5:1:159171411:1	129499131	129528587	D	caspase recruitment domain family, member 14 [Source:HGNC Symbol;Acc:HGNC:16446]
ENSCJAG00000006782	NOVEL	protein_coding	ENSCJAG00000006782	chromosome:C_jacchus3.2.1:7:1:155834243:1	53416645	53417034	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012548}  [Source:UniProtKB/TrEMBL;Acc:F7GXQ6]
ENSCJAG00000006709	KNOWN	protein_coding	MINOS1	chromosome:C_jacchus3.2.1:7:1:155834243:1	53597794	53638206	D	Mitochondrial inner membrane organizing system protein 1 isoform a {ECO:0000313|EMBL:JAB10772.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012390}  [Source:UniProtKB/TrEMBL;Acc:F7GXY7]
ENSCJAG00000006048	NOVEL	protein_coding	ENSCJAG00000006048	chromosome:C_jacchus3.2.1:18:1:47448759:1	10662353	10669576	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047358}  [Source:UniProtKB/TrEMBL;Acc:F7HWZ7]
ENSCJAG00000011853	NOVEL	protein_coding	EMD	chromosome:C_jacchus3.2.1:X:1:142054208:1	140802655	140805055	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021779}  [Source:UniProtKB/TrEMBL;Acc:F6T3F1]
ENSCJAG00000006699	NOVEL	protein_coding	ENSCJAG00000006699	chromosome:C_jacchus3.2.1:7:1:155834243:1	53652797	53667459	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012381}  [Source:UniProtKB/TrEMBL;Acc:F7GY73]
ENSCJAG00000003395	KNOWN	protein_coding	SGSH	chromosome:C_jacchus3.2.1:5:1:159171411:1	129530204	129539379	R	N-sulfoglucosamine sulfohydrolase {ECO:0000313|EMBL:JAB04447.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006174}  [Source:UniProtKB/TrEMBL;Acc:F7DJR5]
ENSCJAG00000006689	KNOWN_BY_PROJECTION	protein_coding	HTR6	chromosome:C_jacchus3.2.1:7:1:155834243:1	53676288	53688780	D	5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled [Source:HGNC Symbol;Acc:HGNC:5301]
ENSCJAG00000011822	NOVEL	protein_coding	RPL10	chromosome:C_jacchus3.2.1:X:1:142054208:1	140824470	140826939	D	Ribosomal protein L10 (Predicted) {ECO:0000313|EMBL:ABZ10488.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021754}  [Source:UniProtKB/TrEMBL;Acc:B0KWW6]
ENSCJAG00000003968	NOVEL	pseudogene	ENSCJAG00000003968	chromosome:C_jacchus3.2.1:4:1:171630274:1	129119510	129121347	D	<no descrition>
ENSCJAG00000006071	KNOWN_BY_PROJECTION	protein_coding	HAPLN2	chromosome:C_jacchus3.2.1:18:1:47448759:1	10684389	10691605	D	hyaluronan and proteoglycan link protein 2 [Source:HGNC Symbol;Acc:HGNC:17410]
ENSCJAG00000011800	NOVEL	protein_coding	DNASE1L1	chromosome:C_jacchus3.2.1:X:1:142054208:1	140828653	140831482	R	Deoxyribonuclease {ECO:0000256|PIRNR:PIRNR000988}  [Source:UniProtKB/TrEMBL;Acc:F6QNM7]
ENSCJAG00000006639	KNOWN_BY_PROJECTION	protein_coding	TMCO4	chromosome:C_jacchus3.2.1:7:1:155834243:1	53691730	53806641	R	transmembrane and coiled-coil domains 4 [Source:HGNC Symbol;Acc:HGNC:27393]
ENSCJAG00000016116	NOVEL	pseudogene	ENSCJAG00000016116	chromosome:C_jacchus3.2.1:2:1:204313951:1	98532978	98534431	R	<no descrition>
ENSCJAG00000022514	NOVEL	pseudogene	ENSCJAG00000022514	chromosome:C_jacchus3.2.1:2:1:204313951:1	98536930	98537992	D	<no descrition>
ENSCJAG00000016107	KNOWN	protein_coding	FBXL17	chromosome:C_jacchus3.2.1:2:1:204313951:1	98737958	99309254	D	F-box/LRR-repeat protein 17 {ECO:0000313|EMBL:JAB20084.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029653}  [Source:UniProtKB/TrEMBL;Acc:F7HKX7]
ENSCJAG00000006078	KNOWN	protein_coding	BCAN	chromosome:C_jacchus3.2.1:18:1:47448759:1	10712329	10729965	D	Brevican core protein isoform 2 {ECO:0000313|EMBL:JAB31713.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011207}  [Source:UniProtKB/TrEMBL;Acc:F7ISQ7]
ENSCJAG00000017799	KNOWN_BY_PROJECTION	protein_coding	C20orf173	chromosome:C_jacchus3.2.1:5:1:159171411:1	1703274	1707240	D	chromosome 20 open reading frame 173 [Source:HGNC Symbol;Acc:HGNC:16166]
ENSCJAG00000016995	NOVEL	protein_coding	TAZ	chromosome:C_jacchus3.2.1:X:1:142054208:1	140839295	140845882	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044558}  [Source:UniProtKB/TrEMBL;Acc:F7FWM7]
ENSCJAG00000034266	NOVEL	protein_coding	ENSCJAG00000034266	chromosome:C_jacchus3.2.1:2:1:204313951:1	99505816	99506493	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046096}  [Source:UniProtKB/TrEMBL;Acc:F6YU34]
ENSCJAG00000009585	KNOWN_BY_PROJECTION	protein_coding	COX7A1	chromosome:C_jacchus3.2.1:22:1:49145316:1	29956059	29958038	R	cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) [Source:HGNC Symbol;Acc:HGNC:2287]
ENSCJAG00000016099	KNOWN_BY_PROJECTION	protein_coding	EFNA5	chromosome:C_jacchus3.2.1:2:1:204313951:1	99757795	99805038	D	ephrin-A5 [Source:HGNC Symbol;Acc:HGNC:3225]
ENSCJAG00000016097	NOVEL	protein_coding	ENSCJAG00000016097	chromosome:C_jacchus3.2.1:2:1:204313951:1	102234013	102234949	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052280}  [Source:UniProtKB/TrEMBL;Acc:F7IGU1]
ENSCJAG00000006633	KNOWN_BY_PROJECTION	protein_coding	OTUD3	chromosome:C_jacchus3.2.1:7:1:155834243:1	53892025	53921268	D	OTU deubiquitinase 3 [Source:HGNC Symbol;Acc:HGNC:29038]
ENSCJAG00000009527	KNOWN_BY_PROJECTION	protein_coding	ZNF565	chromosome:C_jacchus3.2.1:22:1:49145316:1	29974147	30003715	R	zinc finger protein 565 [Source:HGNC Symbol;Acc:HGNC:26726]
ENSCJAG00000009524	KNOWN	protein_coding	ZNF146	chromosome:C_jacchus3.2.1:22:1:49145316:1	30003239	30031031	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017441}; Zinc finger protein OZF {ECO:0000313|EMBL:JAB05045.1}  [Source:UniProtKB/TrEMBL;Acc:F7HY88]
ENSCJAG00000009113	KNOWN	protein_coding	NUDT12	chromosome:C_jacchus3.2.1:2:1:204313951:1	103830237	103842697	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016711}  [Source:UniProtKB/TrEMBL;Acc:F7BMV6]
ENSCJAG00000013451	NOVEL	pseudogene	ENSCJAG00000013451	chromosome:C_jacchus3.2.1:22:1:49145316:1	30067383	30067642	D	<no descrition>
ENSCJAG00000009497	KNOWN_BY_PROJECTION	protein_coding	ZNF850	chromosome:C_jacchus3.2.1:22:1:49145316:1	30104081	30283931	D	zinc finger protein 850 [Source:HGNC Symbol;Acc:HGNC:27994]
ENSCJAG00000003372	KNOWN_BY_PROJECTION	protein_coding	SLC26A11	chromosome:C_jacchus3.2.1:5:1:159171411:1	129541405	129564828	D	solute carrier family 26 (anion exchanger), member 11 [Source:HGNC Symbol;Acc:HGNC:14471]
ENSCJAG00000017803	NOVEL	protein_coding	CEP250	chromosome:C_jacchus3.2.1:5:1:159171411:1	1734324	1791874	R	Centrosomal protein 2 isoform 1 (Predicted) {ECO:0000313|EMBL:ABY90116.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042976}  [Source:UniProtKB/TrEMBL;Acc:B0KWM0]
ENSCJAG00000003364	NOVEL	protein_coding	ENSCJAG00000003364	chromosome:C_jacchus3.2.1:5:1:159171411:1	129596834	129637617	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006115}  [Source:UniProtKB/TrEMBL;Acc:F7F5N5]
ENSCJAG00000016910	KNOWN	protein_coding	ATP6AP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	140853597	140868880	D	Rab GDP dissociation inhibitor alpha {ECO:0000313|EMBL:JAB05796.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031215}  [Source:UniProtKB/TrEMBL;Acc:F7IF48]
ENSCJAG00000006628	KNOWN_BY_PROJECTION	protein_coding	PLA2G2E	chromosome:C_jacchus3.2.1:7:1:155834243:1	53932463	53936171	R	phospholipase A2, group IIE [Source:HGNC Symbol;Acc:HGNC:13414]
ENSCJAG00000034405	NOVEL	protein_coding	ENSCJAG00000034405	chromosome:C_jacchus3.2.1:7:1:155834243:1	53990169	53990464	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045557}  [Source:UniProtKB/TrEMBL;Acc:F6SIP1]
ENSCJAG00000003340	KNOWN_BY_PROJECTION	protein_coding	RNF213	chromosome:C_jacchus3.2.1:5:1:159171411:1	129641950	129696599	D	ring finger protein 213 [Source:HGNC Symbol;Acc:HGNC:14539]
ENSCJAG00000006614	KNOWN	protein_coding	PLA2G2A	chromosome:C_jacchus3.2.1:7:1:155834243:1	54003970	54008590	R	Phospholipase A2, membrane associated {ECO:0000313|EMBL:JAB15838.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012218}  [Source:UniProtKB/TrEMBL;Acc:F7GTB5]
ENSCJAG00000006603	KNOWN_BY_PROJECTION	protein_coding	PLA2G5	chromosome:C_jacchus3.2.1:7:1:155834243:1	54086460	54109981	D	phospholipase A2, group V [Source:HGNC Symbol;Acc:HGNC:9038]
ENSCJAG00000006593	KNOWN_BY_PROJECTION	protein_coding	PLA2G2D	chromosome:C_jacchus3.2.1:7:1:155834243:1	54135351	54143462	R	phospholipase A2, group IID [Source:HGNC Symbol;Acc:HGNC:9033]
ENSCJAG00000017826	KNOWN_BY_PROJECTION	protein_coding	GDF5	chromosome:C_jacchus3.2.1:5:1:159171411:1	1792775	1813827	D	growth differentiation factor 5 [Source:HGNC Symbol;Acc:HGNC:4220]
ENSCJAG00000006103	KNOWN_BY_PROJECTION	protein_coding	NES	chromosome:C_jacchus3.2.1:18:1:47448759:1	10740665	10748810	R	nestin [Source:HGNC Symbol;Acc:HGNC:7756]
ENSCJAG00000017827	KNOWN_BY_PROJECTION	protein_coding	GDF5OS	chromosome:C_jacchus3.2.1:5:1:159171411:1	1811697	1814146	R	growth differentiation factor 5 opposite strand [Source:HGNC Symbol;Acc:HGNC:33435]
ENSCJAG00000006586	KNOWN	protein_coding	PLA2G2F	chromosome:C_jacchus3.2.1:7:1:155834243:1	54161836	54168901	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050881}  [Source:UniProtKB/TrEMBL;Acc:F7EWB3]
ENSCJAG00000006584	KNOWN_BY_PROJECTION	protein_coding	PLA2G2C	chromosome:C_jacchus3.2.1:7:1:155834243:1	54181352	54186550	R	phospholipase A2, group IIC [Source:HGNC Symbol;Acc:HGNC:9032]
ENSCJAG00000034912	NOVEL	protein_coding	ENSCJAG00000034912	chromosome:C_jacchus3.2.1:2:1:204313951:1	103915575	103978565	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051801}  [Source:UniProtKB/TrEMBL;Acc:F6YXJ3]
ENSCJAG00000006115	KNOWN_BY_PROJECTION	protein_coding	CRABP2	chromosome:C_jacchus3.2.1:18:1:47448759:1	10767834	10774678	R	cellular retinoic acid binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2339]
ENSCJAG00000009125	KNOWN	protein_coding	C5ORF30	chromosome:C_jacchus3.2.1:2:1:204313951:1	104124152	104145205	R	UNC119-binding protein C5orf30 {ECO:0000313|EMBL:JAB03539.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016714}  [Source:UniProtKB/TrEMBL;Acc:F7BMU1]
ENSCJAG00000003343	KNOWN_BY_PROJECTION	protein_coding	LAMA2	chromosome:C_jacchus3.2.1:4:1:171630274:1	129122684	129770433	D	laminin, alpha 2 [Source:HGNC Symbol;Acc:HGNC:6482]
ENSCJAG00000006126	KNOWN	protein_coding	ISG20L2	chromosome:C_jacchus3.2.1:18:1:47448759:1	10791918	10798051	R	Interferon-stimulated 20 kDa exonuclease-like 2 {ECO:0000313|EMBL:JAB06804.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011255}  [Source:UniProtKB/TrEMBL;Acc:F7IQA4]
ENSCJAG00000006132	KNOWN_BY_PROJECTION	protein_coding	RRNAD1	chromosome:C_jacchus3.2.1:18:1:47448759:1	10798104	10806413	D	ribosomal RNA adenine dimethylase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24273]
ENSCJAG00000003335	NOVEL	protein_coding	ENSCJAG00000003335	chromosome:C_jacchus3.2.1:5:1:159171411:1	129654508	129701298	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006055}  [Source:UniProtKB/TrEMBL;Acc:F7GWG3]
ENSCJAG00000009127	KNOWN	protein_coding	PPIP5K2	chromosome:C_jacchus3.2.1:2:1:204313951:1	104206101	104284792	R	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 isoform 2 {ECO:0000313|EMBL:JAB05447.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016953}  [Source:UniProtKB/TrEMBL;Acc:F7CGN6]
ENSCJAG00000003329	KNOWN_BY_PROJECTION	protein_coding	ENDOV	chromosome:C_jacchus3.2.1:5:1:159171411:1	129701374	129717626	D	endonuclease V [Source:HGNC Symbol;Acc:HGNC:26640]
ENSCJAG00000006151	KNOWN	protein_coding	MRPL24	chromosome:C_jacchus3.2.1:18:1:47448759:1	10806805	10808248	R	39S ribosomal protein L24, mitochondrial {ECO:0000313|EMBL:JAB03116.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011297}  [Source:UniProtKB/TrEMBL;Acc:F7IIC7]
ENSCJAG00000017831	KNOWN	protein_coding	UQCC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	1844958	1962987	D	Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog isoform a {ECO:0000313|EMBL:JAB02640.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049053}  [Source:UniProtKB/TrEMBL;Acc:F6XA27]
ENSCJAG00000003317	KNOWN_BY_PROJECTION	protein_coding	NPTX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	129761344	129767237	R	neuronal pentraxin I [Source:HGNC Symbol;Acc:HGNC:7952]
ENSCJAG00000006157	KNOWN_BY_PROJECTION	protein_coding	HDGF	chromosome:C_jacchus3.2.1:18:1:47448759:1	10811059	10823643	R	hepatoma-derived growth factor [Source:HGNC Symbol;Acc:HGNC:4856]
ENSCJAG00000009265	KNOWN	protein_coding	GIN1	chromosome:C_jacchus3.2.1:2:1:204313951:1	104293902	104320569	D	Gypsy retrotransposon integrase-like protein 1 {ECO:0000313|EMBL:JAB10920.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016992}  [Source:UniProtKB/TrEMBL;Acc:F7BKX7]
ENSCJAG00000009485	KNOWN	protein_coding	ZNF567	chromosome:C_jacchus3.2.1:22:1:49145316:1	30123317	30161671	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047284}; Zinc finger protein 567 {ECO:0000313|EMBL:JAB16018.1}  [Source:UniProtKB/TrEMBL;Acc:F7IDI3]
ENSCJAG00000023243	KNOWN	protein_coding	UBXN10	chromosome:C_jacchus3.2.1:7:1:155834243:1	54197208	54202720	D	UBX domain-containing protein 10 {ECO:0000313|EMBL:JAB21622.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041757}  [Source:UniProtKB/TrEMBL;Acc:F7G599]
ENSCJAG00000009464	KNOWN	protein_coding	ZNF382	chromosome:C_jacchus3.2.1:22:1:49145316:1	30226019	30250693	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017345}; Zinc finger protein 382 isoform 1 {ECO:0000313|EMBL:JAB06572.1}  [Source:UniProtKB/TrEMBL;Acc:F7IEV0]
ENSCJAG00000033098	NOVEL	pseudogene	ENSCJAG00000033098	chromosome:C_jacchus3.2.1:22:1:49145316:1	30264034	30264169	R	<no descrition>
ENSCJAG00000003276	KNOWN_BY_PROJECTION	protein_coding	RPTOR	chromosome:C_jacchus3.2.1:5:1:159171411:1	129830552	130260736	D	regulatory associated protein of MTOR, complex 1 [Source:HGNC Symbol;Acc:HGNC:30287]
ENSCJAG00000009456	KNOWN_BY_PROJECTION	protein_coding	ZNF260	chromosome:C_jacchus3.2.1:22:1:49145316:1	30295615	30309526	D	zinc finger protein 260 [Source:HGNC Symbol;Acc:HGNC:13499]
ENSCJAG00000006551	KNOWN_BY_PROJECTION	protein_coding	VWA5B1	chromosome:C_jacchus3.2.1:7:1:155834243:1	54314970	54360317	D	von Willebrand factor A domain containing 5B1 [Source:HGNC Symbol;Acc:HGNC:26538]
ENSCJAG00000016816	NOVEL	protein_coding	PLXNA3_2	chromosome:C_jacchus3.2.1:X:1:142054208:1	140869751	140898622	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031063}  [Source:UniProtKB/TrEMBL;Acc:F7HWF9]
ENSCJAG00000009444	KNOWN_BY_PROJECTION	protein_coding	ZNF566	chromosome:C_jacchus3.2.1:22:1:49145316:1	30324898	30344837	D	zinc finger protein 566 [Source:HGNC Symbol;Acc:HGNC:25919]
ENSCJAG00000009436	KNOWN_BY_PROJECTION	protein_coding	ZFP82	chromosome:C_jacchus3.2.1:22:1:49145316:1	30363861	30374462	D	ZFP82 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:28682]
ENSCJAG00000006542	KNOWN	protein_coding	CAMK2N1	chromosome:C_jacchus3.2.1:7:1:155834243:1	54494147	54498132	R	Calcium/calmodulin-dependent protein kinase II inhibitor 1 {ECO:0000313|EMBL:JAB11476.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012070}  [Source:UniProtKB/TrEMBL;Acc:F7GNI1]
ENSCJAG00000006524	KNOWN_BY_PROJECTION	protein_coding	MUL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	54511517	54520118	R	mitochondrial E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:25762]
ENSCJAG00000013369	KNOWN_BY_PROJECTION	protein_coding	ZNF568	chromosome:C_jacchus3.2.1:22:1:49145316:1	30432131	30467163	R	zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
ENSCJAG00000006519	KNOWN_BY_PROJECTION	protein_coding	FAM43B	chromosome:C_jacchus3.2.1:7:1:155834243:1	54569924	54570910	D	family with sequence similarity 43, member B [Source:HGNC Symbol;Acc:HGNC:31791]
ENSCJAG00000006509	KNOWN_BY_PROJECTION	protein_coding	CDA	chromosome:C_jacchus3.2.1:7:1:155834243:1	54609287	54638594	D	cytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]
ENSCJAG00000013405	KNOWN_BY_PROJECTION	protein_coding	ZNF829	chromosome:C_jacchus3.2.1:22:1:49145316:1	30467325	30485667	D	zinc finger protein 829 [Source:HGNC Symbol;Acc:HGNC:34032]
ENSCJAG00000006493	KNOWN	protein_coding	PINK1	chromosome:C_jacchus3.2.1:7:1:155834243:1	54667447	54683196	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012000}  [Source:UniProtKB/TrEMBL;Acc:F7HEJ2]
ENSCJAG00000020686	KNOWN_BY_PROJECTION	protein_coding	ZNF781	chromosome:C_jacchus3.2.1:22:1:49145316:1	30483419	30494757	R	zinc finger protein 781 [Source:HGNC Symbol;Acc:HGNC:26745]
ENSCJAG00000013413	KNOWN_BY_PROJECTION	protein_coding	ZNF790	chromosome:C_jacchus3.2.1:22:1:49145316:1	30529770	30538195	D	zinc finger protein 790 [Source:HGNC Symbol;Acc:HGNC:33114]
ENSCJAG00000006508	NOVEL	pseudogene	ENSCJAG00000006508	chromosome:C_jacchus3.2.1:7:1:155834243:1	54679868	54680070	R	<no descrition>
ENSCJAG00000013419	KNOWN_BY_PROJECTION	protein_coding	ZNF607	chromosome:C_jacchus3.2.1:22:1:49145316:1	30596310	30616030	D	zinc finger protein 607 [Source:HGNC Symbol;Acc:HGNC:28192]
ENSCJAG00000009479	KNOWN_BY_PROJECTION	protein_coding	ZFP30	chromosome:C_jacchus3.2.1:22:1:49145316:1	30620070	30648653	D	ZFP30 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29555]
ENSCJAG00000013430	KNOWN_BY_PROJECTION	protein_coding	ZNF540	chromosome:C_jacchus3.2.1:22:1:49145316:1	30659496	30670676	R	zinc finger protein 540 [Source:HGNC Symbol;Acc:HGNC:25331]
ENSCJAG00000006450	KNOWN_BY_PROJECTION	protein_coding	DDOST	chromosome:C_jacchus3.2.1:7:1:155834243:1	54683384	54695015	R	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) [Source:HGNC Symbol;Acc:HGNC:2728]
ENSCJAG00000006211	KNOWN	protein_coding	PRCC	chromosome:C_jacchus3.2.1:18:1:47448759:1	10840049	10877911	D	Proline-rich protein PRCC {ECO:0000313|EMBL:JAB04169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011445}  [Source:UniProtKB/TrEMBL;Acc:F7ISL3]
ENSCJAG00000019033	NOVEL	pseudogene	ENSCJAG00000019033	chromosome:C_jacchus3.2.1:10:1:132174527:1	84675021	84675628	D	<no descrition>
ENSCJAG00000019034	NOVEL	pseudogene	ENSCJAG00000019034	chromosome:C_jacchus3.2.1:10:1:132174527:1	84822908	84824165	R	<no descrition>
ENSCJAG00000009285	KNOWN_BY_PROJECTION	protein_coding	EIF3K	chromosome:C_jacchus3.2.1:2:1:204313951:1	104371744	104372384	R	eukaryotic translation initiation factor 3, subunit K [Source:HGNC Symbol;Acc:HGNC:24656]
ENSCJAG00000013364	KNOWN_BY_PROJECTION	protein_coding	ZNF571	chromosome:C_jacchus3.2.1:22:1:49145316:1	30679634	30713973	D	zinc finger protein 571 [Source:HGNC Symbol;Acc:HGNC:25000]
ENSCJAG00000017842	KNOWN_BY_PROJECTION	protein_coding	FAM83C	chromosome:C_jacchus3.2.1:5:1:159171411:1	1973267	1980618	D	family with sequence similarity 83, member C [Source:HGNC Symbol;Acc:HGNC:16121]
ENSCJAG00000019037	KNOWN_BY_PROJECTION	protein_coding	LRRC9	chromosome:C_jacchus3.2.1:10:1:132174527:1	84859844	85004851	D	leucine rich repeat containing 9 [Source:HGNC Symbol;Acc:HGNC:19848]
ENSCJAG00000006232	KNOWN_BY_PROJECTION	protein_coding	SH2D2A	chromosome:C_jacchus3.2.1:18:1:47448759:1	10883002	10892778	R	SH2 domain containing 2A [Source:HGNC Symbol;Acc:HGNC:10821]
ENSCJAG00000017846	KNOWN	protein_coding	EIF6	chromosome:C_jacchus3.2.1:5:1:159171411:1	1981305	1985207	D	Eukaryotic translation initiation factor 6 {ECO:0000256|HAMAP-Rule:MF_03132}  [Source:UniProtKB/TrEMBL;Acc:B0KWL6]
ENSCJAG00000013437	KNOWN_BY_PROJECTION	protein_coding	ZNF793	chromosome:C_jacchus3.2.1:22:1:49145316:1	30732961	30754855	D	zinc finger protein 793 [Source:HGNC Symbol;Acc:HGNC:33115]
ENSCJAG00000013441	NOVEL	protein_coding	ENSCJAG00000013441	chromosome:C_jacchus3.2.1:22:1:49145316:1	30788173	30790088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024687}  [Source:UniProtKB/TrEMBL;Acc:F6TBH3]
ENSCJAG00000006426	KNOWN_BY_PROJECTION	protein_coding	KIF17	chromosome:C_jacchus3.2.1:7:1:155834243:1	54697208	54710407	R	kinesin family member 17 [Source:HGNC Symbol;Acc:HGNC:19167]
ENSCJAG00000013444	KNOWN_BY_PROJECTION	protein_coding	ZNF569	chromosome:C_jacchus3.2.1:22:1:49145316:1	30817516	30871881	D	zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
ENSCJAG00000006422	KNOWN	protein_coding	SH2D5	chromosome:C_jacchus3.2.1:7:1:155834243:1	54748738	54758749	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048575}  [Source:UniProtKB/TrEMBL;Acc:F7EW16]
ENSCJAG00000003261	KNOWN_BY_PROJECTION	protein_coding	CHMP6	chromosome:C_jacchus3.2.1:5:1:159171411:1	130279760	130288982	D	charged multivesicular body protein 6 [Source:HGNC Symbol;Acc:HGNC:25675]
ENSCJAG00000013449	NOVEL	protein_coding	ENSCJAG00000013449	chromosome:C_jacchus3.2.1:22:1:49145316:1	30900506	31119613	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024697}  [Source:UniProtKB/TrEMBL;Acc:F6TAI8]
ENSCJAG00000019055	KNOWN_BY_PROJECTION	protein_coding	PCNXL4	chromosome:C_jacchus3.2.1:10:1:132174527:1	85030407	85115511	D	pecanex-like 4 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:20349]
ENSCJAG00000006390	KNOWN	protein_coding	HP1BP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	54769755	54812296	R	Heterochromatin protein 1-binding protein 3 {ECO:0000313|EMBL:JAB11529.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045087}  [Source:UniProtKB/TrEMBL;Acc:F6T869]
ENSCJAG00000019070	KNOWN	protein_coding	DHRS7	chromosome:C_jacchus3.2.1:10:1:132174527:1	85090952	85112131	R	Dehydrogenase/reductase SDR family member 7 {ECO:0000313|EMBL:JAB04113.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035414}  [Source:UniProtKB/TrEMBL;Acc:F7IQ82]
ENSCJAG00000006249	KNOWN_BY_PROJECTION	protein_coding	NTRK1	chromosome:C_jacchus3.2.1:18:1:47448759:1	10891661	10957673	D	neurotrophic tyrosine kinase, receptor, type 1 [Source:HGNC Symbol;Acc:HGNC:8031]
ENSCJAG00000013471	KNOWN	protein_coding	ENSCJAG00000013471	chromosome:C_jacchus3.2.1:22:1:49145316:1	31000278	31069997	D	Callithrix jacchus zinc finger protein 585A (ZNF585A), mRNA. [Source:RefSeq mRNA;Acc:NM_001270921]
ENSCJAG00000017865	KNOWN_BY_PROJECTION	protein_coding	MMP24	chromosome:C_jacchus3.2.1:5:1:159171411:1	1989995	2018229	R	matrix metallopeptidase 24 (membrane-inserted) [Source:HGNC Symbol;Acc:HGNC:7172]
ENSCJAG00000009287	KNOWN	protein_coding	PAM	chromosome:C_jacchus3.2.1:2:1:204313951:1	104375310	104542831	R	Peptidyl-glycine alpha-amidating monooxygenase isoform c preproprotein {ECO:0000313|EMBL:JAB22841.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017236}  [Source:UniProtKB/TrEMBL;Acc:F7HYH8]
ENSCJAG00000013483	KNOWN_BY_PROJECTION	protein_coding	CEP131	chromosome:C_jacchus3.2.1:5:1:159171411:1	130331457	130485447	R	centrosomal protein 131kDa [Source:HGNC Symbol;Acc:HGNC:29511]
ENSCJAG00000017877	KNOWN	protein_coding	PROCR	chromosome:C_jacchus3.2.1:5:1:159171411:1	2082026	2087522	R	Endothelial protein C receptor {ECO:0000313|EMBL:JAB02214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032987}  [Source:UniProtKB/TrEMBL;Acc:F7G7F9]
ENSCJAG00000019087	KNOWN	protein_coding	PPM1A	chromosome:C_jacchus3.2.1:10:1:132174527:1	85205059	85247737	D	Protein phosphatase 1A isoform 2 {ECO:0000313|EMBL:JAB04464.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035454}  [Source:UniProtKB/TrEMBL;Acc:F7II72]
ENSCJAG00000003222	KNOWN_BY_PROJECTION	protein_coding	BAIAP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	130339210	130400482	D	BAI1-associated protein 2 [Source:HGNC Symbol;Acc:HGNC:947]
ENSCJAG00000013480	KNOWN_BY_PROJECTION	protein_coding	WDR87	chromosome:C_jacchus3.2.1:22:1:49145316:1	31126395	31186235	R	WD repeat domain 87 [Source:HGNC Symbol;Acc:HGNC:29934]
ENSCJAG00000006311	KNOWN_BY_PROJECTION	protein_coding	INSRR	chromosome:C_jacchus3.2.1:18:1:47448759:1	10915183	10934414	R	insulin receptor-related receptor [Source:HGNC Symbol;Acc:HGNC:6093]
ENSCJAG00000017880	KNOWN	protein_coding	EDEM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	2116484	2148464	D	ER degradation-enhancing alpha-mannosidase-like 2 isoform 1 {ECO:0000313|EMBL:JAB21687.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033064}  [Source:UniProtKB/TrEMBL;Acc:F6TUE0]
ENSCJAG00000003209	KNOWN	protein_coding	AATK	chromosome:C_jacchus3.2.1:5:1:159171411:1	130402364	130418141	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005867}  [Source:UniProtKB/TrEMBL;Acc:F7HR50]
ENSCJAG00000019107	KNOWN_BY_PROJECTION	protein_coding	C14orf39	chromosome:C_jacchus3.2.1:10:1:132174527:1	85396801	85458513	R	chromosome 14 open reading frame 39 [Source:HGNC Symbol;Acc:HGNC:19849]
ENSCJAG00000000052	KNOWN_BY_PROJECTION	protein_coding	ENTHD2	chromosome:C_jacchus3.2.1:5:1:159171411:1	130497610	130510990	R	ENTH domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26458]
ENSCJAG00000000048	KNOWN	protein_coding	C17ORF89	chromosome:C_jacchus3.2.1:5:1:159171411:1	130511264	130513241	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000090}; Uncharacterized protein C17orf89 {ECO:0000313|EMBL:JAB02068.1}  [Source:UniProtKB/TrEMBL;Acc:F7GTK9]
ENSCJAG00000000042	KNOWN_BY_PROJECTION	protein_coding	SLC38A10	chromosome:C_jacchus3.2.1:5:1:159171411:1	130517328	130564727	R	solute carrier family 38, member 10 [Source:HGNC Symbol;Acc:HGNC:28237]
ENSCJAG00000006345	KNOWN_BY_PROJECTION	protein_coding	PEAR1	chromosome:C_jacchus3.2.1:18:1:47448759:1	10979622	10993094	D	platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
ENSCJAG00000016810	KNOWN	protein_coding	LAGE3	chromosome:C_jacchus3.2.1:X:1:142054208:1	140902314	140904693	R	L antigen family member 3 {ECO:0000313|EMBL:JAB01975.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030930}  [Source:UniProtKB/TrEMBL;Acc:F6XD09]
ENSCJAG00000037808	KNOWN_BY_PROJECTION	protein_coding	SIPA1L3	chromosome:C_jacchus3.2.1:22:1:49145316:1	31186845	31808923	D	signal-induced proliferation-associated 1 like 3 [Source:HGNC Symbol;Acc:HGNC:23801]
ENSCJAG00000016805	KNOWN	protein_coding	UBL4A	chromosome:C_jacchus3.2.1:X:1:142054208:1	140913800	140915133	R	Ubiquitin-like protein 4A  [Source:UniProtKB/Swiss-Prot;Acc:B0KWT6]
ENSCJAG00000036758	NOVEL	protein_coding	ENSCJAG00000036758	chromosome:C_jacchus3.2.1:5:1:159171411:1	130571437	130708875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052432}  [Source:UniProtKB/TrEMBL;Acc:F7I756]
ENSCJAG00000000038	NOVEL	pseudogene	ENSCJAG00000000038	chromosome:C_jacchus3.2.1:5:1:159171411:1	130580559	130580860	R	<no descrition>
ENSCJAG00000037217	KNOWN	protein_coding	SLC10A3	chromosome:C_jacchus3.2.1:X:1:142054208:1	140915850	140919172	R	P3 protein isoform 1 {ECO:0000313|EMBL:JAB09617.1}; Solute carrier family 10, member 3 (Predicted) {ECO:0000313|EMBL:ABZ10496.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030910}  [Source:UniProtKB/TrEMBL;Acc:B0KWT7]
ENSCJAG00000007971	KNOWN_BY_PROJECTION	protein_coding	BAHCC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	130671173	130731218	D	BAH domain and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29279]
ENSCJAG00000031417	NOVEL	protein_coding	ENSCJAG00000031417	chromosome:C_jacchus3.2.1:4:1:171630274:1	129163062	129164049	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046573}  [Source:UniProtKB/TrEMBL;Acc:F7I1F9]
ENSCJAG00000016787	KNOWN	protein_coding	FAM3A	chromosome:C_jacchus3.2.1:X:1:142054208:1	140933317	140942042	R	Protein FAM3A isoform 3 {ECO:0000313|EMBL:JAB12260.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030893}  [Source:UniProtKB/TrEMBL;Acc:F6Z506]
ENSCJAG00000003308	KNOWN	protein_coding	ARHGAP18	chromosome:C_jacchus3.2.1:4:1:171630274:1	129830815	129967541	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006063}  [Source:UniProtKB/TrEMBL;Acc:F7GRE6]
ENSCJAG00000006379	KNOWN	protein_coding	LRRC71	chromosome:C_jacchus3.2.1:18:1:47448759:1	10996714	11010452	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049817}  [Source:UniProtKB/TrEMBL;Acc:F6ZVQ2]
ENSCJAG00000013515	KNOWN_BY_PROJECTION	protein_coding	DPF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	31455888	31500742	R	D4, zinc and double PHD fingers family 1 [Source:HGNC Symbol;Acc:HGNC:20225]
ENSCJAG00000001556	KNOWN	protein_coding	C17ORF70	chromosome:C_jacchus3.2.1:5:1:159171411:1	130763786	130808615	R	Fanconi anemia-associated protein of 100 kDa isoform b {ECO:0000313|EMBL:JAB06974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002803}  [Source:UniProtKB/TrEMBL;Acc:F7IDQ2]
ENSCJAG00000013522	KNOWN	protein_coding	PPP1R14A	chromosome:C_jacchus3.2.1:22:1:49145316:1	31527263	31533304	R	Protein phosphatase 1 regulatory subunit 14A isoform 1 {ECO:0000313|EMBL:JAB10512.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024871}  [Source:UniProtKB/TrEMBL;Acc:F6T9E6]
ENSCJAG00000001539	KNOWN_BY_PROJECTION	protein_coding	FSCN2	chromosome:C_jacchus3.2.1:5:1:159171411:1	130783282	130791788	D	fascin actin-bundling protein 2, retinal [Source:HGNC Symbol;Acc:HGNC:3960]
ENSCJAG00000013530	KNOWN_BY_PROJECTION	protein_coding	SPINT2	chromosome:C_jacchus3.2.1:22:1:49145316:1	31532762	31574657	D	serine peptidase inhibitor, Kunitz type, 2 [Source:HGNC Symbol;Acc:HGNC:11247]
ENSCJAG00000016764	NOVEL	protein_coding	IKBKG	chromosome:C_jacchus3.2.1:X:1:142054208:1	140934377	140993722	D	Inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, isoform 2 (Predicted) {ECO:0000313|EMBL:ABZ10499.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042484}  [Source:UniProtKB/TrEMBL;Acc:B0KWU0]
ENSCJAG00000019120	KNOWN_BY_PROJECTION	protein_coding	SIX6	chromosome:C_jacchus3.2.1:10:1:132174527:1	85485559	85488126	D	SIX homeobox 6 [Source:HGNC Symbol;Acc:HGNC:10892]
ENSCJAG00000013549	KNOWN	protein_coding	C22H19ORF33	chromosome:C_jacchus3.2.1:22:1:49145316:1	31587875	31588690	D	Immortalization up-regulated protein {ECO:0000313|EMBL:JAB16405.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024907}  [Source:UniProtKB/TrEMBL;Acc:F6S0T9]
ENSCJAG00000006258	KNOWN	protein_coding	EIF4G3	chromosome:C_jacchus3.2.1:7:1:155834243:1	54826588	55220894	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011715}  [Source:UniProtKB/TrEMBL;Acc:F7GM58]
ENSCJAG00000019124	NOVEL	pseudogene	ENSCJAG00000019124	chromosome:C_jacchus3.2.1:10:1:132174527:1	85606179	85606560	R	<no descrition>
ENSCJAG00000019128	KNOWN	protein_coding	SIX1	chromosome:C_jacchus3.2.1:10:1:132174527:1	85655679	85660400	R	Homeobox protein SIX1 {ECO:0000313|EMBL:JAB35873.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035508}  [Source:UniProtKB/TrEMBL;Acc:F7I8P1]
ENSCJAG00000006413	KNOWN_BY_PROJECTION	protein_coding	ARHGEF11	chromosome:C_jacchus3.2.1:18:1:47448759:1	11012158	11123767	R	Rho guanine nucleotide exchange factor (GEF) 11 [Source:HGNC Symbol;Acc:HGNC:14580]
ENSCJAG00000019133	KNOWN_BY_PROJECTION	protein_coding	SIX4	chromosome:C_jacchus3.2.1:10:1:132174527:1	85727102	85738164	R	SIX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:10890]
ENSCJAG00000013557	KNOWN_BY_PROJECTION	protein_coding	YIF1B	chromosome:C_jacchus3.2.1:22:1:49145316:1	31589080	31592777	R	Yip1 interacting factor homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30511]
ENSCJAG00000013561	KNOWN_BY_PROJECTION	protein_coding	KCNK6	chromosome:C_jacchus3.2.1:22:1:49145316:1	31605968	31615490	D	potassium channel, two pore domain subfamily K, member 6 [Source:HGNC Symbol;Acc:HGNC:6281]
ENSCJAG00000003299	KNOWN_BY_PROJECTION	protein_coding	TMEM244	chromosome:C_jacchus3.2.1:4:1:171630274:1	130093172	130119725	R	transmembrane protein 244 [Source:HGNC Symbol;Acc:HGNC:21571]
ENSCJAG00000009478	KNOWN_BY_PROJECTION	protein_coding	SLCO6A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	104904149	105049171	D	solute carrier organic anion transporter family, member 6A1 [Source:HGNC Symbol;Acc:HGNC:23613]
ENSCJAG00000019143	KNOWN	protein_coding	MNAT1	chromosome:C_jacchus3.2.1:10:1:132174527:1	85747450	85979245	D	CDK-activating kinase assembly factor MAT1 isoform 1 {ECO:0000313|EMBL:JAB08738.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035546}  [Source:UniProtKB/TrEMBL;Acc:F7I1L8]
ENSCJAG00000001569	KNOWN	protein_coding	NPLOC4	chromosome:C_jacchus3.2.1:5:1:159171411:1	130802819	130889240	R	Nuclear protein localization protein 4 homolog {ECO:0000313|EMBL:JAB06482.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002837}  [Source:UniProtKB/TrEMBL;Acc:F7IBG3]
ENSCJAG00000009487	KNOWN_BY_PROJECTION	protein_coding	SLCO4C1	chromosome:C_jacchus3.2.1:2:1:204313951:1	105127675	105188077	D	solute carrier organic anion transporter family, member 4C1 [Source:HGNC Symbol;Acc:HGNC:23612]
ENSCJAG00000009512	NOVEL	protein_coding	ENSCJAG00000009512	chromosome:C_jacchus3.2.1:2:1:204313951:1	105274780	105276625	R	<no descrition>
ENSCJAG00000009516	KNOWN_BY_PROJECTION	protein_coding	ZNF708	chromosome:C_jacchus3.2.1:2:1:204313951:1	106381006	106383044	R	zinc finger protein 708 [Source:HGNC Symbol;Acc:HGNC:12945]
ENSCJAG00000001598	KNOWN_BY_PROJECTION	protein_coding	TSPAN10	chromosome:C_jacchus3.2.1:5:1:159171411:1	130892477	130898571	D	tetraspanin 10 [Source:HGNC Symbol;Acc:HGNC:29942]
ENSCJAG00000013568	KNOWN_BY_PROJECTION	protein_coding	CATSPERG	chromosome:C_jacchus3.2.1:22:1:49145316:1	31624471	31661789	D	catsper channel auxiliary subunit gamma [Source:HGNC Symbol;Acc:HGNC:25243]
ENSCJAG00000009539	KNOWN	protein_coding	ST8SIA4	chromosome:C_jacchus3.2.1:2:1:204313951:1	106529309	106620771	D	CMP-N-acetylneuraminate-poly-alpha-2, 8-sialyltransferase isoform a {ECO:0000313|EMBL:JAB12063.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017489}  [Source:UniProtKB/TrEMBL;Acc:F7IRK5]
ENSCJAG00000001612	KNOWN_BY_PROJECTION	protein_coding	PDE6G	chromosome:C_jacchus3.2.1:5:1:159171411:1	130901560	130905314	R	phosphodiesterase 6G, cGMP-specific, rod, gamma [Source:HGNC Symbol;Acc:HGNC:8789]
ENSCJAG00000001620	KNOWN_BY_PROJECTION	protein_coding	OXLD1	chromosome:C_jacchus3.2.1:5:1:159171411:1	130910916	130912469	R	oxidoreductase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27901]
ENSCJAG00000009554	KNOWN	protein_coding	FAM174A	chromosome:C_jacchus3.2.1:2:1:204313951:1	106912901	106958949	R	Membrane protein FAM174A {ECO:0000313|EMBL:JAB28635.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017493}  [Source:UniProtKB/TrEMBL;Acc:F7IRI0]
ENSCJAG00000009558	NOVEL	pseudogene	ENSCJAG00000009558	chromosome:C_jacchus3.2.1:2:1:204313951:1	108567159	108568326	R	<no descrition>
ENSCJAG00000006546	KNOWN_BY_PROJECTION	protein_coding	ETV3L	chromosome:C_jacchus3.2.1:18:1:47448759:1	11167904	11174434	R	ets variant 3-like [Source:HGNC Symbol;Acc:HGNC:33834]
ENSCJAG00000001630	KNOWN	protein_coding	CCDC137	chromosome:C_jacchus3.2.1:5:1:159171411:1	130912647	130921317	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002898}  [Source:UniProtKB/TrEMBL;Acc:F7I4C6]
ENSCJAG00000006548	KNOWN	protein_coding	ETV3	chromosome:C_jacchus3.2.1:18:1:47448759:1	11201491	11214915	R	ETS translocation variant 3 isoform 1 {ECO:0000313|EMBL:JAB08160.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012111}  [Source:UniProtKB/TrEMBL;Acc:F7EJE7]
ENSCJAG00000001596	KNOWN_BY_PROJECTION	protein_coding	ARL16	chromosome:C_jacchus3.2.1:5:1:159171411:1	130928067	130930452	R	ADP-ribosylation factor-like 16 [Source:HGNC Symbol;Acc:HGNC:27902]
ENSCJAG00000009559	KNOWN	protein_coding	CHD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	108855112	108926841	D	Chromodomain-helicase-DNA-binding protein 1 {ECO:0000313|EMBL:JAB19621.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017699}  [Source:UniProtKB/TrEMBL;Acc:F7IRC5]
ENSCJAG00000003235	KNOWN	protein_coding	L3MBTL3	chromosome:C_jacchus3.2.1:4:1:171630274:1	130305418	130429311	D	Lethal(3)malignant brain tumor-like protein 3 isoform b {ECO:0000313|EMBL:JAB03959.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005988}  [Source:UniProtKB/TrEMBL;Acc:F7I9N0]
ENSCJAG00000001631	KNOWN_BY_PROJECTION	protein_coding	HGS	chromosome:C_jacchus3.2.1:5:1:159171411:1	130930592	130948903	D	hepatocyte growth factor-regulated tyrosine kinase substrate [Source:HGNC Symbol;Acc:HGNC:4897]
ENSCJAG00000017914	KNOWN	protein_coding	TRPC4AP	chromosome:C_jacchus3.2.1:5:1:159171411:1	2178253	2260992	D	Short transient receptor potential channel 4-associated protein isoform a {ECO:0000313|EMBL:JAB17006.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033179}  [Source:UniProtKB/TrEMBL;Acc:F6S078]
ENSCJAG00000006570	KNOWN_BY_PROJECTION	protein_coding	FCRL5	chromosome:C_jacchus3.2.1:18:1:47448759:1	11506913	11713686	R	Fc receptor-like 5 [Source:HGNC Symbol;Acc:HGNC:18508]
ENSCJAG00000016775	NOVEL	protein_coding	G6PD	chromosome:C_jacchus3.2.1:X:1:142054208:1	140961623	140976820	R	Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|RuleBase:RU000497}  [Source:UniProtKB/TrEMBL;Acc:B0KWT9]
ENSCJAG00000013583	KNOWN	protein_coding	PSMD8	chromosome:C_jacchus3.2.1:22:1:49145316:1	31665551	31844690	D	26S proteasome non-ATPase regulatory subunit 8 {ECO:0000313|EMBL:JAB11835.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024998}  [Source:UniProtKB/TrEMBL;Acc:F6Q7V8]
ENSCJAG00000016760	NOVEL	pseudogene	ENSCJAG00000016760	chromosome:C_jacchus3.2.1:X:1:142054208:1	141000962	141001236	D	<no descrition>
ENSCJAG00000013601	KNOWN_BY_PROJECTION	protein_coding	GGN	chromosome:C_jacchus3.2.1:22:1:49145316:1	31675145	31679307	R	gametogenetin [Source:HGNC Symbol;Acc:HGNC:18869]
ENSCJAG00000016753	KNOWN_BY_PROJECTION	protein_coding	GAB3	chromosome:C_jacchus3.2.1:X:1:142054208:1	141062053	141099356	R	GRB2-associated binding protein 3 [Source:HGNC Symbol;Acc:HGNC:17515]
ENSCJAG00000004210	KNOWN_BY_PROJECTION	protein_coding	DKC1	chromosome:C_jacchus3.2.1:X:1:142054208:1	141147085	141160020	D	dyskeratosis congenita 1, dyskerin [Source:HGNC Symbol;Acc:HGNC:2890]
ENSCJAG00000013614	KNOWN_BY_PROJECTION	protein_coding	SPRED3	chromosome:C_jacchus3.2.1:22:1:49145316:1	31681493	31687469	D	sprouty-related, EVH1 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:31041]
ENSCJAG00000001652	KNOWN	protein_coding	MRPL12	chromosome:C_jacchus3.2.1:5:1:159171411:1	130950644	130954454	D	39S ribosomal protein L12, mitochondrial {ECO:0000313|EMBL:JAB05441.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002943}  [Source:UniProtKB/TrEMBL;Acc:F7HX83]
ENSCJAG00000019157	KNOWN	protein_coding	TRMT5	chromosome:C_jacchus3.2.1:10:1:132174527:1	85986082	85992384	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035555}; tRNA (Guanine(37)-N1)-methyltransferase {ECO:0000313|EMBL:JAB25377.1}  [Source:UniProtKB/TrEMBL;Acc:F7EH64]
ENSCJAG00000017977	KNOWN_BY_PROJECTION	protein_coding	MYH7B	chromosome:C_jacchus3.2.1:5:1:159171411:1	2261155	2288447	R	myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
ENSCJAG00000001659	NOVEL	protein_coding	ENSCJAG00000001659	chromosome:C_jacchus3.2.1:5:1:159171411:1	130959611	130967508	D	<no descrition>
ENSCJAG00000013626	KNOWN	protein_coding	FAM98C	chromosome:C_jacchus3.2.1:22:1:49145316:1	31695617	31700979	D	Protein FAM98C {ECO:0000313|EMBL:JAB03108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025070}  [Source:UniProtKB/TrEMBL;Acc:F6YIT6]
ENSCJAG00000001675	NOVEL	protein_coding	ENSCJAG00000001675	chromosome:C_jacchus3.2.1:5:1:159171411:1	130979641	130981487	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002988}  [Source:UniProtKB/TrEMBL;Acc:F7ISX2]
ENSCJAG00000019127	KNOWN	protein_coding	ANAPC11	chromosome:C_jacchus3.2.1:5:1:159171411:1	131007984	131013086	D	Anaphase-promoting complex subunit 11 isoform 2 {ECO:0000313|EMBL:JAB07092.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035511}  [Source:UniProtKB/TrEMBL;Acc:F7I8L7]
ENSCJAG00000004227	KNOWN	protein_coding	MPP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	141162166	141193530	R	55 kDa erythrocyte membrane protein isoform 1 {ECO:0000313|EMBL:JAB02531.1}; Palmitoylated membrane protein 1 (Predicted) {ECO:0000313|EMBL:ABZ10502.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007694}  [Source:UniProtKB/TrEMBL;Acc:B0KWU3]
ENSCJAG00000006609	KNOWN_BY_PROJECTION	protein_coding	FCRL4	chromosome:C_jacchus3.2.1:18:1:47448759:1	11567363	11592992	R	Fc receptor-like 4 [Source:HGNC Symbol;Acc:HGNC:18507]
ENSCJAG00000019161	KNOWN_BY_PROJECTION	protein_coding	SLC38A6	chromosome:C_jacchus3.2.1:10:1:132174527:1	85992474	86065065	D	solute carrier family 38, member 6 [Source:HGNC Symbol;Acc:HGNC:19863]
ENSCJAG00000019197	NOVEL	protein_coding	ENSCJAG00000019197	chromosome:C_jacchus3.2.1:10:1:132174527:1	86241165	86242275	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035637}  [Source:UniProtKB/TrEMBL;Acc:F7H7W9]
ENSCJAG00000021879	NOVEL	pseudogene	ENSCJAG00000021879	chromosome:C_jacchus3.2.1:10:1:132174527:1	86282658	86283710	R	<no descrition>
ENSCJAG00000018299	KNOWN_BY_PROJECTION	protein_coding	NPB	chromosome:C_jacchus3.2.1:5:1:159171411:1	131016312	131017019	D	neuropeptide B [Source:HGNC Symbol;Acc:HGNC:30099]
ENSCJAG00000019178	KNOWN	protein_coding	PRKCH	chromosome:C_jacchus3.2.1:10:1:132174527:1	86323259	86569209	D	Protein kinase C eta type {ECO:0000256|PIRNR:PIRNR000551}  [Source:UniProtKB/TrEMBL;Acc:F7HD36]
ENSCJAG00000018279	KNOWN_BY_PROJECTION	protein_coding	PCYT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	131019620	131026389	R	phosphate cytidylyltransferase 2, ethanolamine [Source:HGNC Symbol;Acc:HGNC:8756]
ENSCJAG00000009670	NOVEL	pseudogene	ENSCJAG00000009670	chromosome:C_jacchus3.2.1:2:1:204313951:1	108969783	108971523	R	<no descrition>
ENSCJAG00000009679	KNOWN_BY_PROJECTION	protein_coding	RGMB	chromosome:C_jacchus3.2.1:2:1:204313951:1	108992901	109018619	R	repulsive guidance molecule family member b [Source:HGNC Symbol;Acc:HGNC:26896]
ENSCJAG00000009697	KNOWN	protein_coding	RIOK2	chromosome:C_jacchus3.2.1:2:1:204313951:1	110478820	110505057	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017772}  [Source:UniProtKB/TrEMBL;Acc:F7I7F9]
ENSCJAG00000013638	KNOWN_BY_PROJECTION	protein_coding	RASGRP4	chromosome:C_jacchus3.2.1:22:1:49145316:1	31700949	31722183	R	RAS guanyl releasing protein 4 [Source:HGNC Symbol;Acc:HGNC:18958]
ENSCJAG00000006170	KNOWN	protein_coding	ECE1	chromosome:C_jacchus3.2.1:7:1:155834243:1	55266049	55331150	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043906}  [Source:UniProtKB/TrEMBL;Acc:F7HY69]
ENSCJAG00000009711	KNOWN	protein_coding	LIX1	chromosome:C_jacchus3.2.1:2:1:204313951:1	110524926	110573538	D	Protein limb expression 1 homolog {ECO:0000313|EMBL:JAB18986.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017794}  [Source:UniProtKB/TrEMBL;Acc:F7I554]
ENSCJAG00000006625	KNOWN_BY_PROJECTION	protein_coding	FCRL3	chromosome:C_jacchus3.2.1:18:1:47448759:1	11640490	11658361	R	Fc receptor-like 3 [Source:HGNC Symbol;Acc:HGNC:18506]
ENSCJAG00000003214	KNOWN_BY_PROJECTION	protein_coding	SAMD3	chromosome:C_jacchus3.2.1:4:1:171630274:1	130432421	130643780	R	sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
ENSCJAG00000009724	KNOWN_BY_PROJECTION	protein_coding	LNPEP	chromosome:C_jacchus3.2.1:2:1:204313951:1	110645250	110743910	R	leucyl/cystinyl aminopeptidase [Source:HGNC Symbol;Acc:HGNC:6656]
ENSCJAG00000004256	KNOWN_BY_PROJECTION	protein_coding	SMIM9	chromosome:C_jacchus3.2.1:X:1:142054208:1	141202874	141209342	R	small integral membrane protein 9 [Source:HGNC Symbol;Acc:HGNC:41915]
ENSCJAG00000013497	NOVEL	protein_coding	ENSCJAG00000013497	chromosome:C_jacchus3.2.1:22:1:49145316:1	31779880	31841165	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025201}  [Source:UniProtKB/TrEMBL;Acc:F6Z0D1]
ENSCJAG00000004258	KNOWN_BY_PROJECTION	protein_coding	F8	chromosome:C_jacchus3.2.1:X:1:142054208:1	141215149	141392305	R	coagulation factor VIII, procoagulant component [Source:HGNC Symbol;Acc:HGNC:3546]
ENSCJAG00000018273	KNOWN_BY_PROJECTION	protein_coding	SIRT7	chromosome:C_jacchus3.2.1:5:1:159171411:1	131026872	131030502	R	sirtuin 7 [Source:HGNC Symbol;Acc:HGNC:14935]
ENSCJAG00000018272	KNOWN	protein_coding	MAFG	chromosome:C_jacchus3.2.1:5:1:159171411:1	131040619	131041194	R	Transcription factor MafG {ECO:0000313|EMBL:JAB10660.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033816}  [Source:UniProtKB/TrEMBL;Acc:F6RJE6]
ENSCJAG00000017992	KNOWN_BY_PROJECTION	protein_coding	GSS	chromosome:C_jacchus3.2.1:5:1:159171411:1	2312051	2340012	D	glutathione synthetase [Source:HGNC Symbol;Acc:HGNC:4624]
ENSCJAG00000004287	KNOWN_BY_PROJECTION	protein_coding	FUNDC2	chromosome:C_jacchus3.2.1:X:1:142054208:1	141395669	141421373	D	FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
ENSCJAG00000038061	KNOWN	protein_coding	CMC4	chromosome:C_jacchus3.2.1:X:1:142054208:1	141428316	141438338	R	Mature T-cell proliferation 1 neighbor protein {ECO:0000313|EMBL:JAB03032.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007783}  [Source:UniProtKB/TrEMBL;Acc:F6WXF4]
ENSCJAG00000004299	KNOWN	protein_coding	MTCP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	141430878	141438338	R	Mature T-cell proliferation 1 isoform p8 (Predicted) {ECO:0000313|EMBL:ABZ10506.1}; Protein p13 MTCP-1 {ECO:0000313|EMBL:JAB03033.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042561}  [Source:UniProtKB/TrEMBL;Acc:B0KWU7]
ENSCJAG00000018243	KNOWN_BY_PROJECTION	protein_coding	PYCR1	chromosome:C_jacchus3.2.1:5:1:159171411:1	131055547	131060088	R	pyrroline-5-carboxylate reductase 1 [Source:HGNC Symbol;Acc:HGNC:9721]
ENSCJAG00000004308	KNOWN	protein_coding	BRCC3	chromosome:C_jacchus3.2.1:X:1:142054208:1	141438590	141522439	D	Lys-63-specific deubiquitinase BRCC36 {ECO:0000313|Ensembl:ENSCJAP00000007835}  [Source:UniProtKB/TrEMBL;Acc:F7CNL8]
ENSCJAG00000006647	KNOWN_BY_PROJECTION	protein_coding	FCRL1	chromosome:C_jacchus3.2.1:18:1:47448759:1	11726535	11753080	R	Fc receptor-like 1 [Source:HGNC Symbol;Acc:HGNC:18509]
ENSCJAG00000009751	KNOWN_BY_PROJECTION	protein_coding	ERAP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	110760851	110803568	R	endoplasmic reticulum aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:29499]
ENSCJAG00000022599	KNOWN_BY_PROJECTION	protein_coding	MYADML2	chromosome:C_jacchus3.2.1:5:1:159171411:1	131065472	131067839	R	myeloid-associated differentiation marker-like 2 [Source:HGNC Symbol;Acc:HGNC:34548]
ENSCJAG00000018236	KNOWN_BY_PROJECTION	protein_coding	NOTUM	chromosome:C_jacchus3.2.1:5:1:159171411:1	131082502	131089135	R	notum pectinacetylesterase homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:27106]
ENSCJAG00000006148	KNOWN	protein_coding	ALPL	chromosome:C_jacchus3.2.1:7:1:155834243:1	55489046	55561739	D	alkaline phosphatase, tissue-nonspecific isozyme precursor  [Source:RefSeq peptide;Acc:NP_001171963]
ENSCJAG00000018159	KNOWN	protein_coding	RFNG	chromosome:C_jacchus3.2.1:5:1:159171411:1	131110965	131218583	R	Beta-1,3-N-acetylglucosaminyltransferase radical fringe {ECO:0000313|EMBL:JAB12800.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033582}  [Source:UniProtKB/TrEMBL;Acc:F6SII8]
ENSCJAG00000006682	KNOWN_BY_PROJECTION	protein_coding	CD5L	chromosome:C_jacchus3.2.1:18:1:47448759:1	11768525	11779271	R	CD5 molecule-like [Source:HGNC Symbol;Acc:HGNC:1690]
ENSCJAG00000004338	KNOWN	protein_coding	VBP1	chromosome:C_jacchus3.2.1:X:1:142054208:1	141599177	141621616	D	Prefoldin subunit 3 {ECO:0000313|EMBL:JAB07693.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007860}; von Hippel-Lindau binding protein 1 (Predicted) {ECO:0000313|EMBL:ABZ10508.1}  [Source:UniProtKB/TrEMBL;Acc:B0KWU9]
ENSCJAG00000006686	KNOWN	protein_coding	KIRREL	chromosome:C_jacchus3.2.1:18:1:47448759:1	11882352	11991616	D	Kin of IRRE-like protein 1 {ECO:0000313|EMBL:JAB09672.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012541}  [Source:UniProtKB/TrEMBL;Acc:F7GXS0]
ENSCJAG00000004358	KNOWN	protein_coding	RAB39B	chromosome:C_jacchus3.2.1:X:1:142054208:1	141652565	141657038	R	RAB39B, member RAS oncogene family (Predicted) {ECO:0000313|EMBL:ABZ10509.1}; Ras-related protein Rab-39B {ECO:0000313|EMBL:JAB14940.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007883}  [Source:UniProtKB/TrEMBL;Acc:B0KWV0]
ENSCJAG00000018019	KNOWN_BY_PROJECTION	protein_coding	ACSS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	2342551	2389906	R	acyl-CoA synthetase short-chain family member 2 [Source:HGNC Symbol;Acc:HGNC:15814]
ENSCJAG00000004362	NOVEL	protein_coding	CLIC2	chromosome:C_jacchus3.2.1:X:1:142054208:1	141670073	141724137	R	Chloride intracellular channel 2 (Predicted) {ECO:0000313|EMBL:ABZ10510.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007898}  [Source:UniProtKB/TrEMBL;Acc:B0KWV1]
ENSCJAG00000019202	KNOWN_BY_PROJECTION	protein_coding	HIF1A	chromosome:C_jacchus3.2.1:10:1:132174527:1	86715724	86773015	D	hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) [Source:HGNC Symbol;Acc:HGNC:4910]
ENSCJAG00000021685	KNOWN_BY_PROJECTION	protein_coding	TMLHE	chromosome:C_jacchus3.2.1:X:1:142054208:1	141794999	141845167	R	trimethyllysine hydroxylase, epsilon [Source:HGNC Symbol;Acc:HGNC:18308]
ENSCJAG00000034620	NOVEL	protein_coding	ENSCJAG00000034620	chromosome:C_jacchus3.2.1:X:1:142054208:1	141978512	141982126	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009863}  [Source:UniProtKB/TrEMBL;Acc:F7F6P4]
ENSCJAG00000032761	NOVEL	protein_coding	ENSCJAG00000032761	scaffold:C_jacchus3.2.1:GL286450.1:1:474672:1	433415	436432	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048447}  [Source:UniProtKB/TrEMBL;Acc:H9KYC1]
ENSCJAG00000003712	NOVEL	pseudogene	ENSCJAG00000003712	scaffold:C_jacchus3.2.1:GL286325.1:1:25325:1	13673	14145	D	<no descrition>
ENSCJAG00000009832	KNOWN_BY_PROJECTION	protein_coding	ERAP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	110883127	110972907	D	endoplasmic reticulum aminopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:18173]
ENSCJAG00000018095	KNOWN	protein_coding	GGT7	chromosome:C_jacchus3.2.1:5:1:159171411:1	2394912	2424791	D	Gamma-glutamyltransferase 7 {ECO:0000313|EMBL:JAB08285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033528}  [Source:UniProtKB/TrEMBL;Acc:F6U244]
ENSCJAG00000018216	NOVEL	protein_coding	ENSCJAG00000018216	chromosome:C_jacchus3.2.1:5:1:159171411:1	131112791	131160438	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033732}  [Source:UniProtKB/TrEMBL;Acc:F6TET8]
ENSCJAG00000035074	NOVEL	pseudogene	ENSCJAG00000035074	scaffold:C_jacchus3.2.1:GL287384.1:1:4913:1	3826	4288	R	<no descrition>
ENSCJAG00000013731	NOVEL	protein_coding	ENSCJAG00000013731	scaffold:C_jacchus3.2.1:ACFV01176866.1:1:34792:1	29742	30923	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025242}  [Source:UniProtKB/TrEMBL;Acc:H9KX12]
ENSCJAG00000018201	KNOWN_BY_PROJECTION	protein_coding	LRRC45	chromosome:C_jacchus3.2.1:5:1:159171411:1	131166739	131175347	D	leucine rich repeat containing 45 [Source:HGNC Symbol;Acc:HGNC:28302]
ENSCJAG00000000725	NOVEL	protein_coding	ENSCJAG00000000725	scaffold:C_jacchus3.2.1:GL284729.1:1:15442:1	6693	8203	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001232}  [Source:UniProtKB/TrEMBL;Acc:H9KVM2]
ENSCJAG00000005063	NOVEL	pseudogene	ENSCJAG00000005063	scaffold:C_jacchus3.2.1:ACFV01188414.1:1:5322:1	649	848	R	<no descrition>
ENSCJAG00000018723	NOVEL	protein_coding	ENSCJAG00000018723	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	16182	19573	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034784}  [Source:UniProtKB/TrEMBL;Acc:H9KXF0]
ENSCJAG00000018194	KNOWN	protein_coding	RAC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	131176188	131178379	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033666}  [Source:UniProtKB/TrEMBL;Acc:F6QDS2]
ENSCJAG00000007611	NOVEL	pseudogene	ENSCJAG00000007611	scaffold:C_jacchus3.2.1:ACFV01170646.1:1:96291:1	21382	22268	D	<no descrition>
ENSCJAG00000007616	NOVEL	protein_coding	ENSCJAG00000007616	scaffold:C_jacchus3.2.1:ACFV01170646.1:1:96291:1	41184	42639	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014115}  [Source:UniProtKB/TrEMBL;Acc:H9KWE5]
ENSCJAG00000006124	KNOWN_BY_PROJECTION	protein_coding	RAP1GAP	chromosome:C_jacchus3.2.1:7:1:155834243:1	55580837	55605776	R	RAP1 GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:9858]
ENSCJAG00000006783	NOVEL	protein_coding	ENSCJAG00000006783	chromosome:C_jacchus3.2.1:18:1:47448759:1	11956223	11957804	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046198}  [Source:UniProtKB/TrEMBL;Acc:F6VAC7]
ENSCJAG00000018059	KNOWN_BY_PROJECTION	protein_coding	FASN	chromosome:C_jacchus3.2.1:5:1:159171411:1	131181023	131265764	R	fatty acid synthase [Source:HGNC Symbol;Acc:HGNC:3594]
ENSCJAG00000009882	KNOWN_BY_PROJECTION	protein_coding	CAST	chromosome:C_jacchus3.2.1:2:1:204313951:1	110961753	111078863	R	calpastatin [Source:HGNC Symbol;Acc:HGNC:1515]
ENSCJAG00000018049	KNOWN	protein_coding	NCOA6	chromosome:C_jacchus3.2.1:5:1:159171411:1	2442285	2559400	D	Nuclear receptor coactivator 6 isoform 1 {ECO:0000313|EMBL:JAB45504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033430}  [Source:UniProtKB/TrEMBL;Acc:F6RB39]
ENSCJAG00000006794	NOVEL	pseudogene	ENSCJAG00000006794	chromosome:C_jacchus3.2.1:18:1:47448759:1	11992094	11992704	D	<no descrition>
ENSCJAG00000019003	KNOWN_BY_PROJECTION	protein_coding	CD1D	chromosome:C_jacchus3.2.1:18:1:47448759:1	12062249	12067442	D	CD1d molecule [Source:HGNC Symbol;Acc:HGNC:1637]
ENSCJAG00000006482	KNOWN_BY_PROJECTION	protein_coding	CD1C	chromosome:C_jacchus3.2.1:18:1:47448759:1	12081604	12128671	D	CD1c molecule [Source:HGNC Symbol;Acc:HGNC:1636]
ENSCJAG00000013655	NOVEL	protein_coding	ENSCJAG00000013655	chromosome:C_jacchus3.2.1:22:1:49145316:1	31876354	31896210	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039254}  [Source:UniProtKB/TrEMBL;Acc:F7FER6]
ENSCJAG00000013713	KNOWN_BY_PROJECTION	protein_coding	MAP4K1	chromosome:C_jacchus3.2.1:22:1:49145316:1	31896549	31921680	R	mitogen-activated protein kinase kinase kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:6863]
ENSCJAG00000006494	NOVEL	protein_coding	ENSCJAG00000006494	chromosome:C_jacchus3.2.1:18:1:47448759:1	12081887	12085062	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011997}  [Source:UniProtKB/TrEMBL;Acc:F7EU86]
ENSCJAG00000013760	KNOWN	protein_coding	ENSCJAG00000013760	chromosome:C_jacchus3.2.1:22:1:49145316:1	31925058	31945848	D	Eukaryotic translation initiation factor 3 subunit K {ECO:0000256|HAMAP-Rule:MF_03010}  [Source:UniProtKB/TrEMBL;Acc:F7BZF5]
ENSCJAG00000005962	KNOWN	protein_coding	USP48	chromosome:C_jacchus3.2.1:7:1:155834243:1	55657883	55764634	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011228}  [Source:UniProtKB/TrEMBL;Acc:F7ISN6]
ENSCJAG00000032097	NOVEL	protein_coding	ENSCJAG00000032097	chromosome:C_jacchus3.2.1:18:1:47448759:1	12091264	12092302	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046248}  [Source:UniProtKB/TrEMBL;Acc:F7BBT6]
ENSCJAG00000006465	KNOWN_BY_PROJECTION	protein_coding	CD1B	chromosome:C_jacchus3.2.1:18:1:47448759:1	12141837	12145424	R	CD1b molecule [Source:HGNC Symbol;Acc:HGNC:1635]
ENSCJAG00000006446	KNOWN_BY_PROJECTION	protein_coding	CD1E	chromosome:C_jacchus3.2.1:18:1:47448759:1	12154689	12158384	D	CD1e molecule [Source:HGNC Symbol;Acc:HGNC:1638]
ENSCJAG00000013777	KNOWN_BY_PROJECTION	protein_coding	ACTN4	chromosome:C_jacchus3.2.1:22:1:49145316:1	31956841	32040585	D	actinin, alpha 4 [Source:HGNC Symbol;Acc:HGNC:166]
ENSCJAG00000018123	KNOWN_BY_PROJECTION	protein_coding	GPS1	chromosome:C_jacchus3.2.1:5:1:159171411:1	131218753	131223769	D	G protein pathway suppressor 1 [Source:HGNC Symbol;Acc:HGNC:4549]
ENSCJAG00000018104	NOVEL	protein_coding	ENSCJAG00000018104	chromosome:C_jacchus3.2.1:5:1:159171411:1	131224494	131233887	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033493}  [Source:UniProtKB/TrEMBL;Acc:F6Q471]
ENSCJAG00000013829	KNOWN_BY_PROJECTION	protein_coding	CAPN12	chromosome:C_jacchus3.2.1:22:1:49145316:1	32041563	32054034	R	calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
ENSCJAG00000006354	KNOWN_BY_PROJECTION	protein_coding	SPTA1	chromosome:C_jacchus3.2.1:18:1:47448759:1	12247273	12434849	R	spectrin, alpha, erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11272]
ENSCJAG00000013880	NOVEL	protein_coding	ENSCJAG00000013880	chromosome:C_jacchus3.2.1:22:1:49145316:1	32077107	32079632	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F6ZXI3]
ENSCJAG00000031573	NOVEL	pseudogene	ENSCJAG00000031573	chromosome:C_jacchus3.2.1:5:1:159171411:1	2499204	2499651	D	<no descrition>
ENSCJAG00000018135	KNOWN_BY_PROJECTION	protein_coding	TP53INP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	2565378	2574653	R	tumor protein p53 inducible nuclear protein 2 [Source:HGNC Symbol;Acc:HGNC:16104]
ENSCJAG00000003205	KNOWN	protein_coding	TMEM200A	chromosome:C_jacchus3.2.1:4:1:171630274:1	130644087	130731599	D	Transmembrane protein 200A {ECO:0000313|EMBL:JAB03178.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005846}  [Source:UniProtKB/TrEMBL;Acc:F7HRG4]
ENSCJAG00000018152	KNOWN_BY_PROJECTION	protein_coding	PIGU	chromosome:C_jacchus3.2.1:5:1:159171411:1	2611522	2716409	D	phosphatidylinositol glycan anchor biosynthesis, class U [Source:HGNC Symbol;Acc:HGNC:15791]
ENSCJAG00000013884	NOVEL	protein_coding	ENSCJAG00000013884	chromosome:C_jacchus3.2.1:22:1:49145316:1	32101366	32103160	D	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F6ZF27]
ENSCJAG00000003171	KNOWN_BY_PROJECTION	protein_coding	EPB41L2	chromosome:C_jacchus3.2.1:4:1:171630274:1	131189270	131311447	R	erythrocyte membrane protein band 4.1-like 2 [Source:HGNC Symbol;Acc:HGNC:3379]
ENSCJAG00000018187	NOVEL	pseudogene	ENSCJAG00000018187	chromosome:C_jacchus3.2.1:5:1:159171411:1	2676649	2677110	D	<no descrition>
ENSCJAG00000018190	KNOWN	protein_coding	MAP1LC3A	chromosome:C_jacchus3.2.1:5:1:159171411:1	2716637	2726674	R	Microtubule-associated proteins 1A/1B light chain 3A isoform a {ECO:0000313|EMBL:JAB41705.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033652}  [Source:UniProtKB/TrEMBL;Acc:F6QPF6]
ENSCJAG00000032113	NOVEL	pseudogene	ENSCJAG00000032113	chromosome:C_jacchus3.2.1:7:1:155834243:1	55739717	55740162	D	<no descrition>
ENSCJAG00000018199	KNOWN	protein_coding	DYNLRB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	2736865	2768761	R	Dynein light chain roadblock-type 1 {ECO:0000313|EMBL:JAB34322.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040554}  [Source:UniProtKB/TrEMBL;Acc:F7IQZ4]
ENSCJAG00000005940	KNOWN_BY_PROJECTION	protein_coding	HSPG2	chromosome:C_jacchus3.2.1:7:1:155834243:1	55812337	55888092	R	heparan sulfate proteoglycan 2 [Source:HGNC Symbol;Acc:HGNC:5273]
ENSCJAG00000018041	KNOWN_BY_PROJECTION	protein_coding	CCDC57	chromosome:C_jacchus3.2.1:5:1:159171411:1	131269874	131397666	R	coiled-coil domain containing 57 [Source:HGNC Symbol;Acc:HGNC:27564]
ENSCJAG00000013905	KNOWN	protein_coding	LGALS4	chromosome:C_jacchus3.2.1:22:1:49145316:1	32105982	32117275	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F6X559]
ENSCJAG00000034010	NOVEL	protein_coding	ENSCJAG00000034010	chromosome:C_jacchus3.2.1:5:1:159171411:1	131282206	131282913	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030483}  [Source:UniProtKB/TrEMBL;Acc:F6ZPS7]
ENSCJAG00000018034	KNOWN	protein_coding	SLC16A3	chromosome:C_jacchus3.2.1:5:1:159171411:1	131429251	131432674	D	Monocarboxylate transporter 4 {ECO:0000313|EMBL:JAB06618.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033325}  [Source:UniProtKB/TrEMBL;Acc:F6U4G6]
ENSCJAG00000017926	KNOWN	protein_coding	NARF	chromosome:C_jacchus3.2.1:5:1:159171411:1	131429681	131898951	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033114}  [Source:UniProtKB/TrEMBL;Acc:F6SX80]
ENSCJAG00000013926	KNOWN	protein_coding	ECH1	chromosome:C_jacchus3.2.1:22:1:49145316:1	32120218	32130641	R	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial {ECO:0000313|EMBL:JAB04941.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025587}  [Source:UniProtKB/TrEMBL;Acc:F6VZW7]
ENSCJAG00000017987	KNOWN	protein_coding	CSNK1D	chromosome:C_jacchus3.2.1:5:1:159171411:1	131437503	131464766	R	Casein kinase I isoform delta isoform 2 {ECO:0000313|EMBL:JAB03907.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033264}  [Source:UniProtKB/TrEMBL;Acc:F6QSB7]
ENSCJAG00000003157	KNOWN	protein_coding	AKAP7	chromosome:C_jacchus3.2.1:4:1:171630274:1	131489887	131641997	D	A-kinase anchor protein 7 isoform gamma isoform gamma {ECO:0000313|EMBL:JAB01837.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043553}  [Source:UniProtKB/TrEMBL;Acc:F7IRN7]
ENSCJAG00000003166	NOVEL	protein_coding	ENSCJAG00000003166	chromosome:C_jacchus3.2.1:4:1:171630274:1	131541132	131542101	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005769}  [Source:UniProtKB/TrEMBL;Acc:F7I9W8]
ENSCJAG00000018204	KNOWN_BY_PROJECTION	protein_coding	ITCH	chromosome:C_jacchus3.2.1:5:1:159171411:1	2772504	2908316	R	itchy E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:13890]
ENSCJAG00000003140	KNOWN_BY_PROJECTION	protein_coding	ARG1	chromosome:C_jacchus3.2.1:4:1:171630274:1	131908522	131919936	D	arginase 1 [Source:HGNC Symbol;Acc:HGNC:663]
ENSCJAG00000022045	KNOWN_BY_PROJECTION	protein_coding	OR6P1	chromosome:C_jacchus3.2.1:18:1:47448759:1	12284367	12302136	R	olfactory receptor, family 6, subfamily P, member 1 [Source:HGNC Symbol;Acc:HGNC:15036]
ENSCJAG00000013931	KNOWN	protein_coding	HNRNPL	chromosome:C_jacchus3.2.1:22:1:49145316:1	32134796	32151128	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042166}  [Source:UniProtKB/TrEMBL;Acc:F6V7W4]
ENSCJAG00000022043	KNOWN_BY_PROJECTION	protein_coding	OR10Z1	chromosome:C_jacchus3.2.1:18:1:47448759:1	12331568	12332987	D	olfactory receptor, family 10, subfamily Z, member 1 [Source:HGNC Symbol;Acc:HGNC:14996]
ENSCJAG00000007620	NOVEL	protein_coding	ENSCJAG00000007620	scaffold:C_jacchus3.2.1:ACFV01170646.1:1:96291:1	43663	45099	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004919}  [Source:UniProtKB/TrEMBL;Acc:H9KVV4]
ENSCJAG00000006349	KNOWN_BY_PROJECTION	protein_coding	OR6K2	chromosome:C_jacchus3.2.1:18:1:47448759:1	12444829	12446568	R	olfactory receptor, family 6, subfamily K, member 2 [Source:HGNC Symbol;Acc:HGNC:15029]
ENSCJAG00000006348	NOVEL	pseudogene	ENSCJAG00000006348	chromosome:C_jacchus3.2.1:18:1:47448759:1	12458352	12459353	R	<no descrition>
ENSCJAG00000006339	KNOWN_BY_PROJECTION	protein_coding	MNDA	chromosome:C_jacchus3.2.1:18:1:47448759:1	12528212	12545359	D	myeloid cell nuclear differentiation antigen [Source:HGNC Symbol;Acc:HGNC:7183]
ENSCJAG00000016407	NOVEL	protein_coding	ENSCJAG00000016407	scaffold:C_jacchus3.2.1:ACFV01170646.1:1:96291:1	54235	55187	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003997}  [Source:UniProtKB/TrEMBL;Acc:H9KVR8]
ENSCJAG00000007629	NOVEL	protein_coding	ENSCJAG00000007629	scaffold:C_jacchus3.2.1:ACFV01170646.1:1:96291:1	61949	64427	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014137}  [Source:UniProtKB/TrEMBL;Acc:H9KWE7]
ENSCJAG00000007631	NOVEL	pseudogene	ENSCJAG00000007631	scaffold:C_jacchus3.2.1:ACFV01170646.1:1:96291:1	83154	84608	R	<no descrition>
ENSCJAG00000012408	NOVEL	protein_coding	ENSCJAG00000012408	chromosome:C_jacchus3.2.1:4:1:171630274:1	41457	42250	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046536}  [Source:UniProtKB/TrEMBL;Acc:F7I642]
ENSCJAG00000012405	NOVEL	pseudogene	ENSCJAG00000012405	chromosome:C_jacchus3.2.1:4:1:171630274:1	56872	57238	D	<no descrition>
ENSCJAG00000012397	KNOWN	protein_coding	ZNF311	chromosome:C_jacchus3.2.1:4:1:171630274:1	136072	145428	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022710}; Zinc finger protein 311 {ECO:0000313|EMBL:JAB02189.1}  [Source:UniProtKB/TrEMBL;Acc:F7IHR7]
ENSCJAG00000006335	KNOWN_BY_PROJECTION	protein_coding	IFI16	chromosome:C_jacchus3.2.1:18:1:47448759:1	12554017	12646497	D	interferon, gamma-inducible protein 16 [Source:HGNC Symbol;Acc:HGNC:5395]
ENSCJAG00000012387	NOVEL	protein_coding	ENSCJAG00000012387	chromosome:C_jacchus3.2.1:4:1:171630274:1	170862	171883	R	<no descrition>
ENSCJAG00000012384	NOVEL	protein_coding	ENSCJAG00000012384	chromosome:C_jacchus3.2.1:4:1:171630274:1	174925	175309	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022676}  [Source:UniProtKB/TrEMBL;Acc:F7IPY1]
ENSCJAG00000012363	KNOWN	protein_coding	TRIM27	chromosome:C_jacchus3.2.1:4:1:171630274:1	192616	218348	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022668}; Zinc finger protein RFP {ECO:0000313|EMBL:JAB06702.1}  [Source:UniProtKB/TrEMBL;Acc:F7IS92]
ENSCJAG00000018032	NOVEL	pseudogene	ENSCJAG00000018032	chromosome:C_jacchus3.2.1:5:1:159171411:1	131450871	131451883	R	<no descrition>
ENSCJAG00000017984	NOVEL	protein_coding	ENSCJAG00000017984	chromosome:C_jacchus3.2.1:5:1:159171411:1	131469610	131470194	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033204}  [Source:UniProtKB/TrEMBL;Acc:F6RCX6]
ENSCJAG00000017979	KNOWN_BY_PROJECTION	protein_coding	CD7	chromosome:C_jacchus3.2.1:5:1:159171411:1	131515847	131517771	R	CD7 molecule [Source:HGNC Symbol;Acc:HGNC:1695]
ENSCJAG00000003056	KNOWN	protein_coding	MED23	chromosome:C_jacchus3.2.1:4:1:171630274:1	131909352	131973610	R	Mediator of RNA polymerase II transcription subunit 23 isoform a {ECO:0000313|EMBL:JAB10564.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005627}  [Source:UniProtKB/TrEMBL;Acc:F7I2W4]
ENSCJAG00000017974	KNOWN_BY_PROJECTION	protein_coding	SECTM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	131520878	131525437	R	secreted and transmembrane 1 [Source:HGNC Symbol;Acc:HGNC:10707]
ENSCJAG00000017971	KNOWN_BY_PROJECTION	protein_coding	UTS2R	chromosome:C_jacchus3.2.1:5:1:159171411:1	131591073	131592243	D	urotensin 2 receptor [Source:HGNC Symbol;Acc:HGNC:4468]
ENSCJAG00000017955	KNOWN_BY_PROJECTION	protein_coding	OGFOD3	chromosome:C_jacchus3.2.1:5:1:159171411:1	131607602	131635638	R	2-oxoglutarate and iron-dependent oxygenase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26174]
ENSCJAG00000012383	NOVEL	pseudogene	ENSCJAG00000012383	chromosome:C_jacchus3.2.1:4:1:171630274:1	197309	197786	R	<no descrition>
ENSCJAG00000012361	NOVEL	protein_coding	ENSCJAG00000012361	chromosome:C_jacchus3.2.1:4:1:171630274:1	257319	259018	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022629}  [Source:UniProtKB/TrEMBL;Acc:F7HWN2]
ENSCJAG00000035023	NOVEL	pseudogene	ENSCJAG00000035023	chromosome:C_jacchus3.2.1:4:1:171630274:1	311815	312555	D	<no descrition>
ENSCJAG00000012358	NOVEL	protein_coding	ENSCJAG00000012358	chromosome:C_jacchus3.2.1:4:1:171630274:1	330684	331909	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052217}  [Source:UniProtKB/TrEMBL;Acc:F7ILI2]
ENSCJAG00000006327	KNOWN_BY_PROJECTION	protein_coding	AIM2	chromosome:C_jacchus3.2.1:18:1:47448759:1	12652485	12663999	R	absent in melanoma 2 [Source:HGNC Symbol;Acc:HGNC:357]
ENSCJAG00000018566	KNOWN	protein_coding	ZBED9	chromosome:C_jacchus3.2.1:4:1:171630274:1	457481	468818	D	SCAN domain-containing protein 3 {ECO:0000313|EMBL:JAB45613.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034493}  [Source:UniProtKB/TrEMBL;Acc:F7IK96]
ENSCJAG00000018607	KNOWN_BY_PROJECTION	protein_coding	GPX5	chromosome:C_jacchus3.2.1:4:1:171630274:1	500176	509682	R	glutathione peroxidase 5 [Source:HGNC Symbol;Acc:HGNC:4557]
ENSCJAG00000017945	KNOWN_BY_PROJECTION	protein_coding	HEXDC	chromosome:C_jacchus3.2.1:5:1:159171411:1	131635430	131661089	D	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing [Source:HGNC Symbol;Acc:HGNC:26307]
ENSCJAG00000005927	NOVEL	protein_coding	ENSCJAG00000005927	chromosome:C_jacchus3.2.1:7:1:155834243:1	55972528	55984077	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010914}  [Source:UniProtKB/TrEMBL;Acc:F7IJY4]
ENSCJAG00000018596	KNOWN_BY_PROJECTION	protein_coding	GPX6	chromosome:C_jacchus3.2.1:4:1:171630274:1	523021	532856	D	glutathione peroxidase 6 (olfactory) [Source:HGNC Symbol;Acc:HGNC:4558]
ENSCJAG00000006307	KNOWN	protein_coding	CADM3	chromosome:C_jacchus3.2.1:18:1:47448759:1	12817523	12847650	D	Cell adhesion molecule 3 isoform 1 {ECO:0000313|EMBL:JAB16671.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011647}  [Source:UniProtKB/TrEMBL;Acc:F7D5N0]
ENSCJAG00000006303	KNOWN	protein_coding	DARC	chromosome:C_jacchus3.2.1:18:1:47448759:1	12851032	12852803	D	Duffy antigen/chemokine receptor {ECO:0000313|EMBL:ADM53674.1}; Duffy antigen/chemokine receptor isoform b {ECO:0000313|EMBL:JAB09732.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011597}  [Source:UniProtKB/TrEMBL;Acc:E0XJE0]
ENSCJAG00000018616	KNOWN_BY_PROJECTION	protein_coding	ZSCAN23	chromosome:C_jacchus3.2.1:4:1:171630274:1	585994	588215	D	zinc finger and SCAN domain containing 23 [Source:HGNC Symbol;Acc:HGNC:21193]
ENSCJAG00000006292	KNOWN	protein_coding	FCER1A	chromosome:C_jacchus3.2.1:18:1:47448759:1	12953403	12959182	D	Callithrix jacchus high affinity immunoglobulin epsilon receptor subunit alpha-like (LOC100398082), mRNA. [Source:RefSeq mRNA;Acc:NM_001267729]
ENSCJAG00000018619	KNOWN_BY_PROJECTION	protein_coding	ZSCAN12	chromosome:C_jacchus3.2.1:4:1:171630274:1	622728	644384	D	zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:HGNC:13172]
ENSCJAG00000018623	NOVEL	protein_coding	ENSCJAG00000018623	chromosome:C_jacchus3.2.1:4:1:171630274:1	651197	659968	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034601}  [Source:UniProtKB/TrEMBL;Acc:F7HWM8]
ENSCJAG00000005912	KNOWN	protein_coding	ENSCJAG00000005912	chromosome:C_jacchus3.2.1:7:1:155834243:1	56032729	56068295	D	Cell division control protein 42 homolog isoform 2 {ECO:0000313|EMBL:JAB11599.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010883}  [Source:UniProtKB/TrEMBL;Acc:F7HMJ4]
ENSCJAG00000017943	KNOWN	protein_coding	C17ORF62	chromosome:C_jacchus3.2.1:5:1:159171411:1	131663166	131667595	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033122}; Uncharacterized protein C17orf62 isoform a {ECO:0000313|EMBL:JAB09272.1}  [Source:UniProtKB/TrEMBL;Acc:F6SWT3]
ENSCJAG00000034753	NOVEL	pseudogene	ENSCJAG00000034753	chromosome:C_jacchus3.2.1:18:1:47448759:1	12964891	12965816	R	<no descrition>
ENSCJAG00000018628	KNOWN	protein_coding	ZSCAN31	chromosome:C_jacchus3.2.1:4:1:171630274:1	679647	691435	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034609}; Zinc finger protein 323 isoform 1 {ECO:0000313|EMBL:JAB02074.1}  [Source:UniProtKB/TrEMBL;Acc:F7HWM1]
ENSCJAG00000006290	NOVEL	pseudogene	ENSCJAG00000006290	chromosome:C_jacchus3.2.1:18:1:47448759:1	12993807	12994738	D	<no descrition>
ENSCJAG00000018636	KNOWN	protein_coding	PGBD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	707207	733524	R	PiggyBac transposable element-derived protein 1 {ECO:0000313|EMBL:JAB04543.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034614}  [Source:UniProtKB/TrEMBL;Acc:F7HTU7]
ENSCJAG00000017923	KNOWN_BY_PROJECTION	protein_coding	FOXK2	chromosome:C_jacchus3.2.1:5:1:159171411:1	131774529	131814877	D	forkhead box K2 [Source:HGNC Symbol;Acc:HGNC:6036]
ENSCJAG00000006288	NOVEL	protein_coding	ENSCJAG00000006288	chromosome:C_jacchus3.2.1:18:1:47448759:1	13052038	13053636	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050968}  [Source:UniProtKB/TrEMBL;Acc:F6T0X2]
ENSCJAG00000006286	NOVEL	pseudogene	ENSCJAG00000006286	chromosome:C_jacchus3.2.1:18:1:47448759:1	13120250	13121176	R	<no descrition>
ENSCJAG00000006283	NOVEL	protein_coding	ENSCJAG00000006283	chromosome:C_jacchus3.2.1:18:1:47448759:1	13135794	13136635	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011558}  [Source:UniProtKB/TrEMBL;Acc:F7I8N3]
ENSCJAG00000017906	KNOWN	protein_coding	WDR45B	chromosome:C_jacchus3.2.1:5:1:159171411:1	131827183	131861397	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033074}  [Source:UniProtKB/TrEMBL;Acc:F6TJ03]
ENSCJAG00000018303	NOVEL	protein_coding	ENSCJAG00000018303	chromosome:C_jacchus3.2.1:5:1:159171411:1	2962155	2997059	D	<no descrition>
ENSCJAG00000018640	KNOWN_BY_PROJECTION	protein_coding	ZSCAN26	chromosome:C_jacchus3.2.1:4:1:171630274:1	743161	753213	R	zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
ENSCJAG00000013888	KNOWN_BY_PROJECTION	protein_coding	RINL	chromosome:C_jacchus3.2.1:22:1:49145316:1	32168095	32170783	R	Ras and Rab interactor-like [Source:HGNC Symbol;Acc:HGNC:24795]
ENSCJAG00000013969	KNOWN	protein_coding	SIRT2	chromosome:C_jacchus3.2.1:22:1:49145316:1	32182014	32212320	R	NAD-dependent deacetylase sirtuin 2-like protein {ECO:0000313|EMBL:ABQ22391.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044262}  [Source:UniProtKB/TrEMBL;Acc:A6MK00]
ENSCJAG00000018647	KNOWN_BY_PROJECTION	protein_coding	NKAPL	chromosome:C_jacchus3.2.1:4:1:171630274:1	759617	760800	R	NFKB activating protein-like [Source:HGNC Symbol;Acc:HGNC:21584]
ENSCJAG00000018650	KNOWN_BY_PROJECTION	protein_coding	ZKSCAN4	chromosome:C_jacchus3.2.1:4:1:171630274:1	769323	776052	D	zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
ENSCJAG00000006279	KNOWN_BY_PROJECTION	protein_coding	APCS	chromosome:C_jacchus3.2.1:18:1:47448759:1	13161833	13162883	D	amyloid P component, serum [Source:HGNC Symbol;Acc:HGNC:584]
ENSCJAG00000006271	KNOWN_BY_PROJECTION	protein_coding	CRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	13277157	13279369	R	C-reactive protein, pentraxin-related [Source:HGNC Symbol;Acc:HGNC:2367]
ENSCJAG00000006267	KNOWN	protein_coding	DUSP23	chromosome:C_jacchus3.2.1:18:1:47448759:1	13333571	13335099	D	Dual specificity protein phosphatase 23 {ECO:0000313|EMBL:JAB01678.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011530}  [Source:UniProtKB/TrEMBL;Acc:F7IB28]
ENSCJAG00000006247	KNOWN_BY_PROJECTION	protein_coding	FCRL6	chromosome:C_jacchus3.2.1:18:1:47448759:1	13355782	13363902	D	Fc receptor-like 6 [Source:HGNC Symbol;Acc:HGNC:31910]
ENSCJAG00000017902	KNOWN_BY_PROJECTION	protein_coding	RAB40B	chromosome:C_jacchus3.2.1:5:1:159171411:1	131875089	131884797	R	RAB40B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18284]
ENSCJAG00000034080	NOVEL	protein_coding	ENSCJAG00000034080	chromosome:C_jacchus3.2.1:5:1:159171411:1	131883957	131884702	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043999}  [Source:UniProtKB/TrEMBL;Acc:F7ILN9]
ENSCJAG00000006239	KNOWN_BY_PROJECTION	protein_coding	SLAMF8	chromosome:C_jacchus3.2.1:18:1:47448759:1	13384719	13393609	D	SLAM family member 8 [Source:HGNC Symbol;Acc:HGNC:21391]
ENSCJAG00000005892	KNOWN_BY_PROJECTION	protein_coding	WNT4	chromosome:C_jacchus3.2.1:7:1:155834243:1	56094997	56120973	R	wingless-type MMTV integration site family, member 4 [Source:HGNC Symbol;Acc:HGNC:12783]
ENSCJAG00000017895	KNOWN	protein_coding	FN3K	chromosome:C_jacchus3.2.1:5:1:159171411:1	131935644	131971585	D	Fructosamine-3-kinase {ECO:0000313|EMBL:JAB04192.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033037}  [Source:UniProtKB/TrEMBL;Acc:F6U657]
ENSCJAG00000006224	KNOWN_BY_PROJECTION	protein_coding	VSIG8	chromosome:C_jacchus3.2.1:18:1:47448759:1	13396438	13419720	R	V-set and immunoglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:32063]
ENSCJAG00000018327	KNOWN	protein_coding	ASIP	chromosome:C_jacchus3.2.1:5:1:159171411:1	3009994	3017239	R	Agouti-signaling protein  [Source:UniProtKB/Swiss-Prot;Acc:A1YL77]
ENSCJAG00000017857	KNOWN_BY_PROJECTION	protein_coding	TBCD	chromosome:C_jacchus3.2.1:5:1:159171411:1	131972670	132193029	D	tubulin folding cofactor D [Source:HGNC Symbol;Acc:HGNC:11581]
ENSCJAG00000005891	NOVEL	pseudogene	ENSCJAG00000005891	chromosome:C_jacchus3.2.1:7:1:155834243:1	56313689	56314185	R	<no descrition>
ENSCJAG00000005869	KNOWN	protein_coding	ZBTB40	chromosome:C_jacchus3.2.1:7:1:155834243:1	56444007	56526227	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010812}; Zinc finger and BTB domain-containing protein 40 {ECO:0000313|EMBL:JAB15344.1}  [Source:UniProtKB/TrEMBL;Acc:F7I182]
ENSCJAG00000006175	KNOWN_BY_PROJECTION	protein_coding	CFAP45	chromosome:C_jacchus3.2.1:18:1:47448759:1	13430408	13459263	R	cilia and flagella associated protein 45 [Source:HGNC Symbol;Acc:HGNC:17229]
ENSCJAG00000019219	KNOWN	protein_coding	SNAPC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	86790213	86821955	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035701}; snRNA-activating protein complex subunit 1 {ECO:0000313|EMBL:JAB07500.1}  [Source:UniProtKB/TrEMBL;Acc:F7GC39]
ENSCJAG00000018334	KNOWN	protein_coding	EIF2S2	chromosome:C_jacchus3.2.1:5:1:159171411:1	3200392	3223614	D	Eukaryotic translation initiation factor 2 subunit 2 {ECO:0000313|EMBL:JAB09038.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033987}  [Source:UniProtKB/TrEMBL;Acc:F6SFK4]
ENSCJAG00000019236	KNOWN	protein_coding	SYT16	chromosome:C_jacchus3.2.1:10:1:132174527:1	87029783	87138873	D	Synaptotagmin-16 {ECO:0000313|EMBL:JAB29478.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051609}  [Source:UniProtKB/TrEMBL;Acc:F7B0F6]
ENSCJAG00000017892	KNOWN	protein_coding	ZNF750	chromosome:C_jacchus3.2.1:5:1:159171411:1	132062339	132072298	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033021}; Zinc finger protein 750 {ECO:0000313|EMBL:JAB03546.1}  [Source:UniProtKB/TrEMBL;Acc:F6PLB7]
ENSCJAG00000018361	KNOWN	protein_coding	RALY	chromosome:C_jacchus3.2.1:5:1:159171411:1	3229291	3316168	R	RNA-binding protein Raly isoform 1 {ECO:0000313|EMBL:JAB10017.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042753}  [Source:UniProtKB/TrEMBL;Acc:F6V468]
ENSCJAG00000017834	KNOWN_BY_PROJECTION	protein_coding	METRNL	chromosome:C_jacchus3.2.1:5:1:159171411:1	132150167	132306875	D	meteorin, glial cell differentiation regulator-like [Source:HGNC Symbol;Acc:HGNC:27584]
ENSCJAG00000013991	KNOWN	protein_coding	NFKBIB	chromosome:C_jacchus3.2.1:22:1:49145316:1	32216830	32220172	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025722}  [Source:UniProtKB/TrEMBL;Acc:F6X3L6]
ENSCJAG00000017835	KNOWN_BY_PROJECTION	protein_coding	B3GNTL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	132193968	132263230	R	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 [Source:HGNC Symbol;Acc:HGNC:21727]
ENSCJAG00000013994	NOVEL	protein_coding	ENSCJAG00000013994	chromosome:C_jacchus3.2.1:22:1:49145316:1	32225856	32241941	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025764}  [Source:UniProtKB/TrEMBL;Acc:F6VDA5]
ENSCJAG00000019253	NOVEL	protein_coding	ENSCJAG00000019253	chromosome:C_jacchus3.2.1:10:1:132174527:1	87154350	87167054	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035731}  [Source:UniProtKB/TrEMBL;Acc:F7FLN1]
ENSCJAG00000014021	KNOWN_BY_PROJECTION	protein_coding	MRPS12	chromosome:C_jacchus3.2.1:22:1:49145316:1	32241729	32244219	D	mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
ENSCJAG00000006156	KNOWN	protein_coding	TAGLN2	chromosome:C_jacchus3.2.1:18:1:47448759:1	13477281	13485393	R	Transgelin-2 {ECO:0000313|EMBL:JAB16642.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011329}  [Source:UniProtKB/TrEMBL;Acc:F7IB81]
ENSCJAG00000019255	KNOWN	protein_coding	KCNH5	chromosome:C_jacchus3.2.1:10:1:132174527:1	87614017	88039488	R	Potassium voltage-gated channel subfamily H member 5 isoform 1 {ECO:0000313|EMBL:JAB24195.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035791}  [Source:UniProtKB/TrEMBL;Acc:F7E384]
ENSCJAG00000034930	NOVEL	protein_coding	ENSCJAG00000034930	chromosome:C_jacchus3.2.1:5:1:159171411:1	132725777	132728084	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046068}  [Source:UniProtKB/TrEMBL;Acc:F6ZB91]
ENSCJAG00000004452	KNOWN_BY_PROJECTION	protein_coding	PARP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	132823574	132913457	D	poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
ENSCJAG00000005832	KNOWN_BY_PROJECTION	protein_coding	EPHA8	chromosome:C_jacchus3.2.1:7:1:155834243:1	56563354	56601983	D	EPH receptor A8 [Source:HGNC Symbol;Acc:HGNC:3391]
ENSCJAG00000032831	KNOWN_BY_PROJECTION	protein_coding	FBXO17	chromosome:C_jacchus3.2.1:22:1:49145316:1	32246149	32300755	R	F-box protein 17 [Source:HGNC Symbol;Acc:HGNC:18754]
ENSCJAG00000005827	NOVEL	protein_coding	ENSCJAG00000005827	chromosome:C_jacchus3.2.1:7:1:155834243:1	56639698	56642748	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010697}  [Source:UniProtKB/TrEMBL;Acc:F7IS67]
ENSCJAG00000014024	NOVEL	protein_coding	ENSCJAG00000014024	chromosome:C_jacchus3.2.1:22:1:49145316:1	32249666	32250215	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025785}  [Source:UniProtKB/TrEMBL;Acc:F6URE7]
ENSCJAG00000014025	KNOWN_BY_PROJECTION	protein_coding	FBXO27	chromosome:C_jacchus3.2.1:22:1:49145316:1	32338620	32347770	R	F-box protein 27 [Source:HGNC Symbol;Acc:HGNC:18753]
ENSCJAG00000005820	KNOWN	protein_coding	C1QC	chromosome:C_jacchus3.2.1:7:1:155834243:1	56646926	56651332	D	Complement C1q subcomponent subunit C {ECO:0000313|EMBL:JAB02384.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010692}  [Source:UniProtKB/TrEMBL;Acc:F7IS76]
ENSCJAG00000006107	KNOWN_BY_PROJECTION	protein_coding	IGSF9	chromosome:C_jacchus3.2.1:18:1:47448759:1	13487391	13504662	R	immunoglobulin superfamily, member 9 [Source:HGNC Symbol;Acc:HGNC:18132]
ENSCJAG00000014028	NOVEL	protein_coding	ENSCJAG00000014028	chromosome:C_jacchus3.2.1:22:1:49145316:1	32400944	32424537	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025804}  [Source:UniProtKB/TrEMBL;Acc:F7BW71]
ENSCJAG00000005807	KNOWN_BY_PROJECTION	protein_coding	C1QB	chromosome:C_jacchus3.2.1:7:1:155834243:1	56656656	56665470	D	complement component 1, q subcomponent, B chain [Source:HGNC Symbol;Acc:HGNC:1242]
ENSCJAG00000005696	KNOWN_BY_PROJECTION	protein_coding	EPHB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	56711332	56926520	D	EPH receptor B2 [Source:HGNC Symbol;Acc:HGNC:3393]
ENSCJAG00000014040	KNOWN	protein_coding	PAK4	chromosome:C_jacchus3.2.1:22:1:49145316:1	32438267	32601542	D	Serine/threonine-protein kinase PAK 4 isoform 1 {ECO:0000313|EMBL:JAB09915.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025832}  [Source:UniProtKB/TrEMBL;Acc:F7AWJ1]
ENSCJAG00000006099	KNOWN_BY_PROJECTION	protein_coding	SLAMF9	chromosome:C_jacchus3.2.1:18:1:47448759:1	13512743	13515438	R	SLAM family member 9 [Source:HGNC Symbol;Acc:HGNC:18430]
ENSCJAG00000006096	KNOWN	protein_coding	PIGM	chromosome:C_jacchus3.2.1:18:1:47448759:1	13592966	13595301	R	GPI mannosyltransferase 1 {ECO:0000313|EMBL:JAB03521.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011199}  [Source:UniProtKB/TrEMBL;Acc:F7HX28]
ENSCJAG00000032472	KNOWN	protein_coding	KCNJ10	chromosome:C_jacchus3.2.1:18:1:47448759:1	13604292	13637752	R	ATP-sensitive inward rectifier potassium channel 10 {ECO:0000313|EMBL:JAB19031.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044773}  [Source:UniProtKB/TrEMBL;Acc:F7FVT3]
ENSCJAG00000006092	KNOWN_BY_PROJECTION	protein_coding	KCNJ9	chromosome:C_jacchus3.2.1:18:1:47448759:1	13653315	13656868	D	potassium channel, inwardly rectifying subfamily J, member 9 [Source:HGNC Symbol;Acc:HGNC:6270]
ENSCJAG00000005977	KNOWN_BY_PROJECTION	protein_coding	IGSF8	chromosome:C_jacchus3.2.1:18:1:47448759:1	13662902	13668854	R	immunoglobulin superfamily, member 8 [Source:HGNC Symbol;Acc:HGNC:17813]
ENSCJAG00000006022	NOVEL	protein_coding	ENSCJAG00000006022	chromosome:C_jacchus3.2.1:18:1:47448759:1	13688832	13773299	D	<no descrition>
ENSCJAG00000003044	KNOWN_BY_PROJECTION	protein_coding	ENPP3	chromosome:C_jacchus3.2.1:4:1:171630274:1	131994579	132087816	D	ectonucleotide pyrophosphatase/phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:3358]
ENSCJAG00000018423	KNOWN_BY_PROJECTION	protein_coding	ZNF341	chromosome:C_jacchus3.2.1:5:1:159171411:1	3308101	3561221	R	zinc finger protein 341 [Source:HGNC Symbol;Acc:HGNC:15992]
ENSCJAG00000004525	KNOWN	protein_coding	MPHOSPH8	chromosome:C_jacchus3.2.1:5:1:159171411:1	132942877	132997557	D	M-phase phosphoprotein 8 {ECO:0000313|EMBL:JAB04996.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008225}  [Source:UniProtKB/TrEMBL;Acc:F7IFM1]
ENSCJAG00000018397	KNOWN_BY_PROJECTION	protein_coding	CHMP4B	chromosome:C_jacchus3.2.1:5:1:159171411:1	3441852	3485191	R	charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:HGNC:16171]
ENSCJAG00000004554	KNOWN	protein_coding	PSPC1	chromosome:C_jacchus3.2.1:5:1:159171411:1	132998840	133107386	R	Paraspeckle component 1 {ECO:0000313|EMBL:JAB05987.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008299}  [Source:UniProtKB/TrEMBL;Acc:F7I3U8]
ENSCJAG00000014055	KNOWN	protein_coding	NCCRP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	32526466	32531366	D	Non-specific cytotoxic cell receptor protein 1 homolog {ECO:0000313|EMBL:JAB07849.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025842}  [Source:UniProtKB/TrEMBL;Acc:F7AVG6]
ENSCJAG00000019287	KNOWN	protein_coding	RHOJ	chromosome:C_jacchus3.2.1:10:1:132174527:1	88117138	88208574	D	Rho-related GTP-binding protein RhoJ {ECO:0000313|EMBL:JAB10557.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035797}  [Source:UniProtKB/TrEMBL;Acc:F7E349]
ENSCJAG00000006082	NOVEL	protein_coding	ENSCJAG00000006082	chromosome:C_jacchus3.2.1:18:1:47448759:1	13709481	13716003	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011187}  [Source:UniProtKB/TrEMBL;Acc:F7HX64]
ENSCJAG00000005691	KNOWN_BY_PROJECTION	protein_coding	LACTBL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	56964115	56974295	R	lactamase, beta-like 1 [Source:HGNC Symbol;Acc:HGNC:35445]
ENSCJAG00000005980	KNOWN_BY_PROJECTION	protein_coding	CASQ1	chromosome:C_jacchus3.2.1:18:1:47448759:1	13777106	13789254	D	calsequestrin 1 (fast-twitch, skeletal muscle) [Source:HGNC Symbol;Acc:HGNC:1512]
ENSCJAG00000005607	KNOWN	protein_coding	KDM1A	chromosome:C_jacchus3.2.1:7:1:155834243:1	57015778	57080377	D	Lysine-specific histone demethylase 1A isoform b {ECO:0000313|EMBL:JAB11378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010405}  [Source:UniProtKB/TrEMBL;Acc:F7HZ54]
ENSCJAG00000014061	NOVEL	protein_coding	ENSCJAG00000014061	chromosome:C_jacchus3.2.1:22:1:49145316:1	32545437	32547006	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025858}  [Source:UniProtKB/TrEMBL;Acc:F7ACE6]
ENSCJAG00000004581	NOVEL	pseudogene	ENSCJAG00000004581	chromosome:C_jacchus3.2.1:5:1:159171411:1	133142603	133143009	R	<no descrition>
ENSCJAG00000004584	KNOWN	protein_coding	ZMYM5	chromosome:C_jacchus3.2.1:5:1:159171411:1	133159262	133197764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008343}  [Source:UniProtKB/TrEMBL;Acc:F7HTX4]
ENSCJAG00000019288	KNOWN_BY_PROJECTION	protein_coding	GPHB5	chromosome:C_jacchus3.2.1:10:1:132174527:1	88226979	88231540	R	glycoprotein hormone beta 5 [Source:HGNC Symbol;Acc:HGNC:18055]
ENSCJAG00000014071	KNOWN_BY_PROJECTION	protein_coding	IFNL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	32583490	32585589	D	interferon, lambda 1 [Source:HGNC Symbol;Acc:HGNC:18363]
ENSCJAG00000019290	KNOWN	protein_coding	PPP2R5E	chromosome:C_jacchus3.2.1:10:1:132174527:1	88294163	88469798	R	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform {ECO:0000313|EMBL:JAB07931.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035884}  [Source:UniProtKB/TrEMBL;Acc:F7GS26]
ENSCJAG00000018445	KNOWN_BY_PROJECTION	protein_coding	PXMP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	3571872	3600939	D	peroxisomal membrane protein 4, 24kDa [Source:HGNC Symbol;Acc:HGNC:15920]
ENSCJAG00000005952	KNOWN	protein_coding	PEA15	chromosome:C_jacchus3.2.1:18:1:47448759:1	13792987	13803331	D	Astrocytic phosphoprotein PEA-15 {ECO:0000313|EMBL:JAB07107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010971}  [Source:UniProtKB/TrEMBL;Acc:F7ICU5]
ENSCJAG00000018451	KNOWN_BY_PROJECTION	protein_coding	E2F1	chromosome:C_jacchus3.2.1:5:1:159171411:1	3619220	3631044	D	E2F transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3113]
ENSCJAG00000018455	KNOWN_BY_PROJECTION	protein_coding	NECAB3	chromosome:C_jacchus3.2.1:5:1:159171411:1	3633249	3651362	D	N-terminal EF-hand calcium binding protein 3 [Source:HGNC Symbol;Acc:HGNC:15851]
ENSCJAG00000038128	NOVEL	pseudogene	ENSCJAG00000038128	chromosome:C_jacchus3.2.1:18:1:47448759:1	13802052	13803331	D	<no descrition>
ENSCJAG00000005913	KNOWN	protein_coding	DCAF8	chromosome:C_jacchus3.2.1:18:1:47448759:1	13804625	13849529	R	DDB1-and CUL4-associated factor 8 {ECO:0000313|EMBL:JAB11617.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010930}  [Source:UniProtKB/TrEMBL;Acc:F7IHP0]
ENSCJAG00000005604	KNOWN	protein_coding	LUZP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	57086027	57170130	R	Leucine zipper protein 1 {ECO:0000313|EMBL:JAB04255.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010225}  [Source:UniProtKB/TrEMBL;Acc:F6V9N6]
ENSCJAG00000018471	KNOWN_BY_PROJECTION	protein_coding	C20orf144	chromosome:C_jacchus3.2.1:5:1:159171411:1	3644001	3645444	R	chromosome 20 open reading frame 144 [Source:HGNC Symbol;Acc:HGNC:16137]
ENSCJAG00000005598	KNOWN	protein_coding	HTR1D	chromosome:C_jacchus3.2.1:7:1:155834243:1	57193952	57198084	R	5-hydroxytryptamine receptor 1D {ECO:0000313|EMBL:JAB04200.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010216}  [Source:UniProtKB/TrEMBL;Acc:F6V9Y1]
ENSCJAG00000018475	KNOWN_BY_PROJECTION	protein_coding	CBFA2T2	chromosome:C_jacchus3.2.1:5:1:159171411:1	3661699	3830808	R	core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:HGNC Symbol;Acc:HGNC:1536]
ENSCJAG00000004621	KNOWN	protein_coding	ZMYM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	133301564	133422960	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008606}; Zinc finger MYM-type protein 2 {ECO:0000313|EMBL:JAB10913.1}  [Source:UniProtKB/TrEMBL;Acc:F7IHR5]
ENSCJAG00000014075	KNOWN	protein_coding	LRFN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	32594606	32603286	R	Leucine-rich repeat and fibronectin type III domain-containing protein 1 {ECO:0000313|EMBL:JAB32379.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025872}  [Source:UniProtKB/TrEMBL;Acc:F6ZDB3]
ENSCJAG00000014078	KNOWN	protein_coding	SAMD4B	chromosome:C_jacchus3.2.1:22:1:49145316:1	32635810	32681931	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025941}  [Source:UniProtKB/TrEMBL;Acc:F6VWL3]
ENSCJAG00000005512	KNOWN	protein_coding	HNRNPR	chromosome:C_jacchus3.2.1:7:1:155834243:1	57337436	57370934	R	Heterogeneous nuclear ribonucleoprotein R isoform 1 {ECO:0000313|EMBL:JAB05600.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010211}  [Source:UniProtKB/TrEMBL;Acc:F6VA11]
ENSCJAG00000014124	KNOWN_BY_PROJECTION	protein_coding	PAF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	32683003	32690378	R	Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25459]
ENSCJAG00000003010	KNOWN	protein_coding	ENPP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	132145868	132226660	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005499}  [Source:UniProtKB/TrEMBL;Acc:F7HLD6]
ENSCJAG00000018492	NOVEL	protein_coding	ENSCJAG00000018492	chromosome:C_jacchus3.2.1:5:1:159171411:1	3904705	3906866	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034291}  [Source:UniProtKB/TrEMBL;Acc:F7ATA9]
ENSCJAG00000018516	KNOWN_BY_PROJECTION	protein_coding	SNTA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	3920589	3956141	D	syntrophin, alpha 1 [Source:HGNC Symbol;Acc:HGNC:11167]
ENSCJAG00000018500	KNOWN	protein_coding	CDK5RAP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	3961435	3999627	D	CDK5 regulatory subunit-associated protein 1 isoform a {ECO:0000313|EMBL:JAB02150.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034325}  [Source:UniProtKB/TrEMBL;Acc:F6YSY5]
ENSCJAG00000005879	KNOWN	protein_coding	PEX19	chromosome:C_jacchus3.2.1:18:1:47448759:1	13863547	13870392	R	Peroxisomal biogenesis factor 19 isoform a {ECO:0000313|EMBL:JAB17258.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010842}  [Source:UniProtKB/TrEMBL;Acc:F7HWJ8]
ENSCJAG00000014147	KNOWN_BY_PROJECTION	protein_coding	MED29	chromosome:C_jacchus3.2.1:22:1:49145316:1	32690530	32699035	D	mediator complex subunit 29 [Source:HGNC Symbol;Acc:HGNC:23074]
ENSCJAG00000014156	KNOWN_BY_PROJECTION	protein_coding	ZFP36	chromosome:C_jacchus3.2.1:22:1:49145316:1	32707575	32710110	D	ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]
ENSCJAG00000014160	KNOWN_BY_PROJECTION	protein_coding	PLEKHG2	chromosome:C_jacchus3.2.1:22:1:49145316:1	32715705	32729941	D	pleckstrin homology domain containing, family G (with RhoGef domain) member 2 [Source:HGNC Symbol;Acc:HGNC:29515]
ENSCJAG00000014170	KNOWN_BY_PROJECTION	protein_coding	RPS16	chromosome:C_jacchus3.2.1:22:1:49145316:1	32736900	32738744	R	ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
ENSCJAG00000002995	KNOWN_BY_PROJECTION	protein_coding	CTGF	chromosome:C_jacchus3.2.1:4:1:171630274:1	132279382	132282695	R	connective tissue growth factor [Source:HGNC Symbol;Acc:HGNC:2500]
ENSCJAG00000005837	KNOWN_BY_PROJECTION	protein_coding	COPA	chromosome:C_jacchus3.2.1:18:1:47448759:1	13875593	13926328	R	coatomer protein complex, subunit alpha [Source:HGNC Symbol;Acc:HGNC:2230]
ENSCJAG00000005777	KNOWN	protein_coding	NCSTN	chromosome:C_jacchus3.2.1:18:1:47448759:1	13926308	13942732	D	Nicastrin {ECO:0000313|EMBL:JAB03663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043090}  [Source:UniProtKB/TrEMBL;Acc:F7HT10]
ENSCJAG00000005489	KNOWN_BY_PROJECTION	protein_coding	ZNF436	chromosome:C_jacchus3.2.1:7:1:155834243:1	57381917	57390206	R	zinc finger protein 436 [Source:HGNC Symbol;Acc:HGNC:20814]
ENSCJAG00000001850	KNOWN_BY_PROJECTION	protein_coding	TCEA3	chromosome:C_jacchus3.2.1:7:1:155834243:1	57401809	57443752	R	transcription elongation factor A (SII), 3 [Source:HGNC Symbol;Acc:HGNC:11615]
ENSCJAG00000005775	KNOWN_BY_PROJECTION	protein_coding	NHLH1	chromosome:C_jacchus3.2.1:18:1:47448759:1	13950497	13954564	D	nescient helix loop helix 1 [Source:HGNC Symbol;Acc:HGNC:7817]
ENSCJAG00000005758	KNOWN	protein_coding	VANGL2	chromosome:C_jacchus3.2.1:18:1:47448759:1	13979020	14008784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010596}  [Source:UniProtKB/TrEMBL;Acc:F7I8F9]
ENSCJAG00000001861	KNOWN_BY_PROJECTION	protein_coding	ASAP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	57448074	57506464	R	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 [Source:HGNC Symbol;Acc:HGNC:14987]
ENSCJAG00000014182	KNOWN_BY_PROJECTION	protein_coding	SUPT5H	chromosome:C_jacchus3.2.1:22:1:49145316:1	32748527	32781587	D	suppressor of Ty 5 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:11469]
ENSCJAG00000004795	KNOWN_BY_PROJECTION	protein_coding	GJA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	133470844	133494557	R	gap junction protein, alpha 3, 46kDa [Source:HGNC Symbol;Acc:HGNC:4277]
ENSCJAG00000031734	NOVEL	protein_coding	ENSCJAG00000031734	chromosome:C_jacchus3.2.1:5:1:159171411:1	133513269	133513747	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051459}  [Source:UniProtKB/TrEMBL;Acc:F7B195]
ENSCJAG00000022036	KNOWN	protein_coding	GJB2	chromosome:C_jacchus3.2.1:5:1:159171411:1	133523283	133527510	R	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F7HZW5]
ENSCJAG00000022038	NOVEL	protein_coding	ENSCJAG00000022038	chromosome:C_jacchus3.2.1:18:1:47448759:1	14055453	14057357	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040708}  [Source:UniProtKB/TrEMBL;Acc:F7HZW2]
ENSCJAG00000022037	KNOWN	protein_coding	GJB6	chromosome:C_jacchus3.2.1:5:1:159171411:1	133555440	133565478	R	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F7IEX2]
ENSCJAG00000014276	KNOWN_BY_PROJECTION	protein_coding	TIMM50	chromosome:C_jacchus3.2.1:22:1:49145316:1	32784443	32793192	D	translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:23656]
ENSCJAG00000004800	KNOWN	protein_coding	CRYL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	133733826	133859013	R	Lambda-crystallin homolog {ECO:0000313|EMBL:JAB05629.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008772}  [Source:UniProtKB/TrEMBL;Acc:F7HM70]
ENSCJAG00000014280	KNOWN_BY_PROJECTION	protein_coding	DLL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	32799531	32809111	D	delta-like 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:2909]
ENSCJAG00000019333	KNOWN	protein_coding	WDR89	chromosome:C_jacchus3.2.1:10:1:132174527:1	88525198	88568754	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035888}; WD repeat-containing protein 89 {ECO:0000313|EMBL:JAB02979.1}  [Source:UniProtKB/TrEMBL;Acc:F7GS16]
ENSCJAG00000019335	NOVEL	pseudogene	ENSCJAG00000019335	chromosome:C_jacchus3.2.1:10:1:132174527:1	88584306	88585060	D	<no descrition>
ENSCJAG00000019336	KNOWN	protein_coding	SGPP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	88604272	88649901	R	Sphingosine-1-phosphate phosphatase 1 {ECO:0000313|EMBL:JAB04492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035904}  [Source:UniProtKB/TrEMBL;Acc:F7FZG3]
ENSCJAG00000005750	KNOWN_BY_PROJECTION	protein_coding	SLAMF6	chromosome:C_jacchus3.2.1:18:1:47448759:1	14072815	14094418	R	SLAM family member 6 [Source:HGNC Symbol;Acc:HGNC:21392]
ENSCJAG00000005734	KNOWN_BY_PROJECTION	protein_coding	CD84	chromosome:C_jacchus3.2.1:18:1:47448759:1	14111506	14142546	R	CD84 molecule [Source:HGNC Symbol;Acc:HGNC:1704]
ENSCJAG00000014304	KNOWN_BY_PROJECTION	protein_coding	FCGBP	chromosome:C_jacchus3.2.1:22:1:49145316:1	32861712	32914999	D	Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
ENSCJAG00000005699	KNOWN_BY_PROJECTION	protein_coding	SLAMF1	chromosome:C_jacchus3.2.1:18:1:47448759:1	14182428	14225526	R	signaling lymphocytic activation molecule family member 1 [Source:HGNC Symbol;Acc:HGNC:10903]
ENSCJAG00000004815	KNOWN_BY_PROJECTION	protein_coding	IFT88	chromosome:C_jacchus3.2.1:5:1:159171411:1	133892608	133996393	D	intraflagellar transport 88 [Source:HGNC Symbol;Acc:HGNC:20606]
ENSCJAG00000019341	KNOWN_BY_PROJECTION	protein_coding	SYNE2	chromosome:C_jacchus3.2.1:10:1:132174527:1	88749552	89131645	D	spectrin repeat containing, nuclear envelope 2 [Source:HGNC Symbol;Acc:HGNC:17084]
ENSCJAG00000010589	NOVEL	protein_coding	ENSCJAG00000010589	chromosome:C_jacchus3.2.1:5:1:159171411:1	4011556	4029851	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049362}  [Source:UniProtKB/TrEMBL;Acc:F6YG93]
ENSCJAG00000018531	KNOWN_BY_PROJECTION	protein_coding	BPIFB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	4045722	4073116	R	BPI fold containing family B, member 1 [Source:HGNC Symbol;Acc:HGNC:16108]
ENSCJAG00000018547	KNOWN_BY_PROJECTION	protein_coding	BPIFA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	4100455	4107606	R	BPI fold containing family A, member 1 [Source:HGNC Symbol;Acc:HGNC:15749]
ENSCJAG00000005681	KNOWN_BY_PROJECTION	protein_coding	CD48	chromosome:C_jacchus3.2.1:18:1:47448759:1	14260799	14278686	R	CD48 molecule [Source:HGNC Symbol;Acc:HGNC:1683]
ENSCJAG00000005659	KNOWN_BY_PROJECTION	protein_coding	SLAMF7	chromosome:C_jacchus3.2.1:18:1:47448759:1	14300005	14315136	D	SLAM family member 7 [Source:HGNC Symbol;Acc:HGNC:21394]
ENSCJAG00000020962	KNOWN_BY_PROJECTION	protein_coding	E2F2	chromosome:C_jacchus3.2.1:7:1:155834243:1	57539601	57565202	R	E2F transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:3114]
ENSCJAG00000014319	KNOWN_BY_PROJECTION	protein_coding	FBL	chromosome:C_jacchus3.2.1:22:1:49145316:1	32929513	32934062	D	fibrillarin [Source:HGNC Symbol;Acc:HGNC:3599]
ENSCJAG00000014325	KNOWN	protein_coding	DYRK1B	chromosome:C_jacchus3.2.1:22:1:49145316:1	32934323	32943539	D	Dual specificity tyrosine-phosphorylation-regulated kinase 1B isoform a {ECO:0000313|EMBL:JAB09686.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026415}  [Source:UniProtKB/TrEMBL;Acc:F7HZW3]
ENSCJAG00000020959	KNOWN	protein_coding	ID3	chromosome:C_jacchus3.2.1:7:1:155834243:1	57592076	57593987	R	DNA-binding protein inhibitor ID-3 {ECO:0000313|EMBL:JAB06940.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038987}  [Source:UniProtKB/TrEMBL;Acc:F7IIH1]
ENSCJAG00000020956	NOVEL	protein_coding	ENSCJAG00000020956	chromosome:C_jacchus3.2.1:7:1:155834243:1	57699995	57701412	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038981}  [Source:UniProtKB/TrEMBL;Acc:F7IIH5]
ENSCJAG00000020953	KNOWN_BY_PROJECTION	protein_coding	RPL11	chromosome:C_jacchus3.2.1:7:1:155834243:1	57716384	57721749	D	ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
ENSCJAG00000020934	KNOWN_BY_PROJECTION	protein_coding	TCEB3	chromosome:C_jacchus3.2.1:7:1:155834243:1	57771646	57791330	D	transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) [Source:HGNC Symbol;Acc:HGNC:11620]
ENSCJAG00000007650	KNOWN_BY_PROJECTION	protein_coding	LEUTX	chromosome:C_jacchus3.2.1:22:1:49145316:1	32991354	32993233	R	leucine twenty homeobox [Source:HGNC Symbol;Acc:HGNC:31953]
ENSCJAG00000031554	NOVEL	protein_coding	ENSCJAG00000031554	chromosome:C_jacchus3.2.1:22:1:49145316:1	33012538	33015910	D	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F7CRD6]
ENSCJAG00000004884	KNOWN_BY_PROJECTION	protein_coding	IL17D	chromosome:C_jacchus3.2.1:5:1:159171411:1	134017457	134041842	D	interleukin 17D [Source:HGNC Symbol;Acc:HGNC:5984]
ENSCJAG00000032894	NOVEL	protein_coding	ENSCJAG00000032894	chromosome:C_jacchus3.2.1:22:1:49145316:1	33030209	33033074	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F6Q8I8]
ENSCJAG00000014370	NOVEL	protein_coding	LGALS10B	chromosome:C_jacchus3.2.1:22:1:49145316:1	33068073	33358580	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:C4XVA8]
ENSCJAG00000005606	KNOWN_BY_PROJECTION	protein_coding	LY9	chromosome:C_jacchus3.2.1:18:1:47448759:1	14349533	14384033	D	lymphocyte antigen 9 [Source:HGNC Symbol;Acc:HGNC:6730]
ENSCJAG00000020925	KNOWN	protein_coding	PITHD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	57808084	57817258	D	PITH domain-containing protein 1 {ECO:0000313|EMBL:JAB03619.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038940}  [Source:UniProtKB/TrEMBL;Acc:F7IQG0]
ENSCJAG00000014382	NOVEL	protein_coding	ENSCJAG00000014382	chromosome:C_jacchus3.2.1:22:1:49145316:1	33095664	33098288	D	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F7HQ58]
ENSCJAG00000014380	NOVEL	protein_coding	ENSCJAG00000014380	chromosome:C_jacchus3.2.1:22:1:49145316:1	33170779	33179008	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F7G0W7]
ENSCJAG00000020914	KNOWN_BY_PROJECTION	protein_coding	LYPLA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	57819535	57824823	D	lysophospholipase II [Source:HGNC Symbol;Acc:HGNC:6738]
ENSCJAG00000002971	KNOWN	protein_coding	MOXD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	132637336	132760415	R	DBH-like monooxygenase protein 1 {ECO:0000313|EMBL:JAB09426.1}; Monooxygenase, DBH-like 1 isoform 2 (Predicted) {ECO:0000313|EMBL:ABY79125.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005407}  [Source:UniProtKB/TrEMBL;Acc:B0KWA2]
ENSCJAG00000036578	NOVEL	protein_coding	ENSCJAG00000036578	chromosome:C_jacchus3.2.1:22:1:49145316:1	33243829	33252069	R	Galectin {ECO:0000256|RuleBase:RU102079}  [Source:UniProtKB/TrEMBL;Acc:F7H2F3]
ENSCJAG00000034309	NOVEL	pseudogene	ENSCJAG00000034309	chromosome:C_jacchus3.2.1:22:1:49145316:1	33353210	33354123	D	<no descrition>
ENSCJAG00000014401	NOVEL	pseudogene	ENSCJAG00000014401	chromosome:C_jacchus3.2.1:22:1:49145316:1	33370388	33371785	D	<no descrition>
ENSCJAG00000014402	KNOWN	protein_coding	EID2B	chromosome:C_jacchus3.2.1:22:1:49145316:1	33382397	33383747	D	EP300-interacting inhibitor of differentiation 2B {ECO:0000313|EMBL:JAB03407.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026475}  [Source:UniProtKB/TrEMBL;Acc:F7IT55]
ENSCJAG00000032436	NOVEL	protein_coding	ENSCJAG00000032436	chromosome:C_jacchus3.2.1:22:1:49145316:1	33392048	33394693	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026502}  [Source:UniProtKB/TrEMBL;Acc:F7IL24]
ENSCJAG00000014417	KNOWN	protein_coding	PSMC4	chromosome:C_jacchus3.2.1:22:1:49145316:1	33408654	33419553	D	26S protease regulatory subunit 6B isoform 1 {ECO:0000313|EMBL:JAB05649.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026635}  [Source:UniProtKB/TrEMBL;Acc:F7HZR5]
ENSCJAG00000004891	KNOWN_BY_PROJECTION	protein_coding	N6AMT2	chromosome:C_jacchus3.2.1:5:1:159171411:1	134047476	134099233	R	N-6 adenine-specific DNA methyltransferase 2 (putative) [Source:HGNC Symbol;Acc:HGNC:27351]
ENSCJAG00000020906	KNOWN_BY_PROJECTION	protein_coding	GALE	chromosome:C_jacchus3.2.1:7:1:155834243:1	57824885	57829967	R	UDP-galactose-4-epimerase [Source:HGNC Symbol;Acc:HGNC:4116]
ENSCJAG00000004899	KNOWN_BY_PROJECTION	protein_coding	XPO4	chromosome:C_jacchus3.2.1:5:1:159171411:1	134103087	134227047	R	exportin 4 [Source:HGNC Symbol;Acc:HGNC:17796]
ENSCJAG00000020903	KNOWN_BY_PROJECTION	protein_coding	HMGCL	chromosome:C_jacchus3.2.1:7:1:155834243:1	57831849	57856159	R	3-hydroxymethyl-3-methylglutaryl-CoA lyase [Source:HGNC Symbol;Acc:HGNC:5005]
ENSCJAG00000020898	KNOWN	protein_coding	FUCA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	57862253	57882597	R	Tissue alpha-L-fucosidase {ECO:0000313|EMBL:JAB02907.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038881}  [Source:UniProtKB/TrEMBL;Acc:F7HZM3]
ENSCJAG00000005583	KNOWN	protein_coding	CD244	chromosome:C_jacchus3.2.1:18:1:47448759:1	14385789	14422770	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010222}  [Source:UniProtKB/TrEMBL;Acc:F6V9S0]
ENSCJAG00000002932	KNOWN	protein_coding	STX7	chromosome:C_jacchus3.2.1:4:1:171630274:1	132812464	132874866	R	Syntaxin 7 (Predicted) {ECO:0000313|EMBL:ABY79126.1}; Syntaxin-7 {ECO:0000313|EMBL:JAB04310.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005369}  [Source:UniProtKB/TrEMBL;Acc:B0KWA3]
ENSCJAG00000032344	NOVEL	pseudogene	ENSCJAG00000032344	chromosome:C_jacchus3.2.1:5:1:159171411:1	134271781	134272021	D	<no descrition>
ENSCJAG00000005013	KNOWN_BY_PROJECTION	protein_coding	LATS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	134300199	134394041	R	large tumor suppressor kinase 2 [Source:HGNC Symbol;Acc:HGNC:6515]
ENSCJAG00000033442	KNOWN_BY_PROJECTION	protein_coding	CNR2	chromosome:C_jacchus3.2.1:7:1:155834243:1	57888903	57925608	R	cannabinoid receptor 2 (macrophage) [Source:HGNC Symbol;Acc:HGNC:2160]
ENSCJAG00000002925	KNOWN_BY_PROJECTION	protein_coding	TAAR8	chromosome:C_jacchus3.2.1:4:1:171630274:1	132904249	132938394	D	trace amine associated receptor 8 [Source:HGNC Symbol;Acc:HGNC:14964]
ENSCJAG00000020896	KNOWN	protein_coding	ENSCJAG00000020896	chromosome:C_jacchus3.2.1:7:1:155834243:1	57954323	57957942	D	Proline-rich nuclear receptor coactivator 2 {ECO:0000313|EMBL:JAB03410.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038870}  [Source:UniProtKB/TrEMBL;Acc:F7HZN3]
ENSCJAG00000020883	KNOWN_BY_PROJECTION	protein_coding	SRSF10	chromosome:C_jacchus3.2.1:7:1:155834243:1	57959596	57975882	R	serine/arginine-rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713]
ENSCJAG00000019502	KNOWN_BY_PROJECTION	protein_coding	ESR2	chromosome:C_jacchus3.2.1:10:1:132174527:1	89133494	89294086	R	estrogen receptor 2 (ER beta) [Source:HGNC Symbol;Acc:HGNC:3468]
ENSCJAG00000005561	KNOWN_BY_PROJECTION	protein_coding	ITLN1	chromosome:C_jacchus3.2.1:18:1:47448759:1	14446570	14485146	R	intelectin 1 (galactofuranose binding) [Source:HGNC Symbol;Acc:HGNC:18259]
ENSCJAG00000020880	KNOWN_BY_PROJECTION	protein_coding	MYOM3	chromosome:C_jacchus3.2.1:7:1:155834243:1	58046474	58105771	R	myomesin 3 [Source:HGNC Symbol;Acc:HGNC:26679]
ENSCJAG00000020877	KNOWN_BY_PROJECTION	protein_coding	IL22RA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	58115310	58142703	R	interleukin 22 receptor, alpha 1 [Source:HGNC Symbol;Acc:HGNC:13700]
ENSCJAG00000005027	NOVEL	pseudogene	ENSCJAG00000005027	chromosome:C_jacchus3.2.1:5:1:159171411:1	134370647	134371095	D	<no descrition>
ENSCJAG00000034004	NOVEL	pseudogene	ENSCJAG00000034004	chromosome:C_jacchus3.2.1:5:1:159171411:1	134378423	134379015	D	<no descrition>
ENSCJAG00000018645	KNOWN	protein_coding	SAP18	chromosome:C_jacchus3.2.1:5:1:159171411:1	134481955	134492799	D	Histone deacetylase complex subunit SAP18 {ECO:0000313|EMBL:JAB01872.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034642}  [Source:UniProtKB/TrEMBL;Acc:F7IS86]
ENSCJAG00000018656	NOVEL	protein_coding	ENSCJAG00000018656	chromosome:C_jacchus3.2.1:5:1:159171411:1	134499358	134499810	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034658}  [Source:UniProtKB/TrEMBL;Acc:F7IPW7]
ENSCJAG00000020867	KNOWN_BY_PROJECTION	protein_coding	IFNLR1	chromosome:C_jacchus3.2.1:7:1:155834243:1	58155886	58184233	R	interferon, lambda receptor 1 [Source:HGNC Symbol;Acc:HGNC:18584]
ENSCJAG00000018664	KNOWN_BY_PROJECTION	protein_coding	SKA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	134502754	134529434	R	spindle and kinetochore associated complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:20262]
ENSCJAG00000014496	KNOWN_BY_PROJECTION	protein_coding	ZNF546	chromosome:C_jacchus3.2.1:22:1:49145316:1	33435120	33476139	D	zinc finger protein 546 [Source:HGNC Symbol;Acc:HGNC:28671]
ENSCJAG00000014507	NOVEL	protein_coding	ENSCJAG00000014507	chromosome:C_jacchus3.2.1:22:1:49145316:1	33462622	33510725	R	<no descrition>
ENSCJAG00000018677	KNOWN	protein_coding	ZDHHC20	chromosome:C_jacchus3.2.1:5:1:159171411:1	134555936	134646632	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F7IAP1]
ENSCJAG00000020858	KNOWN_BY_PROJECTION	protein_coding	GRHL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	58334015	58378439	D	grainyhead-like 3 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:25839]
ENSCJAG00000014541	KNOWN_BY_PROJECTION	protein_coding	MAP3K10	chromosome:C_jacchus3.2.1:22:1:49145316:1	33588162	33610571	D	mitogen-activated protein kinase kinase kinase 10 [Source:HGNC Symbol;Acc:HGNC:6849]
ENSCJAG00000002916	NOVEL	pseudogene	ENSCJAG00000002916	chromosome:C_jacchus3.2.1:4:1:171630274:1	132966890	132967933	R	<no descrition>
ENSCJAG00000002912	KNOWN_BY_PROJECTION	protein_coding	TAAR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	132994259	133002346	R	trace amine associated receptor 2 [Source:HGNC Symbol;Acc:HGNC:4514]
ENSCJAG00000036205	KNOWN_BY_PROJECTION	protein_coding	VNN1	chromosome:C_jacchus3.2.1:4:1:171630274:1	133072002	133105681	R	vanin 1 [Source:HGNC Symbol;Acc:HGNC:12705]
ENSCJAG00000020857	KNOWN_BY_PROJECTION	protein_coding	STPG1	chromosome:C_jacchus3.2.1:7:1:155834243:1	58371185	58416510	R	sperm-tail PG-rich repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:28070]
ENSCJAG00000005558	NOVEL	pseudogene	ENSCJAG00000005558	chromosome:C_jacchus3.2.1:18:1:47448759:1	14467433	14467968	R	<no descrition>
ENSCJAG00000005522	KNOWN	protein_coding	F11R	chromosome:C_jacchus3.2.1:18:1:47448759:1	14505730	14533515	R	Junctional adhesion molecule A {ECO:0000313|EMBL:JAB05093.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010129}  [Source:UniProtKB/TrEMBL;Acc:F6YTL1]
ENSCJAG00000020848	KNOWN	protein_coding	NIPAL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	58430742	58483842	D	NIPA-like protein 3 {ECO:0000313|EMBL:JAB10854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038793}  [Source:UniProtKB/TrEMBL;Acc:F7IDR0]
ENSCJAG00000014563	KNOWN_BY_PROJECTION	protein_coding	TTC9B	chromosome:C_jacchus3.2.1:22:1:49145316:1	33611339	33613707	R	tetratricopeptide repeat domain 9B [Source:HGNC Symbol;Acc:HGNC:26395]
ENSCJAG00000018708	NOVEL	protein_coding	ENSCJAG00000018708	chromosome:C_jacchus3.2.1:5:1:159171411:1	134650906	134651520	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034752}  [Source:UniProtKB/TrEMBL;Acc:F7I604]
ENSCJAG00000018710	KNOWN	protein_coding	MICU2	chromosome:C_jacchus3.2.1:5:1:159171411:1	134690488	134796925	R	EF-hand domain-containing family member A1 {ECO:0000313|EMBL:JAB04719.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034762}  [Source:UniProtKB/TrEMBL;Acc:F7I3P5]
ENSCJAG00000020838	KNOWN_BY_PROJECTION	protein_coding	RCAN3	chromosome:C_jacchus3.2.1:7:1:155834243:1	58517325	58559734	D	RCAN family member 3 [Source:HGNC Symbol;Acc:HGNC:3042]
ENSCJAG00000014570	KNOWN_BY_PROJECTION	protein_coding	CNTD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	33617716	33621703	R	cyclin N-terminal domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25805]
ENSCJAG00000014574	KNOWN_BY_PROJECTION	protein_coding	AKT2	chromosome:C_jacchus3.2.1:22:1:49145316:1	33633708	33695926	R	v-akt murine thymoma viral oncogene homolog 2 [Source:HGNC Symbol;Acc:HGNC:392]
ENSCJAG00000005517	NOVEL	protein_coding	ENSCJAG00000005517	chromosome:C_jacchus3.2.1:18:1:47448759:1	14546219	14547143	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052464}  [Source:UniProtKB/TrEMBL;Acc:F7I2D9]
ENSCJAG00000005513	KNOWN	protein_coding	TSTD1	chromosome:C_jacchus3.2.1:18:1:47448759:1	14551335	14552495	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010063}  [Source:UniProtKB/TrEMBL;Acc:F7BCX2]
ENSCJAG00000020836	KNOWN_BY_PROJECTION	protein_coding	NCMAP	chromosome:C_jacchus3.2.1:7:1:155834243:1	58596319	58651913	D	noncompact myelin associated protein [Source:HGNC Symbol;Acc:HGNC:29332]
ENSCJAG00000005396	KNOWN_BY_PROJECTION	protein_coding	USF1	chromosome:C_jacchus3.2.1:18:1:47448759:1	14553346	14559753	R	upstream transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12593]
ENSCJAG00000020822	KNOWN	protein_coding	SRRM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	58688596	58717945	D	Serine/arginine repetitive matrix protein 1 {ECO:0000313|EMBL:JAB06261.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038750}  [Source:UniProtKB/TrEMBL;Acc:F7IG54]
ENSCJAG00000018716	KNOWN	protein_coding	FGF9	chromosome:C_jacchus3.2.1:5:1:159171411:1	134859627	134895366	D	Fibroblast growth factor {ECO:0000256|RuleBase:RU049442}  [Source:UniProtKB/TrEMBL;Acc:F7I3P1]
ENSCJAG00000018729	KNOWN	protein_coding	SGCG	chromosome:C_jacchus3.2.1:5:1:159171411:1	136440033	136561270	D	Gamma-sarcoglycan {ECO:0000313|EMBL:JAB23353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034805}  [Source:UniProtKB/TrEMBL;Acc:F7HWH1]
ENSCJAG00000002893	KNOWN_BY_PROJECTION	protein_coding	VNN3	chromosome:C_jacchus3.2.1:4:1:171630274:1	133115413	133128580	R	vanin 3 [Source:HGNC Symbol;Acc:HGNC:16431]
ENSCJAG00000005467	KNOWN_BY_PROJECTION	protein_coding	ARHGAP30	chromosome:C_jacchus3.2.1:18:1:47448759:1	14560753	14586928	R	Rho GTPase activating protein 30 [Source:HGNC Symbol;Acc:HGNC:27414]
ENSCJAG00000020833	KNOWN	protein_coding	CLIC4	chromosome:C_jacchus3.2.1:7:1:155834243:1	58788482	58884467	D	Chloride intracellular channel protein 4 {ECO:0000313|EMBL:JAB04009.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050546}  [Source:UniProtKB/TrEMBL;Acc:F7EXF2]
ENSCJAG00000002872	KNOWN_BY_PROJECTION	protein_coding	SLC18B1	chromosome:C_jacchus3.2.1:4:1:171630274:1	133162444	133188752	R	solute carrier family 18, subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:21573]
ENSCJAG00000020815	KNOWN_BY_PROJECTION	protein_coding	RUNX3	chromosome:C_jacchus3.2.1:7:1:155834243:1	58944667	58974794	R	runt-related transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:10473]
ENSCJAG00000014611	NOVEL	pseudogene	ENSCJAG00000014611	chromosome:C_jacchus3.2.1:22:1:49145316:1	33702813	33703628	D	<no descrition>
ENSCJAG00000018745	KNOWN_BY_PROJECTION	protein_coding	SACS	chromosome:C_jacchus3.2.1:5:1:159171411:1	136564916	136611849	R	sacsin molecular chaperone [Source:HGNC Symbol;Acc:HGNC:10519]
ENSCJAG00000014624	KNOWN_BY_PROJECTION	protein_coding	C19orf47	chromosome:C_jacchus3.2.1:22:1:49145316:1	33714427	33738158	R	chromosome 19 open reading frame 47 [Source:HGNC Symbol;Acc:HGNC:26723]
ENSCJAG00000018559	KNOWN_BY_PROJECTION	protein_coding	SYF2	chromosome:C_jacchus3.2.1:7:1:155834243:1	59296421	59300793	R	SYF2 pre-mRNA-splicing factor [Source:HGNC Symbol;Acc:HGNC:19824]
ENSCJAG00000018568	KNOWN	protein_coding	RSRP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	59314480	59341916	R	UPF0471 protein C1orf63 {ECO:0000313|EMBL:JAB04867.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034463}  [Source:UniProtKB/TrEMBL;Acc:F7IMN5]
ENSCJAG00000018750	KNOWN	protein_coding	TNFRSF19	chromosome:C_jacchus3.2.1:5:1:159171411:1	136834029	136943286	D	Tumor necrosis factor receptor superfamily member 19 isoform 2 {ECO:0000313|EMBL:JAB07580.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046794}  [Source:UniProtKB/TrEMBL;Acc:F7I198]
ENSCJAG00000018575	KNOWN	protein_coding	TMEM50A	chromosome:C_jacchus3.2.1:7:1:155834243:1	59342082	59362989	D	Transmembrane protein 50A {ECO:0000313|EMBL:JAB06718.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034480}  [Source:UniProtKB/TrEMBL;Acc:F7IKB5]
ENSCJAG00000019526	KNOWN	protein_coding	MTHFD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	89294293	89368423	D	C-1-tetrahydrofolate synthase, cytoplasmic {ECO:0000313|EMBL:JAB02474.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036337}  [Source:UniProtKB/TrEMBL;Acc:F7GY81]
ENSCJAG00000018582	NOVEL	protein_coding	ENSCJAG00000018582	chromosome:C_jacchus3.2.1:7:1:155834243:1	59364231	59428546	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034564}  [Source:UniProtKB/TrEMBL;Acc:F7I3U5]
ENSCJAG00000005452	KNOWN	protein_coding	PVRL4	chromosome:C_jacchus3.2.1:18:1:47448759:1	14589500	14606678	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009973}  [Source:UniProtKB/TrEMBL;Acc:F7HC72]
ENSCJAG00000005389	KNOWN_BY_PROJECTION	protein_coding	KLHDC9	chromosome:C_jacchus3.2.1:18:1:47448759:1	14618614	14620583	D	kelch domain containing 9 [Source:HGNC Symbol;Acc:HGNC:28489]
ENSCJAG00000018775	KNOWN	protein_coding	MIPEP	chromosome:C_jacchus3.2.1:5:1:159171411:1	137000040	137166680	R	Mitochondrial intermediate peptidase {ECO:0000313|EMBL:JAB35534.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035013}  [Source:UniProtKB/TrEMBL;Acc:F7IG38]
ENSCJAG00000014633	KNOWN_BY_PROJECTION	protein_coding	PLD3	chromosome:C_jacchus3.2.1:22:1:49145316:1	33745939	33870569	D	phospholipase D family, member 3 [Source:HGNC Symbol;Acc:HGNC:17158]
ENSCJAG00000018625	KNOWN_BY_PROJECTION	protein_coding	TMEM57	chromosome:C_jacchus3.2.1:7:1:155834243:1	59457221	59507383	D	transmembrane protein 57 [Source:HGNC Symbol;Acc:HGNC:25572]
ENSCJAG00000005376	KNOWN	protein_coding	PFDN2	chromosome:C_jacchus3.2.1:18:1:47448759:1	14620794	14640354	R	Prefoldin subunit 2 {ECO:0000313|EMBL:JAB11791.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009840}  [Source:UniProtKB/TrEMBL;Acc:F7F6X9]
ENSCJAG00000005352	KNOWN_BY_PROJECTION	protein_coding	NIT1	chromosome:C_jacchus3.2.1:18:1:47448759:1	14640360	14647809	D	nitrilase 1 [Source:HGNC Symbol;Acc:HGNC:7828]
ENSCJAG00000009366	KNOWN_BY_PROJECTION	protein_coding	LDLRAP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	59540658	59569409	D	low density lipoprotein receptor adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:18640]
ENSCJAG00000009386	KNOWN_BY_PROJECTION	protein_coding	MAN1C1	chromosome:C_jacchus3.2.1:7:1:155834243:1	59607539	59789421	D	mannosidase, alpha, class 1C, member 1 [Source:HGNC Symbol;Acc:HGNC:19080]
ENSCJAG00000005311	KNOWN	protein_coding	DEDD	chromosome:C_jacchus3.2.1:18:1:47448759:1	14643163	14655477	R	Death effector domain-containing protein {ECO:0000313|EMBL:JAB09486.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009775}  [Source:UniProtKB/TrEMBL;Acc:F7GWR4]
ENSCJAG00000009426	KNOWN	protein_coding	MTFR1L	chromosome:C_jacchus3.2.1:7:1:155834243:1	59830892	59844430	D	Protein FAM54B isoform a {ECO:0000313|EMBL:JAB10765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017278}  [Source:UniProtKB/TrEMBL;Acc:F7HLK2]
ENSCJAG00000014644	KNOWN_BY_PROJECTION	protein_coding	HIPK4	chromosome:C_jacchus3.2.1:22:1:49145316:1	33781645	33793886	R	homeodomain interacting protein kinase 4 [Source:HGNC Symbol;Acc:HGNC:19007]
ENSCJAG00000002865	KNOWN_BY_PROJECTION	protein_coding	RPS12	chromosome:C_jacchus3.2.1:4:1:171630274:1	133197857	133201084	D	ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
ENSCJAG00000034505	NOVEL	pseudogene	ENSCJAG00000034505	chromosome:C_jacchus3.2.1:4:1:171630274:1	133471707	133472450	R	<no descrition>
ENSCJAG00000009447	KNOWN_BY_PROJECTION	protein_coding	AUNIP	chromosome:C_jacchus3.2.1:7:1:155834243:1	59846743	59886486	R	aurora kinase A and ninein interacting protein [Source:HGNC Symbol;Acc:HGNC:28363]
ENSCJAG00000002817	KNOWN_BY_PROJECTION	protein_coding	EYA4	chromosome:C_jacchus3.2.1:4:1:171630274:1	133633192	133919025	D	EYA transcriptional coactivator and phosphatase 4 [Source:HGNC Symbol;Acc:HGNC:3522]
ENSCJAG00000009462	KNOWN	protein_coding	STMN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	59914941	59936894	R	Stathmin {ECO:0000256|RuleBase:RU004388}  [Source:UniProtKB/TrEMBL;Acc:F7IA67]
ENSCJAG00000018870	NOVEL	protein_coding	ENSCJAG00000018870	chromosome:C_jacchus3.2.1:5:1:159171411:1	137001825	137272567	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046917}  [Source:UniProtKB/TrEMBL;Acc:F7IAI9]
ENSCJAG00000009522	KNOWN_BY_PROJECTION	protein_coding	SLC30A2	chromosome:C_jacchus3.2.1:7:1:155834243:1	59920157	60076641	R	solute carrier family 30 (zinc transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11013]
ENSCJAG00000005115	KNOWN_BY_PROJECTION	protein_coding	ADAMTS4	chromosome:C_jacchus3.2.1:18:1:47448759:1	14657616	14729141	R	ADAM metallopeptidase with thrombospondin type 1 motif, 4 [Source:HGNC Symbol;Acc:HGNC:220]
ENSCJAG00000014649	KNOWN_BY_PROJECTION	protein_coding	PRX	chromosome:C_jacchus3.2.1:22:1:49145316:1	33798309	33821200	R	periaxin [Source:HGNC Symbol;Acc:HGNC:13797]
ENSCJAG00000009489	KNOWN	protein_coding	PAFAH2	chromosome:C_jacchus3.2.1:7:1:155834243:1	59988110	60027974	R	Platelet-activating factor acetylhydrolase 2, cytoplasmic {ECO:0000313|EMBL:JAB05077.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017397}  [Source:UniProtKB/TrEMBL;Acc:F7I5G8]
ENSCJAG00000014659	KNOWN	protein_coding	SERTAD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	33828616	33833453	R	SERTA domain-containing protein 1 {ECO:0000313|EMBL:JAB02612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026982}  [Source:UniProtKB/TrEMBL;Acc:F7IN23]
ENSCJAG00000014665	KNOWN	protein_coding	BLVRB	chromosome:C_jacchus3.2.1:22:1:49145316:1	33853809	33871543	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026991}  [Source:UniProtKB/TrEMBL;Acc:F7IKS8]
ENSCJAG00000018861	NOVEL	protein_coding	ENSCJAG00000018861	chromosome:C_jacchus3.2.1:5:1:159171411:1	137084823	137181727	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035030}  [Source:UniProtKB/TrEMBL;Acc:F7IDN9]
ENSCJAG00000014669	KNOWN_BY_PROJECTION	protein_coding	SPTBN4	chromosome:C_jacchus3.2.1:22:1:49145316:1	33879885	33989605	D	spectrin, beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
ENSCJAG00000009501	KNOWN_BY_PROJECTION	protein_coding	EXTL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	60050271	60065246	D	exostosin-like glycosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:3515]
ENSCJAG00000005303	KNOWN	protein_coding	UFC1	chromosome:C_jacchus3.2.1:18:1:47448759:1	14682121	14687040	D	Ubiquitin-fold modifier-conjugating enzyme 1 {ECO:0000256|PIRNR:PIRNR008716}  [Source:UniProtKB/TrEMBL;Acc:F7H207]
ENSCJAG00000009571	KNOWN	protein_coding	TRIM63	chromosome:C_jacchus3.2.1:7:1:155834243:1	60090743	60106553	R	E3 ubiquitin-protein ligase TRIM63 {ECO:0000313|EMBL:JAB03484.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017578}  [Source:UniProtKB/TrEMBL;Acc:F7IA12]
ENSCJAG00000018869	NOVEL	protein_coding	ENSCJAG00000018869	chromosome:C_jacchus3.2.1:5:1:159171411:1	137169076	137169664	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035042}  [Source:UniProtKB/TrEMBL;Acc:F7IDK5]
ENSCJAG00000018908	NOVEL	protein_coding	ENSCJAG00000018908	chromosome:C_jacchus3.2.1:5:1:159171411:1	137541843	137547027	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035120}  [Source:UniProtKB/TrEMBL;Acc:F7HZI9]
ENSCJAG00000005255	KNOWN	protein_coding	USP21	chromosome:C_jacchus3.2.1:18:1:47448759:1	14687640	14693798	D	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7EUN1]
ENSCJAG00000009603	KNOWN	protein_coding	PDIK1L	chromosome:C_jacchus3.2.1:7:1:155834243:1	60149759	60164293	D	Serine/threonine-protein kinase PDIK1L {ECO:0000313|EMBL:JAB07996.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017607}  [Source:UniProtKB/TrEMBL;Acc:F7I2V6]
ENSCJAG00000009620	NOVEL	protein_coding	ENSCJAG00000009620	chromosome:C_jacchus3.2.1:7:1:155834243:1	60180260	60180894	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017616}  [Source:UniProtKB/TrEMBL;Acc:F7I0L1]
ENSCJAG00000002811	KNOWN	protein_coding	TCF21	chromosome:C_jacchus3.2.1:4:1:171630274:1	134324227	134327306	D	Transcription factor 21 {ECO:0000313|EMBL:JAB03676.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005103}  [Source:UniProtKB/TrEMBL;Acc:F7IM24]
ENSCJAG00000009624	KNOWN_BY_PROJECTION	protein_coding	ZNF593	chromosome:C_jacchus3.2.1:7:1:155834243:1	60218982	60220253	D	zinc finger protein 593 [Source:HGNC Symbol;Acc:HGNC:30943]
ENSCJAG00000019569	KNOWN	protein_coding	AKAP5	chromosome:C_jacchus3.2.1:10:1:132174527:1	89372767	89376942	D	A-kinase anchor protein 5 {ECO:0000313|EMBL:JAB19231.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036349}  [Source:UniProtKB/TrEMBL;Acc:F7GXY9]
ENSCJAG00000002794	KNOWN	protein_coding	TBPL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	134384295	134416886	D	TATA box-binding protein-like protein 1 {ECO:0000313|EMBL:JAB09295.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046860}  [Source:UniProtKB/TrEMBL;Acc:F7IMB8]
ENSCJAG00000009629	KNOWN_BY_PROJECTION	protein_coding	CNKSR1	chromosome:C_jacchus3.2.1:7:1:155834243:1	60225696	60240686	D	connector enhancer of kinase suppressor of Ras 1 [Source:HGNC Symbol;Acc:HGNC:19700]
ENSCJAG00000009681	KNOWN_BY_PROJECTION	protein_coding	CATSPER4	chromosome:C_jacchus3.2.1:7:1:155834243:1	60243344	60255294	D	cation channel, sperm associated 4 [Source:HGNC Symbol;Acc:HGNC:23220]
ENSCJAG00000018922	NOVEL	protein_coding	ENSCJAG00000018922	chromosome:C_jacchus3.2.1:5:1:159171411:1	137566486	137567396	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047872}  [Source:UniProtKB/TrEMBL;Acc:F7GRX4]
ENSCJAG00000018931	KNOWN_BY_PROJECTION	protein_coding	ATP12A	chromosome:C_jacchus3.2.1:5:1:159171411:1	137673994	137707142	D	ATPase, H+/K+ transporting, nongastric, alpha polypeptide [Source:HGNC Symbol;Acc:HGNC:13816]
ENSCJAG00000019576	KNOWN	protein_coding	ZBTB25	chromosome:C_jacchus3.2.1:10:1:132174527:1	89393983	89415940	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036361}; Zinc finger and BTB domain-containing protein 25 {ECO:0000313|EMBL:JAB15003.1}  [Source:UniProtKB/TrEMBL;Acc:F7GMW8]
ENSCJAG00000032537	NOVEL	pseudogene	ENSCJAG00000032537	chromosome:C_jacchus3.2.1:22:1:49145316:1	33921649	33921889	R	<no descrition>
ENSCJAG00000035970	NOVEL	protein_coding	ENSCJAG00000035970	chromosome:C_jacchus3.2.1:22:1:49145316:1	33931081	33941745	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052364}  [Source:UniProtKB/TrEMBL;Acc:F7INR2]
ENSCJAG00000019591	KNOWN	protein_coding	ZBTB1	chromosome:C_jacchus3.2.1:10:1:132174527:1	89416075	89446526	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050458}; Zinc finger and BTB domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB08874.1}  [Source:UniProtKB/TrEMBL;Acc:F7H8Z5]
ENSCJAG00000009698	KNOWN_BY_PROJECTION	protein_coding	CEP85	chromosome:C_jacchus3.2.1:7:1:155834243:1	60276791	60319083	D	centrosomal protein 85kDa [Source:HGNC Symbol;Acc:HGNC:25309]
ENSCJAG00000036235	NOVEL	protein_coding	ENSCJAG00000036235	chromosome:C_jacchus3.2.1:22:1:49145316:1	33935190	33940383	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052393}  [Source:UniProtKB/TrEMBL;Acc:F7ILB5]
ENSCJAG00000010644	NOVEL	pseudogene	ENSCJAG00000010644	chromosome:C_jacchus3.2.1:22:1:49145316:1	33950581	33950812	D	<no descrition>
ENSCJAG00000019600	KNOWN_BY_PROJECTION	protein_coding	HSPA2	chromosome:C_jacchus3.2.1:10:1:132174527:1	89454244	89456169	D	heat shock 70kDa protein 2 [Source:HGNC Symbol;Acc:HGNC:5235]
ENSCJAG00000014763	KNOWN	protein_coding	SHKBP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	33991588	34005897	D	SH3KBP1-binding protein 1 {ECO:0000313|EMBL:JAB19311.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027230}  [Source:UniProtKB/TrEMBL;Acc:F7G6M1]
ENSCJAG00000005201	KNOWN	protein_coding	PPOX	chromosome:C_jacchus3.2.1:18:1:47448759:1	14694483	14699582	D	Protoporphyrinogen oxidase {ECO:0000313|EMBL:JAB08697.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009592}  [Source:UniProtKB/TrEMBL;Acc:F7GX92]
ENSCJAG00000009734	NOVEL	protein_coding	ENSCJAG00000009734	chromosome:C_jacchus3.2.1:7:1:155834243:1	60304412	60305832	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052326}  [Source:UniProtKB/TrEMBL;Acc:F7HQW7]
ENSCJAG00000009735	KNOWN	protein_coding	SH3BGRL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	60319964	60321775	D	SH3 domain-binding glutamic acid-rich-like protein {ECO:0000256|PIRNR:PIRNR008142}  [Source:UniProtKB/TrEMBL;Acc:F7HKN5]
ENSCJAG00000009748	KNOWN_BY_PROJECTION	protein_coding	UBXN11	chromosome:C_jacchus3.2.1:7:1:155834243:1	60321202	60348288	R	UBX domain protein 11 [Source:HGNC Symbol;Acc:HGNC:30600]
ENSCJAG00000032950	NOVEL	protein_coding	ENSCJAG00000032950	chromosome:C_jacchus3.2.1:10:1:132174527:1	89467526	89482720	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044416}  [Source:UniProtKB/TrEMBL;Acc:F7DJZ6]
ENSCJAG00000019603	NOVEL	protein_coding	ENSCJAG00000019603	chromosome:C_jacchus3.2.1:10:1:132174527:1	89488388	89507682	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036398}  [Source:UniProtKB/TrEMBL;Acc:F7GDU4]
ENSCJAG00000019611	KNOWN_BY_PROJECTION	protein_coding	PLEKHG3	chromosome:C_jacchus3.2.1:10:1:132174527:1	89663579	89682489	D	pleckstrin homology domain containing, family G (with RhoGef domain) member 3 [Source:HGNC Symbol;Acc:HGNC:20364]
ENSCJAG00000018937	KNOWN_BY_PROJECTION	protein_coding	RNF17	chromosome:C_jacchus3.2.1:5:1:159171411:1	137792191	137901780	D	ring finger protein 17 [Source:HGNC Symbol;Acc:HGNC:10060]
ENSCJAG00000002789	KNOWN_BY_PROJECTION	protein_coding	SLC2A12	chromosome:C_jacchus3.2.1:4:1:171630274:1	134416531	134486919	R	solute carrier family 2 (facilitated glucose transporter), member 12 [Source:HGNC Symbol;Acc:HGNC:18067]
ENSCJAG00000019629	KNOWN_BY_PROJECTION	protein_coding	SPTB	chromosome:C_jacchus3.2.1:10:1:132174527:1	89688404	89826014	R	spectrin, beta, erythrocytic [Source:HGNC Symbol;Acc:HGNC:11274]
ENSCJAG00000009763	KNOWN_BY_PROJECTION	protein_coding	AIM1L	chromosome:C_jacchus3.2.1:7:1:155834243:1	60364211	60384741	R	absent in melanoma 1-like [Source:HGNC Symbol;Acc:HGNC:17295]
ENSCJAG00000009793	KNOWN_BY_PROJECTION	protein_coding	ZNF683	chromosome:C_jacchus3.2.1:7:1:155834243:1	60401844	60410305	R	zinc finger protein 683 [Source:HGNC Symbol;Acc:HGNC:28495]
ENSCJAG00000009796	NOVEL	protein_coding	ENSCJAG00000009796	chromosome:C_jacchus3.2.1:7:1:155834243:1	60458377	60473397	D	<no descrition>
ENSCJAG00000009799	KNOWN	protein_coding	ENSCJAG00000009799	chromosome:C_jacchus3.2.1:7:1:155834243:1	60485146	60486183	D	Thymosin beta-10 {ECO:0000313|EMBL:JAB17651.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041042}  [Source:UniProtKB/TrEMBL;Acc:F7FGR8]
ENSCJAG00000009802	KNOWN	protein_coding	DHDDS	chromosome:C_jacchus3.2.1:7:1:155834243:1	60495099	60535347	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035864}  [Source:UniProtKB/TrEMBL;Acc:F7GX58]
ENSCJAG00000037406	NOVEL	protein_coding	ENSCJAG00000037406	chromosome:C_jacchus3.2.1:22:1:49145316:1	34009867	34047666	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052223}  [Source:UniProtKB/TrEMBL;Acc:F7ILG7]
ENSCJAG00000009825	NOVEL	protein_coding	ENSCJAG00000009825	chromosome:C_jacchus3.2.1:7:1:155834243:1	60594595	60595130	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018019}  [Source:UniProtKB/TrEMBL;Acc:F7H1M3]
ENSCJAG00000037941	KNOWN_BY_PROJECTION	protein_coding	LTBP4	chromosome:C_jacchus3.2.1:22:1:49145316:1	34014434	34055301	D	latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
ENSCJAG00000009919	KNOWN_BY_PROJECTION	protein_coding	RPS6KA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	60618117	60648255	D	ribosomal protein S6 kinase, 90kDa, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:10430]
ENSCJAG00000005146	KNOWN	protein_coding	B4GALT3	chromosome:C_jacchus3.2.1:18:1:47448759:1	14699675	14706183	R	Beta-1,4-galactosyltransferase 3 {ECO:0000313|EMBL:JAB08905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009483}  [Source:UniProtKB/TrEMBL;Acc:F7EVE3]
ENSCJAG00000009833	KNOWN_BY_PROJECTION	protein_coding	ARID1A	chromosome:C_jacchus3.2.1:7:1:155834243:1	60660126	60876719	D	AT rich interactive domain 1A (SWI-like) [Source:HGNC Symbol;Acc:HGNC:11110]
ENSCJAG00000002727	KNOWN	protein_coding	SGK1	chromosome:C_jacchus3.2.1:4:1:171630274:1	134621364	134776222	R	Serine/threonine-protein kinase Sgk1 isoform 1 {ECO:0000313|EMBL:JAB10170.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005042}  [Source:UniProtKB/TrEMBL;Acc:F7I0Y6]
ENSCJAG00000018946	KNOWN_BY_PROJECTION	protein_coding	CENPJ	chromosome:C_jacchus3.2.1:5:1:159171411:1	137904219	137935297	R	centromere protein J [Source:HGNC Symbol;Acc:HGNC:17272]
ENSCJAG00000000131	NOVEL	pseudogene	ENSCJAG00000000131	chromosome:C_jacchus3.2.1:5:1:159171411:1	138062664	138064499	D	<no descrition>
ENSCJAG00000004966	KNOWN	protein_coding	NDUFS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	14729421	14745576	D	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB06274.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009294}  [Source:UniProtKB/TrEMBL;Acc:F7EGV5]
ENSCJAG00000009949	KNOWN	protein_coding	PIGV	chromosome:C_jacchus3.2.1:7:1:155834243:1	60883159	60893655	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052026}  [Source:UniProtKB/TrEMBL;Acc:F7IJB4]
ENSCJAG00000031198	NOVEL	protein_coding	ENSCJAG00000031198	chromosome:C_jacchus3.2.1:22:1:49145316:1	34022115	34036259	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017545}  [Source:UniProtKB/TrEMBL;Acc:F7IH17]
ENSCJAG00000004781	NOVEL	protein_coding	ENSCJAG00000004781	chromosome:C_jacchus3.2.1:22:1:49145316:1	34053266	34063639	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044686}  [Source:UniProtKB/TrEMBL;Acc:F7HBL3]
ENSCJAG00000014829	KNOWN	protein_coding	NUMBL	chromosome:C_jacchus3.2.1:22:1:49145316:1	34079393	34085352	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027304}  [Source:UniProtKB/TrEMBL;Acc:F7E9Z2]
ENSCJAG00000009969	KNOWN_BY_PROJECTION	protein_coding	ZDHHC18	chromosome:C_jacchus3.2.1:7:1:155834243:1	60923356	60947427	D	zinc finger, DHHC-type containing 18 [Source:HGNC Symbol;Acc:HGNC:20712]
ENSCJAG00000014833	KNOWN_BY_PROJECTION	protein_coding	ADCK4	chromosome:C_jacchus3.2.1:22:1:49145316:1	34106969	34132806	R	aarF domain containing kinase 4 [Source:HGNC Symbol;Acc:HGNC:19041]
ENSCJAG00000009981	KNOWN_BY_PROJECTION	protein_coding	GPN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	60972983	60989351	R	GPN-loop GTPase 2 [Source:HGNC Symbol;Acc:HGNC:25513]
ENSCJAG00000019200	KNOWN	protein_coding	AMER2	chromosome:C_jacchus3.2.1:5:1:159171411:1	138139555	138143121	R	APC membrane recruitment protein 2 isoform 2 {ECO:0000313|EMBL:JAB19663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035647}  [Source:UniProtKB/TrEMBL;Acc:F7H2Q2]
ENSCJAG00000010000	KNOWN_BY_PROJECTION	protein_coding	GPATCH3	chromosome:C_jacchus3.2.1:7:1:155834243:1	60990303	60998260	R	G patch domain containing 3 [Source:HGNC Symbol;Acc:HGNC:25720]
ENSCJAG00000019209	KNOWN	protein_coding	MTMR6	chromosome:C_jacchus3.2.1:5:1:159171411:1	138201483	138262014	R	Myotubularin-related protein 6 {ECO:0000313|EMBL:JAB09740.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035659}  [Source:UniProtKB/TrEMBL;Acc:F7GXL9]
ENSCJAG00000019689	KNOWN_BY_PROJECTION	protein_coding	CHURC1-FNTB	chromosome:C_jacchus3.2.1:10:1:132174527:1	89858113	90009880	D	CHURC1-FNTB readthrough [Source:HGNC Symbol;Acc:HGNC:42960]
ENSCJAG00000010029	KNOWN_BY_PROJECTION	protein_coding	NR0B2	chromosome:C_jacchus3.2.1:7:1:155834243:1	61010453	61013216	R	nuclear receptor subfamily 0, group B, member 2 [Source:HGNC Symbol;Acc:HGNC:7961]
ENSCJAG00000010033	KNOWN	protein_coding	NUDC	chromosome:C_jacchus3.2.1:7:1:155834243:1	61026874	61046794	D	Nuclear migration protein nudC {ECO:0000313|EMBL:JAB05817.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018508}  [Source:UniProtKB/TrEMBL;Acc:F7F437]
ENSCJAG00000019696	NOVEL	protein_coding	ENSCJAG00000019696	chromosome:C_jacchus3.2.1:10:1:132174527:1	89894006	89918270	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036584}  [Source:UniProtKB/TrEMBL;Acc:F7F8T8]
ENSCJAG00000019702	KNOWN	protein_coding	MAX	chromosome:C_jacchus3.2.1:10:1:132174527:1	90024842	90053299	R	Protein max isoform c {ECO:0000313|EMBL:JAB35940.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036602}  [Source:UniProtKB/TrEMBL;Acc:F6PZ87]
ENSCJAG00000004958	KNOWN_BY_PROJECTION	protein_coding	FCER1G	chromosome:C_jacchus3.2.1:18:1:47448759:1	14746172	14752166	D	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide [Source:HGNC Symbol;Acc:HGNC:3611]
ENSCJAG00000035992	NOVEL	protein_coding	ENSCJAG00000035992	chromosome:C_jacchus3.2.1:22:1:49145316:1	34122427	34125173	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052431}  [Source:UniProtKB/TrEMBL;Acc:F7I757]
ENSCJAG00000037304	NOVEL	protein_coding	ENSCJAG00000037304	chromosome:C_jacchus3.2.1:22:1:49145316:1	34126609	34127535	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052050}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ8]
ENSCJAG00000014755	KNOWN	protein_coding	ITPKC	chromosome:C_jacchus3.2.1:22:1:49145316:1	34133031	34156183	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027169}  [Source:UniProtKB/TrEMBL;Acc:F7H5F7]
ENSCJAG00000019231	KNOWN	protein_coding	NUPL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	138276355	138316841	D	Nucleoporin p58/p45 isoform a {ECO:0000313|EMBL:JAB01795.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035743}  [Source:UniProtKB/TrEMBL;Acc:F7F843]
ENSCJAG00000007652	KNOWN_BY_PROJECTION	protein_coding	ALDH8A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	135401922	135437681	R	aldehyde dehydrogenase 8 family, member A1 [Source:HGNC Symbol;Acc:HGNC:15471]
ENSCJAG00000014857	KNOWN_BY_PROJECTION	protein_coding	C19orf54	chromosome:C_jacchus3.2.1:22:1:49145316:1	34157444	34166340	R	chromosome 19 open reading frame 54 [Source:HGNC Symbol;Acc:HGNC:24758]
ENSCJAG00000007678	KNOWN	protein_coding	HBS1L	chromosome:C_jacchus3.2.1:4:1:171630274:1	135453295	135544726	R	HBS1-like protein isoform 1 {ECO:0000313|EMBL:JAB03318.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014443}  [Source:UniProtKB/TrEMBL;Acc:F7HXL9]
ENSCJAG00000010076	KNOWN	protein_coding	KDF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	61048983	61058692	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018519}; Uncharacterized protein C1orf172 {ECO:0000313|EMBL:JAB01689.1}  [Source:UniProtKB/TrEMBL;Acc:F7EQY1]
ENSCJAG00000004950	KNOWN	protein_coding	APOA2	chromosome:C_jacchus3.2.1:18:1:47448759:1	14753158	14754466	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009036}  [Source:UniProtKB/TrEMBL;Acc:F7I8T6]
ENSCJAG00000021982	KNOWN_BY_PROJECTION	protein_coding	TRNP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	61092465	61093326	D	TMF1-regulated nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:34348]
ENSCJAG00000010081	KNOWN	protein_coding	FAM46B	chromosome:C_jacchus3.2.1:7:1:155834243:1	61103670	61111399	R	Protein FAM46B {ECO:0000313|EMBL:JAB05670.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018530}  [Source:UniProtKB/TrEMBL;Acc:F7EQ59]
ENSCJAG00000004919	KNOWN	protein_coding	TOMM40L	chromosome:C_jacchus3.2.1:18:1:47448759:1	14756558	14775953	D	Mitochondrial import receptor subunit TOM40B {ECO:0000313|EMBL:JAB03927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042730}  [Source:UniProtKB/TrEMBL;Acc:F6W8K1]
ENSCJAG00000009083	NOVEL	pseudogene	ENSCJAG00000009083	chromosome:C_jacchus3.2.1:7:1:155834243:1	61190227	61190498	D	<no descrition>
ENSCJAG00000009011	KNOWN	protein_coding	SLC9A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	61204907	61265926	R	Sodium/hydrogen exchanger {ECO:0000256|RuleBase:RU003722}  [Source:UniProtKB/TrEMBL;Acc:F6XDW3]
ENSCJAG00000019263	KNOWN	protein_coding	ATP8A2	chromosome:C_jacchus3.2.1:5:1:159171411:1	138483484	139004475	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035648}  [Source:UniProtKB/TrEMBL;Acc:F7H2P9]
ENSCJAG00000014865	NOVEL	protein_coding	ENSCJAG00000014865	chromosome:C_jacchus3.2.1:22:1:49145316:1	34167273	34181947	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027383}  [Source:UniProtKB/TrEMBL;Acc:F7HA81]
ENSCJAG00000014879	NOVEL	protein_coding	ENSCJAG00000014879	chromosome:C_jacchus3.2.1:22:1:49145316:1	34190837	34193386	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027402}  [Source:UniProtKB/TrEMBL;Acc:F7GZN1]
ENSCJAG00000014887	KNOWN_BY_PROJECTION	protein_coding	EGLN2	chromosome:C_jacchus3.2.1:22:1:49145316:1	34213024	34221852	D	egl-9 family hypoxia-inducible factor 2 [Source:HGNC Symbol;Acc:HGNC:14660]
ENSCJAG00000014892	NOVEL	pseudogene	ENSCJAG00000014892	chromosome:C_jacchus3.2.1:22:1:49145316:1	34226826	34227252	D	<no descrition>
ENSCJAG00000034902	KNOWN_BY_PROJECTION	protein_coding	CYP2F1	chromosome:C_jacchus3.2.1:22:1:49145316:1	34231552	34248251	R	cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2632]
ENSCJAG00000036060	NOVEL	protein_coding	ENSCJAG00000036060	chromosome:C_jacchus3.2.1:22:1:49145316:1	34271998	34279864	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037285}  [Source:UniProtKB/TrEMBL;Acc:F6UW70]
ENSCJAG00000004783	KNOWN_BY_PROJECTION	protein_coding	NR1I3	chromosome:C_jacchus3.2.1:18:1:47448759:1	14760455	14768618	R	nuclear receptor subfamily 1, group I, member 3 [Source:HGNC Symbol;Acc:HGNC:7969]
ENSCJAG00000020052	NOVEL	protein_coding	ENSCJAG00000020052	chromosome:C_jacchus3.2.1:22:1:49145316:1	34295862	34307072	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037313}  [Source:UniProtKB/TrEMBL;Acc:F7B0K7]
ENSCJAG00000021845	NOVEL	pseudogene	ENSCJAG00000021845	chromosome:C_jacchus3.2.1:7:1:155834243:1	61271423	61271694	R	<no descrition>
ENSCJAG00000009088	KNOWN_BY_PROJECTION	protein_coding	WDTC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	61393148	61447134	D	WD and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:29175]
ENSCJAG00000031382	KNOWN_BY_PROJECTION	protein_coding	FAM177B	chromosome:C_jacchus3.2.1:10:1:132174527:1	90096343	90103517	D	family with sequence similarity 177, member B [Source:HGNC Symbol;Acc:HGNC:34395]
ENSCJAG00000033605	NOVEL	protein_coding	ENSCJAG00000033605	chromosome:C_jacchus3.2.1:10:1:132174527:1	90270740	90271959	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048559}  [Source:UniProtKB/TrEMBL;Acc:F7F8Z8]
ENSCJAG00000009112	KNOWN_BY_PROJECTION	protein_coding	TMEM222	chromosome:C_jacchus3.2.1:7:1:155834243:1	61460679	61474520	D	transmembrane protein 222 [Source:HGNC Symbol;Acc:HGNC:25363]
ENSCJAG00000003828	NOVEL	protein_coding	ENSCJAG00000003828	chromosome:C_jacchus3.2.1:10:1:132174527:1	90323794	90324638	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052197}  [Source:UniProtKB/TrEMBL;Acc:F7HVQ5]
ENSCJAG00000003756	KNOWN	protein_coding	FUT8	chromosome:C_jacchus3.2.1:10:1:132174527:1	90462287	90821769	D	Alpha-(1,6)-fucosyltransferase {ECO:0000256|PIRNR:PIRNR000472}  [Source:UniProtKB/TrEMBL;Acc:F7H5G9]
ENSCJAG00000009140	KNOWN	protein_coding	SYTL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	61479001	61490267	D	Synaptotagmin-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB14819.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016792}  [Source:UniProtKB/TrEMBL;Acc:F7A397]
ENSCJAG00000009171	KNOWN_BY_PROJECTION	protein_coding	MAP3K6	chromosome:C_jacchus3.2.1:7:1:155834243:1	61491125	61502041	R	mitogen-activated protein kinase kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6858]
ENSCJAG00000020079	NOVEL	pseudogene	ENSCJAG00000020079	chromosome:C_jacchus3.2.1:22:1:49145316:1	34315357	34315975	R	<no descrition>
ENSCJAG00000020082	KNOWN_BY_PROJECTION	protein_coding	CYP2B6	chromosome:C_jacchus3.2.1:22:1:49145316:1	34327282	34340849	R	cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:2615]
ENSCJAG00000020085	KNOWN_BY_PROJECTION	protein_coding	CYP2S1	chromosome:C_jacchus3.2.1:22:1:49145316:1	34373545	34390024	D	cytochrome P450, family 2, subfamily S, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:15654]
ENSCJAG00000020090	KNOWN_BY_PROJECTION	protein_coding	AXL	chromosome:C_jacchus3.2.1:22:1:49145316:1	34401129	34435294	D	AXL receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:905]
ENSCJAG00000032170	NOVEL	pseudogene	ENSCJAG00000032170	chromosome:C_jacchus3.2.1:10:1:132174527:1	90548687	90548936	R	<no descrition>
ENSCJAG00000032771	NOVEL	protein_coding	ENSCJAG00000032771	chromosome:C_jacchus3.2.1:10:1:132174527:1	91095308	91096015	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046593}  [Source:UniProtKB/TrEMBL;Acc:F7I1E0]
ENSCJAG00000015520	KNOWN	protein_coding	GPHN	chromosome:C_jacchus3.2.1:10:1:132174527:1	91626630	92345898	D	Gephyrin isoform 1 {ECO:0000313|EMBL:JAB03677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028683}  [Source:UniProtKB/TrEMBL;Acc:F6UFI5]
ENSCJAG00000009233	KNOWN	protein_coding	FCN3	chromosome:C_jacchus3.2.1:7:1:155834243:1	61503541	61507434	R	Ficolin-3 isoform 1 {ECO:0000313|EMBL:JAB13331.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016922}  [Source:UniProtKB/TrEMBL;Acc:F6UDF5]
ENSCJAG00000034470	NOVEL	pseudogene	ENSCJAG00000034470	chromosome:C_jacchus3.2.1:5:1:159171411:1	138910325	138910733	D	<no descrition>
ENSCJAG00000019281	KNOWN	protein_coding	SHISA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	139025149	139031523	R	Protein shisa-2 homolog {ECO:0000313|EMBL:JAB41492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035783}  [Source:UniProtKB/TrEMBL;Acc:F7E3J6]
ENSCJAG00000009245	KNOWN	protein_coding	CD164L2	chromosome:C_jacchus3.2.1:7:1:155834243:1	61512887	61517322	R	CD164 sialomucin-like 2 protein {ECO:0000313|EMBL:JAB02695.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016943}  [Source:UniProtKB/TrEMBL;Acc:F7CH90]
ENSCJAG00000019285	KNOWN	protein_coding	RNF6	chromosome:C_jacchus3.2.1:5:1:159171411:1	139127167	139136357	R	E3 ubiquitin-protein ligase RNF6 {ECO:0000313|EMBL:JAB06347.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049105}  [Source:UniProtKB/TrEMBL;Acc:F7CFL8]
ENSCJAG00000009260	KNOWN_BY_PROJECTION	protein_coding	GPR3	chromosome:C_jacchus3.2.1:7:1:155834243:1	61527274	61530438	D	G protein-coupled receptor 3 [Source:HGNC Symbol;Acc:HGNC:4484]
ENSCJAG00000009264	KNOWN	protein_coding	WASF2	chromosome:C_jacchus3.2.1:7:1:155834243:1	61539332	61625662	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016987}; Wiskott-Aldrich syndrome protein family member 2 isoform 1 {ECO:0000313|EMBL:JAB07657.1}  [Source:UniProtKB/TrEMBL;Acc:F7BLL1]
ENSCJAG00000020106	KNOWN	protein_coding	HNRNPUL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	34437925	34483398	D	Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform a {ECO:0000313|EMBL:JAB10824.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037450}  [Source:UniProtKB/TrEMBL;Acc:F7BZ79]
ENSCJAG00000019296	KNOWN_BY_PROJECTION	protein_coding	CDK8	chromosome:C_jacchus3.2.1:5:1:159171411:1	139177101	139325131	D	cyclin-dependent kinase 8 [Source:HGNC Symbol;Acc:HGNC:1779]
ENSCJAG00000009280	KNOWN	protein_coding	AHDC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	61674406	61701850	R	AT-hook DNA-binding motif-containing protein 1 {ECO:0000313|EMBL:JAB04374.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017013}  [Source:UniProtKB/TrEMBL;Acc:F7I0Z6]
ENSCJAG00000009293	KNOWN_BY_PROJECTION	protein_coding	FGR	chromosome:C_jacchus3.2.1:7:1:155834243:1	61760007	61783408	R	FGR proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:3697]
ENSCJAG00000009319	KNOWN_BY_PROJECTION	protein_coding	IFI6	chromosome:C_jacchus3.2.1:7:1:155834243:1	61818926	61825347	R	interferon, alpha-inducible protein 6 [Source:HGNC Symbol;Acc:HGNC:4054]
ENSCJAG00000019325	KNOWN	protein_coding	WASF3	chromosome:C_jacchus3.2.1:5:1:159171411:1	139549757	139620007	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035899}; Wiskott-Aldrich syndrome protein family member 3 {ECO:0000313|EMBL:JAB04320.1}  [Source:UniProtKB/TrEMBL;Acc:F7GRX8]
ENSCJAG00000009327	KNOWN	protein_coding	FAM76A	chromosome:C_jacchus3.2.1:7:1:155834243:1	61875599	61914923	D	Protein FAM76A isoform 4 {ECO:0000313|EMBL:JAB04111.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017119}  [Source:UniProtKB/TrEMBL;Acc:F7IJP9]
ENSCJAG00000019338	KNOWN_BY_PROJECTION	protein_coding	GPR12	chromosome:C_jacchus3.2.1:5:1:159171411:1	139682561	139685109	R	G protein-coupled receptor 12 [Source:HGNC Symbol;Acc:HGNC:4466]
ENSCJAG00000019344	KNOWN	protein_coding	USP12	chromosome:C_jacchus3.2.1:5:1:159171411:1	140011818	140122082	R	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7FL43]
ENSCJAG00000033406	NOVEL	pseudogene	ENSCJAG00000033406	chromosome:C_jacchus3.2.1:4:1:171630274:1	135601097	135601659	D	<no descrition>
ENSCJAG00000009378	KNOWN	protein_coding	STX12	chromosome:C_jacchus3.2.1:7:1:155834243:1	61927270	61980687	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017202}  [Source:UniProtKB/TrEMBL;Acc:F7I342]
ENSCJAG00000019355	KNOWN_BY_PROJECTION	protein_coding	RPL21	chromosome:C_jacchus3.2.1:5:1:159171411:1	140195577	140200082	D	ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
ENSCJAG00000020155	KNOWN	protein_coding	BCKDHA	chromosome:C_jacchus3.2.1:22:1:49145316:1	34485736	34597612	D	Coiled-coil domain-containing protein 97 {ECO:0000313|EMBL:JAB18144.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037460}  [Source:UniProtKB/TrEMBL;Acc:F7BYD5]
ENSCJAG00000019369	KNOWN_BY_PROJECTION	protein_coding	RASL11A	chromosome:C_jacchus3.2.1:5:1:159171411:1	140213797	140217143	D	RAS-like, family 11, member A [Source:HGNC Symbol;Acc:HGNC:23802]
ENSCJAG00000004777	KNOWN_BY_PROJECTION	protein_coding	PCP4L1	chromosome:C_jacchus3.2.1:18:1:47448759:1	14784838	14808523	D	Purkinje cell protein 4 like 1 [Source:HGNC Symbol;Acc:HGNC:20448]
ENSCJAG00000004767	KNOWN_BY_PROJECTION	protein_coding	MPZ	chromosome:C_jacchus3.2.1:18:1:47448759:1	14826576	14831241	R	myelin protein zero [Source:HGNC Symbol;Acc:HGNC:7225]
ENSCJAG00000019372	NOVEL	protein_coding	ENSCJAG00000019372	chromosome:C_jacchus3.2.1:5:1:159171411:1	140259675	140261297	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035958}  [Source:UniProtKB/TrEMBL;Acc:F7EFR5]
ENSCJAG00000009406	KNOWN	protein_coding	PPP1R8	chromosome:C_jacchus3.2.1:7:1:155834243:1	61985812	62005655	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050250}  [Source:UniProtKB/TrEMBL;Acc:F7EZF6]
ENSCJAG00000019373	KNOWN_BY_PROJECTION	protein_coding	GTF3A	chromosome:C_jacchus3.2.1:5:1:159171411:1	140424476	140437768	D	general transcription factor IIIA [Source:HGNC Symbol;Acc:HGNC:4662]
ENSCJAG00000004757	KNOWN	protein_coding	SDHC	chromosome:C_jacchus3.2.1:18:1:47448759:1	14836379	14884378	D	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB07684.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008654}  [Source:UniProtKB/TrEMBL;Acc:F7ICW3]
ENSCJAG00000004766	NOVEL	pseudogene	ENSCJAG00000004766	chromosome:C_jacchus3.2.1:18:1:47448759:1	14872641	14874339	D	<no descrition>
ENSCJAG00000019378	KNOWN_BY_PROJECTION	protein_coding	MTIF3	chromosome:C_jacchus3.2.1:5:1:159171411:1	140437700	140548978	R	mitochondrial translational initiation factor 3 [Source:HGNC Symbol;Acc:HGNC:29788]
ENSCJAG00000019379	KNOWN	protein_coding	LNX2	chromosome:C_jacchus3.2.1:5:1:159171411:1	140543390	140617640	R	Ligand of Numb protein X 2 {ECO:0000313|EMBL:JAB07796.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035992}  [Source:UniProtKB/TrEMBL;Acc:F7DLM9]
ENSCJAG00000004753	NOVEL	protein_coding	ENSCJAG00000004753	chromosome:C_jacchus3.2.1:18:1:47448759:1	14885828	14890185	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008639}  [Source:UniProtKB/TrEMBL;Acc:F7IFB9]
ENSCJAG00000004742	NOVEL	protein_coding	ENSCJAG00000004742	chromosome:C_jacchus3.2.1:18:1:47448759:1	15095110	15104674	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008624}  [Source:UniProtKB/TrEMBL;Acc:F7IHM1]
ENSCJAG00000009445	KNOWN_BY_PROJECTION	protein_coding	THEMIS2	chromosome:C_jacchus3.2.1:7:1:155834243:1	62041712	62061265	D	thymocyte selection associated family member 2 [Source:HGNC Symbol;Acc:HGNC:16839]
ENSCJAG00000007798	KNOWN	protein_coding	MYB	chromosome:C_jacchus3.2.1:4:1:171630274:1	135680314	135718112	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014895}  [Source:UniProtKB/TrEMBL;Acc:F7I1Z6]
ENSCJAG00000019386	KNOWN	protein_coding	POLR1D	chromosome:C_jacchus3.2.1:5:1:159171411:1	140618022	140663511	D	DNA-directed RNA polymerases I and III subunit RPAC2 isoform 2 {ECO:0000313|EMBL:JAB04974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042868}  [Source:UniProtKB/TrEMBL;Acc:F6Z580]
ENSCJAG00000009473	KNOWN	protein_coding	RPA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	62065526	62091722	R	Replication protein A 32 kDa subunit {ECO:0000313|EMBL:JAB04053.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017369}  [Source:UniProtKB/TrEMBL;Acc:F7IA63]
ENSCJAG00000004736	NOVEL	protein_coding	ENSCJAG00000004736	chromosome:C_jacchus3.2.1:18:1:47448759:1	15109631	15111812	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008600}  [Source:UniProtKB/TrEMBL;Acc:F7IJY1]
ENSCJAG00000004721	NOVEL	protein_coding	ENSCJAG00000004721	chromosome:C_jacchus3.2.1:18:1:47448759:1	15124063	15134552	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008591}  [Source:UniProtKB/TrEMBL;Acc:F7IPP7]
ENSCJAG00000009490	KNOWN_BY_PROJECTION	protein_coding	SMPDL3B	chromosome:C_jacchus3.2.1:7:1:155834243:1	62113296	62139239	D	sphingomyelin phosphodiesterase, acid-like 3B [Source:HGNC Symbol;Acc:HGNC:21416]
ENSCJAG00000009496	KNOWN_BY_PROJECTION	protein_coding	XKR8	chromosome:C_jacchus3.2.1:7:1:155834243:1	62140174	62148454	D	XK, Kell blood group complex subunit-related family, member 8 [Source:HGNC Symbol;Acc:HGNC:25508]
ENSCJAG00000019388	KNOWN_BY_PROJECTION	protein_coding	GSX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	140769450	140770837	D	GS homeobox 1 [Source:HGNC Symbol;Acc:HGNC:20374]
ENSCJAG00000019391	NOVEL	pseudogene	ENSCJAG00000019391	chromosome:C_jacchus3.2.1:5:1:159171411:1	140852041	140853093	D	<no descrition>
ENSCJAG00000019393	KNOWN_BY_PROJECTION	protein_coding	PDX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	140891598	140897439	D	pancreatic and duodenal homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6107]
ENSCJAG00000009498	KNOWN_BY_PROJECTION	protein_coding	EYA3	chromosome:C_jacchus3.2.1:7:1:155834243:1	62156179	62260389	R	EYA transcriptional coactivator and phosphatase 3 [Source:HGNC Symbol;Acc:HGNC:3521]
ENSCJAG00000019398	KNOWN_BY_PROJECTION	protein_coding	CDX2	chromosome:C_jacchus3.2.1:5:1:159171411:1	140931644	140936996	R	caudal type homeobox 2 [Source:HGNC Symbol;Acc:HGNC:1806]
ENSCJAG00000019404	KNOWN_BY_PROJECTION	protein_coding	URAD	chromosome:C_jacchus3.2.1:5:1:159171411:1	140947080	140957673	R	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase [Source:HGNC Symbol;Acc:HGNC:17785]
ENSCJAG00000019405	KNOWN_BY_PROJECTION	protein_coding	FLT3	chromosome:C_jacchus3.2.1:5:1:159171411:1	140975049	141047594	R	fms-related tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3765]
ENSCJAG00000034780	NOVEL	protein_coding	ENSCJAG00000034780	chromosome:C_jacchus3.2.1:7:1:155834243:1	62291874	62292736	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051554}  [Source:UniProtKB/TrEMBL;Acc:F6VHT8]
ENSCJAG00000022642	KNOWN_BY_PROJECTION	protein_coding	PTAFR	chromosome:C_jacchus3.2.1:7:1:155834243:1	62335452	62378793	R	platelet-activating factor receptor [Source:HGNC Symbol;Acc:HGNC:9582]
ENSCJAG00000004627	KNOWN_BY_PROJECTION	protein_coding	FCRLB	chromosome:C_jacchus3.2.1:18:1:47448759:1	15128209	15224006	D	Fc receptor-like B [Source:HGNC Symbol;Acc:HGNC:26431]
ENSCJAG00000009556	KNOWN	protein_coding	DNAJC8	chromosome:C_jacchus3.2.1:7:1:155834243:1	62384878	62412430	R	DnaJ homolog subfamily C member 8 {ECO:0000313|EMBL:JAB11004.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017537}  [Source:UniProtKB/TrEMBL;Acc:F7IH53]
ENSCJAG00000009581	KNOWN	protein_coding	ATPIF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	62419706	62422026	D	ATPase inhibitor, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB03195.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017579}  [Source:UniProtKB/TrEMBL;Acc:F7IA10]
ENSCJAG00000009602	KNOWN	protein_coding	SESN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	62442654	62463774	D	Sestrin-2 {ECO:0000313|EMBL:JAB12301.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017646}  [Source:UniProtKB/TrEMBL;Acc:F7HY37]
ENSCJAG00000033913	NOVEL	protein_coding	ENSCJAG00000033913	chromosome:C_jacchus3.2.1:5:1:159171411:1	141090105	141092985	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051418}  [Source:UniProtKB/TrEMBL;Acc:F7CG01]
ENSCJAG00000019421	KNOWN	protein_coding	PAN3	chromosome:C_jacchus3.2.1:5:1:159171411:1	141116905	141282557	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036087}  [Source:UniProtKB/TrEMBL;Acc:F7FBS4]
ENSCJAG00000009637	KNOWN	protein_coding	MED18	chromosome:C_jacchus3.2.1:7:1:155834243:1	62515756	62649464	D	Mediator of RNA polymerase II transcription subunit 18 {ECO:0000313|EMBL:JAB07269.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017653}  [Source:UniProtKB/TrEMBL;Acc:F7HVT1]
ENSCJAG00000009642	KNOWN_BY_PROJECTION	protein_coding	PHACTR4	chromosome:C_jacchus3.2.1:7:1:155834243:1	62553425	62684943	D	phosphatase and actin regulator 4 [Source:HGNC Symbol;Acc:HGNC:25793]
ENSCJAG00000009684	NOVEL	protein_coding	ENSCJAG00000009684	chromosome:C_jacchus3.2.1:7:1:155834243:1	62628675	62629259	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017735}  [Source:UniProtKB/TrEMBL;Acc:F7IC39]
ENSCJAG00000009686	KNOWN	protein_coding	RCC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	62694270	62724127	D	Callithrix jacchus regulator of chromosome condensation 1 (RCC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205208]
ENSCJAG00000004688	NOVEL	protein_coding	ENSCJAG00000004688	chromosome:C_jacchus3.2.1:18:1:47448759:1	15165077	15182218	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008519}  [Source:UniProtKB/TrEMBL;Acc:F7HYV9]
ENSCJAG00000009717	KNOWN	protein_coding	TRNAU1AP	chromosome:C_jacchus3.2.1:7:1:155834243:1	62741177	62771024	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017806}; tRNA selenocysteine 1-associated protein 1 {ECO:0000313|EMBL:JAB10589.1}  [Source:UniProtKB/TrEMBL;Acc:F7HVM3]
ENSCJAG00000020149	KNOWN	protein_coding	TGFB1	chromosome:C_jacchus3.2.1:22:1:49145316:1	34505817	34527958	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037469}  [Source:UniProtKB/TrEMBL;Acc:F7BHY6]
ENSCJAG00000009732	NOVEL	protein_coding	ENSCJAG00000009732	chromosome:C_jacchus3.2.1:7:1:155834243:1	62773064	62773482	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052245}  [Source:UniProtKB/TrEMBL;Acc:F7IJ66]
ENSCJAG00000009733	KNOWN_BY_PROJECTION	protein_coding	RAB42	chromosome:C_jacchus3.2.1:7:1:155834243:1	62780583	62782151	D	RAB42, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:28702]
ENSCJAG00000004663	KNOWN_BY_PROJECTION	protein_coding	FCRLA	chromosome:C_jacchus3.2.1:18:1:47448759:1	15197183	15204567	D	Fc receptor-like A [Source:HGNC Symbol;Acc:HGNC:18504]
ENSCJAG00000009742	KNOWN	protein_coding	TAF12	chromosome:C_jacchus3.2.1:7:1:155834243:1	62791674	62845611	R	Transcription initiation factor TFIID subunit 12 {ECO:0000313|EMBL:JAB02872.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017863}  [Source:UniProtKB/TrEMBL;Acc:F7HKI7]
ENSCJAG00000020151	KNOWN	protein_coding	B9D2	chromosome:C_jacchus3.2.1:22:1:49145316:1	34528120	34539189	R	B9 domain-containing protein 2 {ECO:0000313|EMBL:JAB10265.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037473}  [Source:UniProtKB/TrEMBL;Acc:F7BH58]
ENSCJAG00000020152	KNOWN_BY_PROJECTION	protein_coding	EXOSC5	chromosome:C_jacchus3.2.1:22:1:49145316:1	34556144	34563810	R	exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]
ENSCJAG00000020188	NOVEL	pseudogene	ENSCJAG00000020188	chromosome:C_jacchus3.2.1:22:1:49145316:1	34598158	34599285	R	<no descrition>
ENSCJAG00000020190	KNOWN	protein_coding	ATP5SL	chromosome:C_jacchus3.2.1:22:1:49145316:1	34610692	34619839	R	ATP synthase subunit s-like protein isoform 4 {ECO:0000313|EMBL:JAB01780.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037546}  [Source:UniProtKB/TrEMBL;Acc:F6X4U9]
ENSCJAG00000009754	KNOWN	protein_coding	GMEB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	62890868	62928187	D	Glucocorticoid modulatory element-binding protein 1 isoform 1 {ECO:0000313|EMBL:JAB10367.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017965}  [Source:UniProtKB/TrEMBL;Acc:F7I7E1]
ENSCJAG00000020204	KNOWN_BY_PROJECTION	protein_coding	ERICH4	chromosome:C_jacchus3.2.1:22:1:49145316:1	34623970	34625607	D	glutamate-rich 4 [Source:HGNC Symbol;Acc:HGNC:34497]
ENSCJAG00000020206	NOVEL	protein_coding	ENSCJAG00000020206	chromosome:C_jacchus3.2.1:22:1:49145316:1	34660131	34665551	R	<no descrition>
ENSCJAG00000019447	KNOWN	protein_coding	FLT1	chromosome:C_jacchus3.2.1:5:1:159171411:1	141286639	141472085	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036153}; Vascular endothelial growth factor receptor 1 isoform 2 {ECO:0000313|EMBL:JAB38839.1}  [Source:UniProtKB/TrEMBL;Acc:F7HE27]
ENSCJAG00000037018	NOVEL	protein_coding	ENSCJAG00000037018	chromosome:C_jacchus3.2.1:22:1:49145316:1	34680645	34734746	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052346}  [Source:UniProtKB/TrEMBL;Acc:F7IR63]
ENSCJAG00000020222	NOVEL	protein_coding	ENSCJAG00000020222	chromosome:C_jacchus3.2.1:22:1:49145316:1	34704656	34705703	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037588}  [Source:UniProtKB/TrEMBL;Acc:F6VEX5]
ENSCJAG00000020234	KNOWN_BY_PROJECTION	protein_coding	LYPD4	chromosome:C_jacchus3.2.1:22:1:49145316:1	34772849	34779431	R	LY6/PLAUR domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28659]
ENSCJAG00000009804	KNOWN	protein_coding	YTHDF2	chromosome:C_jacchus3.2.1:7:1:155834243:1	62948096	62978905	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018004}; YTH domain family protein 2 isoform 1 {ECO:0000313|EMBL:JAB06803.1}  [Source:UniProtKB/TrEMBL;Acc:F7H6U7]
ENSCJAG00000020238	KNOWN_BY_PROJECTION	protein_coding	DMRTC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	34779779	34786266	D	DMRT-like family C2 [Source:HGNC Symbol;Acc:HGNC:13911]
ENSCJAG00000015489	KNOWN_BY_PROJECTION	protein_coding	FAM71D	chromosome:C_jacchus3.2.1:10:1:132174527:1	92362239	92410125	D	family with sequence similarity 71, member D [Source:HGNC Symbol;Acc:HGNC:20101]
ENSCJAG00000009824	KNOWN	protein_coding	OPRD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	63025458	63084926	D	Delta-type opioid receptor {ECO:0000313|EMBL:JAB23500.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018015}  [Source:UniProtKB/TrEMBL;Acc:F7H1N2]
ENSCJAG00000004609	KNOWN_BY_PROJECTION	protein_coding	DUSP12	chromosome:C_jacchus3.2.1:18:1:47448759:1	15246400	15255149	D	dual specificity phosphatase 12 [Source:HGNC Symbol;Acc:HGNC:3067]
ENSCJAG00000020243	NOVEL	protein_coding	ENSCJAG00000020243	chromosome:C_jacchus3.2.1:22:1:49145316:1	34791819	34802247	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037633}  [Source:UniProtKB/TrEMBL;Acc:F7AXG4]
ENSCJAG00000009831	KNOWN	protein_coding	EPB41	chromosome:C_jacchus3.2.1:7:1:155834243:1	63107121	63332683	D	Protein 4.1 isoform 1 {ECO:0000313|EMBL:JAB31926.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018268}  [Source:UniProtKB/TrEMBL;Acc:F7G9A8]
ENSCJAG00000015513	NOVEL	pseudogene	ENSCJAG00000015513	chromosome:C_jacchus3.2.1:10:1:132174527:1	92365118	92365867	D	<no descrition>
ENSCJAG00000004572	KNOWN_BY_PROJECTION	protein_coding	ATF6	chromosome:C_jacchus3.2.1:18:1:47448759:1	15265169	15382087	D	activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791]
ENSCJAG00000015428	KNOWN	protein_coding	MPP5	chromosome:C_jacchus3.2.1:10:1:132174527:1	92420260	92536790	D	MAGUK p55 subfamily member 5 isoform 1 {ECO:0000313|EMBL:JAB36167.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028493}  [Source:UniProtKB/TrEMBL;Acc:F6UGM1]
ENSCJAG00000005599	NOVEL	pseudogene	ENSCJAG00000005599	chromosome:C_jacchus3.2.1:18:1:47448759:1	15460610	15461097	R	<no descrition>
ENSCJAG00000004556	KNOWN_BY_PROJECTION	protein_coding	OLFML2B	chromosome:C_jacchus3.2.1:18:1:47448759:1	15492172	15533454	R	olfactomedin-like 2B [Source:HGNC Symbol;Acc:HGNC:24558]
ENSCJAG00000004539	KNOWN	protein_coding	NOS1AP	chromosome:C_jacchus3.2.1:18:1:47448759:1	15588090	15893914	D	Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein isoform 1 {ECO:0000313|EMBL:JAB14825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008243}  [Source:UniProtKB/TrEMBL;Acc:F7ID76]
ENSCJAG00000020247	KNOWN_BY_PROJECTION	protein_coding	CD79A	chromosome:C_jacchus3.2.1:22:1:49145316:1	34810236	34815479	D	CD79a molecule, immunoglobulin-associated alpha [Source:HGNC Symbol;Acc:HGNC:1698]
ENSCJAG00000019473	KNOWN	protein_coding	POMP	chromosome:C_jacchus3.2.1:5:1:159171411:1	141639771	141659890	D	Proteasome maturation protein {ECO:0000313|EMBL:JAB02513.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036188}  [Source:UniProtKB/TrEMBL;Acc:F7H3K2]
ENSCJAG00000009968	KNOWN_BY_PROJECTION	protein_coding	TMEM200B	chromosome:C_jacchus3.2.1:7:1:155834243:1	63336055	63336990	R	transmembrane protein 200B [Source:HGNC Symbol;Acc:HGNC:33785]
ENSCJAG00000009971	KNOWN	protein_coding	SRSF4	chromosome:C_jacchus3.2.1:7:1:155834243:1	63363932	63400393	R	Serine/arginine-rich splicing factor 4 {ECO:0000313|EMBL:JAB11590.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018355}  [Source:UniProtKB/TrEMBL;Acc:F7DIW3]
ENSCJAG00000019491	KNOWN_BY_PROJECTION	protein_coding	SLC46A3	chromosome:C_jacchus3.2.1:5:1:159171411:1	141673702	141696021	R	solute carrier family 46, member 3 [Source:HGNC Symbol;Acc:HGNC:27501]
ENSCJAG00000020252	KNOWN_BY_PROJECTION	protein_coding	ARHGEF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	34818558	34845422	D	Rho guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:681]
ENSCJAG00000009994	KNOWN_BY_PROJECTION	protein_coding	MECR	chromosome:C_jacchus3.2.1:7:1:155834243:1	63411230	63454834	R	mitochondrial trans-2-enoyl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:19691]
ENSCJAG00000004527	KNOWN_BY_PROJECTION	protein_coding	C1orf111	chromosome:C_jacchus3.2.1:18:1:47448759:1	15898638	15901974	R	chromosome 1 open reading frame 111 [Source:HGNC Symbol;Acc:HGNC:27648]
ENSCJAG00000004517	KNOWN_BY_PROJECTION	protein_coding	C1orf226	chromosome:C_jacchus3.2.1:18:1:47448759:1	15903953	15909599	D	chromosome 1 open reading frame 226 [Source:HGNC Symbol;Acc:HGNC:34351]
ENSCJAG00000006164	KNOWN	protein_coding	BRINP3	chromosome:C_jacchus3.2.1:18:1:47448759:1	16236423	16625793	D	Protein FAM5C {ECO:0000313|EMBL:JAB12350.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011353}  [Source:UniProtKB/TrEMBL;Acc:F7I8S2]
ENSCJAG00000015477	NOVEL	protein_coding	ENSCJAG00000015477	chromosome:C_jacchus3.2.1:10:1:132174527:1	92448329	92449487	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028516}  [Source:UniProtKB/TrEMBL;Acc:F7BPC6]
ENSCJAG00000015396	KNOWN	protein_coding	ATP6V1D	chromosome:C_jacchus3.2.1:10:1:132174527:1	92539038	92559166	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050614}  [Source:UniProtKB/TrEMBL;Acc:F7H3E2]
ENSCJAG00000010031	KNOWN_BY_PROJECTION	protein_coding	PTPRU	chromosome:C_jacchus3.2.1:7:1:155834243:1	63483532	63567624	D	protein tyrosine phosphatase, receptor type, U [Source:HGNC Symbol;Acc:HGNC:9683]
ENSCJAG00000019500	NOVEL	protein_coding	ENSCJAG00000019500	chromosome:C_jacchus3.2.1:5:1:159171411:1	142044333	142345506	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036230}  [Source:UniProtKB/TrEMBL;Acc:F7FPR1]
ENSCJAG00000019514	NOVEL	protein_coding	ENSCJAG00000019514	chromosome:C_jacchus3.2.1:5:1:159171411:1	142371325	142372537	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036233}  [Source:UniProtKB/TrEMBL;Acc:F7FPM1]
ENSCJAG00000032858	KNOWN_BY_PROJECTION	protein_coding	MTUS2	chromosome:C_jacchus3.2.1:5:1:159171411:1	142529282	142555797	D	microtubule associated tumor suppressor candidate 2 [Source:HGNC Symbol;Acc:HGNC:20595]
ENSCJAG00000019515	KNOWN	protein_coding	SLC7A1	chromosome:C_jacchus3.2.1:5:1:159171411:1	142564274	142603570	R	High affinity cationic amino acid transporter 1 {ECO:0000313|EMBL:JAB03506.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036240}  [Source:UniProtKB/TrEMBL;Acc:F7FAM4]
ENSCJAG00000033528	NOVEL	protein_coding	ENSCJAG00000033528	chromosome:C_jacchus3.2.1:18:1:47448759:1	16529531	16530373	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047724}  [Source:UniProtKB/TrEMBL;Acc:F7F7V5]
ENSCJAG00000006160	NOVEL	protein_coding	ENSCJAG00000006160	chromosome:C_jacchus3.2.1:18:1:47448759:1	18532206	18533296	D	Eukaryotic translation initiation factor 3 subunit F {ECO:0000256|HAMAP-Rule:MF_03005}  [Source:UniProtKB/TrEMBL;Acc:F7IDF7]
ENSCJAG00000020277	NOVEL	protein_coding	ENSCJAG00000020277	chromosome:C_jacchus3.2.1:22:1:49145316:1	34846115	34850805	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047693}  [Source:UniProtKB/TrEMBL;Acc:F7GS67]
ENSCJAG00000012607	KNOWN	protein_coding	RABAC1	chromosome:C_jacchus3.2.1:22:1:49145316:1	34892833	34895506	R	Prenylated Rab acceptor protein 1 {ECO:0000313|EMBL:JAB02519.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023095}  [Source:UniProtKB/TrEMBL;Acc:F7I8Z0]
ENSCJAG00000006080	KNOWN	protein_coding	PLA2G4A	chromosome:C_jacchus3.2.1:18:1:47448759:1	19145330	19417353	R	Cytosolic phospholipase A2 {ECO:0000313|EMBL:JAB06129.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011307}  [Source:UniProtKB/TrEMBL;Acc:F7IDG2]
ENSCJAG00000015368	KNOWN	protein_coding	EIF2S1	chromosome:C_jacchus3.2.1:10:1:132174527:1	92559259	92581621	D	Eukaryotic translation initiation factor 2 subunit 1 {ECO:0000313|EMBL:JAB10502.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028344}  [Source:UniProtKB/TrEMBL;Acc:F7ANJ2]
ENSCJAG00000019517	KNOWN	protein_coding	UBL3	chromosome:C_jacchus3.2.1:5:1:159171411:1	142803401	142890147	R	Ubiquitin-like protein 3 {ECO:0000313|EMBL:JAB10924.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036248}  [Source:UniProtKB/TrEMBL;Acc:F7FAF2]
ENSCJAG00000021612	KNOWN	protein_coding	KATNAL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	143262123	143364002	R	Katanin p60 ATPase-containing subunit A-like 1 {ECO:0000313|EMBL:JAB01662.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040225}  [Source:UniProtKB/TrEMBL;Acc:F7INS9]
ENSCJAG00000012623	KNOWN_BY_PROJECTION	protein_coding	ATP1A3	chromosome:C_jacchus3.2.1:22:1:49145316:1	34902535	34933117	R	ATPase, Na+/K+ transporting, alpha 3 polypeptide [Source:HGNC Symbol;Acc:HGNC:801]
ENSCJAG00000006064	KNOWN	protein_coding	PTGS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	19533835	19542095	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011167}  [Source:UniProtKB/TrEMBL;Acc:F7HZJ7]
ENSCJAG00000005964	KNOWN_BY_PROJECTION	protein_coding	MATN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	64913868	64923985	R	matrilin 1, cartilage matrix protein [Source:HGNC Symbol;Acc:HGNC:6907]
ENSCJAG00000021615	KNOWN	protein_coding	HMGB1	chromosome:C_jacchus3.2.1:5:1:159171411:1	143535244	143677452	R	High mobility group protein B1  [Source:UniProtKB/Swiss-Prot;Acc:B0CM99]
ENSCJAG00000005987	KNOWN	protein_coding	LAPTM5	chromosome:C_jacchus3.2.1:7:1:155834243:1	64935234	64962011	R	Lysosomal-associated transmembrane protein 5 {ECO:0000313|EMBL:JAB18701.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046783}  [Source:UniProtKB/TrEMBL;Acc:F7I1A8]
ENSCJAG00000021616	KNOWN_BY_PROJECTION	protein_coding	USPL1	chromosome:C_jacchus3.2.1:5:1:159171411:1	143677770	143724167	D	ubiquitin specific peptidase like 1 [Source:HGNC Symbol;Acc:HGNC:20294]
ENSCJAG00000006011	NOVEL	protein_coding	ENSCJAG00000006011	chromosome:C_jacchus3.2.1:7:1:155834243:1	64996012	64997248	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011047}  [Source:UniProtKB/TrEMBL;Acc:F7IIG3]
ENSCJAG00000021617	KNOWN_BY_PROJECTION	protein_coding	ALOX5AP	chromosome:C_jacchus3.2.1:5:1:159171411:1	143802393	143831148	D	arachidonate 5-lipoxygenase-activating protein [Source:HGNC Symbol;Acc:HGNC:436]
ENSCJAG00000006019	KNOWN_BY_PROJECTION	protein_coding	SDC3	chromosome:C_jacchus3.2.1:7:1:155834243:1	65081085	65086928	R	syndecan 3 [Source:HGNC Symbol;Acc:HGNC:10660]
ENSCJAG00000006043	KNOWN_BY_PROJECTION	protein_coding	PDC	chromosome:C_jacchus3.2.1:18:1:47448759:1	19714505	19734860	D	phosducin [Source:HGNC Symbol;Acc:HGNC:8759]
ENSCJAG00000018674	KNOWN_BY_PROJECTION	protein_coding	MEDAG	chromosome:C_jacchus3.2.1:5:1:159171411:1	143976716	144002488	D	mesenteric estrogen-dependent adipogenesis [Source:HGNC Symbol;Acc:HGNC:25926]
ENSCJAG00000005988	KNOWN_BY_PROJECTION	protein_coding	C1orf27	chromosome:C_jacchus3.2.1:18:1:47448759:1	19752684	19799240	R	chromosome 1 open reading frame 27 [Source:HGNC Symbol;Acc:HGNC:24299]
ENSCJAG00000006035	KNOWN	protein_coding	PUM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	65136907	65280701	R	Pumilio homolog 1 isoform 1 {ECO:0000313|EMBL:JAB35858.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011316}  [Source:UniProtKB/TrEMBL;Acc:F7IDF3]
ENSCJAG00000015361	KNOWN	protein_coding	PLEK2	chromosome:C_jacchus3.2.1:10:1:132174527:1	92583174	92602603	R	Pleckstrin-2 {ECO:0000313|EMBL:JAB10334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028287}  [Source:UniProtKB/TrEMBL;Acc:F6UII2]
ENSCJAG00000015358	KNOWN	protein_coding	TMEM229B	chromosome:C_jacchus3.2.1:10:1:132174527:1	92673667	92687222	R	Transmembrane protein 229B {ECO:0000313|EMBL:JAB16214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028269}  [Source:UniProtKB/TrEMBL;Acc:F6V5M3]
ENSCJAG00000018665	KNOWN_BY_PROJECTION	protein_coding	TEX26	chromosome:C_jacchus3.2.1:5:1:159171411:1	144009566	144048865	D	testis expressed 26 [Source:HGNC Symbol;Acc:HGNC:28622]
ENSCJAG00000015298	KNOWN	protein_coding	PLEKHH1	chromosome:C_jacchus3.2.1:10:1:132174527:1	92735814	92795080	D	Pleckstrin homology domain-containing family H member 1 {ECO:0000313|EMBL:JAB19289.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028258}  [Source:UniProtKB/TrEMBL;Acc:F6VQ86]
ENSCJAG00000018570	KNOWN_BY_PROJECTION	protein_coding	B3GALTL	chromosome:C_jacchus3.2.1:5:1:159171411:1	144132247	144406003	D	beta 1,3-galactosyltransferase-like [Source:HGNC Symbol;Acc:HGNC:20207]
ENSCJAG00000015289	KNOWN_BY_PROJECTION	protein_coding	PIGH	chromosome:C_jacchus3.2.1:10:1:132174527:1	92796808	92807853	R	phosphatidylinositol glycan anchor biosynthesis, class H [Source:HGNC Symbol;Acc:HGNC:8964]
ENSCJAG00000015277	KNOWN	protein_coding	ARG2	chromosome:C_jacchus3.2.1:10:1:132174527:1	92831497	92864900	D	Arginase {ECO:0000256|RuleBase:RU361159}  [Source:UniProtKB/TrEMBL;Acc:F7A825]
ENSCJAG00000006187	KNOWN_BY_PROJECTION	protein_coding	NKAIN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	65381769	65442392	R	Na+/K+ transporting ATPase interacting 1 [Source:HGNC Symbol;Acc:HGNC:25743]
ENSCJAG00000006212	KNOWN	protein_coding	SNRNP40	chromosome:C_jacchus3.2.1:7:1:155834243:1	65461475	65505115	R	U5 small nuclear ribonucleoprotein 40 kDa protein {ECO:0000313|EMBL:JAB02109.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011497}  [Source:UniProtKB/TrEMBL;Acc:F7IKF4]
ENSCJAG00000008068	KNOWN_BY_PROJECTION	protein_coding	AHI1	chromosome:C_jacchus3.2.1:4:1:171630274:1	135791437	136016642	R	Abelson helper integration site 1 [Source:HGNC Symbol;Acc:HGNC:21575]
ENSCJAG00000006257	NOVEL	pseudogene	ENSCJAG00000006257	chromosome:C_jacchus3.2.1:7:1:155834243:1	65477338	65477920	D	<no descrition>
ENSCJAG00000005872	KNOWN	protein_coding	TPR	chromosome:C_jacchus3.2.1:18:1:47448759:1	19800077	19862679	D	Nucleoprotein TPR {ECO:0000313|EMBL:JAB11858.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010994}  [Source:UniProtKB/TrEMBL;Acc:F7I869]
ENSCJAG00000006259	KNOWN	protein_coding	ZCCHC17	chromosome:C_jacchus3.2.1:7:1:155834243:1	65505315	65581083	D	Nucleolar protein of 40 kDa {ECO:0000313|EMBL:JAB03667.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042103}  [Source:UniProtKB/TrEMBL;Acc:F6VTZ4]
ENSCJAG00000012725	KNOWN	protein_coding	GRIK5	chromosome:C_jacchus3.2.1:22:1:49145316:1	34942290	35008497	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023340}  [Source:UniProtKB/TrEMBL;Acc:F7I6G0]
ENSCJAG00000006298	KNOWN_BY_PROJECTION	protein_coding	RNF5	chromosome:C_jacchus3.2.1:7:1:155834243:1	65516032	65516754	R	ring finger protein 5, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:10068]
ENSCJAG00000006300	KNOWN	protein_coding	FABP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	65581406	65589896	R	Fatty acid-binding protein, heart {ECO:0000313|EMBL:JAB04876.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011604}  [Source:UniProtKB/TrEMBL;Acc:F7DNE1]
ENSCJAG00000015263	KNOWN_BY_PROJECTION	protein_coding	VTI1B	chromosome:C_jacchus3.2.1:10:1:132174527:1	92863973	92887491	R	vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:HGNC:17793]
ENSCJAG00000006310	NOVEL	protein_coding	ENSCJAG00000006310	chromosome:C_jacchus3.2.1:7:1:155834243:1	65607928	65608542	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052173}  [Source:UniProtKB/TrEMBL;Acc:F7HY03]
ENSCJAG00000006312	KNOWN_BY_PROJECTION	protein_coding	SERINC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	65646529	65658801	D	serine incorporator 2 [Source:HGNC Symbol;Acc:HGNC:23231]
ENSCJAG00000012746	KNOWN_BY_PROJECTION	protein_coding	ZNF574	chromosome:C_jacchus3.2.1:22:1:49145316:1	35024494	35027659	D	zinc finger protein 574 [Source:HGNC Symbol;Acc:HGNC:26166]
ENSCJAG00000006317	KNOWN	protein_coding	TINAGL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	65779404	65871645	D	Tubulointerstitial nephritis antigen-like isoform 1 {ECO:0000313|EMBL:JAB02415.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011673}  [Source:UniProtKB/TrEMBL;Acc:F7HD12]
ENSCJAG00000012753	KNOWN_BY_PROJECTION	protein_coding	POU2F2	chromosome:C_jacchus3.2.1:22:1:49145316:1	35041249	35084539	R	POU class 2 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9213]
ENSCJAG00000015232	KNOWN	protein_coding	RDH11	chromosome:C_jacchus3.2.1:10:1:132174527:1	92890377	92910045	R	Retinol dehydrogenase 11 isoform 1 {ECO:0000313|EMBL:JAB01933.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028112}  [Source:UniProtKB/TrEMBL;Acc:F7BRU6]
ENSCJAG00000018597	KNOWN	protein_coding	HSPH1	chromosome:C_jacchus3.2.1:5:1:159171411:1	144235207	144261033	R	Heat shock protein 105 kDa {ECO:0000313|EMBL:JAB11548.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034630}  [Source:UniProtKB/TrEMBL;Acc:F7HN07]
ENSCJAG00000015207	KNOWN	protein_coding	RDH12	chromosome:C_jacchus3.2.1:10:1:132174527:1	92945517	92960079	D	Retinol dehydrogenase 12 {ECO:0000313|EMBL:JAB13470.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028065}  [Source:UniProtKB/TrEMBL;Acc:F6V759]
ENSCJAG00000006371	KNOWN_BY_PROJECTION	protein_coding	COL16A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	65788380	65995220	R	collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
ENSCJAG00000015147	KNOWN_BY_PROJECTION	protein_coding	ZFYVE26	chromosome:C_jacchus3.2.1:10:1:132174527:1	92976084	93042115	R	zinc finger, FYVE domain containing 26 [Source:HGNC Symbol;Acc:HGNC:20761]
ENSCJAG00000018567	NOVEL	protein_coding	ENSCJAG00000018567	chromosome:C_jacchus3.2.1:5:1:159171411:1	144747565	144748639	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033951}  [Source:UniProtKB/TrEMBL;Acc:F6T2F0]
ENSCJAG00000012770	KNOWN	protein_coding	DEDD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	35155128	35177331	R	DNA-binding death effector domain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB05279.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023419}  [Source:UniProtKB/TrEMBL;Acc:F7ISM1]
ENSCJAG00000006342	KNOWN_BY_PROJECTION	protein_coding	HCRTR1	chromosome:C_jacchus3.2.1:7:1:155834243:1	65820815	65828775	D	hypocretin (orexin) receptor 1 [Source:HGNC Symbol;Acc:HGNC:4848]
ENSCJAG00000018522	KNOWN_BY_PROJECTION	protein_coding	RXFP2	chromosome:C_jacchus3.2.1:5:1:159171411:1	144815300	144881540	D	relaxin/insulin-like family peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:17318]
ENSCJAG00000006355	KNOWN	protein_coding	PEF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	65831549	65847013	R	Peflin {ECO:0000313|EMBL:JAB26676.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011736}  [Source:UniProtKB/TrEMBL;Acc:F7GCS5]
ENSCJAG00000008164	KNOWN_BY_PROJECTION	protein_coding	PDE7B	chromosome:C_jacchus3.2.1:4:1:171630274:1	136432200	136765178	D	phosphodiesterase 7B [Source:HGNC Symbol;Acc:HGNC:8792]
ENSCJAG00000012788	KNOWN	protein_coding	ZNF526	chromosome:C_jacchus3.2.1:22:1:49145316:1	35179271	35185623	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023433}; Zinc finger protein 526 {ECO:0000313|EMBL:JAB04147.1}  [Source:UniProtKB/TrEMBL;Acc:F7ISH4]
ENSCJAG00000005826	KNOWN_BY_PROJECTION	protein_coding	PRG4	chromosome:C_jacchus3.2.1:18:1:47448759:1	19860387	19886012	R	proteoglycan 4 [Source:HGNC Symbol;Acc:HGNC:9364]
ENSCJAG00000012791	KNOWN	protein_coding	GSK3A	chromosome:C_jacchus3.2.1:22:1:49145316:1	35189427	35202604	R	Glycogen synthase kinase-3 alpha {ECO:0000313|EMBL:JAB07498.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023481}  [Source:UniProtKB/TrEMBL;Acc:F7II56]
ENSCJAG00000008189	KNOWN_BY_PROJECTION	protein_coding	MTFR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	136805200	136830523	R	mitochondrial fission regulator 2 [Source:HGNC Symbol;Acc:HGNC:21115]
ENSCJAG00000006434	KNOWN_BY_PROJECTION	protein_coding	BAI2	chromosome:C_jacchus3.2.1:7:1:155834243:1	65932416	65963087	R	brain-specific angiogenesis inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:944]
ENSCJAG00000015123	KNOWN_BY_PROJECTION	protein_coding	RAD51B	chromosome:C_jacchus3.2.1:10:1:132174527:1	93044802	93100110	D	RAD51 paralog B [Source:HGNC Symbol;Acc:HGNC:9822]
ENSCJAG00000005660	KNOWN_BY_PROJECTION	protein_coding	HMCN1	chromosome:C_jacchus3.2.1:18:1:47448759:1	19981655	20287605	R	hemicentin 1 [Source:HGNC Symbol;Acc:HGNC:19194]
ENSCJAG00000008200	KNOWN	protein_coding	BCLAF1	chromosome:C_jacchus3.2.1:4:1:171630274:1	136839804	136873773	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015299}  [Source:UniProtKB/TrEMBL;Acc:F7FF00]
ENSCJAG00000012822	KNOWN	protein_coding	ERF	chromosome:C_jacchus3.2.1:22:1:49145316:1	35207489	35216618	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023515}  [Source:UniProtKB/TrEMBL;Acc:F7IB15]
ENSCJAG00000006536	KNOWN_BY_PROJECTION	protein_coding	SPOCD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	65999259	66004088	R	SPOC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26338]
ENSCJAG00000006539	KNOWN	protein_coding	PTP4A2	chromosome:C_jacchus3.2.1:7:1:155834243:1	66112172	66149523	R	Protein tyrosine phosphatase type IVA 2 isoform 4 {ECO:0000313|EMBL:JAB11682.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012109}  [Source:UniProtKB/TrEMBL;Acc:F7EJH8]
ENSCJAG00000012847	KNOWN	protein_coding	CIC	chromosome:C_jacchus3.2.1:22:1:49145316:1	35253619	35264665	D	Protein capicua homolog {ECO:0000313|EMBL:JAB07210.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023625}  [Source:UniProtKB/TrEMBL;Acc:F7HII4]
ENSCJAG00000006575	NOVEL	pseudogene	ENSCJAG00000006575	chromosome:C_jacchus3.2.1:7:1:155834243:1	66191987	66192550	D	<no descrition>
ENSCJAG00000006580	KNOWN	protein_coding	KHDRBS1	chromosome:C_jacchus3.2.1:7:1:155834243:1	66239341	66284850	D	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform 2 {ECO:0000313|EMBL:JAB52051.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012210}  [Source:UniProtKB/TrEMBL;Acc:F7GTD2]
ENSCJAG00000015145	NOVEL	pseudogene	ENSCJAG00000015145	chromosome:C_jacchus3.2.1:10:1:132174527:1	93185835	93186531	D	<no descrition>
ENSCJAG00000015139	NOVEL	protein_coding	ENSCJAG00000015139	chromosome:C_jacchus3.2.1:10:1:132174527:1	93542160	93542950	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027907}  [Source:UniProtKB/TrEMBL;Acc:F7E7I2]
ENSCJAG00000018482	KNOWN_BY_PROJECTION	protein_coding	FRY	chromosome:C_jacchus3.2.1:5:1:159171411:1	145233081	145411446	D	furry homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:20367]
ENSCJAG00000015135	NOVEL	pseudogene	ENSCJAG00000015135	chromosome:C_jacchus3.2.1:10:1:132174527:1	93741771	93742192	R	<no descrition>
ENSCJAG00000015116	KNOWN_BY_PROJECTION	protein_coding	ZFP36L1	chromosome:C_jacchus3.2.1:10:1:132174527:1	94001622	94007662	R	ZFP36 ring finger protein-like 1 [Source:HGNC Symbol;Acc:HGNC:1107]
ENSCJAG00000015109	NOVEL	protein_coding	ENSCJAG00000015109	chromosome:C_jacchus3.2.1:10:1:132174527:1	94007684	94009642	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027856}  [Source:UniProtKB/TrEMBL;Acc:F7G442]
ENSCJAG00000012900	KNOWN_BY_PROJECTION	protein_coding	PAFAH1B3	chromosome:C_jacchus3.2.1:22:1:49145316:1	35265878	35271873	R	platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) [Source:HGNC Symbol;Acc:HGNC:8576]
ENSCJAG00000018479	KNOWN_BY_PROJECTION	protein_coding	ZAR1L	chromosome:C_jacchus3.2.1:5:1:159171411:1	145418694	145426318	R	zygote arrest 1-like [Source:HGNC Symbol;Acc:HGNC:37116]
ENSCJAG00000006630	KNOWN_BY_PROJECTION	protein_coding	TMEM39B	chromosome:C_jacchus3.2.1:7:1:155834243:1	66295989	66324563	D	transmembrane protein 39B [Source:HGNC Symbol;Acc:HGNC:25510]
ENSCJAG00000018462	NOVEL	protein_coding	BRCA2	chromosome:C_jacchus3.2.1:5:1:159171411:1	145430371	145527428	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034250}  [Source:UniProtKB/TrEMBL;Acc:F7BTV7]
ENSCJAG00000005657	NOVEL	pseudogene	ENSCJAG00000005657	chromosome:C_jacchus3.2.1:18:1:47448759:1	20570676	20571012	D	<no descrition>
ENSCJAG00000006669	KNOWN	protein_coding	KPNA6	chromosome:C_jacchus3.2.1:7:1:155834243:1	66330700	66390641	D	Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673}  [Source:UniProtKB/TrEMBL;Acc:F7FPC0]
ENSCJAG00000005584	KNOWN	protein_coding	IVNS1ABP	chromosome:C_jacchus3.2.1:18:1:47448759:1	20823590	20844771	D	Influenza virus NS1A-binding protein {ECO:0000313|EMBL:JAB08649.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010338}  [Source:UniProtKB/TrEMBL;Acc:F7A9N2]
ENSCJAG00000006728	KNOWN	protein_coding	TXLNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	66399958	66419554	D	Alpha-taxilin {ECO:0000313|EMBL:JAB06627.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012466}  [Source:UniProtKB/TrEMBL;Acc:F7EWF4]
ENSCJAG00000006747	KNOWN_BY_PROJECTION	protein_coding	CCDC28B	chromosome:C_jacchus3.2.1:7:1:155834243:1	66423892	66427419	D	coiled-coil domain containing 28B [Source:HGNC Symbol;Acc:HGNC:28163]
ENSCJAG00000006762	KNOWN_BY_PROJECTION	protein_coding	IQCC	chromosome:C_jacchus3.2.1:7:1:155834243:1	66427866	66452724	D	IQ motif containing C [Source:HGNC Symbol;Acc:HGNC:25545]
ENSCJAG00000006772	KNOWN_BY_PROJECTION	protein_coding	DCDC2B	chromosome:C_jacchus3.2.1:7:1:155834243:1	66431251	66439243	D	doublecortin domain containing 2B [Source:HGNC Symbol;Acc:HGNC:32576]
ENSCJAG00000006793	KNOWN_BY_PROJECTION	protein_coding	TMEM234	chromosome:C_jacchus3.2.1:7:1:155834243:1	66439481	66446384	R	transmembrane protein 234 [Source:HGNC Symbol;Acc:HGNC:28837]
ENSCJAG00000006810	KNOWN	protein_coding	EIF3I	chromosome:C_jacchus3.2.1:7:1:155834243:1	66445607	66461971	D	Eukaryotic translation initiation factor 3 subunit I {ECO:0000256|HAMAP-Rule:MF_03008}  [Source:UniProtKB/TrEMBL;Acc:F6QB54]
ENSCJAG00000018453	KNOWN_BY_PROJECTION	protein_coding	N4BP2L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	145529198	145561767	R	NEDD4 binding protein 2-like 1 [Source:HGNC Symbol;Acc:HGNC:25037]
ENSCJAG00000018461	NOVEL	protein_coding	ENSCJAG00000018461	chromosome:C_jacchus3.2.1:5:1:159171411:1	145534682	145561595	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034213}  [Source:UniProtKB/TrEMBL;Acc:F7CPW7]
ENSCJAG00000006826	NOVEL	protein_coding	ENSCJAG00000006826	chromosome:C_jacchus3.2.1:7:1:155834243:1	66469817	66471204	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012634}  [Source:UniProtKB/TrEMBL;Acc:F6QAH9]
ENSCJAG00000015020	KNOWN_BY_PROJECTION	protein_coding	ACTN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	94097496	94211151	R	actinin, alpha 1 [Source:HGNC Symbol;Acc:HGNC:163]
ENSCJAG00000006830	KNOWN	protein_coding	FAM167B	chromosome:C_jacchus3.2.1:7:1:155834243:1	66478576	66480256	D	Protein FAM167B {ECO:0000313|EMBL:JAB02190.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012637}  [Source:UniProtKB/TrEMBL;Acc:F6QAE5]
ENSCJAG00000000957	KNOWN_BY_PROJECTION	protein_coding	LCK	chromosome:C_jacchus3.2.1:7:1:155834243:1	66505504	66516177	D	LCK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:6524]
ENSCJAG00000018437	KNOWN_BY_PROJECTION	protein_coding	N4BP2L2	chromosome:C_jacchus3.2.1:5:1:159171411:1	145568621	145676636	R	NEDD4 binding protein 2-like 2 [Source:HGNC Symbol;Acc:HGNC:26916]
ENSCJAG00000000970	KNOWN	protein_coding	HDAC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	66524365	66569848	D	Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}  [Source:UniProtKB/TrEMBL;Acc:F7GTK7]
ENSCJAG00000000977	KNOWN_BY_PROJECTION	protein_coding	TSSK3	chromosome:C_jacchus3.2.1:7:1:155834243:1	66597874	66600297	D	testis-specific serine kinase 3 [Source:HGNC Symbol;Acc:HGNC:15473]
ENSCJAG00000018428	KNOWN_BY_PROJECTION	protein_coding	PDS5B	chromosome:C_jacchus3.2.1:5:1:159171411:1	145799408	145938449	D	PDS5 cohesin associated factor B [Source:HGNC Symbol;Acc:HGNC:20418]
ENSCJAG00000000980	KNOWN_BY_PROJECTION	protein_coding	BSDC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	66601073	66632895	R	BSD domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25501]
ENSCJAG00000005544	KNOWN_BY_PROJECTION	protein_coding	SWT1	chromosome:C_jacchus3.2.1:18:1:47448759:1	20849613	20937427	R	SWT1 RNA endoribonuclease homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:16785]
ENSCJAG00000012914	KNOWN_BY_PROJECTION	protein_coding	PRR19	chromosome:C_jacchus3.2.1:22:1:49145316:1	35271230	35279510	D	proline rich 19 [Source:HGNC Symbol;Acc:HGNC:33728]
ENSCJAG00000012919	KNOWN_BY_PROJECTION	protein_coding	TMEM145	chromosome:C_jacchus3.2.1:22:1:49145316:1	35281633	35293677	D	transmembrane protein 145 [Source:HGNC Symbol;Acc:HGNC:26912]
ENSCJAG00000005456	KNOWN_BY_PROJECTION	protein_coding	TRMT1L	chromosome:C_jacchus3.2.1:18:1:47448759:1	20937528	20978268	D	tRNA methyltransferase 1 homolog (S. cerevisiae)-like [Source:HGNC Symbol;Acc:HGNC:16782]
ENSCJAG00000012930	KNOWN_BY_PROJECTION	protein_coding	MEGF8	chromosome:C_jacchus3.2.1:22:1:49145316:1	35295103	35350520	D	multiple EGF-like-domains 8 [Source:HGNC Symbol;Acc:HGNC:3233]
ENSCJAG00000000996	NOVEL	pseudogene	ENSCJAG00000000996	chromosome:C_jacchus3.2.1:7:1:155834243:1	66643251	66643921	R	<no descrition>
ENSCJAG00000001003	KNOWN_BY_PROJECTION	protein_coding	ZBTB8A	chromosome:C_jacchus3.2.1:7:1:155834243:1	66771512	66833935	D	zinc finger and BTB domain containing 8A [Source:HGNC Symbol;Acc:HGNC:24172]
ENSCJAG00000001017	KNOWN_BY_PROJECTION	protein_coding	ZBTB8OS	chromosome:C_jacchus3.2.1:7:1:155834243:1	66833330	66883594	R	zinc finger and BTB domain containing 8 opposite strand [Source:HGNC Symbol;Acc:HGNC:24094]
ENSCJAG00000001018	NOVEL	protein_coding	ENSCJAG00000001018	chromosome:C_jacchus3.2.1:7:1:155834243:1	66843562	66843939	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001730}  [Source:UniProtKB/TrEMBL;Acc:F6XSN8]
ENSCJAG00000012952	KNOWN	protein_coding	CNFN	chromosome:C_jacchus3.2.1:22:1:49145316:1	35357015	35359809	R	Cornifelin {ECO:0000313|EMBL:JAB01730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023750}  [Source:UniProtKB/TrEMBL;Acc:F7FLV5]
ENSCJAG00000001021	KNOWN	protein_coding	RBBP4	chromosome:C_jacchus3.2.1:7:1:155834243:1	66884251	66910607	D	Histone-binding protein RBBP4 isoform a {ECO:0000313|EMBL:JAB04829.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001748}  [Source:UniProtKB/TrEMBL;Acc:F6XRN1]
ENSCJAG00000018435	NOVEL	protein_coding	ENSCJAG00000018435	chromosome:C_jacchus3.2.1:5:1:159171411:1	145803468	145804505	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034163}  [Source:UniProtKB/TrEMBL;Acc:F6WE94]
ENSCJAG00000018432	NOVEL	pseudogene	ENSCJAG00000018432	chromosome:C_jacchus3.2.1:5:1:159171411:1	145917265	145919139	D	<no descrition>
ENSCJAG00000012963	KNOWN_BY_PROJECTION	protein_coding	LIPE	chromosome:C_jacchus3.2.1:22:1:49145316:1	35373057	35402401	R	lipase, hormone-sensitive [Source:HGNC Symbol;Acc:HGNC:6621]
ENSCJAG00000018421	KNOWN_BY_PROJECTION	protein_coding	KL	chromosome:C_jacchus3.2.1:5:1:159171411:1	146219975	146274776	D	klotho [Source:HGNC Symbol;Acc:HGNC:6344]
ENSCJAG00000001030	KNOWN_BY_PROJECTION	protein_coding	SYNC	chromosome:C_jacchus3.2.1:7:1:155834243:1	66911636	66933506	R	syncoilin, intermediate filament protein [Source:HGNC Symbol;Acc:HGNC:28897]
ENSCJAG00000001035	KNOWN_BY_PROJECTION	protein_coding	KIAA1522	chromosome:C_jacchus3.2.1:7:1:155834243:1	66976187	67009000	D	KIAA1522 [Source:HGNC Symbol;Acc:HGNC:29301]
ENSCJAG00000012979	NOVEL	pseudogene	ENSCJAG00000012979	chromosome:C_jacchus3.2.1:22:1:49145316:1	35399793	35399910	D	<no descrition>
ENSCJAG00000012985	KNOWN_BY_PROJECTION	protein_coding	CXCL17	chromosome:C_jacchus3.2.1:22:1:49145316:1	35406719	35424115	R	chemokine (C-X-C motif) ligand 17 [Source:HGNC Symbol;Acc:HGNC:19232]
ENSCJAG00000001037	KNOWN	protein_coding	YARS	chromosome:C_jacchus3.2.1:7:1:155834243:1	67009337	67051389	R	Tyrosine--tRNA ligase, cytoplasmic {ECO:0000313|EMBL:JAB01802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001819}  [Source:UniProtKB/TrEMBL;Acc:F7CB85]
ENSCJAG00000012987	KNOWN_BY_PROJECTION	protein_coding	CEACAM8	chromosome:C_jacchus3.2.1:22:1:49145316:1	35492535	35578118	R	carcinoembryonic antigen-related cell adhesion molecule 8 [Source:HGNC Symbol;Acc:HGNC:1820]
ENSCJAG00000018399	KNOWN	protein_coding	STARD13	chromosome:C_jacchus3.2.1:5:1:159171411:1	146311946	146501707	R	StAR-related lipid transfer protein 13 isoform 1 {ECO:0000313|EMBL:JAB09567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034126}  [Source:UniProtKB/TrEMBL;Acc:F6XNV9]
ENSCJAG00000001064	KNOWN	protein_coding	S100PBP	chromosome:C_jacchus3.2.1:7:1:155834243:1	67050877	67089754	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001823}  [Source:UniProtKB/TrEMBL;Acc:F7CB63]
ENSCJAG00000001067	KNOWN	protein_coding	FNDC5	chromosome:C_jacchus3.2.1:7:1:155834243:1	67098525	67106215	R	Fibronectin type III domain-containing protein 5 isoform 1 {ECO:0000313|EMBL:JAB15817.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001833}  [Source:UniProtKB/TrEMBL;Acc:F7BWY9]
ENSCJAG00000017073	NOVEL	protein_coding	ENSCJAG00000017073	chromosome:C_jacchus3.2.1:22:1:49145316:1	35609514	35613382	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031376}  [Source:UniProtKB/TrEMBL;Acc:F7IRU1]
ENSCJAG00000001075	KNOWN_BY_PROJECTION	protein_coding	HPCA	chromosome:C_jacchus3.2.1:7:1:155834243:1	67121302	67129603	D	hippocalcin [Source:HGNC Symbol;Acc:HGNC:5144]
ENSCJAG00000002473	NOVEL	pseudogene	ENSCJAG00000002473	chromosome:C_jacchus3.2.1:22:1:49145316:1	35661420	35661874	R	<no descrition>
ENSCJAG00000013647	KNOWN_BY_PROJECTION	protein_coding	CD177	chromosome:C_jacchus3.2.1:22:1:49145316:1	35673788	35685924	R	CD177 molecule [Source:HGNC Symbol;Acc:HGNC:30072]
ENSCJAG00000001079	KNOWN	protein_coding	TMEM54	chromosome:C_jacchus3.2.1:7:1:155834243:1	67129551	67136348	R	Transmembrane protein 54 {ECO:0000313|EMBL:JAB04861.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001857}  [Source:UniProtKB/TrEMBL;Acc:F7BVY9]
ENSCJAG00000005442	KNOWN	protein_coding	RNF2	chromosome:C_jacchus3.2.1:18:1:47448759:1	20986403	21038121	R	E3 ubiquitin-protein ligase RING2 {ECO:0000313|EMBL:JAB04307.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009950}  [Source:UniProtKB/TrEMBL;Acc:F7HCB5]
ENSCJAG00000001085	KNOWN_BY_PROJECTION	protein_coding	RNF19B	chromosome:C_jacchus3.2.1:7:1:155834243:1	67173701	67202672	R	ring finger protein 19B [Source:HGNC Symbol;Acc:HGNC:26886]
ENSCJAG00000001103	NOVEL	protein_coding	ENSCJAG00000001103	chromosome:C_jacchus3.2.1:7:1:155834243:1	67219329	67219856	D	60S ribosomal protein L18a {ECO:0000256|PIRNR:PIRNR002190}  [Source:UniProtKB/TrEMBL;Acc:F7ADD8]
ENSCJAG00000005422	KNOWN_BY_PROJECTION	protein_coding	FAM129A	chromosome:C_jacchus3.2.1:18:1:47448759:1	21097993	21254413	D	family with sequence similarity 129, member A [Source:HGNC Symbol;Acc:HGNC:16784]
ENSCJAG00000001105	KNOWN	protein_coding	ENSCJAG00000001105	chromosome:C_jacchus3.2.1:7:1:155834243:1	67253598	67282214	R	Adenylate kinase 2, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03168}  [Source:UniProtKB/TrEMBL;Acc:F6XQ43]
ENSCJAG00000034655	NOVEL	protein_coding	ENSCJAG00000034655	chromosome:C_jacchus3.2.1:5:1:159171411:1	146727380	146727886	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048759}  [Source:UniProtKB/TrEMBL;Acc:F6QJA3]
ENSCJAG00000018380	KNOWN_BY_PROJECTION	protein_coding	RFC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	147030172	147172361	D	replication factor C (activator 1) 3, 38kDa [Source:HGNC Symbol;Acc:HGNC:9971]
ENSCJAG00000034957	KNOWN_BY_PROJECTION	protein_coding	AZIN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	67323602	67359857	D	antizyme inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:29957]
ENSCJAG00000005374	KNOWN_BY_PROJECTION	protein_coding	EDEM3	chromosome:C_jacchus3.2.1:18:1:47448759:1	21291920	21358011	D	ER degradation enhancer, mannosidase alpha-like 3 [Source:HGNC Symbol;Acc:HGNC:16787]
ENSCJAG00000001133	KNOWN	protein_coding	ZNF362	chromosome:C_jacchus3.2.1:7:1:155834243:1	67379290	67535254	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001969}  [Source:UniProtKB/TrEMBL;Acc:F6X235]
ENSCJAG00000001177	KNOWN_BY_PROJECTION	protein_coding	TRIM62	chromosome:C_jacchus3.2.1:7:1:155834243:1	67387988	67422482	R	tripartite motif containing 62 [Source:HGNC Symbol;Acc:HGNC:25574]
ENSCJAG00000035924	NOVEL	pseudogene	ENSCJAG00000035924	chromosome:C_jacchus3.2.1:7:1:155834243:1	67533908	67535254	D	<no descrition>
ENSCJAG00000001190	KNOWN_BY_PROJECTION	protein_coding	A3GALT2	chromosome:C_jacchus3.2.1:7:1:155834243:1	67541636	67545814	R	alpha 1,3-galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:30005]
ENSCJAG00000018377	NOVEL	pseudogene	ENSCJAG00000018377	chromosome:C_jacchus3.2.1:5:1:159171411:1	147881699	147882101	D	<no descrition>
ENSCJAG00000001193	KNOWN	protein_coding	PHC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	67559869	67672304	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002175}  [Source:UniProtKB/TrEMBL;Acc:F7IE86]
ENSCJAG00000001247	KNOWN_BY_PROJECTION	protein_coding	ZSCAN20	chromosome:C_jacchus3.2.1:7:1:155834243:1	67717559	67740278	D	zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
ENSCJAG00000008294	KNOWN_BY_PROJECTION	protein_coding	MAP7	chromosome:C_jacchus3.2.1:4:1:171630274:1	136920703	137131925	R	microtubule-associated protein 7 [Source:HGNC Symbol;Acc:HGNC:6869]
ENSCJAG00000001262	KNOWN_BY_PROJECTION	protein_coding	CSMD2	chromosome:C_jacchus3.2.1:7:1:155834243:1	67771414	68426326	R	CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
ENSCJAG00000018225	KNOWN_BY_PROJECTION	protein_coding	NBEA	chromosome:C_jacchus3.2.1:5:1:159171411:1	148133949	148862367	D	neurobeachin [Source:HGNC Symbol;Acc:HGNC:7648]
ENSCJAG00000001365	NOVEL	pseudogene	ENSCJAG00000001365	chromosome:C_jacchus3.2.1:7:1:155834243:1	67782035	67783421	R	<no descrition>
ENSCJAG00000001367	NOVEL	pseudogene	ENSCJAG00000001367	chromosome:C_jacchus3.2.1:7:1:155834243:1	68273804	68274460	R	<no descrition>
ENSCJAG00000001370	KNOWN_BY_PROJECTION	protein_coding	C1orf94	chromosome:C_jacchus3.2.1:7:1:155834243:1	68427375	68482726	D	chromosome 1 open reading frame 94 [Source:HGNC Symbol;Acc:HGNC:28250]
ENSCJAG00000001379	KNOWN	protein_coding	GJB5	chromosome:C_jacchus3.2.1:7:1:155834243:1	69052788	69056171	D	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F7I2A7]
ENSCJAG00000001380	KNOWN	protein_coding	GJB3	chromosome:C_jacchus3.2.1:7:1:155834243:1	69079939	69084625	D	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F6VAQ2]
ENSCJAG00000001383	KNOWN	protein_coding	GJA4	chromosome:C_jacchus3.2.1:7:1:155834243:1	69091916	69094614	D	Gap junction protein {ECO:0000256|RuleBase:RU000630}  [Source:UniProtKB/TrEMBL;Acc:F7ARL8]
ENSCJAG00000023375	NOVEL	protein_coding	ENSCJAG00000023375	chromosome:C_jacchus3.2.1:7:1:155834243:1	69162607	69166971	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041871}  [Source:UniProtKB/TrEMBL;Acc:F7CTV9]
ENSCJAG00000001385	KNOWN_BY_PROJECTION	protein_coding	DLGAP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	69173580	69211941	R	discs, large (Drosophila) homolog-associated protein 3 [Source:HGNC Symbol;Acc:HGNC:30368]
ENSCJAG00000013643	KNOWN_BY_PROJECTION	protein_coding	TEX101	chromosome:C_jacchus3.2.1:22:1:49145316:1	35708151	35711299	D	testis expressed 101 [Source:HGNC Symbol;Acc:HGNC:30722]
ENSCJAG00000013640	KNOWN_BY_PROJECTION	protein_coding	LYPD3	chromosome:C_jacchus3.2.1:22:1:49145316:1	35755080	35757452	R	LY6/PLAUR domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24880]
ENSCJAG00000013624	KNOWN_BY_PROJECTION	protein_coding	PHLDB3	chromosome:C_jacchus3.2.1:22:1:49145316:1	35768023	35795436	R	pleckstrin homology-like domain, family B, member 3 [Source:HGNC Symbol;Acc:HGNC:30499]
ENSCJAG00000001402	NOVEL	pseudogene	ENSCJAG00000001402	chromosome:C_jacchus3.2.1:7:1:155834243:1	69255467	69255901	R	<no descrition>
ENSCJAG00000013606	KNOWN	protein_coding	ETHE1	chromosome:C_jacchus3.2.1:22:1:49145316:1	35797601	35819357	R	Protein ETHE1, mitochondrial {ECO:0000313|EMBL:JAB17422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025044}  [Source:UniProtKB/TrEMBL;Acc:F6ZJQ8]
ENSCJAG00000001408	KNOWN	protein_coding	ZMYM6	chromosome:C_jacchus3.2.1:7:1:155834243:1	69287750	69334018	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002505}; Zinc finger MYM-type protein 6 {ECO:0000313|EMBL:JAB08595.1}  [Source:UniProtKB/TrEMBL;Acc:F7INF9]
ENSCJAG00000013599	KNOWN_BY_PROJECTION	protein_coding	ZNF575	chromosome:C_jacchus3.2.1:22:1:49145316:1	35818534	35827390	D	zinc finger protein 575 [Source:HGNC Symbol;Acc:HGNC:27606]
ENSCJAG00000033243	NOVEL	protein_coding	ENSCJAG00000033243	chromosome:C_jacchus3.2.1:18:1:47448759:1	21325186	21325661	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051158}  [Source:UniProtKB/TrEMBL;Acc:F6Z3M7]
ENSCJAG00000035811	NOVEL	pseudogene	ENSCJAG00000035811	chromosome:C_jacchus3.2.1:18:1:47448759:1	21354398	21355655	D	<no descrition>
ENSCJAG00000013552	KNOWN_BY_PROJECTION	protein_coding	XRCC1	chromosome:C_jacchus3.2.1:22:1:49145316:1	35834814	35873510	R	X-ray repair complementing defective repair in Chinese hamster cells 1 [Source:HGNC Symbol;Acc:HGNC:12828]
ENSCJAG00000001420	KNOWN_BY_PROJECTION	protein_coding	ZMYM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	69403687	69438463	D	zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
ENSCJAG00000013544	KNOWN_BY_PROJECTION	protein_coding	PINLYP	chromosome:C_jacchus3.2.1:22:1:49145316:1	35875500	35881643	D	phospholipase A2 inhibitor and LY6/PLAUR domain containing [Source:HGNC Symbol;Acc:HGNC:44206]
ENSCJAG00000013535	KNOWN	protein_coding	IRGQ	chromosome:C_jacchus3.2.1:22:1:49145316:1	35892778	35896768	R	Immunity-related GTPase family Q protein {ECO:0000313|EMBL:JAB03710.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024892}  [Source:UniProtKB/TrEMBL;Acc:F6SYE9]
ENSCJAG00000001430	KNOWN_BY_PROJECTION	protein_coding	HNRNPA1L2	chromosome:C_jacchus3.2.1:7:1:155834243:1	69478602	69479525	R	heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:HGNC:27067]
ENSCJAG00000005369	KNOWN	protein_coding	C1ORF21	chromosome:C_jacchus3.2.1:18:1:47448759:1	21420193	21572954	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009810}; Uncharacterized protein C1orf21 {ECO:0000313|EMBL:JAB04590.1}  [Source:UniProtKB/TrEMBL;Acc:F7FJY2]
ENSCJAG00000001431	NOVEL	protein_coding	ENSCJAG00000001431	chromosome:C_jacchus3.2.1:7:1:155834243:1	69500268	69507919	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002551}  [Source:UniProtKB/TrEMBL;Acc:F7IL15]
ENSCJAG00000013521	KNOWN_BY_PROJECTION	protein_coding	SRRM5	chromosome:C_jacchus3.2.1:22:1:49145316:1	35897826	35916799	D	serine/arginine repetitive matrix 5 [Source:HGNC Symbol;Acc:HGNC:37248]
ENSCJAG00000005362	NOVEL	pseudogene	ENSCJAG00000005362	chromosome:C_jacchus3.2.1:18:1:47448759:1	21934979	21935288	R	<no descrition>
ENSCJAG00000023377	NOVEL	protein_coding	ENSCJAG00000023377	chromosome:C_jacchus3.2.1:7:1:155834243:1	69571790	69572983	R	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7CTU4]
ENSCJAG00000001444	NOVEL	pseudogene	ENSCJAG00000001444	chromosome:C_jacchus3.2.1:7:1:155834243:1	69573791	69574777	D	<no descrition>
ENSCJAG00000037736	KNOWN_BY_PROJECTION	protein_coding	ZNF576	chromosome:C_jacchus3.2.1:22:1:49145316:1	35898301	35900966	D	zinc finger protein 576 [Source:HGNC Symbol;Acc:HGNC:28357]
ENSCJAG00000005356	KNOWN	protein_coding	TSEN15	chromosome:C_jacchus3.2.1:18:1:47448759:1	21974674	21997748	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009793}; tRNA-splicing endonuclease subunit Sen15 isoform 1 {ECO:0000313|EMBL:JAB03179.1}  [Source:UniProtKB/TrEMBL;Acc:F7GWP4]
ENSCJAG00000013510	KNOWN	protein_coding	ZNF428	chromosome:C_jacchus3.2.1:22:1:49145316:1	35909060	35922677	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024853}; Zinc finger protein 428 {ECO:0000313|EMBL:JAB04475.1}  [Source:UniProtKB/TrEMBL;Acc:F6TKR0]
ENSCJAG00000013492	KNOWN_BY_PROJECTION	protein_coding	CADM4	chromosome:C_jacchus3.2.1:22:1:49145316:1	35925040	35930590	R	cell adhesion molecule 4 [Source:HGNC Symbol;Acc:HGNC:30825]
ENSCJAG00000001447	KNOWN_BY_PROJECTION	protein_coding	ZMYM4	chromosome:C_jacchus3.2.1:7:1:155834243:1	69588353	69745514	D	zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
ENSCJAG00000005331	KNOWN_BY_PROJECTION	protein_coding	COLGALT2	chromosome:C_jacchus3.2.1:18:1:47448759:1	22012001	22104225	D	collagen beta(1-O)galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16790]
ENSCJAG00000013472	KNOWN	protein_coding	PLAUR	chromosome:C_jacchus3.2.1:22:1:49145316:1	35950628	35974936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024772}; Urokinase plasminogen activator surface receptor isoform 1 {ECO:0000313|EMBL:JAB02167.1}  [Source:UniProtKB/TrEMBL;Acc:F6QW88]
ENSCJAG00000008382	NOVEL	protein_coding	ENSCJAG00000008382	chromosome:C_jacchus3.2.1:4:1:171630274:1	137021971	137022576	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015422}  [Source:UniProtKB/TrEMBL;Acc:F7GZP8]
ENSCJAG00000008383	KNOWN_BY_PROJECTION	protein_coding	MAP3K5	chromosome:C_jacchus3.2.1:4:1:171630274:1	137138339	137383477	R	mitogen-activated protein kinase kinase kinase 5 [Source:HGNC Symbol;Acc:HGNC:6857]
ENSCJAG00000001486	KNOWN	protein_coding	KIAA0319L	chromosome:C_jacchus3.2.1:7:1:155834243:1	69763271	69900819	R	Dyslexia-associated protein KIAA0319-like protein {ECO:0000313|EMBL:JAB06874.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002708}  [Source:UniProtKB/TrEMBL;Acc:F7ISY0]
ENSCJAG00000005265	KNOWN	protein_coding	RGL1	chromosome:C_jacchus3.2.1:18:1:47448759:1	22111635	22422872	R	Ral guanine nucleotide dissociation stimulator-like 1 {ECO:0000313|EMBL:JAB18902.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046395}  [Source:UniProtKB/TrEMBL;Acc:F7HZ62]
ENSCJAG00000005328	KNOWN_BY_PROJECTION	protein_coding	APOBEC4	chromosome:C_jacchus3.2.1:18:1:47448759:1	22392017	22405341	D	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) [Source:HGNC Symbol;Acc:HGNC:32152]
ENSCJAG00000005253	KNOWN_BY_PROJECTION	protein_coding	ARPC5	chromosome:C_jacchus3.2.1:18:1:47448759:1	22423102	22432467	D	actin related protein 2/3 complex, subunit 5, 16kDa [Source:HGNC Symbol;Acc:HGNC:708]
ENSCJAG00000013464	NOVEL	protein_coding	IRGC	chromosome:C_jacchus3.2.1:22:1:49145316:1	36018587	36023920	D	Interferon-gamma-inducible GTPase IFGGE protein {ECO:0000313|EMBL:CBY65977.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024736}  [Source:UniProtKB/TrEMBL;Acc:F6RRK1]
ENSCJAG00000013416	KNOWN	protein_coding	SMG9	chromosome:C_jacchus3.2.1:22:1:49145316:1	36049653	36074217	R	Protein SMG9 {ECO:0000313|EMBL:JAB10937.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024717}  [Source:UniProtKB/TrEMBL;Acc:F6S2Q5]
ENSCJAG00000005237	KNOWN_BY_PROJECTION	protein_coding	NCF2	chromosome:C_jacchus3.2.1:18:1:47448759:1	22463608	22498274	D	neutrophil cytosolic factor 2 [Source:HGNC Symbol;Acc:HGNC:7661]
ENSCJAG00000001525	KNOWN	protein_coding	NCDN	chromosome:C_jacchus3.2.1:7:1:155834243:1	69900661	69909963	D	Neurochondrin isoform 1 {ECO:0000313|EMBL:JAB10202.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002725}  [Source:UniProtKB/TrEMBL;Acc:F7IQN7]
ENSCJAG00000013407	KNOWN_BY_PROJECTION	protein_coding	KCNN4	chromosome:C_jacchus3.2.1:22:1:49145316:1	36086408	36102651	R	potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 4 [Source:HGNC Symbol;Acc:HGNC:6293]
ENSCJAG00000001531	KNOWN	protein_coding	TFAP2E	chromosome:C_jacchus3.2.1:7:1:155834243:1	69917056	69938455	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002732}  [Source:UniProtKB/TrEMBL;Acc:F7IQM3]
ENSCJAG00000001547	KNOWN	protein_coding	PSMB2	chromosome:C_jacchus3.2.1:7:1:155834243:1	69946176	69982936	R	Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}  [Source:UniProtKB/TrEMBL;Acc:F7IKX7]
ENSCJAG00000013397	KNOWN_BY_PROJECTION	protein_coding	LYPD5	chromosome:C_jacchus3.2.1:22:1:49145316:1	36116002	36121763	R	LY6/PLAUR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:26397]
ENSCJAG00000001557	KNOWN_BY_PROJECTION	protein_coding	C1orf216	chromosome:C_jacchus3.2.1:7:1:155834243:1	70066354	70071533	R	chromosome 1 open reading frame 216 [Source:HGNC Symbol;Acc:HGNC:26800]
ENSCJAG00000032912	KNOWN_BY_PROJECTION	protein_coding	ZNF283	chromosome:C_jacchus3.2.1:22:1:49145316:1	36152784	36176705	D	zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
ENSCJAG00000038088	NOVEL	protein_coding	ENSCJAG00000038088	chromosome:C_jacchus3.2.1:22:1:49145316:1	36153560	36162852	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033704}  [Source:UniProtKB/TrEMBL;Acc:F6U1I9]
ENSCJAG00000018203	KNOWN	protein_coding	DCLK1	chromosome:C_jacchus3.2.1:5:1:159171411:1	148957867	149343563	R	Serine/threonine-protein kinase DCLK1 isoform 2 {ECO:0000313|EMBL:JAB22605.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033701}  [Source:UniProtKB/TrEMBL;Acc:F6U1Q8]
ENSCJAG00000013375	KNOWN_BY_PROJECTION	protein_coding	ZNF45	chromosome:C_jacchus3.2.1:22:1:49145316:1	36193964	36204697	R	zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
ENSCJAG00000013331	KNOWN_BY_PROJECTION	protein_coding	ZNF221	chromosome:C_jacchus3.2.1:22:1:49145316:1	36209558	36250298	D	zinc finger protein 221 [Source:HGNC Symbol;Acc:HGNC:13014]
ENSCJAG00000015108	NOVEL	protein_coding	ENSCJAG00000015108	chromosome:C_jacchus3.2.1:10:1:132174527:1	94161410	94161948	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027846}  [Source:UniProtKB/TrEMBL;Acc:F7GFY0]
ENSCJAG00000015006	KNOWN	protein_coding	DCAF5	chromosome:C_jacchus3.2.1:10:1:132174527:1	94295521	94402881	R	DDB1-and CUL4-associated factor 5 {ECO:0000313|EMBL:JAB18919.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027666}  [Source:UniProtKB/TrEMBL;Acc:F7GGR5]
ENSCJAG00000001559	KNOWN_BY_PROJECTION	protein_coding	CLSPN	chromosome:C_jacchus3.2.1:7:1:155834243:1	70088486	70120476	R	claspin [Source:HGNC Symbol;Acc:HGNC:19715]
ENSCJAG00000013321	KNOWN_BY_PROJECTION	protein_coding	ZNF226	chromosome:C_jacchus3.2.1:22:1:49145316:1	36289970	36395767	D	zinc finger protein 226 [Source:HGNC Symbol;Acc:HGNC:13019]
ENSCJAG00000014987	KNOWN_BY_PROJECTION	protein_coding	EXD2	chromosome:C_jacchus3.2.1:10:1:132174527:1	94439135	94478734	D	exonuclease 3'-5' domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20217]
ENSCJAG00000001610	KNOWN_BY_PROJECTION	protein_coding	AGO4	chromosome:C_jacchus3.2.1:7:1:155834243:1	70163485	70212843	D	argonaute RISC catalytic component 4 [Source:HGNC Symbol;Acc:HGNC:18424]
ENSCJAG00000005135	KNOWN	protein_coding	SMG7	chromosome:C_jacchus3.2.1:18:1:47448759:1	22499984	22581990	R	Protein SMG7 isoform 5 {ECO:0000313|EMBL:JAB20410.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042448}  [Source:UniProtKB/TrEMBL;Acc:F7A748]
ENSCJAG00000032023	KNOWN	protein_coding	AGO1	chromosome:C_jacchus3.2.1:7:1:155834243:1	70228231	70282105	D	Protein argonaute {ECO:0000256|RuleBase:RU361178}  [Source:UniProtKB/TrEMBL;Acc:F7GIF3]
ENSCJAG00000014947	KNOWN	protein_coding	GALNT16	chromosome:C_jacchus3.2.1:10:1:132174527:1	94500508	94594006	D	Putative polypeptide N-acetylgalactosaminyltransferase-like protein 1 {ECO:0000313|EMBL:JAB21268.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027587}  [Source:UniProtKB/TrEMBL;Acc:F7HF93]
ENSCJAG00000031580	KNOWN_BY_PROJECTION	protein_coding	AGO3	chromosome:C_jacchus3.2.1:7:1:155834243:1	70289907	70430426	D	argonaute RISC catalytic component 3 [Source:HGNC Symbol;Acc:HGNC:18421]
ENSCJAG00000013299	KNOWN_BY_PROJECTION	protein_coding	ZNF227	chromosome:C_jacchus3.2.1:22:1:49145316:1	36411248	36431078	D	zinc finger protein 227 [Source:HGNC Symbol;Acc:HGNC:13020]
ENSCJAG00000018188	NOVEL	protein_coding	ENSCJAG00000018188	chromosome:C_jacchus3.2.1:5:1:159171411:1	149391259	149435802	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033643}  [Source:UniProtKB/TrEMBL;Acc:F6QYQ3]
ENSCJAG00000001705	KNOWN	protein_coding	TEKT2	chromosome:C_jacchus3.2.1:7:1:155834243:1	70457750	70461767	D	Tektin-2 {ECO:0000313|EMBL:JAB14218.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003064}  [Source:UniProtKB/TrEMBL;Acc:F7G6Y1]
ENSCJAG00000018200	NOVEL	pseudogene	ENSCJAG00000018200	chromosome:C_jacchus3.2.1:5:1:159171411:1	149446527	149448423	D	<no descrition>
ENSCJAG00000031495	KNOWN_BY_PROJECTION	protein_coding	CCDC169	chromosome:C_jacchus3.2.1:5:1:159171411:1	149449529	149529071	R	coiled-coil domain containing 169 [Source:HGNC Symbol;Acc:HGNC:34361]
ENSCJAG00000013266	NOVEL	protein_coding	ENSCJAG00000013266	chromosome:C_jacchus3.2.1:22:1:49145316:1	36464251	36547753	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042458}  [Source:UniProtKB/TrEMBL;Acc:F6ZQ19]
ENSCJAG00000018170	KNOWN	protein_coding	SPG20	chromosome:C_jacchus3.2.1:5:1:159171411:1	149536528	149564883	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033600}  [Source:UniProtKB/TrEMBL;Acc:F6RWS0]
ENSCJAG00000001719	KNOWN_BY_PROJECTION	protein_coding	ADPRHL2	chromosome:C_jacchus3.2.1:7:1:155834243:1	70462298	70468239	D	ADP-ribosylhydrolase like 2 [Source:HGNC Symbol;Acc:HGNC:21304]
ENSCJAG00000008514	KNOWN	protein_coding	PEX7	chromosome:C_jacchus3.2.1:4:1:171630274:1	137425779	137514150	D	Peroxisomal biogenesis factor 7 {ECO:0000313|EMBL:JAB03878.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015687}  [Source:UniProtKB/TrEMBL;Acc:F7GNY8]
ENSCJAG00000005105	KNOWN_BY_PROJECTION	protein_coding	NMNAT2	chromosome:C_jacchus3.2.1:18:1:47448759:1	22636680	22813011	D	nicotinamide nucleotide adenylyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16789]
ENSCJAG00000018168	NOVEL	protein_coding	ENSCJAG00000018168	chromosome:C_jacchus3.2.1:5:1:159171411:1	149597931	149600579	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033595}  [Source:UniProtKB/TrEMBL;Acc:F6SHT6]
ENSCJAG00000001730	KNOWN_BY_PROJECTION	protein_coding	COL8A2	chromosome:C_jacchus3.2.1:7:1:155834243:1	70472138	70475299	R	collagen, type VIII, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2216]
ENSCJAG00000014940	KNOWN	protein_coding	ERH	chromosome:C_jacchus3.2.1:10:1:132174527:1	94626641	94639767	R	Enhancer of rudimentary homolog {ECO:0000256|PIRNR:PIRNR016393}  [Source:UniProtKB/TrEMBL;Acc:F7E9A4]
ENSCJAG00000018144	KNOWN_BY_PROJECTION	protein_coding	CCNA1	chromosome:C_jacchus3.2.1:5:1:159171411:1	149645114	149658241	D	cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]
ENSCJAG00000001734	KNOWN	protein_coding	TRAPPC3	chromosome:C_jacchus3.2.1:7:1:155834243:1	70514706	70526079	R	Trafficking protein particle complex subunit 3 isoform 1 {ECO:0000313|EMBL:JAB09159.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003117}  [Source:UniProtKB/TrEMBL;Acc:F7DWL8]
ENSCJAG00000001746	KNOWN_BY_PROJECTION	protein_coding	MAP7D1	chromosome:C_jacchus3.2.1:7:1:155834243:1	70533361	70556859	D	MAP7 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25514]
ENSCJAG00000014935	KNOWN	protein_coding	SLC39A9	chromosome:C_jacchus3.2.1:10:1:132174527:1	94639854	94701653	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027503}; Zinc transporter ZIP9 isoform 1 {ECO:0000313|EMBL:JAB07767.1}  [Source:UniProtKB/TrEMBL;Acc:F7EM48]
ENSCJAG00000001754	KNOWN_BY_PROJECTION	protein_coding	THRAP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	70593828	70673031	D	thyroid hormone receptor associated protein 3 [Source:HGNC Symbol;Acc:HGNC:22964]
ENSCJAG00000013239	KNOWN_BY_PROJECTION	protein_coding	ZNF180	chromosome:C_jacchus3.2.1:22:1:49145316:1	36579019	36601185	R	zinc finger protein 180 [Source:HGNC Symbol;Acc:HGNC:12970]
ENSCJAG00000001784	NOVEL	pseudogene	ENSCJAG00000001784	chromosome:C_jacchus3.2.1:7:1:155834243:1	70612826	70613178	R	<no descrition>
ENSCJAG00000001789	NOVEL	pseudogene	ENSCJAG00000001789	chromosome:C_jacchus3.2.1:7:1:155834243:1	70632361	70633223	D	<no descrition>
ENSCJAG00000008521	NOVEL	protein_coding	ENSCJAG00000008521	chromosome:C_jacchus3.2.1:4:1:171630274:1	137496199	137497595	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052199}  [Source:UniProtKB/TrEMBL;Acc:F7HVQ3]
ENSCJAG00000008524	KNOWN_BY_PROJECTION	protein_coding	SLC35D3	chromosome:C_jacchus3.2.1:4:1:171630274:1	137521902	137525119	D	solute carrier family 35, member D3 [Source:HGNC Symbol;Acc:HGNC:15621]
ENSCJAG00000001796	KNOWN_BY_PROJECTION	protein_coding	SH3D21	chromosome:C_jacchus3.2.1:7:1:155834243:1	70675298	70692291	D	SH3 domain containing 21 [Source:HGNC Symbol;Acc:HGNC:26236]
ENSCJAG00000013231	KNOWN_BY_PROJECTION	protein_coding	IGSF23	chromosome:C_jacchus3.2.1:22:1:49145316:1	36663367	36675728	D	immunoglobulin superfamily, member 23 [Source:HGNC Symbol;Acc:HGNC:40040]
ENSCJAG00000005053	KNOWN	protein_coding	LAMC2	chromosome:C_jacchus3.2.1:18:1:47448759:1	22819069	22882286	R	Laminin subunit gamma-2 isoform a {ECO:0000313|EMBL:JAB03106.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009310}  [Source:UniProtKB/TrEMBL;Acc:F7D6I8]
ENSCJAG00000035758	NOVEL	protein_coding	ENSCJAG00000035758	chromosome:C_jacchus3.2.1:4:1:171630274:1	137602151	137607588	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052355}  [Source:UniProtKB/TrEMBL;Acc:F7IR33]
ENSCJAG00000001807	KNOWN	protein_coding	EVA1B	chromosome:C_jacchus3.2.1:7:1:155834243:1	70690507	70692591	R	Protein FAM176B {ECO:0000313|EMBL:JAB01947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003245}  [Source:UniProtKB/TrEMBL;Acc:F7GPW2]
ENSCJAG00000018982	KNOWN_BY_PROJECTION	protein_coding	IL20RA	chromosome:C_jacchus3.2.1:4:1:171630274:1	137610051	137649018	R	interleukin 20 receptor, alpha [Source:HGNC Symbol;Acc:HGNC:6003]
ENSCJAG00000001818	KNOWN	protein_coding	STK40	chromosome:C_jacchus3.2.1:7:1:155834243:1	70705688	70725382	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003262}  [Source:UniProtKB/TrEMBL;Acc:F7GPL5]
ENSCJAG00000013209	NOVEL	protein_coding	PVR	chromosome:C_jacchus3.2.1:22:1:49145316:1	36690174	36708545	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024274}  [Source:UniProtKB/TrEMBL;Acc:F7EXN4]
ENSCJAG00000001826	KNOWN	protein_coding	OSCP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	70779267	70813846	R	Protein OSCP1 isoform 1 {ECO:0000313|EMBL:JAB03495.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003302}  [Source:UniProtKB/TrEMBL;Acc:F7EN43]
ENSCJAG00000001852	KNOWN	protein_coding	MRPS15	chromosome:C_jacchus3.2.1:7:1:155834243:1	70818599	70827257	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003315}  [Source:UniProtKB/TrEMBL;Acc:F7EMW6]
ENSCJAG00000018140	KNOWN	protein_coding	SERTM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	149914298	150097387	D	Serine-rich and transmembrane domain-containing protein 1 {ECO:0000313|EMBL:JAB16977.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046245}  [Source:UniProtKB/TrEMBL;Acc:F7BBX9]
ENSCJAG00000035101	NOVEL	pseudogene	ENSCJAG00000035101	chromosome:C_jacchus3.2.1:5:1:159171411:1	149974301	149974824	R	<no descrition>
ENSCJAG00000018991	KNOWN_BY_PROJECTION	protein_coding	IL22RA2	chromosome:C_jacchus3.2.1:4:1:171630274:1	137732126	137758345	R	interleukin 22 receptor, alpha 2 [Source:HGNC Symbol;Acc:HGNC:14901]
ENSCJAG00000018138	NOVEL	protein_coding	ENSCJAG00000018138	chromosome:C_jacchus3.2.1:5:1:159171411:1	150026689	150029387	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033540}  [Source:UniProtKB/TrEMBL;Acc:F6TFX6]
ENSCJAG00000018134	NOVEL	protein_coding	ENSCJAG00000018134	chromosome:C_jacchus3.2.1:5:1:159171411:1	150032900	150043125	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033535}  [Source:UniProtKB/TrEMBL;Acc:F6TRM8]
ENSCJAG00000001860	KNOWN_BY_PROJECTION	protein_coding	CSF3R	chromosome:C_jacchus3.2.1:7:1:155834243:1	70829366	70845962	R	colony stimulating factor 3 receptor (granulocyte) [Source:HGNC Symbol;Acc:HGNC:2439]
ENSCJAG00000013193	KNOWN_BY_PROJECTION	protein_coding	CEACAM19	chromosome:C_jacchus3.2.1:22:1:49145316:1	36719273	36738105	D	carcinoembryonic antigen-related cell adhesion molecule 19 [Source:HGNC Symbol;Acc:HGNC:31951]
ENSCJAG00000001869	NOVEL	pseudogene	ENSCJAG00000001869	chromosome:C_jacchus3.2.1:7:1:155834243:1	70851561	70852400	R	<no descrition>
ENSCJAG00000013177	KNOWN_BY_PROJECTION	protein_coding	CEACAM16	chromosome:C_jacchus3.2.1:22:1:49145316:1	36752279	36761742	D	carcinoembryonic antigen-related cell adhesion molecule 16 [Source:HGNC Symbol;Acc:HGNC:31948]
ENSCJAG00000032494	NOVEL	protein_coding	ENSCJAG00000032494	chromosome:C_jacchus3.2.1:10:1:132174527:1	94704451	94727789	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048860}  [Source:UniProtKB/TrEMBL;Acc:F6SMV9]
ENSCJAG00000014931	KNOWN	protein_coding	PLEKHD1	chromosome:C_jacchus3.2.1:10:1:132174527:1	94754730	94776364	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027492}  [Source:UniProtKB/TrEMBL;Acc:F7FEB7]
ENSCJAG00000018099	KNOWN	protein_coding	ALG5	chromosome:C_jacchus3.2.1:5:1:159171411:1	150161483	150212501	R	Dolichyl-phosphate beta-glucosyltransferase isoform 1 {ECO:0000313|EMBL:JAB23394.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033506}  [Source:UniProtKB/TrEMBL;Acc:F6PIQ2]
ENSCJAG00000014928	KNOWN_BY_PROJECTION	protein_coding	CCDC177	chromosome:C_jacchus3.2.1:10:1:132174527:1	94821028	94823143	R	coiled-coil domain containing 177 [Source:HGNC Symbol;Acc:HGNC:23243]
ENSCJAG00000014926	KNOWN_BY_PROJECTION	protein_coding	SUSD6	chromosome:C_jacchus3.2.1:10:1:132174527:1	94957563	94964572	D	sushi domain containing 6 [Source:HGNC Symbol;Acc:HGNC:19956]
ENSCJAG00000001873	KNOWN	protein_coding	GRIK3	chromosome:C_jacchus3.2.1:7:1:155834243:1	71182895	71415710	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003451}  [Source:UniProtKB/TrEMBL;Acc:F7GZL5]
ENSCJAG00000014884	KNOWN	protein_coding	SRSF5	chromosome:C_jacchus3.2.1:10:1:132174527:1	95020803	95026025	D	Serine/arginine-rich splicing factor 5 {ECO:0000313|EMBL:JAB10149.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027476}  [Source:UniProtKB/TrEMBL;Acc:F7FT56]
ENSCJAG00000018078	KNOWN	protein_coding	EXOSC8	chromosome:C_jacchus3.2.1:5:1:159171411:1	150213690	150222803	D	Exosome complex component RRP43 {ECO:0000313|EMBL:JAB35434.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033446}  [Source:UniProtKB/TrEMBL;Acc:F6R171]
ENSCJAG00000001921	KNOWN_BY_PROJECTION	protein_coding	ZC3H12A	chromosome:C_jacchus3.2.1:7:1:155834243:1	71861997	71870500	D	zinc finger CCCH-type containing 12A [Source:HGNC Symbol;Acc:HGNC:26259]
ENSCJAG00000001927	KNOWN_BY_PROJECTION	protein_coding	MEAF6	chromosome:C_jacchus3.2.1:7:1:155834243:1	71879349	71902104	R	MYST/Esa1-associated factor 6 [Source:HGNC Symbol;Acc:HGNC:25674]
ENSCJAG00000004998	KNOWN	protein_coding	LAMC1	chromosome:C_jacchus3.2.1:18:1:47448759:1	22925720	23045487	R	Laminin subunit gamma-1 {ECO:0000313|EMBL:JAB06006.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009197}  [Source:UniProtKB/TrEMBL;Acc:F7II44]
ENSCJAG00000013159	KNOWN_BY_PROJECTION	protein_coding	BCL3	chromosome:C_jacchus3.2.1:22:1:49145316:1	36800929	36816253	D	B-cell CLL/lymphoma 3 [Source:HGNC Symbol;Acc:HGNC:998]
ENSCJAG00000013152	NOVEL	pseudogene	ENSCJAG00000013152	chromosome:C_jacchus3.2.1:22:1:49145316:1	36823969	36824789	R	<no descrition>
ENSCJAG00000001963	KNOWN_BY_PROJECTION	protein_coding	SNIP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	71926315	71943150	R	Smad nuclear interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:30587]
ENSCJAG00000013125	KNOWN_BY_PROJECTION	protein_coding	CBLC	chromosome:C_jacchus3.2.1:22:1:49145316:1	36834716	36853581	D	Cbl proto-oncogene C, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:15961]
ENSCJAG00000001976	KNOWN_BY_PROJECTION	protein_coding	DNALI1	chromosome:C_jacchus3.2.1:7:1:155834243:1	71945739	71953486	D	dynein, axonemal, light intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:14353]
ENSCJAG00000019002	KNOWN	protein_coding	IFNGR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	137783600	137804534	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035318}  [Source:UniProtKB/TrEMBL;Acc:F7I6G9]
ENSCJAG00000001980	NOVEL	protein_coding	ENSCJAG00000001980	chromosome:C_jacchus3.2.1:7:1:155834243:1	71955423	71982968	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043222}  [Source:UniProtKB/TrEMBL;Acc:F7ICQ3]
ENSCJAG00000019011	NOVEL	pseudogene	ENSCJAG00000019011	chromosome:C_jacchus3.2.1:4:1:171630274:1	138089117	138089935	R	<no descrition>
ENSCJAG00000019015	NOVEL	protein_coding	ENSCJAG00000019015	chromosome:C_jacchus3.2.1:4:1:171630274:1	138189446	138189950	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035324}  [Source:UniProtKB/TrEMBL;Acc:F7I6D8]
ENSCJAG00000034822	KNOWN_BY_PROJECTION	protein_coding	PTPN11	chromosome:C_jacchus3.2.1:4:1:171630274:1	138268760	138269570	R	protein tyrosine phosphatase, non-receptor type 11 [Source:HGNC Symbol;Acc:HGNC:9644]
ENSCJAG00000019019	KNOWN	protein_coding	TNFAIP3	chromosome:C_jacchus3.2.1:4:1:171630274:1	138429607	138444917	D	Tumor necrosis factor alpha-induced protein 3 {ECO:0000313|EMBL:JAB02705.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048951}  [Source:UniProtKB/TrEMBL;Acc:F6Q7E5]
ENSCJAG00000001998	KNOWN_BY_PROJECTION	protein_coding	RSPO1	chromosome:C_jacchus3.2.1:7:1:155834243:1	72000169	72027125	R	R-spondin 1 [Source:HGNC Symbol;Acc:HGNC:21679]
ENSCJAG00000002007	KNOWN_BY_PROJECTION	protein_coding	C1orf109	chromosome:C_jacchus3.2.1:7:1:155834243:1	72080801	72092703	R	chromosome 1 open reading frame 109 [Source:HGNC Symbol;Acc:HGNC:26039]
ENSCJAG00000013105	KNOWN_BY_PROJECTION	protein_coding	BCAM	chromosome:C_jacchus3.2.1:22:1:49145316:1	36860266	36876055	D	basal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]
ENSCJAG00000014870	KNOWN_BY_PROJECTION	protein_coding	SLC10A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	95030269	95051085	R	solute carrier family 10 (sodium/bile acid cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10905]
ENSCJAG00000002008	KNOWN_BY_PROJECTION	protein_coding	CDCA8	chromosome:C_jacchus3.2.1:7:1:155834243:1	72092966	72109933	D	cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]
ENSCJAG00000019024	KNOWN_BY_PROJECTION	protein_coding	PERP	chromosome:C_jacchus3.2.1:4:1:171630274:1	138626399	138643820	R	PERP, TP53 apoptosis effector [Source:HGNC Symbol;Acc:HGNC:17637]
ENSCJAG00000018002	KNOWN	protein_coding	SUPT20H	chromosome:C_jacchus3.2.1:5:1:159171411:1	150222501	150273795	R	Protein FAM48A isoform a {ECO:0000313|EMBL:JAB07086.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033395}  [Source:UniProtKB/TrEMBL;Acc:F6SJP4]
ENSCJAG00000014855	KNOWN	protein_coding	SMOC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	95133811	95263992	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027378}  [Source:UniProtKB/TrEMBL;Acc:F7HAC5]
ENSCJAG00000002019	KNOWN_BY_PROJECTION	protein_coding	EPHA10	chromosome:C_jacchus3.2.1:7:1:155834243:1	72116172	72165705	R	EPH receptor A10 [Source:HGNC Symbol;Acc:HGNC:19987]
ENSCJAG00000002066	KNOWN_BY_PROJECTION	protein_coding	MANEAL	chromosome:C_jacchus3.2.1:7:1:155834243:1	72198156	72210081	D	mannosidase, endo-alpha-like [Source:HGNC Symbol;Acc:HGNC:26452]
ENSCJAG00000014823	KNOWN_BY_PROJECTION	protein_coding	SLC8A3	chromosome:C_jacchus3.2.1:10:1:132174527:1	95297287	95454133	R	solute carrier family 8 (sodium/calcium exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11070]
ENSCJAG00000002078	KNOWN_BY_PROJECTION	protein_coding	YRDC	chromosome:C_jacchus3.2.1:7:1:155834243:1	72210509	72217128	R	yrdC N(6)-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905]
ENSCJAG00000002094	KNOWN	protein_coding	C1ORF122	chromosome:C_jacchus3.2.1:7:1:155834243:1	72215764	72217596	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003771}  [Source:UniProtKB/TrEMBL;Acc:F7E7X6]
ENSCJAG00000002097	KNOWN_BY_PROJECTION	protein_coding	MTF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	72223744	72274359	R	metal-regulatory transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:7428]
ENSCJAG00000004967	KNOWN_BY_PROJECTION	protein_coding	SHCBP1L	chromosome:C_jacchus3.2.1:18:1:47448759:1	23045697	23163159	D	SHC SH2-domain binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:16788]
ENSCJAG00000002125	KNOWN_BY_PROJECTION	protein_coding	INPP5B	chromosome:C_jacchus3.2.1:7:1:155834243:1	72276544	72348210	R	inositol polyphosphate-5-phosphatase, 75kDa [Source:HGNC Symbol;Acc:HGNC:6077]
ENSCJAG00000034647	NOVEL	pseudogene	ENSCJAG00000034647	chromosome:C_jacchus3.2.1:18:1:47448759:1	23060847	23061368	R	<no descrition>
ENSCJAG00000002176	KNOWN	protein_coding	SF3A3	chromosome:C_jacchus3.2.1:7:1:155834243:1	72357515	72389140	R	Splicing factor 3A subunit 3 {ECO:0000313|EMBL:JAB11710.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004017}  [Source:UniProtKB/TrEMBL;Acc:F6YR28]
ENSCJAG00000004821	KNOWN	protein_coding	DHX9	chromosome:C_jacchus3.2.1:18:1:47448759:1	23177556	23227789	R	ATP-dependent RNA helicase A {ECO:0000313|EMBL:JAB06797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009034}  [Source:UniProtKB/TrEMBL;Acc:F7I8T9]
ENSCJAG00000013016	KNOWN_BY_PROJECTION	protein_coding	CLPTM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	36892211	37040614	D	cleft lip and palate associated transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:2087]
ENSCJAG00000002239	KNOWN	protein_coding	FHL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	72397703	72400441	R	Four and a half LIM domains protein 3 isoform 1 {ECO:0000313|EMBL:JAB04276.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004027}  [Source:UniProtKB/TrEMBL;Acc:F6YQN7]
ENSCJAG00000017999	NOVEL	protein_coding	ENSCJAG00000017999	chromosome:C_jacchus3.2.1:5:1:159171411:1	150556851	150557903	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033235}  [Source:UniProtKB/TrEMBL;Acc:F6R2I3]
ENSCJAG00000013088	NOVEL	protein_coding	PRR2	chromosome:C_jacchus3.2.1:22:1:49145316:1	36893719	36939035	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024055}  [Source:UniProtKB/TrEMBL;Acc:F7GND2]
ENSCJAG00000002244	KNOWN	protein_coding	UTP11L	chromosome:C_jacchus3.2.1:7:1:155834243:1	72417790	72429665	D	Putative U3 small nucleolar RNA-associated protein 11 {ECO:0000313|EMBL:JAB03773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004052}  [Source:UniProtKB/TrEMBL;Acc:F6XJA0]
ENSCJAG00000019028	NOVEL	protein_coding	ENSCJAG00000019028	chromosome:C_jacchus3.2.1:4:1:171630274:1	138793868	138847442	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035354}  [Source:UniProtKB/TrEMBL;Acc:F7HZD5]
ENSCJAG00000002260	NOVEL	pseudogene	ENSCJAG00000002260	chromosome:C_jacchus3.2.1:7:1:155834243:1	72807490	72807883	R	<no descrition>
ENSCJAG00000033044	NOVEL	protein_coding	ENSCJAG00000033044	chromosome:C_jacchus3.2.1:4:1:171630274:1	138850168	138890687	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049355}  [Source:UniProtKB/TrEMBL;Acc:F6YGW3]
ENSCJAG00000002261	KNOWN_BY_PROJECTION	protein_coding	RRAGC	chromosome:C_jacchus3.2.1:7:1:155834243:1	73253567	73273153	R	Ras-related GTP binding C [Source:HGNC Symbol;Acc:HGNC:19902]
ENSCJAG00000019041	NOVEL	pseudogene	ENSCJAG00000019041	chromosome:C_jacchus3.2.1:4:1:171630274:1	138908945	138909107	D	<no descrition>
ENSCJAG00000019053	NOVEL	protein_coding	ENSCJAG00000019053	chromosome:C_jacchus3.2.1:4:1:171630274:1	138930165	138931099	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035387}  [Source:UniProtKB/TrEMBL;Acc:F7HWY8]
ENSCJAG00000019060	KNOWN	protein_coding	HEBP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	138970458	138980334	D	Heme-binding protein 2 {ECO:0000313|EMBL:JAB09128.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035393}  [Source:UniProtKB/TrEMBL;Acc:F7HWX4]
ENSCJAG00000036558	KNOWN	protein_coding	MYCBP	chromosome:C_jacchus3.2.1:7:1:155834243:1	73276321	73285156	R	C-Myc-binding protein {ECO:0000313|EMBL:JAB08462.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041120}  [Source:UniProtKB/TrEMBL;Acc:F7DXG1]
ENSCJAG00000002288	KNOWN_BY_PROJECTION	protein_coding	GJA9	chromosome:C_jacchus3.2.1:7:1:155834243:1	73277345	73294744	R	gap junction protein, alpha 9, 59kDa [Source:HGNC Symbol;Acc:HGNC:19155]
ENSCJAG00000019042	KNOWN_BY_PROJECTION	protein_coding	NHSL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	138988863	139140569	R	NHS-like 1 [Source:HGNC Symbol;Acc:HGNC:21021]
ENSCJAG00000017968	KNOWN	protein_coding	POSTN	chromosome:C_jacchus3.2.1:5:1:159171411:1	150752700	150788033	R	Periostin isoform 1 {ECO:0000313|EMBL:JAB23422.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033233}  [Source:UniProtKB/TrEMBL;Acc:F6R2K3]
ENSCJAG00000002293	KNOWN	protein_coding	RHBDL2	chromosome:C_jacchus3.2.1:7:1:155834243:1	73296509	73339011	R	Rhomboid-related protein 2 {ECO:0000313|EMBL:JAB09007.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004142}  [Source:UniProtKB/TrEMBL;Acc:F7C7A4]
ENSCJAG00000032696	NOVEL	protein_coding	ENSCJAG00000032696	chromosome:C_jacchus3.2.1:22:1:49145316:1	36929890	36930259	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044903}  [Source:UniProtKB/TrEMBL;Acc:F7H0M2]
ENSCJAG00000013072	KNOWN	protein_coding	TOMM40	chromosome:C_jacchus3.2.1:22:1:49145316:1	36941633	36952800	D	Mitochondrial import receptor subunit TOM40 homolog {ECO:0000313|EMBL:JAB02419.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024012}  [Source:UniProtKB/TrEMBL;Acc:F7H3X7]
ENSCJAG00000034029	NOVEL	pseudogene	ENSCJAG00000034029	chromosome:C_jacchus3.2.1:7:1:155834243:1	73359864	73360311	D	<no descrition>
ENSCJAG00000008069	NOVEL	pseudogene	ENSCJAG00000008069	chromosome:C_jacchus3.2.1:4:1:171630274:1	139177424	139177681	D	<no descrition>
ENSCJAG00000017243	NOVEL	protein_coding	ENSCJAG00000017243	chromosome:C_jacchus3.2.1:7:1:155834243:1	73364990	73367891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031718}  [Source:UniProtKB/TrEMBL;Acc:F7I0M9]
ENSCJAG00000034082	NOVEL	pseudogene	ENSCJAG00000034082	chromosome:C_jacchus3.2.1:4:1:171630274:1	139224305	139225054	R	<no descrition>
ENSCJAG00000036144	NOVEL	protein_coding	ENSCJAG00000036144	chromosome:C_jacchus3.2.1:7:1:155834243:1	73370338	73374554	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052075}  [Source:UniProtKB/TrEMBL;Acc:F7IGW6]
ENSCJAG00000013062	KNOWN	protein_coding	APOE	chromosome:C_jacchus3.2.1:22:1:49145316:1	36955544	36959596	D	Apolipoprotein E {ECO:0000313|EMBL:JAB51081.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023984}  [Source:UniProtKB/TrEMBL;Acc:F7EFI1]
ENSCJAG00000001478	NOVEL	protein_coding	ENSCJAG00000001478	chromosome:C_jacchus3.2.1:7:1:155834243:1	73373154	73374739	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042179}  [Source:UniProtKB/TrEMBL;Acc:F6UM07]
ENSCJAG00000004504	NOVEL	pseudogene	ENSCJAG00000004504	chromosome:C_jacchus3.2.1:7:1:155834243:1	73386229	73386412	D	<no descrition>
ENSCJAG00000038041	NOVEL	protein_coding	ENSCJAG00000038041	chromosome:C_jacchus3.2.1:7:1:155834243:1	73393317	73401710	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052122}  [Source:UniProtKB/TrEMBL;Acc:F7I2P8]
ENSCJAG00000002309	KNOWN	protein_coding	AKIRIN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	73419912	73431685	D	Akirin-1 isoform 1 {ECO:0000313|EMBL:JAB06283.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004175}  [Source:UniProtKB/TrEMBL;Acc:F7B8Z5]
ENSCJAG00000019065	KNOWN_BY_PROJECTION	protein_coding	CCDC28A	chromosome:C_jacchus3.2.1:4:1:171630274:1	139359131	139379359	D	coiled-coil domain containing 28A [Source:HGNC Symbol;Acc:HGNC:21098]
ENSCJAG00000002317	KNOWN	protein_coding	ENSCJAG00000002317	chromosome:C_jacchus3.2.1:7:1:155834243:1	73450350	73459419	D	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 {ECO:0000313|EMBL:JAB27141.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004179}  [Source:UniProtKB/TrEMBL;Acc:F7B8U9]
ENSCJAG00000013058	KNOWN_BY_PROJECTION	protein_coding	APOC1	chromosome:C_jacchus3.2.1:22:1:49145316:1	36965753	36970521	D	apolipoprotein C-I [Source:HGNC Symbol;Acc:HGNC:607]
ENSCJAG00000013050	KNOWN_BY_PROJECTION	protein_coding	APOC4	chromosome:C_jacchus3.2.1:22:1:49145316:1	36981643	36986117	D	apolipoprotein C-IV [Source:HGNC Symbol;Acc:HGNC:611]
ENSCJAG00000013040	KNOWN	protein_coding	APOC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	36989376	36989751	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023943}  [Source:UniProtKB/TrEMBL;Acc:F7FLE1]
ENSCJAG00000019079	KNOWN_BY_PROJECTION	protein_coding	ECT2L	chromosome:C_jacchus3.2.1:4:1:171630274:1	139400622	139498765	D	epithelial cell transforming 2 like [Source:HGNC Symbol;Acc:HGNC:21118]
ENSCJAG00000004793	KNOWN	protein_coding	NPL	chromosome:C_jacchus3.2.1:18:1:47448759:1	23239197	23275548	R	N-acetylneuraminate lyase isoform 1 {ECO:0000313|EMBL:JAB07516.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008787}  [Source:UniProtKB/TrEMBL;Acc:F7IS01]
ENSCJAG00000012991	KNOWN_BY_PROJECTION	protein_coding	RELB	chromosome:C_jacchus3.2.1:22:1:49145316:1	37050417	37093851	D	v-rel avian reticuloendotheliosis viral oncogene homolog B [Source:HGNC Symbol;Acc:HGNC:9956]
ENSCJAG00000004758	KNOWN	protein_coding	RGS8	chromosome:C_jacchus3.2.1:18:1:47448759:1	23387808	23414311	D	Regulator of G-protein signaling 8 isoform 1 {ECO:0000313|EMBL:JAB16647.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008703}  [Source:UniProtKB/TrEMBL;Acc:F7HSZ2]
ENSCJAG00000014817	NOVEL	pseudogene	ENSCJAG00000014817	chromosome:C_jacchus3.2.1:10:1:132174527:1	95517719	95519760	R	<no descrition>
ENSCJAG00000014815	KNOWN	protein_coding	COX16	chromosome:C_jacchus3.2.1:10:1:132174527:1	95587806	95612581	R	Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB10401.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027282}  [Source:UniProtKB/TrEMBL;Acc:F7FEM2]
ENSCJAG00000014809	KNOWN	protein_coding	SYNJ2BP	chromosome:C_jacchus3.2.1:10:1:132174527:1	95626829	95676527	R	Synaptojanin-2-binding protein {ECO:0000313|EMBL:JAB03328.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027277}  [Source:UniProtKB/TrEMBL;Acc:F7FET8]
ENSCJAG00000034549	NOVEL	pseudogene	ENSCJAG00000034549	chromosome:C_jacchus3.2.1:4:1:171630274:1	139443042	139443399	D	<no descrition>
ENSCJAG00000019093	KNOWN	protein_coding	REPS1	chromosome:C_jacchus3.2.1:4:1:171630274:1	139499558	139582931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035462}  [Source:UniProtKB/TrEMBL;Acc:F7II40]
ENSCJAG00000012926	KNOWN_BY_PROJECTION	protein_coding	CLASRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	37094331	37126601	D	CLK4-associating serine/arginine rich protein [Source:HGNC Symbol;Acc:HGNC:17731]
ENSCJAG00000012912	KNOWN_BY_PROJECTION	protein_coding	ZNF296	chromosome:C_jacchus3.2.1:22:1:49145316:1	37127235	37133252	R	zinc finger protein 296 [Source:HGNC Symbol;Acc:HGNC:15981]
ENSCJAG00000017909	KNOWN	protein_coding	TRPC4	chromosome:C_jacchus3.2.1:5:1:159171411:1	150828959	151026456	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050931}  [Source:UniProtKB/TrEMBL;Acc:F6TXE0]
ENSCJAG00000014796	KNOWN	protein_coding	MED6	chromosome:C_jacchus3.2.1:10:1:132174527:1	95802898	95822520	R	Mediator of RNA polymerase II transcription subunit 6 {ECO:0000256|PIRNR:PIRNR023869}  [Source:UniProtKB/TrEMBL;Acc:F7FTV4]
ENSCJAG00000022840	KNOWN	protein_coding	GEMIN7	chromosome:C_jacchus3.2.1:22:1:49145316:1	37135896	37142015	D	Gem-associated protein 7 {ECO:0000313|EMBL:JAB01600.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041421}  [Source:UniProtKB/TrEMBL;Acc:F7CW25]
ENSCJAG00000002323	KNOWN	protein_coding	MACF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	73498774	73910304	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004544}  [Source:UniProtKB/TrEMBL;Acc:F7C4Z4]
ENSCJAG00000012886	KNOWN_BY_PROJECTION	protein_coding	PPP1R37	chromosome:C_jacchus3.2.1:22:1:49145316:1	37144248	37199892	D	protein phosphatase 1, regulatory subunit 37 [Source:HGNC Symbol;Acc:HGNC:27607]
ENSCJAG00000012910	NOVEL	pseudogene	ENSCJAG00000012910	chromosome:C_jacchus3.2.1:22:1:49145316:1	37187417	37187858	D	<no descrition>
ENSCJAG00000014802	NOVEL	protein_coding	ENSCJAG00000014802	chromosome:C_jacchus3.2.1:10:1:132174527:1	95813392	95814556	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027268}  [Source:UniProtKB/TrEMBL;Acc:F7FF86]
ENSCJAG00000012882	KNOWN_BY_PROJECTION	protein_coding	NKPD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	37206013	37207846	R	NTPase, KAP family P-loop domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24739]
ENSCJAG00000012869	KNOWN	protein_coding	TRAPPC6A	chromosome:C_jacchus3.2.1:22:1:49145316:1	37216252	37228654	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023586}  [Source:UniProtKB/TrEMBL;Acc:F7EGX1]
ENSCJAG00000014786	KNOWN	protein_coding	TTC9	chromosome:C_jacchus3.2.1:10:1:132174527:1	95862537	95896083	D	Tetratricopeptide repeat protein 9A {ECO:0000313|EMBL:JAB27508.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027244}  [Source:UniProtKB/TrEMBL;Acc:F7G5Z7]
ENSCJAG00000014758	KNOWN_BY_PROJECTION	protein_coding	MAP3K9	chromosome:C_jacchus3.2.1:10:1:132174527:1	95952548	96031211	R	mitogen-activated protein kinase kinase kinase 9 [Source:HGNC Symbol;Acc:HGNC:6861]
ENSCJAG00000004748	KNOWN	protein_coding	RGS16	chromosome:C_jacchus3.2.1:18:1:47448759:1	23456381	23461254	D	Regulator of G-protein signaling 16 {ECO:0000313|EMBL:JAB04007.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008640}  [Source:UniProtKB/TrEMBL;Acc:F7IFA1]
ENSCJAG00000012780	NOVEL	pseudogene	ENSCJAG00000012780	chromosome:C_jacchus3.2.1:22:1:49145316:1	37231046	37231645	D	<no descrition>
ENSCJAG00000004725	KNOWN_BY_PROJECTION	protein_coding	RNASEL	chromosome:C_jacchus3.2.1:18:1:47448759:1	23473623	23491787	D	ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) [Source:HGNC Symbol;Acc:HGNC:10050]
ENSCJAG00000012854	KNOWN_BY_PROJECTION	protein_coding	EXOC3L2	chromosome:C_jacchus3.2.1:22:1:49145316:1	37263806	37283607	R	exocyst complex component 3-like 2 [Source:HGNC Symbol;Acc:HGNC:30162]
ENSCJAG00000012801	KNOWN	protein_coding	MARK4	chromosome:C_jacchus3.2.1:22:1:49145316:1	37304534	37353241	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023535}  [Source:UniProtKB/TrEMBL;Acc:F7I8M6]
ENSCJAG00000004689	NOVEL	protein_coding	ENSCJAG00000004689	chromosome:C_jacchus3.2.1:18:1:47448759:1	23504926	23592088	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050727}  [Source:UniProtKB/TrEMBL;Acc:F7E552]
ENSCJAG00000019110	KNOWN	protein_coding	ENSCJAG00000019110	chromosome:C_jacchus3.2.1:4:1:171630274:1	139623718	139640795	D	Costars family protein ABRACL {ECO:0000313|EMBL:JAB05872.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035467}  [Source:UniProtKB/TrEMBL;Acc:F7II35]
ENSCJAG00000019112	NOVEL	pseudogene	ENSCJAG00000019112	chromosome:C_jacchus3.2.1:4:1:171630274:1	139663700	139665288	D	<no descrition>
ENSCJAG00000019113	KNOWN_BY_PROJECTION	protein_coding	HECA	chromosome:C_jacchus3.2.1:4:1:171630274:1	139760526	139771861	D	headcase homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21041]
ENSCJAG00000004654	KNOWN	protein_coding	GLUL	chromosome:C_jacchus3.2.1:18:1:47448759:1	23652501	23664232	D	Glutamine synthetase {ECO:0000256|RuleBase:RU004356}  [Source:UniProtKB/TrEMBL;Acc:F7HDF1]
ENSCJAG00000014664	KNOWN	protein_coding	PCNX	chromosome:C_jacchus3.2.1:10:1:132174527:1	96139332	96342661	D	Pecanex-like protein 1 {ECO:0000313|EMBL:JAB51734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027162}  [Source:UniProtKB/TrEMBL;Acc:F7HAE4]
ENSCJAG00000004652	KNOWN_BY_PROJECTION	protein_coding	ZNF648	chromosome:C_jacchus3.2.1:18:1:47448759:1	23992760	24000375	D	zinc finger protein 648 [Source:HGNC Symbol;Acc:HGNC:18190]
ENSCJAG00000012790	KNOWN	protein_coding	CKM	chromosome:C_jacchus3.2.1:22:1:49145316:1	37357527	37378508	R	Creatine kinase M-type {ECO:0000313|EMBL:JAB08437.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023444}  [Source:UniProtKB/TrEMBL;Acc:F7IQ67]
ENSCJAG00000012757	KNOWN_BY_PROJECTION	protein_coding	KLC3	chromosome:C_jacchus3.2.1:22:1:49145316:1	37402839	37409939	D	kinesin light chain 3 [Source:HGNC Symbol;Acc:HGNC:20717]
ENSCJAG00000002503	NOVEL	protein_coding	ENSCJAG00000002503	chromosome:C_jacchus3.2.1:7:1:155834243:1	73832925	73836059	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004548}  [Source:UniProtKB/TrEMBL;Acc:F7C4W7]
ENSCJAG00000002504	NOVEL	protein_coding	ENSCJAG00000002504	chromosome:C_jacchus3.2.1:7:1:155834243:1	73915013	73949882	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043102}  [Source:UniProtKB/TrEMBL;Acc:F7IPM6]
ENSCJAG00000019115	KNOWN	protein_coding	TXLNB	chromosome:C_jacchus3.2.1:4:1:171630274:1	139843898	139893956	R	Beta-taxilin {ECO:0000313|EMBL:JAB37578.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035487}  [Source:UniProtKB/TrEMBL;Acc:F7IFR7]
ENSCJAG00000002509	NOVEL	protein_coding	ENSCJAG00000002509	chromosome:C_jacchus3.2.1:7:1:155834243:1	73937696	73942197	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004560}  [Source:UniProtKB/TrEMBL;Acc:F7BP96]
ENSCJAG00000002512	KNOWN	protein_coding	PABPC4	chromosome:C_jacchus3.2.1:7:1:155834243:1	73951368	73999160	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004606}  [Source:UniProtKB/TrEMBL;Acc:F6YMI1]
ENSCJAG00000002544	NOVEL	pseudogene	ENSCJAG00000002544	chromosome:C_jacchus3.2.1:7:1:155834243:1	73951843	73952254	D	<no descrition>
ENSCJAG00000012716	KNOWN_BY_PROJECTION	protein_coding	ERCC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	37410009	37431126	R	excision repair cross-complementation group 2 [Source:HGNC Symbol;Acc:HGNC:3434]
ENSCJAG00000002546	NOVEL	protein_coding	ENSCJAG00000002546	chromosome:C_jacchus3.2.1:7:1:155834243:1	73967060	73982687	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004639}  [Source:UniProtKB/TrEMBL;Acc:F6YLM0]
ENSCJAG00000002556	KNOWN_BY_PROJECTION	protein_coding	HEYL	chromosome:C_jacchus3.2.1:7:1:155834243:1	74057578	74075197	R	hes-related family bHLH transcription factor with YRPW motif-like [Source:HGNC Symbol;Acc:HGNC:4882]
ENSCJAG00000002566	KNOWN_BY_PROJECTION	protein_coding	NT5C1A	chromosome:C_jacchus3.2.1:7:1:155834243:1	74099002	74211623	R	5'-nucleotidase, cytosolic IA [Source:HGNC Symbol;Acc:HGNC:17819]
ENSCJAG00000004426	KNOWN_BY_PROJECTION	protein_coding	CACNA1E	chromosome:C_jacchus3.2.1:18:1:47448759:1	24208549	24555744	R	calcium channel, voltage-dependent, R type, alpha 1E subunit [Source:HGNC Symbol;Acc:HGNC:1392]
ENSCJAG00000002578	KNOWN_BY_PROJECTION	protein_coding	HPCAL4	chromosome:C_jacchus3.2.1:7:1:155834243:1	74124375	74134528	R	hippocalcin like 4 [Source:HGNC Symbol;Acc:HGNC:18212]
ENSCJAG00000034433	NOVEL	protein_coding	ENSCJAG00000034433	chromosome:C_jacchus3.2.1:4:1:171630274:1	141526138	141527577	D	Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}  [Source:UniProtKB/TrEMBL;Acc:F7E4X3]
ENSCJAG00000019122	KNOWN_BY_PROJECTION	protein_coding	NMBR	chromosome:C_jacchus3.2.1:4:1:171630274:1	142755424	142770868	R	neuromedin B receptor [Source:HGNC Symbol;Acc:HGNC:7843]
ENSCJAG00000019131	KNOWN	protein_coding	VTA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	142838637	142906210	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035530}; Vacuolar protein sorting-associated protein VTA1 homolog {ECO:0000313|EMBL:JAB02517.1}  [Source:UniProtKB/TrEMBL;Acc:F7I3Z5]
ENSCJAG00000002589	KNOWN	protein_coding	PPIE	chromosome:C_jacchus3.2.1:7:1:155834243:1	74194701	74222603	D	Peptidyl-prolyl cis-trans isomerase E {ECO:0000256|PIRNR:PIRNR001475}  [Source:UniProtKB/TrEMBL;Acc:F7BMY0]
ENSCJAG00000002618	NOVEL	pseudogene	ENSCJAG00000002618	chromosome:C_jacchus3.2.1:7:1:155834243:1	74206382	74207265	R	<no descrition>
ENSCJAG00000019158	KNOWN_BY_PROJECTION	protein_coding	GPR126	chromosome:C_jacchus3.2.1:4:1:171630274:1	142989832	143140989	D	G protein-coupled receptor 126 [Source:HGNC Symbol;Acc:HGNC:13841]
ENSCJAG00000017967	NOVEL	pseudogene	ENSCJAG00000017967	chromosome:C_jacchus3.2.1:5:1:159171411:1	150902942	150903945	R	<no descrition>
ENSCJAG00000017903	KNOWN_BY_PROJECTION	protein_coding	UFM1	chromosome:C_jacchus3.2.1:5:1:159171411:1	151561649	151574749	D	ubiquitin-fold modifier 1 [Source:HGNC Symbol;Acc:HGNC:20597]
ENSCJAG00000017898	NOVEL	pseudogene	ENSCJAG00000017898	chromosome:C_jacchus3.2.1:5:1:159171411:1	151764045	151764919	D	<no descrition>
ENSCJAG00000002620	KNOWN_BY_PROJECTION	protein_coding	TRIT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	74326618	74371171	R	tRNA isopentenyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:20286]
ENSCJAG00000017883	KNOWN_BY_PROJECTION	protein_coding	FREM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	151945132	152138308	D	FRAS1 related extracellular matrix protein 2 [Source:HGNC Symbol;Acc:HGNC:25396]
ENSCJAG00000012693	KNOWN_BY_PROJECTION	protein_coding	PPP1R13L	chromosome:C_jacchus3.2.1:22:1:49145316:1	37447366	37459637	R	protein phosphatase 1, regulatory subunit 13 like [Source:HGNC Symbol;Acc:HGNC:18838]
ENSCJAG00000017876	KNOWN	protein_coding	STOML3	chromosome:C_jacchus3.2.1:5:1:159171411:1	152210362	152239359	R	Stomatin-like protein 3 isoform 1 {ECO:0000313|EMBL:JAB18790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032988}  [Source:UniProtKB/TrEMBL;Acc:F7G7E8]
ENSCJAG00000012689	KNOWN_BY_PROJECTION	protein_coding	CD3EAP	chromosome:C_jacchus3.2.1:22:1:49145316:1	37467488	37470529	D	CD3e molecule, epsilon associated protein [Source:HGNC Symbol;Acc:HGNC:24219]
ENSCJAG00000035280	NOVEL	pseudogene	ENSCJAG00000035280	chromosome:C_jacchus3.2.1:10:1:132174527:1	96392820	96393745	R	<no descrition>
ENSCJAG00000014658	NOVEL	protein_coding	ENSCJAG00000014658	chromosome:C_jacchus3.2.1:10:1:132174527:1	96474237	96474652	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026981}  [Source:UniProtKB/TrEMBL;Acc:F7IN24]
ENSCJAG00000012670	KNOWN_BY_PROJECTION	protein_coding	ERCC1	chromosome:C_jacchus3.2.1:22:1:49145316:1	37470453	37490188	R	excision repair cross-complementation group 1 [Source:HGNC Symbol;Acc:HGNC:3433]
ENSCJAG00000017859	KNOWN	protein_coding	PROSER1	chromosome:C_jacchus3.2.1:5:1:159171411:1	152252831	152281535	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032978}  [Source:UniProtKB/TrEMBL;Acc:F7G7T3]
ENSCJAG00000017851	KNOWN	protein_coding	NHLRC3	chromosome:C_jacchus3.2.1:5:1:159171411:1	152282535	152292480	D	NHL repeat-containing protein 3 isoform a {ECO:0000313|EMBL:JAB07555.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032942}  [Source:UniProtKB/TrEMBL;Acc:F7GQK6]
ENSCJAG00000002700	NOVEL	protein_coding	ENSCJAG00000002700	chromosome:C_jacchus3.2.1:7:1:155834243:1	74384690	74389234	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004912}  [Source:UniProtKB/TrEMBL;Acc:F6UZP7]
ENSCJAG00000009354	NOVEL	protein_coding	ENSCJAG00000009354	chromosome:C_jacchus3.2.1:5:1:159171411:1	152616847	152617473	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017140}  [Source:UniProtKB/TrEMBL;Acc:F7IF15]
ENSCJAG00000017833	KNOWN_BY_PROJECTION	protein_coding	COG6	chromosome:C_jacchus3.2.1:5:1:159171411:1	152875209	153014056	D	component of oligomeric golgi complex 6 [Source:HGNC Symbol;Acc:HGNC:18621]
ENSCJAG00000014597	KNOWN	protein_coding	SIPA1L1	chromosome:C_jacchus3.2.1:10:1:132174527:1	96633975	96937824	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026979}  [Source:UniProtKB/TrEMBL;Acc:F7IN43]
ENSCJAG00000002712	KNOWN_BY_PROJECTION	protein_coding	MFSD2A	chromosome:C_jacchus3.2.1:7:1:155834243:1	74443406	74457697	D	major facilitator superfamily domain containing 2A [Source:HGNC Symbol;Acc:HGNC:25897]
ENSCJAG00000004423	KNOWN	protein_coding	IER5	chromosome:C_jacchus3.2.1:18:1:47448759:1	24986035	24988405	R	Immediate early response gene 5 protein {ECO:0000313|EMBL:JAB06183.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044954}  [Source:UniProtKB/TrEMBL;Acc:F7G7P3]
ENSCJAG00000017829	NOVEL	protein_coding	ENSCJAG00000017829	chromosome:C_jacchus3.2.1:5:1:159171411:1	153753293	153754015	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032890}  [Source:UniProtKB/TrEMBL;Acc:F7HGH7]
ENSCJAG00000004391	KNOWN_BY_PROJECTION	protein_coding	MR1	chromosome:C_jacchus3.2.1:18:1:47448759:1	25015107	25031923	R	major histocompatibility complex, class I-related [Source:HGNC Symbol;Acc:HGNC:4975]
ENSCJAG00000012636	KNOWN	protein_coding	FOSB	chromosome:C_jacchus3.2.1:22:1:49145316:1	37533653	37538570	D	Protein fosB isoform 1 {ECO:0000313|EMBL:JAB10974.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023194}  [Source:UniProtKB/TrEMBL;Acc:F7HUM8]
ENSCJAG00000017816	KNOWN_BY_PROJECTION	protein_coding	FOXO1	chromosome:C_jacchus3.2.1:5:1:159171411:1	153799964	153906577	R	forkhead box O1 [Source:HGNC Symbol;Acc:HGNC:3819]
ENSCJAG00000017817	NOVEL	protein_coding	ENSCJAG00000017817	chromosome:C_jacchus3.2.1:5:1:159171411:1	153859394	153861637	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032882}  [Source:UniProtKB/TrEMBL;Acc:F7CYE6]
ENSCJAG00000012569	KNOWN_BY_PROJECTION	protein_coding	RTN2	chromosome:C_jacchus3.2.1:22:1:49145316:1	37550846	37564908	R	reticulon 2 [Source:HGNC Symbol;Acc:HGNC:10468]
ENSCJAG00000017805	KNOWN	protein_coding	MRPS31	chromosome:C_jacchus3.2.1:5:1:159171411:1	153970678	154011271	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049044}  [Source:UniProtKB/TrEMBL;Acc:F6XXS5]
ENSCJAG00000014594	NOVEL	pseudogene	ENSCJAG00000014594	chromosome:C_jacchus3.2.1:10:1:132174527:1	97189073	97190677	D	<no descrition>
ENSCJAG00000002738	KNOWN_BY_PROJECTION	protein_coding	CAP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	74524305	74603263	D	CAP, adenylate cyclase-associated protein 1 (yeast) [Source:HGNC Symbol;Acc:HGNC:20040]
ENSCJAG00000004356	KNOWN	protein_coding	STX6	chromosome:C_jacchus3.2.1:18:1:47448759:1	25042538	25087138	D	Syntaxin-6 {ECO:0000313|EMBL:JAB02845.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007945}  [Source:UniProtKB/TrEMBL;Acc:F6ZQT5]
ENSCJAG00000017797	NOVEL	protein_coding	ENSCJAG00000017797	chromosome:C_jacchus3.2.1:5:1:159171411:1	154036696	154058263	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032834}  [Source:UniProtKB/TrEMBL;Acc:F7EC28]
ENSCJAG00000004342	KNOWN_BY_PROJECTION	protein_coding	KIAA1614	chromosome:C_jacchus3.2.1:18:1:47448759:1	25114824	25148973	R	KIAA1614 [Source:HGNC Symbol;Acc:HGNC:29327]
ENSCJAG00000017791	NOVEL	protein_coding	ENSCJAG00000017791	chromosome:C_jacchus3.2.1:5:1:159171411:1	154054302	154134167	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042654}  [Source:UniProtKB/TrEMBL;Acc:F6ZP67]
ENSCJAG00000004339	KNOWN_BY_PROJECTION	protein_coding	SH2D1B	chromosome:C_jacchus3.2.1:18:1:47448759:1	25185812	25205283	R	SH2 domain containing 1B [Source:HGNC Symbol;Acc:HGNC:30416]
ENSCJAG00000004334	NOVEL	protein_coding	ENSCJAG00000004334	chromosome:C_jacchus3.2.1:18:1:47448759:1	25222622	25223703	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007836}  [Source:UniProtKB/TrEMBL;Acc:F7CNL2]
ENSCJAG00000014537	KNOWN_BY_PROJECTION	protein_coding	RGS6	chromosome:C_jacchus3.2.1:10:1:132174527:1	97590291	97804674	D	regulator of G-protein signaling 6 [Source:HGNC Symbol;Acc:HGNC:10002]
ENSCJAG00000002787	KNOWN	protein_coding	NCF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	74540605	74562213	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050038}  [Source:UniProtKB/TrEMBL;Acc:F7FDG1]
ENSCJAG00000004291	KNOWN	protein_coding	UHMK1	chromosome:C_jacchus3.2.1:18:1:47448759:1	25236168	25368017	D	Serine/threonine-protein kinase Kist isoform 1 {ECO:0000313|EMBL:JAB10338.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007808}  [Source:UniProtKB/TrEMBL;Acc:F6UL57]
ENSCJAG00000017214	NOVEL	protein_coding	ENSCJAG00000017214	chromosome:C_jacchus3.2.1:5:1:159171411:1	154055786	154063891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046095}  [Source:UniProtKB/TrEMBL;Acc:F6YU42]
ENSCJAG00000032529	NOVEL	pseudogene	ENSCJAG00000032529	chromosome:C_jacchus3.2.1:5:1:159171411:1	154126851	154127248	D	<no descrition>
ENSCJAG00000017782	KNOWN_BY_PROJECTION	protein_coding	ELF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	154220646	154302314	R	E74-like factor 1 (ets domain transcription factor) [Source:HGNC Symbol;Acc:HGNC:3316]
ENSCJAG00000012560	KNOWN_BY_PROJECTION	protein_coding	PPM1N	chromosome:C_jacchus3.2.1:22:1:49145316:1	37563606	37570995	D	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) [Source:HGNC Symbol;Acc:HGNC:26845]
ENSCJAG00000012536	NOVEL	protein_coding	ENSCJAG00000012536	chromosome:C_jacchus3.2.1:22:1:49145316:1	37588774	37598283	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022962}  [Source:UniProtKB/TrEMBL;Acc:F7I898]
ENSCJAG00000004264	KNOWN	protein_coding	UAP1	chromosome:C_jacchus3.2.1:18:1:47448759:1	25290416	25329236	D	UDP-N-acetylhexosamine pyrophosphorylase {ECO:0000313|EMBL:JAB10060.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007752}  [Source:UniProtKB/TrEMBL;Acc:F6XJW0]
ENSCJAG00000002797	KNOWN	protein_coding	GTF2IRD2B	chromosome:C_jacchus3.2.1:7:1:155834243:1	74569973	74580008	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005077}  [Source:UniProtKB/TrEMBL;Acc:F7HSV6]
ENSCJAG00000012530	KNOWN	protein_coding	OPA3	chromosome:C_jacchus3.2.1:22:1:49145316:1	37600173	37670471	R	Optic atrophy 3 protein isoform a {ECO:0000313|EMBL:JAB38899.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022936}  [Source:UniProtKB/TrEMBL;Acc:F7IF97]
ENSCJAG00000017779	NOVEL	protein_coding	ENSCJAG00000017779	chromosome:C_jacchus3.2.1:5:1:159171411:1	154272512	154273036	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032787}  [Source:UniProtKB/TrEMBL;Acc:F7FW53]
ENSCJAG00000002798	KNOWN_BY_PROJECTION	protein_coding	PPT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	74603333	74635422	R	palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]
ENSCJAG00000017768	KNOWN	protein_coding	WBP4	chromosome:C_jacchus3.2.1:5:1:159171411:1	154326418	154346724	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042035}; WW domain-binding protein 4 {ECO:0000313|EMBL:JAB06657.1}  [Source:UniProtKB/TrEMBL;Acc:F6RTA5]
ENSCJAG00000012469	KNOWN_BY_PROJECTION	protein_coding	EML2	chromosome:C_jacchus3.2.1:22:1:49145316:1	37676712	37714874	R	echinoderm microtubule associated protein like 2 [Source:HGNC Symbol;Acc:HGNC:18035]
ENSCJAG00000002821	KNOWN_BY_PROJECTION	protein_coding	RLF	chromosome:C_jacchus3.2.1:7:1:155834243:1	74691985	74787485	D	rearranged L-myc fusion [Source:HGNC Symbol;Acc:HGNC:10025]
ENSCJAG00000002830	KNOWN_BY_PROJECTION	protein_coding	TMCO2	chromosome:C_jacchus3.2.1:7:1:155834243:1	74795460	74799903	D	transmembrane and coiled-coil domains 2 [Source:HGNC Symbol;Acc:HGNC:23312]
ENSCJAG00000002833	KNOWN	protein_coding	ZMPSTE24	chromosome:C_jacchus3.2.1:7:1:155834243:1	74807218	74860243	D	CAAX prenyl protease 1 homolog {ECO:0000313|EMBL:JAB05824.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005168}  [Source:UniProtKB/TrEMBL;Acc:F7IF20]
ENSCJAG00000002851	KNOWN_BY_PROJECTION	protein_coding	COL9A2	chromosome:C_jacchus3.2.1:7:1:155834243:1	74869304	74885927	R	collagen, type IX, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2218]
ENSCJAG00000012422	KNOWN_BY_PROJECTION	protein_coding	GIPR	chromosome:C_jacchus3.2.1:22:1:49145316:1	37729682	37741839	D	gastric inhibitory polypeptide receptor [Source:HGNC Symbol;Acc:HGNC:4271]
ENSCJAG00000004221	KNOWN	protein_coding	DDR2	chromosome:C_jacchus3.2.1:18:1:47448759:1	25366596	25521885	D	Discoidin domain-containing receptor 2 {ECO:0000313|EMBL:JAB10770.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007708}  [Source:UniProtKB/TrEMBL;Acc:F6Y8M9]
ENSCJAG00000019190	KNOWN_BY_PROJECTION	protein_coding	HIVEP2	chromosome:C_jacchus3.2.1:4:1:171630274:1	143461535	143653646	R	human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
ENSCJAG00000017764	KNOWN_BY_PROJECTION	protein_coding	KBTBD6	chromosome:C_jacchus3.2.1:5:1:159171411:1	154387962	154391227	R	kelch repeat and BTB (POZ) domain containing 6 [Source:HGNC Symbol;Acc:HGNC:25340]
ENSCJAG00000019215	KNOWN_BY_PROJECTION	protein_coding	AIG1	chromosome:C_jacchus3.2.1:4:1:171630274:1	143762714	144017876	D	androgen-induced 1 [Source:HGNC Symbol;Acc:HGNC:21607]
ENSCJAG00000002908	KNOWN	protein_coding	SMAP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	74930202	74980798	D	Stromal membrane-associated protein 2 isoform 1 {ECO:0000313|EMBL:JAB04334.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005324}  [Source:UniProtKB/TrEMBL;Acc:F7ILV5]
ENSCJAG00000012413	NOVEL	protein_coding	ENSCJAG00000012413	chromosome:C_jacchus3.2.1:22:1:49145316:1	37746789	37755035	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022732}  [Source:UniProtKB/TrEMBL;Acc:F7ID35]
ENSCJAG00000017739	KNOWN	protein_coding	MTRF1	chromosome:C_jacchus3.2.1:5:1:159171411:1	154401800	154479548	R	Callithrix jacchus mitochondrial translational release factor 1 (MTRF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001270912]
ENSCJAG00000012382	KNOWN_BY_PROJECTION	protein_coding	QPCTL	chromosome:C_jacchus3.2.1:22:1:49145316:1	37754919	37769280	D	glutaminyl-peptide cyclotransferase-like [Source:HGNC Symbol;Acc:HGNC:25952]
ENSCJAG00000019222	KNOWN_BY_PROJECTION	protein_coding	ADAT2	chromosome:C_jacchus3.2.1:4:1:171630274:1	144111323	144122006	R	adenosine deaminase, tRNA-specific 2 [Source:HGNC Symbol;Acc:HGNC:21172]
ENSCJAG00000017761	KNOWN_BY_PROJECTION	protein_coding	KBTBD7	chromosome:C_jacchus3.2.1:5:1:159171411:1	154430491	154433533	R	kelch repeat and BTB (POZ) domain containing 7 [Source:HGNC Symbol;Acc:HGNC:25266]
ENSCJAG00000002952	KNOWN_BY_PROJECTION	protein_coding	ZFP69B	chromosome:C_jacchus3.2.1:7:1:155834243:1	75007261	75020635	D	ZFP69 zinc finger protein B [Source:HGNC Symbol;Acc:HGNC:28053]
ENSCJAG00000019230	KNOWN	protein_coding	PEX3	chromosome:C_jacchus3.2.1:4:1:171630274:1	144136987	144172320	D	Peroxisomal biogenesis factor 3 {ECO:0000313|EMBL:JAB01741.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035721}  [Source:UniProtKB/TrEMBL;Acc:F7FME1]
ENSCJAG00000002953	KNOWN_BY_PROJECTION	protein_coding	ZFP69	chromosome:C_jacchus3.2.1:7:1:155834243:1	75037030	75060924	D	ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:24708]
ENSCJAG00000002961	KNOWN	protein_coding	EXO5	chromosome:C_jacchus3.2.1:7:1:155834243:1	75072195	75079683	D	Putative exonuclease V {ECO:0000313|EMBL:JAB06912.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045905}  [Source:UniProtKB/TrEMBL;Acc:F6TP17]
ENSCJAG00000002965	KNOWN	protein_coding	ZNF684	chromosome:C_jacchus3.2.1:7:1:155834243:1	75096141	75106862	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005371}; Zinc finger protein 684 {ECO:0000313|EMBL:JAB09261.1}  [Source:UniProtKB/TrEMBL;Acc:F7ICH6]
ENSCJAG00000017696	KNOWN	protein_coding	NAA16	chromosome:C_jacchus3.2.1:5:1:159171411:1	154534193	154593001	D	N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform 1 {ECO:0000313|EMBL:JAB27869.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032707}  [Source:UniProtKB/TrEMBL;Acc:F7H667]
ENSCJAG00000002973	KNOWN	protein_coding	RIMS3	chromosome:C_jacchus3.2.1:7:1:155834243:1	75153727	75194554	R	Regulating synaptic membrane exocytosis protein 3 {ECO:0000313|EMBL:JAB21947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005390}  [Source:UniProtKB/TrEMBL;Acc:F7IA49]
ENSCJAG00000012379	KNOWN	protein_coding	FBXO46	chromosome:C_jacchus3.2.1:22:1:49145316:1	37776911	37780056	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022666}  [Source:UniProtKB/TrEMBL;Acc:F7IS96]
ENSCJAG00000034519	KNOWN_BY_PROJECTION	protein_coding	BHMG1	chromosome:C_jacchus3.2.1:22:1:49145316:1	37807870	37830243	D	basic helix-loop-helix and HMG box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:44318]
ENSCJAG00000002987	NOVEL	protein_coding	ENSCJAG00000002987	chromosome:C_jacchus3.2.1:7:1:155834243:1	75266261	75299343	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005408}  [Source:UniProtKB/TrEMBL;Acc:F7I310]
ENSCJAG00000012372	KNOWN	protein_coding	SIX5	chromosome:C_jacchus3.2.1:22:1:49145316:1	37833544	37837970	R	Homeobox protein SIX5 {ECO:0000313|EMBL:JAB08669.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022656}  [Source:UniProtKB/TrEMBL;Acc:F7HN28]
ENSCJAG00000002997	KNOWN_BY_PROJECTION	protein_coding	KCNQ4	chromosome:C_jacchus3.2.1:7:1:155834243:1	75347071	75369904	D	potassium channel, voltage gated KQT-like subfamily Q, member 4 [Source:HGNC Symbol;Acc:HGNC:6298]
ENSCJAG00000003001	NOVEL	pseudogene	ENSCJAG00000003001	chromosome:C_jacchus3.2.1:7:1:155834243:1	75394654	75395944	R	<no descrition>
ENSCJAG00000004176	KNOWN_BY_PROJECTION	protein_coding	HSD17B7	chromosome:C_jacchus3.2.1:18:1:47448759:1	25532600	25560585	D	hydroxysteroid (17-beta) dehydrogenase 7 [Source:HGNC Symbol;Acc:HGNC:5215]
ENSCJAG00000012303	KNOWN	protein_coding	DMPK	chromosome:C_jacchus3.2.1:22:1:49145316:1	37838451	37850105	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022589}  [Source:UniProtKB/TrEMBL;Acc:F7I625]
ENSCJAG00000003003	KNOWN	protein_coding	CTPS1	chromosome:C_jacchus3.2.1:7:1:155834243:1	75521511	75559319	D	CTP synthase {ECO:0000256|RuleBase:RU810713}  [Source:UniProtKB/TrEMBL;Acc:F7HS43]
ENSCJAG00000017692	KNOWN	protein_coding	RGCC	chromosome:C_jacchus3.2.1:5:1:159171411:1	154633823	154645953	D	Regulator of cell cycle RGCC {ECO:0000313|EMBL:JAB02054.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032607}  [Source:UniProtKB/TrEMBL;Acc:F7ERM4]
ENSCJAG00000017682	KNOWN_BY_PROJECTION	protein_coding	VWA8	chromosome:C_jacchus3.2.1:5:1:159171411:1	154728039	155067243	R	von Willebrand factor A domain containing 8 [Source:HGNC Symbol;Acc:HGNC:29071]
ENSCJAG00000014522	KNOWN_BY_PROJECTION	protein_coding	DPF3	chromosome:C_jacchus3.2.1:10:1:132174527:1	97865157	98145772	R	D4, zinc and double PHD fingers, family 3 [Source:HGNC Symbol;Acc:HGNC:17427]
ENSCJAG00000014514	NOVEL	protein_coding	ENSCJAG00000014514	chromosome:C_jacchus3.2.1:10:1:132174527:1	98248074	98249736	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026704}  [Source:UniProtKB/TrEMBL;Acc:F7INB5]
ENSCJAG00000004163	KNOWN_BY_PROJECTION	protein_coding	C1orf110	chromosome:C_jacchus3.2.1:18:1:47448759:1	25592099	25601335	R	chromosome 1 open reading frame 110 [Source:HGNC Symbol;Acc:HGNC:28736]
ENSCJAG00000014498	KNOWN_BY_PROJECTION	protein_coding	ZFYVE1	chromosome:C_jacchus3.2.1:10:1:132174527:1	98261631	98318148	R	zinc finger, FYVE domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13180]
ENSCJAG00000003039	KNOWN_BY_PROJECTION	protein_coding	SCMH1	chromosome:C_jacchus3.2.1:7:1:155834243:1	75522929	75743709	R	sex comb on midleg homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19003]
ENSCJAG00000004123	KNOWN	protein_coding	RGS4	chromosome:C_jacchus3.2.1:18:1:47448759:1	25798566	25804756	D	Regulator of G-protein signaling 4 isoform 1 {ECO:0000313|EMBL:JAB15696.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007549}  [Source:UniProtKB/TrEMBL;Acc:F6RJK3]
ENSCJAG00000019246	KNOWN	protein_coding	FUCA2	chromosome:C_jacchus3.2.1:4:1:171630274:1	144176593	144193494	R	Plasma alpha-L-fucosidase {ECO:0000313|EMBL:JAB03955.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035787}  [Source:UniProtKB/TrEMBL;Acc:F7E3H0]
ENSCJAG00000004095	KNOWN	protein_coding	RGS5	chromosome:C_jacchus3.2.1:18:1:47448759:1	25819582	25871085	R	Regulator of G-protein signaling 5 isoform 1 {ECO:0000313|EMBL:JAB21037.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007475}  [Source:UniProtKB/TrEMBL;Acc:F6TDR7]
ENSCJAG00000003028	KNOWN_BY_PROJECTION	protein_coding	SLFNL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	75562444	75567722	R	schlafen-like 1 [Source:HGNC Symbol;Acc:HGNC:26313]
ENSCJAG00000003070	KNOWN_BY_PROJECTION	protein_coding	FOXO6	chromosome:C_jacchus3.2.1:7:1:155834243:1	75929403	75957590	D	forkhead box O6 [Source:HGNC Symbol;Acc:HGNC:24814]
ENSCJAG00000012286	KNOWN_BY_PROJECTION	protein_coding	DMWD	chromosome:C_jacchus3.2.1:22:1:49145316:1	37851523	37860252	R	dystrophia myotonica, WD repeat containing [Source:HGNC Symbol;Acc:HGNC:2936]
ENSCJAG00000003074	KNOWN_BY_PROJECTION	protein_coding	EDN2	chromosome:C_jacchus3.2.1:7:1:155834243:1	76063663	76069262	R	endothelin 2 [Source:HGNC Symbol;Acc:HGNC:3177]
ENSCJAG00000017656	KNOWN_BY_PROJECTION	protein_coding	DGKH	chromosome:C_jacchus3.2.1:5:1:159171411:1	155295439	155409197	D	diacylglycerol kinase, eta [Source:HGNC Symbol;Acc:HGNC:2854]
ENSCJAG00000031115	NOVEL	protein_coding	ENSCJAG00000031115	chromosome:C_jacchus3.2.1:7:1:155834243:1	76614402	76615485	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044634}  [Source:UniProtKB/TrEMBL;Acc:F7D0T0]
ENSCJAG00000003087	KNOWN_BY_PROJECTION	protein_coding	GUCA2A	chromosome:C_jacchus3.2.1:7:1:155834243:1	76769205	76771251	R	guanylate cyclase activator 2A (guanylin) [Source:HGNC Symbol;Acc:HGNC:4682]
ENSCJAG00000003088	KNOWN	protein_coding	FOXJ3	chromosome:C_jacchus3.2.1:7:1:155834243:1	76787145	76971423	R	Forkhead box protein J3 isoform 1 {ECO:0000313|EMBL:JAB07312.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005625}  [Source:UniProtKB/TrEMBL;Acc:F7I2W5]
ENSCJAG00000014441	KNOWN	protein_coding	RBM25	chromosome:C_jacchus3.2.1:10:1:132174527:1	98346343	98408871	D	RNA-binding protein 25 {ECO:0000313|EMBL:JAB11726.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026646}  [Source:UniProtKB/TrEMBL;Acc:F7HXF2]
ENSCJAG00000003106	KNOWN	protein_coding	RIMKLA	chromosome:C_jacchus3.2.1:7:1:155834243:1	77016902	77054878	D	N-acetylaspartyl-glutamate synthetase A {ECO:0000313|EMBL:JAB30032.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005644}  [Source:UniProtKB/TrEMBL;Acc:F7I0K3]
ENSCJAG00000004050	KNOWN_BY_PROJECTION	protein_coding	NUF2	chromosome:C_jacchus3.2.1:18:1:47448759:1	25978567	26012197	D	NUF2, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:14621]
ENSCJAG00000003111	KNOWN	protein_coding	ZMYND12	chromosome:C_jacchus3.2.1:7:1:155834243:1	77074807	77129592	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005671}; Zinc finger MYND domain-containing protein 12 isoform 1 {ECO:0000313|EMBL:JAB21606.1}  [Source:UniProtKB/TrEMBL;Acc:F7HVU5]
ENSCJAG00000012268	KNOWN_BY_PROJECTION	protein_coding	RSPH6A	chromosome:C_jacchus3.2.1:22:1:49145316:1	37863931	37883279	R	radial spoke head 6 homolog A (Chlamydomonas) [Source:HGNC Symbol;Acc:HGNC:14241]
ENSCJAG00000003121	KNOWN_BY_PROJECTION	protein_coding	PPCS	chromosome:C_jacchus3.2.1:7:1:155834243:1	77129824	77133929	D	phosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]
ENSCJAG00000017644	KNOWN_BY_PROJECTION	protein_coding	AKAP11	chromosome:C_jacchus3.2.1:5:1:159171411:1	155450101	155502352	D	A kinase (PRKA) anchor protein 11 [Source:HGNC Symbol;Acc:HGNC:369]
ENSCJAG00000017638	NOVEL	protein_coding	ENSCJAG00000017638	chromosome:C_jacchus3.2.1:5:1:159171411:1	155578768	155579226	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032496}  [Source:UniProtKB/TrEMBL;Acc:F7HBT3]
ENSCJAG00000003130	NOVEL	protein_coding	ENSCJAG00000003130	chromosome:C_jacchus3.2.1:7:1:155834243:1	77150749	77168419	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005689}  [Source:UniProtKB/TrEMBL;Acc:F7HRR3]
ENSCJAG00000007868	NOVEL	protein_coding	ENSCJAG00000007868	chromosome:C_jacchus3.2.1:18:1:47448759:1	26246930	26247643	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052399}  [Source:UniProtKB/TrEMBL;Acc:F7ILA9]
ENSCJAG00000034730	NOVEL	protein_coding	ENSCJAG00000034730	chromosome:C_jacchus3.2.1:7:1:155834243:1	77162294	77163060	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051113}  [Source:UniProtKB/TrEMBL;Acc:F6ZL10]
ENSCJAG00000012172	KNOWN	protein_coding	SYMPK	chromosome:C_jacchus3.2.1:22:1:49145316:1	37883534	37965264	R	Symplekin {ECO:0000313|EMBL:JAB03926.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022472}  [Source:UniProtKB/TrEMBL;Acc:F7IQ05]
ENSCJAG00000003131	KNOWN_BY_PROJECTION	protein_coding	CCDC30	chromosome:C_jacchus3.2.1:7:1:155834243:1	77203635	77383469	D	coiled-coil domain containing 30 [Source:HGNC Symbol;Acc:HGNC:26103]
ENSCJAG00000017622	KNOWN_BY_PROJECTION	protein_coding	TNFSF11	chromosome:C_jacchus3.2.1:5:1:159171411:1	155750247	155793054	D	tumor necrosis factor (ligand) superfamily, member 11 [Source:HGNC Symbol;Acc:HGNC:11926]
ENSCJAG00000003145	KNOWN	protein_coding	PPIH	chromosome:C_jacchus3.2.1:7:1:155834243:1	77324845	77351341	D	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7IPE9]
ENSCJAG00000007895	KNOWN	protein_coding	XPR1	chromosome:C_jacchus3.2.1:18:1:47448759:1	26271440	26507608	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014699}; Xenotropic and polytropic retrovirus receptor 1 isoform 1 {ECO:0000313|EMBL:JAB07421.1}  [Source:UniProtKB/TrEMBL;Acc:F7HPX8]
ENSCJAG00000019286	KNOWN	protein_coding	PHACTR2	chromosome:C_jacchus3.2.1:4:1:171630274:1	144297583	144506132	D	Phosphatase and actin regulator {ECO:0000256|RuleBase:RU301113}  [Source:UniProtKB/TrEMBL;Acc:F7HI80]
ENSCJAG00000017615	KNOWN_BY_PROJECTION	protein_coding	FAM216B	chromosome:C_jacchus3.2.1:5:1:159171411:1	155975068	155981902	D	family with sequence similarity 216, member B [Source:HGNC Symbol;Acc:HGNC:26883]
ENSCJAG00000017594	KNOWN_BY_PROJECTION	protein_coding	EPSTI1	chromosome:C_jacchus3.2.1:5:1:159171411:1	156091672	156197378	R	epithelial stromal interaction 1 (breast) [Source:HGNC Symbol;Acc:HGNC:16465]
ENSCJAG00000007953	KNOWN_BY_PROJECTION	protein_coding	LHX4-AS1	chromosome:C_jacchus3.2.1:18:1:47448759:1	26641445	26840094	D	LHX4 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40982]
ENSCJAG00000007973	KNOWN_BY_PROJECTION	protein_coding	LHX4	chromosome:C_jacchus3.2.1:18:1:47448759:1	26853524	26896570	R	LIM homeobox 4 [Source:HGNC Symbol;Acc:HGNC:21734]
ENSCJAG00000014387	KNOWN	protein_coding	PSEN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	98420622	98508917	D	Presenilin {ECO:0000256|RuleBase:RU361148}  [Source:UniProtKB/TrEMBL;Acc:F7IGD5]
ENSCJAG00000003155	NOVEL	protein_coding	ENSCJAG00000003155	chromosome:C_jacchus3.2.1:7:1:155834243:1	77356147	77381121	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050763}  [Source:UniProtKB/TrEMBL;Acc:F7HIR4]
ENSCJAG00000017589	KNOWN_BY_PROJECTION	protein_coding	DNAJC15	chromosome:C_jacchus3.2.1:5:1:159171411:1	156232335	156313593	D	DnaJ (Hsp40) homolog, subfamily C, member 15 [Source:HGNC Symbol;Acc:HGNC:20325]
ENSCJAG00000012163	KNOWN_BY_PROJECTION	protein_coding	FOXA3	chromosome:C_jacchus3.2.1:22:1:49145316:1	37927006	37936376	D	forkhead box A3 [Source:HGNC Symbol;Acc:HGNC:5023]
ENSCJAG00000035112	NOVEL	pseudogene	ENSCJAG00000035112	chromosome:C_jacchus3.2.1:22:1:49145316:1	37936824	37937187	R	<no descrition>
ENSCJAG00000036087	KNOWN_BY_PROJECTION	protein_coding	MYPOP	chromosome:C_jacchus3.2.1:22:1:49145316:1	37953678	37966093	R	Myb-related transcription factor, partner of profilin [Source:HGNC Symbol;Acc:HGNC:20178]
ENSCJAG00000012141	NOVEL	pseudogene	ENSCJAG00000012141	chromosome:C_jacchus3.2.1:22:1:49145316:1	37981939	37982355	R	<no descrition>
ENSCJAG00000017557	KNOWN	protein_coding	ENOX1	chromosome:C_jacchus3.2.1:5:1:159171411:1	156428234	157063380	R	Ecto-NOX disulfide-thiol exchanger 1 {ECO:0000313|EMBL:JAB15004.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032396}  [Source:UniProtKB/TrEMBL;Acc:F7FIX3]
ENSCJAG00000033245	NOVEL	pseudogene	ENSCJAG00000033245	chromosome:C_jacchus3.2.1:22:1:49145316:1	37984226	37984777	R	<no descrition>
ENSCJAG00000012121	KNOWN_BY_PROJECTION	protein_coding	NOVA2	chromosome:C_jacchus3.2.1:22:1:49145316:1	38012254	38036138	R	neuro-oncological ventral antigen 2 [Source:HGNC Symbol;Acc:HGNC:7887]
ENSCJAG00000019295	NOVEL	protein_coding	ENSCJAG00000019295	chromosome:C_jacchus3.2.1:4:1:171630274:1	144522339	144536873	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035834}  [Source:UniProtKB/TrEMBL;Acc:F7H7Q1]
ENSCJAG00000012104	KNOWN_BY_PROJECTION	protein_coding	CCDC61	chromosome:C_jacchus3.2.1:22:1:49145316:1	38065040	38093065	D	coiled-coil domain containing 61 [Source:HGNC Symbol;Acc:HGNC:33629]
ENSCJAG00000007966	KNOWN_BY_PROJECTION	protein_coding	QSOX1	chromosome:C_jacchus3.2.1:18:1:47448759:1	26934654	26963481	R	quiescin Q6 sulfhydryl oxidase 1 [Source:HGNC Symbol;Acc:HGNC:9756]
ENSCJAG00000003200	KNOWN_BY_PROJECTION	protein_coding	CLDN19	chromosome:C_jacchus3.2.1:7:1:155834243:1	77412230	77419290	R	claudin 19 [Source:HGNC Symbol;Acc:HGNC:2040]
ENSCJAG00000012095	KNOWN_BY_PROJECTION	protein_coding	PGLYRP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	38093710	38097999	R	peptidoglycan recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:8904]
ENSCJAG00000008014	KNOWN	protein_coding	CEP350	chromosome:C_jacchus3.2.1:18:1:47448759:1	27012959	27171100	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014922}  [Source:UniProtKB/TrEMBL;Acc:F7HX75]
ENSCJAG00000019308	KNOWN	protein_coding	PLAGL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	144527104	144736071	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046121}; Zinc finger protein PLAGL1 isoform 2 {ECO:0000313|EMBL:JAB06932.1}  [Source:UniProtKB/TrEMBL;Acc:F6X0L1]
ENSCJAG00000017551	KNOWN_BY_PROJECTION	protein_coding	CCDC122	chromosome:C_jacchus3.2.1:5:1:159171411:1	157115381	157143678	R	coiled-coil domain containing 122 [Source:HGNC Symbol;Acc:HGNC:26478]
ENSCJAG00000012086	NOVEL	protein_coding	ENSCJAG00000012086	chromosome:C_jacchus3.2.1:22:1:49145316:1	38118106	38119550	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022190}  [Source:UniProtKB/TrEMBL;Acc:F6VVK6]
ENSCJAG00000017549	NOVEL	protein_coding	ENSCJAG00000017549	chromosome:C_jacchus3.2.1:5:1:159171411:1	157156347	157176398	D	<no descrition>
ENSCJAG00000012083	NOVEL	protein_coding	ENSCJAG00000012083	chromosome:C_jacchus3.2.1:22:1:49145316:1	38136497	38137536	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022171}  [Source:UniProtKB/TrEMBL;Acc:F6WFB7]
ENSCJAG00000003216	KNOWN	protein_coding	LEPRE1	chromosome:C_jacchus3.2.1:7:1:155834243:1	77426341	77446984	R	Prolyl 3-hydroxylase 1 isoform 1 {ECO:0000313|EMBL:JAB07361.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005896}  [Source:UniProtKB/TrEMBL;Acc:F7IRA2]
ENSCJAG00000019808	KNOWN	protein_coding	TSC22D1	chromosome:C_jacchus3.2.1:5:1:159171411:1	157774775	157922283	R	TSC22 domain family protein 1 isoform 2 {ECO:0000313|EMBL:JAB07809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036846}  [Source:UniProtKB/TrEMBL;Acc:F6TA11]
ENSCJAG00000019195	KNOWN_BY_PROJECTION	protein_coding	NUFIP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	158285754	158332260	R	nuclear fragile X mental retardation protein interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:8057]
ENSCJAG00000007992	KNOWN	protein_coding	TOR1AIP1	chromosome:C_jacchus3.2.1:18:1:47448759:1	27201288	27235544	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014796}  [Source:UniProtKB/TrEMBL;Acc:F7IG66]
ENSCJAG00000012019	KNOWN_BY_PROJECTION	protein_coding	HIF3A	chromosome:C_jacchus3.2.1:22:1:49145316:1	38242048	38287334	D	hypoxia inducible factor 3, alpha subunit [Source:HGNC Symbol;Acc:HGNC:15825]
ENSCJAG00000019204	KNOWN	protein_coding	GPALPP1	chromosome:C_jacchus3.2.1:5:1:159171411:1	158332339	158374032	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035678}; Uncharacterized protein KIAA1704 {ECO:0000313|EMBL:JAB06161.1}  [Source:UniProtKB/TrEMBL;Acc:F7GSH1]
ENSCJAG00000003243	KNOWN	protein_coding	C1ORF50	chromosome:C_jacchus3.2.1:7:1:155834243:1	77447148	77470345	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005911}; Uncharacterized protein C1orf50 {ECO:0000313|EMBL:JAB07504.1}  [Source:UniProtKB/TrEMBL;Acc:F7IGR7]
ENSCJAG00000019220	KNOWN	protein_coding	GTF2F2	chromosome:C_jacchus3.2.1:5:1:159171411:1	158469048	158636983	D	General transcription factor IIF subunit 2 {ECO:0000313|EMBL:JAB04209.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035693}  [Source:UniProtKB/TrEMBL;Acc:F7GSA9]
ENSCJAG00000003249	KNOWN_BY_PROJECTION	protein_coding	CCDC23	chromosome:C_jacchus3.2.1:7:1:155834243:1	77481640	77490560	R	coiled-coil domain containing 23 [Source:HGNC Symbol;Acc:HGNC:29204]
ENSCJAG00000019227	KNOWN	protein_coding	KCTD4	chromosome:C_jacchus3.2.1:5:1:159171411:1	158549242	158557446	R	BTB/POZ domain-containing protein KCTD4 {ECO:0000313|EMBL:JAB11932.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035694}  [Source:UniProtKB/TrEMBL;Acc:F7GSA7]
ENSCJAG00000019229	NOVEL	protein_coding	ENSCJAG00000019229	chromosome:C_jacchus3.2.1:5:1:159171411:1	158683798	158687923	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035708}  [Source:UniProtKB/TrEMBL;Acc:F7GC12]
ENSCJAG00000003251	KNOWN_BY_PROJECTION	protein_coding	ERMAP	chromosome:C_jacchus3.2.1:7:1:155834243:1	77490384	77533344	D	erythroblast membrane-associated protein (Scianna blood group) [Source:HGNC Symbol;Acc:HGNC:15743]
ENSCJAG00000008086	KNOWN	protein_coding	TOR1AIP2	chromosome:C_jacchus3.2.1:18:1:47448759:1	27239617	27272096	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014931}  [Source:UniProtKB/TrEMBL;Acc:F7HUV7]
ENSCJAG00000008093	KNOWN	protein_coding	FAM163A	chromosome:C_jacchus3.2.1:18:1:47448759:1	27291303	27363687	R	Protein FAM163A {ECO:0000313|EMBL:JAB14673.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045448}  [Source:UniProtKB/TrEMBL;Acc:F6QFU4]
ENSCJAG00000037767	NOVEL	pseudogene	ENSCJAG00000037767	chromosome:C_jacchus3.2.1:7:1:155834243:1	77532046	77533339	D	<no descrition>
ENSCJAG00000003267	KNOWN_BY_PROJECTION	protein_coding	ZNF691	chromosome:C_jacchus3.2.1:7:1:155834243:1	77537262	77543192	D	zinc finger protein 691 [Source:HGNC Symbol;Acc:HGNC:28028]
ENSCJAG00000019240	NOVEL	pseudogene	ENSCJAG00000019240	chromosome:C_jacchus3.2.1:5:1:159171411:1	158733455	158734090	R	<no descrition>
ENSCJAG00000003275	NOVEL	pseudogene	ENSCJAG00000003275	chromosome:C_jacchus3.2.1:7:1:155834243:1	77568835	77569471	R	<no descrition>
ENSCJAG00000014352	KNOWN_BY_PROJECTION	protein_coding	PAPLN	chromosome:C_jacchus3.2.1:10:1:132174527:1	98530847	98578216	D	papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
ENSCJAG00000019241	KNOWN_BY_PROJECTION	protein_coding	SLC25A30	chromosome:C_jacchus3.2.1:5:1:159171411:1	158753340	158771817	D	solute carrier family 25, member 30 [Source:HGNC Symbol;Acc:HGNC:27371]
ENSCJAG00000003279	KNOWN	protein_coding	SLC2A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	77600309	77636171	R	Solute carrier family 2, facilitated glucose transporter member 1 {ECO:0000313|EMBL:JAB04270.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000825}  [Source:UniProtKB/TrEMBL;Acc:F6PYB0]
ENSCJAG00000019307	KNOWN_BY_PROJECTION	protein_coding	ZC2HC1B	chromosome:C_jacchus3.2.1:4:1:171630274:1	144537540	144597560	D	zinc finger, C2HC-type containing 1B [Source:HGNC Symbol;Acc:HGNC:21174]
ENSCJAG00000008098	KNOWN_BY_PROJECTION	protein_coding	TDRD5	chromosome:C_jacchus3.2.1:18:1:47448759:1	27420192	27500118	R	tudor domain containing 5 [Source:HGNC Symbol;Acc:HGNC:20614]
ENSCJAG00000031883	NOVEL	protein_coding	ENSCJAG00000031883	chromosome:C_jacchus3.2.1:7:1:155834243:1	77822536	77825146	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048932}  [Source:UniProtKB/TrEMBL;Acc:F6QID4]
ENSCJAG00000003315	KNOWN	protein_coding	FAM183A	chromosome:C_jacchus3.2.1:7:1:155834243:1	77869381	77878627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006016}  [Source:UniProtKB/TrEMBL;Acc:F7H6Z4]
ENSCJAG00000003318	KNOWN_BY_PROJECTION	protein_coding	EBNA1BP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	77884705	77893264	R	EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
ENSCJAG00000019251	KNOWN_BY_PROJECTION	protein_coding	COG3	chromosome:C_jacchus3.2.1:5:1:159171411:1	158790837	158856314	D	component of oligomeric golgi complex 3 [Source:HGNC Symbol;Acc:HGNC:18619]
ENSCJAG00000008137	KNOWN_BY_PROJECTION	protein_coding	NPHS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	27513093	27531844	D	nephrosis 2, idiopathic, steroid-resistant (podocin) [Source:HGNC Symbol;Acc:HGNC:13394]
ENSCJAG00000014264	KNOWN_BY_PROJECTION	protein_coding	NUMB	chromosome:C_jacchus3.2.1:10:1:132174527:1	98580314	98752012	R	numb homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:8060]
ENSCJAG00000003341	NOVEL	protein_coding	ENSCJAG00000003341	chromosome:C_jacchus3.2.1:7:1:155834243:1	77893304	77947257	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006072}  [Source:UniProtKB/TrEMBL;Acc:F7GKM5]
ENSCJAG00000038103	NOVEL	protein_coding	ENSCJAG00000038103	chromosome:C_jacchus3.2.1:7:1:155834243:1	77963187	77978987	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052369}  [Source:UniProtKB/TrEMBL;Acc:F7INQ4]
ENSCJAG00000031900	KNOWN_BY_PROJECTION	protein_coding	ERICH6B	chromosome:C_jacchus3.2.1:5:1:159171411:1	158872429	158913662	R	glutamate-rich 6B [Source:HGNC Symbol;Acc:HGNC:26523]
ENSCJAG00000003348	KNOWN	protein_coding	TMEM125	chromosome:C_jacchus3.2.1:7:1:155834243:1	77992787	77996718	D	Transmembrane protein 125 {ECO:0000313|EMBL:JAB05954.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006074}  [Source:UniProtKB/TrEMBL;Acc:F7GKL3]
ENSCJAG00000003350	KNOWN	protein_coding	C1ORF210	chromosome:C_jacchus3.2.1:7:1:155834243:1	78001246	78004945	R	Uncharacterized protein {ECO:0000313|EMBL:JAB03977.1, ECO:0000313|Ensembl:ENSCJAP00000006076}  [Source:UniProtKB/TrEMBL;Acc:F7GKK3]
ENSCJAG00000003352	NOVEL	protein_coding	ENSCJAG00000003352	chromosome:C_jacchus3.2.1:7:1:155834243:1	78012264	78013998	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006077}  [Source:UniProtKB/TrEMBL;Acc:F7GKK0]
ENSCJAG00000008147	KNOWN_BY_PROJECTION	protein_coding	AXDND1	chromosome:C_jacchus3.2.1:18:1:47448759:1	27527861	27662260	R	axonemal dynein light chain domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26564]
ENSCJAG00000019317	KNOWN_BY_PROJECTION	protein_coding	SPERT	chromosome:C_jacchus3.2.1:5:1:159171411:1	159021327	159034664	D	spermatid associated [Source:HGNC Symbol;Acc:HGNC:30720]
ENSCJAG00000033707	NOVEL	protein_coding	ENSCJAG00000033707	scaffold:C_jacchus3.2.1:ACFV01182912.1:1:11899:1	802	1551	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017131}  [Source:UniProtKB/TrEMBL;Acc:H9KWL2]
ENSCJAG00000031755	NOVEL	pseudogene	ENSCJAG00000031755	scaffold:C_jacchus3.2.1:GL284739.1:1:122480:1	57089	57380	D	<no descrition>
ENSCJAG00000002434	NOVEL	pseudogene	ENSCJAG00000002434	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	672549	673252	R	<no descrition>
ENSCJAG00000002435	NOVEL	pseudogene	ENSCJAG00000002435	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	673752	675584	R	<no descrition>
ENSCJAG00000011891	KNOWN	protein_coding	PPP5C	chromosome:C_jacchus3.2.1:22:1:49145316:1	38293577	38332469	D	Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}  [Source:UniProtKB/TrEMBL;Acc:F7AU33]
ENSCJAG00000003353	KNOWN_BY_PROJECTION	protein_coding	TIE1	chromosome:C_jacchus3.2.1:7:1:155834243:1	78022064	78044599	D	tyrosine kinase with immunoglobulin-like and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:11809]
ENSCJAG00000002440	KNOWN	protein_coding	NHP2L1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	680080	693220	D	NHP2-like protein 1 {ECO:0000313|EMBL:JAB03881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004447}  [Source:UniProtKB/TrEMBL;Acc:H9KVU2]
ENSCJAG00000009927	NOVEL	protein_coding	ENSCJAG00000009927	scaffold:C_jacchus3.2.1:ACFV01180200.1:1:15070:1	2249	5270	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018219}  [Source:UniProtKB/TrEMBL;Acc:H9KWM6]
ENSCJAG00000011316	NOVEL	protein_coding	ENSCJAG00000011316	scaffold:C_jacchus3.2.1:ACFV01196625.1:1:2288:1	360	1200	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020829}  [Source:UniProtKB/TrEMBL;Acc:H9KWT7]
ENSCJAG00000006587	KNOWN	protein_coding	MAG	scaffold:C_jacchus3.2.1:GL285908.1:1:24792:1	9580	13058	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012177}  [Source:UniProtKB/TrEMBL;Acc:H9KWC3]
ENSCJAG00000032154	NOVEL	protein_coding	ENSCJAG00000032154	scaffold:C_jacchus3.2.1:GL285070.1:1:17169:1	109	720	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041245}  [Source:UniProtKB/TrEMBL;Acc:H9KXT4]
ENSCJAG00000019312	KNOWN_BY_PROJECTION	protein_coding	STX11	chromosome:C_jacchus3.2.1:4:1:171630274:1	144855742	144856644	D	syntaxin 11 [Source:HGNC Symbol;Acc:HGNC:11429]
ENSCJAG00000032070	NOVEL	protein_coding	ENSCJAG00000032070	scaffold:C_jacchus3.2.1:ACFV01193612.1:1:3619:1	2423	2785	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048486}  [Source:UniProtKB/TrEMBL;Acc:F7H8D2]
ENSCJAG00000021721	NOVEL	protein_coding	ENSCJAG00000021721	scaffold:C_jacchus3.2.1:ACFV01202397.1:1:2449:1	1735	2220	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040433}  [Source:UniProtKB/TrEMBL;Acc:H9KXP3]
ENSCJAG00000032493	NOVEL	protein_coding	ENSCJAG00000032493	scaffold:C_jacchus3.2.1:ACFV01176946.1:1:39311:1	24572	25222	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047746}  [Source:UniProtKB/TrEMBL;Acc:H9KYA4]
ENSCJAG00000008191	NOVEL	pseudogene	ENSCJAG00000008191	chromosome:C_jacchus3.2.1:18:1:47448759:1	27617457	27618085	R	<no descrition>
ENSCJAG00000035104	NOVEL	protein_coding	ENSCJAG00000035104	scaffold:C_jacchus3.2.1:GL286362.1:1:23456:1	16609	16911	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041036}  [Source:UniProtKB/TrEMBL;Acc:H9KXS5]
ENSCJAG00000013618	NOVEL	protein_coding	ENSCJAG00000013618	scaffold:C_jacchus3.2.1:ACFV01193108.1:1:3857:1	291	431	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051312}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ1]
ENSCJAG00000019315	KNOWN_BY_PROJECTION	protein_coding	UTRN	chromosome:C_jacchus3.2.1:4:1:171630274:1	144969189	145555594	D	utrophin [Source:HGNC Symbol;Acc:HGNC:12635]
ENSCJAG00000003389	KNOWN_BY_PROJECTION	protein_coding	MPL	chromosome:C_jacchus3.2.1:7:1:155834243:1	78058090	78073055	D	MPL proto-oncogene, thrombopoietin receptor [Source:HGNC Symbol;Acc:HGNC:7217]
ENSCJAG00000008194	KNOWN	protein_coding	SOAT1	chromosome:C_jacchus3.2.1:18:1:47448759:1	27669527	27742351	R	O-acyltransferase {ECO:0000256|PIRNR:PIRNR000439}  [Source:UniProtKB/TrEMBL;Acc:F6VEA6]
ENSCJAG00000033285	NOVEL	pseudogene	ENSCJAG00000033285	chromosome:C_jacchus3.2.1:22:1:49145316:1	38337582	38337733	R	<no descrition>
ENSCJAG00000011888	NOVEL	pseudogene	ENSCJAG00000011888	chromosome:C_jacchus3.2.1:22:1:49145316:1	38359593	38361185	R	<no descrition>
ENSCJAG00000011875	KNOWN	protein_coding	PNMAL2	chromosome:C_jacchus3.2.1:22:1:49145316:1	38436435	38441170	R	PNMA-like protein 2 {ECO:0000313|EMBL:JAB27952.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021811}  [Source:UniProtKB/TrEMBL;Acc:F6S5D6]
ENSCJAG00000011741	KNOWN	protein_coding	FKRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	38461156	38668803	D	Fukutin-related protein {ECO:0000313|EMBL:JAB06709.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021568}  [Source:UniProtKB/TrEMBL;Acc:F6TG30]
ENSCJAG00000011866	NOVEL	pseudogene	ENSCJAG00000011866	chromosome:C_jacchus3.2.1:22:1:49145316:1	38500463	38501466	D	<no descrition>
ENSCJAG00000011855	KNOWN	protein_coding	ENSCJAG00000011855	chromosome:C_jacchus3.2.1:22:1:49145316:1	38540289	38540548	D	Calmodulin-like protein {ECO:0000313|EMBL:ABQ22823.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021769}  [Source:UniProtKB/TrEMBL;Acc:A6ML82]
ENSCJAG00000003414	KNOWN	protein_coding	CDC20	chromosome:C_jacchus3.2.1:7:1:155834243:1	78079274	78083422	D	Cell division cycle protein 20 homolog {ECO:0000313|EMBL:JAB06377.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006284}  [Source:UniProtKB/TrEMBL;Acc:F7G9N7]
ENSCJAG00000011850	KNOWN_BY_PROJECTION	protein_coding	PTGIR	chromosome:C_jacchus3.2.1:22:1:49145316:1	38552369	38555925	R	prostaglandin I2 (prostacyclin) receptor (IP) [Source:HGNC Symbol;Acc:HGNC:9602]
ENSCJAG00000011841	KNOWN_BY_PROJECTION	protein_coding	GNG8	chromosome:C_jacchus3.2.1:22:1:49145316:1	38569557	38573153	R	guanine nucleotide binding protein (G protein), gamma 8 [Source:HGNC Symbol;Acc:HGNC:19664]
ENSCJAG00000018743	NOVEL	protein_coding	ENSCJAG00000018743	chromosome:C_jacchus3.2.1:4:1:171630274:1	145047909	145048376	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044238}  [Source:UniProtKB/TrEMBL;Acc:F7E0S4]
ENSCJAG00000034510	NOVEL	protein_coding	ENSCJAG00000034510	scaffold:C_jacchus3.2.1:ACFV01183876.1:1:8916:1	1401	1685	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047797}  [Source:UniProtKB/TrEMBL;Acc:H9KYA7]
ENSCJAG00000011828	KNOWN	protein_coding	DACT3	chromosome:C_jacchus3.2.1:22:1:49145316:1	38589642	38603495	R	Dapper homolog 3 {ECO:0000313|EMBL:JAB10939.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021720}  [Source:UniProtKB/TrEMBL;Acc:F6PHE1]
ENSCJAG00000021755	NOVEL	protein_coding	ENSCJAG00000021755	scaffold:C_jacchus3.2.1:GL285278.1:1:27867:1	26358	26801	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040460}  [Source:UniProtKB/TrEMBL;Acc:H9KXP5]
ENSCJAG00000031325	NOVEL	protein_coding	ENSCJAG00000031325	scaffold:C_jacchus3.2.1:ACFV01179607.1:1:17507:1	11884	12156	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041763}  [Source:UniProtKB/TrEMBL;Acc:H9KXW9]
ENSCJAG00000031954	NOVEL	protein_coding	ENSCJAG00000031954	scaffold:C_jacchus3.2.1:GL285941.1:1:31081:1	16206	16367	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049470}  [Source:UniProtKB/TrEMBL;Acc:H9KYE4]
ENSCJAG00000022710	KNOWN_BY_PROJECTION	protein_coding	CHRAC1	scaffold:C_jacchus3.2.1:GL286262.1:1:54285:1	19556	19960	R	chromatin accessibility complex 1 [Source:HGNC Symbol;Acc:HGNC:13544]
ENSCJAG00000022709	NOVEL	protein_coding	ENSCJAG00000022709	scaffold:C_jacchus3.2.1:GL284942.1:1:123787:1	60972	62420	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041302}  [Source:UniProtKB/TrEMBL;Acc:H9KXT6]
ENSCJAG00000023310	KNOWN	protein_coding	GPRASP1	scaffold:C_jacchus3.2.1:GL286019.1:1:38952:1	132	5546	D	G-protein coupled receptor-associated sorting protein 1 {ECO:0000313|EMBL:JAB08707.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041816}  [Source:UniProtKB/TrEMBL;Acc:H9KXX2]
ENSCJAG00000019389	KNOWN	protein_coding	EPM2A	chromosome:C_jacchus3.2.1:4:1:171630274:1	146322395	146413444	R	Laforin isoform a {ECO:0000313|EMBL:JAB02795.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048506}  [Source:UniProtKB/TrEMBL;Acc:F7GDH7]
ENSCJAG00000000355	NOVEL	protein_coding	ENSCJAG00000000355	scaffold:C_jacchus3.2.1:GL284744.1:1:12263:1	4507	4801	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000592}  [Source:UniProtKB/TrEMBL;Acc:H9KVK6]
ENSCJAG00000004937	NOVEL	protein_coding	ENSCJAG00000004937	scaffold:C_jacchus3.2.1:GL284738.1:1:83425:1	5332	6255	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009012}  [Source:UniProtKB/TrEMBL;Acc:H9KW52]
ENSCJAG00000023240	NOVEL	protein_coding	ENSCJAG00000023240	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	517717	518043	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041754}  [Source:UniProtKB/TrEMBL;Acc:H9KXW6]
ENSCJAG00000022056	NOVEL	protein_coding	ENSCJAG00000022056	scaffold:C_jacchus3.2.1:ACFV01184603.1:1:11918:1	443	951	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040720}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ9]
ENSCJAG00000033518	NOVEL	protein_coding	ENSCJAG00000033518	scaffold:C_jacchus3.2.1:GL286406.1:1:12374:1	9805	10191	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050005}  [Source:UniProtKB/TrEMBL;Acc:H9KYF8]
ENSCJAG00000011814	KNOWN_BY_PROJECTION	protein_coding	PRKD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	38612000	38627550	R	protein kinase D2 [Source:HGNC Symbol;Acc:HGNC:17293]
ENSCJAG00000022076	NOVEL	protein_coding	ENSCJAG00000022076	scaffold:C_jacchus3.2.1:ACFV01196750.1:1:4333:1	763	1710	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040740}  [Source:UniProtKB/TrEMBL;Acc:H9KXR0]
ENSCJAG00000021819	KNOWN	protein_coding	ENSCJAG00000021819	scaffold:C_jacchus3.2.1:GL286439.1:1:356043:1	125001	125225	D	Cat eye syndrome critical region protein 5-like protein {ECO:0000313|EMBL:ABQ22621.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040520}  [Source:UniProtKB/TrEMBL;Acc:A6MKN0]
ENSCJAG00000000206	NOVEL	protein_coding	ENSCJAG00000000206	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	154512	155702	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044552}  [Source:UniProtKB/TrEMBL;Acc:H9KY29]
ENSCJAG00000032837	NOVEL	protein_coding	ENSCJAG00000032837	scaffold:C_jacchus3.2.1:ACFV01190291.1:1:5485:1	2176	2523	D	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:H9KY90]
ENSCJAG00000034581	NOVEL	protein_coding	ENSCJAG00000034581	chromosome:C_jacchus3.2.1:10:1:132174527:1	98766085	98766660	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038546}  [Source:UniProtKB/TrEMBL;Acc:F7IBK0]
ENSCJAG00000031903	NOVEL	protein_coding	ENSCJAG00000031903	scaffold:C_jacchus3.2.1:GL285820.1:1:36901:1	3437	3889	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047141}  [Source:UniProtKB/TrEMBL;Acc:H9KY82]
ENSCJAG00000013202	NOVEL	protein_coding	ENSCJAG00000013202	scaffold:C_jacchus3.2.1:GL286423.1:1:10118:1	5339	5500	D	<no descrition>
ENSCJAG00000015360	NOVEL	protein_coding	ENSCJAG00000015360	scaffold:C_jacchus3.2.1:GL285631.1:1:144671:1	77304	77483	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022461}  [Source:UniProtKB/TrEMBL;Acc:H9KWX0]
ENSCJAG00000023408	KNOWN_BY_PROJECTION	protein_coding	DUX4	scaffold:C_jacchus3.2.1:GL285944.1:1:21153:1	2663	3232	D	double homeobox 4 [Source:HGNC Symbol;Acc:HGNC:50800]
ENSCJAG00000009908	KNOWN_BY_PROJECTION	protein_coding	HEATR4	chromosome:C_jacchus3.2.1:10:1:132174527:1	98774558	98821695	R	HEAT repeat containing 4 [Source:HGNC Symbol;Acc:HGNC:16761]
ENSCJAG00000003702	NOVEL	protein_coding	ENSCJAG00000003702	scaffold:C_jacchus3.2.1:ACFV01177559.1:1:29430:1	12061	13026	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KW20]
ENSCJAG00000034478	NOVEL	protein_coding	ENSCJAG00000034478	scaffold:C_jacchus3.2.1:GL289564.1:1:8648:1	289	591	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041881}  [Source:UniProtKB/TrEMBL;Acc:H9KXX6]
ENSCJAG00000022982	NOVEL	protein_coding	COR52P3	scaffold:C_jacchus3.2.1:GL285524.1:1:34899:1	20327	21283	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KXV3]
ENSCJAG00000023445	NOVEL	protein_coding	ENSCJAG00000023445	scaffold:C_jacchus3.2.1:ACFV01200957.1:1:2047:1	1439	1873	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041938}  [Source:UniProtKB/TrEMBL;Acc:H9KXX9]
ENSCJAG00000031562	NOVEL	protein_coding	ENSCJAG00000031562	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	815191	815463	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052342}  [Source:UniProtKB/TrEMBL;Acc:H9KYM6]
ENSCJAG00000003469	KNOWN	protein_coding	ELOVL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	78083611	78088589	R	Elongation of very long chain fatty acids protein {ECO:0000256|RuleBase:RU361115}  [Source:UniProtKB/TrEMBL;Acc:F7ER80]
ENSCJAG00000034630	KNOWN_BY_PROJECTION	protein_coding	RPL39	scaffold:C_jacchus3.2.1:ACFV01180874.1:1:16834:1	14376	14531	R	ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
ENSCJAG00000011749	KNOWN_BY_PROJECTION	protein_coding	STRN4	chromosome:C_jacchus3.2.1:22:1:49145316:1	38629776	38649108	R	striatin, calmodulin binding protein 4 [Source:HGNC Symbol;Acc:HGNC:15721]
ENSCJAG00000012728	NOVEL	protein_coding	ENSCJAG00000012728	scaffold:C_jacchus3.2.1:GL285010.1:1:22969:1	10450	11370	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049955}  [Source:UniProtKB/TrEMBL;Acc:H9KYF6]
ENSCJAG00000023323	NOVEL	protein_coding	ENSCJAG00000023323	scaffold:C_jacchus3.2.1:ACFV01202310.1:1:2033:1	759	1157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041829}  [Source:UniProtKB/TrEMBL;Acc:H9KXX4]
ENSCJAG00000023035	NOVEL	protein_coding	ENSCJAG00000023035	scaffold:C_jacchus3.2.1:ACFV01190905.1:1:4832:1	1880	3560	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041581}  [Source:UniProtKB/TrEMBL;Acc:H9KXV7]
ENSCJAG00000023239	NOVEL	protein_coding	ENSCJAG00000023239	scaffold:C_jacchus3.2.1:ACFV01199400.1:1:2342:1	425	1753	D	<no descrition>
ENSCJAG00000023036	NOVEL	protein_coding	ENSCJAG00000023036	chromosome:C_jacchus3.2.1:18:1:47448759:1	27790389	27791289	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041582}  [Source:UniProtKB/TrEMBL;Acc:F7F1V3]
ENSCJAG00000007731	NOVEL	pseudogene	ENSCJAG00000007731	chromosome:C_jacchus3.2.1:10:1:132174527:1	98782647	98785049	D	<no descrition>
ENSCJAG00000022465	KNOWN_BY_PROJECTION	protein_coding	RBMS1	scaffold:C_jacchus3.2.1:GL290413.1:1:9956:1	9218	9595	R	RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
ENSCJAG00000008287	NOVEL	protein_coding	ENSCJAG00000008287	chromosome:C_jacchus3.2.1:18:1:47448759:1	27803429	27803804	D	40S ribosomal protein S12 {ECO:0000256|RuleBase:RU000670}  [Source:UniProtKB/TrEMBL;Acc:F7FTK0]
ENSCJAG00000031849	NOVEL	protein_coding	ENSCJAG00000031849	chromosome:C_jacchus3.2.1:10:1:132174527:1	98813839	98814938	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033125}  [Source:UniProtKB/TrEMBL;Acc:F6SWR3]
ENSCJAG00000023179	NOVEL	protein_coding	ENSCJAG00000023179	scaffold:C_jacchus3.2.1:ACFV01201468.1:1:2013:1	98	391	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041701}  [Source:UniProtKB/TrEMBL;Acc:H9KXW1]
ENSCJAG00000000565	NOVEL	protein_coding	ENSCJAG00000000565	scaffold:C_jacchus3.2.1:GL284737.1:1:8706:1	7246	8181	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049115}  [Source:UniProtKB/TrEMBL;Acc:H9KYD3]
ENSCJAG00000018734	KNOWN_BY_PROJECTION	protein_coding	C17orf97	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	212298	212672	R	chromosome 17 open reading frame 97 [Source:HGNC Symbol;Acc:HGNC:33800]
ENSCJAG00000009911	KNOWN_BY_PROJECTION	protein_coding	ACOT4	chromosome:C_jacchus3.2.1:10:1:132174527:1	98832004	98854608	D	acyl-CoA thioesterase 4 [Source:HGNC Symbol;Acc:HGNC:19748]
ENSCJAG00000003499	KNOWN_BY_PROJECTION	protein_coding	MED8	chromosome:C_jacchus3.2.1:7:1:155834243:1	78108524	78112519	R	mediator complex subunit 8 [Source:HGNC Symbol;Acc:HGNC:19971]
ENSCJAG00000011717	KNOWN_BY_PROJECTION	protein_coding	SLC1A5	chromosome:C_jacchus3.2.1:22:1:49145316:1	38683377	38697096	R	solute carrier family 1 (neutral amino acid transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:10943]
ENSCJAG00000008288	KNOWN_BY_PROJECTION	protein_coding	ABL2	chromosome:C_jacchus3.2.1:18:1:47448759:1	27811629	27938845	D	ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
ENSCJAG00000019390	KNOWN	protein_coding	FBXO30	chromosome:C_jacchus3.2.1:4:1:171630274:1	146473067	146489344	R	F-box only protein 30 {ECO:0000313|EMBL:JAB29567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036006}  [Source:UniProtKB/TrEMBL;Acc:F7GYT1]
ENSCJAG00000003517	NOVEL	protein_coding	ENSCJAG00000003517	chromosome:C_jacchus3.2.1:7:1:155834243:1	78113989	78131677	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006378}  [Source:UniProtKB/TrEMBL;Acc:F7DYU8]
ENSCJAG00000011710	KNOWN_BY_PROJECTION	protein_coding	AP2S1	chromosome:C_jacchus3.2.1:22:1:49145316:1	38750570	38751614	R	adaptor-related protein complex 2, sigma 1 subunit [Source:HGNC Symbol;Acc:HGNC:565]
ENSCJAG00000022643	NOVEL	processed_pseudogene	ENSCJAG00000022643	scaffold:C_jacchus3.2.1:GL284974.1:1:28730:1	1589	3598	D	<no descrition>
ENSCJAG00000022804	NOVEL	processed_pseudogene	ENSCJAG00000022804	scaffold:C_jacchus3.2.1:GL286730.1:1:9906:1	110	1078	R	<no descrition>
ENSCJAG00000019395	KNOWN_BY_PROJECTION	protein_coding	SHPRH	chromosome:C_jacchus3.2.1:4:1:171630274:1	146553859	146639906	R	SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:19336]
ENSCJAG00000003519	NOVEL	protein_coding	ENSCJAG00000003519	chromosome:C_jacchus3.2.1:7:1:155834243:1	78145977	78174315	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006425}  [Source:UniProtKB/TrEMBL;Acc:F7H6D1]
ENSCJAG00000033248	NOVEL	processed_pseudogene	ENSCJAG00000033248	scaffold:C_jacchus3.2.1:GL284730.1:1:14984:1	6558	7328	D	<no descrition>
ENSCJAG00000021974	NOVEL	processed_pseudogene	ENSCJAG00000021974	scaffold:C_jacchus3.2.1:GL288687.1:1:15427:1	3184	4573	R	<no descrition>
ENSCJAG00000032478	NOVEL	processed_pseudogene	ENSCJAG00000032478	scaffold:C_jacchus3.2.1:GL285907.1:1:79621:1	35742	36014	D	<no descrition>
ENSCJAG00000005902	KNOWN_BY_PROJECTION	protein_coding	PLET1	scaffold:C_jacchus3.2.1:GL285485.1:1:21465:1	61	273	R	placenta expressed transcript 1 [Source:HGNC Symbol;Acc:HGNC:30053]
ENSCJAG00000005646	KNOWN	protein_coding	LPAR2	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	401018	401761	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010317}  [Source:UniProtKB/TrEMBL;Acc:H9KW90]
ENSCJAG00000023007	NOVEL	protein_coding	ENSCJAG00000023007	scaffold:C_jacchus3.2.1:ACFV01195733.1:1:3144:1	693	2945	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041553}  [Source:UniProtKB/TrEMBL;Acc:H9KXV4]
ENSCJAG00000031760	NOVEL	protein_coding	ENSCJAG00000031760	scaffold:C_jacchus3.2.1:ACFV01190073.1:1:2966:1	753	1160	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ1]
ENSCJAG00000031221	NOVEL	protein_coding	ENSCJAG00000031221	scaffold:C_jacchus3.2.1:ACFV01181930.1:1:10539:1	2457	3008	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041250}  [Source:UniProtKB/TrEMBL;Acc:H9KXT5]
ENSCJAG00000032162	KNOWN_BY_PROJECTION	protein_coding	ST13	scaffold:C_jacchus3.2.1:GL288565.1:1:27563:1	20405	20689	D	suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:HGNC:11343]
ENSCJAG00000022230	KNOWN	protein_coding	ENSCJAG00000022230	scaffold:C_jacchus3.2.1:GL286537.1:1:27551:1	21575	21730	R	60S ribosomal protein L39 {ECO:0000313|EMBL:JAB24083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009150}  [Source:UniProtKB/TrEMBL;Acc:F7IQ68]
ENSCJAG00000011987	NOVEL	protein_coding	ENSCJAG00000011987	scaffold:C_jacchus3.2.1:GL286243.1:1:84412:1	65978	67406	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022015}  [Source:UniProtKB/TrEMBL;Acc:H9KWV7]
ENSCJAG00000023454	NOVEL	protein_coding	ENSCJAG00000023454	scaffold:C_jacchus3.2.1:ACFV01178791.1:1:18427:1	987	1352	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052136}  [Source:UniProtKB/TrEMBL;Acc:H9KYL8]
ENSCJAG00000011701	KNOWN	protein_coding	ARHGAP35	chromosome:C_jacchus3.2.1:22:1:49145316:1	38834363	38916915	D	Rho GTPase-activating protein 35 {ECO:0000313|EMBL:JAB12863.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021489}  [Source:UniProtKB/TrEMBL;Acc:F6QR29]
ENSCJAG00000023407	KNOWN_BY_PROJECTION	protein_coding	OR6C70	scaffold:C_jacchus3.2.1:GL285364.1:1:36672:1	12892	13830	R	olfactory receptor, family 6, subfamily C, member 70 [Source:HGNC Symbol;Acc:HGNC:31299]
ENSCJAG00000003560	KNOWN	protein_coding	HYI	chromosome:C_jacchus3.2.1:7:1:155834243:1	78174477	78177199	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006481}  [Source:UniProtKB/TrEMBL;Acc:F7GJK2]
ENSCJAG00000015158	NOVEL	protein_coding	ENSCJAG00000015158	scaffold:C_jacchus3.2.1:GL286223.1:1:132061:1	86041	86490	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027938}  [Source:UniProtKB/TrEMBL;Acc:H9KX36]
ENSCJAG00000022738	NOVEL	protein_coding	ENSCJAG00000022738	scaffold:C_jacchus3.2.1:GL284722.1:1:19520:1	2416	3284	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041331}  [Source:UniProtKB/TrEMBL;Acc:H9KXU0]
ENSCJAG00000011666	KNOWN	protein_coding	NPAS1	chromosome:C_jacchus3.2.1:22:1:49145316:1	38933810	38959583	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021478}  [Source:UniProtKB/TrEMBL;Acc:F6R0C1]
ENSCJAG00000023019	NOVEL	protein_coding	ENSCJAG00000023019	scaffold:C_jacchus3.2.1:GL285937.1:1:15190:1	13640	14104	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041565}  [Source:UniProtKB/TrEMBL;Acc:H9KXV6]
ENSCJAG00000032437	NOVEL	protein_coding	ENSCJAG00000032437	scaffold:C_jacchus3.2.1:ACFV01182053.1:1:11106:1	5025	5576	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041531}  [Source:UniProtKB/TrEMBL;Acc:H9KXV2]
ENSCJAG00000021975	NOVEL	protein_coding	ENSCJAG00000021975	scaffold:C_jacchus3.2.1:GL286732.1:1:11357:1	949	1332	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040654}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ8]
ENSCJAG00000022806	NOVEL	protein_coding	ENSCJAG00000022806	scaffold:C_jacchus3.2.1:GL285106.1:1:44946:1	21641	22657	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041387}  [Source:UniProtKB/TrEMBL;Acc:H9KXU3]
ENSCJAG00000022137	KNOWN	protein_coding	A4GALT	scaffold:C_jacchus3.2.1:GL289209.1:1:9138:1	7156	8217	R	Lactosylceramide 4-alpha-galactosyltransferase {ECO:0000313|EMBL:JAB02273.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040796}  [Source:UniProtKB/TrEMBL;Acc:H9KXR3]
ENSCJAG00000022828	KNOWN_BY_PROJECTION	protein_coding	OR4D10	scaffold:C_jacchus3.2.1:GL285512.1:1:140942:1	131561	132588	D	olfactory receptor, family 4, subfamily D, member 10 [Source:HGNC Symbol;Acc:HGNC:15173]
ENSCJAG00000008360	NOVEL	protein_coding	ENSCJAG00000008360	chromosome:C_jacchus3.2.1:18:1:47448759:1	27859318	27860060	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015388}  [Source:UniProtKB/TrEMBL;Acc:F7HFI4]
ENSCJAG00000011650	KNOWN	protein_coding	TMEM160	chromosome:C_jacchus3.2.1:22:1:49145316:1	38959705	38963030	R	Transmembrane protein 160 {ECO:0000313|EMBL:JAB20418.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021414}  [Source:UniProtKB/TrEMBL;Acc:F6S8X9]
ENSCJAG00000022829	KNOWN_BY_PROJECTION	protein_coding	OR4D6	scaffold:C_jacchus3.2.1:GL285512.1:1:140942:1	112931	113984	D	olfactory receptor, family 4, subfamily D, member 6 [Source:HGNC Symbol;Acc:HGNC:15175]
ENSCJAG00000022830	KNOWN_BY_PROJECTION	protein_coding	OR5A1	scaffold:C_jacchus3.2.1:GL285512.1:1:140942:1	96188	97237	D	olfactory receptor, family 5, subfamily A, member 1 [Source:HGNC Symbol;Acc:HGNC:8319]
ENSCJAG00000008365	NOVEL	protein_coding	ENSCJAG00000008365	chromosome:C_jacchus3.2.1:18:1:47448759:1	27881675	27882048	R	40S ribosomal protein S12 {ECO:0000256|RuleBase:RU000670}  [Source:UniProtKB/TrEMBL;Acc:F7HFD8]
ENSCJAG00000037095	KNOWN_BY_PROJECTION	protein_coding	ACOT6	chromosome:C_jacchus3.2.1:10:1:132174527:1	98866429	98873050	D	acyl-CoA thioesterase 6 [Source:HGNC Symbol;Acc:HGNC:33159]
ENSCJAG00000008366	KNOWN_BY_PROJECTION	protein_coding	TOR3A	chromosome:C_jacchus3.2.1:18:1:47448759:1	27952387	27965318	R	torsin family 3, member A [Source:HGNC Symbol;Acc:HGNC:11997]
ENSCJAG00000034789	NOVEL	protein_coding	ENSCJAG00000034789	scaffold:C_jacchus3.2.1:GL290917.1:1:5285:1	909	1094	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050181}  [Source:UniProtKB/TrEMBL;Acc:H9KYG3]
ENSCJAG00000011601	KNOWN_BY_PROJECTION	protein_coding	ZC3H4	chromosome:C_jacchus3.2.1:22:1:49145316:1	38976699	39022275	R	zinc finger CCCH-type containing 4 [Source:HGNC Symbol;Acc:HGNC:17808]
ENSCJAG00000018834	KNOWN	protein_coding	TMEM11	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1040071	1040967	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034972}  [Source:UniProtKB/TrEMBL;Acc:H9KXG1]
ENSCJAG00000008371	KNOWN	protein_coding	FAM20B	chromosome:C_jacchus3.2.1:18:1:47448759:1	27974771	28004683	R	Glycosaminoglycan xylosylkinase {ECO:0000313|EMBL:JAB02997.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015424}  [Source:UniProtKB/TrEMBL;Acc:F7GZP6]
ENSCJAG00000022392	KNOWN_BY_PROJECTION	protein_coding	IGHV3-48	scaffold:C_jacchus3.2.1:ACFV01182565.1:1:14755:1	9696	10043	D	immunoglobulin heavy variable 3-48 [Source:HGNC Symbol;Acc:HGNC:5606]
ENSCJAG00000009922	KNOWN	protein_coding	DNAL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	98895175	98932555	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018229}  [Source:UniProtKB/TrEMBL;Acc:F7GW85]
ENSCJAG00000003612	KNOWN	protein_coding	MPST	scaffold:C_jacchus3.2.1:GL284751.1:1:8327:1	7192	7785	D	Sulfurtransferase {ECO:0000256|RuleBase:RU000507}  [Source:UniProtKB/TrEMBL;Acc:H9KW12]
ENSCJAG00000022173	NOVEL	protein_coding	ENSCJAG00000022173	scaffold:C_jacchus3.2.1:ACFV01190921.1:1:3168:1	897	1514	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040829}  [Source:UniProtKB/TrEMBL;Acc:H9KXR5]
ENSCJAG00000032603	NOVEL	protein_coding	ENSCJAG00000032603	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	944299	944529	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004875}  [Source:UniProtKB/TrEMBL;Acc:H9KVV2]
ENSCJAG00000034577	NOVEL	protein_coding	ENSCJAG00000034577	scaffold:C_jacchus3.2.1:ACFV01181108.1:1:19384:1	13627	13989	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041683}  [Source:UniProtKB/TrEMBL;Acc:H9KXV9]
ENSCJAG00000005650	KNOWN_BY_PROJECTION	protein_coding	CILP2	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	315713	317392	D	cartilage intermediate layer protein 2 [Source:HGNC Symbol;Acc:HGNC:24213]
ENSCJAG00000009935	KNOWN_BY_PROJECTION	protein_coding	ELMSAN1	chromosome:C_jacchus3.2.1:10:1:132174527:1	98949162	98991950	R	ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
ENSCJAG00000008385	KNOWN	protein_coding	RALGPS2	chromosome:C_jacchus3.2.1:18:1:47448759:1	28108235	28299730	R	Ras-specific guanine nucleotide-releasing factor RalGPS2 {ECO:0000313|EMBL:JAB11361.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015509}  [Source:UniProtKB/TrEMBL;Acc:F7F0T3]
ENSCJAG00000011565	KNOWN	protein_coding	SAE1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39034937	39124106	D	SUMO-activating enzyme subunit 1 isoform a {ECO:0000313|EMBL:JAB11783.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021276}  [Source:UniProtKB/TrEMBL;Acc:F6QTB7]
ENSCJAG00000031557	NOVEL	protein_coding	ENSCJAG00000031557	scaffold:C_jacchus3.2.1:ACFV01195117.1:1:2658:1	972	1490	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049031}  [Source:UniProtKB/TrEMBL;Acc:H9KYD0]
ENSCJAG00000031265	NOVEL	protein_coding	ENSCJAG00000031265	scaffold:C_jacchus3.2.1:GL285518.1:1:30939:1	6240	6374	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047887}  [Source:UniProtKB/TrEMBL;Acc:H9KYA8]
ENSCJAG00000023012	KNOWN_BY_PROJECTION	protein_coding	PRR33	scaffold:C_jacchus3.2.1:GL285518.1:1:30939:1	2574	3980	D	proline rich 33 [Source:HGNC Symbol;Acc:HGNC:35118]
ENSCJAG00000022527	NOVEL	protein_coding	ENSCJAG00000022527	scaffold:C_jacchus3.2.1:GL285192.1:1:88693:1	62493	62906	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041134}  [Source:UniProtKB/TrEMBL;Acc:H9KXS9]
ENSCJAG00000002732	NOVEL	protein_coding	ENSCJAG00000002732	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1637851	1640208	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005013}  [Source:UniProtKB/TrEMBL;Acc:H9KVV9]
ENSCJAG00000023238	NOVEL	protein_coding	ENSCJAG00000023238	scaffold:C_jacchus3.2.1:GL285300.1:1:8452:1	7282	8277	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041752}  [Source:UniProtKB/TrEMBL;Acc:H9KXW4]
ENSCJAG00000035096	NOVEL	protein_coding	ENSCJAG00000035096	scaffold:C_jacchus3.2.1:GL285234.1:1:5239:1	1247	1468	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042765}  [Source:UniProtKB/TrEMBL;Acc:H9KXZ8]
ENSCJAG00000003373	NOVEL	protein_coding	ENSCJAG00000003373	chromosome:C_jacchus3.2.1:21:1:50472720:1	20914107	20914322	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006122}  [Source:UniProtKB/TrEMBL;Acc:F7F5G0]
ENSCJAG00000022871	NOVEL	protein_coding	ENSCJAG00000022871	chromosome:C_jacchus3.2.1:21:1:50472720:1	21358132	21358602	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041442}  [Source:UniProtKB/TrEMBL;Acc:F7HAN0]
ENSCJAG00000011505	KNOWN	protein_coding	PTGR2	chromosome:C_jacchus3.2.1:10:1:132174527:1	99093013	99137970	D	Prostaglandin reductase 2 {ECO:0000313|EMBL:JAB07586.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021155}  [Source:UniProtKB/TrEMBL;Acc:F6SLT2]
ENSCJAG00000022700	KNOWN_BY_PROJECTION	protein_coding	KRTAP24-1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34134677	34136301	R	keratin associated protein 24-1 [Source:HGNC Symbol;Acc:HGNC:33902]
ENSCJAG00000022702	NOVEL	protein_coding	ENSCJAG00000022702	chromosome:C_jacchus3.2.1:21:1:50472720:1	34235931	34236778	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041295}  [Source:UniProtKB/TrEMBL;Acc:F7H5Q1]
ENSCJAG00000022704	KNOWN_BY_PROJECTION	protein_coding	KRTAP8-1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34732540	34733101	R	keratin associated protein 8-1 [Source:HGNC Symbol;Acc:HGNC:18935]
ENSCJAG00000022605	KNOWN_BY_PROJECTION	protein_coding	KRTAP7-1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34756807	34757488	R	keratin associated protein 7-1 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:18934]
ENSCJAG00000022606	KNOWN_BY_PROJECTION	protein_coding	KRTAP11-1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34816853	34817314	R	keratin associated protein 11-1 [Source:HGNC Symbol;Acc:HGNC:18922]
ENSCJAG00000021874	NOVEL	processed_pseudogene	ENSCJAG00000021874	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	48097	48453	D	<no descrition>
ENSCJAG00000022653	NOVEL	processed_pseudogene	ENSCJAG00000022653	scaffold:C_jacchus3.2.1:GL284771.1:1:11054:1	1059	1400	R	<no descrition>
ENSCJAG00000023348	NOVEL	processed_pseudogene	ENSCJAG00000023348	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	52058	52504	R	<no descrition>
ENSCJAG00000003811	NOVEL	processed_pseudogene	ENSCJAG00000003811	scaffold:C_jacchus3.2.1:GL285287.1:1:13163:1	7289	8059	D	<no descrition>
ENSCJAG00000022834	KNOWN	protein_coding	TMEM91	scaffold:C_jacchus3.2.1:GL285911.1:1:7142:1	5956	6165	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041415}  [Source:UniProtKB/TrEMBL;Acc:H9KXU9]
ENSCJAG00000023334	KNOWN_BY_PROJECTION	protein_coding	OR3A1	scaffold:C_jacchus3.2.1:ACFV01178497.1:1:27665:1	25991	26956	D	olfactory receptor, family 3, subfamily A, member 1 [Source:HGNC Symbol;Acc:HGNC:8282]
ENSCJAG00000019434	KNOWN	protein_coding	GRM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	146693812	147151135	D	Metabotropic glutamate receptor 1 isoform alpha {ECO:0000313|EMBL:JAB50893.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036105}  [Source:UniProtKB/TrEMBL;Acc:F7E693]
ENSCJAG00000014945	KNOWN_BY_PROJECTION	protein_coding	SHISA8	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	448233	448664	D	shisa family member 8 [Source:HGNC Symbol;Acc:HGNC:18351]
ENSCJAG00000033005	NOVEL	protein_coding	ENSCJAG00000033005	scaffold:C_jacchus3.2.1:ACFV01190613.1:1:5812:1	3334	3681	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:H9KY90]
ENSCJAG00000022724	KNOWN	protein_coding	UQCR11	scaffold:C_jacchus3.2.1:GL286461.1:1:10260:1	7153	7266	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041317}  [Source:UniProtKB/TrEMBL;Acc:H9KXT8]
ENSCJAG00000021794	NOVEL	protein_coding	ENSCJAG00000021794	scaffold:C_jacchus3.2.1:ACFV01186939.1:1:8472:1	509	838	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040499}  [Source:UniProtKB/TrEMBL;Acc:H9KXP8]
ENSCJAG00000022362	NOVEL	protein_coding	ENSCJAG00000022362	scaffold:C_jacchus3.2.1:GL284948.1:1:35696:1	29602	30286	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040991}  [Source:UniProtKB/TrEMBL;Acc:H9KXS3]
ENSCJAG00000011558	NOVEL	protein_coding	ENSCJAG00000011558	chromosome:C_jacchus3.2.1:22:1:49145316:1	39132398	39146933	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021239}  [Source:UniProtKB/TrEMBL;Acc:F6RCL1]
ENSCJAG00000010854	KNOWN	protein_coding	ZNF70	scaffold:C_jacchus3.2.1:GL284745.1:1:157253:1	17246	20811	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020001}; Zinc finger protein 70 {ECO:0000313|EMBL:JAB19571.1}  [Source:UniProtKB/TrEMBL;Acc:H9KWQ8]
ENSCJAG00000011548	KNOWN_BY_PROJECTION	protein_coding	CCDC9	chromosome:C_jacchus3.2.1:22:1:49145316:1	39171821	39185699	D	coiled-coil domain containing 9 [Source:HGNC Symbol;Acc:HGNC:24560]
ENSCJAG00000022466	KNOWN_BY_PROJECTION	protein_coding	IFNA2	scaffold:C_jacchus3.2.1:GL284777.1:1:24108:1	21567	22183	D	interferon, alpha 2 [Source:HGNC Symbol;Acc:HGNC:5423]
ENSCJAG00000003578	KNOWN	protein_coding	PTPRF	chromosome:C_jacchus3.2.1:7:1:155834243:1	78254631	78351107	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006616}  [Source:UniProtKB/TrEMBL;Acc:F7HBA2]
ENSCJAG00000019448	KNOWN	protein_coding	RAB32	chromosome:C_jacchus3.2.1:4:1:171630274:1	147258009	147273866	D	Ras-related protein Rab-32 {ECO:0000313|EMBL:JAB11528.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016402}  [Source:UniProtKB/TrEMBL;Acc:F6YNF4]
ENSCJAG00000008434	KNOWN	protein_coding	ANGPTL1	chromosome:C_jacchus3.2.1:18:1:47448759:1	28158393	28180427	D	Angiopoietin-related protein 1 {ECO:0000313|EMBL:JAB29481.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050703}  [Source:UniProtKB/TrEMBL;Acc:F7EWV3]
ENSCJAG00000011545	KNOWN_BY_PROJECTION	protein_coding	INAFM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39188934	39190547	D	InaF-motif containing 1 [Source:HGNC Symbol;Acc:HGNC:27406]
ENSCJAG00000011534	KNOWN_BY_PROJECTION	protein_coding	C5AR2	chromosome:C_jacchus3.2.1:22:1:49145316:1	39243740	39253118	D	complement component 5a receptor 2 [Source:HGNC Symbol;Acc:HGNC:4527]
ENSCJAG00000021943	NOVEL	protein_coding	ENSCJAG00000021943	scaffold:C_jacchus3.2.1:GL286631.1:1:19910:1	6833	7287	D	60S ribosomal protein L27 {ECO:0000256|RuleBase:RU000575}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ3]
ENSCJAG00000033095	NOVEL	protein_coding	ENSCJAG00000033095	scaffold:C_jacchus3.2.1:ACFV01198523.1:1:2452:1	2253	2417	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020284}  [Source:UniProtKB/TrEMBL;Acc:H9KWR9]
ENSCJAG00000032192	NOVEL	protein_coding	ENSCJAG00000032192	scaffold:C_jacchus3.2.1:GL284994.1:1:102506:1	50157	51527	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040474}  [Source:UniProtKB/TrEMBL;Acc:H9KXP7]
ENSCJAG00000020363	KNOWN_BY_PROJECTION	protein_coding	FAM161B	chromosome:C_jacchus3.2.1:10:1:132174527:1	99108910	99209327	R	family with sequence similarity 161, member B [Source:HGNC Symbol;Acc:HGNC:19854]
ENSCJAG00000033053	NOVEL	protein_coding	ENSCJAG00000033053	scaffold:C_jacchus3.2.1:GL290358.1:1:6973:1	694	1083	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046823}  [Source:UniProtKB/TrEMBL;Acc:H9KY77]
ENSCJAG00000035066	NOVEL	protein_coding	ENSCJAG00000035066	scaffold:C_jacchus3.2.1:ACFV01175094.1:1:43771:1	657	1400	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047345}  [Source:UniProtKB/TrEMBL;Acc:H9KY94]
ENSCJAG00000021734	NOVEL	protein_coding	ENSCJAG00000021734	scaffold:C_jacchus3.2.1:GL285922.1:1:138250:1	124103	124563	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040446}  [Source:UniProtKB/TrEMBL;Acc:H9KXP4]
ENSCJAG00000000881	NOVEL	protein_coding	ENSCJAG00000000881	scaffold:C_jacchus3.2.1:GL285298.1:1:36172:1	13226	13357	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001501}  [Source:UniProtKB/TrEMBL;Acc:H9KVM8]
ENSCJAG00000032609	NOVEL	protein_coding	ENSCJAG00000032609	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	495942	496181	R	Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}  [Source:UniProtKB/TrEMBL;Acc:H9KY66]
ENSCJAG00000023206	KNOWN_BY_PROJECTION	protein_coding	OR5P3	scaffold:C_jacchus3.2.1:GL285501.1:1:65304:1	54843	55778	R	olfactory receptor, family 5, subfamily P, member 3 [Source:HGNC Symbol;Acc:HGNC:14784]
ENSCJAG00000035366	KNOWN_BY_PROJECTION	protein_coding	OR5P2	scaffold:C_jacchus3.2.1:GL285501.1:1:65304:1	44326	45412	R	olfactory receptor, family 5, subfamily P, member 2 [Source:HGNC Symbol;Acc:HGNC:14783]
ENSCJAG00000034212	NOVEL	protein_coding	ENSCJAG00000034212	scaffold:C_jacchus3.2.1:GL285501.1:1:65304:1	35671	36609	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KYG1]
ENSCJAG00000022122	NOVEL	protein_coding	ENSCJAG00000022122	scaffold:C_jacchus3.2.1:GL285783.1:1:45519:1	9950	10581	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040781}  [Source:UniProtKB/TrEMBL;Acc:H9KXR1]
ENSCJAG00000011504	KNOWN_BY_PROJECTION	protein_coding	DHX34	chromosome:C_jacchus3.2.1:22:1:49145316:1	39263184	39301099	D	DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Source:HGNC Symbol;Acc:HGNC:16719]
ENSCJAG00000021901	NOVEL	protein_coding	ENSCJAG00000021901	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	807	1829	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050483}  [Source:UniProtKB/TrEMBL;Acc:H9KYH0]
ENSCJAG00000008446	KNOWN_BY_PROJECTION	protein_coding	TEX35	chromosome:C_jacchus3.2.1:18:1:47448759:1	28483327	28493557	R	testis expressed 35 [Source:HGNC Symbol;Acc:HGNC:25366]
ENSCJAG00000022772	KNOWN	protein_coding	HIST1H2BD	scaffold:C_jacchus3.2.1:ACFV01200611.1:1:2115:1	236	715	D	Histone H2B {ECO:0000256|RuleBase:RU000451}  [Source:UniProtKB/TrEMBL;Acc:F7H6T6]
ENSCJAG00000021956	NOVEL	protein_coding	ENSCJAG00000021956	scaffold:C_jacchus3.2.1:GL286547.1:1:40020:1	37322	38263	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:H9KXQ6]
ENSCJAG00000023271	NOVEL	protein_coding	ENSCJAG00000023271	scaffold:C_jacchus3.2.1:GL289951.1:1:498240:1	242688	243110	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041783}  [Source:UniProtKB/TrEMBL;Acc:H9KXX0]
ENSCJAG00000022331	KNOWN_BY_PROJECTION	protein_coding	OR5C1	scaffold:C_jacchus3.2.1:GL284738.1:1:83425:1	36452	37534	D	olfactory receptor, family 5, subfamily C, member 1 [Source:HGNC Symbol;Acc:HGNC:8331]
ENSCJAG00000019454	KNOWN_BY_PROJECTION	protein_coding	ADGB	chromosome:C_jacchus3.2.1:4:1:171630274:1	147316716	147518743	D	androglobin [Source:HGNC Symbol;Acc:HGNC:21212]
ENSCJAG00000022835	NOVEL	protein_coding	ENSCJAG00000022835	scaffold:C_jacchus3.2.1:GL288443.1:1:22119:1	6421	6678	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041416}  [Source:UniProtKB/TrEMBL;Acc:H9KXV0]
ENSCJAG00000023093	NOVEL	protein_coding	ENSCJAG00000023093	scaffold:C_jacchus3.2.1:ACFV01194091.1:1:2973:1	1093	1554	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041626}  [Source:UniProtKB/TrEMBL;Acc:H9KXV8]
ENSCJAG00000012102	NOVEL	protein_coding	ENSCJAG00000012102	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	32870	33640	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022202}  [Source:UniProtKB/TrEMBL;Acc:H9KWW2]
ENSCJAG00000032835	NOVEL	protein_coding	ENSCJAG00000032835	scaffold:C_jacchus3.2.1:ACFV01193658.1:1:2377:1	464	871	D	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:H9KXT1]
ENSCJAG00000008458	KNOWN	protein_coding	RASAL2	chromosome:C_jacchus3.2.1:18:1:47448759:1	28539081	28921865	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050612}  [Source:UniProtKB/TrEMBL;Acc:F7H8E7]
ENSCJAG00000011475	KNOWN_BY_PROJECTION	protein_coding	MEIS3	chromosome:C_jacchus3.2.1:22:1:49145316:1	39326123	39335190	R	Meis homeobox 3 [Source:HGNC Symbol;Acc:HGNC:29537]
ENSCJAG00000011460	KNOWN_BY_PROJECTION	protein_coding	KPTN	chromosome:C_jacchus3.2.1:22:1:49145316:1	39390096	39399839	R	kaptin (actin binding protein) [Source:HGNC Symbol;Acc:HGNC:6404]
ENSCJAG00000022866	NOVEL	protein_coding	ENSCJAG00000022866	scaffold:C_jacchus3.2.1:ACFV01179962.1:1:17875:1	9962	10387	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041437}  [Source:UniProtKB/TrEMBL;Acc:H9KXV1]
ENSCJAG00000011450	KNOWN_BY_PROJECTION	protein_coding	NAPA	chromosome:C_jacchus3.2.1:22:1:49145316:1	39404277	39431558	R	N-ethylmaleimide-sensitive factor attachment protein, alpha [Source:HGNC Symbol;Acc:HGNC:7641]
ENSCJAG00000034859	NOVEL	protein_coding	ENSCJAG00000034859	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	568888	569319	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007969}  [Source:UniProtKB/TrEMBL;Acc:H9KW42]
ENSCJAG00000018221	NOVEL	protein_coding	ENSCJAG00000018221	scaffold:C_jacchus3.2.1:GL285921.1:1:74814:1	25178	25336	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033802}  [Source:UniProtKB/TrEMBL;Acc:H9KXD3]
ENSCJAG00000035011	KNOWN_BY_PROJECTION	protein_coding	DUSP21	scaffold:C_jacchus3.2.1:GL285991.1:1:28052:1	21590	22461	D	dual specificity phosphatase 21 [Source:HGNC Symbol;Acc:HGNC:20476]
ENSCJAG00000022563	NOVEL	protein_coding	ENSCJAG00000022563	scaffold:C_jacchus3.2.1:GL290530.1:1:5459:1	1247	1732	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041356}  [Source:UniProtKB/TrEMBL;Acc:F7F285]
ENSCJAG00000021764	NOVEL	protein_coding	ENSCJAG00000021764	scaffold:C_jacchus3.2.1:GL284808.1:1:20441:1	6224	6568	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040469}  [Source:UniProtKB/TrEMBL;Acc:H9KXP6]
ENSCJAG00000023295	NOVEL	protein_coding	ENSCJAG00000023295	scaffold:C_jacchus3.2.1:GL285413.1:1:19836:1	1245	1925	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041807}  [Source:UniProtKB/TrEMBL;Acc:H9KXX1]
ENSCJAG00000003831	NOVEL	processed_pseudogene	ENSCJAG00000003831	scaffold:C_jacchus3.2.1:GL286824.1:1:7336:1	3756	3986	R	<no descrition>
ENSCJAG00000023103	NOVEL	processed_pseudogene	ENSCJAG00000023103	chromosome:C_jacchus3.2.1:Y:1:2853901:1	170054	171079	R	<no descrition>
ENSCJAG00000034662	NOVEL	processed_pseudogene	ENSCJAG00000034662	chromosome:C_jacchus3.2.1:Y:1:2853901:1	246191	246967	R	<no descrition>
ENSCJAG00000022353	NOVEL	processed_pseudogene	ENSCJAG00000022353	scaffold:C_jacchus3.2.1:GL284785.1:1:66249:1	20881	21228	D	<no descrition>
ENSCJAG00000033546	NOVEL	processed_pseudogene	ENSCJAG00000033546	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	215035	215373	D	<no descrition>
ENSCJAG00000008670	NOVEL	processed_pseudogene	ENSCJAG00000008670	scaffold:C_jacchus3.2.1:GL286278.1:1:54389:1	7332	7664	R	<no descrition>
ENSCJAG00000003704	KNOWN_BY_PROJECTION	protein_coding	KDM4A	chromosome:C_jacchus3.2.1:7:1:155834243:1	78377339	78432949	D	lysine (K)-specific demethylase 4A [Source:HGNC Symbol;Acc:HGNC:22978]
ENSCJAG00000023352	NOVEL	processed_pseudogene	ENSCJAG00000023352	scaffold:C_jacchus3.2.1:GL286459.1:1:372756:1	168226	168876	D	<no descrition>
ENSCJAG00000021724	NOVEL	processed_pseudogene	ENSCJAG00000021724	scaffold:C_jacchus3.2.1:GL287991.1:1:26633:1	11172	12559	D	<no descrition>
ENSCJAG00000023427	KNOWN_BY_PROJECTION	protein_coding	STRA13	chromosome:C_jacchus3.2.1:5:1:159171411:1	110882552	110882782	D	stimulated by retinoic acid 13 [Source:HGNC Symbol;Acc:HGNC:11422]
ENSCJAG00000020308	KNOWN	protein_coding	ZNF410	chromosome:C_jacchus3.2.1:10:1:132174527:1	99139354	99185382	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037811}; Zinc finger protein 410 isoform b {ECO:0000313|EMBL:JAB04318.1}  [Source:UniProtKB/TrEMBL;Acc:F7AW69]
ENSCJAG00000022209	NOVEL	protein_coding	ENSCJAG00000022209	chromosome:C_jacchus3.2.1:5:1:159171411:1	112831228	112831929	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040861}  [Source:UniProtKB/TrEMBL;Acc:F7I9B6]
ENSCJAG00000022210	NOVEL	protein_coding	ENSCJAG00000022210	chromosome:C_jacchus3.2.1:5:1:159171411:1	112836913	112837623	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040862}  [Source:UniProtKB/TrEMBL;Acc:F7I9B5]
ENSCJAG00000022211	KNOWN_BY_PROJECTION	protein_coding	KRTAP3-1	chromosome:C_jacchus3.2.1:5:1:159171411:1	112846627	112847220	R	keratin associated protein 3-1 [Source:HGNC Symbol;Acc:HGNC:16778]
ENSCJAG00000022475	KNOWN_BY_PROJECTION	protein_coding	KRTAP29-1	chromosome:C_jacchus3.2.1:5:1:159171411:1	113031592	113032617	R	keratin associated protein 29-1 [Source:HGNC Symbol;Acc:HGNC:34211]
ENSCJAG00000022476	NOVEL	protein_coding	ENSCJAG00000022476	chromosome:C_jacchus3.2.1:5:1:159171411:1	113044939	113045716	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041089}  [Source:UniProtKB/TrEMBL;Acc:F7FGA5]
ENSCJAG00000034230	NOVEL	protein_coding	ENSCJAG00000034230	chromosome:C_jacchus3.2.1:5:1:159171411:1	121370332	121370571	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042140}  [Source:UniProtKB/TrEMBL;Acc:F6V8U9]
ENSCJAG00000035642	NOVEL	protein_coding	ENSCJAG00000035642	chromosome:C_jacchus3.2.1:5:1:159171411:1	122961770	122961973	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052278}  [Source:UniProtKB/TrEMBL;Acc:F7IGU3]
ENSCJAG00000022288	NOVEL	protein_coding	ENSCJAG00000022288	chromosome:C_jacchus3.2.1:5:1:159171411:1	127133546	127133980	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040935}  [Source:UniProtKB/TrEMBL;Acc:F7HXF9]
ENSCJAG00000019499	NOVEL	protein_coding	ENSCJAG00000019499	chromosome:C_jacchus3.2.1:5:1:159171411:1	127480588	127481030	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051439}  [Source:UniProtKB/TrEMBL;Acc:F7BKE6]
ENSCJAG00000022289	KNOWN	protein_coding	SOCS3	chromosome:C_jacchus3.2.1:5:1:159171411:1	127616309	127617158	R	Suppressor of cytokine signaling 3 {ECO:0000313|EMBL:JAB10963.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040936}  [Source:UniProtKB/TrEMBL;Acc:F7HXF7]
ENSCJAG00000009619	NOVEL	protein_coding	ENSCJAG00000009619	chromosome:C_jacchus3.2.1:5:1:159171411:1	128979097	128979213	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042340}  [Source:UniProtKB/TrEMBL;Acc:F6VRX0]
ENSCJAG00000022873	NOVEL	protein_coding	ENSCJAG00000022873	chromosome:C_jacchus3.2.1:5:1:159171411:1	129619889	129620209	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041444}  [Source:UniProtKB/TrEMBL;Acc:F7HAM4]
ENSCJAG00000021894	KNOWN	protein_coding	MRP63	chromosome:C_jacchus3.2.1:5:1:159171411:1	134529785	134530104	D	Ribosomal protein 63, mitochondrial {ECO:0000313|EMBL:JAB04381.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040586}  [Source:UniProtKB/TrEMBL;Acc:F7INJ2]
ENSCJAG00000018907	NOVEL	protein_coding	ENSCJAG00000018907	chromosome:C_jacchus3.2.1:5:1:159171411:1	137541846	137542403	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035102}  [Source:UniProtKB/TrEMBL;Acc:F7I1W7]
ENSCJAG00000008489	NOVEL	protein_coding	ENSCJAG00000008489	chromosome:C_jacchus3.2.1:18:1:47448759:1	28612186	28612568	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015622}  [Source:UniProtKB/TrEMBL;Acc:F7H4P6]
ENSCJAG00000034145	NOVEL	protein_coding	ENSCJAG00000034145	chromosome:C_jacchus3.2.1:5:1:159171411:1	140092250	140093035	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042576}  [Source:UniProtKB/TrEMBL;Acc:F6UIP5]
ENSCJAG00000035165	NOVEL	protein_coding	ENSCJAG00000035165	chromosome:C_jacchus3.2.1:18:1:47448759:1	28894782	28895146	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050135}  [Source:UniProtKB/TrEMBL;Acc:F7H4E7]
ENSCJAG00000035500	NOVEL	protein_coding	ENSCJAG00000035500	chromosome:C_jacchus3.2.1:5:1:159171411:1	142983140	142984278	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046101}  [Source:UniProtKB/TrEMBL;Acc:F6XNM7]
ENSCJAG00000022570	NOVEL	protein_coding	ENSCJAG00000022570	chromosome:C_jacchus3.2.1:5:1:159171411:1	147143823	147144461	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041171}  [Source:UniProtKB/TrEMBL;Acc:F7DWX2]
ENSCJAG00000022569	KNOWN	protein_coding	MAB21L1	chromosome:C_jacchus3.2.1:5:1:159171411:1	148661678	148662757	R	Protein mab-21-like 1 {ECO:0000313|EMBL:JAB44734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041170}  [Source:UniProtKB/TrEMBL;Acc:F7DWX9]
ENSCJAG00000022568	KNOWN_BY_PROJECTION	protein_coding	UQCR10	chromosome:C_jacchus3.2.1:5:1:159171411:1	150415623	150416039	R	ubiquinol-cytochrome c reductase, complex III subunit X [Source:HGNC Symbol;Acc:HGNC:30863]
ENSCJAG00000011435	KNOWN_BY_PROJECTION	protein_coding	ZNF541	chromosome:C_jacchus3.2.1:22:1:49145316:1	39437889	39469204	R	zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
ENSCJAG00000011418	KNOWN_BY_PROJECTION	protein_coding	GLTSCR1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39520684	39626242	D	glioma tumor suppressor candidate region gene 1 [Source:HGNC Symbol;Acc:HGNC:4332]
ENSCJAG00000003737	KNOWN	protein_coding	ST3GAL3	chromosome:C_jacchus3.2.1:7:1:155834243:1	78435789	78680972	D	CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform g {ECO:0000313|EMBL:JAB02152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006872}  [Source:UniProtKB/TrEMBL;Acc:F7CX81]
ENSCJAG00000008493	KNOWN_BY_PROJECTION	protein_coding	SEC16B	chromosome:C_jacchus3.2.1:18:1:47448759:1	28984998	29072713	D	SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
ENSCJAG00000003859	KNOWN_BY_PROJECTION	protein_coding	ARTN	chromosome:C_jacchus3.2.1:7:1:155834243:1	78683537	78687532	D	artemin [Source:HGNC Symbol;Acc:HGNC:727]
ENSCJAG00000019476	KNOWN	protein_coding	STXBP5	chromosome:C_jacchus3.2.1:4:1:171630274:1	147933626	148110961	D	Syntaxin-binding protein 5 isoform b {ECO:0000313|EMBL:JAB03923.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036277}  [Source:UniProtKB/TrEMBL;Acc:F7E5V3]
ENSCJAG00000017847	KNOWN_BY_PROJECTION	protein_coding	LHFP	chromosome:C_jacchus3.2.1:5:1:159171411:1	152840372	152840758	R	lipoma HMGIC fusion partner [Source:HGNC Symbol;Acc:HGNC:6586]
ENSCJAG00000022567	NOVEL	protein_coding	ENSCJAG00000022567	chromosome:C_jacchus3.2.1:5:1:159171411:1	155016108	155016470	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041168}  [Source:UniProtKB/TrEMBL;Acc:F7DWY8]
ENSCJAG00000003878	KNOWN_BY_PROJECTION	protein_coding	IPO13	chromosome:C_jacchus3.2.1:7:1:155834243:1	78698917	78701932	D	importin 13 [Source:HGNC Symbol;Acc:HGNC:16853]
ENSCJAG00000017548	KNOWN_BY_PROJECTION	protein_coding	SMIM2	chromosome:C_jacchus3.2.1:5:1:159171411:1	157499107	157499361	R	small integral membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:28776]
ENSCJAG00000022284	NOVEL	protein_coding	ENSCJAG00000022284	chromosome:C_jacchus3.2.1:5:1:159171411:1	159011021	159011371	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040931}  [Source:UniProtKB/TrEMBL;Acc:F7HXG5]
ENSCJAG00000023214	KNOWN_BY_PROJECTION	protein_coding	SIAH3	chromosome:C_jacchus3.2.1:5:1:159171411:1	159112404	159113078	R	siah E3 ubiquitin protein ligase family member 3 [Source:HGNC Symbol;Acc:HGNC:30553]
ENSCJAG00000022629	NOVEL	processed_pseudogene	ENSCJAG00000022629	chromosome:C_jacchus3.2.1:5:1:159171411:1	120680762	120681190	D	<no descrition>
ENSCJAG00000012601	NOVEL	processed_pseudogene	ENSCJAG00000012601	chromosome:C_jacchus3.2.1:5:1:159171411:1	121125499	121125681	R	<no descrition>
ENSCJAG00000023053	NOVEL	processed_pseudogene	ENSCJAG00000023053	chromosome:C_jacchus3.2.1:5:1:159171411:1	125947302	125948003	D	<no descrition>
ENSCJAG00000021715	NOVEL	processed_pseudogene	ENSCJAG00000021715	chromosome:C_jacchus3.2.1:5:1:159171411:1	126904807	126905076	R	<no descrition>
ENSCJAG00000034888	NOVEL	processed_pseudogene	ENSCJAG00000034888	chromosome:C_jacchus3.2.1:5:1:159171411:1	134661645	134661940	D	<no descrition>
ENSCJAG00000021754	NOVEL	processed_pseudogene	ENSCJAG00000021754	chromosome:C_jacchus3.2.1:5:1:159171411:1	143502968	143503432	D	<no descrition>
ENSCJAG00000018001	NOVEL	processed_pseudogene	ENSCJAG00000018001	chromosome:C_jacchus3.2.1:5:1:159171411:1	150316386	150317396	R	<no descrition>
ENSCJAG00000022280	NOVEL	processed_pseudogene	ENSCJAG00000022280	chromosome:C_jacchus3.2.1:5:1:159171411:1	158690876	158691145	R	<no descrition>
ENSCJAG00000031640	NOVEL	processed_pseudogene	ENSCJAG00000031640	chromosome:C_jacchus3.2.1:5:1:159171411:1	158733004	158733453	R	<no descrition>
ENSCJAG00000004840	KNOWN_BY_PROJECTION	protein_coding	CCDC54	chromosome:C_jacchus3.2.1:15:1:98464013:1	89571853	89572946	R	coiled-coil domain containing 54 [Source:HGNC Symbol;Acc:HGNC:30703]
ENSCJAG00000003879	KNOWN_BY_PROJECTION	protein_coding	SLC6A9	chromosome:C_jacchus3.2.1:7:1:155834243:1	78714314	78747770	R	solute carrier family 6 (neurotransmitter transporter, glycine), member 9 [Source:HGNC Symbol;Acc:HGNC:11056]
ENSCJAG00000023181	NOVEL	protein_coding	ENSCJAG00000023181	chromosome:C_jacchus3.2.1:15:1:98464013:1	94854018	94854425	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041703}  [Source:UniProtKB/TrEMBL;Acc:F7GUP0]
ENSCJAG00000023182	NOVEL	protein_coding	ENSCJAG00000023182	chromosome:C_jacchus3.2.1:15:1:98464013:1	94882093	94883463	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041704}  [Source:UniProtKB/TrEMBL;Acc:F7GUN7]
ENSCJAG00000023183	NOVEL	protein_coding	ENSCJAG00000023183	chromosome:C_jacchus3.2.1:15:1:98464013:1	95075759	95076025	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041705}  [Source:UniProtKB/TrEMBL;Acc:F7GUN5]
ENSCJAG00000023184	NOVEL	protein_coding	ENSCJAG00000023184	chromosome:C_jacchus3.2.1:15:1:98464013:1	95221574	95222659	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041706}  [Source:UniProtKB/TrEMBL;Acc:F7GUN1]
ENSCJAG00000023185	KNOWN_BY_PROJECTION	protein_coding	GPR15	chromosome:C_jacchus3.2.1:15:1:98464013:1	98373229	98374444	R	G protein-coupled receptor 15 [Source:HGNC Symbol;Acc:HGNC:4469]
ENSCJAG00000000529	KNOWN	protein_coding	UCN3	scaffold:C_jacchus3.2.1:GL285254.1:1:28942:1	23422	23907	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000901}; Urocortin-3 preproprotein {ECO:0000313|EMBL:JAB14433.1}  [Source:UniProtKB/TrEMBL;Acc:H9KVL2]
ENSCJAG00000003910	KNOWN_BY_PROJECTION	protein_coding	KLF17	chromosome:C_jacchus3.2.1:7:1:155834243:1	78853025	78866855	D	Kruppel-like factor 17 [Source:HGNC Symbol;Acc:HGNC:18830]
ENSCJAG00000023175	NOVEL	protein_coding	ENSCJAG00000023175	scaffold:C_jacchus3.2.1:GL290436.1:1:5287:1	62	616	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041697}  [Source:UniProtKB/TrEMBL;Acc:H9KXW0]
ENSCJAG00000022640	NOVEL	protein_coding	ENSCJAG00000022640	chromosome:C_jacchus3.2.1:8:1:128169293:1	958953	959363	R	Histone H3 {ECO:0000256|RuleBase:RU004471}  [Source:UniProtKB/TrEMBL;Acc:F7HAU9]
ENSCJAG00000033993	NOVEL	protein_coding	ENSCJAG00000033993	chromosome:C_jacchus3.2.1:7:1:155834243:1	78869753	78872895	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044275}  [Source:UniProtKB/TrEMBL;Acc:F7D2E4]
ENSCJAG00000017658	NOVEL	pseudogene	ENSCJAG00000017658	chromosome:C_jacchus3.2.1:7:1:155834243:1	78917700	78918283	R	<no descrition>
ENSCJAG00000022798	NOVEL	protein_coding	ENSCJAG00000022798	chromosome:C_jacchus3.2.1:8:1:128169293:1	3182695	3182985	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041381}  [Source:UniProtKB/TrEMBL;Acc:F7EN97]
ENSCJAG00000022799	KNOWN_BY_PROJECTION	protein_coding	GPR141	chromosome:C_jacchus3.2.1:8:1:128169293:1	5641596	5642513	D	G protein-coupled receptor 141 [Source:HGNC Symbol;Acc:HGNC:19997]
ENSCJAG00000022800	NOVEL	protein_coding	ENSCJAG00000022800	chromosome:C_jacchus3.2.1:8:1:128169293:1	6071872	6072165	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041383}  [Source:UniProtKB/TrEMBL;Acc:F7EAZ7]
ENSCJAG00000022801	NOVEL	protein_coding	ENSCJAG00000022801	chromosome:C_jacchus3.2.1:8:1:128169293:1	6245730	6246449	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041384}  [Source:UniProtKB/TrEMBL;Acc:F7EAY8]
ENSCJAG00000012684	NOVEL	protein_coding	ENSCJAG00000012684	chromosome:C_jacchus3.2.1:8:1:128169293:1	6447991	6448404	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023228}  [Source:UniProtKB/TrEMBL;Acc:F7IQC0]
ENSCJAG00000031456	NOVEL	protein_coding	ENSCJAG00000031456	chromosome:C_jacchus3.2.1:8:1:128169293:1	8471741	8472182	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044814}  [Source:UniProtKB/TrEMBL;Acc:F7EBT9]
ENSCJAG00000023130	NOVEL	protein_coding	ENSCJAG00000023130	chromosome:C_jacchus3.2.1:8:1:128169293:1	14222070	14222279	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041658}  [Source:UniProtKB/TrEMBL;Acc:F7HFG4]
ENSCJAG00000003922	KNOWN	protein_coding	DMAP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	78939699	78948932	D	DNA methyltransferase 1-associated protein 1 {ECO:0000313|EMBL:JAB07628.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007246}  [Source:UniProtKB/TrEMBL;Acc:F6PI94]
ENSCJAG00000022459	NOVEL	protein_coding	ENSCJAG00000022459	chromosome:C_jacchus3.2.1:8:1:128169293:1	20704182	20704771	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041072}  [Source:UniProtKB/TrEMBL;Acc:F7FGF6]
ENSCJAG00000008244	NOVEL	protein_coding	ENSCJAG00000008244	chromosome:C_jacchus3.2.1:8:1:128169293:1	27961173	27962184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015214}  [Source:UniProtKB/TrEMBL;Acc:F7GUS4]
ENSCJAG00000011415	KNOWN_BY_PROJECTION	protein_coding	EHD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	39634976	39654918	D	EH-domain containing 2 [Source:HGNC Symbol;Acc:HGNC:3243]
ENSCJAG00000022145	NOVEL	protein_coding	ENSCJAG00000022145	chromosome:C_jacchus3.2.1:8:1:128169293:1	27980489	27980908	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021669}  [Source:UniProtKB/TrEMBL;Acc:F6QYV7]
ENSCJAG00000022143	NOVEL	protein_coding	RPL26	chromosome:C_jacchus3.2.1:8:1:128169293:1	28317065	28317502	D	Ribosomal protein L26 (Predicted) {ECO:0000313|EMBL:ABZ80214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040802}  [Source:UniProtKB/TrEMBL;Acc:B0VXL1]
ENSCJAG00000031142	NOVEL	pseudogene	ENSCJAG00000031142	chromosome:C_jacchus3.2.1:22:1:49145316:1	39659655	39659827	R	<no descrition>
ENSCJAG00000022141	NOVEL	protein_coding	ENSCJAG00000022141	chromosome:C_jacchus3.2.1:8:1:128169293:1	29405521	29405992	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040800}  [Source:UniProtKB/TrEMBL;Acc:F7IIT6]
ENSCJAG00000032024	KNOWN_BY_PROJECTION	protein_coding	DCAF4	chromosome:C_jacchus3.2.1:8:1:128169293:1	29653943	29654971	R	DDB1 and CUL4 associated factor 4 [Source:HGNC Symbol;Acc:HGNC:20229]
ENSCJAG00000011385	NOVEL	protein_coding	ENSCJAG00000011385	chromosome:C_jacchus3.2.1:22:1:49145316:1	39661108	39678798	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020955}  [Source:UniProtKB/TrEMBL;Acc:F7GVQ0]
ENSCJAG00000023193	NOVEL	protein_coding	ENSCJAG00000023193	chromosome:C_jacchus3.2.1:8:1:128169293:1	32275531	32275971	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7GPK3]
ENSCJAG00000023192	KNOWN	protein_coding	ATP5E	chromosome:C_jacchus3.2.1:8:1:128169293:1	32580325	32580480	D	ATP synthase subunit epsilon, mitochondrial {ECO:0000313|EMBL:JAB48357.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041714}  [Source:UniProtKB/TrEMBL;Acc:F7GPK5]
ENSCJAG00000037909	NOVEL	protein_coding	ENSCJAG00000037909	chromosome:C_jacchus3.2.1:22:1:49145316:1	39664728	39671734	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052314}  [Source:UniProtKB/TrEMBL;Acc:F7HVG2]
ENSCJAG00000023190	KNOWN_BY_PROJECTION	protein_coding	PRPS1L1	chromosome:C_jacchus3.2.1:8:1:128169293:1	38134074	38135146	D	phosphoribosyl pyrophosphate synthetase 1-like 1 [Source:HGNC Symbol;Acc:HGNC:9463]
ENSCJAG00000011381	KNOWN_BY_PROJECTION	protein_coding	TPRX1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39716111	39717331	R	tetra-peptide repeat homeobox 1 [Source:HGNC Symbol;Acc:HGNC:32174]
ENSCJAG00000033494	NOVEL	protein_coding	CAJA-T2R2	chromosome:C_jacchus3.2.1:8:1:128169293:1	43720361	43721095	R	Bitter taste receptor T2R2 {ECO:0000313|EMBL:BAD97905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048155}  [Source:UniProtKB/TrEMBL;Acc:Q50KZ3]
ENSCJAG00000020968	KNOWN_BY_PROJECTION	protein_coding	CRX	chromosome:C_jacchus3.2.1:22:1:49145316:1	39746295	39751489	D	cone-rod homeobox [Source:HGNC Symbol;Acc:HGNC:2383]
ENSCJAG00000022964	NOVEL	protein_coding	ENSCJAG00000022964	chromosome:C_jacchus3.2.1:8:1:128169293:1	46252874	46253359	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041519}  [Source:UniProtKB/TrEMBL;Acc:F7GHP2]
ENSCJAG00000035253	NOVEL	protein_coding	ENSCJAG00000035253	chromosome:C_jacchus3.2.1:8:1:128169293:1	46349789	46350220	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049946}  [Source:UniProtKB/TrEMBL;Acc:F7CAT5]
ENSCJAG00000034954	NOVEL	protein_coding	ENSCJAG00000034954	chromosome:C_jacchus3.2.1:8:1:128169293:1	47417349	47417663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046363}  [Source:UniProtKB/TrEMBL;Acc:F6WYL9]
ENSCJAG00000005269	KNOWN_BY_PROJECTION	protein_coding	SULT2A1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39778822	39793077	R	sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 [Source:HGNC Symbol;Acc:HGNC:11458]
ENSCJAG00000023189	NOVEL	protein_coding	ENSCJAG00000023189	chromosome:C_jacchus3.2.1:8:1:128169293:1	50033626	50034045	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041711}  [Source:UniProtKB/TrEMBL;Acc:F7GUH4]
ENSCJAG00000023188	NOVEL	protein_coding	ENSCJAG00000023188	chromosome:C_jacchus3.2.1:8:1:128169293:1	50991302	50991805	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041710}  [Source:UniProtKB/TrEMBL;Acc:F7GUH8]
ENSCJAG00000005262	KNOWN_BY_PROJECTION	protein_coding	BSPH1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39833960	39837657	R	binder of sperm protein homolog 1 [Source:HGNC Symbol;Acc:HGNC:33906]
ENSCJAG00000033086	NOVEL	protein_coding	ENSCJAG00000033086	chromosome:C_jacchus3.2.1:8:1:128169293:1	52822858	52823835	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047204}  [Source:UniProtKB/TrEMBL;Acc:F7IMX4]
ENSCJAG00000023040	NOVEL	protein_coding	ENSCJAG00000023040	chromosome:C_jacchus3.2.1:8:1:128169293:1	55766931	55767934	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041586}  [Source:UniProtKB/TrEMBL;Acc:F7F1R3]
ENSCJAG00000022875	KNOWN_BY_PROJECTION	protein_coding	VASP	chromosome:C_jacchus3.2.1:8:1:128169293:1	60686091	60688167	D	vasodilator-stimulated phosphoprotein [Source:HGNC Symbol;Acc:HGNC:12652]
ENSCJAG00000008133	KNOWN_BY_PROJECTION	protein_coding	CABP5	chromosome:C_jacchus3.2.1:22:1:49145316:1	39902064	39912118	R	calcium binding protein 5 [Source:HGNC Symbol;Acc:HGNC:13714]
ENSCJAG00000003588	NOVEL	protein_coding	ENSCJAG00000003588	chromosome:C_jacchus3.2.1:8:1:128169293:1	61161742	61162086	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006502}  [Source:UniProtKB/TrEMBL;Acc:F7FHF9]
ENSCJAG00000022874	NOVEL	protein_coding	ENSCJAG00000022874	chromosome:C_jacchus3.2.1:8:1:128169293:1	61196574	61196948	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041445}  [Source:UniProtKB/TrEMBL;Acc:F7HAM2]
ENSCJAG00000031116	NOVEL	protein_coding	ENSCJAG00000031116	chromosome:C_jacchus3.2.1:8:1:128169293:1	63008463	63008735	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003685}  [Source:UniProtKB/TrEMBL;Acc:F7GUB9]
ENSCJAG00000000523	KNOWN_BY_PROJECTION	protein_coding	C19orf68	chromosome:C_jacchus3.2.1:22:1:49145316:1	39929155	39943015	R	chromosome 19 open reading frame 68 [Source:HGNC Symbol;Acc:HGNC:34495]
ENSCJAG00000022923	NOVEL	protein_coding	ENSCJAG00000022923	chromosome:C_jacchus3.2.1:8:1:128169293:1	69679629	69680192	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041484}  [Source:UniProtKB/TrEMBL;Acc:F7H057]
ENSCJAG00000022922	NOVEL	protein_coding	ENSCJAG00000022922	chromosome:C_jacchus3.2.1:8:1:128169293:1	70427960	70428650	D	40S ribosomal protein S8 {ECO:0000256|RuleBase:RU000669}  [Source:UniProtKB/TrEMBL;Acc:F7H062]
ENSCJAG00000003995	KNOWN	protein_coding	ERI3	chromosome:C_jacchus3.2.1:7:1:155834243:1	78949321	79087580	R	ERI1 exoribonuclease 3 {ECO:0000313|EMBL:JAB10258.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007336}  [Source:UniProtKB/TrEMBL;Acc:F6RWU0]
ENSCJAG00000022988	NOVEL	protein_coding	ENSCJAG00000022988	chromosome:C_jacchus3.2.1:8:1:128169293:1	73626519	73627075	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041543}  [Source:UniProtKB/TrEMBL;Acc:F7FTZ3]
ENSCJAG00000022350	NOVEL	processed_pseudogene	ENSCJAG00000022350	chromosome:C_jacchus3.2.1:15:1:98464013:1	92112267	92113196	R	<no descrition>
ENSCJAG00000034752	NOVEL	processed_pseudogene	ENSCJAG00000034752	chromosome:C_jacchus3.2.1:8:1:128169293:1	26491781	26492293	R	<no descrition>
ENSCJAG00000022144	NOVEL	processed_pseudogene	ENSCJAG00000022144	chromosome:C_jacchus3.2.1:8:1:128169293:1	27999118	27999651	R	<no descrition>
ENSCJAG00000032296	NOVEL	processed_pseudogene	ENSCJAG00000032296	chromosome:C_jacchus3.2.1:8:1:128169293:1	28685011	28685367	R	<no descrition>
ENSCJAG00000022142	NOVEL	processed_pseudogene	ENSCJAG00000022142	chromosome:C_jacchus3.2.1:8:1:128169293:1	28699414	28699791	R	<no descrition>
ENSCJAG00000034832	NOVEL	processed_pseudogene	ENSCJAG00000034832	chromosome:C_jacchus3.2.1:8:1:128169293:1	32717282	32717557	R	<no descrition>
ENSCJAG00000023191	NOVEL	processed_pseudogene	ENSCJAG00000023191	chromosome:C_jacchus3.2.1:8:1:128169293:1	34337276	34337623	D	<no descrition>
ENSCJAG00000022950	NOVEL	processed_pseudogene	ENSCJAG00000022950	chromosome:C_jacchus3.2.1:8:1:128169293:1	46846866	46847078	R	<no descrition>
ENSCJAG00000022902	NOVEL	processed_pseudogene	ENSCJAG00000022902	chromosome:C_jacchus3.2.1:8:1:128169293:1	62795760	62796218	R	<no descrition>
ENSCJAG00000023049	NOVEL	processed_pseudogene	ENSCJAG00000023049	chromosome:C_jacchus3.2.1:8:1:128169293:1	72461555	72462013	R	<no descrition>
ENSCJAG00000020369	KNOWN	protein_coding	COQ6	chromosome:C_jacchus3.2.1:10:1:132174527:1	99209433	99224253	D	Ubiquinone biosynthesis monooxygenase COQ6 isoform a {ECO:0000313|EMBL:JAB15698.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037899}  [Source:UniProtKB/TrEMBL;Acc:F6YUG8]
ENSCJAG00000022774	NOVEL	protein_coding	ENSCJAG00000022774	chromosome:C_jacchus3.2.1:11:1:130397257:1	9999982	10000218	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041357}  [Source:UniProtKB/TrEMBL;Acc:F7F281]
ENSCJAG00000022773	NOVEL	protein_coding	ENSCJAG00000022773	chromosome:C_jacchus3.2.1:11:1:130397257:1	10539296	10539764	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041356}  [Source:UniProtKB/TrEMBL;Acc:F7F285]
ENSCJAG00000012245	NOVEL	protein_coding	ENSCJAG00000012245	chromosome:C_jacchus3.2.1:11:1:130397257:1	11142650	11143324	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046806}  [Source:UniProtKB/TrEMBL;Acc:F7HMS9]
ENSCJAG00000012568	NOVEL	protein_coding	ENSCJAG00000012568	chromosome:C_jacchus3.2.1:11:1:130397257:1	12940335	12941500	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022996}  [Source:UniProtKB/TrEMBL;Acc:F7I3J1]
ENSCJAG00000023010	NOVEL	protein_coding	ENSCJAG00000023010	chromosome:C_jacchus3.2.1:11:1:130397257:1	16643476	16643931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041556}  [Source:UniProtKB/TrEMBL;Acc:F7FFA7]
ENSCJAG00000004057	KNOWN_BY_PROJECTION	protein_coding	RNF220	chromosome:C_jacchus3.2.1:7:1:155834243:1	79365910	79404133	D	ring finger protein 220 [Source:HGNC Symbol;Acc:HGNC:25552]
ENSCJAG00000036023	NOVEL	protein_coding	ENSCJAG00000036023	chromosome:C_jacchus3.2.1:11:1:130397257:1	20423284	20423442	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052344}  [Source:UniProtKB/TrEMBL;Acc:F7HK66]
ENSCJAG00000023447	NOVEL	protein_coding	ENSCJAG00000023447	chromosome:C_jacchus3.2.1:11:1:130397257:1	20800060	20800455	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041940}  [Source:UniProtKB/TrEMBL;Acc:F7GP39]
ENSCJAG00000023448	KNOWN_BY_PROJECTION	protein_coding	OR6X1	chromosome:C_jacchus3.2.1:11:1:130397257:1	21546010	21547067	R	olfactory receptor, family 6, subfamily X, member 1 [Source:HGNC Symbol;Acc:HGNC:14737]
ENSCJAG00000022105	KNOWN_BY_PROJECTION	protein_coding	OR6M1	chromosome:C_jacchus3.2.1:11:1:130397257:1	21600790	21601847	R	olfactory receptor, family 6, subfamily M, member 1 [Source:HGNC Symbol;Acc:HGNC:14711]
ENSCJAG00000007793	KNOWN_BY_PROJECTION	protein_coding	OR8D4	chromosome:C_jacchus3.2.1:11:1:130397257:1	21697151	21698211	D	olfactory receptor, family 8, subfamily D, member 4 [Source:HGNC Symbol;Acc:HGNC:14840]
ENSCJAG00000004047	KNOWN_BY_PROJECTION	protein_coding	TMEM53	chromosome:C_jacchus3.2.1:7:1:155834243:1	79407229	79413015	R	transmembrane protein 53 [Source:HGNC Symbol;Acc:HGNC:26186]
ENSCJAG00000022106	KNOWN_BY_PROJECTION	protein_coding	OR4D5	chromosome:C_jacchus3.2.1:11:1:130397257:1	21732727	21733821	D	olfactory receptor, family 4, subfamily D, member 5 [Source:HGNC Symbol;Acc:HGNC:14852]
ENSCJAG00000022107	KNOWN_BY_PROJECTION	protein_coding	OR6T1	chromosome:C_jacchus3.2.1:11:1:130397257:1	21735982	21737070	R	olfactory receptor, family 6, subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:14848]
ENSCJAG00000022108	KNOWN_BY_PROJECTION	protein_coding	OR10S1	chromosome:C_jacchus3.2.1:11:1:130397257:1	21767807	21768899	R	olfactory receptor, family 10, subfamily S, member 1 [Source:HGNC Symbol;Acc:HGNC:14807]
ENSCJAG00000022110	NOVEL	protein_coding	ENSCJAG00000022110	chromosome:C_jacchus3.2.1:11:1:130397257:1	21813663	21814601	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040769}  [Source:UniProtKB/TrEMBL;Acc:F7IT52]
ENSCJAG00000004070	KNOWN	protein_coding	C1ORF228	chromosome:C_jacchus3.2.1:7:1:155834243:1	79446401	79486421	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007413}; Uncharacterized protein C1orf228 {ECO:0000313|EMBL:JAB21435.1}  [Source:UniProtKB/TrEMBL;Acc:F6PI34]
ENSCJAG00000022111	NOVEL	protein_coding	ENSCJAG00000022111	chromosome:C_jacchus3.2.1:11:1:130397257:1	21820569	21821507	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040770}  [Source:UniProtKB/TrEMBL;Acc:F7IT41]
ENSCJAG00000022112	KNOWN_BY_PROJECTION	protein_coding	OR10G7	chromosome:C_jacchus3.2.1:11:1:130397257:1	21837528	21838463	R	olfactory receptor, family 10, subfamily G, member 7 [Source:HGNC Symbol;Acc:HGNC:14842]
ENSCJAG00000033753	NOVEL	protein_coding	ENSCJAG00000033753	chromosome:C_jacchus3.2.1:11:1:130397257:1	21851240	21852208	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049371}  [Source:UniProtKB/TrEMBL;Acc:F6XVJ8]
ENSCJAG00000007801	NOVEL	protein_coding	ENSCJAG00000007801	chromosome:C_jacchus3.2.1:11:1:130397257:1	21903823	21904746	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047267}  [Source:UniProtKB/TrEMBL;Acc:F7IFV4]
ENSCJAG00000032059	NOVEL	protein_coding	ENSCJAG00000032059	chromosome:C_jacchus3.2.1:11:1:130397257:1	22000594	22001460	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045717}  [Source:UniProtKB/TrEMBL;Acc:F6TE50]
ENSCJAG00000007876	KNOWN_BY_PROJECTION	protein_coding	OR10D3	chromosome:C_jacchus3.2.1:11:1:130397257:1	22009390	22010325	D	olfactory receptor, family 10, subfamily D, member 3 (non-functional) [Source:HGNC Symbol;Acc:HGNC:8168]
ENSCJAG00000022116	NOVEL	protein_coding	ENSCJAG00000022116	chromosome:C_jacchus3.2.1:11:1:130397257:1	22067329	22068258	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040775}  [Source:UniProtKB/TrEMBL;Acc:F7IQV0]
ENSCJAG00000007885	NOVEL	protein_coding	ENSCJAG00000007885	chromosome:C_jacchus3.2.1:11:1:130397257:1	22114582	22115514	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7IBJ4]
ENSCJAG00000007887	NOVEL	protein_coding	ENSCJAG00000007887	chromosome:C_jacchus3.2.1:11:1:130397257:1	22120640	22121572	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7IBI9]
ENSCJAG00000007890	NOVEL	protein_coding	ENSCJAG00000007890	chromosome:C_jacchus3.2.1:11:1:130397257:1	22136737	22137678	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I4I8]
ENSCJAG00000022117	KNOWN_BY_PROJECTION	protein_coding	OR8B8	chromosome:C_jacchus3.2.1:11:1:130397257:1	22186672	22187704	R	olfactory receptor, family 8, subfamily B, member 8 [Source:HGNC Symbol;Acc:HGNC:8477]
ENSCJAG00000022118	NOVEL	protein_coding	ENSCJAG00000022118	chromosome:C_jacchus3.2.1:11:1:130397257:1	22229712	22230197	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040777}  [Source:UniProtKB/TrEMBL;Acc:F7IQU7]
ENSCJAG00000022119	NOVEL	protein_coding	ENSCJAG00000022119	chromosome:C_jacchus3.2.1:11:1:130397257:1	26681836	26682108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040778}  [Source:UniProtKB/TrEMBL;Acc:F7IQU5]
ENSCJAG00000009281	NOVEL	protein_coding	ENSCJAG00000009281	chromosome:C_jacchus3.2.1:11:1:130397257:1	28104529	28104948	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045662}  [Source:UniProtKB/TrEMBL;Acc:F6Q1Y9]
ENSCJAG00000022120	NOVEL	protein_coding	ENSCJAG00000022120	chromosome:C_jacchus3.2.1:11:1:130397257:1	28134897	28135250	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040779}  [Source:UniProtKB/TrEMBL;Acc:F7IQU3]
ENSCJAG00000009433	NOVEL	protein_coding	ENSCJAG00000009433	chromosome:C_jacchus3.2.1:11:1:130397257:1	28224478	28225281	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017263}  [Source:UniProtKB/TrEMBL;Acc:F7HS91]
ENSCJAG00000022121	NOVEL	protein_coding	ENSCJAG00000022121	chromosome:C_jacchus3.2.1:11:1:130397257:1	28400796	28401263	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040780}  [Source:UniProtKB/TrEMBL;Acc:F7IQS9]
ENSCJAG00000034913	NOVEL	protein_coding	ENSCJAG00000034913	chromosome:C_jacchus3.2.1:11:1:130397257:1	32282581	32282787	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042980}  [Source:UniProtKB/TrEMBL;Acc:F6UF96]
ENSCJAG00000023319	KNOWN	protein_coding	KDM4D	chromosome:C_jacchus3.2.1:11:1:130397257:1	42768219	42770608	R	Lysine-specific demethylase 4D {ECO:0000313|EMBL:JAB27351.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041825}  [Source:UniProtKB/TrEMBL;Acc:F7E8N7]
ENSCJAG00000031996	NOVEL	protein_coding	ENSCJAG00000031996	chromosome:C_jacchus3.2.1:11:1:130397257:1	43661889	43662866	D	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}  [Source:UniProtKB/TrEMBL;Acc:F6UI74]
ENSCJAG00000022812	NOVEL	protein_coding	ENSCJAG00000022812	chromosome:C_jacchus3.2.1:11:1:130397257:1	44690867	44691043	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041393}  [Source:UniProtKB/TrEMBL;Acc:F7EAQ1]
ENSCJAG00000008525	KNOWN	protein_coding	BRINP2	chromosome:C_jacchus3.2.1:18:1:47448759:1	29738483	29851146	R	Protein FAM5B {ECO:0000313|EMBL:JAB22466.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015759}  [Source:UniProtKB/TrEMBL;Acc:F7DTI4]
ENSCJAG00000000504	KNOWN_BY_PROJECTION	protein_coding	LIG1	chromosome:C_jacchus3.2.1:22:1:49145316:1	39944420	40003812	D	ligase I, DNA, ATP-dependent [Source:HGNC Symbol;Acc:HGNC:6598]
ENSCJAG00000004086	KNOWN_BY_PROJECTION	protein_coding	KIF2C	chromosome:C_jacchus3.2.1:7:1:155834243:1	79499903	79530208	D	kinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]
ENSCJAG00000032975	NOVEL	protein_coding	ENSCJAG00000032975	chromosome:C_jacchus3.2.1:11:1:130397257:1	48818766	48819140	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005546}  [Source:UniProtKB/TrEMBL;Acc:F7IJH0]
ENSCJAG00000022170	NOVEL	protein_coding	ENSCJAG00000022170	chromosome:C_jacchus3.2.1:11:1:130397257:1	50597031	50597411	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040826}  [Source:UniProtKB/TrEMBL;Acc:F7IGD3]
ENSCJAG00000022169	NOVEL	protein_coding	ENSCJAG00000022169	chromosome:C_jacchus3.2.1:11:1:130397257:1	50864233	50864910	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040825}  [Source:UniProtKB/TrEMBL;Acc:F7IGD4]
ENSCJAG00000022079	NOVEL	protein_coding	ENSCJAG00000022079	chromosome:C_jacchus3.2.1:11:1:130397257:1	53496974	53497345	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040743}  [Source:UniProtKB/TrEMBL;Acc:F7HQ81]
ENSCJAG00000022080	NOVEL	protein_coding	ENSCJAG00000022080	chromosome:C_jacchus3.2.1:11:1:130397257:1	54132966	54134354	R	Elongation factor 1-alpha {ECO:0000256|RuleBase:RU004060}  [Source:UniProtKB/TrEMBL;Acc:F7HQ79]
ENSCJAG00000022082	NOVEL	protein_coding	ENSCJAG00000022082	chromosome:C_jacchus3.2.1:11:1:130397257:1	58872258	58872870	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040746}  [Source:UniProtKB/TrEMBL;Acc:F7HQ73]
ENSCJAG00000022083	NOVEL	protein_coding	ENSCJAG00000022083	chromosome:C_jacchus3.2.1:11:1:130397257:1	59615432	59615926	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040747}  [Source:UniProtKB/TrEMBL;Acc:F7HQ69]
ENSCJAG00000022084	NOVEL	protein_coding	ENSCJAG00000022084	chromosome:C_jacchus3.2.1:11:1:130397257:1	60059047	60059694	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040748}  [Source:UniProtKB/TrEMBL;Acc:F7HQ64]
ENSCJAG00000022086	NOVEL	protein_coding	ENSCJAG00000022086	chromosome:C_jacchus3.2.1:11:1:130397257:1	61376440	61377059	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040750}  [Source:UniProtKB/TrEMBL;Acc:F7IT97]
ENSCJAG00000015295	NOVEL	protein_coding	ENSCJAG00000015295	chromosome:C_jacchus3.2.1:11:1:130397257:1	62389688	62392038	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028155}  [Source:UniProtKB/TrEMBL;Acc:F7A740]
ENSCJAG00000012436	NOVEL	processed_pseudogene	ENSCJAG00000012436	chromosome:C_jacchus3.2.1:11:1:130397257:1	9958182	9959546	D	<no descrition>
ENSCJAG00000022971	NOVEL	processed_pseudogene	ENSCJAG00000022971	chromosome:C_jacchus3.2.1:11:1:130397257:1	16113291	16113671	R	<no descrition>
ENSCJAG00000023046	NOVEL	processed_pseudogene	ENSCJAG00000023046	chromosome:C_jacchus3.2.1:11:1:130397257:1	16424355	16424987	D	<no descrition>
ENSCJAG00000023196	NOVEL	processed_pseudogene	ENSCJAG00000023196	chromosome:C_jacchus3.2.1:11:1:130397257:1	36291696	36291998	D	<no descrition>
ENSCJAG00000023346	NOVEL	processed_pseudogene	ENSCJAG00000023346	chromosome:C_jacchus3.2.1:11:1:130397257:1	42481672	42481863	D	<no descrition>
ENSCJAG00000020391	KNOWN	protein_coding	ENTPD5	chromosome:C_jacchus3.2.1:10:1:132174527:1	99227947	99282293	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037928}  [Source:UniProtKB/TrEMBL;Acc:F6VVW0]
ENSCJAG00000022139	NOVEL	protein_coding	ENSCJAG00000022139	chromosome:C_jacchus3.2.1:6:1:158406734:1	24094082	24094626	R	Cytochrome c oxidase subunit 6A, mitochondrial {ECO:0000256|RuleBase:RU004397}  [Source:UniProtKB/TrEMBL;Acc:F7IQQ2]
ENSCJAG00000022152	NOVEL	protein_coding	ENSCJAG00000022152	chromosome:C_jacchus3.2.1:6:1:158406734:1	25854688	25855191	D	<no descrition>
ENSCJAG00000022138	NOVEL	protein_coding	ENSCJAG00000022138	chromosome:C_jacchus3.2.1:6:1:158406734:1	25926936	25927429	D	<no descrition>
ENSCJAG00000023207	KNOWN_BY_PROJECTION	protein_coding	RHOG	chromosome:C_jacchus3.2.1:6:1:158406734:1	26811763	26812338	D	ras homolog family member G [Source:HGNC Symbol;Acc:HGNC:672]
ENSCJAG00000022397	KNOWN_BY_PROJECTION	protein_coding	SFT2D3	chromosome:C_jacchus3.2.1:6:1:158406734:1	31555723	31556133	R	SFT2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28767]
ENSCJAG00000031747	NOVEL	protein_coding	ENSCJAG00000031747	chromosome:C_jacchus3.2.1:6:1:158406734:1	31585156	31585278	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044654}  [Source:UniProtKB/TrEMBL;Acc:F7HGU5]
ENSCJAG00000032146	NOVEL	protein_coding	ENSCJAG00000032146	chromosome:C_jacchus3.2.1:6:1:158406734:1	33843863	33844180	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047612}  [Source:UniProtKB/TrEMBL;Acc:F7H7U7]
ENSCJAG00000022813	KNOWN	protein_coding	SNRPD2	chromosome:C_jacchus3.2.1:6:1:158406734:1	35335107	35335587	D	Small nuclear ribonucleoprotein Sm D2 isoform 1 {ECO:0000313|EMBL:JAB26852.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041394}  [Source:UniProtKB/TrEMBL;Acc:F7EAP7]
ENSCJAG00000020404	KNOWN_BY_PROJECTION	protein_coding	CCDC176	chromosome:C_jacchus3.2.1:10:1:132174527:1	99285167	99334009	D	coiled-coil domain containing 176 [Source:HGNC Symbol;Acc:HGNC:19855]
ENSCJAG00000022814	NOVEL	protein_coding	ENSCJAG00000022814	chromosome:C_jacchus3.2.1:6:1:158406734:1	36791678	36792061	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041395}  [Source:UniProtKB/TrEMBL;Acc:F7EAP3]
ENSCJAG00000022005	KNOWN	protein_coding	EIF1AY	chromosome:C_jacchus3.2.1:6:1:158406734:1	37878878	37879312	R	eukaryotic translation initiation factor 1A, Y-chromosomal  [Source:RefSeq peptide;Acc:NP_001254693]
ENSCJAG00000019536	NOVEL	pseudogene	ENSCJAG00000019536	chromosome:C_jacchus3.2.1:4:1:171630274:1	148252599	148253067	D	<no descrition>
ENSCJAG00000000120	NOVEL	protein_coding	ENSCJAG00000000120	chromosome:C_jacchus3.2.1:4:1:171630274:1	149046448	149060792	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000195}  [Source:UniProtKB/TrEMBL;Acc:F7D9S1]
ENSCJAG00000032407	NOVEL	protein_coding	ENSCJAG00000032407	chromosome:C_jacchus3.2.1:6:1:158406734:1	42098035	42098523	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047539}  [Source:UniProtKB/TrEMBL;Acc:F7EH04]
ENSCJAG00000022954	NOVEL	protein_coding	ENSCJAG00000022954	chromosome:C_jacchus3.2.1:6:1:158406734:1	43131632	43132117	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042324}  [Source:UniProtKB/TrEMBL;Acc:F6WC44]
ENSCJAG00000006367	NOVEL	protein_coding	ENSCJAG00000006367	chromosome:C_jacchus3.2.1:4:1:171630274:1	149058236	149090067	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011737}  [Source:UniProtKB/TrEMBL;Acc:F7GCR8]
ENSCJAG00000022940	NOVEL	protein_coding	ENSCJAG00000022940	chromosome:C_jacchus3.2.1:6:1:158406734:1	47694982	47695300	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041501}  [Source:UniProtKB/TrEMBL;Acc:F7GPP2]
ENSCJAG00000022939	NOVEL	protein_coding	ENSCJAG00000022939	chromosome:C_jacchus3.2.1:6:1:158406734:1	47957884	47958510	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041500}  [Source:UniProtKB/TrEMBL;Acc:F7GPP5]
ENSCJAG00000022938	NOVEL	protein_coding	ENSCJAG00000022938	chromosome:C_jacchus3.2.1:6:1:158406734:1	48909748	48910176	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041499}  [Source:UniProtKB/TrEMBL;Acc:F7GZZ3]
ENSCJAG00000022937	NOVEL	protein_coding	ENSCJAG00000022937	chromosome:C_jacchus3.2.1:6:1:158406734:1	49508411	49509756	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041498}  [Source:UniProtKB/TrEMBL;Acc:F7GZZ5]
ENSCJAG00000004197	KNOWN_BY_PROJECTION	protein_coding	RPS8	chromosome:C_jacchus3.2.1:7:1:155834243:1	79541054	79544927	D	ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
ENSCJAG00000022908	KNOWN_BY_PROJECTION	protein_coding	MYL6	chromosome:C_jacchus3.2.1:6:1:158406734:1	51848539	51849178	R	myosin, light chain 6, alkali, smooth muscle and non-muscle [Source:HGNC Symbol;Acc:HGNC:7587]
ENSCJAG00000022907	NOVEL	protein_coding	ENSCJAG00000022907	chromosome:C_jacchus3.2.1:6:1:158406734:1	58030554	58031553	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041468}  [Source:UniProtKB/TrEMBL;Acc:F7H596]
ENSCJAG00000019537	KNOWN_BY_PROJECTION	protein_coding	SASH1	chromosome:C_jacchus3.2.1:4:1:171630274:1	149109257	149329092	D	SAM and SH3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19182]
ENSCJAG00000004212	KNOWN_BY_PROJECTION	protein_coding	BEST4	chromosome:C_jacchus3.2.1:7:1:155834243:1	79550228	79554123	R	bestrophin 4 [Source:HGNC Symbol;Acc:HGNC:17106]
ENSCJAG00000008558	KNOWN_BY_PROJECTION	protein_coding	ASTN1	chromosome:C_jacchus3.2.1:18:1:47448759:1	29961290	30175674	D	astrotactin 1 [Source:HGNC Symbol;Acc:HGNC:773]
ENSCJAG00000004232	KNOWN	protein_coding	PLK3	chromosome:C_jacchus3.2.1:7:1:155834243:1	79566249	79571560	D	Serine/threonine-protein kinase PLK {ECO:0000256|RuleBase:RU361162}  [Source:UniProtKB/TrEMBL;Acc:F6XJB8]
ENSCJAG00000000489	KNOWN_BY_PROJECTION	protein_coding	CARD8	chromosome:C_jacchus3.2.1:22:1:49145316:1	39999152	40189654	D	caspase recruitment domain family, member 8 [Source:HGNC Symbol;Acc:HGNC:17057]
ENSCJAG00000000503	NOVEL	protein_coding	ENSCJAG00000000503	chromosome:C_jacchus3.2.1:22:1:49145316:1	40025104	40029140	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047502}  [Source:UniProtKB/TrEMBL;Acc:F7I696]
ENSCJAG00000023131	NOVEL	protein_coding	ENSCJAG00000023131	chromosome:C_jacchus3.2.1:6:1:158406734:1	60834324	60834635	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041659}  [Source:UniProtKB/TrEMBL;Acc:F7HFG0]
ENSCJAG00000023132	NOVEL	protein_coding	ENSCJAG00000023132	chromosome:C_jacchus3.2.1:6:1:158406734:1	63593791	63594279	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041660}  [Source:UniProtKB/TrEMBL;Acc:F7HFC1]
ENSCJAG00000023133	KNOWN_BY_PROJECTION	protein_coding	RPRM	chromosome:C_jacchus3.2.1:6:1:158406734:1	65840324	65841773	D	reprimo, TP53 dependent G2 arrest mediator candidate [Source:HGNC Symbol;Acc:HGNC:24201]
ENSCJAG00000004296	KNOWN	protein_coding	BTBD19	chromosome:C_jacchus3.2.1:7:1:155834243:1	79574109	79579894	D	BTB/POZ domain-containing protein 19 {ECO:0000313|EMBL:JAB12937.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007773}  [Source:UniProtKB/TrEMBL;Acc:F6WY22]
ENSCJAG00000022755	KNOWN_BY_PROJECTION	protein_coding	RPL23A	chromosome:C_jacchus3.2.1:6:1:158406734:1	71697473	71698009	R	ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
ENSCJAG00000020412	KNOWN	protein_coding	ALDH6A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	99328050	99354522	R	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial {ECO:0000313|EMBL:JAB05871.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037972}  [Source:UniProtKB/TrEMBL;Acc:F7CA96]
ENSCJAG00000022844	NOVEL	protein_coding	ENSCJAG00000022844	chromosome:C_jacchus3.2.1:6:1:158406734:1	75155193	75155510	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041425}  [Source:UniProtKB/TrEMBL;Acc:F7HFY7]
ENSCJAG00000022843	NOVEL	protein_coding	ENSCJAG00000022843	chromosome:C_jacchus3.2.1:6:1:158406734:1	78124639	78124773	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041424}  [Source:UniProtKB/TrEMBL;Acc:F7CW02]
ENSCJAG00000022842	NOVEL	protein_coding	ENSCJAG00000022842	chromosome:C_jacchus3.2.1:6:1:158406734:1	84473664	84474455	R	40S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116}  [Source:UniProtKB/TrEMBL;Acc:F7CW10]
ENSCJAG00000022841	NOVEL	protein_coding	ENSCJAG00000022841	chromosome:C_jacchus3.2.1:6:1:158406734:1	86392743	86393062	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041422}  [Source:UniProtKB/TrEMBL;Acc:F7CW20]
ENSCJAG00000023037	KNOWN	protein_coding	TMEM185B	chromosome:C_jacchus3.2.1:6:1:158406734:1	94267340	94269311	R	Callithrix jacchus transmembrane protein 185B (TMEM185B), mRNA. [Source:RefSeq mRNA;Acc:NM_001242325]
ENSCJAG00000023038	NOVEL	protein_coding	ENSCJAG00000023038	chromosome:C_jacchus3.2.1:6:1:158406734:1	95692907	95693692	D	40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}  [Source:UniProtKB/TrEMBL;Acc:F7F1T0]
ENSCJAG00000000500	NOVEL	protein_coding	ENSCJAG00000000500	chromosome:C_jacchus3.2.1:22:1:49145316:1	40062051	40063707	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000856}  [Source:UniProtKB/TrEMBL;Acc:F6PMY9]
ENSCJAG00000034750	NOVEL	protein_coding	ENSCJAG00000034750	chromosome:C_jacchus3.2.1:22:1:49145316:1	40116762	40118456	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051328}  [Source:UniProtKB/TrEMBL;Acc:F6Z1P9]
ENSCJAG00000004303	KNOWN_BY_PROJECTION	protein_coding	PTCH2	chromosome:C_jacchus3.2.1:7:1:155834243:1	79586709	79612578	R	patched 2 [Source:HGNC Symbol;Acc:HGNC:9586]
ENSCJAG00000000486	KNOWN	protein_coding	CCDC114	chromosome:C_jacchus3.2.1:22:1:49145316:1	40203375	40228824	R	Coiled-coil domain-containing protein 114 isoform 2 {ECO:0000313|EMBL:JAB18813.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000828}  [Source:UniProtKB/TrEMBL;Acc:F6PY77]
ENSCJAG00000000482	KNOWN	protein_coding	EMP3	chromosome:C_jacchus3.2.1:22:1:49145316:1	40233251	40238542	D	Epithelial membrane protein 3 {ECO:0000313|EMBL:JAB03961.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000822}  [Source:UniProtKB/TrEMBL;Acc:F6PYE2]
ENSCJAG00000020436	KNOWN	protein_coding	LIN52	chromosome:C_jacchus3.2.1:10:1:132174527:1	99354981	99481398	D	Protein lin-52 homolog {ECO:0000313|EMBL:JAB01677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037978}  [Source:UniProtKB/TrEMBL;Acc:F7CA58]
ENSCJAG00000004386	KNOWN	protein_coding	EIF2B3	chromosome:C_jacchus3.2.1:7:1:155834243:1	79621209	79756536	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008024}  [Source:UniProtKB/TrEMBL;Acc:F6ZTB2]
ENSCJAG00000000479	KNOWN_BY_PROJECTION	protein_coding	TMEM143	chromosome:C_jacchus3.2.1:22:1:49145316:1	40240335	40270073	R	transmembrane protein 143 [Source:HGNC Symbol;Acc:HGNC:25603]
ENSCJAG00000035198	NOVEL	protein_coding	ENSCJAG00000035198	chromosome:C_jacchus3.2.1:4:1:171630274:1	149160331	149170870	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014437}  [Source:UniProtKB/TrEMBL;Acc:F7HZX6]
ENSCJAG00000031400	NOVEL	pseudogene	ENSCJAG00000031400	chromosome:C_jacchus3.2.1:7:1:155834243:1	79757378	79757859	R	<no descrition>
ENSCJAG00000019562	KNOWN	protein_coding	UST	chromosome:C_jacchus3.2.1:4:1:171630274:1	149510418	149983619	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048025}; Uronyl 2-sulfotransferase {ECO:0000313|EMBL:JAB12185.1}  [Source:UniProtKB/TrEMBL;Acc:F7GF60]
ENSCJAG00000004440	KNOWN	protein_coding	HECTD3	chromosome:C_jacchus3.2.1:7:1:155834243:1	79768714	79776568	R	E3 ubiquitin-protein ligase HECTD3 {ECO:0000313|EMBL:JAB09749.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008128}  [Source:UniProtKB/TrEMBL;Acc:F7HUB2]
ENSCJAG00000020442	KNOWN_BY_PROJECTION	protein_coding	VSX2	chromosome:C_jacchus3.2.1:10:1:132174527:1	99526604	99729155	D	visual system homeobox 2 [Source:HGNC Symbol;Acc:HGNC:1975]
ENSCJAG00000019579	NOVEL	pseudogene	ENSCJAG00000019579	chromosome:C_jacchus3.2.1:4:1:171630274:1	149899166	149899574	D	<no descrition>
ENSCJAG00000019580	KNOWN	protein_coding	TAB2	chromosome:C_jacchus3.2.1:4:1:171630274:1	149978163	150177405	D	TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 {ECO:0000313|EMBL:JAB04482.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036388}  [Source:UniProtKB/TrEMBL;Acc:F7GE66]
ENSCJAG00000000478	KNOWN_BY_PROJECTION	protein_coding	SYNGR4	chromosome:C_jacchus3.2.1:22:1:49145316:1	40270533	40285892	D	synaptogyrin 4 [Source:HGNC Symbol;Acc:HGNC:11502]
ENSCJAG00000004492	KNOWN_BY_PROJECTION	protein_coding	UROD	chromosome:C_jacchus3.2.1:7:1:155834243:1	79777459	79780951	D	uroporphyrinogen decarboxylase [Source:HGNC Symbol;Acc:HGNC:12591]
ENSCJAG00000000475	KNOWN	protein_coding	KDELR1	chromosome:C_jacchus3.2.1:22:1:49145316:1	40289631	40306269	R	ER lumen protein-retaining receptor {ECO:0000256|RuleBase:RU000634}  [Source:UniProtKB/TrEMBL;Acc:F6Q887]
ENSCJAG00000020446	KNOWN	protein_coding	ABCD4	chromosome:C_jacchus3.2.1:10:1:132174527:1	99562577	99580381	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038027}  [Source:UniProtKB/TrEMBL;Acc:F7HR48]
ENSCJAG00000004596	KNOWN_BY_PROJECTION	protein_coding	ZSWIM5	chromosome:C_jacchus3.2.1:7:1:155834243:1	79783740	80003027	R	zinc finger, SWIM-type containing 5 [Source:HGNC Symbol;Acc:HGNC:29299]
ENSCJAG00000004647	NOVEL	pseudogene	ENSCJAG00000004647	chromosome:C_jacchus3.2.1:7:1:155834243:1	80053944	80054485	D	<no descrition>
ENSCJAG00000000450	KNOWN_BY_PROJECTION	protein_coding	GRIN2D	chromosome:C_jacchus3.2.1:22:1:49145316:1	40311102	40369323	D	glutamate receptor, ionotropic, N-methyl D-aspartate 2D [Source:HGNC Symbol;Acc:HGNC:4588]
ENSCJAG00000032986	NOVEL	pseudogene	ENSCJAG00000032986	chromosome:C_jacchus3.2.1:4:1:171630274:1	150066903	150067270	R	<no descrition>
ENSCJAG00000019606	KNOWN_BY_PROJECTION	protein_coding	ZC3H12D	chromosome:C_jacchus3.2.1:4:1:171630274:1	150231028	150270034	R	zinc finger CCCH-type containing 12D [Source:HGNC Symbol;Acc:HGNC:21175]
ENSCJAG00000019613	KNOWN_BY_PROJECTION	protein_coding	PPIL4	chromosome:C_jacchus3.2.1:4:1:171630274:1	150289017	150345134	R	peptidylprolyl isomerase (cyclophilin)-like 4 [Source:HGNC Symbol;Acc:HGNC:15702]
ENSCJAG00000004634	KNOWN_BY_PROJECTION	protein_coding	MUTYH	chromosome:C_jacchus3.2.1:7:1:155834243:1	80149991	80163453	R	mutY homolog [Source:HGNC Symbol;Acc:HGNC:7527]
ENSCJAG00000000440	KNOWN	protein_coding	GRWD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	40370227	40432996	D	Glutamate-rich WD repeat-containing protein 1 {ECO:0000313|EMBL:JAB02674.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000758}  [Source:UniProtKB/TrEMBL;Acc:F6S353]
ENSCJAG00000019634	KNOWN	protein_coding	GINM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	150362308	150383033	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036448}  [Source:UniProtKB/TrEMBL;Acc:F7DPI2]
ENSCJAG00000000396	KNOWN	protein_coding	KCNJ14	chromosome:C_jacchus3.2.1:22:1:49145316:1	40379901	40392899	D	ATP-sensitive inward rectifier potassium channel 14 {ECO:0000313|EMBL:JAB19955.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000665}  [Source:UniProtKB/TrEMBL;Acc:F6Q9X4]
ENSCJAG00000000408	KNOWN_BY_PROJECTION	protein_coding	CYTH2	chromosome:C_jacchus3.2.1:22:1:49145316:1	40398029	40408265	D	cytohesin 2 [Source:HGNC Symbol;Acc:HGNC:9502]
ENSCJAG00000020468	KNOWN_BY_PROJECTION	protein_coding	VRTN	chromosome:C_jacchus3.2.1:10:1:132174527:1	99616273	99626361	D	vertebrae development associated [Source:HGNC Symbol;Acc:HGNC:20223]
ENSCJAG00000004716	KNOWN	protein_coding	TOE1	chromosome:C_jacchus3.2.1:7:1:155834243:1	80162663	80167007	D	Target of EGR1 protein 1 {ECO:0000313|EMBL:JAB34918.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008633}  [Source:UniProtKB/TrEMBL;Acc:F7IFC9]
ENSCJAG00000020470	NOVEL	pseudogene	ENSCJAG00000020470	chromosome:C_jacchus3.2.1:10:1:132174527:1	99629762	99631350	D	<no descrition>
ENSCJAG00000020474	KNOWN	protein_coding	SYNDIG1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	99667373	99688426	R	Synapse differentiation-inducing gene protein 1-like {ECO:0000313|EMBL:JAB13424.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038042}  [Source:UniProtKB/TrEMBL;Acc:F7HKE0]
ENSCJAG00000020476	KNOWN_BY_PROJECTION	protein_coding	NPC2	chromosome:C_jacchus3.2.1:10:1:132174527:1	99736958	99755601	R	Niemann-Pick disease, type C2 [Source:HGNC Symbol;Acc:HGNC:14537]
ENSCJAG00000010221	KNOWN_BY_PROJECTION	protein_coding	ZNF736	chromosome:C_jacchus3.2.1:2:1:204313951:1	348458	540440	D	zinc finger protein 736 [Source:HGNC Symbol;Acc:HGNC:32467]
ENSCJAG00000015228	NOVEL	protein_coding	ENSCJAG00000015228	chromosome:C_jacchus3.2.1:2:1:204313951:1	486740	748414	D	<no descrition>
ENSCJAG00000019639	NOVEL	pseudogene	ENSCJAG00000019639	chromosome:C_jacchus3.2.1:4:1:171630274:1	150375550	150376030	R	<no descrition>
ENSCJAG00000019640	KNOWN	protein_coding	KATNA1	chromosome:C_jacchus3.2.1:4:1:171630274:1	150385277	150425505	R	Katanin p60 ATPase-containing subunit A1 {ECO:0000256|HAMAP-Rule:MF_03023}  [Source:UniProtKB/TrEMBL;Acc:F7HIN0]
ENSCJAG00000020479	KNOWN	protein_coding	ISCA2	chromosome:C_jacchus3.2.1:10:1:132174527:1	99755965	99757774	D	Iron-sulfur cluster assembly 2 homolog, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB05667.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038047}  [Source:UniProtKB/TrEMBL;Acc:F7HKC4]
ENSCJAG00000004755	KNOWN	protein_coding	TESK2	chromosome:C_jacchus3.2.1:7:1:155834243:1	80166903	80340544	R	Dual specificity testis-specific protein kinase 2 {ECO:0000313|EMBL:JAB05428.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008740}  [Source:UniProtKB/TrEMBL;Acc:F7HMD2]
ENSCJAG00000020480	KNOWN_BY_PROJECTION	protein_coding	LTBP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	99762039	99882780	R	latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
ENSCJAG00000033954	NOVEL	protein_coding	ENSCJAG00000033954	chromosome:C_jacchus3.2.1:2:1:204313951:1	654747	817481	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013941}  [Source:UniProtKB/TrEMBL;Acc:F6X215]
ENSCJAG00000010257	KNOWN_BY_PROJECTION	protein_coding	ZNF92	chromosome:C_jacchus3.2.1:2:1:204313951:1	877704	886946	D	zinc finger protein 92 [Source:HGNC Symbol;Acc:HGNC:13168]
ENSCJAG00000010261	NOVEL	protein_coding	ENSCJAG00000010261	chromosome:C_jacchus3.2.1:2:1:204313951:1	945739	947831	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018908}  [Source:UniProtKB/TrEMBL;Acc:F7H5H4]
ENSCJAG00000004198	KNOWN	protein_coding	TPST1	chromosome:C_jacchus3.2.1:2:1:204313951:1	959561	1105714	R	Protein-tyrosine sulfotransferase 1 {ECO:0000313|EMBL:JAB04678.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007625}  [Source:UniProtKB/TrEMBL;Acc:F6PPZ3]
ENSCJAG00000004805	KNOWN	protein_coding	MMACHC	chromosome:C_jacchus3.2.1:7:1:155834243:1	80349256	80361823	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008753}  [Source:UniProtKB/TrEMBL;Acc:F7HMA7]
ENSCJAG00000004807	KNOWN	protein_coding	PRDX1	chromosome:C_jacchus3.2.1:7:1:155834243:1	80361794	80372483	R	Peroxiredoxin-1 {ECO:0000313|EMBL:JAB20915.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008808}  [Source:UniProtKB/TrEMBL;Acc:F7IHK8]
ENSCJAG00000000403	NOVEL	pseudogene	ENSCJAG00000000403	chromosome:C_jacchus3.2.1:22:1:49145316:1	40410791	40410915	D	<no descrition>
ENSCJAG00000000398	KNOWN_BY_PROJECTION	protein_coding	LMTK3	chromosome:C_jacchus3.2.1:22:1:49145316:1	40418866	40439869	R	lemur tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:19295]
ENSCJAG00000000388	KNOWN_BY_PROJECTION	protein_coding	SULT2B1	chromosome:C_jacchus3.2.1:22:1:49145316:1	40478419	40530776	D	sulfotransferase family, cytosolic, 2B, member 1 [Source:HGNC Symbol;Acc:HGNC:11459]
ENSCJAG00000004225	KNOWN	protein_coding	CRCP	chromosome:C_jacchus3.2.1:2:1:204313951:1	1179908	1223601	R	DNA-directed RNA polymerase III subunit RPC9 isoform a {ECO:0000313|EMBL:JAB01631.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007660}  [Source:UniProtKB/TrEMBL;Acc:F6TNU3]
ENSCJAG00000000384	KNOWN_BY_PROJECTION	protein_coding	FAM83E	chromosome:C_jacchus3.2.1:22:1:49145316:1	40532452	40547544	R	family with sequence similarity 83, member E [Source:HGNC Symbol;Acc:HGNC:25972]
ENSCJAG00000000377	KNOWN_BY_PROJECTION	protein_coding	RPL18	chromosome:C_jacchus3.2.1:22:1:49145316:1	40549386	40553029	R	ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:10310]
ENSCJAG00000004234	KNOWN_BY_PROJECTION	protein_coding	ASL	chromosome:C_jacchus3.2.1:2:1:204313951:1	1238777	1257135	D	argininosuccinate lyase [Source:HGNC Symbol;Acc:HGNC:746]
ENSCJAG00000000366	KNOWN	protein_coding	SPHK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	40553206	40563461	D	Sphingosine kinase 2 isoform a {ECO:0000313|EMBL:JAB30525.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000625}  [Source:UniProtKB/TrEMBL;Acc:F6QLG0]
ENSCJAG00000013633	KNOWN_BY_PROJECTION	protein_coding	AKR1A1	chromosome:C_jacchus3.2.1:7:1:155834243:1	80418507	80439659	D	aldo-keto reductase family 1, member A1 (aldehyde reductase) [Source:HGNC Symbol;Acc:HGNC:380]
ENSCJAG00000009197	KNOWN	protein_coding	LATS1	chromosome:C_jacchus3.2.1:4:1:171630274:1	150457008	150506801	R	Serine/threonine-protein kinase LATS1 isoform 1 {ECO:0000313|EMBL:JAB15767.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016865}  [Source:UniProtKB/TrEMBL;Acc:F6WQH6]
ENSCJAG00000009221	KNOWN_BY_PROJECTION	protein_coding	NUP43	chromosome:C_jacchus3.2.1:4:1:171630274:1	150509104	150535872	R	nucleoporin 43kDa [Source:HGNC Symbol;Acc:HGNC:21182]
ENSCJAG00000009230	KNOWN	protein_coding	PCMT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	150538940	150592496	D	Protein-L-isoaspartate O-methyltransferase {ECO:0000256|RuleBase:RU003802}  [Source:UniProtKB/TrEMBL;Acc:F7BKY4]
ENSCJAG00000013641	KNOWN	protein_coding	NASP	chromosome:C_jacchus3.2.1:7:1:155834243:1	80451072	80498459	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047278}  [Source:UniProtKB/TrEMBL;Acc:F7IDI7]
ENSCJAG00000000281	KNOWN_BY_PROJECTION	protein_coding	PLEKHA4	chromosome:C_jacchus3.2.1:22:1:49145316:1	40557401	40772749	R	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 [Source:HGNC Symbol;Acc:HGNC:14339]
ENSCJAG00000000360	KNOWN_BY_PROJECTION	protein_coding	DBP	chromosome:C_jacchus3.2.1:22:1:49145316:1	40563039	40571415	R	D site of albumin promoter (albumin D-box) binding protein [Source:HGNC Symbol;Acc:HGNC:2697]
ENSCJAG00000000345	KNOWN	protein_coding	CA11	chromosome:C_jacchus3.2.1:22:1:49145316:1	40571907	40580646	R	Carbonic anhydrase-related protein 11 {ECO:0000313|EMBL:JAB02778.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000595}  [Source:UniProtKB/TrEMBL;Acc:F7GMD1]
ENSCJAG00000009284	KNOWN_BY_PROJECTION	protein_coding	LRP11	chromosome:C_jacchus3.2.1:4:1:171630274:1	150601426	150652740	R	low density lipoprotein receptor-related protein 11 [Source:HGNC Symbol;Acc:HGNC:16936]
ENSCJAG00000033759	KNOWN	protein_coding	GUSB	chromosome:C_jacchus3.2.1:2:1:204313951:1	1273533	1287721	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047402}  [Source:UniProtKB/TrEMBL;Acc:F7IQ41]
ENSCJAG00000021540	KNOWN_BY_PROJECTION	protein_coding	RAET1E	chromosome:C_jacchus3.2.1:4:1:171630274:1	150667464	150674099	R	retinoic acid early transcript 1E [Source:HGNC Symbol;Acc:HGNC:16793]
ENSCJAG00000004243	KNOWN	protein_coding	VKORC1L1	chromosome:C_jacchus3.2.1:2:1:204313951:1	1293695	1299175	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007680}  [Source:UniProtKB/TrEMBL;Acc:F6TBW3]
ENSCJAG00000004245	KNOWN_BY_PROJECTION	protein_coding	KCTD7	chromosome:C_jacchus3.2.1:2:1:204313951:1	1482501	1495999	D	potassium channel tetramerization domain containing 7 [Source:HGNC Symbol;Acc:HGNC:21957]
ENSCJAG00000004248	NOVEL	protein_coding	ENSCJAG00000004248	chromosome:C_jacchus3.2.1:2:1:204313951:1	1513483	1514103	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007688}  [Source:UniProtKB/TrEMBL;Acc:F6T2F9]
ENSCJAG00000004252	KNOWN	protein_coding	RABGEF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	1524525	1583741	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007715}  [Source:UniProtKB/TrEMBL;Acc:F6Y8F7]
ENSCJAG00000020497	KNOWN	protein_coding	AREL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	99924983	99982862	R	Protein KIAA0317 {ECO:0000313|EMBL:JAB01929.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038127}  [Source:UniProtKB/TrEMBL;Acc:F7I9K1]
ENSCJAG00000004275	NOVEL	protein_coding	ENSCJAG00000004275	chromosome:C_jacchus3.2.1:2:1:204313951:1	1560389	1561159	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007735}  [Source:UniProtKB/TrEMBL;Acc:F6XKT0]
ENSCJAG00000004278	KNOWN	protein_coding	TMEM248	chromosome:C_jacchus3.2.1:2:1:204313951:1	1594457	1630938	D	Transmembrane protein 248 {ECO:0000313|EMBL:JAB08428.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007739}  [Source:UniProtKB/TrEMBL;Acc:F6XKP9]
ENSCJAG00000000341	KNOWN_BY_PROJECTION	protein_coding	NTN5	chromosome:C_jacchus3.2.1:22:1:49145316:1	40591753	40606356	R	netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
ENSCJAG00000036680	NOVEL	protein_coding	ENSCJAG00000036680	chromosome:C_jacchus3.2.1:22:1:49145316:1	40593303	40609587	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049156}  [Source:UniProtKB/TrEMBL;Acc:F7AI46]
ENSCJAG00000023164	KNOWN	protein_coding	FUT2	chromosome:C_jacchus3.2.1:22:1:49145316:1	40615219	40633152	D	Galactoside 2-alpha-L-fucosyltransferase 2 {ECO:0000313|EMBL:JAB01838.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041686}  [Source:UniProtKB/TrEMBL;Acc:F7HA38]
ENSCJAG00000004283	KNOWN	protein_coding	SBDS	chromosome:C_jacchus3.2.1:2:1:204313951:1	1641400	1648591	R	Ribosome maturation protein SBDS {ECO:0000313|EMBL:JAB09010.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045435}  [Source:UniProtKB/TrEMBL;Acc:F6QRM2]
ENSCJAG00000000326	KNOWN_BY_PROJECTION	protein_coding	MAMSTR	chromosome:C_jacchus3.2.1:22:1:49145316:1	40641054	40648334	R	MEF2 activating motif and SAP domain containing transcriptional regulator [Source:HGNC Symbol;Acc:HGNC:26689]
ENSCJAG00000021539	NOVEL	protein_coding	ENSCJAG00000021539	chromosome:C_jacchus3.2.1:4:1:171630274:1	150688129	150689929	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040106}  [Source:UniProtKB/TrEMBL;Acc:F7I528]
ENSCJAG00000013455	NOVEL	protein_coding	ENSCJAG00000013455	chromosome:C_jacchus3.2.1:4:1:171630274:1	150718090	150880844	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024727}  [Source:UniProtKB/TrEMBL;Acc:F6RSN4]
ENSCJAG00000013712	KNOWN_BY_PROJECTION	protein_coding	CCDC17	chromosome:C_jacchus3.2.1:7:1:155834243:1	80500100	80503961	R	coiled-coil domain containing 17 [Source:HGNC Symbol;Acc:HGNC:26574]
ENSCJAG00000036082	KNOWN_BY_PROJECTION	protein_coding	ULBP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	150720001	150772797	R	UL16 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:14893]
ENSCJAG00000035092	NOVEL	protein_coding	ENSCJAG00000035092	chromosome:C_jacchus3.2.1:4:1:171630274:1	150751036	150752604	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024732}  [Source:UniProtKB/TrEMBL;Acc:F6RRN9]
ENSCJAG00000013466	NOVEL	protein_coding	ENSCJAG00000013466	chromosome:C_jacchus3.2.1:4:1:171630274:1	150790495	150795368	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024742}  [Source:UniProtKB/TrEMBL;Acc:F6RFY1]
ENSCJAG00000013469	NOVEL	protein_coding	ENSCJAG00000013469	chromosome:C_jacchus3.2.1:4:1:171630274:1	150834343	150839480	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024730}  [Source:UniProtKB/TrEMBL;Acc:F6RRQ7]
ENSCJAG00000013727	KNOWN	protein_coding	GPBP1L1	chromosome:C_jacchus3.2.1:7:1:155834243:1	80505572	80566286	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025330}; Vasculin-like protein 1 {ECO:0000313|EMBL:JAB10898.1}  [Source:UniProtKB/TrEMBL;Acc:F7BI67]
ENSCJAG00000013465	NOVEL	protein_coding	ENSCJAG00000013465	chromosome:C_jacchus3.2.1:4:1:171630274:1	150876086	150876869	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024729}  [Source:UniProtKB/TrEMBL;Acc:F6RSL6]
ENSCJAG00000013452	KNOWN	protein_coding	PPP1R14C	chromosome:C_jacchus3.2.1:4:1:171630274:1	150946578	151062182	D	Protein phosphatase 1 regulatory subunit 14C {ECO:0000313|EMBL:JAB32179.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024704}  [Source:UniProtKB/TrEMBL;Acc:F6S3F2]
ENSCJAG00000037246	NOVEL	protein_coding	ENSCJAG00000037246	chromosome:C_jacchus3.2.1:10:1:132174527:1	99962614	99982797	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038084}  [Source:UniProtKB/TrEMBL;Acc:F7ILE1]
ENSCJAG00000000320	KNOWN_BY_PROJECTION	protein_coding	RASIP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	40649179	40667455	R	Ras interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:24716]
ENSCJAG00000013438	KNOWN_BY_PROJECTION	protein_coding	IYD	chromosome:C_jacchus3.2.1:4:1:171630274:1	151186335	151213320	D	iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
ENSCJAG00000020518	KNOWN_BY_PROJECTION	protein_coding	FCF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	99983538	99999896	D	FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:HGNC:20220]
ENSCJAG00000004295	NOVEL	protein_coding	ENSCJAG00000004295	chromosome:C_jacchus3.2.1:2:1:204313951:1	1650110	1899410	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051980}  [Source:UniProtKB/TrEMBL;Acc:F6YWK7]
ENSCJAG00000013784	NOVEL	protein_coding	ENSCJAG00000013784	chromosome:C_jacchus3.2.1:7:1:155834243:1	80528569	80529706	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025336}  [Source:UniProtKB/TrEMBL;Acc:F7B102]
ENSCJAG00000013787	KNOWN_BY_PROJECTION	protein_coding	TMEM69	chromosome:C_jacchus3.2.1:7:1:155834243:1	80570703	80574092	D	transmembrane protein 69 [Source:HGNC Symbol;Acc:HGNC:28035]
ENSCJAG00000020522	KNOWN	protein_coding	YLPM1	chromosome:C_jacchus3.2.1:10:1:132174527:1	100024113	100101108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038176}; YLP motif-containing protein 1 {ECO:0000313|EMBL:JAB04984.1}  [Source:UniProtKB/TrEMBL;Acc:F7I053]
ENSCJAG00000013788	KNOWN	protein_coding	IPP	chromosome:C_jacchus3.2.1:7:1:155834243:1	80574268	80643915	R	Actin-binding protein IPP isoform 1 {ECO:0000313|EMBL:JAB21487.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025381}  [Source:UniProtKB/TrEMBL;Acc:F6YZQ4]
ENSCJAG00000004318	NOVEL	protein_coding	ENSCJAG00000004318	chromosome:C_jacchus3.2.1:2:1:204313951:1	2013188	2372224	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007811}  [Source:UniProtKB/TrEMBL;Acc:F6UL24]
ENSCJAG00000000311	KNOWN_BY_PROJECTION	protein_coding	IZUMO1	chromosome:C_jacchus3.2.1:22:1:49145316:1	40668072	40673778	R	izumo sperm-egg fusion 1 [Source:HGNC Symbol;Acc:HGNC:28539]
ENSCJAG00000005178	KNOWN	protein_coding	WBSCR17	chromosome:C_jacchus3.2.1:2:1:204313951:1	2731188	3320204	R	Putative polypeptide N-acetylgalactosaminyltransferase-like protein 3 {ECO:0000313|EMBL:JAB17685.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044599}  [Source:UniProtKB/TrEMBL;Acc:F7FHV5]
ENSCJAG00000000299	KNOWN_BY_PROJECTION	protein_coding	FGF21	chromosome:C_jacchus3.2.1:22:1:49145316:1	40682575	40687676	D	fibroblast growth factor 21 [Source:HGNC Symbol;Acc:HGNC:3678]
ENSCJAG00000000293	KNOWN	protein_coding	BCAT2	chromosome:C_jacchus3.2.1:22:1:49145316:1	40720060	40739821	R	Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}  [Source:UniProtKB/TrEMBL;Acc:F7H895]
ENSCJAG00000020964	KNOWN	protein_coding	MAST2	chromosome:C_jacchus3.2.1:7:1:155834243:1	80772111	80872009	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039080}  [Source:UniProtKB/TrEMBL;Acc:F7EAM9]
ENSCJAG00000013414	KNOWN_BY_PROJECTION	protein_coding	PLEKHG1	chromosome:C_jacchus3.2.1:4:1:171630274:1	151537236	151661799	D	pleckstrin homology domain containing, family G (with RhoGef domain) member 1 [Source:HGNC Symbol;Acc:HGNC:20884]
ENSCJAG00000035207	NOVEL	pseudogene	ENSCJAG00000035207	chromosome:C_jacchus3.2.1:2:1:204313951:1	3105794	3106097	R	<no descrition>
ENSCJAG00000013404	KNOWN_BY_PROJECTION	protein_coding	MTHFD1L	chromosome:C_jacchus3.2.1:4:1:171630274:1	151681793	151926295	D	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like [Source:HGNC Symbol;Acc:HGNC:21055]
ENSCJAG00000005161	KNOWN_BY_PROJECTION	protein_coding	AUTS2	chromosome:C_jacchus3.2.1:2:1:204313951:1	3619159	3647446	R	autism susceptibility candidate 2 [Source:HGNC Symbol;Acc:HGNC:14262]
ENSCJAG00000000291	KNOWN	protein_coding	HSD17B14	chromosome:C_jacchus3.2.1:22:1:49145316:1	40743043	40745414	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000486}  [Source:UniProtKB/TrEMBL;Acc:F7EWM6]
ENSCJAG00000000276	KNOWN_BY_PROJECTION	protein_coding	PPP1R15A	chromosome:C_jacchus3.2.1:22:1:49145316:1	40778288	40780998	D	protein phosphatase 1, regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]
ENSCJAG00000021001	KNOWN	protein_coding	PIK3R3	chromosome:C_jacchus3.2.1:7:1:155834243:1	80875958	81025753	R	Phosphatidylinositol 3-kinase regulatory subunit gamma {ECO:0000313|EMBL:JAB08392.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039110}  [Source:UniProtKB/TrEMBL;Acc:F7HFW1]
ENSCJAG00000000271	KNOWN_BY_PROJECTION	protein_coding	TULP2	chromosome:C_jacchus3.2.1:22:1:49145316:1	40786537	40800756	R	tubby like protein 2 [Source:HGNC Symbol;Acc:HGNC:12424]
ENSCJAG00000031331	NOVEL	protein_coding	ENSCJAG00000031331	chromosome:C_jacchus3.2.1:2:1:204313951:1	5797556	5799493	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023267}  [Source:UniProtKB/TrEMBL;Acc:F7IKK7]
ENSCJAG00000006017	NOVEL	protein_coding	ENSCJAG00000006017	chromosome:C_jacchus3.2.1:2:1:204313951:1	6990042	7000041	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011056}  [Source:UniProtKB/TrEMBL;Acc:F7IID4]
ENSCJAG00000020548	KNOWN_BY_PROJECTION	protein_coding	PROX2	chromosome:C_jacchus3.2.1:10:1:132174527:1	100117513	100128682	R	prospero homeobox 2 [Source:HGNC Symbol;Acc:HGNC:26715]
ENSCJAG00000007674	NOVEL	protein_coding	ENSCJAG00000007674	chromosome:C_jacchus3.2.1:2:1:204313951:1	7001053	7008042	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014216}  [Source:UniProtKB/TrEMBL;Acc:F7HVF0]
ENSCJAG00000021014	NOVEL	pseudogene	ENSCJAG00000021014	chromosome:C_jacchus3.2.1:7:1:155834243:1	80886645	80887413	D	<no descrition>
ENSCJAG00000014937	NOVEL	protein_coding	ENSCJAG00000014937	chromosome:C_jacchus3.2.1:2:1:204313951:1	7055173	7071629	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046941}  [Source:UniProtKB/TrEMBL;Acc:F7I5S7]
ENSCJAG00000000266	KNOWN_BY_PROJECTION	protein_coding	NUCB1	chromosome:C_jacchus3.2.1:22:1:49145316:1	40805627	40829161	D	nucleobindin 1 [Source:HGNC Symbol;Acc:HGNC:8043]
ENSCJAG00000021020	KNOWN_BY_PROJECTION	protein_coding	TSPAN1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81024680	81035828	D	tetraspanin 1 [Source:HGNC Symbol;Acc:HGNC:20657]
ENSCJAG00000014924	KNOWN_BY_PROJECTION	protein_coding	WBSCR16	chromosome:C_jacchus3.2.1:2:1:204313951:1	7094226	7115943	R	Williams-Beuren syndrome chromosome region 16 [Source:HGNC Symbol;Acc:HGNC:14948]
ENSCJAG00000020551	KNOWN_BY_PROJECTION	protein_coding	DLST	chromosome:C_jacchus3.2.1:10:1:132174527:1	100149178	100169664	D	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) [Source:HGNC Symbol;Acc:HGNC:2911]
ENSCJAG00000020566	KNOWN_BY_PROJECTION	protein_coding	RPS6KL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	100174849	100188607	R	ribosomal protein S6 kinase-like 1 [Source:HGNC Symbol;Acc:HGNC:20222]
ENSCJAG00000020572	KNOWN	protein_coding	PGF	chromosome:C_jacchus3.2.1:10:1:132174527:1	100212909	100227166	R	Placenta growth factor isoform 1 {ECO:0000313|EMBL:JAB03765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038232}  [Source:UniProtKB/TrEMBL;Acc:F7ITA1]
ENSCJAG00000021026	KNOWN	protein_coding	POMGNT1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81038396	81047791	R	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform 1 {ECO:0000313|EMBL:JAB09777.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039225}  [Source:UniProtKB/TrEMBL;Acc:F7FU79]
ENSCJAG00000000256	KNOWN	protein_coding	DHDH	chromosome:C_jacchus3.2.1:22:1:49145316:1	40836740	40851876	D	Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase {ECO:0000313|EMBL:JAB02312.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000439}  [Source:UniProtKB/TrEMBL;Acc:F7FPG8]
ENSCJAG00000000253	KNOWN_BY_PROJECTION	protein_coding	BAX	chromosome:C_jacchus3.2.1:22:1:49145316:1	40858404	40866508	D	BCL2-associated X protein [Source:HGNC Symbol;Acc:HGNC:959]
ENSCJAG00000013402	KNOWN_BY_PROJECTION	protein_coding	AKAP12	chromosome:C_jacchus3.2.1:4:1:171630274:1	152130356	152179796	D	A kinase (PRKA) anchor protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
ENSCJAG00000013393	KNOWN	protein_coding	ZBTB2	chromosome:C_jacchus3.2.1:4:1:171630274:1	152196384	152226025	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024594}; Zinc finger and BTB domain-containing protein 2 {ECO:0000313|EMBL:JAB09088.1}  [Source:UniProtKB/TrEMBL;Acc:F7F9G3]
ENSCJAG00000000250	NOVEL	protein_coding	ENSCJAG00000000250	chromosome:C_jacchus3.2.1:22:1:49145316:1	40869951	40871570	D	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7G1I6]
ENSCJAG00000004902	NOVEL	protein_coding	ENSCJAG00000004902	chromosome:C_jacchus3.2.1:2:1:204313951:1	7125720	7127039	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008953}  [Source:UniProtKB/TrEMBL;Acc:F7I5N0]
ENSCJAG00000035226	NOVEL	pseudogene	ENSCJAG00000035226	chromosome:C_jacchus3.2.1:2:1:204313951:1	7135199	7135364	D	<no descrition>
ENSCJAG00000014916	NOVEL	protein_coding	ENSCJAG00000014916	chromosome:C_jacchus3.2.1:2:1:204313951:1	7146719	7170721	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027479}  [Source:UniProtKB/TrEMBL;Acc:F7FT36]
ENSCJAG00000013350	KNOWN	protein_coding	RMND1	chromosome:C_jacchus3.2.1:4:1:171630274:1	152239703	152285461	R	Required for meiotic nuclear division protein 1 homolog isoform 1 {ECO:0000313|EMBL:JAB10345.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024582}  [Source:UniProtKB/TrEMBL;Acc:F7FN68]
ENSCJAG00000020577	KNOWN_BY_PROJECTION	protein_coding	EIF2B2	chromosome:C_jacchus3.2.1:10:1:132174527:1	100276123	100283928	D	eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa [Source:HGNC Symbol;Acc:HGNC:3258]
ENSCJAG00000016182	KNOWN_BY_PROJECTION	protein_coding	GTF2I	chromosome:C_jacchus3.2.1:2:1:204313951:1	7177587	7266751	R	general transcription factor IIi [Source:HGNC Symbol;Acc:HGNC:4659]
ENSCJAG00000000232	KNOWN_BY_PROJECTION	protein_coding	GYS1	chromosome:C_jacchus3.2.1:22:1:49145316:1	40876217	40907477	R	glycogen synthase 1 (muscle) [Source:HGNC Symbol;Acc:HGNC:4706]
ENSCJAG00000021078	KNOWN	protein_coding	LURAP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81052086	81070158	D	Leucine rich adaptor protein 1 {ECO:0000313|EMBL:JAB23239.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039227}  [Source:UniProtKB/TrEMBL;Acc:F7FU64]
ENSCJAG00000013343	KNOWN	protein_coding	C6ORF211	chromosome:C_jacchus3.2.1:4:1:171630274:1	152285565	152301366	D	UPF0364 protein C6orf211 {ECO:0000313|EMBL:JAB34481.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024503}  [Source:UniProtKB/TrEMBL;Acc:F7H2W6]
ENSCJAG00000021080	KNOWN_BY_PROJECTION	protein_coding	RAD54L	chromosome:C_jacchus3.2.1:7:1:155834243:1	81094721	81124818	D	RAD54-like (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:9826]
ENSCJAG00000000222	KNOWN	protein_coding	RUVBL2	chromosome:C_jacchus3.2.1:22:1:49145316:1	40907688	40951031	D	RuvB-like 2 {ECO:0000313|EMBL:JAB02971.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044927}  [Source:UniProtKB/TrEMBL;Acc:F7GQG2]
ENSCJAG00000016131	KNOWN_BY_PROJECTION	protein_coding	GTF2IRD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	7353897	7435951	R	GTF2I repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:4661]
ENSCJAG00000003947	KNOWN_BY_PROJECTION	protein_coding	CLIP2	chromosome:C_jacchus3.2.1:2:1:204313951:1	7545261	7618273	R	CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
ENSCJAG00000020596	KNOWN_BY_PROJECTION	protein_coding	MLH3	chromosome:C_jacchus3.2.1:10:1:132174527:1	100288250	100325566	R	mutL homolog 3 [Source:HGNC Symbol;Acc:HGNC:7128]
ENSCJAG00000021111	KNOWN_BY_PROJECTION	protein_coding	LRRC41	chromosome:C_jacchus3.2.1:7:1:155834243:1	81124746	81151742	R	leucine rich repeat containing 41 [Source:HGNC Symbol;Acc:HGNC:16917]
ENSCJAG00000013339	KNOWN_BY_PROJECTION	protein_coding	CCDC170	chromosome:C_jacchus3.2.1:4:1:171630274:1	152365799	152446643	D	coiled-coil domain containing 170 [Source:HGNC Symbol;Acc:HGNC:21177]
ENSCJAG00000034602	KNOWN_BY_PROJECTION	protein_coding	ELN	chromosome:C_jacchus3.2.1:2:1:204313951:1	7603618	7773311	R	elastin [Source:HGNC Symbol;Acc:HGNC:3327]
ENSCJAG00000003985	NOVEL	protein_coding	ENSCJAG00000003985	chromosome:C_jacchus3.2.1:2:1:204313951:1	7696883	7723774	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007251}  [Source:UniProtKB/TrEMBL;Acc:F6U2S0]
ENSCJAG00000003998	KNOWN	protein_coding	LAT2	chromosome:C_jacchus3.2.1:2:1:204313951:1	7731275	7741479	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007278}  [Source:UniProtKB/TrEMBL;Acc:F6TFW6]
ENSCJAG00000013293	KNOWN_BY_PROJECTION	protein_coding	ESR1	chromosome:C_jacchus3.2.1:4:1:171630274:1	152533461	153022332	D	estrogen receptor 1 [Source:HGNC Symbol;Acc:HGNC:3467]
ENSCJAG00000004009	NOVEL	protein_coding	ENSCJAG00000004009	chromosome:C_jacchus3.2.1:2:1:204313951:1	7787694	7788508	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007281}  [Source:UniProtKB/TrEMBL;Acc:F6TF36]
ENSCJAG00000016758	KNOWN_BY_PROJECTION	protein_coding	WBSCR28	chromosome:C_jacchus3.2.1:2:1:204313951:1	7934931	7939216	R	Williams-Beuren syndrome chromosome region 28 [Source:HGNC Symbol;Acc:HGNC:23018]
ENSCJAG00000016763	KNOWN_BY_PROJECTION	protein_coding	WBSCR27	chromosome:C_jacchus3.2.1:2:1:204313951:1	7954396	7961077	D	Williams Beuren syndrome chromosome region 27 [Source:HGNC Symbol;Acc:HGNC:19068]
ENSCJAG00000021928	KNOWN	protein_coding	CLDN4	chromosome:C_jacchus3.2.1:2:1:204313951:1	7964008	7965623	R	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:F7IE58]
ENSCJAG00000016766	KNOWN	protein_coding	CLDN3	chromosome:C_jacchus3.2.1:2:1:204313951:1	8022875	8024172	D	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:F7BNR9]
ENSCJAG00000016768	KNOWN_BY_PROJECTION	protein_coding	ABHD11	chromosome:C_jacchus3.2.1:2:1:204313951:1	8059304	8061141	D	abhydrolase domain containing 11 [Source:HGNC Symbol;Acc:HGNC:16407]
ENSCJAG00000000189	KNOWN_BY_PROJECTION	protein_coding	LIN7B	chromosome:C_jacchus3.2.1:22:1:49145316:1	40922905	41015157	D	lin-7 homolog B (C. elegans) [Source:HGNC Symbol;Acc:HGNC:17788]
ENSCJAG00000016769	KNOWN	protein_coding	STX1A	chromosome:C_jacchus3.2.1:2:1:204313951:1	8076952	8096868	D	Syntaxin-1A isoform 1 {ECO:0000313|EMBL:JAB15570.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030899}  [Source:UniProtKB/TrEMBL;Acc:F6Z4V9]
ENSCJAG00000000216	NOVEL	protein_coding	ENSCJAG00000000216	chromosome:C_jacchus3.2.1:22:1:49145316:1	40951030	40952408	R	Choriogonadotropin subunit beta {ECO:0000313|Ensembl:ENSCJAP00000000359}  [Source:UniProtKB/TrEMBL;Acc:F7HJ09]
ENSCJAG00000023162	KNOWN	protein_coding	NTF4	chromosome:C_jacchus3.2.1:22:1:49145316:1	40959363	40961733	R	Neurotrophin-4 preproprotein {ECO:0000313|EMBL:JAB01645.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041684}  [Source:UniProtKB/TrEMBL;Acc:F7HA42]
ENSCJAG00000034389	NOVEL	protein_coding	ENSCJAG00000034389	chromosome:C_jacchus3.2.1:22:1:49145316:1	40964167	40964718	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048414}  [Source:UniProtKB/TrEMBL;Acc:F7E4U5]
ENSCJAG00000000212	KNOWN_BY_PROJECTION	protein_coding	KCNA7	chromosome:C_jacchus3.2.1:22:1:49145316:1	40967818	40970688	R	potassium channel, voltage gated shaker related subfamily A, member 7 [Source:HGNC Symbol;Acc:HGNC:6226]
ENSCJAG00000021126	NOVEL	protein_coding	ENSCJAG00000021126	chromosome:C_jacchus3.2.1:7:1:155834243:1	81152453	81161870	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039321}  [Source:UniProtKB/TrEMBL;Acc:F7CVS9]
ENSCJAG00000021132	KNOWN	protein_coding	NSUN4	chromosome:C_jacchus3.2.1:7:1:155834243:1	81178569	81207891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050252}  [Source:UniProtKB/TrEMBL;Acc:F7EZE6]
ENSCJAG00000000193	KNOWN_BY_PROJECTION	protein_coding	SNRNP70	chromosome:C_jacchus3.2.1:22:1:49145316:1	40983850	41003712	D	small nuclear ribonucleoprotein 70kDa (U1) [Source:HGNC Symbol;Acc:HGNC:11150]
ENSCJAG00000016799	KNOWN_BY_PROJECTION	protein_coding	WBSCR22	chromosome:C_jacchus3.2.1:2:1:204313951:1	8098798	8110933	R	Williams Beuren syndrome chromosome region 22 [Source:HGNC Symbol;Acc:HGNC:16405]
ENSCJAG00000036643	NOVEL	protein_coding	ENSCJAG00000036643	chromosome:C_jacchus3.2.1:7:1:155834243:1	81179812	81207891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039335}  [Source:UniProtKB/TrEMBL;Acc:F7HFL2]
ENSCJAG00000016807	KNOWN	protein_coding	VPS37D	chromosome:C_jacchus3.2.1:2:1:204313951:1	8120186	8124433	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030944}; Vacuolar protein sorting-associated protein 37D {ECO:0000313|EMBL:JAB04220.1}  [Source:UniProtKB/TrEMBL;Acc:F6WRF8]
ENSCJAG00000020604	KNOWN	protein_coding	ACYP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	100327582	100337206	R	Acylphosphatase {ECO:0000256|RuleBase:RU000553}  [Source:UniProtKB/TrEMBL;Acc:F7IL81]
ENSCJAG00000020607	KNOWN_BY_PROJECTION	protein_coding	ZC2HC1C	chromosome:C_jacchus3.2.1:10:1:132174527:1	100347713	100354727	D	zinc finger, C2HC-type containing 1C [Source:HGNC Symbol;Acc:HGNC:20354]
ENSCJAG00000016824	KNOWN_BY_PROJECTION	protein_coding	MLXIPL	chromosome:C_jacchus3.2.1:2:1:204313951:1	8171494	8203184	D	MLX interacting protein-like [Source:HGNC Symbol;Acc:HGNC:12744]
ENSCJAG00000021138	KNOWN	protein_coding	FAAH	chromosome:C_jacchus3.2.1:7:1:155834243:1	81226131	81244504	D	Fatty-acid amide hydrolase 1 {ECO:0000313|EMBL:JAB03617.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039351}  [Source:UniProtKB/TrEMBL;Acc:F7HAB8]
ENSCJAG00000020610	KNOWN	protein_coding	NEK9	chromosome:C_jacchus3.2.1:10:1:132174527:1	100359220	100406931	R	Serine/threonine-protein kinase Nek9 {ECO:0000313|EMBL:JAB10508.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038340}  [Source:UniProtKB/TrEMBL;Acc:F7I9C2]
ENSCJAG00000016836	KNOWN_BY_PROJECTION	protein_coding	TBL2	chromosome:C_jacchus3.2.1:2:1:204313951:1	8219722	8226332	D	transducin (beta)-like 2 [Source:HGNC Symbol;Acc:HGNC:11586]
ENSCJAG00000021141	KNOWN_BY_PROJECTION	protein_coding	DMBX1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81341653	81349198	D	diencephalon/mesencephalon homeobox 1 [Source:HGNC Symbol;Acc:HGNC:19026]
ENSCJAG00000016860	NOVEL	protein_coding	ENSCJAG00000016860	chromosome:C_jacchus3.2.1:2:1:204313951:1	8239553	8261257	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031033}  [Source:UniProtKB/TrEMBL;Acc:F7HYT8]
ENSCJAG00000021147	KNOWN_BY_PROJECTION	protein_coding	KNCN	chromosome:C_jacchus3.2.1:7:1:155834243:1	81386676	81390081	R	kinocilin [Source:HGNC Symbol;Acc:HGNC:26488]
ENSCJAG00000013337	NOVEL	protein_coding	ENSCJAG00000013337	chromosome:C_jacchus3.2.1:4:1:171630274:1	152908175	152910306	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024482}  [Source:UniProtKB/TrEMBL;Acc:F7D788]
ENSCJAG00000016867	KNOWN_BY_PROJECTION	protein_coding	BAZ1B	chromosome:C_jacchus3.2.1:2:1:204313951:1	8281048	8368880	D	bromodomain adjacent to zinc finger domain, 1B [Source:HGNC Symbol;Acc:HGNC:961]
ENSCJAG00000021149	KNOWN_BY_PROJECTION	protein_coding	MKNK1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81398415	81443684	R	MAP kinase interacting serine/threonine kinase 1 [Source:HGNC Symbol;Acc:HGNC:7110]
ENSCJAG00000021158	KNOWN_BY_PROJECTION	protein_coding	MOB3C	chromosome:C_jacchus3.2.1:7:1:155834243:1	81447098	81452873	R	MOB kinase activator 3C [Source:HGNC Symbol;Acc:HGNC:29800]
ENSCJAG00000021159	KNOWN_BY_PROJECTION	protein_coding	ATPAF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81475507	81520576	R	ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18803]
ENSCJAG00000016944	KNOWN_BY_PROJECTION	protein_coding	FKBP6	chromosome:C_jacchus3.2.1:2:1:204313951:1	8463221	8477838	R	FK506 binding protein 6, 36kDa [Source:HGNC Symbol;Acc:HGNC:3722]
ENSCJAG00000016956	NOVEL	protein_coding	ENSCJAG00000016956	chromosome:C_jacchus3.2.1:2:1:204313951:1	8481530	8501824	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031195}  [Source:UniProtKB/TrEMBL;Acc:F7IJW1]
ENSCJAG00000035809	NOVEL	protein_coding	ENSCJAG00000035809	chromosome:C_jacchus3.2.1:7:1:155834243:1	81475507	81477353	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052054}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ5]
ENSCJAG00000021163	KNOWN_BY_PROJECTION	protein_coding	TEX38	chromosome:C_jacchus3.2.1:7:1:155834243:1	81523869	81525604	D	testis expressed 38 [Source:HGNC Symbol;Acc:HGNC:29589]
ENSCJAG00000016968	KNOWN	protein_coding	NSUN5	chromosome:C_jacchus3.2.1:2:1:204313951:1	8501942	8507471	D	Putative methyltransferase NSUN5 isoform 1 {ECO:0000313|EMBL:JAB40115.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031225}  [Source:UniProtKB/TrEMBL;Acc:F7IF40]
ENSCJAG00000021164	KNOWN	protein_coding	EFCAB14	chromosome:C_jacchus3.2.1:7:1:155834243:1	81530217	81570190	R	EF-hand domain-containing protein KIAA0494 {ECO:0000313|EMBL:JAB07056.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039418}  [Source:UniProtKB/TrEMBL;Acc:F7GHC0]
ENSCJAG00000021173	KNOWN_BY_PROJECTION	protein_coding	CYP4B1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81690512	81698310	D	cytochrome P450, family 4, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2644]
ENSCJAG00000021178	NOVEL	protein_coding	ENSCJAG00000021178	chromosome:C_jacchus3.2.1:7:1:155834243:1	81699844	82085467	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039448}  [Source:UniProtKB/TrEMBL;Acc:F7FTG0]
ENSCJAG00000016983	KNOWN	protein_coding	POM121C	chromosome:C_jacchus3.2.1:2:1:204313951:1	8508304	8531985	R	Nuclear envelope pore membrane protein POM 121C {ECO:0000313|EMBL:JAB41356.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050094}  [Source:UniProtKB/TrEMBL;Acc:F7F075]
ENSCJAG00000012842	KNOWN_BY_PROJECTION	protein_coding	SYNE1	chromosome:C_jacchus3.2.1:4:1:171630274:1	153039024	153568198	R	spectrin repeat containing, nuclear envelope 1 [Source:HGNC Symbol;Acc:HGNC:17089]
ENSCJAG00000016998	KNOWN_BY_PROJECTION	protein_coding	HIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	8574406	8790376	R	huntingtin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:4913]
ENSCJAG00000035457	NOVEL	protein_coding	ENSCJAG00000035457	chromosome:C_jacchus3.2.1:7:1:155834243:1	81721418	81728991	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043248}  [Source:UniProtKB/TrEMBL;Acc:F7IAG5]
ENSCJAG00000021203	KNOWN_BY_PROJECTION	protein_coding	CYP4X1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81842004	81859161	D	cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
ENSCJAG00000021204	KNOWN_BY_PROJECTION	protein_coding	CYP4Z1	chromosome:C_jacchus3.2.1:7:1:155834243:1	81999165	82047312	D	cytochrome P450, family 4, subfamily Z, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20583]
ENSCJAG00000017018	KNOWN_BY_PROJECTION	protein_coding	CCL24	chromosome:C_jacchus3.2.1:2:1:204313951:1	8870560	8880261	R	chemokine (C-C motif) ligand 24 [Source:HGNC Symbol;Acc:HGNC:10623]
ENSCJAG00000017031	KNOWN_BY_PROJECTION	protein_coding	RHBDD2	chromosome:C_jacchus3.2.1:2:1:204313951:1	8912563	8925404	D	rhomboid domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23082]
ENSCJAG00000012804	KNOWN_BY_PROJECTION	protein_coding	POR	chromosome:C_jacchus3.2.1:2:1:204313951:1	8994592	9027195	D	P450 (cytochrome) oxidoreductase [Source:HGNC Symbol;Acc:HGNC:9208]
ENSCJAG00000035822	KNOWN	protein_coding	PDZK1IP1	chromosome:C_jacchus3.2.1:7:1:155834243:1	82078408	82085609	R	PDZK1-interacting protein 1 {ECO:0000313|EMBL:JAB02227.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039515}  [Source:UniProtKB/TrEMBL;Acc:F7DUI4]
ENSCJAG00000012796	KNOWN_BY_PROJECTION	protein_coding	TMEM120A	chromosome:C_jacchus3.2.1:2:1:204313951:1	9027511	9034467	R	transmembrane protein 120A [Source:HGNC Symbol;Acc:HGNC:21697]
ENSCJAG00000001347	KNOWN_BY_PROJECTION	protein_coding	STYXL1	chromosome:C_jacchus3.2.1:2:1:204313951:1	9036186	9073254	R	serine/threonine/tyrosine interacting-like 1 [Source:HGNC Symbol;Acc:HGNC:18165]
ENSCJAG00000021222	KNOWN_BY_PROJECTION	protein_coding	TAL1	chromosome:C_jacchus3.2.1:7:1:155834243:1	82120145	82130329	R	T-cell acute lymphocytic leukemia 1 [Source:HGNC Symbol;Acc:HGNC:11556]
ENSCJAG00000021228	KNOWN_BY_PROJECTION	protein_coding	STIL	chromosome:C_jacchus3.2.1:7:1:155834243:1	82153398	82216197	R	SCL/TAL1 interrupting locus [Source:HGNC Symbol;Acc:HGNC:10879]
ENSCJAG00000016316	KNOWN	protein_coding	MDH2	chromosome:C_jacchus3.2.1:2:1:204313951:1	9091096	9106782	D	Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}  [Source:UniProtKB/TrEMBL;Acc:F6RTH7]
ENSCJAG00000000188	NOVEL	pseudogene	ENSCJAG00000000188	chromosome:C_jacchus3.2.1:22:1:49145316:1	41015095	41015829	R	<no descrition>
ENSCJAG00000021250	KNOWN_BY_PROJECTION	protein_coding	CMPK1	chromosome:C_jacchus3.2.1:7:1:155834243:1	82237545	82273632	D	cytidine monophosphate (UMP-CMP) kinase 1, cytosolic [Source:HGNC Symbol;Acc:HGNC:18170]
ENSCJAG00000031764	KNOWN_BY_PROJECTION	protein_coding	SRRM3	chromosome:C_jacchus3.2.1:2:1:204313951:1	9161266	9329496	D	serine/arginine repetitive matrix 3 [Source:HGNC Symbol;Acc:HGNC:26729]
ENSCJAG00000016307	KNOWN	protein_coding	SRRM3	chromosome:C_jacchus3.2.1:2:1:204313951:1	9208695	9212508	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030000}  [Source:UniProtKB/TrEMBL;Acc:F6SF09]
ENSCJAG00000016303	KNOWN	protein_coding	ENSCJAG00000016303	chromosome:C_jacchus3.2.1:2:1:204313951:1	9236337	9238024	D	Heat shock protein beta-1 {ECO:0000313|EMBL:JAB28130.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029996}  [Source:UniProtKB/TrEMBL;Acc:F7I2I3]
ENSCJAG00000000151	KNOWN	protein_coding	PPFIA3	chromosome:C_jacchus3.2.1:22:1:49145316:1	41016094	41048200	D	Liprin-alpha-3 {ECO:0000313|EMBL:JAB10529.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000301}  [Source:UniProtKB/TrEMBL;Acc:F7D921]
ENSCJAG00000021263	KNOWN_BY_PROJECTION	protein_coding	FOXE3	chromosome:C_jacchus3.2.1:7:1:155834243:1	82314543	82335213	D	forkhead box E3 [Source:HGNC Symbol;Acc:HGNC:3808]
ENSCJAG00000032943	KNOWN	protein_coding	YWHAG	chromosome:C_jacchus3.2.1:2:1:204313951:1	9260987	9296201	R	14-3-3 protein gamma {ECO:0000313|EMBL:JAB03089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047594}  [Source:UniProtKB/TrEMBL;Acc:F7DNK1]
ENSCJAG00000021271	KNOWN	protein_coding	SLC5A9	chromosome:C_jacchus3.2.1:7:1:155834243:1	83117398	83142274	D	Sodium/glucose cotransporter 4 isoform 2 {ECO:0000313|EMBL:JAB03499.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039607}  [Source:UniProtKB/TrEMBL;Acc:F7GZA9]
ENSCJAG00000016269	KNOWN_BY_PROJECTION	protein_coding	SSC4D	chromosome:C_jacchus3.2.1:2:1:204313951:1	9326743	9347765	R	scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
ENSCJAG00000000136	KNOWN_BY_PROJECTION	protein_coding	HRC	chromosome:C_jacchus3.2.1:22:1:49145316:1	41048406	41052403	R	histidine rich calcium binding protein [Source:HGNC Symbol;Acc:HGNC:5178]
ENSCJAG00000016252	NOVEL	protein_coding	ENSCJAG00000016252	chromosome:C_jacchus3.2.1:2:1:204313951:1	9335216	9373410	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014343}  [Source:UniProtKB/TrEMBL;Acc:F7IGG4]
ENSCJAG00000000118	KNOWN_BY_PROJECTION	protein_coding	TRPM4	chromosome:C_jacchus3.2.1:22:1:49145316:1	41063819	41101137	D	transient receptor potential cation channel, subfamily M, member 4 [Source:HGNC Symbol;Acc:HGNC:17993]
ENSCJAG00000021281	NOVEL	pseudogene	ENSCJAG00000021281	chromosome:C_jacchus3.2.1:7:1:155834243:1	83155620	83156532	R	<no descrition>
ENSCJAG00000021283	KNOWN_BY_PROJECTION	protein_coding	AGBL4	chromosome:C_jacchus3.2.1:7:1:155834243:1	83354859	83528322	R	ATP/GTP binding protein-like 4 [Source:HGNC Symbol;Acc:HGNC:25892]
ENSCJAG00000000117	NOVEL	pseudogene	ENSCJAG00000000117	chromosome:C_jacchus3.2.1:22:1:49145316:1	41125288	41125745	R	<no descrition>
ENSCJAG00000000115	KNOWN_BY_PROJECTION	protein_coding	SLC6A16	chromosome:C_jacchus3.2.1:22:1:49145316:1	41176694	41179474	R	solute carrier family 6, member 16 [Source:HGNC Symbol;Acc:HGNC:13622]
ENSCJAG00000021284	KNOWN_BY_PROJECTION	protein_coding	BEND5	chromosome:C_jacchus3.2.1:7:1:155834243:1	83601968	83651653	R	BEN domain containing 5 [Source:HGNC Symbol;Acc:HGNC:25668]
ENSCJAG00000000113	NOVEL	protein_coding	ENSCJAG00000000113	chromosome:C_jacchus3.2.1:22:1:49145316:1	41199403	41202547	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000185}  [Source:UniProtKB/TrEMBL;Acc:F7DR64]
ENSCJAG00000006765	NOVEL	pseudogene	ENSCJAG00000006765	chromosome:C_jacchus3.2.1:2:1:204313951:1	9368698	9368941	R	<no descrition>
ENSCJAG00000000104	KNOWN_BY_PROJECTION	protein_coding	TEAD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	41206083	41229077	R	TEA domain family member 2 [Source:HGNC Symbol;Acc:HGNC:11715]
ENSCJAG00000000102	KNOWN_BY_PROJECTION	protein_coding	DKKL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41233771	41240742	D	dickkopf-like 1 [Source:HGNC Symbol;Acc:HGNC:16528]
ENSCJAG00000000094	KNOWN_BY_PROJECTION	protein_coding	CCDC155	chromosome:C_jacchus3.2.1:22:1:49145316:1	41263123	41292335	D	coiled-coil domain containing 155 [Source:HGNC Symbol;Acc:HGNC:26520]
ENSCJAG00000000093	KNOWN_BY_PROJECTION	protein_coding	PTH2	chromosome:C_jacchus3.2.1:22:1:49145316:1	41296885	41297904	R	parathyroid hormone 2 [Source:HGNC Symbol;Acc:HGNC:30828]
ENSCJAG00000016235	KNOWN	protein_coding	DTX2	chromosome:C_jacchus3.2.1:2:1:204313951:1	9400218	9461184	D	Putative E3 ubiquitin-protein ligase DTX2 isoform a {ECO:0000313|EMBL:JAB22032.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048050}  [Source:UniProtKB/TrEMBL;Acc:F7FQK0]
ENSCJAG00000000089	KNOWN_BY_PROJECTION	protein_coding	SLC17A7	chromosome:C_jacchus3.2.1:22:1:49145316:1	41305299	41317918	R	solute carrier family 17 (vesicular glutamate transporter), member 7 [Source:HGNC Symbol;Acc:HGNC:16704]
ENSCJAG00000000084	KNOWN	protein_coding	PIH1D1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41322081	41327389	R	PIH1 domain-containing protein 1 {ECO:0000313|EMBL:JAB23647.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000153}  [Source:UniProtKB/TrEMBL;Acc:F7EIZ3]
ENSCJAG00000023125	NOVEL	pseudogene	ENSCJAG00000023125	chromosome:C_jacchus3.2.1:7:1:155834243:1	84243015	84244109	D	<no descrition>
ENSCJAG00000034133	NOVEL	pseudogene	ENSCJAG00000034133	chromosome:C_jacchus3.2.1:7:1:155834243:1	84334275	84334764	R	<no descrition>
ENSCJAG00000000074	KNOWN_BY_PROJECTION	protein_coding	ALDH16A1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41329321	41375741	D	aldehyde dehydrogenase 16 family, member A1 [Source:HGNC Symbol;Acc:HGNC:28114]
ENSCJAG00000013725	KNOWN	protein_coding	ELAVL4	chromosome:C_jacchus3.2.1:7:1:155834243:1	84931659	85084836	D	ELAV-like protein 4 isoform 2 {ECO:0000313|EMBL:JAB13786.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025359}  [Source:UniProtKB/TrEMBL;Acc:F7AGG7]
ENSCJAG00000000083	NOVEL	protein_coding	ENSCJAG00000000083	chromosome:C_jacchus3.2.1:22:1:49145316:1	41355683	41356532	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000146}  [Source:UniProtKB/TrEMBL;Acc:F7EJ87]
ENSCJAG00000000081	KNOWN_BY_PROJECTION	protein_coding	FLT3LG	chromosome:C_jacchus3.2.1:22:1:49145316:1	41363613	41371928	D	fms-related tyrosine kinase 3 ligand [Source:HGNC Symbol;Acc:HGNC:3766]
ENSCJAG00000000072	KNOWN_BY_PROJECTION	protein_coding	RPL13A	chromosome:C_jacchus3.2.1:22:1:49145316:1	41373387	41377706	D	ribosomal protein L13a [Source:HGNC Symbol;Acc:HGNC:10304]
ENSCJAG00000013804	NOVEL	pseudogene	ENSCJAG00000013804	chromosome:C_jacchus3.2.1:7:1:155834243:1	85204926	85205980	D	<no descrition>
ENSCJAG00000021554	KNOWN_BY_PROJECTION	protein_coding	DMRTA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	85326432	85332291	R	DMRT-like family A2 [Source:HGNC Symbol;Acc:HGNC:13908]
ENSCJAG00000020627	KNOWN	protein_coding	TMED10	chromosome:C_jacchus3.2.1:10:1:132174527:1	100413240	100457749	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038356}  [Source:UniProtKB/TrEMBL;Acc:F7I710]
ENSCJAG00000000069	NOVEL	protein_coding	ENSCJAG00000000069	chromosome:C_jacchus3.2.1:22:1:49145316:1	41380762	41385405	D	<no descrition>
ENSCJAG00000020633	KNOWN	protein_coding	FOS	chromosome:C_jacchus3.2.1:10:1:132174527:1	100563784	100567097	D	Proto-oncogene c-Fos {ECO:0000313|EMBL:JAB25166.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038367}  [Source:UniProtKB/TrEMBL;Acc:F7I4Q5]
ENSCJAG00000000066	KNOWN_BY_PROJECTION	protein_coding	FCGRT	chromosome:C_jacchus3.2.1:22:1:49145316:1	41397495	41413254	D	Fc fragment of IgG, receptor, transporter, alpha [Source:HGNC Symbol;Acc:HGNC:3621]
ENSCJAG00000021555	KNOWN	protein_coding	FAF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	85349882	85929591	R	FAS-associated factor 1 {ECO:0000313|EMBL:JAB02100.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040136}  [Source:UniProtKB/TrEMBL;Acc:F7I2S1]
ENSCJAG00000020645	KNOWN	protein_coding	JDP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	100721477	100761712	D	Jun dimerization protein 2 isoform b {ECO:0000313|EMBL:JAB37669.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038387}  [Source:UniProtKB/TrEMBL;Acc:F7I4L5]
ENSCJAG00000000060	KNOWN_BY_PROJECTION	protein_coding	RCN3	chromosome:C_jacchus3.2.1:22:1:49145316:1	41414437	41429679	D	reticulocalbin 3, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:HGNC:21145]
ENSCJAG00000031301	NOVEL	protein_coding	ENSCJAG00000031301	chromosome:C_jacchus3.2.1:10:1:132174527:1	100793407	100793890	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049657}  [Source:UniProtKB/TrEMBL;Acc:F6ZDQ3]
ENSCJAG00000020651	KNOWN	protein_coding	BATF	chromosome:C_jacchus3.2.1:10:1:132174527:1	100822600	100847133	D	Basic leucine zipper transcriptional factor ATF-like {ECO:0000313|EMBL:JAB02183.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038391}  [Source:UniProtKB/TrEMBL;Acc:F7I4L1]
ENSCJAG00000020653	KNOWN	protein_coding	FLVCR2	chromosome:C_jacchus3.2.1:10:1:132174527:1	100880666	100946129	D	Feline leukemia virus subgroup C receptor-related protein 2 isoform 2 {ECO:0000313|EMBL:JAB22960.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038401}  [Source:UniProtKB/TrEMBL;Acc:F7HXJ4]
ENSCJAG00000016147	NOVEL	protein_coding	ENSCJAG00000016147	chromosome:C_jacchus3.2.1:2:1:204313951:1	9488750	9494980	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029738}  [Source:UniProtKB/TrEMBL;Acc:F7I7J6]
ENSCJAG00000022592	NOVEL	protein_coding	ENSCJAG00000022592	chromosome:C_jacchus3.2.1:22:1:49145316:1	41433327	41435295	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041193}  [Source:UniProtKB/TrEMBL;Acc:F7DGY5]
ENSCJAG00000017616	KNOWN	protein_coding	NOSIP	chromosome:C_jacchus3.2.1:22:1:49145316:1	41441393	41446317	R	Nitric oxide synthase-interacting protein {ECO:0000313|EMBL:JAB06188.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032490}  [Source:UniProtKB/TrEMBL;Acc:F7HBU1]
ENSCJAG00000016216	NOVEL	protein_coding	ENSCJAG00000016216	chromosome:C_jacchus3.2.1:2:1:204313951:1	9525733	9563170	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029881}  [Source:UniProtKB/TrEMBL;Acc:F7INW6]
ENSCJAG00000020659	KNOWN_BY_PROJECTION	protein_coding	C14orf1	chromosome:C_jacchus3.2.1:10:1:132174527:1	100949648	100959449	R	chromosome 14 open reading frame 1 [Source:HGNC Symbol;Acc:HGNC:1187]
ENSCJAG00000017641	KNOWN	protein_coding	PRRG2	chromosome:C_jacchus3.2.1:22:1:49145316:1	41465279	41474123	D	Transmembrane gamma-carboxyglutamic acid protein 2 {ECO:0000313|EMBL:JAB02193.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032511}  [Source:UniProtKB/TrEMBL;Acc:F7GWB4]
ENSCJAG00000016214	NOVEL	pseudogene	ENSCJAG00000016214	chromosome:C_jacchus3.2.1:2:1:204313951:1	9567316	9567584	D	<no descrition>
ENSCJAG00000016203	NOVEL	protein_coding	ENSCJAG00000016203	chromosome:C_jacchus3.2.1:2:1:204313951:1	9573516	9579182	D	<no descrition>
ENSCJAG00000020665	KNOWN_BY_PROJECTION	protein_coding	TTLL5	chromosome:C_jacchus3.2.1:10:1:132174527:1	100961137	101246385	D	tubulin tyrosine ligase-like family member 5 [Source:HGNC Symbol;Acc:HGNC:19963]
ENSCJAG00000016191	KNOWN	protein_coding	LRWD1	chromosome:C_jacchus3.2.1:2:1:204313951:1	9579603	9587057	R	Leucine-rich repeat and WD repeat-containing protein 1 {ECO:0000313|EMBL:JAB01775.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029831}  [Source:UniProtKB/TrEMBL;Acc:F7HKM2]
ENSCJAG00000017654	KNOWN_BY_PROJECTION	protein_coding	PRR12	chromosome:C_jacchus3.2.1:22:1:49145316:1	41474765	41511443	D	proline rich 12 [Source:HGNC Symbol;Acc:HGNC:29217]
ENSCJAG00000020678	NOVEL	pseudogene	ENSCJAG00000020678	chromosome:C_jacchus3.2.1:10:1:132174527:1	101240772	101241160	D	<no descrition>
ENSCJAG00000003614	KNOWN	protein_coding	RRAS	chromosome:C_jacchus3.2.1:22:1:49145316:1	41523053	41530104	R	Ras-related protein R-Ras {ECO:0000313|EMBL:JAB02989.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006562}  [Source:UniProtKB/TrEMBL;Acc:F7ECA3]
ENSCJAG00000033576	NOVEL	protein_coding	ENSCJAG00000033576	chromosome:C_jacchus3.2.1:7:1:155834243:1	85375077	85375940	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046975}  [Source:UniProtKB/TrEMBL;Acc:F7I164]
ENSCJAG00000035269	NOVEL	pseudogene	ENSCJAG00000035269	chromosome:C_jacchus3.2.1:7:1:155834243:1	85808548	85808918	D	<no descrition>
ENSCJAG00000021562	KNOWN	protein_coding	CDKN2C	chromosome:C_jacchus3.2.1:7:1:155834243:1	85936777	85943449	D	Cyclin-dependent kinase 4 inhibitor C {ECO:0000313|EMBL:JAB05854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040138}  [Source:UniProtKB/TrEMBL;Acc:F7I2R9]
ENSCJAG00000021565	KNOWN_BY_PROJECTION	protein_coding	C1orf185	chromosome:C_jacchus3.2.1:7:1:155834243:1	86103311	86118387	D	chromosome 1 open reading frame 185 [Source:HGNC Symbol;Acc:HGNC:28096]
ENSCJAG00000020680	KNOWN	protein_coding	TGFB3	chromosome:C_jacchus3.2.1:10:1:132174527:1	101249105	101273446	R	Transforming growth factor beta-3 preproprotein {ECO:0000313|EMBL:JAB11761.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038465}  [Source:UniProtKB/TrEMBL;Acc:F7IQT4]
ENSCJAG00000021567	NOVEL	pseudogene	ENSCJAG00000021567	chromosome:C_jacchus3.2.1:7:1:155834243:1	86134167	86134640	R	<no descrition>
ENSCJAG00000021568	KNOWN	protein_coding	RNF11	chromosome:C_jacchus3.2.1:7:1:155834243:1	86206697	86239654	D	RING finger protein 11 {ECO:0000313|EMBL:JAB04804.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040143}  [Source:UniProtKB/TrEMBL;Acc:F7I2Q7]
ENSCJAG00000020692	KNOWN	protein_coding	IFT43	chromosome:C_jacchus3.2.1:10:1:132174527:1	101277451	101383652	D	Intraflagellar transport protein 43 homolog isoform 2 {ECO:0000313|EMBL:JAB09812.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038470}  [Source:UniProtKB/TrEMBL;Acc:F7IQR4]
ENSCJAG00000003625	KNOWN_BY_PROJECTION	protein_coding	SCAF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41530388	41547573	D	SR-related CTD-associated factor 1 [Source:HGNC Symbol;Acc:HGNC:30403]
ENSCJAG00000021569	KNOWN_BY_PROJECTION	protein_coding	TTC39A	chromosome:C_jacchus3.2.1:7:1:155834243:1	86257034	86280532	R	tetratricopeptide repeat domain 39A [Source:HGNC Symbol;Acc:HGNC:18657]
ENSCJAG00000020694	NOVEL	protein_coding	ENSCJAG00000020694	chromosome:C_jacchus3.2.1:10:1:132174527:1	101320069	101320584	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7IQQ9]
ENSCJAG00000016185	KNOWN_BY_PROJECTION	protein_coding	ALKBH4	chromosome:C_jacchus3.2.1:2:1:204313951:1	9587163	9594672	D	alkB, alkylation repair homolog 4 (E. coli) [Source:HGNC Symbol;Acc:HGNC:21900]
ENSCJAG00000016180	KNOWN	protein_coding	ORAI2	chromosome:C_jacchus3.2.1:2:1:204313951:1	9602418	9636247	R	Protein orai-2 isoform a {ECO:0000313|EMBL:JAB23861.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029783}  [Source:UniProtKB/TrEMBL;Acc:F7I542]
ENSCJAG00000020696	KNOWN	protein_coding	GPATCH2L	chromosome:C_jacchus3.2.1:10:1:132174527:1	101459618	101510648	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038495}; Uncharacterized protein C14orf118 isoform 2 {ECO:0000313|EMBL:JAB02261.1}  [Source:UniProtKB/TrEMBL;Acc:F7ING6]
ENSCJAG00000016171	KNOWN	protein_coding	PRKRIP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	9644743	9675098	R	PRKR-interacting protein 1 {ECO:0000313|EMBL:JAB16453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029778}  [Source:UniProtKB/TrEMBL;Acc:F7I545]
ENSCJAG00000016164	KNOWN_BY_PROJECTION	protein_coding	SH2B2	chromosome:C_jacchus3.2.1:2:1:204313951:1	9714327	9735367	R	SH2B adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:17381]
ENSCJAG00000003637	KNOWN	protein_coding	IRF3	chromosome:C_jacchus3.2.1:22:1:49145316:1	41548478	41554293	R	Interferon regulatory factor 3 isoform 1 {ECO:0000313|EMBL:JAB06152.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006627}  [Source:UniProtKB/TrEMBL;Acc:F7HB60]
ENSCJAG00000020709	KNOWN_BY_PROJECTION	protein_coding	ESRRB	chromosome:C_jacchus3.2.1:10:1:132174527:1	101730376	101830970	D	estrogen-related receptor beta [Source:HGNC Symbol;Acc:HGNC:3473]
ENSCJAG00000021570	KNOWN_BY_PROJECTION	protein_coding	EPS15	chromosome:C_jacchus3.2.1:7:1:155834243:1	86332989	86616496	R	epidermal growth factor receptor pathway substrate 15 [Source:HGNC Symbol;Acc:HGNC:3419]
ENSCJAG00000020720	KNOWN	protein_coding	VASH1	chromosome:C_jacchus3.2.1:10:1:132174527:1	102087961	102103978	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038543}; Vasohibin-1 {ECO:0000313|EMBL:JAB18448.1}  [Source:UniProtKB/TrEMBL;Acc:F7IBK2]
ENSCJAG00000003663	KNOWN_BY_PROJECTION	protein_coding	BCL2L12	chromosome:C_jacchus3.2.1:22:1:49145316:1	41553743	41564079	D	BCL2-like 12 (proline rich) [Source:HGNC Symbol;Acc:HGNC:13787]
ENSCJAG00000020726	KNOWN_BY_PROJECTION	protein_coding	ANGEL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	102111266	102137119	R	angel homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19961]
ENSCJAG00000016076	KNOWN_BY_PROJECTION	protein_coding	CUX1	chromosome:C_jacchus3.2.1:2:1:204313951:1	9763804	10241978	R	cut-like homeobox 1 [Source:HGNC Symbol;Acc:HGNC:2557]
ENSCJAG00000003670	KNOWN_BY_PROJECTION	protein_coding	PRMT1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41570320	41585365	D	protein arginine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5187]
ENSCJAG00000016074	NOVEL	pseudogene	ENSCJAG00000016074	chromosome:C_jacchus3.2.1:2:1:204313951:1	10417220	10417629	D	<no descrition>
ENSCJAG00000016072	NOVEL	protein_coding	ENSCJAG00000016072	chromosome:C_jacchus3.2.1:2:1:204313951:1	10420006	10423531	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029583}  [Source:UniProtKB/TrEMBL;Acc:F7I5A2]
ENSCJAG00000016065	KNOWN_BY_PROJECTION	protein_coding	MYL10	chromosome:C_jacchus3.2.1:2:1:204313951:1	10434132	10446968	D	myosin, light chain 10, regulatory [Source:HGNC Symbol;Acc:HGNC:29825]
ENSCJAG00000021572	NOVEL	pseudogene	ENSCJAG00000021572	chromosome:C_jacchus3.2.1:7:1:155834243:1	86393073	86394121	R	<no descrition>
ENSCJAG00000003383	NOVEL	protein_coding	ENSCJAG00000003383	chromosome:C_jacchus3.2.1:2:1:204313951:1	10454412	10462281	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006135}  [Source:UniProtKB/TrEMBL;Acc:F7ESJ3]
ENSCJAG00000020736	KNOWN_BY_PROJECTION	protein_coding	LRRC74A	chromosome:C_jacchus3.2.1:10:1:132174527:1	102152818	102194280	D	leucine rich repeat containing 74A [Source:HGNC Symbol;Acc:HGNC:23346]
ENSCJAG00000032276	NOVEL	protein_coding	ENSCJAG00000032276	chromosome:C_jacchus3.2.1:10:1:132174527:1	102209103	102209901	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050291}  [Source:UniProtKB/TrEMBL;Acc:F7EYU3]
ENSCJAG00000016689	KNOWN_BY_PROJECTION	protein_coding	IRF2BPL	chromosome:C_jacchus3.2.1:10:1:132174527:1	102351754	102353718	R	interferon regulatory factor 2 binding protein-like [Source:HGNC Symbol;Acc:HGNC:14282]
ENSCJAG00000003757	KNOWN_BY_PROJECTION	protein_coding	CPT1C	chromosome:C_jacchus3.2.1:22:1:49145316:1	41590220	41611007	D	carnitine palmitoyltransferase 1C [Source:HGNC Symbol;Acc:HGNC:18540]
ENSCJAG00000016712	KNOWN	protein_coding	TMEM63C	chromosome:C_jacchus3.2.1:10:1:132174527:1	102408945	102611876	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030774}  [Source:UniProtKB/TrEMBL;Acc:F6VNE9]
ENSCJAG00000016697	KNOWN	protein_coding	CIPC	chromosome:C_jacchus3.2.1:10:1:132174527:1	102446234	102462478	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030723}; Uncharacterized protein KIAA1737 {ECO:0000313|EMBL:JAB04945.1}  [Source:UniProtKB/TrEMBL;Acc:F6Y389]
ENSCJAG00000016701	KNOWN	protein_coding	ZDHHC22	chromosome:C_jacchus3.2.1:10:1:132174527:1	102480587	102490718	R	Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}  [Source:UniProtKB/TrEMBL;Acc:F6Y2X5]
ENSCJAG00000003798	NOVEL	pseudogene	ENSCJAG00000003798	chromosome:C_jacchus3.2.1:22:1:49145316:1	41619439	41620013	R	<no descrition>
ENSCJAG00000016706	KNOWN_BY_PROJECTION	protein_coding	FAM204A	chromosome:C_jacchus3.2.1:10:1:132174527:1	102517518	102518101	R	family with sequence similarity 204, member A [Source:HGNC Symbol;Acc:HGNC:25794]
ENSCJAG00000003802	KNOWN_BY_PROJECTION	protein_coding	TSKS	chromosome:C_jacchus3.2.1:22:1:49145316:1	41650586	41667488	R	testis-specific serine kinase substrate [Source:HGNC Symbol;Acc:HGNC:30719]
ENSCJAG00000016731	KNOWN_BY_PROJECTION	protein_coding	NGB	chromosome:C_jacchus3.2.1:10:1:132174527:1	102614345	102621183	R	neuroglobin [Source:HGNC Symbol;Acc:HGNC:14077]
ENSCJAG00000033323	NOVEL	protein_coding	ENSCJAG00000033323	chromosome:C_jacchus3.2.1:22:1:49145316:1	41651657	41652741	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048555}  [Source:UniProtKB/TrEMBL;Acc:F7F919]
ENSCJAG00000021574	KNOWN	protein_coding	OSBPL9	chromosome:C_jacchus3.2.1:7:1:155834243:1	86634807	86830624	D	Oxysterol-binding protein {ECO:0000256|RuleBase:RU003845}  [Source:UniProtKB/TrEMBL;Acc:F7I1H4]
ENSCJAG00000003806	KNOWN	protein_coding	POLD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41670447	42231021	D	DNA polymerase {ECO:0000256|RuleBase:RU000442}  [Source:UniProtKB/TrEMBL;Acc:F7ID43]
ENSCJAG00000016739	KNOWN_BY_PROJECTION	protein_coding	POMT2	chromosome:C_jacchus3.2.1:10:1:132174527:1	102625269	102672694	R	protein-O-mannosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:19743]
ENSCJAG00000016061	KNOWN_BY_PROJECTION	protein_coding	COL26A1	chromosome:C_jacchus3.2.1:2:1:204313951:1	10504710	10527745	R	collagen, type XXVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18038]
ENSCJAG00000016058	KNOWN	protein_coding	RABL5	chromosome:C_jacchus3.2.1:2:1:204313951:1	10729250	10928044	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029111}  [Source:UniProtKB/TrEMBL;Acc:F7IHB4]
ENSCJAG00000016778	KNOWN_BY_PROJECTION	protein_coding	GSTZ1	chromosome:C_jacchus3.2.1:10:1:132174527:1	102672847	102683815	D	glutathione S-transferase zeta 1 [Source:HGNC Symbol;Acc:HGNC:4643]
ENSCJAG00000012833	KNOWN_BY_PROJECTION	protein_coding	MYCT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	153625712	153646995	D	myc target 1 [Source:HGNC Symbol;Acc:HGNC:23172]
ENSCJAG00000016053	KNOWN	protein_coding	FIS1	chromosome:C_jacchus3.2.1:2:1:204313951:1	10792314	10798747	D	Mitochondrial fission 1 protein {ECO:0000313|EMBL:JAB06427.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029536}  [Source:UniProtKB/TrEMBL;Acc:F7ICC4]
ENSCJAG00000016788	KNOWN	protein_coding	TMED8	chromosome:C_jacchus3.2.1:10:1:132174527:1	102696282	102733048	R	Protein TMED8 {ECO:0000313|EMBL:JAB24639.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030887}  [Source:UniProtKB/TrEMBL;Acc:F6ZM18]
ENSCJAG00000016040	KNOWN_BY_PROJECTION	protein_coding	CLDN15	chromosome:C_jacchus3.2.1:2:1:204313951:1	10800456	10806598	D	claudin 15 [Source:HGNC Symbol;Acc:HGNC:2036]
ENSCJAG00000012816	KNOWN	protein_coding	VIP	chromosome:C_jacchus3.2.1:4:1:171630274:1	153674520	153683005	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023500}; VIP peptides isoform 1 preproprotein {ECO:0000313|EMBL:JAB12797.1}  [Source:UniProtKB/TrEMBL;Acc:F7ID94]
ENSCJAG00000016034	KNOWN_BY_PROJECTION	protein_coding	ZNHIT1	chromosome:C_jacchus3.2.1:2:1:204313951:1	10812397	10819555	R	zinc finger, HIT-type containing 1 [Source:HGNC Symbol;Acc:HGNC:21688]
ENSCJAG00000016793	KNOWN_BY_PROJECTION	protein_coding	SAMD15	chromosome:C_jacchus3.2.1:10:1:132174527:1	102733072	102768766	D	sterile alpha motif domain containing 15 [Source:HGNC Symbol;Acc:HGNC:18631]
ENSCJAG00000035263	NOVEL	pseudogene	ENSCJAG00000035263	chromosome:C_jacchus3.2.1:4:1:171630274:1	153892726	153893095	R	<no descrition>
ENSCJAG00000012799	KNOWN_BY_PROJECTION	protein_coding	FBXO5	chromosome:C_jacchus3.2.1:4:1:171630274:1	153908940	153920576	R	F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
ENSCJAG00000016006	KNOWN_BY_PROJECTION	protein_coding	PLOD3	chromosome:C_jacchus3.2.1:2:1:204313951:1	10819955	10832843	D	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Source:HGNC Symbol;Acc:HGNC:9083]
ENSCJAG00000015998	NOVEL	protein_coding	ENSCJAG00000015998	chromosome:C_jacchus3.2.1:2:1:204313951:1	10834412	10835716	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052381}  [Source:UniProtKB/TrEMBL;Acc:F7ILD4]
ENSCJAG00000003892	KNOWN_BY_PROJECTION	protein_coding	FUZ	chromosome:C_jacchus3.2.1:22:1:49145316:1	41717637	41724802	R	fuzzy planar cell polarity protein [Source:HGNC Symbol;Acc:HGNC:26219]
ENSCJAG00000015984	KNOWN_BY_PROJECTION	protein_coding	MOGAT3	chromosome:C_jacchus3.2.1:2:1:204313951:1	10839605	10846508	D	monoacylglycerol O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:23249]
ENSCJAG00000015983	KNOWN_BY_PROJECTION	protein_coding	NAT16	chromosome:C_jacchus3.2.1:2:1:204313951:1	10873599	10875215	D	N-acetyltransferase 16 (GCN5-related, putative) [Source:HGNC Symbol;Acc:HGNC:22030]
ENSCJAG00000015980	KNOWN_BY_PROJECTION	protein_coding	VGF	chromosome:C_jacchus3.2.1:2:1:204313951:1	10882101	10884962	D	VGF nerve growth factor inducible [Source:HGNC Symbol;Acc:HGNC:12684]
ENSCJAG00000015968	KNOWN	protein_coding	AP1S1	chromosome:C_jacchus3.2.1:2:1:204313951:1	10887264	10893990	R	AP-1 complex subunit sigma-1A {ECO:0000313|EMBL:JAB08924.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029407}  [Source:UniProtKB/TrEMBL;Acc:F7I0L6]
ENSCJAG00000016798	KNOWN_BY_PROJECTION	protein_coding	NOXRED1	chromosome:C_jacchus3.2.1:10:1:132174527:1	102752297	102811372	R	NADP-dependent oxidoreductase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20487]
ENSCJAG00000012787	KNOWN_BY_PROJECTION	protein_coding	MTRF1L	chromosome:C_jacchus3.2.1:4:1:171630274:1	153924955	153940607	R	mitochondrial translational release factor 1-like [Source:HGNC Symbol;Acc:HGNC:21051]
ENSCJAG00000015954	KNOWN_BY_PROJECTION	protein_coding	SERPINE1	chromosome:C_jacchus3.2.1:2:1:204313951:1	10907061	10918612	R	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 [Source:HGNC Symbol;Acc:HGNC:8583]
ENSCJAG00000016801	KNOWN_BY_PROJECTION	protein_coding	VIPAS39	chromosome:C_jacchus3.2.1:10:1:132174527:1	102815975	102848062	R	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog [Source:HGNC Symbol;Acc:HGNC:20347]
ENSCJAG00000016837	KNOWN	protein_coding	AHSA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	102848696	102860850	D	Activator of 90 kDa heat shock protein ATPase homolog 1 {ECO:0000313|EMBL:JAB03879.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031058}  [Source:UniProtKB/TrEMBL;Acc:F7HYQ3]
ENSCJAG00000021578	KNOWN_BY_PROJECTION	protein_coding	NRD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	86831315	86926538	R	nardilysin (N-arginine dibasic convertase) [Source:HGNC Symbol;Acc:HGNC:7995]
ENSCJAG00000003943	KNOWN	protein_coding	MED25	chromosome:C_jacchus3.2.1:22:1:49145316:1	41729221	41804256	D	Mediator of RNA polymerase II transcription subunit 25 {ECO:0000313|EMBL:JAB38734.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007434}  [Source:UniProtKB/TrEMBL;Acc:F6PH86]
ENSCJAG00000032723	KNOWN_BY_PROJECTION	protein_coding	MUC17	chromosome:C_jacchus3.2.1:2:1:204313951:1	10987561	11015166	R	mucin 17, cell surface associated [Source:HGNC Symbol;Acc:HGNC:16800]
ENSCJAG00000000344	KNOWN_BY_PROJECTION	protein_coding	MUC12	chromosome:C_jacchus3.2.1:2:1:204313951:1	11026324	11039229	R	mucin 12, cell surface associated [Source:HGNC Symbol;Acc:HGNC:7510]
ENSCJAG00000000339	KNOWN_BY_PROJECTION	protein_coding	MUC3A	chromosome:C_jacchus3.2.1:2:1:204313951:1	11055741	11064220	R	mucin 3A, cell surface associated [Source:HGNC Symbol;Acc:HGNC:7513]
ENSCJAG00000014905	NOVEL	protein_coding	ENSCJAG00000014905	chromosome:C_jacchus3.2.1:2:1:204313951:1	11065647	11069151	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027445}  [Source:UniProtKB/TrEMBL;Acc:F7GH41]
ENSCJAG00000014906	KNOWN_BY_PROJECTION	protein_coding	ACHE	chromosome:C_jacchus3.2.1:2:1:204313951:1	11098020	11104014	D	acetylcholinesterase (Yt blood group) [Source:HGNC Symbol;Acc:HGNC:108]
ENSCJAG00000012783	KNOWN	protein_coding	RGS17	chromosome:C_jacchus3.2.1:4:1:171630274:1	153949056	153982940	R	Regulator of G-protein signaling 17 {ECO:0000313|EMBL:JAB18429.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023427}  [Source:UniProtKB/TrEMBL;Acc:F7ISK0]
ENSCJAG00000014917	KNOWN_BY_PROJECTION	protein_coding	SRRT	chromosome:C_jacchus3.2.1:2:1:204313951:1	11105303	11119140	R	serrate, RNA effector molecule [Source:HGNC Symbol;Acc:HGNC:24101]
ENSCJAG00000012747	KNOWN_BY_PROJECTION	protein_coding	OPRM1	chromosome:C_jacchus3.2.1:4:1:171630274:1	154878727	154990801	D	opioid receptor, mu 1 [Source:HGNC Symbol;Acc:HGNC:8156]
ENSCJAG00000016880	KNOWN_BY_PROJECTION	protein_coding	ISM2	chromosome:C_jacchus3.2.1:10:1:132174527:1	102866235	102885980	R	isthmin 2 [Source:HGNC Symbol;Acc:HGNC:23176]
ENSCJAG00000012736	NOVEL	protein_coding	ENSCJAG00000012736	chromosome:C_jacchus3.2.1:4:1:171630274:1	155038232	155233316	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023341}  [Source:UniProtKB/TrEMBL;Acc:F7I6F9]
ENSCJAG00000021579	NOVEL	protein_coding	ENSCJAG00000021579	chromosome:C_jacchus3.2.1:7:1:155834243:1	86967308	86968900	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040164}  [Source:UniProtKB/TrEMBL;Acc:F7I0E5]
ENSCJAG00000021580	KNOWN	protein_coding	RAB3B	chromosome:C_jacchus3.2.1:7:1:155834243:1	86988237	87081687	R	Ras-related protein Rab-3B {ECO:0000313|EMBL:JAB13293.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040165}  [Source:UniProtKB/TrEMBL;Acc:F7I0E4]
ENSCJAG00000021581	KNOWN	protein_coding	TXNDC12	chromosome:C_jacchus3.2.1:7:1:155834243:1	87109410	87148068	R	Thioredoxin domain-containing protein 12 {ECO:0000313|EMBL:JAB09832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040167}  [Source:UniProtKB/TrEMBL;Acc:F7I0E2]
ENSCJAG00000021582	NOVEL	protein_coding	ENSCJAG00000021582	chromosome:C_jacchus3.2.1:7:1:155834243:1	87149160	87181410	D	<no descrition>
ENSCJAG00000016903	KNOWN	protein_coding	SPTLC2	chromosome:C_jacchus3.2.1:10:1:132174527:1	102903487	103018693	R	Serine palmitoyltransferase 2 {ECO:0000313|EMBL:JAB05693.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031134}  [Source:UniProtKB/TrEMBL;Acc:F7IPL5]
ENSCJAG00000016929	NOVEL	pseudogene	ENSCJAG00000016929	chromosome:C_jacchus3.2.1:10:1:132174527:1	103023432	103023898	D	<no descrition>
ENSCJAG00000016933	NOVEL	protein_coding	ENSCJAG00000016933	chromosome:C_jacchus3.2.1:10:1:132174527:1	103029625	103030305	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031146}  [Source:UniProtKB/TrEMBL;Acc:F7IPJ6]
ENSCJAG00000016936	KNOWN	protein_coding	ALKBH1	chromosome:C_jacchus3.2.1:10:1:132174527:1	103071005	103103633	R	Alkylated DNA repair protein alkB homolog 1 {ECO:0000313|EMBL:JAB02752.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031165}  [Source:UniProtKB/TrEMBL;Acc:F7IM93]
ENSCJAG00000016946	KNOWN_BY_PROJECTION	protein_coding	SLIRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	103103728	103113802	D	SRA stem-loop interacting RNA binding protein [Source:HGNC Symbol;Acc:HGNC:20495]
ENSCJAG00000021583	KNOWN_BY_PROJECTION	protein_coding	ZYG11B	chromosome:C_jacchus3.2.1:7:1:155834243:1	87208428	87322692	R	zyg-11 family member B, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:25820]
ENSCJAG00000016947	KNOWN_BY_PROJECTION	protein_coding	SNW1	chromosome:C_jacchus3.2.1:10:1:132174527:1	103113846	103157967	R	SNW domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16696]
ENSCJAG00000021584	KNOWN	protein_coding	ENSCJAG00000021584	chromosome:C_jacchus3.2.1:7:1:155834243:1	87346806	87363052	D	Sel1 repeat-containing protein 1 {ECO:0000313|EMBL:JAB11348.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040172}  [Source:UniProtKB/TrEMBL;Acc:F7I0C8]
ENSCJAG00000021585	KNOWN	protein_coding	FAM159A	chromosome:C_jacchus3.2.1:7:1:155834243:1	87397083	87423327	R	Membrane protein FAM159A {ECO:0000313|EMBL:JAB12169.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040173}  [Source:UniProtKB/TrEMBL;Acc:F7I0C7]
ENSCJAG00000021586	KNOWN	protein_coding	GPX7	chromosome:C_jacchus3.2.1:7:1:155834243:1	87452762	87460096	R	Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}  [Source:UniProtKB/TrEMBL;Acc:F7I0C6]
ENSCJAG00000012720	KNOWN	protein_coding	CNKSR3	chromosome:C_jacchus3.2.1:4:1:171630274:1	155290374	155427453	R	Connector enhancer of kinase suppressor of ras 3 {ECO:0000313|EMBL:JAB07759.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023313}  [Source:UniProtKB/TrEMBL;Acc:F7IB55]
ENSCJAG00000021588	KNOWN	protein_coding	ZCCHC11	chromosome:C_jacchus3.2.1:7:1:155834243:1	87540851	87651176	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040179}  [Source:UniProtKB/TrEMBL;Acc:F7I0C1]
ENSCJAG00000004105	KNOWN_BY_PROJECTION	protein_coding	PTOV1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41762371	41772024	D	prostate tumor overexpressed 1 [Source:HGNC Symbol;Acc:HGNC:9632]
ENSCJAG00000014944	KNOWN	protein_coding	TRIP6	chromosome:C_jacchus3.2.1:2:1:204313951:1	11121010	11126948	R	Thyroid receptor-interacting protein 6 {ECO:0000313|EMBL:JAB22677.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027545}  [Source:UniProtKB/TrEMBL;Acc:F7DU15]
ENSCJAG00000012631	KNOWN_BY_PROJECTION	protein_coding	SCAF8	chromosome:C_jacchus3.2.1:4:1:171630274:1	155665830	155770323	D	SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
ENSCJAG00000004134	KNOWN_BY_PROJECTION	protein_coding	PNKP	chromosome:C_jacchus3.2.1:22:1:49145316:1	41772615	41779076	R	polynucleotide kinase 3'-phosphatase [Source:HGNC Symbol;Acc:HGNC:9154]
ENSCJAG00000017033	NOVEL	protein_coding	ENSCJAG00000017033	chromosome:C_jacchus3.2.1:10:1:132174527:1	103157789	103168808	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031306}  [Source:UniProtKB/TrEMBL;Acc:F7I0Z7]
ENSCJAG00000017038	KNOWN	protein_coding	ADCK1	chromosome:C_jacchus3.2.1:10:1:132174527:1	103205011	103350825	D	Putative aarF domain-containing protein kinase 1 isoform a {ECO:0000313|EMBL:JAB10552.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031346}  [Source:UniProtKB/TrEMBL;Acc:F7HSS8]
ENSCJAG00000014963	KNOWN_BY_PROJECTION	protein_coding	SLC12A9	chromosome:C_jacchus3.2.1:2:1:204313951:1	11127268	11144138	R	solute carrier family 12, member 9 [Source:HGNC Symbol;Acc:HGNC:17435]
ENSCJAG00000004153	KNOWN	protein_coding	AKT1S1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41781217	41789837	R	Proline-rich AKT1 substrate 1 isoform a {ECO:0000313|EMBL:JAB19214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007542}  [Source:UniProtKB/TrEMBL;Acc:F6RUS2]
ENSCJAG00000004185	KNOWN_BY_PROJECTION	protein_coding	IL4I1	chromosome:C_jacchus3.2.1:22:1:49145316:1	41805455	41819191	R	interleukin 4 induced 1 [Source:HGNC Symbol;Acc:HGNC:19094]
ENSCJAG00000034908	NOVEL	protein_coding	ENSCJAG00000034908	chromosome:C_jacchus3.2.1:10:1:132174527:1	103675885	103679207	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051740}  [Source:UniProtKB/TrEMBL;Acc:F7BZC0]
ENSCJAG00000017061	KNOWN_BY_PROJECTION	protein_coding	NRXN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	104101691	104457881	D	neurexin 3 [Source:HGNC Symbol;Acc:HGNC:8010]
ENSCJAG00000034159	NOVEL	pseudogene	ENSCJAG00000034159	chromosome:C_jacchus3.2.1:10:1:132174527:1	105351325	105352251	D	<no descrition>
ENSCJAG00000017085	KNOWN_BY_PROJECTION	protein_coding	DIO2	chromosome:C_jacchus3.2.1:10:1:132174527:1	105691336	105707154	R	deiodinase, iodothyronine, type II [Source:HGNC Symbol;Acc:HGNC:2884]
ENSCJAG00000021594	KNOWN	protein_coding	PRPF38A	chromosome:C_jacchus3.2.1:7:1:155834243:1	87657256	87670520	R	Pre-mRNA-splicing factor 38A {ECO:0000313|EMBL:JAB02761.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040192}  [Source:UniProtKB/TrEMBL;Acc:F7HY13]
ENSCJAG00000004201	KNOWN	protein_coding	ENSCJAG00000004201	chromosome:C_jacchus3.2.1:22:1:49145316:1	41825712	41847646	R	Nuclear pore glycoprotein p62 {ECO:0000313|EMBL:JAB02898.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052020}  [Source:UniProtKB/TrEMBL;Acc:F7IJB9]
ENSCJAG00000012657	NOVEL	protein_coding	ENSCJAG00000012657	chromosome:C_jacchus3.2.1:8:1:128169293:1	6143205	6147871	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023171}  [Source:UniProtKB/TrEMBL;Acc:F7HUS8]
ENSCJAG00000012658	KNOWN_BY_PROJECTION	protein_coding	AMPH	chromosome:C_jacchus3.2.1:8:1:128169293:1	6172444	6410475	R	amphiphysin [Source:HGNC Symbol;Acc:HGNC:471]
ENSCJAG00000012559	KNOWN_BY_PROJECTION	protein_coding	TIAM2	chromosome:C_jacchus3.2.1:4:1:171630274:1	155955106	156215151	D	T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
ENSCJAG00000014974	KNOWN	protein_coding	EPHB4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11171722	11199996	D	Ephrin type-B receptor 4 {ECO:0000313|EMBL:JAB11637.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027630}  [Source:UniProtKB/TrEMBL;Acc:F7GUF2]
ENSCJAG00000004209	KNOWN	protein_coding	ATF5	chromosome:C_jacchus3.2.1:22:1:49145316:1	41847335	41906715	D	Cyclic AMP-dependent transcription factor ATF-5 {ECO:0000313|EMBL:JAB02901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007632}  [Source:UniProtKB/TrEMBL;Acc:F6PGW0]
ENSCJAG00000004218	NOVEL	protein_coding	ENSCJAG00000004218	chromosome:C_jacchus3.2.1:22:1:49145316:1	41867800	41873351	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007654}  [Source:UniProtKB/TrEMBL;Acc:F6TZ96]
ENSCJAG00000012686	KNOWN_BY_PROJECTION	protein_coding	VPS41	chromosome:C_jacchus3.2.1:8:1:128169293:1	6494383	6667826	R	vacuolar protein sorting 41 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12713]
ENSCJAG00000004228	KNOWN_BY_PROJECTION	protein_coding	VRK3	chromosome:C_jacchus3.2.1:22:1:49145316:1	41880756	41928984	R	vaccinia related kinase 3 [Source:HGNC Symbol;Acc:HGNC:18996]
ENSCJAG00000021595	KNOWN_BY_PROJECTION	protein_coding	ORC1	chromosome:C_jacchus3.2.1:7:1:155834243:1	87679186	87797132	D	origin recognition complex, subunit 1 [Source:HGNC Symbol;Acc:HGNC:8487]
ENSCJAG00000021596	KNOWN_BY_PROJECTION	protein_coding	CC2D1B	chromosome:C_jacchus3.2.1:7:1:155834243:1	87715898	87729104	D	coiled-coil and C2 domain containing 1B [Source:HGNC Symbol;Acc:HGNC:29386]
ENSCJAG00000017088	KNOWN_BY_PROJECTION	protein_coding	CEP128	chromosome:C_jacchus3.2.1:10:1:132174527:1	105974364	106436976	R	centrosomal protein 128kDa [Source:HGNC Symbol;Acc:HGNC:20359]
ENSCJAG00000017138	NOVEL	pseudogene	ENSCJAG00000017138	chromosome:C_jacchus3.2.1:10:1:132174527:1	106039306	106039926	D	<no descrition>
ENSCJAG00000007618	KNOWN_BY_PROJECTION	protein_coding	POU6F2	chromosome:C_jacchus3.2.1:8:1:128169293:1	6838197	7221456	D	POU class 6 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:21694]
ENSCJAG00000007624	KNOWN	protein_coding	YAE1D1	chromosome:C_jacchus3.2.1:8:1:128169293:1	7344252	7389716	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014136}; Yae1 domain-containing protein 1 {ECO:0000313|EMBL:JAB03520.1}  [Source:UniProtKB/TrEMBL;Acc:F7IGN5]
ENSCJAG00000007630	KNOWN	protein_coding	RALA	chromosome:C_jacchus3.2.1:8:1:128169293:1	7403280	7486298	D	Ras-related protein Ral-A {ECO:0000313|EMBL:JAB04041.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014147}  [Source:UniProtKB/TrEMBL;Acc:F7IEB0]
ENSCJAG00000017144	KNOWN_BY_PROJECTION	protein_coding	TSHR	chromosome:C_jacchus3.2.1:10:1:132174527:1	106449710	106608980	D	thyroid stimulating hormone receptor [Source:HGNC Symbol;Acc:HGNC:12373]
ENSCJAG00000015012	KNOWN_BY_PROJECTION	protein_coding	ZAN	chromosome:C_jacchus3.2.1:2:1:204313951:1	11205985	11270971	R	zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
ENSCJAG00000007639	NOVEL	protein_coding	ENSCJAG00000007639	chromosome:C_jacchus3.2.1:8:1:128169293:1	7547634	7548550	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014149}  [Source:UniProtKB/TrEMBL;Acc:F7IEA7]
ENSCJAG00000007641	KNOWN_BY_PROJECTION	protein_coding	CDK13	chromosome:C_jacchus3.2.1:8:1:128169293:1	7601049	7726565	D	cyclin-dependent kinase 13 [Source:HGNC Symbol;Acc:HGNC:1733]
ENSCJAG00000004254	NOVEL	protein_coding	ENSCJAG00000004254	chromosome:C_jacchus3.2.1:22:1:49145316:1	41935503	41941700	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007700}  [Source:UniProtKB/TrEMBL;Acc:F6Y8W2]
ENSCJAG00000012540	KNOWN_BY_PROJECTION	protein_coding	TFB1M	chromosome:C_jacchus3.2.1:4:1:171630274:1	156212179	156268571	R	transcription factor B1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:17037]
ENSCJAG00000007653	KNOWN	protein_coding	MPLKIP	chromosome:C_jacchus3.2.1:8:1:128169293:1	7754234	7756150	R	M-phase-specific PLK1-interacting protein {ECO:0000313|EMBL:JAB01720.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014181}  [Source:UniProtKB/TrEMBL;Acc:F7I779]
ENSCJAG00000007656	KNOWN	protein_coding	C7ORF10	chromosome:C_jacchus3.2.1:8:1:128169293:1	7756493	8115034	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014198}  [Source:UniProtKB/TrEMBL;Acc:F7I4V5]
ENSCJAG00000004260	KNOWN_BY_PROJECTION	protein_coding	IZUMO2	chromosome:C_jacchus3.2.1:22:1:49145316:1	41976671	41986862	R	IZUMO family member 2 [Source:HGNC Symbol;Acc:HGNC:28518]
ENSCJAG00000012557	KNOWN_BY_PROJECTION	protein_coding	CLDN20	chromosome:C_jacchus3.2.1:4:1:171630274:1	156218632	156229922	D	claudin 20 [Source:HGNC Symbol;Acc:HGNC:2042]
ENSCJAG00000012516	KNOWN_BY_PROJECTION	protein_coding	NOX3	chromosome:C_jacchus3.2.1:4:1:171630274:1	156362368	156421977	R	NADPH oxidase 3 [Source:HGNC Symbol;Acc:HGNC:7890]
ENSCJAG00000021597	KNOWN_BY_PROJECTION	protein_coding	ZFYVE9	chromosome:C_jacchus3.2.1:7:1:155834243:1	87735036	87870958	R	zinc finger, FYVE domain containing 9 [Source:HGNC Symbol;Acc:HGNC:6775]
ENSCJAG00000004268	KNOWN_BY_PROJECTION	protein_coding	MYH14	chromosome:C_jacchus3.2.1:22:1:49145316:1	42034763	42125215	D	myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:HGNC:23212]
ENSCJAG00000007667	NOVEL	pseudogene	ENSCJAG00000007667	chromosome:C_jacchus3.2.1:8:1:128169293:1	7883480	7884508	R	<no descrition>
ENSCJAG00000007677	NOVEL	protein_coding	ENSCJAG00000007677	chromosome:C_jacchus3.2.1:8:1:128169293:1	9137845	9138491	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014221}  [Source:UniProtKB/TrEMBL;Acc:F7HVD7]
ENSCJAG00000007682	KNOWN_BY_PROJECTION	protein_coding	INHBA	chromosome:C_jacchus3.2.1:8:1:128169293:1	9272010	9285957	R	inhibin, beta A [Source:HGNC Symbol;Acc:HGNC:6066]
ENSCJAG00000007690	KNOWN_BY_PROJECTION	protein_coding	GLI3	chromosome:C_jacchus3.2.1:8:1:128169293:1	9552979	9837547	R	GLI family zinc finger 3 [Source:HGNC Symbol;Acc:HGNC:4319]
ENSCJAG00000012512	NOVEL	pseudogene	ENSCJAG00000012512	chromosome:C_jacchus3.2.1:4:1:171630274:1	157593874	157594269	D	<no descrition>
ENSCJAG00000015048	KNOWN_BY_PROJECTION	protein_coding	EPO	chromosome:C_jacchus3.2.1:2:1:204313951:1	11290626	11293833	R	erythropoietin [Source:HGNC Symbol;Acc:HGNC:3415]
ENSCJAG00000007729	KNOWN_BY_PROJECTION	protein_coding	C7orf25	chromosome:C_jacchus3.2.1:8:1:128169293:1	10451387	10454481	R	chromosome 7 open reading frame 25 [Source:HGNC Symbol;Acc:HGNC:21703]
ENSCJAG00000015056	KNOWN	protein_coding	POP7	chromosome:C_jacchus3.2.1:2:1:204313951:1	11308944	11310422	R	Ribonuclease P protein subunit p20 {ECO:0000313|EMBL:JAB11432.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027734}  [Source:UniProtKB/TrEMBL;Acc:F7DTG5]
ENSCJAG00000012474	KNOWN_BY_PROJECTION	protein_coding	ARID1B	chromosome:C_jacchus3.2.1:4:1:171630274:1	157856334	158235803	D	AT rich interactive domain 1B (SWI1-like) [Source:HGNC Symbol;Acc:HGNC:18040]
ENSCJAG00000007730	KNOWN_BY_PROJECTION	protein_coding	PSMA2	chromosome:C_jacchus3.2.1:8:1:128169293:1	10459882	10475295	R	proteasome (prosome, macropain) subunit, alpha type, 2 [Source:HGNC Symbol;Acc:HGNC:9531]
ENSCJAG00000017167	NOVEL	protein_coding	ENSCJAG00000017167	chromosome:C_jacchus3.2.1:10:1:132174527:1	106497899	106498537	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031549}  [Source:UniProtKB/TrEMBL;Acc:F7HW20]
ENSCJAG00000015057	KNOWN_BY_PROJECTION	protein_coding	GIGYF1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11327350	11333764	D	GRB10 interacting GYF protein 1 [Source:HGNC Symbol;Acc:HGNC:9126]
ENSCJAG00000007749	KNOWN_BY_PROJECTION	protein_coding	MRPL32	chromosome:C_jacchus3.2.1:8:1:128169293:1	10475436	10481093	D	mitochondrial ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:14035]
ENSCJAG00000017169	KNOWN	protein_coding	GTF2A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	106671684	106716810	R	Transcription initiation factor IIA subunit 1 isoform 1 {ECO:0000313|EMBL:JAB08539.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031621}  [Source:UniProtKB/TrEMBL;Acc:F7IH84]
ENSCJAG00000021599	NOVEL	protein_coding	ENSCJAG00000021599	chromosome:C_jacchus3.2.1:7:1:155834243:1	87876362	87877497	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040204}  [Source:UniProtKB/TrEMBL;Acc:F7INU6]
ENSCJAG00000007763	NOVEL	pseudogene	ENSCJAG00000007763	chromosome:C_jacchus3.2.1:8:1:128169293:1	10537623	10538172	D	<no descrition>
ENSCJAG00000004369	KNOWN_BY_PROJECTION	protein_coding	ZYG11A	chromosome:C_jacchus3.2.1:7:1:155834243:1	88054953	88108103	D	zyg-11 family member A, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:32058]
ENSCJAG00000004396	KNOWN_BY_PROJECTION	protein_coding	KCNC3	chromosome:C_jacchus3.2.1:22:1:49145316:1	42135487	42139375	R	potassium channel, voltage gated Shaw related subfamily C, member 3 [Source:HGNC Symbol;Acc:HGNC:6235]
ENSCJAG00000007768	KNOWN_BY_PROJECTION	protein_coding	HECW1	chromosome:C_jacchus3.2.1:8:1:128169293:1	10979963	11147195	D	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:22195]
ENSCJAG00000004417	KNOWN_BY_PROJECTION	protein_coding	NAPSA	chromosome:C_jacchus3.2.1:22:1:49145316:1	42148259	42171826	R	napsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]
ENSCJAG00000015074	KNOWN	protein_coding	GNB2	chromosome:C_jacchus3.2.1:2:1:204313951:1	11336263	11341563	R	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 {ECO:0000313|EMBL:JAB10108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027836}  [Source:UniProtKB/TrEMBL;Acc:F7GNL2]
ENSCJAG00000003452	KNOWN	protein_coding	TMEM242	chromosome:C_jacchus3.2.1:4:1:171630274:1	158309552	158341634	R	Transmembrane protein 242 {ECO:0000313|EMBL:JAB06453.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006283}  [Source:UniProtKB/TrEMBL;Acc:F7G9P5]
ENSCJAG00000017200	KNOWN_BY_PROJECTION	protein_coding	STON2	chromosome:C_jacchus3.2.1:10:1:132174527:1	106757819	106889818	R	stonin 2 [Source:HGNC Symbol;Acc:HGNC:30652]
ENSCJAG00000007799	KNOWN	protein_coding	STK17A	chromosome:C_jacchus3.2.1:8:1:128169293:1	11166149	11220916	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014482}  [Source:UniProtKB/TrEMBL;Acc:F7HQ36]
ENSCJAG00000007819	NOVEL	pseudogene	ENSCJAG00000007819	chromosome:C_jacchus3.2.1:8:1:128169293:1	11175855	11176364	D	<no descrition>
ENSCJAG00000007826	KNOWN_BY_PROJECTION	protein_coding	COA1	chromosome:C_jacchus3.2.1:8:1:128169293:1	11252957	11266392	R	cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:21868]
ENSCJAG00000007829	KNOWN	protein_coding	BLVRA	chromosome:C_jacchus3.2.1:8:1:128169293:1	11377148	11422708	D	Biliverdin reductase A {ECO:0000313|EMBL:JAB38651.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014516}  [Source:UniProtKB/TrEMBL;Acc:F7IL44]
ENSCJAG00000004439	KNOWN_BY_PROJECTION	protein_coding	NR1H2	chromosome:C_jacchus3.2.1:22:1:49145316:1	42188059	42196348	D	nuclear receptor subfamily 1, group H, member 2 [Source:HGNC Symbol;Acc:HGNC:7965]
ENSCJAG00000007842	KNOWN	protein_coding	MRPS24	chromosome:C_jacchus3.2.1:8:1:128169293:1	11445701	11448329	R	28S ribosomal protein S24, mitochondrial {ECO:0000313|EMBL:JAB01820.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014526}  [Source:UniProtKB/TrEMBL;Acc:F7IL29]
ENSCJAG00000007849	NOVEL	protein_coding	ENSCJAG00000007849	chromosome:C_jacchus3.2.1:8:1:128169293:1	11457533	11495288	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014573}  [Source:UniProtKB/TrEMBL;Acc:F7IDX1]
ENSCJAG00000033418	NOVEL	pseudogene	ENSCJAG00000033418	chromosome:C_jacchus3.2.1:4:1:171630274:1	158319361	158320499	R	<no descrition>
ENSCJAG00000003465	KNOWN_BY_PROJECTION	protein_coding	ZDHHC14	chromosome:C_jacchus3.2.1:4:1:171630274:1	158409856	158713514	D	zinc finger, DHHC-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20341]
ENSCJAG00000004375	KNOWN	protein_coding	ECHDC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	88108855	88138492	R	Enoyl-CoA hydratase domain-containing protein 2, mitochondrial isoform 2 {ECO:0000313|EMBL:JAB18601.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007952}  [Source:UniProtKB/TrEMBL;Acc:F6Z962]
ENSCJAG00000017220	KNOWN	protein_coding	SEL1L	chromosome:C_jacchus3.2.1:10:1:132174527:1	106970757	107034828	R	Protein sel-1 homolog 1 isoform 1 {ECO:0000313|EMBL:JAB01864.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031721}  [Source:UniProtKB/TrEMBL;Acc:F7HYD5]
ENSCJAG00000004478	NOVEL	protein_coding	ENSCJAG00000004478	chromosome:C_jacchus3.2.1:22:1:49145316:1	42231947	42236883	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008113}  [Source:UniProtKB/TrEMBL;Acc:F7HWU3]
ENSCJAG00000007875	KNOWN	protein_coding	UBE2D4	chromosome:C_jacchus3.2.1:8:1:128169293:1	11518236	11547915	D	Ubiquitin-conjugating enzyme E2 D4 {ECO:0000313|EMBL:JAB04866.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014610}  [Source:UniProtKB/TrEMBL;Acc:F7I4H3]
ENSCJAG00000007794	KNOWN_BY_PROJECTION	protein_coding	MYBPC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	42246617	42282756	D	myosin binding protein C, fast type [Source:HGNC Symbol;Acc:HGNC:7550]
ENSCJAG00000004392	KNOWN	protein_coding	SCP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	88148057	88290979	D	Non-specific lipid-transfer protein isoform 1 proprotein {ECO:0000313|EMBL:JAB03461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050259}  [Source:UniProtKB/TrEMBL;Acc:F7EZA5]
ENSCJAG00000003470	KNOWN	protein_coding	SNX9	chromosome:C_jacchus3.2.1:4:1:171630274:1	158856251	158973087	D	Sorting nexin {ECO:0000256|PIRNR:PIRNR027744}  [Source:UniProtKB/TrEMBL;Acc:F7GVW5]
ENSCJAG00000017245	NOVEL	protein_coding	ENSCJAG00000017245	chromosome:C_jacchus3.2.1:10:1:132174527:1	108707610	108708701	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031726}  [Source:UniProtKB/TrEMBL;Acc:F7HYC8]
ENSCJAG00000021919	NOVEL	protein_coding	ENSCJAG00000021919	chromosome:C_jacchus3.2.1:10:1:132174527:1	109144290	109145909	D	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F7IGI5]
ENSCJAG00000017248	NOVEL	pseudogene	ENSCJAG00000017248	chromosome:C_jacchus3.2.1:10:1:132174527:1	111113941	111114226	R	<no descrition>
ENSCJAG00000017249	KNOWN	protein_coding	FLRT2	chromosome:C_jacchus3.2.1:10:1:132174527:1	111114383	111215241	D	Leucine-rich repeat transmembrane protein FLRT2 {ECO:0000313|EMBL:JAB15373.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031729}  [Source:UniProtKB/TrEMBL;Acc:F7HYC2]
ENSCJAG00000017252	NOVEL	protein_coding	ENSCJAG00000017252	chromosome:C_jacchus3.2.1:10:1:132174527:1	111670103	111673528	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031737}  [Source:UniProtKB/TrEMBL;Acc:F7HW17]
ENSCJAG00000003644	KNOWN_BY_PROJECTION	protein_coding	FAM71E1	chromosome:C_jacchus3.2.1:22:1:49145316:1	42287503	42292804	R	family with sequence similarity 71, member E1 [Source:HGNC Symbol;Acc:HGNC:25107]
ENSCJAG00000007899	KNOWN	protein_coding	DBNL	chromosome:C_jacchus3.2.1:8:1:128169293:1	11553866	11569239	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014646}  [Source:UniProtKB/TrEMBL;Acc:F7I230]
ENSCJAG00000017257	NOVEL	pseudogene	ENSCJAG00000017257	chromosome:C_jacchus3.2.1:10:1:132174527:1	112422482	112423166	D	<no descrition>
ENSCJAG00000007923	KNOWN	protein_coding	PGAM2	chromosome:C_jacchus3.2.1:8:1:128169293:1	11571408	11573932	R	Phosphoglycerate mutase 2 {ECO:0000313|EMBL:JAB03598.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014661}  [Source:UniProtKB/TrEMBL;Acc:F7HXH1]
ENSCJAG00000017259	KNOWN_BY_PROJECTION	protein_coding	GALC	chromosome:C_jacchus3.2.1:10:1:132174527:1	113394593	113460660	R	galactosylceramidase [Source:HGNC Symbol;Acc:HGNC:4115]
ENSCJAG00000015213	KNOWN_BY_PROJECTION	protein_coding	FBXO24	chromosome:C_jacchus3.2.1:2:1:204313951:1	11344032	11434668	R	F-box protein 24 [Source:HGNC Symbol;Acc:HGNC:13595]
ENSCJAG00000003629	KNOWN_BY_PROJECTION	protein_coding	EMC10	chromosome:C_jacchus3.2.1:22:1:49145316:1	42292937	42299891	D	ER membrane protein complex subunit 10 [Source:HGNC Symbol;Acc:HGNC:27609]
ENSCJAG00000007934	NOVEL	protein_coding	ENSCJAG00000007934	chromosome:C_jacchus3.2.1:8:1:128169293:1	11583521	11587814	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014663}  [Source:UniProtKB/TrEMBL;Acc:F7HXH0]
ENSCJAG00000017208	KNOWN	protein_coding	JOSD2	chromosome:C_jacchus3.2.1:22:1:49145316:1	42331540	42335899	R	Josephin-2 isoform 1 {ECO:0000313|EMBL:JAB01857.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031656}  [Source:UniProtKB/TrEMBL;Acc:F7IA72]
ENSCJAG00000017216	KNOWN_BY_PROJECTION	protein_coding	ASPDH	chromosome:C_jacchus3.2.1:22:1:49145316:1	42336321	42341110	R	aspartate dehydrogenase domain containing [Source:HGNC Symbol;Acc:HGNC:33856]
ENSCJAG00000017224	KNOWN	protein_coding	LRRC4B	chromosome:C_jacchus3.2.1:22:1:49145316:1	42343503	42391413	R	Leucine-rich repeat-containing protein 4B {ECO:0000313|EMBL:JAB28433.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031679}  [Source:UniProtKB/TrEMBL;Acc:F7I7S5]
ENSCJAG00000007936	KNOWN_BY_PROJECTION	protein_coding	AEBP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	11615853	11624429	D	AE binding protein 1 [Source:HGNC Symbol;Acc:HGNC:303]
ENSCJAG00000017227	KNOWN	protein_coding	SYT3	chromosome:C_jacchus3.2.1:22:1:49145316:1	42449620	42465516	R	Synaptotagmin-3 {ECO:0000313|EMBL:JAB29883.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031713}  [Source:UniProtKB/TrEMBL;Acc:F7I0N6]
ENSCJAG00000004441	KNOWN	protein_coding	PGAM1	chromosome:C_jacchus3.2.1:7:1:155834243:1	88210712	88213629	R	Callithrix jacchus phosphoglycerate mutase 1 (brain) (PGAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001253767]
ENSCJAG00000007954	KNOWN_BY_PROJECTION	protein_coding	POLD2	chromosome:C_jacchus3.2.1:8:1:128169293:1	11624751	11633269	R	polymerase (DNA directed), delta 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9176]
ENSCJAG00000003570	KNOWN_BY_PROJECTION	protein_coding	SYNJ2	chromosome:C_jacchus3.2.1:4:1:171630274:1	159009240	159131916	D	synaptojanin 2 [Source:HGNC Symbol;Acc:HGNC:11504]
ENSCJAG00000015106	KNOWN	protein_coding	ACTL6B	chromosome:C_jacchus3.2.1:2:1:204313951:1	11360270	11371788	D	Actin-like protein 6B {ECO:0000313|EMBL:JAB22630.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027896}  [Source:UniProtKB/TrEMBL;Acc:F7FRF7]
ENSCJAG00000032438	KNOWN_BY_PROJECTION	protein_coding	C19orf81	chromosome:C_jacchus3.2.1:22:1:49145316:1	42473086	42484076	D	chromosome 19 open reading frame 81 [Source:HGNC Symbol;Acc:HGNC:40041]
ENSCJAG00000008015	KNOWN_BY_PROJECTION	protein_coding	MYL7	chromosome:C_jacchus3.2.1:8:1:128169293:1	11648731	11651144	R	myosin, light chain 7, regulatory [Source:HGNC Symbol;Acc:HGNC:21719]
ENSCJAG00000016713	KNOWN_BY_PROJECTION	protein_coding	SHANK1	chromosome:C_jacchus3.2.1:22:1:49145316:1	42495573	42548296	R	SH3 and multiple ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:HGNC:15474]
ENSCJAG00000016708	KNOWN_BY_PROJECTION	protein_coding	CLEC11A	chromosome:C_jacchus3.2.1:22:1:49145316:1	42554333	42559281	D	C-type lectin domain family 11, member A [Source:HGNC Symbol;Acc:HGNC:10576]
ENSCJAG00000008025	KNOWN	protein_coding	GCK	chromosome:C_jacchus3.2.1:8:1:128169293:1	11653320	11692964	R	Glucokinase isoform 1 {ECO:0000313|EMBL:JAB21382.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014864}  [Source:UniProtKB/TrEMBL;Acc:F7I6N3]
ENSCJAG00000016704	KNOWN_BY_PROJECTION	protein_coding	GPR32	chromosome:C_jacchus3.2.1:22:1:49145316:1	42589775	42602339	D	G protein-coupled receptor 32 [Source:HGNC Symbol;Acc:HGNC:4487]
ENSCJAG00000035219	NOVEL	protein_coding	ENSCJAG00000035219	chromosome:C_jacchus3.2.1:22:1:49145316:1	42620838	42621315	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046508}  [Source:UniProtKB/TrEMBL;Acc:F7IAW4]
ENSCJAG00000016684	KNOWN_BY_PROJECTION	protein_coding	ACPT	chromosome:C_jacchus3.2.1:22:1:49145316:1	42625637	42631390	D	acid phosphatase, testicular [Source:HGNC Symbol;Acc:HGNC:14376]
ENSCJAG00000017275	KNOWN	protein_coding	GPR65	chromosome:C_jacchus3.2.1:10:1:132174527:1	113471826	113478751	D	Psychosine receptor {ECO:0000313|EMBL:JAB21797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042095}  [Source:UniProtKB/TrEMBL;Acc:F6R6D5]
ENSCJAG00000003587	KNOWN	protein_coding	SERAC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	159149835	159206949	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006588}  [Source:UniProtKB/TrEMBL;Acc:F7DHZ6]
ENSCJAG00000004449	KNOWN_BY_PROJECTION	protein_coding	PODN	chromosome:C_jacchus3.2.1:7:1:155834243:1	88301927	88326012	D	podocan [Source:HGNC Symbol;Acc:HGNC:23174]
ENSCJAG00000016668	KNOWN_BY_PROJECTION	protein_coding	KLK1	chromosome:C_jacchus3.2.1:22:1:49145316:1	42650775	42666661	R	kallikrein 1 [Source:HGNC Symbol;Acc:HGNC:6357]
ENSCJAG00000008053	KNOWN	protein_coding	YKT6	chromosome:C_jacchus3.2.1:8:1:128169293:1	11701050	11713959	D	Synaptobrevin homolog YKT6 {ECO:0000313|EMBL:JAB05107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014904}  [Source:UniProtKB/TrEMBL;Acc:F7HXA8]
ENSCJAG00000017280	KNOWN	protein_coding	KCNK10	chromosome:C_jacchus3.2.1:10:1:132174527:1	113652254	113812289	R	Potassium channel subfamily K member 10 isoform 2 {ECO:0000313|EMBL:JAB25311.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031809}  [Source:UniProtKB/TrEMBL;Acc:F7IJI0]
ENSCJAG00000016648	KNOWN_BY_PROJECTION	protein_coding	KLK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	42686597	42691217	D	kallikrein-related peptidase 2 [Source:HGNC Symbol;Acc:HGNC:6363]
ENSCJAG00000003638	KNOWN	protein_coding	GTF2H5	chromosome:C_jacchus3.2.1:4:1:171630274:1	159207039	159224346	D	General transcription factor IIH subunit 5 {ECO:0000313|EMBL:JAB03115.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006606}  [Source:UniProtKB/TrEMBL;Acc:F7HBD9]
ENSCJAG00000003647	NOVEL	protein_coding	ENSCJAG00000003647	chromosome:C_jacchus3.2.1:4:1:171630274:1	159266719	159267435	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006613}  [Source:UniProtKB/TrEMBL;Acc:F7HBB3]
ENSCJAG00000003653	KNOWN	protein_coding	TULP4	chromosome:C_jacchus3.2.1:4:1:171630274:1	159339483	159548278	D	Tubby-related protein 4 isoform 1 {ECO:0000313|EMBL:JAB07236.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006647}  [Source:UniProtKB/TrEMBL;Acc:F7H5W1]
ENSCJAG00000016629	KNOWN_BY_PROJECTION	protein_coding	KLK4	chromosome:C_jacchus3.2.1:22:1:49145316:1	42703518	42743349	R	kallikrein-related peptidase 4 [Source:HGNC Symbol;Acc:HGNC:6365]
ENSCJAG00000017294	KNOWN	protein_coding	SPATA7	chromosome:C_jacchus3.2.1:10:1:132174527:1	113864271	113921155	D	Spermatogenesis-associated protein 7 isoform 2 {ECO:0000313|EMBL:JAB05689.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031873}  [Source:UniProtKB/TrEMBL;Acc:F7I9Z0]
ENSCJAG00000034779	NOVEL	protein_coding	ENSCJAG00000034779	chromosome:C_jacchus3.2.1:4:1:171630274:1	159626431	159661938	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006705}  [Source:UniProtKB/TrEMBL;Acc:F7F3K4]
ENSCJAG00000003675	NOVEL	protein_coding	ENSCJAG00000003675	chromosome:C_jacchus3.2.1:4:1:171630274:1	159681944	159691965	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006729}  [Source:UniProtKB/TrEMBL;Acc:F7F3A1]
ENSCJAG00000003718	KNOWN	protein_coding	DYNLT1	chromosome:C_jacchus3.2.1:4:1:171630274:1	159696303	159704331	R	Dynein light chain Tctex-type 1 {ECO:0000313|EMBL:JAB02508.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006743}  [Source:UniProtKB/TrEMBL;Acc:F7F2V6]
ENSCJAG00000031802	NOVEL	protein_coding	ENSCJAG00000031802	chromosome:C_jacchus3.2.1:4:1:171630274:1	159717419	159718503	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052237}  [Source:UniProtKB/TrEMBL;Acc:F7ILE7]
ENSCJAG00000017324	KNOWN_BY_PROJECTION	protein_coding	PTPN21	chromosome:C_jacchus3.2.1:10:1:132174527:1	113940866	114020829	R	protein tyrosine phosphatase, non-receptor type 21 [Source:HGNC Symbol;Acc:HGNC:9651]
ENSCJAG00000008079	KNOWN_BY_PROJECTION	protein_coding	CAMK2B	chromosome:C_jacchus3.2.1:8:1:128169293:1	11716811	11830570	R	calcium/calmodulin-dependent protein kinase II beta [Source:HGNC Symbol;Acc:HGNC:1461]
ENSCJAG00000035952	KNOWN	protein_coding	KLK6	chromosome:C_jacchus3.2.1:22:1:49145316:1	42732386	42760424	R	Kallikrein-6 isoform A preproprotein {ECO:0000313|EMBL:JAB13887.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030592}  [Source:UniProtKB/TrEMBL;Acc:F6V4G1]
ENSCJAG00000003730	KNOWN_BY_PROJECTION	protein_coding	SYTL3	chromosome:C_jacchus3.2.1:4:1:171630274:1	159721610	159819526	D	synaptotagmin-like 3 [Source:HGNC Symbol;Acc:HGNC:15587]
ENSCJAG00000016610	KNOWN	protein_coding	KLK7	chromosome:C_jacchus3.2.1:22:1:49145316:1	42770579	42917732	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030573}  [Source:UniProtKB/TrEMBL;Acc:F6VQ46]
ENSCJAG00000006269	KNOWN_BY_PROJECTION	protein_coding	KLK8	chromosome:C_jacchus3.2.1:22:1:49145316:1	42790718	42799211	R	kallikrein-related peptidase 8 [Source:HGNC Symbol;Acc:HGNC:6369]
ENSCJAG00000004493	KNOWN_BY_PROJECTION	protein_coding	SLC1A7	chromosome:C_jacchus3.2.1:7:1:155834243:1	88328526	88381601	R	solute carrier family 1 (glutamate transporter), member 7 [Source:HGNC Symbol;Acc:HGNC:10945]
ENSCJAG00000017345	KNOWN_BY_PROJECTION	protein_coding	ZC3H14	chromosome:C_jacchus3.2.1:10:1:132174527:1	114034597	114086938	D	zinc finger CCCH-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20509]
ENSCJAG00000015136	KNOWN_BY_PROJECTION	protein_coding	TFR2	chromosome:C_jacchus3.2.1:2:1:204313951:1	11373803	11396277	D	transferrin receptor 2 [Source:HGNC Symbol;Acc:HGNC:11762]
ENSCJAG00000038106	NOVEL	protein_coding	ENSCJAG00000038106	chromosome:C_jacchus3.2.1:22:1:49145316:1	42799191	42805476	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011546}  [Source:UniProtKB/TrEMBL;Acc:F7IB01]
ENSCJAG00000004512	KNOWN	protein_coding	CPT2	chromosome:C_jacchus3.2.1:7:1:155834243:1	88426597	88449383	D	Carnitine O-palmitoyltransferase 2, mitochondrial {ECO:0000313|EMBL:JAB23114.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008185}  [Source:UniProtKB/TrEMBL;Acc:F7IPZ3]
ENSCJAG00000006295	KNOWN_BY_PROJECTION	protein_coding	KLK10	chromosome:C_jacchus3.2.1:22:1:49145316:1	42810053	42815130	R	kallikrein-related peptidase 10 [Source:HGNC Symbol;Acc:HGNC:6358]
ENSCJAG00000004526	KNOWN	protein_coding	C1ORF123	chromosome:C_jacchus3.2.1:7:1:155834243:1	88449286	88457079	R	UPF0587 protein C1orf123 {ECO:0000313|EMBL:JAB02003.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008213}  [Source:UniProtKB/TrEMBL;Acc:F7IHX3]
ENSCJAG00000004538	KNOWN	protein_coding	MAGOH	chromosome:C_jacchus3.2.1:7:1:155834243:1	88463588	88471570	R	Protein mago nashi homolog {ECO:0000313|EMBL:JAB06870.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008242}  [Source:UniProtKB/TrEMBL;Acc:F7ID78]
ENSCJAG00000006302	KNOWN_BY_PROJECTION	protein_coding	KLK11	chromosome:C_jacchus3.2.1:22:1:49145316:1	42817606	42833662	R	kallikrein-related peptidase 11 [Source:HGNC Symbol;Acc:HGNC:6359]
ENSCJAG00000018613	KNOWN_BY_PROJECTION	protein_coding	SIGLEC6	chromosome:C_jacchus3.2.1:22:1:49145316:1	42905420	42909583	D	sialic acid binding Ig-like lectin 6 [Source:HGNC Symbol;Acc:HGNC:10875]
ENSCJAG00000003763	NOVEL	protein_coding	ENSCJAG00000003763	chromosome:C_jacchus3.2.1:4:1:171630274:1	159820149	159879418	R	<no descrition>
ENSCJAG00000018593	KNOWN_BY_PROJECTION	protein_coding	CD33	chromosome:C_jacchus3.2.1:22:1:49145316:1	42954354	42976636	D	CD33 molecule [Source:HGNC Symbol;Acc:HGNC:1659]
ENSCJAG00000004555	KNOWN_BY_PROJECTION	protein_coding	LRP8	chromosome:C_jacchus3.2.1:7:1:155834243:1	88480835	88560292	R	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor [Source:HGNC Symbol;Acc:HGNC:6700]
ENSCJAG00000011569	NOVEL	pseudogene	ENSCJAG00000011569	chromosome:C_jacchus3.2.1:4:1:171630274:1	159983206	159983424	D	<no descrition>
ENSCJAG00000011575	NOVEL	pseudogene	ENSCJAG00000011575	chromosome:C_jacchus3.2.1:4:1:171630274:1	159995033	159995622	R	<no descrition>
ENSCJAG00000011581	KNOWN_BY_PROJECTION	protein_coding	RSPH3	chromosome:C_jacchus3.2.1:4:1:171630274:1	160045184	160065686	R	radial spoke 3 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:HGNC:21054]
ENSCJAG00000011616	KNOWN_BY_PROJECTION	protein_coding	TAGAP	chromosome:C_jacchus3.2.1:4:1:171630274:1	160099971	160109774	R	T-cell activation RhoGTPase activating protein [Source:HGNC Symbol;Acc:HGNC:15669]
ENSCJAG00000018586	KNOWN_BY_PROJECTION	protein_coding	SIGLECL1	chromosome:C_jacchus3.2.1:22:1:49145316:1	42998894	43006643	D	SIGLEC family like 1 [Source:HGNC Symbol;Acc:HGNC:26856]
ENSCJAG00000011618	NOVEL	protein_coding	ENSCJAG00000011618	chromosome:C_jacchus3.2.1:4:1:171630274:1	160176881	160177274	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021333}  [Source:UniProtKB/TrEMBL;Acc:F6PK88]
ENSCJAG00000011622	KNOWN_BY_PROJECTION	protein_coding	FNDC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	160250707	160327304	D	fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
ENSCJAG00000008208	KNOWN	protein_coding	NUDCD3	chromosome:C_jacchus3.2.1:8:1:128169293:1	11887994	12028925	R	NudC domain-containing protein 3 {ECO:0000313|EMBL:JAB06861.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015156}  [Source:UniProtKB/TrEMBL;Acc:F7CW47]
ENSCJAG00000008211	NOVEL	protein_coding	ENSCJAG00000008211	chromosome:C_jacchus3.2.1:8:1:128169293:1	11930014	11938956	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015175}  [Source:UniProtKB/TrEMBL;Acc:F7HAP3]
ENSCJAG00000018562	KNOWN_BY_PROJECTION	protein_coding	IGLON5	chromosome:C_jacchus3.2.1:22:1:49145316:1	43054490	43076827	D	IgLON family member 5 [Source:HGNC Symbol;Acc:HGNC:34550]
ENSCJAG00000008220	NOVEL	pseudogene	ENSCJAG00000008220	chromosome:C_jacchus3.2.1:8:1:128169293:1	11967667	11968233	R	<no descrition>
ENSCJAG00000012353	NOVEL	pseudogene	ENSCJAG00000012353	chromosome:C_jacchus3.2.1:8:1:128169293:1	12041543	12041907	R	<no descrition>
ENSCJAG00000011655	NOVEL	protein_coding	ENSCJAG00000011655	chromosome:C_jacchus3.2.1:4:1:171630274:1	160544893	160550027	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021401}  [Source:UniProtKB/TrEMBL;Acc:F6S9G6]
ENSCJAG00000012318	KNOWN_BY_PROJECTION	protein_coding	NPC1L1	chromosome:C_jacchus3.2.1:8:1:128169293:1	12056182	12085744	R	NPC1-like 1 [Source:HGNC Symbol;Acc:HGNC:7898]
ENSCJAG00000018557	KNOWN_BY_PROJECTION	protein_coding	VSIG10L	chromosome:C_jacchus3.2.1:22:1:49145316:1	43078720	43086784	R	V-set and immunoglobulin domain containing 10 like [Source:HGNC Symbol;Acc:HGNC:27111]
ENSCJAG00000011657	NOVEL	pseudogene	ENSCJAG00000011657	chromosome:C_jacchus3.2.1:4:1:171630274:1	160729772	160730243	D	<no descrition>
ENSCJAG00000015186	KNOWN	protein_coding	MOSPD3	chromosome:C_jacchus3.2.1:2:1:204313951:1	11402192	11406578	R	Motile sperm domain-containing protein 3 isoform a {ECO:0000313|EMBL:JAB07581.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028011}  [Source:UniProtKB/TrEMBL;Acc:F6XID8]
ENSCJAG00000011664	KNOWN	protein_coding	SOD2	chromosome:C_jacchus3.2.1:4:1:171630274:1	160749598	160765000	R	Callithrix jacchus superoxide dismutase 2, mitochondrial (SOD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001267746]
ENSCJAG00000012233	KNOWN	protein_coding	DDX56	chromosome:C_jacchus3.2.1:8:1:128169293:1	12109258	12116945	R	Putative ATP-dependent RNA helicase DDX56 isoform 1 {ECO:0000313|EMBL:JAB12604.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022554}  [Source:UniProtKB/TrEMBL;Acc:F7IAV9]
ENSCJAG00000018541	KNOWN_BY_PROJECTION	protein_coding	ETFB	chromosome:C_jacchus3.2.1:22:1:49145316:1	43093235	43106079	R	electron-transfer-flavoprotein, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:3482]
ENSCJAG00000018540	KNOWN_BY_PROJECTION	protein_coding	CLDND2	chromosome:C_jacchus3.2.1:22:1:49145316:1	43107043	43108141	R	claudin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28511]
ENSCJAG00000018538	KNOWN_BY_PROJECTION	protein_coding	NKG7	chromosome:C_jacchus3.2.1:22:1:49145316:1	43111851	43112871	R	natural killer cell granule protein 7 [Source:HGNC Symbol;Acc:HGNC:7830]
ENSCJAG00000015201	KNOWN_BY_PROJECTION	protein_coding	PCOLCE	chromosome:C_jacchus3.2.1:2:1:204313951:1	11409154	11415904	R	procollagen C-endopeptidase enhancer [Source:HGNC Symbol;Acc:HGNC:8738]
ENSCJAG00000015238	KNOWN	protein_coding	LRCH4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11434842	11449720	D	Leucine-rich repeat and calponin homology domain-containing protein 4 {ECO:0000313|EMBL:JAB16793.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028127}  [Source:UniProtKB/TrEMBL;Acc:F7B955]
ENSCJAG00000017438	KNOWN_BY_PROJECTION	protein_coding	EML5	chromosome:C_jacchus3.2.1:10:1:132174527:1	114088309	114307248	R	echinoderm microtubule associated protein like 5 [Source:HGNC Symbol;Acc:HGNC:18197]
ENSCJAG00000015273	KNOWN_BY_PROJECTION	protein_coding	SAP25	chromosome:C_jacchus3.2.1:2:1:204313951:1	11451208	11452094	D	Sin3A-associated protein, 25kDa [Source:HGNC Symbol;Acc:HGNC:41908]
ENSCJAG00000015278	KNOWN	protein_coding	AGFG2	chromosome:C_jacchus3.2.1:2:1:204313951:1	11459067	11484123	R	Arf-GAP domain and FG repeat-containing protein 2 {ECO:0000313|EMBL:JAB07096.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028168}  [Source:UniProtKB/TrEMBL;Acc:F6ZPX7]
ENSCJAG00000012217	KNOWN	protein_coding	TMED4	chromosome:C_jacchus3.2.1:8:1:128169293:1	12120410	12124046	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022410}  [Source:UniProtKB/TrEMBL;Acc:F7HWS6]
ENSCJAG00000035746	NOVEL	protein_coding	ENSCJAG00000035746	chromosome:C_jacchus3.2.1:7:1:155834243:1	88665271	88666410	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008484}  [Source:UniProtKB/TrEMBL;Acc:F7I611]
ENSCJAG00000004682	KNOWN_BY_PROJECTION	protein_coding	DMRTB1	chromosome:C_jacchus3.2.1:7:1:155834243:1	88687109	88695538	D	DMRT-like family B with proline-rich C-terminal, 1 [Source:HGNC Symbol;Acc:HGNC:13913]
ENSCJAG00000018528	KNOWN_BY_PROJECTION	protein_coding	LIM2	chromosome:C_jacchus3.2.1:22:1:49145316:1	43119462	43129338	R	lens intrinsic membrane protein 2, 19kDa [Source:HGNC Symbol;Acc:HGNC:6610]
ENSCJAG00000004690	KNOWN_BY_PROJECTION	protein_coding	GLIS1	chromosome:C_jacchus3.2.1:7:1:155834243:1	88735274	88979855	R	GLIS family zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:29525]
ENSCJAG00000018511	NOVEL	protein_coding	ENSCJAG00000018511	chromosome:C_jacchus3.2.1:22:1:49145316:1	43142357	43258449	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048967}  [Source:UniProtKB/TrEMBL;Acc:F6PWY5]
ENSCJAG00000018508	KNOWN_BY_PROJECTION	protein_coding	CEACAM18	chromosome:C_jacchus3.2.1:22:1:49145316:1	43182943	43189357	D	carcinoembryonic antigen-related cell adhesion molecule 18 [Source:HGNC Symbol;Acc:HGNC:31949]
ENSCJAG00000018503	KNOWN_BY_PROJECTION	protein_coding	ZNF175	chromosome:C_jacchus3.2.1:22:1:49145316:1	43208039	43221809	D	zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
ENSCJAG00000032098	NOVEL	protein_coding	ENSCJAG00000032098	chromosome:C_jacchus3.2.1:22:1:49145316:1	43227327	43227647	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050241}  [Source:UniProtKB/TrEMBL;Acc:F7EZK0]
ENSCJAG00000018499	KNOWN_BY_PROJECTION	protein_coding	CTU1	chromosome:C_jacchus3.2.1:22:1:49145316:1	43227966	43230647	D	cytosolic thiouridylase subunit 1 [Source:HGNC Symbol;Acc:HGNC:29590]
ENSCJAG00000011722	KNOWN	protein_coding	WTAP	chromosome:C_jacchus3.2.1:4:1:171630274:1	160798270	160829887	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021609}  [Source:UniProtKB/TrEMBL;Acc:F6S779]
ENSCJAG00000002104	NOVEL	protein_coding	ENSCJAG00000002104	chromosome:C_jacchus3.2.1:22:1:49145316:1	43320964	43322003	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003784}  [Source:UniProtKB/TrEMBL;Acc:F7DT91]
ENSCJAG00000002103	NOVEL	protein_coding	ENSCJAG00000002103	chromosome:C_jacchus3.2.1:22:1:49145316:1	43332039	43333135	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003782}  [Source:UniProtKB/TrEMBL;Acc:F7DTC0]
ENSCJAG00000002102	NOVEL	pseudogene	ENSCJAG00000002102	chromosome:C_jacchus3.2.1:22:1:49145316:1	43374643	43375693	R	<no descrition>
ENSCJAG00000022458	KNOWN_BY_PROJECTION	protein_coding	FPR2	chromosome:C_jacchus3.2.1:22:1:49145316:1	43384354	43440837	D	formyl peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:3827]
ENSCJAG00000002084	KNOWN_BY_PROJECTION	protein_coding	ZNF577	chromosome:C_jacchus3.2.1:22:1:49145316:1	43452281	43461901	R	zinc finger protein 577 [Source:HGNC Symbol;Acc:HGNC:28673]
ENSCJAG00000011777	KNOWN_BY_PROJECTION	protein_coding	ACAT2	chromosome:C_jacchus3.2.1:4:1:171630274:1	160834242	160854769	D	acetyl-CoA acetyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:94]
ENSCJAG00000002071	KNOWN	protein_coding	ZNF613	chromosome:C_jacchus3.2.1:22:1:49145316:1	43483285	43486692	D	Callithrix jacchus zinc finger protein 613 (ZNF613), mRNA. [Source:RefSeq mRNA;Acc:NM_001270935]
ENSCJAG00000002069	NOVEL	protein_coding	ENSCJAG00000002069	chromosome:C_jacchus3.2.1:22:1:49145316:1	43505635	43543164	D	<no descrition>
ENSCJAG00000012021	KNOWN	protein_coding	OGDH	chromosome:C_jacchus3.2.1:8:1:128169293:1	12145298	12243612	D	2-oxoglutarate dehydrogenase, mitochondrial isoform 3 {ECO:0000313|EMBL:JAB11181.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022344}  [Source:UniProtKB/TrEMBL;Acc:F6Z9P1]
ENSCJAG00000002058	KNOWN_BY_PROJECTION	protein_coding	ZNF841	chromosome:C_jacchus3.2.1:22:1:49145316:1	43514660	43582621	D	zinc finger protein 841 [Source:HGNC Symbol;Acc:HGNC:27611]
ENSCJAG00000011589	NOVEL	protein_coding	ENSCJAG00000011589	chromosome:C_jacchus3.2.1:22:1:49145316:1	43516579	43517397	R	40S ribosomal protein S24 {ECO:0000256|RuleBase:RU004383}  [Source:UniProtKB/TrEMBL;Acc:F6QSH8]
ENSCJAG00000011792	KNOWN	protein_coding	TCP1	chromosome:C_jacchus3.2.1:4:1:171630274:1	160854224	160864780	R	T-complex protein 1 subunit alpha {ECO:0000256|RuleBase:RU004191}  [Source:UniProtKB/TrEMBL;Acc:F6TE24]
ENSCJAG00000036513	KNOWN	protein_coding	ZNF614	chromosome:C_jacchus3.2.1:22:1:49145316:1	43615440	43650612	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003710}; Zinc finger protein 614 {ECO:0000313|EMBL:JAB39687.1}  [Source:UniProtKB/TrEMBL;Acc:F7EZZ8]
ENSCJAG00000002045	KNOWN_BY_PROJECTION	protein_coding	ZNF615	chromosome:C_jacchus3.2.1:22:1:49145316:1	43638027	43670860	D	zinc finger protein 615 [Source:HGNC Symbol;Acc:HGNC:24740]
ENSCJAG00000001926	NOVEL	protein_coding	ENSCJAG00000001926	chromosome:C_jacchus3.2.1:22:1:49145316:1	43666097	43915092	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016596}  [Source:UniProtKB/TrEMBL;Acc:F6ZLV8]
ENSCJAG00000015307	KNOWN_BY_PROJECTION	protein_coding	NYAP1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11530388	11539809	R	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 [Source:HGNC Symbol;Acc:HGNC:22009]
ENSCJAG00000015328	KNOWN_BY_PROJECTION	protein_coding	TSC22D4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11547730	11561392	D	TSC22 domain family, member 4 [Source:HGNC Symbol;Acc:HGNC:21696]
ENSCJAG00000021920	NOVEL	pseudogene	ENSCJAG00000021920	chromosome:C_jacchus3.2.1:10:1:132174527:1	114138644	114139064	D	<no descrition>
ENSCJAG00000017543	KNOWN_BY_PROJECTION	protein_coding	TTC8	chromosome:C_jacchus3.2.1:10:1:132174527:1	114338891	114399342	D	tetratricopeptide repeat domain 8 [Source:HGNC Symbol;Acc:HGNC:20087]
ENSCJAG00000033751	KNOWN_BY_PROJECTION	protein_coding	PDCD7	chromosome:C_jacchus3.2.1:22:1:49145316:1	43698779	43700117	D	programmed cell death 7 [Source:HGNC Symbol;Acc:HGNC:8767]
ENSCJAG00000002036	KNOWN_BY_PROJECTION	protein_coding	ZNF836	chromosome:C_jacchus3.2.1:22:1:49145316:1	43716544	43726435	R	zinc finger protein 836 [Source:HGNC Symbol;Acc:HGNC:34333]
ENSCJAG00000004707	KNOWN	protein_coding	TMEM48	chromosome:C_jacchus3.2.1:7:1:155834243:1	89013843	89081694	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008763}  [Source:UniProtKB/TrEMBL;Acc:F7HM90]
ENSCJAG00000002034	NOVEL	protein_coding	ENSCJAG00000002034	chromosome:C_jacchus3.2.1:22:1:49145316:1	43740992	43741370	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003662}  [Source:UniProtKB/TrEMBL;Acc:F7GZK0]
ENSCJAG00000011859	KNOWN	protein_coding	MRPL18	chromosome:C_jacchus3.2.1:4:1:171630274:1	160865792	160872473	D	39S ribosomal protein L18, mitochondrial {ECO:0000313|EMBL:JAB07814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021772}  [Source:UniProtKB/TrEMBL;Acc:F6T3Q3]
ENSCJAG00000001967	KNOWN	protein_coding	PPP2R1A	chromosome:C_jacchus3.2.1:22:1:49145316:1	43753755	43789800	D	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform {ECO:0000313|EMBL:JAB09663.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003657}  [Source:UniProtKB/TrEMBL;Acc:F7H4K0]
ENSCJAG00000011984	KNOWN_BY_PROJECTION	protein_coding	ZMIZ2	chromosome:C_jacchus3.2.1:8:1:128169293:1	12296091	12307369	D	zinc finger, MIZ-type containing 2 [Source:HGNC Symbol;Acc:HGNC:22229]
ENSCJAG00000011969	KNOWN	protein_coding	ENSCJAG00000011969	chromosome:C_jacchus3.2.1:8:1:128169293:1	12335194	12339540	D	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F6SQW1]
ENSCJAG00000017618	NOVEL	pseudogene	ENSCJAG00000017618	chromosome:C_jacchus3.2.1:10:1:132174527:1	114417964	114418735	R	<no descrition>
ENSCJAG00000032164	NOVEL	pseudogene	ENSCJAG00000032164	chromosome:C_jacchus3.2.1:10:1:132174527:1	114642669	114643492	R	<no descrition>
ENSCJAG00000011953	KNOWN	protein_coding	H2AFV	chromosome:C_jacchus3.2.1:8:1:128169293:1	12373531	12388905	R	Histone H2A {ECO:0000256|RuleBase:RU000527}  [Source:UniProtKB/TrEMBL;Acc:F6TD86]
ENSCJAG00000011865	KNOWN_BY_PROJECTION	protein_coding	PNLDC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	160874331	160895075	D	poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21185]
ENSCJAG00000011946	KNOWN_BY_PROJECTION	protein_coding	PURB	chromosome:C_jacchus3.2.1:8:1:128169293:1	12423242	12424421	R	purine-rich element binding protein B [Source:HGNC Symbol;Acc:HGNC:9702]
ENSCJAG00000017620	KNOWN	protein_coding	FOXN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	114696849	114964286	R	Forkhead box protein N3 isoform 1 {ECO:0000313|EMBL:JAB30864.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032467}  [Source:UniProtKB/TrEMBL;Acc:F7HH72]
ENSCJAG00000011889	KNOWN_BY_PROJECTION	protein_coding	MYO1G	chromosome:C_jacchus3.2.1:8:1:128169293:1	12499757	12519248	R	myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
ENSCJAG00000017635	NOVEL	protein_coding	ENSCJAG00000017635	chromosome:C_jacchus3.2.1:10:1:132174527:1	114830471	114832737	R	Adenylyl cyclase-associated protein {ECO:0000256|RuleBase:RU000647}  [Source:UniProtKB/TrEMBL;Acc:F6UAM8]
ENSCJAG00000017647	NOVEL	protein_coding	ENSCJAG00000017647	chromosome:C_jacchus3.2.1:10:1:132174527:1	115395707	115396283	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032506}  [Source:UniProtKB/TrEMBL;Acc:F7H1D4]
ENSCJAG00000017645	KNOWN	protein_coding	EFCAB11	chromosome:C_jacchus3.2.1:10:1:132174527:1	115508667	115513198	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032503}  [Source:UniProtKB/TrEMBL;Acc:F7H1E6]
ENSCJAG00000017649	KNOWN	protein_coding	TDP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	115515066	115598590	D	Tyrosyl-DNA phosphodiesterase 1 {ECO:0000313|EMBL:JAB07513.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032573}  [Source:UniProtKB/TrEMBL;Acc:F7FWW5]
ENSCJAG00000015342	KNOWN_BY_PROJECTION	protein_coding	C7orf61	chromosome:C_jacchus3.2.1:2:1:204313951:1	11564352	11575014	D	chromosome 7 open reading frame 61 [Source:HGNC Symbol;Acc:HGNC:22135]
ENSCJAG00000015345	KNOWN	protein_coding	PPP1R35	chromosome:C_jacchus3.2.1:2:1:204313951:1	11597934	11599109	D	Protein phosphatase 1 regulatory subunit 35 {ECO:0000313|EMBL:JAB34139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028253}  [Source:UniProtKB/TrEMBL;Acc:F6VQG4]
ENSCJAG00000015348	KNOWN_BY_PROJECTION	protein_coding	MEPCE	chromosome:C_jacchus3.2.1:2:1:204313951:1	11600707	11605998	R	methylphosphate capping enzyme [Source:HGNC Symbol;Acc:HGNC:20247]
ENSCJAG00000011893	NOVEL	pseudogene	ENSCJAG00000011893	chromosome:C_jacchus3.2.1:4:1:171630274:1	160998538	160999123	D	<no descrition>
ENSCJAG00000011902	NOVEL	pseudogene	ENSCJAG00000011902	chromosome:C_jacchus3.2.1:4:1:171630274:1	161013267	161014244	D	<no descrition>
ENSCJAG00000015363	KNOWN_BY_PROJECTION	protein_coding	ZCWPW1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11605823	11632769	D	zinc finger, CW type with PWWP domain 1 [Source:HGNC Symbol;Acc:HGNC:23486]
ENSCJAG00000011908	KNOWN_BY_PROJECTION	protein_coding	IGF2R	chromosome:C_jacchus3.2.1:4:1:171630274:1	161083634	161207979	D	insulin-like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]
ENSCJAG00000011887	NOVEL	pseudogene	ENSCJAG00000011887	chromosome:C_jacchus3.2.1:8:1:128169293:1	12524923	12525214	R	<no descrition>
ENSCJAG00000001947	KNOWN_BY_PROJECTION	protein_coding	ZNF480	chromosome:C_jacchus3.2.1:22:1:49145316:1	43822099	43837929	D	zinc finger protein 480 [Source:HGNC Symbol;Acc:HGNC:23305]
ENSCJAG00000011851	KNOWN_BY_PROJECTION	protein_coding	CCM2	chromosome:C_jacchus3.2.1:8:1:128169293:1	12540549	12620592	D	cerebral cavernous malformation 2 [Source:HGNC Symbol;Acc:HGNC:21708]
ENSCJAG00000018185	KNOWN_BY_PROJECTION	protein_coding	ZNF845	chromosome:C_jacchus3.2.1:22:1:49145316:1	43953308	44456788	R	zinc finger protein 845 [Source:HGNC Symbol;Acc:HGNC:25112]
ENSCJAG00000015373	NOVEL	protein_coding	ENSCJAG00000015373	chromosome:C_jacchus3.2.1:2:1:204313951:1	11633750	11657931	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028324}  [Source:UniProtKB/TrEMBL;Acc:F7B7X9]
ENSCJAG00000015383	KNOWN_BY_PROJECTION	protein_coding	PVRIG	chromosome:C_jacchus3.2.1:2:1:204313951:1	11666080	11840222	R	poliovirus receptor related immunoglobulin domain containing [Source:HGNC Symbol;Acc:HGNC:32190]
ENSCJAG00000011833	KNOWN_BY_PROJECTION	protein_coding	NACAD	chromosome:C_jacchus3.2.1:8:1:128169293:1	12622693	12631201	R	NAC alpha domain containing [Source:HGNC Symbol;Acc:HGNC:22196]
ENSCJAG00000017694	KNOWN_BY_PROJECTION	protein_coding	KCNK13	chromosome:C_jacchus3.2.1:10:1:132174527:1	115621782	115737706	D	potassium channel, two pore domain subfamily K, member 13 [Source:HGNC Symbol;Acc:HGNC:6275]
ENSCJAG00000017701	KNOWN	protein_coding	PSMC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	115799591	115813801	D	26S protease regulatory subunit 4 {ECO:0000313|EMBL:JAB02103.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032638}  [Source:UniProtKB/TrEMBL;Acc:F7DZ95]
ENSCJAG00000018238	KNOWN_BY_PROJECTION	protein_coding	ZNF347	chromosome:C_jacchus3.2.1:22:1:49145316:1	44403906	44476581	R	zinc finger protein 347 [Source:HGNC Symbol;Acc:HGNC:16447]
ENSCJAG00000012008	KNOWN_BY_PROJECTION	protein_coding	SLC22A1	chromosome:C_jacchus3.2.1:4:1:171630274:1	161222572	161260592	D	solute carrier family 22 (organic cation transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10963]
ENSCJAG00000018251	NOVEL	protein_coding	ENSCJAG00000018251	chromosome:C_jacchus3.2.1:22:1:49145316:1	44504991	44523404	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044888}  [Source:UniProtKB/TrEMBL;Acc:F7HGC1]
ENSCJAG00000015392	KNOWN_BY_PROJECTION	protein_coding	STAG3	chromosome:C_jacchus3.2.1:2:1:204313951:1	11678266	11718088	R	stromal antigen 3 [Source:HGNC Symbol;Acc:HGNC:11356]
ENSCJAG00000017711	KNOWN_BY_PROJECTION	protein_coding	NRDE2	chromosome:C_jacchus3.2.1:10:1:132174527:1	115817851	115866758	R	NRDE-2, necessary for RNA interference, domain containing [Source:HGNC Symbol;Acc:HGNC:20186]
ENSCJAG00000018304	NOVEL	pseudogene	ENSCJAG00000018304	chromosome:C_jacchus3.2.1:22:1:49145316:1	44564119	44565154	R	<no descrition>
ENSCJAG00000018312	NOVEL	protein_coding	ENSCJAG00000018312	chromosome:C_jacchus3.2.1:22:1:49145316:1	44579602	44581718	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033893}  [Source:UniProtKB/TrEMBL;Acc:F6Q0I5]
ENSCJAG00000033666	NOVEL	protein_coding	ENSCJAG00000033666	chromosome:C_jacchus3.2.1:22:1:49145316:1	44591335	44592670	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033892}  [Source:UniProtKB/TrEMBL;Acc:F6Q0J6]
ENSCJAG00000018313	KNOWN_BY_PROJECTION	protein_coding	VN1R2	chromosome:C_jacchus3.2.1:22:1:49145316:1	44639846	44640650	D	vomeronasal 1 receptor 2 [Source:HGNC Symbol;Acc:HGNC:19872]
ENSCJAG00000018316	NOVEL	protein_coding	ENSCJAG00000018316	chromosome:C_jacchus3.2.1:22:1:49145316:1	44640676	44641312	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033899}  [Source:UniProtKB/TrEMBL;Acc:F6Q0E4]
ENSCJAG00000021880	NOVEL	pseudogene	ENSCJAG00000021880	chromosome:C_jacchus3.2.1:22:1:49145316:1	44652099	44652821	D	<no descrition>
ENSCJAG00000018318	KNOWN_BY_PROJECTION	protein_coding	VN1R4	chromosome:C_jacchus3.2.1:22:1:49145316:1	44669561	44671721	D	vomeronasal 1 receptor 4 [Source:HGNC Symbol;Acc:HGNC:19871]
ENSCJAG00000018320	KNOWN	protein_coding	ZNF331	chromosome:C_jacchus3.2.1:22:1:49145316:1	44714242	44750252	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006358}; Zinc finger protein 331 {ECO:0000313|EMBL:JAB06351.1}  [Source:UniProtKB/TrEMBL;Acc:F7ED14]
ENSCJAG00000018329	NOVEL	protein_coding	ENSCJAG00000018329	chromosome:C_jacchus3.2.1:22:1:49145316:1	44765078	44780885	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033948}  [Source:UniProtKB/TrEMBL;Acc:F6TCE9]
ENSCJAG00000018344	NOVEL	protein_coding	ENSCJAG00000018344	chromosome:C_jacchus3.2.1:22:1:49145316:1	44897550	44898363	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033954}  [Source:UniProtKB/TrEMBL;Acc:F6T2A2]
ENSCJAG00000012056	KNOWN_BY_PROJECTION	protein_coding	SLC22A2	chromosome:C_jacchus3.2.1:4:1:171630274:1	161301562	161330989	R	solute carrier family 22 (organic cation transporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10966]
ENSCJAG00000011804	KNOWN_BY_PROJECTION	protein_coding	TBRG4	chromosome:C_jacchus3.2.1:8:1:128169293:1	12643262	12656611	R	transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
ENSCJAG00000018345	KNOWN_BY_PROJECTION	protein_coding	NLRP12	chromosome:C_jacchus3.2.1:22:1:49145316:1	45047957	45076318	R	NLR family, pyrin domain containing 12 [Source:HGNC Symbol;Acc:HGNC:22938]
ENSCJAG00000011793	KNOWN_BY_PROJECTION	protein_coding	RAMP3	chromosome:C_jacchus3.2.1:8:1:128169293:1	12644890	12727216	D	receptor (G protein-coupled) activity modifying protein 3 [Source:HGNC Symbol;Acc:HGNC:9845]
ENSCJAG00000034171	NOVEL	protein_coding	ENSCJAG00000034171	chromosome:C_jacchus3.2.1:8:1:128169293:1	12665929	12667682	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049964}  [Source:UniProtKB/TrEMBL;Acc:F7BVF9]
ENSCJAG00000012093	KNOWN_BY_PROJECTION	protein_coding	SLC22A3	chromosome:C_jacchus3.2.1:4:1:171630274:1	161430784	161553453	D	solute carrier family 22 (organic cation transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:10967]
ENSCJAG00000011790	NOVEL	protein_coding	ENSCJAG00000011790	chromosome:C_jacchus3.2.1:8:1:128169293:1	12935429	12935816	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021633}  [Source:UniProtKB/TrEMBL;Acc:F6RL75]
ENSCJAG00000011201	KNOWN_BY_PROJECTION	protein_coding	ADCY1	chromosome:C_jacchus3.2.1:8:1:128169293:1	13164656	13264925	D	adenylate cyclase 1 (brain) [Source:HGNC Symbol;Acc:HGNC:232]
ENSCJAG00000017740	KNOWN	protein_coding	CALM3	chromosome:C_jacchus3.2.1:10:1:132174527:1	115957010	115968558	D	Calmodulin {ECO:0000313|EMBL:JAB11751.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032742}  [Source:UniProtKB/TrEMBL;Acc:F7GQQ2]
ENSCJAG00000011223	KNOWN_BY_PROJECTION	protein_coding	IGFBP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	13292438	13296717	D	insulin-like growth factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5469]
ENSCJAG00000012132	KNOWN_BY_PROJECTION	protein_coding	PLG	chromosome:C_jacchus3.2.1:4:1:171630274:1	161589507	161632102	D	plasminogen [Source:HGNC Symbol;Acc:HGNC:9071]
ENSCJAG00000036153	NOVEL	protein_coding	ENSCJAG00000036153	chromosome:C_jacchus3.2.1:22:1:49145316:1	45052096	45052678	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052257}  [Source:UniProtKB/TrEMBL;Acc:F7IJ47]
ENSCJAG00000018390	KNOWN	protein_coding	MYADM	chromosome:C_jacchus3.2.1:22:1:49145316:1	45120115	45127679	D	Myeloid-associated differentiation marker {ECO:0000313|EMBL:JAB14071.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034057}  [Source:UniProtKB/TrEMBL;Acc:F6ZUF5]
ENSCJAG00000017767	KNOWN	protein_coding	TTC7B	chromosome:C_jacchus3.2.1:10:1:132174527:1	116092250	116335858	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032818}  [Source:UniProtKB/TrEMBL;Acc:F7EQH4]
ENSCJAG00000011230	KNOWN_BY_PROJECTION	protein_coding	IGFBP3	chromosome:C_jacchus3.2.1:8:1:128169293:1	13307574	13316730	R	insulin-like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]
ENSCJAG00000018393	KNOWN	protein_coding	PRKCG	chromosome:C_jacchus3.2.1:22:1:49145316:1	45133229	45160325	D	Protein kinase C {ECO:0000256|PIRNR:PIRNR000550}  [Source:UniProtKB/TrEMBL;Acc:F7CPU6]
ENSCJAG00000017801	KNOWN_BY_PROJECTION	protein_coding	RPS6KA5	chromosome:C_jacchus3.2.1:10:1:132174527:1	116416223	116617442	R	ribosomal protein S6 kinase, 90kDa, polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:10434]
ENSCJAG00000004828	KNOWN	protein_coding	YIPF1	chromosome:C_jacchus3.2.1:7:1:155834243:1	89089415	89133534	R	Protein YIPF1 {ECO:0000313|EMBL:JAB02490.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008855}  [Source:UniProtKB/TrEMBL;Acc:F7IHH0]
ENSCJAG00000012169	NOVEL	pseudogene	ENSCJAG00000012169	chromosome:C_jacchus3.2.1:4:1:171630274:1	161751978	161753954	R	<no descrition>
ENSCJAG00000004861	KNOWN_BY_PROJECTION	protein_coding	DIO1	chromosome:C_jacchus3.2.1:7:1:155834243:1	89137857	89156909	D	deiodinase, iodothyronine, type I [Source:HGNC Symbol;Acc:HGNC:2883]
ENSCJAG00000012176	KNOWN_BY_PROJECTION	protein_coding	MAP3K4	chromosome:C_jacchus3.2.1:4:1:171630274:1	161753357	161884733	D	mitogen-activated protein kinase kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6856]
ENSCJAG00000004866	KNOWN	protein_coding	HSPB11	chromosome:C_jacchus3.2.1:7:1:155834243:1	89165108	89192562	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008877}  [Source:UniProtKB/TrEMBL;Acc:F7IF79]
ENSCJAG00000011245	NOVEL	pseudogene	ENSCJAG00000011245	chromosome:C_jacchus3.2.1:8:1:128169293:1	13357519	13358088	R	<no descrition>
ENSCJAG00000018478	KNOWN_BY_PROJECTION	protein_coding	CACNG7	chromosome:C_jacchus3.2.1:22:1:49145316:1	45165207	45194941	D	calcium channel, voltage-dependent, gamma subunit 7 [Source:HGNC Symbol;Acc:HGNC:13626]
ENSCJAG00000035121	KNOWN_BY_PROJECTION	protein_coding	TTC4	chromosome:C_jacchus3.2.1:8:1:128169293:1	13361648	13362750	R	tetratricopeptide repeat domain 4 [Source:HGNC Symbol;Acc:HGNC:12394]
ENSCJAG00000004858	KNOWN	protein_coding	ENSCJAG00000004858	chromosome:C_jacchus3.2.1:7:1:155834243:1	89179511	89183157	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008859}  [Source:UniProtKB/TrEMBL;Acc:F7IHG8]
ENSCJAG00000004868	KNOWN	protein_coding	LRRC42	chromosome:C_jacchus3.2.1:7:1:155834243:1	89192814	89214120	D	Leucine-rich repeat-containing protein 42 {ECO:0000313|EMBL:JAB03507.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008898}  [Source:UniProtKB/TrEMBL;Acc:F7IF62]
ENSCJAG00000012323	KNOWN	protein_coding	AGPAT4	chromosome:C_jacchus3.2.1:4:1:171630274:1	161903029	162030040	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022613}  [Source:UniProtKB/TrEMBL;Acc:F7HWR4]
ENSCJAG00000018484	KNOWN_BY_PROJECTION	protein_coding	CACNG8	chromosome:C_jacchus3.2.1:22:1:49145316:1	45215293	45237936	D	calcium channel, voltage-dependent, gamma subunit 8 [Source:HGNC Symbol;Acc:HGNC:13628]
ENSCJAG00000018488	NOVEL	protein_coding	CACNG6	chromosome:C_jacchus3.2.1:22:1:49145316:1	45247307	45275780	D	Voltage-dependent calcium channel gamma subunit {ECO:0000256|RuleBase:RU361151}  [Source:UniProtKB/TrEMBL;Acc:B0VXH9]
ENSCJAG00000014752	KNOWN	protein_coding	TNS3	chromosome:C_jacchus3.2.1:8:1:128169293:1	14337478	14669724	R	Tensin-3 {ECO:0000313|EMBL:JAB22043.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027197}  [Source:UniProtKB/TrEMBL;Acc:F7H032]
ENSCJAG00000017837	KNOWN_BY_PROJECTION	protein_coding	C14orf159	chromosome:C_jacchus3.2.1:10:1:132174527:1	116675085	116782718	D	chromosome 14 open reading frame 159 [Source:HGNC Symbol;Acc:HGNC:20498]
ENSCJAG00000010697	NOVEL	protein_coding	ENSCJAG00000010697	chromosome:C_jacchus3.2.1:7:1:155834243:1	89250481	89256244	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019715}  [Source:UniProtKB/TrEMBL;Acc:F6XKJ8]
ENSCJAG00000004890	KNOWN_BY_PROJECTION	protein_coding	LDLRAD1	chromosome:C_jacchus3.2.1:7:1:155834243:1	89276507	89286396	R	low density lipoprotein receptor class A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32069]
ENSCJAG00000004912	KNOWN	protein_coding	TMEM59	chromosome:C_jacchus3.2.1:7:1:155834243:1	89298748	89324693	R	Transmembrane protein 59 {ECO:0000313|EMBL:JAB11724.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009082}  [Source:UniProtKB/TrEMBL;Acc:F7I1M7]
ENSCJAG00000018494	KNOWN_BY_PROJECTION	protein_coding	VSTM1	chromosome:C_jacchus3.2.1:22:1:49145316:1	45299281	45324951	R	V-set and transmembrane domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29455]
ENSCJAG00000018505	KNOWN_BY_PROJECTION	protein_coding	OSCAR	chromosome:C_jacchus3.2.1:22:1:49145316:1	45336766	45345205	R	osteoclast associated, immunoglobulin-like receptor [Source:HGNC Symbol;Acc:HGNC:29960]
ENSCJAG00000014743	KNOWN_BY_PROJECTION	protein_coding	PKD1L1	chromosome:C_jacchus3.2.1:8:1:128169293:1	14913133	14938180	R	polycystic kidney disease 1 like 1 [Source:HGNC Symbol;Acc:HGNC:18053]
ENSCJAG00000018518	NOVEL	protein_coding	ENSCJAG00000018518	chromosome:C_jacchus3.2.1:22:1:49145316:1	45346931	45351501	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034351}  [Source:UniProtKB/TrEMBL;Acc:F6XMD2]
ENSCJAG00000014746	NOVEL	protein_coding	ENSCJAG00000014746	chromosome:C_jacchus3.2.1:8:1:128169293:1	14923738	14925328	D	<no descrition>
ENSCJAG00000018519	KNOWN_BY_PROJECTION	protein_coding	TFPT	chromosome:C_jacchus3.2.1:22:1:49145316:1	45351254	45362147	R	TCF3 (E2A) fusion partner (in childhood Leukemia) [Source:HGNC Symbol;Acc:HGNC:13630]
ENSCJAG00000018525	KNOWN_BY_PROJECTION	protein_coding	PRPF31	chromosome:C_jacchus3.2.1:22:1:49145316:1	45366569	45382715	D	pre-mRNA processing factor 31 [Source:HGNC Symbol;Acc:HGNC:15446]
ENSCJAG00000014735	KNOWN	protein_coding	HUS1	chromosome:C_jacchus3.2.1:8:1:128169293:1	15070943	15086164	R	Checkpoint protein HUS1 {ECO:0000313|EMBL:JAB01625.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050341}  [Source:UniProtKB/TrEMBL;Acc:F7G3C8]
ENSCJAG00000001094	NOVEL	protein_coding	MA_M007_JSM4E6A6F	chromosome:C_jacchus3.2.1:22:1:49145316:1	45396002	45409784	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042495}  [Source:UniProtKB/TrEMBL;Acc:F6Z6Q5]
ENSCJAG00000004976	KNOWN	protein_coding	TCEANC2	chromosome:C_jacchus3.2.1:7:1:155834243:1	89324857	89375479	D	Transcription elongation factor A N-terminal and central domain-containing protein 2 {ECO:0000313|EMBL:JAB10801.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009101}  [Source:UniProtKB/TrEMBL;Acc:F7HUC9]
ENSCJAG00000035233	NOVEL	protein_coding	ENSCJAG00000035233	chromosome:C_jacchus3.2.1:4:1:171630274:1	162090467	162377848	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022631}  [Source:UniProtKB/TrEMBL;Acc:F7HTY7]
ENSCJAG00000004989	KNOWN_BY_PROJECTION	protein_coding	CDCP2	chromosome:C_jacchus3.2.1:7:1:155834243:1	89415675	89431102	R	CUB domain containing protein 2 [Source:HGNC Symbol;Acc:HGNC:27297]
ENSCJAG00000012355	NOVEL	protein_coding	ENSCJAG00000012355	chromosome:C_jacchus3.2.1:4:1:171630274:1	162603435	163316026	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022625}  [Source:UniProtKB/TrEMBL;Acc:F7HWP0]
ENSCJAG00000005015	KNOWN	protein_coding	CYB5RL	chromosome:C_jacchus3.2.1:7:1:155834243:1	89452126	89475131	R	NADH-cytochrome b5 reductase-like {ECO:0000313|EMBL:JAB04114.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009144}  [Source:UniProtKB/TrEMBL;Acc:F7IQ93]
ENSCJAG00000012365	KNOWN	protein_coding	PACRG	chromosome:C_jacchus3.2.1:4:1:171630274:1	163608126	163708502	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022638}  [Source:UniProtKB/TrEMBL;Acc:F7HTW9]
ENSCJAG00000012367	NOVEL	pseudogene	ENSCJAG00000012367	chromosome:C_jacchus3.2.1:4:1:171630274:1	164051307	164051532	R	<no descrition>
ENSCJAG00000012368	KNOWN_BY_PROJECTION	protein_coding	QKI	chromosome:C_jacchus3.2.1:4:1:171630274:1	164347741	164469078	D	QKI, KH domain containing, RNA binding [Source:HGNC Symbol;Acc:HGNC:21100]
ENSCJAG00000012391	NOVEL	protein_coding	ENSCJAG00000012391	chromosome:C_jacchus3.2.1:4:1:171630274:1	166169025	166315774	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022703}  [Source:UniProtKB/TrEMBL;Acc:F7IHT8]
ENSCJAG00000014725	KNOWN_BY_PROJECTION	protein_coding	SUN3	chromosome:C_jacchus3.2.1:8:1:128169293:1	15093715	15138927	R	Sad1 and UNC84 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:22429]
ENSCJAG00000001106	KNOWN_BY_PROJECTION	protein_coding	LENG1	chromosome:C_jacchus3.2.1:22:1:49145316:1	45409826	45413556	R	leukocyte receptor cluster (LRC) member 1 [Source:HGNC Symbol;Acc:HGNC:15502]
ENSCJAG00000015439	KNOWN_BY_PROJECTION	protein_coding	GPC2	chromosome:C_jacchus3.2.1:2:1:204313951:1	11718446	11726819	D	glypican 2 [Source:HGNC Symbol;Acc:HGNC:4450]
ENSCJAG00000012410	NOVEL	protein_coding	ENSCJAG00000012410	chromosome:C_jacchus3.2.1:4:1:171630274:1	166356794	166725866	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022881}  [Source:UniProtKB/TrEMBL;Acc:F7IPQ1]
ENSCJAG00000005018	KNOWN_BY_PROJECTION	protein_coding	MRPL37	chromosome:C_jacchus3.2.1:7:1:155834243:1	89482625	89501922	D	mitochondrial ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:14034]
ENSCJAG00000014701	KNOWN_BY_PROJECTION	protein_coding	C7orf57	chromosome:C_jacchus3.2.1:8:1:128169293:1	15144547	15174547	D	chromosome 7 open reading frame 57 [Source:HGNC Symbol;Acc:HGNC:22247]
ENSCJAG00000001108	KNOWN_BY_PROJECTION	protein_coding	TMC4	chromosome:C_jacchus3.2.1:22:1:49145316:1	45414018	45430588	R	transmembrane channel-like 4 [Source:HGNC Symbol;Acc:HGNC:22998]
ENSCJAG00000001123	KNOWN	protein_coding	MBOAT7	chromosome:C_jacchus3.2.1:22:1:49145316:1	45431137	45450254	R	Lysophospholipid acyltransferase 7 isoform 1 {ECO:0000313|EMBL:JAB06186.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001935}  [Source:UniProtKB/TrEMBL;Acc:F6XQJ1]
ENSCJAG00000014682	KNOWN	protein_coding	UPP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	15192195	15219220	D	Uridine phosphorylase {ECO:0000256|RuleBase:RU361131}  [Source:UniProtKB/TrEMBL;Acc:F7FUA4]
ENSCJAG00000001128	KNOWN	protein_coding	TSEN34	chromosome:C_jacchus3.2.1:22:1:49145316:1	45450628	45454650	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001939}; tRNA splicing endonuclease 34 homolog, isoform 1 (Predicted) {ECO:0000313|EMBL:ABZ80227.1}; tRNA-splicing endonuclease subunit Sen34 {ECO:0000313|EMBL:JAB26691.1}  [Source:UniProtKB/TrEMBL;Acc:B0VXI7]
ENSCJAG00000015480	KNOWN_BY_PROJECTION	protein_coding	GAL3ST4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11729278	11738338	D	galactose-3-O-sulfotransferase 4 [Source:HGNC Symbol;Acc:HGNC:24145]
ENSCJAG00000032709	NOVEL	protein_coding	ENSCJAG00000032709	chromosome:C_jacchus3.2.1:8:1:128169293:1	15230102	15231729	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042250}  [Source:UniProtKB/TrEMBL;Acc:F7AR33]
ENSCJAG00000001130	NOVEL	protein_coding	RPS9	chromosome:C_jacchus3.2.1:22:1:49145316:1	45461812	45466043	D	Ribosomal protein S9 (Predicted) {ECO:0000313|EMBL:ABZ80228.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001945}  [Source:UniProtKB/TrEMBL;Acc:B0VXI8]
ENSCJAG00000021923	KNOWN_BY_PROJECTION	protein_coding	GPR68	chromosome:C_jacchus3.2.1:10:1:132174527:1	116790991	116800386	R	G protein-coupled receptor 68 [Source:HGNC Symbol;Acc:HGNC:4519]
ENSCJAG00000017878	KNOWN_BY_PROJECTION	protein_coding	CCDC88C	chromosome:C_jacchus3.2.1:10:1:132174527:1	116828092	116981977	R	coiled-coil domain containing 88C [Source:HGNC Symbol;Acc:HGNC:19967]
ENSCJAG00000000920	KNOWN_BY_PROJECTION	protein_coding	ABCA13	chromosome:C_jacchus3.2.1:8:1:128169293:1	15252953	15712418	D	ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
ENSCJAG00000001139	NOVEL	protein_coding	ENSCJAG00000001139	chromosome:C_jacchus3.2.1:22:1:49145316:1	45476968	45490085	R	<no descrition>
ENSCJAG00000017905	KNOWN	protein_coding	SMEK1	chromosome:C_jacchus3.2.1:10:1:132174527:1	117016621	117069691	R	Serine/threonine-protein phosphatase 4 regulatory subunit 3A {ECO:0000313|EMBL:JAB10964.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033108}  [Source:UniProtKB/TrEMBL;Acc:F6SXR3]
ENSCJAG00000005029	KNOWN	protein_coding	SSBP3	chromosome:C_jacchus3.2.1:7:1:155834243:1	89507561	89685287	R	Single-stranded DNA-binding protein 3 isoform c {ECO:0000313|EMBL:JAB09050.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050762}  [Source:UniProtKB/TrEMBL;Acc:F7HIR6]
ENSCJAG00000000940	KNOWN	protein_coding	VWC2	chromosome:C_jacchus3.2.1:8:1:128169293:1	16776858	16906052	D	Brorin {ECO:0000313|EMBL:JAB04952.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049423}  [Source:UniProtKB/TrEMBL;Acc:F7CDJ2]
ENSCJAG00000000949	KNOWN_BY_PROJECTION	protein_coding	ZPBP	chromosome:C_jacchus3.2.1:8:1:128169293:1	16936751	17061650	R	zona pellucida binding protein [Source:HGNC Symbol;Acc:HGNC:15662]
ENSCJAG00000000951	KNOWN_BY_PROJECTION	protein_coding	C7orf72	chromosome:C_jacchus3.2.1:8:1:128169293:1	17064442	17126826	D	chromosome 7 open reading frame 72 [Source:HGNC Symbol;Acc:HGNC:22564]
ENSCJAG00000015483	KNOWN	protein_coding	C7ORF43	chromosome:C_jacchus3.2.1:2:1:204313951:1	11740616	11744157	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028526}  [Source:UniProtKB/TrEMBL;Acc:F7B6H3]
ENSCJAG00000001166	NOVEL	protein_coding	LILRB1_1	chromosome:C_jacchus3.2.1:22:1:49145316:1	45512628	45565557	R	LILRBa (Predicted) {ECO:0000313|EMBL:ABZ80230.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002743}  [Source:UniProtKB/TrEMBL;Acc:B0VXJ0]
ENSCJAG00000010988	KNOWN_BY_PROJECTION	protein_coding	IKZF1	chromosome:C_jacchus3.2.1:8:1:128169293:1	17268000	17364202	D	IKAROS family zinc finger 1 (Ikaros) [Source:HGNC Symbol;Acc:HGNC:13176]
ENSCJAG00000015475	KNOWN_BY_PROJECTION	protein_coding	LAMTOR4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11744793	11752470	R	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 [Source:HGNC Symbol;Acc:HGNC:33772]
ENSCJAG00000010999	KNOWN	protein_coding	FIGNL1	chromosome:C_jacchus3.2.1:8:1:128169293:1	17408760	17414949	R	Fidgetin-like protein 1 {ECO:0000313|EMBL:JAB16277.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020307}  [Source:UniProtKB/TrEMBL;Acc:F7H702]
ENSCJAG00000015496	KNOWN	protein_coding	MBLAC1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11775202	11783546	R	Metallo-beta-lactamase domain-containing protein 1 {ECO:0000313|EMBL:JAB02076.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028530}  [Source:UniProtKB/TrEMBL;Acc:F7B5G6]
ENSCJAG00000015497	KNOWN	protein_coding	CNPY4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11784410	11789984	R	Protein canopy homolog 4 {ECO:0000313|EMBL:JAB06622.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028561}  [Source:UniProtKB/TrEMBL;Acc:F6ZML9]
ENSCJAG00000034667	NOVEL	protein_coding	ENSCJAG00000034667	chromosome:C_jacchus3.2.1:4:1:171630274:1	167152767	167153706	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015293}  [Source:UniProtKB/TrEMBL;Acc:F7FF26]
ENSCJAG00000012508	KNOWN_BY_PROJECTION	protein_coding	T	chromosome:C_jacchus3.2.1:4:1:171630274:1	167222055	167231350	R	T, brachyury homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:11515]
ENSCJAG00000012527	KNOWN	protein_coding	PRR18	chromosome:C_jacchus3.2.1:4:1:171630274:1	167372345	167376067	R	Proline-rich protein 18 {ECO:0000313|EMBL:JAB18506.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022931}  [Source:UniProtKB/TrEMBL;Acc:F7IFA4]
ENSCJAG00000012533	KNOWN_BY_PROJECTION	protein_coding	SFT2D1	chromosome:C_jacchus3.2.1:4:1:171630274:1	167386457	167416239	R	SFT2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21102]
ENSCJAG00000012552	KNOWN_BY_PROJECTION	protein_coding	MPC1	chromosome:C_jacchus3.2.1:4:1:171630274:1	167457321	167474410	R	mitochondrial pyruvate carrier 1 [Source:HGNC Symbol;Acc:HGNC:21606]
ENSCJAG00000017936	NOVEL	protein_coding	ENSCJAG00000017936	chromosome:C_jacchus3.2.1:10:1:132174527:1	117130264	117131999	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033109}  [Source:UniProtKB/TrEMBL;Acc:F6SXQ7]
ENSCJAG00000011007	KNOWN_BY_PROJECTION	protein_coding	DDC	chromosome:C_jacchus3.2.1:8:1:128169293:1	17419905	17522958	R	dopa decarboxylase (aromatic L-amino acid decarboxylase) [Source:HGNC Symbol;Acc:HGNC:2719]
ENSCJAG00000000462	KNOWN_BY_PROJECTION	protein_coding	RPS6KA2	chromosome:C_jacchus3.2.1:4:1:171630274:1	167494402	167724168	R	ribosomal protein S6 kinase, 90kDa, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:10431]
ENSCJAG00000017937	NOVEL	pseudogene	ENSCJAG00000017937	chromosome:C_jacchus3.2.1:10:1:132174527:1	117133045	117133461	R	<no descrition>
ENSCJAG00000017938	KNOWN_BY_PROJECTION	protein_coding	CATSPERB	chromosome:C_jacchus3.2.1:10:1:132174527:1	117142493	117306435	R	catsper channel auxiliary subunit beta [Source:HGNC Symbol;Acc:HGNC:20500]
ENSCJAG00000001248	NOVEL	protein_coding	ENSCJAG00000001248	chromosome:C_jacchus3.2.1:22:1:49145316:1	45559306	45600404	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002186}  [Source:UniProtKB/TrEMBL;Acc:F7IBX0]
ENSCJAG00000001214	KNOWN_BY_PROJECTION	protein_coding	TTYH1	chromosome:C_jacchus3.2.1:22:1:49145316:1	45654524	45673989	D	tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
ENSCJAG00000001225	KNOWN	protein_coding	LENG8	chromosome:C_jacchus3.2.1:22:1:49145316:1	45686216	45699938	D	Leukocyte receptor cluster member 8 {ECO:0000313|EMBL:JAB10358.1}; Leukocyte receptor cluster member 8 (Predicted) {ECO:0000313|EMBL:ABZ80235.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002173}  [Source:UniProtKB/TrEMBL;Acc:B0VXJ5]
ENSCJAG00000015522	KNOWN_BY_PROJECTION	protein_coding	TAF6	chromosome:C_jacchus3.2.1:2:1:204313951:1	11789395	11801473	D	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa [Source:HGNC Symbol;Acc:HGNC:11540]
ENSCJAG00000017940	KNOWN	protein_coding	TC2N	chromosome:C_jacchus3.2.1:10:1:132174527:1	117349200	117446183	R	Tandem C2 domains nuclear protein {ECO:0000313|EMBL:JAB08378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033159}  [Source:UniProtKB/TrEMBL;Acc:F6SAT7]
ENSCJAG00000032769	NOVEL	pseudogene	ENSCJAG00000032769	chromosome:C_jacchus3.2.1:4:1:171630274:1	167627711	167627874	D	<no descrition>
ENSCJAG00000017963	NOVEL	protein_coding	ENSCJAG00000017963	chromosome:C_jacchus3.2.1:10:1:132174527:1	117448061	117531047	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033226}  [Source:UniProtKB/TrEMBL;Acc:F6RBV6]
ENSCJAG00000011054	KNOWN	protein_coding	GRB10	chromosome:C_jacchus3.2.1:8:1:128169293:1	17533300	17750129	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043493}  [Source:UniProtKB/TrEMBL;Acc:F7I373]
ENSCJAG00000001244	NOVEL	pseudogene	ENSCJAG00000001244	chromosome:C_jacchus3.2.1:22:1:49145316:1	45699725	45701633	R	<no descrition>
ENSCJAG00000001246	KNOWN	protein_coding	CDC42EP5	chromosome:C_jacchus3.2.1:22:1:49145316:1	45702446	45723625	R	CDC42 effector protein 5 (Predicted) {ECO:0000313|EMBL:ABZ80237.1}; Cdc42 effector protein 5 {ECO:0000313|EMBL:JAB09994.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002177}  [Source:UniProtKB/TrEMBL;Acc:B0VXJ7]
ENSCJAG00000015515	NOVEL	pseudogene	ENSCJAG00000015515	chromosome:C_jacchus3.2.1:7:1:155834243:1	89808638	89809547	D	<no descrition>
ENSCJAG00000017719	NOVEL	protein_coding	ENSCJAG00000017719	chromosome:C_jacchus3.2.1:22:1:49145316:1	45743137	45879335	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002247}  [Source:UniProtKB/TrEMBL;Acc:F7HVE0]
ENSCJAG00000015521	KNOWN	protein_coding	ACOT11	chromosome:C_jacchus3.2.1:7:1:155834243:1	89820224	89879714	D	Acyl-coenzyme A thioesterase 11 isoform 2 {ECO:0000313|EMBL:JAB07400.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028647}  [Source:UniProtKB/TrEMBL;Acc:F6W6K5]
ENSCJAG00000000469	NOVEL	protein_coding	ENSCJAG00000000469	chromosome:C_jacchus3.2.1:4:1:171630274:1	168040209	168071985	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000797}  [Source:UniProtKB/TrEMBL;Acc:F6RFH0]
ENSCJAG00000011128	NOVEL	pseudogene	ENSCJAG00000011128	chromosome:C_jacchus3.2.1:8:1:128169293:1	17787394	17787994	R	<no descrition>
ENSCJAG00000013644	NOVEL	protein_coding	ENSCJAG00000013644	chromosome:C_jacchus3.2.1:8:1:128169293:1	17846167	17849591	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025089}  [Source:UniProtKB/TrEMBL;Acc:F6XYE2]
ENSCJAG00000000473	KNOWN_BY_PROJECTION	protein_coding	FGFR1OP	chromosome:C_jacchus3.2.1:4:1:171630274:1	168143073	168184224	D	FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGNC:17012]
ENSCJAG00000015564	KNOWN_BY_PROJECTION	protein_coding	FAM151A	chromosome:C_jacchus3.2.1:7:1:155834243:1	89878569	89894275	R	family with sequence similarity 151, member A [Source:HGNC Symbol;Acc:HGNC:25032]
ENSCJAG00000001253	KNOWN_BY_PROJECTION	protein_coding	KIR3DX1	chromosome:C_jacchus3.2.1:22:1:49145316:1	45755805	45759415	R	killer cell immunoglobulin-like receptor, three domains, X1 [Source:HGNC Symbol;Acc:HGNC:25043]
ENSCJAG00000036927	NOVEL	protein_coding	ENSCJAG00000036927	chromosome:C_jacchus3.2.1:22:1:49145316:1	45793304	45794780	D	<no descrition>
ENSCJAG00000017703	NOVEL	protein_coding	ENSCJAG00000017703	chromosome:C_jacchus3.2.1:22:1:49145316:1	45889862	45913402	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032655}  [Source:UniProtKB/TrEMBL;Acc:F7DI87]
ENSCJAG00000000497	KNOWN_BY_PROJECTION	protein_coding	CCR6	chromosome:C_jacchus3.2.1:4:1:171630274:1	168286032	168287260	D	chemokine (C-C motif) receptor 6 [Source:HGNC Symbol;Acc:HGNC:1607]
ENSCJAG00000000501	KNOWN_BY_PROJECTION	protein_coding	GPR31	chromosome:C_jacchus3.2.1:4:1:171630274:1	168310406	168311507	R	G protein-coupled receptor 31 [Source:HGNC Symbol;Acc:HGNC:4486]
ENSCJAG00000013648	KNOWN_BY_PROJECTION	protein_coding	COBL	chromosome:C_jacchus3.2.1:8:1:128169293:1	17943830	18238492	R	cordon-bleu WH2 repeat protein [Source:HGNC Symbol;Acc:HGNC:22199]
ENSCJAG00000012850	KNOWN_BY_PROJECTION	protein_coding	UNC93A	chromosome:C_jacchus3.2.1:4:1:171630274:1	168364577	168385087	D	unc-93 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12570]
ENSCJAG00000012875	NOVEL	protein_coding	ENSCJAG00000012875	chromosome:C_jacchus3.2.1:4:1:171630274:1	168417496	168459215	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023576}  [Source:UniProtKB/TrEMBL;Acc:F7I1I7]
ENSCJAG00000017689	NOVEL	protein_coding	ENSCJAG00000017689	chromosome:C_jacchus3.2.1:22:1:49145316:1	45933865	45948189	D	<no descrition>
ENSCJAG00000017677	KNOWN_BY_PROJECTION	protein_coding	TNNI3	chromosome:C_jacchus3.2.1:22:1:49145316:1	45967749	45972940	R	troponin I type 3 (cardiac) [Source:HGNC Symbol;Acc:HGNC:11947]
ENSCJAG00000037512	NOVEL	protein_coding	ENSCJAG00000037512	chromosome:C_jacchus3.2.1:4:1:171630274:1	168436793	168453642	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050076}  [Source:UniProtKB/TrEMBL;Acc:F7FCW2]
ENSCJAG00000014691	NOVEL	pseudogene	ENSCJAG00000014691	chromosome:C_jacchus3.2.1:4:1:171630274:1	168821893	168822020	R	<no descrition>
ENSCJAG00000014698	NOVEL	pseudogene	ENSCJAG00000014698	chromosome:C_jacchus3.2.1:4:1:171630274:1	168826682	168827235	D	<no descrition>
ENSCJAG00000033973	NOVEL	protein_coding	ENSCJAG00000033973	chromosome:C_jacchus3.2.1:4:1:171630274:1	168862805	168863215	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042009}  [Source:UniProtKB/TrEMBL;Acc:F6S3S2]
ENSCJAG00000015542	KNOWN_BY_PROJECTION	protein_coding	AP4M1	chromosome:C_jacchus3.2.1:2:1:204313951:1	11798368	11807620	R	adaptor-related protein complex 4, mu 1 subunit [Source:HGNC Symbol;Acc:HGNC:574]
ENSCJAG00000014702	KNOWN	protein_coding	MLLT4	chromosome:C_jacchus3.2.1:4:1:171630274:1	168901269	169007711	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027122}  [Source:UniProtKB/TrEMBL;Acc:F7CWW2]
ENSCJAG00000002033	NOVEL	protein_coding	ENSCJAG00000002033	chromosome:C_jacchus3.2.1:8:1:128169293:1	18887788	18889286	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003658}  [Source:UniProtKB/TrEMBL;Acc:F7H4J8]
ENSCJAG00000002030	NOVEL	pseudogene	ENSCJAG00000002030	chromosome:C_jacchus3.2.1:8:1:128169293:1	19942851	19943703	D	<no descrition>
ENSCJAG00000017672	NOVEL	protein_coding	ENSCJAG00000017672	chromosome:C_jacchus3.2.1:22:1:49145316:1	45974703	45985658	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045634}  [Source:UniProtKB/TrEMBL;Acc:F6QNW4]
ENSCJAG00000002013	KNOWN_BY_PROJECTION	protein_coding	VSTM2A	chromosome:C_jacchus3.2.1:8:1:128169293:1	21429433	21456909	D	V-set and transmembrane domain containing 2A [Source:HGNC Symbol;Acc:HGNC:28499]
ENSCJAG00000001060	KNOWN_BY_PROJECTION	protein_coding	SEC61G	chromosome:C_jacchus3.2.1:8:1:128169293:1	21690951	21703523	R	Sec61 gamma subunit [Source:HGNC Symbol;Acc:HGNC:18277]
ENSCJAG00000017651	KNOWN	protein_coding	SYT5	chromosome:C_jacchus3.2.1:22:1:49145316:1	45990674	45997139	R	Synaptotagmin-5 {ECO:0000313|EMBL:JAB19717.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032555}  [Source:UniProtKB/TrEMBL;Acc:F7G9H5]
ENSCJAG00000018025	KNOWN	protein_coding	ATXN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	117483688	117689710	R	Ataxin-3 reference isoform {ECO:0000313|EMBL:JAB06101.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033381}  [Source:UniProtKB/TrEMBL;Acc:F6SV02]
ENSCJAG00000000989	KNOWN_BY_PROJECTION	protein_coding	EGFR	chromosome:C_jacchus3.2.1:8:1:128169293:1	22013453	22222106	D	epidermal growth factor receptor [Source:HGNC Symbol;Acc:HGNC:3236]
ENSCJAG00000017640	KNOWN_BY_PROJECTION	protein_coding	PTPRH	chromosome:C_jacchus3.2.1:22:1:49145316:1	45999770	46025912	R	protein tyrosine phosphatase, receptor type, H [Source:HGNC Symbol;Acc:HGNC:9672]
ENSCJAG00000017626	KNOWN_BY_PROJECTION	protein_coding	TMEM86B	chromosome:C_jacchus3.2.1:22:1:49145316:1	46058664	46060188	R	transmembrane protein 86B [Source:HGNC Symbol;Acc:HGNC:28448]
ENSCJAG00000017595	KNOWN	protein_coding	PPP6R1	chromosome:C_jacchus3.2.1:22:1:49145316:1	46061238	46092847	R	Serine/threonine-protein phosphatase 6 regulatory subunit 1 {ECO:0000313|EMBL:JAB33616.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032456}  [Source:UniProtKB/TrEMBL;Acc:F7D1K3]
ENSCJAG00000015580	NOVEL	protein_coding	ENSCJAG00000015580	chromosome:C_jacchus3.2.1:7:1:155834243:1	89903499	89975278	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051280}  [Source:UniProtKB/TrEMBL;Acc:F6V0L4]
ENSCJAG00000017995	KNOWN_BY_PROJECTION	protein_coding	TRIP11	chromosome:C_jacchus3.2.1:10:1:132174527:1	117551652	117629685	R	thyroid hormone receptor interactor 11 [Source:HGNC Symbol;Acc:HGNC:12305]
ENSCJAG00000000809	KNOWN	protein_coding	HSPBP1	chromosome:C_jacchus3.2.1:22:1:49145316:1	46106980	46114189	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001380}  [Source:UniProtKB/TrEMBL;Acc:F7B0W7]
ENSCJAG00000000988	NOVEL	pseudogene	ENSCJAG00000000988	chromosome:C_jacchus3.2.1:8:1:128169293:1	22307064	22307422	D	<no descrition>
ENSCJAG00000000812	KNOWN_BY_PROJECTION	protein_coding	BRSK1	chromosome:C_jacchus3.2.1:22:1:49145316:1	46123523	46148434	D	BR serine/threonine kinase 1 [Source:HGNC Symbol;Acc:HGNC:18994]
ENSCJAG00000000972	KNOWN	protein_coding	LANCL2	chromosome:C_jacchus3.2.1:8:1:128169293:1	22371798	22434537	D	LanC-like protein 2 {ECO:0000313|EMBL:JAB48839.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001682}  [Source:UniProtKB/TrEMBL;Acc:F7BX97]
ENSCJAG00000000838	KNOWN_BY_PROJECTION	protein_coding	TMEM150B	chromosome:C_jacchus3.2.1:22:1:49145316:1	46157472	46162035	R	transmembrane protein 150B [Source:HGNC Symbol;Acc:HGNC:34415]
ENSCJAG00000033004	KNOWN_BY_PROJECTION	protein_coding	KIF25	chromosome:C_jacchus3.2.1:4:1:171630274:1	169076394	169086224	D	kinesin family member 25 [Source:HGNC Symbol;Acc:HGNC:6390]
ENSCJAG00000000843	KNOWN_BY_PROJECTION	protein_coding	SUV420H2	chromosome:C_jacchus3.2.1:22:1:49145316:1	46180147	46185073	D	suppressor of variegation 4-20 homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:28405]
ENSCJAG00000014741	KNOWN_BY_PROJECTION	protein_coding	FRMD1	chromosome:C_jacchus3.2.1:4:1:171630274:1	169095572	169116123	R	FERM domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21240]
ENSCJAG00000000971	NOVEL	protein_coding	ENSCJAG00000000971	chromosome:C_jacchus3.2.1:8:1:128169293:1	22437872	22440288	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046099}  [Source:UniProtKB/TrEMBL;Acc:F6YU01]
ENSCJAG00000000965	KNOWN	protein_coding	VOPP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	22470352	22562179	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001650}; Vesicular, overexpressed in cancer, prosurvival protein 1 {ECO:0000313|EMBL:JAB03767.1}  [Source:UniProtKB/TrEMBL;Acc:F7CSK9]
ENSCJAG00000000969	NOVEL	pseudogene	ENSCJAG00000000969	chromosome:C_jacchus3.2.1:8:1:128169293:1	22515291	22516706	D	<no descrition>
ENSCJAG00000000849	KNOWN_BY_PROJECTION	protein_coding	COX6B2	chromosome:C_jacchus3.2.1:22:1:49145316:1	46189310	46194998	R	cytochrome c oxidase subunit VIb polypeptide 2 (testis) [Source:HGNC Symbol;Acc:HGNC:24380]
ENSCJAG00000031878	NOVEL	pseudogene	ENSCJAG00000031878	chromosome:C_jacchus3.2.1:8:1:128169293:1	22659568	22660103	D	<no descrition>
ENSCJAG00000000853	KNOWN_BY_PROJECTION	protein_coding	FAM71E2	chromosome:C_jacchus3.2.1:22:1:49145316:1	46200069	46205805	R	family with sequence similarity 71, member E2 [Source:HGNC Symbol;Acc:HGNC:25278]
ENSCJAG00000015611	NOVEL	protein_coding	ENSCJAG00000015611	chromosome:C_jacchus3.2.1:7:1:155834243:1	89979861	90006444	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028782}  [Source:UniProtKB/TrEMBL;Acc:F7A2Y5]
ENSCJAG00000003529	KNOWN_BY_PROJECTION	protein_coding	DACT2	chromosome:C_jacchus3.2.1:4:1:171630274:1	169319972	169332047	R	dishevelled-binding antagonist of beta-catenin 2 [Source:HGNC Symbol;Acc:HGNC:21231]
ENSCJAG00000000858	KNOWN_BY_PROJECTION	protein_coding	IL11	chromosome:C_jacchus3.2.1:22:1:49145316:1	46208137	46215314	R	interleukin 11 [Source:HGNC Symbol;Acc:HGNC:5966]
ENSCJAG00000009021	KNOWN	protein_coding	PPP1R17	chromosome:C_jacchus3.2.1:8:1:128169293:1	24095689	24117027	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016523}  [Source:UniProtKB/TrEMBL;Acc:F7C4Q0]
ENSCJAG00000031946	NOVEL	protein_coding	ENSCJAG00000031946	chromosome:C_jacchus3.2.1:4:1:171630274:1	169369880	169557067	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006377}  [Source:UniProtKB/TrEMBL;Acc:F7DYW0]
ENSCJAG00000003514	NOVEL	protein_coding	ENSCJAG00000003514	chromosome:C_jacchus3.2.1:4:1:171630274:1	169615434	169664098	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006389}  [Source:UniProtKB/TrEMBL;Acc:F7DIB9]
ENSCJAG00000003511	NOVEL	pseudogene	ENSCJAG00000003511	chromosome:C_jacchus3.2.1:4:1:171630274:1	169750795	169751060	R	<no descrition>
ENSCJAG00000009007	KNOWN_BY_PROJECTION	protein_coding	CCDC129	chromosome:C_jacchus3.2.1:8:1:128169293:1	24149360	24287529	R	coiled-coil domain containing 129 [Source:HGNC Symbol;Acc:HGNC:27363]
ENSCJAG00000003506	KNOWN_BY_PROJECTION	protein_coding	THBS2	chromosome:C_jacchus3.2.1:4:1:171630274:1	170245753	170288435	R	thrombospondin 2 [Source:HGNC Symbol;Acc:HGNC:11786]
ENSCJAG00000015633	KNOWN	protein_coding	PARS2	chromosome:C_jacchus3.2.1:7:1:155834243:1	90019437	90025274	R	Putative proline--tRNA ligase, mitochondrial {ECO:0000313|EMBL:JAB10787.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028788}  [Source:UniProtKB/TrEMBL;Acc:F7A2V0]
ENSCJAG00000000864	KNOWN_BY_PROJECTION	protein_coding	TMEM190	chromosome:C_jacchus3.2.1:22:1:49145316:1	46222903	46224042	D	transmembrane protein 190 [Source:HGNC Symbol;Acc:HGNC:29632]
ENSCJAG00000015639	KNOWN_BY_PROJECTION	protein_coding	TTC22	chromosome:C_jacchus3.2.1:7:1:155834243:1	90043490	90066068	R	tetratricopeptide repeat domain 22 [Source:HGNC Symbol;Acc:HGNC:26067]
ENSCJAG00000022190	KNOWN_BY_PROJECTION	protein_coding	TMEM238	chromosome:C_jacchus3.2.1:22:1:49145316:1	46224994	46231318	R	transmembrane protein 238 [Source:HGNC Symbol;Acc:HGNC:40042]
ENSCJAG00000000869	KNOWN_BY_PROJECTION	protein_coding	RPL28	chromosome:C_jacchus3.2.1:22:1:49145316:1	46232958	46235813	D	ribosomal protein L28 [Source:HGNC Symbol;Acc:HGNC:10330]
ENSCJAG00000018067	KNOWN_BY_PROJECTION	protein_coding	NDUFB1	chromosome:C_jacchus3.2.1:10:1:132174527:1	117707532	117717777	R	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa [Source:HGNC Symbol;Acc:HGNC:7695]
ENSCJAG00000000874	KNOWN	protein_coding	UBE2S	chromosome:C_jacchus3.2.1:22:1:49145316:1	46242301	46248912	R	Ubiquitin-conjugating enzyme E2 S {ECO:0000313|EMBL:JAB04779.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001499}  [Source:UniProtKB/TrEMBL;Acc:F6VFN3]
ENSCJAG00000018069	KNOWN	protein_coding	CPSF2	chromosome:C_jacchus3.2.1:10:1:132174527:1	117717946	117759465	D	Cleavage and polyadenylation specificity factor subunit 2 {ECO:0000313|EMBL:JAB03846.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033454}  [Source:UniProtKB/TrEMBL;Acc:F6R015]
ENSCJAG00000015583	KNOWN	protein_coding	MCM7	chromosome:C_jacchus3.2.1:2:1:204313951:1	11807324	11815652	D	DNA replication licensing factor MCM7 isoform 1 {ECO:0000313|EMBL:JAB04361.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044674}  [Source:UniProtKB/TrEMBL;Acc:F7HBN8]
ENSCJAG00000000882	NOVEL	pseudogene	ENSCJAG00000000882	chromosome:C_jacchus3.2.1:22:1:49145316:1	46270895	46271570	R	<no descrition>
ENSCJAG00000032960	KNOWN_BY_PROJECTION	protein_coding	SHISA7	chromosome:C_jacchus3.2.1:22:1:49145316:1	46272704	46281005	R	shisa family member 7 [Source:HGNC Symbol;Acc:HGNC:35409]
ENSCJAG00000008997	KNOWN	protein_coding	NEUROD6	chromosome:C_jacchus3.2.1:8:1:128169293:1	24479983	24483456	D	Neurogenic differentiation factor {ECO:0000256|PIRNR:PIRNR015618}  [Source:UniProtKB/TrEMBL;Acc:F6W8J2]
ENSCJAG00000003481	KNOWN_BY_PROJECTION	protein_coding	WDR27	chromosome:C_jacchus3.2.1:4:1:171630274:1	170499278	170820916	R	WD repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:21248]
ENSCJAG00000017068	KNOWN_BY_PROJECTION	protein_coding	ISOC2	chromosome:C_jacchus3.2.1:22:1:49145316:1	46286784	46296584	R	isochorismatase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26278]
ENSCJAG00000008919	KNOWN_BY_PROJECTION	protein_coding	ADCYAP1R1	chromosome:C_jacchus3.2.1:8:1:128169293:1	24676733	24735277	R	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I [Source:HGNC Symbol;Acc:HGNC:242]
ENSCJAG00000017078	KNOWN	protein_coding	NAT14	chromosome:C_jacchus3.2.1:22:1:49145316:1	46321709	46323599	D	N-acetyltransferase 14 {ECO:0000313|EMBL:JAB03785.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031393}  [Source:UniProtKB/TrEMBL;Acc:F7IPE2]
ENSCJAG00000017084	KNOWN_BY_PROJECTION	protein_coding	SSC5D	chromosome:C_jacchus3.2.1:22:1:49145316:1	46324563	46352061	D	scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
ENSCJAG00000015646	KNOWN_BY_PROJECTION	protein_coding	C1orf177	chromosome:C_jacchus3.2.1:7:1:155834243:1	90071802	90090955	D	chromosome 1 open reading frame 177 [Source:HGNC Symbol;Acc:HGNC:26854]
ENSCJAG00000018103	KNOWN	protein_coding	SLC24A4	chromosome:C_jacchus3.2.1:10:1:132174527:1	117915331	118098100	D	Sodium/potassium/calcium exchanger 4 isoform 2 {ECO:0000313|EMBL:JAB24504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033502}  [Source:UniProtKB/TrEMBL;Acc:F6PIT7]
ENSCJAG00000015653	KNOWN_BY_PROJECTION	protein_coding	DHCR24	chromosome:C_jacchus3.2.1:7:1:155834243:1	90100753	90131937	R	24-dehydrocholesterol reductase [Source:HGNC Symbol;Acc:HGNC:2859]
ENSCJAG00000015669	KNOWN_BY_PROJECTION	protein_coding	TMEM61	chromosome:C_jacchus3.2.1:7:1:155834243:1	90232031	90238150	D	transmembrane protein 61 [Source:HGNC Symbol;Acc:HGNC:27296]
ENSCJAG00000008909	NOVEL	pseudogene	ENSCJAG00000008909	chromosome:C_jacchus3.2.1:8:1:128169293:1	24746172	24746972	D	<no descrition>
ENSCJAG00000017097	KNOWN_BY_PROJECTION	protein_coding	SBK2	chromosome:C_jacchus3.2.1:22:1:49145316:1	46370322	46376256	R	SH3 domain binding kinase family, member 2 [Source:HGNC Symbol;Acc:HGNC:34416]
ENSCJAG00000017103	KNOWN_BY_PROJECTION	protein_coding	SBK3	chromosome:C_jacchus3.2.1:22:1:49145316:1	46381791	46385909	R	SH3 domain binding kinase family, member 3 [Source:HGNC Symbol;Acc:HGNC:44121]
ENSCJAG00000008846	KNOWN_BY_PROJECTION	protein_coding	GHRHR	chromosome:C_jacchus3.2.1:8:1:128169293:1	24809082	24825775	R	growth hormone releasing hormone receptor [Source:HGNC Symbol;Acc:HGNC:4266]
ENSCJAG00000017105	KNOWN	protein_coding	ZNF579	chromosome:C_jacchus3.2.1:22:1:49145316:1	46446269	46468348	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031448}  [Source:UniProtKB/TrEMBL;Acc:F7ICM4]
ENSCJAG00000032455	KNOWN_BY_PROJECTION	protein_coding	ZNF865	chromosome:C_jacchus3.2.1:22:1:49145316:1	46473609	46488905	D	zinc finger protein 865 [Source:HGNC Symbol;Acc:HGNC:38705]
ENSCJAG00000036303	KNOWN	protein_coding	AQP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	24852306	24943387	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042834}  [Source:UniProtKB/TrEMBL;Acc:F7AM18]
ENSCJAG00000003474	NOVEL	protein_coding	ENSCJAG00000003474	chromosome:C_jacchus3.2.1:4:1:171630274:1	170820921	170821754	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006308}  [Source:UniProtKB/TrEMBL;Acc:F7F573]
ENSCJAG00000003436	KNOWN_BY_PROJECTION	protein_coding	PHF10	chromosome:C_jacchus3.2.1:4:1:171630274:1	170822636	170896859	R	PHD finger protein 10 [Source:HGNC Symbol;Acc:HGNC:18250]
ENSCJAG00000008833	KNOWN_BY_PROJECTION	protein_coding	FAM188B	chromosome:C_jacchus3.2.1:8:1:128169293:1	24854017	25034476	R	family with sequence similarity 188, member B [Source:HGNC Symbol;Acc:HGNC:21916]
ENSCJAG00000017118	KNOWN	protein_coding	ZNF784	chromosome:C_jacchus3.2.1:22:1:49145316:1	46492593	46496409	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031463}; Zinc finger protein 784 {ECO:0000313|EMBL:JAB01803.1}  [Source:UniProtKB/TrEMBL;Acc:F7IAA5]
ENSCJAG00000017122	NOVEL	pseudogene	ENSCJAG00000017122	chromosome:C_jacchus3.2.1:22:1:49145316:1	46501891	46502332	R	<no descrition>
ENSCJAG00000017124	KNOWN	protein_coding	ZNF580	chromosome:C_jacchus3.2.1:22:1:49145316:1	46513330	46515632	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031470}; Zinc finger protein 580 {ECO:0000313|EMBL:JAB03971.1}  [Source:UniProtKB/TrEMBL;Acc:F7I7Z6]
ENSCJAG00000017098	KNOWN	protein_coding	CCDC106	chromosome:C_jacchus3.2.1:22:1:49145316:1	46519907	46525616	D	Coiled-coil domain-containing protein 106 {ECO:0000313|EMBL:JAB10671.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031424}  [Source:UniProtKB/TrEMBL;Acc:F7IHD1]
ENSCJAG00000017128	KNOWN_BY_PROJECTION	protein_coding	U2AF2	chromosome:C_jacchus3.2.1:22:1:49145316:1	46527653	46541692	D	U2 small nuclear RNA auxiliary factor 2 [Source:HGNC Symbol;Acc:HGNC:23156]
ENSCJAG00000008786	NOVEL	protein_coding	ENSCJAG00000008786	chromosome:C_jacchus3.2.1:8:1:128169293:1	25044544	25048474	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016136}  [Source:UniProtKB/TrEMBL;Acc:F7BS30]
ENSCJAG00000018131	KNOWN_BY_PROJECTION	protein_coding	RIN3	chromosome:C_jacchus3.2.1:10:1:132174527:1	118116885	118302241	D	Ras and Rab interactor 3 [Source:HGNC Symbol;Acc:HGNC:18751]
ENSCJAG00000008694	KNOWN_BY_PROJECTION	protein_coding	CRHR2	chromosome:C_jacchus3.2.1:8:1:128169293:1	25112494	25138408	D	corticotropin releasing hormone receptor 2 [Source:HGNC Symbol;Acc:HGNC:2358]
ENSCJAG00000017140	KNOWN_BY_PROJECTION	protein_coding	EPN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	46548309	46567244	D	epsin 1 [Source:HGNC Symbol;Acc:HGNC:21604]
ENSCJAG00000017166	NOVEL	protein_coding	ENSCJAG00000017166	chromosome:C_jacchus3.2.1:22:1:49145316:1	46587104	46598286	D	Sulfotransferase {ECO:0000256|RuleBase:RU361155}  [Source:UniProtKB/TrEMBL;Acc:F7HSA3]
ENSCJAG00000017175	NOVEL	protein_coding	ENSCJAG00000017175	chromosome:C_jacchus3.2.1:22:1:49145316:1	46612233	46645903	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031587}  [Source:UniProtKB/TrEMBL;Acc:F7IRL4]
ENSCJAG00000003429	KNOWN_BY_PROJECTION	protein_coding	TCTE3	chromosome:C_jacchus3.2.1:4:1:171630274:1	170857625	170869087	R	t-complex-associated-testis-expressed 3 [Source:HGNC Symbol;Acc:HGNC:11695]
ENSCJAG00000003391	KNOWN	protein_coding	ERMARD	chromosome:C_jacchus3.2.1:4:1:171630274:1	170869169	170899441	D	Transmembrane protein C6orf70 {ECO:0000313|EMBL:JAB22549.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006213}  [Source:UniProtKB/TrEMBL;Acc:F7H6K5]
ENSCJAG00000032099	NOVEL	protein_coding	ENSCJAG00000032099	chromosome:C_jacchus3.2.1:22:1:49145316:1	46650239	46690240	D	<no descrition>
ENSCJAG00000020267	NOVEL	pseudogene	ENSCJAG00000020267	chromosome:C_jacchus3.2.1:22:1:49145316:1	46669690	46670009	R	<no descrition>
ENSCJAG00000020268	KNOWN_BY_PROJECTION	protein_coding	ZNF787	chromosome:C_jacchus3.2.1:22:1:49145316:1	46707966	46712980	R	zinc finger protein 787 [Source:HGNC Symbol;Acc:HGNC:26998]
ENSCJAG00000020269	KNOWN	protein_coding	ZNF444	chromosome:C_jacchus3.2.1:22:1:49145316:1	46745869	46762824	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037675}  [Source:UniProtKB/TrEMBL;Acc:F6ZDY2]
ENSCJAG00000008595	KNOWN	protein_coding	GARS	chromosome:C_jacchus3.2.1:8:1:128169293:1	25159577	25198845	R	Glycine--tRNA ligase {ECO:0000313|EMBL:JAB14881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015978}  [Source:UniProtKB/TrEMBL;Acc:F7DAA3]
ENSCJAG00000018162	KNOWN_BY_PROJECTION	protein_coding	LGMN	chromosome:C_jacchus3.2.1:10:1:132174527:1	118317366	118348239	R	legumain [Source:HGNC Symbol;Acc:HGNC:9472]
ENSCJAG00000020271	KNOWN_BY_PROJECTION	protein_coding	GALP	chromosome:C_jacchus3.2.1:22:1:49145316:1	46780266	46792223	D	galanin-like peptide [Source:HGNC Symbol;Acc:HGNC:24840]
ENSCJAG00000020275	NOVEL	protein_coding	ENSCJAG00000020275	chromosome:C_jacchus3.2.1:22:1:49145316:1	46795301	46816906	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037693}  [Source:UniProtKB/TrEMBL;Acc:F6YWD8]
ENSCJAG00000037918	NOVEL	protein_coding	ENSCJAG00000037918	chromosome:C_jacchus3.2.1:22:1:49145316:1	46830185	46834288	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037694}  [Source:UniProtKB/TrEMBL;Acc:F6YWB8]
ENSCJAG00000020279	NOVEL	protein_coding	ENSCJAG00000020279	chromosome:C_jacchus3.2.1:22:1:49145316:1	46852294	46855957	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037696}  [Source:UniProtKB/TrEMBL;Acc:F6YW92]
ENSCJAG00000020281	NOVEL	protein_coding	ENSCJAG00000020281	chromosome:C_jacchus3.2.1:22:1:49145316:1	46958439	46959648	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037699}  [Source:UniProtKB/TrEMBL;Acc:F6YW67]
ENSCJAG00000008589	KNOWN	protein_coding	GGCT	chromosome:C_jacchus3.2.1:8:1:128169293:1	25253283	25262272	D	Gamma-glutamylcyclotransferase isoform 1 {ECO:0000313|EMBL:JAB10764.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015823}  [Source:UniProtKB/TrEMBL;Acc:F7GU22]
ENSCJAG00000020658	KNOWN	protein_coding	DLL1	chromosome:C_jacchus3.2.1:4:1:171630274:1	171325359	171333946	R	Delta-like protein {ECO:0000256|RuleBase:RU280815}  [Source:UniProtKB/TrEMBL;Acc:F7HV63]
ENSCJAG00000008570	KNOWN	protein_coding	NOD1	chromosome:C_jacchus3.2.1:8:1:128169293:1	25271252	25327441	D	Nucleotide-binding oligomerization domain-containing protein 1 {ECO:0000313|EMBL:JAB12459.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015813}  [Source:UniProtKB/TrEMBL;Acc:F7GYY3]
ENSCJAG00000020283	KNOWN_BY_PROJECTION	protein_coding	ZNF582	chromosome:C_jacchus3.2.1:22:1:49145316:1	46966086	46977682	R	zinc finger protein 582 [Source:HGNC Symbol;Acc:HGNC:26421]
ENSCJAG00000020288	KNOWN_BY_PROJECTION	protein_coding	ZNF583	chromosome:C_jacchus3.2.1:22:1:49145316:1	46987129	47006769	D	zinc finger protein 583 [Source:HGNC Symbol;Acc:HGNC:26427]
ENSCJAG00000008548	NOVEL	protein_coding	ENSCJAG00000008548	chromosome:C_jacchus3.2.1:8:1:128169293:1	25377145	25377988	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015784}  [Source:UniProtKB/TrEMBL;Acc:F7DBK7]
ENSCJAG00000008540	KNOWN_BY_PROJECTION	protein_coding	ZNRF2	chromosome:C_jacchus3.2.1:8:1:128169293:1	25382012	25472029	R	zinc and ring finger 2, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:22316]
ENSCJAG00000020292	KNOWN	protein_coding	ZNF667	chromosome:C_jacchus3.2.1:22:1:49145316:1	47022634	47070957	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037722}; Zinc finger protein 667 {ECO:0000313|EMBL:JAB16982.1}  [Source:UniProtKB/TrEMBL;Acc:F6VY88]
ENSCJAG00000008537	KNOWN	protein_coding	C7ORF41	chromosome:C_jacchus3.2.1:8:1:128169293:1	25591834	25626396	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015727}  [Source:UniProtKB/TrEMBL;Acc:F7EKP6]
ENSCJAG00000018184	KNOWN	protein_coding	GOLGA5	chromosome:C_jacchus3.2.1:10:1:132174527:1	118397619	118435260	D	Golgin subfamily A member 5 {ECO:0000313|EMBL:JAB03813.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033715}  [Source:UniProtKB/TrEMBL;Acc:F6U0M8]
ENSCJAG00000008504	KNOWN	protein_coding	PLEKHA8	chromosome:C_jacchus3.2.1:8:1:128169293:1	25672108	25728824	R	Pleckstrin homology domain-containing family A member 8 isoform 1 {ECO:0000313|EMBL:JAB09107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015700}  [Source:UniProtKB/TrEMBL;Acc:F7EZP9]
ENSCJAG00000008498	KNOWN	protein_coding	FKBP14	chromosome:C_jacchus3.2.1:8:1:128169293:1	25730565	25743543	D	Peptidyl-prolyl cis-trans isomerase FKBP14 {ECO:0000313|EMBL:JAB03482.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015641}  [Source:UniProtKB/TrEMBL;Acc:F7GZI4]
ENSCJAG00000020296	KNOWN	protein_coding	ZNF471	chromosome:C_jacchus3.2.1:22:1:49145316:1	47092812	47110091	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037724}; Zinc finger protein 471 {ECO:0000313|EMBL:JAB20039.1}  [Source:UniProtKB/TrEMBL;Acc:F6VY49]
ENSCJAG00000020297	NOVEL	protein_coding	ENSCJAG00000020297	chromosome:C_jacchus3.2.1:22:1:49145316:1	47122221	47149401	D	<no descrition>
ENSCJAG00000020302	NOVEL	protein_coding	ENSCJAG00000020302	chromosome:C_jacchus3.2.1:22:1:49145316:1	47165583	47217627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037742}  [Source:UniProtKB/TrEMBL;Acc:F6VD45]
ENSCJAG00000008478	KNOWN_BY_PROJECTION	protein_coding	SCRN1	chromosome:C_jacchus3.2.1:8:1:128169293:1	25767125	25835356	D	secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
ENSCJAG00000010061	KNOWN_BY_PROJECTION	protein_coding	ZNF835	chromosome:C_jacchus3.2.1:22:1:49145316:1	47258438	47260140	R	zinc finger protein 835 [Source:HGNC Symbol;Acc:HGNC:34332]
ENSCJAG00000008466	KNOWN_BY_PROJECTION	protein_coding	WIPF3	chromosome:C_jacchus3.2.1:8:1:128169293:1	25843243	26064768	R	WAS/WASL interacting protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:22004]
ENSCJAG00000010044	KNOWN_BY_PROJECTION	protein_coding	PEG3	chromosome:C_jacchus3.2.1:22:1:49145316:1	47422136	47474186	R	paternally expressed 3 [Source:HGNC Symbol;Acc:HGNC:8826]
ENSCJAG00000037027	KNOWN_BY_PROJECTION	protein_coding	PRR15	chromosome:C_jacchus3.2.1:8:1:128169293:1	26061532	26065052	R	proline rich 15 [Source:HGNC Symbol;Acc:HGNC:22310]
ENSCJAG00000020655	KNOWN_BY_PROJECTION	protein_coding	FAM120B	chromosome:C_jacchus3.2.1:4:1:171630274:1	171351168	171457530	D	family with sequence similarity 120B [Source:HGNC Symbol;Acc:HGNC:21109]
ENSCJAG00000023287	NOVEL	pseudogene	ENSCJAG00000023287	chromosome:C_jacchus3.2.1:4:1:171630274:1	171390384	171391262	R	<no descrition>
ENSCJAG00000020634	NOVEL	protein_coding	ENSCJAG00000020634	chromosome:C_jacchus3.2.1:4:1:171630274:1	171521709	171612409	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038360}  [Source:UniProtKB/TrEMBL;Acc:F7I6Z0]
ENSCJAG00000010038	NOVEL	protein_coding	ENSCJAG00000010038	chromosome:C_jacchus3.2.1:22:1:49145316:1	47594885	47595945	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018432}  [Source:UniProtKB/TrEMBL;Acc:F7H0Y0]
ENSCJAG00000023199	NOVEL	pseudogene	ENSCJAG00000023199	chromosome:C_jacchus3.2.1:22:1:49145316:1	47682190	47682602	D	<no descrition>
ENSCJAG00000008406	KNOWN	protein_coding	CHN2	chromosome:C_jacchus3.2.1:8:1:128169293:1	26143273	26465835	R	Beta-chimaerin isoform 2 {ECO:0000313|EMBL:JAB05875.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015559}  [Source:UniProtKB/TrEMBL;Acc:F7E8S7]
ENSCJAG00000018227	KNOWN_BY_PROJECTION	protein_coding	CHGA	chromosome:C_jacchus3.2.1:10:1:132174527:1	118519794	118532531	D	chromogranin A (parathyroid secretory protein 1) [Source:HGNC Symbol;Acc:HGNC:1929]
ENSCJAG00000000018	KNOWN_BY_PROJECTION	protein_coding	USP29	chromosome:C_jacchus3.2.1:22:1:49145316:1	47695865	47703816	D	ubiquitin specific peptidase 29 [Source:HGNC Symbol;Acc:HGNC:18563]
ENSCJAG00000000020	KNOWN_BY_PROJECTION	protein_coding	ZIM3	chromosome:C_jacchus3.2.1:22:1:49145316:1	47707621	47710440	R	zinc finger, imprinted 3 [Source:HGNC Symbol;Acc:HGNC:16366]
ENSCJAG00000000022	KNOWN_BY_PROJECTION	protein_coding	ZNF264	chromosome:C_jacchus3.2.1:22:1:49145316:1	47753472	47776606	D	zinc finger protein 264 [Source:HGNC Symbol;Acc:HGNC:13057]
ENSCJAG00000000023	KNOWN_BY_PROJECTION	protein_coding	AURKC	chromosome:C_jacchus3.2.1:22:1:49145316:1	47793104	47799062	D	aurora kinase C [Source:HGNC Symbol;Acc:HGNC:11391]
ENSCJAG00000018249	KNOWN	protein_coding	ITPK1	chromosome:C_jacchus3.2.1:10:1:132174527:1	118537987	118724861	R	Inositol-tetrakisphosphate 1-kinase isoform a {ECO:0000313|EMBL:JAB02236.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033790}  [Source:UniProtKB/TrEMBL;Acc:F6SGC7]
ENSCJAG00000020644	KNOWN	protein_coding	PSMB1	chromosome:C_jacchus3.2.1:4:1:171630274:1	171559807	171579000	R	Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}  [Source:UniProtKB/TrEMBL;Acc:F7I4K9]
ENSCJAG00000008379	KNOWN_BY_PROJECTION	protein_coding	CPVL	chromosome:C_jacchus3.2.1:8:1:128169293:1	26516522	26765156	D	carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:HGNC:14399]
ENSCJAG00000018280	KNOWN	protein_coding	C10H14ORF109	chromosome:C_jacchus3.2.1:10:1:132174527:1	118782212	118784230	D	Transmembrane protein 251 isoform 1 {ECO:0000313|EMBL:JAB12897.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033836}  [Source:UniProtKB/TrEMBL;Acc:F6R775]
ENSCJAG00000018282	KNOWN	protein_coding	C14ORF142	chromosome:C_jacchus3.2.1:10:1:132174527:1	118802916	118806033	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033840}; Uncharacterized protein C14orf142 {ECO:0000313|EMBL:JAB02269.1}  [Source:UniProtKB/TrEMBL;Acc:F6QXU8]
ENSCJAG00000035669	NOVEL	protein_coding	ENSCJAG00000035669	chromosome:C_jacchus3.2.1:10:1:132174527:1	118803222	118805778	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042685}  [Source:UniProtKB/TrEMBL;Acc:F6Z5P9]
ENSCJAG00000000024	KNOWN_BY_PROJECTION	protein_coding	ZNF805	chromosome:C_jacchus3.2.1:22:1:49145316:1	47801817	47816913	D	zinc finger protein 805 [Source:HGNC Symbol;Acc:HGNC:23272]
ENSCJAG00000018283	KNOWN	protein_coding	UBR7	chromosome:C_jacchus3.2.1:10:1:132174527:1	118805975	118826966	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033908}  [Source:UniProtKB/TrEMBL;Acc:F6PGP6]
ENSCJAG00000008377	NOVEL	pseudogene	ENSCJAG00000008377	chromosome:C_jacchus3.2.1:8:1:128169293:1	26716498	26719322	D	<no descrition>
ENSCJAG00000000026	KNOWN	protein_coding	ZNF547	chromosome:C_jacchus3.2.1:22:1:49145316:1	47845904	48053686	D	Callithrix jacchus zinc finger protein 543 (ZNF543), mRNA. [Source:RefSeq mRNA;Acc:NM_001270907]
ENSCJAG00000008344	KNOWN	protein_coding	CREB5	chromosome:C_jacchus3.2.1:8:1:128169293:1	26849118	27381049	R	Cyclic AMP-responsive element-binding protein 5 isoform delta {ECO:0000313|EMBL:JAB30461.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015385}  [Source:UniProtKB/TrEMBL;Acc:F7HFJ0]
ENSCJAG00000000030	NOVEL	pseudogene	ENSCJAG00000000030	chromosome:C_jacchus3.2.1:22:1:49145316:1	47941743	47942231	R	<no descrition>
ENSCJAG00000008374	NOVEL	pseudogene	ENSCJAG00000008374	chromosome:C_jacchus3.2.1:8:1:128169293:1	27054240	27054436	R	<no descrition>
ENSCJAG00000008339	NOVEL	protein_coding	ENSCJAG00000008339	chromosome:C_jacchus3.2.1:8:1:128169293:1	27400168	27400686	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015358}  [Source:UniProtKB/TrEMBL;Acc:F7DES1]
ENSCJAG00000008331	KNOWN	protein_coding	JAZF1	chromosome:C_jacchus3.2.1:8:1:128169293:1	27505414	27855850	D	Juxtaposed with another zinc finger protein 1 {ECO:0000313|EMBL:JAB05010.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015352}  [Source:UniProtKB/TrEMBL;Acc:F7DEV8]
ENSCJAG00000020638	KNOWN_BY_PROJECTION	protein_coding	TBP	chromosome:C_jacchus3.2.1:4:1:171630274:1	171579917	171600114	D	TATA box binding protein [Source:HGNC Symbol;Acc:HGNC:11588]
ENSCJAG00000000033	KNOWN_BY_PROJECTION	protein_coding	ZNF548	chromosome:C_jacchus3.2.1:22:1:49145316:1	47946172	47972445	D	zinc finger protein 548 [Source:HGNC Symbol;Acc:HGNC:26561]
ENSCJAG00000000035	KNOWN_BY_PROJECTION	protein_coding	ZNF749	chromosome:C_jacchus3.2.1:22:1:49145316:1	47988087	47991436	D	zinc finger protein 749 [Source:HGNC Symbol;Acc:HGNC:32783]
ENSCJAG00000000036	KNOWN_BY_PROJECTION	protein_coding	ZNF772	chromosome:C_jacchus3.2.1:22:1:49145316:1	48029423	48035373	R	zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
ENSCJAG00000008245	KNOWN_BY_PROJECTION	protein_coding	TAX1BP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	27856663	27955738	R	Tax1 (human T-cell leukemia virus type I) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11575]
ENSCJAG00000000037	KNOWN	protein_coding	ZNF549	chromosome:C_jacchus3.2.1:22:1:49145316:1	48039617	48384381	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000074}  [Source:UniProtKB/TrEMBL;Acc:F7GYU7]
ENSCJAG00000035045	NOVEL	pseudogene	ENSCJAG00000035045	chromosome:C_jacchus3.2.1:8:1:128169293:1	27980508	27980824	R	<no descrition>
ENSCJAG00000008235	NOVEL	protein_coding	ENSCJAG00000008235	chromosome:C_jacchus3.2.1:8:1:128169293:1	28029552	28030815	R	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU003389}  [Source:UniProtKB/TrEMBL;Acc:F7GUT0]
ENSCJAG00000008204	KNOWN_BY_PROJECTION	protein_coding	HIBADH	chromosome:C_jacchus3.2.1:8:1:128169293:1	28035434	28174349	D	3-hydroxyisobutyrate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4907]
ENSCJAG00000018265	KNOWN_BY_PROJECTION	protein_coding	BTBD7	chromosome:C_jacchus3.2.1:10:1:132174527:1	118840031	118949279	R	BTB (POZ) domain containing 7 [Source:HGNC Symbol;Acc:HGNC:18269]
ENSCJAG00000018332	KNOWN_BY_PROJECTION	protein_coding	UNC79	chromosome:C_jacchus3.2.1:10:1:132174527:1	118949716	119276487	D	unc-79 homolog (C. elegans) [Source:HGNC Symbol;Acc:HGNC:19966]
ENSCJAG00000008197	KNOWN	protein_coding	EVX1	chromosome:C_jacchus3.2.1:8:1:128169293:1	28443139	28447616	R	Even-skipped homeobox 1 (Predicted) {ECO:0000313|EMBL:ABZ80213.1}; Homeobox even-skipped homolog protein 1 {ECO:0000313|EMBL:JAB06316.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015148}  [Source:UniProtKB/TrEMBL;Acc:B0VXL0]
ENSCJAG00000008192	KNOWN_BY_PROJECTION	protein_coding	HOXA13	chromosome:C_jacchus3.2.1:8:1:128169293:1	28446831	28493607	D	homeobox A13 [Source:HGNC Symbol;Acc:HGNC:5102]
ENSCJAG00000000044	KNOWN_BY_PROJECTION	protein_coding	ZNF550	chromosome:C_jacchus3.2.1:22:1:49145316:1	48087278	48096946	R	zinc finger protein 550 [Source:HGNC Symbol;Acc:HGNC:28643]
ENSCJAG00000008187	KNOWN_BY_PROJECTION	protein_coding	HOXA11	chromosome:C_jacchus3.2.1:8:1:128169293:1	28510578	28514645	D	homeobox A11 [Source:HGNC Symbol;Acc:HGNC:5101]
ENSCJAG00000000045	KNOWN_BY_PROJECTION	protein_coding	ZNF416	chromosome:C_jacchus3.2.1:22:1:49145316:1	48117318	48125733	R	zinc finger protein 416 [Source:HGNC Symbol;Acc:HGNC:20645]
ENSCJAG00000018331	KNOWN_BY_PROJECTION	protein_coding	COX8C	chromosome:C_jacchus3.2.1:10:1:132174527:1	118960077	118961222	D	cytochrome c oxidase subunit VIIIC [Source:HGNC Symbol;Acc:HGNC:24382]
ENSCJAG00000000394	NOVEL	protein_coding	ENSCJAG00000000394	chromosome:C_jacchus3.2.1:22:1:49145316:1	48203063	48203890	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052053}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ6]
ENSCJAG00000008173	NOVEL	protein_coding	HOXA10	chromosome:C_jacchus3.2.1:8:1:128169293:1	28521716	28525434	D	Homeobox A10 isoform a (Predicted) {ECO:0000313|EMBL:ABZ80211.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015115}  [Source:UniProtKB/TrEMBL;Acc:B0VXK8]
ENSCJAG00000004875	NOVEL	pseudogene	ENSCJAG00000004875	chromosome:C_jacchus3.2.1:10:1:132174527:1	119205860	119206449	R	<no descrition>
ENSCJAG00000018401	NOVEL	pseudogene	ENSCJAG00000018401	chromosome:C_jacchus3.2.1:10:1:132174527:1	119321227	119321627	D	<no descrition>
ENSCJAG00000009634	KNOWN_BY_PROJECTION	protein_coding	PRIMA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	119347728	119406161	R	proline rich membrane anchor 1 [Source:HGNC Symbol;Acc:HGNC:18319]
ENSCJAG00000008096	KNOWN_BY_PROJECTION	protein_coding	HOXA9	chromosome:C_jacchus3.2.1:8:1:128169293:1	28530432	28533130	D	homeobox A9 [Source:HGNC Symbol;Acc:HGNC:5109]
ENSCJAG00000008095	KNOWN	protein_coding	HOXA7	chromosome:C_jacchus3.2.1:8:1:128169293:1	28543371	28546344	D	Homeobox A7 (Predicted) {ECO:0000313|EMBL:ABZ80210.1}; Homeobox protein Hox-A7 {ECO:0000313|EMBL:JAB40930.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014939}  [Source:UniProtKB/TrEMBL;Acc:B0VXK7]
ENSCJAG00000008082	KNOWN_BY_PROJECTION	protein_coding	HOXA6	chromosome:C_jacchus3.2.1:8:1:128169293:1	28552504	28555225	D	homeobox A6 [Source:HGNC Symbol;Acc:HGNC:5107]
ENSCJAG00000000381	NOVEL	protein_coding	ENSCJAG00000000381	chromosome:C_jacchus3.2.1:22:1:49145316:1	48276388	48494535	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000640}  [Source:UniProtKB/TrEMBL;Acc:F6QKM1]
ENSCJAG00000008058	KNOWN_BY_PROJECTION	protein_coding	HOXA4	chromosome:C_jacchus3.2.1:8:1:128169293:1	28557015	28573635	D	homeobox A4 [Source:HGNC Symbol;Acc:HGNC:5105]
ENSCJAG00000008046	NOVEL	protein_coding	HOXA3	chromosome:C_jacchus3.2.1:8:1:128169293:1	28575131	28598921	D	Homeobox A3 isoform a (Predicted) {ECO:0000313|EMBL:ABZ80207.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014874}  [Source:UniProtKB/TrEMBL;Acc:B0VXK4]
ENSCJAG00000008055	NOVEL	protein_coding	ENSCJAG00000008055	chromosome:C_jacchus3.2.1:8:1:128169293:1	28579283	28586786	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014878}  [Source:UniProtKB/TrEMBL;Acc:F7I4B2]
ENSCJAG00000008032	KNOWN	protein_coding	HOXA2	chromosome:C_jacchus3.2.1:8:1:128169293:1	28602318	28604733	D	Homeobox protein Hox-A2  [Source:UniProtKB/Swiss-Prot;Acc:B0VXK3]
ENSCJAG00000008024	NOVEL	protein_coding	HOXA1	chromosome:C_jacchus3.2.1:8:1:128169293:1	28609172	28755953	D	Homeobox A1 isoform a (Predicted) {ECO:0000313|EMBL:ABZ80205.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014822}  [Source:UniProtKB/TrEMBL;Acc:B0VXK2]
ENSCJAG00000009646	KNOWN	protein_coding	ASB2	chromosome:C_jacchus3.2.1:10:1:132174527:1	119447708	119578455	R	Ankyrin repeat and SOCS box protein 2 isoform 2 {ECO:0000313|EMBL:JAB02072.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042742}  [Source:UniProtKB/TrEMBL;Acc:F6VP36]
ENSCJAG00000007979	KNOWN	protein_coding	SKAP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	28707043	29059234	D	Src kinase-associated phosphoprotein 2 {ECO:0000313|EMBL:JAB07234.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027890}  [Source:UniProtKB/TrEMBL;Acc:F7FRH1]
ENSCJAG00000000391	NOVEL	pseudogene	ENSCJAG00000000391	chromosome:C_jacchus3.2.1:22:1:49145316:1	48413907	48414717	D	<no descrition>
ENSCJAG00000037136	NOVEL	protein_coding	ENSCJAG00000037136	chromosome:C_jacchus3.2.1:22:1:49145316:1	48418700	48423392	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052207}  [Source:UniProtKB/TrEMBL;Acc:F7ILJ7]
ENSCJAG00000033549	NOVEL	pseudogene	ENSCJAG00000033549	chromosome:C_jacchus3.2.1:22:1:49145316:1	48444122	48444446	R	<no descrition>
ENSCJAG00000000385	NOVEL	protein_coding	ENSCJAG00000000385	chromosome:C_jacchus3.2.1:22:1:49145316:1	48446844	48456399	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000649}  [Source:UniProtKB/TrEMBL;Acc:F6QBE0]
ENSCJAG00000033401	NOVEL	pseudogene	ENSCJAG00000033401	chromosome:C_jacchus3.2.1:22:1:49145316:1	48465373	48465502	R	<no descrition>
ENSCJAG00000009636	NOVEL	protein_coding	ENSCJAG00000009636	chromosome:C_jacchus3.2.1:10:1:132174527:1	119465513	119466875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052097}  [Source:UniProtKB/TrEMBL;Acc:F7IEL8]
ENSCJAG00000000378	KNOWN_BY_PROJECTION	protein_coding	C19orf18	chromosome:C_jacchus3.2.1:22:1:49145316:1	48501438	48509724	R	chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:HGNC:28642]
ENSCJAG00000009639	KNOWN_BY_PROJECTION	protein_coding	FAM181A	chromosome:C_jacchus3.2.1:10:1:132174527:1	119532651	119543614	D	family with sequence similarity 181, member A [Source:HGNC Symbol;Acc:HGNC:20491]
ENSCJAG00000000374	KNOWN	protein_coding	ZNF606	chromosome:C_jacchus3.2.1:22:1:49145316:1	48527395	48555420	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000631}; Zinc finger protein 606 {ECO:0000313|EMBL:JAB14955.1}  [Source:UniProtKB/TrEMBL;Acc:F6QL28]
ENSCJAG00000034509	NOVEL	pseudogene	ENSCJAG00000034509	chromosome:C_jacchus3.2.1:8:1:128169293:1	29079827	29080071	R	<no descrition>
ENSCJAG00000007959	KNOWN	protein_coding	SNX10	chromosome:C_jacchus3.2.1:8:1:128169293:1	29360611	29437477	R	Sorting nexin-10 isoform 1 {ECO:0000313|EMBL:JAB03091.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014736}  [Source:UniProtKB/TrEMBL;Acc:F7IN97]
ENSCJAG00000007958	NOVEL	protein_coding	ENSCJAG00000007958	chromosome:C_jacchus3.2.1:8:1:128169293:1	29499395	29501137	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014708}  [Source:UniProtKB/TrEMBL;Acc:F7IQM6]
ENSCJAG00000034533	NOVEL	protein_coding	ENSCJAG00000034533	chromosome:C_jacchus3.2.1:10:1:132174527:1	119615777	119629782	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049102}  [Source:UniProtKB/TrEMBL;Acc:F7CFQ3]
ENSCJAG00000007952	KNOWN_BY_PROJECTION	protein_coding	CBX3	chromosome:C_jacchus3.2.1:8:1:128169293:1	29512135	29526393	R	chromobox homolog 3 [Source:HGNC Symbol;Acc:HGNC:1553]
ENSCJAG00000009667	KNOWN_BY_PROJECTION	protein_coding	OTUB2	chromosome:C_jacchus3.2.1:10:1:132174527:1	119645793	119666234	D	OTU deubiquitinase, ubiquitin aldehyde binding 2 [Source:HGNC Symbol;Acc:HGNC:20351]
ENSCJAG00000007908	KNOWN	protein_coding	HNRNPA2B1	chromosome:C_jacchus3.2.1:8:1:128169293:1	29527081	29540686	D	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 {ECO:0000313|EMBL:JAB22683.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045636}  [Source:UniProtKB/TrEMBL;Acc:F6QNU5]
ENSCJAG00000009683	KNOWN	protein_coding	DDX24	chromosome:C_jacchus3.2.1:10:1:132174527:1	119670902	119696084	R	ATP-dependent RNA helicase DDX24 {ECO:0000313|EMBL:JAB08751.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017768}  [Source:UniProtKB/TrEMBL;Acc:F7I7H8]
ENSCJAG00000007897	KNOWN_BY_PROJECTION	protein_coding	NFE2L3	chromosome:C_jacchus3.2.1:8:1:128169293:1	29544680	29574684	R	nuclear factor, erythroid 2-like 3 [Source:HGNC Symbol;Acc:HGNC:7783]
ENSCJAG00000007892	NOVEL	pseudogene	ENSCJAG00000007892	chromosome:C_jacchus3.2.1:8:1:128169293:1	29812060	29812545	R	<no descrition>
ENSCJAG00000007888	KNOWN_BY_PROJECTION	protein_coding	NPVF	chromosome:C_jacchus3.2.1:8:1:128169293:1	30487290	30491487	D	neuropeptide VF precursor [Source:HGNC Symbol;Acc:HGNC:13782]
ENSCJAG00000000370	KNOWN	protein_coding	ZSCAN1	chromosome:C_jacchus3.2.1:22:1:49145316:1	48586091	48613192	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000614}  [Source:UniProtKB/TrEMBL;Acc:F6QLM8]
ENSCJAG00000000329	KNOWN	protein_coding	ZNF544	chromosome:C_jacchus3.2.1:22:1:49145316:1	48621814	48884068	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000548}  [Source:UniProtKB/TrEMBL;Acc:F7H2Z3]
ENSCJAG00000000262	NOVEL	protein_coding	ENSCJAG00000000262	chromosome:C_jacchus3.2.1:22:1:49145316:1	48629616	48630524	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000440}  [Source:UniProtKB/TrEMBL;Acc:F7FPA4]
ENSCJAG00000000348	KNOWN_BY_PROJECTION	protein_coding	ZSCAN18	chromosome:C_jacchus3.2.1:22:1:49145316:1	48648456	48658797	R	zinc finger and SCAN domain containing 18 [Source:HGNC Symbol;Acc:HGNC:21037]
ENSCJAG00000000347	KNOWN	protein_coding	ZNF329	chromosome:C_jacchus3.2.1:22:1:49145316:1	48672852	48733209	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000577}; Zinc finger protein 329 {ECO:0000313|EMBL:JAB12739.1}  [Source:UniProtKB/TrEMBL;Acc:F7GSR9]
ENSCJAG00000000304	KNOWN	protein_coding	RPS5	chromosome:C_jacchus3.2.1:22:1:49145316:1	48739772	48938871	D	40S ribosomal protein S5 {ECO:0000313|EMBL:JAB49249.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045735}  [Source:UniProtKB/TrEMBL;Acc:F6T2T8]
ENSCJAG00000009712	KNOWN_BY_PROJECTION	protein_coding	IFI27	chromosome:C_jacchus3.2.1:10:1:132174527:1	119727832	119737186	D	interferon, alpha-inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]
ENSCJAG00000007746	KNOWN_BY_PROJECTION	protein_coding	OSBPL3	chromosome:C_jacchus3.2.1:8:1:128169293:1	30675394	30885650	D	oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
ENSCJAG00000009718	KNOWN	protein_coding	IFI27L2	chromosome:C_jacchus3.2.1:10:1:132174527:1	119741353	119744030	R	Interferon alpha-inducible protein 27-like protein 2 {ECO:0000313|EMBL:JAB03226.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017789}  [Source:UniProtKB/TrEMBL;Acc:F7I565]
ENSCJAG00000009721	KNOWN_BY_PROJECTION	protein_coding	PPP4R4	chromosome:C_jacchus3.2.1:10:1:132174527:1	119801263	119921349	D	protein phosphatase 4, regulatory subunit 4 [Source:HGNC Symbol;Acc:HGNC:23788]
ENSCJAG00000000314	KNOWN_BY_PROJECTION	protein_coding	A1BG	chromosome:C_jacchus3.2.1:22:1:49145316:1	48888141	48895464	R	alpha-1-B glycoprotein [Source:HGNC Symbol;Acc:HGNC:5]
ENSCJAG00000000028	KNOWN_BY_PROJECTION	protein_coding	ZNF584	chromosome:C_jacchus3.2.1:22:1:49145316:1	48951188	48960118	D	zinc finger protein 584 [Source:HGNC Symbol;Acc:HGNC:27318]
ENSCJAG00000017270	NOVEL	protein_coding	ENSCJAG00000017270	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	516890	520121	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031816}  [Source:UniProtKB/TrEMBL;Acc:H9KX98]
ENSCJAG00000017310	KNOWN_BY_PROJECTION	protein_coding	MPO	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	521895	532315	R	myeloperoxidase [Source:HGNC Symbol;Acc:HGNC:7218]
ENSCJAG00000007718	KNOWN	protein_coding	DFNA5	chromosome:C_jacchus3.2.1:8:1:128169293:1	30914256	30976877	D	Non-syndromic hearing impairment protein 5 isoform a {ECO:0000313|EMBL:JAB23477.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014341}  [Source:UniProtKB/TrEMBL;Acc:F7IGG5]
ENSCJAG00000000268	KNOWN_BY_PROJECTION	protein_coding	SLC27A5	chromosome:C_jacchus3.2.1:22:1:49145316:1	48977844	49042727	R	solute carrier family 27 (fatty acid transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:10999]
ENSCJAG00000009761	KNOWN_BY_PROJECTION	protein_coding	SERPINA10	chromosome:C_jacchus3.2.1:10:1:132174527:1	119925164	119934208	R	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 [Source:HGNC Symbol;Acc:HGNC:15996]
ENSCJAG00000009769	KNOWN_BY_PROJECTION	protein_coding	SERPINA6	chromosome:C_jacchus3.2.1:10:1:132174527:1	119945313	119963095	R	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 [Source:HGNC Symbol;Acc:HGNC:1540]
ENSCJAG00000007689	KNOWN	protein_coding	MPP6	chromosome:C_jacchus3.2.1:8:1:128169293:1	30985345	31104001	R	MAGUK p55 subfamily member 6 {ECO:0000313|EMBL:JAB09493.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049812}  [Source:UniProtKB/TrEMBL;Acc:F6ZVZ4]
ENSCJAG00000000286	NOVEL	protein_coding	ENSCJAG00000000286	chromosome:C_jacchus3.2.1:22:1:49145316:1	48995675	49016532	D	<no descrition>
ENSCJAG00000007671	KNOWN	protein_coding	NPY	chromosome:C_jacchus3.2.1:8:1:128169293:1	31381539	31389096	R	Pro-neuropeptide Y preproprotein {ECO:0000313|EMBL:JAB20790.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014232}  [Source:UniProtKB/TrEMBL;Acc:F7HVB6]
ENSCJAG00000009779	KNOWN_BY_PROJECTION	protein_coding	SERPINA2	chromosome:C_jacchus3.2.1:10:1:132174527:1	119987411	119989846	R	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:8985]
ENSCJAG00000007603	KNOWN	protein_coding	FAM221A	chromosome:C_jacchus3.2.1:8:1:128169293:1	31839160	32057952	R	Protein FAM221A isoform 1 {ECO:0000313|EMBL:JAB05328.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045646}  [Source:UniProtKB/TrEMBL;Acc:F6QDD8]
ENSCJAG00000007625	KNOWN_BY_PROJECTION	protein_coding	STK31	chromosome:C_jacchus3.2.1:8:1:128169293:1	31857425	32026035	R	serine/threonine kinase 31 [Source:HGNC Symbol;Acc:HGNC:11407]
ENSCJAG00000009782	KNOWN_BY_PROJECTION	protein_coding	SERPINA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	120002491	120015150	R	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 [Source:HGNC Symbol;Acc:HGNC:8941]
ENSCJAG00000007661	NOVEL	pseudogene	ENSCJAG00000007661	chromosome:C_jacchus3.2.1:8:1:128169293:1	31908590	31909309	R	<no descrition>
ENSCJAG00000007597	NOVEL	protein_coding	ENSCJAG00000007597	chromosome:C_jacchus3.2.1:8:1:128169293:1	32070377	32071962	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014099}  [Source:UniProtKB/TrEMBL;Acc:F7HKA2]
ENSCJAG00000007595	KNOWN	protein_coding	CCDC126	chromosome:C_jacchus3.2.1:8:1:128169293:1	32109952	32151081	R	Coiled-coil domain-containing protein 126 {ECO:0000313|EMBL:JAB06405.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014090}  [Source:UniProtKB/TrEMBL;Acc:F7HKB9]
ENSCJAG00000007587	NOVEL	protein_coding	ENSCJAG00000007587	chromosome:C_jacchus3.2.1:8:1:128169293:1	32154550	32156408	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014085}  [Source:UniProtKB/TrEMBL;Acc:F7HQT9]
ENSCJAG00000001509	KNOWN_BY_PROJECTION	protein_coding	TRA2A	chromosome:C_jacchus3.2.1:8:1:128169293:1	32232212	32250136	D	transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:16645]
ENSCJAG00000001499	KNOWN_BY_PROJECTION	protein_coding	IGF2BP3	chromosome:C_jacchus3.2.1:8:1:128169293:1	32290858	32449972	D	insulin-like growth factor 2 mRNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:28868]
ENSCJAG00000000273	KNOWN_BY_PROJECTION	protein_coding	ZNF446	chromosome:C_jacchus3.2.1:22:1:49145316:1	49019439	49024645	D	zinc finger protein 446 [Source:HGNC Symbol;Acc:HGNC:21036]
ENSCJAG00000001497	KNOWN	protein_coding	MALSU1	chromosome:C_jacchus3.2.1:8:1:128169293:1	32450323	32463614	R	Mitochondrial assembly of ribosomal large subunit protein 1 {ECO:0000313|EMBL:JAB42936.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002664}  [Source:UniProtKB/TrEMBL;Acc:F7I240]
ENSCJAG00000000240	KNOWN	protein_coding	TRIM28	chromosome:C_jacchus3.2.1:22:1:49145316:1	49066447	49072918	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000424}  [Source:UniProtKB/TrEMBL;Acc:F7G1G3]
ENSCJAG00000034936	NOVEL	protein_coding	ENSCJAG00000034936	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	555599	560723	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031976}  [Source:UniProtKB/TrEMBL;Acc:H9KXA2]
ENSCJAG00000011183	KNOWN_BY_PROJECTION	protein_coding	B4GALT7	scaffold:C_jacchus3.2.1:GL284852.1:1:101615:1	43025	46352	R	xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 [Source:HGNC Symbol;Acc:HGNC:930]
ENSCJAG00000001480	KNOWN	protein_coding	GPNMB	chromosome:C_jacchus3.2.1:8:1:128169293:1	32486844	32518363	R	Transmembrane glycoprotein NMB isoform a {ECO:0000313|EMBL:JAB04735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002659}  [Source:UniProtKB/TrEMBL;Acc:F7I265]
ENSCJAG00000009806	KNOWN_BY_PROJECTION	protein_coding	SERPINA11	chromosome:C_jacchus3.2.1:10:1:132174527:1	120069899	120082907	R	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 [Source:HGNC Symbol;Acc:HGNC:19193]
ENSCJAG00000009809	KNOWN_BY_PROJECTION	protein_coding	SERPINA9	chromosome:C_jacchus3.2.1:10:1:132174527:1	120092971	120099131	R	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 [Source:HGNC Symbol;Acc:HGNC:15995]
ENSCJAG00000033267	NOVEL	protein_coding	ENSCJAG00000033267	scaffold:C_jacchus3.2.1:GL288742.1:1:14012:1	5756	6962	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050677}  [Source:UniProtKB/TrEMBL;Acc:H9KYH5]
ENSCJAG00000009820	KNOWN_BY_PROJECTION	protein_coding	SERPINA12	chromosome:C_jacchus3.2.1:10:1:132174527:1	120117782	120134628	R	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 [Source:HGNC Symbol;Acc:HGNC:18359]
ENSCJAG00000009827	KNOWN_BY_PROJECTION	protein_coding	SERPINA4	chromosome:C_jacchus3.2.1:10:1:132174527:1	120181456	120187852	D	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 [Source:HGNC Symbol;Acc:HGNC:8948]
ENSCJAG00000009829	KNOWN_BY_PROJECTION	protein_coding	SERPINA5	chromosome:C_jacchus3.2.1:10:1:132174527:1	120200951	120221281	D	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 [Source:HGNC Symbol;Acc:HGNC:8723]
ENSCJAG00000000234	KNOWN_BY_PROJECTION	protein_coding	CHMP2A	chromosome:C_jacchus3.2.1:22:1:49145316:1	49073707	49077147	R	charged multivesicular body protein 2A [Source:HGNC Symbol;Acc:HGNC:30216]
ENSCJAG00000009846	NOVEL	protein_coding	ENSCJAG00000009846	chromosome:C_jacchus3.2.1:10:1:132174527:1	120250254	120269765	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018067}  [Source:UniProtKB/TrEMBL;Acc:F7GA13]
ENSCJAG00000000223	KNOWN	protein_coding	UBE2M	chromosome:C_jacchus3.2.1:22:1:49145316:1	49077771	49080992	R	NEDD8-conjugating enzyme Ubc12 {ECO:0000313|EMBL:JAB21285.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049103}  [Source:UniProtKB/TrEMBL;Acc:F7CFP7]
ENSCJAG00000001466	KNOWN	protein_coding	NUPL2	chromosome:C_jacchus3.2.1:8:1:128169293:1	32584539	32602849	R	Nucleoporin-like protein 2 {ECO:0000313|EMBL:JAB06682.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042152}  [Source:UniProtKB/TrEMBL;Acc:F6V8D9]
ENSCJAG00000009855	NOVEL	protein_coding	ENSCJAG00000009855	chromosome:C_jacchus3.2.1:10:1:132174527:1	120277160	120284454	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018088}  [Source:UniProtKB/TrEMBL;Acc:F7FJL4]
ENSCJAG00000009866	KNOWN_BY_PROJECTION	protein_coding	GSC	chromosome:C_jacchus3.2.1:10:1:132174527:1	120398654	120400604	R	goosecoid homeobox [Source:HGNC Symbol;Acc:HGNC:4612]
ENSCJAG00000001422	KNOWN_BY_PROJECTION	protein_coding	KLHL7	chromosome:C_jacchus3.2.1:8:1:128169293:1	32609842	32681333	R	kelch-like family member 7 [Source:HGNC Symbol;Acc:HGNC:15646]
ENSCJAG00000006225	KNOWN	protein_coding	DICER1	chromosome:C_jacchus3.2.1:10:1:132174527:1	120706288	120780481	R	Endoribonuclease Dicer isoform 1 {ECO:0000313|EMBL:JAB03514.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049435}  [Source:UniProtKB/TrEMBL;Acc:F7BYR6]
ENSCJAG00000032899	NOVEL	protein_coding	ENSCJAG00000032899	chromosome:C_jacchus3.2.1:8:1:128169293:1	32710160	32711291	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043585}  [Source:UniProtKB/TrEMBL;Acc:F7ILZ7]
ENSCJAG00000032091	NOVEL	protein_coding	ENSCJAG00000032091	chromosome:C_jacchus3.2.1:8:1:128169293:1	32720515	32720936	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046916}  [Source:UniProtKB/TrEMBL;Acc:F7IAJ0]
ENSCJAG00000000218	KNOWN	protein_coding	MZF1	chromosome:C_jacchus3.2.1:22:1:49145316:1	49083958	49094945	R	Myeloid zinc finger 1 isoform 1 {ECO:0000313|EMBL:JAB04552.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000360}  [Source:UniProtKB/TrEMBL;Acc:F7HIW5]
ENSCJAG00000001415	KNOWN_BY_PROJECTION	protein_coding	FAM126A	chromosome:C_jacchus3.2.1:8:1:128169293:1	32778371	32857970	D	family with sequence similarity 126, member A [Source:HGNC Symbol;Acc:HGNC:24587]
ENSCJAG00000032018	KNOWN_BY_PROJECTION	protein_coding	CENPBD1	chromosome:C_jacchus3.2.1:22:1:49145316:1	49107724	49113479	D	CENPB DNA-binding domains containing 1 [Source:HGNC Symbol;Acc:HGNC:28272]
ENSCJAG00000034998	NOVEL	protein_coding	ENSCJAG00000034998	chromosome:C_jacchus3.2.1:8:1:128169293:1	32876083	32876670	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043270}  [Source:UniProtKB/TrEMBL;Acc:F7I833]
ENSCJAG00000018434	KNOWN_BY_PROJECTION	protein_coding	LARP4B	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	1333515	1344248	R	La ribonucleoprotein domain family, member 4B [Source:HGNC Symbol;Acc:HGNC:28987]
ENSCJAG00000001412	KNOWN	protein_coding	TOMM7	chromosome:C_jacchus3.2.1:8:1:128169293:1	32979380	32989891	D	Mitochondrial import receptor subunit TOM7 homolog {ECO:0000313|EMBL:JAB23883.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002497}  [Source:UniProtKB/TrEMBL;Acc:F7HQC3]
ENSCJAG00000033078	NOVEL	protein_coding	ENSCJAG00000033078	scaffold:C_jacchus3.2.1:GL288481.1:1:21741:1	5080	6608	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051451}  [Source:UniProtKB/TrEMBL;Acc:H9KYJ6]
ENSCJAG00000017596	NOVEL	protein_coding	ENSCJAG00000017596	scaffold:C_jacchus3.2.1:ACFV01178005.1:1:23815:1	4844	21615	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032417}  [Source:UniProtKB/TrEMBL;Acc:H9KXC1]
ENSCJAG00000033373	NOVEL	pseudogene	ENSCJAG00000033373	scaffold:C_jacchus3.2.1:GL286972.1:1:5922:1	474	799	R	<no descrition>
ENSCJAG00000010637	NOVEL	pseudogene	ENSCJAG00000010637	scaffold:C_jacchus3.2.1:GL289184.1:1:9351:1	1139	2016	R	<no descrition>
ENSCJAG00000001400	KNOWN	protein_coding	IL6	chromosome:C_jacchus3.2.1:8:1:128169293:1	33085494	33090695	R	Callithrix jacchus interleukin 6 (interferon, beta 2) (IL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001267771]
ENSCJAG00000021223	NOVEL	pseudogene	ENSCJAG00000021223	chromosome:C_jacchus3.2.1:1:1:210400635:1	608880	609867	D	<no descrition>
ENSCJAG00000031552	NOVEL	protein_coding	ENSCJAG00000031552	chromosome:C_jacchus3.2.1:1:1:210400635:1	696608	697572	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015019}  [Source:UniProtKB/TrEMBL;Acc:F7GIA0]
ENSCJAG00000003187	KNOWN_BY_PROJECTION	protein_coding	SLITRK6	chromosome:C_jacchus3.2.1:1:1:210400635:1	975674	983259	R	SLIT and NTRK-like family, member 6 [Source:HGNC Symbol;Acc:HGNC:23503]
ENSCJAG00000001396	NOVEL	protein_coding	ENSCJAG00000001396	chromosome:C_jacchus3.2.1:8:1:128169293:1	33090225	33092438	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002467}  [Source:UniProtKB/TrEMBL;Acc:F7HXM4]
ENSCJAG00000003189	KNOWN_BY_PROJECTION	protein_coding	SLITRK5	chromosome:C_jacchus3.2.1:1:1:210400635:1	2861539	2868512	D	SLIT and NTRK-like family, member 5 [Source:HGNC Symbol;Acc:HGNC:20295]
ENSCJAG00000001374	NOVEL	protein_coding	ENSCJAG00000001374	chromosome:C_jacchus3.2.1:8:1:128169293:1	33410036	33601567	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002427}  [Source:UniProtKB/TrEMBL;Acc:F7I2A8]
ENSCJAG00000032597	NOVEL	protein_coding	ENSCJAG00000032597	chromosome:C_jacchus3.2.1:1:1:210400635:1	4452347	4453248	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051222}  [Source:UniProtKB/TrEMBL;Acc:F6VLH8]
ENSCJAG00000003196	NOVEL	pseudogene	ENSCJAG00000003196	chromosome:C_jacchus3.2.1:1:1:210400635:1	4620727	4621280	R	<no descrition>
ENSCJAG00000003198	NOVEL	pseudogene	ENSCJAG00000003198	chromosome:C_jacchus3.2.1:1:1:210400635:1	6420689	6421608	R	<no descrition>
ENSCJAG00000036784	KNOWN_BY_PROJECTION	protein_coding	RAPGEF5	chromosome:C_jacchus3.2.1:8:1:128169293:1	33599846	33671761	D	Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
ENSCJAG00000003206	NOVEL	protein_coding	ENSCJAG00000003206	chromosome:C_jacchus3.2.1:1:1:210400635:1	6511186	6518416	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005847}  [Source:UniProtKB/TrEMBL;Acc:F7HRG2]
ENSCJAG00000018215	NOVEL	pseudogene	ENSCJAG00000018215	scaffold:C_jacchus3.2.1:GL289200.1:1:10130:1	8140	8968	D	<no descrition>
ENSCJAG00000006324	KNOWN_BY_PROJECTION	protein_coding	CLMN	chromosome:C_jacchus3.2.1:10:1:132174527:1	120804255	120838505	R	calmin (calponin-like, transmembrane) [Source:HGNC Symbol;Acc:HGNC:19972]
ENSCJAG00000003211	KNOWN_BY_PROJECTION	protein_coding	GPC5	chromosome:C_jacchus3.2.1:1:1:210400635:1	6871553	6902790	D	glypican 5 [Source:HGNC Symbol;Acc:HGNC:4453]
ENSCJAG00000003223	NOVEL	protein_coding	ENSCJAG00000003223	chromosome:C_jacchus3.2.1:1:1:210400635:1	8553222	8554501	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005872}  [Source:UniProtKB/TrEMBL;Acc:F7HKQ5]
ENSCJAG00000003215	KNOWN_BY_PROJECTION	protein_coding	GPC6	chromosome:C_jacchus3.2.1:1:1:210400635:1	8930391	9527184	D	glypican 6 [Source:HGNC Symbol;Acc:HGNC:4454]
ENSCJAG00000001351	KNOWN_BY_PROJECTION	protein_coding	CDCA7L	chromosome:C_jacchus3.2.1:8:1:128169293:1	33865998	33904067	D	cell division cycle associated 7-like [Source:HGNC Symbol;Acc:HGNC:30777]
ENSCJAG00000003225	KNOWN_BY_PROJECTION	protein_coding	DCT	chromosome:C_jacchus3.2.1:1:1:210400635:1	9566630	9609107	R	dopachrome tautomerase [Source:HGNC Symbol;Acc:HGNC:2709]
ENSCJAG00000006351	KNOWN	protein_coding	SYNE3	chromosome:C_jacchus3.2.1:10:1:132174527:1	121039703	121092493	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011744}  [Source:UniProtKB/TrEMBL;Acc:F7GCF1]
ENSCJAG00000001301	KNOWN_BY_PROJECTION	protein_coding	DNAH11	chromosome:C_jacchus3.2.1:8:1:128169293:1	33904847	34318381	R	dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
ENSCJAG00000006375	KNOWN	protein_coding	ENSCJAG00000006375	chromosome:C_jacchus3.2.1:10:1:132174527:1	121155213	121164983	D	Glutaredoxin-related protein 5, mitochondrial {ECO:0000313|EMBL:JAB02360.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011751}  [Source:UniProtKB/TrEMBL;Acc:F7G0E5]
ENSCJAG00000003252	KNOWN	protein_coding	TGDS	chromosome:C_jacchus3.2.1:1:1:210400635:1	9694345	9713318	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005949}; dTDP-D-glucose 4,6-dehydratase {ECO:0000313|EMBL:JAB15008.1}  [Source:UniProtKB/TrEMBL;Acc:F7IED0]
ENSCJAG00000006378	NOVEL	protein_coding	ENSCJAG00000006378	chromosome:C_jacchus3.2.1:10:1:132174527:1	121299942	121309456	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011773}  [Source:UniProtKB/TrEMBL;Acc:F7FM49]
ENSCJAG00000006387	KNOWN_BY_PROJECTION	protein_coding	TCL1B	chromosome:C_jacchus3.2.1:10:1:132174527:1	121322541	121327366	D	T-cell leukemia/lymphoma 1B [Source:HGNC Symbol;Acc:HGNC:11649]
ENSCJAG00000001282	KNOWN	protein_coding	SP4	chromosome:C_jacchus3.2.1:8:1:128169293:1	34374107	34474684	R	Transcription factor Sp4 {ECO:0000313|EMBL:JAB28547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002271}  [Source:UniProtKB/TrEMBL;Acc:F7HQH5]
ENSCJAG00000006391	KNOWN_BY_PROJECTION	protein_coding	TCL1A	chromosome:C_jacchus3.2.1:10:1:132174527:1	121349523	121352123	R	T-cell leukemia/lymphoma 1A [Source:HGNC Symbol;Acc:HGNC:11648]
ENSCJAG00000006399	KNOWN_BY_PROJECTION	protein_coding	BDKRB2	chromosome:C_jacchus3.2.1:10:1:132174527:1	121879515	121917120	D	bradykinin receptor B2 [Source:HGNC Symbol;Acc:HGNC:1030]
ENSCJAG00000022942	NOVEL	pseudogene	ENSCJAG00000022942	chromosome:C_jacchus3.2.1:10:1:132174527:1	121943898	121944975	D	<no descrition>
ENSCJAG00000001272	NOVEL	protein_coding	ENSCJAG00000001272	chromosome:C_jacchus3.2.1:8:1:128169293:1	34801952	34802406	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002243}  [Source:UniProtKB/TrEMBL;Acc:F7HVE4]
ENSCJAG00000001265	NOVEL	pseudogene	ENSCJAG00000001265	chromosome:C_jacchus3.2.1:8:1:128169293:1	34853672	34854089	D	<no descrition>
ENSCJAG00000001245	KNOWN_BY_PROJECTION	protein_coding	SP8	chromosome:C_jacchus3.2.1:8:1:128169293:1	35158583	35163451	D	Sp8 transcription factor [Source:HGNC Symbol;Acc:HGNC:19196]
ENSCJAG00000006410	KNOWN_BY_PROJECTION	protein_coding	ATG2B	chromosome:C_jacchus3.2.1:10:1:132174527:1	121967114	122045119	R	autophagy related 2B [Source:HGNC Symbol;Acc:HGNC:20187]
ENSCJAG00000001243	NOVEL	protein_coding	ENSCJAG00000001243	chromosome:C_jacchus3.2.1:8:1:128169293:1	35187419	35189663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043012}  [Source:UniProtKB/TrEMBL;Acc:F7HYT2]
ENSCJAG00000003277	KNOWN	protein_coding	GPR180	chromosome:C_jacchus3.2.1:1:1:210400635:1	9720100	9748080	D	Integral membrane protein GPR180 {ECO:0000313|EMBL:JAB03715.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005986}  [Source:UniProtKB/TrEMBL;Acc:F7I9N2]
ENSCJAG00000001194	KNOWN_BY_PROJECTION	protein_coding	ABCB5	chromosome:C_jacchus3.2.1:8:1:128169293:1	35190268	35309010	R	ATP-binding cassette, sub-family B (MDR/TAP), member 5 [Source:HGNC Symbol;Acc:HGNC:46]
ENSCJAG00000006459	KNOWN	protein_coding	GSKIP	chromosome:C_jacchus3.2.1:10:1:132174527:1	122045662	122070321	D	GSK3-beta interaction protein {ECO:0000313|EMBL:JAB01973.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011901}  [Source:UniProtKB/TrEMBL;Acc:F7GLP4]
ENSCJAG00000003296	KNOWN_BY_PROJECTION	protein_coding	SOX21	chromosome:C_jacchus3.2.1:1:1:210400635:1	9830611	9831441	R	SRY (sex determining region Y)-box 21 [Source:HGNC Symbol;Acc:HGNC:11197]
ENSCJAG00000006462	KNOWN_BY_PROJECTION	protein_coding	AK7	chromosome:C_jacchus3.2.1:10:1:132174527:1	122075482	122167910	D	adenylate kinase 7 [Source:HGNC Symbol;Acc:HGNC:20091]
ENSCJAG00000001171	KNOWN_BY_PROJECTION	protein_coding	ITGB8	chromosome:C_jacchus3.2.1:8:1:128169293:1	35529767	35605520	R	integrin, beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]
ENSCJAG00000001164	KNOWN_BY_PROJECTION	protein_coding	MACC1	chromosome:C_jacchus3.2.1:8:1:128169293:1	35788613	35914837	D	metastasis associated in colon cancer 1 [Source:HGNC Symbol;Acc:HGNC:30215]
ENSCJAG00000001161	KNOWN_BY_PROJECTION	protein_coding	TMEM196	chromosome:C_jacchus3.2.1:8:1:128169293:1	36181787	36236733	D	transmembrane protein 196 [Source:HGNC Symbol;Acc:HGNC:22431]
ENSCJAG00000001148	KNOWN_BY_PROJECTION	protein_coding	TWISTNB	chromosome:C_jacchus3.2.1:8:1:128169293:1	36246573	36257443	D	TWIST neighbor [Source:HGNC Symbol;Acc:HGNC:18027]
ENSCJAG00000001144	NOVEL	pseudogene	ENSCJAG00000001144	chromosome:C_jacchus3.2.1:8:1:128169293:1	36946846	36947334	D	<no descrition>
ENSCJAG00000003300	KNOWN_BY_PROJECTION	protein_coding	ABCC4	chromosome:C_jacchus3.2.1:1:1:210400635:1	10139179	10431989	R	ATP-binding cassette, sub-family C (CFTR/MRP), member 4 [Source:HGNC Symbol;Acc:HGNC:55]
ENSCJAG00000001076	KNOWN_BY_PROJECTION	protein_coding	HDAC9	chromosome:C_jacchus3.2.1:8:1:128169293:1	37101748	37607332	R	histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
ENSCJAG00000006512	KNOWN_BY_PROJECTION	protein_coding	PAPOLA	chromosome:C_jacchus3.2.1:10:1:132174527:1	122182784	122246192	D	poly(A) polymerase alpha [Source:HGNC Symbol;Acc:HGNC:14981]
ENSCJAG00000001140	NOVEL	protein_coding	ENSCJAG00000001140	chromosome:C_jacchus3.2.1:8:1:128169293:1	37378020	37379889	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001953}  [Source:UniProtKB/TrEMBL;Acc:F6X335]
ENSCJAG00000001040	KNOWN	protein_coding	SNX13	chromosome:C_jacchus3.2.1:8:1:128169293:1	38224113	38370455	D	Sorting nexin-13 {ECO:0000313|EMBL:JAB08440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042491}  [Source:UniProtKB/TrEMBL;Acc:F6Z6T9]
ENSCJAG00000006619	KNOWN	protein_coding	VRK1	chromosome:C_jacchus3.2.1:10:1:132174527:1	122497040	122583993	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012374}  [Source:UniProtKB/TrEMBL;Acc:F7H395]
ENSCJAG00000003357	NOVEL	pseudogene	ENSCJAG00000003357	chromosome:C_jacchus3.2.1:1:1:210400635:1	10481181	10482235	R	<no descrition>
ENSCJAG00000003358	NOVEL	pseudogene	ENSCJAG00000003358	chromosome:C_jacchus3.2.1:1:1:210400635:1	10482970	10483433	D	<no descrition>
ENSCJAG00000003359	KNOWN	protein_coding	CLDN10	chromosome:C_jacchus3.2.1:1:1:210400635:1	10691346	10714914	D	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:F7FY51]
ENSCJAG00000001039	NOVEL	protein_coding	ENSCJAG00000001039	chromosome:C_jacchus3.2.1:8:1:128169293:1	38682431	38683429	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001770}  [Source:UniProtKB/TrEMBL;Acc:F6X3F5]
ENSCJAG00000001029	KNOWN	protein_coding	AHR	chromosome:C_jacchus3.2.1:8:1:128169293:1	38802576	38846659	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001767}  [Source:UniProtKB/TrEMBL;Acc:F6X3Y4]
ENSCJAG00000003362	NOVEL	protein_coding	ENSCJAG00000003362	chromosome:C_jacchus3.2.1:1:1:210400635:1	10717713	10777791	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006165}  [Source:UniProtKB/TrEMBL;Acc:F7E064]
ENSCJAG00000000990	KNOWN	protein_coding	TSPAN13	chromosome:C_jacchus3.2.1:8:1:128169293:1	39195616	39427061	R	Tetraspanin-13 {ECO:0000313|EMBL:JAB03156.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047129}  [Source:UniProtKB/TrEMBL;Acc:F7HX26]
ENSCJAG00000001020	KNOWN	protein_coding	AGR3	chromosome:C_jacchus3.2.1:8:1:128169293:1	39297352	39317558	D	Anterior gradient protein 3 homolog {ECO:0000313|EMBL:JAB02472.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001737}  [Source:UniProtKB/TrEMBL;Acc:F6XSD4]
ENSCJAG00000006702	NOVEL	protein_coding	ENSCJAG00000006702	chromosome:C_jacchus3.2.1:10:1:132174527:1	122656183	122658693	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012380}  [Source:UniProtKB/TrEMBL;Acc:F7GY75]
ENSCJAG00000006704	NOVEL	pseudogene	ENSCJAG00000006704	chromosome:C_jacchus3.2.1:10:1:132174527:1	122937908	122938275	D	<no descrition>
ENSCJAG00000006706	NOVEL	protein_coding	ENSCJAG00000006706	chromosome:C_jacchus3.2.1:10:1:132174527:1	123398298	123411612	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012384}  [Source:UniProtKB/TrEMBL;Acc:F7GY67]
ENSCJAG00000000997	KNOWN_BY_PROJECTION	protein_coding	AGR2	chromosome:C_jacchus3.2.1:8:1:128169293:1	39372246	39387346	D	anterior gradient 2 [Source:HGNC Symbol;Acc:HGNC:328]
ENSCJAG00000034696	NOVEL	protein_coding	ENSCJAG00000034696	chromosome:C_jacchus3.2.1:10:1:132174527:1	124635309	124636469	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051245}  [Source:UniProtKB/TrEMBL;Acc:F6VKQ4]
ENSCJAG00000006713	KNOWN_BY_PROJECTION	protein_coding	BCL11B	chromosome:C_jacchus3.2.1:10:1:132174527:1	125001774	125097977	R	B-cell CLL/lymphoma 11B (zinc finger protein) [Source:HGNC Symbol;Acc:HGNC:13222]
ENSCJAG00000005302	NOVEL	pseudogene	ENSCJAG00000005302	chromosome:C_jacchus3.2.1:8:1:128169293:1	39449726	39450252	D	<no descrition>
ENSCJAG00000006717	KNOWN	protein_coding	SETD3	chromosome:C_jacchus3.2.1:10:1:132174527:1	125228127	125313523	R	Histone-lysine N-methyltransferase setd3  [Source:UniProtKB/Swiss-Prot;Acc:B0VX69]
ENSCJAG00000001435	NOVEL	pseudogene	ENSCJAG00000001435	chromosome:C_jacchus3.2.1:8:1:128169293:1	39454177	39454672	R	<no descrition>
ENSCJAG00000006738	NOVEL	protein_coding	MA_R322_JSMB1F6EF	chromosome:C_jacchus3.2.1:10:1:132174527:1	125314025	125356931	D	Cyclin K (Predicted) {ECO:0000313|EMBL:ACA35061.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012473}  [Source:UniProtKB/TrEMBL;Acc:B0VX68]
ENSCJAG00000006757	KNOWN_BY_PROJECTION	protein_coding	CCDC85C	chromosome:C_jacchus3.2.1:10:1:132174527:1	125349131	125440082	R	coiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]
ENSCJAG00000003402	KNOWN	protein_coding	DNAJC3	chromosome:C_jacchus3.2.1:1:1:210400635:1	10813879	10894552	D	DnaJ homolog subfamily C member 3 {ECO:0000313|EMBL:JAB03230.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006219}  [Source:UniProtKB/TrEMBL;Acc:F7H6J7]
ENSCJAG00000000954	KNOWN	protein_coding	BZW2	chromosome:C_jacchus3.2.1:8:1:128169293:1	39470907	39537365	R	Basic leucine zipper and W2 domain-containing protein 2 {ECO:0000313|EMBL:JAB05264.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001686}  [Source:UniProtKB/TrEMBL;Acc:F7BX11]
ENSCJAG00000006767	KNOWN_BY_PROJECTION	protein_coding	HHIPL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	125483672	125513451	D	HHIP-like 1 [Source:HGNC Symbol;Acc:HGNC:19710]
ENSCJAG00000006798	KNOWN_BY_PROJECTION	protein_coding	CYP46A1	chromosome:C_jacchus3.2.1:10:1:132174527:1	125522170	125565551	D	cytochrome P450, family 46, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2641]
ENSCJAG00000000950	KNOWN	protein_coding	ANKMY2	chromosome:C_jacchus3.2.1:8:1:128169293:1	39537727	39586905	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001623}  [Source:UniProtKB/TrEMBL;Acc:F7CTM5]
ENSCJAG00000003433	KNOWN_BY_PROJECTION	protein_coding	UGGT2	chromosome:C_jacchus3.2.1:1:1:210400635:1	10904231	11148487	R	UDP-glucose glycoprotein glucosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:15664]
ENSCJAG00000000948	KNOWN_BY_PROJECTION	protein_coding	LRRC72	chromosome:C_jacchus3.2.1:8:1:128169293:1	39606876	39675657	R	leucine rich repeat containing 72 [Source:HGNC Symbol;Acc:HGNC:42972]
ENSCJAG00000000941	KNOWN	protein_coding	SOSTDC1	chromosome:C_jacchus3.2.1:8:1:128169293:1	39728690	39733212	D	Sclerostin domain-containing protein 1 {ECO:0000313|EMBL:JAB05280.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001607}  [Source:UniProtKB/TrEMBL;Acc:F6USQ7]
ENSCJAG00000000937	KNOWN	protein_coding	ISPD	chromosome:C_jacchus3.2.1:8:1:128169293:1	39778312	40127346	D	Isoprenoid synthase domain-containing protein isoform a {ECO:0000313|EMBL:JAB08331.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001597}  [Source:UniProtKB/TrEMBL;Acc:F6YEP4]
ENSCJAG00000000930	KNOWN_BY_PROJECTION	protein_coding	MEOX2	chromosome:C_jacchus3.2.1:8:1:128169293:1	40545260	40619194	D	mesenchyme homeobox 2 [Source:HGNC Symbol;Acc:HGNC:7014]
ENSCJAG00000000927	KNOWN_BY_PROJECTION	protein_coding	AGMO	chromosome:C_jacchus3.2.1:8:1:128169293:1	40678491	41038153	D	alkylglycerol monooxygenase [Source:HGNC Symbol;Acc:HGNC:33784]
ENSCJAG00000000897	KNOWN	protein_coding	DGKB	chromosome:C_jacchus3.2.1:8:1:128169293:1	41326150	42078989	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001557}  [Source:UniProtKB/TrEMBL;Acc:F6ZG32]
ENSCJAG00000006842	KNOWN	protein_coding	EML1	chromosome:C_jacchus3.2.1:10:1:132174527:1	125612480	125804594	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012783}  [Source:UniProtKB/TrEMBL;Acc:F6R5I5]
ENSCJAG00000003482	NOVEL	pseudogene	ENSCJAG00000003482	chromosome:C_jacchus3.2.1:1:1:210400635:1	10911785	10912089	R	<no descrition>
ENSCJAG00000022870	KNOWN_BY_PROJECTION	protein_coding	OXGR1	chromosome:C_jacchus3.2.1:1:1:210400635:1	12096244	12105837	R	oxoglutarate (alpha-ketoglutarate) receptor 1 [Source:HGNC Symbol;Acc:HGNC:4531]
ENSCJAG00000004294	KNOWN	protein_coding	MBNL2	chromosome:C_jacchus3.2.1:1:1:210400635:1	12252732	12502104	D	Muscleblind-like protein 2 isoform 3 {ECO:0000313|EMBL:JAB11020.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048547}  [Source:UniProtKB/TrEMBL;Acc:F7FMK1]
ENSCJAG00000033775	NOVEL	protein_coding	ENSCJAG00000033775	chromosome:C_jacchus3.2.1:10:1:132174527:1	125840994	125841735	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042720}  [Source:UniProtKB/TrEMBL;Acc:F6WSS5]
ENSCJAG00000000857	KNOWN	protein_coding	ETV1	chromosome:C_jacchus3.2.1:8:1:128169293:1	42246673	42344509	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051592}  [Source:UniProtKB/TrEMBL;Acc:F6UAF2]
ENSCJAG00000016804	KNOWN_BY_PROJECTION	protein_coding	EVL	chromosome:C_jacchus3.2.1:10:1:132174527:1	125951933	126037886	D	Enah/Vasp-like [Source:HGNC Symbol;Acc:HGNC:20234]
ENSCJAG00000000855	NOVEL	pseudogene	ENSCJAG00000000855	chromosome:C_jacchus3.2.1:8:1:128169293:1	43406326	43407592	D	<no descrition>
ENSCJAG00000004316	KNOWN	protein_coding	ENSCJAG00000004316	chromosome:C_jacchus3.2.1:1:1:210400635:1	12545789	12580125	D	Ras-related protein Rap-2a {ECO:0000313|EMBL:JAB22168.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007816}  [Source:UniProtKB/TrEMBL;Acc:F6UKW7]
ENSCJAG00000000852	KNOWN	protein_coding	ARL4A	chromosome:C_jacchus3.2.1:8:1:128169293:1	43536814	43540870	R	ADP-ribosylation factor-like protein 4A {ECO:0000313|EMBL:JAB03836.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001448}  [Source:UniProtKB/TrEMBL;Acc:F6X6D4]
ENSCJAG00000000815	KNOWN_BY_PROJECTION	protein_coding	SCIN	chromosome:C_jacchus3.2.1:8:1:128169293:1	43579376	43659990	R	scinderin [Source:HGNC Symbol;Acc:HGNC:21695]
ENSCJAG00000000800	KNOWN_BY_PROJECTION	protein_coding	VWDE	chromosome:C_jacchus3.2.1:8:1:128169293:1	43835950	43919288	D	von Willebrand factor D and EGF domains [Source:HGNC Symbol;Acc:HGNC:21897]
ENSCJAG00000004323	KNOWN_BY_PROJECTION	protein_coding	IPO5	chromosome:C_jacchus3.2.1:1:1:210400635:1	13082073	13148201	D	importin 5 [Source:HGNC Symbol;Acc:HGNC:6402]
ENSCJAG00000000792	KNOWN	protein_coding	TMEM106B	chromosome:C_jacchus3.2.1:8:1:128169293:1	44029880	44050531	R	Transmembrane protein 106B {ECO:0000313|EMBL:JAB06604.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001360}  [Source:UniProtKB/TrEMBL;Acc:F7BZF0]
ENSCJAG00000000774	KNOWN_BY_PROJECTION	protein_coding	THSD7A	chromosome:C_jacchus3.2.1:8:1:128169293:1	44687474	44997490	D	thrombospondin, type I, domain containing 7A [Source:HGNC Symbol;Acc:HGNC:22207]
ENSCJAG00000000753	KNOWN	protein_coding	PHF14	chromosome:C_jacchus3.2.1:8:1:128169293:1	45221798	45420826	R	PHD finger protein 14 {ECO:0000313|EMBL:JAB15609.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001306}  [Source:UniProtKB/TrEMBL;Acc:F7CFB8]
ENSCJAG00000000748	KNOWN	protein_coding	NDUFA4	chromosome:C_jacchus3.2.1:8:1:128169293:1	45446668	45454402	D	Callithrix jacchus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4), mRNA. [Source:RefSeq mRNA;Acc:NM_001253776]
ENSCJAG00000033069	NOVEL	protein_coding	ENSCJAG00000033069	chromosome:C_jacchus3.2.1:8:1:128169293:1	46465347	46465893	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047291}  [Source:UniProtKB/TrEMBL;Acc:F7IDH6]
ENSCJAG00000000746	KNOWN_BY_PROJECTION	protein_coding	NXPH1	chromosome:C_jacchus3.2.1:8:1:128169293:1	47768663	48092874	R	neurexophilin 1 [Source:HGNC Symbol;Acc:HGNC:20693]
ENSCJAG00000016847	KNOWN	protein_coding	DEGS2	chromosome:C_jacchus3.2.1:10:1:132174527:1	126020499	126054163	R	Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 {ECO:0000313|EMBL:JAB03653.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043396}  [Source:UniProtKB/TrEMBL;Acc:F7IM28]
ENSCJAG00000016853	NOVEL	protein_coding	ENSCJAG00000016853	chromosome:C_jacchus3.2.1:10:1:132174527:1	126131635	126165056	D	<no descrition>
ENSCJAG00000016864	KNOWN	protein_coding	SLC25A29	chromosome:C_jacchus3.2.1:10:1:132174527:1	126178629	126195968	R	Mitochondrial carnitine/acylcarnitine carrier protein CACL {ECO:0000313|EMBL:JAB08486.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031043}  [Source:UniProtKB/TrEMBL;Acc:F7HYS4]
ENSCJAG00000000720	KNOWN	protein_coding	ICA1	chromosome:C_jacchus3.2.1:8:1:128169293:1	48261699	48427494	D	Islet cell autoantigen 1 {ECO:0000313|EMBL:JAB09005.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001267}  [Source:UniProtKB/TrEMBL;Acc:F6YI24]
ENSCJAG00000036979	NOVEL	protein_coding	ENSCJAG00000036979	chromosome:C_jacchus3.2.1:10:1:132174527:1	126213485	126221803	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031110}  [Source:UniProtKB/TrEMBL;Acc:F7IRY1]
ENSCJAG00000016878	KNOWN_BY_PROJECTION	protein_coding	SLC25A47	chromosome:C_jacchus3.2.1:10:1:132174527:1	126213558	126221082	D	solute carrier family 25, member 47 [Source:HGNC Symbol;Acc:HGNC:20115]
ENSCJAG00000016912	KNOWN	protein_coding	WARS	chromosome:C_jacchus3.2.1:10:1:132174527:1	126224631	126264964	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044340}  [Source:UniProtKB/TrEMBL;Acc:F7FXV2]
ENSCJAG00000000713	KNOWN_BY_PROJECTION	protein_coding	GLCCI1	chromosome:C_jacchus3.2.1:8:1:128169293:1	48459391	48606549	R	glucocorticoid induced transcript 1 [Source:HGNC Symbol;Acc:HGNC:18713]
ENSCJAG00000016951	KNOWN_BY_PROJECTION	protein_coding	WDR25	chromosome:C_jacchus3.2.1:10:1:132174527:1	126265039	126426538	D	WD repeat domain 25 [Source:HGNC Symbol;Acc:HGNC:21064]
ENSCJAG00000000711	NOVEL	protein_coding	ENSCJAG00000000711	chromosome:C_jacchus3.2.1:8:1:128169293:1	48653587	48944625	R	<no descrition>
ENSCJAG00000016957	KNOWN_BY_PROJECTION	protein_coding	BEGAIN	chromosome:C_jacchus3.2.1:10:1:132174527:1	126433781	126470411	R	brain-enriched guanylate kinase-associated [Source:HGNC Symbol;Acc:HGNC:24163]
ENSCJAG00000000705	KNOWN	protein_coding	RPA3	chromosome:C_jacchus3.2.1:8:1:128169293:1	48976565	48980091	D	Replication protein A 14 kDa subunit {ECO:0000313|EMBL:JAB01804.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001211}  [Source:UniProtKB/TrEMBL;Acc:F6ZI81]
ENSCJAG00000000686	KNOWN_BY_PROJECTION	protein_coding	MIOS	chromosome:C_jacchus3.2.1:8:1:128169293:1	49001143	49041259	R	missing oocyte, meiosis regulator, homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21905]
ENSCJAG00000000636	KNOWN	protein_coding	COL28A1	chromosome:C_jacchus3.2.1:8:1:128169293:1	49064962	49243431	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001176}  [Source:UniProtKB/TrEMBL;Acc:F6UXW3]
ENSCJAG00000016972	KNOWN	protein_coding	DLK1	chromosome:C_jacchus3.2.1:10:1:132174527:1	126621965	126630423	D	Protein delta homolog 1 {ECO:0000313|EMBL:JAB12070.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031244}  [Source:UniProtKB/TrEMBL;Acc:F7ICR0]
ENSCJAG00000000629	KNOWN_BY_PROJECTION	protein_coding	C1GALT1	chromosome:C_jacchus3.2.1:8:1:128169293:1	49390630	49442697	R	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24337]
ENSCJAG00000000618	KNOWN_BY_PROJECTION	protein_coding	ASNS	chromosome:C_jacchus3.2.1:8:1:128169293:1	49639045	49655497	D	asparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]
ENSCJAG00000004456	KNOWN	protein_coding	FARP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	13282556	13606523	D	FERM, RhoGEF and pleckstrin domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB09781.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008148}  [Source:UniProtKB/TrEMBL;Acc:F7HNL0]
ENSCJAG00000000604	KNOWN_BY_PROJECTION	protein_coding	TAC1	chromosome:C_jacchus3.2.1:8:1:128169293:1	49731706	49740649	R	tachykinin, precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
ENSCJAG00000004501	KNOWN_BY_PROJECTION	protein_coding	RNF113B	chromosome:C_jacchus3.2.1:1:1:210400635:1	13315998	13317097	R	ring finger protein 113B [Source:HGNC Symbol;Acc:HGNC:17267]
ENSCJAG00000000599	NOVEL	pseudogene	ENSCJAG00000000599	chromosome:C_jacchus3.2.1:8:1:128169293:1	50081059	50081560	R	<no descrition>
ENSCJAG00000000598	KNOWN_BY_PROJECTION	protein_coding	ACN9	chromosome:C_jacchus3.2.1:8:1:128169293:1	50276327	50343056	R	ACN9 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:21752]
ENSCJAG00000000589	KNOWN_BY_PROJECTION	protein_coding	DLX5	chromosome:C_jacchus3.2.1:8:1:128169293:1	50428209	50433036	D	distal-less homeobox 5 [Source:HGNC Symbol;Acc:HGNC:2918]
ENSCJAG00000004508	KNOWN_BY_PROJECTION	protein_coding	STK24	chromosome:C_jacchus3.2.1:1:1:210400635:1	13609838	13747400	R	serine/threonine kinase 24 [Source:HGNC Symbol;Acc:HGNC:11403]
ENSCJAG00000000588	KNOWN_BY_PROJECTION	protein_coding	DLX6	chromosome:C_jacchus3.2.1:8:1:128169293:1	50443719	50448354	R	distal-less homeobox 6 [Source:HGNC Symbol;Acc:HGNC:2919]
ENSCJAG00000034463	NOVEL	protein_coding	ENSCJAG00000034463	chromosome:C_jacchus3.2.1:8:1:128169293:1	50555782	50557686	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052336}  [Source:UniProtKB/TrEMBL;Acc:F7HKD6]
ENSCJAG00000000585	KNOWN	protein_coding	SHFM1	chromosome:C_jacchus3.2.1:8:1:128169293:1	50796582	50817526	D	26S proteasome complex subunit DSS1 {ECO:0000313|EMBL:JAB16353.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001008}  [Source:UniProtKB/TrEMBL;Acc:F7C1S5]
ENSCJAG00000023204	NOVEL	pseudogene	ENSCJAG00000023204	chromosome:C_jacchus3.2.1:8:1:128169293:1	50872851	50873494	D	<no descrition>
ENSCJAG00000016996	NOVEL	protein_coding	ENSCJAG00000016996	chromosome:C_jacchus3.2.1:10:1:132174527:1	126734253	126735136	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031256}  [Source:UniProtKB/TrEMBL;Acc:F7ICN9]
ENSCJAG00000017010	NOVEL	pseudogene	ENSCJAG00000017010	chromosome:C_jacchus3.2.1:10:1:132174527:1	126789871	126793667	R	<no descrition>
ENSCJAG00000017012	NOVEL	protein_coding	ENSCJAG00000017012	chromosome:C_jacchus3.2.1:10:1:132174527:1	126802165	126802493	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031273}  [Source:UniProtKB/TrEMBL;Acc:F7IAG1]
ENSCJAG00000017013	NOVEL	protein_coding	ENSCJAG00000017013	chromosome:C_jacchus3.2.1:10:1:132174527:1	127514810	127517160	D	Iodothyronine deiodinase {ECO:0000256|RuleBase:RU000676}  [Source:UniProtKB/TrEMBL;Acc:F7IAF0]
ENSCJAG00000000554	KNOWN	protein_coding	SLC25A13	chromosome:C_jacchus3.2.1:8:1:128169293:1	51191726	51400753	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000986}  [Source:UniProtKB/TrEMBL;Acc:F6RDX5]
ENSCJAG00000011621	KNOWN_BY_PROJECTION	protein_coding	PPP2R5C	chromosome:C_jacchus3.2.1:10:1:132174527:1	127713902	127890789	D	protein phosphatase 2, regulatory subunit B', gamma [Source:HGNC Symbol;Acc:HGNC:9311]
ENSCJAG00000020832	KNOWN_BY_PROJECTION	protein_coding	SLC15A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	13861628	13903958	R	solute carrier family 15 (oligopeptide transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10920]
ENSCJAG00000000528	KNOWN	protein_coding	DYNC1I1	chromosome:C_jacchus3.2.1:8:1:128169293:1	51420186	51756443	R	Cytoplasmic dynein 1 intermediate chain 1 isoform a {ECO:0000313|EMBL:JAB27641.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000952}  [Source:UniProtKB/TrEMBL;Acc:F6RR29]
ENSCJAG00000011576	KNOWN	protein_coding	DYNC1H1	chromosome:C_jacchus3.2.1:10:1:132174527:1	127919545	127982703	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021329}  [Source:UniProtKB/TrEMBL;Acc:F6PU71]
ENSCJAG00000011566	KNOWN	protein_coding	ENSCJAG00000011566	chromosome:C_jacchus3.2.1:10:1:132174527:1	127993999	128007367	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021252}  [Source:UniProtKB/TrEMBL;Acc:F6R2W1]
ENSCJAG00000009940	NOVEL	protein_coding	ENSCJAG00000009940	chromosome:C_jacchus3.2.1:10:1:132174527:1	128037367	128038403	R	<no descrition>
ENSCJAG00000013229	KNOWN	protein_coding	PDK4	chromosome:C_jacchus3.2.1:8:1:128169293:1	51946114	51957544	D	Pyruvate dehydrogenase kinase, isozyme 4 {ECO:0000313|EMBL:JAB05722.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024369}  [Source:UniProtKB/TrEMBL;Acc:F7GY25]
ENSCJAG00000009920	KNOWN	protein_coding	WDR20	chromosome:C_jacchus3.2.1:10:1:132174527:1	128104322	128201060	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018241}; WD repeat-containing protein 20 isoform 1 {ECO:0000313|EMBL:JAB50037.1}  [Source:UniProtKB/TrEMBL;Acc:F7GR07]
ENSCJAG00000013280	KNOWN_BY_PROJECTION	protein_coding	ASB4	chromosome:C_jacchus3.2.1:8:1:128169293:1	52000804	52056004	R	ankyrin repeat and SOCS box containing 4 [Source:HGNC Symbol;Acc:HGNC:16009]
ENSCJAG00000013295	KNOWN	protein_coding	PON2	chromosome:C_jacchus3.2.1:8:1:128169293:1	52110987	52142698	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044636}  [Source:UniProtKB/TrEMBL;Acc:F7D0R7]
ENSCJAG00000013355	KNOWN	protein_coding	PON1	chromosome:C_jacchus3.2.1:8:1:128169293:1	52148239	52243611	D	Serum paraoxonase/lactonase 3 {ECO:0000313|EMBL:JAB10365.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024587}  [Source:UniProtKB/TrEMBL;Acc:F7FN35]
ENSCJAG00000013400	KNOWN_BY_PROJECTION	protein_coding	PPP1R9A	chromosome:C_jacchus3.2.1:8:1:128169293:1	52251167	52633020	R	protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
ENSCJAG00000013420	NOVEL	pseudogene	ENSCJAG00000013420	chromosome:C_jacchus3.2.1:8:1:128169293:1	52544167	52545218	D	<no descrition>
ENSCJAG00000034628	NOVEL	pseudogene	ENSCJAG00000034628	chromosome:C_jacchus3.2.1:8:1:128169293:1	52669015	52669466	D	<no descrition>
ENSCJAG00000020855	KNOWN_BY_PROJECTION	protein_coding	DOCK9	chromosome:C_jacchus3.2.1:1:1:210400635:1	13942795	14242148	R	dedicator of cytokinesis 9 [Source:HGNC Symbol;Acc:HGNC:14132]
ENSCJAG00000013426	KNOWN_BY_PROJECTION	protein_coding	SGCE	chromosome:C_jacchus3.2.1:8:1:128169293:1	52831494	52909276	D	sarcoglycan, epsilon [Source:HGNC Symbol;Acc:HGNC:10808]
ENSCJAG00000013493	KNOWN_BY_PROJECTION	protein_coding	CASD1	chromosome:C_jacchus3.2.1:8:1:128169293:1	52944959	52995633	R	CAS1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16014]
ENSCJAG00000009899	KNOWN_BY_PROJECTION	protein_coding	MOK	chromosome:C_jacchus3.2.1:10:1:132174527:1	128204647	128249770	R	MOK protein kinase [Source:HGNC Symbol;Acc:HGNC:9833]
ENSCJAG00000009880	KNOWN_BY_PROJECTION	protein_coding	ZNF839	chromosome:C_jacchus3.2.1:10:1:132174527:1	128258035	128281662	D	zinc finger protein 839 [Source:HGNC Symbol;Acc:HGNC:20345]
ENSCJAG00000009870	KNOWN_BY_PROJECTION	protein_coding	CINP	chromosome:C_jacchus3.2.1:10:1:132174527:1	128282453	128296367	R	cyclin-dependent kinase 2 interacting protein [Source:HGNC Symbol;Acc:HGNC:23789]
ENSCJAG00000013547	KNOWN_BY_PROJECTION	protein_coding	COL1A2	chromosome:C_jacchus3.2.1:8:1:128169293:1	53082558	53120083	R	collagen, type I, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2198]
ENSCJAG00000009815	KNOWN_BY_PROJECTION	protein_coding	TECPR2	chromosome:C_jacchus3.2.1:10:1:132174527:1	128296515	128444294	D	tectonin beta-propeller repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:19957]
ENSCJAG00000009784	KNOWN_BY_PROJECTION	protein_coding	RCOR1	chromosome:C_jacchus3.2.1:10:1:132174527:1	128374690	128678650	D	REST corepressor 1 [Source:HGNC Symbol;Acc:HGNC:17441]
ENSCJAG00000009811	KNOWN	protein_coding	ANKRD9	chromosome:C_jacchus3.2.1:10:1:132174527:1	128453492	128455564	R	Ankyrin repeat domain-containing protein 9 {ECO:0000313|EMBL:JAB11506.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017985}  [Source:UniProtKB/TrEMBL;Acc:F7I504]
ENSCJAG00000013720	KNOWN	protein_coding	BET1	chromosome:C_jacchus3.2.1:8:1:128169293:1	53524682	53536931	D	BET1 homolog {ECO:0000313|EMBL:JAB05129.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042192}  [Source:UniProtKB/TrEMBL;Acc:F6ULL8]
ENSCJAG00000009729	KNOWN	protein_coding	TRAF3	chromosome:C_jacchus3.2.1:10:1:132174527:1	128794058	128873891	D	TNF receptor-associated factor 3 isoform 1 {ECO:0000313|EMBL:JAB02638.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017928}  [Source:UniProtKB/TrEMBL;Acc:F7IEC2]
ENSCJAG00000013733	KNOWN	protein_coding	GNG11	chromosome:C_jacchus3.2.1:8:1:128169293:1	53616025	53620607	R	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F6X977]
ENSCJAG00000013737	KNOWN	protein_coding	GNGT1	chromosome:C_jacchus3.2.1:8:1:128169293:1	53627070	53631811	R	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F6WMN3]
ENSCJAG00000013741	KNOWN_BY_PROJECTION	protein_coding	TFPI2	chromosome:C_jacchus3.2.1:8:1:128169293:1	53645897	53650222	D	tissue factor pathway inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11761]
ENSCJAG00000009783	NOVEL	protein_coding	ENSCJAG00000009783	chromosome:C_jacchus3.2.1:10:1:132174527:1	128802550	128803550	R	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}  [Source:UniProtKB/TrEMBL;Acc:F7IC15]
ENSCJAG00000003281	KNOWN_BY_PROJECTION	protein_coding	AMN	chromosome:C_jacchus3.2.1:10:1:132174527:1	128893475	128900375	D	amnion associated transmembrane protein [Source:HGNC Symbol;Acc:HGNC:14604]
ENSCJAG00000013758	KNOWN_BY_PROJECTION	protein_coding	CALCR	chromosome:C_jacchus3.2.1:8:1:128169293:1	53912787	54085122	D	calcitonin receptor [Source:HGNC Symbol;Acc:HGNC:1440]
ENSCJAG00000003298	KNOWN_BY_PROJECTION	protein_coding	CDC42BPB	chromosome:C_jacchus3.2.1:10:1:132174527:1	128904484	129022994	R	CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
ENSCJAG00000003368	NOVEL	pseudogene	ENSCJAG00000003368	chromosome:C_jacchus3.2.1:10:1:132174527:1	129007650	129008279	D	<no descrition>
ENSCJAG00000017071	KNOWN_BY_PROJECTION	protein_coding	EXOC3L4	chromosome:C_jacchus3.2.1:10:1:132174527:1	129074554	129085286	D	exocyst complex component 3-like 4 [Source:HGNC Symbol;Acc:HGNC:20120]
ENSCJAG00000017086	KNOWN_BY_PROJECTION	protein_coding	TNFAIP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	129104267	129115127	D	tumor necrosis factor, alpha-induced protein 2 [Source:HGNC Symbol;Acc:HGNC:11895]
ENSCJAG00000020945	KNOWN_BY_PROJECTION	protein_coding	RPL7L1	chromosome:C_jacchus3.2.1:1:1:210400635:1	14104256	14104988	R	ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:HGNC:21370]
ENSCJAG00000020946	KNOWN	protein_coding	UBAC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	14342292	14540448	D	Ubiquitin-associated domain-containing protein 2 isoform 1 {ECO:0000313|EMBL:JAB06787.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044199}  [Source:UniProtKB/TrEMBL;Acc:F7FK29]
ENSCJAG00000013774	KNOWN_BY_PROJECTION	protein_coding	CCDC132	chromosome:C_jacchus3.2.1:8:1:128169293:1	54184892	54331257	R	coiled-coil domain containing 132 [Source:HGNC Symbol;Acc:HGNC:25956]
ENSCJAG00000017102	NOVEL	protein_coding	ENSCJAG00000017102	chromosome:C_jacchus3.2.1:10:1:132174527:1	129255815	129256301	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031425}  [Source:UniProtKB/TrEMBL;Acc:F7IHD0]
ENSCJAG00000017104	KNOWN	protein_coding	ENSCJAG00000017104	chromosome:C_jacchus3.2.1:10:1:132174527:1	129262946	129270533	D	Eukaryotic translation initiation factor 5 {ECO:0000313|EMBL:JAB07556.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043296}  [Source:UniProtKB/TrEMBL;Acc:F7I808]
ENSCJAG00000017117	KNOWN	protein_coding	TRMT61A	chromosome:C_jacchus3.2.1:10:1:132174527:1	129495714	129503632	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031465}; tRNA (Adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A {ECO:0000313|EMBL:JAB05193.1}  [Source:UniProtKB/TrEMBL;Acc:F7IAA1]
ENSCJAG00000017123	KNOWN_BY_PROJECTION	protein_coding	BAG5	chromosome:C_jacchus3.2.1:10:1:132174527:1	129526409	129529054	R	BCL2-associated athanogene 5 [Source:HGNC Symbol;Acc:HGNC:941]
ENSCJAG00000017134	KNOWN	protein_coding	KLC1	chromosome:C_jacchus3.2.1:10:1:132174527:1	129529754	129647396	D	Kinesin light chain 1 isoform 2 {ECO:0000313|EMBL:JAB07443.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031573}  [Source:UniProtKB/TrEMBL;Acc:F7IRQ4]
ENSCJAG00000017130	NOVEL	protein_coding	ENSCJAG00000017130	chromosome:C_jacchus3.2.1:10:1:132174527:1	129539894	129540802	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031480}  [Source:UniProtKB/TrEMBL;Acc:F7I7W7]
ENSCJAG00000017182	KNOWN	protein_coding	XRCC3	chromosome:C_jacchus3.2.1:10:1:132174527:1	129644640	129656644	R	DNA repair protein XRCC3 {ECO:0000313|EMBL:JAB02282.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031596}  [Source:UniProtKB/TrEMBL;Acc:F7IP96]
ENSCJAG00000013864	KNOWN_BY_PROJECTION	protein_coding	HEPACAM2	chromosome:C_jacchus3.2.1:8:1:128169293:1	54337613	54374820	D	HEPACAM family member 2 [Source:HGNC Symbol;Acc:HGNC:27364]
ENSCJAG00000017190	KNOWN_BY_PROJECTION	protein_coding	ZFYVE21	chromosome:C_jacchus3.2.1:10:1:132174527:1	129661795	129680309	D	zinc finger, FYVE domain containing 21 [Source:HGNC Symbol;Acc:HGNC:20760]
ENSCJAG00000020951	NOVEL	pseudogene	ENSCJAG00000020951	chromosome:C_jacchus3.2.1:1:1:210400635:1	14392961	14393283	D	<no descrition>
ENSCJAG00000023298	KNOWN_BY_PROJECTION	protein_coding	GPR18	chromosome:C_jacchus3.2.1:1:1:210400635:1	14396802	14404076	R	G protein-coupled receptor 18 [Source:HGNC Symbol;Acc:HGNC:4472]
ENSCJAG00000020952	KNOWN_BY_PROJECTION	protein_coding	GPR183	chromosome:C_jacchus3.2.1:1:1:210400635:1	14447792	14460804	R	G protein-coupled receptor 183 [Source:HGNC Symbol;Acc:HGNC:3128]
ENSCJAG00000013899	KNOWN_BY_PROJECTION	protein_coding	SAMD9L	chromosome:C_jacchus3.2.1:8:1:128169293:1	54405622	54420907	D	sterile alpha motif domain containing 9-like [Source:HGNC Symbol;Acc:HGNC:1349]
ENSCJAG00000020955	KNOWN	protein_coding	TM9SF2	chromosome:C_jacchus3.2.1:1:1:210400635:1	14661528	14726407	D	Transmembrane 9 superfamily member 2 {ECO:0000313|EMBL:JAB06289.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039020}  [Source:UniProtKB/TrEMBL;Acc:F7FFJ5]
ENSCJAG00000013902	KNOWN_BY_PROJECTION	protein_coding	CDK6	chromosome:C_jacchus3.2.1:8:1:128169293:1	54718037	54962355	D	cyclin-dependent kinase 6 [Source:HGNC Symbol;Acc:HGNC:1777]
ENSCJAG00000013910	KNOWN_BY_PROJECTION	protein_coding	FAM133A	chromosome:C_jacchus3.2.1:8:1:128169293:1	54974325	55004182	D	family with sequence similarity 133, member A [Source:HGNC Symbol;Acc:HGNC:26748]
ENSCJAG00000013913	NOVEL	protein_coding	ENSCJAG00000013913	chromosome:C_jacchus3.2.1:8:1:128169293:1	55008200	55023627	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025561}  [Source:UniProtKB/TrEMBL;Acc:F6X5F8]
ENSCJAG00000013917	KNOWN_BY_PROJECTION	protein_coding	RBM48	chromosome:C_jacchus3.2.1:8:1:128169293:1	55025732	55033449	R	RNA binding motif protein 48 [Source:HGNC Symbol;Acc:HGNC:21785]
ENSCJAG00000017204	KNOWN_BY_PROJECTION	protein_coding	PPP1R13B	chromosome:C_jacchus3.2.1:10:1:132174527:1	129680393	129754370	R	protein phosphatase 1, regulatory subunit 13B [Source:HGNC Symbol;Acc:HGNC:14950]
ENSCJAG00000013927	KNOWN_BY_PROJECTION	protein_coding	PEX1	chromosome:C_jacchus3.2.1:8:1:128169293:1	55033775	55080124	D	peroxisomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8850]
ENSCJAG00000017233	KNOWN_BY_PROJECTION	protein_coding	C14orf2	chromosome:C_jacchus3.2.1:10:1:132174527:1	129876645	129883322	R	chromosome 14 open reading frame 2 [Source:HGNC Symbol;Acc:HGNC:1188]
ENSCJAG00000013956	KNOWN	protein_coding	GATAD1	chromosome:C_jacchus3.2.1:8:1:128169293:1	55109241	55123347	R	GATA zinc finger domain-containing protein 1 {ECO:0000313|EMBL:JAB01623.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025655}  [Source:UniProtKB/TrEMBL;Acc:F7AXR7]
ENSCJAG00000035126	NOVEL	protein_coding	ENSCJAG00000035126	chromosome:C_jacchus3.2.1:8:1:128169293:1	55136943	55155848	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049180}  [Source:UniProtKB/TrEMBL;Acc:F7A054]
ENSCJAG00000017235	KNOWN_BY_PROJECTION	protein_coding	TDRD9	chromosome:C_jacchus3.2.1:10:1:132174527:1	129945107	130049339	D	tudor domain containing 9 [Source:HGNC Symbol;Acc:HGNC:20122]
ENSCJAG00000013964	KNOWN	protein_coding	ANKIB1	chromosome:C_jacchus3.2.1:8:1:128169293:1	55167082	55324328	R	Ankyrin repeat and IBR domain-containing protein 1 {ECO:0000313|EMBL:JAB06176.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025730}  [Source:UniProtKB/TrEMBL;Acc:F6WHT0]
ENSCJAG00000020978	NOVEL	pseudogene	ENSCJAG00000020978	chromosome:C_jacchus3.2.1:1:1:210400635:1	14756185	14756933	D	<no descrition>
ENSCJAG00000020979	KNOWN	protein_coding	CLYBL	chromosome:C_jacchus3.2.1:1:1:210400635:1	14764825	15060749	D	Citrate lyase subunit beta-like protein, mitochondrial {ECO:0000313|EMBL:JAB04478.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039043}  [Source:UniProtKB/TrEMBL;Acc:F7F242]
ENSCJAG00000020987	KNOWN_BY_PROJECTION	protein_coding	ZIC5	chromosome:C_jacchus3.2.1:1:1:210400635:1	15120646	15125683	R	Zic family member 5 [Source:HGNC Symbol;Acc:HGNC:20322]
ENSCJAG00000020988	KNOWN_BY_PROJECTION	protein_coding	ZIC2	chromosome:C_jacchus3.2.1:1:1:210400635:1	15137821	15142495	D	Zic family member 2 [Source:HGNC Symbol;Acc:HGNC:12873]
ENSCJAG00000020998	KNOWN	protein_coding	PCCA	chromosome:C_jacchus3.2.1:1:1:210400635:1	15232590	15681785	D	Propionyl-CoA carboxylase alpha chain, mitochondrial isoform a {ECO:0000313|EMBL:JAB30040.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039105}  [Source:UniProtKB/TrEMBL;Acc:F7CWB9]
ENSCJAG00000014000	KNOWN	protein_coding	KRIT1	chromosome:C_jacchus3.2.1:8:1:128169293:1	55324455	55369100	D	Krev interaction trapped protein 1 isoform 2 {ECO:0000313|EMBL:JAB33444.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046476}  [Source:UniProtKB/TrEMBL;Acc:F7IK87]
ENSCJAG00000017272	KNOWN_BY_PROJECTION	protein_coding	KIF26A	chromosome:C_jacchus3.2.1:10:1:132174527:1	130144692	130177457	D	kinesin family member 26A [Source:HGNC Symbol;Acc:HGNC:20226]
ENSCJAG00000032464	NOVEL	protein_coding	ENSCJAG00000032464	chromosome:C_jacchus3.2.1:10:1:132174527:1	130449796	130451123	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049840}  [Source:UniProtKB/TrEMBL;Acc:F6ZC69]
ENSCJAG00000014016	KNOWN_BY_PROJECTION	protein_coding	LRRD1	chromosome:C_jacchus3.2.1:8:1:128169293:1	55390784	55415543	D	leucine-rich repeats and death domain containing 1 [Source:HGNC Symbol;Acc:HGNC:34300]
ENSCJAG00000007889	KNOWN_BY_PROJECTION	protein_coding	C14orf180	chromosome:C_jacchus3.2.1:10:1:132174527:1	130606436	130617349	D	chromosome 14 open reading frame 180 [Source:HGNC Symbol;Acc:HGNC:33795]
ENSCJAG00000014019	NOVEL	protein_coding	ENSCJAG00000014019	chromosome:C_jacchus3.2.1:8:1:128169293:1	55433842	55456267	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025799}  [Source:UniProtKB/TrEMBL;Acc:F7CSA0]
ENSCJAG00000007904	KNOWN_BY_PROJECTION	protein_coding	TMEM179	chromosome:C_jacchus3.2.1:10:1:132174527:1	130621705	130635976	R	transmembrane protein 179 [Source:HGNC Symbol;Acc:HGNC:20137]
ENSCJAG00000014035	KNOWN	protein_coding	AKAP9	chromosome:C_jacchus3.2.1:8:1:128169293:1	55459387	55636068	R	A-kinase anchor protein 9 isoform 2 {ECO:0000313|EMBL:JAB48071.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026042}  [Source:UniProtKB/TrEMBL;Acc:F7HVH7]
ENSCJAG00000009247	KNOWN_BY_PROJECTION	protein_coding	INF2	chromosome:C_jacchus3.2.1:10:1:132174527:1	130741821	130770699	D	inverted formin, FH2 and WH2 domain containing [Source:HGNC Symbol;Acc:HGNC:23791]
ENSCJAG00000021010	KNOWN_BY_PROJECTION	protein_coding	GGACT	chromosome:C_jacchus3.2.1:1:1:210400635:1	15682865	15685404	R	gamma-glutamylamine cyclotransferase [Source:HGNC Symbol;Acc:HGNC:25100]
ENSCJAG00000009276	KNOWN_BY_PROJECTION	protein_coding	ADSSL1	chromosome:C_jacchus3.2.1:10:1:132174527:1	130783154	130795817	D	adenylosuccinate synthase like 1 [Source:HGNC Symbol;Acc:HGNC:20093]
ENSCJAG00000014169	KNOWN_BY_PROJECTION	protein_coding	MTERF1	chromosome:C_jacchus3.2.1:8:1:128169293:1	55693936	55699793	D	mitochondrial transcription termination factor 1 [Source:HGNC Symbol;Acc:HGNC:21463]
ENSCJAG00000021012	KNOWN_BY_PROJECTION	protein_coding	TMTC4	chromosome:C_jacchus3.2.1:1:1:210400635:1	15756420	15835141	R	transmembrane and tetratricopeptide repeat containing 4 [Source:HGNC Symbol;Acc:HGNC:25904]
ENSCJAG00000009290	KNOWN	protein_coding	SIVA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	130800069	130806311	D	Apoptosis regulatory protein Siva isoform 1 {ECO:0000313|EMBL:JAB44976.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017026}  [Source:UniProtKB/TrEMBL;Acc:F7HYP0]
ENSCJAG00000009300	KNOWN_BY_PROJECTION	protein_coding	AKT1	chromosome:C_jacchus3.2.1:10:1:132174527:1	130816478	130828485	R	v-akt murine thymoma viral oncogene homolog 1 [Source:HGNC Symbol;Acc:HGNC:391]
ENSCJAG00000009308	NOVEL	pseudogene	ENSCJAG00000009308	chromosome:C_jacchus3.2.1:10:1:132174527:1	130851962	130853263	D	<no descrition>
ENSCJAG00000034808	NOVEL	protein_coding	ENSCJAG00000034808	chromosome:C_jacchus3.2.1:10:1:132174527:1	130859328	130860140	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046894}  [Source:UniProtKB/TrEMBL;Acc:F7IK02]
ENSCJAG00000014175	KNOWN	protein_coding	CDK14	chromosome:C_jacchus3.2.1:8:1:128169293:1	56366104	57144730	R	Cyclin-dependent kinase 14  [Source:UniProtKB/Swiss-Prot;Acc:B0VXE8]
ENSCJAG00000021036	KNOWN_BY_PROJECTION	protein_coding	NALCN	chromosome:C_jacchus3.2.1:1:1:210400635:1	16226140	16601285	R	sodium leak channel, non selective [Source:HGNC Symbol;Acc:HGNC:19082]
ENSCJAG00000002052	KNOWN_BY_PROJECTION	protein_coding	CEP170B	chromosome:C_jacchus3.2.1:10:1:132174527:1	130920350	130956089	D	centrosomal protein 170B [Source:HGNC Symbol;Acc:HGNC:20362]
ENSCJAG00000002051	NOVEL	protein_coding	ENSCJAG00000002051	chromosome:C_jacchus3.2.1:10:1:132174527:1	130960996	130961663	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003693}  [Source:UniProtKB/TrEMBL;Acc:F7GP86]
ENSCJAG00000002039	KNOWN	protein_coding	PLD4	chromosome:C_jacchus3.2.1:10:1:132174527:1	130981326	130985455	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003688}  [Source:UniProtKB/TrEMBL;Acc:F7GUB3]
ENSCJAG00000002027	KNOWN_BY_PROJECTION	protein_coding	AHNAK2	chromosome:C_jacchus3.2.1:10:1:132174527:1	130991799	131009381	R	AHNAK nucleoprotein 2 [Source:HGNC Symbol;Acc:HGNC:20125]
ENSCJAG00000002024	KNOWN_BY_PROJECTION	protein_coding	C14orf79	chromosome:C_jacchus3.2.1:10:1:132174527:1	131042684	131049344	D	chromosome 14 open reading frame 79 [Source:HGNC Symbol;Acc:HGNC:20126]
ENSCJAG00000014219	KNOWN_BY_PROJECTION	protein_coding	CFAP69	chromosome:C_jacchus3.2.1:8:1:128169293:1	57081480	57309662	R	cilia and flagella associated protein 69 [Source:HGNC Symbol;Acc:HGNC:26107]
ENSCJAG00000002020	KNOWN	protein_coding	CDCA4	chromosome:C_jacchus3.2.1:10:1:132174527:1	131061462	131073178	R	Cell division cycle-associated protein 4 {ECO:0000313|EMBL:JAB25923.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003643}  [Source:UniProtKB/TrEMBL;Acc:F7H4R5]
ENSCJAG00000011755	KNOWN_BY_PROJECTION	protein_coding	GPR132	chromosome:C_jacchus3.2.1:10:1:132174527:1	131094862	131106608	R	G protein-coupled receptor 132 [Source:HGNC Symbol;Acc:HGNC:17482]
ENSCJAG00000011762	KNOWN_BY_PROJECTION	protein_coding	JAG2	chromosome:C_jacchus3.2.1:10:1:132174527:1	131185157	131214214	R	jagged 2 [Source:HGNC Symbol;Acc:HGNC:6189]
ENSCJAG00000023041	KNOWN	protein_coding	CLDN12	chromosome:C_jacchus3.2.1:8:1:128169293:1	57130325	57144567	R	Claudin {ECO:0000256|RuleBase:RU060637}  [Source:UniProtKB/TrEMBL;Acc:B0VXE7]
ENSCJAG00000014212	KNOWN_BY_PROJECTION	protein_coding	GTPBP10	chromosome:C_jacchus3.2.1:8:1:128169293:1	57157285	57185650	R	GTP-binding protein 10 (putative) [Source:HGNC Symbol;Acc:HGNC:25106]
ENSCJAG00000021057	KNOWN_BY_PROJECTION	protein_coding	ITGBL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	16661023	16928418	D	integrin, beta-like 1 (with EGF-like repeat domains) [Source:HGNC Symbol;Acc:HGNC:6164]
ENSCJAG00000014261	KNOWN	protein_coding	STEAP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	57316415	57343606	R	Metalloreductase STEAP2 isoform b {ECO:0000313|EMBL:JAB05750.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042476}  [Source:UniProtKB/TrEMBL;Acc:F6Z7F1]
ENSCJAG00000011834	KNOWN_BY_PROJECTION	protein_coding	NUDT14	chromosome:C_jacchus3.2.1:10:1:132174527:1	131217874	131226655	R	nudix (nucleoside diphosphate linked moiety X)-type motif 14 [Source:HGNC Symbol;Acc:HGNC:20141]
ENSCJAG00000014277	NOVEL	protein_coding	ENSCJAG00000014277	chromosome:C_jacchus3.2.1:8:1:128169293:1	57400384	57411189	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048758}  [Source:UniProtKB/TrEMBL;Acc:F6QJB2]
ENSCJAG00000014282	KNOWN_BY_PROJECTION	protein_coding	ZNF804B	chromosome:C_jacchus3.2.1:8:1:128169293:1	58333854	58445733	R	zinc finger protein 804B [Source:HGNC Symbol;Acc:HGNC:21958]
ENSCJAG00000014284	KNOWN_BY_PROJECTION	protein_coding	C7orf62	chromosome:C_jacchus3.2.1:8:1:128169293:1	58874656	58876263	D	chromosome 7 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:22402]
ENSCJAG00000014286	NOVEL	pseudogene	ENSCJAG00000014286	chromosome:C_jacchus3.2.1:8:1:128169293:1	59056063	59057429	R	<no descrition>
ENSCJAG00000013914	NOVEL	protein_coding	ENSCJAG00000013914	chromosome:C_jacchus3.2.1:8:1:128169293:1	59145075	59146953	D	Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673}  [Source:UniProtKB/TrEMBL;Acc:F6X5G8]
ENSCJAG00000014290	KNOWN	protein_coding	STEAP4	chromosome:C_jacchus3.2.1:8:1:128169293:1	59407946	59447031	D	Metalloreductase STEAP4 isoform 1 {ECO:0000313|EMBL:JAB05216.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026275}  [Source:UniProtKB/TrEMBL;Acc:F7IQW3]
ENSCJAG00000019730	KNOWN_BY_PROJECTION	protein_coding	BRF1	chromosome:C_jacchus3.2.1:10:1:132174527:1	131264634	131346086	R	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit [Source:HGNC Symbol;Acc:HGNC:11551]
ENSCJAG00000014298	KNOWN	protein_coding	SRI	chromosome:C_jacchus3.2.1:8:1:128169293:1	59495509	59517787	D	Sorcin isoform A {ECO:0000313|EMBL:JAB08132.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026293}  [Source:UniProtKB/TrEMBL;Acc:F7INJ3]
ENSCJAG00000021068	KNOWN_BY_PROJECTION	protein_coding	FGF14	chromosome:C_jacchus3.2.1:1:1:210400635:1	16928986	17138410	R	fibroblast growth factor 14 [Source:HGNC Symbol;Acc:HGNC:3671]
ENSCJAG00000035028	NOVEL	protein_coding	ENSCJAG00000035028	chromosome:C_jacchus3.2.1:1:1:210400635:1	17198131	17199269	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043705}  [Source:UniProtKB/TrEMBL;Acc:F7HYB0]
ENSCJAG00000020115	KNOWN	protein_coding	TPP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	17952111	18033192	D	Tripeptidyl-peptidase 2 {ECO:0000313|EMBL:JAB02086.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037454}  [Source:UniProtKB/TrEMBL;Acc:F7BZ13]
ENSCJAG00000014311	KNOWN	protein_coding	ADAM22	chromosome:C_jacchus3.2.1:8:1:128169293:1	59526143	59831958	R	Disintegrin and metalloproteinase domain-containing protein 22 isoform 1 preproprotein {ECO:0000313|EMBL:JAB18766.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026487}  [Source:UniProtKB/TrEMBL;Acc:F7IQU2]
ENSCJAG00000019754	KNOWN	protein_coding	BTBD6	chromosome:C_jacchus3.2.1:10:1:132174527:1	131302974	131306515	D	BTB/POZ domain-containing protein 6 {ECO:0000313|EMBL:JAB16014.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048186}  [Source:UniProtKB/TrEMBL;Acc:F7GYH0]
ENSCJAG00000019763	KNOWN_BY_PROJECTION	protein_coding	PACS2	chromosome:C_jacchus3.2.1:10:1:132174527:1	131430367	131455617	D	phosphofurin acidic cluster sorting protein 2 [Source:HGNC Symbol;Acc:HGNC:23794]
ENSCJAG00000019779	KNOWN_BY_PROJECTION	protein_coding	TEX22	chromosome:C_jacchus3.2.1:10:1:132174527:1	131463829	131477971	D	testis expressed 22 [Source:HGNC Symbol;Acc:HGNC:40026]
ENSCJAG00000019780	KNOWN_BY_PROJECTION	protein_coding	MTA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	131514350	131547283	D	metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
ENSCJAG00000020113	KNOWN_BY_PROJECTION	protein_coding	METTL21C	chromosome:C_jacchus3.2.1:1:1:210400635:1	18038305	18046783	R	methyltransferase like 21C [Source:HGNC Symbol;Acc:HGNC:33717]
ENSCJAG00000020112	NOVEL	pseudogene	ENSCJAG00000020112	chromosome:C_jacchus3.2.1:1:1:210400635:1	18075624	18076018	D	<no descrition>
ENSCJAG00000014413	KNOWN_BY_PROJECTION	protein_coding	DBF4	chromosome:C_jacchus3.2.1:8:1:128169293:1	59859570	59897265	R	DBF4 zinc finger [Source:HGNC Symbol;Acc:HGNC:17364]
ENSCJAG00000020102	KNOWN	protein_coding	TEX30	chromosome:C_jacchus3.2.1:1:1:210400635:1	18125272	18129476	R	Testis-expressed sequence 30 protein {ECO:0000313|EMBL:JAB05764.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037371}  [Source:UniProtKB/TrEMBL;Acc:F6YH89]
ENSCJAG00000019783	KNOWN	protein_coding	CRIP2	chromosome:C_jacchus3.2.1:10:1:132174527:1	131557321	131558621	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036785}  [Source:UniProtKB/TrEMBL;Acc:F6QJ59]
ENSCJAG00000020091	KNOWN	protein_coding	KDELC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	18144337	18158058	R	KDEL motif-containing protein 1 {ECO:0000313|EMBL:JAB08019.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037359}  [Source:UniProtKB/TrEMBL;Acc:F6ZGE3]
ENSCJAG00000014451	KNOWN	protein_coding	SLC25A40	chromosome:C_jacchus3.2.1:8:1:128169293:1	59897144	59947044	D	Solute carrier family 25 member 40 {ECO:0000313|EMBL:JAB01626.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026629}  [Source:UniProtKB/TrEMBL;Acc:F7HZU5]
ENSCJAG00000019788	KNOWN	protein_coding	CRIP1	chromosome:C_jacchus3.2.1:10:1:132174527:1	131566160	131567898	D	Cysteine-rich protein 1 {ECO:0000313|EMBL:JAB23467.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036792}  [Source:UniProtKB/TrEMBL;Acc:F6Q9I2]
ENSCJAG00000014488	KNOWN	protein_coding	RUNDC3B	chromosome:C_jacchus3.2.1:8:1:128169293:1	59952933	60155223	R	RUN domain-containing protein 3B isoform a {ECO:0000313|EMBL:JAB50701.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026717}  [Source:UniProtKB/TrEMBL;Acc:F7IN89]
ENSCJAG00000019791	KNOWN	protein_coding	C14ORF80	chromosome:C_jacchus3.2.1:10:1:132174527:1	131571234	131581373	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036800}  [Source:UniProtKB/TrEMBL;Acc:F6U7W0]
ENSCJAG00000020081	KNOWN_BY_PROJECTION	protein_coding	BIVM	chromosome:C_jacchus3.2.1:1:1:210400635:1	18158185	18192318	D	basic, immunoglobulin-like variable motif containing [Source:HGNC Symbol;Acc:HGNC:16034]
ENSCJAG00000006338	KNOWN	protein_coding	TMEM121	chromosome:C_jacchus3.2.1:10:1:132174527:1	131596563	131598110	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011675}  [Source:UniProtKB/TrEMBL;Acc:F7HD03]
ENSCJAG00000014528	KNOWN	protein_coding	ABCB1	chromosome:C_jacchus3.2.1:8:1:128169293:1	60059734	60303311	D	Multidrug resistance protein 1 {ECO:0000313|EMBL:JAB16366.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026904}  [Source:UniProtKB/TrEMBL;Acc:F7HUX3]
ENSCJAG00000000003	NOVEL	protein_coding	ENSCJAG00000000003	chromosome:C_jacchus3.2.1:10:1:132174527:1	131630877	132156370	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047488}  [Source:UniProtKB/TrEMBL;Acc:F7IDD4]
ENSCJAG00000020073	NOVEL	protein_coding	ENSCJAG00000020073	chromosome:C_jacchus3.2.1:1:1:210400635:1	18200115	18231904	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037328}  [Source:UniProtKB/TrEMBL;Acc:F7AHA0]
ENSCJAG00000014623	KNOWN_BY_PROJECTION	protein_coding	ABCB4	chromosome:C_jacchus3.2.1:8:1:128169293:1	60338430	60400276	D	ATP-binding cassette, sub-family B (MDR/TAP), member 4 [Source:HGNC Symbol;Acc:HGNC:45]
ENSCJAG00000000002	KNOWN_BY_PROJECTION	protein_coding	IGHE	chromosome:C_jacchus3.2.1:10:1:132174527:1	131641792	131646673	R	immunoglobulin heavy constant epsilon [Source:HGNC Symbol;Acc:HGNC:5522]
ENSCJAG00000034962	NOVEL	protein_coding	ENSCJAG00000034962	chromosome:C_jacchus3.2.1:10:1:132174527:1	131763322	131763882	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045404}  [Source:UniProtKB/TrEMBL;Acc:F6RLG4]
ENSCJAG00000032956	NOVEL	protein_coding	ENSCJAG00000032956	chromosome:C_jacchus3.2.1:10:1:132174527:1	131826835	131827088	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006392}  [Source:UniProtKB/TrEMBL;Acc:F7D0M8]
ENSCJAG00000037889	NOVEL	protein_coding	ENSCJAG00000037889	chromosome:C_jacchus3.2.1:10:1:132174527:1	131942964	132061184	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052101}  [Source:UniProtKB/TrEMBL;Acc:F7I2T2]
ENSCJAG00000003542	NOVEL	protein_coding	ENSCJAG00000003542	chromosome:C_jacchus3.2.1:10:1:132174527:1	132029081	132030252	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006413}  [Source:UniProtKB/TrEMBL;Acc:F7HBE9]
ENSCJAG00000003538	NOVEL	protein_coding	ENSCJAG00000003538	chromosome:C_jacchus3.2.1:10:1:132174527:1	132077472	132077901	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006406}  [Source:UniProtKB/TrEMBL;Acc:F7HBH5]
ENSCJAG00000037466	NOVEL	protein_coding	ENSCJAG00000037466	chromosome:C_jacchus3.2.1:10:1:132174527:1	132109888	132120170	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052127}  [Source:UniProtKB/TrEMBL;Acc:F7I2P4]
ENSCJAG00000038064	KNOWN_BY_PROJECTION	protein_coding	IGHV7-81	chromosome:C_jacchus3.2.1:10:1:132174527:1	132148953	132149387	R	immunoglobulin heavy variable 7-81 (non-functional) [Source:HGNC Symbol;Acc:HGNC:5669]
ENSCJAG00000031446	NOVEL	protein_coding	ENSCJAG00000031446	chromosome:C_jacchus3.2.1:10:1:132174527:1	132158609	132159039	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015916}  [Source:UniProtKB/TrEMBL;Acc:F7EJQ5]
ENSCJAG00000007013	NOVEL	protein_coding	ENSCJAG00000007013	scaffold:C_jacchus3.2.1:ACFV01181484.1:1:20582:1	3573	5942	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012992}  [Source:UniProtKB/TrEMBL;Acc:H9KWC9]
ENSCJAG00000014683	KNOWN	protein_coding	CROT	chromosome:C_jacchus3.2.1:8:1:128169293:1	60424718	60483166	R	Peroxisomal carnitine O-octanoyltransferase isoform 2 {ECO:0000313|EMBL:JAB11104.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027089}  [Source:UniProtKB/TrEMBL;Acc:F7ENF8]
ENSCJAG00000003804	KNOWN	protein_coding	BIRC2	chromosome:C_jacchus3.2.1:11:1:130397257:1	43461	61664	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006902}  [Source:UniProtKB/TrEMBL;Acc:F7H5P0]
ENSCJAG00000020064	NOVEL	protein_coding	ENSCJAG00000020064	chromosome:C_jacchus3.2.1:1:1:210400635:1	18249400	18253601	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037315}  [Source:UniProtKB/TrEMBL;Acc:F7B0H2]
ENSCJAG00000003801	KNOWN_BY_PROJECTION	protein_coding	TMEM123	chromosome:C_jacchus3.2.1:11:1:130397257:1	80229	140404	R	transmembrane protein 123 [Source:HGNC Symbol;Acc:HGNC:30138]
ENSCJAG00000020061	KNOWN_BY_PROJECTION	protein_coding	SLC10A2	chromosome:C_jacchus3.2.1:1:1:210400635:1	18411809	18430520	R	solute carrier family 10 (sodium/bile acid cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:10906]
ENSCJAG00000003793	KNOWN_BY_PROJECTION	protein_coding	MMP7	chromosome:C_jacchus3.2.1:11:1:130397257:1	207844	217128	R	matrix metallopeptidase 7 (matrilysin, uterine) [Source:HGNC Symbol;Acc:HGNC:7174]
ENSCJAG00000014724	KNOWN_BY_PROJECTION	protein_coding	TMEM243	chromosome:C_jacchus3.2.1:8:1:128169293:1	60611202	60638424	D	transmembrane protein 243, mitochondrial [Source:HGNC Symbol;Acc:HGNC:21707]
ENSCJAG00000014720	KNOWN_BY_PROJECTION	protein_coding	DAOA	chromosome:C_jacchus3.2.1:1:1:210400635:1	20756044	20762714	D	D-amino acid oxidase activator [Source:HGNC Symbol;Acc:HGNC:21191]
ENSCJAG00000014704	KNOWN	protein_coding	EFNB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	21806022	21851176	R	Ephrin-B2 {ECO:0000313|EMBL:JAB10549.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027080}  [Source:UniProtKB/TrEMBL;Acc:F7ENK8]
ENSCJAG00000014730	KNOWN	protein_coding	DMTF1	chromosome:C_jacchus3.2.1:8:1:128169293:1	60638258	60683959	R	Cyclin-D-binding Myb-like transcription factor 1 isoform a {ECO:0000313|EMBL:JAB09927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049268}  [Source:UniProtKB/TrEMBL;Acc:F6UB89]
ENSCJAG00000003781	KNOWN_BY_PROJECTION	protein_coding	MMP20	chromosome:C_jacchus3.2.1:11:1:130397257:1	256079	301595	R	matrix metallopeptidase 20 [Source:HGNC Symbol;Acc:HGNC:7167]
ENSCJAG00000003769	KNOWN_BY_PROJECTION	protein_coding	MMP27	chromosome:C_jacchus3.2.1:11:1:130397257:1	384259	400464	R	matrix metallopeptidase 27 [Source:HGNC Symbol;Acc:HGNC:14250]
ENSCJAG00000037145	NOVEL	protein_coding	ENSCJAG00000037145	chromosome:C_jacchus3.2.1:8:1:128169293:1	60683426	60684025	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006553}  [Source:UniProtKB/TrEMBL;Acc:F7EQC7]
ENSCJAG00000014700	KNOWN	protein_coding	ARGLU1	chromosome:C_jacchus3.2.1:1:1:210400635:1	21859651	21884147	R	Arginine and glutamate-rich protein 1 {ECO:0000313|EMBL:JAB22744.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027045}  [Source:UniProtKB/TrEMBL;Acc:F7FFN5]
ENSCJAG00000033946	NOVEL	pseudogene	ENSCJAG00000033946	chromosome:C_jacchus3.2.1:1:1:210400635:1	22208955	22209417	R	<no descrition>
ENSCJAG00000031904	NOVEL	protein_coding	ENSCJAG00000031904	chromosome:C_jacchus3.2.1:1:1:210400635:1	22501211	22543222	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042096}  [Source:UniProtKB/TrEMBL;Acc:F6R6C1]
ENSCJAG00000003589	KNOWN_BY_PROJECTION	protein_coding	KIAA1324L	chromosome:C_jacchus3.2.1:8:1:128169293:1	60773334	60957726	D	KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
ENSCJAG00000003743	KNOWN_BY_PROJECTION	protein_coding	MMP8	chromosome:C_jacchus3.2.1:11:1:130397257:1	407466	420043	R	matrix metallopeptidase 8 (neutrophil collagenase) [Source:HGNC Symbol;Acc:HGNC:7175]
ENSCJAG00000014696	KNOWN_BY_PROJECTION	protein_coding	FAM155A	chromosome:C_jacchus3.2.1:1:1:210400635:1	23182385	23183347	R	family with sequence similarity 155, member A [Source:HGNC Symbol;Acc:HGNC:33877]
ENSCJAG00000014690	NOVEL	pseudogene	ENSCJAG00000014690	chromosome:C_jacchus3.2.1:1:1:210400635:1	23466752	23467461	D	<no descrition>
ENSCJAG00000003618	NOVEL	protein_coding	ENSCJAG00000003618	chromosome:C_jacchus3.2.1:8:1:128169293:1	60773546	60774888	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051242}  [Source:UniProtKB/TrEMBL;Acc:F6VKU5]
ENSCJAG00000014689	KNOWN_BY_PROJECTION	protein_coding	LIG4	chromosome:C_jacchus3.2.1:1:1:210400635:1	23524394	23536991	R	ligase IV, DNA, ATP-dependent [Source:HGNC Symbol;Acc:HGNC:6601]
ENSCJAG00000014685	KNOWN_BY_PROJECTION	protein_coding	ABHD13	chromosome:C_jacchus3.2.1:1:1:210400635:1	23537247	23550531	D	abhydrolase domain containing 13 [Source:HGNC Symbol;Acc:HGNC:20293]
ENSCJAG00000014666	KNOWN_BY_PROJECTION	protein_coding	TNFSF13B	chromosome:C_jacchus3.2.1:1:1:210400635:1	23586217	23620721	D	tumor necrosis factor (ligand) superfamily, member 13b [Source:HGNC Symbol;Acc:HGNC:11929]
ENSCJAG00000003556	KNOWN_BY_PROJECTION	protein_coding	GRM3	chromosome:C_jacchus3.2.1:8:1:128169293:1	60980303	61213605	R	glutamate receptor, metabotropic 3 [Source:HGNC Symbol;Acc:HGNC:4595]
ENSCJAG00000016298	KNOWN_BY_PROJECTION	protein_coding	MMP10	chromosome:C_jacchus3.2.1:11:1:130397257:1	473086	484400	R	matrix metallopeptidase 10 (stromelysin 2) [Source:HGNC Symbol;Acc:HGNC:7156]
ENSCJAG00000003550	NOVEL	pseudogene	ENSCJAG00000003550	chromosome:C_jacchus3.2.1:8:1:128169293:1	61967983	61968473	D	<no descrition>
ENSCJAG00000003522	KNOWN_BY_PROJECTION	protein_coding	SEMA3D	chromosome:C_jacchus3.2.1:8:1:128169293:1	62772801	62912678	D	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:HGNC:10726]
ENSCJAG00000038052	KNOWN_BY_PROJECTION	protein_coding	MMP3	chromosome:C_jacchus3.2.1:11:1:130397257:1	509611	518280	R	matrix metallopeptidase 3 (stromelysin 1, progelatinase) [Source:HGNC Symbol;Acc:HGNC:7173]
ENSCJAG00000003548	NOVEL	protein_coding	ENSCJAG00000003548	chromosome:C_jacchus3.2.1:8:1:128169293:1	62878315	62879983	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006424}  [Source:UniProtKB/TrEMBL;Acc:F7H6D6]
ENSCJAG00000003478	KNOWN	protein_coding	SEMA3A	chromosome:C_jacchus3.2.1:8:1:128169293:1	63698665	63927785	D	Semaphorin-3A {ECO:0000313|EMBL:JAB06545.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006379}  [Source:UniProtKB/TrEMBL;Acc:F7DYT5]
ENSCJAG00000003520	NOVEL	pseudogene	ENSCJAG00000003520	chromosome:C_jacchus3.2.1:8:1:128169293:1	63768301	63769250	R	<no descrition>
ENSCJAG00000014617	KNOWN_BY_PROJECTION	protein_coding	MYO16	chromosome:C_jacchus3.2.1:1:1:210400635:1	23938064	24580207	D	myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
ENSCJAG00000003462	KNOWN	protein_coding	SEMA3E	chromosome:C_jacchus3.2.1:8:1:128169293:1	64223469	64503330	D	Semaphorin-3E isoform 1 {ECO:0000313|EMBL:JAB09297.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050988}  [Source:UniProtKB/TrEMBL;Acc:F6SQ35]
ENSCJAG00000009452	KNOWN_BY_PROJECTION	protein_coding	MMP12	chromosome:C_jacchus3.2.1:11:1:130397257:1	538535	550540	R	matrix metallopeptidase 12 (macrophage elastase) [Source:HGNC Symbol;Acc:HGNC:7158]
ENSCJAG00000014608	KNOWN_BY_PROJECTION	protein_coding	IRS2	chromosome:C_jacchus3.2.1:1:1:210400635:1	24946095	25121837	R	insulin receptor substrate 2 [Source:HGNC Symbol;Acc:HGNC:6126]
ENSCJAG00000034151	NOVEL	protein_coding	ENSCJAG00000034151	chromosome:C_jacchus3.2.1:8:1:128169293:1	64650418	64679033	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006256}  [Source:UniProtKB/TrEMBL;Acc:F7GW47]
ENSCJAG00000003444	NOVEL	protein_coding	ENSCJAG00000003444	chromosome:C_jacchus3.2.1:8:1:128169293:1	64843841	65072832	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006281}  [Source:UniProtKB/TrEMBL;Acc:F7GJN4]
ENSCJAG00000032875	NOVEL	pseudogene	ENSCJAG00000032875	chromosome:C_jacchus3.2.1:8:1:128169293:1	65237709	65238085	D	<no descrition>
ENSCJAG00000015625	NOVEL	pseudogene	ENSCJAG00000015625	chromosome:C_jacchus3.2.1:8:1:128169293:1	65377212	65377801	D	<no descrition>
ENSCJAG00000031605	NOVEL	protein_coding	ENSCJAG00000031605	chromosome:C_jacchus3.2.1:8:1:128169293:1	65487443	65506634	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045685}  [Source:UniProtKB/TrEMBL;Acc:F6PS21]
ENSCJAG00000034653	NOVEL	protein_coding	ENSCJAG00000034653	chromosome:C_jacchus3.2.1:8:1:128169293:1	65719475	65789299	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042601}  [Source:UniProtKB/TrEMBL;Acc:F7BQV7]
ENSCJAG00000003397	KNOWN_BY_PROJECTION	protein_coding	CACNA2D1	chromosome:C_jacchus3.2.1:8:1:128169293:1	65830662	65895363	D	calcium channel, voltage-dependent, alpha 2/delta subunit 1 [Source:HGNC Symbol;Acc:HGNC:1399]
ENSCJAG00000014430	KNOWN_BY_PROJECTION	protein_coding	COL4A1	chromosome:C_jacchus3.2.1:1:1:210400635:1	25496934	25652842	R	collagen, type IV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2202]
ENSCJAG00000003339	KNOWN_BY_PROJECTION	protein_coding	HGF	chromosome:C_jacchus3.2.1:8:1:128169293:1	66096913	66169477	D	hepatocyte growth factor (hepapoietin A; scatter factor) [Source:HGNC Symbol;Acc:HGNC:4893]
ENSCJAG00000003334	NOVEL	pseudogene	ENSCJAG00000003334	chromosome:C_jacchus3.2.1:8:1:128169293:1	66397896	66398762	R	<no descrition>
ENSCJAG00000003297	KNOWN	protein_coding	SEMA3C	chromosome:C_jacchus3.2.1:8:1:128169293:1	67005126	67181559	D	Semaphorin-3C {ECO:0000313|EMBL:JAB10560.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006040}  [Source:UniProtKB/TrEMBL;Acc:F7H1L4]
ENSCJAG00000009477	KNOWN_BY_PROJECTION	protein_coding	MMP13	chromosome:C_jacchus3.2.1:11:1:130397257:1	617647	632489	R	matrix metallopeptidase 13 (collagenase 3) [Source:HGNC Symbol;Acc:HGNC:7159]
ENSCJAG00000003294	NOVEL	pseudogene	ENSCJAG00000003294	chromosome:C_jacchus3.2.1:8:1:128169293:1	67248441	67248922	R	<no descrition>
ENSCJAG00000009502	KNOWN	protein_coding	DCUN1D5	chromosome:C_jacchus3.2.1:11:1:130397257:1	744276	770896	R	DCN1-like protein {ECO:0000256|RuleBase:RU410713}  [Source:UniProtKB/TrEMBL;Acc:F7HLA4]
ENSCJAG00000003269	KNOWN	protein_coding	CD36	chromosome:C_jacchus3.2.1:8:1:128169293:1	67252090	67332523	R	Platelet glycoprotein 4 {ECO:0000313|EMBL:JAB10814.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005979}  [Source:UniProtKB/TrEMBL;Acc:F7I9Q6]
ENSCJAG00000009549	KNOWN_BY_PROJECTION	protein_coding	DYNC2H1	chromosome:C_jacchus3.2.1:11:1:130397257:1	788072	1160270	D	dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
ENSCJAG00000009788	KNOWN	protein_coding	PDGFD	chromosome:C_jacchus3.2.1:11:1:130397257:1	1522693	1759485	R	Platelet-derived growth factor D isoform 1 {ECO:0000313|EMBL:JAB45750.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017962}  [Source:UniProtKB/TrEMBL;Acc:F7I9M6]
ENSCJAG00000003257	KNOWN_BY_PROJECTION	protein_coding	GNAT3	chromosome:C_jacchus3.2.1:8:1:128169293:1	67397128	67454000	D	guanine nucleotide binding protein, alpha transducing 3 [Source:HGNC Symbol;Acc:HGNC:22800]
ENSCJAG00000009805	KNOWN	protein_coding	CASP4	chromosome:C_jacchus3.2.1:11:1:130397257:1	2488843	2554814	R	Caspase {ECO:0000256|PIRNR:PIRNR038001}  [Source:UniProtKB/TrEMBL;Acc:F7GRC1]
ENSCJAG00000003237	KNOWN	protein_coding	GNAI1	chromosome:C_jacchus3.2.1:8:1:128169293:1	67697735	67784689	R	Guanine nucleotide-binding protein G(I) subunit alpha-1 isoform 1 {ECO:0000313|EMBL:JAB11107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005913}  [Source:UniProtKB/TrEMBL;Acc:F7IGR5]
ENSCJAG00000006304	KNOWN_BY_PROJECTION	protein_coding	MAGI2	chromosome:C_jacchus3.2.1:8:1:128169293:1	69496791	70091249	D	membrane associated guanylate kinase, WW and PDZ domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18957]
ENSCJAG00000009842	KNOWN_BY_PROJECTION	protein_coding	CASP1	chromosome:C_jacchus3.2.1:11:1:130397257:1	2549669	2615034	R	caspase 1, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:1499]
ENSCJAG00000006202	KNOWN	protein_coding	PHTF2	chromosome:C_jacchus3.2.1:8:1:128169293:1	70158486	70328226	R	Putative homeodomain transcription factor 2 isoform 2 {ECO:0000313|EMBL:JAB09080.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011564}  [Source:UniProtKB/TrEMBL;Acc:F7I8K8]
ENSCJAG00000014238	KNOWN_BY_PROJECTION	protein_coding	COL4A2	chromosome:C_jacchus3.2.1:1:1:210400635:1	25652976	25866475	D	collagen, type IV, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2203]
ENSCJAG00000006289	NOVEL	pseudogene	ENSCJAG00000006289	chromosome:C_jacchus3.2.1:8:1:128169293:1	70282891	70284182	D	<no descrition>
ENSCJAG00000006198	KNOWN	protein_coding	TMEM60	chromosome:C_jacchus3.2.1:8:1:128169293:1	70328590	70333395	D	Transmembrane protein 60 {ECO:0000313|EMBL:JAB01849.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011380}  [Source:UniProtKB/TrEMBL;Acc:F7I406]
ENSCJAG00000006177	KNOWN	protein_coding	RSBN1L	chromosome:C_jacchus3.2.1:8:1:128169293:1	70415147	70490592	R	Round spermatid basic protein 1-like protein {ECO:0000313|EMBL:JAB04264.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011363}  [Source:UniProtKB/TrEMBL;Acc:F7I6G4]
ENSCJAG00000021995	KNOWN_BY_PROJECTION	protein_coding	CARD18	chromosome:C_jacchus3.2.1:11:1:130397257:1	2630005	2631336	R	caspase recruitment domain family, member 18 [Source:HGNC Symbol;Acc:HGNC:28861]
ENSCJAG00000009874	KNOWN_BY_PROJECTION	protein_coding	GRIA4	chromosome:C_jacchus3.2.1:11:1:130397257:1	3080285	3476221	D	glutamate receptor, ionotropic, AMPA 4 [Source:HGNC Symbol;Acc:HGNC:4574]
ENSCJAG00000009913	KNOWN	protein_coding	KIAA1826	chromosome:C_jacchus3.2.1:11:1:130397257:1	3497286	3510041	R	Myb/SANT-like DNA-binding domain-containing protein 4 {ECO:0000313|EMBL:JAB10487.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018200}  [Source:UniProtKB/TrEMBL;Acc:F7H1J7]
ENSCJAG00000006056	KNOWN	protein_coding	PTPN12	chromosome:C_jacchus3.2.1:8:1:128169293:1	70544052	70651716	R	Tyrosine-protein phosphatase non-receptor type 12 isoform 1 {ECO:0000313|EMBL:JAB31282.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011325}  [Source:UniProtKB/TrEMBL;Acc:F7IB84]
ENSCJAG00000009921	KNOWN	protein_coding	KBTBD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	3541037	3566019	R	Kelch repeat and BTB domain-containing protein 3 {ECO:0000313|EMBL:JAB06774.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020236}  [Source:UniProtKB/TrEMBL;Acc:F7ET45]
ENSCJAG00000009930	KNOWN_BY_PROJECTION	protein_coding	AASDHPPT	chromosome:C_jacchus3.2.1:11:1:130397257:1	3565823	3587485	D	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:HGNC Symbol;Acc:HGNC:14235]
ENSCJAG00000035709	NOVEL	protein_coding	ENSCJAG00000035709	chromosome:C_jacchus3.2.1:1:1:210400635:1	25812271	25813451	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052462}  [Source:UniProtKB/TrEMBL;Acc:F7I2E2]
ENSCJAG00000014236	KNOWN	protein_coding	RAB20	chromosome:C_jacchus3.2.1:1:1:210400635:1	25881741	25918475	R	Ras-related protein Rab-20 {ECO:0000313|EMBL:JAB09997.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026180}  [Source:UniProtKB/TrEMBL;Acc:F7I4S1]
ENSCJAG00000014207	KNOWN	protein_coding	CARKD	chromosome:C_jacchus3.2.1:1:1:210400635:1	25969821	25994250	D	ATP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_03157}  [Source:UniProtKB/TrEMBL;Acc:F7I9H7]
ENSCJAG00000014187	KNOWN_BY_PROJECTION	protein_coding	CARS2	chromosome:C_jacchus3.2.1:1:1:210400635:1	25997138	26060333	R	cysteinyl-tRNA synthetase 2, mitochondrial (putative) [Source:HGNC Symbol;Acc:HGNC:25695]
ENSCJAG00000006020	KNOWN	protein_coding	GSAP	chromosome:C_jacchus3.2.1:8:1:128169293:1	70797171	70915655	D	Gamma-secretase-activating protein {ECO:0000313|EMBL:JAB04060.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043456}  [Source:UniProtKB/TrEMBL;Acc:F7I7X6]
ENSCJAG00000009948	KNOWN_BY_PROJECTION	protein_coding	GUCY1A2	chromosome:C_jacchus3.2.1:11:1:130397257:1	4189227	4488388	R	guanylate cyclase 1, soluble, alpha 2 [Source:HGNC Symbol;Acc:HGNC:4684]
ENSCJAG00000009951	KNOWN_BY_PROJECTION	protein_coding	CWF19L2	chromosome:C_jacchus3.2.1:11:1:130397257:1	4779941	4911112	R	CWF19-like 2, cell cycle control (S. pombe) [Source:HGNC Symbol;Acc:HGNC:26508]
ENSCJAG00000009957	KNOWN_BY_PROJECTION	protein_coding	ALKBH8	chromosome:C_jacchus3.2.1:11:1:130397257:1	4960393	5026236	R	alkB, alkylation repair homolog 8 (E. coli) [Source:HGNC Symbol;Acc:HGNC:25189]
ENSCJAG00000005976	KNOWN	protein_coding	CCDC146	chromosome:C_jacchus3.2.1:8:1:128169293:1	70940316	71139552	R	Coiled-coil domain-containing protein 146 {ECO:0000313|EMBL:JAB14173.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011031}  [Source:UniProtKB/TrEMBL;Acc:F7IKQ2]
ENSCJAG00000006012	KNOWN	protein_coding	FGL2	chromosome:C_jacchus3.2.1:8:1:128169293:1	71059039	71065936	D	Fibroleukin {ECO:0000313|EMBL:JAB24317.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011052}  [Source:UniProtKB/TrEMBL;Acc:F7IID7]
ENSCJAG00000009974	KNOWN	protein_coding	ELMOD1	chromosome:C_jacchus3.2.1:11:1:130397257:1	5052097	5132101	D	ELMO domain-containing protein 1 isoform 2 {ECO:0000313|EMBL:JAB05137.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018376}  [Source:UniProtKB/TrEMBL;Acc:F7D066]
ENSCJAG00000021233	KNOWN_BY_PROJECTION	protein_coding	FAM185A	chromosome:C_jacchus3.2.1:8:1:128169293:1	71140050	71213301	D	family with sequence similarity 185, member A [Source:HGNC Symbol;Acc:HGNC:22412]
ENSCJAG00000021242	NOVEL	pseudogene	ENSCJAG00000021242	chromosome:C_jacchus3.2.1:8:1:128169293:1	71146246	71147040	D	<no descrition>
ENSCJAG00000014181	NOVEL	pseudogene	ENSCJAG00000014181	chromosome:C_jacchus3.2.1:1:1:210400635:1	26057128	26057593	R	<no descrition>
ENSCJAG00000014168	KNOWN_BY_PROJECTION	protein_coding	ING1	chromosome:C_jacchus3.2.1:1:1:210400635:1	26059466	26067370	D	inhibitor of growth family, member 1 [Source:HGNC Symbol;Acc:HGNC:6062]
ENSCJAG00000010008	NOVEL	protein_coding	ENSCJAG00000010008	chromosome:C_jacchus3.2.1:11:1:130397257:1	5052723	5054238	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018388}  [Source:UniProtKB/TrEMBL;Acc:F7HGV5]
ENSCJAG00000010015	NOVEL	protein_coding	ENSCJAG00000010015	chromosome:C_jacchus3.2.1:11:1:130397257:1	5172629	5177355	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018400}  [Source:UniProtKB/TrEMBL;Acc:F7H6B8]
ENSCJAG00000021213	KNOWN_BY_PROJECTION	protein_coding	FBXL13	chromosome:C_jacchus3.2.1:8:1:128169293:1	71223357	71532265	R	F-box and leucine-rich repeat protein 13 [Source:HGNC Symbol;Acc:HGNC:21658]
ENSCJAG00000014141	KNOWN	protein_coding	ANKRD10	chromosome:C_jacchus3.2.1:1:1:210400635:1	26230270	26265598	R	Ankyrin repeat domain-containing protein 10 {ECO:0000313|EMBL:JAB02768.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026043}  [Source:UniProtKB/TrEMBL;Acc:F7HVH5]
ENSCJAG00000010021	NOVEL	pseudogene	ENSCJAG00000010021	chromosome:C_jacchus3.2.1:11:1:130397257:1	5233959	5234262	R	<no descrition>
ENSCJAG00000021231	NOVEL	pseudogene	ENSCJAG00000021231	chromosome:C_jacchus3.2.1:8:1:128169293:1	71332915	71334758	D	<no descrition>
ENSCJAG00000010035	KNOWN_BY_PROJECTION	protein_coding	SLC35F2	chromosome:C_jacchus3.2.1:11:1:130397257:1	5264001	5330721	R	solute carrier family 35, member F2 [Source:HGNC Symbol;Acc:HGNC:23615]
ENSCJAG00000021225	KNOWN_BY_PROJECTION	protein_coding	LRRC17	chromosome:C_jacchus3.2.1:8:1:128169293:1	71364330	71395105	D	leucine rich repeat containing 17 [Source:HGNC Symbol;Acc:HGNC:16895]
ENSCJAG00000010058	KNOWN_BY_PROJECTION	protein_coding	RAB39A	chromosome:C_jacchus3.2.1:11:1:130397257:1	5390094	5426917	D	RAB39A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:16521]
ENSCJAG00000021208	KNOWN	protein_coding	ARMC10	chromosome:C_jacchus3.2.1:8:1:128169293:1	71532567	71551047	D	Armadillo repeat-containing protein 10 isoform b {ECO:0000313|EMBL:JAB32312.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039495}  [Source:UniProtKB/TrEMBL;Acc:F7FDQ4]
ENSCJAG00000021207	KNOWN	protein_coding	NAPEPLD	chromosome:C_jacchus3.2.1:8:1:128169293:1	71551626	71599481	R	N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D {ECO:0000313|EMBL:JAB07133.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045129}  [Source:UniProtKB/TrEMBL;Acc:F6SBA6]
ENSCJAG00000021206	NOVEL	protein_coding	ENSCJAG00000021206	chromosome:C_jacchus3.2.1:8:1:128169293:1	71602102	71602551	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039481}  [Source:UniProtKB/TrEMBL;Acc:F7FDX2]
ENSCJAG00000010059	KNOWN	protein_coding	CUL5	chromosome:C_jacchus3.2.1:11:1:130397257:1	5452937	5566254	D	Cullin-5 {ECO:0000313|EMBL:JAB06567.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018606}  [Source:UniProtKB/TrEMBL;Acc:F7HB45]
ENSCJAG00000021200	KNOWN	protein_coding	ENSCJAG00000021200	chromosome:C_jacchus3.2.1:8:1:128169293:1	71670800	71687645	D	Mitochondrial-processing peptidase subunit beta {ECO:0000313|EMBL:JAB02865.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039480}  [Source:UniProtKB/TrEMBL;Acc:F7FDX7]
ENSCJAG00000014093	KNOWN_BY_PROJECTION	protein_coding	ARHGEF7	chromosome:C_jacchus3.2.1:1:1:210400635:1	26462281	26644318	D	Rho guanine nucleotide exchange factor (GEF) 7 [Source:HGNC Symbol;Acc:HGNC:15607]
ENSCJAG00000021179	KNOWN	protein_coding	DNAJC2	chromosome:C_jacchus3.2.1:8:1:128169293:1	71686818	71722921	R	DnaJ homolog subfamily C member 2 isoform 1 {ECO:0000313|EMBL:JAB30495.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039468}  [Source:UniProtKB/TrEMBL;Acc:F7FEF2]
ENSCJAG00000010127	KNOWN_BY_PROJECTION	protein_coding	ACAT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	5601593	5617737	D	acetyl-CoA acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:93]
ENSCJAG00000010132	KNOWN_BY_PROJECTION	protein_coding	NPAT	chromosome:C_jacchus3.2.1:11:1:130397257:1	5630397	5698507	R	nuclear protein, ataxia-telangiectasia locus [Source:HGNC Symbol;Acc:HGNC:7896]
ENSCJAG00000021169	KNOWN_BY_PROJECTION	protein_coding	PSMC2	chromosome:C_jacchus3.2.1:8:1:128169293:1	71726025	71746046	D	proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:HGNC:9548]
ENSCJAG00000014136	NOVEL	pseudogene	ENSCJAG00000014136	chromosome:C_jacchus3.2.1:1:1:210400635:1	26482161	26482938	D	<no descrition>
ENSCJAG00000014083	KNOWN_BY_PROJECTION	protein_coding	TEX29	chromosome:C_jacchus3.2.1:1:1:210400635:1	26662427	26683758	D	testis expressed 29 [Source:HGNC Symbol;Acc:HGNC:20370]
ENSCJAG00000032566	KNOWN_BY_PROJECTION	protein_coding	SOX1	chromosome:C_jacchus3.2.1:1:1:210400635:1	27427200	27428372	D	SRY (sex determining region Y)-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]
ENSCJAG00000006645	KNOWN_BY_PROJECTION	protein_coding	SPACA7	chromosome:C_jacchus3.2.1:1:1:210400635:1	27685395	27705773	D	sperm acrosome associated 7 [Source:HGNC Symbol;Acc:HGNC:29575]
ENSCJAG00000023420	NOVEL	pseudogene	ENSCJAG00000023420	chromosome:C_jacchus3.2.1:1:1:210400635:1	27731876	27733587	D	<no descrition>
ENSCJAG00000012752	KNOWN_BY_PROJECTION	protein_coding	SLC26A5	chromosome:C_jacchus3.2.1:8:1:128169293:1	71751134	71795571	R	solute carrier family 26 (anion exchanger), member 5 [Source:HGNC Symbol;Acc:HGNC:9359]
ENSCJAG00000006651	KNOWN_BY_PROJECTION	protein_coding	TUBGCP3	chromosome:C_jacchus3.2.1:1:1:210400635:1	27786171	27881732	R	tubulin, gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
ENSCJAG00000006680	KNOWN_BY_PROJECTION	protein_coding	ATP11AUN	chromosome:C_jacchus3.2.1:1:1:210400635:1	27971921	27974367	D	ATP11A upstream neighbor [Source:HGNC Symbol;Acc:HGNC:33793]
ENSCJAG00000006683	KNOWN_BY_PROJECTION	protein_coding	ATP11A	chromosome:C_jacchus3.2.1:1:1:210400635:1	27981362	28173577	D	ATPase, class VI, type 11A [Source:HGNC Symbol;Acc:HGNC:13552]
ENSCJAG00000010159	KNOWN_BY_PROJECTION	protein_coding	ATM	chromosome:C_jacchus3.2.1:11:1:130397257:1	5699498	5891034	D	ATM serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:795]
ENSCJAG00000012643	KNOWN_BY_PROJECTION	protein_coding	RELN	chromosome:C_jacchus3.2.1:8:1:128169293:1	71841495	72416058	R	reelin [Source:HGNC Symbol;Acc:HGNC:9957]
ENSCJAG00000006690	KNOWN_BY_PROJECTION	protein_coding	MCF2L	chromosome:C_jacchus3.2.1:1:1:210400635:1	28302867	28364655	D	MCF.2 cell line derived transforming sequence-like [Source:HGNC Symbol;Acc:HGNC:14576]
ENSCJAG00000012748	NOVEL	pseudogene	ENSCJAG00000012748	chromosome:C_jacchus3.2.1:8:1:128169293:1	72358968	72360655	R	<no descrition>
ENSCJAG00000006721	KNOWN_BY_PROJECTION	protein_coding	F7	chromosome:C_jacchus3.2.1:1:1:210400635:1	28371963	28388307	D	coagulation factor VII (serum prothrombin conversion accelerator) [Source:HGNC Symbol;Acc:HGNC:3544]
ENSCJAG00000006736	KNOWN	protein_coding	F10	chromosome:C_jacchus3.2.1:1:1:210400635:1	28391726	28420243	D	Coagulation factor X (Predicted) {ECO:0000313|EMBL:ABY79107.1}; Coagulation factor X preproprotein {ECO:0000313|EMBL:JAB03590.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012487}  [Source:UniProtKB/TrEMBL;Acc:B0KW84]
ENSCJAG00000006758	KNOWN_BY_PROJECTION	protein_coding	PROZ	chromosome:C_jacchus3.2.1:1:1:210400635:1	28425945	28440240	D	protein Z, vitamin K-dependent plasma glycoprotein [Source:HGNC Symbol;Acc:HGNC:9460]
ENSCJAG00000012572	KNOWN	protein_coding	ORC5	chromosome:C_jacchus3.2.1:8:1:128169293:1	72541252	72637082	R	Origin recognition complex subunit 5 isoform 1 {ECO:0000313|EMBL:JAB04059.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023139}  [Source:UniProtKB/TrEMBL;Acc:F7I1U2]
ENSCJAG00000006773	KNOWN	protein_coding	PCID2	chromosome:C_jacchus3.2.1:1:1:210400635:1	28445103	28473860	R	PCI domain containing 2 (Predicted) {ECO:0000313|EMBL:ABY79108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012635}  [Source:UniProtKB/TrEMBL;Acc:B0KW85]
ENSCJAG00000010238	KNOWN_BY_PROJECTION	protein_coding	C11orf65	chromosome:C_jacchus3.2.1:11:1:130397257:1	5838641	5960390	R	chromosome 11 open reading frame 65 [Source:HGNC Symbol;Acc:HGNC:28519]
ENSCJAG00000010249	KNOWN	protein_coding	KDELC2	chromosome:C_jacchus3.2.1:11:1:130397257:1	5964546	5993942	R	KDEL motif-containing protein 2 {ECO:0000313|EMBL:JAB10478.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018889}  [Source:UniProtKB/TrEMBL;Acc:F7HB16]
ENSCJAG00000010267	KNOWN_BY_PROJECTION	protein_coding	EXPH5	chromosome:C_jacchus3.2.1:11:1:130397257:1	6001045	6095828	R	exophilin 5 [Source:HGNC Symbol;Acc:HGNC:30578]
ENSCJAG00000015976	KNOWN_BY_PROJECTION	protein_coding	KMT2E	chromosome:C_jacchus3.2.1:8:1:128169293:1	73426677	73537528	D	lysine (K)-specific methyltransferase 2E [Source:HGNC Symbol;Acc:HGNC:18541]
ENSCJAG00000010281	KNOWN_BY_PROJECTION	protein_coding	DDX10	chromosome:C_jacchus3.2.1:11:1:130397257:1	6167808	6447316	D	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Source:HGNC Symbol;Acc:HGNC:2735]
ENSCJAG00000010308	KNOWN	protein_coding	C11ORF87	chromosome:C_jacchus3.2.1:11:1:130397257:1	6931604	6935039	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018985}; Uncharacterized protein C11orf87 {ECO:0000313|EMBL:JAB21154.1}  [Source:UniProtKB/TrEMBL;Acc:F7GQ18]
ENSCJAG00000010313	NOVEL	protein_coding	ENSCJAG00000010313	chromosome:C_jacchus3.2.1:11:1:130397257:1	7451930	7452344	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018991}  [Source:UniProtKB/TrEMBL;Acc:F7GPZ2]
ENSCJAG00000010334	NOVEL	pseudogene	ENSCJAG00000010334	chromosome:C_jacchus3.2.1:11:1:130397257:1	7614496	7615353	R	<no descrition>
ENSCJAG00000010319	KNOWN_BY_PROJECTION	protein_coding	ZC3H12C	chromosome:C_jacchus3.2.1:11:1:130397257:1	7620879	7660723	D	zinc finger CCCH-type containing 12C [Source:HGNC Symbol;Acc:HGNC:29362]
ENSCJAG00000006900	KNOWN_BY_PROJECTION	protein_coding	LAMP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	28457719	28582815	D	lysosomal-associated membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:6499]
ENSCJAG00000010343	KNOWN_BY_PROJECTION	protein_coding	RDX	chromosome:C_jacchus3.2.1:11:1:130397257:1	7666285	7793974	R	radixin [Source:HGNC Symbol;Acc:HGNC:9944]
ENSCJAG00000016056	KNOWN	protein_coding	SRPK2	chromosome:C_jacchus3.2.1:8:1:128169293:1	73539700	73743085	R	SRSF protein kinase 2 isoform b {ECO:0000313|EMBL:JAB02319.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029590}  [Source:UniProtKB/TrEMBL;Acc:F7I592]
ENSCJAG00000016081	KNOWN_BY_PROJECTION	protein_coding	PUS7	chromosome:C_jacchus3.2.1:8:1:128169293:1	73896639	73971373	R	pseudouridylate synthase 7 (putative) [Source:HGNC Symbol;Acc:HGNC:26033]
ENSCJAG00000006831	KNOWN_BY_PROJECTION	protein_coding	CUL4A	chromosome:C_jacchus3.2.1:1:1:210400635:1	28473402	28531449	D	cullin 4A [Source:HGNC Symbol;Acc:HGNC:2554]
ENSCJAG00000016090	KNOWN	protein_coding	RINT1	chromosome:C_jacchus3.2.1:8:1:128169293:1	73976194	74009234	D	RAD50-interacting protein 1 {ECO:0000313|EMBL:JAB05622.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029650}  [Source:UniProtKB/TrEMBL;Acc:F7HKZ3]
ENSCJAG00000022358	NOVEL	pseudogene	ENSCJAG00000022358	chromosome:C_jacchus3.2.1:11:1:130397257:1	7813574	7814173	R	<no descrition>
ENSCJAG00000010395	KNOWN	protein_coding	FDX1	chromosome:C_jacchus3.2.1:11:1:130397257:1	7928443	7964200	D	Adrenodoxin, mitochondrial {ECO:0000313|EMBL:JAB05525.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019156}  [Source:UniProtKB/TrEMBL;Acc:F6R108]
ENSCJAG00000016112	KNOWN_BY_PROJECTION	protein_coding	EFCAB10	chromosome:C_jacchus3.2.1:8:1:128169293:1	74007033	74028826	R	EF-hand calcium binding domain 10 [Source:HGNC Symbol;Acc:HGNC:34531]
ENSCJAG00000010400	NOVEL	pseudogene	ENSCJAG00000010400	chromosome:C_jacchus3.2.1:11:1:130397257:1	8013733	8014058	R	<no descrition>
ENSCJAG00000016114	KNOWN	protein_coding	ATXN7L1	chromosome:C_jacchus3.2.1:8:1:128169293:1	74050082	74340104	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029721}  [Source:UniProtKB/TrEMBL;Acc:F7I9V6]
ENSCJAG00000010405	KNOWN	protein_coding	ARHGAP20	chromosome:C_jacchus3.2.1:11:1:130397257:1	8068540	8198177	R	Rho GTPase-activating protein 20 isoform 2 {ECO:0000313|EMBL:JAB30981.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050976}  [Source:UniProtKB/TrEMBL;Acc:F6T067]
ENSCJAG00000010442	KNOWN_BY_PROJECTION	protein_coding	C11orf53	chromosome:C_jacchus3.2.1:11:1:130397257:1	8752863	8780491	D	chromosome 11 open reading frame 53 [Source:HGNC Symbol;Acc:HGNC:30527]
ENSCJAG00000016156	KNOWN_BY_PROJECTION	protein_coding	CDHR3	chromosome:C_jacchus3.2.1:8:1:128169293:1	74447497	74514952	D	cadherin-related family member 3 [Source:HGNC Symbol;Acc:HGNC:26308]
ENSCJAG00000010453	NOVEL	protein_coding	ENSCJAG00000010453	chromosome:C_jacchus3.2.1:11:1:130397257:1	8789424	8789785	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019266}  [Source:UniProtKB/TrEMBL;Acc:F6T515]
ENSCJAG00000010455	KNOWN_BY_PROJECTION	protein_coding	COLCA2	chromosome:C_jacchus3.2.1:11:1:130397257:1	8792842	8801916	D	colorectal cancer associated 2 [Source:HGNC Symbol;Acc:HGNC:26978]
ENSCJAG00000010464	KNOWN_BY_PROJECTION	protein_coding	POU2AF1	chromosome:C_jacchus3.2.1:11:1:130397257:1	8844367	8849111	R	POU class 2 associating factor 1 [Source:HGNC Symbol;Acc:HGNC:9211]
ENSCJAG00000010471	KNOWN_BY_PROJECTION	protein_coding	BTG4	chromosome:C_jacchus3.2.1:11:1:130397257:1	8963196	9008921	R	B-cell translocation gene 4 [Source:HGNC Symbol;Acc:HGNC:13862]
ENSCJAG00000006915	KNOWN_BY_PROJECTION	protein_coding	GRTP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	28587349	28621826	R	growth hormone regulated TBC protein 1 [Source:HGNC Symbol;Acc:HGNC:20310]
ENSCJAG00000016176	NOVEL	protein_coding	ENSCJAG00000016176	chromosome:C_jacchus3.2.1:8:1:128169293:1	74575434	74599640	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029802}  [Source:UniProtKB/TrEMBL;Acc:F7HRD6]
ENSCJAG00000010486	KNOWN_BY_PROJECTION	protein_coding	C11orf88	chromosome:C_jacchus3.2.1:11:1:130397257:1	9011337	9037510	D	chromosome 11 open reading frame 88 [Source:HGNC Symbol;Acc:HGNC:25061]
ENSCJAG00000006917	KNOWN	protein_coding	ADPRHL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	28685645	28717368	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012815}; [Protein ADP-ribosylarginine] hydrolase-like protein 1 isoform 1 {ECO:0000313|EMBL:JAB14727.1}  [Source:UniProtKB/TrEMBL;Acc:F6PXM0]
ENSCJAG00000016193	KNOWN_BY_PROJECTION	protein_coding	NAMPT	chromosome:C_jacchus3.2.1:8:1:128169293:1	74746725	74786815	R	nicotinamide phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:30092]
ENSCJAG00000010496	KNOWN_BY_PROJECTION	protein_coding	LAYN	chromosome:C_jacchus3.2.1:11:1:130397257:1	9041679	9063984	D	layilin [Source:HGNC Symbol;Acc:HGNC:29471]
ENSCJAG00000016223	KNOWN_BY_PROJECTION	protein_coding	PIK3CG	chromosome:C_jacchus3.2.1:8:1:128169293:1	75442533	75482849	D	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma [Source:HGNC Symbol;Acc:HGNC:8978]
ENSCJAG00000006927	KNOWN_BY_PROJECTION	protein_coding	DCUN1D2	chromosome:C_jacchus3.2.1:1:1:210400635:1	28722943	28751069	R	DCN1, defective in cullin neddylation 1, domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20328]
ENSCJAG00000006931	KNOWN_BY_PROJECTION	protein_coding	TMCO3	chromosome:C_jacchus3.2.1:1:1:210400635:1	28763738	28827175	D	transmembrane and coiled-coil domains 3 [Source:HGNC Symbol;Acc:HGNC:20329]
ENSCJAG00000010527	NOVEL	pseudogene	ENSCJAG00000010527	chromosome:C_jacchus3.2.1:11:1:130397257:1	9054563	9055539	D	<no descrition>
ENSCJAG00000016244	KNOWN	protein_coding	PRKAR2B	chromosome:C_jacchus3.2.1:8:1:128169293:1	75620715	75728478	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049624}; cAMP-dependent protein kinase type II-beta regulatory subunit {ECO:0000313|EMBL:JAB09224.1}  [Source:UniProtKB/TrEMBL;Acc:F7ADV3]
ENSCJAG00000010533	KNOWN_BY_PROJECTION	protein_coding	SIK2	chromosome:C_jacchus3.2.1:11:1:130397257:1	9105459	9223377	D	salt-inducible kinase 2 [Source:HGNC Symbol;Acc:HGNC:21680]
ENSCJAG00000006950	KNOWN_BY_PROJECTION	protein_coding	TFDP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	28903476	28931319	D	transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
ENSCJAG00000010555	NOVEL	pseudogene	ENSCJAG00000010555	chromosome:C_jacchus3.2.1:11:1:130397257:1	9206852	9208039	D	<no descrition>
ENSCJAG00000006956	KNOWN_BY_PROJECTION	protein_coding	ATP4B	chromosome:C_jacchus3.2.1:1:1:210400635:1	28941291	28950667	R	ATPase, H+/K+ exchanging, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:820]
ENSCJAG00000016260	KNOWN_BY_PROJECTION	protein_coding	HBP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	75735057	75774426	D	HMG-box transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:23200]
ENSCJAG00000016283	KNOWN_BY_PROJECTION	protein_coding	COG5	chromosome:C_jacchus3.2.1:8:1:128169293:1	75774831	76151354	R	component of oligomeric golgi complex 5 [Source:HGNC Symbol;Acc:HGNC:14857]
ENSCJAG00000010559	KNOWN_BY_PROJECTION	protein_coding	PPP2R1B	chromosome:C_jacchus3.2.1:11:1:130397257:1	9226079	9271280	R	protein phosphatase 2, regulatory subunit A, beta [Source:HGNC Symbol;Acc:HGNC:9303]
ENSCJAG00000016319	NOVEL	pseudogene	ENSCJAG00000016319	chromosome:C_jacchus3.2.1:8:1:128169293:1	75820762	75822425	D	<no descrition>
ENSCJAG00000016322	KNOWN	protein_coding	GPR22	chromosome:C_jacchus3.2.1:8:1:128169293:1	76031283	76036867	D	Putative G-protein coupled receptor 22 {ECO:0000313|EMBL:JAB17015.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046310}  [Source:UniProtKB/TrEMBL;Acc:F6YRV5]
ENSCJAG00000016323	KNOWN	protein_coding	DUS4L	chromosome:C_jacchus3.2.1:8:1:128169293:1	76151142	76165490	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030053}; tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like {ECO:0000313|EMBL:JAB06144.1}  [Source:UniProtKB/TrEMBL;Acc:F6RTL3]
ENSCJAG00000006957	KNOWN_BY_PROJECTION	protein_coding	GRK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	28959908	28981235	D	G protein-coupled receptor kinase 1 [Source:HGNC Symbol;Acc:HGNC:10013]
ENSCJAG00000016329	KNOWN_BY_PROJECTION	protein_coding	BCAP29	chromosome:C_jacchus3.2.1:8:1:128169293:1	76167082	76220309	D	B-cell receptor-associated protein 29 [Source:HGNC Symbol;Acc:HGNC:24131]
ENSCJAG00000018945	KNOWN_BY_PROJECTION	protein_coding	TMEM255B	chromosome:C_jacchus3.2.1:1:1:210400635:1	29010554	29038129	D	transmembrane protein 255B [Source:HGNC Symbol;Acc:HGNC:28297]
ENSCJAG00000018947	KNOWN_BY_PROJECTION	protein_coding	GAS6	chromosome:C_jacchus3.2.1:1:1:210400635:1	29049391	29091592	R	growth arrest-specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]
ENSCJAG00000016357	KNOWN_BY_PROJECTION	protein_coding	SLC26A4	chromosome:C_jacchus3.2.1:8:1:128169293:1	76296491	76357893	D	solute carrier family 26 (anion exchanger), member 4 [Source:HGNC Symbol;Acc:HGNC:8818]
ENSCJAG00000016379	KNOWN	protein_coding	CBLL1	chromosome:C_jacchus3.2.1:8:1:128169293:1	76378709	76396913	D	E3 ubiquitin-protein ligase Hakai {ECO:0000313|EMBL:JAB10562.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030160}  [Source:UniProtKB/TrEMBL;Acc:F6V903]
ENSCJAG00000010680	KNOWN	protein_coding	ALG9	chromosome:C_jacchus3.2.1:11:1:130397257:1	9294467	9398549	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019857}  [Source:UniProtKB/TrEMBL;Acc:F7C7N7]
ENSCJAG00000016400	KNOWN_BY_PROJECTION	protein_coding	SLC26A3	chromosome:C_jacchus3.2.1:8:1:128169293:1	76400988	76450590	R	solute carrier family 26 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:3018]
ENSCJAG00000033547	NOVEL	protein_coding	ENSCJAG00000033547	chromosome:C_jacchus3.2.1:1:1:210400635:1	29187542	29202242	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048514}  [Source:UniProtKB/TrEMBL;Acc:F7GCX2]
ENSCJAG00000018972	KNOWN	protein_coding	RASA3	chromosome:C_jacchus3.2.1:1:1:210400635:1	29206786	29326797	R	Ras GTPase-activating protein 3 {ECO:0000313|EMBL:JAB06773.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035307}  [Source:UniProtKB/TrEMBL;Acc:F7I8S6]
ENSCJAG00000016418	KNOWN	protein_coding	DLD	chromosome:C_jacchus3.2.1:8:1:128169293:1	76542404	76572489	D	Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}  [Source:UniProtKB/TrEMBL;Acc:F7GNE6]
ENSCJAG00000019007	NOVEL	protein_coding	ENSCJAG00000019007	chromosome:C_jacchus3.2.1:1:1:210400635:1	29361576	29362993	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035317}  [Source:UniProtKB/TrEMBL;Acc:F7I6H0]
ENSCJAG00000019010	KNOWN	protein_coding	CDC16	chromosome:C_jacchus3.2.1:1:1:210400635:1	29422761	29470503	D	Cell division cycle protein 16 homolog {ECO:0000313|EMBL:JAB03600.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035445}  [Source:UniProtKB/TrEMBL;Acc:F7IKG7]
ENSCJAG00000010777	NOVEL	protein_coding	ENSCJAG00000010777	chromosome:C_jacchus3.2.1:11:1:130397257:1	9378056	9378584	D	Guanine nucleotide-binding protein subunit gamma {ECO:0000256|RuleBase:RU004973}  [Source:UniProtKB/TrEMBL;Acc:F7BTH7]
ENSCJAG00000010781	KNOWN_BY_PROJECTION	protein_coding	C11orf1	chromosome:C_jacchus3.2.1:11:1:130397257:1	9398353	9403155	D	chromosome 11 open reading frame 1 [Source:HGNC Symbol;Acc:HGNC:1163]
ENSCJAG00000016477	KNOWN	protein_coding	LAMB1	chromosome:C_jacchus3.2.1:8:1:128169293:1	76575471	76662454	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030460}  [Source:UniProtKB/TrEMBL;Acc:F7A7U7]
ENSCJAG00000010788	KNOWN_BY_PROJECTION	protein_coding	CRYAB	chromosome:C_jacchus3.2.1:11:1:130397257:1	9419385	9422535	R	crystallin, alpha B [Source:HGNC Symbol;Acc:HGNC:2389]
ENSCJAG00000010804	NOVEL	protein_coding	ENSCJAG00000010804	chromosome:C_jacchus3.2.1:11:1:130397257:1	9419572	9423917	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019904}  [Source:UniProtKB/TrEMBL;Acc:F6ZRI2]
ENSCJAG00000010805	KNOWN	protein_coding	HSPB2	chromosome:C_jacchus3.2.1:11:1:130397257:1	9422983	9429668	D	Heat shock protein beta-2 {ECO:0000313|EMBL:JAB01892.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019913}  [Source:UniProtKB/TrEMBL;Acc:F6ZR37]
ENSCJAG00000010811	KNOWN_BY_PROJECTION	protein_coding	C11orf52	chromosome:C_jacchus3.2.1:11:1:130397257:1	9429697	9437540	D	chromosome 11 open reading frame 52 [Source:HGNC Symbol;Acc:HGNC:30531]
ENSCJAG00000010812	KNOWN	protein_coding	DIXDC1	chromosome:C_jacchus3.2.1:11:1:130397257:1	9449292	9533528	D	Dixin isoform b {ECO:0000313|EMBL:JAB08385.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020044}  [Source:UniProtKB/TrEMBL;Acc:F7D3V1]
ENSCJAG00000010906	KNOWN_BY_PROJECTION	protein_coding	DLAT	chromosome:C_jacchus3.2.1:11:1:130397257:1	9537827	9571931	D	dihydrolipoamide S-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2896]
ENSCJAG00000016563	KNOWN_BY_PROJECTION	protein_coding	LAMB4	chromosome:C_jacchus3.2.1:8:1:128169293:1	76685783	76808692	R	laminin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6491]
ENSCJAG00000019102	KNOWN	protein_coding	UPF3A	chromosome:C_jacchus3.2.1:1:1:210400635:1	29480671	29502318	D	Regulator of nonsense transcripts 3A isoform hUpf3p {ECO:0000313|EMBL:JAB19714.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049147}  [Source:UniProtKB/TrEMBL;Acc:F7AIY8]
ENSCJAG00000019117	KNOWN	protein_coding	CHAMP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	29518216	29524422	D	Chromosome alignment-maintaining phosphoprotein 1 {ECO:0000313|EMBL:JAB02340.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035484}  [Source:UniProtKB/TrEMBL;Acc:F7IFR9]
ENSCJAG00000033224	NOVEL	protein_coding	ENSCJAG00000033224	chromosome:C_jacchus3.2.1:1:1:210400635:1	34004830	34006505	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013302}  [Source:UniProtKB/TrEMBL;Acc:F7CEU0]
ENSCJAG00000021285	KNOWN	protein_coding	SPRY2	chromosome:C_jacchus3.2.1:1:1:210400635:1	34184990	34190032	D	Protein sprouty homolog 2 {ECO:0000313|EMBL:JAB10621.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039614}  [Source:UniProtKB/TrEMBL;Acc:F7GUB7]
ENSCJAG00000021282	KNOWN_BY_PROJECTION	protein_coding	NDFIP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	34986745	35072317	R	Nedd4 family interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:18537]
ENSCJAG00000010954	KNOWN_BY_PROJECTION	protein_coding	PIH1D2	chromosome:C_jacchus3.2.1:11:1:130397257:1	9571683	9584069	R	PIH1 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25210]
ENSCJAG00000010961	KNOWN	protein_coding	C11ORF57	chromosome:C_jacchus3.2.1:11:1:130397257:1	9585444	9594414	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020238}; Uncharacterized protein C11orf57 isoform a {ECO:0000313|EMBL:JAB08277.1}  [Source:UniProtKB/TrEMBL;Acc:F7ET36]
ENSCJAG00000010970	KNOWN	protein_coding	TIMM8B	chromosome:C_jacchus3.2.1:11:1:130397257:1	9596519	9598092	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045235}  [Source:UniProtKB/TrEMBL;Acc:F6QSU7]
ENSCJAG00000010975	KNOWN_BY_PROJECTION	protein_coding	SDHD	chromosome:C_jacchus3.2.1:11:1:130397257:1	9598251	9606393	D	succinate dehydrogenase complex, subunit D, integral membrane protein [Source:HGNC Symbol;Acc:HGNC:10683]
ENSCJAG00000012499	KNOWN	protein_coding	IL18	chromosome:C_jacchus3.2.1:11:1:130397257:1	9646359	9674998	R	Interleukin-18 isoform 1 proprotein {ECO:0000313|EMBL:JAB05421.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022914}  [Source:UniProtKB/TrEMBL;Acc:F7IHM7]
ENSCJAG00000012498	KNOWN_BY_PROJECTION	protein_coding	TEX12	chromosome:C_jacchus3.2.1:11:1:130397257:1	9682054	9683640	D	testis expressed 12 [Source:HGNC Symbol;Acc:HGNC:11734]
ENSCJAG00000012446	KNOWN_BY_PROJECTION	protein_coding	BCO2	chromosome:C_jacchus3.2.1:11:1:130397257:1	9687225	9721442	D	beta-carotene oxygenase 2 [Source:HGNC Symbol;Acc:HGNC:18503]
ENSCJAG00000016572	KNOWN_BY_PROJECTION	protein_coding	NRCAM	chromosome:C_jacchus3.2.1:8:1:128169293:1	76832310	77161932	R	neuronal cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:7994]
ENSCJAG00000034106	NOVEL	pseudogene	ENSCJAG00000034106	chromosome:C_jacchus3.2.1:1:1:210400635:1	35129468	35130211	D	<no descrition>
ENSCJAG00000021261	KNOWN	protein_coding	RBM26	chromosome:C_jacchus3.2.1:1:1:210400635:1	35151874	35241744	D	RNA-binding protein 26 {ECO:0000313|EMBL:JAB04775.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039604}  [Source:UniProtKB/TrEMBL;Acc:F7GZB9]
ENSCJAG00000016680	KNOWN	protein_coding	PNPLA8	chromosome:C_jacchus3.2.1:8:1:128169293:1	77177296	77242407	R	Calcium-independent phospholipase A2-gamma isoform 1 {ECO:0000313|EMBL:JAB10410.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030737}  [Source:UniProtKB/TrEMBL;Acc:F6XEQ7]
ENSCJAG00000012437	KNOWN	protein_coding	PTS	chromosome:C_jacchus3.2.1:11:1:130397257:1	9727419	9735439	D	6-pyruvoyl tetrahydrobiopterin synthase {ECO:0000256|PIRNR:PIRNR006113}  [Source:UniProtKB/TrEMBL;Acc:F7I609]
ENSCJAG00000012429	NOVEL	protein_coding	ENSCJAG00000012429	chromosome:C_jacchus3.2.1:11:1:130397257:1	10584574	10620085	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022752}  [Source:UniProtKB/TrEMBL;Acc:F7IAR5]
ENSCJAG00000016711	KNOWN	protein_coding	THAP5	chromosome:C_jacchus3.2.1:8:1:128169293:1	77277361	77282790	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030750}  [Source:UniProtKB/TrEMBL;Acc:F6W931]
ENSCJAG00000016717	KNOWN	protein_coding	DNAJB9	chromosome:C_jacchus3.2.1:8:1:128169293:1	77283076	77287994	D	DnaJ homolog subfamily B member 9 {ECO:0000313|EMBL:JAB04530.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030761}  [Source:UniProtKB/TrEMBL;Acc:F6W7U6]
ENSCJAG00000016728	KNOWN	protein_coding	IMMP2L	chromosome:C_jacchus3.2.1:8:1:128169293:1	79425375	79715061	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030781}  [Source:UniProtKB/TrEMBL;Acc:F6V3M8]
ENSCJAG00000016735	KNOWN	protein_coding	LRRN3	chromosome:C_jacchus3.2.1:8:1:128169293:1	79856632	79889177	D	Leucine-rich repeat neuronal protein 3 {ECO:0000313|EMBL:JAB20406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030791}  [Source:UniProtKB/TrEMBL;Acc:F6UHJ0]
ENSCJAG00000032324	NOVEL	protein_coding	ENSCJAG00000032324	chromosome:C_jacchus3.2.1:8:1:128169293:1	80192360	80193633	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015170}  [Source:UniProtKB/TrEMBL;Acc:F7HFM1]
ENSCJAG00000012342	KNOWN_BY_PROJECTION	protein_coding	NCAM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	10710214	10782569	D	neural cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:7656]
ENSCJAG00000012427	NOVEL	protein_coding	ENSCJAG00000012427	chromosome:C_jacchus3.2.1:11:1:130397257:1	10775987	10779797	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022745}  [Source:UniProtKB/TrEMBL;Acc:F7ID01]
ENSCJAG00000012306	KNOWN_BY_PROJECTION	protein_coding	TTC12	chromosome:C_jacchus3.2.1:11:1:130397257:1	10812645	10872609	D	tetratricopeptide repeat domain 12 [Source:HGNC Symbol;Acc:HGNC:23700]
ENSCJAG00000021260	KNOWN	protein_coding	RNF219	chromosome:C_jacchus3.2.1:1:1:210400635:1	35973953	36012708	D	RING finger protein 219 {ECO:0000313|EMBL:JAB08097.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039576}  [Source:UniProtKB/TrEMBL;Acc:F7HF25]
ENSCJAG00000012279	KNOWN_BY_PROJECTION	protein_coding	ANKK1	chromosome:C_jacchus3.2.1:11:1:130397257:1	10889021	10904331	D	ankyrin repeat and kinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21027]
ENSCJAG00000021259	NOVEL	pseudogene	ENSCJAG00000021259	chromosome:C_jacchus3.2.1:1:1:210400635:1	36194106	36194493	D	<no descrition>
ENSCJAG00000021257	KNOWN_BY_PROJECTION	protein_coding	EDNRB	chromosome:C_jacchus3.2.1:1:1:210400635:1	36778082	36801494	D	endothelin receptor type B [Source:HGNC Symbol;Acc:HGNC:3180]
ENSCJAG00000012246	KNOWN	protein_coding	DRD2	chromosome:C_jacchus3.2.1:11:1:130397257:1	10914111	10929399	R	D(2) dopamine receptor isoform long {ECO:0000313|EMBL:JAB18125.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022482}  [Source:UniProtKB/TrEMBL;Acc:F7IMQ1]
ENSCJAG00000016740	KNOWN	protein_coding	DOCK4	chromosome:C_jacchus3.2.1:8:1:128169293:1	80485522	80776119	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031068}  [Source:UniProtKB/TrEMBL;Acc:F7HWF5]
ENSCJAG00000021252	KNOWN_BY_PROJECTION	protein_coding	SLAIN1	chromosome:C_jacchus3.2.1:1:1:210400635:1	36909536	36974156	R	SLAIN motif family, member 1 [Source:HGNC Symbol;Acc:HGNC:26387]
ENSCJAG00000012228	KNOWN_BY_PROJECTION	protein_coding	TMPRSS5	chromosome:C_jacchus3.2.1:11:1:130397257:1	11208719	11231794	R	transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
ENSCJAG00000016891	KNOWN_BY_PROJECTION	protein_coding	ZNF277	chromosome:C_jacchus3.2.1:8:1:128169293:1	80998276	81127809	D	zinc finger protein 277 [Source:HGNC Symbol;Acc:HGNC:13070]
ENSCJAG00000016922	NOVEL	pseudogene	ENSCJAG00000016922	chromosome:C_jacchus3.2.1:8:1:128169293:1	81170511	81170752	R	<no descrition>
ENSCJAG00000012168	KNOWN_BY_PROJECTION	protein_coding	ZW10	chromosome:C_jacchus3.2.1:11:1:130397257:1	11248502	11285392	R	zw10 kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13194]
ENSCJAG00000016925	KNOWN	protein_coding	IFRD1	chromosome:C_jacchus3.2.1:8:1:128169293:1	81215137	81270293	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031190}  [Source:UniProtKB/TrEMBL;Acc:F7IJW6]
ENSCJAG00000016970	KNOWN	protein_coding	LSMEM1	chromosome:C_jacchus3.2.1:8:1:128169293:1	81273744	81283482	D	Coiled-coil domain-containing transmembrane protein C7orf53 {ECO:0000313|EMBL:JAB39313.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031206}  [Source:UniProtKB/TrEMBL;Acc:F7IF56]
ENSCJAG00000016973	NOVEL	protein_coding	ENSCJAG00000016973	chromosome:C_jacchus3.2.1:8:1:128169293:1	81330374	81331220	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031223}  [Source:UniProtKB/TrEMBL;Acc:F7IF41]
ENSCJAG00000016982	KNOWN	protein_coding	TMEM168	chromosome:C_jacchus3.2.1:8:1:128169293:1	81574837	81606951	R	Transmembrane protein 168 {ECO:0000313|EMBL:JAB05983.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031255}  [Source:UniProtKB/TrEMBL;Acc:F7ICP0]
ENSCJAG00000017001	KNOWN	protein_coding	C7ORF60	chromosome:C_jacchus3.2.1:8:1:128169293:1	81633120	81735230	R	Probable methyltransferase BTM2 homolog {ECO:0000256|HAMAP-Rule:MF_03044}  [Source:UniProtKB/TrEMBL;Acc:F7IAE2]
ENSCJAG00000021235	KNOWN_BY_PROJECTION	protein_coding	SCEL	chromosome:C_jacchus3.2.1:1:1:210400635:1	36995026	37108670	R	sciellin [Source:HGNC Symbol;Acc:HGNC:10573]
ENSCJAG00000017021	KNOWN	protein_coding	GPR85	chromosome:C_jacchus3.2.1:8:1:128169293:1	81927384	81934709	R	Putative G-protein coupled receptor 85 {ECO:0000313|EMBL:JAB13024.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042222}  [Source:UniProtKB/TrEMBL;Acc:F7B9Z8]
ENSCJAG00000017028	NOVEL	pseudogene	ENSCJAG00000017028	chromosome:C_jacchus3.2.1:8:1:128169293:1	82314801	82315117	D	<no descrition>
ENSCJAG00000017032	KNOWN	protein_coding	PPP1R3A	chromosome:C_jacchus3.2.1:8:1:128169293:1	82702785	82744299	R	Protein phosphatase 1 regulatory subunit 3A {ECO:0000313|EMBL:JAB35676.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031318}  [Source:UniProtKB/TrEMBL;Acc:F7HYP3]
ENSCJAG00000012053	KNOWN	protein_coding	USP28	chromosome:C_jacchus3.2.1:11:1:130397257:1	11304358	11392622	R	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}  [Source:UniProtKB/TrEMBL;Acc:F7AA66]
ENSCJAG00000012037	KNOWN_BY_PROJECTION	protein_coding	HTR3B	chromosome:C_jacchus3.2.1:11:1:130397257:1	11432445	11474144	D	5-hydroxytryptamine (serotonin) receptor 3B, ionotropic [Source:HGNC Symbol;Acc:HGNC:5298]
ENSCJAG00000017044	NOVEL	protein_coding	FOXP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	83110333	83500690	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049651}  [Source:UniProtKB/TrEMBL;Acc:F6ZDT8]
ENSCJAG00000012009	KNOWN_BY_PROJECTION	protein_coding	HTR3A	chromosome:C_jacchus3.2.1:11:1:130397257:1	11500535	11515664	D	5-hydroxytryptamine (serotonin) receptor 3A, ionotropic [Source:HGNC Symbol;Acc:HGNC:5297]
ENSCJAG00000017110	KNOWN_BY_PROJECTION	protein_coding	MDFIC	chromosome:C_jacchus3.2.1:8:1:128169293:1	83741957	83828746	D	MyoD family inhibitor domain containing [Source:HGNC Symbol;Acc:HGNC:28870]
ENSCJAG00000005199	KNOWN_BY_PROJECTION	protein_coding	TFEC	chromosome:C_jacchus3.2.1:8:1:128169293:1	84804738	85013957	R	transcription factor EC [Source:HGNC Symbol;Acc:HGNC:11754]
ENSCJAG00000021196	KNOWN_BY_PROJECTION	protein_coding	MYCBP2	chromosome:C_jacchus3.2.1:1:1:210400635:1	37325055	37607936	D	MYC binding protein 2, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:23386]
ENSCJAG00000005193	KNOWN	protein_coding	TES	chromosome:C_jacchus3.2.1:8:1:128169293:1	85068882	85117862	D	Testin  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLG8]
ENSCJAG00000005190	KNOWN_BY_PROJECTION	protein_coding	CAV2	chromosome:C_jacchus3.2.1:8:1:128169293:1	85374038	85380681	D	caveolin 2 [Source:HGNC Symbol;Acc:HGNC:1528]
ENSCJAG00000005181	KNOWN	protein_coding	CAV1	chromosome:C_jacchus3.2.1:8:1:128169293:1	85401254	85437833	D	Caveolin-1  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLG6]
ENSCJAG00000011978	KNOWN	protein_coding	ZBTB16	chromosome:C_jacchus3.2.1:11:1:130397257:1	11593361	11797842	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022041}; Zinc finger and BTB domain-containing protein 16 {ECO:0000313|EMBL:JAB05432.1}  [Source:UniProtKB/TrEMBL;Acc:F7BCK8]
ENSCJAG00000011964	KNOWN_BY_PROJECTION	protein_coding	NNMT	chromosome:C_jacchus3.2.1:11:1:130397257:1	11804857	11864524	D	nicotinamide N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:7861]
ENSCJAG00000011958	KNOWN_BY_PROJECTION	protein_coding	C11orf71	chromosome:C_jacchus3.2.1:11:1:130397257:1	11932645	11941240	R	chromosome 11 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:25937]
ENSCJAG00000011949	KNOWN	protein_coding	RBM7	chromosome:C_jacchus3.2.1:11:1:130397257:1	11941523	11950229	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021947}  [Source:UniProtKB/TrEMBL;Acc:F6TZA5]
ENSCJAG00000005145	KNOWN	protein_coding	MET	chromosome:C_jacchus3.2.1:8:1:128169293:1	85558026	85683868	D	Hepatocyte growth factor receptor  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLG5]
ENSCJAG00000012434	KNOWN	protein_coding	REXO2	chromosome:C_jacchus3.2.1:11:1:130397257:1	11971291	11982379	D	Oligoribonuclease, mitochondrial {ECO:0000313|EMBL:JAB12666.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022821}  [Source:UniProtKB/TrEMBL;Acc:F7HWJ0]
ENSCJAG00000035406	NOVEL	pseudogene	ENSCJAG00000035406	chromosome:C_jacchus3.2.1:1:1:210400635:1	37578929	37579964	R	<no descrition>
ENSCJAG00000021193	KNOWN	protein_coding	FBXL3	chromosome:C_jacchus3.2.1:1:1:210400635:1	37624475	37646640	D	F-box/LRR-repeat protein 3 {ECO:0000313|EMBL:JAB08436.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039464}  [Source:UniProtKB/TrEMBL;Acc:F7FSR9]
ENSCJAG00000021191	KNOWN_BY_PROJECTION	protein_coding	CLN5	chromosome:C_jacchus3.2.1:1:1:210400635:1	37649990	37661394	R	ceroid-lipofuscinosis, neuronal 5 [Source:HGNC Symbol;Acc:HGNC:2076]
ENSCJAG00000012468	KNOWN_BY_PROJECTION	protein_coding	NXPE1	chromosome:C_jacchus3.2.1:11:1:130397257:1	12068963	12151529	R	neurexophilin and PC-esterase domain family, member 1 [Source:HGNC Symbol;Acc:HGNC:28527]
ENSCJAG00000021189	KNOWN_BY_PROJECTION	protein_coding	IRG1	chromosome:C_jacchus3.2.1:1:1:210400635:1	37682719	37703980	R	immunoresponsive 1 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:33904]
ENSCJAG00000012491	KNOWN_BY_PROJECTION	protein_coding	NXPE2	chromosome:C_jacchus3.2.1:11:1:130397257:1	12191767	12215828	D	neurexophilin and PC-esterase domain family, member 2 [Source:HGNC Symbol;Acc:HGNC:26331]
ENSCJAG00000021188	NOVEL	protein_coding	ENSCJAG00000021188	chromosome:C_jacchus3.2.1:1:1:210400635:1	37712762	37713859	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039454}  [Source:UniProtKB/TrEMBL;Acc:F7FT17]
ENSCJAG00000033704	NOVEL	protein_coding	ENSCJAG00000033704	chromosome:C_jacchus3.2.1:8:1:128169293:1	85740964	85742072	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049413}  [Source:UniProtKB/TrEMBL;Acc:F6UU68]
ENSCJAG00000012501	KNOWN	protein_coding	CADM1	chromosome:C_jacchus3.2.1:11:1:130397257:1	12741296	12808305	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022964}  [Source:UniProtKB/TrEMBL;Acc:F7I896]
ENSCJAG00000005079	KNOWN	protein_coding	CAPZA2	chromosome:C_jacchus3.2.1:8:1:128169293:1	85749449	85804753	D	F-actin-capping protein subunit alpha-2  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLG4]
ENSCJAG00000021187	NOVEL	protein_coding	ENSCJAG00000021187	chromosome:C_jacchus3.2.1:1:1:210400635:1	37755733	37761246	D	<no descrition>
ENSCJAG00000032715	NOVEL	protein_coding	ENSCJAG00000032715	chromosome:C_jacchus3.2.1:1:1:210400635:1	38797088	38800302	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050575}  [Source:UniProtKB/TrEMBL;Acc:F7E5L1]
ENSCJAG00000004988	KNOWN	protein_coding	ST7	chromosome:C_jacchus3.2.1:8:1:128169293:1	85829785	86139657	D	Suppressor of tumorigenicity 7 protein  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLG2]
ENSCJAG00000005070	NOVEL	protein_coding	ENSCJAG00000005070	chromosome:C_jacchus3.2.1:8:1:128169293:1	85832894	85833473	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052341}  [Source:UniProtKB/TrEMBL;Acc:F7HK77]
ENSCJAG00000004986	NOVEL	pseudogene	ENSCJAG00000004986	chromosome:C_jacchus3.2.1:8:1:128169293:1	86156129	86156579	R	<no descrition>
ENSCJAG00000021177	KNOWN_BY_PROJECTION	protein_coding	LMO7	chromosome:C_jacchus3.2.1:1:1:210400635:1	38822839	39072860	R	LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646]
ENSCJAG00000004983	KNOWN	protein_coding	WNT2	chromosome:C_jacchus3.2.1:8:1:128169293:1	86193453	86240853	R	Protein Wnt-2  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLG1]
ENSCJAG00000004944	KNOWN	protein_coding	ASZ1	chromosome:C_jacchus3.2.1:8:1:128169293:1	86270852	86335683	R	Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLG0]
ENSCJAG00000004895	KNOWN_BY_PROJECTION	protein_coding	CFTR	chromosome:C_jacchus3.2.1:8:1:128169293:1	86390342	86571542	D	cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) [Source:HGNC Symbol;Acc:HGNC:1884]
ENSCJAG00000012570	KNOWN_BY_PROJECTION	protein_coding	BUD13	chromosome:C_jacchus3.2.1:11:1:130397257:1	14313214	14337263	R	BUD13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28199]
ENSCJAG00000004816	KNOWN	protein_coding	CTTNBP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	86616609	86786986	R	Cortactin-binding protein 2  [Source:UniProtKB/Swiss-Prot;Acc:Q2QLF8]
ENSCJAG00000012583	KNOWN	protein_coding	ZNF259	chromosome:C_jacchus3.2.1:11:1:130397257:1	14343722	14352981	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023076}; Zinc finger protein 259 (Predicted) {ECO:0000313|EMBL:ABZ10532.1}  [Source:UniProtKB/TrEMBL;Acc:B0KWQ8]
ENSCJAG00000004812	KNOWN_BY_PROJECTION	protein_coding	LSM8	chromosome:C_jacchus3.2.1:8:1:128169293:1	87129766	87141401	D	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:20471]
ENSCJAG00000004809	NOVEL	protein_coding	ENSCJAG00000004809	chromosome:C_jacchus3.2.1:8:1:128169293:1	87167296	87168501	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008766}  [Source:UniProtKB/TrEMBL;Acc:F7HM83]
ENSCJAG00000021176	KNOWN_BY_PROJECTION	protein_coding	UCHL3	chromosome:C_jacchus3.2.1:1:1:210400635:1	39091264	39124992	R	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:HGNC:12515]
ENSCJAG00000004788	KNOWN_BY_PROJECTION	protein_coding	ANKRD7	chromosome:C_jacchus3.2.1:8:1:128169293:1	87173418	87191903	D	ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
ENSCJAG00000021175	KNOWN	protein_coding	COMMD6	chromosome:C_jacchus3.2.1:1:1:210400635:1	39147990	39161450	D	COMM domain-containing protein 6 isoform b {ECO:0000313|EMBL:JAB03388.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049235}  [Source:UniProtKB/TrEMBL;Acc:F6VIB9]
ENSCJAG00000035372	NOVEL	protein_coding	ENSCJAG00000035372	chromosome:C_jacchus3.2.1:8:1:128169293:1	87252856	87253590	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008394}  [Source:UniProtKB/TrEMBL;Acc:F7IPU8]
ENSCJAG00000032801	NOVEL	protein_coding	ENSCJAG00000032801	chromosome:C_jacchus3.2.1:8:1:128169293:1	87319183	87319619	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047522}  [Source:UniProtKB/TrEMBL;Acc:F7I1K9]
ENSCJAG00000014084	KNOWN	protein_coding	VIPR2	chromosome:C_jacchus3.2.1:8:1:128169293:1	87465123	87569166	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025909}; Vasoactive intestinal polypeptide receptor 2 {ECO:0000313|EMBL:JAB10834.1}  [Source:UniProtKB/TrEMBL;Acc:F6XPH6]
ENSCJAG00000014109	KNOWN_BY_PROJECTION	protein_coding	WDR60	chromosome:C_jacchus3.2.1:8:1:128169293:1	87667466	87756559	R	WD repeat domain 60 [Source:HGNC Symbol;Acc:HGNC:21862]
ENSCJAG00000021156	KNOWN_BY_PROJECTION	protein_coding	TBC1D4	chromosome:C_jacchus3.2.1:1:1:210400635:1	39199971	39382129	D	TBC1 domain family, member 4 [Source:HGNC Symbol;Acc:HGNC:19165]
ENSCJAG00000014123	KNOWN_BY_PROJECTION	protein_coding	ESYT2	chromosome:C_jacchus3.2.1:8:1:128169293:1	87791325	87895779	D	extended synaptotagmin-like protein 2 [Source:HGNC Symbol;Acc:HGNC:22211]
ENSCJAG00000012611	NOVEL	protein_coding	APOA5	chromosome:C_jacchus3.2.1:11:1:130397257:1	14354287	14357592	R	Apolipoprotein AV (Predicted) {ECO:0000313|EMBL:ABZ10533.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023099}  [Source:UniProtKB/TrEMBL;Acc:B0KWQ9]
ENSCJAG00000012625	NOVEL	protein_coding	APOA4	chromosome:C_jacchus3.2.1:11:1:130397257:1	14380664	14383256	R	Apolipoprotein A-IV (Predicted) {ECO:0000313|EMBL:ABZ10534.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023126}  [Source:UniProtKB/TrEMBL;Acc:B0KWR0]
ENSCJAG00000012639	KNOWN_BY_PROJECTION	protein_coding	APOC3	chromosome:C_jacchus3.2.1:11:1:130397257:1	14390723	14393715	D	apolipoprotein C-III [Source:HGNC Symbol;Acc:HGNC:610]
ENSCJAG00000012644	KNOWN_BY_PROJECTION	protein_coding	APOA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	14396309	14397956	R	apolipoprotein A-I [Source:HGNC Symbol;Acc:HGNC:600]
ENSCJAG00000014233	KNOWN_BY_PROJECTION	protein_coding	ATP1B4	chromosome:C_jacchus3.2.1:8:1:128169293:1	88214921	88231681	D	ATPase, Na+/K+ transporting, beta 4 polypeptide [Source:HGNC Symbol;Acc:HGNC:808]
ENSCJAG00000035404	NOVEL	protein_coding	ENSCJAG00000035404	chromosome:C_jacchus3.2.1:8:1:128169293:1	88934524	88936147	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042076}  [Source:UniProtKB/TrEMBL;Acc:F6RGN6]
ENSCJAG00000005334	NOVEL	protein_coding	ENSCJAG00000005334	chromosome:C_jacchus3.2.1:8:1:128169293:1	89018341	89019959	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009745}  [Source:UniProtKB/TrEMBL;Acc:F7GWX4]
ENSCJAG00000012659	KNOWN_BY_PROJECTION	protein_coding	SIK3	chromosome:C_jacchus3.2.1:11:1:130397257:1	14408253	14461359	R	SIK family kinase 3 [Source:HGNC Symbol;Acc:HGNC:29165]
ENSCJAG00000031531	NOVEL	protein_coding	ENSCJAG00000031531	chromosome:C_jacchus3.2.1:1:1:210400635:1	40240297	40241071	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052112}  [Source:UniProtKB/TrEMBL;Acc:F7I2R6]
ENSCJAG00000005320	KNOWN_BY_PROJECTION	protein_coding	PTPRN2	chromosome:C_jacchus3.2.1:8:1:128169293:1	89031743	89102143	D	protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:9677]
ENSCJAG00000033059	NOVEL	protein_coding	ENSCJAG00000033059	chromosome:C_jacchus3.2.1:8:1:128169293:1	89175088	89175476	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043757}  [Source:UniProtKB/TrEMBL;Acc:F7IRJ4]
ENSCJAG00000021151	KNOWN	protein_coding	KLF12	chromosome:C_jacchus3.2.1:1:1:210400635:1	40496407	40976696	D	Krueppel-like factor 12 {ECO:0000313|EMBL:JAB14991.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039376}  [Source:UniProtKB/TrEMBL;Acc:F7H530]
ENSCJAG00000021150	NOVEL	pseudogene	ENSCJAG00000021150	chromosome:C_jacchus3.2.1:1:1:210400635:1	41419787	41420055	R	<no descrition>
ENSCJAG00000005288	KNOWN	protein_coding	DNAJB6	chromosome:C_jacchus3.2.1:8:1:128169293:1	89209406	89273548	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013589}  [Source:UniProtKB/TrEMBL;Acc:F6X5J7]
ENSCJAG00000021146	KNOWN	protein_coding	KLF5	chromosome:C_jacchus3.2.1:1:1:210400635:1	41590717	41612539	R	Krueppel-like factor 5 {ECO:0000313|EMBL:JAB06960.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045020}  [Source:UniProtKB/TrEMBL;Acc:F6U556]
ENSCJAG00000012696	NOVEL	pseudogene	ENSCJAG00000012696	chromosome:C_jacchus3.2.1:11:1:130397257:1	14609863	14610661	D	<no descrition>
ENSCJAG00000012697	NOVEL	pseudogene	ENSCJAG00000012697	chromosome:C_jacchus3.2.1:11:1:130397257:1	14705277	14706016	R	<no descrition>
ENSCJAG00000004298	KNOWN_BY_PROJECTION	protein_coding	UBE3C	chromosome:C_jacchus3.2.1:8:1:128169293:1	89384698	89482245	R	ubiquitin protein ligase E3C [Source:HGNC Symbol;Acc:HGNC:16803]
ENSCJAG00000012698	KNOWN_BY_PROJECTION	protein_coding	PAFAH1B2	chromosome:C_jacchus3.2.1:11:1:130397257:1	14728911	14761589	D	platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) [Source:HGNC Symbol;Acc:HGNC:8575]
ENSCJAG00000004326	KNOWN_BY_PROJECTION	protein_coding	MNX1	chromosome:C_jacchus3.2.1:8:1:128169293:1	89640311	89644642	D	motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]
ENSCJAG00000004336	KNOWN	protein_coding	NOM1	chromosome:C_jacchus3.2.1:8:1:128169293:1	89682872	89703877	R	Nucleolar MIF4G domain-containing protein 1 {ECO:0000313|EMBL:JAB38328.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007851}  [Source:UniProtKB/TrEMBL;Acc:F7CMY4]
ENSCJAG00000021145	KNOWN_BY_PROJECTION	protein_coding	PSMD10	chromosome:C_jacchus3.2.1:1:1:210400635:1	41630212	41631679	R	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:HGNC:9555]
ENSCJAG00000004344	KNOWN	protein_coding	LMBR1	chromosome:C_jacchus3.2.1:8:1:128169293:1	89755270	89971651	D	Limb region 1 protein homolog {ECO:0000313|EMBL:JAB05735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042321}  [Source:UniProtKB/TrEMBL;Acc:F6WVI3]
ENSCJAG00000021133	KNOWN	protein_coding	PIBF1	chromosome:C_jacchus3.2.1:1:1:210400635:1	41648889	41912667	R	Progesterone-induced-blocking factor 1 {ECO:0000313|EMBL:JAB09575.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039353}  [Source:UniProtKB/TrEMBL;Acc:F7HAB3]
ENSCJAG00000004357	KNOWN_BY_PROJECTION	protein_coding	RNF32	chromosome:C_jacchus3.2.1:8:1:128169293:1	89979611	90020031	R	ring finger protein 32 [Source:HGNC Symbol;Acc:HGNC:17118]
ENSCJAG00000034688	NOVEL	protein_coding	ENSCJAG00000034688	chromosome:C_jacchus3.2.1:8:1:128169293:1	90020133	90020696	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047573}  [Source:UniProtKB/TrEMBL;Acc:F7E3P0]
ENSCJAG00000020423	KNOWN_BY_PROJECTION	protein_coding	SHH	chromosome:C_jacchus3.2.1:8:1:128169293:1	90875878	90886405	D	sonic hedgehog [Source:HGNC Symbol;Acc:HGNC:10848]
ENSCJAG00000012713	KNOWN_BY_PROJECTION	protein_coding	SIDT2	chromosome:C_jacchus3.2.1:11:1:130397257:1	14764290	14783001	D	SID1 transmembrane family, member 2 [Source:HGNC Symbol;Acc:HGNC:24272]
ENSCJAG00000020427	KNOWN_BY_PROJECTION	protein_coding	RBM33	chromosome:C_jacchus3.2.1:8:1:128169293:1	90909257	91022607	R	RNA binding motif protein 33 [Source:HGNC Symbol;Acc:HGNC:27223]
ENSCJAG00000020431	NOVEL	protein_coding	ENSCJAG00000020431	chromosome:C_jacchus3.2.1:8:1:128169293:1	91045057	91062994	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037960}  [Source:UniProtKB/TrEMBL;Acc:F7CQL5]
ENSCJAG00000017443	KNOWN	protein_coding	CNPY1	chromosome:C_jacchus3.2.1:8:1:128169293:1	91168970	91176759	D	Protein canopy homolog 1 {ECO:0000313|EMBL:JAB44489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032129}  [Source:UniProtKB/TrEMBL;Acc:F7GL74]
ENSCJAG00000017450	KNOWN_BY_PROJECTION	protein_coding	EN2	chromosome:C_jacchus3.2.1:8:1:128169293:1	91217701	91223858	R	engrailed homeobox 2 [Source:HGNC Symbol;Acc:HGNC:3343]
ENSCJAG00000012755	KNOWN	protein_coding	TAGLN	chromosome:C_jacchus3.2.1:11:1:130397257:1	14785196	14790971	D	Transgelin {ECO:0000313|EMBL:JAB12810.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023368}  [Source:UniProtKB/TrEMBL;Acc:F7I1Q9]
ENSCJAG00000017472	NOVEL	pseudogene	ENSCJAG00000017472	chromosome:C_jacchus3.2.1:8:1:128169293:1	91325152	91325592	D	<no descrition>
ENSCJAG00000032321	NOVEL	protein_coding	ENSCJAG00000032321	chromosome:C_jacchus3.2.1:1:1:210400635:1	41712836	41713246	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043788}  [Source:UniProtKB/TrEMBL;Acc:F7IP36]
ENSCJAG00000018517	KNOWN	protein_coding	INSIG1	chromosome:C_jacchus3.2.1:8:1:128169293:1	91344205	91358338	R	Insulin-induced gene protein {ECO:0000256|RuleBase:RU241113}  [Source:UniProtKB/TrEMBL;Acc:F6Y9H0]
ENSCJAG00000031971	KNOWN	protein_coding	BOD1	chromosome:C_jacchus3.2.1:1:1:210400635:1	41745525	41755964	R	Biorientation of chromosomes in cell division protein 1 isoform a {ECO:0000313|EMBL:JAB05502.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039362}  [Source:UniProtKB/TrEMBL;Acc:F7HA61]
ENSCJAG00000000158	KNOWN_BY_PROJECTION	protein_coding	HTR5A	chromosome:C_jacchus3.2.1:8:1:128169293:1	91526599	91540116	R	5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled [Source:HGNC Symbol;Acc:HGNC:5300]
ENSCJAG00000000160	NOVEL	protein_coding	ENSCJAG00000000160	chromosome:C_jacchus3.2.1:8:1:128169293:1	91539713	91541910	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000266}  [Source:UniProtKB/TrEMBL;Acc:F7GN07]
ENSCJAG00000012763	KNOWN	protein_coding	PCSK7	chromosome:C_jacchus3.2.1:11:1:130397257:1	14791273	14816869	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023435}  [Source:UniProtKB/TrEMBL;Acc:F7ISH0]
ENSCJAG00000000161	KNOWN_BY_PROJECTION	protein_coding	PAXIP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	91590901	91648460	D	PAX interacting (with transcription-activation domain) protein 1 [Source:HGNC Symbol;Acc:HGNC:8624]
ENSCJAG00000021143	KNOWN_BY_PROJECTION	protein_coding	DDX18	chromosome:C_jacchus3.2.1:1:1:210400635:1	41768360	41769677	R	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:HGNC Symbol;Acc:HGNC:2741]
ENSCJAG00000032616	NOVEL	pseudogene	ENSCJAG00000032616	chromosome:C_jacchus3.2.1:1:1:210400635:1	41791810	41792366	R	<no descrition>
ENSCJAG00000035191	NOVEL	protein_coding	ENSCJAG00000035191	chromosome:C_jacchus3.2.1:8:1:128169293:1	91647997	91665706	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046448}  [Source:UniProtKB/TrEMBL;Acc:F7IMM1]
ENSCJAG00000000167	KNOWN_BY_PROJECTION	protein_coding	DPP6	chromosome:C_jacchus3.2.1:8:1:128169293:1	91712749	92164408	R	dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:HGNC:3010]
ENSCJAG00000021117	KNOWN	protein_coding	DIS3	chromosome:C_jacchus3.2.1:1:1:210400635:1	41912663	41935737	D	Exosome complex exonuclease RRP44 isoform a {ECO:0000313|EMBL:JAB04015.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039326}  [Source:UniProtKB/TrEMBL;Acc:F7CVL7]
ENSCJAG00000019650	KNOWN	protein_coding	ACTR3B	chromosome:C_jacchus3.2.1:8:1:128169293:1	93858973	93961866	R	Actin-related protein 3B isoform 1 {ECO:0000313|EMBL:JAB15107.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036506}  [Source:UniProtKB/TrEMBL;Acc:F7GSR6]
ENSCJAG00000032080	KNOWN	protein_coding	XRCC2	chromosome:C_jacchus3.2.1:8:1:128169293:1	94032254	94069295	D	DNA repair protein XRCC2 {ECO:0000313|EMBL:JAB11706.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036511}  [Source:UniProtKB/TrEMBL;Acc:F7GSK5]
ENSCJAG00000019669	NOVEL	pseudogene	ENSCJAG00000019669	chromosome:C_jacchus3.2.1:8:1:128169293:1	94272134	94273780	R	<no descrition>
ENSCJAG00000012793	KNOWN	protein_coding	RNF214	chromosome:C_jacchus3.2.1:11:1:130397257:1	14819115	14878690	D	RING finger protein 214 {ECO:0000313|EMBL:JAB23533.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023510}  [Source:UniProtKB/TrEMBL;Acc:F7IB19]
ENSCJAG00000012843	NOVEL	pseudogene	ENSCJAG00000012843	chromosome:C_jacchus3.2.1:11:1:130397257:1	14828106	14828590	D	<no descrition>
ENSCJAG00000019672	KNOWN_BY_PROJECTION	protein_coding	KMT2C	chromosome:C_jacchus3.2.1:8:1:128169293:1	94284282	94584502	D	lysine (K)-specific methyltransferase 2C [Source:HGNC Symbol;Acc:HGNC:13726]
ENSCJAG00000012845	KNOWN	protein_coding	BACE1	chromosome:C_jacchus3.2.1:11:1:130397257:1	14878715	14909373	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023609}  [Source:UniProtKB/TrEMBL;Acc:F7D6D8]
ENSCJAG00000021112	KNOWN_BY_PROJECTION	protein_coding	BORA	chromosome:C_jacchus3.2.1:1:1:210400635:1	41939077	41970156	R	bora, aurora kinase A activator [Source:HGNC Symbol;Acc:HGNC:24724]
ENSCJAG00000019731	NOVEL	pseudogene	ENSCJAG00000019731	chromosome:C_jacchus3.2.1:8:1:128169293:1	94316488	94317040	R	<no descrition>
ENSCJAG00000021109	KNOWN	protein_coding	MZT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	41970353	41997108	D	Mitotic-spindle organizing protein 1 {ECO:0000313|EMBL:JAB05128.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039281}  [Source:UniProtKB/TrEMBL;Acc:F7F1E1]
ENSCJAG00000019732	KNOWN	protein_coding	GALNT11	chromosome:C_jacchus3.2.1:8:1:128169293:1	94600506	94677041	R	Polypeptide N-acetylgalactosaminyltransferase 11 {ECO:0000313|EMBL:JAB06582.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036670}  [Source:UniProtKB/TrEMBL;Acc:F6TAE1]
ENSCJAG00000021107	NOVEL	protein_coding	ENSCJAG00000021107	chromosome:C_jacchus3.2.1:1:1:210400635:1	42621118	42622968	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039276}  [Source:UniProtKB/TrEMBL;Acc:F7F1J8]
ENSCJAG00000019740	KNOWN_BY_PROJECTION	protein_coding	GALNTL5	chromosome:C_jacchus3.2.1:8:1:128169293:1	94684718	94752327	R	polypeptide N-acetylgalactosaminyltransferase-like 5 [Source:HGNC Symbol;Acc:HGNC:21725]
ENSCJAG00000021093	KNOWN_BY_PROJECTION	protein_coding	DACH1	chromosome:C_jacchus3.2.1:1:1:210400635:1	42885710	43326677	D	dachshund family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2663]
ENSCJAG00000020422	KNOWN	protein_coding	PRKAG2	chromosome:C_jacchus3.2.1:8:1:128169293:1	95051704	95250262	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045975}  [Source:UniProtKB/TrEMBL;Acc:F6SEG9]
ENSCJAG00000012899	KNOWN_BY_PROJECTION	protein_coding	CEP164	chromosome:C_jacchus3.2.1:11:1:130397257:1	14930889	15000741	D	centrosomal protein 164kDa [Source:HGNC Symbol;Acc:HGNC:29182]
ENSCJAG00000020414	KNOWN	protein_coding	RHEB	chromosome:C_jacchus3.2.1:8:1:128169293:1	95280956	95329654	D	GTP-binding protein Rheb {ECO:0000313|EMBL:JAB10158.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037950}  [Source:UniProtKB/TrEMBL;Acc:F6UP96]
ENSCJAG00000021105	NOVEL	pseudogene	ENSCJAG00000021105	chromosome:C_jacchus3.2.1:1:1:210400635:1	43055062	43055408	R	<no descrition>
ENSCJAG00000031774	NOVEL	pseudogene	ENSCJAG00000031774	chromosome:C_jacchus3.2.1:1:1:210400635:1	43405326	43406217	R	<no descrition>
ENSCJAG00000032991	NOVEL	pseudogene	ENSCJAG00000032991	chromosome:C_jacchus3.2.1:1:1:210400635:1	43921902	43922653	R	<no descrition>
ENSCJAG00000020410	KNOWN_BY_PROJECTION	protein_coding	CRYGN	chromosome:C_jacchus3.2.1:8:1:128169293:1	95362699	95373592	D	crystallin, gamma N [Source:HGNC Symbol;Acc:HGNC:20458]
ENSCJAG00000020408	KNOWN	protein_coding	WDR86	chromosome:C_jacchus3.2.1:8:1:128169293:1	95393374	95422827	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037938}; WD repeat-containing protein 86 {ECO:0000313|EMBL:JAB07265.1}  [Source:UniProtKB/TrEMBL;Acc:F6VBN7]
ENSCJAG00000016532	KNOWN	protein_coding	KLHL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	44718810	45151126	D	Kelch-like protein 1 {ECO:0000313|EMBL:JAB32269.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030467}  [Source:UniProtKB/TrEMBL;Acc:F7A7K5]
ENSCJAG00000020400	KNOWN_BY_PROJECTION	protein_coding	NUB1	chromosome:C_jacchus3.2.1:8:1:128169293:1	95426033	95465346	R	negative regulator of ubiquitin-like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]
ENSCJAG00000032534	NOVEL	protein_coding	ENSCJAG00000032534	chromosome:C_jacchus3.2.1:1:1:210400635:1	45449596	45450252	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051542}  [Source:UniProtKB/TrEMBL;Acc:F6W1U8]
ENSCJAG00000016527	NOVEL	protein_coding	ENSCJAG00000016527	chromosome:C_jacchus3.2.1:1:1:210400635:1	45499126	45500881	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030403}  [Source:UniProtKB/TrEMBL;Acc:F7CLW3]
ENSCJAG00000021950	NOVEL	pseudogene	ENSCJAG00000021950	chromosome:C_jacchus3.2.1:1:1:210400635:1	46723205	46725188	R	<no descrition>
ENSCJAG00000016402	KNOWN_BY_PROJECTION	protein_coding	PCDH9	chromosome:C_jacchus3.2.1:1:1:210400635:1	47638163	47644107	D	protocadherin 9 [Source:HGNC Symbol;Acc:HGNC:8661]
ENSCJAG00000016415	KNOWN	protein_coding	PCDH20	chromosome:C_jacchus3.2.1:1:1:210400635:1	53494408	53512094	D	Protocadherin-20 {ECO:0000313|EMBL:JAB25914.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014480}  [Source:UniProtKB/TrEMBL;Acc:F7HQ41]
ENSCJAG00000020387	KNOWN	protein_coding	SMARCD3	chromosome:C_jacchus3.2.1:8:1:128169293:1	95522516	95562662	D	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform 2 {ECO:0000313|EMBL:JAB23418.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037917}  [Source:UniProtKB/TrEMBL;Acc:F6VWZ5]
ENSCJAG00000012950	KNOWN_BY_PROJECTION	protein_coding	DSCAML1	chromosome:C_jacchus3.2.1:11:1:130397257:1	15014797	15391993	R	Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
ENSCJAG00000020380	KNOWN_BY_PROJECTION	protein_coding	CHPF2	chromosome:C_jacchus3.2.1:8:1:128169293:1	95562808	95568660	R	chondroitin polymerizing factor 2 [Source:HGNC Symbol;Acc:HGNC:29270]
ENSCJAG00000020371	KNOWN_BY_PROJECTION	protein_coding	ABCF2	chromosome:C_jacchus3.2.1:8:1:128169293:1	95575122	95593450	D	ATP-binding cassette, sub-family F (GCN20), member 2 [Source:HGNC Symbol;Acc:HGNC:71]
ENSCJAG00000003853	KNOWN	protein_coding	TDRD3	chromosome:C_jacchus3.2.1:1:1:210400635:1	54418806	54610001	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007064}  [Source:UniProtKB/TrEMBL;Acc:F6U3G6]
ENSCJAG00000020368	NOVEL	protein_coding	ENSCJAG00000020368	chromosome:C_jacchus3.2.1:8:1:128169293:1	95596491	95614530	D	<no descrition>
ENSCJAG00000020364	KNOWN_BY_PROJECTION	protein_coding	ASB10	chromosome:C_jacchus3.2.1:8:1:128169293:1	95618609	95629569	D	ankyrin repeat and SOCS box containing 10 [Source:HGNC Symbol;Acc:HGNC:17185]
ENSCJAG00000020361	KNOWN_BY_PROJECTION	protein_coding	GBX1	chromosome:C_jacchus3.2.1:8:1:128169293:1	95637761	95657933	D	gastrulation brain homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4185]
ENSCJAG00000020349	KNOWN_BY_PROJECTION	protein_coding	AGAP3	chromosome:C_jacchus3.2.1:8:1:128169293:1	95661367	95689738	R	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 [Source:HGNC Symbol;Acc:HGNC:16923]
ENSCJAG00000020345	KNOWN	protein_coding	TMUB1	chromosome:C_jacchus3.2.1:8:1:128169293:1	95727584	95730059	D	Transmembrane and ubiquitin-like domain-containing protein 1 {ECO:0000313|EMBL:JAB09183.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037817}  [Source:UniProtKB/TrEMBL;Acc:F7AVU2]
ENSCJAG00000003729	KNOWN_BY_PROJECTION	protein_coding	DIAPH3	chromosome:C_jacchus3.2.1:1:1:210400635:1	54841520	55358400	D	diaphanous-related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]
ENSCJAG00000020307	KNOWN	protein_coding	FASTK	chromosome:C_jacchus3.2.1:8:1:128169293:1	95730278	95735072	D	Fas-activated serine/threonine kinase isoform 1 {ECO:0000313|EMBL:JAB07206.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037806}  [Source:UniProtKB/TrEMBL;Acc:F7BE12]
ENSCJAG00000013044	KNOWN	protein_coding	FXYD6	chromosome:C_jacchus3.2.1:11:1:130397257:1	15429934	15470245	R	FXYD domain-containing ion transport regulator 6 {ECO:0000313|EMBL:JAB09946.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023949}  [Source:UniProtKB/TrEMBL;Acc:F7FL84]
ENSCJAG00000020270	KNOWN_BY_PROJECTION	protein_coding	SLC4A2	chromosome:C_jacchus3.2.1:8:1:128169293:1	95735133	95752672	R	solute carrier family 4 (anion exchanger), member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
ENSCJAG00000013052	KNOWN_BY_PROJECTION	protein_coding	TMPRSS13	chromosome:C_jacchus3.2.1:11:1:130397257:1	15495044	15514393	R	transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
ENSCJAG00000013084	KNOWN_BY_PROJECTION	protein_coding	IL10RA	chromosome:C_jacchus3.2.1:11:1:130397257:1	15580963	15595372	D	interleukin 10 receptor, alpha [Source:HGNC Symbol;Acc:HGNC:5964]
ENSCJAG00000020258	KNOWN	protein_coding	CDK5	chromosome:C_jacchus3.2.1:8:1:128169293:1	95754354	95758486	D	Cyclin-dependent kinase 5 isoform 1 {ECO:0000313|EMBL:JAB07832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037671}  [Source:UniProtKB/TrEMBL;Acc:F6ZE37]
ENSCJAG00000013100	KNOWN_BY_PROJECTION	protein_coding	TMPRSS4	chromosome:C_jacchus3.2.1:11:1:130397257:1	15684238	15708244	D	transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
ENSCJAG00000013114	KNOWN_BY_PROJECTION	protein_coding	SCN4B	chromosome:C_jacchus3.2.1:11:1:130397257:1	15725021	15746635	R	sodium channel, voltage gated, type IV beta subunit [Source:HGNC Symbol;Acc:HGNC:10592]
ENSCJAG00000036249	KNOWN_BY_PROJECTION	protein_coding	ASIC3	chromosome:C_jacchus3.2.1:8:1:128169293:1	95759545	95764366	R	acid sensing (proton gated) ion channel 3 [Source:HGNC Symbol;Acc:HGNC:101]
ENSCJAG00000013122	KNOWN_BY_PROJECTION	protein_coding	SCN2B	chromosome:C_jacchus3.2.1:11:1:130397257:1	15760131	15770838	R	sodium channel, voltage gated, type II beta subunit [Source:HGNC Symbol;Acc:HGNC:10589]
ENSCJAG00000013130	KNOWN_BY_PROJECTION	protein_coding	AMICA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	15784513	15820513	R	adhesion molecule, interacts with CXADR antigen 1 [Source:HGNC Symbol;Acc:HGNC:19084]
ENSCJAG00000014524	NOVEL	protein_coding	ENSCJAG00000014524	chromosome:C_jacchus3.2.1:1:1:210400635:1	55509626	55510101	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048096}  [Source:UniProtKB/TrEMBL;Acc:F7EYC5]
ENSCJAG00000003715	KNOWN	protein_coding	PCDH17	chromosome:C_jacchus3.2.1:1:1:210400635:1	57339659	57439016	R	Protocadherin-17 {ECO:0000313|EMBL:JAB22878.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006745}  [Source:UniProtKB/TrEMBL;Acc:F7F2V1]
ENSCJAG00000031621	NOVEL	pseudogene	ENSCJAG00000031621	chromosome:C_jacchus3.2.1:1:1:210400635:1	57711348	57712114	D	<no descrition>
ENSCJAG00000003713	NOVEL	protein_coding	ENSCJAG00000003713	chromosome:C_jacchus3.2.1:1:1:210400635:1	57870764	57874452	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006728}  [Source:UniProtKB/TrEMBL;Acc:F7F3A7]
ENSCJAG00000006189	NOVEL	protein_coding	ENSCJAG00000006189	chromosome:C_jacchus3.2.1:1:1:210400635:1	58789467	58790385	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043471}  [Source:UniProtKB/TrEMBL;Acc:F7I5J2]
ENSCJAG00000013156	NOVEL	pseudogene	ENSCJAG00000013156	chromosome:C_jacchus3.2.1:11:1:130397257:1	15810172	15810727	R	<no descrition>
ENSCJAG00000003709	NOVEL	protein_coding	ENSCJAG00000003709	chromosome:C_jacchus3.2.1:1:1:210400635:1	59297484	59298135	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006725}  [Source:UniProtKB/TrEMBL;Acc:F7F3B9]
ENSCJAG00000013157	KNOWN_BY_PROJECTION	protein_coding	MPZL3	chromosome:C_jacchus3.2.1:11:1:130397257:1	15830485	15849846	R	myelin protein zero-like 3 [Source:HGNC Symbol;Acc:HGNC:27279]
ENSCJAG00000003703	NOVEL	protein_coding	ENSCJAG00000003703	chromosome:C_jacchus3.2.1:1:1:210400635:1	59615934	59619105	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006718}  [Source:UniProtKB/TrEMBL;Acc:F7F3E5]
ENSCJAG00000003699	NOVEL	pseudogene	ENSCJAG00000003699	chromosome:C_jacchus3.2.1:1:1:210400635:1	60910038	60910443	D	<no descrition>
ENSCJAG00000003695	NOVEL	protein_coding	ENSCJAG00000003695	chromosome:C_jacchus3.2.1:1:1:210400635:1	61822227	61824855	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006707}  [Source:UniProtKB/TrEMBL;Acc:F7F3J2]
ENSCJAG00000003690	KNOWN_BY_PROJECTION	protein_coding	OLFM4	chromosome:C_jacchus3.2.1:1:1:210400635:1	61977038	61998801	R	olfactomedin 4 [Source:HGNC Symbol;Acc:HGNC:17190]
ENSCJAG00000013163	KNOWN	protein_coding	MPZL2	chromosome:C_jacchus3.2.1:11:1:130397257:1	15850869	15863112	R	Myelin protein zero-like protein 2 {ECO:0000313|EMBL:JAB10756.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024191}  [Source:UniProtKB/TrEMBL;Acc:F7H8W2]
ENSCJAG00000003666	KNOWN_BY_PROJECTION	protein_coding	PCDH8	chromosome:C_jacchus3.2.1:1:1:210400635:1	62184148	62188186	D	protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]
ENSCJAG00000020233	KNOWN_BY_PROJECTION	protein_coding	ABCB8	chromosome:C_jacchus3.2.1:8:1:128169293:1	95759548	95784248	R	ATP-binding cassette, sub-family B (MDR/TAP), member 8 [Source:HGNC Symbol;Acc:HGNC:49]
ENSCJAG00000013183	KNOWN	protein_coding	CD3E	chromosome:C_jacchus3.2.1:11:1:130397257:1	15903265	15914677	D	Callithrix jacchus CD3e molecule, epsilon (CD3-TCR complex) (CD3E), mRNA. [Source:RefSeq mRNA;Acc:NM_001257220]
ENSCJAG00000003648	KNOWN	protein_coding	LECT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	62298660	62334840	D	Leukocyte cell-derived chemotaxin 1 isoform 1 {ECO:0000313|EMBL:JAB16905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006631}  [Source:UniProtKB/TrEMBL;Acc:F7HB30]
ENSCJAG00000013205	KNOWN_BY_PROJECTION	protein_coding	CD3D	chromosome:C_jacchus3.2.1:11:1:130397257:1	15931712	15935396	R	CD3d molecule, delta (CD3-TCR complex) [Source:HGNC Symbol;Acc:HGNC:1673]
ENSCJAG00000003604	KNOWN	protein_coding	SUGT1	chromosome:C_jacchus3.2.1:1:1:210400635:1	62350595	62388787	R	Suppressor of G2 allele of SKP1 homolog isoform SGT1A {ECO:0000313|EMBL:JAB07784.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006607}  [Source:UniProtKB/TrEMBL;Acc:F7HBD7]
ENSCJAG00000013216	KNOWN_BY_PROJECTION	protein_coding	CD3G	chromosome:C_jacchus3.2.1:11:1:130397257:1	15937012	15945877	D	CD3g molecule, gamma (CD3-TCR complex) [Source:HGNC Symbol;Acc:HGNC:1675]
ENSCJAG00000020219	KNOWN_BY_PROJECTION	protein_coding	ATG9B	chromosome:C_jacchus3.2.1:8:1:128169293:1	95787534	95800537	D	autophagy related 9B [Source:HGNC Symbol;Acc:HGNC:21899]
ENSCJAG00000013223	KNOWN_BY_PROJECTION	protein_coding	UBE4A	chromosome:C_jacchus3.2.1:11:1:130397257:1	15951051	15992598	D	ubiquitination factor E4A [Source:HGNC Symbol;Acc:HGNC:12499]
ENSCJAG00000033584	KNOWN_BY_PROJECTION	protein_coding	KRBOX4	chromosome:C_jacchus3.2.1:1:1:210400635:1	62468017	62468470	D	KRAB box domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26007]
ENSCJAG00000016953	NOVEL	protein_coding	ENSCJAG00000016953	chromosome:C_jacchus3.2.1:1:1:210400635:1	62535657	62556214	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031183}  [Source:UniProtKB/TrEMBL;Acc:F7IM57]
ENSCJAG00000013281	KNOWN	protein_coding	ENSCJAG00000013281	chromosome:C_jacchus3.2.1:11:1:130397257:1	15998411	16007408	D	ATP synthase subunit g, mitochondrial {ECO:0000313|EMBL:JAB22735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024382}  [Source:UniProtKB/TrEMBL;Acc:F7GSV8]
ENSCJAG00000020179	KNOWN	protein_coding	ENOS	chromosome:C_jacchus3.2.1:8:1:128169293:1	95798353	95821754	R	Nitric oxide synthase {ECO:0000256|PIRNR:PIRNR000333}  [Source:UniProtKB/TrEMBL;Acc:F6VF63]
ENSCJAG00000009896	KNOWN_BY_PROJECTION	protein_coding	VPS36	chromosome:C_jacchus3.2.1:1:1:210400635:1	62559626	62603259	D	vacuolar protein sorting 36 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:20312]
ENSCJAG00000013288	KNOWN_BY_PROJECTION	protein_coding	KMT2A	chromosome:C_jacchus3.2.1:11:1:130397257:1	16036968	16131091	D	lysine (K)-specific methyltransferase 2A [Source:HGNC Symbol;Acc:HGNC:7132]
ENSCJAG00000020150	KNOWN_BY_PROJECTION	protein_coding	KCNH2	chromosome:C_jacchus3.2.1:8:1:128169293:1	95842857	95879954	D	potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
ENSCJAG00000008185	NOVEL	protein_coding	ENSCJAG00000008185	chromosome:C_jacchus3.2.1:1:1:210400635:1	62608688	62675239	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049692}  [Source:UniProtKB/TrEMBL;Acc:F6YE99]
ENSCJAG00000011817	KNOWN_BY_PROJECTION	protein_coding	NEK3	chromosome:C_jacchus3.2.1:1:1:210400635:1	62686240	62707541	D	NIMA-related kinase 3 [Source:HGNC Symbol;Acc:HGNC:7746]
ENSCJAG00000011320	KNOWN_BY_PROJECTION	protein_coding	NEK5	chromosome:C_jacchus3.2.1:1:1:210400635:1	62717095	62767730	D	NIMA-related kinase 5 [Source:HGNC Symbol;Acc:HGNC:7748]
ENSCJAG00000020136	KNOWN	protein_coding	ABP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	95972396	96045856	R	Amine oxidase {ECO:0000256|RuleBase:RU000672}  [Source:UniProtKB/TrEMBL;Acc:F7CDQ6]
ENSCJAG00000020147	KNOWN_BY_PROJECTION	protein_coding	TMEM176A	chromosome:C_jacchus3.2.1:8:1:128169293:1	96031220	96034821	R	transmembrane protein 176A [Source:HGNC Symbol;Acc:HGNC:24930]
ENSCJAG00000020128	KNOWN_BY_PROJECTION	protein_coding	TMEM176B	chromosome:C_jacchus3.2.1:8:1:128169293:1	96034992	96045951	D	transmembrane protein 176B [Source:HGNC Symbol;Acc:HGNC:29596]
ENSCJAG00000020126	KNOWN_BY_PROJECTION	protein_coding	GIMAP5	chromosome:C_jacchus3.2.1:8:1:128169293:1	96102600	96109358	R	GTPase, IMAP family member 5 [Source:HGNC Symbol;Acc:HGNC:18005]
ENSCJAG00000020125	NOVEL	protein_coding	ENSCJAG00000020125	chromosome:C_jacchus3.2.1:8:1:128169293:1	96126558	96137424	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037403}  [Source:UniProtKB/TrEMBL;Acc:F6W144]
ENSCJAG00000020120	KNOWN	protein_coding	GIMAP4	chromosome:C_jacchus3.2.1:8:1:128169293:1	96167951	96239778	R	GTPase IMAP family member 4 {ECO:0000313|EMBL:JAB01771.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037391}  [Source:UniProtKB/TrEMBL;Acc:F6XVX4]
ENSCJAG00000020121	KNOWN_BY_PROJECTION	protein_coding	GIMAP6	chromosome:C_jacchus3.2.1:8:1:128169293:1	96207082	96213708	D	GTPase, IMAP family member 6 [Source:HGNC Symbol;Acc:HGNC:21918]
ENSCJAG00000010517	NOVEL	protein_coding	ENSCJAG00000010517	chromosome:C_jacchus3.2.1:8:1:128169293:1	96258219	96261649	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019399}  [Source:UniProtKB/TrEMBL;Acc:F6Q1Z7]
ENSCJAG00000008347	KNOWN_BY_PROJECTION	protein_coding	ATP7B	chromosome:C_jacchus3.2.1:1:1:210400635:1	62788813	62882404	R	ATPase, Cu++ transporting, beta polypeptide [Source:HGNC Symbol;Acc:HGNC:870]
ENSCJAG00000010385	NOVEL	protein_coding	ENSCJAG00000010385	chromosome:C_jacchus3.2.1:8:1:128169293:1	96261307	96553600	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048832}  [Source:UniProtKB/TrEMBL;Acc:F6T8V9]
ENSCJAG00000013365	KNOWN_BY_PROJECTION	protein_coding	TTC36	chromosome:C_jacchus3.2.1:11:1:130397257:1	16136164	16139931	D	tetratricopeptide repeat domain 36 [Source:HGNC Symbol;Acc:HGNC:33708]
ENSCJAG00000010511	KNOWN_BY_PROJECTION	protein_coding	GIMAP8	chromosome:C_jacchus3.2.1:8:1:128169293:1	96288462	96310299	R	GTPase, IMAP family member 8 [Source:HGNC Symbol;Acc:HGNC:21792]
ENSCJAG00000013374	KNOWN	protein_coding	TMEM25	chromosome:C_jacchus3.2.1:11:1:130397257:1	16140166	16143677	D	Transmembrane protein 25 isoform 1 {ECO:0000313|EMBL:JAB28499.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024623}  [Source:UniProtKB/TrEMBL;Acc:F6PZL8]
ENSCJAG00000010483	KNOWN_BY_PROJECTION	protein_coding	REPIN1	chromosome:C_jacchus3.2.1:8:1:128169293:1	96362279	96404558	R	replication initiator 1 [Source:HGNC Symbol;Acc:HGNC:17922]
ENSCJAG00000010322	KNOWN_BY_PROJECTION	protein_coding	RARRES2	chromosome:C_jacchus3.2.1:8:1:128169293:1	96427178	96628646	D	retinoic acid receptor responder (tazarotene induced) 2 [Source:HGNC Symbol;Acc:HGNC:9868]
ENSCJAG00000021993	KNOWN	protein_coding	LRRC61	chromosome:C_jacchus3.2.1:8:1:128169293:1	96431112	96450793	R	Leucine-rich repeat-containing protein 61 {ECO:0000313|EMBL:JAB32362.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046012}  [Source:UniProtKB/TrEMBL;Acc:F7ABY5]
ENSCJAG00000010476	KNOWN_BY_PROJECTION	protein_coding	ZBED6CL	chromosome:C_jacchus3.2.1:8:1:128169293:1	96438368	96439076	R	ZBED6 C-terminal like [Source:HGNC Symbol;Acc:HGNC:21720]
ENSCJAG00000010462	KNOWN_BY_PROJECTION	protein_coding	ATP6V0E2	chromosome:C_jacchus3.2.1:8:1:128169293:1	96465859	96471761	R	ATPase, H+ transporting V0 subunit e2 [Source:HGNC Symbol;Acc:HGNC:21723]
ENSCJAG00000010460	NOVEL	pseudogene	ENSCJAG00000010460	chromosome:C_jacchus3.2.1:8:1:128169293:1	96471949	96472250	D	<no descrition>
ENSCJAG00000010440	KNOWN_BY_PROJECTION	protein_coding	ZNF862	chromosome:C_jacchus3.2.1:8:1:128169293:1	96481925	96507686	R	zinc finger protein 862 [Source:HGNC Symbol;Acc:HGNC:34519]
ENSCJAG00000034019	NOVEL	protein_coding	ENSCJAG00000034019	chromosome:C_jacchus3.2.1:8:1:128169293:1	96565348	96569384	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045546}  [Source:UniProtKB/TrEMBL;Acc:F6SU83]
ENSCJAG00000010366	KNOWN	protein_coding	ZNF467	chromosome:C_jacchus3.2.1:8:1:128169293:1	96572664	96581377	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019115}; Zinc finger protein 467 {ECO:0000313|EMBL:JAB04992.1}  [Source:UniProtKB/TrEMBL;Acc:F6RYA0]
ENSCJAG00000010331	KNOWN_BY_PROJECTION	protein_coding	KRBA1	chromosome:C_jacchus3.2.1:8:1:128169293:1	96609171	96624614	R	KRAB-A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:22228]
ENSCJAG00000013411	NOVEL	protein_coding	ENSCJAG00000013411	chromosome:C_jacchus3.2.1:11:1:130397257:1	16151703	16172996	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043551}  [Source:UniProtKB/TrEMBL;Acc:F7IRP0]
ENSCJAG00000010276	KNOWN_BY_PROJECTION	protein_coding	ZNF746	chromosome:C_jacchus3.2.1:8:1:128169293:1	96797896	96818410	D	zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
ENSCJAG00000032232	KNOWN	protein_coding	ZNF777	chromosome:C_jacchus3.2.1:8:1:128169293:1	96831682	96860839	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018984}; Zinc finger protein 777 {ECO:0000313|EMBL:JAB04962.1}  [Source:UniProtKB/TrEMBL;Acc:F7GQ20]
ENSCJAG00000031758	KNOWN_BY_PROJECTION	protein_coding	ZNF783	chromosome:C_jacchus3.2.1:8:1:128169293:1	96980347	96997441	R	zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
ENSCJAG00000010260	KNOWN_BY_PROJECTION	protein_coding	ZNF212	chromosome:C_jacchus3.2.1:8:1:128169293:1	97005394	97024732	R	zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
ENSCJAG00000036951	KNOWN_BY_PROJECTION	protein_coding	ALG11	chromosome:C_jacchus3.2.1:1:1:210400635:1	62862452	62907487	D	ALG11, alpha-1,2-mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:32456]
ENSCJAG00000008414	KNOWN_BY_PROJECTION	protein_coding	UTP14C	chromosome:C_jacchus3.2.1:1:1:210400635:1	62902767	62909346	D	UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast) [Source:HGNC Symbol;Acc:HGNC:20321]
ENSCJAG00000010222	KNOWN_BY_PROJECTION	protein_coding	ZNF282	chromosome:C_jacchus3.2.1:8:1:128169293:1	97038542	97069440	R	zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
ENSCJAG00000008438	KNOWN	protein_coding	WDFY2	chromosome:C_jacchus3.2.1:1:1:210400635:1	62904227	63278773	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051532}; WD repeat and FYVE domain-containing protein 2 {ECO:0000313|EMBL:JAB03683.1}  [Source:UniProtKB/TrEMBL;Acc:F6W2Z2]
ENSCJAG00000010213	KNOWN_BY_PROJECTION	protein_coding	ZNF398	chromosome:C_jacchus3.2.1:8:1:128169293:1	97080364	97116717	R	zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
ENSCJAG00000035501	KNOWN_BY_PROJECTION	protein_coding	ZNF425	chromosome:C_jacchus3.2.1:8:1:128169293:1	97138912	97158675	D	zinc finger protein 425 [Source:HGNC Symbol;Acc:HGNC:20690]
ENSCJAG00000010198	KNOWN_BY_PROJECTION	protein_coding	ZNF786	chromosome:C_jacchus3.2.1:8:1:128169293:1	97164360	97185128	D	zinc finger protein 786 [Source:HGNC Symbol;Acc:HGNC:21806]
ENSCJAG00000013436	KNOWN_BY_PROJECTION	protein_coding	ARCN1	chromosome:C_jacchus3.2.1:11:1:130397257:1	16180260	16218891	D	archain 1 [Source:HGNC Symbol;Acc:HGNC:649]
ENSCJAG00000010187	KNOWN_BY_PROJECTION	protein_coding	PDIA4	chromosome:C_jacchus3.2.1:8:1:128169293:1	97219048	97243609	D	protein disulfide isomerase family A, member 4 [Source:HGNC Symbol;Acc:HGNC:30167]
ENSCJAG00000008430	NOVEL	pseudogene	ENSCJAG00000008430	chromosome:C_jacchus3.2.1:1:1:210400635:1	62950677	62952509	D	<no descrition>
ENSCJAG00000008432	KNOWN_BY_PROJECTION	protein_coding	CCDC70	chromosome:C_jacchus3.2.1:1:1:210400635:1	62992927	62997503	R	coiled-coil domain containing 70 [Source:HGNC Symbol;Acc:HGNC:25303]
ENSCJAG00000033264	KNOWN_BY_PROJECTION	protein_coding	DHRS12	chromosome:C_jacchus3.2.1:1:1:210400635:1	63052221	63087771	D	dehydrogenase/reductase (SDR family) member 12 [Source:HGNC Symbol;Acc:HGNC:25832]
ENSCJAG00000010084	KNOWN_BY_PROJECTION	protein_coding	EZH2	chromosome:C_jacchus3.2.1:8:1:128169293:1	97368230	97448409	D	enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]
ENSCJAG00000013463	KNOWN	protein_coding	PHLDB1	chromosome:C_jacchus3.2.1:11:1:130397257:1	16222604	16276599	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024956}  [Source:UniProtKB/TrEMBL;Acc:F6R361]
ENSCJAG00000010002	KNOWN_BY_PROJECTION	protein_coding	CUL1	chromosome:C_jacchus3.2.1:8:1:128169293:1	97453885	97526604	R	cullin 1 [Source:HGNC Symbol;Acc:HGNC:2551]
ENSCJAG00000008452	NOVEL	pseudogene	ENSCJAG00000008452	chromosome:C_jacchus3.2.1:1:1:210400635:1	63228980	63229392	D	<no descrition>
ENSCJAG00000009992	KNOWN_BY_PROJECTION	protein_coding	C7orf33	chromosome:C_jacchus3.2.1:8:1:128169293:1	97648678	97690121	R	chromosome 7 open reading frame 33 [Source:HGNC Symbol;Acc:HGNC:21724]
ENSCJAG00000009990	NOVEL	pseudogene	ENSCJAG00000009990	chromosome:C_jacchus3.2.1:8:1:128169293:1	97845351	97845671	R	<no descrition>
ENSCJAG00000009965	KNOWN	protein_coding	CNTNAP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	97864156	98456775	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018323}  [Source:UniProtKB/TrEMBL;Acc:F7ER04]
ENSCJAG00000009979	KNOWN_BY_PROJECTION	protein_coding	C6orf89	chromosome:C_jacchus3.2.1:8:1:128169293:1	97912815	97934783	D	chromosome 6 open reading frame 89 [Source:HGNC Symbol;Acc:HGNC:21114]
ENSCJAG00000032840	KNOWN_BY_PROJECTION	protein_coding	CNTNAP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	99232851	99243140	R	contactin associated protein-like 2 [Source:HGNC Symbol;Acc:HGNC:13830]
ENSCJAG00000009964	NOVEL	pseudogene	ENSCJAG00000009964	chromosome:C_jacchus3.2.1:8:1:128169293:1	101019296	101020396	D	<no descrition>
ENSCJAG00000035359	NOVEL	protein_coding	ENSCJAG00000035359	chromosome:C_jacchus3.2.1:8:1:128169293:1	101333712	101335096	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052461}  [Source:UniProtKB/TrEMBL;Acc:F7I2E3]
ENSCJAG00000009941	KNOWN_BY_PROJECTION	protein_coding	TPK1	chromosome:C_jacchus3.2.1:8:1:128169293:1	101524126	101928477	D	thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:HGNC:17358]
ENSCJAG00000008453	KNOWN_BY_PROJECTION	protein_coding	INTS6	chromosome:C_jacchus3.2.1:1:1:210400635:1	63381316	63472884	D	integrator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14879]
ENSCJAG00000009956	NOVEL	protein_coding	ENSCJAG00000009956	chromosome:C_jacchus3.2.1:8:1:128169293:1	101711600	101712968	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018293}  [Source:UniProtKB/TrEMBL;Acc:F7FIL7]
ENSCJAG00000009888	NOVEL	protein_coding	ENSCJAG00000009888	chromosome:C_jacchus3.2.1:8:1:128169293:1	101818916	102106642	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7E0K0]
ENSCJAG00000009917	KNOWN_BY_PROJECTION	protein_coding	NOBOX	chromosome:C_jacchus3.2.1:8:1:128169293:1	101964420	101979841	D	NOBOX oogenesis homeobox [Source:HGNC Symbol;Acc:HGNC:22448]
ENSCJAG00000008536	KNOWN_BY_PROJECTION	protein_coding	SERPINE3	chromosome:C_jacchus3.2.1:1:1:210400635:1	63474073	63497477	R	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3 [Source:HGNC Symbol;Acc:HGNC:24774]
ENSCJAG00000008541	KNOWN_BY_PROJECTION	protein_coding	FAM124A	chromosome:C_jacchus3.2.1:1:1:210400635:1	63565303	63623485	R	family with sequence similarity 124A [Source:HGNC Symbol;Acc:HGNC:26413]
ENSCJAG00000008554	NOVEL	protein_coding	ENSCJAG00000008554	chromosome:C_jacchus3.2.1:1:1:210400635:1	63783073	63842492	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015808}  [Source:UniProtKB/TrEMBL;Acc:F7GZ08]
ENSCJAG00000009894	KNOWN_BY_PROJECTION	protein_coding	ARHGEF5	chromosome:C_jacchus3.2.1:8:1:128169293:1	101996258	102022772	R	Rho guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:13209]
ENSCJAG00000013576	KNOWN_BY_PROJECTION	protein_coding	TREH	chromosome:C_jacchus3.2.1:11:1:130397257:1	16276815	16298648	R	trehalase (brush-border membrane glycoprotein) [Source:HGNC Symbol;Acc:HGNC:12266]
ENSCJAG00000009883	KNOWN_BY_PROJECTION	protein_coding	OR2A2	chromosome:C_jacchus3.2.1:8:1:128169293:1	102121319	102134748	D	olfactory receptor, family 2, subfamily A, member 2 [Source:HGNC Symbol;Acc:HGNC:8230]
ENSCJAG00000033890	NOVEL	protein_coding	ENSCJAG00000033890	chromosome:C_jacchus3.2.1:8:1:128169293:1	102210734	102212557	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F6T4R8]
ENSCJAG00000009872	NOVEL	protein_coding	ENSCJAG00000009872	chromosome:C_jacchus3.2.1:8:1:128169293:1	102247708	102290254	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7ESR9]
ENSCJAG00000009877	NOVEL	protein_coding	ENSCJAG00000009877	chromosome:C_jacchus3.2.1:8:1:128169293:1	102267645	102270595	R	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7ES84]
ENSCJAG00000009841	KNOWN	protein_coding	FAM115A	chromosome:C_jacchus3.2.1:8:1:128169293:1	102326310	102375210	D	Protein FAM115A isoform 1 {ECO:0000313|EMBL:JAB09338.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018084}  [Source:UniProtKB/TrEMBL;Acc:F7FXG5]
ENSCJAG00000008585	KNOWN	protein_coding	RNASEH2B	chromosome:C_jacchus3.2.1:1:1:210400635:1	63875652	63939398	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015850}  [Source:UniProtKB/TrEMBL;Acc:F7GNP1]
ENSCJAG00000009823	KNOWN_BY_PROJECTION	protein_coding	TCAF2	chromosome:C_jacchus3.2.1:8:1:128169293:1	102398909	102511035	D	TRPM8 channel-associated factor 2 [Source:HGNC Symbol;Acc:HGNC:26878]
ENSCJAG00000009817	KNOWN_BY_PROJECTION	protein_coding	HAND1	chromosome:C_jacchus3.2.1:8:1:128169293:1	102578915	102582160	D	heart and neural crest derivatives expressed 1 [Source:HGNC Symbol;Acc:HGNC:4807]
ENSCJAG00000009814	NOVEL	protein_coding	ENSCJAG00000009814	chromosome:C_jacchus3.2.1:8:1:128169293:1	102626192	102627518	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I500]
ENSCJAG00000021987	NOVEL	protein_coding	ENSCJAG00000021987	chromosome:C_jacchus3.2.1:8:1:128169293:1	102663031	102664140	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7I724]
ENSCJAG00000013591	KNOWN	protein_coding	DDX6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16342309	16398120	R	Putative ATP-dependent RNA helicase DDX6 {ECO:0000313|EMBL:JAB09499.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025031}  [Source:UniProtKB/TrEMBL;Acc:F7A1Y0]
ENSCJAG00000009766	KNOWN_BY_PROJECTION	protein_coding	EPHA1	chromosome:C_jacchus3.2.1:8:1:128169293:1	102773362	102791700	D	EPH receptor A1 [Source:HGNC Symbol;Acc:HGNC:3385]
ENSCJAG00000008616	KNOWN_BY_PROJECTION	protein_coding	DLEU7	chromosome:C_jacchus3.2.1:1:1:210400635:1	64007683	64135599	D	deleted in lymphocytic leukemia, 7 [Source:HGNC Symbol;Acc:HGNC:17567]
ENSCJAG00000008619	KNOWN_BY_PROJECTION	protein_coding	DLEU1	chromosome:C_jacchus3.2.1:1:1:210400635:1	64777090	64798655	R	deleted in lymphocytic leukemia 1 (non-protein coding) [Source:HGNC Symbol;Acc:HGNC:13747]
ENSCJAG00000031586	NOVEL	protein_coding	ENSCJAG00000031586	chromosome:C_jacchus3.2.1:1:1:210400635:1	64798833	64836266	D	<no descrition>
ENSCJAG00000037365	NOVEL	protein_coding	ENSCJAG00000037365	chromosome:C_jacchus3.2.1:1:1:210400635:1	64831564	64835532	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043368}  [Source:UniProtKB/TrEMBL;Acc:F7IPF0]
ENSCJAG00000013617	NOVEL	protein_coding	ENSCJAG00000013617	chromosome:C_jacchus3.2.1:11:1:130397257:1	16482690	16484099	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025037}  [Source:UniProtKB/TrEMBL;Acc:F7A1V7]
ENSCJAG00000013620	KNOWN_BY_PROJECTION	protein_coding	CXCR5	chromosome:C_jacchus3.2.1:11:1:130397257:1	16506107	16517690	D	chemokine (C-X-C motif) receptor 5 [Source:HGNC Symbol;Acc:HGNC:1060]
ENSCJAG00000013622	KNOWN_BY_PROJECTION	protein_coding	BCL9L	chromosome:C_jacchus3.2.1:11:1:130397257:1	16519267	16536930	R	B-cell CLL/lymphoma 9-like [Source:HGNC Symbol;Acc:HGNC:23688]
ENSCJAG00000008633	KNOWN_BY_PROJECTION	protein_coding	TRIM13	chromosome:C_jacchus3.2.1:1:1:210400635:1	64866845	64885369	R	tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
ENSCJAG00000009741	KNOWN_BY_PROJECTION	protein_coding	ZYX	chromosome:C_jacchus3.2.1:8:1:128169293:1	102792105	102801252	R	zyxin [Source:HGNC Symbol;Acc:HGNC:13200]
ENSCJAG00000009713	KNOWN	protein_coding	FAM131B	chromosome:C_jacchus3.2.1:8:1:128169293:1	102828179	102838000	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017823}  [Source:UniProtKB/TrEMBL;Acc:F7HRF3]
ENSCJAG00000008641	NOVEL	protein_coding	ENSCJAG00000008641	chromosome:C_jacchus3.2.1:1:1:210400635:1	65021390	65136815	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016033}  [Source:UniProtKB/TrEMBL;Acc:F6XIV0]
ENSCJAG00000009651	KNOWN_BY_PROJECTION	protein_coding	CLCN1	chromosome:C_jacchus3.2.1:8:1:128169293:1	102839315	102874883	R	chloride channel, voltage-sensitive 1 [Source:HGNC Symbol;Acc:HGNC:2019]
ENSCJAG00000033238	NOVEL	pseudogene	ENSCJAG00000033238	chromosome:C_jacchus3.2.1:11:1:130397257:1	16576974	16577463	R	<no descrition>
ENSCJAG00000013652	KNOWN_BY_PROJECTION	protein_coding	UPK2	chromosome:C_jacchus3.2.1:11:1:130397257:1	16589616	16590612	D	uroplakin 2 [Source:HGNC Symbol;Acc:HGNC:12579]
ENSCJAG00000009586	KNOWN	protein_coding	CASP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	102884066	102901765	R	Caspase {ECO:0000256|PIRNR:PIRNR038001}  [Source:UniProtKB/TrEMBL;Acc:F7I2T9]
ENSCJAG00000013656	KNOWN_BY_PROJECTION	protein_coding	FOXR1	chromosome:C_jacchus3.2.1:11:1:130397257:1	16613000	16625285	D	forkhead box R1 [Source:HGNC Symbol;Acc:HGNC:29980]
ENSCJAG00000013671	KNOWN_BY_PROJECTION	protein_coding	CCDC84	chromosome:C_jacchus3.2.1:11:1:130397257:1	16638275	16656410	D	coiled-coil domain containing 84 [Source:HGNC Symbol;Acc:HGNC:30460]
ENSCJAG00000013691	KNOWN	protein_coding	RPS25	chromosome:C_jacchus3.2.1:11:1:130397257:1	16656526	16659961	R	Callithrix jacchus ribosomal protein S25 (RPS25), mRNA. [Source:RefSeq mRNA;Acc:NM_001253774]
ENSCJAG00000013703	KNOWN	protein_coding	TRAPPC4	chromosome:C_jacchus3.2.1:11:1:130397257:1	16660151	16664973	D	Trafficking protein particle complex subunit 4 {ECO:0000313|EMBL:JAB01721.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044313}  [Source:UniProtKB/TrEMBL;Acc:F7GR89]
ENSCJAG00000009577	KNOWN	protein_coding	TMEM139	chromosome:C_jacchus3.2.1:8:1:128169293:1	102903203	102910949	R	Transmembrane protein 139 isoform a {ECO:0000313|EMBL:JAB06440.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017546}  [Source:UniProtKB/TrEMBL;Acc:F7IH16]
ENSCJAG00000009548	KNOWN_BY_PROJECTION	protein_coding	GSTK1	chromosome:C_jacchus3.2.1:8:1:128169293:1	102920692	102926547	R	glutathione S-transferase kappa 1 [Source:HGNC Symbol;Acc:HGNC:16906]
ENSCJAG00000009535	KNOWN_BY_PROJECTION	protein_coding	PIP	chromosome:C_jacchus3.2.1:8:1:128169293:1	103033682	103041620	R	prolactin-induced protein [Source:HGNC Symbol;Acc:HGNC:8993]
ENSCJAG00000038055	NOVEL	pseudogene	ENSCJAG00000038055	chromosome:C_jacchus3.2.1:8:1:128169293:1	103154887	103155831	D	<no descrition>
ENSCJAG00000009529	NOVEL	pseudogene	ENSCJAG00000009529	chromosome:C_jacchus3.2.1:8:1:128169293:1	103161899	103162528	R	<no descrition>
ENSCJAG00000009471	KNOWN_BY_PROJECTION	protein_coding	KEL	chromosome:C_jacchus3.2.1:8:1:128169293:1	103210889	103235159	D	Kell blood group, metallo-endopeptidase [Source:HGNC Symbol;Acc:HGNC:6308]
ENSCJAG00000009465	KNOWN_BY_PROJECTION	protein_coding	C7orf34	chromosome:C_jacchus3.2.1:8:1:128169293:1	103226671	103236839	R	chromosome 7 open reading frame 34 [Source:HGNC Symbol;Acc:HGNC:21750]
ENSCJAG00000013716	KNOWN	protein_coding	SLC37A4	chromosome:C_jacchus3.2.1:11:1:130397257:1	16665798	16672412	R	Glucose-6-phosphate translocase isoform 1 {ECO:0000313|EMBL:JAB10735.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025289}  [Source:UniProtKB/TrEMBL;Acc:F6VHY7]
ENSCJAG00000009427	KNOWN_BY_PROJECTION	protein_coding	TRPV6	chromosome:C_jacchus3.2.1:8:1:128169293:1	103242045	103307745	D	transient receptor potential cation channel, subfamily V, member 6 [Source:HGNC Symbol;Acc:HGNC:14006]
ENSCJAG00000022146	NOVEL	pseudogene	ENSCJAG00000022146	chromosome:C_jacchus3.2.1:1:1:210400635:1	65071692	65071996	D	<no descrition>
ENSCJAG00000008764	KNOWN	protein_coding	EBPL	chromosome:C_jacchus3.2.1:1:1:210400635:1	65172036	65180718	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016095}  [Source:UniProtKB/TrEMBL;Acc:F6V6K1]
ENSCJAG00000008772	KNOWN	protein_coding	RCBTB1	chromosome:C_jacchus3.2.1:1:1:210400635:1	65266060	65302594	D	RCC1 and BTB domain-containing protein 1 {ECO:0000313|EMBL:JAB09712.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016191}  [Source:UniProtKB/TrEMBL;Acc:F6ZPR4]
ENSCJAG00000008839	KNOWN_BY_PROJECTION	protein_coding	PHF11	chromosome:C_jacchus3.2.1:1:1:210400635:1	65305580	65337749	R	PHD finger protein 11 [Source:HGNC Symbol;Acc:HGNC:17024]
ENSCJAG00000008864	KNOWN	protein_coding	SETDB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	65338395	65387077	R	Histone-lysine N-methyltransferase SETDB2 isoform b {ECO:0000313|EMBL:JAB05825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016282}  [Source:UniProtKB/TrEMBL;Acc:F6VPZ5]
ENSCJAG00000018986	KNOWN_BY_PROJECTION	protein_coding	EPHB6	chromosome:C_jacchus3.2.1:8:1:128169293:1	103307858	103316431	R	EPH receptor B6 [Source:HGNC Symbol;Acc:HGNC:3396]
ENSCJAG00000019009	KNOWN_BY_PROJECTION	protein_coding	TRBV30	chromosome:C_jacchus3.2.1:8:1:128169293:1	103361115	103361547	D	T cell receptor beta variable 30 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12214]
ENSCJAG00000013865	NOVEL	protein_coding	ENSCJAG00000013865	chromosome:C_jacchus3.2.1:8:1:128169293:1	103377595	103747817	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025522}  [Source:UniProtKB/TrEMBL;Acc:F6ZEX6]
ENSCJAG00000013761	KNOWN	protein_coding	HYOU1	chromosome:C_jacchus3.2.1:11:1:130397257:1	16684069	16696995	R	Hypoxia up-regulated protein 1 {ECO:0000313|EMBL:JAB07424.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051860}  [Source:UniProtKB/TrEMBL;Acc:F6VYY3]
ENSCJAG00000013860	NOVEL	protein_coding	ENSCJAG00000013860	chromosome:C_jacchus3.2.1:8:1:128169293:1	103506112	103625514	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025470}  [Source:UniProtKB/TrEMBL;Acc:F7CDB0]
ENSCJAG00000013855	NOVEL	protein_coding	ENSCJAG00000013855	chromosome:C_jacchus3.2.1:8:1:128169293:1	103660386	103660832	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025460}  [Source:UniProtKB/TrEMBL;Acc:F7CE71]
ENSCJAG00000036987	NOVEL	protein_coding	ENSCJAG00000036987	chromosome:C_jacchus3.2.1:8:1:128169293:1	103668855	103700257	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052176}  [Source:UniProtKB/TrEMBL;Acc:F7HY01]
ENSCJAG00000013853	NOVEL	protein_coding	ENSCJAG00000013853	chromosome:C_jacchus3.2.1:8:1:128169293:1	103693797	103694256	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025457}  [Source:UniProtKB/TrEMBL;Acc:F6UV58]
ENSCJAG00000013840	NOVEL	protein_coding	ENSCJAG00000013840	chromosome:C_jacchus3.2.1:8:1:128169293:1	103733642	103734071	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025440}  [Source:UniProtKB/TrEMBL;Acc:F6VGD8]
ENSCJAG00000035178	NOVEL	protein_coding	ENSCJAG00000035178	chromosome:C_jacchus3.2.1:8:1:128169293:1	103742918	103743045	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050186}  [Source:UniProtKB/TrEMBL;Acc:F7H443]
ENSCJAG00000013837	KNOWN_BY_PROJECTION	protein_coding	TRBV5-1	chromosome:C_jacchus3.2.1:8:1:128169293:1	103770177	103770706	R	T cell receptor beta variable 5-1 [Source:HGNC Symbol;Acc:HGNC:12218]
ENSCJAG00000034432	NOVEL	protein_coding	ENSCJAG00000034432	chromosome:C_jacchus3.2.1:8:1:128169293:1	103779585	103780148	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025445}  [Source:UniProtKB/TrEMBL;Acc:F6VGA2]
ENSCJAG00000013834	KNOWN_BY_PROJECTION	protein_coding	TRBV3-1	chromosome:C_jacchus3.2.1:8:1:128169293:1	103783635	103784166	R	T cell receptor beta variable 3-1 [Source:HGNC Symbol;Acc:HGNC:12212]
ENSCJAG00000013833	KNOWN_BY_PROJECTION	protein_coding	TRBV2	chromosome:C_jacchus3.2.1:8:1:128169293:1	103797772	103798256	R	T cell receptor beta variable 2 [Source:HGNC Symbol;Acc:HGNC:12195]
ENSCJAG00000013826	NOVEL	protein_coding	ENSCJAG00000013826	chromosome:C_jacchus3.2.1:8:1:128169293:1	103807610	103813608	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025430}  [Source:UniProtKB/TrEMBL;Acc:F6W0J7]
ENSCJAG00000013823	NOVEL	protein_coding	ENSCJAG00000013823	chromosome:C_jacchus3.2.1:8:1:128169293:1	103826700	103830078	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025410}  [Source:UniProtKB/TrEMBL;Acc:F6WKJ9]
ENSCJAG00000013813	KNOWN_BY_PROJECTION	protein_coding	PRSS58	chromosome:C_jacchus3.2.1:8:1:128169293:1	103843314	103849250	D	protease, serine, 58 [Source:HGNC Symbol;Acc:HGNC:39125]
ENSCJAG00000013799	NOVEL	protein_coding	ENSCJAG00000013799	chromosome:C_jacchus3.2.1:8:1:128169293:1	103864921	103871461	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025398}  [Source:UniProtKB/TrEMBL;Acc:F6YYJ1]
ENSCJAG00000008904	KNOWN_BY_PROJECTION	protein_coding	CAB39L	chromosome:C_jacchus3.2.1:1:1:210400635:1	65411957	65490540	R	calcium binding protein 39-like [Source:HGNC Symbol;Acc:HGNC:20290]
ENSCJAG00000036807	NOVEL	protein_coding	ENSCJAG00000036807	chromosome:C_jacchus3.2.1:8:1:128169293:1	103891063	104008989	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025374}  [Source:UniProtKB/TrEMBL;Acc:F6ZH08]
ENSCJAG00000008924	NOVEL	protein_coding	ENSCJAG00000008924	chromosome:C_jacchus3.2.1:1:1:210400635:1	65539397	65540281	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016314}  [Source:UniProtKB/TrEMBL;Acc:F7C655]
ENSCJAG00000008925	KNOWN_BY_PROJECTION	protein_coding	CDADC1	chromosome:C_jacchus3.2.1:1:1:210400635:1	65562535	65604815	R	cytidine and dCMP deaminase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20299]
ENSCJAG00000008970	KNOWN_BY_PROJECTION	protein_coding	MLNR	chromosome:C_jacchus3.2.1:1:1:210400635:1	65621381	65623560	R	motilin receptor [Source:HGNC Symbol;Acc:HGNC:4495]
ENSCJAG00000013692	KNOWN_BY_PROJECTION	protein_coding	MGAM	chromosome:C_jacchus3.2.1:8:1:128169293:1	104016494	104138991	R	maltase-glucoamylase (alpha-glucosidase) [Source:HGNC Symbol;Acc:HGNC:7043]
ENSCJAG00000013677	KNOWN_BY_PROJECTION	protein_coding	CLEC5A	chromosome:C_jacchus3.2.1:8:1:128169293:1	104192954	104215209	D	C-type lectin domain family 5, member A [Source:HGNC Symbol;Acc:HGNC:2054]
ENSCJAG00000008978	KNOWN	protein_coding	FNDC3A	chromosome:C_jacchus3.2.1:1:1:210400635:1	65631950	65813154	R	Fibronectin type-III domain-containing protein 3A isoform 1 {ECO:0000313|EMBL:JAB09340.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016461}  [Source:UniProtKB/TrEMBL;Acc:F6W8V7]
ENSCJAG00000013672	NOVEL	pseudogene	ENSCJAG00000013672	chromosome:C_jacchus3.2.1:8:1:128169293:1	104228338	104230206	R	<no descrition>
ENSCJAG00000013663	KNOWN_BY_PROJECTION	protein_coding	PRSS37	chromosome:C_jacchus3.2.1:8:1:128169293:1	104263933	104269462	D	protease, serine, 37 [Source:HGNC Symbol;Acc:HGNC:29211]
ENSCJAG00000013589	KNOWN	protein_coding	AGK	chromosome:C_jacchus3.2.1:8:1:128169293:1	104292876	104512348	R	Acylglycerol kinase, mitochondrial {ECO:0000313|EMBL:JAB11459.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050081}  [Source:UniProtKB/TrEMBL;Acc:F7F0E4]
ENSCJAG00000013650	KNOWN	protein_coding	SSBP1	chromosome:C_jacchus3.2.1:8:1:128169293:1	104317909	104330197	R	Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}  [Source:UniProtKB/TrEMBL;Acc:F6YE54]
ENSCJAG00000013850	KNOWN	protein_coding	VPS11	chromosome:C_jacchus3.2.1:11:1:130397257:1	16710543	16723540	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025532}; Vacuolar protein sorting-associated protein 11 homolog {ECO:0000313|EMBL:JAB06212.1}  [Source:UniProtKB/TrEMBL;Acc:F6YXQ9]
ENSCJAG00000013627	KNOWN_BY_PROJECTION	protein_coding	WEE2	chromosome:C_jacchus3.2.1:8:1:128169293:1	104340447	104362426	R	WEE1 homolog 2 (S. pombe) [Source:HGNC Symbol;Acc:HGNC:19684]
ENSCJAG00000013621	KNOWN_BY_PROJECTION	protein_coding	KIAA1147	chromosome:C_jacchus3.2.1:8:1:128169293:1	104372109	104409908	D	KIAA1147 [Source:HGNC Symbol;Acc:HGNC:29472]
ENSCJAG00000013588	KNOWN_BY_PROJECTION	protein_coding	TMEM178B	chromosome:C_jacchus3.2.1:8:1:128169293:1	104598940	104636400	R	transmembrane protein 178B [Source:HGNC Symbol;Acc:HGNC:44112]
ENSCJAG00000013582	KNOWN	protein_coding	ENSCJAG00000013582	chromosome:C_jacchus3.2.1:8:1:128169293:1	105077956	105086888	D	28S ribosomal protein S33, mitochondrial {ECO:0000313|EMBL:JAB07855.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024976}  [Source:UniProtKB/TrEMBL;Acc:F6QIR8]
ENSCJAG00000013536	KNOWN	protein_coding	BRAF	chromosome:C_jacchus3.2.1:8:1:128169293:1	105176489	105374536	D	Serine/threonine-protein kinase B-raf {ECO:0000313|EMBL:JAB02416.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024968}  [Source:UniProtKB/TrEMBL;Acc:F6QUC3]
ENSCJAG00000013900	KNOWN	protein_coding	HMBS	chromosome:C_jacchus3.2.1:11:1:130397257:1	16726387	16735000	D	Porphobilinogen deaminase isoform 1 {ECO:0000313|EMBL:JAB05709.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025559}  [Source:UniProtKB/TrEMBL;Acc:F6XT45]
ENSCJAG00000013524	KNOWN	protein_coding	NDUFB2	chromosome:C_jacchus3.2.1:8:1:128169293:1	105396357	105405710	R	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial {ECO:0000313|EMBL:JAB48095.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024878}  [Source:UniProtKB/TrEMBL;Acc:F6T998]
ENSCJAG00000013509	KNOWN_BY_PROJECTION	protein_coding	ADCK2	chromosome:C_jacchus3.2.1:8:1:128169293:1	105408449	105431815	R	aarF domain containing kinase 2 [Source:HGNC Symbol;Acc:HGNC:19039]
ENSCJAG00000009006	KNOWN	protein_coding	RCBTB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	66237177	66281719	D	RCC1 and BTB domain-containing protein 2 {ECO:0000313|EMBL:JAB10951.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016607}  [Source:UniProtKB/TrEMBL;Acc:F6YLW4]
ENSCJAG00000013487	KNOWN	protein_coding	DENND2A	chromosome:C_jacchus3.2.1:8:1:128169293:1	105478649	105689248	D	DENN domain-containing protein 2A {ECO:0000313|EMBL:JAB02475.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024830}  [Source:UniProtKB/TrEMBL;Acc:F6U758]
ENSCJAG00000013474	KNOWN	protein_coding	MKRN1	chromosome:C_jacchus3.2.1:8:1:128169293:1	105647568	105654223	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024775}  [Source:UniProtKB/TrEMBL;Acc:F6QW58]
ENSCJAG00000023011	NOVEL	pseudogene	ENSCJAG00000023011	chromosome:C_jacchus3.2.1:11:1:130397257:1	16735526	16737085	R	<no descrition>
ENSCJAG00000013457	KNOWN_BY_PROJECTION	protein_coding	RAB19	chromosome:C_jacchus3.2.1:8:1:128169293:1	105685405	105701310	R	RAB19, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:19982]
ENSCJAG00000013916	KNOWN	protein_coding	DPAGT1	chromosome:C_jacchus3.2.1:11:1:130397257:1	16738758	16750635	R	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase {ECO:0000313|EMBL:JAB10682.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025590}  [Source:UniProtKB/TrEMBL;Acc:F6VZ52]
ENSCJAG00000013932	KNOWN_BY_PROJECTION	protein_coding	C2CD2L	chromosome:C_jacchus3.2.1:11:1:130397257:1	16749685	16759085	D	C2CD2-like [Source:HGNC Symbol;Acc:HGNC:29000]
ENSCJAG00000013424	KNOWN	protein_coding	SLC37A3	chromosome:C_jacchus3.2.1:8:1:128169293:1	105708930	105767569	D	Sugar phosphate exchanger 3 isoform 1 {ECO:0000313|EMBL:JAB09809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024703}  [Source:UniProtKB/TrEMBL;Acc:F6S3G3]
ENSCJAG00000014034	KNOWN_BY_PROJECTION	protein_coding	MCAM	chromosome:C_jacchus3.2.1:11:1:130397257:1	16762978	16964027	R	melanoma cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:6934]
ENSCJAG00000013403	KNOWN_BY_PROJECTION	protein_coding	KDM7A	chromosome:C_jacchus3.2.1:8:1:128169293:1	105937552	106037458	D	lysine (K)-specific demethylase 7A [Source:HGNC Symbol;Acc:HGNC:22224]
ENSCJAG00000009076	KNOWN_BY_PROJECTION	protein_coding	RB1	chromosome:C_jacchus3.2.1:1:1:210400635:1	66288419	66459787	R	retinoblastoma 1 [Source:HGNC Symbol;Acc:HGNC:9884]
ENSCJAG00000013351	KNOWN	protein_coding	PARP12	chromosome:C_jacchus3.2.1:8:1:128169293:1	106082109	106123667	D	Poly [ADP-ribose] polymerase 12 {ECO:0000313|EMBL:JAB04924.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024598}  [Source:UniProtKB/TrEMBL;Acc:F7F9E2]
ENSCJAG00000013325	KNOWN	protein_coding	TBXAS1	chromosome:C_jacchus3.2.1:8:1:128169293:1	106126750	106366992	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024506}  [Source:UniProtKB/TrEMBL;Acc:F7H2V9]
ENSCJAG00000013942	KNOWN	protein_coding	HINFP	chromosome:C_jacchus3.2.1:11:1:130397257:1	16763804	16776995	D	Histone H4 transcription factor isoform 1 {ECO:0000313|EMBL:JAB04179.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025661}  [Source:UniProtKB/TrEMBL;Acc:F7AEP4]
ENSCJAG00000013263	KNOWN_BY_PROJECTION	protein_coding	HIPK2	chromosome:C_jacchus3.2.1:8:1:128169293:1	106431874	106583967	D	homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]
ENSCJAG00000013258	KNOWN_BY_PROJECTION	protein_coding	CLEC2L	chromosome:C_jacchus3.2.1:8:1:128169293:1	106603426	106607425	R	C-type lectin domain family 2, member L [Source:HGNC Symbol;Acc:HGNC:21969]
ENSCJAG00000013965	KNOWN	protein_coding	ABCG4	chromosome:C_jacchus3.2.1:11:1:130397257:1	16786235	16801939	D	ATP-binding cassette sub-family G member 4 {ECO:0000313|EMBL:JAB20058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025731}  [Source:UniProtKB/TrEMBL;Acc:F6WHS0]
ENSCJAG00000032351	KNOWN_BY_PROJECTION	protein_coding	KLRG2	chromosome:C_jacchus3.2.1:8:1:128169293:1	106656038	106676711	D	killer cell lectin-like receptor subfamily G, member 2 [Source:HGNC Symbol;Acc:HGNC:24778]
ENSCJAG00000013198	KNOWN	protein_coding	LUC7L2	chromosome:C_jacchus3.2.1:8:1:128169293:1	106701013	106779945	R	Putative RNA-binding protein Luc7-like 2 isoform 1 {ECO:0000313|EMBL:JAB06977.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024296}  [Source:UniProtKB/TrEMBL;Acc:F7EI42]
ENSCJAG00000014001	KNOWN_BY_PROJECTION	protein_coding	NLRX1	chromosome:C_jacchus3.2.1:11:1:130397257:1	16810259	16830587	D	NLR family member X1 [Source:HGNC Symbol;Acc:HGNC:29890]
ENSCJAG00000022617	NOVEL	pseudogene	ENSCJAG00000022617	chromosome:C_jacchus3.2.1:1:1:210400635:1	66348685	66350023	D	<no descrition>
ENSCJAG00000009151	NOVEL	pseudogene	ENSCJAG00000009151	chromosome:C_jacchus3.2.1:1:1:210400635:1	66359758	66360548	D	<no descrition>
ENSCJAG00000014003	KNOWN_BY_PROJECTION	protein_coding	PDZD3	chromosome:C_jacchus3.2.1:11:1:130397257:1	16833974	16837421	D	PDZ domain containing 3 [Source:HGNC Symbol;Acc:HGNC:19891]
ENSCJAG00000013176	KNOWN_BY_PROJECTION	protein_coding	UBN2	chromosome:C_jacchus3.2.1:8:1:128169293:1	106796095	106900673	R	ubinuclein 2 [Source:HGNC Symbol;Acc:HGNC:21931]
ENSCJAG00000010424	NOVEL	protein_coding	ENSCJAG00000010424	chromosome:C_jacchus3.2.1:1:1:210400635:1	66443327	66447364	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048836}  [Source:UniProtKB/TrEMBL;Acc:F6T8T0]
ENSCJAG00000014014	KNOWN_BY_PROJECTION	protein_coding	CCDC153	chromosome:C_jacchus3.2.1:11:1:130397257:1	16838220	16846577	R	coiled-coil domain containing 153 [Source:HGNC Symbol;Acc:HGNC:27446]
ENSCJAG00000014015	KNOWN	protein_coding	CBL	chromosome:C_jacchus3.2.1:11:1:130397257:1	16861320	16951218	D	E3 ubiquitin-protein ligase CBL {ECO:0000313|EMBL:JAB46102.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025798}  [Source:UniProtKB/TrEMBL;Acc:F7CSA7]
ENSCJAG00000013133	KNOWN_BY_PROJECTION	protein_coding	TTC26	chromosome:C_jacchus3.2.1:8:1:128169293:1	106984349	107016469	R	tetratricopeptide repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:21882]
ENSCJAG00000009158	KNOWN	protein_coding	ITM2B	chromosome:C_jacchus3.2.1:1:1:210400635:1	66501009	66528488	R	Integral membrane protein 2B {ECO:0000313|EMBL:JAB10302.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016928}  [Source:UniProtKB/TrEMBL;Acc:F6UDB5]
ENSCJAG00000013080	KNOWN_BY_PROJECTION	protein_coding	ZC3HAV1	chromosome:C_jacchus3.2.1:8:1:128169293:1	107040608	107109817	D	zinc finger CCCH-type, antiviral 1 [Source:HGNC Symbol;Acc:HGNC:23721]
ENSCJAG00000014065	KNOWN	protein_coding	RNF26	chromosome:C_jacchus3.2.1:11:1:130397257:1	16991475	16994271	D	RING finger protein 26 {ECO:0000313|EMBL:JAB48204.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025852}  [Source:UniProtKB/TrEMBL;Acc:F7ACI4]
ENSCJAG00000013078	NOVEL	pseudogene	ENSCJAG00000013078	chromosome:C_jacchus3.2.1:8:1:128169293:1	107117708	107118180	R	<no descrition>
ENSCJAG00000013066	KNOWN_BY_PROJECTION	protein_coding	ZC3HAV1L	chromosome:C_jacchus3.2.1:8:1:128169293:1	107121213	107134378	D	zinc finger CCCH-type, antiviral 1-like [Source:HGNC Symbol;Acc:HGNC:22423]
ENSCJAG00000013063	NOVEL	pseudogene	ENSCJAG00000013063	chromosome:C_jacchus3.2.1:8:1:128169293:1	107155552	107155841	D	<no descrition>
ENSCJAG00000014068	KNOWN	protein_coding	C1QTNF5	chromosome:C_jacchus3.2.1:11:1:130397257:1	16995929	17003585	R	Complement C1q tumor necrosis factor-related protein 5 {ECO:0000313|EMBL:JAB09336.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025875}  [Source:UniProtKB/TrEMBL;Acc:F6ZD97]
ENSCJAG00000013046	KNOWN_BY_PROJECTION	protein_coding	KIAA1549	chromosome:C_jacchus3.2.1:8:1:128169293:1	107241155	107337794	D	KIAA1549 [Source:HGNC Symbol;Acc:HGNC:22219]
ENSCJAG00000014080	KNOWN_BY_PROJECTION	protein_coding	USP2	chromosome:C_jacchus3.2.1:11:1:130397257:1	17014088	17031910	R	ubiquitin specific peptidase 2 [Source:HGNC Symbol;Acc:HGNC:12618]
ENSCJAG00000013043	KNOWN_BY_PROJECTION	protein_coding	TMEM213	chromosome:C_jacchus3.2.1:8:1:128169293:1	107358598	107363862	R	transmembrane protein 213 [Source:HGNC Symbol;Acc:HGNC:27220]
ENSCJAG00000009256	KNOWN	protein_coding	MED4	chromosome:C_jacchus3.2.1:1:1:210400635:1	66664860	66684587	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016970}  [Source:UniProtKB/TrEMBL;Acc:F7C1R9]
ENSCJAG00000012974	KNOWN_BY_PROJECTION	protein_coding	ATP6V0A4	chromosome:C_jacchus3.2.1:8:1:128169293:1	107397182	107468158	D	ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
ENSCJAG00000014121	KNOWN	protein_coding	THY1	chromosome:C_jacchus3.2.1:11:1:130397257:1	17065849	17072408	R	Thy-1 membrane glycoprotein preproprotein {ECO:0000313|EMBL:JAB03935.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025943}  [Source:UniProtKB/TrEMBL;Acc:F6VWJ6]
ENSCJAG00000033612	NOVEL	pseudogene	ENSCJAG00000033612	chromosome:C_jacchus3.2.1:1:1:210400635:1	66700810	66702346	D	<no descrition>
ENSCJAG00000037451	NOVEL	protein_coding	ENSCJAG00000037451	chromosome:C_jacchus3.2.1:11:1:130397257:1	17065849	17071446	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049654}  [Source:UniProtKB/TrEMBL;Acc:F6ZDT0]
ENSCJAG00000012970	NOVEL	protein_coding	ENSCJAG00000012970	chromosome:C_jacchus3.2.1:8:1:128169293:1	107471290	107472342	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052366}  [Source:UniProtKB/TrEMBL;Acc:F7INR1]
ENSCJAG00000012969	NOVEL	pseudogene	ENSCJAG00000012969	chromosome:C_jacchus3.2.1:8:1:128169293:1	107479725	107480277	R	<no descrition>
ENSCJAG00000009274	KNOWN	protein_coding	NUDT15	chromosome:C_jacchus3.2.1:1:1:210400635:1	66766201	66777424	R	Putative 8-oxo-dGTP diphosphatase NUDT15 {ECO:0000313|EMBL:JAB02543.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016984}  [Source:UniProtKB/TrEMBL;Acc:F7BLM6]
ENSCJAG00000012965	KNOWN_BY_PROJECTION	protein_coding	SVOPL	chromosome:C_jacchus3.2.1:8:1:128169293:1	107491401	107571895	D	SVOP-like [Source:HGNC Symbol;Acc:HGNC:27034]
ENSCJAG00000014126	NOVEL	protein_coding	PRR1	chromosome:C_jacchus3.2.1:11:1:130397257:1	17304843	17405159	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025970}  [Source:UniProtKB/TrEMBL;Acc:F6UPM2]
ENSCJAG00000012885	KNOWN_BY_PROJECTION	protein_coding	TRIM24	chromosome:C_jacchus3.2.1:8:1:128169293:1	107580273	107704702	R	tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
ENSCJAG00000009278	KNOWN_BY_PROJECTION	protein_coding	SUCLA2	chromosome:C_jacchus3.2.1:1:1:210400635:1	66777015	66855496	D	succinate-CoA ligase, ADP-forming, beta subunit [Source:HGNC Symbol;Acc:HGNC:11448]
ENSCJAG00000014137	KNOWN_BY_PROJECTION	protein_coding	TRIM29	chromosome:C_jacchus3.2.1:11:1:130397257:1	17800848	17834765	R	tripartite motif containing 29 [Source:HGNC Symbol;Acc:HGNC:17274]
ENSCJAG00000012872	KNOWN_BY_PROJECTION	protein_coding	AKR1D1	chromosome:C_jacchus3.2.1:8:1:128169293:1	108032811	108074359	R	aldo-keto reductase family 1, member D1 [Source:HGNC Symbol;Acc:HGNC:388]
ENSCJAG00000014154	NOVEL	protein_coding	ENSCJAG00000014154	chromosome:C_jacchus3.2.1:11:1:130397257:1	17868358	17869288	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026021}  [Source:UniProtKB/TrEMBL;Acc:F7I065]
ENSCJAG00000014158	KNOWN_BY_PROJECTION	protein_coding	OAF	chromosome:C_jacchus3.2.1:11:1:130397257:1	17910174	17926887	D	OAF homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:28752]
ENSCJAG00000014166	KNOWN_BY_PROJECTION	protein_coding	POU2F3	chromosome:C_jacchus3.2.1:11:1:130397257:1	17938078	18024874	D	POU class 2 homeobox 3 [Source:HGNC Symbol;Acc:HGNC:19864]
ENSCJAG00000012834	KNOWN	protein_coding	CREB3L2	chromosome:C_jacchus3.2.1:8:1:128169293:1	108150115	108287526	D	Cyclic AMP-responsive element-binding protein 3-like protein 2 isoform 1 {ECO:0000313|EMBL:JAB10000.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023564}  [Source:UniProtKB/TrEMBL;Acc:F7I3W1]
ENSCJAG00000009341	NOVEL	pseudogene	ENSCJAG00000009341	chromosome:C_jacchus3.2.1:1:1:210400635:1	66843826	66844141	R	<no descrition>
ENSCJAG00000009344	NOVEL	pseudogene	ENSCJAG00000009344	chromosome:C_jacchus3.2.1:1:1:210400635:1	66884829	66885741	D	<no descrition>
ENSCJAG00000009349	KNOWN_BY_PROJECTION	protein_coding	HTR2A	chromosome:C_jacchus3.2.1:1:1:210400635:1	68014421	68082177	D	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled [Source:HGNC Symbol;Acc:HGNC:5293]
ENSCJAG00000009380	KNOWN	protein_coding	ESD	chromosome:C_jacchus3.2.1:1:1:210400635:1	68125660	68148637	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017176}  [Source:UniProtKB/TrEMBL;Acc:F7IA95]
ENSCJAG00000014193	KNOWN_BY_PROJECTION	protein_coding	TMEM136	chromosome:C_jacchus3.2.1:11:1:130397257:1	18030566	18035378	D	transmembrane protein 136 [Source:HGNC Symbol;Acc:HGNC:28280]
ENSCJAG00000012805	KNOWN_BY_PROJECTION	protein_coding	DGKI	chromosome:C_jacchus3.2.1:8:1:128169293:1	108319545	108775476	D	diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
ENSCJAG00000012786	KNOWN	protein_coding	PTN	chromosome:C_jacchus3.2.1:8:1:128169293:1	108826655	108939480	D	Pleiotrophin {ECO:0000313|EMBL:JAB09377.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023451}  [Source:UniProtKB/TrEMBL;Acc:F7IMV6]
ENSCJAG00000009392	KNOWN_BY_PROJECTION	protein_coding	LRCH1	chromosome:C_jacchus3.2.1:1:1:210400635:1	68169517	68401028	R	leucine-rich repeats and calponin homology (CH) domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20309]
ENSCJAG00000012782	KNOWN	protein_coding	CHRM2	chromosome:C_jacchus3.2.1:8:1:128169293:1	109132791	109274658	R	Muscarinic acetylcholine receptor M2 {ECO:0000313|EMBL:JAB06730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028335}  [Source:UniProtKB/TrEMBL;Acc:F7APE0]
ENSCJAG00000012769	KNOWN	protein_coding	MTPN	chromosome:C_jacchus3.2.1:8:1:128169293:1	110162239	110233863	D	Myotrophin {ECO:0000313|EMBL:JAB10269.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023414}  [Source:UniProtKB/TrEMBL;Acc:F7HNN3]
ENSCJAG00000012768	KNOWN_BY_PROJECTION	protein_coding	FAM180A	chromosome:C_jacchus3.2.1:8:1:128169293:1	110433937	110539141	D	family with sequence similarity 180, member A [Source:HGNC Symbol;Acc:HGNC:33773]
ENSCJAG00000012731	KNOWN_BY_PROJECTION	protein_coding	SLC13A4	chromosome:C_jacchus3.2.1:8:1:128169293:1	110457162	110504874	D	solute carrier family 13 (sodium/sulfate symporter), member 4 [Source:HGNC Symbol;Acc:HGNC:15827]
ENSCJAG00000014200	KNOWN_BY_PROJECTION	protein_coding	ARHGEF12	chromosome:C_jacchus3.2.1:11:1:130397257:1	18087124	18197309	D	Rho guanine nucleotide exchange factor (GEF) 12 [Source:HGNC Symbol;Acc:HGNC:14193]
ENSCJAG00000012599	KNOWN	protein_coding	NUP205	chromosome:C_jacchus3.2.1:8:1:128169293:1	110536333	110627498	R	Nuclear pore complex protein Nup205 {ECO:0000313|EMBL:JAB32737.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023309}  [Source:UniProtKB/TrEMBL;Acc:F7IB70]
ENSCJAG00000009449	NOVEL	protein_coding	ENSCJAG00000009449	chromosome:C_jacchus3.2.1:1:1:210400635:1	68409077	68409958	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017299}  [Source:UniProtKB/TrEMBL;Acc:F7IPB4]
ENSCJAG00000009454	KNOWN_BY_PROJECTION	protein_coding	KIAA0226L	chromosome:C_jacchus3.2.1:1:1:210400635:1	68532155	68588959	D	KIAA0226-like [Source:HGNC Symbol;Acc:HGNC:20420]
ENSCJAG00000009459	NOVEL	pseudogene	ENSCJAG00000009459	chromosome:C_jacchus3.2.1:1:1:210400635:1	68556074	68557373	D	<no descrition>
ENSCJAG00000016849	KNOWN_BY_PROJECTION	protein_coding	LRRC63	chromosome:C_jacchus3.2.1:1:1:210400635:1	68637750	68697061	R	leucine rich repeat containing 63 [Source:HGNC Symbol;Acc:HGNC:34296]
ENSCJAG00000014322	NOVEL	protein_coding	ENSCJAG00000014322	chromosome:C_jacchus3.2.1:11:1:130397257:1	18132379	18134108	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026352}  [Source:UniProtKB/TrEMBL;Acc:F7I9F6]
ENSCJAG00000016813	KNOWN_BY_PROJECTION	protein_coding	LCP1	chromosome:C_jacchus3.2.1:1:1:210400635:1	68728115	68790301	D	lymphocyte cytosolic protein 1 (L-plastin) [Source:HGNC Symbol;Acc:HGNC:6528]
ENSCJAG00000012532	KNOWN	protein_coding	CNOT4	chromosome:C_jacchus3.2.1:8:1:128169293:1	110677335	110822936	D	CCR4-NOT transcription complex subunit 4 isoform b {ECO:0000313|EMBL:JAB47894.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023026}  [Source:UniProtKB/TrEMBL;Acc:F7IIF6]
ENSCJAG00000007360	KNOWN_BY_PROJECTION	protein_coding	GRIK4	chromosome:C_jacchus3.2.1:11:1:130397257:1	18274272	18727307	D	glutamate receptor, ionotropic, kainate 4 [Source:HGNC Symbol;Acc:HGNC:4582]
ENSCJAG00000012515	KNOWN_BY_PROJECTION	protein_coding	STRA8	chromosome:C_jacchus3.2.1:8:1:128169293:1	110932879	110960240	R	stimulated by retinoic acid 8 [Source:HGNC Symbol;Acc:HGNC:30653]
ENSCJAG00000016797	KNOWN_BY_PROJECTION	protein_coding	CPB2	chromosome:C_jacchus3.2.1:1:1:210400635:1	68796647	69020522	D	carboxypeptidase B2 (plasma) [Source:HGNC Symbol;Acc:HGNC:2300]
ENSCJAG00000012439	KNOWN	protein_coding	WDR91	chromosome:C_jacchus3.2.1:8:1:128169293:1	110981103	111009859	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022841}; WD repeat-containing protein 91 {ECO:0000313|EMBL:JAB25567.1}  [Source:UniProtKB/TrEMBL;Acc:F7HTD3]
ENSCJAG00000007368	KNOWN	protein_coding	TBCEL	chromosome:C_jacchus3.2.1:11:1:130397257:1	18768993	18843475	D	Tubulin-specific chaperone cofactor E-like protein {ECO:0000313|EMBL:JAB16497.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013760}  [Source:UniProtKB/TrEMBL;Acc:F6WH65]
ENSCJAG00000012428	KNOWN	protein_coding	C7ORF49	chromosome:C_jacchus3.2.1:8:1:128169293:1	111015411	111017749	D	Modulator of retrovirus infection homolog isoform 1 {ECO:0000313|EMBL:JAB13304.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022761}  [Source:UniProtKB/TrEMBL;Acc:F7I8E1]
ENSCJAG00000012418	KNOWN	protein_coding	TMEM140	chromosome:C_jacchus3.2.1:8:1:128169293:1	111018115	111036293	R	Transmembrane protein 140 {ECO:0000313|EMBL:JAB08809.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051102}  [Source:UniProtKB/TrEMBL;Acc:F6ZLD7]
ENSCJAG00000016756	KNOWN	protein_coding	ZC3H13	chromosome:C_jacchus3.2.1:1:1:210400635:1	68857828	68947437	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030874}; Zinc finger CCCH domain-containing protein 13 {ECO:0000313|EMBL:JAB25169.1}  [Source:UniProtKB/TrEMBL;Acc:F7A4E2]
ENSCJAG00000022781	NOVEL	protein_coding	ENSCJAG00000022781	chromosome:C_jacchus3.2.1:8:1:128169293:1	111036039	111036262	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041364}  [Source:UniProtKB/TrEMBL;Acc:F7ENX2]
ENSCJAG00000012370	KNOWN_BY_PROJECTION	protein_coding	AGBL3	chromosome:C_jacchus3.2.1:8:1:128169293:1	111048944	111189324	R	ATP/GTP binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:27981]
ENSCJAG00000007401	KNOWN_BY_PROJECTION	protein_coding	TECTA	chromosome:C_jacchus3.2.1:11:1:130397257:1	18856611	18941094	D	tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
ENSCJAG00000007436	KNOWN	protein_coding	SC5D	chromosome:C_jacchus3.2.1:11:1:130397257:1	19043798	19060672	D	Lathosterol oxidase {ECO:0000313|EMBL:JAB15766.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046215}  [Source:UniProtKB/TrEMBL;Acc:F7C8W6]
ENSCJAG00000005505	NOVEL	pseudogene	ENSCJAG00000005505	chromosome:C_jacchus3.2.1:1:1:210400635:1	69119455	69119876	D	<no descrition>
ENSCJAG00000012295	KNOWN	protein_coding	CALD1	chromosome:C_jacchus3.2.1:8:1:128169293:1	111198503	111405063	R	Caldesmon isoform 2 {ECO:0000313|EMBL:JAB17159.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045565}  [Source:UniProtKB/TrEMBL;Acc:F6SI17]
ENSCJAG00000007446	KNOWN	protein_coding	SORL1	chromosome:C_jacchus3.2.1:11:1:130397257:1	19208804	19386595	D	Sortilin-related receptor preproprotein {ECO:0000313|EMBL:JAB11043.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014080}  [Source:UniProtKB/TrEMBL;Acc:F7HQU8]
ENSCJAG00000012283	KNOWN	protein_coding	BPGM	chromosome:C_jacchus3.2.1:8:1:128169293:1	111503249	111536289	R	Bisphosphoglycerate mutase {ECO:0000313|EMBL:JAB01889.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022512}  [Source:UniProtKB/TrEMBL;Acc:F7IFM9]
ENSCJAG00000005509	KNOWN_BY_PROJECTION	protein_coding	AAED1	chromosome:C_jacchus3.2.1:1:1:210400635:1	69145490	69157548	R	AhpC/TSA antioxidant enzyme domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16881]
ENSCJAG00000005534	NOVEL	pseudogene	ENSCJAG00000005534	chromosome:C_jacchus3.2.1:1:1:210400635:1	69196582	69196949	D	<no descrition>
ENSCJAG00000012250	KNOWN	protein_coding	AKR1B10	chromosome:C_jacchus3.2.1:8:1:128169293:1	111603541	111617782	R	Aldo-keto reductase family 1 member B10 {ECO:0000313|EMBL:JAB08700.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022483}  [Source:UniProtKB/TrEMBL;Acc:F7IMQ0]
ENSCJAG00000005536	KNOWN_BY_PROJECTION	protein_coding	ZNF484	chromosome:C_jacchus3.2.1:1:1:210400635:1	69205785	69239988	R	zinc finger protein 484 [Source:HGNC Symbol;Acc:HGNC:23385]
ENSCJAG00000032795	NOVEL	protein_coding	ENSCJAG00000032795	chromosome:C_jacchus3.2.1:1:1:210400635:1	69554021	69554941	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043006}  [Source:UniProtKB/TrEMBL;Acc:F7HYU5]
ENSCJAG00000005553	NOVEL	pseudogene	ENSCJAG00000005553	chromosome:C_jacchus3.2.1:1:1:210400635:1	69807728	69808833	R	<no descrition>
ENSCJAG00000005559	NOVEL	pseudogene	ENSCJAG00000005559	chromosome:C_jacchus3.2.1:1:1:210400635:1	69861562	69862215	R	<no descrition>
ENSCJAG00000005562	KNOWN_BY_PROJECTION	protein_coding	NFYC	chromosome:C_jacchus3.2.1:1:1:210400635:1	69938369	69939480	R	nuclear transcription factor Y, gamma [Source:HGNC Symbol;Acc:HGNC:7806]
ENSCJAG00000012231	KNOWN	protein_coding	ENSCJAG00000012231	chromosome:C_jacchus3.2.1:8:1:128169293:1	111681085	111695740	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022446}  [Source:UniProtKB/TrEMBL;Acc:F7HNF2]
ENSCJAG00000005569	KNOWN	protein_coding	DAPK1	chromosome:C_jacchus3.2.1:1:1:210400635:1	70402874	70585714	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010291}  [Source:UniProtKB/TrEMBL;Acc:F7BUF8]
ENSCJAG00000012197	KNOWN	protein_coding	SLC35B4	chromosome:C_jacchus3.2.1:8:1:128169293:1	111829960	111853336	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045599}  [Source:UniProtKB/TrEMBL;Acc:F6S7R3]
ENSCJAG00000012164	KNOWN_BY_PROJECTION	protein_coding	LRGUK	chromosome:C_jacchus3.2.1:8:1:128169293:1	111885728	112032143	R	leucine-rich repeats and guanylate kinase domain containing [Source:HGNC Symbol;Acc:HGNC:21964]
ENSCJAG00000007599	NOVEL	pseudogene	ENSCJAG00000007599	chromosome:C_jacchus3.2.1:11:1:130397257:1	19842654	19842975	R	<no descrition>
ENSCJAG00000007601	KNOWN	protein_coding	UBASH3B	chromosome:C_jacchus3.2.1:11:1:130397257:1	20398200	20565817	D	Ubiquitin-associated and SH3 domain-containing protein B {ECO:0000313|EMBL:JAB21078.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044741}  [Source:UniProtKB/TrEMBL;Acc:F7G8J9]
ENSCJAG00000007623	KNOWN_BY_PROJECTION	protein_coding	CRTAM	chromosome:C_jacchus3.2.1:11:1:130397257:1	20588045	20622178	D	cytotoxic and regulatory T cell molecule [Source:HGNC Symbol;Acc:HGNC:24313]
ENSCJAG00000007637	KNOWN_BY_PROJECTION	protein_coding	C11orf63	chromosome:C_jacchus3.2.1:11:1:130397257:1	20640385	20712400	D	chromosome 11 open reading frame 63 [Source:HGNC Symbol;Acc:HGNC:26288]
ENSCJAG00000005635	KNOWN	protein_coding	CTSL1	chromosome:C_jacchus3.2.1:1:1:210400635:1	70606795	70612468	D	Cathepsin L1 isoform 1 preproprotein {ECO:0000313|EMBL:JAB03564.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010344}  [Source:UniProtKB/TrEMBL;Acc:F6ZT12]
ENSCJAG00000012082	KNOWN_BY_PROJECTION	protein_coding	EXOC4	chromosome:C_jacchus3.2.1:8:1:128169293:1	112084548	112920865	R	exocyst complex component 4 [Source:HGNC Symbol;Acc:HGNC:30389]
ENSCJAG00000007645	KNOWN_BY_PROJECTION	protein_coding	BSX	chromosome:C_jacchus3.2.1:11:1:130397257:1	20729784	20733771	R	brain-specific homeobox [Source:HGNC Symbol;Acc:HGNC:20450]
ENSCJAG00000007648	KNOWN_BY_PROJECTION	protein_coding	HSPA8	chromosome:C_jacchus3.2.1:11:1:130397257:1	20808398	20813704	R	heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:HGNC:5241]
ENSCJAG00000012161	NOVEL	protein_coding	ENSCJAG00000012161	chromosome:C_jacchus3.2.1:8:1:128169293:1	112603912	112604300	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022300}  [Source:UniProtKB/TrEMBL;Acc:F7AA75]
ENSCJAG00000012076	NOVEL	pseudogene	ENSCJAG00000012076	chromosome:C_jacchus3.2.1:8:1:128169293:1	113027044	113027963	R	<no descrition>
ENSCJAG00000012067	NOVEL	protein_coding	ENSCJAG00000012067	chromosome:C_jacchus3.2.1:8:1:128169293:1	113090815	113200725	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047049}  [Source:UniProtKB/TrEMBL;Acc:F7I8Z6]
ENSCJAG00000035792	NOVEL	protein_coding	ENSCJAG00000035792	chromosome:C_jacchus3.2.1:8:1:128169293:1	113090845	113370661	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042882}  [Source:UniProtKB/TrEMBL;Acc:F6Z4F0]
ENSCJAG00000000259	NOVEL	pseudogene	ENSCJAG00000000259	chromosome:C_jacchus3.2.1:8:1:128169293:1	113461473	113461868	R	<no descrition>
ENSCJAG00000007685	KNOWN	protein_coding	CLMP	chromosome:C_jacchus3.2.1:11:1:130397257:1	20824644	20971018	R	CXADR-like membrane protein {ECO:0000313|EMBL:JAB03725.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014242}  [Source:UniProtKB/TrEMBL;Acc:F7HQN3]
ENSCJAG00000007694	NOVEL	protein_coding	ENSCJAG00000007694	chromosome:C_jacchus3.2.1:11:1:130397257:1	20833825	20837356	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014243}  [Source:UniProtKB/TrEMBL;Acc:F7HQN1]
ENSCJAG00000031796	NOVEL	protein_coding	ENSCJAG00000031796	chromosome:C_jacchus3.2.1:11:1:130397257:1	20838106	20838589	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036182}  [Source:UniProtKB/TrEMBL;Acc:F7H3M2]
ENSCJAG00000037655	NOVEL	protein_coding	ENSCJAG00000037655	chromosome:C_jacchus3.2.1:11:1:130397257:1	20838732	20970826	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044509}  [Source:UniProtKB/TrEMBL;Acc:F7GR47]
ENSCJAG00000000260	KNOWN_BY_PROJECTION	protein_coding	PLXNA4	chromosome:C_jacchus3.2.1:8:1:128169293:1	113537097	114069205	D	plexin A4 [Source:HGNC Symbol;Acc:HGNC:9102]
ENSCJAG00000007695	NOVEL	pseudogene	ENSCJAG00000007695	chromosome:C_jacchus3.2.1:11:1:130397257:1	20901687	20902151	R	<no descrition>
ENSCJAG00000007699	KNOWN_BY_PROJECTION	protein_coding	GRAMD1B	chromosome:C_jacchus3.2.1:11:1:130397257:1	21340224	21400957	D	GRAM domain containing 1B [Source:HGNC Symbol;Acc:HGNC:29214]
ENSCJAG00000000283	NOVEL	protein_coding	ENSCJAG00000000283	chromosome:C_jacchus3.2.1:8:1:128169293:1	114246505	114247386	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000000473}  [Source:UniProtKB/TrEMBL;Acc:F7F9P2]
ENSCJAG00000016372	KNOWN_BY_PROJECTION	protein_coding	PODXL	chromosome:C_jacchus3.2.1:8:1:128169293:1	114666935	114725768	D	podocalyxin-like [Source:HGNC Symbol;Acc:HGNC:9171]
ENSCJAG00000007754	KNOWN	protein_coding	SCN3B	chromosome:C_jacchus3.2.1:11:1:130397257:1	21411436	21443801	R	Sodium channel subunit beta-3 {ECO:0000313|EMBL:JAB12730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014398}  [Source:UniProtKB/TrEMBL;Acc:F7I734]
ENSCJAG00000007782	KNOWN	protein_coding	ZNF202	chromosome:C_jacchus3.2.1:11:1:130397257:1	21516396	21534003	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014413}; Zinc finger protein 202 {ECO:0000313|EMBL:JAB05444.1}  [Source:UniProtKB/TrEMBL;Acc:F7I290]
ENSCJAG00000016384	KNOWN	protein_coding	MKLN1	chromosome:C_jacchus3.2.1:8:1:128169293:1	114741536	114938646	R	Muskelin isoform 2 {ECO:0000313|EMBL:JAB21020.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030214}  [Source:UniProtKB/TrEMBL;Acc:F7BSH7]
ENSCJAG00000035145	NOVEL	protein_coding	ENSCJAG00000035145	chromosome:C_jacchus3.2.1:1:1:210400635:1	70660253	70661719	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051730}  [Source:UniProtKB/TrEMBL;Acc:F7CE40]
ENSCJAG00000032156	NOVEL	protein_coding	ENSCJAG00000032156	chromosome:C_jacchus3.2.1:1:1:210400635:1	70679834	70680895	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050274}  [Source:UniProtKB/TrEMBL;Acc:F7EZ35]
ENSCJAG00000033311	NOVEL	protein_coding	ENSCJAG00000033311	chromosome:C_jacchus3.2.1:1:1:210400635:1	70699773	70701615	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042259}  [Source:UniProtKB/TrEMBL;Acc:F7AQW5]
ENSCJAG00000031450	NOVEL	protein_coding	ENSCJAG00000031450	chromosome:C_jacchus3.2.1:1:1:210400635:1	70737571	70738107	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045909}  [Source:UniProtKB/TrEMBL;Acc:F6TNX1]
ENSCJAG00000005663	NOVEL	protein_coding	ENSCJAG00000005663	chromosome:C_jacchus3.2.1:1:1:210400635:1	70808592	70811635	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010368}  [Source:UniProtKB/TrEMBL;Acc:F6Z9W0]
ENSCJAG00000007785	KNOWN_BY_PROJECTION	protein_coding	TMEM225	chromosome:C_jacchus3.2.1:11:1:130397257:1	21673815	21676535	R	transmembrane protein 225 [Source:HGNC Symbol;Acc:HGNC:32390]
ENSCJAG00000023247	KNOWN	protein_coding	DIRAS2	chromosome:C_jacchus3.2.1:1:1:210400635:1	71131098	71162661	R	GTP-binding protein Di-Ras2 {ECO:0000313|EMBL:JAB01610.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041761}  [Source:UniProtKB/TrEMBL;Acc:F7FTA1]
ENSCJAG00000016423	NOVEL	pseudogene	ENSCJAG00000016423	chromosome:C_jacchus3.2.1:8:1:128169293:1	115025159	115025567	R	<no descrition>
ENSCJAG00000007797	KNOWN_BY_PROJECTION	protein_coding	OR10G6	chromosome:C_jacchus3.2.1:11:1:130397257:1	21780312	21781370	R	olfactory receptor, family 10, subfamily G, member 6 [Source:HGNC Symbol;Acc:HGNC:14836]
ENSCJAG00000033421	KNOWN_BY_PROJECTION	protein_coding	ZNF131	chromosome:C_jacchus3.2.1:8:1:128169293:1	115448762	115449469	D	zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
ENSCJAG00000016426	NOVEL	pseudogene	ENSCJAG00000016426	chromosome:C_jacchus3.2.1:8:1:128169293:1	115463713	115464215	R	<no descrition>
ENSCJAG00000031437	NOVEL	protein_coding	ENSCJAG00000031437	chromosome:C_jacchus3.2.1:1:1:210400635:1	71333642	71334466	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050220}  [Source:UniProtKB/TrEMBL;Acc:F7FCA5]
ENSCJAG00000016429	NOVEL	pseudogene	ENSCJAG00000016429	chromosome:C_jacchus3.2.1:8:1:128169293:1	115477486	115480033	R	<no descrition>
ENSCJAG00000022109	KNOWN_BY_PROJECTION	protein_coding	OR10G8	chromosome:C_jacchus3.2.1:11:1:130397257:1	21797020	21803656	D	olfactory receptor, family 10, subfamily G, member 8 [Source:HGNC Symbol;Acc:HGNC:14845]
ENSCJAG00000016430	KNOWN_BY_PROJECTION	protein_coding	KLF14	chromosome:C_jacchus3.2.1:8:1:128169293:1	115560504	115562919	D	Kruppel-like factor 14 [Source:HGNC Symbol;Acc:HGNC:23025]
ENSCJAG00000036931	KNOWN_BY_PROJECTION	protein_coding	TSGA13	chromosome:C_jacchus3.2.1:8:1:128169293:1	115602810	115619917	D	testis specific, 13 [Source:HGNC Symbol;Acc:HGNC:12369]
ENSCJAG00000005666	KNOWN	protein_coding	SYK	chromosome:C_jacchus3.2.1:1:1:210400635:1	71400650	71480790	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043642}  [Source:UniProtKB/TrEMBL;Acc:F7IA28]
ENSCJAG00000035039	NOVEL	pseudogene	ENSCJAG00000035039	chromosome:C_jacchus3.2.1:11:1:130397257:1	21916457	21917387	R	<no descrition>
ENSCJAG00000016441	KNOWN	protein_coding	COPG2	chromosome:C_jacchus3.2.1:8:1:128169293:1	115619822	115748568	D	Coatomer subunit gamma {ECO:0000256|PIRNR:PIRNR037093}  [Source:UniProtKB/TrEMBL;Acc:F6YQY4]
ENSCJAG00000007804	KNOWN_BY_PROJECTION	protein_coding	VWA5A	chromosome:C_jacchus3.2.1:11:1:130397257:1	21939795	21968187	D	von Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]
ENSCJAG00000022115	NOVEL	protein_coding	ENSCJAG00000022115	chromosome:C_jacchus3.2.1:11:1:130397257:1	22044469	22056308	D	Olfactory receptor {ECO:0000256|RuleBase:RU000688}  [Source:UniProtKB/TrEMBL;Acc:F7FIV1]
ENSCJAG00000031317	NOVEL	pseudogene	ENSCJAG00000031317	chromosome:C_jacchus3.2.1:11:1:130397257:1	22129855	22130786	R	<no descrition>
ENSCJAG00000016468	NOVEL	protein_coding	ENSCJAG00000016468	chromosome:C_jacchus3.2.1:8:1:128169293:1	115649210	115649628	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000030308}  [Source:UniProtKB/TrEMBL;Acc:F6Y781]
ENSCJAG00000016472	NOVEL	pseudogene	ENSCJAG00000016472	chromosome:C_jacchus3.2.1:8:1:128169293:1	115723184	115724159	R	<no descrition>
ENSCJAG00000010760	NOVEL	protein_coding	ENSCJAG00000010760	chromosome:C_jacchus3.2.1:8:1:128169293:1	115748521	115768940	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048789}  [Source:UniProtKB/TrEMBL;Acc:F6Q8M8]
ENSCJAG00000010737	KNOWN	protein_coding	CEP41	chromosome:C_jacchus3.2.1:8:1:128169293:1	115815512	115863385	D	Centrosomal protein of 41 kDa isoform 1 {ECO:0000313|EMBL:JAB07089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019779}  [Source:UniProtKB/TrEMBL;Acc:F6WDE2]
ENSCJAG00000010715	KNOWN_BY_PROJECTION	protein_coding	CPA1	chromosome:C_jacchus3.2.1:8:1:128169293:1	115871813	115878776	R	carboxypeptidase A1 (pancreatic) [Source:HGNC Symbol;Acc:HGNC:2296]
ENSCJAG00000010683	KNOWN_BY_PROJECTION	protein_coding	CPA5	chromosome:C_jacchus3.2.1:8:1:128169293:1	115889328	115915344	R	carboxypeptidase A5 [Source:HGNC Symbol;Acc:HGNC:15722]
ENSCJAG00000010655	KNOWN_BY_PROJECTION	protein_coding	CPA4	chromosome:C_jacchus3.2.1:8:1:128169293:1	115939705	115973384	R	carboxypeptidase A4 [Source:HGNC Symbol;Acc:HGNC:15740]
ENSCJAG00000010612	KNOWN_BY_PROJECTION	protein_coding	CPA2	chromosome:C_jacchus3.2.1:8:1:128169293:1	115977572	115999757	R	carboxypeptidase A2 (pancreatic) [Source:HGNC Symbol;Acc:HGNC:2297]
ENSCJAG00000010598	KNOWN_BY_PROJECTION	protein_coding	SSMEM1	chromosome:C_jacchus3.2.1:8:1:128169293:1	116028795	116036699	R	serine-rich single-pass membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29580]
ENSCJAG00000010584	KNOWN	protein_coding	TMEM209	chromosome:C_jacchus3.2.1:8:1:128169293:1	116039658	116080235	D	Transmembrane protein 209 {ECO:0000313|EMBL:JAB01958.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019525}  [Source:UniProtKB/TrEMBL;Acc:F6RJA4]
ENSCJAG00000010579	NOVEL	protein_coding	ENSCJAG00000010579	chromosome:C_jacchus3.2.1:8:1:128169293:1	116105429	116106886	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019507}  [Source:UniProtKB/TrEMBL;Acc:F6RVS2]
ENSCJAG00000010575	NOVEL	pseudogene	ENSCJAG00000010575	chromosome:C_jacchus3.2.1:8:1:128169293:1	116113504	116113683	R	<no descrition>
ENSCJAG00000010557	KNOWN_BY_PROJECTION	protein_coding	KLHDC10	chromosome:C_jacchus3.2.1:8:1:128169293:1	116115416	116182195	R	kelch domain containing 10 [Source:HGNC Symbol;Acc:HGNC:22194]
ENSCJAG00000010536	KNOWN_BY_PROJECTION	protein_coding	ZC3HC1	chromosome:C_jacchus3.2.1:8:1:128169293:1	116202150	116228783	D	zinc finger, C3HC-type containing 1 [Source:HGNC Symbol;Acc:HGNC:29913]
ENSCJAG00000010520	KNOWN_BY_PROJECTION	protein_coding	UBE2H	chromosome:C_jacchus3.2.1:8:1:128169293:1	116379084	116424369	D	ubiquitin-conjugating enzyme E2H [Source:HGNC Symbol;Acc:HGNC:12484]
ENSCJAG00000010505	KNOWN_BY_PROJECTION	protein_coding	NRF1	chromosome:C_jacchus3.2.1:8:1:128169293:1	116513327	116618905	R	nuclear respiratory factor 1 [Source:HGNC Symbol;Acc:HGNC:7996]
ENSCJAG00000010399	KNOWN	protein_coding	STRIP2	chromosome:C_jacchus3.2.1:8:1:128169293:1	116784753	116840407	R	Protein FAM40B isoform a {ECO:0000313|EMBL:JAB13223.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019368}  [Source:UniProtKB/TrEMBL;Acc:F6QP19]
ENSCJAG00000010323	KNOWN_BY_PROJECTION	protein_coding	AHCYL2	chromosome:C_jacchus3.2.1:8:1:128169293:1	116843934	117051377	R	adenosylhomocysteinase-like 2 [Source:HGNC Symbol;Acc:HGNC:22204]
ENSCJAG00000010304	KNOWN_BY_PROJECTION	protein_coding	SMO	chromosome:C_jacchus3.2.1:8:1:128169293:1	117060722	117086874	R	smoothened, frizzled class receptor [Source:HGNC Symbol;Acc:HGNC:11119]
ENSCJAG00000010295	KNOWN	protein_coding	TSPAN33	chromosome:C_jacchus3.2.1:8:1:128169293:1	117107491	117134617	R	Tetraspanin-33 {ECO:0000313|EMBL:JAB04484.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018969}  [Source:UniProtKB/TrEMBL;Acc:F7GV39]
ENSCJAG00000018150	NOVEL	pseudogene	ENSCJAG00000018150	chromosome:C_jacchus3.2.1:8:1:128169293:1	117218652	117219404	R	<no descrition>
ENSCJAG00000018085	KNOWN	protein_coding	TNPO3	chromosome:C_jacchus3.2.1:8:1:128169293:1	117220234	117313837	D	Transportin-3 isoform 1 {ECO:0000313|EMBL:JAB03547.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033563}  [Source:UniProtKB/TrEMBL;Acc:F6SUW5]
ENSCJAG00000018061	KNOWN	protein_coding	IRF5	chromosome:C_jacchus3.2.1:8:1:128169293:1	117319409	117334558	R	Interferon regulatory factor 5 isoform d {ECO:0000313|EMBL:JAB06543.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033393}  [Source:UniProtKB/TrEMBL;Acc:F6SJR4]
ENSCJAG00000018058	NOVEL	protein_coding	ENSCJAG00000018058	chromosome:C_jacchus3.2.1:8:1:128169293:1	117336299	117336891	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033357}  [Source:UniProtKB/TrEMBL;Acc:F6T766]
ENSCJAG00000018056	NOVEL	protein_coding	ENSCJAG00000018056	chromosome:C_jacchus3.2.1:8:1:128169293:1	117347584	117353530	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000033353}  [Source:UniProtKB/TrEMBL;Acc:F6TGN4]
ENSCJAG00000018035	KNOWN_BY_PROJECTION	protein_coding	KCP	chromosome:C_jacchus3.2.1:8:1:128169293:1	117355411	117385269	D	kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
ENSCJAG00000018031	KNOWN	protein_coding	ATP6V1F	chromosome:C_jacchus3.2.1:8:1:128169293:1	117398772	117402268	R	V-type proton ATPase subunit F {ECO:0000256|PIRNR:PIRNR015945}  [Source:UniProtKB/TrEMBL;Acc:F6PTY0]
ENSCJAG00000017889	KNOWN_BY_PROJECTION	protein_coding	FLNC	chromosome:C_jacchus3.2.1:8:1:128169293:1	117406964	117438787	R	filamin C, gamma [Source:HGNC Symbol;Acc:HGNC:3756]
ENSCJAG00000017866	KNOWN_BY_PROJECTION	protein_coding	CCDC136	chromosome:C_jacchus3.2.1:8:1:128169293:1	117447204	117480189	R	coiled-coil domain containing 136 [Source:HGNC Symbol;Acc:HGNC:22225]
ENSCJAG00000017852	KNOWN_BY_PROJECTION	protein_coding	OPN1SW	chromosome:C_jacchus3.2.1:8:1:128169293:1	117499518	117502850	D	opsin 1 (cone pigments), short-wave-sensitive [Source:HGNC Symbol;Acc:HGNC:1012]
ENSCJAG00000017825	KNOWN_BY_PROJECTION	protein_coding	CALU	chromosome:C_jacchus3.2.1:8:1:128169293:1	117504355	117537651	R	calumenin [Source:HGNC Symbol;Acc:HGNC:1458]
ENSCJAG00000017818	KNOWN_BY_PROJECTION	protein_coding	FAM71F1	chromosome:C_jacchus3.2.1:8:1:128169293:1	117546087	117565817	R	family with sequence similarity 71, member F1 [Source:HGNC Symbol;Acc:HGNC:30704]
ENSCJAG00000017814	KNOWN_BY_PROJECTION	protein_coding	FAM71F2	chromosome:C_jacchus3.2.1:8:1:128169293:1	117592839	117606823	R	family with sequence similarity 71, member F2 [Source:HGNC Symbol;Acc:HGNC:27998]
ENSCJAG00000017811	KNOWN	protein_coding	HILPDA	chromosome:C_jacchus3.2.1:8:1:128169293:1	117618786	117621059	R	Hypoxia-inducible lipid droplet-associated protein {ECO:0000313|EMBL:JAB05971.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032850}  [Source:UniProtKB/TrEMBL;Acc:F7DI02]
ENSCJAG00000017770	KNOWN	protein_coding	IMPDH1	chromosome:C_jacchus3.2.1:8:1:128169293:1	117669360	117690072	D	Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_03156}  [Source:UniProtKB/TrEMBL;Acc:F7EBY6]
ENSCJAG00000017731	KNOWN	protein_coding	RBM28	chromosome:C_jacchus3.2.1:8:1:128169293:1	117739492	117771578	D	RNA-binding protein 28 isoform 1 {ECO:0000313|EMBL:JAB03587.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032731}  [Source:UniProtKB/TrEMBL;Acc:F7GVU1]
ENSCJAG00000017730	NOVEL	pseudogene	ENSCJAG00000017730	chromosome:C_jacchus3.2.1:8:1:128169293:1	117776527	117777354	D	<no descrition>
ENSCJAG00000017729	KNOWN	protein_coding	LEP	chromosome:C_jacchus3.2.1:8:1:128169293:1	117820841	117823781	R	Leptin {ECO:0000256|PIRNR:PIRNR001837}  [Source:UniProtKB/TrEMBL;Acc:F7HGW1]
ENSCJAG00000017668	KNOWN	protein_coding	SND1	chromosome:C_jacchus3.2.1:8:1:128169293:1	117985148	118439881	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032645}  [Source:UniProtKB/TrEMBL;Acc:F7DYR1]
ENSCJAG00000017723	KNOWN_BY_PROJECTION	protein_coding	LRRC4	chromosome:C_jacchus3.2.1:8:1:128169293:1	118047953	118050294	D	leucine rich repeat containing 4 [Source:HGNC Symbol;Acc:HGNC:15586]
ENSCJAG00000017713	NOVEL	protein_coding	ENSCJAG00000017713	chromosome:C_jacchus3.2.1:8:1:128169293:1	118254223	118255373	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052362}  [Source:UniProtKB/TrEMBL;Acc:F7INR6]
ENSCJAG00000017652	KNOWN_BY_PROJECTION	protein_coding	PAX4	chromosome:C_jacchus3.2.1:8:1:128169293:1	118477223	118484680	D	paired box 4 [Source:HGNC Symbol;Acc:HGNC:8618]
ENSCJAG00000017639	NOVEL	protein_coding	FSCN3	chromosome:C_jacchus3.2.1:8:1:128169293:1	118491207	118500514	R	Fascin {ECO:0000256|PIRNR:PIRNR005682}  [Source:UniProtKB/TrEMBL;Acc:B0VXF4]
ENSCJAG00000017604	KNOWN	protein_coding	ARF5	chromosome:C_jacchus3.2.1:8:1:128169293:1	118502089	118505353	R	ADP-ribosylation factor 5 {ECO:0000313|EMBL:JAB08797.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032489}  [Source:UniProtKB/TrEMBL;Acc:F7HBX3]
ENSCJAG00000017602	KNOWN	protein_coding	GCC1	chromosome:C_jacchus3.2.1:8:1:128169293:1	118508645	118512090	D	GRIP and coiled-coil domain-containing protein 1 {ECO:0000313|EMBL:JAB10646.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032427}  [Source:UniProtKB/TrEMBL;Acc:F7E0Q0]
ENSCJAG00000009351	NOVEL	protein_coding	ENSCJAG00000009351	chromosome:C_jacchus3.2.1:8:1:128169293:1	118545129	118563606	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017115}  [Source:UniProtKB/TrEMBL;Acc:F7IJQ3]
ENSCJAG00000017598	KNOWN_BY_PROJECTION	protein_coding	ZNF800	chromosome:C_jacchus3.2.1:8:1:128169293:1	118722914	118744703	D	zinc finger protein 800 [Source:HGNC Symbol;Acc:HGNC:27267]
ENSCJAG00000017585	KNOWN_BY_PROJECTION	protein_coding	GRM8	chromosome:C_jacchus3.2.1:8:1:128169293:1	118894981	119722945	D	glutamate receptor, metabotropic 8 [Source:HGNC Symbol;Acc:HGNC:4600]
ENSCJAG00000034447	NOVEL	protein_coding	ENSCJAG00000034447	chromosome:C_jacchus3.2.1:8:1:128169293:1	120815360	120815836	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046301}  [Source:UniProtKB/TrEMBL;Acc:F6YSQ7]
ENSCJAG00000017555	KNOWN_BY_PROJECTION	protein_coding	POT1	chromosome:C_jacchus3.2.1:8:1:128169293:1	121291797	121422452	D	protection of telomeres 1 [Source:HGNC Symbol;Acc:HGNC:17284]
ENSCJAG00000017553	NOVEL	protein_coding	ENSCJAG00000017553	chromosome:C_jacchus3.2.1:8:1:128169293:1	121461580	121474244	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032339}  [Source:UniProtKB/TrEMBL;Acc:F7GRA4]
ENSCJAG00000017546	KNOWN_BY_PROJECTION	protein_coding	GPR37	chromosome:C_jacchus3.2.1:8:1:128169293:1	121486567	121507423	D	G protein-coupled receptor 37 (endothelin receptor type B-like) [Source:HGNC Symbol;Acc:HGNC:4494]
ENSCJAG00000017545	KNOWN_BY_PROJECTION	protein_coding	TMEM229A	chromosome:C_jacchus3.2.1:8:1:128169293:1	122060328	122179771	D	transmembrane protein 229A [Source:HGNC Symbol;Acc:HGNC:37279]
ENSCJAG00000017536	KNOWN_BY_PROJECTION	protein_coding	SPAM1	chromosome:C_jacchus3.2.1:8:1:128169293:1	122248878	122275501	R	sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) [Source:HGNC Symbol;Acc:HGNC:11217]
ENSCJAG00000017533	KNOWN_BY_PROJECTION	protein_coding	HYAL4	chromosome:C_jacchus3.2.1:8:1:128169293:1	122339486	122366700	R	hyaluronoglucosaminidase 4 [Source:HGNC Symbol;Acc:HGNC:5323]
ENSCJAG00000017508	KNOWN_BY_PROJECTION	protein_coding	WASL	chromosome:C_jacchus3.2.1:8:1:128169293:1	122451925	122518149	D	Wiskott-Aldrich syndrome-like [Source:HGNC Symbol;Acc:HGNC:12735]
ENSCJAG00000032951	NOVEL	protein_coding	ENSCJAG00000032951	chromosome:C_jacchus3.2.1:8:1:128169293:1	122461081	122463088	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047816}  [Source:UniProtKB/TrEMBL;Acc:F7H7L2]
ENSCJAG00000017483	KNOWN_BY_PROJECTION	protein_coding	LMOD2	chromosome:C_jacchus3.2.1:8:1:128169293:1	122532589	122541022	R	leiomodin 2 (cardiac) [Source:HGNC Symbol;Acc:HGNC:6648]
ENSCJAG00000017456	KNOWN	protein_coding	ASB15	chromosome:C_jacchus3.2.1:8:1:128169293:1	122559180	122589377	R	Ankyrin repeat and SOCS box protein 15 {ECO:0000313|EMBL:JAB36688.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044073}  [Source:UniProtKB/TrEMBL;Acc:F7H264]
ENSCJAG00000017449	KNOWN	protein_coding	ENSCJAG00000017449	chromosome:C_jacchus3.2.1:8:1:128169293:1	122654759	122670077	D	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 {ECO:0000313|EMBL:JAB27612.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032143}  [Source:UniProtKB/TrEMBL;Acc:F7GKU5]
ENSCJAG00000017429	KNOWN_BY_PROJECTION	protein_coding	IQUB	chromosome:C_jacchus3.2.1:8:1:128169293:1	122690476	122741868	D	IQ motif and ubiquitin domain containing [Source:HGNC Symbol;Acc:HGNC:21995]
ENSCJAG00000017422	KNOWN_BY_PROJECTION	protein_coding	SLC13A1	chromosome:C_jacchus3.2.1:8:1:128169293:1	123016094	123118078	D	solute carrier family 13 (sodium/sulfate symporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10916]
ENSCJAG00000017417	NOVEL	pseudogene	ENSCJAG00000017417	chromosome:C_jacchus3.2.1:8:1:128169293:1	123384487	123385280	R	<no descrition>
ENSCJAG00000017339	KNOWN_BY_PROJECTION	protein_coding	CADPS2	chromosome:C_jacchus3.2.1:8:1:128169293:1	123387491	124003798	D	Ca++-dependent secretion activator 2 [Source:HGNC Symbol;Acc:HGNC:16018]
ENSCJAG00000017415	NOVEL	protein_coding	ENSCJAG00000017415	chromosome:C_jacchus3.2.1:8:1:128169293:1	123537244	123537723	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032069}  [Source:UniProtKB/TrEMBL;Acc:F7HCE1]
ENSCJAG00000017406	NOVEL	pseudogene	ENSCJAG00000017406	chromosome:C_jacchus3.2.1:8:1:128169293:1	123567255	123568703	D	<no descrition>
ENSCJAG00000017404	NOVEL	pseudogene	ENSCJAG00000017404	chromosome:C_jacchus3.2.1:8:1:128169293:1	123717926	123718416	D	<no descrition>
ENSCJAG00000017326	KNOWN	protein_coding	FEZF1	chromosome:C_jacchus3.2.1:8:1:128169293:1	124020075	124023074	D	Fez family zinc finger protein 1 isoform 1 {ECO:0000313|EMBL:JAB18463.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031906}  [Source:UniProtKB/TrEMBL;Acc:F7I2T8]
ENSCJAG00000017282	KNOWN	protein_coding	AASS	chromosome:C_jacchus3.2.1:8:1:128169293:1	124165036	124240696	D	Alpha-aminoadipic semialdehyde synthase, mitochondrial {ECO:0000313|EMBL:JAB26815.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049419}  [Source:UniProtKB/TrEMBL;Acc:F7CE76]
ENSCJAG00000017225	KNOWN_BY_PROJECTION	protein_coding	PTPRZ1	chromosome:C_jacchus3.2.1:8:1:128169293:1	124257992	124443243	R	protein tyrosine phosphatase, receptor-type, Z polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:9685]
ENSCJAG00000017221	NOVEL	pseudogene	ENSCJAG00000017221	chromosome:C_jacchus3.2.1:8:1:128169293:1	124930642	124931218	D	<no descrition>
ENSCJAG00000017203	KNOWN	protein_coding	FAM3C	chromosome:C_jacchus3.2.1:8:1:128169293:1	124963692	125012894	D	Protein FAM3C {ECO:0000313|EMBL:JAB08929.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031665}  [Source:UniProtKB/TrEMBL;Acc:F7IA37]
ENSCJAG00000017199	KNOWN_BY_PROJECTION	protein_coding	WNT16	chromosome:C_jacchus3.2.1:8:1:128169293:1	125026704	125042052	R	wingless-type MMTV integration site family, member 16 [Source:HGNC Symbol;Acc:HGNC:16267]
ENSCJAG00000017180	KNOWN_BY_PROJECTION	protein_coding	CPED1	chromosome:C_jacchus3.2.1:8:1:128169293:1	125062556	125385819	R	cadherin-like and PC-esterase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26159]
ENSCJAG00000017145	KNOWN	protein_coding	ING3	chromosome:C_jacchus3.2.1:8:1:128169293:1	125399112	125428788	R	Inhibitor of growth protein 3 isoform 1 {ECO:0000313|EMBL:JAB05009.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031565}  [Source:UniProtKB/TrEMBL;Acc:F7HLM0]
ENSCJAG00000017120	KNOWN	protein_coding	TSPAN12	chromosome:C_jacchus3.2.1:8:1:128169293:1	125429048	125595198	D	Tetraspanin-12 {ECO:0000313|EMBL:JAB06864.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031488}  [Source:UniProtKB/TrEMBL;Acc:F7I7V6]
ENSCJAG00000017141	NOVEL	pseudogene	ENSCJAG00000017141	chromosome:C_jacchus3.2.1:8:1:128169293:1	125432618	125433623	D	<no descrition>
ENSCJAG00000035403	NOVEL	pseudogene	ENSCJAG00000035403	chromosome:C_jacchus3.2.1:8:1:128169293:1	127451482	127452445	D	<no descrition>
ENSCJAG00000033240	NOVEL	pseudogene	ENSCJAG00000033240	chromosome:C_jacchus3.2.1:8:1:128169293:1	128075710	128076207	D	<no descrition>
ENSCJAG00000032356	NOVEL	protein_coding	ENSCJAG00000032356	chromosome:C_jacchus3.2.1:8:1:128169293:1	128076995	128077565	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048906}  [Source:UniProtKB/TrEMBL;Acc:F6R3H1]
ENSCJAG00000003668	NOVEL	protein_coding	ENSCJAG00000003668	scaffold:C_jacchus3.2.1:GL285015.1:1:77026:1	55627	58129	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006645}  [Source:UniProtKB/TrEMBL;Acc:H9KW14]
ENSCJAG00000007948	NOVEL	pseudogene	ENSCJAG00000007948	scaffold:C_jacchus3.2.1:ACFV01189903.1:1:5211:1	1034	1909	D	<no descrition>
ENSCJAG00000005316	NOVEL	protein_coding	ENSCJAG00000005316	scaffold:C_jacchus3.2.1:GL288634.1:1:10969:1	2397	3042	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009715}  [Source:UniProtKB/TrEMBL;Acc:H9KW66]
ENSCJAG00000000889	NOVEL	protein_coding	ENSCJAG00000000889	scaffold:C_jacchus3.2.1:ACFV01184652.1:1:10854:1	1038	9296	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046005}  [Source:UniProtKB/TrEMBL;Acc:H9KY59]
ENSCJAG00000002884	KNOWN_BY_PROJECTION	protein_coding	MCHR1	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	2055833	2059541	D	melanin-concentrating hormone receptor 1 [Source:HGNC Symbol;Acc:HGNC:4479]
ENSCJAG00000032579	NOVEL	protein_coding	ENSCJAG00000032579	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	114440	119789	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010542}  [Source:UniProtKB/TrEMBL;Acc:H9KW97]
ENSCJAG00000033325	NOVEL	protein_coding	ENSCJAG00000033325	scaffold:C_jacchus3.2.1:GL286657.1:1:19404:1	5345	6129	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048069}  [Source:UniProtKB/TrEMBL;Acc:H9KYB0]
ENSCJAG00000034122	NOVEL	protein_coding	ENSCJAG00000034122	chromosome:C_jacchus3.2.1:6:1:158406734:1	14942	15388	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045917}  [Source:UniProtKB/TrEMBL;Acc:F6TDB5]
ENSCJAG00000035492	NOVEL	protein_coding	ENSCJAG00000035492	chromosome:C_jacchus3.2.1:6:1:158406734:1	23666	24134	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035280}  [Source:UniProtKB/TrEMBL;Acc:F7IFW6]
ENSCJAG00000005261	KNOWN_BY_PROJECTION	protein_coding	TUBGCP5	chromosome:C_jacchus3.2.1:6:1:158406734:1	33835	65304	D	tubulin, gamma complex associated protein 5 [Source:HGNC Symbol;Acc:HGNC:18600]
ENSCJAG00000005289	KNOWN	protein_coding	CYFIP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	80355	186643	D	Cytoplasmic FMR1-interacting protein 1 isoform a {ECO:0000313|EMBL:JAB02432.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009934}  [Source:UniProtKB/TrEMBL;Acc:F7HHC7]
ENSCJAG00000005448	KNOWN	protein_coding	NIPA2	chromosome:C_jacchus3.2.1:6:1:158406734:1	191679	218747	R	Magnesium transporter NIPA2 isoform a {ECO:0000313|EMBL:JAB04344.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048275}  [Source:UniProtKB/TrEMBL;Acc:F7DQD5]
ENSCJAG00000005463	KNOWN_BY_PROJECTION	protein_coding	NIPA1	chromosome:C_jacchus3.2.1:6:1:158406734:1	234884	264140	R	non imprinted in Prader-Willi/Angelman syndrome 1 [Source:HGNC Symbol;Acc:HGNC:17043]
ENSCJAG00000005954	KNOWN_BY_PROJECTION	protein_coding	MAGEL2	chromosome:C_jacchus3.2.1:6:1:158406734:1	411387	416005	R	MAGE-like 2 [Source:HGNC Symbol;Acc:HGNC:6814]
ENSCJAG00000003738	NOVEL	protein_coding	ENSCJAG00000003738	chromosome:C_jacchus3.2.1:6:1:158406734:1	450681	451893	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006774}  [Source:UniProtKB/TrEMBL;Acc:F7EP75]
ENSCJAG00000003742	NOVEL	pseudogene	ENSCJAG00000003742	chromosome:C_jacchus3.2.1:6:1:158406734:1	575152	576731	R	<no descrition>
ENSCJAG00000003751	NOVEL	protein_coding	ENSCJAG00000003751	chromosome:C_jacchus3.2.1:6:1:158406734:1	598904	601041	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006788}  [Source:UniProtKB/TrEMBL;Acc:F7EBL2]
ENSCJAG00000003753	NOVEL	protein_coding	ENSCJAG00000003753	chromosome:C_jacchus3.2.1:6:1:158406734:1	1020761	1035332	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006796}  [Source:UniProtKB/TrEMBL;Acc:F7EBC5]
ENSCJAG00000003759	NOVEL	protein_coding	ENSCJAG00000003759	chromosome:C_jacchus3.2.1:6:1:158406734:1	1036204	1038495	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006802}  [Source:UniProtKB/TrEMBL;Acc:F7DGV5]
ENSCJAG00000003764	KNOWN_BY_PROJECTION	protein_coding	UBE3A	chromosome:C_jacchus3.2.1:6:1:158406734:1	1422743	1509020	R	ubiquitin protein ligase E3A [Source:HGNC Symbol;Acc:HGNC:12496]
ENSCJAG00000003824	NOVEL	protein_coding	ENSCJAG00000003824	chromosome:C_jacchus3.2.1:6:1:158406734:1	1660642	1842908	R	<no descrition>
ENSCJAG00000003855	NOVEL	protein_coding	ENSCJAG00000003855	chromosome:C_jacchus3.2.1:6:1:158406734:1	1873531	1945816	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007007}  [Source:UniProtKB/TrEMBL;Acc:F6Q5A9]
ENSCJAG00000003857	KNOWN_BY_PROJECTION	protein_coding	GABRB3	chromosome:C_jacchus3.2.1:6:1:158406734:1	2360407	2581920	R	gamma-aminobutyric acid (GABA) A receptor, beta 3 [Source:HGNC Symbol;Acc:HGNC:4083]
ENSCJAG00000001665	KNOWN	protein_coding	GABRA5	chromosome:C_jacchus3.2.1:6:1:158406734:1	2676517	2747308	D	Gamma-aminobutyric acid receptor subunit alpha-5 {ECO:0000313|EMBL:JAB19253.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000002968}  [Source:UniProtKB/TrEMBL;Acc:F7HUT3]
ENSCJAG00000009977	KNOWN	protein_coding	GABRG3	chromosome:C_jacchus3.2.1:6:1:158406734:1	2763944	3293636	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018321}  [Source:UniProtKB/TrEMBL;Acc:F7ER38]
ENSCJAG00000033010	NOVEL	protein_coding	ENSCJAG00000033010	chromosome:C_jacchus3.2.1:6:1:158406734:1	2817382	2822062	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051867}  [Source:UniProtKB/TrEMBL;Acc:F6VYJ0]
ENSCJAG00000009976	NOVEL	pseudogene	ENSCJAG00000009976	chromosome:C_jacchus3.2.1:6:1:158406734:1	2991942	2992344	R	<no descrition>
ENSCJAG00000011780	KNOWN_BY_PROJECTION	protein_coding	OCA2	chromosome:C_jacchus3.2.1:6:1:158406734:1	3483274	3751721	R	oculocutaneous albinism II [Source:HGNC Symbol;Acc:HGNC:8101]
ENSCJAG00000011798	KNOWN_BY_PROJECTION	protein_coding	HERC2	chromosome:C_jacchus3.2.1:6:1:158406734:1	3769965	3958795	R	HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:4868]
ENSCJAG00000017636	NOVEL	protein_coding	ENSCJAG00000017636	chromosome:C_jacchus3.2.1:6:1:158406734:1	4002800	4081937	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032508}  [Source:UniProtKB/TrEMBL;Acc:F7H1C9]
ENSCJAG00000017621	KNOWN_BY_PROJECTION	protein_coding	OTUD7A	chromosome:C_jacchus3.2.1:6:1:158406734:1	4192007	4485327	D	OTU deubiquitinase 7A [Source:HGNC Symbol;Acc:HGNC:20718]
ENSCJAG00000017617	KNOWN_BY_PROJECTION	protein_coding	KLF13	chromosome:C_jacchus3.2.1:6:1:158406734:1	4573854	4615437	R	Kruppel-like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]
ENSCJAG00000017565	KNOWN_BY_PROJECTION	protein_coding	TRPM1	chromosome:C_jacchus3.2.1:6:1:158406734:1	4813902	4932462	D	transient receptor potential cation channel, subfamily M, member 1 [Source:HGNC Symbol;Acc:HGNC:7146]
ENSCJAG00000017528	KNOWN_BY_PROJECTION	protein_coding	MTMR10	chromosome:C_jacchus3.2.1:6:1:158406734:1	4939324	4991281	D	myotubularin related protein 10 [Source:HGNC Symbol;Acc:HGNC:25999]
ENSCJAG00000017520	KNOWN	protein_coding	FAN1	chromosome:C_jacchus3.2.1:6:1:158406734:1	4990145	5034139	R	Fanconi-associated nuclease 1 isoform b {ECO:0000313|EMBL:JAB10572.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032277}  [Source:UniProtKB/TrEMBL;Acc:F7DKC8]
ENSCJAG00000017493	KNOWN_BY_PROJECTION	protein_coding	APBA2	chromosome:C_jacchus3.2.1:6:1:158406734:1	5247876	5303875	D	amyloid beta (A4) precursor protein-binding, family A, member 2 [Source:HGNC Symbol;Acc:HGNC:579]
ENSCJAG00000035491	KNOWN_BY_PROJECTION	protein_coding	FAM189A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	5310314	5324615	R	family with sequence similarity 189, member A1 [Source:HGNC Symbol;Acc:HGNC:29075]
ENSCJAG00000017492	NOVEL	protein_coding	ENSCJAG00000017492	chromosome:C_jacchus3.2.1:6:1:158406734:1	5342802	5353037	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032209}  [Source:UniProtKB/TrEMBL;Acc:F7ET92]
ENSCJAG00000017486	NOVEL	pseudogene	ENSCJAG00000017486	chromosome:C_jacchus3.2.1:6:1:158406734:1	5447900	5449549	R	<no descrition>
ENSCJAG00000017484	NOVEL	protein_coding	ENSCJAG00000017484	chromosome:C_jacchus3.2.1:6:1:158406734:1	5647231	5647677	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000032197}  [Source:UniProtKB/TrEMBL;Acc:F7FY73]
ENSCJAG00000017370	KNOWN_BY_PROJECTION	protein_coding	TJP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	5871689	5987079	R	tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]
ENSCJAG00000017350	KNOWN_BY_PROJECTION	protein_coding	TARSL2	chromosome:C_jacchus3.2.1:6:1:158406734:1	6209211	6269180	D	threonyl-tRNA synthetase-like 2 [Source:HGNC Symbol;Acc:HGNC:24728]
ENSCJAG00000017340	KNOWN	protein_coding	TM2D3	chromosome:C_jacchus3.2.1:6:1:158406734:1	6271050	6282259	D	TM2 domain-containing protein 3 isoform a {ECO:0000313|EMBL:JAB07716.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031920}  [Source:UniProtKB/TrEMBL;Acc:F7I0G6]
ENSCJAG00000017309	KNOWN_BY_PROJECTION	protein_coding	PCSK6	chromosome:C_jacchus3.2.1:6:1:158406734:1	6477735	6627308	D	proprotein convertase subtilisin/kexin type 6 [Source:HGNC Symbol;Acc:HGNC:8569]
ENSCJAG00000017268	KNOWN	protein_coding	SNRPA1	chromosome:C_jacchus3.2.1:6:1:158406734:1	6638357	6651356	D	U2 small nuclear ribonucleoprotein A {ECO:0000313|EMBL:JAB04038.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031842}  [Source:UniProtKB/TrEMBL;Acc:F7IEQ5]
ENSCJAG00000017258	KNOWN	protein_coding	VIMP	chromosome:C_jacchus3.2.1:6:1:158406734:1	6655080	6661849	D	Callithrix jacchus selenoprotein S (SELS), mRNA. [Source:RefSeq mRNA;Acc:NM_001199926]
ENSCJAG00000017247	KNOWN	protein_coding	CHSY1	chromosome:C_jacchus3.2.1:6:1:158406734:1	6683852	6757987	D	Chondroitin sulfate synthase 1 {ECO:0000313|EMBL:JAB02572.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031734}  [Source:UniProtKB/TrEMBL;Acc:F7HY89]
ENSCJAG00000017202	KNOWN	protein_coding	LRRK1	chromosome:C_jacchus3.2.1:6:1:158406734:1	6880154	7025501	R	Leucine-rich repeat serine/threonine-protein kinase 1 {ECO:0000313|EMBL:JAB17915.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031724}  [Source:UniProtKB/TrEMBL;Acc:F7HYD1]
ENSCJAG00000017159	KNOWN_BY_PROJECTION	protein_coding	ALDH1A3	chromosome:C_jacchus3.2.1:6:1:158406734:1	7029814	7067346	R	aldehyde dehydrogenase 1 family, member A3 [Source:HGNC Symbol;Acc:HGNC:409]
ENSCJAG00000017150	KNOWN	protein_coding	ASB7	chromosome:C_jacchus3.2.1:6:1:158406734:1	7297221	7344967	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031525}  [Source:UniProtKB/TrEMBL;Acc:F7HYI4]
ENSCJAG00000017135	KNOWN	protein_coding	LINS	chromosome:C_jacchus3.2.1:6:1:158406734:1	7345364	7379973	D	Protein Lines homolog {ECO:0000313|EMBL:JAB11922.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031506}  [Source:UniProtKB/TrEMBL;Acc:F7I0V9]
ENSCJAG00000017114	KNOWN_BY_PROJECTION	protein_coding	CERS3	chromosome:C_jacchus3.2.1:6:1:158406734:1	7398493	7502405	D	ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
ENSCJAG00000017094	KNOWN_BY_PROJECTION	protein_coding	ADAMTS17	chromosome:C_jacchus3.2.1:6:1:158406734:1	7553853	7885073	D	ADAM metallopeptidase with thrombospondin type 1 motif, 17 [Source:HGNC Symbol;Acc:HGNC:17109]
ENSCJAG00000017092	KNOWN_BY_PROJECTION	protein_coding	LYSMD4	chromosome:C_jacchus3.2.1:6:1:158406734:1	7947942	7952538	D	LysM, putative peptidoglycan-binding, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26571]
ENSCJAG00000017089	NOVEL	pseudogene	ENSCJAG00000017089	chromosome:C_jacchus3.2.1:6:1:158406734:1	7964662	7965053	D	<no descrition>
ENSCJAG00000017029	KNOWN	protein_coding	MEF2A	chromosome:C_jacchus3.2.1:6:1:158406734:1	7965033	8110031	R	Myocyte-specific enhancer factor 2A isoform 2 {ECO:0000313|EMBL:JAB17936.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031381}  [Source:UniProtKB/TrEMBL;Acc:F7IRR6]
ENSCJAG00000016965	KNOWN	protein_coding	LRRC28	chromosome:C_jacchus3.2.1:6:1:158406734:1	8279454	8402097	R	Leucine-rich repeat-containing protein 28 {ECO:0000313|EMBL:JAB06359.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031282}  [Source:UniProtKB/TrEMBL;Acc:F7IAE3]
ENSCJAG00000017019	NOVEL	protein_coding	ENSCJAG00000017019	chromosome:C_jacchus3.2.1:6:1:158406734:1	8376762	8377824	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031291}  [Source:UniProtKB/TrEMBL;Acc:F7I839]
ENSCJAG00000016950	KNOWN	protein_coding	TTC23	chromosome:C_jacchus3.2.1:6:1:158406734:1	8403753	8622987	D	Tetratricopeptide repeat protein 23 {ECO:0000313|EMBL:JAB08139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031194}  [Source:UniProtKB/TrEMBL;Acc:F7IJW2]
ENSCJAG00000016926	KNOWN	protein_coding	SYNM	chromosome:C_jacchus3.2.1:6:1:158406734:1	8515503	8543708	R	Synemin isoform A {ECO:0000313|EMBL:JAB11489.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000031152}  [Source:UniProtKB/TrEMBL;Acc:F7IPI2]
ENSCJAG00000016895	KNOWN_BY_PROJECTION	protein_coding	IGF1R	chromosome:C_jacchus3.2.1:6:1:158406734:1	8994418	9058313	D	insulin-like growth factor 1 receptor [Source:HGNC Symbol;Acc:HGNC:5465]
ENSCJAG00000016894	KNOWN_BY_PROJECTION	protein_coding	PGPEP1L	chromosome:C_jacchus3.2.1:6:1:158406734:1	9070794	9074302	R	pyroglutamyl-peptidase I-like [Source:HGNC Symbol;Acc:HGNC:27080]
ENSCJAG00000016887	KNOWN_BY_PROJECTION	protein_coding	FAM169B	chromosome:C_jacchus3.2.1:6:1:158406734:1	9189603	9240969	D	family with sequence similarity 169, member B [Source:HGNC Symbol;Acc:HGNC:26835]
ENSCJAG00000014759	KNOWN_BY_PROJECTION	protein_coding	OR4F15	chromosome:C_jacchus3.2.1:6:1:158406734:1	9606998	9608715	R	olfactory receptor, family 4, subfamily F, member 15 [Source:HGNC Symbol;Acc:HGNC:15078]
ENSCJAG00000016533	KNOWN_BY_PROJECTION	protein_coding	ARRDC4	chromosome:C_jacchus3.2.1:6:1:158406734:1	9638326	9686975	R	arrestin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28087]
ENSCJAG00000005946	KNOWN	protein_coding	NR2F2	chromosome:C_jacchus3.2.1:6:1:158406734:1	11038437	11053267	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010946}  [Source:UniProtKB/TrEMBL;Acc:F7IFE1]
ENSCJAG00000005974	NOVEL	pseudogene	ENSCJAG00000005974	chromosome:C_jacchus3.2.1:6:1:158406734:1	11094105	11094480	D	<no descrition>
ENSCJAG00000005975	KNOWN_BY_PROJECTION	protein_coding	MCTP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	12811331	13077293	R	multiple C2 domains, transmembrane 2 [Source:HGNC Symbol;Acc:HGNC:25636]
ENSCJAG00000006029	NOVEL	protein_coding	ENSCJAG00000006029	chromosome:C_jacchus3.2.1:6:1:158406734:1	13207056	13227382	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011126}  [Source:UniProtKB/TrEMBL;Acc:F7I486]
ENSCJAG00000020455	NOVEL	pseudogene	ENSCJAG00000020455	chromosome:C_jacchus3.2.1:6:1:158406734:1	13812477	13813640	R	<no descrition>
ENSCJAG00000023263	NOVEL	pseudogene	ENSCJAG00000023263	chromosome:C_jacchus3.2.1:6:1:158406734:1	14203637	14204599	D	<no descrition>
ENSCJAG00000020452	KNOWN	protein_coding	RGMA	chromosome:C_jacchus3.2.1:6:1:158406734:1	14377651	14428169	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038008}  [Source:UniProtKB/TrEMBL;Acc:F7HXW8]
ENSCJAG00000035384	NOVEL	protein_coding	ENSCJAG00000035384	chromosome:C_jacchus3.2.1:6:1:158406734:1	14465451	14493102	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038003}  [Source:UniProtKB/TrEMBL;Acc:F7HXX7]
ENSCJAG00000020444	NOVEL	protein_coding	ENSCJAG00000020444	chromosome:C_jacchus3.2.1:6:1:158406734:1	14500782	14585885	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038001}  [Source:UniProtKB/TrEMBL;Acc:F7HXY1]
ENSCJAG00000020443	NOVEL	protein_coding	ENSCJAG00000020443	chromosome:C_jacchus3.2.1:6:1:158406734:1	14711435	14712098	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7BVP8]
ENSCJAG00000020440	NOVEL	pseudogene	ENSCJAG00000020440	chromosome:C_jacchus3.2.1:6:1:158406734:1	14744106	14744334	R	<no descrition>
ENSCJAG00000020438	NOVEL	pseudogene	ENSCJAG00000020438	chromosome:C_jacchus3.2.1:6:1:158406734:1	14766512	14767486	D	<no descrition>
ENSCJAG00000020435	KNOWN_BY_PROJECTION	protein_coding	FAM174B	chromosome:C_jacchus3.2.1:6:1:158406734:1	14801192	14843897	D	family with sequence similarity 174, member B [Source:HGNC Symbol;Acc:HGNC:34339]
ENSCJAG00000020434	NOVEL	protein_coding	ENSCJAG00000020434	chromosome:C_jacchus3.2.1:6:1:158406734:1	14939321	14965510	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000037971}  [Source:UniProtKB/TrEMBL;Acc:F7CAA1]
ENSCJAG00000020433	KNOWN_BY_PROJECTION	protein_coding	ST8SIA2	chromosome:C_jacchus3.2.1:6:1:158406734:1	14973200	15008087	R	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10870]
ENSCJAG00000020426	KNOWN	protein_coding	SLCO3A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	15271250	15613286	R	Solute carrier organic anion transporter family member 3A1 isoform 1 {ECO:0000313|EMBL:JAB19025.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043608}  [Source:UniProtKB/TrEMBL;Acc:F7IEX0]
ENSCJAG00000019298	KNOWN_BY_PROJECTION	protein_coding	SV2B	chromosome:C_jacchus3.2.1:6:1:158406734:1	16142172	16340918	R	synaptic vesicle glycoprotein 2B [Source:HGNC Symbol;Acc:HGNC:16874]
ENSCJAG00000009435	KNOWN	protein_coding	ZNF710	chromosome:C_jacchus3.2.1:6:1:158406734:1	16440867	16455754	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017272}; Zinc finger protein 710 {ECO:0000313|EMBL:JAB03379.1}  [Source:UniProtKB/TrEMBL;Acc:F7HLL8]
ENSCJAG00000009440	KNOWN	protein_coding	IDH2	chromosome:C_jacchus3.2.1:6:1:158406734:1	16459629	16473417	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017353}  [Source:UniProtKB/TrEMBL;Acc:F7ICG2]
ENSCJAG00000009482	KNOWN_BY_PROJECTION	protein_coding	SEMA4B	chromosome:C_jacchus3.2.1:6:1:158406734:1	16519264	16568453	D	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
ENSCJAG00000009505	KNOWN	protein_coding	CIB1	chromosome:C_jacchus3.2.1:6:1:158406734:1	16569529	16571352	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017416}  [Source:UniProtKB/TrEMBL;Acc:F7I0P8]
ENSCJAG00000009511	KNOWN	protein_coding	GDPGP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	16578274	16581132	D	GDP-D-glucose phosphorylase 1 {ECO:0000313|EMBL:JAB04034.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017418}  [Source:UniProtKB/TrEMBL;Acc:F7I0P7]
ENSCJAG00000009514	NOVEL	protein_coding	ENSCJAG00000009514	chromosome:C_jacchus3.2.1:6:1:158406734:1	16586540	16603162	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017432}  [Source:UniProtKB/TrEMBL;Acc:F7HYC9]
ENSCJAG00000009520	KNOWN	protein_coding	NGRN	chromosome:C_jacchus3.2.1:6:1:158406734:1	16603858	16612707	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017439}  [Source:UniProtKB/TrEMBL;Acc:F7HYB7]
ENSCJAG00000009526	KNOWN	protein_coding	VPS33B	chromosome:C_jacchus3.2.1:6:1:158406734:1	16635347	16664213	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050174}; Vacuolar protein sorting-associated protein 33B {ECO:0000313|EMBL:JAB01910.1}  [Source:UniProtKB/TrEMBL;Acc:F7H464]
ENSCJAG00000009561	KNOWN	protein_coding	PRC1	chromosome:C_jacchus3.2.1:6:1:158406734:1	16670442	16697644	D	Protein regulator of cytokinesis 1 isoform 1 {ECO:0000313|EMBL:JAB49539.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017553}  [Source:UniProtKB/TrEMBL;Acc:F7IEP8]
ENSCJAG00000009598	NOVEL	protein_coding	ENSCJAG00000009598	chromosome:C_jacchus3.2.1:6:1:158406734:1	16703465	16709665	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017577}  [Source:UniProtKB/TrEMBL;Acc:F7IA14]
ENSCJAG00000009605	KNOWN_BY_PROJECTION	protein_coding	UNC45A	chromosome:C_jacchus3.2.1:6:1:158406734:1	16712199	16732548	R	unc-45 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:30594]
ENSCJAG00000009674	KNOWN_BY_PROJECTION	protein_coding	HDDC3	chromosome:C_jacchus3.2.1:6:1:158406734:1	16734866	16735699	D	HD domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30522]
ENSCJAG00000009678	KNOWN	protein_coding	MAN2A2	chromosome:C_jacchus3.2.1:6:1:158406734:1	16740253	16760853	R	Alpha-mannosidase 2x {ECO:0000313|EMBL:JAB11062.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042264}  [Source:UniProtKB/TrEMBL;Acc:F7A987]
ENSCJAG00000009738	KNOWN	protein_coding	FES	chromosome:C_jacchus3.2.1:6:1:158406734:1	16764611	16777813	R	Tyrosine-protein kinase {ECO:0000256|PIRNR:PIRNR000632}  [Source:UniProtKB/TrEMBL;Acc:F7IBY8]
ENSCJAG00000009790	KNOWN	protein_coding	FURIN	chromosome:C_jacchus3.2.1:6:1:158406734:1	16780271	16786345	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043117}  [Source:UniProtKB/TrEMBL;Acc:F7IPK4]
ENSCJAG00000009803	KNOWN_BY_PROJECTION	protein_coding	BLM	chromosome:C_jacchus3.2.1:6:1:158406734:1	16841400	16963446	R	Bloom syndrome, RecQ helicase-like [Source:HGNC Symbol;Acc:HGNC:1058]
ENSCJAG00000009879	NOVEL	protein_coding	ENSCJAG00000009879	chromosome:C_jacchus3.2.1:6:1:158406734:1	16904237	16905072	D	Stathmin {ECO:0000256|RuleBase:RU004388}  [Source:UniProtKB/TrEMBL;Acc:F7EDZ9]
ENSCJAG00000009887	NOVEL	pseudogene	ENSCJAG00000009887	chromosome:C_jacchus3.2.1:6:1:158406734:1	16978681	16979140	R	<no descrition>
ENSCJAG00000009892	KNOWN	protein_coding	CRTC3	chromosome:C_jacchus3.2.1:6:1:158406734:1	17021465	17138468	R	CREB-regulated transcription coactivator 3 isoform a {ECO:0000313|EMBL:JAB08224.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018167}  [Source:UniProtKB/TrEMBL;Acc:F7D1B5]
ENSCJAG00000009910	KNOWN_BY_PROJECTION	protein_coding	IQGAP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	17167963	17287235	R	IQ motif containing GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:6110]
ENSCJAG00000007127	NOVEL	protein_coding	ENSCJAG00000007127	chromosome:C_jacchus3.2.1:6:1:158406734:1	17481844	17572241	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045323}  [Source:UniProtKB/TrEMBL;Acc:F6THE8]
ENSCJAG00000007096	KNOWN	protein_coding	ANPEP	chromosome:C_jacchus3.2.1:6:1:158406734:1	17586727	17771976	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013204}  [Source:UniProtKB/TrEMBL;Acc:F6ZHR3]
ENSCJAG00000007092	KNOWN_BY_PROJECTION	protein_coding	MESP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	17619425	17621983	R	mesoderm posterior basic helix-loop-helix transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:29659]
ENSCJAG00000007088	NOVEL	pseudogene	ENSCJAG00000007088	chromosome:C_jacchus3.2.1:6:1:158406734:1	17649627	17650083	D	<no descrition>
ENSCJAG00000012691	KNOWN_BY_PROJECTION	protein_coding	WDR93	chromosome:C_jacchus3.2.1:6:1:158406734:1	17658836	17711494	R	WD repeat domain 93 [Source:HGNC Symbol;Acc:HGNC:26924]
ENSCJAG00000012706	KNOWN	protein_coding	PEX11A	chromosome:C_jacchus3.2.1:6:1:158406734:1	17711518	17720047	D	Peroxisomal membrane protein 11A isoform 1 {ECO:0000313|EMBL:JAB39682.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023273}  [Source:UniProtKB/TrEMBL;Acc:F7IIB8]
ENSCJAG00000012709	KNOWN_BY_PROJECTION	protein_coding	PLIN1	chromosome:C_jacchus3.2.1:6:1:158406734:1	17725202	17740094	D	perilipin 1 [Source:HGNC Symbol;Acc:HGNC:9076]
ENSCJAG00000012723	KNOWN_BY_PROJECTION	protein_coding	KIF7	chromosome:C_jacchus3.2.1:6:1:158406734:1	17748384	17770681	D	kinesin family member 7 [Source:HGNC Symbol;Acc:HGNC:30497]
ENSCJAG00000012742	KNOWN_BY_PROJECTION	protein_coding	TICRR	chromosome:C_jacchus3.2.1:6:1:158406734:1	17772083	17806559	R	TOPBP1-interacting checkpoint and replication regulator [Source:HGNC Symbol;Acc:HGNC:28704]
ENSCJAG00000012754	KNOWN_BY_PROJECTION	protein_coding	RHCG	chromosome:C_jacchus3.2.1:6:1:158406734:1	17874968	17902397	D	Rh family, C glycoprotein [Source:HGNC Symbol;Acc:HGNC:18140]
ENSCJAG00000012773	KNOWN	protein_coding	POLG	chromosome:C_jacchus3.2.1:6:1:158406734:1	18077672	18097117	D	DNA polymerase subunit gamma-1 {ECO:0000313|EMBL:JAB11800.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023461}  [Source:UniProtKB/TrEMBL;Acc:F7IMR4]
ENSCJAG00000012809	KNOWN_BY_PROJECTION	protein_coding	FANCI	chromosome:C_jacchus3.2.1:6:1:158406734:1	18096477	18178925	R	Fanconi anemia, complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]
ENSCJAG00000012881	KNOWN_BY_PROJECTION	protein_coding	RLBP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	18198331	18207484	D	retinaldehyde binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10024]
ENSCJAG00000012895	KNOWN	protein_coding	ABHD2	chromosome:C_jacchus3.2.1:6:1:158406734:1	18219474	18316798	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023693}  [Source:UniProtKB/TrEMBL;Acc:F7GXC6]
ENSCJAG00000012935	NOVEL	protein_coding	ENSCJAG00000012935	chromosome:C_jacchus3.2.1:6:1:158406734:1	18348029	18351367	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023698}  [Source:UniProtKB/TrEMBL;Acc:F7GXB7]
ENSCJAG00000012940	KNOWN	protein_coding	MFGE8	chromosome:C_jacchus3.2.1:6:1:158406734:1	18499096	18512195	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023709}  [Source:UniProtKB/TrEMBL;Acc:F7GLX8]
ENSCJAG00000012941	KNOWN_BY_PROJECTION	protein_coding	HAPLN3	chromosome:C_jacchus3.2.1:6:1:158406734:1	18530134	18534524	D	hyaluronan and proteoglycan link protein 3 [Source:HGNC Symbol;Acc:HGNC:21446]
ENSCJAG00000012944	KNOWN_BY_PROJECTION	protein_coding	ACAN	chromosome:C_jacchus3.2.1:6:1:158406734:1	18537412	18609803	R	aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
ENSCJAG00000034923	KNOWN	protein_coding	ISG20	chromosome:C_jacchus3.2.1:6:1:158406734:1	18741468	18760093	R	Interferon-stimulated gene 20 kDa protein {ECO:0000313|EMBL:JAB06365.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023834}  [Source:UniProtKB/TrEMBL;Acc:F7HI33]
ENSCJAG00000012988	KNOWN_BY_PROJECTION	protein_coding	AEN	chromosome:C_jacchus3.2.1:6:1:158406734:1	18767577	18773383	R	apoptosis enhancing nuclease [Source:HGNC Symbol;Acc:HGNC:25722]
ENSCJAG00000012995	NOVEL	pseudogene	ENSCJAG00000012995	chromosome:C_jacchus3.2.1:6:1:158406734:1	18815413	18815989	D	<no descrition>
ENSCJAG00000012996	KNOWN_BY_PROJECTION	protein_coding	DET1	chromosome:C_jacchus3.2.1:6:1:158406734:1	18825551	18868710	D	de-etiolated homolog 1 (Arabidopsis) [Source:HGNC Symbol;Acc:HGNC:25477]
ENSCJAG00000013005	NOVEL	pseudogene	ENSCJAG00000013005	chromosome:C_jacchus3.2.1:6:1:158406734:1	18841065	18842155	R	<no descrition>
ENSCJAG00000013008	NOVEL	pseudogene	ENSCJAG00000013008	chromosome:C_jacchus3.2.1:6:1:158406734:1	18844620	18845855	D	<no descrition>
ENSCJAG00000013009	NOVEL	protein_coding	ENSCJAG00000013009	chromosome:C_jacchus3.2.1:6:1:158406734:1	18853573	18856446	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013960}  [Source:UniProtKB/TrEMBL;Acc:F6VWY2]
ENSCJAG00000013012	KNOWN	protein_coding	MRPS11	chromosome:C_jacchus3.2.1:6:1:158406734:1	18901628	18910485	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023886}  [Source:UniProtKB/TrEMBL;Acc:F7GX90]
ENSCJAG00000013019	KNOWN_BY_PROJECTION	protein_coding	MRPL46	chromosome:C_jacchus3.2.1:6:1:158406734:1	18910823	18918777	D	mitochondrial ribosomal protein L46 [Source:HGNC Symbol;Acc:HGNC:1192]
ENSCJAG00000013026	KNOWN	protein_coding	NTRK3	chromosome:C_jacchus3.2.1:6:1:158406734:1	19118965	19511893	D	Tyrosine-protein kinase receptor {ECO:0000256|RuleBase:RU000312}  [Source:UniProtKB/TrEMBL;Acc:F7E6U4]
ENSCJAG00000013141	NOVEL	pseudogene	ENSCJAG00000013141	chromosome:C_jacchus3.2.1:6:1:158406734:1	20623650	20625718	D	<no descrition>
ENSCJAG00000013146	KNOWN_BY_PROJECTION	protein_coding	AGBL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	20630913	21131823	R	ATP/GTP binding protein-like 1 [Source:HGNC Symbol;Acc:HGNC:26504]
ENSCJAG00000035816	NOVEL	protein_coding	ENSCJAG00000035816	chromosome:C_jacchus3.2.1:6:1:158406734:1	21120838	21131839	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024141}  [Source:UniProtKB/TrEMBL;Acc:F7DA83]
ENSCJAG00000021976	KNOWN	protein_coding	KLHL25	chromosome:C_jacchus3.2.1:6:1:158406734:1	21434802	21446601	D	Ectoderm-neural cortex protein 2 {ECO:0000313|EMBL:JAB15236.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044670}  [Source:UniProtKB/TrEMBL;Acc:F7HBP4]
ENSCJAG00000009388	KNOWN_BY_PROJECTION	protein_coding	AKAP13	chromosome:C_jacchus3.2.1:6:1:158406734:1	21459140	21788444	R	A kinase (PRKA) anchor protein 13 [Source:HGNC Symbol;Acc:HGNC:371]
ENSCJAG00000008837	NOVEL	pseudogene	ENSCJAG00000008837	chromosome:C_jacchus3.2.1:6:1:158406734:1	21760837	21761347	D	<no descrition>
ENSCJAG00000016215	KNOWN_BY_PROJECTION	protein_coding	SLC28A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	21852229	21911522	R	solute carrier family 28 (concentrative nucleoside transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11001]
ENSCJAG00000016211	NOVEL	protein_coding	ENSCJAG00000016211	chromosome:C_jacchus3.2.1:6:1:158406734:1	21927522	21961098	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029849}  [Source:UniProtKB/TrEMBL;Acc:F7IRA8]
ENSCJAG00000037135	NOVEL	protein_coding	ENSCJAG00000037135	chromosome:C_jacchus3.2.1:6:1:158406734:1	21959968	21977386	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042790}  [Source:UniProtKB/TrEMBL;Acc:F6UGB7]
ENSCJAG00000016173	KNOWN	protein_coding	ZNF592	chromosome:C_jacchus3.2.1:6:1:158406734:1	22000602	22021210	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029840}; Zinc finger protein 592 {ECO:0000313|EMBL:JAB03933.1}  [Source:UniProtKB/TrEMBL;Acc:F7IRB5]
ENSCJAG00000016146	KNOWN	protein_coding	SEC11A	chromosome:C_jacchus3.2.1:6:1:158406734:1	22089690	22135167	D	Signal peptidase complex catalytic subunit SEC11A isoform 2 {ECO:0000313|EMBL:JAB06854.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029758}  [Source:UniProtKB/TrEMBL;Acc:F7I7E7]
ENSCJAG00000016048	KNOWN	protein_coding	CPEB1	chromosome:C_jacchus3.2.1:6:1:158406734:1	22121532	22346268	R	Cytoplasmic polyadenylation element-binding protein 1 isoform 1 {ECO:0000313|EMBL:JAB11074.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029626}  [Source:UniProtKB/TrEMBL;Acc:F7HVV0]
ENSCJAG00000016140	KNOWN_BY_PROJECTION	protein_coding	NMB	chromosome:C_jacchus3.2.1:6:1:158406734:1	22143555	22147276	D	neuromedin B [Source:HGNC Symbol;Acc:HGNC:7842]
ENSCJAG00000016128	KNOWN_BY_PROJECTION	protein_coding	WDR73	chromosome:C_jacchus3.2.1:6:1:158406734:1	22148102	22161456	D	WD repeat domain 73 [Source:HGNC Symbol;Acc:HGNC:25928]
ENSCJAG00000016119	KNOWN_BY_PROJECTION	protein_coding	ZSCAN2	chromosome:C_jacchus3.2.1:6:1:158406734:1	22191867	22215091	R	zinc finger and SCAN domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20994]
ENSCJAG00000016113	NOVEL	protein_coding	ENSCJAG00000016113	chromosome:C_jacchus3.2.1:6:1:158406734:1	22228384	22232396	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029658}  [Source:UniProtKB/TrEMBL;Acc:F7HKW4]
ENSCJAG00000016104	NOVEL	protein_coding	ENSCJAG00000016104	chromosome:C_jacchus3.2.1:6:1:158406734:1	22310481	22311337	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029644}  [Source:UniProtKB/TrEMBL;Acc:F7HRK6]
ENSCJAG00000015979	KNOWN	protein_coding	AP3B2	chromosome:C_jacchus3.2.1:6:1:158406734:1	22356764	22396798	R	AP-3 complex subunit beta-2 {ECO:0000313|EMBL:JAB13802.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029514}  [Source:UniProtKB/TrEMBL;Acc:F7IH39]
ENSCJAG00000035172	NOVEL	pseudogene	ENSCJAG00000035172	chromosome:C_jacchus3.2.1:6:1:158406734:1	22408783	22409717	R	<no descrition>
ENSCJAG00000015939	KNOWN_BY_PROJECTION	protein_coding	FSD2	chromosome:C_jacchus3.2.1:6:1:158406734:1	22434278	22484707	R	fibronectin type III and SPRY domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18024]
ENSCJAG00000015975	NOVEL	pseudogene	ENSCJAG00000015975	chromosome:C_jacchus3.2.1:6:1:158406734:1	22467812	22469415	D	<no descrition>
ENSCJAG00000015916	KNOWN_BY_PROJECTION	protein_coding	WHAMM	chromosome:C_jacchus3.2.1:6:1:158406734:1	22490064	22515762	D	WAS protein homolog associated with actin, golgi membranes and microtubules [Source:HGNC Symbol;Acc:HGNC:30493]
ENSCJAG00000015884	KNOWN	protein_coding	HOMER2	chromosome:C_jacchus3.2.1:6:1:158406734:1	22530210	22637984	R	Homer protein homolog 2 isoform 2 {ECO:0000313|EMBL:JAB05846.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029295}  [Source:UniProtKB/TrEMBL;Acc:F7ILZ2]
ENSCJAG00000015877	KNOWN	protein_coding	C15ORF40	chromosome:C_jacchus3.2.1:6:1:158406734:1	22677314	22700114	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003668}  [Source:UniProtKB/TrEMBL;Acc:F7GZJ0]
ENSCJAG00000015882	KNOWN	protein_coding	ENSCJAG00000015882	chromosome:C_jacchus3.2.1:6:1:158406734:1	22677350	22678676	D	RNMT-activating mini protein {ECO:0000313|EMBL:JAB09409.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029235}  [Source:UniProtKB/TrEMBL;Acc:F7HSF0]
ENSCJAG00000015841	KNOWN	protein_coding	BTBD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	22705447	22765880	R	BTB/POZ domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB08004.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029225}  [Source:UniProtKB/TrEMBL;Acc:F7HW47]
ENSCJAG00000015800	KNOWN_BY_PROJECTION	protein_coding	TM6SF1	chromosome:C_jacchus3.2.1:6:1:158406734:1	22800549	22831592	D	transmembrane 6 superfamily member 1 [Source:HGNC Symbol;Acc:HGNC:11860]
ENSCJAG00000015775	KNOWN	protein_coding	HDGFRP3	chromosome:C_jacchus3.2.1:6:1:158406734:1	22832379	22912164	R	Hepatoma-derived growth factor-related protein 3 {ECO:0000313|EMBL:JAB18186.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029081}  [Source:UniProtKB/TrEMBL;Acc:F7IPD3]
ENSCJAG00000015761	KNOWN_BY_PROJECTION	protein_coding	BNC1	chromosome:C_jacchus3.2.1:6:1:158406734:1	22962186	22990290	R	basonuclin 1 [Source:HGNC Symbol;Acc:HGNC:1081]
ENSCJAG00000015730	KNOWN	protein_coding	SH3GL3	chromosome:C_jacchus3.2.1:6:1:158406734:1	23135656	23288586	D	Endophilin-A3 {ECO:0000313|EMBL:JAB24732.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000029009}  [Source:UniProtKB/TrEMBL;Acc:F7HYN2]
ENSCJAG00000015699	KNOWN_BY_PROJECTION	protein_coding	ADAMTSL3	chromosome:C_jacchus3.2.1:6:1:158406734:1	23310032	23750801	D	ADAMTS-like 3 [Source:HGNC Symbol;Acc:HGNC:14633]
ENSCJAG00000015696	NOVEL	protein_coding	ENSCJAG00000015696	chromosome:C_jacchus3.2.1:6:1:158406734:1	23786611	23789594	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028883}  [Source:UniProtKB/TrEMBL;Acc:F6W579]
ENSCJAG00000015684	KNOWN_BY_PROJECTION	protein_coding	FAM154B	chromosome:C_jacchus3.2.1:6:1:158406734:1	23792922	23813740	R	family with sequence similarity 154, member B [Source:HGNC Symbol;Acc:HGNC:33727]
ENSCJAG00000015607	KNOWN	protein_coding	EFTUD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	23813828	23936387	D	Elongation factor Tu GTP-binding domain-containing protein 1 isoform 1 {ECO:0000313|EMBL:JAB49601.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028862}  [Source:UniProtKB/TrEMBL;Acc:F6W5W8]
ENSCJAG00000008043	KNOWN_BY_PROJECTION	protein_coding	MEX3B	chromosome:C_jacchus3.2.1:6:1:158406734:1	24036844	24041418	D	mex-3 RNA binding family member B [Source:HGNC Symbol;Acc:HGNC:25297]
ENSCJAG00000031864	NOVEL	protein_coding	ENSCJAG00000031864	chromosome:C_jacchus3.2.1:6:1:158406734:1	24245132	24247195	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044237}  [Source:UniProtKB/TrEMBL;Acc:F7E0T0]
ENSCJAG00000007856	KNOWN_BY_PROJECTION	protein_coding	IL16	chromosome:C_jacchus3.2.1:6:1:158406734:1	24655014	24877697	R	interleukin 16 [Source:HGNC Symbol;Acc:HGNC:5980]
ENSCJAG00000033489	NOVEL	protein_coding	ENSCJAG00000033489	chromosome:C_jacchus3.2.1:6:1:158406734:1	24668795	24671285	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051896}  [Source:UniProtKB/TrEMBL;Acc:F6UTL1]
ENSCJAG00000007980	KNOWN_BY_PROJECTION	protein_coding	TMC3	chromosome:C_jacchus3.2.1:6:1:158406734:1	24726705	24769529	D	transmembrane channel-like 3 [Source:HGNC Symbol;Acc:HGNC:22995]
ENSCJAG00000008037	NOVEL	pseudogene	ENSCJAG00000008037	chromosome:C_jacchus3.2.1:6:1:158406734:1	24730859	24731996	R	<no descrition>
ENSCJAG00000007965	KNOWN	protein_coding	STARD5	chromosome:C_jacchus3.2.1:6:1:158406734:1	24774335	24789545	D	StAR-related lipid transfer protein 5 {ECO:0000313|EMBL:JAB09279.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014740}  [Source:UniProtKB/TrEMBL;Acc:F7IN76]
ENSCJAG00000007830	KNOWN	protein_coding	C15ORF26	chromosome:C_jacchus3.2.1:6:1:158406734:1	24952665	24966715	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014535}  [Source:UniProtKB/TrEMBL;Acc:F7IL02]
ENSCJAG00000007827	KNOWN_BY_PROJECTION	protein_coding	MESDC1	chromosome:C_jacchus3.2.1:6:1:158406734:1	25102112	25105742	R	mesoderm development candidate 1 [Source:HGNC Symbol;Acc:HGNC:13519]
ENSCJAG00000007811	KNOWN	protein_coding	MESDC2	chromosome:C_jacchus3.2.1:6:1:158406734:1	25119321	25158906	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014494}  [Source:UniProtKB/TrEMBL;Acc:F7IT68]
ENSCJAG00000007708	KNOWN_BY_PROJECTION	protein_coding	CEMIP	chromosome:C_jacchus3.2.1:6:1:158406734:1	25157287	25340544	R	cell migration inducing protein, hyaluronan binding [Source:HGNC Symbol;Acc:HGNC:29213]
ENSCJAG00000007705	KNOWN_BY_PROJECTION	protein_coding	ABHD17C	chromosome:C_jacchus3.2.1:6:1:158406734:1	25363090	25418963	R	abhydrolase domain containing 17C [Source:HGNC Symbol;Acc:HGNC:26925]
ENSCJAG00000007640	KNOWN_BY_PROJECTION	protein_coding	ARNT2	chromosome:C_jacchus3.2.1:6:1:158406734:1	25513476	25670753	R	aryl-hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
ENSCJAG00000007600	KNOWN	protein_coding	FAH	chromosome:C_jacchus3.2.1:6:1:158406734:1	25860839	25897182	R	Fumarylacetoacetase {ECO:0000313|EMBL:JAB17397.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014148}  [Source:UniProtKB/TrEMBL;Acc:F7IEA9]
ENSCJAG00000007572	KNOWN	protein_coding	ZFAND6	chromosome:C_jacchus3.2.1:6:1:158406734:1	25908355	25952480	R	AN1-type zinc finger protein 6 isoform a {ECO:0000313|EMBL:JAB06305.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014093}  [Source:UniProtKB/TrEMBL;Acc:F7HKB3]
ENSCJAG00000007569	KNOWN_BY_PROJECTION	protein_coding	BCL2A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	26038865	26050095	D	BCL2-related protein A1 [Source:HGNC Symbol;Acc:HGNC:991]
ENSCJAG00000007560	KNOWN	protein_coding	MTHFS	chromosome:C_jacchus3.2.1:6:1:158406734:1	26072639	26111466	D	5-formyltetrahydrofolate cyclo-ligase isoform a {ECO:0000313|EMBL:JAB04157.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014048}  [Source:UniProtKB/TrEMBL;Acc:F7I072]
ENSCJAG00000007557	NOVEL	protein_coding	ENSCJAG00000007557	chromosome:C_jacchus3.2.1:6:1:158406734:1	26340135	26341748	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000017425}  [Source:UniProtKB/TrEMBL;Acc:F7I0M8]
ENSCJAG00000007551	KNOWN_BY_PROJECTION	protein_coding	KIAA1024	chromosome:C_jacchus3.2.1:6:1:158406734:1	26482181	26490057	R	KIAA1024 [Source:HGNC Symbol;Acc:HGNC:29172]
ENSCJAG00000007547	NOVEL	pseudogene	ENSCJAG00000007547	chromosome:C_jacchus3.2.1:6:1:158406734:1	26557821	26558454	D	<no descrition>
ENSCJAG00000005277	KNOWN	protein_coding	TMED3	chromosome:C_jacchus3.2.1:6:1:158406734:1	26722466	26733872	R	Transmembrane emp24 domain-containing protein 3 {ECO:0000313|EMBL:JAB05837.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009657}  [Source:UniProtKB/TrEMBL;Acc:F7FL73]
ENSCJAG00000005284	NOVEL	pseudogene	ENSCJAG00000005284	chromosome:C_jacchus3.2.1:6:1:158406734:1	26750655	26752235	R	<no descrition>
ENSCJAG00000034603	NOVEL	protein_coding	ENSCJAG00000034603	chromosome:C_jacchus3.2.1:6:1:158406734:1	27997854	27999596	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044911}  [Source:UniProtKB/TrEMBL;Acc:F7GVK0]
ENSCJAG00000004649	NOVEL	protein_coding	ENSCJAG00000004649	chromosome:C_jacchus3.2.1:6:1:158406734:1	28103022	28111053	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008430}  [Source:UniProtKB/TrEMBL;Acc:F7IFG4]
ENSCJAG00000033628	NOVEL	protein_coding	ENSCJAG00000033628	chromosome:C_jacchus3.2.1:6:1:158406734:1	28237505	28238007	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042655}  [Source:UniProtKB/TrEMBL;Acc:F6ZP45]
ENSCJAG00000004631	KNOWN	protein_coding	CCDC115	chromosome:C_jacchus3.2.1:6:1:158406734:1	28475995	28480199	R	Coiled-coil domain-containing protein 115 {ECO:0000313|EMBL:JAB11240.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008395}  [Source:UniProtKB/TrEMBL;Acc:F7IPU7]
ENSCJAG00000004623	KNOWN	protein_coding	IMP4	chromosome:C_jacchus3.2.1:6:1:158406734:1	28482459	28484301	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008375}  [Source:UniProtKB/TrEMBL;Acc:F7IS91]
ENSCJAG00000004585	KNOWN	protein_coding	PTPN18	chromosome:C_jacchus3.2.1:6:1:158406734:1	28498015	28517100	D	Tyrosine-protein phosphatase non-receptor type 18 isoform 1 {ECO:0000313|EMBL:JAB06504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008353}  [Source:UniProtKB/TrEMBL;Acc:F7HTP2]
ENSCJAG00000011112	NOVEL	protein_coding	ENSCJAG00000011112	chromosome:C_jacchus3.2.1:6:1:158406734:1	28560774	28566537	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020502}  [Source:UniProtKB/TrEMBL;Acc:F7H6L6]
ENSCJAG00000011103	KNOWN	protein_coding	AMER3	chromosome:C_jacchus3.2.1:6:1:158406734:1	28590106	28647932	D	APC membrane recruitment protein 3 {ECO:0000313|EMBL:JAB14307.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020473}  [Source:UniProtKB/TrEMBL;Acc:F7DJ18]
ENSCJAG00000011108	NOVEL	pseudogene	ENSCJAG00000011108	chromosome:C_jacchus3.2.1:6:1:158406734:1	28601006	28602188	D	<no descrition>
ENSCJAG00000011046	NOVEL	protein_coding	ENSCJAG00000011046	chromosome:C_jacchus3.2.1:6:1:158406734:1	28786740	28921603	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020466}  [Source:UniProtKB/TrEMBL;Acc:F7DJS1]
ENSCJAG00000011038	KNOWN	protein_coding	FAM168B	chromosome:C_jacchus3.2.1:6:1:158406734:1	28926564	28961921	R	Myelin-associated neurite-outgrowth inhibitor {ECO:0000313|EMBL:JAB04412.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020365}  [Source:UniProtKB/TrEMBL;Acc:F7GKM9]
ENSCJAG00000019664	NOVEL	pseudogene	ENSCJAG00000019664	chromosome:C_jacchus3.2.1:6:1:158406734:1	28944474	28945315	D	<no descrition>
ENSCJAG00000011033	KNOWN	protein_coding	PLEKHB2	chromosome:C_jacchus3.2.1:6:1:158406734:1	28987146	29040388	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000003658}  [Source:UniProtKB/TrEMBL;Acc:F7H4J8]
ENSCJAG00000011010	KNOWN_BY_PROJECTION	protein_coding	HS6ST1	chromosome:C_jacchus3.2.1:6:1:158406734:1	30891600	30941975	D	heparan sulfate 6-O-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5201]
ENSCJAG00000031348	NOVEL	protein_coding	ENSCJAG00000031348	chromosome:C_jacchus3.2.1:6:1:158406734:1	30999852	31000554	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052187}  [Source:UniProtKB/TrEMBL;Acc:F7HXZ1]
ENSCJAG00000010861	KNOWN	protein_coding	UGGT1	chromosome:C_jacchus3.2.1:6:1:158406734:1	31021188	31137110	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020310}  [Source:UniProtKB/TrEMBL;Acc:F7H6Y8]
ENSCJAG00000010759	KNOWN_BY_PROJECTION	protein_coding	SAP130	chromosome:C_jacchus3.2.1:6:1:158406734:1	31203915	31287608	D	Sin3A-associated protein, 130kDa [Source:HGNC Symbol;Acc:HGNC:29813]
ENSCJAG00000010743	KNOWN_BY_PROJECTION	protein_coding	AMMECR1L	chromosome:C_jacchus3.2.1:6:1:158406734:1	31271410	31386702	D	AMMECR1-like [Source:HGNC Symbol;Acc:HGNC:28658]
ENSCJAG00000010706	KNOWN	protein_coding	WDR33	chromosome:C_jacchus3.2.1:6:1:158406734:1	31439454	31551617	D	Pre-mRNA 3' end processing protein WDR33 isoform 1 {ECO:0000313|EMBL:JAB03891.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019774}  [Source:UniProtKB/TrEMBL;Acc:F6WDG3]
ENSCJAG00000010669	KNOWN_BY_PROJECTION	protein_coding	LIMS2	chromosome:C_jacchus3.2.1:6:1:158406734:1	31575063	31620367	D	LIM and senescent cell antigen-like domains 2 [Source:HGNC Symbol;Acc:HGNC:16084]
ENSCJAG00000010703	KNOWN_BY_PROJECTION	protein_coding	GPR17	chromosome:C_jacchus3.2.1:6:1:158406734:1	31606128	31613028	R	G protein-coupled receptor 17 [Source:HGNC Symbol;Acc:HGNC:4471]
ENSCJAG00000010630	KNOWN_BY_PROJECTION	protein_coding	MYO7B	chromosome:C_jacchus3.2.1:6:1:158406734:1	31621190	31689970	R	myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
ENSCJAG00000010560	KNOWN	protein_coding	IWS1	chromosome:C_jacchus3.2.1:6:1:158406734:1	31723794	31764740	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048576}  [Source:UniProtKB/TrEMBL;Acc:F7EW11]
ENSCJAG00000033170	KNOWN_BY_PROJECTION	protein_coding	OR14J1	chromosome:C_jacchus3.2.1:6:1:158406734:1	31819669	31820727	R	olfactory receptor, family 14, subfamily J, member 1 [Source:HGNC Symbol;Acc:HGNC:13971]
ENSCJAG00000010548	NOVEL	protein_coding	ENSCJAG00000010548	chromosome:C_jacchus3.2.1:6:1:158406734:1	31835605	31836617	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019468}  [Source:UniProtKB/TrEMBL;Acc:F6T2Z8]
ENSCJAG00000010515	KNOWN_BY_PROJECTION	protein_coding	PROC	chromosome:C_jacchus3.2.1:6:1:158406734:1	31897796	31908623	R	protein C (inactivator of coagulation factors Va and VIIIa) [Source:HGNC Symbol;Acc:HGNC:9451]
ENSCJAG00000010475	KNOWN_BY_PROJECTION	protein_coding	MAP3K2	chromosome:C_jacchus3.2.1:6:1:158406734:1	31974845	32011653	D	mitogen-activated protein kinase kinase kinase 2 [Source:HGNC Symbol;Acc:HGNC:6854]
ENSCJAG00000010416	KNOWN	protein_coding	ERCC3	chromosome:C_jacchus3.2.1:6:1:158406734:1	32036311	32071587	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019317}  [Source:UniProtKB/TrEMBL;Acc:F6RW89]
ENSCJAG00000010406	NOVEL	protein_coding	ENSCJAG00000010406	chromosome:C_jacchus3.2.1:6:1:158406734:1	32074204	32075760	R	Pyruvate kinase {ECO:0000256|RuleBase:RU000504}  [Source:UniProtKB/TrEMBL;Acc:F6QF99]
ENSCJAG00000010396	NOVEL	protein_coding	ENSCJAG00000010396	chromosome:C_jacchus3.2.1:6:1:158406734:1	32083134	32084426	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019166}  [Source:UniProtKB/TrEMBL;Acc:F6QRW7]
ENSCJAG00000010387	KNOWN_BY_PROJECTION	protein_coding	CYP27C1	chromosome:C_jacchus3.2.1:6:1:158406734:1	32113771	32130695	D	cytochrome P450, family 27, subfamily C, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:33480]
ENSCJAG00000010378	NOVEL	protein_coding	ENSCJAG00000010378	chromosome:C_jacchus3.2.1:6:1:158406734:1	32202159	32202945	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052360}  [Source:UniProtKB/TrEMBL;Acc:F7INS0]
ENSCJAG00000010218	NOVEL	protein_coding	ENSCJAG00000010218	chromosome:C_jacchus3.2.1:6:1:158406734:1	32211283	32339252	D	<no descrition>
ENSCJAG00000008511	KNOWN_BY_PROJECTION	protein_coding	TSN	chromosome:C_jacchus3.2.1:6:1:158406734:1	32359091	32364235	D	translin [Source:HGNC Symbol;Acc:HGNC:12379]
ENSCJAG00000023160	NOVEL	protein_coding	ENSCJAG00000023160	chromosome:C_jacchus3.2.1:6:1:158406734:1	32415690	32416672	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041682}  [Source:UniProtKB/TrEMBL;Acc:F7HA45]
ENSCJAG00000011088	KNOWN_BY_PROJECTION	protein_coding	ZNF804A	chromosome:C_jacchus3.2.1:6:1:158406734:1	33429700	33748332	R	zinc finger protein 804A [Source:HGNC Symbol;Acc:HGNC:21711]
ENSCJAG00000011098	NOVEL	pseudogene	ENSCJAG00000011098	chromosome:C_jacchus3.2.1:6:1:158406734:1	34703452	34704347	D	<no descrition>
ENSCJAG00000034182	NOVEL	protein_coding	ENSCJAG00000034182	chromosome:C_jacchus3.2.1:6:1:158406734:1	35001876	35002733	R	<no descrition>
ENSCJAG00000011104	KNOWN	protein_coding	NUP35	chromosome:C_jacchus3.2.1:6:1:158406734:1	35358014	35397678	R	Nucleoporin NUP53 {ECO:0000256|PIRNR:PIRNR038119}  [Source:UniProtKB/TrEMBL;Acc:F7GR33]
ENSCJAG00000011160	KNOWN	protein_coding	DUSP19	chromosome:C_jacchus3.2.1:6:1:158406734:1	35409065	35435273	R	Dual specificity protein phosphatase 19 isoform 1 {ECO:0000313|EMBL:JAB07181.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020574}  [Source:UniProtKB/TrEMBL;Acc:F7GJN9]
ENSCJAG00000011170	KNOWN_BY_PROJECTION	protein_coding	NCKAP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	35474602	35579765	D	NCK-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:7666]
ENSCJAG00000011255	KNOWN	protein_coding	FRZB	chromosome:C_jacchus3.2.1:6:1:158406734:1	35637915	35671574	D	Secreted frizzled-related protein 3 {ECO:0000313|EMBL:JAB07995.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020772}  [Source:UniProtKB/TrEMBL;Acc:F7GJL6]
ENSCJAG00000011291	KNOWN_BY_PROJECTION	protein_coding	SNRPC	chromosome:C_jacchus3.2.1:6:1:158406734:1	35677940	35679835	R	small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:HGNC:11157]
ENSCJAG00000011295	KNOWN	protein_coding	DNAJC10	chromosome:C_jacchus3.2.1:6:1:158406734:1	35740312	35799473	R	DnaJ homolog subfamily C member 10 isoform 1 {ECO:0000313|EMBL:JAB06376.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020935}  [Source:UniProtKB/TrEMBL;Acc:F7H5Y0]
ENSCJAG00000011397	KNOWN_BY_PROJECTION	protein_coding	PDE1A	chromosome:C_jacchus3.2.1:6:1:158406734:1	36016007	36392536	D	phosphodiesterase 1A, calmodulin-dependent [Source:HGNC Symbol;Acc:HGNC:8774]
ENSCJAG00000034258	NOVEL	protein_coding	ENSCJAG00000034258	chromosome:C_jacchus3.2.1:6:1:158406734:1	36262834	36263844	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042027}  [Source:UniProtKB/TrEMBL;Acc:F6RTQ4]
ENSCJAG00000011437	KNOWN_BY_PROJECTION	protein_coding	PPP1R1C	chromosome:C_jacchus3.2.1:6:1:158406734:1	36404883	36552308	R	protein phosphatase 1, regulatory (inhibitor) subunit 1C [Source:HGNC Symbol;Acc:HGNC:14940]
ENSCJAG00000011452	KNOWN	protein_coding	SSFA2	chromosome:C_jacchus3.2.1:6:1:158406734:1	36604417	36642014	R	Sperm-specific antigen 2 isoform 1 {ECO:0000313|EMBL:JAB10214.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021178}  [Source:UniProtKB/TrEMBL;Acc:F6SB40]
ENSCJAG00000011526	NOVEL	pseudogene	ENSCJAG00000011526	chromosome:C_jacchus3.2.1:6:1:158406734:1	36848537	36848990	R	<no descrition>
ENSCJAG00000011529	KNOWN	protein_coding	NEUROD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	36857040	36860370	D	Neurogenic differentiation factor {ECO:0000256|PIRNR:PIRNR015618}  [Source:UniProtKB/TrEMBL;Acc:F6SAI0]
ENSCJAG00000011542	NOVEL	protein_coding	ITGA4	chromosome:C_jacchus3.2.1:6:1:158406734:1	36999192	37053105	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048703}  [Source:UniProtKB/TrEMBL;Acc:F6RF31]
ENSCJAG00000011556	NOVEL	protein_coding	ENSCJAG00000011556	chromosome:C_jacchus3.2.1:6:1:158406734:1	37363681	37364233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021230}  [Source:UniProtKB/TrEMBL;Acc:F6RCS2]
ENSCJAG00000011559	KNOWN_BY_PROJECTION	protein_coding	UBE2E3	chromosome:C_jacchus3.2.1:6:1:158406734:1	37465988	37548882	R	ubiquitin-conjugating enzyme E2E 3 [Source:HGNC Symbol;Acc:HGNC:12479]
ENSCJAG00000004064	NOVEL	pseudogene	ENSCJAG00000004064	chromosome:C_jacchus3.2.1:6:1:158406734:1	38002664	38003313	D	<no descrition>
ENSCJAG00000021534	KNOWN_BY_PROJECTION	protein_coding	ZNF385B	chromosome:C_jacchus3.2.1:6:1:158406734:1	38614370	38902558	D	zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
ENSCJAG00000021532	KNOWN	protein_coding	SESTD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	39134100	39232169	D	SEC14 domain and spectrin repeat-containing protein 1 {ECO:0000313|EMBL:JAB06497.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040097}  [Source:UniProtKB/TrEMBL;Acc:F7IGX2]
ENSCJAG00000032110	NOVEL	protein_coding	ENSCJAG00000032110	chromosome:C_jacchus3.2.1:6:1:158406734:1	39323590	39388586	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040088}  [Source:UniProtKB/TrEMBL;Acc:F7IGY6]
ENSCJAG00000021531	NOVEL	protein_coding	ENSCJAG00000021531	chromosome:C_jacchus3.2.1:6:1:158406734:1	39409830	39462660	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040094}  [Source:UniProtKB/TrEMBL;Acc:F7IGX3]
ENSCJAG00000021525	KNOWN_BY_PROJECTION	protein_coding	TTN	chromosome:C_jacchus3.2.1:6:1:158406734:1	39492303	39763529	D	titin [Source:HGNC Symbol;Acc:HGNC:12403]
ENSCJAG00000021529	NOVEL	protein_coding	ENSCJAG00000021529	chromosome:C_jacchus3.2.1:6:1:158406734:1	39551167	39554185	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040086}  [Source:UniProtKB/TrEMBL;Acc:F7IGY8]
ENSCJAG00000021524	KNOWN	protein_coding	PLEKHA3	chromosome:C_jacchus3.2.1:6:1:158406734:1	39777684	39805662	R	Pleckstrin homology domain-containing family A member 3 {ECO:0000313|EMBL:JAB11144.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040079}  [Source:UniProtKB/TrEMBL;Acc:F7IGZ9]
ENSCJAG00000021523	KNOWN_BY_PROJECTION	protein_coding	FKBP7	chromosome:C_jacchus3.2.1:6:1:158406734:1	39807431	39824521	D	FK506 binding protein 7 [Source:HGNC Symbol;Acc:HGNC:3723]
ENSCJAG00000021522	KNOWN_BY_PROJECTION	protein_coding	DFNB59	chromosome:C_jacchus3.2.1:6:1:158406734:1	39825993	39835137	R	deafness, autosomal recessive 59 [Source:HGNC Symbol;Acc:HGNC:29502]
ENSCJAG00000021521	KNOWN	protein_coding	PRKRA	chromosome:C_jacchus3.2.1:6:1:158406734:1	39836076	39853233	D	Interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 {ECO:0000313|EMBL:JAB15546.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040075}  [Source:UniProtKB/TrEMBL;Acc:F7IH03]
ENSCJAG00000021518	KNOWN	protein_coding	OSBPL6	chromosome:C_jacchus3.2.1:6:1:158406734:1	39884365	40000652	R	Oxysterol-binding protein {ECO:0000256|RuleBase:RU003845}  [Source:UniProtKB/TrEMBL;Acc:F7IH06]
ENSCJAG00000021516	KNOWN	protein_coding	RBM45	chromosome:C_jacchus3.2.1:6:1:158406734:1	40153267	40172177	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044593}  [Source:UniProtKB/TrEMBL;Acc:F7FI02]
ENSCJAG00000021514	NOVEL	protein_coding	ENSCJAG00000021514	chromosome:C_jacchus3.2.1:6:1:158406734:1	40203391	40213940	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040059}  [Source:UniProtKB/TrEMBL;Acc:F7IJA2]
ENSCJAG00000021732	NOVEL	protein_coding	ENSCJAG00000021732	chromosome:C_jacchus3.2.1:6:1:158406734:1	40221444	40290183	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040445}  [Source:UniProtKB/TrEMBL;Acc:F7I9I6]
ENSCJAG00000021508	KNOWN	protein_coding	AGPS	chromosome:C_jacchus3.2.1:6:1:158406734:1	40300721	40432888	R	Alkyldihydroxyacetonephosphate synthase, peroxisomal {ECO:0000313|EMBL:JAB07434.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040056}  [Source:UniProtKB/TrEMBL;Acc:F7IJA4]
ENSCJAG00000014554	KNOWN_BY_PROJECTION	protein_coding	PDE11A	chromosome:C_jacchus3.2.1:6:1:158406734:1	40533251	40958794	D	phosphodiesterase 11A [Source:HGNC Symbol;Acc:HGNC:8773]
ENSCJAG00000014552	NOVEL	pseudogene	ENSCJAG00000014552	chromosome:C_jacchus3.2.1:6:1:158406734:1	40967242	40969239	D	<no descrition>
ENSCJAG00000008340	KNOWN	protein_coding	NFE2L2	chromosome:C_jacchus3.2.1:6:1:158406734:1	41044916	41079735	D	Nuclear factor erythroid 2-related factor 2 isoform 1 {ECO:0000313|EMBL:JAB11678.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042599}  [Source:UniProtKB/TrEMBL;Acc:F7CLI8]
ENSCJAG00000008329	NOVEL	protein_coding	ENSCJAG00000008329	chromosome:C_jacchus3.2.1:6:1:158406734:1	41088770	41093757	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015354}  [Source:UniProtKB/TrEMBL;Acc:F7DEU4]
ENSCJAG00000008321	NOVEL	protein_coding	ENSCJAG00000008321	chromosome:C_jacchus3.2.1:6:1:158406734:1	41165110	41165827	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7HD10]
ENSCJAG00000008298	KNOWN	protein_coding	MTX2	chromosome:C_jacchus3.2.1:6:1:158406734:1	42015989	42070291	R	Metaxin-2 {ECO:0000313|EMBL:JAB01821.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015332}  [Source:UniProtKB/TrEMBL;Acc:F7E9R1]
ENSCJAG00000008290	KNOWN_BY_PROJECTION	protein_coding	HOXD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	42144532	42146847	R	homeobox D1 [Source:HGNC Symbol;Acc:HGNC:5132]
ENSCJAG00000034756	KNOWN_BY_PROJECTION	protein_coding	HOXD3	chromosome:C_jacchus3.2.1:6:1:158406734:1	42163972	42166823	R	homeobox D3 [Source:HGNC Symbol;Acc:HGNC:5137]
ENSCJAG00000008286	KNOWN	protein_coding	HOXD4	chromosome:C_jacchus3.2.1:6:1:158406734:1	42183563	42185415	R	Homeobox protein Hox-D4 {ECO:0000313|EMBL:JAB03486.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015294}  [Source:UniProtKB/TrEMBL;Acc:F7FF21]
ENSCJAG00000008250	KNOWN	protein_coding	HOXD13	chromosome:C_jacchus3.2.1:6:1:158406734:1	42187672	42246677	R	Homeobox protein Hox-D13 {ECO:0000313|EMBL:JAB03858.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015238}  [Source:UniProtKB/TrEMBL;Acc:F7GPP7]
ENSCJAG00000008284	KNOWN	protein_coding	HOXD8	chromosome:C_jacchus3.2.1:6:1:158406734:1	42203733	42206036	R	Homeobox protein Hox-D8 isoform 1 {ECO:0000313|EMBL:JAB01996.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050767}  [Source:UniProtKB/TrEMBL;Acc:F7HIP6]
ENSCJAG00000008282	NOVEL	pseudogene	ENSCJAG00000008282	chromosome:C_jacchus3.2.1:6:1:158406734:1	42206777	42207231	D	<no descrition>
ENSCJAG00000008274	KNOWN_BY_PROJECTION	protein_coding	HOXD9	chromosome:C_jacchus3.2.1:6:1:158406734:1	42211777	42212866	R	homeobox D9 [Source:HGNC Symbol;Acc:HGNC:5140]
ENSCJAG00000008269	KNOWN	protein_coding	HOXD10	chromosome:C_jacchus3.2.1:6:1:158406734:1	42217101	42220196	R	Homeobox protein Hox-D10 {ECO:0000313|EMBL:JAB01894.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015266}  [Source:UniProtKB/TrEMBL;Acc:F7G643]
ENSCJAG00000008254	NOVEL	pseudogene	ENSCJAG00000008254	chromosome:C_jacchus3.2.1:6:1:158406734:1	42237878	42238836	R	<no descrition>
ENSCJAG00000008243	KNOWN_BY_PROJECTION	protein_coding	EVX2	chromosome:C_jacchus3.2.1:6:1:158406734:1	42254882	42258726	D	even-skipped homeobox 2 [Source:HGNC Symbol;Acc:HGNC:3507]
ENSCJAG00000008226	KNOWN_BY_PROJECTION	protein_coding	KIAA1715	chromosome:C_jacchus3.2.1:6:1:158406734:1	42346307	42408329	D	KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
ENSCJAG00000008207	KNOWN	protein_coding	ATP5G3	chromosome:C_jacchus3.2.1:6:1:158406734:1	43234275	43237386	D	ATP synthase lipid-binding protein, mitochondrial isoform A {ECO:0000313|EMBL:JAB07073.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015185}  [Source:UniProtKB/TrEMBL;Acc:F7HAG9]
ENSCJAG00000008085	KNOWN	protein_coding	ATF2	chromosome:C_jacchus3.2.1:6:1:158406734:1	43248380	43338532	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015097}  [Source:UniProtKB/TrEMBL;Acc:F7EP03]
ENSCJAG00000008041	KNOWN	protein_coding	CHN1	chromosome:C_jacchus3.2.1:6:1:158406734:1	43410368	43617528	D	N-chimaerin isoform 1 {ECO:0000313|EMBL:JAB43196.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014921}  [Source:UniProtKB/TrEMBL;Acc:F7HX76]
ENSCJAG00000034350	NOVEL	pseudogene	ENSCJAG00000034350	chromosome:C_jacchus3.2.1:6:1:158406734:1	43447659	43448297	R	<no descrition>
ENSCJAG00000008007	KNOWN_BY_PROJECTION	protein_coding	CHRNA1	chromosome:C_jacchus3.2.1:6:1:158406734:1	43660278	43677606	D	cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:HGNC Symbol;Acc:HGNC:1955]
ENSCJAG00000007997	KNOWN	protein_coding	WIPF1	chromosome:C_jacchus3.2.1:6:1:158406734:1	43862344	43887174	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049505}  [Source:UniProtKB/TrEMBL;Acc:F6XTR9]
ENSCJAG00000007947	KNOWN_BY_PROJECTION	protein_coding	GPR155	chromosome:C_jacchus3.2.1:6:1:158406734:1	43962922	44004633	D	G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
ENSCJAG00000007909	KNOWN_BY_PROJECTION	protein_coding	SCRN3	chromosome:C_jacchus3.2.1:6:1:158406734:1	44009705	44032057	R	secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
ENSCJAG00000007884	KNOWN	protein_coding	CIR1	chromosome:C_jacchus3.2.1:6:1:158406734:1	44032073	44081593	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050688}  [Source:UniProtKB/TrEMBL;Acc:F7GDW2]
ENSCJAG00000007877	KNOWN	protein_coding	OLA1	chromosome:C_jacchus3.2.1:6:1:158406734:1	44201195	44381170	D	Obg-like ATPase 1 {ECO:0000256|HAMAP-Rule:MF_03167}  [Source:UniProtKB/TrEMBL;Acc:F7IBM8]
ENSCJAG00000018302	NOVEL	pseudogene	ENSCJAG00000018302	chromosome:C_jacchus3.2.1:6:1:158406734:1	44410760	44411625	R	<no descrition>
ENSCJAG00000007873	NOVEL	pseudogene	ENSCJAG00000007873	chromosome:C_jacchus3.2.1:6:1:158406734:1	44452209	44453010	D	<no descrition>
ENSCJAG00000007851	KNOWN	protein_coding	SP3	chromosome:C_jacchus3.2.1:6:1:158406734:1	44503338	44746651	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014566}  [Source:UniProtKB/TrEMBL;Acc:F7IGA7]
ENSCJAG00000007837	NOVEL	pseudogene	ENSCJAG00000007837	chromosome:C_jacchus3.2.1:6:1:158406734:1	44991432	44991927	D	<no descrition>
ENSCJAG00000035398	NOVEL	protein_coding	ENSCJAG00000035398	chromosome:C_jacchus3.2.1:6:1:158406734:1	45002563	45002962	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047363}  [Source:UniProtKB/TrEMBL;Acc:F7HWY2]
ENSCJAG00000007809	KNOWN	protein_coding	CDCA7	chromosome:C_jacchus3.2.1:6:1:158406734:1	45111785	45125817	R	Cell division cycle-associated protein 7 isoform 1 {ECO:0000313|EMBL:JAB04062.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042811}  [Source:UniProtKB/TrEMBL;Acc:F7BNL0]
ENSCJAG00000007736	KNOWN	protein_coding	ENSCJAG00000007736	chromosome:C_jacchus3.2.1:6:1:158406734:1	45211329	45429815	R	Mitogen-activated protein kinase kinase kinase MLT isoform 2 {ECO:0000313|EMBL:JAB09351.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014424}  [Source:UniProtKB/TrEMBL;Acc:F7HZZ7]
ENSCJAG00000007525	KNOWN	protein_coding	RAPGEF4	chromosome:C_jacchus3.2.1:6:1:158406734:1	45451046	45720445	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000014315}  [Source:UniProtKB/TrEMBL;Acc:F7IIW4]
ENSCJAG00000007507	KNOWN	protein_coding	PDK1	chromosome:C_jacchus3.2.1:6:1:158406734:1	45892785	45956584	R	Pyruvate dehydrogenase kinase, isozyme 1 {ECO:0000313|EMBL:JAB02927.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051118}  [Source:UniProtKB/TrEMBL;Acc:F6ZKW9]
ENSCJAG00000007506	NOVEL	pseudogene	ENSCJAG00000007506	chromosome:C_jacchus3.2.1:6:1:158406734:1	45997245	45998640	R	<no descrition>
ENSCJAG00000007399	KNOWN	protein_coding	ITGA6	chromosome:C_jacchus3.2.1:6:1:158406734:1	46028636	46109245	R	Integrin alpha-6 isoform b {ECO:0000313|EMBL:JAB06028.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013940}  [Source:UniProtKB/TrEMBL;Acc:F6X226]
ENSCJAG00000007396	NOVEL	pseudogene	ENSCJAG00000007396	chromosome:C_jacchus3.2.1:6:1:158406734:1	46346353	46347089	D	<no descrition>
ENSCJAG00000007389	KNOWN	protein_coding	DLX2	chromosome:C_jacchus3.2.1:6:1:158406734:1	46434895	46438186	D	Homeobox protein DLX-2 {ECO:0000313|EMBL:JAB16090.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013757}  [Source:UniProtKB/TrEMBL;Acc:F6WHW1]
ENSCJAG00000007381	KNOWN	protein_coding	DLX1	chromosome:C_jacchus3.2.1:6:1:158406734:1	46447845	46451988	R	Homeobox protein DLX-1 isoform 1 {ECO:0000313|EMBL:JAB13565.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013744}  [Source:UniProtKB/TrEMBL;Acc:F6X3R3]
ENSCJAG00000007373	KNOWN_BY_PROJECTION	protein_coding	METAP1D	chromosome:C_jacchus3.2.1:6:1:158406734:1	46456395	46536737	R	methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:32583]
ENSCJAG00000007340	KNOWN_BY_PROJECTION	protein_coding	HAT1	chromosome:C_jacchus3.2.1:6:1:158406734:1	46556029	46635230	R	histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]
ENSCJAG00000007305	KNOWN	protein_coding	SLC25A12	chromosome:C_jacchus3.2.1:6:1:158406734:1	46658196	46773154	D	Calcium-binding mitochondrial carrier protein Aralar1 {ECO:0000313|EMBL:JAB02591.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013660}  [Source:UniProtKB/TrEMBL;Acc:F7BGK0]
ENSCJAG00000007196	KNOWN	protein_coding	DYNC1I2	chromosome:C_jacchus3.2.1:6:1:158406734:1	46803397	46860927	R	Cytoplasmic dynein 1 intermediate chain 2 isoform 3 {ECO:0000313|EMBL:JAB05219.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013582}  [Source:UniProtKB/TrEMBL;Acc:F6X617]
ENSCJAG00000007191	KNOWN	protein_coding	CYBRD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	47005822	47043087	R	Cytochrome b reductase 1 isoform 1 {ECO:0000313|EMBL:JAB05991.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013369}  [Source:UniProtKB/TrEMBL;Acc:F7B047]
ENSCJAG00000007161	KNOWN_BY_PROJECTION	protein_coding	DCAF17	chromosome:C_jacchus3.2.1:6:1:158406734:1	47087775	47133023	R	DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
ENSCJAG00000007144	KNOWN_BY_PROJECTION	protein_coding	METTL8	chromosome:C_jacchus3.2.1:6:1:158406734:1	47132698	47250093	D	methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
ENSCJAG00000007157	NOVEL	protein_coding	ENSCJAG00000007157	chromosome:C_jacchus3.2.1:6:1:158406734:1	47224445	47226220	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042417}  [Source:UniProtKB/TrEMBL;Acc:F7B9B3]
ENSCJAG00000007141	NOVEL	protein_coding	ENSCJAG00000007141	chromosome:C_jacchus3.2.1:6:1:158406734:1	47375820	47376274	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013269}  [Source:UniProtKB/TrEMBL;Acc:F6XW33]
ENSCJAG00000007075	KNOWN	protein_coding	TLK1	chromosome:C_jacchus3.2.1:6:1:158406734:1	47417512	47583858	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013252}  [Source:UniProtKB/TrEMBL;Acc:F6XXF2]
ENSCJAG00000007051	KNOWN	protein_coding	GORASP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	47601179	47638979	R	Golgi reassembly-stacking protein 2 isoform 1 {ECO:0000313|EMBL:JAB07691.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042870}  [Source:UniProtKB/TrEMBL;Acc:F6Z4V2]
ENSCJAG00000035478	NOVEL	pseudogene	ENSCJAG00000035478	chromosome:C_jacchus3.2.1:6:1:158406734:1	47689649	47690322	D	<no descrition>
ENSCJAG00000006984	KNOWN	protein_coding	GAD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	47701718	47745983	R	Glutamate decarboxylase 1 isoform GAD67 {ECO:0000313|EMBL:JAB16736.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013068}  [Source:UniProtKB/TrEMBL;Acc:F6ZJT7]
ENSCJAG00000006973	KNOWN_BY_PROJECTION	protein_coding	ERICH2	chromosome:C_jacchus3.2.1:6:1:158406734:1	47764397	47776495	R	glutamate-rich 2 [Source:HGNC Symbol;Acc:HGNC:44395]
ENSCJAG00000006970	NOVEL	pseudogene	ENSCJAG00000006970	chromosome:C_jacchus3.2.1:6:1:158406734:1	47804278	47805958	R	<no descrition>
ENSCJAG00000006965	KNOWN_BY_PROJECTION	protein_coding	SP5	chromosome:C_jacchus3.2.1:6:1:158406734:1	47840173	47842812	R	Sp5 transcription factor [Source:HGNC Symbol;Acc:HGNC:14529]
ENSCJAG00000006877	KNOWN_BY_PROJECTION	protein_coding	MYO3B	chromosome:C_jacchus3.2.1:6:1:158406734:1	47902166	48406367	R	myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
ENSCJAG00000006961	NOVEL	pseudogene	ENSCJAG00000006961	chromosome:C_jacchus3.2.1:6:1:158406734:1	47941498	47942023	D	<no descrition>
ENSCJAG00000006779	KNOWN_BY_PROJECTION	protein_coding	UBR3	chromosome:C_jacchus3.2.1:6:1:158406734:1	48488194	48757548	R	ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
ENSCJAG00000006869	NOVEL	pseudogene	ENSCJAG00000006869	chromosome:C_jacchus3.2.1:6:1:158406734:1	48736048	48736539	D	<no descrition>
ENSCJAG00000006777	KNOWN_BY_PROJECTION	protein_coding	METTL5	chromosome:C_jacchus3.2.1:6:1:158406734:1	48760634	48781928	D	methyltransferase like 5 [Source:HGNC Symbol;Acc:HGNC:25006]
ENSCJAG00000006710	KNOWN	protein_coding	SSB	chromosome:C_jacchus3.2.1:6:1:158406734:1	48771093	48784736	R	Lupus La protein {ECO:0000313|EMBL:JAB07765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012521}  [Source:UniProtKB/TrEMBL;Acc:F7H2Y7]
ENSCJAG00000006681	KNOWN	protein_coding	KLHL23	chromosome:C_jacchus3.2.1:6:1:158406734:1	48824699	48877731	R	Kelch-like protein 23 {ECO:0000313|EMBL:JAB04188.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012369}  [Source:UniProtKB/TrEMBL;Acc:F7H8G6]
ENSCJAG00000037335	KNOWN	protein_coding	PHOSPHO2	chromosome:C_jacchus3.2.1:6:1:158406734:1	48869717	48877756	R	Pyridoxal phosphate phosphatase PHOSPHO2 {ECO:0000313|EMBL:JAB06083.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012353}  [Source:UniProtKB/TrEMBL;Acc:F7HDN3]
ENSCJAG00000006664	NOVEL	protein_coding	ENSCJAG00000006664	chromosome:C_jacchus3.2.1:6:1:158406734:1	48877801	48927482	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012314}  [Source:UniProtKB/TrEMBL;Acc:F7D814]
ENSCJAG00000006612	KNOWN	protein_coding	PPIG	chromosome:C_jacchus3.2.1:6:1:158406734:1	48943651	48993433	R	Peptidyl-prolyl cis-trans isomerase G {ECO:0000313|EMBL:JAB03728.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012285}  [Source:UniProtKB/TrEMBL;Acc:F7FB08]
ENSCJAG00000006566	KNOWN_BY_PROJECTION	protein_coding	FASTKD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	49006190	49050387	D	FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
ENSCJAG00000006532	KNOWN	protein_coding	KLHL41	chromosome:C_jacchus3.2.1:6:1:158406734:1	49053760	49101331	R	Bardet-Biedl syndrome 5 protein {ECO:0000313|EMBL:JAB10827.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012044}  [Source:UniProtKB/TrEMBL;Acc:F7H3T6]
ENSCJAG00000006333	KNOWN_BY_PROJECTION	protein_coding	LRP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	49201082	49420350	D	low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
ENSCJAG00000033572	NOVEL	protein_coding	ENSCJAG00000033572	chromosome:C_jacchus3.2.1:6:1:158406734:1	49433958	49435479	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047053}  [Source:UniProtKB/TrEMBL;Acc:F7I8X7]
ENSCJAG00000006331	NOVEL	pseudogene	ENSCJAG00000006331	chromosome:C_jacchus3.2.1:6:1:158406734:1	49442468	49444391	D	<no descrition>
ENSCJAG00000006320	KNOWN_BY_PROJECTION	protein_coding	DHRS9	chromosome:C_jacchus3.2.1:6:1:158406734:1	49478461	49506178	R	dehydrogenase/reductase (SDR family) member 9 [Source:HGNC Symbol;Acc:HGNC:16888]
ENSCJAG00000006261	KNOWN_BY_PROJECTION	protein_coding	ABCB11	chromosome:C_jacchus3.2.1:6:1:158406734:1	49594354	49706131	D	ATP-binding cassette, sub-family B (MDR/TAP), member 11 [Source:HGNC Symbol;Acc:HGNC:42]
ENSCJAG00000006252	KNOWN_BY_PROJECTION	protein_coding	G6PC2	chromosome:C_jacchus3.2.1:6:1:158406734:1	49720224	49727152	R	glucose-6-phosphatase, catalytic, 2 [Source:HGNC Symbol;Acc:HGNC:28906]
ENSCJAG00000006242	KNOWN_BY_PROJECTION	protein_coding	SPC25	chromosome:C_jacchus3.2.1:6:1:158406734:1	49738372	49756027	D	SPC25, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:24031]
ENSCJAG00000006199	KNOWN	protein_coding	NOSTRIN	chromosome:C_jacchus3.2.1:6:1:158406734:1	49766423	49831100	R	Nostrin isoform 2 {ECO:0000313|EMBL:JAB26015.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011443}  [Source:UniProtKB/TrEMBL;Acc:F7ISL5]
ENSCJAG00000006173	KNOWN	protein_coding	CERS6	chromosome:C_jacchus3.2.1:6:1:158406734:1	49861491	50206482	R	Ceramide synthase 6 isoform 1 {ECO:0000313|EMBL:JAB22344.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011375}  [Source:UniProtKB/TrEMBL;Acc:F7I442]
ENSCJAG00000006518	KNOWN_BY_PROJECTION	protein_coding	STK39	chromosome:C_jacchus3.2.1:6:1:158406734:1	50437780	50757144	D	serine threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
ENSCJAG00000006511	KNOWN	protein_coding	B3GALT1	chromosome:C_jacchus3.2.1:6:1:158406734:1	50836168	50880212	R	Beta-1,3-galactosyltransferase 1 {ECO:0000313|EMBL:JAB14680.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000012017}  [Source:UniProtKB/TrEMBL;Acc:F7H9D4]
ENSCJAG00000006471	KNOWN_BY_PROJECTION	protein_coding	XIRP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	51429735	51750100	R	xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
ENSCJAG00000006448	KNOWN_BY_PROJECTION	protein_coding	SCN7A	chromosome:C_jacchus3.2.1:6:1:158406734:1	52207970	52297190	D	sodium channel, voltage gated, type VII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10594]
ENSCJAG00000006358	KNOWN_BY_PROJECTION	protein_coding	SCN9A	chromosome:C_jacchus3.2.1:6:1:158406734:1	52329569	52532161	D	sodium channel, voltage gated, type IX alpha subunit [Source:HGNC Symbol;Acc:HGNC:10597]
ENSCJAG00000006445	NOVEL	pseudogene	ENSCJAG00000006445	chromosome:C_jacchus3.2.1:6:1:158406734:1	52468154	52469199	D	<no descrition>
ENSCJAG00000006343	KNOWN_BY_PROJECTION	protein_coding	SCN1A	chromosome:C_jacchus3.2.1:6:1:158406734:1	52660068	52735543	D	sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
ENSCJAG00000006296	KNOWN_BY_PROJECTION	protein_coding	TTC21B	chromosome:C_jacchus3.2.1:6:1:158406734:1	52771093	52864815	D	tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
ENSCJAG00000006274	KNOWN	protein_coding	GALNT3	chromosome:C_jacchus3.2.1:6:1:158406734:1	52919156	52965482	D	Polypeptide N-acetylgalactosaminyltransferase 3 {ECO:0000313|EMBL:JAB02760.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011571}  [Source:UniProtKB/TrEMBL;Acc:F7I6A1]
ENSCJAG00000006264	KNOWN	protein_coding	CSRNP3	chromosome:C_jacchus3.2.1:6:1:158406734:1	53021880	53234248	R	Cysteine/serine-rich nuclear protein 3 {ECO:0000313|EMBL:JAB15340.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011533}  [Source:UniProtKB/TrEMBL;Acc:F7IB25]
ENSCJAG00000006141	KNOWN	protein_coding	SCN2A	chromosome:C_jacchus3.2.1:6:1:158406734:1	53316061	53472964	R	Sodium channel protein {ECO:0000256|RuleBase:RU361132}  [Source:UniProtKB/TrEMBL;Acc:F7IDA9]
ENSCJAG00000006101	KNOWN_BY_PROJECTION	protein_coding	SCN3A	chromosome:C_jacchus3.2.1:6:1:158406734:1	53537078	53624890	D	sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
ENSCJAG00000006068	KNOWN_BY_PROJECTION	protein_coding	SLC38A11	chromosome:C_jacchus3.2.1:6:1:158406734:1	53769145	53826189	D	solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
ENSCJAG00000006065	KNOWN_BY_PROJECTION	protein_coding	COBLL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	53874594	54039548	D	cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
ENSCJAG00000031936	NOVEL	protein_coding	ENSCJAG00000031936	chromosome:C_jacchus3.2.1:6:1:158406734:1	54037816	54038229	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021747}  [Source:UniProtKB/TrEMBL;Acc:F6TQT7]
ENSCJAG00000006031	KNOWN_BY_PROJECTION	protein_coding	GRB14	chromosome:C_jacchus3.2.1:6:1:158406734:1	54106812	54250250	D	growth factor receptor-bound protein 14 [Source:HGNC Symbol;Acc:HGNC:4565]
ENSCJAG00000006024	KNOWN_BY_PROJECTION	protein_coding	FIGN	chromosome:C_jacchus3.2.1:6:1:158406734:1	54987931	55122546	D	fidgetin [Source:HGNC Symbol;Acc:HGNC:13285]
ENSCJAG00000005995	KNOWN_BY_PROJECTION	protein_coding	KCNH7	chromosome:C_jacchus3.2.1:6:1:158406734:1	56270795	56443433	D	potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
ENSCJAG00000005993	KNOWN_BY_PROJECTION	protein_coding	GCA	chromosome:C_jacchus3.2.1:6:1:158406734:1	56359539	56474540	R	grancalcin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:HGNC:15990]
ENSCJAG00000005956	KNOWN	protein_coding	IFIH1	chromosome:C_jacchus3.2.1:6:1:158406734:1	56493607	56545466	D	Interferon-induced helicase C domain-containing protein 1 {ECO:0000313|EMBL:JAB07951.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011007}  [Source:UniProtKB/TrEMBL;Acc:F7IN54]
ENSCJAG00000005868	KNOWN	protein_coding	FAP	chromosome:C_jacchus3.2.1:6:1:158406734:1	56571872	56643345	D	Seprase {ECO:0000313|EMBL:JAB09376.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010933}  [Source:UniProtKB/TrEMBL;Acc:F7IHN7]
ENSCJAG00000005852	KNOWN_BY_PROJECTION	protein_coding	GCG	chromosome:C_jacchus3.2.1:6:1:158406734:1	56661322	56670730	D	glucagon [Source:HGNC Symbol;Acc:HGNC:4191]
ENSCJAG00000005739	KNOWN	protein_coding	DPP4	chromosome:C_jacchus3.2.1:6:1:158406734:1	56745824	56832803	D	Dipeptidyl peptidase 4 {ECO:0000313|EMBL:JAB05718.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010725}  [Source:UniProtKB/TrEMBL;Acc:F7IHU4]
ENSCJAG00000005614	KNOWN	protein_coding	SLC4A10	chromosome:C_jacchus3.2.1:6:1:158406734:1	56839338	57251154	R	Sodium-driven chloride bicarbonate exchanger isoform 1 {ECO:0000313|EMBL:JAB21922.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010514}  [Source:UniProtKB/TrEMBL;Acc:F7II03]
ENSCJAG00000005603	KNOWN_BY_PROJECTION	protein_coding	TBR1	chromosome:C_jacchus3.2.1:6:1:158406734:1	57501706	57510795	R	T-box, brain, 1 [Source:HGNC Symbol;Acc:HGNC:11590]
ENSCJAG00000005572	KNOWN	protein_coding	PSMD14	chromosome:C_jacchus3.2.1:6:1:158406734:1	57515202	57625390	R	26S proteasome non-ATPase regulatory subunit 14 {ECO:0000313|EMBL:JAB02762.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050569}  [Source:UniProtKB/TrEMBL;Acc:F7E5W5]
ENSCJAG00000005539	KNOWN	protein_coding	TANK	chromosome:C_jacchus3.2.1:6:1:158406734:1	57686131	57796341	R	TRAF family member-associated NF-kappa-B activator isoform a {ECO:0000313|EMBL:JAB11253.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010147}  [Source:UniProtKB/TrEMBL;Acc:F6YBK2]
ENSCJAG00000014861	KNOWN	protein_coding	RBMS1	chromosome:C_jacchus3.2.1:6:1:158406734:1	58499975	58718834	D	RNA-binding motif, single-stranded-interacting protein 1 isoform a {ECO:0000313|EMBL:JAB05699.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047214}  [Source:UniProtKB/TrEMBL;Acc:F7IKM2]
ENSCJAG00000037955	NOVEL	pseudogene	ENSCJAG00000037955	chromosome:C_jacchus3.2.1:6:1:158406734:1	58717293	58718834	D	<no descrition>
ENSCJAG00000014918	KNOWN_BY_PROJECTION	protein_coding	PLA2R1	chromosome:C_jacchus3.2.1:6:1:158406734:1	58721031	59027832	D	phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:HGNC:9042]
ENSCJAG00000014862	KNOWN_BY_PROJECTION	protein_coding	ITGB6	chromosome:C_jacchus3.2.1:6:1:158406734:1	58793551	58871522	D	integrin, beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]
ENSCJAG00000014982	KNOWN	protein_coding	LY75	chromosome:C_jacchus3.2.1:6:1:158406734:1	59073970	59286487	D	CD302 antigen isoform 2 {ECO:0000313|EMBL:JAB09683.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027592}  [Source:UniProtKB/TrEMBL;Acc:F7HF60]
ENSCJAG00000015023	KNOWN	protein_coding	MARCH7	chromosome:C_jacchus3.2.1:6:1:158406734:1	59249958	59304714	R	E3 ubiquitin-protein ligase MARCH7 {ECO:0000313|EMBL:JAB29992.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027719}  [Source:UniProtKB/TrEMBL;Acc:F7E884]
ENSCJAG00000015052	KNOWN_BY_PROJECTION	protein_coding	BAZ2B	chromosome:C_jacchus3.2.1:6:1:158406734:1	59418356	59748869	D	bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
ENSCJAG00000015117	KNOWN_BY_PROJECTION	protein_coding	WDSUB1	chromosome:C_jacchus3.2.1:6:1:158406734:1	59791666	59843093	D	WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
ENSCJAG00000015159	KNOWN_BY_PROJECTION	protein_coding	TANC1	chromosome:C_jacchus3.2.1:6:1:158406734:1	59847491	60076156	R	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
ENSCJAG00000015208	NOVEL	pseudogene	ENSCJAG00000015208	chromosome:C_jacchus3.2.1:6:1:158406734:1	60027505	60028048	D	<no descrition>
ENSCJAG00000015214	KNOWN	protein_coding	DAPL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	60228665	60250569	R	Death-associated protein-like 1 {ECO:0000313|EMBL:JAB18918.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028047}  [Source:UniProtKB/TrEMBL;Acc:F6VSI1]
ENSCJAG00000015222	NOVEL	protein_coding	ENSCJAG00000015222	chromosome:C_jacchus3.2.1:6:1:158406734:1	60285343	60288500	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028076}  [Source:UniProtKB/TrEMBL;Acc:F6UKM8]
ENSCJAG00000015236	KNOWN	protein_coding	PKP4	chromosome:C_jacchus3.2.1:6:1:158406734:1	60381059	60540424	R	Plakophilin-4 isoform b {ECO:0000313|EMBL:JAB19515.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028207}  [Source:UniProtKB/TrEMBL;Acc:F6Y589]
ENSCJAG00000015325	KNOWN_BY_PROJECTION	protein_coding	CCDC148	chromosome:C_jacchus3.2.1:6:1:158406734:1	60611881	60910405	D	coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
ENSCJAG00000015359	KNOWN	protein_coding	ACVR1	chromosome:C_jacchus3.2.1:6:1:158406734:1	61228594	61373090	D	Activin receptor type-1 {ECO:0000313|EMBL:JAB04630.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028325}  [Source:UniProtKB/TrEMBL;Acc:F7B7W8]
ENSCJAG00000015385	KNOWN	protein_coding	ACVR1C	chromosome:C_jacchus3.2.1:6:1:158406734:1	61492304	61645596	D	Activin receptor type-1C isoform 1 {ECO:0000313|EMBL:JAB29621.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028369}  [Source:UniProtKB/TrEMBL;Acc:F6ZNW8]
ENSCJAG00000015406	KNOWN_BY_PROJECTION	protein_coding	CYTIP	chromosome:C_jacchus3.2.1:6:1:158406734:1	61704948	61779116	D	cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
ENSCJAG00000015419	KNOWN_BY_PROJECTION	protein_coding	ERMN	chromosome:C_jacchus3.2.1:6:1:158406734:1	61847792	61856635	D	ermin, ERM-like protein [Source:HGNC Symbol;Acc:HGNC:29208]
ENSCJAG00000015426	KNOWN_BY_PROJECTION	protein_coding	GALNT5	chromosome:C_jacchus3.2.1:6:1:158406734:1	61862793	61912040	R	polypeptide N-acetylgalactosaminyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:4127]
ENSCJAG00000015452	KNOWN	protein_coding	GPD2	chromosome:C_jacchus3.2.1:6:1:158406734:1	62599255	62710839	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028470}  [Source:UniProtKB/TrEMBL;Acc:F6V331]
ENSCJAG00000015464	KNOWN	protein_coding	NR4A2	chromosome:C_jacchus3.2.1:6:1:158406734:1	62866627	62875041	D	Nuclear receptor subfamily 4 group A member 2 {ECO:0000313|EMBL:JAB09103.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028517}  [Source:UniProtKB/TrEMBL;Acc:F7BPB9]
ENSCJAG00000015490	KNOWN	protein_coding	KCNJ3	chromosome:C_jacchus3.2.1:6:1:158406734:1	64386231	64536148	R	G protein-activated inward rectifier potassium channel 1 isoform 1 {ECO:0000313|EMBL:JAB18483.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028533}  [Source:UniProtKB/TrEMBL;Acc:F7AN67]
ENSCJAG00000015498	NOVEL	pseudogene	ENSCJAG00000015498	chromosome:C_jacchus3.2.1:6:1:158406734:1	64490786	64491396	D	<no descrition>
ENSCJAG00000015503	KNOWN	protein_coding	GALNT13	chromosome:C_jacchus3.2.1:6:1:158406734:1	64794553	65182717	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028562}  [Source:UniProtKB/TrEMBL;Acc:F6ZMJ1]
ENSCJAG00000015523	NOVEL	protein_coding	ENSCJAG00000015523	chromosome:C_jacchus3.2.1:6:1:158406734:1	64973838	64974528	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028578}  [Source:UniProtKB/TrEMBL;Acc:F6Z544]
ENSCJAG00000015533	KNOWN	protein_coding	ARL6IP6	chromosome:C_jacchus3.2.1:6:1:158406734:1	66585357	66632495	R	ADP-ribosylation factor-like protein 6-interacting protein 6 {ECO:0000313|EMBL:JAB04937.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028599}  [Source:UniProtKB/TrEMBL;Acc:F6Z438]
ENSCJAG00000015541	KNOWN_BY_PROJECTION	protein_coding	PRPF40A	chromosome:C_jacchus3.2.1:6:1:158406734:1	66632937	66693831	D	PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:16463]
ENSCJAG00000015629	KNOWN_BY_PROJECTION	protein_coding	FMNL2	chromosome:C_jacchus3.2.1:6:1:158406734:1	66696274	66832530	R	formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
ENSCJAG00000001009	NOVEL	protein_coding	ENSCJAG00000001009	chromosome:C_jacchus3.2.1:6:1:158406734:1	66975069	66995475	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001718}  [Source:UniProtKB/TrEMBL;Acc:F6YDS6]
ENSCJAG00000001014	NOVEL	protein_coding	ENSCJAG00000001014	chromosome:C_jacchus3.2.1:6:1:158406734:1	67136007	67137407	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000001726}  [Source:UniProtKB/TrEMBL;Acc:F6YDL5]
ENSCJAG00000003346	KNOWN	protein_coding	STAM2	chromosome:C_jacchus3.2.1:6:1:158406734:1	67229347	67284085	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006107}  [Source:UniProtKB/TrEMBL;Acc:F7F5W3]
ENSCJAG00000003326	KNOWN	protein_coding	CACNB4	chromosome:C_jacchus3.2.1:6:1:158406734:1	67311614	67624987	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000015477}; Voltage-dependent L-type calcium channel subunit beta-4 isoform a {ECO:0000313|EMBL:JAB21641.1}  [Source:UniProtKB/TrEMBL;Acc:F7GGT8]
ENSCJAG00000003311	KNOWN	protein_coding	ARL5A	chromosome:C_jacchus3.2.1:6:1:158406734:1	67628562	67663960	D	ADP-ribosylation factor-like protein 5A isoform 1 {ECO:0000313|EMBL:JAB03904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006030}  [Source:UniProtKB/TrEMBL;Acc:F7H1V8]
ENSCJAG00000003175	KNOWN_BY_PROJECTION	protein_coding	NEB	chromosome:C_jacchus3.2.1:6:1:158406734:1	67721942	67947177	D	nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
ENSCJAG00000003138	KNOWN_BY_PROJECTION	protein_coding	RIF1	chromosome:C_jacchus3.2.1:6:1:158406734:1	67956025	68019925	R	replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
ENSCJAG00000003134	KNOWN	protein_coding	TNFAIP6	chromosome:C_jacchus3.2.1:6:1:158406734:1	68036989	68057530	R	Tumor necrosis factor-inducible gene 6 protein {ECO:0000313|EMBL:JAB35436.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005708}  [Source:UniProtKB/TrEMBL;Acc:F7IEL1]
ENSCJAG00000003127	KNOWN	protein_coding	NMI	chromosome:C_jacchus3.2.1:6:1:158406734:1	68120877	68142937	D	N-myc-interactor {ECO:0000313|EMBL:JAB12523.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005695}  [Source:UniProtKB/TrEMBL;Acc:F7HL49]
ENSCJAG00000003125	KNOWN_BY_PROJECTION	protein_coding	RBM43	chromosome:C_jacchus3.2.1:6:1:158406734:1	68157847	68162800	D	RNA binding motif protein 43 [Source:HGNC Symbol;Acc:HGNC:24790]
ENSCJAG00000003120	NOVEL	protein_coding	ENSCJAG00000003120	chromosome:C_jacchus3.2.1:6:1:158406734:1	68410553	68461184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005676}  [Source:UniProtKB/TrEMBL;Acc:F7HVU3]
ENSCJAG00000003104	KNOWN	protein_coding	RND3	chromosome:C_jacchus3.2.1:6:1:158406734:1	68991438	69010781	D	Rho-related GTP-binding protein RhoE {ECO:0000313|EMBL:JAB07303.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005670}  [Source:UniProtKB/TrEMBL;Acc:F7HVU6]
ENSCJAG00000003086	KNOWN	protein_coding	MMADHC	chromosome:C_jacchus3.2.1:6:1:158406734:1	69867990	69886862	D	Methylmalonic aciduria and homocystinuria type D protein, mitochondrial {ECO:0000313|EMBL:JAB11731.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005624}  [Source:UniProtKB/TrEMBL;Acc:F7I2W6]
ENSCJAG00000003080	KNOWN	protein_coding	LYPD6	chromosome:C_jacchus3.2.1:6:1:158406734:1	70026874	70172595	D	Ly6/PLAUR domain-containing protein 6 {ECO:0000313|EMBL:JAB21068.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047565}  [Source:UniProtKB/TrEMBL;Acc:F7E3Z2]
ENSCJAG00000003077	KNOWN_BY_PROJECTION	protein_coding	LYPD6B	chromosome:C_jacchus3.2.1:6:1:158406734:1	70260662	70467264	R	LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
ENSCJAG00000003053	KNOWN	protein_coding	KIF5C	chromosome:C_jacchus3.2.1:6:1:158406734:1	70482304	70585844	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005576}  [Source:UniProtKB/TrEMBL;Acc:F7IEQ9]
ENSCJAG00000012637	KNOWN	protein_coding	EPC2	chromosome:C_jacchus3.2.1:6:1:158406734:1	70729841	70860571	R	Enhancer of polycomb homolog {ECO:0000256|RuleBase:RU361124}  [Source:UniProtKB/TrEMBL;Acc:F7IQD8]
ENSCJAG00000012594	KNOWN	protein_coding	MBD5	chromosome:C_jacchus3.2.1:6:1:158406734:1	71007846	71063706	R	Methyl-CpG-binding domain protein 5 {ECO:0000313|EMBL:JAB17041.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023110}  [Source:UniProtKB/TrEMBL;Acc:F7I465]
ENSCJAG00000012561	KNOWN_BY_PROJECTION	protein_coding	ORC4	chromosome:C_jacchus3.2.1:6:1:158406734:1	71494877	71570713	D	origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
ENSCJAG00000012496	KNOWN	protein_coding	ACVR2A	chromosome:C_jacchus3.2.1:6:1:158406734:1	71573870	71661194	R	Activin receptor type-2A {ECO:0000313|EMBL:JAB07237.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022973}  [Source:UniProtKB/TrEMBL;Acc:F7I856]
ENSCJAG00000035064	NOVEL	protein_coding	ENSCJAG00000035064	chromosome:C_jacchus3.2.1:6:1:158406734:1	74130733	74131558	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042713}  [Source:UniProtKB/TrEMBL;Acc:F6XEE8]
ENSCJAG00000012457	KNOWN	protein_coding	ZEB2	chromosome:C_jacchus3.2.1:6:1:158406734:1	75008542	75144706	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043952}; Zinc finger E-box-binding homeobox 2 isoform 2 {ECO:0000313|EMBL:JAB28632.1}  [Source:UniProtKB/TrEMBL;Acc:F7IRF3]
ENSCJAG00000012421	KNOWN	protein_coding	GTDC1	chromosome:C_jacchus3.2.1:6:1:158406734:1	75236960	75610555	D	Glycosyltransferase-like domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB02987.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022799}  [Source:UniProtKB/TrEMBL;Acc:F7I3M4]
ENSCJAG00000012381	KNOWN_BY_PROJECTION	protein_coding	ARHGAP15	chromosome:C_jacchus3.2.1:6:1:158406734:1	75791208	76461940	R	Rho GTPase activating protein 15 [Source:HGNC Symbol;Acc:HGNC:21030]
ENSCJAG00000012322	KNOWN_BY_PROJECTION	protein_coding	KYNU	chromosome:C_jacchus3.2.1:6:1:158406734:1	76549186	76725169	R	kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
ENSCJAG00000033805	NOVEL	protein_coding	ENSCJAG00000033805	chromosome:C_jacchus3.2.1:6:1:158406734:1	76745666	76746475	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046517}  [Source:UniProtKB/TrEMBL;Acc:F7I8J5]
ENSCJAG00000012316	NOVEL	protein_coding	ENSCJAG00000012316	chromosome:C_jacchus3.2.1:6:1:158406734:1	76763271	76766718	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052181}  [Source:UniProtKB/TrEMBL;Acc:F7HXZ7]
ENSCJAG00000012158	KNOWN_BY_PROJECTION	protein_coding	LRP1B	chromosome:C_jacchus3.2.1:6:1:158406734:1	78344541	79405708	D	low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
ENSCJAG00000012386	NOVEL	protein_coding	ENSCJAG00000012386	chromosome:C_jacchus3.2.1:6:1:158406734:1	78771483	78797874	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022679}  [Source:UniProtKB/TrEMBL;Acc:F7IPX6]
ENSCJAG00000032563	NOVEL	protein_coding	ENSCJAG00000032563	chromosome:C_jacchus3.2.1:6:1:158406734:1	79441160	79441703	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048209}  [Source:UniProtKB/TrEMBL;Acc:F7FPZ7]
ENSCJAG00000034296	NOVEL	pseudogene	ENSCJAG00000034296	chromosome:C_jacchus3.2.1:6:1:158406734:1	79560565	79561303	D	<no descrition>
ENSCJAG00000012152	KNOWN_BY_PROJECTION	protein_coding	NXPH2	chromosome:C_jacchus3.2.1:6:1:158406734:1	80841305	80953220	D	neurexophilin 2 [Source:HGNC Symbol;Acc:HGNC:8076]
ENSCJAG00000012133	KNOWN	protein_coding	SPOPL	chromosome:C_jacchus3.2.1:6:1:158406734:1	81050456	81070192	R	Speckle-type POZ protein-like {ECO:0000313|EMBL:JAB04197.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022280}  [Source:UniProtKB/TrEMBL;Acc:F7BCH0]
ENSCJAG00000031429	NOVEL	pseudogene	ENSCJAG00000031429	chromosome:C_jacchus3.2.1:6:1:158406734:1	81307832	81308511	R	<no descrition>
ENSCJAG00000012130	NOVEL	pseudogene	ENSCJAG00000012130	chromosome:C_jacchus3.2.1:6:1:158406734:1	81333764	81334377	R	<no descrition>
ENSCJAG00000012109	KNOWN	protein_coding	HNMT	chromosome:C_jacchus3.2.1:6:1:158406734:1	81590526	81639684	R	Histamine N-methyltransferase isoform 1 {ECO:0000313|EMBL:JAB02469.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022250}  [Source:UniProtKB/TrEMBL;Acc:F7C9F9]
ENSCJAG00000012106	NOVEL	protein_coding	ENSCJAG00000012106	chromosome:C_jacchus3.2.1:6:1:158406734:1	81841125	81842575	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022212}  [Source:UniProtKB/TrEMBL;Acc:F6UNQ0]
ENSCJAG00000012105	KNOWN_BY_PROJECTION	protein_coding	RBPMS2	chromosome:C_jacchus3.2.1:6:1:158406734:1	81892911	81893894	R	RNA binding protein with multiple splicing 2 [Source:HGNC Symbol;Acc:HGNC:19098]
ENSCJAG00000033314	NOVEL	protein_coding	ENSCJAG00000033314	chromosome:C_jacchus3.2.1:6:1:158406734:1	81973611	81974184	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048173}  [Source:UniProtKB/TrEMBL;Acc:F7GYL5]
ENSCJAG00000032286	NOVEL	protein_coding	ENSCJAG00000032286	chromosome:C_jacchus3.2.1:6:1:158406734:1	82091215	82099630	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044011}  [Source:UniProtKB/TrEMBL;Acc:F7HHS8]
ENSCJAG00000012054	KNOWN_BY_PROJECTION	protein_coding	THSD7B	chromosome:C_jacchus3.2.1:6:1:158406734:1	82167410	82933651	R	thrombospondin, type I, domain containing 7B [Source:HGNC Symbol;Acc:HGNC:29348]
ENSCJAG00000012046	KNOWN	protein_coding	CXCR4	chromosome:C_jacchus3.2.1:6:1:158406734:1	83702588	83706415	D	C-X-C chemokine receptor type 4  [Source:UniProtKB/Swiss-Prot;Acc:Q8HZU1]
ENSCJAG00000011967	KNOWN	protein_coding	DARS	chromosome:C_jacchus3.2.1:6:1:158406734:1	83834254	83913527	D	Aspartate--tRNA ligase, cytoplasmic {ECO:0000313|EMBL:JAB24533.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022106}  [Source:UniProtKB/TrEMBL;Acc:F6YTG3]
ENSCJAG00000011898	KNOWN	protein_coding	MCM6	chromosome:C_jacchus3.2.1:6:1:158406734:1	83945291	83993109	D	DNA replication licensing factor MCM6 {ECO:0000313|EMBL:JAB02792.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021852}  [Source:UniProtKB/TrEMBL;Acc:F6R809]
ENSCJAG00000011870	KNOWN_BY_PROJECTION	protein_coding	LCT	chromosome:C_jacchus3.2.1:6:1:158406734:1	83996032	84081030	D	lactase [Source:HGNC Symbol;Acc:HGNC:6530]
ENSCJAG00000011842	KNOWN	protein_coding	UBXN4	chromosome:C_jacchus3.2.1:6:1:158406734:1	84092224	84139540	R	UBX domain-containing protein 4 {ECO:0000313|EMBL:JAB06728.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021778}  [Source:UniProtKB/TrEMBL;Acc:F6T3H5]
ENSCJAG00000011835	NOVEL	pseudogene	ENSCJAG00000011835	chromosome:C_jacchus3.2.1:6:1:158406734:1	84244805	84245587	R	<no descrition>
ENSCJAG00000011718	KNOWN	protein_coding	R3HDM1	chromosome:C_jacchus3.2.1:6:1:158406734:1	84251941	84447996	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021713}  [Source:UniProtKB/TrEMBL;Acc:F6PHV6]
ENSCJAG00000011678	NOVEL	protein_coding	ENSCJAG00000011678	chromosome:C_jacchus3.2.1:6:1:158406734:1	84448273	84770840	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021499}  [Source:UniProtKB/TrEMBL;Acc:F6QFI7]
ENSCJAG00000011643	KNOWN_BY_PROJECTION	protein_coding	RAB3GAP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	84797855	84896174	R	RAB3 GTPase activating protein subunit 1 (catalytic) [Source:HGNC Symbol;Acc:HGNC:17063]
ENSCJAG00000011631	KNOWN_BY_PROJECTION	protein_coding	MAP3K19	chromosome:C_jacchus3.2.1:6:1:158406734:1	84954348	85019077	D	mitogen-activated protein kinase kinase kinase 19 [Source:HGNC Symbol;Acc:HGNC:26249]
ENSCJAG00000011573	KNOWN	protein_coding	CCNT2	chromosome:C_jacchus3.2.1:6:1:158406734:1	85031987	85072672	R	Cyclin-T2 isoform b {ECO:0000313|EMBL:JAB33234.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038598}  [Source:UniProtKB/TrEMBL;Acc:F7I6U8]
ENSCJAG00000011557	KNOWN_BY_PROJECTION	protein_coding	ACMSD	chromosome:C_jacchus3.2.1:6:1:158406734:1	85088277	85177833	R	aminocarboxymuconate semialdehyde decarboxylase [Source:HGNC Symbol;Acc:HGNC:19288]
ENSCJAG00000011570	NOVEL	pseudogene	ENSCJAG00000011570	chromosome:C_jacchus3.2.1:6:1:158406734:1	85150267	85151663	R	<no descrition>
ENSCJAG00000011546	KNOWN_BY_PROJECTION	protein_coding	TMEM163	chromosome:C_jacchus3.2.1:6:1:158406734:1	85273209	85548072	D	transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
ENSCJAG00000011518	KNOWN	protein_coding	MGAT5	chromosome:C_jacchus3.2.1:6:1:158406734:1	85554960	85750762	R	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A {ECO:0000313|EMBL:JAB02894.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021202}  [Source:UniProtKB/TrEMBL;Acc:F6RNJ2]
ENSCJAG00000011540	NOVEL	protein_coding	ENSCJAG00000011540	chromosome:C_jacchus3.2.1:6:1:158406734:1	85721977	85723673	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021208}  [Source:UniProtKB/TrEMBL;Acc:F6RND7]
ENSCJAG00000014208	KNOWN_BY_PROJECTION	protein_coding	NCKAP5	chromosome:C_jacchus3.2.1:6:1:158406734:1	86429155	87331249	D	NCK-associated protein 5 [Source:HGNC Symbol;Acc:HGNC:29847]
ENSCJAG00000014221	NOVEL	protein_coding	ENSCJAG00000014221	chromosome:C_jacchus3.2.1:6:1:158406734:1	87229040	87230816	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026151}  [Source:UniProtKB/TrEMBL;Acc:F7I9I8]
ENSCJAG00000014205	KNOWN	protein_coding	LYPD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	87333082	87369844	D	Ly6/PLAUR domain-containing protein 1 isoform a {ECO:0000313|EMBL:JAB27825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026126}  [Source:UniProtKB/TrEMBL;Acc:F7IE97]
ENSCJAG00000014203	KNOWN	protein_coding	GPR39	chromosome:C_jacchus3.2.1:6:1:158406734:1	87370248	87608028	R	G-protein coupled receptor 39 {ECO:0000313|EMBL:JAB09385.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026120}  [Source:UniProtKB/TrEMBL;Acc:F7IEA5]
ENSCJAG00000014204	NOVEL	pseudogene	ENSCJAG00000014204	chromosome:C_jacchus3.2.1:6:1:158406734:1	87370330	87371011	D	<no descrition>
ENSCJAG00000014139	KNOWN	protein_coding	SLC35F5	chromosome:C_jacchus3.2.1:6:1:158406734:1	87758027	87799963	R	Solute carrier family 35 member F5 {ECO:0000313|EMBL:JAB07280.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000026112}  [Source:UniProtKB/TrEMBL;Acc:F7IGM5]
ENSCJAG00000014138	NOVEL	pseudogene	ENSCJAG00000014138	chromosome:C_jacchus3.2.1:6:1:158406734:1	87895900	87896474	R	<no descrition>
ENSCJAG00000014091	KNOWN	protein_coding	ACTR3	chromosome:C_jacchus3.2.1:6:1:158406734:1	87940788	88011216	D	Actin-related protein 3 {ECO:0000313|EMBL:JAB03825.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000025986}  [Source:UniProtKB/TrEMBL;Acc:F7CQP3]
ENSCJAG00000014088	NOVEL	pseudogene	ENSCJAG00000014088	chromosome:C_jacchus3.2.1:6:1:158406734:1	88378062	88378629	D	<no descrition>
ENSCJAG00000014051	KNOWN_BY_PROJECTION	protein_coding	DPP10	chromosome:C_jacchus3.2.1:6:1:158406734:1	89237439	89846055	D	dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
ENSCJAG00000031426	NOVEL	pseudogene	ENSCJAG00000031426	chromosome:C_jacchus3.2.1:6:1:158406734:1	89547919	89548650	D	<no descrition>
ENSCJAG00000021414	KNOWN	protein_coding	DDX18	chromosome:C_jacchus3.2.1:6:1:158406734:1	91850097	91868639	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039852}  [Source:UniProtKB/TrEMBL;Acc:F7FRR3]
ENSCJAG00000021415	NOVEL	protein_coding	ENSCJAG00000021415	chromosome:C_jacchus3.2.1:6:1:158406734:1	91903133	91936223	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039855}  [Source:UniProtKB/TrEMBL;Acc:F7FRP7]
ENSCJAG00000021418	KNOWN	protein_coding	CCDC93	chromosome:C_jacchus3.2.1:6:1:158406734:1	91947069	92039893	R	Coiled-coil domain containing 93 (Predicted) {ECO:0000313|EMBL:ABY74564.1}; Coiled-coil domain-containing protein 93 {ECO:0000313|EMBL:JAB05876.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039863}  [Source:UniProtKB/TrEMBL;Acc:B0CMA3]
ENSCJAG00000021423	NOVEL	pseudogene	ENSCJAG00000021423	chromosome:C_jacchus3.2.1:6:1:158406734:1	92065805	92066364	R	<no descrition>
ENSCJAG00000021424	KNOWN	protein_coding	INSIG2	chromosome:C_jacchus3.2.1:6:1:158406734:1	92124491	92145369	D	Insulin-induced gene 2 protein  [Source:UniProtKB/Swiss-Prot;Acc:B0CMA4]
ENSCJAG00000021426	KNOWN_BY_PROJECTION	protein_coding	MARCO	chromosome:C_jacchus3.2.1:6:1:158406734:1	93006965	93047424	D	macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
ENSCJAG00000021430	KNOWN_BY_PROJECTION	protein_coding	C1QL2	chromosome:C_jacchus3.2.1:6:1:158406734:1	93211477	93212950	R	complement component 1, q subcomponent-like 2 [Source:HGNC Symbol;Acc:HGNC:24181]
ENSCJAG00000022382	NOVEL	protein_coding	ENSCJAG00000022382	chromosome:C_jacchus3.2.1:6:1:158406734:1	93268811	93269462	R	Ferritin {ECO:0000256|RuleBase:RU361145}  [Source:UniProtKB/TrEMBL;Acc:F7FH06]
ENSCJAG00000021433	KNOWN_BY_PROJECTION	protein_coding	STEAP3	chromosome:C_jacchus3.2.1:6:1:158406734:1	93279081	93316761	D	STEAP family member 3, metalloreductase [Source:HGNC Symbol;Acc:HGNC:24592]
ENSCJAG00000021436	KNOWN	protein_coding	DBI	chromosome:C_jacchus3.2.1:6:1:158406734:1	93290639	93424235	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000039894}  [Source:UniProtKB/TrEMBL;Acc:F7FCP9]
ENSCJAG00000021435	KNOWN	protein_coding	C2ORF76	chromosome:C_jacchus3.2.1:6:1:158406734:1	93354128	93418585	R	UPF0538 protein C2orf76 {ECO:0000313|EMBL:JAB24210.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000048097}  [Source:UniProtKB/TrEMBL;Acc:F7EYC0]
ENSCJAG00000032138	KNOWN_BY_PROJECTION	protein_coding	TMEM37	chromosome:C_jacchus3.2.1:6:1:158406734:1	93488657	93497827	D	transmembrane protein 37 [Source:HGNC Symbol;Acc:HGNC:18216]
ENSCJAG00000021438	KNOWN_BY_PROJECTION	protein_coding	SCTR	chromosome:C_jacchus3.2.1:6:1:158406734:1	93499277	93580953	R	secretin receptor [Source:HGNC Symbol;Acc:HGNC:10608]
ENSCJAG00000021440	KNOWN_BY_PROJECTION	protein_coding	CFAP221	chromosome:C_jacchus3.2.1:6:1:158406734:1	93602467	93715311	D	cilia and flagella associated protein 221 [Source:HGNC Symbol;Acc:HGNC:33720]
ENSCJAG00000031205	NOVEL	protein_coding	ENSCJAG00000031205	chromosome:C_jacchus3.2.1:6:1:158406734:1	93669623	93670012	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047996}  [Source:UniProtKB/TrEMBL;Acc:F7D3A9]
ENSCJAG00000018900	KNOWN	protein_coding	TMEM177	chromosome:C_jacchus3.2.1:6:1:158406734:1	93731226	93734177	D	Transmembrane protein 177 {ECO:0000313|EMBL:JAB10586.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000035092}  [Source:UniProtKB/TrEMBL;Acc:F7I6M8]
ENSCJAG00000013214	KNOWN	protein_coding	PTPN4	chromosome:C_jacchus3.2.1:6:1:158406734:1	93815840	94042483	D	Tyrosine-protein phosphatase non-receptor type {ECO:0000256|PIRNR:PIRNR000927}  [Source:UniProtKB/TrEMBL;Acc:F7GY33]
ENSCJAG00000013274	NOVEL	pseudogene	ENSCJAG00000013274	chromosome:C_jacchus3.2.1:6:1:158406734:1	94022337	94022825	D	<no descrition>
ENSCJAG00000013283	KNOWN	protein_coding	EPB41L5	chromosome:C_jacchus3.2.1:6:1:158406734:1	94087138	94230897	D	Band 4.1-like protein 5 isoform 3 {ECO:0000313|EMBL:JAB06136.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024433}  [Source:UniProtKB/TrEMBL;Acc:F7EX16]
ENSCJAG00000013326	KNOWN	protein_coding	RALB	chromosome:C_jacchus3.2.1:6:1:158406734:1	94306326	94362172	D	Ras-related protein Ral-B {ECO:0000313|EMBL:JAB09679.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024491}  [Source:UniProtKB/TrEMBL;Acc:F7HIT8]
ENSCJAG00000013341	NOVEL	pseudogene	ENSCJAG00000013341	chromosome:C_jacchus3.2.1:6:1:158406734:1	94418357	94419137	D	<no descrition>
ENSCJAG00000013342	NOVEL	protein_coding	ENSCJAG00000013342	chromosome:C_jacchus3.2.1:6:1:158406734:1	95025377	95066990	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024501}  [Source:UniProtKB/TrEMBL;Acc:F7H2X0]
ENSCJAG00000013356	KNOWN	protein_coding	TFCP2L1	chromosome:C_jacchus3.2.1:6:1:158406734:1	95321882	95392514	R	Transcription factor CP2-like protein 1 {ECO:0000313|EMBL:JAB05880.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024579}  [Source:UniProtKB/TrEMBL;Acc:F7G0J7]
ENSCJAG00000013398	KNOWN	protein_coding	CLASP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	95363156	95749670	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024819}  [Source:UniProtKB/TrEMBL;Acc:F6PMI8]
ENSCJAG00000013391	NOVEL	pseudogene	ENSCJAG00000013391	chromosome:C_jacchus3.2.1:6:1:158406734:1	95367236	95367627	D	<no descrition>
ENSCJAG00000013531	NOVEL	pseudogene	ENSCJAG00000013531	chromosome:C_jacchus3.2.1:6:1:158406734:1	95644519	95646169	R	<no descrition>
ENSCJAG00000002234	NOVEL	protein_coding	ENSCJAG00000002234	chromosome:C_jacchus3.2.1:6:1:158406734:1	95708301	95737614	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004013}  [Source:UniProtKB/TrEMBL;Acc:F6YR63]
ENSCJAG00000031153	NOVEL	pseudogene	ENSCJAG00000031153	chromosome:C_jacchus3.2.1:6:1:158406734:1	95780367	95780818	D	<no descrition>
ENSCJAG00000005344	NOVEL	protein_coding	ENSCJAG00000005344	chromosome:C_jacchus3.2.1:6:1:158406734:1	95783715	95785298	D	Perilipin {ECO:0000256|PIRNR:PIRNR036881}  [Source:UniProtKB/TrEMBL;Acc:F7IJ36]
ENSCJAG00000032423	NOVEL	pseudogene	ENSCJAG00000032423	chromosome:C_jacchus3.2.1:6:1:158406734:1	95786322	95786646	D	<no descrition>
ENSCJAG00000013386	KNOWN	protein_coding	NIFK	chromosome:C_jacchus3.2.1:6:1:158406734:1	95809313	95820304	R	MKI67 FHA domain-interacting nucleolar phosphoprotein {ECO:0000313|EMBL:JAB04058.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024596}  [Source:UniProtKB/TrEMBL;Acc:F7F9F4]
ENSCJAG00000033856	NOVEL	protein_coding	ENSCJAG00000033856	chromosome:C_jacchus3.2.1:6:1:158406734:1	95823682	95824428	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045081}  [Source:UniProtKB/TrEMBL;Acc:F6T8A3]
ENSCJAG00000018447	KNOWN	protein_coding	CNTNAP5	chromosome:C_jacchus3.2.1:6:1:158406734:1	98086386	98977900	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000034223}  [Source:UniProtKB/TrEMBL;Acc:F7CP95]
ENSCJAG00000018468	KNOWN_BY_PROJECTION	protein_coding	GYPC	chromosome:C_jacchus3.2.1:6:1:158406734:1	100879246	100881777	D	glycophorin C (Gerbich blood group) [Source:HGNC Symbol;Acc:HGNC:4704]
ENSCJAG00000032853	NOVEL	pseudogene	ENSCJAG00000032853	chromosome:C_jacchus3.2.1:6:1:158406734:1	101328623	101329074	R	<no descrition>
ENSCJAG00000005931	KNOWN	protein_coding	ZC3H15	chromosome:C_jacchus3.2.1:6:1:158406734:1	101558086	101580305	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010969}; Zinc finger CCCH domain-containing protein 15 {ECO:0000313|EMBL:JAB26643.1}  [Source:UniProtKB/TrEMBL;Acc:F7ICX4]
ENSCJAG00000005883	KNOWN_BY_PROJECTION	protein_coding	ITGAV	chromosome:C_jacchus3.2.1:6:1:158406734:1	101661203	101753175	D	integrin, alpha V [Source:HGNC Symbol;Acc:HGNC:6150]
ENSCJAG00000005876	KNOWN_BY_PROJECTION	protein_coding	FAM171B	chromosome:C_jacchus3.2.1:6:1:158406734:1	101768685	101852625	D	family with sequence similarity 171, member B [Source:HGNC Symbol;Acc:HGNC:29412]
ENSCJAG00000005861	KNOWN_BY_PROJECTION	protein_coding	ZSWIM2	chromosome:C_jacchus3.2.1:6:1:158406734:1	101916052	101958218	R	zinc finger, SWIM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:30990]
ENSCJAG00000005853	NOVEL	pseudogene	ENSCJAG00000005853	chromosome:C_jacchus3.2.1:6:1:158406734:1	102277001	102277770	D	<no descrition>
ENSCJAG00000005823	KNOWN_BY_PROJECTION	protein_coding	CALCRL	chromosome:C_jacchus3.2.1:6:1:158406734:1	102528045	102630517	R	calcitonin receptor-like [Source:HGNC Symbol;Acc:HGNC:16709]
ENSCJAG00000031578	NOVEL	protein_coding	ENSCJAG00000031578	chromosome:C_jacchus3.2.1:6:1:158406734:1	102650051	102669831	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045037}  [Source:UniProtKB/TrEMBL;Acc:F6TUU7]
ENSCJAG00000005816	NOVEL	protein_coding	ENSCJAG00000005816	chromosome:C_jacchus3.2.1:6:1:158406734:1	102670885	102693973	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010682}  [Source:UniProtKB/TrEMBL;Acc:F7HMY0]
ENSCJAG00000032683	NOVEL	protein_coding	ENSCJAG00000032683	chromosome:C_jacchus3.2.1:6:1:158406734:1	102709277	102710816	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042127}  [Source:UniProtKB/TrEMBL;Acc:F6VST1]
ENSCJAG00000005197	KNOWN	protein_coding	GULP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	103458750	103794878	D	PTB domain-containing engulfment adapter protein 1 isoform a {ECO:0000313|EMBL:JAB06089.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049477}  [Source:UniProtKB/TrEMBL;Acc:F7AG72]
ENSCJAG00000005209	NOVEL	pseudogene	ENSCJAG00000005209	chromosome:C_jacchus3.2.1:6:1:158406734:1	103954299	103954585	R	<no descrition>
ENSCJAG00000005210	KNOWN	protein_coding	COL3A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	104198930	104238471	D	Collagen alpha-1(III) chain preproprotein {ECO:0000313|EMBL:JAB02673.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009654}  [Source:UniProtKB/TrEMBL;Acc:F7FL95]
ENSCJAG00000005283	KNOWN_BY_PROJECTION	protein_coding	COL5A2	chromosome:C_jacchus3.2.1:6:1:158406734:1	104255550	104407312	R	collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
ENSCJAG00000005423	NOVEL	protein_coding	ENSCJAG00000005423	chromosome:C_jacchus3.2.1:6:1:158406734:1	104588445	104589131	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009897}  [Source:UniProtKB/TrEMBL;Acc:F7F687]
ENSCJAG00000005427	KNOWN_BY_PROJECTION	protein_coding	WDR75	chromosome:C_jacchus3.2.1:6:1:158406734:1	104612977	104644737	D	WD repeat domain 75 [Source:HGNC Symbol;Acc:HGNC:25725]
ENSCJAG00000005498	KNOWN	protein_coding	SLC40A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	104733292	104752701	R	Solute carrier family 40 member 1 {ECO:0000313|EMBL:JAB05708.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010170}  [Source:UniProtKB/TrEMBL;Acc:F6XNS8]
ENSCJAG00000005573	NOVEL	protein_coding	ENSCJAG00000005573	chromosome:C_jacchus3.2.1:6:1:158406734:1	104836509	104846355	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010179}  [Source:UniProtKB/TrEMBL;Acc:F6XND5]
ENSCJAG00000005579	KNOWN	protein_coding	ENSCJAG00000005579	chromosome:C_jacchus3.2.1:6:1:158406734:1	104892041	104906767	R	ORM1-like protein 1 {ECO:0000313|EMBL:JAB09778.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000036073}  [Source:UniProtKB/TrEMBL;Acc:F7FQP7]
ENSCJAG00000005590	KNOWN	protein_coding	PMS1	chromosome:C_jacchus3.2.1:6:1:158406734:1	104906482	104998964	D	PMS1 protein homolog 1 isoform a {ECO:0000313|EMBL:JAB49354.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050098}  [Source:UniProtKB/TrEMBL;Acc:F7F052]
ENSCJAG00000005664	KNOWN_BY_PROJECTION	protein_coding	MSTN	chromosome:C_jacchus3.2.1:6:1:158406734:1	105067761	105195818	R	myostatin [Source:HGNC Symbol;Acc:HGNC:4223]
ENSCJAG00000005673	KNOWN	protein_coding	C2ORF88	chromosome:C_jacchus3.2.1:6:1:158406734:1	105327155	105362276	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010403}; Uncharacterized protein FLJ90687 {ECO:0000313|EMBL:JAB02253.1}  [Source:UniProtKB/TrEMBL;Acc:F7HZ56]
ENSCJAG00000005679	KNOWN	protein_coding	HIBCH	chromosome:C_jacchus3.2.1:6:1:158406734:1	105366713	105483468	R	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial isoform 1 {ECO:0000313|EMBL:JAB03381.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044228}  [Source:UniProtKB/TrEMBL;Acc:F7E1A3]
ENSCJAG00000005706	KNOWN	protein_coding	INPP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	105509565	105541693	D	Inositol polyphosphate 1-phosphatase {ECO:0000313|EMBL:JAB02053.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010481}  [Source:UniProtKB/TrEMBL;Acc:F7ISD4]
ENSCJAG00000005724	NOVEL	protein_coding	ENSCJAG00000005724	chromosome:C_jacchus3.2.1:6:1:158406734:1	105572208	105573609	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010497}  [Source:UniProtKB/TrEMBL;Acc:F7IQ11]
ENSCJAG00000005733	KNOWN	protein_coding	MFSD6	chromosome:C_jacchus3.2.1:6:1:158406734:1	105613337	105678126	D	Major facilitator superfamily domain-containing protein 6 {ECO:0000313|EMBL:JAB10881.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010521}  [Source:UniProtKB/TrEMBL;Acc:F7IHY6]
ENSCJAG00000005743	KNOWN	protein_coding	TMEM194B	chromosome:C_jacchus3.2.1:6:1:158406734:1	105684876	105714250	R	Transmembrane protein 194B {ECO:0000313|EMBL:JAB04704.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010536}  [Source:UniProtKB/TrEMBL;Acc:F7IFN4]
ENSCJAG00000005748	KNOWN	protein_coding	NAB1	chromosome:C_jacchus3.2.1:6:1:158406734:1	105845319	105891013	D	NGFI-A-binding protein 1 {ECO:0000313|EMBL:JAB05751.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010572}  [Source:UniProtKB/TrEMBL;Acc:F7IAX5]
ENSCJAG00000005763	KNOWN_BY_PROJECTION	protein_coding	GLS	chromosome:C_jacchus3.2.1:6:1:158406734:1	106090010	106170437	D	glutaminase [Source:HGNC Symbol;Acc:HGNC:4331]
ENSCJAG00000005819	KNOWN	protein_coding	STAT1	chromosome:C_jacchus3.2.1:6:1:158406734:1	106175599	106217317	R	Signal transducer and activator of transcription {ECO:0000256|RuleBase:RU046415}  [Source:UniProtKB/TrEMBL;Acc:F7I183]
ENSCJAG00000033838	NOVEL	protein_coding	ENSCJAG00000033838	chromosome:C_jacchus3.2.1:6:1:158406734:1	106198918	106199528	R	<no descrition>
ENSCJAG00000005895	KNOWN_BY_PROJECTION	protein_coding	STAT4	chromosome:C_jacchus3.2.1:6:1:158406734:1	106232526	106344103	R	signal transducer and activator of transcription 4 [Source:HGNC Symbol;Acc:HGNC:11365]
ENSCJAG00000003371	NOVEL	protein_coding	ENSCJAG00000003371	chromosome:C_jacchus3.2.1:6:1:158406734:1	106419385	106429018	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006126}  [Source:UniProtKB/TrEMBL;Acc:F7F5C1]
ENSCJAG00000003380	KNOWN	protein_coding	MYO1B	chromosome:C_jacchus3.2.1:6:1:158406734:1	106537680	106725330	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047210}; Unconventional myosin-Ib isoform 2 {ECO:0000313|EMBL:JAB09020.1}  [Source:UniProtKB/TrEMBL;Acc:F7IKM9]
ENSCJAG00000003464	NOVEL	protein_coding	ENSCJAG00000003464	chromosome:C_jacchus3.2.1:6:1:158406734:1	106825377	106826431	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006290}  [Source:UniProtKB/TrEMBL;Acc:F7G948]
ENSCJAG00000003468	KNOWN	protein_coding	NABP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	107003069	107012062	D	SOSS complex subunit B2 isoform 1 {ECO:0000313|EMBL:JAB09139.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006311}  [Source:UniProtKB/TrEMBL;Acc:F7F543]
ENSCJAG00000003477	KNOWN	protein_coding	SDPR	chromosome:C_jacchus3.2.1:6:1:158406734:1	107157696	107170566	R	Serum deprivation-response protein {ECO:0000313|EMBL:JAB11492.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006321}  [Source:UniProtKB/TrEMBL;Acc:F7F4U8]
ENSCJAG00000003484	KNOWN_BY_PROJECTION	protein_coding	TMEFF2	chromosome:C_jacchus3.2.1:6:1:158406734:1	107273655	107525593	R	transmembrane protein with EGF-like and two follistatin-like domains 2 [Source:HGNC Symbol;Acc:HGNC:11867]
ENSCJAG00000003527	NOVEL	protein_coding	ENSCJAG00000003527	chromosome:C_jacchus3.2.1:6:1:158406734:1	108476630	108477701	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006393}  [Source:UniProtKB/TrEMBL;Acc:F7D0L3]
ENSCJAG00000033869	NOVEL	protein_coding	ENSCJAG00000033869	chromosome:C_jacchus3.2.1:6:1:158406734:1	109192123	109193393	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000045462}  [Source:UniProtKB/TrEMBL;Acc:F6Q4J1]
ENSCJAG00000032498	NOVEL	pseudogene	ENSCJAG00000032498	chromosome:C_jacchus3.2.1:6:1:158406734:1	110441089	110441276	R	<no descrition>
ENSCJAG00000032569	NOVEL	protein_coding	ENSCJAG00000032569	chromosome:C_jacchus3.2.1:6:1:158406734:1	110470482	110471427	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042773}  [Source:UniProtKB/TrEMBL;Acc:F6UH72]
ENSCJAG00000033773	NOVEL	pseudogene	ENSCJAG00000033773	chromosome:C_jacchus3.2.1:6:1:158406734:1	110569672	110570469	D	<no descrition>
ENSCJAG00000003534	KNOWN_BY_PROJECTION	protein_coding	SLC39A10	chromosome:C_jacchus3.2.1:6:1:158406734:1	110805702	110990520	D	solute carrier family 39 (zinc transporter), member 10 [Source:HGNC Symbol;Acc:HGNC:20861]
ENSCJAG00000011915	NOVEL	protein_coding	ENSCJAG00000011915	chromosome:C_jacchus3.2.1:6:1:158406734:1	110895865	110896350	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044427}  [Source:UniProtKB/TrEMBL;Acc:F7DJ53]
ENSCJAG00000033251	NOVEL	protein_coding	ENSCJAG00000033251	chromosome:C_jacchus3.2.1:6:1:158406734:1	110990543	111100875	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049597}  [Source:UniProtKB/TrEMBL;Acc:F6UT04]
ENSCJAG00000003569	NOVEL	protein_coding	ENSCJAG00000003569	chromosome:C_jacchus3.2.1:6:1:158406734:1	111160591	111344298	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006505}  [Source:UniProtKB/TrEMBL;Acc:F7FHD4]
ENSCJAG00000003591	KNOWN	protein_coding	STK17B	chromosome:C_jacchus3.2.1:6:1:158406734:1	111427935	111465098	R	Serine/threonine-protein kinase 17B {ECO:0000313|EMBL:JAB09504.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006533}  [Source:UniProtKB/TrEMBL;Acc:F7F3X9]
ENSCJAG00000003608	KNOWN_BY_PROJECTION	protein_coding	HECW2	chromosome:C_jacchus3.2.1:6:1:158406734:1	111488667	111892262	R	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:29853]
ENSCJAG00000003683	KNOWN_BY_PROJECTION	protein_coding	CCDC150	chromosome:C_jacchus3.2.1:6:1:158406734:1	111994401	112040257	D	coiled-coil domain containing 150 [Source:HGNC Symbol;Acc:HGNC:26834]
ENSCJAG00000003694	KNOWN	protein_coding	GTF3C3	chromosome:C_jacchus3.2.1:6:1:158406734:1	112065182	112109898	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006773}  [Source:UniProtKB/TrEMBL;Acc:F7EP79]
ENSCJAG00000003749	KNOWN	protein_coding	PGAP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	112147518	112232386	R	GPI inositol-deacylase {ECO:0000313|EMBL:JAB17727.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000006890}  [Source:UniProtKB/TrEMBL;Acc:F7HG28]
ENSCJAG00000003803	KNOWN	protein_coding	ANKRD44	chromosome:C_jacchus3.2.1:6:1:158406734:1	112297430	112519153	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007068}  [Source:UniProtKB/TrEMBL;Acc:F6TTZ2]
ENSCJAG00000003900	NOVEL	protein_coding	ENSCJAG00000003900	chromosome:C_jacchus3.2.1:6:1:158406734:1	112604468	112605034	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007088}  [Source:UniProtKB/TrEMBL;Acc:F6TGR9]
ENSCJAG00000003902	KNOWN	protein_coding	SF3B1	chromosome:C_jacchus3.2.1:6:1:158406734:1	112703528	112747494	R	Splicing factor 3B subunit 1 isoform 2 {ECO:0000313|EMBL:JAB09833.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051135}  [Source:UniProtKB/TrEMBL;Acc:F6ZKH9]
ENSCJAG00000003971	KNOWN	protein_coding	COQ10B	chromosome:C_jacchus3.2.1:6:1:158406734:1	112762883	112784150	D	Coenzyme Q-binding protein COQ10 homolog B, mitochondrial {ECO:0000313|EMBL:JAB10136.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007231}  [Source:UniProtKB/TrEMBL;Acc:F6PJ77]
ENSCJAG00000003990	KNOWN	protein_coding	HSPD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	112797823	112811028	R	60 kDa heat shock protein, mitochondrial {ECO:0000313|EMBL:JAB21108.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046765}  [Source:UniProtKB/TrEMBL;Acc:F7I3J9]
ENSCJAG00000004008	KNOWN	protein_coding	ENSCJAG00000004008	chromosome:C_jacchus3.2.1:6:1:158406734:1	112810752	112814008	D	10 kDa heat shock protein, mitochondrial {ECO:0000313|EMBL:JAB06863.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007298}  [Source:UniProtKB/TrEMBL;Acc:F6T494]
ENSCJAG00000004020	KNOWN	protein_coding	MOB4	chromosome:C_jacchus3.2.1:6:1:158406734:1	112831051	112870085	D	MOB-like protein phocein isoform 3 {ECO:0000313|EMBL:JAB03655.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050491}  [Source:UniProtKB/TrEMBL;Acc:F7GYJ8]
ENSCJAG00000004062	KNOWN	protein_coding	RFTN2	chromosome:C_jacchus3.2.1:6:1:158406734:1	112895874	112960292	R	Raftlin-2 {ECO:0000313|EMBL:JAB09431.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007425}  [Source:UniProtKB/TrEMBL;Acc:F6PHM8]
ENSCJAG00000022885	NOVEL	pseudogene	ENSCJAG00000022885	chromosome:C_jacchus3.2.1:6:1:158406734:1	112983022	112985147	D	<no descrition>
ENSCJAG00000004092	KNOWN_BY_PROJECTION	protein_coding	BOLL	chromosome:C_jacchus3.2.1:6:1:158406734:1	113002495	113074196	R	boule-like RNA-binding protein [Source:HGNC Symbol;Acc:HGNC:14273]
ENSCJAG00000032653	NOVEL	protein_coding	ENSCJAG00000032653	chromosome:C_jacchus3.2.1:6:1:158406734:1	113059533	113061650	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044349}  [Source:UniProtKB/TrEMBL;Acc:F7FXR1]
ENSCJAG00000004100	KNOWN_BY_PROJECTION	protein_coding	PLCL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	113418303	113483257	D	phospholipase C-like 1 [Source:HGNC Symbol;Acc:HGNC:9063]
ENSCJAG00000004111	KNOWN	protein_coding	SATB2	chromosome:C_jacchus3.2.1:6:1:158406734:1	114554295	114758401	R	DNA-binding protein SATB {ECO:0000256|RuleBase:RU361129}  [Source:UniProtKB/TrEMBL;Acc:F6S562]
ENSCJAG00000004149	KNOWN	protein_coding	C2ORF69	chromosome:C_jacchus3.2.1:6:1:158406734:1	115213141	115256405	D	UPF0565 protein C2orf69 {ECO:0000313|EMBL:JAB32290.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044595}  [Source:UniProtKB/TrEMBL;Acc:F7FHY5]
ENSCJAG00000004155	KNOWN_BY_PROJECTION	protein_coding	TYW5	chromosome:C_jacchus3.2.1:6:1:158406734:1	115233351	115255972	R	tRNA-yW synthesizing protein 5 [Source:HGNC Symbol;Acc:HGNC:26754]
ENSCJAG00000037075	KNOWN	protein_coding	C2ORF47	chromosome:C_jacchus3.2.1:6:1:158406734:1	115255968	115264928	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000007565}; Uncharacterized protein C2orf47, mitochondrial {ECO:0000313|EMBL:JAB23202.1}  [Source:UniProtKB/TrEMBL;Acc:F6R7M7]
ENSCJAG00000004173	KNOWN	protein_coding	SPATS2L	chromosome:C_jacchus3.2.1:6:1:158406734:1	115619489	115794512	D	SPATS2-like protein isoform b {ECO:0000313|EMBL:JAB09065.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043723}  [Source:UniProtKB/TrEMBL;Acc:F7HVW5]
ENSCJAG00000031173	KNOWN_BY_PROJECTION	protein_coding	KCTD18	chromosome:C_jacchus3.2.1:6:1:158406734:1	115821461	115827489	R	potassium channel tetramerization domain containing 18 [Source:HGNC Symbol;Acc:HGNC:26446]
ENSCJAG00000004216	KNOWN_BY_PROJECTION	protein_coding	SGOL2	chromosome:C_jacchus3.2.1:6:1:158406734:1	115844097	115899728	D	shugoshin-like 2 (S. pombe) [Source:HGNC Symbol;Acc:HGNC:30812]
ENSCJAG00000004230	KNOWN_BY_PROJECTION	protein_coding	AOX1	chromosome:C_jacchus3.2.1:6:1:158406734:1	115915657	116005433	D	aldehyde oxidase 1 [Source:HGNC Symbol;Acc:HGNC:553]
ENSCJAG00000033419	NOVEL	protein_coding	ENSCJAG00000033419	chromosome:C_jacchus3.2.1:6:1:158406734:1	116213341	116296895	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019173}  [Source:UniProtKB/TrEMBL;Acc:F6QQM5]
ENSCJAG00000004408	KNOWN	protein_coding	ORC2	chromosome:C_jacchus3.2.1:6:1:158406734:1	116314868	116483175	R	Origin recognition complex subunit 2 {ECO:0000313|EMBL:JAB04892.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008066}  [Source:UniProtKB/TrEMBL;Acc:F6YS51]
ENSCJAG00000004267	KNOWN_BY_PROJECTION	protein_coding	BZW1	chromosome:C_jacchus3.2.1:6:1:158406734:1	116315106	116329947	D	basic leucine zipper and W2 domains 1 [Source:HGNC Symbol;Acc:HGNC:18380]
ENSCJAG00000004319	KNOWN	protein_coding	CLK1	chromosome:C_jacchus3.2.1:6:1:158406734:1	116364447	116405549	R	Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}  [Source:UniProtKB/TrEMBL;Acc:F7IMM5]
ENSCJAG00000004400	KNOWN	protein_coding	NIF3L1	chromosome:C_jacchus3.2.1:6:1:158406734:1	116405602	116421538	D	Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}  [Source:UniProtKB/TrEMBL;Acc:F6S431]
ENSCJAG00000004465	KNOWN	protein_coding	FAM126B	chromosome:C_jacchus3.2.1:6:1:158406734:1	116499911	116581334	R	Protein FAM126B {ECO:0000313|EMBL:JAB03915.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008135}  [Source:UniProtKB/TrEMBL;Acc:F7HU60]
ENSCJAG00000004495	NOVEL	protein_coding	ENSCJAG00000004495	chromosome:C_jacchus3.2.1:6:1:158406734:1	116573559	116576233	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008139}  [Source:UniProtKB/TrEMBL;Acc:F7HU52]
ENSCJAG00000004496	KNOWN	protein_coding	NDUFB3	chromosome:C_jacchus3.2.1:6:1:158406734:1	116581404	116591995	D	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 {ECO:0000313|EMBL:JAB10123.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008151}  [Source:UniProtKB/TrEMBL;Acc:F7HNF8]
ENSCJAG00000004505	KNOWN	protein_coding	CFLAR	chromosome:C_jacchus3.2.1:6:1:158406734:1	116629595	116671654	D	CASP8 and FADD-like apoptosis regulator isoform 1 {ECO:0000313|EMBL:JAB16943.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049563}  [Source:UniProtKB/TrEMBL;Acc:F6VES3]
ENSCJAG00000004540	KNOWN	protein_coding	CASP10	chromosome:C_jacchus3.2.1:6:1:158406734:1	116692467	116728751	D	Caspase-10 isoform 1 preproprotein {ECO:0000313|EMBL:JAB05475.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008232}  [Source:UniProtKB/TrEMBL;Acc:F7IFK8]
ENSCJAG00000004551	KNOWN_BY_PROJECTION	protein_coding	CASP8	chromosome:C_jacchus3.2.1:6:1:158406734:1	116744952	116803183	D	caspase 8, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:1509]
ENSCJAG00000004558	KNOWN_BY_PROJECTION	protein_coding	ALS2CR12	chromosome:C_jacchus3.2.1:6:1:158406734:1	116804685	116845613	R	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 [Source:HGNC Symbol;Acc:HGNC:14439]
ENSCJAG00000004568	KNOWN	protein_coding	TRAK2	chromosome:C_jacchus3.2.1:6:1:158406734:1	116859142	116927261	R	Trafficking kinesin-binding protein 2 {ECO:0000313|EMBL:JAB03863.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047576}  [Source:UniProtKB/TrEMBL;Acc:F7DNV2]
ENSCJAG00000004658	NOVEL	protein_coding	ENSCJAG00000004658	chromosome:C_jacchus3.2.1:6:1:158406734:1	116900086	116901079	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008431}  [Source:UniProtKB/TrEMBL;Acc:F7IFG3]
ENSCJAG00000004661	KNOWN	protein_coding	STRADB	chromosome:C_jacchus3.2.1:6:1:158406734:1	116927341	116958667	D	STE20-related kinase adapter protein beta isoform 1 {ECO:0000313|EMBL:JAB02051.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049096}  [Source:UniProtKB/TrEMBL;Acc:F6W484]
ENSCJAG00000004698	KNOWN_BY_PROJECTION	protein_coding	ALS2CR11	chromosome:C_jacchus3.2.1:6:1:158406734:1	116983832	117201433	R	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 [Source:HGNC Symbol;Acc:HGNC:14438]
ENSCJAG00000035086	NOVEL	pseudogene	ENSCJAG00000035086	chromosome:C_jacchus3.2.1:6:1:158406734:1	117060624	117063622	R	<no descrition>
ENSCJAG00000004720	KNOWN_BY_PROJECTION	protein_coding	TMEM237	chromosome:C_jacchus3.2.1:6:1:158406734:1	117207783	117231453	R	transmembrane protein 237 [Source:HGNC Symbol;Acc:HGNC:14432]
ENSCJAG00000004750	KNOWN_BY_PROJECTION	protein_coding	MPP4	chromosome:C_jacchus3.2.1:6:1:158406734:1	117233542	117287981	R	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) [Source:HGNC Symbol;Acc:HGNC:13680]
ENSCJAG00000004769	KNOWN	protein_coding	ALS2	chromosome:C_jacchus3.2.1:6:1:158406734:1	117289874	117371579	R	Alsin isoform 2 {ECO:0000313|EMBL:JAB52137.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000043893}  [Source:UniProtKB/TrEMBL;Acc:F7I573]
ENSCJAG00000004892	KNOWN_BY_PROJECTION	protein_coding	CDK15	chromosome:C_jacchus3.2.1:6:1:158406734:1	117396443	117484401	D	cyclin-dependent kinase 15 [Source:HGNC Symbol;Acc:HGNC:14434]
ENSCJAG00000004923	KNOWN_BY_PROJECTION	protein_coding	KIAA2012	chromosome:C_jacchus3.2.1:6:1:158406734:1	117676637	117768177	D	KIAA2012 [Source:HGNC Symbol;Acc:HGNC:51250]
ENSCJAG00000037443	NOVEL	protein_coding	ENSCJAG00000037443	chromosome:C_jacchus3.2.1:6:1:158406734:1	117750435	117806118	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000008998}  [Source:UniProtKB/TrEMBL;Acc:F7I3B2]
ENSCJAG00000004961	KNOWN	protein_coding	SUMO1	chromosome:C_jacchus3.2.1:6:1:158406734:1	117815219	117851467	R	Small ubiquitin-related modifier 1 isoform a {ECO:0000313|EMBL:JAB04772.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009094}  [Source:UniProtKB/TrEMBL;Acc:F7HZB5]
ENSCJAG00000004985	KNOWN	protein_coding	NOP58	chromosome:C_jacchus3.2.1:6:1:158406734:1	117872810	117914120	D	Nucleolar protein 58 {ECO:0000313|EMBL:JAB04411.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009229}  [Source:UniProtKB/TrEMBL;Acc:F7IB06]
ENSCJAG00000005066	KNOWN_BY_PROJECTION	protein_coding	BMPR2	chromosome:C_jacchus3.2.1:6:1:158406734:1	118065912	118155199	D	bone morphogenetic protein receptor, type II (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:1078]
ENSCJAG00000005134	NOVEL	pseudogene	ENSCJAG00000005134	chromosome:C_jacchus3.2.1:6:1:158406734:1	118099329	118099975	D	<no descrition>
ENSCJAG00000005139	KNOWN_BY_PROJECTION	protein_coding	FAM117B	chromosome:C_jacchus3.2.1:6:1:158406734:1	118231526	118356611	D	family with sequence similarity 117, member B [Source:HGNC Symbol;Acc:HGNC:14440]
ENSCJAG00000005162	KNOWN	protein_coding	ICA1L	chromosome:C_jacchus3.2.1:6:1:158406734:1	118361940	118440842	R	Islet cell autoantigen 1-like protein isoform 1 {ECO:0000313|EMBL:JAB20765.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009428}  [Source:UniProtKB/TrEMBL;Acc:F7GCI6]
ENSCJAG00000005171	KNOWN	protein_coding	WDR12	chromosome:C_jacchus3.2.1:6:1:158406734:1	118451471	118481696	R	Ribosome biogenesis protein WDR12 {ECO:0000256|HAMAP-Rule:MF_03029}  [Source:UniProtKB/TrEMBL;Acc:F7D4Y2]
ENSCJAG00000005224	KNOWN	protein_coding	CARF	chromosome:C_jacchus3.2.1:6:1:158406734:1	118481725	118709857	D	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein {ECO:0000313|EMBL:JAB14464.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047718}  [Source:UniProtKB/TrEMBL;Acc:F7F8F5]
ENSCJAG00000005266	NOVEL	protein_coding	ENSCJAG00000005266	chromosome:C_jacchus3.2.1:6:1:158406734:1	118607526	118651143	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009632}  [Source:UniProtKB/TrEMBL;Acc:F7FZN2]
ENSCJAG00000005278	NOVEL	protein_coding	ENSCJAG00000005278	chromosome:C_jacchus3.2.1:6:1:158406734:1	118649813	118651104	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009651}  [Source:UniProtKB/TrEMBL;Acc:F7FLC3]
ENSCJAG00000031696	KNOWN_BY_PROJECTION	protein_coding	NBEAL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	118663229	118808591	D	neurobeachin-like 1 [Source:HGNC Symbol;Acc:HGNC:20681]
ENSCJAG00000005279	NOVEL	protein_coding	ENSCJAG00000005279	chromosome:C_jacchus3.2.1:6:1:158406734:1	118899318	118909311	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009652}  [Source:UniProtKB/TrEMBL;Acc:F7FLB8]
ENSCJAG00000022886	NOVEL	pseudogene	ENSCJAG00000022886	chromosome:C_jacchus3.2.1:6:1:158406734:1	118911907	118913905	D	<no descrition>
ENSCJAG00000005281	KNOWN	protein_coding	CYP20A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	119002895	119059001	D	Cytochrome P450 20A1 {ECO:0000313|EMBL:JAB02249.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000009748}  [Source:UniProtKB/TrEMBL;Acc:F7GWW9]
ENSCJAG00000005399	KNOWN	protein_coding	ABI2	chromosome:C_jacchus3.2.1:6:1:158406734:1	119087860	119204183	D	Abl interactor 2 {ECO:0000313|EMBL:JAB06661.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047933}  [Source:UniProtKB/TrEMBL;Acc:F7EFN7]
ENSCJAG00000005339	KNOWN_BY_PROJECTION	protein_coding	RAPH1	chromosome:C_jacchus3.2.1:6:1:158406734:1	119213511	119302948	R	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:14436]
ENSCJAG00000032735	NOVEL	protein_coding	ENSCJAG00000032735	chromosome:C_jacchus3.2.1:6:1:158406734:1	119411374	119412516	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052183}  [Source:UniProtKB/TrEMBL;Acc:F7HXZ5]
ENSCJAG00000005457	KNOWN	protein_coding	CD28	chromosome:C_jacchus3.2.1:6:1:158406734:1	119482152	119513300	D	Callithrix jacchus CD28 molecule (CD28), mRNA. [Source:RefSeq mRNA;Acc:NM_001257219]
ENSCJAG00000005493	NOVEL	protein_coding	ENSCJAG00000005493	chromosome:C_jacchus3.2.1:6:1:158406734:1	119547337	119548257	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010022}  [Source:UniProtKB/TrEMBL;Acc:F7CQB1]
ENSCJAG00000005495	KNOWN_BY_PROJECTION	protein_coding	CTLA4	chromosome:C_jacchus3.2.1:6:1:158406734:1	119658528	119663666	D	cytotoxic T-lymphocyte-associated protein 4 [Source:HGNC Symbol;Acc:HGNC:2505]
ENSCJAG00000005516	KNOWN_BY_PROJECTION	protein_coding	ICOS	chromosome:C_jacchus3.2.1:6:1:158406734:1	119738218	119762312	D	inducible T-cell co-stimulator [Source:HGNC Symbol;Acc:HGNC:5351]
ENSCJAG00000005521	KNOWN_BY_PROJECTION	protein_coding	PARD3B	chromosome:C_jacchus3.2.1:6:1:158406734:1	120812113	121513263	D	par-3 family cell polarity regulator beta [Source:HGNC Symbol;Acc:HGNC:14446]
ENSCJAG00000005577	KNOWN	protein_coding	NRP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	121579620	121701903	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028974}  [Source:UniProtKB/TrEMBL;Acc:F7B3L5]
ENSCJAG00000005678	NOVEL	pseudogene	ENSCJAG00000005678	chromosome:C_jacchus3.2.1:6:1:158406734:1	121746389	121746659	D	<no descrition>
ENSCJAG00000005682	KNOWN_BY_PROJECTION	protein_coding	INO80D	chromosome:C_jacchus3.2.1:6:1:158406734:1	121928741	122008638	R	INO80 complex subunit D [Source:HGNC Symbol;Acc:HGNC:25997]
ENSCJAG00000005725	KNOWN_BY_PROJECTION	protein_coding	NDUFS1	chromosome:C_jacchus3.2.1:6:1:158406734:1	122037842	122081011	R	NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:HGNC:7707]
ENSCJAG00000005805	KNOWN	protein_coding	ENSCJAG00000005805	chromosome:C_jacchus3.2.1:6:1:158406734:1	122081180	122084565	D	Elongation factor 1-beta {ECO:0000313|EMBL:JAB07006.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050631}  [Source:UniProtKB/TrEMBL;Acc:F7GY27]
ENSCJAG00000022889	KNOWN_BY_PROJECTION	protein_coding	GPR1	chromosome:C_jacchus3.2.1:6:1:158406734:1	122094431	122142229	R	G protein-coupled receptor 1 [Source:HGNC Symbol;Acc:HGNC:4463]
ENSCJAG00000005812	KNOWN_BY_PROJECTION	protein_coding	ZDBF2	chromosome:C_jacchus3.2.1:6:1:158406734:1	122211345	122259771	D	zinc finger, DBF-type containing 2 [Source:HGNC Symbol;Acc:HGNC:29313]
ENSCJAG00000005821	KNOWN	protein_coding	ADAM23	chromosome:C_jacchus3.2.1:6:1:158406734:1	122351489	122522679	D	Disintegrin and metalloproteinase domain-containing protein 23 preproprotein {ECO:0000313|EMBL:JAB18493.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010863}  [Source:UniProtKB/TrEMBL;Acc:F7HTE8]
ENSCJAG00000005924	KNOWN	protein_coding	ENSCJAG00000005924	chromosome:C_jacchus3.2.1:6:1:158406734:1	122548779	122555501	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000010890}; Uncharacterized protein LOC200726 {ECO:0000313|EMBL:JAB27877.1}  [Source:UniProtKB/TrEMBL;Acc:F7IS26]
ENSCJAG00000005926	KNOWN_BY_PROJECTION	protein_coding	DYTN	chromosome:C_jacchus3.2.1:6:1:158406734:1	122557657	122622695	R	dystrotelin [Source:HGNC Symbol;Acc:HGNC:23279]
ENSCJAG00000031555	NOVEL	pseudogene	ENSCJAG00000031555	chromosome:C_jacchus3.2.1:6:1:158406734:1	122638351	122639042	D	<no descrition>
ENSCJAG00000005953	KNOWN_BY_PROJECTION	protein_coding	MDH1B	chromosome:C_jacchus3.2.1:6:1:158406734:1	122644169	122678839	R	malate dehydrogenase 1B, NAD (soluble) [Source:HGNC Symbol;Acc:HGNC:17836]
ENSCJAG00000005971	KNOWN_BY_PROJECTION	protein_coding	FASTKD2	chromosome:C_jacchus3.2.1:6:1:158406734:1	122679833	122710915	D	FAST kinase domains 2 [Source:HGNC Symbol;Acc:HGNC:29160]
ENSCJAG00000005991	KNOWN_BY_PROJECTION	protein_coding	CPO	chromosome:C_jacchus3.2.1:6:1:158406734:1	122858931	122888374	D	carboxypeptidase O [Source:HGNC Symbol;Acc:HGNC:21011]
ENSCJAG00000006023	KNOWN	protein_coding	KLF7	chromosome:C_jacchus3.2.1:6:1:158406734:1	122984776	123073260	R	Krueppel-like factor 7 isoform 1 {ECO:0000313|EMBL:JAB09040.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050315}  [Source:UniProtKB/TrEMBL;Acc:F7GTJ0]
ENSCJAG00000006039	KNOWN	protein_coding	CREB1	chromosome:C_jacchus3.2.1:6:1:158406734:1	123511430	123557677	D	Cyclic AMP-responsive element-binding protein 1 isoform B {ECO:0000313|EMBL:JAB16947.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046607}  [Source:UniProtKB/TrEMBL;Acc:F7HN54]
ENSCJAG00000006072	KNOWN	protein_coding	METTL21A	chromosome:C_jacchus3.2.1:6:1:158406734:1	123568080	123587678	R	Methyltransferase-like protein 21A {ECO:0000313|EMBL:JAB05124.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011168}  [Source:UniProtKB/TrEMBL;Acc:F7HZJ6]
ENSCJAG00000006081	NOVEL	protein_coding	ENSCJAG00000006081	chromosome:C_jacchus3.2.1:6:1:158406734:1	123649070	123651977	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000011180}  [Source:UniProtKB/TrEMBL;Acc:F7HZE9]
ENSCJAG00000002901	KNOWN	protein_coding	CCNYL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	123672184	123718879	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005259}  [Source:UniProtKB/TrEMBL;Acc:F7HYI9]
ENSCJAG00000022490	KNOWN_BY_PROJECTION	protein_coding	FZD5	chromosome:C_jacchus3.2.1:6:1:158406734:1	123731350	123734718	R	frizzled class receptor 5 [Source:HGNC Symbol;Acc:HGNC:4043]
ENSCJAG00000002896	KNOWN	protein_coding	PLEKHM3	chromosome:C_jacchus3.2.1:6:1:158406734:1	123810413	124022410	R	Pleckstrin homology domain-containing family M member 3 {ECO:0000313|EMBL:JAB05800.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005254}  [Source:UniProtKB/TrEMBL;Acc:F7HYJ4]
ENSCJAG00000034472	NOVEL	pseudogene	ENSCJAG00000034472	chromosome:C_jacchus3.2.1:6:1:158406734:1	124027570	124027907	R	<no descrition>
ENSCJAG00000002892	KNOWN_BY_PROJECTION	protein_coding	CRYGD	chromosome:C_jacchus3.2.1:6:1:158406734:1	124115361	124118228	R	crystallin, gamma D [Source:HGNC Symbol;Acc:HGNC:2411]
ENSCJAG00000002876	KNOWN_BY_PROJECTION	protein_coding	CRYGB	chromosome:C_jacchus3.2.1:6:1:158406734:1	124126447	124149836	R	crystallin, gamma B [Source:HGNC Symbol;Acc:HGNC:2409]
ENSCJAG00000002880	NOVEL	protein_coding	ENSCJAG00000002880	chromosome:C_jacchus3.2.1:6:1:158406734:1	124136497	124139406	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005235}  [Source:UniProtKB/TrEMBL;Acc:F7I0W9]
ENSCJAG00000002875	KNOWN_BY_PROJECTION	protein_coding	CRYGA	chromosome:C_jacchus3.2.1:6:1:158406734:1	124164299	124167565	R	crystallin, gamma A [Source:HGNC Symbol;Acc:HGNC:2408]
ENSCJAG00000002855	KNOWN_BY_PROJECTION	protein_coding	C2orf80	chromosome:C_jacchus3.2.1:6:1:158406734:1	124169860	124193951	R	chromosome 2 open reading frame 80 [Source:HGNC Symbol;Acc:HGNC:34352]
ENSCJAG00000002853	NOVEL	pseudogene	ENSCJAG00000002853	chromosome:C_jacchus3.2.1:6:1:158406734:1	124207316	124207656	D	<no descrition>
ENSCJAG00000002828	NOVEL	protein_coding	ENSCJAG00000002828	chromosome:C_jacchus3.2.1:6:1:158406734:1	124215430	124234359	R	Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}  [Source:UniProtKB/TrEMBL;Acc:F7ICK0]
ENSCJAG00000002759	KNOWN	protein_coding	PIKFYVE	chromosome:C_jacchus3.2.1:6:1:158406734:1	124252199	124335508	D	1-phosphatidylinositol 3-phosphate 5-kinase isoform 2 {ECO:0000313|EMBL:JAB29549.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005116}  [Source:UniProtKB/TrEMBL;Acc:F7IM12]
ENSCJAG00000002825	NOVEL	pseudogene	ENSCJAG00000002825	chromosome:C_jacchus3.2.1:6:1:158406734:1	124255539	124256156	R	<no descrition>
ENSCJAG00000002758	NOVEL	pseudogene	ENSCJAG00000002758	chromosome:C_jacchus3.2.1:6:1:158406734:1	124450243	124450727	R	<no descrition>
ENSCJAG00000002754	NOVEL	protein_coding	ENSCJAG00000002754	chromosome:C_jacchus3.2.1:6:1:158406734:1	124457740	124491746	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000005001}  [Source:UniProtKB/TrEMBL;Acc:F7I3C1]
ENSCJAG00000002750	NOVEL	protein_coding	ENSCJAG00000002750	chromosome:C_jacchus3.2.1:6:1:158406734:1	124715111	124716690	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004991}  [Source:UniProtKB/TrEMBL;Acc:F7C214]
ENSCJAG00000002749	NOVEL	protein_coding	ENSCJAG00000002749	chromosome:C_jacchus3.2.1:6:1:158406734:1	125066362	125068728	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004985}  [Source:UniProtKB/TrEMBL;Acc:F7C2G1]
ENSCJAG00000002739	KNOWN_BY_PROJECTION	protein_coding	OSGEPL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	125187257	125197107	D	O-sialoglycoprotein endopeptidase-like 1 [Source:HGNC Symbol;Acc:HGNC:23075]
ENSCJAG00000002726	NOVEL	protein_coding	ENSCJAG00000002726	chromosome:C_jacchus3.2.1:6:1:158406734:1	125200110	125224418	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004967}  [Source:UniProtKB/TrEMBL;Acc:F7CHE1]
ENSCJAG00000002713	NOVEL	protein_coding	ENSCJAG00000002713	chromosome:C_jacchus3.2.1:6:1:158406734:1	125254121	125277950	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000004941}  [Source:UniProtKB/TrEMBL;Acc:F6UDM2]
ENSCJAG00000010628	NOVEL	protein_coding	ENSCJAG00000010628	chromosome:C_jacchus3.2.1:6:1:158406734:1	125335874	125344040	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019615}  [Source:UniProtKB/TrEMBL;Acc:F6PGP5]
ENSCJAG00000010653	KNOWN_BY_PROJECTION	protein_coding	SMPD4	chromosome:C_jacchus3.2.1:6:1:158406734:1	125367594	125396240	D	sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) [Source:HGNC Symbol;Acc:HGNC:32949]
ENSCJAG00000010676	NOVEL	protein_coding	ENSCJAG00000010676	chromosome:C_jacchus3.2.1:6:1:158406734:1	125399110	125404174	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019678}  [Source:UniProtKB/TrEMBL;Acc:F6SR95]
ENSCJAG00000010689	KNOWN	protein_coding	MAP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	125553400	125861707	D	Microtubule-associated protein {ECO:0000256|RuleBase:RU000686}  [Source:UniProtKB/TrEMBL;Acc:F7C7S9]
ENSCJAG00000010773	KNOWN_BY_PROJECTION	protein_coding	UNC80	chromosome:C_jacchus3.2.1:6:1:158406734:1	125913292	126142269	D	unc-80 homolog (C. elegans) [Source:HGNC Symbol;Acc:HGNC:26582]
ENSCJAG00000010822	KNOWN	protein_coding	RPE	chromosome:C_jacchus3.2.1:6:1:158406734:1	126144406	126158881	D	Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}  [Source:UniProtKB/TrEMBL;Acc:F6YQT5]
ENSCJAG00000010851	KNOWN_BY_PROJECTION	protein_coding	KANSL1L	chromosome:C_jacchus3.2.1:6:1:158406734:1	126159756	126293648	R	KAT8 regulatory NSL complex subunit 1-like [Source:HGNC Symbol;Acc:HGNC:26310]
ENSCJAG00000010915	KNOWN_BY_PROJECTION	protein_coding	ACADL	chromosome:C_jacchus3.2.1:6:1:158406734:1	126344803	126366034	R	acyl-CoA dehydrogenase, long chain [Source:HGNC Symbol;Acc:HGNC:88]
ENSCJAG00000010924	KNOWN	protein_coding	MYL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	126449207	126481382	R	Myosin light chain 1/3, skeletal muscle isoform isoform 3f {ECO:0000313|EMBL:JAB23406.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020174}  [Source:UniProtKB/TrEMBL;Acc:F7GB39]
ENSCJAG00000010949	KNOWN	protein_coding	LANCL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	126561740	126604751	R	LanC-like protein 1 {ECO:0000313|EMBL:JAB09690.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020260}  [Source:UniProtKB/TrEMBL;Acc:F7EEA2]
ENSCJAG00000010985	KNOWN_BY_PROJECTION	protein_coding	CPS1	chromosome:C_jacchus3.2.1:6:1:158406734:1	126606154	126795911	D	carbamoyl-phosphate synthase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:2323]
ENSCJAG00000011307	KNOWN_BY_PROJECTION	protein_coding	ERBB4	chromosome:C_jacchus3.2.1:6:1:158406734:1	127477155	128061985	R	erb-b2 receptor tyrosine kinase 4 [Source:HGNC Symbol;Acc:HGNC:3432]
ENSCJAG00000032289	NOVEL	protein_coding	ENSCJAG00000032289	chromosome:C_jacchus3.2.1:6:1:158406734:1	128283718	128284443	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051187}  [Source:UniProtKB/TrEMBL;Acc:F6Z306]
ENSCJAG00000011409	KNOWN	protein_coding	IKZF2	chromosome:C_jacchus3.2.1:6:1:158406734:1	129144098	129313035	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021043}; Zinc finger protein Helios isoform 1 {ECO:0000313|EMBL:JAB09048.1}  [Source:UniProtKB/TrEMBL;Acc:F6PLI9]
ENSCJAG00000036269	NOVEL	protein_coding	ENSCJAG00000036269	chromosome:C_jacchus3.2.1:6:1:158406734:1	129144838	129227945	R	<no descrition>
ENSCJAG00000011448	KNOWN_BY_PROJECTION	protein_coding	SPAG16	chromosome:C_jacchus3.2.1:6:1:158406734:1	129446881	129694174	D	sperm associated antigen 16 [Source:HGNC Symbol;Acc:HGNC:23225]
ENSCJAG00000011456	KNOWN	protein_coding	TSGA10	chromosome:C_jacchus3.2.1:6:1:158406734:1	129975577	130079078	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021073}  [Source:UniProtKB/TrEMBL;Acc:F6TVE6]
ENSCJAG00000011463	NOVEL	protein_coding	ENSCJAG00000011463	chromosome:C_jacchus3.2.1:6:1:158406734:1	130101028	130101245	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021075}  [Source:UniProtKB/TrEMBL;Acc:F6TVD8]
ENSCJAG00000011465	KNOWN	protein_coding	VWC2L	chromosome:C_jacchus3.2.1:6:1:158406734:1	130716556	130888018	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021091}; von Willebrand factor C domain-containing protein 2-like {ECO:0000313|EMBL:JAB16258.1}  [Source:UniProtKB/TrEMBL;Acc:F6TJC5]
ENSCJAG00000011472	NOVEL	pseudogene	ENSCJAG00000011472	chromosome:C_jacchus3.2.1:6:1:158406734:1	131020965	131021253	D	<no descrition>
ENSCJAG00000011473	KNOWN_BY_PROJECTION	protein_coding	BARD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	131047733	131136376	R	BRCA1 associated RING domain 1 [Source:HGNC Symbol;Acc:HGNC:952]
ENSCJAG00000011510	KNOWN_BY_PROJECTION	protein_coding	ABCA12	chromosome:C_jacchus3.2.1:6:1:158406734:1	131254133	131471563	R	ATP-binding cassette, sub-family A (ABC1), member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
ENSCJAG00000011695	KNOWN_BY_PROJECTION	protein_coding	ATIC	chromosome:C_jacchus3.2.1:6:1:158406734:1	131652389	131689442	D	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Source:HGNC Symbol;Acc:HGNC:794]
ENSCJAG00000011714	KNOWN	protein_coding	FN1	chromosome:C_jacchus3.2.1:6:1:158406734:1	131700480	131778187	R	Fibronectin isoform 1 preproprotein {ECO:0000313|EMBL:JAB26488.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022457}  [Source:UniProtKB/TrEMBL;Acc:F7ISE9]
ENSCJAG00000037790	KNOWN	protein_coding	MREG	chromosome:C_jacchus3.2.1:6:1:158406734:1	132300261	132379609	R	Melanoregulin {ECO:0000313|EMBL:JAB23591.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000016511}  [Source:UniProtKB/TrEMBL;Acc:F7CJJ2]
ENSCJAG00000012258	KNOWN	protein_coding	PECR	chromosome:C_jacchus3.2.1:6:1:158406734:1	132359240	132459739	R	Peroxisomal trans-2-enoyl-CoA reductase {ECO:0000313|EMBL:JAB01904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000018018}  [Source:UniProtKB/TrEMBL;Acc:F7H1M5]
ENSCJAG00000031891	NOVEL	protein_coding	ENSCJAG00000031891	chromosome:C_jacchus3.2.1:6:1:158406734:1	132393867	132394680	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000044468}  [Source:UniProtKB/TrEMBL;Acc:F7HBU5]
ENSCJAG00000012287	KNOWN	protein_coding	TMEM169	chromosome:C_jacchus3.2.1:6:1:158406734:1	132459852	132474641	D	Transmembrane protein 169 {ECO:0000313|EMBL:JAB23251.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022506}  [Source:UniProtKB/TrEMBL;Acc:F7IHX4]
ENSCJAG00000012291	KNOWN	protein_coding	XRCC5	chromosome:C_jacchus3.2.1:6:1:158406734:1	132485351	132581282	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022642}; X-ray repair cross-complementing protein 5 {ECO:0000313|EMBL:JAB19135.1}  [Source:UniProtKB/TrEMBL;Acc:F7HTR0]
ENSCJAG00000012374	KNOWN	protein_coding	MARCH4	chromosome:C_jacchus3.2.1:6:1:158406734:1	132620670	132732047	R	E3 ubiquitin-protein ligase MARCH4 {ECO:0000313|EMBL:JAB14480.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022653}  [Source:UniProtKB/TrEMBL;Acc:F7HN37]
ENSCJAG00000012377	KNOWN_BY_PROJECTION	protein_coding	SMARCAL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	132775716	132840813	D	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:HGNC Symbol;Acc:HGNC:11102]
ENSCJAG00000012417	NOVEL	protein_coding	ENSCJAG00000012417	chromosome:C_jacchus3.2.1:6:1:158406734:1	132854736	132857288	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022738}  [Source:UniProtKB/TrEMBL;Acc:F7ID25]
ENSCJAG00000012426	KNOWN_BY_PROJECTION	protein_coding	IGFBP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	132995157	133023254	D	insulin-like growth factor binding protein 2, 36kDa [Source:HGNC Symbol;Acc:HGNC:5471]
ENSCJAG00000012444	KNOWN	protein_coding	IGFBP5	chromosome:C_jacchus3.2.1:6:1:158406734:1	133033797	133053510	R	Insulin-like growth factor-binding protein 5 {ECO:0000313|EMBL:JAB06380.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022804}  [Source:UniProtKB/TrEMBL;Acc:F7HYX2]
ENSCJAG00000012458	KNOWN	protein_coding	TNP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	133215684	133216245	R	Spermatid nuclear transition protein 1 {ECO:0000313|EMBL:JAB01688.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022810}  [Source:UniProtKB/TrEMBL;Acc:F7HYU9]
ENSCJAG00000012465	NOVEL	protein_coding	ENSCJAG00000012465	chromosome:C_jacchus3.2.1:6:1:158406734:1	133228720	133229557	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022819}  [Source:UniProtKB/TrEMBL;Acc:F7HWK3]
ENSCJAG00000033297	NOVEL	protein_coding	ENSCJAG00000033297	chromosome:C_jacchus3.2.1:6:1:158406734:1	133327249	133328980	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050019}  [Source:UniProtKB/TrEMBL;Acc:F7FS29]
ENSCJAG00000012466	NOVEL	protein_coding	ENSCJAG00000012466	chromosome:C_jacchus3.2.1:6:1:158406734:1	134049614	134050770	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022826}  [Source:UniProtKB/TrEMBL;Acc:F7HWI3]
ENSCJAG00000018487	KNOWN_BY_PROJECTION	protein_coding	TNS1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134207857	134304316	R	tensin 1 [Source:HGNC Symbol;Acc:HGNC:11973]
ENSCJAG00000018480	KNOWN_BY_PROJECTION	protein_coding	RUFY4	chromosome:C_jacchus3.2.1:6:1:158406734:1	134421010	134472155	D	RUN and FYVE domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24804]
ENSCJAG00000000744	KNOWN_BY_PROJECTION	protein_coding	CXCR2	chromosome:C_jacchus3.2.1:6:1:158406734:1	134484362	134494028	D	chemokine (C-X-C motif) receptor 2 [Source:HGNC Symbol;Acc:HGNC:6027]
ENSCJAG00000010738	KNOWN_BY_PROJECTION	protein_coding	CXCR1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134528427	134532276	R	chemokine (C-X-C motif) receptor 1 [Source:HGNC Symbol;Acc:HGNC:6026]
ENSCJAG00000010744	NOVEL	protein_coding	ENSCJAG00000010744	chromosome:C_jacchus3.2.1:6:1:158406734:1	134562880	134563502	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019790}  [Source:UniProtKB/TrEMBL;Acc:F6WD49]
ENSCJAG00000010746	KNOWN	protein_coding	ARPC2	chromosome:C_jacchus3.2.1:6:1:158406734:1	134577461	134614127	D	Actin-related protein 2/3 complex subunit 2 {ECO:0000313|EMBL:JAB19021.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019884}  [Source:UniProtKB/TrEMBL;Acc:F7BT00]
ENSCJAG00000010820	KNOWN	protein_coding	PNKD	chromosome:C_jacchus3.2.1:6:1:158406734:1	134612569	134710630	D	Putative hydrolase PNKD isoform 1 {ECO:0000313|EMBL:JAB16209.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019990}  [Source:UniProtKB/TrEMBL;Acc:F6YQM1]
ENSCJAG00000022440	KNOWN	protein_coding	GPBAR1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134619111	134624461	D	G-protein coupled bile acid receptor 1 {ECO:0000313|EMBL:JAB10434.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000041062}  [Source:UniProtKB/TrEMBL;Acc:F7FGI7]
ENSCJAG00000010793	KNOWN	protein_coding	AAMP	chromosome:C_jacchus3.2.1:6:1:158406734:1	134625044	134630870	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000019927}  [Source:UniProtKB/TrEMBL;Acc:F6Z9A4]
ENSCJAG00000010850	KNOWN	protein_coding	TMBIM1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134635047	134648267	R	Protein lifeguard 3 {ECO:0000313|EMBL:JAB11832.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020047}  [Source:UniProtKB/TrEMBL;Acc:F7D3T4]
ENSCJAG00000010885	KNOWN_BY_PROJECTION	protein_coding	CATIP	chromosome:C_jacchus3.2.1:6:1:158406734:1	134724591	134737722	D	ciliogenesis associated TTC17 interacting protein [Source:HGNC Symbol;Acc:HGNC:25062]
ENSCJAG00000010901	KNOWN	protein_coding	SLC11A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134755038	134772036	D	Natural resistance-associated macrophage protein 1 {ECO:0000313|EMBL:JAB27204.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020145}  [Source:UniProtKB/TrEMBL;Acc:F7GRK1]
ENSCJAG00000010930	KNOWN	protein_coding	CTDSP1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134774955	134781027	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000049949}  [Source:UniProtKB/TrEMBL;Acc:F7CAP3]
ENSCJAG00000010950	KNOWN_BY_PROJECTION	protein_coding	VIL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134796200	135002241	D	villin 1 [Source:HGNC Symbol;Acc:HGNC:12690]
ENSCJAG00000010983	KNOWN_BY_PROJECTION	protein_coding	USP37	chromosome:C_jacchus3.2.1:6:1:158406734:1	134831090	134930931	R	ubiquitin specific peptidase 37 [Source:HGNC Symbol;Acc:HGNC:20063]
ENSCJAG00000011079	KNOWN	protein_coding	RQCD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	134941039	134966539	D	Cell differentiation protein RCD1 homolog isoform 2 {ECO:0000313|EMBL:JAB03509.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020478}  [Source:UniProtKB/TrEMBL;Acc:F7D1V8]
ENSCJAG00000011145	KNOWN_BY_PROJECTION	protein_coding	ZNF142	chromosome:C_jacchus3.2.1:6:1:158406734:1	135014732	135028680	R	zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
ENSCJAG00000011149	KNOWN	protein_coding	BCS1L	chromosome:C_jacchus3.2.1:6:1:158406734:1	135031291	135035052	D	Mitochondrial chaperone BCS1 {ECO:0000313|EMBL:JAB09843.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020608}  [Source:UniProtKB/TrEMBL;Acc:F7F510]
ENSCJAG00000011192	KNOWN	protein_coding	RNF25	chromosome:C_jacchus3.2.1:6:1:158406734:1	135035472	135043790	R	E3 ubiquitin-protein ligase RNF25 {ECO:0000313|EMBL:JAB26586.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020682}  [Source:UniProtKB/TrEMBL;Acc:F7D0Q2]
ENSCJAG00000011237	KNOWN	protein_coding	STK36	chromosome:C_jacchus3.2.1:6:1:158406734:1	135043771	135075694	D	Serine/threonine-protein kinase 36 isoform 1 {ECO:0000313|EMBL:JAB06591.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020775}  [Source:UniProtKB/TrEMBL;Acc:F7GJJ9]
ENSCJAG00000011294	KNOWN_BY_PROJECTION	protein_coding	TTLL4	chromosome:C_jacchus3.2.1:6:1:158406734:1	135109735	135138799	D	tubulin tyrosine ligase-like family member 4 [Source:HGNC Symbol;Acc:HGNC:28976]
ENSCJAG00000011342	KNOWN	protein_coding	CYP27A1	chromosome:C_jacchus3.2.1:6:1:158406734:1	135151206	135182610	D	Sterol 26-hydroxylase, mitochondrial {ECO:0000313|EMBL:JAB13690.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000020871}  [Source:UniProtKB/TrEMBL;Acc:F7DY05]
ENSCJAG00000011362	KNOWN_BY_PROJECTION	protein_coding	PRKAG3	chromosome:C_jacchus3.2.1:6:1:158406734:1	135190692	135391023	R	protein kinase, AMP-activated, gamma 3 non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9387]
ENSCJAG00000019830	NOVEL	protein_coding	ENSCJAG00000019830	chromosome:C_jacchus3.2.1:6:1:158406734:1	135214991	135215980	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051692}  [Source:UniProtKB/TrEMBL;Acc:F6XVD2]
ENSCJAG00000011399	KNOWN	protein_coding	WNT6	chromosome:C_jacchus3.2.1:6:1:158406734:1	135234760	135250477	D	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F7H0T0]
ENSCJAG00000011403	KNOWN	protein_coding	WNT10A	chromosome:C_jacchus3.2.1:6:1:158406734:1	135256931	135270942	D	Protein Wnt {ECO:0000256|RuleBase:RU003500}  [Source:UniProtKB/TrEMBL;Acc:F7GQE8]
ENSCJAG00000011416	NOVEL	pseudogene	ENSCJAG00000011416	chromosome:C_jacchus3.2.1:6:1:158406734:1	135326840	135327419	R	<no descrition>
ENSCJAG00000011417	NOVEL	pseudogene	ENSCJAG00000011417	chromosome:C_jacchus3.2.1:6:1:158406734:1	135333365	135335855	D	<no descrition>
ENSCJAG00000011419	KNOWN_BY_PROJECTION	protein_coding	FEV	chromosome:C_jacchus3.2.1:6:1:158406734:1	135355640	135360321	R	FEV (ETS oncogene family) [Source:HGNC Symbol;Acc:HGNC:18562]
ENSCJAG00000011426	KNOWN_BY_PROJECTION	protein_coding	CRYBA2	chromosome:C_jacchus3.2.1:6:1:158406734:1	135366141	135369667	R	crystallin, beta A2 [Source:HGNC Symbol;Acc:HGNC:2395]
ENSCJAG00000011429	KNOWN_BY_PROJECTION	protein_coding	CCDC108	chromosome:C_jacchus3.2.1:6:1:158406734:1	135379050	135426282	R	coiled-coil domain containing 108 [Source:HGNC Symbol;Acc:HGNC:25325]
ENSCJAG00000011469	KNOWN_BY_PROJECTION	protein_coding	IHH	chromosome:C_jacchus3.2.1:6:1:158406734:1	135439008	135445036	R	indian hedgehog [Source:HGNC Symbol;Acc:HGNC:5956]
ENSCJAG00000011471	KNOWN	protein_coding	NHEJ1	chromosome:C_jacchus3.2.1:6:1:158406734:1	135462144	135551594	R	Non-homologous end-joining factor 1 {ECO:0000313|EMBL:JAB04928.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021097}  [Source:UniProtKB/TrEMBL;Acc:F6TJ74]
ENSCJAG00000011478	KNOWN_BY_PROJECTION	protein_coding	SLC23A3	chromosome:C_jacchus3.2.1:6:1:158406734:1	135555507	135564900	R	solute carrier family 23, member 3 [Source:HGNC Symbol;Acc:HGNC:20601]
ENSCJAG00000011492	KNOWN	protein_coding	CNPPD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	135566672	135572575	R	Protein CNPPD1 {ECO:0000313|EMBL:JAB05657.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046097}  [Source:UniProtKB/TrEMBL;Acc:F6YU24]
ENSCJAG00000011500	KNOWN_BY_PROJECTION	protein_coding	FAM134A	chromosome:C_jacchus3.2.1:6:1:158406734:1	135579506	135582990	D	family with sequence similarity 134, member A [Source:HGNC Symbol;Acc:HGNC:28450]
ENSCJAG00000011433	KNOWN_BY_PROJECTION	protein_coding	GLB1L	chromosome:C_jacchus3.2.1:6:1:158406734:1	135595939	135648341	R	galactosidase, beta 1-like [Source:HGNC Symbol;Acc:HGNC:28129]
ENSCJAG00000011503	KNOWN	protein_coding	ZFAND2B	chromosome:C_jacchus3.2.1:6:1:158406734:1	135603490	135606307	D	AN1-type zinc finger protein 2B isoform 1 {ECO:0000313|EMBL:JAB03167.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021159}  [Source:UniProtKB/TrEMBL;Acc:F6SLQ0]
ENSCJAG00000011512	KNOWN_BY_PROJECTION	protein_coding	ABCB6	chromosome:C_jacchus3.2.1:6:1:158406734:1	135607208	135615356	R	ATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group) [Source:HGNC Symbol;Acc:HGNC:47]
ENSCJAG00000011523	KNOWN	protein_coding	ATG9A	chromosome:C_jacchus3.2.1:6:1:158406734:1	135616183	135627115	R	Autophagy-related protein 9A {ECO:0000313|EMBL:JAB05263.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050267}  [Source:UniProtKB/TrEMBL;Acc:F7EZ70]
ENSCJAG00000011574	KNOWN	protein_coding	ANKZF1	chromosome:C_jacchus3.2.1:6:1:158406734:1	135627233	135634741	D	Ankyrin repeat and zinc finger domain-containing protein 1 {ECO:0000313|EMBL:JAB06819.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021283}  [Source:UniProtKB/TrEMBL;Acc:F6QSL5]
ENSCJAG00000011592	KNOWN	protein_coding	STK16	chromosome:C_jacchus3.2.1:6:1:158406734:1	135648442	135653468	D	Serine/threonine kinase 16, isoform 2 (Predicted) {ECO:0000313|EMBL:ABY89799.1}; Serine/threonine-protein kinase 16 {ECO:0000313|EMBL:JAB23012.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000051708}  [Source:UniProtKB/TrEMBL;Acc:B0KWI4]
ENSCJAG00000011645	KNOWN	protein_coding	TUBA4A	chromosome:C_jacchus3.2.1:6:1:158406734:1	135652844	135657721	R	Tubulin, alpha 4a (Predicted) {ECO:0000313|EMBL:ABY89800.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000038872}  [Source:UniProtKB/TrEMBL;Acc:B0KWI5]
ENSCJAG00000011658	NOVEL	protein_coding	TUBA1B	chromosome:C_jacchus3.2.1:6:1:158406734:1	135670069	135673844	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021417}  [Source:UniProtKB/TrEMBL;Acc:F6S8R5]
ENSCJAG00000011669	KNOWN	protein_coding	DNAJB2	chromosome:C_jacchus3.2.1:6:1:158406734:1	135686990	135693572	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021442}  [Source:UniProtKB/TrEMBL;Acc:F6RMH0]
ENSCJAG00000011681	KNOWN_BY_PROJECTION	protein_coding	PTPRN	chromosome:C_jacchus3.2.1:6:1:158406734:1	135696664	135718281	R	protein tyrosine phosphatase, receptor type, N [Source:HGNC Symbol;Acc:HGNC:9676]
ENSCJAG00000011728	KNOWN_BY_PROJECTION	protein_coding	RESP18	chromosome:C_jacchus3.2.1:6:1:158406734:1	135737102	135744147	R	regulated endocrine-specific protein 18 [Source:HGNC Symbol;Acc:HGNC:33762]
ENSCJAG00000033512	NOVEL	protein_coding	ENSCJAG00000033512	chromosome:C_jacchus3.2.1:6:1:158406734:1	135760536	135761947	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000046505}  [Source:UniProtKB/TrEMBL;Acc:F7IAW8]
ENSCJAG00000011753	KNOWN_BY_PROJECTION	protein_coding	DNPEP	chromosome:C_jacchus3.2.1:6:1:158406734:1	135783936	135808163	R	aspartyl aminopeptidase [Source:HGNC Symbol;Acc:HGNC:2981]
ENSCJAG00000011796	NOVEL	protein_coding	DES	chromosome:C_jacchus3.2.1:6:1:158406734:1	135827281	135834583	D	Desmin (Predicted) {ECO:0000313|EMBL:ABY89805.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021659}  [Source:UniProtKB/TrEMBL;Acc:B0KWJ0]
ENSCJAG00000011802	KNOWN_BY_PROJECTION	protein_coding	SPEG	chromosome:C_jacchus3.2.1:6:1:158406734:1	135843591	135908037	D	SPEG complex locus [Source:HGNC Symbol;Acc:HGNC:16901]
ENSCJAG00000011849	KNOWN	protein_coding	GMPPA	chromosome:C_jacchus3.2.1:6:1:158406734:1	135913291	135921261	D	GDP-mannose pyrophosphorylase A, isoform 2 (Predicted) {ECO:0000313|EMBL:ABY89807.1}; Mannose-1-phosphate guanyltransferase alpha {ECO:0000313|EMBL:JAB09082.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047106}  [Source:UniProtKB/TrEMBL;Acc:B0KWJ2]
ENSCJAG00000034484	NOVEL	protein_coding	ENSCJAG00000034484	chromosome:C_jacchus3.2.1:9:1:124281992:1	42612	55544	R	<no descrition>
ENSCJAG00000014860	NOVEL	protein_coding	ENSCJAG00000014860	chromosome:C_jacchus3.2.1:9:1:124281992:1	62461	79409	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027384}  [Source:UniProtKB/TrEMBL;Acc:F7HA77]
ENSCJAG00000014874	KNOWN_BY_PROJECTION	protein_coding	RAPGEF3	chromosome:C_jacchus3.2.1:9:1:124281992:1	91470	117031	R	Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
ENSCJAG00000011864	KNOWN	protein_coding	ASIC4	chromosome:C_jacchus3.2.1:6:1:158406734:1	135929995	135956416	D	Acid-sensing ion channel 4 {ECO:0000313|EMBL:JAB25918.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021832}  [Source:UniProtKB/TrEMBL;Acc:F6RUX3]
ENSCJAG00000011894	KNOWN	protein_coding	CHPF	chromosome:C_jacchus3.2.1:6:1:158406734:1	135956596	135961398	R	Chondroitin polymerizing factor (Predicted) {ECO:0000313|EMBL:ABY89809.1}; Chondroitin sulfate synthase 2 isoform 1 {ECO:0000313|EMBL:JAB06233.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021865}  [Source:UniProtKB/TrEMBL;Acc:B0KWJ4]
ENSCJAG00000011913	KNOWN	protein_coding	TMEM198	chromosome:C_jacchus3.2.1:6:1:158406734:1	135961647	135969588	D	Transmembrane protein 198 {ECO:0000313|EMBL:JAB09807.1}; Transmembrane protein 198 (Predicted) {ECO:0000313|EMBL:ABY89810.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021881}  [Source:UniProtKB/TrEMBL;Acc:B0KWJ5]
ENSCJAG00000011924	KNOWN	protein_coding	OBSL1	chromosome:C_jacchus3.2.1:6:1:158406734:1	135969754	135988970	R	Obscurin-like 1 (Predicted) {ECO:0000313|EMBL:ABY89811.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042967}  [Source:UniProtKB/TrEMBL;Acc:B0KWJ6]
ENSCJAG00000011934	KNOWN	protein_coding	INHA	chromosome:C_jacchus3.2.1:6:1:158406734:1	135992941	135996748	D	Inhibin alpha chain preproprotein {ECO:0000313|EMBL:JAB07864.1}; Inhibin alpha subunit (Predicted) {ECO:0000313|EMBL:ABY89812.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021899}  [Source:UniProtKB/TrEMBL;Acc:B0KWJ7]
ENSCJAG00000011938	NOVEL	protein_coding	STK11IP	chromosome:C_jacchus3.2.1:6:1:158406734:1	136013538	136034065	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000021921}  [Source:UniProtKB/TrEMBL;Acc:F6PGZ2]
ENSCJAG00000035122	NOVEL	pseudogene	ENSCJAG00000035122	chromosome:C_jacchus3.2.1:9:1:124281992:1	130023	130294	R	<no descrition>
ENSCJAG00000014975	KNOWN	protein_coding	SLC48A1	chromosome:C_jacchus3.2.1:9:1:124281992:1	130551	140680	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027573}  [Source:UniProtKB/TrEMBL;Acc:F7CU86]
ENSCJAG00000014979	KNOWN_BY_PROJECTION	protein_coding	HDAC7	chromosome:C_jacchus3.2.1:9:1:124281992:1	141767	163372	R	histone deacetylase 7 [Source:HGNC Symbol;Acc:HGNC:14067]
ENSCJAG00000011943	KNOWN_BY_PROJECTION	protein_coding	SLC4A3	chromosome:C_jacchus3.2.1:6:1:158406734:1	136045489	136060343	D	solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
ENSCJAG00000015017	NOVEL	pseudogene	ENSCJAG00000015017	chromosome:C_jacchus3.2.1:9:1:124281992:1	143192	143597	D	<no descrition>
ENSCJAG00000015018	KNOWN_BY_PROJECTION	protein_coding	VDR	chromosome:C_jacchus3.2.1:9:1:124281992:1	209086	276339	R	vitamin D (1,25- dihydroxyvitamin D3) receptor [Source:HGNC Symbol;Acc:HGNC:12679]
ENSCJAG00000015036	NOVEL	protein_coding	ENSCJAG00000015036	chromosome:C_jacchus3.2.1:9:1:124281992:1	268842	272014	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027697}  [Source:UniProtKB/TrEMBL;Acc:F7G4C2]
ENSCJAG00000015180	KNOWN	protein_coding	SENP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	321471	505207	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000028085}  [Source:UniProtKB/TrEMBL;Acc:F6UJV7]
ENSCJAG00000015040	KNOWN	protein_coding	TMEM106C	chromosome:C_jacchus3.2.1:9:1:124281992:1	352420	358659	D	Transmembrane protein 106C isoform a {ECO:0000313|EMBL:JAB07792.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000027730}  [Source:UniProtKB/TrEMBL;Acc:F7DTI0]
ENSCJAG00000015054	KNOWN_BY_PROJECTION	protein_coding	COL2A1	chromosome:C_jacchus3.2.1:9:1:124281992:1	362209	399311	R	collagen, type II, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2200]
ENSCJAG00000012031	NOVEL	pseudogene	ENSCJAG00000012031	chromosome:C_jacchus3.2.1:6:1:158406734:1	137647428	137647744	D	<no descrition>
ENSCJAG00000001417	NOVEL	pseudogene	ENSCJAG00000001417	chromosome:C_jacchus3.2.1:6:1:158406734:1	137870034	137870283	D	<no descrition>
ENSCJAG00000012036	KNOWN	protein_coding	EPHA4	chromosome:C_jacchus3.2.1:6:1:158406734:1	137881278	138038432	R	Ephrin type-A receptor 4 {ECO:0000313|EMBL:JAB15905.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000042079}  [Source:UniProtKB/TrEMBL;Acc:F6RGK7]
ENSCJAG00000012088	KNOWN_BY_PROJECTION	protein_coding	PAX3	chromosome:C_jacchus3.2.1:6:1:158406734:1	138684601	138784670	R	paired box 3 [Source:HGNC Symbol;Acc:HGNC:8617]
ENSCJAG00000012173	KNOWN_BY_PROJECTION	protein_coding	SGPP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	138906866	139056736	D	sphingosine-1-phosphate phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:19953]
ENSCJAG00000012181	KNOWN	protein_coding	FARSB	chromosome:C_jacchus3.2.1:6:1:158406734:1	139069693	139168925	R	Phenylalanine--tRNA ligase beta subunit {ECO:0000313|EMBL:JAB03401.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022510}  [Source:UniProtKB/TrEMBL;Acc:F7IFN1]
ENSCJAG00000012528	KNOWN_BY_PROJECTION	protein_coding	PFKM	chromosome:C_jacchus3.2.1:9:1:124281992:1	507232	554353	D	phosphofructokinase, muscle [Source:HGNC Symbol;Acc:HGNC:8877]
ENSCJAG00000012596	KNOWN	protein_coding	ASB8	chromosome:C_jacchus3.2.1:9:1:124281992:1	557579	567224	R	Ankyrin repeat and SOCS box protein 8 {ECO:0000313|EMBL:JAB02824.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023064}  [Source:UniProtKB/TrEMBL;Acc:F7IDL1]
ENSCJAG00000035314	NOVEL	protein_coding	ENSCJAG00000035314	chromosome:C_jacchus3.2.1:9:1:124281992:1	570080	571183	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000052275}  [Source:UniProtKB/TrEMBL;Acc:F7IGU6]
ENSCJAG00000012605	NOVEL	pseudogene	ENSCJAG00000012605	chromosome:C_jacchus3.2.1:9:1:124281992:1	589540	591299	D	<no descrition>
ENSCJAG00000012282	NOVEL	protein_coding	ENSCJAG00000012282	chromosome:C_jacchus3.2.1:9:1:124281992:1	634220	712346	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022546}  [Source:UniProtKB/TrEMBL;Acc:F7ID46]
ENSCJAG00000012293	KNOWN	protein_coding	MOGAT1	chromosome:C_jacchus3.2.1:6:1:158406734:1	139187636	139230770	D	2-acylglycerol O-acyltransferase 1 {ECO:0000313|EMBL:JAB09167.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022535}  [Source:UniProtKB/TrEMBL;Acc:F7ID79]
ENSCJAG00000012242	KNOWN_BY_PROJECTION	protein_coding	SLCO1C1	chromosome:C_jacchus3.2.1:9:1:124281992:1	745069	800236	R	solute carrier organic anion transporter family, member 1C1 [Source:HGNC Symbol;Acc:HGNC:13819]
ENSCJAG00000012308	KNOWN	protein_coding	ACSL3	chromosome:C_jacchus3.2.1:6:1:158406734:1	139381708	139456024	D	Long-chain-fatty-acid--CoA ligase 3 {ECO:0000313|EMBL:JAB11562.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000013667}  [Source:UniProtKB/TrEMBL;Acc:F7BGD7]
ENSCJAG00000012344	KNOWN_BY_PROJECTION	protein_coding	KCNE4	chromosome:C_jacchus3.2.1:6:1:158406734:1	139562656	139564654	D	potassium channel, voltage gated subfamily E regulatory beta subunit 4 [Source:HGNC Symbol;Acc:HGNC:6244]
ENSCJAG00000031403	NOVEL	pseudogene	ENSCJAG00000031403	chromosome:C_jacchus3.2.1:6:1:158406734:1	139896985	139897264	R	<no descrition>
ENSCJAG00000012345	KNOWN	protein_coding	SCG2	chromosome:C_jacchus3.2.1:6:1:158406734:1	140115304	140120747	R	Secretogranin-2 {ECO:0000313|EMBL:JAB46330.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022610}  [Source:UniProtKB/TrEMBL;Acc:F7HYZ5]
ENSCJAG00000012352	KNOWN	protein_coding	AP1S3	chromosome:C_jacchus3.2.1:6:1:158406734:1	140303238	140391039	R	AP-1 complex subunit sigma-3 {ECO:0000313|EMBL:JAB02730.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022627}  [Source:UniProtKB/TrEMBL;Acc:F7HWN6]
ENSCJAG00000012237	KNOWN_BY_PROJECTION	protein_coding	PDE3A	chromosome:C_jacchus3.2.1:9:1:124281992:1	817162	1146011	R	phosphodiesterase 3A, cGMP-inhibited [Source:HGNC Symbol;Acc:HGNC:8778]
ENSCJAG00000012362	KNOWN	protein_coding	WDFY1	chromosome:C_jacchus3.2.1:6:1:158406734:1	140429560	140500221	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022693}; WD repeat and FYVE domain-containing protein 1 {ECO:0000313|EMBL:JAB07536.1}  [Source:UniProtKB/TrEMBL;Acc:F7IMJ5]
ENSCJAG00000001342	KNOWN_BY_PROJECTION	protein_coding	AEBP2	chromosome:C_jacchus3.2.1:9:1:124281992:1	2056211	2130585	R	AE binding protein 2 [Source:HGNC Symbol;Acc:HGNC:24051]
ENSCJAG00000012401	KNOWN	protein_coding	MRPL44	chromosome:C_jacchus3.2.1:6:1:158406734:1	140512030	140522748	D	39S ribosomal protein L44, mitochondrial {ECO:0000313|EMBL:JAB11969.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000022708}  [Source:UniProtKB/TrEMBL;Acc:F7IHS9]
ENSCJAG00000012404	KNOWN_BY_PROJECTION	protein_coding	SERPINE2	chromosome:C_jacchus3.2.1:6:1:158406734:1	140532182	140598246	R	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 [Source:HGNC Symbol;Acc:HGNC:8951]
ENSCJAG00000001320	KNOWN_BY_PROJECTION	protein_coding	PLEKHA5	chromosome:C_jacchus3.2.1:9:1:124281992:1	2199347	2436726	R	pleckstrin homology domain containing, family A member 5 [Source:HGNC Symbol;Acc:HGNC:30036]
ENSCJAG00000012445	KNOWN_BY_PROJECTION	protein_coding	FAM124B	chromosome:C_jacchus3.2.1:6:1:158406734:1	140927876	140950337	R	family with sequence similarity 124B [Source:HGNC Symbol;Acc:HGNC:26224]
ENSCJAG00000012449	KNOWN	protein_coding	CUL3	chromosome:C_jacchus3.2.1:6:1:158406734:1	141032379	141141260	R	Cullin-3 isoform 1 {ECO:0000313|EMBL:JAB02421.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000047328}  [Source:UniProtKB/TrEMBL;Acc:F7I1N2]
ENSCJAG00000007242	KNOWN_BY_PROJECTION	protein_coding	PLCZ1	chromosome:C_jacchus3.2.1:9:1:124281992:1	2855451	2911527	D	phospholipase C, zeta 1 [Source:HGNC Symbol;Acc:HGNC:19218]
ENSCJAG00000012521	KNOWN_BY_PROJECTION	protein_coding	DOCK10	chromosome:C_jacchus3.2.1:6:1:158406734:1	141289626	141574851	R	dedicator of cytokinesis 10 [Source:HGNC Symbol;Acc:HGNC:23479]
ENSCJAG00000007208	KNOWN_BY_PROJECTION	protein_coding	PIK3C2G	chromosome:C_jacchus3.2.1:9:1:124281992:1	2945372	3358339	R	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
ENSCJAG00000007200	KNOWN_BY_PROJECTION	protein_coding	RERGL	chromosome:C_jacchus3.2.1:9:1:124281992:1	3493659	3502287	D	RERG/RAS-like [Source:HGNC Symbol;Acc:HGNC:26213]
ENSCJAG00000021589	KNOWN	protein_coding	LMO3	chromosome:C_jacchus3.2.1:9:1:124281992:1	4833627	4894247	D	LIM domain only protein 3 isoform 2 {ECO:0000313|EMBL:JAB16097.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050752}  [Source:UniProtKB/TrEMBL;Acc:F7D724]
ENSCJAG00000021590	KNOWN_BY_PROJECTION	protein_coding	MGST1	chromosome:C_jacchus3.2.1:9:1:124281992:1	5081298	5098443	R	microsomal glutathione S-transferase 1 [Source:HGNC Symbol;Acc:HGNC:7061]
ENSCJAG00000021591	KNOWN_BY_PROJECTION	protein_coding	SLC15A5	chromosome:C_jacchus3.2.1:9:1:124281992:1	5171483	5264404	D	solute carrier family 15, member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
ENSCJAG00000021592	KNOWN_BY_PROJECTION	protein_coding	DERA	chromosome:C_jacchus3.2.1:9:1:124281992:1	5433025	5559118	R	deoxyribose-phosphate aldolase (putative) [Source:HGNC Symbol;Acc:HGNC:24269]
ENSCJAG00000021593	KNOWN	protein_coding	STRAP	chromosome:C_jacchus3.2.1:9:1:124281992:1	5564006	5585765	R	Serine-threonine kinase receptor-associated protein {ECO:0000313|EMBL:JAB09378.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040198}  [Source:UniProtKB/TrEMBL;Acc:F7HY08]
ENSCJAG00000012692	KNOWN_BY_PROJECTION	protein_coding	PSME1	chromosome:C_jacchus3.2.1:6:1:158406734:1	141856008	141857484	R	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) [Source:HGNC Symbol;Acc:HGNC:9568]
ENSCJAG00000012708	KNOWN_BY_PROJECTION	protein_coding	NYAP2	chromosome:C_jacchus3.2.1:6:1:158406734:1	141917788	142233054	D	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 [Source:HGNC Symbol;Acc:HGNC:29291]
ENSCJAG00000012726	KNOWN	protein_coding	CYR61	chromosome:C_jacchus3.2.1:6:1:158406734:1	142865623	142868830	D	Protein CYR61 {ECO:0000313|EMBL:JAB06911.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023363}  [Source:UniProtKB/TrEMBL;Acc:F7I1R4]
ENSCJAG00000021598	KNOWN	protein_coding	EPS8	chromosome:C_jacchus3.2.1:9:1:124281992:1	5678920	5851495	D	Epidermal growth factor receptor kinase substrate 8 {ECO:0000313|EMBL:JAB03601.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040205}  [Source:UniProtKB/TrEMBL;Acc:F7INU5]
ENSCJAG00000012760	KNOWN_BY_PROJECTION	protein_coding	IRS1	chromosome:C_jacchus3.2.1:6:1:158406734:1	143256399	143320804	R	insulin receptor substrate 1 [Source:HGNC Symbol;Acc:HGNC:6125]
ENSCJAG00000012767	KNOWN_BY_PROJECTION	protein_coding	RHBDD1	chromosome:C_jacchus3.2.1:6:1:158406734:1	143386329	143520056	D	rhomboid domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23081]
ENSCJAG00000012774	KNOWN_BY_PROJECTION	protein_coding	COL4A4	chromosome:C_jacchus3.2.1:6:1:158406734:1	143531667	143644335	R	collagen, type IV, alpha 4 [Source:HGNC Symbol;Acc:HGNC:2206]
ENSCJAG00000012821	KNOWN_BY_PROJECTION	protein_coding	COL4A3	chromosome:C_jacchus3.2.1:6:1:158406734:1	143690303	143838309	D	collagen, type IV, alpha 3 (Goodpasture antigen) [Source:HGNC Symbol;Acc:HGNC:2204]
ENSCJAG00000021600	KNOWN_BY_PROJECTION	protein_coding	PTPRO	chromosome:C_jacchus3.2.1:9:1:124281992:1	5876116	5998439	R	protein tyrosine phosphatase, receptor type, O [Source:HGNC Symbol;Acc:HGNC:9678]
ENSCJAG00000021602	KNOWN	protein_coding	RERG	chromosome:C_jacchus3.2.1:9:1:124281992:1	6272499	6391321	D	Ras-related and estrogen-regulated growth inhibitor isoform 2 {ECO:0000313|EMBL:JAB04449.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040213}  [Source:UniProtKB/TrEMBL;Acc:F7INT9]
ENSCJAG00000021603	NOVEL	pseudogene	ENSCJAG00000021603	chromosome:C_jacchus3.2.1:9:1:124281992:1	6502810	6503514	D	<no descrition>
ENSCJAG00000021604	KNOWN_BY_PROJECTION	protein_coding	PDE6H	chromosome:C_jacchus3.2.1:9:1:124281992:1	6507421	6516710	R	phosphodiesterase 6H, cGMP-specific, cone, gamma [Source:HGNC Symbol;Acc:HGNC:8790]
ENSCJAG00000012973	KNOWN	protein_coding	MFF	chromosome:C_jacchus3.2.1:6:1:158406734:1	143849796	143882472	D	Mitochondrial fission factor {ECO:0000313|EMBL:JAB32650.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023828}  [Source:UniProtKB/TrEMBL;Acc:F7D4I8]
ENSCJAG00000021605	KNOWN	protein_coding	ARHGDIB	chromosome:C_jacchus3.2.1:9:1:124281992:1	6528321	6548455	D	Rho GDP-dissociation inhibitor 2 {ECO:0000313|EMBL:JAB10340.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040215}  [Source:UniProtKB/TrEMBL;Acc:F7INT7]
ENSCJAG00000021606	KNOWN_BY_PROJECTION	protein_coding	ERP27	chromosome:C_jacchus3.2.1:9:1:124281992:1	6551527	6576373	D	endoplasmic reticulum protein 27 [Source:HGNC Symbol;Acc:HGNC:26495]
ENSCJAG00000021607	KNOWN	protein_coding	MGP	chromosome:C_jacchus3.2.1:9:1:124281992:1	6603760	6608708	D	Matrix Gla protein isoform 2 {ECO:0000313|EMBL:JAB08911.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040217}  [Source:UniProtKB/TrEMBL;Acc:F7INT5]
ENSCJAG00000012994	KNOWN_BY_PROJECTION	protein_coding	TM4SF20	chromosome:C_jacchus3.2.1:6:1:158406734:1	143887849	143903848	R	transmembrane 4 L six family member 20 [Source:HGNC Symbol;Acc:HGNC:26230]
ENSCJAG00000012997	KNOWN	protein_coding	AGFG1	chromosome:C_jacchus3.2.1:6:1:158406734:1	143995674	144063641	D	Arf-GAP domain and FG repeat-containing protein 1 isoform 2 {ECO:0000313|EMBL:JAB09516.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023912}  [Source:UniProtKB/TrEMBL;Acc:F7GBP1]
ENSCJAG00000021608	KNOWN_BY_PROJECTION	protein_coding	ART4	chromosome:C_jacchus3.2.1:9:1:124281992:1	6650845	6665165	D	ADP-ribosyltransferase 4 (Dombrock blood group) [Source:HGNC Symbol;Acc:HGNC:726]
ENSCJAG00000021609	KNOWN_BY_PROJECTION	protein_coding	C12orf60	chromosome:C_jacchus3.2.1:9:1:124281992:1	6670286	6671369	R	chromosome 12 open reading frame 60 [Source:HGNC Symbol;Acc:HGNC:28726]
ENSCJAG00000021610	KNOWN_BY_PROJECTION	protein_coding	SMCO3	chromosome:C_jacchus3.2.1:9:1:124281992:1	6680566	6690105	D	single-pass membrane protein with coiled-coil domains 3 [Source:HGNC Symbol;Acc:HGNC:34401]
ENSCJAG00000021611	KNOWN_BY_PROJECTION	protein_coding	WBP11	chromosome:C_jacchus3.2.1:9:1:124281992:1	6691354	6707771	D	WW domain binding protein 11 [Source:HGNC Symbol;Acc:HGNC:16461]
ENSCJAG00000014125	KNOWN_BY_PROJECTION	protein_coding	C2orf83	chromosome:C_jacchus3.2.1:6:1:158406734:1	144144831	144149430	R	chromosome 2 open reading frame 83 [Source:HGNC Symbol;Acc:HGNC:25344]
ENSCJAG00000013039	KNOWN_BY_PROJECTION	protein_coding	SLC19A3	chromosome:C_jacchus3.2.1:6:1:158406734:1	144214429	144244902	R	solute carrier family 19 (thiamine transporter), member 3 [Source:HGNC Symbol;Acc:HGNC:16266]
ENSCJAG00000021614	KNOWN_BY_PROJECTION	protein_coding	GUCY2C	chromosome:C_jacchus3.2.1:9:1:124281992:1	6740986	6827911	D	guanylate cyclase 2C [Source:HGNC Symbol;Acc:HGNC:4688]
ENSCJAG00000013048	KNOWN	protein_coding	CCL20	chromosome:C_jacchus3.2.1:6:1:158406734:1	144342154	144345921	D	C-C motif chemokine {ECO:0000256|RuleBase:RU361150}  [Source:UniProtKB/TrEMBL;Acc:F7FKP5]
ENSCJAG00000013055	KNOWN	protein_coding	DAW1	chromosome:C_jacchus3.2.1:6:1:158406734:1	144393609	144450353	D	Outer row dynein assembly protein 16 homolog {ECO:0000313|EMBL:JAB20805.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000023986}  [Source:UniProtKB/TrEMBL;Acc:F7EFG7]
ENSCJAG00000021618	KNOWN_BY_PROJECTION	protein_coding	PLBD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	6902601	6961300	D	phospholipase B domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26215]
ENSCJAG00000021620	KNOWN_BY_PROJECTION	protein_coding	ATF7IP	chromosome:C_jacchus3.2.1:9:1:124281992:1	6966130	7096201	R	activating transcription factor 7 interacting protein [Source:HGNC Symbol;Acc:HGNC:20092]
ENSCJAG00000013076	KNOWN_BY_PROJECTION	protein_coding	SPHKAP	chromosome:C_jacchus3.2.1:6:1:158406734:1	144499946	144682784	R	SPHK1 interactor, AKAP domain containing [Source:HGNC Symbol;Acc:HGNC:30619]
ENSCJAG00000013089	NOVEL	pseudogene	ENSCJAG00000013089	chromosome:C_jacchus3.2.1:6:1:158406734:1	145326215	145327651	D	<no descrition>
ENSCJAG00000013096	KNOWN	protein_coding	PID1	chromosome:C_jacchus3.2.1:6:1:158406734:1	145458019	145713443	R	PTB-containing, cubilin and LRP1-interacting protein isoform 2 {ECO:0000313|EMBL:JAB10904.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024047}  [Source:UniProtKB/TrEMBL;Acc:F7GTM1]
ENSCJAG00000013102	KNOWN	protein_coding	DNER	chromosome:C_jacchus3.2.1:6:1:158406734:1	145793140	146183178	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024089}  [Source:UniProtKB/TrEMBL;Acc:F7G2V2]
ENSCJAG00000021621	KNOWN_BY_PROJECTION	protein_coding	GRIN2B	chromosome:C_jacchus3.2.1:9:1:124281992:1	7612462	7924487	D	glutamate receptor, ionotropic, N-methyl D-aspartate 2B [Source:HGNC Symbol;Acc:HGNC:4586]
ENSCJAG00000013123	KNOWN	protein_coding	TRIP12	chromosome:C_jacchus3.2.1:6:1:158406734:1	146238328	146402963	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000024264}  [Source:UniProtKB/TrEMBL;Acc:F7FAS7]
ENSCJAG00000021624	KNOWN	protein_coding	EMP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	8298840	8304108	R	Epithelial membrane protein 1 {ECO:0000313|EMBL:JAB08932.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040252}  [Source:UniProtKB/TrEMBL;Acc:F7ILG1]
ENSCJAG00000021625	NOVEL	protein_coding	ENSCJAG00000021625	chromosome:C_jacchus3.2.1:9:1:124281992:1	8416402	8435629	D	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040253}  [Source:UniProtKB/TrEMBL;Acc:F7ILG0]
ENSCJAG00000021626	KNOWN_BY_PROJECTION	protein_coding	KIAA1467	chromosome:C_jacchus3.2.1:9:1:124281992:1	8435714	8478924	R	KIAA1467 [Source:HGNC Symbol;Acc:HGNC:29288]
ENSCJAG00000021628	KNOWN	protein_coding	HEBP1	chromosome:C_jacchus3.2.1:9:1:124281992:1	8528290	8554737	D	Heme-binding protein 1 {ECO:0000313|EMBL:JAB01902.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040263}  [Source:UniProtKB/TrEMBL;Acc:F7IJ77]
ENSCJAG00000021630	KNOWN_BY_PROJECTION	protein_coding	GPRC5D	chromosome:C_jacchus3.2.1:9:1:124281992:1	8581333	8591620	D	G protein-coupled receptor, class C, group 5, member D [Source:HGNC Symbol;Acc:HGNC:13310]
ENSCJAG00000013238	KNOWN_BY_PROJECTION	protein_coding	FBXO36	chromosome:C_jacchus3.2.1:6:1:158406734:1	146403519	146489997	D	F-box protein 36 [Source:HGNC Symbol;Acc:HGNC:27020]
ENSCJAG00000021631	KNOWN	protein_coding	GPRC5A	chromosome:C_jacchus3.2.1:9:1:124281992:1	8618555	8623544	R	Retinoic acid-induced protein 3 {ECO:0000313|EMBL:JAB06211.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040267}  [Source:UniProtKB/TrEMBL;Acc:F7IJ74]
ENSCJAG00000013244	KNOWN_BY_PROJECTION	protein_coding	SLC16A14	chromosome:C_jacchus3.2.1:6:1:158406734:1	146504473	146530541	R	solute carrier family 16, member 14 [Source:HGNC Symbol;Acc:HGNC:26417]
ENSCJAG00000021633	KNOWN	protein_coding	DDX47	chromosome:C_jacchus3.2.1:9:1:124281992:1	8715309	8733248	R	Putative ATP-dependent RNA helicase DDX47 isoform 1 {ECO:0000313|EMBL:JAB05160.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040270}  [Source:UniProtKB/TrEMBL;Acc:F7IJ62]
ENSCJAG00000013254	NOVEL	protein_coding	ENSCJAG00000013254	chromosome:C_jacchus3.2.1:6:1:158406734:1	146635838	146691445	R	<no descrition>
ENSCJAG00000013289	KNOWN_BY_PROJECTION	protein_coding	SP140	chromosome:C_jacchus3.2.1:6:1:158406734:1	146695736	146873753	D	SP140 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:17133]
ENSCJAG00000021635	KNOWN_BY_PROJECTION	protein_coding	APOLD1	chromosome:C_jacchus3.2.1:9:1:124281992:1	8760081	8762552	R	apolipoprotein L domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25268]
ENSCJAG00000021636	KNOWN	protein_coding	CDKN1B	chromosome:C_jacchus3.2.1:9:1:124281992:1	8834827	8839876	R	Cyclin-dependent kinase inhibitor 1B {ECO:0000313|EMBL:JAB10165.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040274}  [Source:UniProtKB/TrEMBL;Acc:F7IJ60]
ENSCJAG00000021637	KNOWN	protein_coding	GPR19	chromosome:C_jacchus3.2.1:9:1:124281992:1	8858744	8902979	D	Putative G-protein coupled receptor 19 {ECO:0000313|EMBL:JAB12901.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000050097}  [Source:UniProtKB/TrEMBL;Acc:F7F058]
ENSCJAG00000021638	KNOWN	protein_coding	CREBL2	chromosome:C_jacchus3.2.1:9:1:124281992:1	8923666	8949071	R	Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040278}; cAMP-responsive element-binding protein-like 2 {ECO:0000313|EMBL:JAB11007.1}  [Source:UniProtKB/TrEMBL;Acc:F7IJ56]
ENSCJAG00000035676	KNOWN_BY_PROJECTION	protein_coding	SP140L	chromosome:C_jacchus3.2.1:6:1:158406734:1	146792756	146874955	D	SP140 nuclear body protein-like [Source:HGNC Symbol;Acc:HGNC:25105]
ENSCJAG00000021639	KNOWN	protein_coding	DUSP16	chromosome:C_jacchus3.2.1:9:1:124281992:1	8997135	9091923	D	Dual specificity protein phosphatase 16 {ECO:0000313|EMBL:JAB13509.1}; Uncharacterized protein {ECO:0000313|Ensembl:ENSCJAP00000040282}  [Source:UniProtKB/TrEMBL;Acc:F7IJ42]
ENSCJAG00000013324	KNOWN_BY_PROJECTION	protein_coding	SP100	chromosome:C_jacchus3.2.1:6:1:158406734:1	146887890	147020839	D	SP100 nuclear antigen [Source:HGNC Symbol;Acc:HGNC:11206]
ENSCJAG00000035118	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	155890159	155890262	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029302	NOVEL	miRNA	ENSCJAG00000029302	chromosome:C_jacchus3.2.1:10:1:132174527:1	47793337	47793399	D	<no descrition>
ENSCJAG00000027181	NOVEL	miRNA	ENSCJAG00000027181	chromosome:C_jacchus3.2.1:22:1:49145316:1	6807329	6807431	D	<no descrition>
ENSCJAG00000033199	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:4:1:171630274:1	25968632	25968790	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000036167	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	56425735	56426030	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029852	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:10:1:132174527:1	39376988	39377206	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000033174	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	39868105	39868207	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028681	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	76050524	76050638	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025992	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	119777174	119777281	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030510	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	900477	900742	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023572	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	128985489	128985584	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026597	NOVEL	snoRNA	SNORD47	chromosome:C_jacchus3.2.1:18:1:47448759:1	33120979	33121055	D	Small nucleolar RNA SNORD47 [Source:RFAM;Acc:RF00281]
ENSCJAG00000035741	NOVEL	miRNA	ENSCJAG00000035741	chromosome:C_jacchus3.2.1:13:1:117903854:1	9789223	9789291	D	<no descrition>
ENSCJAG00000026210	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	156340404	156340506	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031995	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	72846214	72846315	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033383	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	45140657	45140741	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032843	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:3:1:190850796:1	141818953	141819093	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000031428	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	25464325	25464426	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027411	NOVEL	miRNA	ENSCJAG00000027411	chromosome:C_jacchus3.2.1:1:1:210400635:1	71465929	71466018	R	<no descrition>
ENSCJAG00000028390	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	80427067	80427167	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027319	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:20:1:44557958:1	27899253	27899392	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028401	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	32002338	32002444	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024941	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	91938722	91938822	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029927	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	75437950	75438089	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025238	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1287507	1287588	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000028496	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	42014342	42014447	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025442	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	94147340	94147441	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026070	NOVEL	miRNA	ENSCJAG00000026070	chromosome:C_jacchus3.2.1:6:1:158406734:1	148343883	148343939	R	<no descrition>
ENSCJAG00000038139	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	145022754	145023048	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034442	NOVEL	misc_RNA	GRIK4_3p_UTR	chromosome:C_jacchus3.2.1:11:1:130397257:1	18727145	18727234	D	GRIK4 3 prime UTR element [Source:RFAM;Acc:RF01383]
ENSCJAG00000024293	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:7:1:155834243:1	17320953	17321165	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000035620	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286550.1:1:37059:1	10813	10904	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037609	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	25086774	25087070	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033358	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	83477387	83477494	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037268	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	11930593	11930887	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038032	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	168858107	168858403	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024071	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	134879699	134880007	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025309	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	46636524	46636629	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027969	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	75981761	75981868	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028510	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	46346904	46347010	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036525	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	62144669	62144965	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024694	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	51089978	51090084	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024741	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	22467483	22467623	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026352	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1321589	1321670	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000034990	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	75398964	75399058	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025613	NOVEL	snoRNA	SCARNA20	chromosome:C_jacchus3.2.1:5:1:159171411:1	96073879	96074016	R	Small Cajal body specific RNA 20 [Source:RFAM;Acc:RF00601]
ENSCJAG00000036722	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	144959217	144959513	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026184	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	16585193	16585309	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023825	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	97717719	97717820	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027689	NOVEL	miRNA	ENSCJAG00000027689	chromosome:C_jacchus3.2.1:2:1:204313951:1	90668232	90668314	D	<no descrition>
ENSCJAG00000027833	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	27885365	27885470	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027540	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	151781829	151781935	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034633	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	28785613	28785709	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026764	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	155967500	155967612	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025318	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:20:1:44557958:1	21029172	21029497	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026863	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	29088465	29088565	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036673	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	93273974	93274270	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037630	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL287442.1:1:64216:1	24914	25020	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025356	NOVEL	snoRNA	SNORD58	chromosome:C_jacchus3.2.1:13:1:117903854:1	87407032	87407095	R	Small nucleolar RNA SNORD58 [Source:RFAM;Acc:RF00151]
ENSCJAG00000023968	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	354791	354892	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033970	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:2:1:204313951:1	134599654	134599715	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000038054	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	51712683	51712979	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035681	NOVEL	miRNA	ENSCJAG00000035681	chromosome:C_jacchus3.2.1:5:1:159171411:1	122891791	122891884	R	<no descrition>
ENSCJAG00000036181	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285304.1:1:11526:1	48	154	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024243	NOVEL	miRNA	ENSCJAG00000024243	chromosome:C_jacchus3.2.1:2:1:204313951:1	15212586	15212684	D	<no descrition>
ENSCJAG00000032604	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	42360016	42360122	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024284	NOVEL	miRNA	ENSCJAG00000024284	chromosome:C_jacchus3.2.1:8:1:128169293:1	54009869	54009952	D	<no descrition>
ENSCJAG00000024523	NOVEL	miRNA	ENSCJAG00000024523	chromosome:C_jacchus3.2.1:19:1:49578535:1	31105920	31106013	D	<no descrition>
ENSCJAG00000024117	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:4:1:171630274:1	143774877	143775016	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000028030	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	103832784	103832889	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032859	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:9:1:124281992:1	33382525	33382643	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000031479	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	139318416	139318515	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030120	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	118060334	118060474	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026406	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	22688654	22688756	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033749	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:9:1:124281992:1	45132453	45132516	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000029820	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:4:1:171630274:1	39237515	39237587	D	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000024331	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	84045364	84045461	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028872	NOVEL	miRNA	ENSCJAG00000028872	chromosome:C_jacchus3.2.1:9:1:124281992:1	92090811	92090908	R	<no descrition>
ENSCJAG00000035486	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	113894446	113894565	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029167	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	125276846	125276952	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037701	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	45703619	45703912	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034066	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	3104676	3104834	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031167	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:1:1:210400635:1	135921061	135921176	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000034323	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	79946658	79946764	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033733	NOVEL	snoRNA	ACA64	chromosome:C_jacchus3.2.1:X:1:142054208:1	71619596	71619705	R	Small nucleolar RNA ACA64 [Source:RFAM;Acc:RF01225]
ENSCJAG00000032284	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	1395409	1395514	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036341	NOVEL	miRNA	ENSCJAG00000036341	chromosome:C_jacchus3.2.1:5:1:159171411:1	41234338	41234429	D	<no descrition>
ENSCJAG00000028472	NOVEL	miRNA	ENSCJAG00000028472	chromosome:C_jacchus3.2.1:10:1:132174527:1	17127465	17127538	D	<no descrition>
ENSCJAG00000037572	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288533.1:1:13997:1	12845	12942	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035687	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288634.1:1:10969:1	4180	4286	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029557	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	101694404	101694506	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035783	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	78851316	78851620	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031000	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	40331577	40331714	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026523	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	107778307	107778408	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025533	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1118068	1118163	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000029438	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	10864597	10864717	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025853	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	142683235	142683342	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024865	NOVEL	miRNA	ENSCJAG00000024865	chromosome:C_jacchus3.2.1:22:1:49145316:1	38093499	38093616	D	<no descrition>
ENSCJAG00000026120	NOVEL	miRNA	ENSCJAG00000026120	chromosome:C_jacchus3.2.1:5:1:159171411:1	116081905	116081989	R	<no descrition>
ENSCJAG00000036038	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	78871234	78871530	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035750	NOVEL	miRNA	ENSCJAG00000035750	chromosome:C_jacchus3.2.1:13:1:117903854:1	45000687	45000770	D	<no descrition>
ENSCJAG00000027461	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	68974110	68974211	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036165	NOVEL	miRNA	ENSCJAG00000036165	chromosome:C_jacchus3.2.1:9:1:124281992:1	19052487	19052581	R	<no descrition>
ENSCJAG00000025063	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	19854623	19854730	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031025	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	86402104	86402390	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029953	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126882743	126882810	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000036298	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	86850946	86851242	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024288	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	126567196	126567355	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033449	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	62330920	62330981	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030850	NOVEL	miRNA	ENSCJAG00000030850	chromosome:C_jacchus3.2.1:6:1:158406734:1	64226135	64226221	D	<no descrition>
ENSCJAG00000023929	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	148380950	148381066	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000034048	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	154110280	154110401	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030733	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	15554849	15554967	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028283	NOVEL	miRNA	ENSCJAG00000028283	chromosome:C_jacchus3.2.1:8:1:128169293:1	116491536	116491605	D	<no descrition>
ENSCJAG00000029507	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:4:1:171630274:1	16950030	16950171	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000029066	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	97469891	97470014	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034615	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:10:1:132174527:1	6667202	6667319	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035591	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	108168168	108168455	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032921	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	88677226	88677333	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031087	NOVEL	miRNA	ENSCJAG00000031087	chromosome:C_jacchus3.2.1:19:1:49578535:1	15166281	15166349	D	<no descrition>
ENSCJAG00000025983	NOVEL	miRNA	ENSCJAG00000025983	chromosome:C_jacchus3.2.1:1:1:210400635:1	201773261	201773314	D	<no descrition>
ENSCJAG00000035867	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL287011.1:1:5150:1	4122	4228	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031199	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	148831874	148831981	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036192	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:6:1:158406734:1	108676297	108676397	D	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000029958	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	142139995	142140304	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027445	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	113210561	113210742	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037667	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	140922913	140923209	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037300	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	12323174	12323457	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027370	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	97181757	97181897	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035846	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	15594645	15594937	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025343	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	141657858	141657973	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036285	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	110223478	110223778	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027098	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	23717325	23717431	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036894	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	69523614	69523910	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036204	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	70634820	70635117	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033533	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	21745329	21745440	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037248	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL289360.1:1:8600:1	1326	1423	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026162	NOVEL	miRNA	ENSCJAG00000026162	chromosome:C_jacchus3.2.1:X:1:142054208:1	134457477	134457569	R	<no descrition>
ENSCJAG00000033336	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	62990461	62990579	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032414	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	76326310	76326419	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033785	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	39178889	39178991	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035762	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286273.1:1:44316:1	1430	1719	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029618	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:1:1:210400635:1	74249333	74249450	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035160	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:13:1:117903854:1	86228520	86228579	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026489	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	20784977	20785080	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027307	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	64876782	64876945	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000038095	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	125653837	125654129	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035722	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	60708813	60709109	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027167	NOVEL	miRNA	ENSCJAG00000027167	chromosome:C_jacchus3.2.1:5:1:159171411:1	64074288	64074356	D	<no descrition>
ENSCJAG00000025963	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	76407512	76407620	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033119	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	47987563	47987669	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032028	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	135603288	135603412	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000023582	NOVEL	miRNA	ENSCJAG00000023582	chromosome:C_jacchus3.2.1:17:1:74750902:1	18964673	18964752	R	<no descrition>
ENSCJAG00000032855	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:11:1:130397257:1	100977287	100977388	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000026077	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:5:1:159171411:1	73668364	73668495	D	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000027645	NOVEL	snoRNA	SNORA33	chromosome:C_jacchus3.2.1:12:1:121768101:1	90719692	90719821	D	Small nucleolar RNA SNORA33 [Source:RFAM;Acc:RF00438]
ENSCJAG00000037505	NOVEL	miRNA	ENSCJAG00000037505	chromosome:C_jacchus3.2.1:6:1:158406734:1	88080588	88080682	R	<no descrition>
ENSCJAG00000023791	NOVEL	miRNA	ENSCJAG00000023791	chromosome:C_jacchus3.2.1:9:1:124281992:1	51936061	51936159	R	<no descrition>
ENSCJAG00000025409	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	19081960	19082059	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037960	NOVEL	miRNA	ENSCJAG00000037960	chromosome:C_jacchus3.2.1:22:1:49145316:1	43320213	43320328	R	<no descrition>
ENSCJAG00000031820	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	2467975	2468093	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030398	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	6044997	6045137	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035698	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	107065	107171	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029415	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	125849381	125849489	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035388	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	8210412	8210514	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024530	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	7414550	7414690	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031952	NOVEL	snoRNA	SNORA19	chromosome:C_jacchus3.2.1:9:1:124281992:1	49444707	49444820	D	Small nucleolar RNA SNORA19 [Source:RFAM;Acc:RF00413]
ENSCJAG00000024949	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	98444829	98444992	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035986	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	13941237	13941534	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028296	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	134762305	134762398	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023832	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	121436545	121436647	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024947	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	5816260	5816363	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035430	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	41683181	41683282	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026324	NOVEL	miRNA	ENSCJAG00000026324	chromosome:C_jacchus3.2.1:4:1:171630274:1	103255984	103256098	R	<no descrition>
ENSCJAG00000031599	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	275231	275336	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031302	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	57301314	57301411	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036518	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	22749677	22749970	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035938	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	89292728	89293024	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030989	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126903186	126903257	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000036407	NOVEL	miRNA	ENSCJAG00000036407	chromosome:C_jacchus3.2.1:3:1:190850796:1	2683395	2683488	R	<no descrition>
ENSCJAG00000025023	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	123828221	123828331	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023862	NOVEL	miRNA	ENSCJAG00000023862	chromosome:C_jacchus3.2.1:8:1:128169293:1	31915154	31915218	D	<no descrition>
ENSCJAG00000033434	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	47762561	47762659	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025905	NOVEL	miRNA	ENSCJAG00000025905	chromosome:C_jacchus3.2.1:X:1:142054208:1	56122926	56123020	R	<no descrition>
ENSCJAG00000036865	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	94438296	94438592	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023741	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:3:1:190850796:1	21303687	21303816	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000027299	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	104648426	104648537	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026137	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	51400366	51400504	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035358	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	10051786	10051891	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036277	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	62076522	62076820	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029629	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	98218153	98218316	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031729	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:4:1:171630274:1	155467992	155468043	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000025288	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	23859661	23859761	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026565	NOVEL	miRNA	ENSCJAG00000026565	chromosome:C_jacchus3.2.1:19:1:49578535:1	29756442	29756522	R	<no descrition>
ENSCJAG00000036211	NOVEL	miRNA	ENSCJAG00000036211	chromosome:C_jacchus3.2.1:3:1:190850796:1	87482454	87482548	R	<no descrition>
ENSCJAG00000029688	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	63674119	63674259	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024020	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	25679872	25679969	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026542	NOVEL	miRNA	ENSCJAG00000026542	chromosome:C_jacchus3.2.1:4:1:171630274:1	61108507	61108596	R	<no descrition>
ENSCJAG00000037696	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	81218444	81218737	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030678	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	125704876	125704982	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028144	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	17782857	17782962	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032486	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92692602	92692703	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027282	NOVEL	snoRNA	SNORA66	chromosome:C_jacchus3.2.1:7:1:155834243:1	129303932	129304064	D	Small nucleolar RNA SNORA66 [Source:RFAM;Acc:RF00155]
ENSCJAG00000025214	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	142630301	142630401	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030708	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	6637480	6637588	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034085	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	80496736	80497107	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036173	NOVEL	miRNA	ENSCJAG00000036173	chromosome:C_jacchus3.2.1:12:1:121768101:1	47892420	47892471	D	<no descrition>
ENSCJAG00000023505	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	133941371	133941548	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037336	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	81914917	81915213	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030714	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	51757126	51757228	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037360	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	39088327	39088623	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026447	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	88671232	88671540	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025911	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:16:1:96796970:1	32663393	32663589	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000035586	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	152823120	152823421	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028111	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	154877686	154877783	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036516	NOVEL	miRNA	ENSCJAG00000036516	chromosome:C_jacchus3.2.1:4:1:171630274:1	98822825	98822908	R	<no descrition>
ENSCJAG00000031001	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	155314151	155314256	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029640	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	47534251	47534354	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037129	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	60270892	60271188	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026422	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	77738131	77738249	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035838	NOVEL	snRNA	U2	scaffold:C_jacchus3.2.1:GL285650.1:1:4403:1	4018	4215	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000031781	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	183254173	183254273	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025627	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	74226999	74227092	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029974	NOVEL	miRNA	ENSCJAG00000029974	chromosome:C_jacchus3.2.1:7:1:155834243:1	43621531	43621641	R	<no descrition>
ENSCJAG00000028822	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	131320164	131320270	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026507	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	107382258	107382364	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032994	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	52404933	52405051	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029385	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	34434872	34434972	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031908	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	102799244	102799349	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031547	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	3883222	3883328	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036412	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	114791923	114792199	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026913	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:11:1:130397257:1	73830068	73830193	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000025702	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:19:1:49578535:1	24592044	24592165	D	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000029845	NOVEL	miRNA	ENSCJAG00000029845	chromosome:C_jacchus3.2.1:14:1:108792865:1	87622072	87622157	R	<no descrition>
ENSCJAG00000033801	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	71487098	71487161	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029729	NOVEL	miRNA	ENSCJAG00000029729	chromosome:C_jacchus3.2.1:6:1:158406734:1	135620513	135620595	R	<no descrition>
ENSCJAG00000029893	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	43836914	43837017	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024992	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	110055181	110055284	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032040	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	152054802	152054925	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029475	NOVEL	snoRNA	SNORA8	chromosome:C_jacchus3.2.1:2:1:204313951:1	47900950	47901085	R	Small nucleolar RNA SNORA8 [Source:RFAM;Acc:RF00393]
ENSCJAG00000034219	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	41625573	41625679	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033302	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	7328247	7328349	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026193	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	10501422	10501525	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037306	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286231.1:1:82185:1	70581	70684	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029981	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	98952157	98952259	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026053	NOVEL	miRNA	ENSCJAG00000026053	chromosome:C_jacchus3.2.1:2:1:204313951:1	164305389	164305474	D	<no descrition>
ENSCJAG00000029381	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	84559551	84559688	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027172	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	105690092	105690198	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024492	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	56896721	56896829	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030516	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	103555897	103555992	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038123	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	155524701	155524996	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035963	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	11326718	11327013	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037207	NOVEL	miRNA	ENSCJAG00000037207	chromosome:C_jacchus3.2.1:21:1:50472720:1	30685155	30685271	R	<no descrition>
ENSCJAG00000024445	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	68315528	68315624	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029991	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	124865398	124865499	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033931	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	6958131	6958237	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026334	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	50587275	50587376	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027014	NOVEL	miRNA	ENSCJAG00000027014	chromosome:C_jacchus3.2.1:6:1:158406734:1	134777748	134777824	D	<no descrition>
ENSCJAG00000024490	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	166743454	166743562	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033035	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29542715	29542851	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031687	NOVEL	snoRNA	SNORA43	chromosome:C_jacchus3.2.1:12:1:121768101:1	27385856	27385961	D	Small nucleolar RNA SNORA43 [Source:RFAM;Acc:RF00416]
ENSCJAG00000030808	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1135414	1135502	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000035736	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL289361.1:1:9422:1	2974	3071	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035694	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	105155	105259	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027868	NOVEL	miRNA	ENSCJAG00000027868	chromosome:C_jacchus3.2.1:11:1:130397257:1	106749223	106749314	D	<no descrition>
ENSCJAG00000036459	NOVEL	miRNA	ENSCJAG00000036459	chromosome:C_jacchus3.2.1:9:1:124281992:1	107881765	107881853	R	<no descrition>
ENSCJAG00000035978	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL290174.1:1:9144:1	5472	5644	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028861	NOVEL	miRNA	ENSCJAG00000028861	chromosome:C_jacchus3.2.1:5:1:159171411:1	74872185	74872264	D	<no descrition>
ENSCJAG00000026346	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	3065816	3065935	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031260	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	72665434	72665540	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036689	NOVEL	miRNA	ENSCJAG00000036689	chromosome:C_jacchus3.2.1:4:1:171630274:1	64813804	64813882	R	<no descrition>
ENSCJAG00000031024	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	128841398	128841504	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024037	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	104566027	104566121	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029896	NOVEL	miRNA	ENSCJAG00000029896	chromosome:C_jacchus3.2.1:12:1:121768101:1	108413667	108413760	R	<no descrition>
ENSCJAG00000029210	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	58339183	58339289	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025424	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	64584435	64584537	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024081	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:1:1:210400635:1	42118140	42118271	R	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000035640	NOVEL	miRNA	ENSCJAG00000035640	chromosome:C_jacchus3.2.1:4:1:171630274:1	90107344	90107427	R	<no descrition>
ENSCJAG00000032725	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	89288230	89288328	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025235	NOVEL	miRNA	ENSCJAG00000025235	chromosome:C_jacchus3.2.1:11:1:130397257:1	43324387	43324470	D	<no descrition>
ENSCJAG00000032738	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	71810740	71810841	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024571	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	75420041	75420149	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025092	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	72708875	72709038	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032406	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:5:1:159171411:1	1134376	1134493	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000026543	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	108846650	108846751	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032504	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	59554294	59554434	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037069	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	186595276	186595572	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037468	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	179507429	179507530	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023620	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	48706740	48706860	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024320	NOVEL	miRNA	ENSCJAG00000024320	chromosome:C_jacchus3.2.1:X:1:142054208:1	83530707	83530807	D	<no descrition>
ENSCJAG00000033823	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	140829160	140829263	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027755	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	36163463	36163626	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023974	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	38226426	38226534	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029906	NOVEL	miRNA	ENSCJAG00000029906	chromosome:C_jacchus3.2.1:3:1:190850796:1	149256931	149257033	D	<no descrition>
ENSCJAG00000025641	NOVEL	miRNA	ENSCJAG00000025641	chromosome:C_jacchus3.2.1:1:1:210400635:1	60201521	60201606	D	<no descrition>
ENSCJAG00000028013	NOVEL	snoRNA	SCARNA24	chromosome:C_jacchus3.2.1:5:1:159171411:1	122004414	122004551	R	Small Cajal body specific RNA 24 [Source:RFAM;Acc:RF00422]
ENSCJAG00000037195	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	192477759	192478055	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036379	NOVEL	miRNA	ENSCJAG00000036379	chromosome:C_jacchus3.2.1:12:1:121768101:1	107160972	107161044	D	<no descrition>
ENSCJAG00000037891	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	4672454	4672750	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030070	NOVEL	miRNA	ENSCJAG00000030070	chromosome:C_jacchus3.2.1:13:1:117903854:1	8366840	8366921	D	<no descrition>
ENSCJAG00000036335	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	39606278	39606573	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027822	NOVEL	snoRNA	SNORA5	chromosome:C_jacchus3.2.1:8:1:128169293:1	12647518	12647651	R	Small nucleolar RNA SNORA5 [Source:RFAM;Acc:RF00392]
ENSCJAG00000037733	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	62933	63052	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032547	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	25584148	25584254	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034051	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	159287049	159287156	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036583	NOVEL	miRNA	ENSCJAG00000036583	chromosome:C_jacchus3.2.1:7:1:155834243:1	107878473	107878554	R	<no descrition>
ENSCJAG00000034260	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	6401038	6401099	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030061	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	22870243	22870347	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028128	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	181970898	181971058	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031338	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	45392723	45392831	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025060	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	28312893	28313001	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027885	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	95220676	95220782	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027707	NOVEL	miRNA	ENSCJAG00000027707	chromosome:C_jacchus3.2.1:4:1:171630274:1	92240061	92240155	R	<no descrition>
ENSCJAG00000036957	NOVEL	miRNA	ENSCJAG00000036957	chromosome:C_jacchus3.2.1:14:1:108792865:1	17329845	17329942	R	<no descrition>
ENSCJAG00000032335	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:12:1:121768101:1	74591102	74591176	R	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000036026	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286019.1:1:38952:1	20769	20874	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037324	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	88574371	88574664	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024763	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	27019271	27019377	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028929	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	155668254	155668365	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037590	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	136348021	136348314	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037313	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	121390151	121390447	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029439	NOVEL	miRNA	ENSCJAG00000029439	chromosome:C_jacchus3.2.1:X:1:142054208:1	92549099	92549244	D	<no descrition>
ENSCJAG00000036035	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	32772118	32772414	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029198	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	28439215	28439369	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037974	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	16500300	16500602	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030882	NOVEL	miRNA	ENSCJAG00000030882	chromosome:C_jacchus3.2.1:14:1:108792865:1	38678736	38678838	R	<no descrition>
ENSCJAG00000037469	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	73855808	73856108	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035419	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	39065031	39065134	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029572	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	86732072	86732178	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038119	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	118096947	118097243	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028009	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	72130701	72131016	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036007	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	67838810	67839107	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026250	NOVEL	snoRNA	SCARNA17	chromosome:C_jacchus3.2.1:7:1:155834243:1	60034946	60035070	D	small Cajal body-specific RNA 17 [Source:RFAM;Acc:RF00492]
ENSCJAG00000027837	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	78965726	78965863	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037372	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	80930027	80930323	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031409	NOVEL	miRNA	ENSCJAG00000031409	chromosome:C_jacchus3.2.1:1:1:210400635:1	76928432	76928510	D	<no descrition>
ENSCJAG00000028682	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	43354013	43354114	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027928	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	48920242	48920345	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031566	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	16069118	16069224	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035842	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL284754.1:1:23854:1	19782	19872	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035302	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	14944276	14944368	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037606	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	8969363	8969659	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024178	NOVEL	miRNA	ENSCJAG00000024178	chromosome:C_jacchus3.2.1:10:1:132174527:1	126956908	126956993	D	<no descrition>
ENSCJAG00000025051	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	94778830	94778970	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035638	NOVEL	miRNA	ENSCJAG00000035638	chromosome:C_jacchus3.2.1:14:1:108792865:1	4846377	4846458	R	<no descrition>
ENSCJAG00000029464	NOVEL	miRNA	ENSCJAG00000029464	chromosome:C_jacchus3.2.1:3:1:190850796:1	90264452	90264541	D	<no descrition>
ENSCJAG00000032794	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:2:1:204313951:1	135460508	135460625	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000036275	NOVEL	miRNA	ENSCJAG00000036275	chromosome:C_jacchus3.2.1:X:1:142054208:1	103075118	103075224	D	<no descrition>
ENSCJAG00000028201	NOVEL	miRNA	ENSCJAG00000028201	chromosome:C_jacchus3.2.1:22:1:49145316:1	13112015	13112149	D	<no descrition>
ENSCJAG00000032475	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:1:1:210400635:1	175143036	175143162	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000035801	NOVEL	miRNA	ENSCJAG00000035801	chromosome:C_jacchus3.2.1:12:1:121768101:1	111416744	111416852	R	<no descrition>
ENSCJAG00000028841	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1249970	1250051	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000037424	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	147141279	147141575	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029798	NOVEL	miRNA	ENSCJAG00000029798	chromosome:C_jacchus3.2.1:1:1:210400635:1	205840652	205840734	D	<no descrition>
ENSCJAG00000024606	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	87286369	87286467	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028847	NOVEL	miRNA	ENSCJAG00000028847	chromosome:C_jacchus3.2.1:5:1:159171411:1	2272835	2272914	R	<no descrition>
ENSCJAG00000031047	NOVEL	miRNA	ENSCJAG00000031047	chromosome:C_jacchus3.2.1:13:1:117903854:1	15968065	15968118	D	<no descrition>
ENSCJAG00000036268	NOVEL	miRNA	ENSCJAG00000036268	chromosome:C_jacchus3.2.1:2:1:204313951:1	120139625	120139794	D	<no descrition>
ENSCJAG00000035098	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	87010689	87010786	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024161	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	43374471	43374796	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036999	NOVEL	miRNA	ENSCJAG00000036999	chromosome:C_jacchus3.2.1:5:1:159171411:1	93000333	93000444	D	<no descrition>
ENSCJAG00000024729	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:X:1:142054208:1	141153061	141153189	D	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000023642	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	60128847	60128951	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030744	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	86531410	86531573	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027379	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	73182860	73182966	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037254	NOVEL	miRNA	ENSCJAG00000037254	chromosome:C_jacchus3.2.1:X:1:142054208:1	1109159	1109244	R	<no descrition>
ENSCJAG00000027660	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	132160290	132160585	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024396	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	26922399	26922504	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036174	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	13034343	13034638	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026958	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	35724565	35724671	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034366	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	108530705	108530824	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026669	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	84810521	84810627	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024782	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	66706723	66706884	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025786	NOVEL	miRNA	ENSCJAG00000025786	chromosome:C_jacchus3.2.1:6:1:158406734:1	117545614	117545707	R	<no descrition>
ENSCJAG00000026381	NOVEL	miRNA	ENSCJAG00000026381	chromosome:C_jacchus3.2.1:6:1:158406734:1	143642591	143642701	D	<no descrition>
ENSCJAG00000027745	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	13087849	13087989	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037507	NOVEL	miRNA	ENSCJAG00000037507	chromosome:C_jacchus3.2.1:5:1:159171411:1	100518392	100518476	D	<no descrition>
ENSCJAG00000034613	NOVEL	snoRNA	snoMBII-202	chromosome:C_jacchus3.2.1:5:1:159171411:1	64409504	64409579	R	Small nucleolar RNA MBII-202 [Source:RFAM;Acc:RF00324]
ENSCJAG00000031832	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	108286458	108286579	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027145	NOVEL	miRNA	ENSCJAG00000027145	chromosome:C_jacchus3.2.1:3:1:190850796:1	89200640	89200718	R	<no descrition>
ENSCJAG00000027839	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	35885001	35885106	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035143	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	41948971	41949045	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028281	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	107317078	107317202	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037165	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	69875	69958	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025486	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	107296256	107296362	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024414	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	115692731	115692845	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023715	NOVEL	snoRNA	SCARNA20	chromosome:C_jacchus3.2.1:19:1:49578535:1	26644083	26644198	D	Small Cajal body specific RNA 20 [Source:RFAM;Acc:RF00601]
ENSCJAG00000032253	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	107757481	107757598	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027670	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	126851356	126851431	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000036156	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	9608258	9608558	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028502	NOVEL	miRNA	ENSCJAG00000028502	chromosome:C_jacchus3.2.1:13:1:117903854:1	81586281	81586366	R	<no descrition>
ENSCJAG00000027178	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	15210193	15210299	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028585	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:5:1:159171411:1	152106156	152106289	R	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000032671	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	6854516	6854749	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029614	NOVEL	miRNA	ENSCJAG00000029614	chromosome:C_jacchus3.2.1:4:1:171630274:1	1219512	1219626	R	<no descrition>
ENSCJAG00000037602	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	17873932	17874224	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029594	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	84888278	84888381	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024074	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	14058328	14058430	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029118	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	54376567	54376702	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031641	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:6:1:158406734:1	106880993	106881118	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000024659	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	46516420	46516528	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024392	NOVEL	snoRNA	SNORA71	chromosome:C_jacchus3.2.1:5:1:159171411:1	32474504	32474636	D	Small nucleolar RNA SNORA71 [Source:RFAM;Acc:RF00056]
ENSCJAG00000031441	NOVEL	miRNA	ENSCJAG00000031441	chromosome:C_jacchus3.2.1:6:1:158406734:1	106116026	106116082	R	<no descrition>
ENSCJAG00000025027	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	62880719	62880819	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027635	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	125202734	125202829	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027946	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	98046703	98046809	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037340	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	12407584	12407881	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029932	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	694009	694109	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029254	NOVEL	snoRNA	SNORD14	chromosome:C_jacchus3.2.1:11:1:130397257:1	20809768	20809859	R	Small nucleolar RNA SNORD14 [Source:RFAM;Acc:RF00016]
ENSCJAG00000037963	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	39250598	39250895	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033162	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	12587964	12588070	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025693	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	70723834	70723940	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034213	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	122460254	122460427	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028515	NOVEL	miRNA	ENSCJAG00000028515	chromosome:C_jacchus3.2.1:19:1:49578535:1	20359174	20359283	R	<no descrition>
ENSCJAG00000029304	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	145788345	145788438	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030217	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:15:1:98464013:1	93743348	93743447	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000034840	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	4076088	4076186	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027500	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	105452559	105452660	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036954	NOVEL	miRNA	ENSCJAG00000036954	chromosome:C_jacchus3.2.1:15:1:98464013:1	83175232	83175342	R	<no descrition>
ENSCJAG00000027300	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	106315655	106315760	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027474	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	129906514	129906620	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029102	NOVEL	miRNA	ENSCJAG00000029102	chromosome:C_jacchus3.2.1:8:1:128169293:1	28526347	28526431	D	<no descrition>
ENSCJAG00000027494	NOVEL	miRNA	ENSCJAG00000027494	chromosome:C_jacchus3.2.1:9:1:124281992:1	41333793	41333868	D	<no descrition>
ENSCJAG00000038047	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	48645815	48646112	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024770	NOVEL	miRNA	ENSCJAG00000024770	chromosome:C_jacchus3.2.1:X:1:142054208:1	44957895	44957990	D	<no descrition>
ENSCJAG00000028685	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1127487	1127584	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000030254	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	35050345	35050455	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025608	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	90856891	90856991	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031841	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16327674	16327776	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032880	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	32264672	32264770	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035893	NOVEL	miRNA	ENSCJAG00000035893	chromosome:C_jacchus3.2.1:17:1:74750902:1	73910830	73910907	R	<no descrition>
ENSCJAG00000035594	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL289146.1:1:11547:1	677	793	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024225	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	20779623	20779725	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029607	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	25408984	25409102	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024310	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	154570929	154571036	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028739	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	173371424	173371751	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033274	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	115585795	115585900	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035843	NOVEL	miRNA	ENSCJAG00000035843	chromosome:C_jacchus3.2.1:3:1:190850796:1	88638887	88638985	R	<no descrition>
ENSCJAG00000029257	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	109788912	109789023	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035720	NOVEL	miRNA	ENSCJAG00000035720	chromosome:C_jacchus3.2.1:10:1:132174527:1	126984406	126984521	R	<no descrition>
ENSCJAG00000031818	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	147626449	147626551	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029098	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126871924	126871998	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000027041	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	44322762	44322868	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032010	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	98517062	98517167	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028134	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	27875958	27876064	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031493	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	93931229	93931331	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034635	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	44996013	44996112	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032973	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:1:1:210400635:1	170306582	170306664	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000037444	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	115062768	115063062	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036700	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	88591806	88592075	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024896	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	109307685	109307789	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037928	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	4409773	4410068	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024803	NOVEL	miRNA	ENSCJAG00000024803	chromosome:C_jacchus3.2.1:8:1:128169293:1	116496068	116496175	D	<no descrition>
ENSCJAG00000035650	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	108041530	108041826	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036791	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL287838.1:1:39910:1	23531	23625	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032264	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	118315032	118315145	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024581	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	99145588	99145698	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024132	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	73343605	73343724	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026508	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	67750940	67751043	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031695	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:1:1:210400635:1	12079604	12079677	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000026698	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	58718097	58718203	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032574	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	118287204	118287309	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029239	NOVEL	miRNA	ENSCJAG00000029239	chromosome:C_jacchus3.2.1:X:1:142054208:1	128626788	128626881	D	<no descrition>
ENSCJAG00000030221	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	74931279	74931371	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028071	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	77901383	77901487	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025010	NOVEL	miRNA	ENSCJAG00000025010	chromosome:C_jacchus3.2.1:22:1:49145316:1	44886956	44887042	D	<no descrition>
ENSCJAG00000030920	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:2:1:204313951:1	18982850	18983040	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000028873	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	131514900	131515064	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023783	NOVEL	snoRNA	SNORD102	chromosome:C_jacchus3.2.1:5:1:159171411:1	140198930	140199000	D	Small nucleolar RNA SNORD102 [Source:RFAM;Acc:RF00187]
ENSCJAG00000027555	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	33922678	33922784	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027312	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	62336447	62336542	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034886	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	24039851	24039968	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037052	NOVEL	miRNA	ENSCJAG00000037052	chromosome:C_jacchus3.2.1:11:1:130397257:1	124031341	124031425	R	<no descrition>
ENSCJAG00000032848	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	78338230	78338321	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028971	NOVEL	snoRNA	SNORA68	chromosome:C_jacchus3.2.1:22:1:49145316:1	27097640	27097770	R	Small nucleolar RNA SNORA68 [Source:RFAM;Acc:RF00263]
ENSCJAG00000030783	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	47228944	47229050	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027075	NOVEL	miRNA	ENSCJAG00000027075	chromosome:C_jacchus3.2.1:2:1:204313951:1	42330392	42330453	R	<no descrition>
ENSCJAG00000030089	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	121821717	121822042	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029809	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	16654311	16654428	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033578	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	16672523	16672623	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026237	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	188892674	188892786	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023713	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	126371426	126371532	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028881	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	134536962	134537068	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026539	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	47695181	47695319	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027730	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	23742123	23742224	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035661	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	38656930	38657226	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028310	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	119303241	119303342	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023605	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	120232076	120232170	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036968	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	89814305	89814596	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029649	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	76185613	76185716	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030674	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	79133073	79133185	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029333	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	101864513	101864619	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031750	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	23162106	23162204	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027103	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	115887099	115887201	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029541	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126899280	126899351	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000035695	NOVEL	miRNA	ENSCJAG00000035695	chromosome:C_jacchus3.2.1:22:1:49145316:1	9623273	9623336	D	<no descrition>
ENSCJAG00000032700	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	15018759	15018908	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027207	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:7:1:155834243:1	132061316	132061479	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028248	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	44072850	44072952	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034117	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	14892725	14892837	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036852	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	32009187	32009483	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031033	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:13:1:117903854:1	83637935	83638240	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036613	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	7353267	7353562	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036098	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	193885310	193885602	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035625	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL285226.1:1:19201:1	12979	13069	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028793	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	65805787	65805892	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028374	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	8517632	8517738	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032913	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	79586363	79586480	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035767	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	130520	130626	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035756	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285936.1:1:30883:1	6534	6640	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036826	NOVEL	miRNA	ENSCJAG00000036826	chromosome:C_jacchus3.2.1:17:1:74750902:1	19087218	19087302	R	<no descrition>
ENSCJAG00000032992	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	158365971	158366072	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030544	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	86246717	86246827	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024403	NOVEL	miRNA	ENSCJAG00000024403	chromosome:C_jacchus3.2.1:7:1:155834243:1	75280894	75280985	D	<no descrition>
ENSCJAG00000025428	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	134915583	134915738	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026153	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	94818227	94818333	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025859	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	7392063	7392226	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029447	NOVEL	snoRNA	SNORA15	chromosome:C_jacchus3.2.1:17:1:74750902:1	74572619	74572753	D	Small nucleolar RNA SNORA15 [Source:RFAM;Acc:RF00398]
ENSCJAG00000026664	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	156656859	156656977	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035775	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	40226012	40226294	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034050	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	69412949	69413098	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035080	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	27885165	27885398	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026561	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	184292195	184292301	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029015	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	55453436	55453540	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027576	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1154148	1154239	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000029933	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	18980543	18980649	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024027	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:18:1:47448759:1	1105497	1105660	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030135	NOVEL	miRNA	ENSCJAG00000030135	chromosome:C_jacchus3.2.1:12:1:121768101:1	39570291	39570362	R	<no descrition>
ENSCJAG00000025558	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:3:1:190850796:1	19474157	19474260	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000036428	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	72583	72693	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033415	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	148894174	148894280	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027857	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	48124271	48124372	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024767	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1264140	1264221	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000028101	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	67180247	67180348	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034357	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:22:1:49145316:1	20246688	20246827	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032255	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	124595070	124595352	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024972	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	56936289	56936390	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024565	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	149767468	149767574	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037174	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	134098259	134098555	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023519	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	52399383	52399481	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024374	NOVEL	snoRNA	SNORA79	chromosome:C_jacchus3.2.1:10:1:132174527:1	106696088	106696231	R	Small nucleolar RNA SNORA79 [Source:RFAM;Acc:RF00600]
ENSCJAG00000025337	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	129009615	129009701	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027884	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	6929050	6929168	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033239	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	40113114	40113226	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032682	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	21504247	21504350	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026427	NOVEL	miRNA	ENSCJAG00000026427	chromosome:C_jacchus3.2.1:10:1:132174527:1	126957713	126957812	D	<no descrition>
ENSCJAG00000025777	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	179668391	179668497	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037480	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	99586	99691	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025044	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:7:1:155834243:1	26766358	26766432	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000027286	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	19031771	19031877	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033260	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	1897218	1897300	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032089	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	152775167	152775278	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028557	NOVEL	miRNA	ENSCJAG00000028557	chromosome:C_jacchus3.2.1:9:1:124281992:1	43282720	43282818	D	<no descrition>
ENSCJAG00000032522	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:14:1:108792865:1	21202462	21202522	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037702	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	43751850	43752147	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034870	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	8976144	8976246	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028408	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1156916	1157007	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000027975	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	117687279	117687383	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030923	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	43298984	43299084	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025368	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	50239134	50239234	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028548	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	88256042	88256139	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032630	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	103445335	103445438	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027741	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	39536692	39536855	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000038091	NOVEL	miRNA	ENSCJAG00000038091	chromosome:C_jacchus3.2.1:9:1:124281992:1	42598172	42598253	R	<no descrition>
ENSCJAG00000031094	NOVEL	miRNA	ENSCJAG00000031094	chromosome:C_jacchus3.2.1:11:1:130397257:1	125166398	125166480	R	<no descrition>
ENSCJAG00000029322	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	76714376	76714482	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027845	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	152543866	152543967	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033520	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	117302121	117302228	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030864	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	72986813	72986923	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024459	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	69767684	69767849	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030507	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	47043392	47043488	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030756	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34067	34230	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000038024	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	166693102	166693398	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030807	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	67120686	67120789	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026380	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	83305802	83305902	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025965	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	54981807	54981914	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036900	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	20733911	20734207	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024437	NOVEL	miRNA	ENSCJAG00000024437	chromosome:C_jacchus3.2.1:19:1:49578535:1	4541319	4541403	D	<no descrition>
ENSCJAG00000033523	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:14:1:108792865:1	92684965	92685076	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035146	NOVEL	miRNA	ENSCJAG00000035146	chromosome:C_jacchus3.2.1:21:1:50472720:1	39036452	39036526	D	<no descrition>
ENSCJAG00000029547	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	93591236	93591342	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031438	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	82693019	82693324	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026478	NOVEL	miRNA	ENSCJAG00000026478	chromosome:C_jacchus3.2.1:10:1:132174527:1	126973559	126973640	D	<no descrition>
ENSCJAG00000038097	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	43401961	43402256	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026886	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	112758253	112758359	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029105	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	30953734	30953837	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035732	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	8369768	8370062	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031898	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	63521126	63521232	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030703	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	66362661	66362767	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026756	NOVEL	miRNA	ENSCJAG00000026756	chromosome:C_jacchus3.2.1:X:1:142054208:1	65949352	65949436	R	<no descrition>
ENSCJAG00000037575	NOVEL	miRNA	ENSCJAG00000037575	chromosome:C_jacchus3.2.1:2:1:204313951:1	10926306	10926381	D	<no descrition>
ENSCJAG00000026449	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	1927952	1928115	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037072	NOVEL	miRNA	ENSCJAG00000037072	chromosome:C_jacchus3.2.1:13:1:117903854:1	103746871	103746948	R	<no descrition>
ENSCJAG00000029022	NOVEL	miRNA	ENSCJAG00000029022	chromosome:C_jacchus3.2.1:6:1:158406734:1	119547609	119547700	R	<no descrition>
ENSCJAG00000025041	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	102199125	102199231	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031558	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	20191097	20191192	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034852	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:4:1:171630274:1	94352390	94352461	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000030173	NOVEL	miRNA	ENSCJAG00000030173	chromosome:C_jacchus3.2.1:10:1:132174527:1	36201160	36201222	R	<no descrition>
ENSCJAG00000036962	NOVEL	miRNA	ENSCJAG00000036962	chromosome:C_jacchus3.2.1:6:1:158406734:1	109159944	109160060	R	<no descrition>
ENSCJAG00000029227	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	21383125	21383228	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030977	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	68963808	68963919	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033819	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	83641371	83641484	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036748	NOVEL	miRNA	ENSCJAG00000036748	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1904763	1904839	R	<no descrition>
ENSCJAG00000032861	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	134960121	134960227	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037969	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	11851765	11852061	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032744	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	150610997	150611080	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028388	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	6731339	6731449	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028468	NOVEL	snoRNA	SCARNA15	chromosome:C_jacchus3.2.1:6:1:158406734:1	22431148	22431274	D	Small Cajal body specific RNA 15 [Source:RFAM;Acc:RF00426]
ENSCJAG00000034172	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	90644438	90644545	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027088	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	186237751	186237861	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038101	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	28305140	28305434	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024502	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	99776024	99776130	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034236	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	10425357	10425478	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026897	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	13017151	13017254	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031765	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	37661231	37661327	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035852	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	14354808	14355095	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037604	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	95944642	95944940	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036381	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	86252722	86252838	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036902	NOVEL	miRNA	ENSCJAG00000036902	chromosome:C_jacchus3.2.1:7:1:155834243:1	40814325	40814387	R	<no descrition>
ENSCJAG00000032382	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	187429339	187429400	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000028683	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	1349757	1349867	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025381	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:13:1:117903854:1	28597196	28597309	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037147	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL285785.1:1:54187:1	24594	24733	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035991	NOVEL	miRNA	ENSCJAG00000035991	chromosome:C_jacchus3.2.1:3:1:190850796:1	161148596	161148709	R	<no descrition>
ENSCJAG00000027513	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	78041345	78041448	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034537	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	2562724	2562819	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036580	NOVEL	miRNA	ENSCJAG00000036580	chromosome:C_jacchus3.2.1:15:1:98464013:1	39033333	39033416	D	<no descrition>
ENSCJAG00000032754	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	88402843	88402947	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035805	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	68256066	68256362	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025043	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	192724674	192724772	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024483	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	23895129	23895231	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032976	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	95696502	95696594	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027765	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	135624116	135624239	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000029119	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	64793878	64793990	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034845	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:12:1:121768101:1	88567317	88567388	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000030847	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	18868128	18868290	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026804	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:16:1:96796970:1	3870148	3870217	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000024837	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	73374869	73374970	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024524	NOVEL	snoRNA	snoU2-30	chromosome:C_jacchus3.2.1:11:1:130397257:1	44119060	44119129	R	Small nucleolar RNA U2-30 [Source:RFAM;Acc:RF00493]
ENSCJAG00000033455	NOVEL	miRNA	ENSCJAG00000033455	chromosome:C_jacchus3.2.1:X:1:142054208:1	41775706	41775776	R	<no descrition>
ENSCJAG00000026090	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	26897781	26897899	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023504	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	159726866	159727027	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025227	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	185474395	185474665	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033579	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	31478784	31478891	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034993	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:10:1:132174527:1	98442141	98442204	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030251	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	86005802	86005903	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036735	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	88403679	88403975	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034124	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	16580056	16580294	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028566	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	22998454	22998558	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025355	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	181491054	181491187	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027669	NOVEL	miRNA	ENSCJAG00000027669	chromosome:C_jacchus3.2.1:6:1:158406734:1	123177966	123178115	R	<no descrition>
ENSCJAG00000027725	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	26204240	26204591	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032231	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	114104387	114104517	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026626	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	111372679	111372778	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026203	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:22:1:49145316:1	31560347	31560481	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000034689	NOVEL	miRNA	ENSCJAG00000034689	chromosome:C_jacchus3.2.1:2:1:204313951:1	159564025	159564108	R	<no descrition>
ENSCJAG00000032448	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	105738624	105738727	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036787	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	35974137	35974433	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030722	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	80290761	80290873	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028306	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:3:1:190850796:1	111344933	111345048	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036488	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	55575681	55575976	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029091	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	118578483	118578583	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034769	NOVEL	miRNA	ENSCJAG00000034769	chromosome:C_jacchus3.2.1:6:1:158406734:1	68500595	68500679	R	<no descrition>
ENSCJAG00000023468	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	47594241	47594345	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025323	NOVEL	miRNA	ENSCJAG00000025323	chromosome:C_jacchus3.2.1:9:1:124281992:1	90346038	90346103	D	<no descrition>
ENSCJAG00000026289	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126900968	126901039	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000031472	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:4:1:171630274:1	1053073	1053135	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030788	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	97104217	97104323	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028116	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	110825214	110825320	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023467	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	47550632	47550738	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030890	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1108680	1108774	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000028130	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	5352353	5352464	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024345	NOVEL	miRNA	ENSCJAG00000024345	chromosome:C_jacchus3.2.1:1:1:210400635:1	84300206	84300343	D	<no descrition>
ENSCJAG00000026681	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	54591006	54591169	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036971	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	150221082	150221378	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026935	NOVEL	snoRNA	SNORA1	chromosome:C_jacchus3.2.1:12:1:121768101:1	23213673	23213804	R	Small nucleolar RNA SNORA1 [Source:RFAM;Acc:RF00408]
ENSCJAG00000031581	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:2:1:204313951:1	20412277	20412402	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000030448	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	14410794	14410957	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033502	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	24953358	24953465	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031117	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	98503904	98504037	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029295	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	32638252	32638370	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026254	NOVEL	snoRNA	SNORA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	82949752	82949886	R	Small nucleolar RNA SNORA1 [Source:RFAM;Acc:RF00408]
ENSCJAG00000025733	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	111033161	111033256	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030799	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	55396396	55396491	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026118	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	58640810	58640922	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034226	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	35264917	35265047	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028464	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:9:1:124281992:1	63523068	63523202	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000032473	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:17:1:74750902:1	73975355	73975434	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000028837	NOVEL	miRNA	ENSCJAG00000028837	chromosome:C_jacchus3.2.1:9:1:124281992:1	18818093	18818160	D	<no descrition>
ENSCJAG00000035630	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	59345379	59345674	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031313	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	62615005	62615100	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029750	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:2:1:204313951:1	34911772	34911871	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000031053	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	154470028	154470142	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033712	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	116309883	116309984	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033762	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	10739635	10739707	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034690	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	35294234	35294336	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025156	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	5833222	5833330	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037386	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	53057600	53057895	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030396	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	28741070	28741233	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035761	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	5061672	5061972	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029338	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126898332	126898403	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000026750	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	12425588	12425693	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033664	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	86314188	86314298	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036077	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	21787292	21787587	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028191	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	77256150	77256259	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024064	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	129499208	129499449	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024585	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	79890964	79891092	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030511	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	26199154	26199263	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030618	NOVEL	miRNA	ENSCJAG00000030618	chromosome:C_jacchus3.2.1:1:1:210400635:1	158407340	158407413	D	<no descrition>
ENSCJAG00000033377	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	47353237	47353366	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032381	NOVEL	miRNA	ENSCJAG00000032381	chromosome:C_jacchus3.2.1:X:1:142054208:1	134313892	134314019	R	<no descrition>
ENSCJAG00000029270	NOVEL	miRNA	ENSCJAG00000029270	chromosome:C_jacchus3.2.1:1:1:210400635:1	184688928	184689003	R	<no descrition>
ENSCJAG00000030374	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	122735925	122736031	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024379	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	77977149	77977289	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025114	NOVEL	snoRNA	SNORA54	chromosome:C_jacchus3.2.1:11:1:130397257:1	127464595	127464717	D	Small nucleolar RNA SNORA54 [Source:RFAM;Acc:RF00430]
ENSCJAG00000024292	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1307588	1307669	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000036863	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	74937070	74937366	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034195	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	37696332	37696426	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036133	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286028.1:1:40673:1	3571	3689	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036796	NOVEL	miRNA	ENSCJAG00000036796	chromosome:C_jacchus3.2.1:5:1:159171411:1	60053665	60053756	R	<no descrition>
ENSCJAG00000037400	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	136767037	136767333	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026487	NOVEL	snoRNA	SNORA55	chromosome:C_jacchus3.2.1:7:1:155834243:1	73991165	73991299	R	Small nucleolar RNA SNORA55 [Source:RFAM;Acc:RF00431]
ENSCJAG00000036644	NOVEL	miRNA	ENSCJAG00000036644	chromosome:C_jacchus3.2.1:12:1:121768101:1	67083170	67083247	D	<no descrition>
ENSCJAG00000028000	NOVEL	miRNA	ENSCJAG00000028000	chromosome:C_jacchus3.2.1:15:1:98464013:1	29125531	29125620	D	<no descrition>
ENSCJAG00000036006	NOVEL	miRNA	ENSCJAG00000036006	chromosome:C_jacchus3.2.1:3:1:190850796:1	40051514	40051601	D	<no descrition>
ENSCJAG00000027395	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	27720102	27720220	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030323	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	82052787	82052893	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031761	NOVEL	snoRNA	SNORA74	chromosome:C_jacchus3.2.1:5:1:159171411:1	67373625	67373804	R	Small nucleolar RNA SNORA74 [Source:RFAM;Acc:RF00090]
ENSCJAG00000024160	NOVEL	snoRNA	SNORA30	chromosome:C_jacchus3.2.1:5:1:159171411:1	127661693	127661821	D	Small nucleolar RNA SNORA30/SNORA37 family [Source:RFAM;Acc:RF00415]
ENSCJAG00000034334	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	116220695	116220802	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033275	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	83981242	83981351	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029657	NOVEL	snoRNA	SNORD103	chromosome:C_jacchus3.2.1:7:1:155834243:1	65141020	65141104	R	Small nucleolar RNA SNORD103/SNORD85 [Source:RFAM;Acc:RF00188]
ENSCJAG00000029174	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	31430088	31430191	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037528	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	111531173	111531469	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023909	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	23827676	23827794	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033709	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	59311676	59311826	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028904	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	72973238	72973356	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026020	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	115697453	115697554	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035134	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	123339055	123339175	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028412	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	29215170	29215276	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024199	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	6436709	6436815	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025244	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:8:1:128169293:1	70148665	70148739	R	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000032762	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	115410706	115410808	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024809	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	68932677	68932782	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026439	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	29126672	29126778	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037723	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	53390690	53390986	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037117	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	57988788	57989084	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026924	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	31198523	31198626	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035116	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	172068237	172068348	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027229	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	2771184	2771290	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032699	NOVEL	snoRNA	SNORA15	chromosome:C_jacchus3.2.1:1:1:210400635:1	183677551	183677668	D	Small nucleolar RNA SNORA15 [Source:RFAM;Acc:RF00398]
ENSCJAG00000028136	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	45497556	45497657	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026281	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	23788540	23788646	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024496	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126904820	126904889	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000032818	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	4685116	4685222	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032032	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	116415582	116415683	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034355	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	20271363	20271464	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024628	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	49125036	49125144	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037090	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	27898835	27899120	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036712	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	36308417	36308707	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037997	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	87066469	87066761	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024547	NOVEL	snoRNA	SNORA75	chromosome:C_jacchus3.2.1:3:1:190850796:1	114682133	114682267	R	Small nucleolar RNA SNORA75 [Source:RFAM;Acc:RF00072]
ENSCJAG00000032678	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	19168837	19168943	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034907	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	28338367	28338481	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030361	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	64273130	64273346	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000033030	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	41966562	41966639	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000027795	NOVEL	snoRNA	SNORD56	chromosome:C_jacchus3.2.1:5:1:159171411:1	8445775	8445845	D	Small nucleolar RNA SNORD56 [Source:RFAM;Acc:RF00275]
ENSCJAG00000026889	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	183721307	183721404	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024509	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1299798	1299879	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000025876	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	1495983	1496086	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036328	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	42824407	42824703	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026641	NOVEL	miRNA	ENSCJAG00000026641	chromosome:C_jacchus3.2.1:12:1:121768101:1	12688602	12688688	R	<no descrition>
ENSCJAG00000035777	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	13854356	13854648	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030710	NOVEL	miRNA	ENSCJAG00000030710	chromosome:C_jacchus3.2.1:1:1:210400635:1	122597710	122597803	D	<no descrition>
ENSCJAG00000037501	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	71355391	71355688	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028666	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	100238017	100238123	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033003	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	75351453	75351564	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032459	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	83055762	83055794	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023655	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	82594168	82594269	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030815	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:X:1:142054208:1	13868270	13868409	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000037496	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	35292946	35293242	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031674	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	147187516	147187624	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034043	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	36419100	36419220	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027889	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:10:1:132174527:1	74438127	74438260	R	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000025657	NOVEL	miRNA	ENSCJAG00000025657	chromosome:C_jacchus3.2.1:16:1:96796970:1	25542666	25542745	D	<no descrition>
ENSCJAG00000026541	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	22578532	22578633	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024195	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:X:1:142054208:1	52769848	52769976	D	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000029624	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	88602473	88602579	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023801	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	76384176	76384370	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000035892	NOVEL	miRNA	ENSCJAG00000035892	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	54477	54568	R	<no descrition>
ENSCJAG00000032083	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	44875074	44875179	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029880	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	122825578	122825684	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033843	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	708249	708355	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024697	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	46850303	46850398	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035706	NOVEL	miRNA	ENSCJAG00000035706	chromosome:C_jacchus3.2.1:6:1:158406734:1	133158438	133158525	R	<no descrition>
ENSCJAG00000028490	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	28432639	28432740	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037643	NOVEL	snoRNA	snoU83B	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	5593	5684	R	Small nucleolar RNA U83B [Source:RFAM;Acc:RF00593]
ENSCJAG00000028605	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	79492213	79492328	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028961	NOVEL	snoRNA	SNORA3	chromosome:C_jacchus3.2.1:3:1:190850796:1	121448748	121448872	R	Small nucleolar RNA SNORA3/SNORA45 family [Source:RFAM;Acc:RF00334]
ENSCJAG00000036143	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	470775	470886	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027323	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	74282579	74282680	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037263	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	11887591	11887885	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028078	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	36078459	36078565	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032413	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	151082448	151082557	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026872	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	625808	625919	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023544	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:7:1:155834243:1	111503764	111503835	D	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000026992	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:21:1:50472720:1	6519010	6519135	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000033743	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	66861260	66861345	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037583	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	4432976	4433273	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031276	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	150968118	150968194	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026078	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	36453152	36453481	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037478	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	46178273	46178569	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032854	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	21426208	21426312	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036690	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	9810104	9810399	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025386	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	52265798	52265897	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037571	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	48485980	48486276	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034879	NOVEL	miRNA	ENSCJAG00000034879	chromosome:C_jacchus3.2.1:13:1:117903854:1	17041711	17041835	D	<no descrition>
ENSCJAG00000035655	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	74959091	74959387	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030585	NOVEL	miRNA	ENSCJAG00000030585	chromosome:C_jacchus3.2.1:4:1:171630274:1	25683308	25683405	D	<no descrition>
ENSCJAG00000035689	NOVEL	miRNA	ENSCJAG00000035689	chromosome:C_jacchus3.2.1:9:1:124281992:1	70669526	70669622	R	<no descrition>
ENSCJAG00000023758	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	92185082	92185184	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033732	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	49889851	49889958	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027770	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	94034344	94034450	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034994	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	127759801	127759910	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037103	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	4528246	4528531	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027420	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	140313173	140313279	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025913	NOVEL	snoRNA	SNORA62	chromosome:C_jacchus3.2.1:13:1:117903854:1	19353486	19353640	R	Small nucleolar RNA SNORA62/SNORA6 family [Source:RFAM;Acc:RF00091]
ENSCJAG00000027657	NOVEL	snoRNA	SNORA47	chromosome:C_jacchus3.2.1:3:1:190850796:1	137683830	137683967	D	Small nucleolar RNA SNORA47 [Source:RFAM;Acc:RF01234]
ENSCJAG00000025259	NOVEL	miRNA	ENSCJAG00000025259	chromosome:C_jacchus3.2.1:9:1:124281992:1	103042844	103042985	R	<no descrition>
ENSCJAG00000036499	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	51503759	51504048	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027856	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	110195134	110195240	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035931	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	88695770	88696066	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026514	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	123819366	123819472	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024518	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	62984105	62984220	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000025960	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	155121296	155121437	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028675	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	105866333	105866486	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026567	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	16280096	16280195	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033514	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	113089989	113090092	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031511	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	50234084	50234195	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028634	NOVEL	miRNA	ENSCJAG00000028634	chromosome:C_jacchus3.2.1:4:1:171630274:1	132879975	132880061	R	<no descrition>
ENSCJAG00000030719	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	51169534	51169640	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028312	NOVEL	snoRNA	SNORA27	chromosome:C_jacchus3.2.1:2:1:204313951:1	37476581	37476707	D	Small nucleolar RNA SNORA27 [Source:RFAM;Acc:RF00443]
ENSCJAG00000033992	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	43782364	43782467	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035757	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	90708765	90709060	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036564	NOVEL	miRNA	ENSCJAG00000036564	chromosome:C_jacchus3.2.1:2:1:204313951:1	117940631	117940730	D	<no descrition>
ENSCJAG00000024785	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	44425737	44425837	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032998	NOVEL	snoRNA	snoZ6	chromosome:C_jacchus3.2.1:21:1:50472720:1	48262636	48262676	D	Z6 small nucleolar RNA [Source:RFAM;Acc:RF00285]
ENSCJAG00000029145	NOVEL	miRNA	ENSCJAG00000029145	chromosome:C_jacchus3.2.1:14:1:108792865:1	66515887	66516021	R	<no descrition>
ENSCJAG00000030371	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:15:1:98464013:1	8383559	8383691	D	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000026459	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	108020821	108020993	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030852	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	12653413	12653526	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026803	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	50888255	50888356	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000004528	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	37576430	37576576	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032695	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	31550180	31550312	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030300	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	30389996	30390102	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032676	NOVEL	snoRNA	snoZ6	chromosome:C_jacchus3.2.1:21:1:50472720:1	48260771	48260823	D	Z6 small nucleolar RNA [Source:RFAM;Acc:RF00285]
ENSCJAG00000037332	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288461.1:1:10205:1	3889	3995	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025940	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	66489613	66489714	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028360	NOVEL	miRNA	ENSCJAG00000028360	chromosome:C_jacchus3.2.1:4:1:171630274:1	12811699	12811794	R	<no descrition>
ENSCJAG00000036083	NOVEL	miRNA	ENSCJAG00000036083	chromosome:C_jacchus3.2.1:12:1:121768101:1	84956771	84956857	R	<no descrition>
ENSCJAG00000026859	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	2373256	2373418	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036652	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	171666510	171666806	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027219	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	67194991	67195306	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036216	NOVEL	snoRNA	U3	scaffold:C_jacchus3.2.1:GL285106.1:1:44946:1	43207	43421	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025413	NOVEL	miRNA	ENSCJAG00000025413	chromosome:C_jacchus3.2.1:X:1:142054208:1	122082046	122082141	R	<no descrition>
ENSCJAG00000031612	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88711101	88711204	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025584	NOVEL	snoRNA	SCARNA8	chromosome:C_jacchus3.2.1:1:1:210400635:1	121517287	121517421	D	Small Cajal body specific RNA 8 [Source:RFAM;Acc:RF00286]
ENSCJAG00000032995	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	63821525	63821636	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029123	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	166324289	166324397	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034898	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	32222388	32222489	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024182	NOVEL	miRNA	ENSCJAG00000024182	chromosome:C_jacchus3.2.1:15:1:98464013:1	90815973	90816061	R	<no descrition>
ENSCJAG00000037939	NOVEL	miRNA	ENSCJAG00000037939	chromosome:C_jacchus3.2.1:14:1:108792865:1	35730173	35730264	D	<no descrition>
ENSCJAG00000026055	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	45726013	45726124	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027742	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	200229830	200229910	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027392	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	75235288	75235386	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028704	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	94393460	94393561	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031146	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	53422519	53422625	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035961	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	48930759	48931055	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025251	NOVEL	snoRNA	SNORD50	chromosome:C_jacchus3.2.1:4:1:171630274:1	84654239	84654308	R	Small nucleolar RNA SNORD50 [Source:RFAM;Acc:RF00278]
ENSCJAG00000028984	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	99667373	99667477	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028434	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:11:1:130397257:1	9463720	9463842	R	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000028170	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	70789052	70789157	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036367	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	14869218	14869513	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034719	NOVEL	snoRNA	SNORA44	chromosome:C_jacchus3.2.1:18:1:47448759:1	5530522	5530627	R	Small nucleolar RNA SNORA44 [Source:RFAM;Acc:RF00405]
ENSCJAG00000023595	NOVEL	miRNA	ENSCJAG00000023595	chromosome:C_jacchus3.2.1:15:1:98464013:1	24269814	24269889	R	<no descrition>
ENSCJAG00000026743	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	27680955	27681057	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027062	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	72525814	72525932	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037116	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	6918315	6918611	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036473	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285806.1:1:82370:1	12037	12189	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029592	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	133610789	133610950	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030139	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:1:1:210400635:1	126742215	126742348	D	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000031230	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	26757710	26757805	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036346	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	94540410	94540706	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026737	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	4367481	4367587	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028614	NOVEL	miRNA	ENSCJAG00000028614	chromosome:C_jacchus3.2.1:9:1:124281992:1	42960046	42960141	D	<no descrition>
ENSCJAG00000035421	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	40757343	40757438	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037727	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	27569450	27569745	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029179	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	28917947	28918053	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031385	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	21062574	21062687	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024082	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	48248068	48248173	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030839	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	95206561	95206724	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028033	NOVEL	snoRNA	SNORD64	chromosome:C_jacchus3.2.1:6:1:158406734:1	1046468	1046534	D	Small Nucleolar RNA SNORD64 [Source:RFAM;Acc:RF00570]
ENSCJAG00000031524	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	106602936	106603216	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023723	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	2895663	2895762	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030414	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	31678399	31678496	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035769	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	131489128	131489424	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037573	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	192477124	192477418	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036851	NOVEL	miRNA	ENSCJAG00000036851	chromosome:C_jacchus3.2.1:5:1:159171411:1	158733211	158733302	R	<no descrition>
ENSCJAG00000024202	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	50865085	50865195	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038102	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	129791536	129791832	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034424	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	64579370	64579501	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034864	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	33175777	33175898	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030027	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	84176232	84176347	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033330	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	105775442	105775546	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029036	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	12037696	12037798	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029805	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	72091989	72092095	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033111	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	37102435	37102538	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027739	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	26419998	26420099	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024845	NOVEL	snoRNA	SNORD23	chromosome:C_jacchus3.2.1:13:1:117903854:1	58609917	58610020	R	Small nucleolar RNA SNORD23 [Source:RFAM;Acc:RF00603]
ENSCJAG00000037725	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	4428876	4429171	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038113	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288868.1:1:14384:1	2726	2829	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033497	NOVEL	miRNA	ENSCJAG00000033497	chromosome:C_jacchus3.2.1:4:1:171630274:1	30980648	30980717	D	<no descrition>
ENSCJAG00000037383	NOVEL	miRNA	ENSCJAG00000037383	chromosome:C_jacchus3.2.1:20:1:44557958:1	27047794	27047877	R	<no descrition>
ENSCJAG00000025005	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	91648519	91648625	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027260	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	123865296	123865436	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030622	NOVEL	miRNA	ENSCJAG00000030622	chromosome:C_jacchus3.2.1:19:1:49578535:1	10195499	10195591	D	<no descrition>
ENSCJAG00000036072	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	35662601	35662897	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028383	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	35707266	35707374	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031927	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:13:1:117903854:1	63851761	63851855	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025443	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:16:1:96796970:1	12035069	12035184	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037729	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	51553847	51554143	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025131	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	15704574	15704679	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030134	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	92546588	92546832	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024811	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	1093954	1094066	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026749	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	114628603	114628715	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036086	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	9985065	9985361	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036829	NOVEL	miRNA	ENSCJAG00000036829	scaffold:C_jacchus3.2.1:GL288158.1:1:20649:1	2876	2977	R	<no descrition>
ENSCJAG00000024257	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	59903590	59903680	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027325	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	64046791	64047085	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028594	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	72514484	72514590	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025178	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	3531665	3531805	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034968	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	117855236	117855346	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037449	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286344.1:1:14317:1	6504	6602	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030299	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	105901829	105901930	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029420	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	56427086	56427249	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035053	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	17448950	17449056	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037886	NOVEL	miRNA	ENSCJAG00000037886	chromosome:C_jacchus3.2.1:12:1:121768101:1	34832406	34832478	D	<no descrition>
ENSCJAG00000027824	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	36406326	36406444	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023500	NOVEL	miRNA	ENSCJAG00000023500	chromosome:C_jacchus3.2.1:10:1:132174527:1	102768661	102768740	R	<no descrition>
ENSCJAG00000025129	NOVEL	misc_RNA	NRON	chromosome:C_jacchus3.2.1:1:1:210400635:1	170285342	170285711	R	ncRNA Repressor of NFAT (nuclear factor of activated T cells) [Source:RFAM;Acc:RF00636]
ENSCJAG00000023537	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	35320785	35320891	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030324	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	107799730	107799829	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024952	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1290880	1290961	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000024891	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	141515062	141515202	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025888	NOVEL	miRNA	ENSCJAG00000025888	chromosome:C_jacchus3.2.1:8:1:128169293:1	109241193	109241320	R	<no descrition>
ENSCJAG00000030928	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	59930477	59930583	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026969	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	93531663	93532012	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024546	NOVEL	miRNA	ENSCJAG00000024546	chromosome:C_jacchus3.2.1:X:1:142054208:1	103223585	103223695	D	<no descrition>
ENSCJAG00000026350	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	77456966	77457072	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035543	NOVEL	miRNA	ENSCJAG00000035543	chromosome:C_jacchus3.2.1:X:1:142054208:1	128438699	128438789	R	<no descrition>
ENSCJAG00000025767	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	105909106	105909207	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034022	NOVEL	snoRNA	snoZ185	chromosome:C_jacchus3.2.1:8:1:128169293:1	85307388	85307476	D	Small nucleolar RNA Z185 [Source:RFAM;Acc:RF00320]
ENSCJAG00000038008	NOVEL	miRNA	ENSCJAG00000038008	chromosome:C_jacchus3.2.1:22:1:49145316:1	4786872	4786940	D	<no descrition>
ENSCJAG00000032677	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	20553266	20553367	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036589	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	23597917	23598212	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037156	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286226.1:1:129224:1	58096	58202	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030591	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	13876532	13876633	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029606	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	25768352	25768455	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031091	NOVEL	miRNA	ENSCJAG00000031091	chromosome:C_jacchus3.2.1:9:1:124281992:1	45995088	45995160	D	<no descrition>
ENSCJAG00000025662	NOVEL	miRNA	ENSCJAG00000025662	chromosome:C_jacchus3.2.1:3:1:190850796:1	7321882	7321967	R	<no descrition>
ENSCJAG00000033595	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	49444379	49444485	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035749	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	84449992	84450290	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030123	NOVEL	miRNA	ENSCJAG00000030123	chromosome:C_jacchus3.2.1:15:1:98464013:1	62324717	62324795	R	<no descrition>
ENSCJAG00000032789	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	74388775	74388876	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024750	NOVEL	miRNA	ENSCJAG00000024750	chromosome:C_jacchus3.2.1:3:1:190850796:1	186600582	186600706	D	<no descrition>
ENSCJAG00000024471	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	46205641	46205747	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023775	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	1090763	1090866	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035590	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL287442.1:1:64216:1	23994	24100	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024906	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	90532998	90533116	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028599	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	11595782	11596097	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028342	NOVEL	miRNA	ENSCJAG00000028342	chromosome:C_jacchus3.2.1:7:1:155834243:1	6293940	6294027	D	<no descrition>
ENSCJAG00000025614	NOVEL	snoRNA	SNORA35	chromosome:C_jacchus3.2.1:X:1:142054208:1	103069767	103069893	D	Small nucleolar RNA SNORA35 [Source:RFAM;Acc:RF00566]
ENSCJAG00000024254	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	26663569	26663675	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030138	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	112154923	112155061	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025826	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1280389	1280470	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000029339	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	45590638	45590740	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036986	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	36782227	36782519	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027031	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	81674708	81674814	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029484	NOVEL	snoRNA	SNORA22	chromosome:C_jacchus3.2.1:17:1:74750902:1	74566172	74566305	D	Small nucleolar RNA SNORA22 [Source:RFAM;Acc:RF00414]
ENSCJAG00000025745	NOVEL	miRNA	ENSCJAG00000025745	chromosome:C_jacchus3.2.1:X:1:142054208:1	134454650	134454748	R	<no descrition>
ENSCJAG00000033880	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	78520264	78520357	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034835	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	13493760	13493868	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035894	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	26399435	26399732	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036528	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	56726152	56726448	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037373	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	27513424	27513718	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037956	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	13386666	13386962	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025562	NOVEL	snoRNA	SNORD127	chromosome:C_jacchus3.2.1:10:1:132174527:1	69683752	69683837	D	Small nucleolar RNA SNORD127 [Source:RFAM;Acc:RF01186]
ENSCJAG00000029938	NOVEL	snoRNA	SNORA30	chromosome:C_jacchus3.2.1:13:1:117903854:1	92239429	92239557	R	Small nucleolar RNA SNORA30/SNORA37 family [Source:RFAM;Acc:RF00415]
ENSCJAG00000033906	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	71566407	71566510	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030127	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	15163641	15163750	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023828	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	5314524	5314630	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026644	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1642703	1642806	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036426	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	9555646	9555928	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024757	NOVEL	miRNA	ENSCJAG00000024757	chromosome:C_jacchus3.2.1:10:1:132174527:1	126790041	126790154	D	<no descrition>
ENSCJAG00000024682	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	114354373	114354474	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028606	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	107927302	107927409	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034980	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	64559313	64559417	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037262	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	37396492	37396788	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027162	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:9:1:124281992:1	113354067	113354182	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000024714	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	104592774	104592879	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034506	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:2:1:204313951:1	174250112	174250244	R	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000025444	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	46644170	46644276	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037079	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	11026191	11026487	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026256	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	32294778	32294879	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035883	NOVEL	snoRNA	SNORD53_SNORD92	chromosome:C_jacchus3.2.1:14:1:108792865:1	79493462	79493539	R	Small nucleolar RNA SNORD53/SNORD92 [Source:RFAM;Acc:RF00325]
ENSCJAG00000031539	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	112250476	112250594	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032258	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	75308092	75308150	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035250	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	18560615	18560715	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030876	NOVEL	miRNA	ENSCJAG00000030876	chromosome:C_jacchus3.2.1:1:1:210400635:1	48083662	48083749	R	<no descrition>
ENSCJAG00000035666	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	31539619	31539913	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035559	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	149525455	149525554	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025833	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	76905739	76905841	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029371	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	44411152	44411271	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031418	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	74837424	74837521	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037785	NOVEL	miRNA	ENSCJAG00000037785	chromosome:C_jacchus3.2.1:22:1:49145316:1	39147237	39147337	R	<no descrition>
ENSCJAG00000035683	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	76901696	76901991	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035094	NOVEL	snoRNA	SNORA81	chromosome:C_jacchus3.2.1:13:1:117903854:1	58901399	58901571	R	Small nucleolar RNA SNORA81 [Source:RFAM;Acc:RF01241]
ENSCJAG00000034958	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	33740792	33740904	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032981	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	54876197	54876307	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031512	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	83296678	83296784	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026372	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	14442456	14442595	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037580	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	111771764	111771826	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029702	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	55913193	55913287	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037722	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	115245561	115245855	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025812	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92015076	92015177	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035057	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	99931474	99931576	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029546	NOVEL	snoRNA	SNORD57	chromosome:C_jacchus3.2.1:5:1:159171411:1	8446570	8446642	D	Small nucleolar RNA SNORD57 [Source:RFAM;Acc:RF00274]
ENSCJAG00000030949	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	75446948	75447050	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032601	NOVEL	snoRNA	SNORA4	chromosome:C_jacchus3.2.1:X:1:142054208:1	73244581	73244706	D	Small nucleolar RNA SNORA4 [Source:RFAM;Acc:RF00394]
ENSCJAG00000025258	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:22:1:49145316:1	46738849	46739039	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000025022	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	33432930	33433070	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025286	NOVEL	miRNA	ENSCJAG00000025286	chromosome:C_jacchus3.2.1:13:1:117903854:1	27162813	27162912	D	<no descrition>
ENSCJAG00000030556	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	18542046	18542144	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033963	NOVEL	miRNA	ENSCJAG00000033963	chromosome:C_jacchus3.2.1:17:1:74750902:1	48064140	48064214	R	<no descrition>
ENSCJAG00000025243	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:10:1:132174527:1	81885679	81885806	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000031413	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	117863461	117863571	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024408	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	117126625	117126725	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029808	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:7:1:155834243:1	60655504	60655600	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000030394	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	2127115	2127221	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027931	NOVEL	miRNA	ENSCJAG00000027931	chromosome:C_jacchus3.2.1:10:1:132174527:1	32642828	32642922	R	<no descrition>
ENSCJAG00000031561	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:3:1:190850796:1	6315816	6315876	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026882	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	145451072	145451211	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037150	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	4452886	4453182	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027968	NOVEL	miRNA	ENSCJAG00000027968	chromosome:C_jacchus3.2.1:3:1:190850796:1	83787941	83788054	D	<no descrition>
ENSCJAG00000027892	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	117516955	117517058	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033539	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:15:1:98464013:1	28800107	28800241	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000035872	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	121444815	121445110	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024574	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1334292	1334373	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000025453	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:22:1:49145316:1	8168237	8168567	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030239	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	203124541	203124646	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030079	NOVEL	miRNA	ENSCJAG00000030079	chromosome:C_jacchus3.2.1:8:1:128169293:1	38013075	38013164	D	<no descrition>
ENSCJAG00000030327	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	184682194	184682297	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035889	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	99676648	99676944	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037559	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	34333743	34334036	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028789	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	11843133	11843246	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026763	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	66705763	66705869	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036718	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	22839147	22839443	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035858	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288669.1:1:12570:1	7133	7239	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029434	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:11:1:130397257:1	10480632	10480700	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000025354	NOVEL	miRNA	ENSCJAG00000025354	chromosome:C_jacchus3.2.1:1:1:210400635:1	169017112	169017188	D	<no descrition>
ENSCJAG00000026953	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1269153	1269234	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000025385	NOVEL	miRNA	ENSCJAG00000025385	chromosome:C_jacchus3.2.1:22:1:49145316:1	44882801	44882884	D	<no descrition>
ENSCJAG00000031364	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	31712245	31712386	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034096	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	71261822	71261921	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037112	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	148955293	148955588	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032636	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	185486330	185486447	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035710	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	39943389	39943684	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038087	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL286247.1:1:101330:1	76260	76423	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033797	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	34916675	34916766	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024684	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	46303882	46303987	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027308	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	105917917	105918035	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034594	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	37417438	37417542	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037368	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	263380	263486	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030512	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	35750588	35750683	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026950	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	53594717	53594879	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027148	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	37571643	37571744	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035626	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	40281319	40281613	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024014	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	1677030	1677136	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028944	NOVEL	miRNA	ENSCJAG00000028944	chromosome:C_jacchus3.2.1:11:1:130397257:1	113496396	113496484	D	<no descrition>
ENSCJAG00000029734	NOVEL	miRNA	ENSCJAG00000029734	chromosome:C_jacchus3.2.1:5:1:159171411:1	116186954	116187048	R	<no descrition>
ENSCJAG00000031768	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	82648392	82648489	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028712	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	174847307	174847389	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026316	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	153348412	153348531	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025327	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	77769839	77769951	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025747	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	112848392	112848490	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029116	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	88543618	88543758	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035152	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	125392619	125392746	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029170	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	20229536	20229646	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030391	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	43882632	43882740	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032509	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:19:1:49578535:1	43270834	43271115	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024337	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:5:1:159171411:1	10887991	10888113	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000036729	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	90681671	90681967	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027790	NOVEL	miRNA	ENSCJAG00000027790	chromosome:C_jacchus3.2.1:10:1:132174527:1	126985531	126985608	D	<no descrition>
ENSCJAG00000024488	NOVEL	snoRNA	SNORD87	chromosome:C_jacchus3.2.1:16:1:96796970:1	19256433	19256525	R	Small nucleolar RNA SNORD87 [Source:RFAM;Acc:RF00439]
ENSCJAG00000028591	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	55680204	55680310	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030349	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	83796503	83796609	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032773	NOVEL	snoRNA	SCARNA16	chromosome:C_jacchus3.2.1:11:1:130397257:1	76462738	76462909	R	Small Cajal body specific RNA 16 [Source:RFAM;Acc:RF00424]
ENSCJAG00000028692	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	84489929	84490038	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026731	NOVEL	miRNA	ENSCJAG00000026731	chromosome:C_jacchus3.2.1:4:1:171630274:1	62274173	62274265	R	<no descrition>
ENSCJAG00000026520	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	1206590	1206691	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024104	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	23282025	23282143	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028438	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	73832641	73832759	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034007	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	4686388	4686494	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026835	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	112047028	112047131	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030590	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	196131272	196131432	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026424	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:7:1:155834243:1	70779802	70779930	R	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000025790	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	4033513	4033675	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033834	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	6153814	6153916	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029045	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	76564234	76564340	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036332	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	84209293	84209587	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031436	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:3:1:190850796:1	18814696	18814826	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000028943	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:6:1:158406734:1	60139726	60139917	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037390	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	136171219	136171515	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028183	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	53099065	53099171	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034639	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	81669082	81669188	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037737	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	67690331	67690618	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032452	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	116512067	116512174	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034986	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:16:1:96796970:1	77503559	77503687	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000032838	NOVEL	snoRNA	SNORD67	chromosome:C_jacchus3.2.1:11:1:130397257:1	110032794	110032899	R	Small nucleolar RNA SNORD67 [Source:RFAM;Acc:RF00573]
ENSCJAG00000028586	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	56304277	56304395	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027140	NOVEL	snoRNA	SNORA14	chromosome:C_jacchus3.2.1:19:1:49578535:1	45126751	45126886	D	Small nucleolar RNA SNORA14 [Source:RFAM;Acc:RF00397]
ENSCJAG00000037193	NOVEL	miRNA	ENSCJAG00000037193	chromosome:C_jacchus3.2.1:11:1:130397257:1	99977655	99977742	R	<no descrition>
ENSCJAG00000024057	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	70230856	70230964	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029818	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	145267029	145267135	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026946	NOVEL	miRNA	ENSCJAG00000026946	chromosome:C_jacchus3.2.1:4:1:171630274:1	15093553	15093644	D	<no descrition>
ENSCJAG00000026671	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	4866781	4866873	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030816	NOVEL	miRNA	ENSCJAG00000030816	chromosome:C_jacchus3.2.1:7:1:155834243:1	123029253	123029403	D	<no descrition>
ENSCJAG00000027573	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	49885136	49885254	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030498	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	36641271	36641383	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024582	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	92262200	92262301	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033668	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	35897677	35897751	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035841	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	434994	435091	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036056	NOVEL	miRNA	ENSCJAG00000036056	chromosome:C_jacchus3.2.1:13:1:117903854:1	21782877	21782981	D	<no descrition>
ENSCJAG00000037677	NOVEL	miRNA	ENSCJAG00000037677	chromosome:C_jacchus3.2.1:22:1:49145316:1	14362379	14362464	D	<no descrition>
ENSCJAG00000037264	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	128918723	128919019	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025742	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	69396499	69396605	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028809	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	28735277	28735389	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029505	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	114841549	114841689	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031945	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	22498845	22498946	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030993	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	36042097	36042200	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037376	NOVEL	miRNA	ENSCJAG00000037376	chromosome:C_jacchus3.2.1:13:1:117903854:1	105593182	105593268	D	<no descrition>
ENSCJAG00000037866	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	194383611	194383907	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027933	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:3:1:190850796:1	189783562	189783697	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000034290	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	66990069	66990165	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034168	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:20:1:44557958:1	3833605	3833691	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000027029	NOVEL	snoRNA	SNORA8	chromosome:C_jacchus3.2.1:X:1:142054208:1	121023048	121023186	D	Small nucleolar RNA SNORA8 [Source:RFAM;Acc:RF00393]
ENSCJAG00000030181	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	40311836	40311937	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032426	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	33136289	33136441	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037538	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	34404125	34404421	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037322	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	89286025	89286321	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034103	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	68262987	68263093	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033352	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	48872076	48872146	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000035721	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	120388590	120388885	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029868	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	73801355	73801447	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027761	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	67979228	67979334	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028589	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:15:1:98464013:1	48960346	48960509	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032233	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	64459063	64459164	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030393	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	66209745	66209853	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026853	NOVEL	miRNA	ENSCJAG00000026853	chromosome:C_jacchus3.2.1:2:1:204313951:1	12152675	12152765	R	<no descrition>
ENSCJAG00000035619	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	216153	216259	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032130	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	26159487	26159587	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024363	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	110151993	110152094	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034869	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	158311811	158311906	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029297	NOVEL	miRNA	ENSCJAG00000029297	chromosome:C_jacchus3.2.1:19:1:49578535:1	20359345	20359454	R	<no descrition>
ENSCJAG00000027980	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	80966975	80967080	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036112	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	5358455	5358756	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030706	NOVEL	miRNA	ENSCJAG00000030706	chromosome:C_jacchus3.2.1:15:1:98464013:1	27523543	27523630	R	<no descrition>
ENSCJAG00000024180	NOVEL	snoRNA	SNORA41	chromosome:C_jacchus3.2.1:10:1:132174527:1	22517361	22517487	D	Small nucleolar RNA SNORA41 [Source:RFAM;Acc:RF00403]
ENSCJAG00000027818	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	45986195	45986298	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037350	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	122826699	122826994	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034534	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	14536826	14536929	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030001	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1101433	1101527	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000030641	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	9299524	9299652	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026941	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	43393520	43393625	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035672	NOVEL	miRNA	ENSCJAG00000035672	chromosome:C_jacchus3.2.1:5:1:159171411:1	95265709	95265775	R	<no descrition>
ENSCJAG00000029327	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1105037	1105131	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000035062	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:3:1:190850796:1	122030898	122030968	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000032064	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	101142680	101142798	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027522	NOVEL	snoRNA	SNORD58	chromosome:C_jacchus3.2.1:10:1:132174527:1	69660680	69660745	D	Small nucleolar RNA SNORD58 [Source:RFAM;Acc:RF00151]
ENSCJAG00000035933	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285787.1:1:43974:1	30363	30490	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028766	NOVEL	miRNA	ENSCJAG00000028766	chromosome:C_jacchus3.2.1:3:1:190850796:1	119682830	119682911	R	<no descrition>
ENSCJAG00000028888	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	22678865	22678971	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025450	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	97416795	97416896	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027698	NOVEL	miRNA	ENSCJAG00000027698	chromosome:C_jacchus3.2.1:6:1:158406734:1	11045332	11045378	R	<no descrition>
ENSCJAG00000025773	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	108594675	108594778	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030936	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	167449458	167449562	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025065	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	69693850	69693968	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035968	NOVEL	miRNA	ENSCJAG00000035968	chromosome:C_jacchus3.2.1:6:1:158406734:1	106581214	106581298	R	<no descrition>
ENSCJAG00000026006	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	81799942	81800060	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029193	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	4744210	4744327	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030778	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:15:1:98464013:1	68282288	68282451	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030060	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	39933839	39933956	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024460	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	38362662	38362771	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036287	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286791.1:1:13549:1	8861	8979	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024880	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	106937965	106938104	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025491	NOVEL	miRNA	ENSCJAG00000025491	chromosome:C_jacchus3.2.1:10:1:132174527:1	126774446	126774534	D	<no descrition>
ENSCJAG00000037134	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	98331338	98331648	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026560	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	92760469	92760617	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000032102	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	192876823	192876930	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026767	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	202767282	202767422	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025158	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	8664614	8664724	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036978	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	44896141	44896438	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036840	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	38358401	38358697	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029137	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1151171	1151261	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000037817	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	31741753	31741859	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028335	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	139760769	139761063	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029984	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	1435308	1435448	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024737	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1303511	1303590	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000023740	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	45200258	45200365	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027842	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:18:1:47448759:1	45234431	45234590	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023659	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	110654119	110654221	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037686	NOVEL	miRNA	ENSCJAG00000037686	chromosome:C_jacchus3.2.1:5:1:159171411:1	50829428	50829507	D	<no descrition>
ENSCJAG00000033136	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	174102759	174102820	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026377	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	203222889	203222995	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030582	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	72137509	72137609	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034359	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	12413734	12413833	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025210	NOVEL	miRNA	ENSCJAG00000025210	chromosome:C_jacchus3.2.1:9:1:124281992:1	101993266	101993375	R	<no descrition>
ENSCJAG00000028238	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	126838357	126838651	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027948	NOVEL	misc_RNA	CPEB3_ribozyme	chromosome:C_jacchus3.2.1:12:1:121768101:1	79069755	79069831	R	Mammalian CPEB3 ribozyme [Source:RFAM;Acc:RF00622]
ENSCJAG00000026019	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	140791383	140791486	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025869	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	11470425	11470574	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030646	NOVEL	miRNA	ENSCJAG00000030646	chromosome:C_jacchus3.2.1:2:1:204313951:1	32679148	32679244	D	<no descrition>
ENSCJAG00000028216	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	149228910	149229016	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025683	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	93953305	93953407	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037408	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	8578110	8578404	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024556	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	8074614	8074721	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024070	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:3:1:190850796:1	13496271	13496400	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000027337	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	95530183	95530289	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037423	NOVEL	miRNA	ENSCJAG00000037423	chromosome:C_jacchus3.2.1:12:1:121768101:1	3249247	3249322	D	<no descrition>
ENSCJAG00000037227	NOVEL	snoRNA	SNORD43	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	10619	10683	R	Small nucleolar RNA SNORD43 [Source:RFAM;Acc:RF00221]
ENSCJAG00000036489	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285881.1:1:21559:1	855	961	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031873	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	26994578	26994877	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000038118	NOVEL	miRNA	ENSCJAG00000038118	chromosome:C_jacchus3.2.1:18:1:47448759:1	37959542	37959639	R	<no descrition>
ENSCJAG00000026115	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	23436823	23436922	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033490	NOVEL	miRNA	ENSCJAG00000033490	chromosome:C_jacchus3.2.1:7:1:155834243:1	73835175	73835255	D	<no descrition>
ENSCJAG00000023614	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	47056142	47056261	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032748	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	91698121	91698227	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032033	NOVEL	miRNA	ENSCJAG00000032033	chromosome:C_jacchus3.2.1:10:1:132174527:1	112805115	112805234	R	<no descrition>
ENSCJAG00000026136	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:9:1:124281992:1	40812034	40812168	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000030984	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	26132799	26132914	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030298	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	130856592	130856710	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031266	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	4498676	4498770	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023754	NOVEL	miRNA	ENSCJAG00000023754	chromosome:C_jacchus3.2.1:15:1:98464013:1	28012970	28013057	R	<no descrition>
ENSCJAG00000030115	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:1:1:210400635:1	22390471	22390605	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000037345	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	21721378	21721662	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023953	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1117591	1117684	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000033363	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	69251100	69251192	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030322	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	126078064	126078359	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030199	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	11935919	11936039	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035977	NOVEL	miRNA	ENSCJAG00000035977	chromosome:C_jacchus3.2.1:7:1:155834243:1	60388673	60388750	R	<no descrition>
ENSCJAG00000028923	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	101511702	101512030	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028947	NOVEL	snoRNA	SNORA71	chromosome:C_jacchus3.2.1:2:1:204313951:1	89357224	89357357	D	Small nucleolar RNA SNORA71 [Source:RFAM;Acc:RF00056]
ENSCJAG00000024386	NOVEL	miRNA	ENSCJAG00000024386	chromosome:C_jacchus3.2.1:2:1:204313951:1	130283436	130283554	D	<no descrition>
ENSCJAG00000026621	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	60464287	60464410	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030232	NOVEL	miRNA	ENSCJAG00000030232	chromosome:C_jacchus3.2.1:8:1:128169293:1	115411963	115412048	D	<no descrition>
ENSCJAG00000031690	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	60693919	60694030	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000038045	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	134882958	134883254	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031386	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:13:1:117903854:1	40155616	40155686	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000034401	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	105815302	105815401	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027708	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	75057854	75057958	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031017	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	21559990	21560150	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023487	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	3611745	3611863	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034469	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	75059979	75060094	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032740	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:16:1:96796970:1	64688090	64688140	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035568	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	86165184	86165464	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035887	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	118333830	118334129	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029437	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	141609247	141609330	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036182	NOVEL	miRNA	ENSCJAG00000036182	chromosome:C_jacchus3.2.1:9:1:124281992:1	111256616	111256715	R	<no descrition>
ENSCJAG00000029791	NOVEL	snoRNA	SNORA81	chromosome:C_jacchus3.2.1:19:1:49578535:1	25458166	25458343	R	Small nucleolar RNA SNORA81 [Source:RFAM;Acc:RF01241]
ENSCJAG00000030149	NOVEL	miRNA	ENSCJAG00000030149	chromosome:C_jacchus3.2.1:8:1:128169293:1	7290706	7290773	R	<no descrition>
ENSCJAG00000030012	NOVEL	miRNA	ENSCJAG00000030012	chromosome:C_jacchus3.2.1:10:1:132174527:1	5177849	5177933	D	<no descrition>
ENSCJAG00000036282	NOVEL	miRNA	ENSCJAG00000036282	chromosome:C_jacchus3.2.1:4:1:171630274:1	133912031	133912152	R	<no descrition>
ENSCJAG00000036329	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	41613088	41613389	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026891	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	119871733	119871844	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037904	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	8200909	8201206	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029961	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	75657426	75657520	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035802	NOVEL	miRNA	ENSCJAG00000035802	chromosome:C_jacchus3.2.1:22:1:49145316:1	12559643	12559713	R	<no descrition>
ENSCJAG00000033439	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	51407279	51407381	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030938	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	105121027	105121332	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037879	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:12:1:121768101:1	7419614	7419726	R	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000036140	NOVEL	miRNA	ENSCJAG00000036140	chromosome:C_jacchus3.2.1:1:1:210400635:1	152953590	152953719	R	<no descrition>
ENSCJAG00000032050	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	46805656	46805760	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037302	NOVEL	miRNA	ENSCJAG00000037302	chromosome:C_jacchus3.2.1:4:1:171630274:1	22806477	22806564	R	<no descrition>
ENSCJAG00000024850	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:15:1:98464013:1	83100383	83100498	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036037	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	105940018	105940313	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026579	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	131634219	131634314	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023473	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	85846219	85846359	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023965	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:5:1:159171411:1	96067652	96067786	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000036073	NOVEL	miRNA	ENSCJAG00000036073	chromosome:C_jacchus3.2.1:21:1:50472720:1	37686324	37686380	R	<no descrition>
ENSCJAG00000025098	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	203130553	203130693	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034778	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	135893569	135893677	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034235	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	12407134	12407230	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025411	NOVEL	miRNA	ENSCJAG00000025411	chromosome:C_jacchus3.2.1:7:1:155834243:1	35685956	35686036	D	<no descrition>
ENSCJAG00000027492	NOVEL	miRNA	ENSCJAG00000027492	chromosome:C_jacchus3.2.1:11:1:130397257:1	35610199	35610345	R	<no descrition>
ENSCJAG00000032923	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	31576316	31576415	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033479	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	98952612	98952718	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029956	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	36614473	36614585	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024959	NOVEL	miRNA	ENSCJAG00000024959	chromosome:C_jacchus3.2.1:9:1:124281992:1	68605172	68605263	R	<no descrition>
ENSCJAG00000026895	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	95118753	95118848	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035987	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	110496873	110497168	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031801	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	33481190	33481291	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036623	NOVEL	miRNA	ENSCJAG00000036623	chromosome:C_jacchus3.2.1:12:1:121768101:1	94800454	94800535	D	<no descrition>
ENSCJAG00000036940	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	180882447	180882741	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035461	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	20389764	20389888	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026236	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	52534856	52535018	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031887	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	20518376	20518483	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036799	NOVEL	miRNA	ENSCJAG00000036799	scaffold:C_jacchus3.2.1:GL284750.1:1:15335:1	12663	12750	R	<no descrition>
ENSCJAG00000024499	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:6:1:158406734:1	18155479	18155612	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000033702	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:22:1:49145316:1	41867129	41867346	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000034378	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	29800060	29800205	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025621	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	107043754	107043872	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033079	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	43295653	43295741	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023842	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	28150897	28151025	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028541	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:7:1:155834243:1	86256110	86256182	D	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000036068	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	65621179	65621475	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027681	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	124594799	124594939	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036312	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	67671700	67671990	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024318	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:15:1:98464013:1	12299843	12300145	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024985	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	35034141	35034330	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000023637	NOVEL	snoRNA	SNORD21	chromosome:C_jacchus3.2.1:7:1:155834243:1	129300177	129300271	D	Small nucleolar RNA SNORD21 [Source:RFAM;Acc:RF00068]
ENSCJAG00000036405	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	67886077	67886373	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033341	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	104890851	104890952	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038143	NOVEL	snoRNA	SNORA25	scaffold:C_jacchus3.2.1:GL286016.1:1:25064:1	10656	10745	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000026146	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	131198496	131198815	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031162	NOVEL	miRNA	ENSCJAG00000031162	chromosome:C_jacchus3.2.1:18:1:47448759:1	7501877	7501967	D	<no descrition>
ENSCJAG00000025590	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	61843054	61843165	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037617	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	197842663	197842946	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035238	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	21207469	21207570	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037050	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	43296815	43297116	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025514	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	27241228	27241332	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027750	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:8:1:128169293:1	101929256	101929354	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000024208	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	70549272	70549400	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036728	NOVEL	miRNA	ENSCJAG00000036728	chromosome:C_jacchus3.2.1:4:1:171630274:1	161025320	161025416	R	<no descrition>
ENSCJAG00000037201	NOVEL	miRNA	ENSCJAG00000037201	chromosome:C_jacchus3.2.1:10:1:132174527:1	87783769	87783869	D	<no descrition>
ENSCJAG00000026719	NOVEL	miRNA	ENSCJAG00000026719	chromosome:C_jacchus3.2.1:5:1:159171411:1	93956191	93956299	R	<no descrition>
ENSCJAG00000030144	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:16:1:96796970:1	42348233	42348358	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000025759	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	10661872	10661982	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025421	NOVEL	miRNA	ENSCJAG00000025421	chromosome:C_jacchus3.2.1:X:1:142054208:1	51362475	51362593	R	<no descrition>
ENSCJAG00000024713	NOVEL	miRNA	ENSCJAG00000024713	chromosome:C_jacchus3.2.1:20:1:44557958:1	10827065	10827148	D	<no descrition>
ENSCJAG00000027033	NOVEL	snoRNA	SNORA19	chromosome:C_jacchus3.2.1:19:1:49578535:1	28366666	28366795	R	Small nucleolar RNA SNORA19 [Source:RFAM;Acc:RF00413]
ENSCJAG00000037226	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	14543881	14544177	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029274	NOVEL	snoRNA	SNORA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	138037687	138037817	R	Small nucleolar RNA SNORA3/SNORA45 family [Source:RFAM;Acc:RF00334]
ENSCJAG00000036603	NOVEL	miRNA	ENSCJAG00000036603	chromosome:C_jacchus3.2.1:2:1:204313951:1	88485935	88486016	R	<no descrition>
ENSCJAG00000035808	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	39153218	39153514	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035884	NOVEL	miRNA	ENSCJAG00000035884	chromosome:C_jacchus3.2.1:11:1:130397257:1	45555696	45555778	R	<no descrition>
ENSCJAG00000026522	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126856534	126856610	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000036297	NOVEL	miRNA	ENSCJAG00000036297	chromosome:C_jacchus3.2.1:X:1:142054208:1	111354160	111354250	D	<no descrition>
ENSCJAG00000026779	NOVEL	miRNA	ENSCJAG00000026779	chromosome:C_jacchus3.2.1:X:1:142054208:1	134405089	134405217	R	<no descrition>
ENSCJAG00000025703	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	67026072	67026177	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026109	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	86503759	86503865	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030229	NOVEL	miRNA	ENSCJAG00000030229	chromosome:C_jacchus3.2.1:9:1:124281992:1	52615969	52616064	D	<no descrition>
ENSCJAG00000036218	NOVEL	miRNA	ENSCJAG00000036218	chromosome:C_jacchus3.2.1:6:1:158406734:1	150882388	150882479	R	<no descrition>
ENSCJAG00000034818	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	35871359	35871499	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025975	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	32259386	32259497	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025148	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	141110498	141110606	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028914	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:10:1:132174527:1	11894421	11894624	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000031124	NOVEL	snoRNA	SCARNA11	chromosome:C_jacchus3.2.1:11:1:130397257:1	14844405	14844562	D	Small Cajal body specific RNA 11 [Source:RFAM;Acc:RF00564]
ENSCJAG00000024193	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1294126	1294207	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000027539	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	65688358	65688464	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025481	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	201249257	201249358	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033344	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	4022571	4022682	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036581	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288646.1:1:14237:1	13878	13979	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025625	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	133618386	133618492	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025196	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	190924612	190924775	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033019	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	97401005	97401117	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036555	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	44204912	44205188	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028367	NOVEL	snoRNA	SNORD60	chromosome:C_jacchus3.2.1:12:1:121768101:1	114763402	114763475	R	Small nucleolar RNA SNORD60 [Source:RFAM;Acc:RF00271]
ENSCJAG00000037766	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	37614488	37614784	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029087	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	46380106	46380197	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036324	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	72410271	72410568	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025273	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	124266447	124266553	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024638	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	135742541	135742652	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028008	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	96803480	96803605	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033645	NOVEL	miRNA	ENSCJAG00000033645	chromosome:C_jacchus3.2.1:1:1:210400635:1	192164927	192165015	R	<no descrition>
ENSCJAG00000036264	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	98994988	98995283	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035470	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	39501443	39501544	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038082	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	110128091	110128387	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033606	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:11:1:130397257:1	110826597	110826727	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000036124	NOVEL	miRNA	ENSCJAG00000036124	chromosome:C_jacchus3.2.1:9:1:124281992:1	71345029	71345145	R	<no descrition>
ENSCJAG00000025170	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	142410284	142410627	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036013	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286277.1:1:51577:1	33899	34000	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035242	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	104734074	104734175	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036800	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	4421789	4422084	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026827	NOVEL	miRNA	ENSCJAG00000026827	chromosome:C_jacchus3.2.1:8:1:128169293:1	116491745	116491848	D	<no descrition>
ENSCJAG00000034799	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	575689	575788	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030141	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	89058065	89058167	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023657	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	65294315	65294597	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033674	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:12:1:121768101:1	73933456	73933516	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000027724	NOVEL	miRNA	ENSCJAG00000027724	chromosome:C_jacchus3.2.1:22:1:49145316:1	44908618	44908718	D	<no descrition>
ENSCJAG00000036645	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286258.1:1:57639:1	38079	38178	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026765	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	69389894	69389998	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030230	NOVEL	snoRNA	SNORA77	chromosome:C_jacchus3.2.1:10:1:132174527:1	11777243	11777322	R	Small nucleolar RNA SNORA77 [Source:RFAM;Acc:RF00599]
ENSCJAG00000026354	NOVEL	snoRNA	SNORD98	chromosome:C_jacchus3.2.1:12:1:121768101:1	55507532	55507598	R	Small nucleolar RNA SNORD98 [Source:RFAM;Acc:RF00607]
ENSCJAG00000037151	NOVEL	snoRNA	U3	scaffold:C_jacchus3.2.1:GL285445.1:1:37644:1	17096	17312	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000028084	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	53825430	53825535	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029134	NOVEL	miRNA	ENSCJAG00000029134	chromosome:C_jacchus3.2.1:X:1:142054208:1	134436069	134436162	R	<no descrition>
ENSCJAG00000031676	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88701420	88701528	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036608	NOVEL	miRNA	ENSCJAG00000036608	chromosome:C_jacchus3.2.1:10:1:132174527:1	60726531	60726616	R	<no descrition>
ENSCJAG00000035739	NOVEL	miRNA	ENSCJAG00000035739	scaffold:C_jacchus3.2.1:GL286836.1:1:8239:1	3092	3161	D	<no descrition>
ENSCJAG00000028868	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:20:1:44557958:1	41739758	41740118	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030086	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:10:1:132174527:1	90076186	90076376	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000026960	NOVEL	miRNA	ENSCJAG00000026960	chromosome:C_jacchus3.2.1:9:1:124281992:1	69171309	69171381	D	<no descrition>
ENSCJAG00000037721	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	21755994	21756290	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037434	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	36173280	36173575	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029246	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:5:1:159171411:1	92996901	92997026	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000035818	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	10307885	10308178	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025077	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	12637719	12637803	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031028	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	111667217	111667357	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025246	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	194788420	194788522	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027467	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	53240441	53240546	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025550	NOVEL	snoRNA	SNORA61	chromosome:C_jacchus3.2.1:7:1:155834243:1	62773279	62773408	R	Small nucleolar RNA SNORA61 [Source:RFAM;Acc:RF00420]
ENSCJAG00000025779	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	165809741	165809847	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029856	NOVEL	snoRNA	SNORA71	chromosome:C_jacchus3.2.1:5:1:159171411:1	32455192	32455325	R	Small nucleolar RNA SNORA71 [Source:RFAM;Acc:RF00056]
ENSCJAG00000035922	NOVEL	miRNA	ENSCJAG00000035922	chromosome:C_jacchus3.2.1:5:1:159171411:1	34372200	34372286	R	<no descrition>
ENSCJAG00000034926	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	106604451	106604553	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027600	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	23176600	23176910	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035003	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	90198274	90198376	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035747	NOVEL	miRNA	ENSCJAG00000035747	chromosome:C_jacchus3.2.1:2:1:204313951:1	73929290	73929371	D	<no descrition>
ENSCJAG00000026569	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	125034510	125034628	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026730	NOVEL	miRNA	ENSCJAG00000026730	chromosome:C_jacchus3.2.1:5:1:159171411:1	33302179	33302250	D	<no descrition>
ENSCJAG00000024481	NOVEL	miRNA	ENSCJAG00000024481	chromosome:C_jacchus3.2.1:5:1:159171411:1	8246988	8247059	D	<no descrition>
ENSCJAG00000036661	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	5706194	5706291	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035844	NOVEL	miRNA	ENSCJAG00000035844	chromosome:C_jacchus3.2.1:1:1:210400635:1	171715212	171715301	D	<no descrition>
ENSCJAG00000037897	NOVEL	snoRNA	snoMBII-202	scaffold:C_jacchus3.2.1:GL285849.1:1:83312:1	78392	78475	D	Small nucleolar RNA MBII-202 [Source:RFAM;Acc:RF00324]
ENSCJAG00000034726	NOVEL	misc_RNA	RNase_MRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	73928532	73928664	R	RNase MRP [Source:RFAM;Acc:RF00030]
ENSCJAG00000033543	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	4575484	4575590	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037872	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	37491170	37491476	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027149	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	73339932	73340030	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026909	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:8:1:128169293:1	30451222	30451447	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037924	NOVEL	snRNA	U2	scaffold:C_jacchus3.2.1:GL285436.1:1:83585:1	56541	56727	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000032006	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	51137277	51137389	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027841	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:21:1:50472720:1	43588466	43588599	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000033626	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	102866583	102866709	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000026371	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	6897630	6897770	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023491	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	154391709	154391810	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030948	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	46282174	46282290	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030464	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	50954509	50954623	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037167	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	49403656	49403952	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031330	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	56453942	56454042	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035030	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	54065460	54065562	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027448	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	20143875	20143985	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027881	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	36438281	36438388	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033862	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	135973789	135973889	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029757	NOVEL	snoRNA	SCARNA24	chromosome:C_jacchus3.2.1:7:1:155834243:1	62894750	62894877	D	Small Cajal body specific RNA 24 [Source:RFAM;Acc:RF00422]
ENSCJAG00000031466	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	164810920	164811113	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000036434	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	9550139	9550435	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032745	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	43866412	43866514	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029372	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	39131884	39131979	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029718	NOVEL	miRNA	ENSCJAG00000029718	chromosome:C_jacchus3.2.1:7:1:155834243:1	145498148	145498222	D	<no descrition>
ENSCJAG00000035744	NOVEL	miRNA	ENSCJAG00000035744	chromosome:C_jacchus3.2.1:5:1:159171411:1	149151517	149151602	D	<no descrition>
ENSCJAG00000025175	NOVEL	snoRNA	SCARNA24	chromosome:C_jacchus3.2.1:X:1:142054208:1	23368427	23368556	D	Small Cajal body specific RNA 24 [Source:RFAM;Acc:RF00422]
ENSCJAG00000037988	NOVEL	miRNA	ENSCJAG00000037988	chromosome:C_jacchus3.2.1:6:1:158406734:1	45207207	45207286	D	<no descrition>
ENSCJAG00000027210	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	95861646	95861747	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025147	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	74322157	74322258	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024802	NOVEL	snoRNA	SNORD58	chromosome:C_jacchus3.2.1:13:1:117903854:1	87409715	87409780	R	Small nucleolar RNA SNORD58 [Source:RFAM;Acc:RF00151]
ENSCJAG00000028792	NOVEL	miRNA	ENSCJAG00000028792	chromosome:C_jacchus3.2.1:10:1:132174527:1	13926721	13926819	D	<no descrition>
ENSCJAG00000034274	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	22536797	22536901	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034705	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	143335430	143335530	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038063	NOVEL	miRNA	ENSCJAG00000038063	chromosome:C_jacchus3.2.1:5:1:159171411:1	42580990	42581078	R	<no descrition>
ENSCJAG00000026552	NOVEL	snoRNA	SNORA38	chromosome:C_jacchus3.2.1:5:1:159171411:1	158266882	158267013	D	Small nucleolar RNA SNORA38 [Source:RFAM;Acc:RF00428]
ENSCJAG00000033710	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	16989684	16989796	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030313	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	112200305	112200414	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030644	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	14522356	14522462	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024615	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	63221841	63221947	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037223	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285298.1:1:36172:1	12877	13021	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027964	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	32636497	32636606	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024276	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	46264016	46264122	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038152	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	124411681	124411977	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025293	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	156332211	156332317	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028633	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	157013958	157014308	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035690	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	172538214	172538510	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028228	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1251192	1251272	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000025928	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	70830681	70830784	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036201	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	38438557	38438864	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029237	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	19610208	19610306	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037744	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	82875971	82876270	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036090	NOVEL	miRNA	ENSCJAG00000036090	chromosome:C_jacchus3.2.1:13:1:117903854:1	27857198	27857273	R	<no descrition>
ENSCJAG00000029762	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:8:1:128169293:1	94109684	94109805	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000033684	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	34937000	34937107	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029526	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	13648823	13648964	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024375	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	61331951	61332069	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032410	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	124435298	124435401	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023786	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:X:1:142054208:1	98866048	98866187	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000027056	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:11:1:130397257:1	64458686	64458822	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000030606	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	22214260	22214377	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037295	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	99148181	99148477	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036711	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	68834379	68834483	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028524	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	65344293	65344391	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036445	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	120393541	120393834	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028706	NOVEL	miRNA	ENSCJAG00000028706	chromosome:C_jacchus3.2.1:9:1:124281992:1	51782075	51782159	D	<no descrition>
ENSCJAG00000034546	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	84970683	84970815	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029503	NOVEL	snoRNA	SNORD62	chromosome:C_jacchus3.2.1:1:1:210400635:1	175578302	175578387	D	Small nucleolar RNA SNORD62 [Source:RFAM;Acc:RF00153]
ENSCJAG00000034349	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	181251106	181251202	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036622	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	17473877	17474170	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037882	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	148848430	148848726	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029558	NOVEL	miRNA	ENSCJAG00000029558	chromosome:C_jacchus3.2.1:7:1:155834243:1	50619374	50619445	D	<no descrition>
ENSCJAG00000033108	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	54196492	54196604	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024149	NOVEL	snoRNA	SNORD90	chromosome:C_jacchus3.2.1:1:1:210400635:1	166669012	166669123	R	Small nucleolar RNA SNORD90 [Source:RFAM;Acc:RF00579]
ENSCJAG00000024895	NOVEL	snoRNA	SCARNA13	chromosome:C_jacchus3.2.1:10:1:132174527:1	121153184	121153458	R	Small Cajal body specific RNA 13 [Source:RFAM;Acc:RF00231]
ENSCJAG00000024746	NOVEL	snoRNA	SNORD65	chromosome:C_jacchus3.2.1:5:1:159171411:1	77741048	77741120	R	Small nucleolar RNA SNORD65 [Source:RFAM;Acc:RF00571]
ENSCJAG00000037993	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL288222.1:1:17857:1	16977	17116	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033783	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:1:1:210400635:1	177462883	177462949	D	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000028082	NOVEL	miRNA	ENSCJAG00000028082	chromosome:C_jacchus3.2.1:4:1:171630274:1	107964115	107964194	D	<no descrition>
ENSCJAG00000028962	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	46320952	46321091	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027354	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	172404415	172404555	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024675	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	34535401	34535503	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027201	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	77433039	77433143	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029335	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	82077588	82077689	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025134	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	72511041	72511156	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026093	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	93733129	93733223	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029840	NOVEL	miRNA	ENSCJAG00000029840	chromosome:C_jacchus3.2.1:22:1:49145316:1	10239026	10239105	R	<no descrition>
ENSCJAG00000037724	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	39416989	39417298	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035932	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	44701982	44702278	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027671	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	149522931	149523030	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036308	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	59344699	59344762	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027320	NOVEL	snoRNA	SNORD81	chromosome:C_jacchus3.2.1:8:1:128169293:1	108885493	108885568	R	Small nucleolar RNA SNORD81 [Source:RFAM;Acc:RF00136]
ENSCJAG00000031299	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:X:1:142054208:1	111674208	111674269	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030956	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	22116702	22116787	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030669	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	34719055	34719367	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025756	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:1:1:210400635:1	177370222	177370291	R	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000037092	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	79409884	79410189	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032767	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	24077694	24077805	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037693	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL285213.1:1:25509:1	19560	19662	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036989	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	47310054	47310349	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033873	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	100888413	100888522	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032706	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29543575	29543679	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035882	NOVEL	miRNA	ENSCJAG00000035882	chromosome:C_jacchus3.2.1:10:1:132174527:1	107879777	107879863	R	<no descrition>
ENSCJAG00000038001	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286635.1:1:16596:1	6834	6946	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034867	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	102552557	102552859	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031314	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	14410091	14410197	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029777	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	53550599	53550703	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027828	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	168924494	168924583	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000031653	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	80897148	80897254	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034333	NOVEL	miRNA	ENSCJAG00000034333	chromosome:C_jacchus3.2.1:6:1:158406734:1	123015519	123015605	R	<no descrition>
ENSCJAG00000034829	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	32261822	32261920	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035139	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	11826386	11826481	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034707	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:10:1:132174527:1	34287010	34287130	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000035407	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	134231144	134231249	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028213	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	36376516	36376619	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028377	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	35232085	35232180	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026596	NOVEL	snoRNA	SNORA16	chromosome:C_jacchus3.2.1:X:1:142054208:1	15212569	15212700	R	Small nucleolar RNA SNORA16B/SNORA16A family [Source:RFAM;Acc:RF00190]
ENSCJAG00000024730	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	48670591	48670693	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023654	NOVEL	miRNA	ENSCJAG00000023654	chromosome:C_jacchus3.2.1:8:1:128169293:1	127010250	127010379	D	<no descrition>
ENSCJAG00000036886	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL284779.1:1:16055:1	10219	10515	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036529	NOVEL	miRNA	ENSCJAG00000036529	chromosome:C_jacchus3.2.1:4:1:171630274:1	34517924	34518024	D	<no descrition>
ENSCJAG00000033343	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	49090942	49091070	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026978	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	32540436	32540566	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035320	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	3563680	3563742	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000031392	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	71338568	71338679	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034196	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	26507409	26507527	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025752	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:13:1:117903854:1	14338251	14338378	D	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000031155	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:22:1:49145316:1	35096744	35096813	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000030297	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	20190961	20191067	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026557	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	28816909	28817021	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031658	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:17:1:74750902:1	68024646	68024707	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000033135	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	83984325	83984436	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037064	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	18512241	18512537	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032143	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	6416251	6416370	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028707	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	39378745	39378885	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033965	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	5051680	5051786	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033391	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	21619039	21619142	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028619	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	38547759	38547923	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029878	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1164526	1164617	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000031099	NOVEL	snoRNA	SNORD67	chromosome:C_jacchus3.2.1:11:1:130397257:1	110036440	110036550	R	Small nucleolar RNA SNORD67 [Source:RFAM;Acc:RF00573]
ENSCJAG00000028747	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	58711361	58711477	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037734	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	8808247	8808541	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026231	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	53286656	53286761	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024106	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	63832543	63832642	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030247	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	43426997	43427103	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032020	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	105756353	105756461	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031095	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	1907516	1907619	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026805	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	121988866	121988969	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036980	NOVEL	miRNA	ENSCJAG00000036980	scaffold:C_jacchus3.2.1:GL285284.1:1:15609:1	3940	4035	R	<no descrition>
ENSCJAG00000024209	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	52040024	52040186	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027131	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	40086686	40086792	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036992	NOVEL	miRNA	ENSCJAG00000036992	chromosome:C_jacchus3.2.1:1:1:210400635:1	141266625	141266712	R	<no descrition>
ENSCJAG00000030991	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	2448129	2448269	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037534	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	13848307	13848602	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024894	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	135018466	135018567	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027491	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:11:1:130397257:1	44106933	44107062	D	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000036306	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL287821.1:1:70426:1	66749	67044	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029528	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	97324880	97324986	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030686	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	91357581	91357687	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036230	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	67601930	67602218	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025848	NOVEL	snoRNA	SNORD48	chromosome:C_jacchus3.2.1:4:1:171630274:1	32408508	32408570	D	Small nucleolar RNA SNORD48 [Source:RFAM;Acc:RF00282]
ENSCJAG00000030633	NOVEL	snoRNA	SNORA57	chromosome:C_jacchus3.2.1:2:1:204313951:1	35106334	35106482	D	Small nucleolar RNA SNORA57 [Source:RFAM;Acc:RF00191]
ENSCJAG00000038085	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285345.1:1:27409:1	14645	14746	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034276	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	6028704	6028774	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000037040	NOVEL	miRNA	ENSCJAG00000037040	chromosome:C_jacchus3.2.1:11:1:130397257:1	3427013	3427093	D	<no descrition>
ENSCJAG00000032466	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	3334271	3334376	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036266	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	221111	221217	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024438	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	25113584	25113690	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029165	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	105641145	105641248	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035753	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	22211517	22211813	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032072	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:1:1:210400635:1	22155026	22155093	R	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000026838	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	6955931	6956094	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037271	NOVEL	miRNA	ENSCJAG00000037271	chromosome:C_jacchus3.2.1:14:1:108792865:1	6528576	6528659	D	<no descrition>
ENSCJAG00000028107	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	153010074	153010168	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027267	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:7:1:155834243:1	34206878	34207012	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000038144	NOVEL	miRNA	ENSCJAG00000038144	chromosome:C_jacchus3.2.1:8:1:128169293:1	9204713	9204808	R	<no descrition>
ENSCJAG00000034093	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	42297817	42297917	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029363	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	22627744	22627845	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023957	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	99506609	99506711	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036964	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	56346508	56346801	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037168	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	63202015	63202311	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025078	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:X:1:142054208:1	27662511	27662578	D	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000023548	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	39639696	39639836	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034431	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	45832860	45832923	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036725	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL284842.1:1:159601:1	13072	13374	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037671	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	80910308	80910395	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030263	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	110749698	110749804	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027364	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	64804160	64804280	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028206	NOVEL	miRNA	ENSCJAG00000028206	chromosome:C_jacchus3.2.1:1:1:210400635:1	172335030	172335126	R	<no descrition>
ENSCJAG00000033673	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:9:1:124281992:1	21499814	21499873	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026027	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	677432	677530	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033052	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:4:1:171630274:1	80374653	80374781	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000027298	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	26160321	26160461	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029585	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	20998941	20999044	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030796	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	7795663	7795970	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023585	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	108584173	108584283	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029683	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	4701557	4701676	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029406	NOVEL	miRNA	ENSCJAG00000029406	chromosome:C_jacchus3.2.1:8:1:128169293:1	89063250	89063336	D	<no descrition>
ENSCJAG00000027077	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	55508138	55508244	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032570	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:X:1:142054208:1	37381511	37381572	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000023627	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	6331729	6332059	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037039	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	88534134	88534428	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027311	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:9:1:124281992:1	114519549	114519679	D	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000038080	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	68348438	68348733	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024333	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	107420071	107420177	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030340	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:15:1:98464013:1	87772808	87773019	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037197	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	64650143	64650438	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030028	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	117376944	117377081	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029261	NOVEL	miRNA	ENSCJAG00000029261	chromosome:C_jacchus3.2.1:2:1:204313951:1	111640859	111640921	R	<no descrition>
ENSCJAG00000028393	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:14:1:108792865:1	101107580	101107705	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000036665	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	107262194	107262487	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033795	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1178192	1178289	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000025040	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	130852706	130852809	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028036	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	78109487	78109616	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024984	NOVEL	miRNA	ENSCJAG00000024984	chromosome:C_jacchus3.2.1:2:1:204313951:1	204146454	204146540	R	<no descrition>
ENSCJAG00000030472	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	27442678	27442796	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024514	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	98704201	98704312	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036278	NOVEL	miRNA	ENSCJAG00000036278	chromosome:C_jacchus3.2.1:18:1:47448759:1	44287421	44287520	D	<no descrition>
ENSCJAG00000030054	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	122323714	122323985	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000006223	NOVEL	snoRNA	SNORA43	chromosome:C_jacchus3.2.1:12:1:121768101:1	27385540	27385657	D	Small nucleolar RNA SNORA43 [Source:RFAM;Acc:RF00416]
ENSCJAG00000037292	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	21157503	21157797	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037490	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	23693873	23694169	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033884	NOVEL	snoRNA	snoR442	chromosome:C_jacchus3.2.1:12:1:121768101:1	57813658	57813755	R	Small nucleolar RNA R442 [Source:RFAM;Acc:RF01232]
ENSCJAG00000037719	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	108236104	108236399	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029929	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	117439389	117439495	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029588	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	49056869	49056978	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027087	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	10921422	10921740	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035561	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	194208854	194209150	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035188	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	79721611	79721718	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031092	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:2:1:204313951:1	39633439	39633515	R	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000028494	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	175340398	175340509	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027821	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	79286014	79286120	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023925	NOVEL	miRNA	ENSCJAG00000023925	chromosome:C_jacchus3.2.1:3:1:190850796:1	82829365	82829429	D	<no descrition>
ENSCJAG00000035936	NOVEL	miRNA	ENSCJAG00000035936	chromosome:C_jacchus3.2.1:5:1:159171411:1	33173783	33173870	D	<no descrition>
ENSCJAG00000023540	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	11249829	11249932	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028074	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	128135240	128135345	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032552	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	101392970	101393068	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036663	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	198761288	198761583	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026910	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	110322023	110322163	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024457	NOVEL	miRNA	ENSCJAG00000024457	chromosome:C_jacchus3.2.1:12:1:121768101:1	14552851	14552927	R	<no descrition>
ENSCJAG00000035580	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	1146437	1146578	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033023	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	31222995	31223056	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030758	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	117168733	117168832	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029366	NOVEL	miRNA	ENSCJAG00000029366	chromosome:C_jacchus3.2.1:3:1:190850796:1	94791470	94791531	D	<no descrition>
ENSCJAG00000027121	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	1037084	1037367	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025525	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	37640291	37640456	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024448	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	6934893	6934988	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024164	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	10281330	10281436	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027110	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	69349360	69349478	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037267	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	147536896	147537192	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024269	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	99563124	99563264	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036480	NOVEL	miRNA	ENSCJAG00000036480	scaffold:C_jacchus3.2.1:GL284842.1:1:159601:1	107187	107238	D	<no descrition>
ENSCJAG00000025240	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	33320428	33320542	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024973	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	171388944	171389056	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024577	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	47795828	47795936	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025199	NOVEL	miRNA	ENSCJAG00000025199	chromosome:C_jacchus3.2.1:16:1:96796970:1	59866818	59866905	D	<no descrition>
ENSCJAG00000036493	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	162278	162573	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027854	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	97885264	97885365	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032758	NOVEL	miRNA	ENSCJAG00000032758	chromosome:C_jacchus3.2.1:5:1:159171411:1	50976539	50976613	D	<no descrition>
ENSCJAG00000037163	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	63409495	63409794	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035682	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	35084847	35085143	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033447	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88707057	88707163	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026571	NOVEL	miRNA	ENSCJAG00000026571	chromosome:C_jacchus3.2.1:6:1:158406734:1	156971070	156971158	D	<no descrition>
ENSCJAG00000028728	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:14:1:108792865:1	39071576	39071739	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032319	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	138050046	138050132	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036707	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286273.1:1:44316:1	25886	26182	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025475	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:6:1:158406734:1	40139613	40139715	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036947	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	139229547	139229843	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032890	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	97595708	97595815	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028920	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1101923	1102016	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000025577	NOVEL	snoRNA	SNORA17	chromosome:C_jacchus3.2.1:1:1:210400635:1	180855524	180855655	R	Small nucleolar RNA SNORA17 [Source:RFAM;Acc:RF00560]
ENSCJAG00000024594	NOVEL	miRNA	ENSCJAG00000024594	chromosome:C_jacchus3.2.1:9:1:124281992:1	84854140	84854253	D	<no descrition>
ENSCJAG00000026065	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	46649040	46649157	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000025583	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	152333399	152333505	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028549	NOVEL	snoRNA	SNORD16	chromosome:C_jacchus3.2.1:10:1:132174527:1	8901702	8901800	R	Small nucleolar RNA SNORD16 [Source:RFAM;Acc:RF00138]
ENSCJAG00000025795	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	20939034	20939146	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034866	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	32554323	32554417	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029427	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	20872978	20873070	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036080	NOVEL	miRNA	ENSCJAG00000036080	chromosome:C_jacchus3.2.1:10:1:132174527:1	126668250	126668330	D	<no descrition>
ENSCJAG00000037066	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	108461069	108461364	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028070	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	136007386	136007489	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029690	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	54816790	54816881	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030917	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:13:1:117903854:1	5225888	5226238	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023586	NOVEL	miRNA	ENSCJAG00000023586	chromosome:C_jacchus3.2.1:1:1:210400635:1	168507654	168507765	D	<no descrition>
ENSCJAG00000025988	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	47372716	47372816	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000037867	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	124378290	124378586	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034325	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	182830313	182830416	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035031	NOVEL	miRNA	ENSCJAG00000035031	chromosome:C_jacchus3.2.1:1:1:210400635:1	186244326	186244420	D	<no descrition>
ENSCJAG00000026365	NOVEL	miRNA	ENSCJAG00000026365	chromosome:C_jacchus3.2.1:10:1:132174527:1	126792013	126792109	D	<no descrition>
ENSCJAG00000035315	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	202494610	202494715	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035267	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	74080366	74080480	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026044	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	45420298	45420393	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031614	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:12:1:121768101:1	89420831	89420899	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000025977	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	1865571	1865736	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037524	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	63738193	63738489	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030201	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	41621403	41621516	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024008	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	55558352	55558458	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036561	NOVEL	miRNA	ENSCJAG00000036561	chromosome:C_jacchus3.2.1:5:1:159171411:1	38533204	38533288	D	<no descrition>
ENSCJAG00000027360	NOVEL	miRNA	ENSCJAG00000027360	chromosome:C_jacchus3.2.1:X:1:142054208:1	48483790	48483872	D	<no descrition>
ENSCJAG00000026474	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:17:1:74750902:1	10441551	10441713	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037180	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	18843182	18843477	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034152	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	35516644	35516751	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031725	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	17508665	17508771	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032424	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	138187810	138187916	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033777	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	14085255	14085361	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032759	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:4:1:171630274:1	4344843	4344905	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000029599	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	36634922	36635224	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026488	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	32032051	32032156	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025363	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	107616222	107616325	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036824	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	88554851	88555151	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036506	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	40563973	40564268	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038038	NOVEL	miRNA	ENSCJAG00000038038	chromosome:C_jacchus3.2.1:8:1:128169293:1	12048103	12048203	R	<no descrition>
ENSCJAG00000037759	NOVEL	miRNA	ENSCJAG00000037759	chromosome:C_jacchus3.2.1:7:1:155834243:1	4693282	4693363	D	<no descrition>
ENSCJAG00000023878	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	121975035	121975136	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026844	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	110065163	110065264	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028189	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:5:1:159171411:1	158684333	158684462	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000027686	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:X:1:142054208:1	87984637	87984752	R	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000036462	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	116479183	116479478	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027650	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	15812152	15812315	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024244	NOVEL	miRNA	ENSCJAG00000024244	chromosome:C_jacchus3.2.1:2:1:204313951:1	119324517	119324603	D	<no descrition>
ENSCJAG00000038030	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	108229696	108229757	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026689	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	100173974	100174089	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023873	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	29842548	29842653	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030659	NOVEL	miRNA	ENSCJAG00000030659	chromosome:C_jacchus3.2.1:1:1:210400635:1	71115200	71115286	R	<no descrition>
ENSCJAG00000037877	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	11047510	11047805	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026619	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	116338598	116338738	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029433	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	148874862	148874965	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026544	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	53315182	53315346	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029064	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	86461609	86461715	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025033	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	98177033	98177173	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036720	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	132949158	132949454	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034601	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	1089975	1090267	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036901	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	171759672	171759968	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027779	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	45953913	45954013	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037094	NOVEL	miRNA	ENSCJAG00000037094	chromosome:C_jacchus3.2.1:3:1:190850796:1	34887508	34887619	R	<no descrition>
ENSCJAG00000024270	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	86849131	86849234	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029859	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	43533454	43533559	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025289	NOVEL	miRNA	ENSCJAG00000025289	chromosome:C_jacchus3.2.1:12:1:121768101:1	85481433	85481522	R	<no descrition>
ENSCJAG00000024253	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	82793983	82794091	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026970	NOVEL	miRNA	ENSCJAG00000026970	chromosome:C_jacchus3.2.1:X:1:142054208:1	34245320	34245457	R	<no descrition>
ENSCJAG00000025636	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:17:1:74750902:1	23300776	23300916	D	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000028095	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	36488788	36488902	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037124	NOVEL	misc_RNA	7SK	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1242659	1242918	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030357	NOVEL	miRNA	ENSCJAG00000030357	chromosome:C_jacchus3.2.1:4:1:171630274:1	118979461	118979557	R	<no descrition>
ENSCJAG00000035535	NOVEL	miRNA	ENSCJAG00000035535	chromosome:C_jacchus3.2.1:15:1:98464013:1	18003563	18003653	D	<no descrition>
ENSCJAG00000028202	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	22703243	22703349	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032235	NOVEL	miRNA	ENSCJAG00000032235	chromosome:C_jacchus3.2.1:12:1:121768101:1	48466961	48467036	D	<no descrition>
ENSCJAG00000026412	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:3:1:190850796:1	113054520	113054634	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000027920	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	3887717	3887855	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035167	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29541098	29541208	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032866	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	97318305	97318379	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034999	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:8:1:128169293:1	117569955	117570022	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000033588	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	31175792	31175893	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037598	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	65327694	65327987	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031145	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	80543806	80543899	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030339	NOVEL	miRNA	ENSCJAG00000030339	chromosome:C_jacchus3.2.1:15:1:98464013:1	17237734	17237791	R	<no descrition>
ENSCJAG00000030218	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	49704808	49704914	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037311	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	153758743	153759037	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034684	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	124649877	124649978	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027151	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	39709350	39709456	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037775	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	16843241	16843536	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035528	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	8342889	8343177	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038145	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	40945679	40945975	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033113	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	71627031	71627139	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026384	NOVEL	snoRNA	SNORA44	chromosome:C_jacchus3.2.1:1:1:210400635:1	103974131	103974254	R	Small nucleolar RNA SNORA44 [Source:RFAM;Acc:RF00405]
ENSCJAG00000035966	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	123415561	123415856	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037935	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	20151312	20151608	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023851	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	17483904	17484010	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036575	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	50031479	50031775	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035020	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	75773289	75773404	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026846	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	157788953	157789071	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035629	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	139426171	139426462	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026580	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	111361924	111362013	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031701	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	35234094	35234200	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028350	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	111520388	111520506	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025904	NOVEL	miRNA	ENSCJAG00000025904	chromosome:C_jacchus3.2.1:9:1:124281992:1	21365490	21365605	D	<no descrition>
ENSCJAG00000034734	NOVEL	miRNA	ENSCJAG00000034734	chromosome:C_jacchus3.2.1:2:1:204313951:1	197706074	197706208	D	<no descrition>
ENSCJAG00000034337	NOVEL	miRNA	ENSCJAG00000034337	chromosome:C_jacchus3.2.1:22:1:49145316:1	14151166	14151262	D	<no descrition>
ENSCJAG00000037115	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	87098206	87098502	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024222	NOVEL	miRNA	ENSCJAG00000024222	chromosome:C_jacchus3.2.1:15:1:98464013:1	45671753	45671879	D	<no descrition>
ENSCJAG00000036340	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	149351991	149352287	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028851	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	109575988	109576096	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024557	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	63923097	63923202	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025469	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	29353297	29353397	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029345	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	64049520	64049626	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027226	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	6194404	6194507	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026463	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:15:1:98464013:1	93628796	93628958	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027640	NOVEL	miRNA	ENSCJAG00000027640	chromosome:C_jacchus3.2.1:7:1:155834243:1	132309518	132309602	R	<no descrition>
ENSCJAG00000037114	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	9534050	9534340	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036146	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	34995116	34995391	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038021	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:7:1:155834243:1	145449564	145449666	D	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000025068	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	109348713	109349036	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029329	NOVEL	miRNA	ENSCJAG00000029329	chromosome:C_jacchus3.2.1:7:1:155834243:1	55575288	55575423	R	<no descrition>
ENSCJAG00000026739	NOVEL	snoRNA	SCARNA20	chromosome:C_jacchus3.2.1:19:1:49578535:1	21446434	21446569	R	Small Cajal body specific RNA 20 [Source:RFAM;Acc:RF00601]
ENSCJAG00000030620	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	11115506	11115600	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023465	NOVEL	miRNA	ENSCJAG00000023465	chromosome:C_jacchus3.2.1:3:1:190850796:1	109690140	109690226	D	<no descrition>
ENSCJAG00000032906	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:10:1:132174527:1	74203343	74203480	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000025886	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	121603898	121603989	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023913	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	78889343	78889444	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032978	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	162694223	162694329	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035589	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285907.1:1:79621:1	10380	10497	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034611	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	113953536	113953642	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029228	NOVEL	snoRNA	SNORA20	chromosome:C_jacchus3.2.1:16:1:96796970:1	32393047	32393177	R	Small nucleolar RNA SNORA20 [Source:RFAM;Acc:RF00401]
ENSCJAG00000027059	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	84225232	84225350	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026885	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	32252890	32252996	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027663	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	58917499	58917609	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023707	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:16:1:96796970:1	11730627	11730763	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000029088	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:2:1:204313951:1	37629897	37629985	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000026947	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:18:1:47448759:1	39378246	39378381	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000028221	NOVEL	misc_RNA	RNaseP_nuc	chromosome:C_jacchus3.2.1:10:1:132174527:1	44719942	44720276	R	Nuclear RNase P [Source:RFAM;Acc:RF00009]
ENSCJAG00000031238	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	66905765	66905865	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036887	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28267811	28268105	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025866	NOVEL	miRNA	ENSCJAG00000025866	chromosome:C_jacchus3.2.1:1:1:210400635:1	168508857	168508945	D	<no descrition>
ENSCJAG00000030755	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	5541634	5541731	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028315	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	20805461	20805567	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030660	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1309397	1309478	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000025505	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	46982406	46982516	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031226	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	25071109	25071215	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032226	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	63436716	63436817	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029103	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	15752805	15752912	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028218	NOVEL	snoRNA	snosnR66	chromosome:C_jacchus3.2.1:11:1:130397257:1	10096922	10097020	R	Small nucleolar RNA snR66 [Source:RFAM;Acc:RF00477]
ENSCJAG00000037063	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL284956.1:1:127784:1	38110	38272	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027259	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	34602671	34602778	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037244	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	83465766	83466062	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025645	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	770502	770608	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027924	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	83010282	83010422	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037269	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	6858914	6859209	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030435	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	106163287	106163392	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036313	NOVEL	miRNA	ENSCJAG00000036313	chromosome:C_jacchus3.2.1:7:1:155834243:1	49212929	49213055	D	<no descrition>
ENSCJAG00000032647	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	78911081	78911184	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035513	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	86035	86141	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036952	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	143515191	143515486	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026720	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	112815468	112815565	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036349	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	91601270	91601567	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034897	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	104127253	104127362	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033171	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	59474378	59474704	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025582	NOVEL	miRNA	ENSCJAG00000025582	chromosome:C_jacchus3.2.1:11:1:130397257:1	97628973	97629044	R	<no descrition>
ENSCJAG00000024649	NOVEL	miRNA	ENSCJAG00000024649	chromosome:C_jacchus3.2.1:X:1:142054208:1	66525237	66525334	R	<no descrition>
ENSCJAG00000028522	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	162529037	162529143	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033159	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	86599107	86599220	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025174	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	153952366	153952500	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034964	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:2:1:204313951:1	131420684	131420727	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000026132	NOVEL	snoRNA	SNORA68	chromosome:C_jacchus3.2.1:X:1:142054208:1	22726990	22727120	D	Small nucleolar RNA SNORA68 [Source:RFAM;Acc:RF00263]
ENSCJAG00000029149	NOVEL	miRNA	ENSCJAG00000029149	chromosome:C_jacchus3.2.1:X:1:142054208:1	68113106	68113192	R	<no descrition>
ENSCJAG00000037189	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	87245380	87245517	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035017	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	20683884	20684022	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033944	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	30172763	30172869	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030057	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	51468240	51468346	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028505	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	5476555	5476661	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025449	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	100198069	100198185	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037529	NOVEL	miRNA	ENSCJAG00000037529	chromosome:C_jacchus3.2.1:3:1:190850796:1	1273719	1273891	D	<no descrition>
ENSCJAG00000031538	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	96751346	96751447	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038044	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	67863416	67863712	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024277	NOVEL	snoRNA	snoZ30	chromosome:C_jacchus3.2.1:5:1:159171411:1	89108372	89108468	R	Z30 small nucleolar RNA [Source:RFAM;Acc:RF00288]
ENSCJAG00000032673	NOVEL	miRNA	ENSCJAG00000032673	chromosome:C_jacchus3.2.1:2:1:204313951:1	16771305	16771379	D	<no descrition>
ENSCJAG00000033900	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	32071421	32071519	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030937	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	21048738	21048843	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027043	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	44099856	44099962	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024656	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	114341898	114342013	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026587	NOVEL	miRNA	ENSCJAG00000026587	chromosome:C_jacchus3.2.1:22:1:49145316:1	13230411	13230506	D	<no descrition>
ENSCJAG00000036745	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	28158463	28158758	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033788	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	36160398	36160504	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028165	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	28448959	28449076	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025474	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	107327198	107327307	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033952	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	8278655	8278762	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033842	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	73544558	73544661	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037384	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	20309213	20309508	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035201	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	37844971	37845063	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029515	NOVEL	miRNA	ENSCJAG00000029515	chromosome:C_jacchus3.2.1:X:1:142054208:1	122453799	122453895	R	<no descrition>
ENSCJAG00000031888	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	125060512	125060636	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026075	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	53752599	53752700	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035059	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	83799324	83799419	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035738	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	69492530	69492624	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036004	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL286369.1:1:26461:1	19311	19451	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024631	NOVEL	snoRNA	SNORA8	chromosome:C_jacchus3.2.1:18:1:47448759:1	45237710	45237833	D	Small nucleolar RNA SNORA8 [Source:RFAM;Acc:RF00393]
ENSCJAG00000036467	NOVEL	miRNA	ENSCJAG00000036467	chromosome:C_jacchus3.2.1:9:1:124281992:1	6439531	6439626	D	<no descrition>
ENSCJAG00000034588	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	46810488	46810598	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037850	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	17669951	17670049	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025663	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	36569753	36569861	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033956	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	32394786	32394853	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000036061	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	86081661	86081956	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024566	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	51418895	51419253	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000038141	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	102948857	102949152	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025781	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:5:1:159171411:1	1867323	1867464	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000025678	NOVEL	miRNA	ENSCJAG00000025678	chromosome:C_jacchus3.2.1:16:1:96796970:1	8614815	8614929	R	<no descrition>
ENSCJAG00000033131	NOVEL	miRNA	ENSCJAG00000033131	chromosome:C_jacchus3.2.1:18:1:47448759:1	8208755	8208829	D	<no descrition>
ENSCJAG00000032833	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:7:1:155834243:1	146163574	146163689	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000034375	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:10:1:132174527:1	99088944	99089069	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000032100	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	74056290	74056391	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034585	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	25036052	25036154	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037290	NOVEL	miRNA	ENSCJAG00000037290	chromosome:C_jacchus3.2.1:10:1:132174527:1	95814671	95814766	D	<no descrition>
ENSCJAG00000030208	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:21:1:50472720:1	20424288	20424392	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037668	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	108186	108292	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026248	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	28148191	28148308	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028816	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	171460407	171460511	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029679	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	65586385	65586503	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024821	NOVEL	miRNA	ENSCJAG00000024821	chromosome:C_jacchus3.2.1:7:1:155834243:1	100643441	100643523	R	<no descrition>
ENSCJAG00000030531	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	136490893	136491000	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023748	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	23886687	23886989	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032813	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	12815076	12815174	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038029	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286460.1:1:253382:1	31122	31228	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036577	NOVEL	miRNA	ENSCJAG00000036577	chromosome:C_jacchus3.2.1:4:1:171630274:1	83676852	83676943	D	<no descrition>
ENSCJAG00000036309	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	89811850	89812147	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024249	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:22:1:49145316:1	31112651	31112790	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024157	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:1:1:210400635:1	90616149	90616300	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000029873	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	34606888	34606994	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023743	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	17708307	17708410	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024022	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	125165318	125165423	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037779	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	15808366	15808464	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030278	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	56481877	56481983	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036874	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	310594	310706	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028190	NOVEL	snoRNA	SNORD94	chromosome:C_jacchus3.2.1:14:1:108792865:1	20382598	20382734	R	Small nucleolar RNA SNORD94 [Source:RFAM;Acc:RF00613]
ENSCJAG00000036828	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	62848781	62849076	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023750	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	78487554	78487657	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000038072	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	35408177	35408475	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036018	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	16687193	16687489	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036333	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	135615884	135616177	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031085	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	69506570	69506669	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028572	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:15:1:98464013:1	5118272	5118403	D	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000029159	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	43691537	43691655	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036292	NOVEL	miRNA	ENSCJAG00000036292	chromosome:C_jacchus3.2.1:20:1:44557958:1	28342133	28342233	D	<no descrition>
ENSCJAG00000025107	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	24576236	24576338	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036592	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285162.1:1:36147:1	12768	12870	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032150	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	144931464	144931568	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037344	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	96873	96979	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029894	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	28179314	28179427	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026734	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	116056256	116056361	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028705	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	86952056	86952193	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000038130	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	189440641	189440936	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037276	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	25056570	25056861	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032055	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	39594302	39594418	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037509	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	16023247	16023544	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029416	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:3:1:190850796:1	130543498	130543631	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000036498	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	219336	219442	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030383	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	14938652	14938754	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030372	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	41185505	41185621	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024482	NOVEL	miRNA	ENSCJAG00000024482	chromosome:C_jacchus3.2.1:2:1:204313951:1	11814585	11814664	D	<no descrition>
ENSCJAG00000027797	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	56975950	56976054	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024893	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	138272199	138272306	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036817	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	7230967	7231262	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026962	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	7792618	7792718	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025564	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:14:1:108792865:1	98284170	98284298	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000036837	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	55069866	55070161	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036015	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	34530277	34530573	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028357	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	37726696	37726797	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033604	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	76676144	76676323	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000035117	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	111771117	111771229	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030742	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1286015	1286096	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000033858	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	27473278	27473385	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029796	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1325192	1325273	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000028992	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	7318101	7318202	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029656	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	127169106	127169271	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025171	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	103741437	103741547	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034147	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92718849	92718950	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036923	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	14345789	14346085	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026147	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:15:1:98464013:1	36975577	36975792	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000036316	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL286208.1:1:146031:1	96319	96482	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037838	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL289301.1:1:8843:1	6029	6135	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025634	NOVEL	miRNA	ENSCJAG00000025634	chromosome:C_jacchus3.2.1:12:1:121768101:1	58896417	58896498	R	<no descrition>
ENSCJAG00000025775	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	36782404	36782507	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024976	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	5151168	5151271	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035670	NOVEL	snRNA	U6atac	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	644830	644923	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000027693	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	119560681	119560787	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028093	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:16:1:96796970:1	7095226	7095353	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000037842	NOVEL	miRNA	ENSCJAG00000037842	chromosome:C_jacchus3.2.1:19:1:49578535:1	32946463	32946555	D	<no descrition>
ENSCJAG00000029071	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	155023842	155023947	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030384	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	26118218	26118324	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025234	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	50081063	50081169	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026742	NOVEL	snoRNA	SNORA58	chromosome:C_jacchus3.2.1:18:1:47448759:1	8215370	8215505	D	Small nucleolar RNA SNORA58 [Source:RFAM;Acc:RF00418]
ENSCJAG00000035920	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	28572591	28572888	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026899	NOVEL	snoRNA	SNORA3	chromosome:C_jacchus3.2.1:16:1:96796970:1	9027898	9028009	R	Small nucleolar RNA SNORA3/SNORA45 family [Source:RFAM;Acc:RF00334]
ENSCJAG00000026625	NOVEL	snoRNA	snR47	chromosome:C_jacchus3.2.1:3:1:190850796:1	117366787	117366841	D	Small nucleolar RNA snR47 [Source:RFAM;Acc:RF01203]
ENSCJAG00000036136	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	179569044	179569340	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025874	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	80147727	80147833	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029488	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	109038749	109038912	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036573	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	59351498	59351797	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035206	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	55835349	55835455	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034724	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	17653492	17653598	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037762	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	88476522	88476818	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033425	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	63430738	63430844	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027518	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	68851614	68851720	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027465	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1297929	1298010	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000031054	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	73771301	73771404	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023895	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	73452645	73452785	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030021	NOVEL	miRNA	ENSCJAG00000030021	chromosome:C_jacchus3.2.1:14:1:108792865:1	8571246	8571340	D	<no descrition>
ENSCJAG00000031372	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	16451034	16451135	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035443	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	35416678	35416779	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026923	NOVEL	miRNA	ENSCJAG00000026923	chromosome:C_jacchus3.2.1:10:1:132174527:1	71035804	71035906	D	<no descrition>
ENSCJAG00000025986	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:1:1:210400635:1	139357373	139357507	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000025261	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	204239917	204240024	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029177	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	84454063	84454169	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031064	NOVEL	miRNA	ENSCJAG00000031064	chromosome:C_jacchus3.2.1:10:1:132174527:1	126938792	126938877	D	<no descrition>
ENSCJAG00000029574	NOVEL	miRNA	ENSCJAG00000029574	chromosome:C_jacchus3.2.1:14:1:108792865:1	53538747	53538822	R	<no descrition>
ENSCJAG00000027124	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	85124844	85124941	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024154	NOVEL	snoRNA	SNORD10	chromosome:C_jacchus3.2.1:5:1:159171411:1	74271796	74271936	R	Small nucleolar RNA SNORD10 [Source:RFAM;Acc:RF01290]
ENSCJAG00000032590	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	99969962	99970057	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037463	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	136644596	136644892	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028362	NOVEL	snoRNA	SNORD17	chromosome:C_jacchus3.2.1:9:1:124281992:1	19806288	19806526	D	Small nucleolar RNA SNORD17 [Source:RFAM;Acc:RF00567]
ENSCJAG00000031879	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29552798	29552932	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024534	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	106645451	106645553	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035974	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	42250819	42251119	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033165	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	55440509	55440608	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034136	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	69515011	69515110	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027194	NOVEL	miRNA	ENSCJAG00000027194	chromosome:C_jacchus3.2.1:X:1:142054208:1	98589897	98589994	D	<no descrition>
ENSCJAG00000031389	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	41158843	41158967	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027967	NOVEL	miRNA	ENSCJAG00000027967	chromosome:C_jacchus3.2.1:5:1:159171411:1	109422369	109422453	D	<no descrition>
ENSCJAG00000030496	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	42122170	42122262	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032716	NOVEL	snoRNA	SNORA76	chromosome:C_jacchus3.2.1:1:1:210400635:1	196149282	196149416	R	Small nucleolar RNA SNORA76 [Source:RFAM;Acc:RF00598]
ENSCJAG00000025957	NOVEL	snoRNA	SNORD11	chromosome:C_jacchus3.2.1:10:1:132174527:1	23425294	23425377	R	Small nucleolar RNA SNORD11 [Source:RFAM;Acc:RF01182]
ENSCJAG00000036676	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	40170686	40170982	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027257	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	70972332	70972638	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026401	NOVEL	snoRNA	SNORD14	chromosome:C_jacchus3.2.1:11:1:130397257:1	80631300	80631387	R	Small nucleolar RNA SNORD14 [Source:RFAM;Acc:RF00016]
ENSCJAG00000037205	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	45253282	45253578	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027502	NOVEL	miRNA	ENSCJAG00000027502	chromosome:C_jacchus3.2.1:X:1:142054208:1	66016482	66016587	R	<no descrition>
ENSCJAG00000032227	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	53773621	53773724	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032559	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:10:1:132174527:1	88575854	88576143	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000028132	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	191226735	191226831	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030346	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	111001312	111001418	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024256	NOVEL	snoRNA	SNORA12	chromosome:C_jacchus3.2.1:12:1:121768101:1	87496120	87496266	R	Small nucleolar RNA SNORA12 [Source:RFAM;Acc:RF00586]
ENSCJAG00000028467	NOVEL	miRNA	ENSCJAG00000028467	chromosome:C_jacchus3.2.1:7:1:155834243:1	86879421	86879479	R	<no descrition>
ENSCJAG00000029969	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:8:1:128169293:1	43524716	43524847	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000023993	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	68530030	68530220	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037183	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28203512	28203807	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032873	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	122933112	122933252	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024901	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	78327484	78327647	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025601	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	111333323	111333426	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030656	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	60599118	60599224	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025828	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	102783550	102783660	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025728	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	72125903	72126017	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027878	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	18409644	18409750	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025907	NOVEL	miRNA	ENSCJAG00000025907	chromosome:C_jacchus3.2.1:X:1:142054208:1	138902538	138902618	R	<no descrition>
ENSCJAG00000034400	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	83437302	83437531	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037944	NOVEL	miRNA	ENSCJAG00000037944	chromosome:C_jacchus3.2.1:3:1:190850796:1	146372092	146372197	R	<no descrition>
ENSCJAG00000032646	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	25730181	25730485	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036554	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	107004956	107005246	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030954	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	20983960	20984027	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029922	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	31442082	31442188	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037070	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	27993509	27993805	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028242	NOVEL	snoRNA	SNORD2	chromosome:C_jacchus3.2.1:12:1:121768101:1	67659387	67659455	D	Small nucleolar RNA SNORD2 [Source:RFAM;Acc:RF01299]
ENSCJAG00000036089	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	11389989	11390288	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026562	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	115915754	115915852	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027026	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	24724154	24724274	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036757	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	2132586	2132881	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036646	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	40547830	40548125	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029831	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	44049381	44049481	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028570	NOVEL	miRNA	ENSCJAG00000028570	chromosome:C_jacchus3.2.1:19:1:49578535:1	11574912	11575021	R	<no descrition>
ENSCJAG00000033284	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	37746319	37746410	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030293	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:2:1:204313951:1	119645550	119645680	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000036371	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	16509559	16509853	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026089	NOVEL	snoRNA	SNORA19	chromosome:C_jacchus3.2.1:12:1:121768101:1	106858020	106858149	R	Small nucleolar RNA SNORA19 [Source:RFAM;Acc:RF00413]
ENSCJAG00000032249	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:14:1:108792865:1	105198986	105199180	R	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000037718	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	159809507	159809802	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029823	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	177063973	177064034	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026601	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	178264533	178264658	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000025730	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	47866258	47866359	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030916	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	47938441	47938741	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028200	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	141677623	141677728	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036475	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	43893693	43893989	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028145	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	40098863	40098965	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024066	NOVEL	miRNA	ENSCJAG00000024066	chromosome:C_jacchus3.2.1:12:1:121768101:1	12694390	12694472	R	<no descrition>
ENSCJAG00000034732	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	122278677	122278772	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030303	NOVEL	miRNA	ENSCJAG00000030303	chromosome:C_jacchus3.2.1:3:1:190850796:1	80984414	80984486	D	<no descrition>
ENSCJAG00000032107	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	74079826	74079932	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025725	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	86807320	86807423	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030838	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:X:1:142054208:1	46363799	46363927	D	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000031271	NOVEL	miRNA	ENSCJAG00000031271	chromosome:C_jacchus3.2.1:6:1:158406734:1	146844433	146844517	R	<no descrition>
ENSCJAG00000023599	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	5405207	5405379	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026849	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	105023813	105023922	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037670	NOVEL	miRNA	ENSCJAG00000037670	chromosome:C_jacchus3.2.1:3:1:190850796:1	33026438	33026524	R	<no descrition>
ENSCJAG00000029967	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	77554494	77554600	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030517	NOVEL	snoRNA	SNORA81	chromosome:C_jacchus3.2.1:21:1:50472720:1	35632167	35632342	D	Small nucleolar RNA SNORA81 [Source:RFAM;Acc:RF01241]
ENSCJAG00000035136	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:8:1:128169293:1	76957567	76957628	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030637	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	119394666	119394765	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027816	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	94287991	94288097	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029630	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	133673993	133674109	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029781	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	113811171	113811279	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024219	NOVEL	snoRNA	SNORD38	chromosome:C_jacchus3.2.1:7:1:155834243:1	79544594	79544662	D	Small nucleolar RNA SNORD38 [Source:RFAM;Acc:RF00212]
ENSCJAG00000037379	NOVEL	miRNA	ENSCJAG00000037379	chromosome:C_jacchus3.2.1:1:1:210400635:1	181301061	181301145	R	<no descrition>
ENSCJAG00000025503	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	144134369	144134476	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024163	NOVEL	snoRNA	snoU85	chromosome:C_jacchus3.2.1:9:1:124281992:1	18274313	18274641	D	Small nucleolar RNA U85 [Source:RFAM;Acc:RF01296]
ENSCJAG00000036733	NOVEL	miRNA	ENSCJAG00000036733	chromosome:C_jacchus3.2.1:1:1:210400635:1	193557747	193557830	D	<no descrition>
ENSCJAG00000037828	NOVEL	miRNA	ENSCJAG00000037828	scaffold:C_jacchus3.2.1:GL285046.1:1:7292:1	3266	3366	D	<no descrition>
ENSCJAG00000035798	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286442.1:1:463905:1	396612	396708	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035789	NOVEL	miRNA	ENSCJAG00000035789	chromosome:C_jacchus3.2.1:14:1:108792865:1	80436205	80436286	R	<no descrition>
ENSCJAG00000025305	NOVEL	miRNA	ENSCJAG00000025305	chromosome:C_jacchus3.2.1:8:1:128169293:1	119015203	119015295	D	<no descrition>
ENSCJAG00000029382	NOVEL	miRNA	ENSCJAG00000029382	chromosome:C_jacchus3.2.1:5:1:159171411:1	44503886	44503981	D	<no descrition>
ENSCJAG00000036579	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286239.1:1:94471:1	65191	65301	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030443	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	25627800	25627898	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034900	NOVEL	snoRNA	snoR38	chromosome:C_jacchus3.2.1:5:1:159171411:1	125844205	125844277	D	Small nucleolar RNA R38 [Source:RFAM;Acc:RF00213]
ENSCJAG00000035951	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	54326344	54326641	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026773	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	29997122	29997262	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037707	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	131552643	131552936	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027421	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:X:1:142054208:1	1467384	1467518	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000036822	NOVEL	miRNA	ENSCJAG00000036822	chromosome:C_jacchus3.2.1:12:1:121768101:1	89064258	89064345	R	<no descrition>
ENSCJAG00000026294	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	62937245	62937348	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025948	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	75521206	75521312	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032066	NOVEL	miRNA	ENSCJAG00000032066	chromosome:C_jacchus3.2.1:21:1:50472720:1	37893204	37893317	D	<no descrition>
ENSCJAG00000037763	NOVEL	miRNA	ENSCJAG00000037763	chromosome:C_jacchus3.2.1:15:1:98464013:1	62256238	62256294	D	<no descrition>
ENSCJAG00000025206	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	113296582	113296902	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037550	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	61910681	61910976	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030031	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	142947913	142948194	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027481	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	41201407	41201564	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030113	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	69607721	69607823	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029965	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:15:1:98464013:1	3256644	3256775	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000030825	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:11:1:130397257:1	118716583	118716761	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000031081	NOVEL	miRNA	ENSCJAG00000031081	chromosome:C_jacchus3.2.1:5:1:159171411:1	61811994	61812078	D	<no descrition>
ENSCJAG00000030094	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	24375461	24375564	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027545	NOVEL	snoRNA	SNORA43	chromosome:C_jacchus3.2.1:15:1:98464013:1	60849077	60849214	D	Small nucleolar RNA SNORA43 [Source:RFAM;Acc:RF00416]
ENSCJAG00000037945	NOVEL	miRNA	ENSCJAG00000037945	chromosome:C_jacchus3.2.1:13:1:117903854:1	50809229	50809310	R	<no descrition>
ENSCJAG00000026498	NOVEL	miRNA	ENSCJAG00000026498	chromosome:C_jacchus3.2.1:14:1:108792865:1	10715777	10715860	D	<no descrition>
ENSCJAG00000024477	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	71118556	71118863	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023478	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	48996960	48997062	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026284	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:16:1:96796970:1	24075319	24075449	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000036141	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	90582874	90583169	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028437	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	43122774	43122882	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035001	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	135472833	135472944	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030002	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	101584894	101585000	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023490	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	127852935	127853053	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030402	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	177604177	177604283	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024303	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	83621084	83621164	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031823	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	70188630	70188733	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037385	NOVEL	miRNA	ENSCJAG00000037385	chromosome:C_jacchus3.2.1:15:1:98464013:1	88408166	88408258	R	<no descrition>
ENSCJAG00000037789	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	97177152	97177454	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027675	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:12:1:121768101:1	2637517	2637648	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000024554	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	16312930	16313070	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030216	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	80752766	80752873	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036265	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	43302643	43302936	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034218	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	33154288	33154454	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025807	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	182647478	182647539	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000031590	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	19984980	19985078	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036802	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	68740673	68740958	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033213	NOVEL	miRNA	ENSCJAG00000033213	chromosome:C_jacchus3.2.1:12:1:121768101:1	28828966	28829048	D	<no descrition>
ENSCJAG00000027700	NOVEL	miRNA	ENSCJAG00000027700	chromosome:C_jacchus3.2.1:5:1:159171411:1	103711880	103711972	D	<no descrition>
ENSCJAG00000031988	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	35843743	35843848	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024411	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:19:1:49578535:1	25352461	25352601	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037184	NOVEL	miRNA	ENSCJAG00000037184	chromosome:C_jacchus3.2.1:14:1:108792865:1	9208192	9208278	R	<no descrition>
ENSCJAG00000037472	NOVEL	miRNA	ENSCJAG00000037472	scaffold:C_jacchus3.2.1:GL284843.1:1:16572:1	643	733	R	<no descrition>
ENSCJAG00000036779	NOVEL	miRNA	ENSCJAG00000036779	scaffold:C_jacchus3.2.1:GL290719.1:1:5376:1	136	211	D	<no descrition>
ENSCJAG00000025949	NOVEL	miRNA	ENSCJAG00000025949	chromosome:C_jacchus3.2.1:11:1:130397257:1	119933835	119933936	D	<no descrition>
ENSCJAG00000025640	NOVEL	snoRNA	SNORD33	chromosome:C_jacchus3.2.1:22:1:49145316:1	41376571	41376654	D	Small nucleolar RNA Z195/SNORD33/SNORD32 family [Source:RFAM;Acc:RF00133]
ENSCJAG00000028052	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126854675	126854749	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000027734	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	89489672	89489761	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026367	NOVEL	snoRNA	snosnR60_Z15	chromosome:C_jacchus3.2.1:X:1:142054208:1	44854525	44854596	R	Small nucleolar RNA snR60/Z15/Z230/Z193/J17 [Source:RFAM;Acc:RF00309]
ENSCJAG00000036150	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	49211126	49211424	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036704	NOVEL	miRNA	ENSCJAG00000036704	chromosome:C_jacchus3.2.1:5:1:159171411:1	57263343	57263401	D	<no descrition>
ENSCJAG00000030304	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	144718459	144718779	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036110	NOVEL	miRNA	ENSCJAG00000036110	chromosome:C_jacchus3.2.1:9:1:124281992:1	93941420	93941550	D	<no descrition>
ENSCJAG00000027376	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	111632386	111632549	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025498	NOVEL	miRNA	ENSCJAG00000025498	chromosome:C_jacchus3.2.1:4:1:171630274:1	59918742	59918861	R	<no descrition>
ENSCJAG00000030680	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	15392825	15392919	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032301	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:11:1:130397257:1	8875377	8875462	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000025710	NOVEL	miRNA	ENSCJAG00000025710	chromosome:C_jacchus3.2.1:18:1:47448759:1	11013693	11013806	R	<no descrition>
ENSCJAG00000025547	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	1279471	1279609	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034740	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	38506195	38506301	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031824	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	67064626	67064762	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035505	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	7251192	7251487	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026614	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	108844003	108844112	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037084	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	11136139	11136435	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027183	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	39187912	39188015	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024440	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	20886650	20886756	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035617	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	1182105	1182400	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028757	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1134855	1134950	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000030501	NOVEL	snoRNA	SCARNA16	chromosome:C_jacchus3.2.1:7:1:155834243:1	137480535	137480718	D	Small Cajal body specific RNA 16 [Source:RFAM;Acc:RF00424]
ENSCJAG00000027134	NOVEL	snoRNA	SNORA32	chromosome:C_jacchus3.2.1:16:1:96796970:1	75545577	75545697	R	Small nucleolar RNA SNORA32 [Source:RFAM;Acc:RF00421]
ENSCJAG00000035273	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	54247505	54247600	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036447	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	46456772	46457061	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035109	NOVEL	snoRNA	snoMe28S-Am2634	chromosome:C_jacchus3.2.1:2:1:204313951:1	161718402	161718503	D	Small nucleolar RNA Me28S-Am2634 [Source:RFAM;Acc:RF00537]
ENSCJAG00000037381	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	86973429	86973725	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025734	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	22465787	22466084	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030422	NOVEL	miRNA	ENSCJAG00000030422	chromosome:C_jacchus3.2.1:11:1:130397257:1	4297669	4297790	R	<no descrition>
ENSCJAG00000034091	NOVEL	snoRNA	snoZ5	chromosome:C_jacchus3.2.1:6:1:158406734:1	60539326	60539410	R	Small nucleolar RNA Z5 [Source:RFAM;Acc:RF01226]
ENSCJAG00000026028	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:19:1:49578535:1	23056107	23056247	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031030	NOVEL	miRNA	ENSCJAG00000031030	chromosome:C_jacchus3.2.1:3:1:190850796:1	13241509	13241590	D	<no descrition>
ENSCJAG00000027972	NOVEL	miRNA	ENSCJAG00000027972	chromosome:C_jacchus3.2.1:4:1:171630274:1	68136620	68136765	R	<no descrition>
ENSCJAG00000036138	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	98907220	98907513	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026915	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	115173117	115173222	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028123	NOVEL	miRNA	ENSCJAG00000028123	chromosome:C_jacchus3.2.1:15:1:98464013:1	20512541	20512630	R	<no descrition>
ENSCJAG00000037605	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	86801544	86801839	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037781	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	63534403	63534699	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026425	NOVEL	miRNA	ENSCJAG00000026425	chromosome:C_jacchus3.2.1:22:1:49145316:1	45042840	45042906	D	<no descrition>
ENSCJAG00000026755	NOVEL	snoRNA	snoMBII-202	chromosome:C_jacchus3.2.1:1:1:210400635:1	50963162	50963232	D	Small nucleolar RNA MBII-202 [Source:RFAM;Acc:RF00324]
ENSCJAG00000028325	NOVEL	snoRNA	SNORD35	chromosome:C_jacchus3.2.1:22:1:49145316:1	41377127	41377212	D	Small nucleolar RNA SNORD35 [Source:RFAM;Acc:RF00211]
ENSCJAG00000030214	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:11:1:130397257:1	44110180	44110312	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000029499	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	46601350	46601456	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025115	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	109848327	109848431	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034102	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	37082680	37082785	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025791	NOVEL	snoRNA	SNORA74	chromosome:C_jacchus3.2.1:12:1:121768101:1	33746119	33746317	R	Small nucleolar RNA SNORA74 [Source:RFAM;Acc:RF00090]
ENSCJAG00000025307	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	39036838	39036944	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034959	NOVEL	snoRNA	SCARNA11	chromosome:C_jacchus3.2.1:7:1:155834243:1	47893061	47893189	R	Small Cajal body specific RNA 11 [Source:RFAM;Acc:RF00564]
ENSCJAG00000035663	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285114.1:1:16625:1	5304	5600	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029768	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	19148817	19148932	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027084	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	150038784	150038893	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035885	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	240846	240947	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028703	NOVEL	miRNA	ENSCJAG00000028703	chromosome:C_jacchus3.2.1:5:1:159171411:1	9746834	9746911	D	<no descrition>
ENSCJAG00000024911	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	33030708	33030842	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032389	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	76942252	76942363	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036877	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL284841.1:1:31842:1	21055	21193	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037359	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	10320665	10320962	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024537	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1171172	1171263	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000029822	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	19105112	19105213	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030841	NOVEL	miRNA	ENSCJAG00000030841	chromosome:C_jacchus3.2.1:8:1:128169293:1	107825644	107825755	R	<no descrition>
ENSCJAG00000023481	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	16178388	16178489	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028273	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	50232345	50232451	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024856	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	78868451	78868557	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024908	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	189193031	189193130	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037035	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288646.1:1:14237:1	5799	5905	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035504	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	24072163	24072458	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030554	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	66246095	66246195	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027401	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	46239368	46239503	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027918	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	62962416	62962576	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028743	NOVEL	miRNA	ENSCJAG00000028743	chromosome:C_jacchus3.2.1:13:1:117903854:1	24588646	24588747	D	<no descrition>
ENSCJAG00000030445	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	24339085	24339248	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028027	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	54170764	54171094	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030170	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126870979	126871053	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000030477	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	41894366	41894525	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024131	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	68774570	68774676	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028674	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	62018362	62018463	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024683	NOVEL	miRNA	ENSCJAG00000024683	chromosome:C_jacchus3.2.1:13:1:117903854:1	57937606	57937697	D	<no descrition>
ENSCJAG00000027763	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	80728499	80728612	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035571	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	29185108	29185402	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032881	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	150042658	150042764	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030310	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:12:1:121768101:1	79671970	79672087	R	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000032386	NOVEL	miRNA	ENSCJAG00000032386	chromosome:C_jacchus3.2.1:5:1:159171411:1	75802451	75802530	D	<no descrition>
ENSCJAG00000024434	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:13:1:117903854:1	66177946	66178071	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000029294	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	43367746	43367849	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038131	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	9083188	9083483	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036099	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL285425.1:1:25305:1	6546	6659	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000024542	NOVEL	miRNA	ENSCJAG00000024542	chromosome:C_jacchus3.2.1:19:1:49578535:1	48900563	48900659	D	<no descrition>
ENSCJAG00000030595	NOVEL	miRNA	ENSCJAG00000030595	chromosome:C_jacchus3.2.1:2:1:204313951:1	56896311	56896405	D	<no descrition>
ENSCJAG00000025284	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1303665	1303746	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000029957	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	95577792	95577898	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026030	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	105868101	105868208	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035888	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	143908746	143909039	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026624	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	19890506	19890612	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028117	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	98138225	98138326	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029521	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	98725386	98725493	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024175	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	70727208	70727314	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037843	NOVEL	miRNA	ENSCJAG00000037843	chromosome:C_jacchus3.2.1:10:1:132174527:1	128847074	128847191	D	<no descrition>
ENSCJAG00000037636	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	122929057	122929350	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035530	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	32949916	32950211	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026255	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	132677837	132677943	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032760	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	80408415	80408515	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028247	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	64616955	64617061	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028635	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	83423084	83423203	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023810	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	28130150	28130508	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023693	NOVEL	miRNA	ENSCJAG00000023693	chromosome:C_jacchus3.2.1:9:1:124281992:1	30316251	30316338	R	<no descrition>
ENSCJAG00000032710	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	79548943	79549050	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024069	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	71771354	71771457	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030577	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	47608001	47608101	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036511	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	59803770	59804066	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033876	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	6761163	6761257	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024211	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	32068673	32068771	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025878	NOVEL	snoRNA	SNORD71	chromosome:C_jacchus3.2.1:20:1:44557958:1	26564758	26564843	D	Small nucleolar RNA SNORD71 [Source:RFAM;Acc:RF00576]
ENSCJAG00000037631	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	1208148	1208443	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029904	NOVEL	miRNA	ENSCJAG00000029904	chromosome:C_jacchus3.2.1:15:1:98464013:1	18431278	18431365	R	<no descrition>
ENSCJAG00000026576	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	41103994	41104106	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029223	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	108220266	108220368	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024001	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:6:1:158406734:1	143490805	143490938	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000023515	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	43393990	43394096	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023981	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	59593526	59593629	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037113	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	52585793	52586088	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036222	NOVEL	miRNA	ENSCJAG00000036222	chromosome:C_jacchus3.2.1:11:1:130397257:1	125765345	125765440	D	<no descrition>
ENSCJAG00000028349	NOVEL	miRNA	ENSCJAG00000028349	chromosome:C_jacchus3.2.1:9:1:124281992:1	18818498	18818569	D	<no descrition>
ENSCJAG00000034723	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29545083	29545182	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026893	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	96117927	96118067	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024693	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	84988270	84988376	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037080	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	37533006	37533302	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036416	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	14492431	14492725	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029508	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	49364481	49364622	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023988	NOVEL	miRNA	ENSCJAG00000023988	chromosome:C_jacchus3.2.1:1:1:210400635:1	76827240	76827319	D	<no descrition>
ENSCJAG00000031051	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:4:1:171630274:1	73686139	73686352	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000033899	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	161376859	161376961	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035495	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	108205794	108205910	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035880	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	74548542	74548841	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028752	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	107748514	107748616	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037485	NOVEL	miRNA	ENSCJAG00000037485	chromosome:C_jacchus3.2.1:X:1:142054208:1	107587776	107587864	R	<no descrition>
ENSCJAG00000030288	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	143475970	143476073	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028600	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	84888078	84888180	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034180	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	78036264	78036359	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035453	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	26838965	26839064	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024346	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	124968174	124968275	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023902	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:20:1:44557958:1	39375093	39375209	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000024621	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	140729289	140729390	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030992	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	83739508	83739626	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033844	NOVEL	snoRNA	SNORA74	chromosome:C_jacchus3.2.1:9:1:124281992:1	29151283	29151429	D	Small nucleolar RNA SNORA74 [Source:RFAM;Acc:RF00090]
ENSCJAG00000037804	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	136651967	136652262	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032670	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	170982608	170982707	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037101	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	45596720	45597017	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023864	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	173678841	173678946	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025661	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	46755768	46755871	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028035	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	45495948	45496050	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029907	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	36066970	36067082	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023606	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	139888027	139888130	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025159	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:13:1:117903854:1	50118482	50118609	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000032462	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:8:1:128169293:1	117635761	117635822	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000034857	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	28588155	28588255	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028684	NOVEL	miRNA	ENSCJAG00000028684	chromosome:C_jacchus3.2.1:4:1:171630274:1	57423326	57423448	D	<no descrition>
ENSCJAG00000034906	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	86548371	86548476	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036042	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	20460940	20461234	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037278	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	99193980	99194268	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028244	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	119950238	119950340	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029332	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	118579088	118579206	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033288	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	3772439	3772535	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030185	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	81069827	81070156	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026450	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:12:1:121768101:1	31085522	31085645	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000036535	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	202158614	202158909	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023880	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:14:1:108792865:1	98437405	98437539	D	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000036530	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	50323571	50323864	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034242	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:X:1:142054208:1	112101555	112101658	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000037749	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	40636378	40636671	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025254	NOVEL	miRNA	ENSCJAG00000025254	chromosome:C_jacchus3.2.1:15:1:98464013:1	16837948	16838025	R	<no descrition>
ENSCJAG00000024016	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	108451107	108451213	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024280	NOVEL	miRNA	ENSCJAG00000024280	chromosome:C_jacchus3.2.1:16:1:96796970:1	61616122	61616246	R	<no descrition>
ENSCJAG00000028210	NOVEL	snoRNA	SNORD81	chromosome:C_jacchus3.2.1:9:1:124281992:1	42692713	42692776	D	Small nucleolar RNA SNORD81 [Source:RFAM;Acc:RF00136]
ENSCJAG00000033000	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	18830399	18830673	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025330	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1327087	1327168	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000030163	NOVEL	snoRNA	SNORD87	chromosome:C_jacchus3.2.1:20:1:44557958:1	12891450	12891532	D	Small nucleolar RNA SNORD87 [Source:RFAM;Acc:RF00439]
ENSCJAG00000031671	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	177758556	177758659	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028018	NOVEL	miRNA	ENSCJAG00000028018	chromosome:C_jacchus3.2.1:13:1:117903854:1	60497830	60497907	R	<no descrition>
ENSCJAG00000031096	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:9:1:124281992:1	43256234	43256350	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000025706	NOVEL	miRNA	ENSCJAG00000025706	chromosome:C_jacchus3.2.1:5:1:159171411:1	71747703	71747791	R	<no descrition>
ENSCJAG00000029753	NOVEL	miRNA	ENSCJAG00000029753	chromosome:C_jacchus3.2.1:12:1:121768101:1	49206273	49206350	R	<no descrition>
ENSCJAG00000023973	NOVEL	miRNA	ENSCJAG00000023973	chromosome:C_jacchus3.2.1:X:1:142054208:1	139305337	139305417	R	<no descrition>
ENSCJAG00000024234	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	151299096	151299259	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037910	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	96830016	96830311	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024123	NOVEL	miRNA	ENSCJAG00000024123	chromosome:C_jacchus3.2.1:7:1:155834243:1	132072367	132072462	D	<no descrition>
ENSCJAG00000027192	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	91635202	91635308	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037837	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286434.1:1:6912:1	220	326	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035230	NOVEL	snoRNA	SNORA19	chromosome:C_jacchus3.2.1:4:1:171630274:1	73344517	73344592	R	Small nucleolar RNA SNORA19 [Source:RFAM;Acc:RF00413]
ENSCJAG00000033926	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	30198274	30198367	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029636	NOVEL	miRNA	ENSCJAG00000029636	chromosome:C_jacchus3.2.1:7:1:155834243:1	60027630	60027709	D	<no descrition>
ENSCJAG00000025079	NOVEL	miRNA	ENSCJAG00000025079	chromosome:C_jacchus3.2.1:17:1:74750902:1	40848797	40848884	R	<no descrition>
ENSCJAG00000025632	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	49529453	49529555	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033868	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	32432797	32432903	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037774	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286344.1:1:14317:1	2976	3074	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026856	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:3:1:190850796:1	150903887	150904022	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000023933	NOVEL	miRNA	ENSCJAG00000023933	chromosome:C_jacchus3.2.1:11:1:130397257:1	19880327	19880406	R	<no descrition>
ENSCJAG00000025688	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	26569462	26569569	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037500	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	61823884	61824180	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033971	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	73130079	73130356	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036956	NOVEL	miRNA	ENSCJAG00000036956	chromosome:C_jacchus3.2.1:12:1:121768101:1	18057697	18057781	R	<no descrition>
ENSCJAG00000030551	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	86836809	86836915	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025104	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	60345730	60345833	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037748	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	110455208	110455494	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035521	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	64493506	64493809	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036520	NOVEL	miRNA	ENSCJAG00000036520	chromosome:C_jacchus3.2.1:14:1:108792865:1	42169946	42170029	R	<no descrition>
ENSCJAG00000027334	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	83976684	83976796	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031657	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	598092	598192	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023871	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1310903	1310984	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000037663	NOVEL	miRNA	ENSCJAG00000037663	chromosome:C_jacchus3.2.1:4:1:171630274:1	10458214	10458301	R	<no descrition>
ENSCJAG00000036880	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285396.1:1:5396:1	4727	4833	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031859	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	126842466	126842537	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000023875	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	115688027	115688121	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025394	NOVEL	miRNA	ENSCJAG00000025394	chromosome:C_jacchus3.2.1:11:1:130397257:1	33820209	33820293	R	<no descrition>
ENSCJAG00000024898	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	37636430	37636554	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031374	NOVEL	snoRNA	SNORD64	chromosome:C_jacchus3.2.1:5:1:159171411:1	8289312	8289387	R	Small Nucleolar RNA SNORD64 [Source:RFAM;Acc:RF00570]
ENSCJAG00000026529	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126858854	126858927	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000026546	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	7393138	7393240	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030919	NOVEL	miRNA	ENSCJAG00000030919	chromosome:C_jacchus3.2.1:11:1:130397257:1	117170921	117171000	R	<no descrition>
ENSCJAG00000027120	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1276635	1276716	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000037925	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	128459020	128459316	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032901	NOVEL	miRNA	ENSCJAG00000032901	chromosome:C_jacchus3.2.1:8:1:128169293:1	26571775	26571907	D	<no descrition>
ENSCJAG00000035857	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	9365300	9365595	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033273	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	57517232	57517348	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037453	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	182512322	182512618	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035958	NOVEL	miRNA	ENSCJAG00000035958	chromosome:C_jacchus3.2.1:12:1:121768101:1	24784669	24784758	D	<no descrition>
ENSCJAG00000028046	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	160452821	160452927	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037794	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	9049736	9050031	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028333	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1344147	1344228	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000029706	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	181879912	181880021	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024494	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	51402020	51402138	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026225	NOVEL	snoRNA	SNORD62	chromosome:C_jacchus3.2.1:1:1:210400635:1	175574492	175574576	D	Small nucleolar RNA SNORD62 [Source:RFAM;Acc:RF00153]
ENSCJAG00000025420	NOVEL	miRNA	ENSCJAG00000025420	chromosome:C_jacchus3.2.1:12:1:121768101:1	121173663	121173774	D	<no descrition>
ENSCJAG00000028119	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:15:1:98464013:1	20750568	20750700	D	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000038109	NOVEL	miRNA	ENSCJAG00000038109	chromosome:C_jacchus3.2.1:1:1:210400635:1	163542657	163542751	R	<no descrition>
ENSCJAG00000031853	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:3:1:190850796:1	140759917	140760010	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000027004	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	22091078	22091178	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027593	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:5:1:159171411:1	8444219	8444350	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000028457	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	87305540	87305664	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032686	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:5:1:159171411:1	64270824	64270898	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000027653	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	77217704	77217818	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034402	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	55983255	55983360	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036413	NOVEL	miRNA	ENSCJAG00000036413	chromosome:C_jacchus3.2.1:1:1:210400635:1	107419609	107419675	R	<no descrition>
ENSCJAG00000029172	NOVEL	snoRNA	SNORA49	chromosome:C_jacchus3.2.1:9:1:124281992:1	123110310	123110445	D	Small nucleolar RNA SNORA49 [Source:RFAM;Acc:RF00562]
ENSCJAG00000030392	NOVEL	miRNA	ENSCJAG00000030392	chromosome:C_jacchus3.2.1:1:1:210400635:1	62227931	62228026	R	<no descrition>
ENSCJAG00000027677	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	87272322	87272428	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029886	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	41372550	41372655	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031593	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	45147374	45147469	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036845	NOVEL	miRNA	ENSCJAG00000036845	scaffold:C_jacchus3.2.1:GL284790.1:1:42014:1	4873	4959	D	<no descrition>
ENSCJAG00000033307	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	39899571	39899673	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027177	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	66738353	66738465	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029470	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1162004	1162095	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000027861	NOVEL	miRNA	ENSCJAG00000027861	chromosome:C_jacchus3.2.1:X:1:142054208:1	11460533	11460639	D	<no descrition>
ENSCJAG00000024888	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	35143113	35143253	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026866	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	19606118	19606224	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037708	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	73430966	73431262	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035185	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	46461907	46462013	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024046	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	77608340	77608448	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027498	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	118098955	118099095	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034735	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:5:1:159171411:1	111273147	111273266	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000027262	NOVEL	snoRNA	SNORA61	chromosome:C_jacchus3.2.1:4:1:171630274:1	113380828	113380956	D	Small nucleolar RNA SNORA61 [Source:RFAM;Acc:RF00420]
ENSCJAG00000026740	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	139453818	139453924	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024003	NOVEL	miRNA	ENSCJAG00000024003	chromosome:C_jacchus3.2.1:16:1:96796970:1	31310760	31310853	D	<no descrition>
ENSCJAG00000025573	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	101934619	101934782	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028474	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	117450418	117450523	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024962	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	63512852	63512955	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037614	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	21901965	21902251	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036196	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	48890003	48890295	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032303	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:16:1:96796970:1	44632300	44632361	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000031678	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	84556434	84556545	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023747	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	27574115	27574213	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031285	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	31124613	31124716	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037896	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	24896110	24896406	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033411	NOVEL	snoRNA	SNORA75	chromosome:C_jacchus3.2.1:9:1:124281992:1	19462824	19462977	D	Small nucleolar RNA SNORA75 [Source:RFAM;Acc:RF00072]
ENSCJAG00000032639	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	2234036	2234176	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027832	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	101479927	101480036	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031783	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	26045231	26045370	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031907	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	123376147	123376259	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029459	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	20635584	20635687	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037533	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	688910	689016	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033531	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:12:1:121768101:1	31217477	31217539	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026699	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	11985247	11985353	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035566	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	31021610	31021905	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036326	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	55771546	55771841	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024922	NOVEL	misc_RNA	CoTC_ribozyme	chromosome:C_jacchus3.2.1:11:1:130397257:1	68654314	68654497	R	Beta-globin co-transcriptional cleavage ribozyme [Source:RFAM;Acc:RF00621]
ENSCJAG00000031834	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	41036267	41036373	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036197	NOVEL	miRNA	ENSCJAG00000036197	chromosome:C_jacchus3.2.1:4:1:171630274:1	51360643	51360734	R	<no descrition>
ENSCJAG00000028890	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:21:1:50472720:1	28487232	28487372	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035675	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL284814.1:1:18834:1	5130	5235	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036574	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286306.1:1:8084:1	4534	4652	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034770	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	86940095	86940213	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035840	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	54485	54617	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030231	NOVEL	miRNA	ENSCJAG00000030231	chromosome:C_jacchus3.2.1:1:1:210400635:1	78274957	78275030	D	<no descrition>
ENSCJAG00000028806	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:11:1:130397257:1	67262510	67262647	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000029882	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	7764721	7764860	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037245	NOVEL	miRNA	ENSCJAG00000037245	chromosome:C_jacchus3.2.1:3:1:190850796:1	150412532	150412620	R	<no descrition>
ENSCJAG00000036419	NOVEL	miRNA	ENSCJAG00000036419	chromosome:C_jacchus3.2.1:6:1:158406734:1	158030767	158030841	D	<no descrition>
ENSCJAG00000027935	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16941228	16941304	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035659	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	38999680	38999978	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036270	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	652322	652618	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028400	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	67520202	67520320	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029265	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:19:1:49578535:1	25458556	25458684	R	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000035027	NOVEL	miRNA	ENSCJAG00000035027	chromosome:C_jacchus3.2.1:7:1:155834243:1	81249308	81249415	D	<no descrition>
ENSCJAG00000024791	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	52365857	52365997	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024237	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	1403169	1403270	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025165	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	56931396	56931494	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027127	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	142433134	142433237	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034710	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	24235442	24235578	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029106	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	6152335	6152474	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032741	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	43185449	43185555	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026581	NOVEL	miRNA	ENSCJAG00000026581	chromosome:C_jacchus3.2.1:1:1:210400635:1	183187928	183188021	R	<no descrition>
ENSCJAG00000027534	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1312785	1312866	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000027027	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	99792403	99792711	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026845	NOVEL	miRNA	ENSCJAG00000026845	chromosome:C_jacchus3.2.1:16:1:96796970:1	50852830	50852913	D	<no descrition>
ENSCJAG00000027184	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1134366	1134460	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000024950	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	96462361	96462467	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024975	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	117111807	117111915	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036610	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	55745727	55746024	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025594	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:20:1:44557958:1	26631337	26631471	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000030287	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	43929198	43929304	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027562	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	46152983	46153123	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035183	NOVEL	miRNA	ENSCJAG00000035183	chromosome:C_jacchus3.2.1:6:1:158406734:1	115701325	115701417	D	<no descrition>
ENSCJAG00000035602	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	116390354	116390650	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026448	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	72644285	72644391	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036107	NOVEL	miRNA	ENSCJAG00000036107	chromosome:C_jacchus3.2.1:11:1:130397257:1	98889951	98890051	D	<no descrition>
ENSCJAG00000037983	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	74405646	74405942	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026652	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	128731053	128731359	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037864	NOVEL	miRNA	ENSCJAG00000037864	chromosome:C_jacchus3.2.1:16:1:96796970:1	77951333	77951405	D	<no descrition>
ENSCJAG00000025000	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	43932122	43932285	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028696	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	61103484	61103596	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026620	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:X:1:142054208:1	110690982	110691203	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000035969	NOVEL	snoRNA	SNORD53_SNORD92	chromosome:C_jacchus3.2.1:14:1:108792865:1	79506955	79507040	R	Small nucleolar RNA SNORD53/SNORD92 [Source:RFAM;Acc:RF00325]
ENSCJAG00000025687	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	92795319	92795423	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032622	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	3705960	3706055	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037109	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	10832186	10832482	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036486	NOVEL	miRNA	ENSCJAG00000036486	chromosome:C_jacchus3.2.1:9:1:124281992:1	48543870	48543977	R	<no descrition>
ENSCJAG00000024168	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	53709797	53709909	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025592	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	42841346	42841449	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029429	NOVEL	miRNA	ENSCJAG00000029429	chromosome:C_jacchus3.2.1:1:1:210400635:1	180802009	180802067	D	<no descrition>
ENSCJAG00000030854	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:10:1:132174527:1	53567505	53567649	D	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000028678	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	8067705	8067867	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024274	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	70676662	70676774	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027887	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	36353448	36353553	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035728	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	121410246	121410542	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037107	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	26637910	26638200	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030915	NOVEL	miRNA	ENSCJAG00000030915	chromosome:C_jacchus3.2.1:4:1:171630274:1	69655376	69655489	R	<no descrition>
ENSCJAG00000034937	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	46922933	46923032	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026608	NOVEL	miRNA	ENSCJAG00000026608	chromosome:C_jacchus3.2.1:12:1:121768101:1	60992296	60992387	D	<no descrition>
ENSCJAG00000037784	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	45121796	45122087	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028850	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	90323852	90324113	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000034575	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	57881006	57881112	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024210	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:15:1:98464013:1	27365372	27365494	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000032694	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:20:1:44557958:1	22441384	22441490	R	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000028426	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	117214719	117214822	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034062	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	118581151	118581289	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029020	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	49200030	49200165	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030241	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	16541586	16541694	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030524	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	31282514	31282830	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035441	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	974085	974194	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037771	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	89600	89706	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025524	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:2:1:204313951:1	37423031	37423107	R	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000028332	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	106691583	106691914	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035258	NOVEL	snoRNA	SNORA3	chromosome:C_jacchus3.2.1:2:1:204313951:1	18739537	18739630	R	Small nucleolar RNA SNORA3/SNORA45 family [Source:RFAM;Acc:RF00334]
ENSCJAG00000035923	NOVEL	miRNA	ENSCJAG00000035923	chromosome:C_jacchus3.2.1:14:1:108792865:1	37833629	37833702	R	<no descrition>
ENSCJAG00000033448	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	147451460	147451561	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036100	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	13761325	13761617	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027396	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	47482500	47482596	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000038013	NOVEL	miRNA	ENSCJAG00000038013	chromosome:C_jacchus3.2.1:12:1:121768101:1	23612834	23612893	D	<no descrition>
ENSCJAG00000030237	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	66442005	66442305	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028885	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	135592528	135592634	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024907	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	73578469	73578601	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030112	NOVEL	miRNA	ENSCJAG00000030112	chromosome:C_jacchus3.2.1:20:1:44557958:1	6049823	6049949	D	<no descrition>
ENSCJAG00000031798	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	108108068	108108174	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031102	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	76683967	76684073	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029595	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:18:1:47448759:1	2736348	2736470	R	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000032533	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:13:1:117903854:1	39839428	39839499	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000029426	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	74240019	74240131	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037546	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL286464.1:1:259699:1	40242	40357	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036942	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	87387294	87387590	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037414	NOVEL	miRNA	ENSCJAG00000037414	chromosome:C_jacchus3.2.1:10:1:132174527:1	126964677	126964794	R	<no descrition>
ENSCJAG00000037913	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	184549240	184549534	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036464	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286575.1:1:25779:1	20462	20565	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031298	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:15:1:98464013:1	60168102	60168226	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000028993	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	32446395	32446558	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036102	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	82864174	82864469	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026259	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:13:1:117903854:1	40556024	40556140	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000026495	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	38987723	38987837	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037824	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	39764103	39764392	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023560	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	118001001	118001107	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037641	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	79520519	79520816	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037745	NOVEL	miRNA	ENSCJAG00000037745	chromosome:C_jacchus3.2.1:6:1:158406734:1	131374511	131374608	R	<no descrition>
ENSCJAG00000025045	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	36109969	36110068	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035989	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	121530886	121531181	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037125	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	127348844	127349144	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037880	NOVEL	miRNA	ENSCJAG00000037880	chromosome:C_jacchus3.2.1:8:1:128169293:1	64810464	64810571	R	<no descrition>
ENSCJAG00000036616	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	29468574	29468869	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034316	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	24432168	24432281	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023633	NOVEL	snoRNA	SNORA17	chromosome:C_jacchus3.2.1:7:1:155834243:1	148580643	148580772	D	Small nucleolar RNA SNORA17 [Source:RFAM;Acc:RF00560]
ENSCJAG00000025990	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	18096697	18096809	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036490	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	202793946	202794242	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024427	NOVEL	miRNA	ENSCJAG00000024427	chromosome:C_jacchus3.2.1:3:1:190850796:1	190652461	190652570	R	<no descrition>
ENSCJAG00000025912	NOVEL	snoRNA	SNORD65	chromosome:C_jacchus3.2.1:4:1:171630274:1	127849483	127849545	R	Small nucleolar RNA SNORD65 [Source:RFAM;Acc:RF00571]
ENSCJAG00000037239	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	62069	62189	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038003	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	278659	278952	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036109	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	83214969	83215270	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025294	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	118765286	118765406	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025793	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	73827936	73828042	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037106	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	38141202	38141498	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024439	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	108889886	108889989	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031635	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92357962	92358080	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037646	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286306.1:1:8084:1	791	909	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036866	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	222047	222153	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026037	NOVEL	miRNA	ENSCJAG00000026037	chromosome:C_jacchus3.2.1:19:1:49578535:1	4541724	4541832	D	<no descrition>
ENSCJAG00000037764	NOVEL	miRNA	ENSCJAG00000037764	scaffold:C_jacchus3.2.1:GL285116.1:1:14707:1	10344	10433	D	<no descrition>
ENSCJAG00000037704	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286479.1:1:211998:1	81977	82098	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032852	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:6:1:158406734:1	62830699	62830800	R	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000033026	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	65316726	65316831	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025899	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	18334376	18334478	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031098	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:12:1:121768101:1	37297375	37297490	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000032584	NOVEL	miRNA	ENSCJAG00000032584	chromosome:C_jacchus3.2.1:X:1:142054208:1	134351821	134351949	R	<no descrition>
ENSCJAG00000024844	NOVEL	miRNA	ENSCJAG00000024844	chromosome:C_jacchus3.2.1:13:1:117903854:1	8978801	8978888	D	<no descrition>
ENSCJAG00000029278	NOVEL	miRNA	ENSCJAG00000029278	chromosome:C_jacchus3.2.1:3:1:190850796:1	118053392	118053482	R	<no descrition>
ENSCJAG00000023952	NOVEL	miRNA	ENSCJAG00000023952	chromosome:C_jacchus3.2.1:22:1:49145316:1	37330811	37330885	R	<no descrition>
ENSCJAG00000036756	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	35927287	35927584	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028346	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	101652165	101652281	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031895	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29546298	29546401	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025984	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	103204670	103204810	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034209	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:X:1:142054208:1	117412703	117412776	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000025422	NOVEL	snoRNA	SNORD38	chromosome:C_jacchus3.2.1:7:1:155834243:1	139453938	139454006	R	Small nucleolar RNA SNORD38 [Source:RFAM;Acc:RF00212]
ENSCJAG00000035284	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	16611765	16611863	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029365	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	72025139	72025249	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028827	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	43923522	43923629	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025835	NOVEL	miRNA	ENSCJAG00000025835	chromosome:C_jacchus3.2.1:10:1:132174527:1	113143114	113143174	D	<no descrition>
ENSCJAG00000030074	NOVEL	miRNA	ENSCJAG00000030074	chromosome:C_jacchus3.2.1:1:1:210400635:1	90887013	90887111	R	<no descrition>
ENSCJAG00000029616	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	60734848	60734988	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028163	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	105130268	105130406	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030514	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	24070619	24070740	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026993	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	61981740	61981837	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032148	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	106671972	106672077	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029631	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	96202209	96202304	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027095	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1330601	1330682	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000035579	NOVEL	miRNA	ENSCJAG00000035579	chromosome:C_jacchus3.2.1:2:1:204313951:1	117643411	117643494	R	<no descrition>
ENSCJAG00000030470	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	32014322	32014427	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036857	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285584.1:1:19224:1	9833	9967	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028317	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	195472	195573	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036343	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	92834208	92834504	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037491	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	16390765	16391055	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036600	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	99440916	99441204	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025031	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:7:1:155834243:1	129308718	129308839	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000028447	NOVEL	snoRNA	SNORA77	chromosome:C_jacchus3.2.1:16:1:96796970:1	15391545	15391658	D	Small nucleolar RNA SNORA77 [Source:RFAM;Acc:RF00599]
ENSCJAG00000032063	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:6:1:158406734:1	88065360	88065556	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025482	NOVEL	miRNA	ENSCJAG00000025482	chromosome:C_jacchus3.2.1:8:1:128169293:1	108084528	108084612	R	<no descrition>
ENSCJAG00000027706	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	93441747	93441859	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031987	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	36304046	36304136	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032607	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:2:1:204313951:1	140728868	140728939	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000032749	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	13401211	13401317	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037301	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	38794937	38795227	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035943	NOVEL	miRNA	ENSCJAG00000035943	chromosome:C_jacchus3.2.1:4:1:171630274:1	32344814	32344899	D	<no descrition>
ENSCJAG00000024354	NOVEL	miRNA	ENSCJAG00000024354	chromosome:C_jacchus3.2.1:22:1:49145316:1	4503188	4503296	D	<no descrition>
ENSCJAG00000029804	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	33061668	33061763	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026302	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:9:1:124281992:1	37408523	37408659	R	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000032540	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	103203852	103203958	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026936	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:7:1:155834243:1	62693090	62693294	D	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000034261	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:19:1:49578535:1	14378436	14378686	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036508	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	29744545	29744841	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028939	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	101985316	101985418	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031197	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	79323295	79323390	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028819	NOVEL	snoRNA	SNORD78	chromosome:C_jacchus3.2.1:7:1:155834243:1	11822866	11822930	R	Small nucleolar RNA SNORD78 [Source:RFAM;Acc:RF00592]
ENSCJAG00000034087	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	31993296	31993399	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024564	NOVEL	miRNA	ENSCJAG00000024564	chromosome:C_jacchus3.2.1:12:1:121768101:1	91509766	91509863	R	<no descrition>
ENSCJAG00000027249	NOVEL	miRNA	ENSCJAG00000027249	chromosome:C_jacchus3.2.1:5:1:159171411:1	105783279	105783353	D	<no descrition>
ENSCJAG00000035137	NOVEL	miRNA	ENSCJAG00000035137	chromosome:C_jacchus3.2.1:18:1:47448759:1	29787814	29787888	D	<no descrition>
ENSCJAG00000024614	NOVEL	miRNA	ENSCJAG00000024614	chromosome:C_jacchus3.2.1:2:1:204313951:1	52307104	52307251	D	<no descrition>
ENSCJAG00000027227	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	51123288	51123388	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036967	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	52516113	52516409	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027278	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	57581143	57581249	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034589	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	84281777	84281878	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023911	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:10:1:132174527:1	7675817	7675932	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036081	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	15703905	15704201	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034697	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	5868486	5868591	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034252	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	35636617	35636728	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031606	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	145239499	145239771	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029749	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:8:1:128169293:1	62539067	62539258	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000034184	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	4403384	4403479	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027766	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	62768215	62768310	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035824	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	116392179	116392465	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033938	NOVEL	miRNA	ENSCJAG00000033938	chromosome:C_jacchus3.2.1:6:1:158406734:1	60178575	60178671	D	<no descrition>
ENSCJAG00000027584	NOVEL	snoRNA	snoU2-30	chromosome:C_jacchus3.2.1:8:1:128169293:1	68815854	68815923	R	Small nucleolar RNA U2-30 [Source:RFAM;Acc:RF00493]
ENSCJAG00000024722	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	39583208	39583313	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033943	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	93777763	93777866	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032223	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	41282391	41282497	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029742	NOVEL	miRNA	ENSCJAG00000029742	chromosome:C_jacchus3.2.1:11:1:130397257:1	114074874	114074957	R	<no descrition>
ENSCJAG00000028122	NOVEL	snoRNA	SNORA21	chromosome:C_jacchus3.2.1:X:1:142054208:1	139002968	139003104	R	Small nucleolar RNA SNORA21 [Source:RFAM;Acc:RF00412]
ENSCJAG00000036403	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	98751704	98751765	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030405	NOVEL	miRNA	ENSCJAG00000030405	chromosome:C_jacchus3.2.1:1:1:210400635:1	186406501	186406595	D	<no descrition>
ENSCJAG00000026443	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	119806599	119806708	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025935	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	148292827	148292944	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023831	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	64391653	64391793	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025231	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	100351658	100351756	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037912	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	89274167	89274459	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031867	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	26512109	26512216	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026634	NOVEL	miRNA	ENSCJAG00000026634	chromosome:C_jacchus3.2.1:X:1:142054208:1	48476370	48476460	D	<no descrition>
ENSCJAG00000027626	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	37876406	37876512	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032916	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	51181223	51181322	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030931	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	158520002	158520140	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027328	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	84699124	84699224	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026955	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	17454931	17455093	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026841	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	79875606	79875709	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028328	NOVEL	snoRNA	SNORA75	chromosome:C_jacchus3.2.1:16:1:96796970:1	1117225	1117352	D	Small nucleolar RNA SNORA75 [Source:RFAM;Acc:RF00072]
ENSCJAG00000024517	NOVEL	miRNA	ENSCJAG00000024517	chromosome:C_jacchus3.2.1:11:1:130397257:1	106727223	106727319	D	<no descrition>
ENSCJAG00000029924	NOVEL	miRNA	ENSCJAG00000029924	chromosome:C_jacchus3.2.1:10:1:132174527:1	80845523	80845607	R	<no descrition>
ENSCJAG00000025554	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:19:1:49578535:1	16359554	16359678	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000026299	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	64383314	64383454	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024296	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:15:1:98464013:1	71018382	71018542	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029135	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	60662010	60662150	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035054	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	41694038	41694156	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024754	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	14839575	14839682	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025691	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	127372574	127372683	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025086	NOVEL	miRNA	ENSCJAG00000025086	chromosome:C_jacchus3.2.1:8:1:128169293:1	108859074	108859148	R	<no descrition>
ENSCJAG00000027116	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:X:1:142054208:1	50333452	50333579	R	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000024004	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	103559831	103559925	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037138	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	203001663	203001957	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031541	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	19537922	19538017	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027636	NOVEL	snoRNA	SNORA21	chromosome:C_jacchus3.2.1:5:1:159171411:1	110732097	110732232	R	Small nucleolar RNA SNORA21 [Source:RFAM;Acc:RF00412]
ENSCJAG00000037057	NOVEL	miRNA	ENSCJAG00000037057	chromosome:C_jacchus3.2.1:2:1:204313951:1	151736682	151736757	R	<no descrition>
ENSCJAG00000035542	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286466.1:1:92110:1	71733	71834	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028022	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	5529042	5529149	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036929	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	61270136	61270432	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037536	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	7358304	7358598	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036660	NOVEL	miRNA	ENSCJAG00000036660	scaffold:C_jacchus3.2.1:GL285680.1:1:30929:1	8312	8376	D	<no descrition>
ENSCJAG00000027280	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	111431894	111432005	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029556	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	42772860	42772966	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037874	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	66901673	66901962	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029971	NOVEL	snoRNA	SNORA62	chromosome:C_jacchus3.2.1:17:1:74750902:1	69891173	69891326	D	Small nucleolar RNA SNORA62/SNORA6 family [Source:RFAM;Acc:RF00091]
ENSCJAG00000036166	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	87078855	87079154	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034465	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	6520869	6520930	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030572	NOVEL	miRNA	ENSCJAG00000030572	chromosome:C_jacchus3.2.1:X:1:142054208:1	48476732	48476799	D	<no descrition>
ENSCJAG00000033620	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	173792510	173792626	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031679	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:2:1:204313951:1	9845914	9846051	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000026888	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	150460515	150460616	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030198	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	112797797	112797937	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023940	NOVEL	snoRNA	SNORD91	chromosome:C_jacchus3.2.1:5:1:159171411:1	61158138	61158231	D	Small nucleolar RNA SNORD91 family [Source:RFAM;Acc:RF00580]
ENSCJAG00000024676	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	13033655	13033773	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024522	NOVEL	snoRNA	SNORD20	chromosome:C_jacchus3.2.1:6:1:158406734:1	147901052	147901131	R	Small nucleolar RNA SNORD20 [Source:RFAM;Acc:RF00217]
ENSCJAG00000027195	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	152434206	152434309	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030238	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	33907758	33907870	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034664	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	172869161	172869242	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026943	NOVEL	snoRNA	SCARNA15	chromosome:C_jacchus3.2.1:18:1:47448759:1	9908218	9908344	R	Small Cajal body specific RNA 15 [Source:RFAM;Acc:RF00426]
ENSCJAG00000034528	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	5437741	5437837	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025906	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	137198011	137198146	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025780	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	128477450	128477556	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032433	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	28141232	28141341	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037123	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	40199965	40200253	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023542	NOVEL	miRNA	ENSCJAG00000023542	chromosome:C_jacchus3.2.1:4:1:171630274:1	69681058	69681177	R	<no descrition>
ENSCJAG00000024768	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	79482863	79482979	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028011	NOVEL	miRNA	ENSCJAG00000028011	chromosome:C_jacchus3.2.1:12:1:121768101:1	83705961	83706057	R	<no descrition>
ENSCJAG00000031249	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	150608989	150609072	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037474	NOVEL	miRNA	ENSCJAG00000037474	chromosome:C_jacchus3.2.1:22:1:49145316:1	6149103	6149203	R	<no descrition>
ENSCJAG00000024480	NOVEL	snoRNA	SCARNA20	chromosome:C_jacchus3.2.1:18:1:47448759:1	34896894	34896991	R	Small Cajal body specific RNA 20 [Source:RFAM;Acc:RF00601]
ENSCJAG00000027777	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	108653391	108653499	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033375	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	31176625	31176730	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029465	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:21:1:50472720:1	31947430	31947547	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028969	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1147104	1147198	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000034328	NOVEL	miRNA	ENSCJAG00000034328	chromosome:C_jacchus3.2.1:9:1:124281992:1	65657209	65657307	R	<no descrition>
ENSCJAG00000028331	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	102664788	102664904	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037582	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	21507039	21507334	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037513	NOVEL	snoRNA	SNORD53_SNORD92	chromosome:C_jacchus3.2.1:14:1:108792865:1	79492376	79492453	R	Small nucleolar RNA SNORD53/SNORD92 [Source:RFAM;Acc:RF00325]
ENSCJAG00000034063	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	23810479	23810590	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023456	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	56312362	56312470	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027694	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	111092310	111092450	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030806	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	114127868	114128055	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000023463	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	112763615	112763718	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033028	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	95259695	95259805	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023724	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	57330481	57330594	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036130	NOVEL	miRNA	ENSCJAG00000036130	chromosome:C_jacchus3.2.1:17:1:74750902:1	52484745	52484839	R	<no descrition>
ENSCJAG00000034009	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	14434552	14434658	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023964	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	36042631	36042738	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025299	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:X:1:142054208:1	46455314	46455422	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000035786	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	81005883	81006171	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027768	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	69143073	69143171	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030279	NOVEL	snoRNA	SNORD105	chromosome:C_jacchus3.2.1:22:1:49145316:1	9511017	9511101	D	Small nucleolar RNA SNORD105 [Source:RFAM;Acc:RF00584]
ENSCJAG00000036611	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL284820.1:1:20815:1	19525	19636	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023943	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	157951273	157951375	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028297	NOVEL	miRNA	ENSCJAG00000028297	chromosome:C_jacchus3.2.1:2:1:204313951:1	172249154	172249248	D	<no descrition>
ENSCJAG00000035573	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	4075598	4075894	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037435	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	108162793	108163089	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036974	NOVEL	miRNA	ENSCJAG00000036974	chromosome:C_jacchus3.2.1:6:1:158406734:1	70117429	70117512	R	<no descrition>
ENSCJAG00000024955	NOVEL	snoRNA	SNORD12	chromosome:C_jacchus3.2.1:5:1:159171411:1	43326219	43326306	D	Small nucleolar SNORD12/SNORD106 [Source:RFAM;Acc:RF00581]
ENSCJAG00000025611	NOVEL	snoRNA	SNORA38	chromosome:C_jacchus3.2.1:17:1:74750902:1	42934436	42934566	R	Small nucleolar RNA SNORA38 [Source:RFAM;Acc:RF00428]
ENSCJAG00000028429	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	77696145	77696248	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032882	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	99358355	99358634	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028359	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	128201669	128201770	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032205	NOVEL	snoRNA	SNORA71	chromosome:C_jacchus3.2.1:5:1:159171411:1	32453506	32453639	R	Small nucleolar RNA SNORA71 [Source:RFAM;Acc:RF00056]
ENSCJAG00000023603	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	47192501	47192596	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036806	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	74415735	74416031	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036911	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	9423104	9423399	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023734	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	29066072	29066172	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034376	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	68573277	68573384	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036724	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL287372.1:1:5164:1	4939	5040	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025183	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	70918754	70918870	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030823	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	149685093	149685212	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031928	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	121437396	121437502	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036361	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	49825917	49826213	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036039	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	55804584	55804880	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036260	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285397.1:1:48639:1	47780	47882	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038062	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	119707786	119707886	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037410	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	31580607	31580903	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036670	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	109452027	109452144	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028061	NOVEL	miRNA	ENSCJAG00000028061	chromosome:C_jacchus3.2.1:5:1:159171411:1	60676313	60676416	D	<no descrition>
ENSCJAG00000026922	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	21957162	21957267	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027674	NOVEL	miRNA	ENSCJAG00000027674	chromosome:C_jacchus3.2.1:X:1:142054208:1	130782837	130782966	R	<no descrition>
ENSCJAG00000036710	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	24917221	24917505	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026154	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:7:1:155834243:1	106032696	106032859	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036429	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	158631489	158631785	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031190	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	98995122	98995213	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024709	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:15:1:98464013:1	91734992	91735333	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035424	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:15:1:98464013:1	49446710	49446775	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000023696	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	11130902	11131011	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032596	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	49415606	49415712	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030204	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	83091381	83091484	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036717	NOVEL	miRNA	ENSCJAG00000036717	chromosome:C_jacchus3.2.1:11:1:130397257:1	114447259	114447354	D	<no descrition>
ENSCJAG00000037010	NOVEL	miRNA	ENSCJAG00000037010	chromosome:C_jacchus3.2.1:11:1:130397257:1	80647575	80647656	R	<no descrition>
ENSCJAG00000031135	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	9257117	9257223	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026379	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	76787261	76787381	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037130	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	138328	138434	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025570	NOVEL	snoRNA	SNORA21	chromosome:C_jacchus3.2.1:2:1:204313951:1	157114576	157114712	D	Small nucleolar RNA SNORA21 [Source:RFAM;Acc:RF00412]
ENSCJAG00000028661	NOVEL	snoRNA	SNORD95	chromosome:C_jacchus3.2.1:2:1:204313951:1	60326529	60326596	R	Small nucleolar RNA SNORD95 [Source:RFAM;Acc:RF00189]
ENSCJAG00000024515	NOVEL	snoRNA	SNORA8	chromosome:C_jacchus3.2.1:4:1:171630274:1	43065185	43065324	D	Small nucleolar RNA SNORA8 [Source:RFAM;Acc:RF00393]
ENSCJAG00000024724	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	15875503	15875613	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031675	NOVEL	snoRNA	SCARNA6	chromosome:C_jacchus3.2.1:12:1:121768101:1	21296757	21297011	D	Small Cajal body specific RNA 6 [Source:RFAM;Acc:RF00478]
ENSCJAG00000037256	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	12007819	12008116	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024720	NOVEL	snoRNA	SNORA72	chromosome:C_jacchus3.2.1:17:1:74750902:1	16617752	16617882	R	Small nucleolar RNA SNORA72 [Source:RFAM;Acc:RF00139]
ENSCJAG00000027646	NOVEL	miRNA	ENSCJAG00000027646	chromosome:C_jacchus3.2.1:15:1:98464013:1	24717675	24717761	R	<no descrition>
ENSCJAG00000024964	NOVEL	miRNA	ENSCJAG00000024964	chromosome:C_jacchus3.2.1:17:1:74750902:1	63687879	63687973	R	<no descrition>
ENSCJAG00000037445	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	95980	96086	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037560	NOVEL	miRNA	ENSCJAG00000037560	chromosome:C_jacchus3.2.1:17:1:74750902:1	36067896	36067996	D	<no descrition>
ENSCJAG00000035536	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	83403027	83403323	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025433	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	146642464	146642570	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029537	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	113691430	113691527	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024215	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	62339953	62340065	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036915	NOVEL	miRNA	ENSCJAG00000036915	chromosome:C_jacchus3.2.1:5:1:159171411:1	139836284	139836370	R	<no descrition>
ENSCJAG00000036534	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	99600774	99601064	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035644	NOVEL	miRNA	ENSCJAG00000035644	chromosome:C_jacchus3.2.1:19:1:49578535:1	18031991	18032084	R	<no descrition>
ENSCJAG00000023508	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	31432514	31432620	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030095	NOVEL	miRNA	ENSCJAG00000030095	chromosome:C_jacchus3.2.1:8:1:128169293:1	115758615	115758689	R	<no descrition>
ENSCJAG00000037220	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	5032193	5032377	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024969	NOVEL	miRNA	ENSCJAG00000024969	chromosome:C_jacchus3.2.1:8:1:128169293:1	11605718	11605775	D	<no descrition>
ENSCJAG00000031861	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	81963050	81963156	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033099	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	202084430	202084538	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028994	NOVEL	miRNA	ENSCJAG00000028994	chromosome:C_jacchus3.2.1:5:1:159171411:1	13335268	13335359	R	<no descrition>
ENSCJAG00000036239	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	111701911	111702207	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026806	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	14917044	14917150	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033526	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	6956351	6956455	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030830	NOVEL	miRNA	ENSCJAG00000030830	chromosome:C_jacchus3.2.1:10:1:132174527:1	126783394	126783485	D	<no descrition>
ENSCJAG00000035654	NOVEL	miRNA	ENSCJAG00000035654	chromosome:C_jacchus3.2.1:16:1:96796970:1	92469845	92469943	D	<no descrition>
ENSCJAG00000026272	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	20707985	20708270	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033675	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:19:1:49578535:1	15751572	15751844	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036071	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	36705690	36705985	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024765	NOVEL	miRNA	ENSCJAG00000024765	chromosome:C_jacchus3.2.1:15:1:98464013:1	10361913	10361998	D	<no descrition>
ENSCJAG00000025700	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	59802050	59802364	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027326	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	10455326	10455421	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027010	NOVEL	miRNA	ENSCJAG00000027010	chromosome:C_jacchus3.2.1:12:1:121768101:1	54363030	54363108	D	<no descrition>
ENSCJAG00000024636	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	150959222	150959362	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035819	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	48949631	48949914	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029160	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	95784102	95784220	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027599	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	154462424	154462542	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034206	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	37203259	37203360	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036360	NOVEL	snoRNA	U8	scaffold:C_jacchus3.2.1:GL286468.1:1:194428:1	6018	6151	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000037170	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	84150270	84150560	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038125	NOVEL	miRNA	ENSCJAG00000038125	chromosome:C_jacchus3.2.1:5:1:159171411:1	76704744	76704820	D	<no descrition>
ENSCJAG00000035581	NOVEL	miRNA	ENSCJAG00000035581	chromosome:C_jacchus3.2.1:13:1:117903854:1	82664531	82664615	R	<no descrition>
ENSCJAG00000034970	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	91618233	91618354	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026918	NOVEL	miRNA	ENSCJAG00000026918	chromosome:C_jacchus3.2.1:17:1:74750902:1	68420025	68420101	D	<no descrition>
ENSCJAG00000029632	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	148373688	148373794	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027460	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	5650308	5650414	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035289	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16464782	16464892	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035555	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	6046324	6046616	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030107	NOVEL	miRNA	ENSCJAG00000030107	chromosome:C_jacchus3.2.1:11:1:130397257:1	9472250	9472331	D	<no descrition>
ENSCJAG00000029502	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	119259040	119259144	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030943	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	27674393	27674499	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028839	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	52863870	52863973	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035510	NOVEL	miRNA	ENSCJAG00000035510	chromosome:C_jacchus3.2.1:5:1:159171411:1	90487822	90487895	D	<no descrition>
ENSCJAG00000033995	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:6:1:158406734:1	71262283	71262417	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000036568	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	73356170	73356466	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035135	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	1684150	1684190	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037858	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	8599495	8599790	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026823	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	123787192	123787310	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036948	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286344.1:1:14317:1	5139	5237	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029538	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1318209	1318290	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000034513	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	8624003	8624107	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028182	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	7880809	7880927	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033177	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	105790013	105790131	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031046	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	23931628	23931792	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024231	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	70408795	70408901	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037510	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	26666114	26666410	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030003	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:14:1:108792865:1	98133923	98134056	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000037034	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	120059504	120059800	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027578	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1158038	1158129	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000034001	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	105900601	105900695	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026409	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1320140	1320221	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000027212	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	79215132	79215269	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027003	NOVEL	miRNA	ENSCJAG00000027003	chromosome:C_jacchus3.2.1:4:1:171630274:1	128768168	128768250	R	<no descrition>
ENSCJAG00000037308	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	49418105	49418401	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030290	NOVEL	miRNA	ENSCJAG00000030290	chromosome:C_jacchus3.2.1:5:1:159171411:1	75590081	75590162	D	<no descrition>
ENSCJAG00000025264	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	112888697	112888815	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030571	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	115005574	115005699	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000026234	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	257152	257268	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027389	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	95540453	95540571	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033739	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	155871228	155871334	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036995	NOVEL	miRNA	ENSCJAG00000036995	chromosome:C_jacchus3.2.1:18:1:47448759:1	889417	889487	R	<no descrition>
ENSCJAG00000034782	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	89935175	89935278	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025096	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:21:1:50472720:1	7411102	7411240	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025844	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	24286841	24286947	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034076	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	25150279	25150380	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027801	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	42963282	42963395	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032850	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	189207438	189207565	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024551	NOVEL	miRNA	ENSCJAG00000024551	chromosome:C_jacchus3.2.1:13:1:117903854:1	82401156	82401261	D	<no descrition>
ENSCJAG00000023906	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	25487906	25488069	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037314	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	148060745	148061041	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024588	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	38752505	38752623	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037411	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL284815.1:1:71166:1	3143	3249	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028552	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	50991488	50991598	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031654	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	7841854	7841955	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033491	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	30186144	30186250	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025502	NOVEL	miRNA	ENSCJAG00000025502	chromosome:C_jacchus3.2.1:6:1:158406734:1	148607438	148607532	D	<no descrition>
ENSCJAG00000030249	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	23512580	23512686	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036070	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	8034439	8034729	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023835	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1260411	1260492	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000032117	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	109861742	109861837	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030580	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126906488	126906559	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000034459	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	116949829	116949926	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028560	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	84582182	84582292	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000026123	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:18:1:47448759:1	44338213	44338347	R	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000033799	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	6982297	6982398	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035218	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	35150997	35151086	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031012	NOVEL	miRNA	ENSCJAG00000031012	chromosome:C_jacchus3.2.1:10:1:132174527:1	126965276	126965354	D	<no descrition>
ENSCJAG00000037895	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	63896156	63896448	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024454	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:9:1:124281992:1	16169488	16169604	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000025283	NOVEL	miRNA	ENSCJAG00000025283	chromosome:C_jacchus3.2.1:2:1:204313951:1	43945825	43945909	R	<no descrition>
ENSCJAG00000028656	NOVEL	miRNA	ENSCJAG00000028656	chromosome:C_jacchus3.2.1:5:1:159171411:1	133603564	133603654	D	<no descrition>
ENSCJAG00000026513	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	67141053	67141193	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036859	NOVEL	miRNA	ENSCJAG00000036859	scaffold:C_jacchus3.2.1:GL286378.1:1:15332:1	13510	13601	D	<no descrition>
ENSCJAG00000037820	NOVEL	miRNA	ENSCJAG00000037820	chromosome:C_jacchus3.2.1:X:1:142054208:1	103089098	103089183	D	<no descrition>
ENSCJAG00000026423	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	60846294	60846408	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029866	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	104875999	104876096	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037772	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	35099824	35100123	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034227	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	127319711	127319817	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024879	NOVEL	snoRNA	SNORD124	chromosome:C_jacchus3.2.1:5:1:159171411:1	111815439	111815542	R	Small nucleolar RNA SNORD124 [Source:RFAM;Acc:RF01211]
ENSCJAG00000029597	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	7295787	7295893	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037182	NOVEL	snoRNA	SNORD124	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	68046	68149	R	Small nucleolar RNA SNORD124 [Source:RFAM;Acc:RF01211]
ENSCJAG00000035354	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	71473683	71473783	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024936	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	54600044	54600207	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027618	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	123638566	123638668	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038010	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	88596841	88597137	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031074	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	14813022	14813141	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037457	NOVEL	snoRNA	SCARNA11	chromosome:C_jacchus3.2.1:X:1:142054208:1	113297556	113297634	D	Small Cajal body specific RNA 11 [Source:RFAM;Acc:RF00564]
ENSCJAG00000030627	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	4908907	4908995	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023982	NOVEL	miRNA	ENSCJAG00000023982	chromosome:C_jacchus3.2.1:X:1:142054208:1	16202046	16202131	D	<no descrition>
ENSCJAG00000037975	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	35977077	35977373	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033427	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:22:1:49145316:1	15466228	15466330	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000029601	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:9:1:124281992:1	95679685	95679801	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000029790	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	125590521	125590621	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037199	NOVEL	miRNA	ENSCJAG00000037199	chromosome:C_jacchus3.2.1:21:1:50472720:1	19740841	19740924	R	<no descrition>
ENSCJAG00000030153	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	57660640	57660807	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029660	NOVEL	miRNA	ENSCJAG00000029660	chromosome:C_jacchus3.2.1:7:1:155834243:1	24020953	24021039	D	<no descrition>
ENSCJAG00000026216	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	105842137	105842243	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033471	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:X:1:142054208:1	39399415	39399476	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000023890	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	117134563	117134862	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032705	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:20:1:44557958:1	10522047	10522108	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030355	NOVEL	miRNA	ENSCJAG00000030355	chromosome:C_jacchus3.2.1:14:1:108792865:1	62897811	62897951	D	<no descrition>
ENSCJAG00000035147	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:18:1:47448759:1	41577412	41577523	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028677	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	41834047	41834153	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028978	NOVEL	snoRNA	SNORA41	chromosome:C_jacchus3.2.1:22:1:49145316:1	31550396	31550528	R	Small nucleolar RNA SNORA41 [Source:RFAM;Acc:RF00403]
ENSCJAG00000024648	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	101110076	101110186	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034490	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:8:1:128169293:1	13335177	13335240	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026696	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	61732419	61732559	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036029	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	249488	249589	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030495	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11313313	11313453	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035624	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	101787955	101788250	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031960	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:8:1:128169293:1	6906981	6907112	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000030004	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:12:1:121768101:1	28301337	28301470	R	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000030573	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	77351253	77351360	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027661	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1159146	1159237	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000024371	NOVEL	miRNA	ENSCJAG00000024371	chromosome:C_jacchus3.2.1:15:1:98464013:1	3398508	3398586	D	<no descrition>
ENSCJAG00000037714	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	20614593	20614883	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024711	NOVEL	miRNA	ENSCJAG00000024711	chromosome:C_jacchus3.2.1:2:1:204313951:1	47182918	47182983	D	<no descrition>
ENSCJAG00000031792	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	87550075	87550176	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037420	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286296.1:1:32287:1	32015	32121	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027039	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	6626541	6626692	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036325	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	148230820	148231116	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030091	NOVEL	miRNA	ENSCJAG00000030091	chromosome:C_jacchus3.2.1:10:1:132174527:1	126969815	126969894	D	<no descrition>
ENSCJAG00000035621	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL286724.1:1:10397:1	3599	3738	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034811	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	61188685	61188774	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032397	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	52319741	52319847	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029063	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	43342645	43342946	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026280	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	87733352	87733453	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036046	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	49400804	49401099	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031022	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	87891694	87891797	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036391	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	194661299	194661405	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031020	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1284137	1284218	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000034677	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	94177742	94177839	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036812	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	60389083	60389378	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036536	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:15:1:98464013:1	49988830	49988892	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035714	NOVEL	miRNA	ENSCJAG00000035714	chromosome:C_jacchus3.2.1:5:1:159171411:1	108498378	108498462	R	<no descrition>
ENSCJAG00000029621	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	60683160	60683255	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036617	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	31434534	31434831	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030362	NOVEL	miRNA	ENSCJAG00000030362	chromosome:C_jacchus3.2.1:10:1:132174527:1	126783933	126784004	D	<no descrition>
ENSCJAG00000024424	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	95246875	95246978	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035164	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	111949021	111949124	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029078	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	61950871	61950974	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037341	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	9355346	9355642	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030480	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:21:1:50472720:1	36420085	36420220	R	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000032427	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:2:1:204313951:1	93440140	93440265	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000032491	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	192087310	192087380	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026099	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	68590324	68590440	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037492	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	190963417	190963715	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031293	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	36896493	36896599	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029288	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	128001711	128001820	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032039	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	35468990	35469051	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030143	NOVEL	miRNA	ENSCJAG00000030143	chromosome:C_jacchus3.2.1:7:1:155834243:1	12592431	12592500	R	<no descrition>
ENSCJAG00000035632	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	7706471	7706769	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028751	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	60052480	60052586	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027582	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	78233794	78233919	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035930	NOVEL	miRNA	ENSCJAG00000035930	chromosome:C_jacchus3.2.1:22:1:49145316:1	40627734	40627834	D	<no descrition>
ENSCJAG00000032839	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	59035316	59035410	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024535	NOVEL	miRNA	ENSCJAG00000024535	chromosome:C_jacchus3.2.1:5:1:159171411:1	21145574	21145703	D	<no descrition>
ENSCJAG00000030631	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	15364590	15364696	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030259	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	72903565	72903672	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030195	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	10052682	10052783	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027252	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	97724610	97724725	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036762	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	55147265	55147561	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023782	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	84705433	84705539	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031010	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	146464593	146464698	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025680	NOVEL	miRNA	ENSCJAG00000025680	chromosome:C_jacchus3.2.1:22:1:49145316:1	13111864	13111924	D	<no descrition>
ENSCJAG00000033974	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	123003561	123003662	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028689	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	6353468	6353574	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036321	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	137435	137541	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027572	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:18:1:47448759:1	9903170	9903305	R	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000034461	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	1533056	1533167	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025042	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	94335815	94335901	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036523	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL289280.1:1:8169:1	1872	1962	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037409	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL289149.1:1:11158:1	510	605	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027173	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	106232615	106232720	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028800	NOVEL	miRNA	ENSCJAG00000028800	chromosome:C_jacchus3.2.1:10:1:132174527:1	126754325	126754422	D	<no descrition>
ENSCJAG00000038009	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	107079375	107079663	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032140	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	17609585	17609678	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035648	NOVEL	miRNA	ENSCJAG00000035648	chromosome:C_jacchus3.2.1:5:1:159171411:1	93959939	93960022	D	<no descrition>
ENSCJAG00000033904	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	98219177	98219285	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025810	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	10335355	10335467	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032911	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	89975435	89975538	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036621	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	32222703	32222998	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031585	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	35246945	35247050	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028015	NOVEL	miRNA	ENSCJAG00000028015	chromosome:C_jacchus3.2.1:7:1:155834243:1	40243839	40243990	D	<no descrition>
ENSCJAG00000035909	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	113283497	113283792	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037389	NOVEL	miRNA	ENSCJAG00000037389	chromosome:C_jacchus3.2.1:7:1:155834243:1	56748017	56748105	R	<no descrition>
ENSCJAG00000030073	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	161329050	161329156	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036584	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	79589473	79589769	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026466	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	78608034	78608132	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037821	NOVEL	miRNA	ENSCJAG00000037821	chromosome:C_jacchus3.2.1:11:1:130397257:1	29255965	29256035	R	<no descrition>
ENSCJAG00000036882	NOVEL	miRNA	ENSCJAG00000036882	chromosome:C_jacchus3.2.1:7:1:155834243:1	128544484	128544567	R	<no descrition>
ENSCJAG00000034302	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	12437753	12437860	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025875	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	31814526	31814632	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024639	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	90815702	90815842	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033577	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	125930864	125930964	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024887	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	86365186	86365287	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028719	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	109145333	109145439	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037213	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	134700479	134700775	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034712	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:5:1:159171411:1	94271571	94271705	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000033691	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	37587164	37587259	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028626	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	73033407	73033500	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029920	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:7:1:155834243:1	122097471	122097602	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000030255	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	42408931	42409037	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030901	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	95242986	95243092	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026598	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	112784189	112784290	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028702	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	154418751	154418848	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034801	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	44974269	44974405	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028392	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	78624102	78624214	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035766	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	80132383	80132678	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036918	NOVEL	miRNA	ENSCJAG00000036918	chromosome:C_jacchus3.2.1:1:1:210400635:1	184518047	184518134	D	<no descrition>
ENSCJAG00000029726	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	149868526	149868644	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035965	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	8106555	8106854	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036868	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL286239.1:1:94471:1	66612	66775	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024435	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	186411733	186411841	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035780	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	3651637	3651917	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027613	NOVEL	miRNA	ENSCJAG00000027613	chromosome:C_jacchus3.2.1:17:1:74750902:1	7838755	7838850	D	<no descrition>
ENSCJAG00000024778	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	108029386	108029489	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025248	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	14176341	14176444	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023730	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	181546343	181546437	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034480	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	51898492	51898595	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035891	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	69615476	69615755	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023858	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	19248901	19249013	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033701	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	58527057	58527197	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035862	NOVEL	miRNA	ENSCJAG00000035862	chromosome:C_jacchus3.2.1:3:1:190850796:1	88811598	88811675	R	<no descrition>
ENSCJAG00000032342	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	1733702	1733814	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029120	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	6246255	6246355	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028118	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	48699471	48699612	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037192	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	29685678	29685971	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030017	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:4:1:171630274:1	91304377	91304589	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000031034	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	80331843	80331946	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031118	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	101556291	101556408	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024391	NOVEL	miRNA	ENSCJAG00000024391	chromosome:C_jacchus3.2.1:5:1:159171411:1	92984448	92984527	R	<no descrition>
ENSCJAG00000027728	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	40157409	40157528	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029617	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	57139951	57140053	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027338	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	46059906	46060012	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034176	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	23108428	23108534	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028423	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:6:1:158406734:1	80168991	80169202	D	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000028403	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:20:1:44557958:1	638069	638232	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030846	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	87355229	87355335	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037921	NOVEL	miRNA	ENSCJAG00000037921	chromosome:C_jacchus3.2.1:10:1:132174527:1	126958017	126958136	R	<no descrition>
ENSCJAG00000037547	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	109868217	109868513	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035439	NOVEL	miRNA	ENSCJAG00000035439	chromosome:C_jacchus3.2.1:2:1:204313951:1	152552506	152552597	D	<no descrition>
ENSCJAG00000031231	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:3:1:190850796:1	121762518	121762640	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000028647	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	111887046	111887183	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030520	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	35506643	35506746	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036605	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	132286752	132287048	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029483	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	90628222	90628555	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037692	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL284934.1:1:4795:1	1309	1425	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028465	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	115226961	115227063	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037958	NOVEL	miRNA	ENSCJAG00000037958	chromosome:C_jacchus3.2.1:9:1:124281992:1	63740514	63740590	R	<no descrition>
ENSCJAG00000030635	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	166781793	166781899	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028177	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	14458181	14458300	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024876	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	134356702	134356802	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037427	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	102780193	102780490	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028953	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	23582331	23582436	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025085	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	100813030	100813136	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028668	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	76326180	76326286	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035745	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286453.1:1:306671:1	224695	224991	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037624	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	33575810	33576105	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028658	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	68301412	68301552	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034711	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:1:1:210400635:1	175851036	175851134	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000026615	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	23697698	23697801	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027468	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	11526748	11526908	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034270	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	191841243	191841355	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032701	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	138356370	138356465	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029128	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1120709	1120806	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000025858	NOVEL	miRNA	ENSCJAG00000025858	chromosome:C_jacchus3.2.1:11:1:130397257:1	120506412	120506496	R	<no descrition>
ENSCJAG00000030161	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	13242710	13242816	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037660	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285433.1:1:24077:1	7045	7161	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027346	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	80671619	80671730	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026103	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	10316744	10316850	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029486	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	83697812	83697918	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024687	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	137584435	137584536	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025719	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	154576460	154576566	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035671	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	48959832	48959935	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030642	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	149270663	149270761	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035876	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	66761416	66761712	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024904	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	51906783	51906881	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035370	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	37656263	37656366	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035418	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	126839959	126840030	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000026268	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	167105933	167106253	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026141	NOVEL	snoRNA	SNORA79	chromosome:C_jacchus3.2.1:10:1:132174527:1	44695660	44695807	R	Small nucleolar RNA SNORA79 [Source:RFAM;Acc:RF00600]
ENSCJAG00000027691	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1258526	1258612	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000037862	NOVEL	miRNA	ENSCJAG00000037862	chromosome:C_jacchus3.2.1:1:1:210400635:1	21153540	21153633	R	<no descrition>
ENSCJAG00000032044	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	136659855	136659958	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037811	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	15582618	15582915	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035684	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	31425735	31426032	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037881	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	189456068	189456363	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023899	NOVEL	snoRNA	SNORD70	chromosome:C_jacchus3.2.1:6:1:158406734:1	117881735	117881817	D	Small nucleolar RNA SNORD70 [Source:RFAM;Acc:RF00575]
ENSCJAG00000026761	NOVEL	miRNA	ENSCJAG00000026761	chromosome:C_jacchus3.2.1:10:1:132174527:1	126195995	126196092	D	<no descrition>
ENSCJAG00000036345	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	4361490	4361791	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026462	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	920508	920647	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030903	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:19:1:49578535:1	23565488	23565566	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000028453	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	112631576	112631681	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037564	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	12408459	12408755	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028875	NOVEL	miRNA	ENSCJAG00000028875	chromosome:C_jacchus3.2.1:1:1:210400635:1	99535280	99535376	D	<no descrition>
ENSCJAG00000035799	NOVEL	snoRNA	SNORA16	scaffold:C_jacchus3.2.1:GL285073.1:1:10514:1	5371	5500	R	Small nucleolar RNA SNORA16B/SNORA16A family [Source:RFAM;Acc:RF00190]
ENSCJAG00000025707	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	141215853	141215959	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024334	NOVEL	miRNA	ENSCJAG00000024334	chromosome:C_jacchus3.2.1:1:1:210400635:1	152476983	152477052	R	<no descrition>
ENSCJAG00000028146	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	18807026	18807339	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037669	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286344.1:1:14317:1	1701	1812	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037455	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	36720797	36721093	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033548	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	44634723	44634823	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036539	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	33079518	33079814	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029646	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1305561	1305641	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000026200	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	96357026	96357144	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029243	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	81667402	81667507	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036151	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	128544403	128544680	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027915	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126915216	126915289	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000024000	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	137632101	137632265	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031279	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	61827423	61827526	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035895	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	22628128	22628423	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026934	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	139262456	139262596	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028451	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:X:1:142054208:1	117287041	117287244	D	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000033155	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	69810755	69810895	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025212	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	98906526	98906628	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027782	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	99541040	99541141	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033180	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	7327418	7327520	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027886	NOVEL	snoRNA	snoU85	chromosome:C_jacchus3.2.1:9:1:124281992:1	18822065	18822211	R	Small nucleolar RNA U85 [Source:RFAM;Acc:RF01296]
ENSCJAG00000028479	NOVEL	snoRNA	SCARNA21	chromosome:C_jacchus3.2.1:7:1:155834243:1	49830674	49830813	D	Small Cajal body specific RNA 21 [Source:RFAM;Acc:RF00602]
ENSCJAG00000029341	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:8:1:128169293:1	46185434	46185647	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000036590	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	124406959	124407255	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033356	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	9480266	9480406	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000038012	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	189547573	189547869	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028754	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	107945409	107945509	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025398	NOVEL	snoRNA	SNORA12	chromosome:C_jacchus3.2.1:16:1:96796970:1	64522256	64522407	R	Small nucleolar RNA SNORA12 [Source:RFAM;Acc:RF00586]
ENSCJAG00000035343	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92019177	92019281	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028054	NOVEL	miRNA	ENSCJAG00000028054	chromosome:C_jacchus3.2.1:7:1:155834243:1	25968536	25968632	D	<no descrition>
ENSCJAG00000025831	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	137246099	137246205	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025669	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	98833691	98833814	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037380	NOVEL	miRNA	ENSCJAG00000037380	scaffold:C_jacchus3.2.1:GL287619.1:1:4403:1	172	299	D	<no descrition>
ENSCJAG00000025087	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	98161612	98161714	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037122	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	150753860	150754162	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033036	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	16533047	16533154	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032444	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	40161271	40161382	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028526	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	48202826	48202935	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024974	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	31228332	31228450	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026021	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	3775227	3775328	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033562	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	6813369	6813477	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028203	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	11260436	11260537	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024875	NOVEL	miRNA	ENSCJAG00000024875	chromosome:C_jacchus3.2.1:9:1:124281992:1	53399270	53399357	R	<no descrition>
ENSCJAG00000025917	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	85327826	85327930	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027695	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	126807097	126807173	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000034853	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	88482075	88482176	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037366	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	142633645	142633936	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032357	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	98584352	98584395	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030377	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	30831745	30831838	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036609	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	61802884	61803180	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036862	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	4466247	4466546	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036382	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285449.1:1:11560:1	8740	8844	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024504	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	11356155	11356266	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024139	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	67075850	67075992	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034551	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	32439357	32439452	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034755	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	96706181	96706278	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038015	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL288734.1:1:12372:1	2219	2320	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024759	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	85793883	85793983	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037280	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	458366	458660	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027023	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	4542152	4542258	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030200	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	177377962	177378100	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000038153	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	153289557	153289851	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029075	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	162580495	162580658	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024239	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	100607500	100607600	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036075	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	1930965	1931262	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034741	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	85324795	85324898	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038136	NOVEL	miRNA	ENSCJAG00000038136	chromosome:C_jacchus3.2.1:11:1:130397257:1	37455221	37455308	R	<no descrition>
ENSCJAG00000037025	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	107858542	107858837	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033658	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	138890271	138890381	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024068	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	18425594	18425755	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028307	NOVEL	miRNA	ENSCJAG00000028307	chromosome:C_jacchus3.2.1:1:1:210400635:1	162653025	162653170	D	<no descrition>
ENSCJAG00000027499	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	61623761	61623882	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036656	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL290553.1:1:7597:1	5711	5827	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036798	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	60741452	60741750	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033172	NOVEL	snoRNA	SNORD63	chromosome:C_jacchus3.2.1:5:1:159171411:1	93822345	93822385	D	Small nucleolar RNA SNORD63 [Source:RFAM;Acc:RF00154]
ENSCJAG00000033619	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:20:1:44557958:1	36353519	36353808	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031916	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29519289	29519361	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023626	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	147286653	147286759	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026446	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	44932366	44932469	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029390	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	61370647	61370760	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033508	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	106115201	106115306	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035393	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	7327750	7327851	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029936	NOVEL	miRNA	ENSCJAG00000029936	chromosome:C_jacchus3.2.1:8:1:128169293:1	54010957	54011052	D	<no descrition>
ENSCJAG00000033193	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	153425628	153425734	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024359	NOVEL	miRNA	ENSCJAG00000024359	chromosome:C_jacchus3.2.1:22:1:49145316:1	45042637	45042701	D	<no descrition>
ENSCJAG00000029141	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	131166285	131166371	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036271	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	157367951	157368247	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027190	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	85015006	85015109	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025132	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	57936706	57936809	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023884	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	50513078	50513240	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037319	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	173666	173805	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025067	NOVEL	miRNA	ENSCJAG00000025067	chromosome:C_jacchus3.2.1:7:1:155834243:1	97750959	97751059	D	<no descrition>
ENSCJAG00000029561	NOVEL	miRNA	ENSCJAG00000029561	chromosome:C_jacchus3.2.1:X:1:142054208:1	57781095	57781204	D	<no descrition>
ENSCJAG00000028302	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:14:1:108792865:1	92344229	92344337	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000031994	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:9:1:124281992:1	12291917	12292032	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000030390	NOVEL	miRNA	ENSCJAG00000030390	chromosome:C_jacchus3.2.1:18:1:47448759:1	34524084	34524193	D	<no descrition>
ENSCJAG00000033895	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	36576043	36576155	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029386	NOVEL	miRNA	ENSCJAG00000029386	chromosome:C_jacchus3.2.1:1:1:210400635:1	130893406	130893482	R	<no descrition>
ENSCJAG00000024519	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	186181610	186181701	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026018	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1160189	1160280	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000027676	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	87435014	87435098	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030632	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	4445640	4445732	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031689	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	99024649	99024753	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030271	NOVEL	miRNA	ENSCJAG00000030271	chromosome:C_jacchus3.2.1:18:1:47448759:1	35488687	35488765	D	<no descrition>
ENSCJAG00000028520	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	128256421	128256757	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025715	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	125304680	125304786	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026907	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	69302289	69302407	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037549	NOVEL	miRNA	ENSCJAG00000037549	chromosome:C_jacchus3.2.1:1:1:210400635:1	203606306	203606394	R	<no descrition>
ENSCJAG00000028688	NOVEL	miRNA	ENSCJAG00000028688	chromosome:C_jacchus3.2.1:11:1:130397257:1	58693510	58693597	D	<no descrition>
ENSCJAG00000023594	NOVEL	snoRNA	SNORA47	chromosome:C_jacchus3.2.1:7:1:155834243:1	122728756	122728893	R	Small nucleolar RNA SNORA47 [Source:RFAM;Acc:RF01234]
ENSCJAG00000026578	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	99600146	99600471	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028864	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:15:1:98464013:1	33996663	33996962	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027453	NOVEL	miRNA	ENSCJAG00000027453	chromosome:C_jacchus3.2.1:10:1:132174527:1	47476526	47476602	R	<no descrition>
ENSCJAG00000031784	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:13:1:117903854:1	57602073	57602400	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031138	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	62859253	62859371	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026217	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	69316615	69316710	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025758	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	43881264	43881376	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023697	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:14:1:108792865:1	90577975	90578101	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000031352	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	26295537	26295642	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029941	NOVEL	miRNA	ENSCJAG00000029941	chromosome:C_jacchus3.2.1:12:1:121768101:1	65075208	65075360	R	<no descrition>
ENSCJAG00000036805	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	27152254	27152547	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030064	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:3:1:190850796:1	27308034	27308166	R	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000037705	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286270.1:1:51878:1	3470	3574	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026911	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	87490651	87490972	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032948	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	5793645	5793746	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036240	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	3732615	3732902	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027958	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	68895570	68895682	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024088	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	23893838	23894001	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025642	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:1:1:210400635:1	57815514	57815653	D	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000037042	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285917.1:1:27510:1	27233	27510	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023808	NOVEL	miRNA	ENSCJAG00000023808	chromosome:C_jacchus3.2.1:X:1:142054208:1	48489439	48489535	D	<no descrition>
ENSCJAG00000033765	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:4:1:171630274:1	93068091	93068213	D	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000031869	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	48455704	48455811	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038124	NOVEL	miRNA	ENSCJAG00000038124	chromosome:C_jacchus3.2.1:5:1:159171411:1	111479555	111479635	R	<no descrition>
ENSCJAG00000031943	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	73465984	73466093	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029017	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	7682191	7682292	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035993	NOVEL	miRNA	ENSCJAG00000035993	chromosome:C_jacchus3.2.1:12:1:121768101:1	50961149	50961235	R	<no descrition>
ENSCJAG00000024533	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	95631260	95631366	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033689	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:11:1:130397257:1	20189903	20190028	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000034526	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	119694523	119694585	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037810	NOVEL	miRNA	ENSCJAG00000037810	chromosome:C_jacchus3.2.1:11:1:130397257:1	124629024	124629105	D	<no descrition>
ENSCJAG00000027440	NOVEL	miRNA	ENSCJAG00000027440	chromosome:C_jacchus3.2.1:X:1:142054208:1	74938976	74939058	R	<no descrition>
ENSCJAG00000034441	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	99687277	99687415	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037615	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	19457357	19457655	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024124	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	100055360	100055464	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035051	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	40349909	40350082	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025056	NOVEL	snoRNA	SNORD38	chromosome:C_jacchus3.2.1:15:1:98464013:1	29126385	29126453	R	Small nucleolar RNA SNORD38 [Source:RFAM;Acc:RF00212]
ENSCJAG00000034193	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	116278117	116278286	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036695	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL284831.1:1:17695:1	1217	1315	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035665	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	33638091	33638387	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023644	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	41546026	41546127	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030417	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	109381502	109381601	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029201	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1297773	1297854	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000036639	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288600.1:1:14626:1	12072	12169	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026781	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	23571253	23571372	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029613	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:7:1:155834243:1	153849708	153849831	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000036678	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	2634745	2635045	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031032	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:7:1:155834243:1	73350588	73350722	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000025075	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	94932268	94932386	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025922	NOVEL	snoRNA	SNORD83	chromosome:C_jacchus3.2.1:9:1:124281992:1	53641423	53641499	D	Small nucleolar RNA SNORD83 [Source:RFAM;Acc:RF00137]
ENSCJAG00000036478	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	20356014	20356310	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035864	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	36014958	36015059	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032337	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	40261579	40261677	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027783	NOVEL	miRNA	ENSCJAG00000027783	chromosome:C_jacchus3.2.1:5:1:159171411:1	124019762	124019858	D	<no descrition>
ENSCJAG00000038067	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	36927464	36927759	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028977	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:13:1:117903854:1	47722414	47722555	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000031174	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	186397905	186398011	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029638	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	69435887	69435993	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026791	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	95288679	95288777	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027870	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	150864502	150864607	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000026140	NOVEL	miRNA	ENSCJAG00000026140	chromosome:C_jacchus3.2.1:1:1:210400635:1	6514836	6514906	D	<no descrition>
ENSCJAG00000033972	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	23811754	23811849	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037760	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288327.1:1:19367:1	3218	3318	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037105	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	46768969	46769079	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027351	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	65053573	65053854	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027995	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	94407865	94407971	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034404	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	45278735	45278821	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037310	NOVEL	miRNA	ENSCJAG00000037310	scaffold:C_jacchus3.2.1:GL289765.1:1:9046:1	6664	6745	R	<no descrition>
ENSCJAG00000036671	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	17413858	17414153	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037077	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	37429617	37429904	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035203	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	62611399	62611500	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037343	NOVEL	miRNA	ENSCJAG00000037343	chromosome:C_jacchus3.2.1:5:1:159171411:1	78567732	78567815	R	<no descrition>
ENSCJAG00000035549	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	60202648	60202944	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037946	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	62208756	62209051	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037871	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	88307195	88307491	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028153	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	16364658	16364775	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027991	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	55779779	55779919	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029696	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	198690254	198690417	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035605	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	113585777	113586069	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030428	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:11:1:130397257:1	25725323	25725439	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000026852	NOVEL	snoRNA	SNORA8	chromosome:C_jacchus3.2.1:4:1:171630274:1	39826633	39826775	R	Small nucleolar RNA SNORA8 [Source:RFAM;Acc:RF00393]
ENSCJAG00000035336	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	102269388	102269710	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025468	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	40589465	40589581	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037902	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	440553	440849	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029898	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	92950589	92950700	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028387	NOVEL	miRNA	ENSCJAG00000028387	chromosome:C_jacchus3.2.1:16:1:96796970:1	64192121	64192193	D	<no descrition>
ENSCJAG00000027852	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	74939853	74939958	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036759	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL289874.1:1:7591:1	7397	7503	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036076	NOVEL	miRNA	ENSCJAG00000036076	chromosome:C_jacchus3.2.1:1:1:210400635:1	198942247	198942331	R	<no descrition>
ENSCJAG00000034247	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	93127423	93127523	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033320	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	11695018	11695101	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035000	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	30002678	30002779	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037578	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	155235172	155235468	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026313	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	64452764	64452868	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037716	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286257.1:1:60026:1	22221	22517	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026896	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	131646558	131646657	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033416	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	18932981	18933086	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030526	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	59876836	59876954	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029112	NOVEL	snoRNA	SNORA57	chromosome:C_jacchus3.2.1:2:1:204313951:1	175835406	175835551	D	Small nucleolar RNA SNORA57 [Source:RFAM;Acc:RF00191]
ENSCJAG00000033355	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	8056054	8056154	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027231	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	73330100	73330205	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024997	NOVEL	snoRNA	SNORA46	chromosome:C_jacchus3.2.1:15:1:98464013:1	74289996	74290130	R	Small nucleolar RNA SNORA46 [Source:RFAM;Acc:RF00404]
ENSCJAG00000025930	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	91184739	91184855	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027398	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	105759679	105759780	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038074	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	132024776	132025068	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036958	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	38705540	38705837	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028266	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	20325635	20325963	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030748	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	26126116	26126238	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033625	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	18829950	18830055	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037901	NOVEL	miRNA	ENSCJAG00000037901	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	588176	588262	R	<no descrition>
ENSCJAG00000030344	NOVEL	miRNA	ENSCJAG00000030344	chromosome:C_jacchus3.2.1:2:1:204313951:1	72411043	72411158	D	<no descrition>
ENSCJAG00000028796	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	55194358	55194464	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034554	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	151492252	151492355	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029937	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:21:1:50472720:1	21036076	21036145	R	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000031609	NOVEL	miRNA	ENSCJAG00000031609	chromosome:C_jacchus3.2.1:2:1:204313951:1	114182072	114182164	D	<no descrition>
ENSCJAG00000024527	NOVEL	miRNA	ENSCJAG00000024527	chromosome:C_jacchus3.2.1:X:1:142054208:1	12854613	12854755	R	<no descrition>
ENSCJAG00000038004	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	201347891	201348187	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037868	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	30656651	30656945	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035599	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	9674479	9674772	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028731	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	151884382	151884500	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030367	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	23680391	23680508	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024108	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	28177412	28177540	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026769	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	71927855	71927997	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027240	NOVEL	miRNA	ENSCJAG00000027240	chromosome:C_jacchus3.2.1:X:1:142054208:1	66016664	66016735	R	<no descrition>
ENSCJAG00000031697	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	33575017	33575123	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024728	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	102825381	102825482	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023711	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	37025826	37026111	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026101	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	38152095	38152404	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029817	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:12:1:121768101:1	34771641	34771786	D	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000026780	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	46818787	46818888	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024672	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1149915	1150009	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000028064	NOVEL	miRNA	ENSCJAG00000028064	chromosome:C_jacchus3.2.1:7:1:155834243:1	68972907	68973002	R	<no descrition>
ENSCJAG00000035460	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	100295366	100295472	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023900	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	167785562	167785665	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033657	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	137775618	137775722	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034949	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	19862407	19862510	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037353	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	23293391	23293687	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034972	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	113294801	113294917	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026527	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:16:1:96796970:1	71624342	71624559	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037023	NOVEL	miRNA	ENSCJAG00000037023	chromosome:C_jacchus3.2.1:1:1:210400635:1	22460937	22461020	R	<no descrition>
ENSCJAG00000026144	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	126344346	126344437	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036078	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	31415601	31415897	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034267	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	17516995	17517098	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029795	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	74165811	74165917	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025089	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	110651225	110651330	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027479	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	26641636	26641756	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024562	NOVEL	miRNA	ENSCJAG00000024562	chromosome:C_jacchus3.2.1:11:1:130397257:1	120506194	120506303	R	<no descrition>
ENSCJAG00000030302	NOVEL	miRNA	ENSCJAG00000030302	chromosome:C_jacchus3.2.1:14:1:108792865:1	51383740	51383849	D	<no descrition>
ENSCJAG00000035529	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	9164138	9164441	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025701	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	9564807	9564909	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031699	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:16:1:96796970:1	64826461	64826587	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000036323	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	49889457	49889753	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032555	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	73542237	73542376	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025332	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	59658806	59658907	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027157	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	131789632	131789735	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024300	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	37907091	37907197	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027503	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	21434112	21434222	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031601	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	10541281	10541393	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028644	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	80443161	80443301	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034698	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	114644483	114644589	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035562	NOVEL	miRNA	ENSCJAG00000035562	chromosome:C_jacchus3.2.1:6:1:158406734:1	12732878	12732952	D	<no descrition>
ENSCJAG00000030760	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	129211092	129211198	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030856	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:5:1:159171411:1	100353986	100354107	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000037950	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	14437802	14438084	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038006	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	67371913	67372209	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023766	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	61875531	61875819	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030317	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	43780678	43780784	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027381	NOVEL	miRNA	ENSCJAG00000027381	chromosome:C_jacchus3.2.1:6:1:158406734:1	24038856	24038937	R	<no descrition>
ENSCJAG00000031367	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:11:1:130397257:1	73313376	73313437	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000034131	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	20291824	20291925	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038034	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	150889885	150890180	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027800	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	39310259	39310377	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023745	NOVEL	miRNA	ENSCJAG00000023745	chromosome:C_jacchus3.2.1:6:1:158406734:1	18788162	18788252	R	<no descrition>
ENSCJAG00000031339	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	51151388	51151525	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037981	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	42212524	42212820	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034621	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	13206873	13206985	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025268	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	2596982	2597145	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035633	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	169341000	169341294	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026303	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	40477840	40477943	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027882	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	50756628	50756756	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024661	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	66820996	66821135	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035985	NOVEL	miRNA	ENSCJAG00000035985	chromosome:C_jacchus3.2.1:22:1:49145316:1	18731622	18731704	D	<no descrition>
ENSCJAG00000030451	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	84808974	84809068	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025426	NOVEL	misc_RNA	RNase_MRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	126634410	126634676	D	RNase MRP [Source:RFAM;Acc:RF00030]
ENSCJAG00000032791	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	45126619	45126724	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024404	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	33577112	33577218	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037869	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	36608892	36609188	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035087	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:3:1:190850796:1	52683075	52683144	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000027016	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	66881423	66881529	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036742	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL285558.1:1:105768:1	85710	85810	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036819	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	21071207	21071503	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036142	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	138512552	138512836	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035765	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	99002160	99002456	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033130	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:4:1:171630274:1	30455863	30456025	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000029559	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	142060979	142061099	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036021	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	45281084	45281380	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027100	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	38323947	38324062	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025191	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	60349474	60349580	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030041	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:7:1:155834243:1	12930818	12930938	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000026874	NOVEL	snoRNA	SCARNA17	chromosome:C_jacchus3.2.1:1:1:210400635:1	185473461	185473598	D	small Cajal body-specific RNA 17 [Source:RFAM;Acc:RF00492]
ENSCJAG00000029127	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:9:1:124281992:1	93586457	93586592	D	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000037699	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	2251296	2251591	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026777	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	29039940	29040078	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023859	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	155037308	155037423	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000038059	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	62647739	62648035	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026330	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	84904012	84904114	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024201	NOVEL	snoRNA	SNORD91	chromosome:C_jacchus3.2.1:5:1:159171411:1	61157300	61157395	D	Small nucleolar RNA SNORD91 family [Source:RFAM;Acc:RF00580]
ENSCJAG00000024944	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	52767739	52767845	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029060	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	92648950	92649050	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029623	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	5794663	5794801	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023679	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	22957841	22958177	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029207	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	121000648	121000788	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023477	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	23529379	23529483	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026362	NOVEL	miRNA	ENSCJAG00000026362	chromosome:C_jacchus3.2.1:19:1:49578535:1	26563506	26563574	R	<no descrition>
ENSCJAG00000032105	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	110509948	110510054	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032982	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	10590259	10590358	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030268	NOVEL	miRNA	ENSCJAG00000030268	chromosome:C_jacchus3.2.1:X:1:142054208:1	76283173	76283253	R	<no descrition>
ENSCJAG00000035760	NOVEL	miRNA	ENSCJAG00000035760	chromosome:C_jacchus3.2.1:6:1:158406734:1	143512463	143512557	R	<no descrition>
ENSCJAG00000028271	NOVEL	snoRNA	SNORA5	chromosome:C_jacchus3.2.1:2:1:204313951:1	105122724	105122847	R	Small nucleolar RNA SNORA5 [Source:RFAM;Acc:RF00392]
ENSCJAG00000023683	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	68265086	68265192	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026821	NOVEL	miRNA	ENSCJAG00000026821	chromosome:C_jacchus3.2.1:20:1:44557958:1	8423320	8423396	R	<no descrition>
ENSCJAG00000025840	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:18:1:47448759:1	33192577	33192895	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030345	NOVEL	miRNA	ENSCJAG00000030345	chromosome:C_jacchus3.2.1:10:1:132174527:1	47107677	47107785	R	<no descrition>
ENSCJAG00000032782	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	72275295	72275391	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031154	NOVEL	miRNA	ENSCJAG00000031154	chromosome:C_jacchus3.2.1:X:1:142054208:1	134371806	134371934	R	<no descrition>
ENSCJAG00000036041	NOVEL	miRNA	ENSCJAG00000036041	scaffold:C_jacchus3.2.1:GL285246.1:1:55800:1	49156	49256	R	<no descrition>
ENSCJAG00000032359	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	27123386	27123487	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034192	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	107288738	107288844	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023710	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	133279071	133279189	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025163	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	75531227	75531332	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024731	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	70556627	70556751	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030215	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:7:1:155834243:1	62693987	62694189	D	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000037097	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	81969238	81969534	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025531	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	69841836	69841940	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031921	NOVEL	snoRNA	SNORA72	chromosome:C_jacchus3.2.1:17:1:74750902:1	6081163	6081283	D	Small nucleolar RNA SNORA72 [Source:RFAM;Acc:RF00139]
ENSCJAG00000025325	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	110351852	110351949	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027387	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:2:1:204313951:1	168159753	168159961	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037756	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286238.1:1:95433:1	78515	78622	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034788	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	23352320	23352422	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036494	NOVEL	miRNA	ENSCJAG00000036494	chromosome:C_jacchus3.2.1:11:1:130397257:1	113524194	113524271	D	<no descrition>
ENSCJAG00000026725	NOVEL	miRNA	ENSCJAG00000026725	chromosome:C_jacchus3.2.1:2:1:204313951:1	170920525	170920585	D	<no descrition>
ENSCJAG00000034049	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:22:1:49145316:1	11028455	11028580	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000032305	NOVEL	miRNA	ENSCJAG00000032305	chromosome:C_jacchus3.2.1:14:1:108792865:1	80771689	80771760	R	<no descrition>
ENSCJAG00000036626	NOVEL	miRNA	ENSCJAG00000036626	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	462185	462253	R	<no descrition>
ENSCJAG00000026589	NOVEL	snoRNA	SNORA53	chromosome:C_jacchus3.2.1:9:1:124281992:1	88682978	88683224	D	Small nucleolar RNA SNORA53 [Source:RFAM;Acc:RF00563]
ENSCJAG00000035546	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	67029504	67029799	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037419	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	18497619	18497914	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036795	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	22817811	22818107	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027253	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	17400113	17400219	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037806	NOVEL	miRNA	ENSCJAG00000037806	chromosome:C_jacchus3.2.1:12:1:121768101:1	2745609	2745697	R	<no descrition>
ENSCJAG00000031040	NOVEL	snoRNA	SNORA46	chromosome:C_jacchus3.2.1:10:1:132174527:1	102857783	102857905	D	Small nucleolar RNA SNORA46 [Source:RFAM;Acc:RF00404]
ENSCJAG00000036781	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	35167919	35168023	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024090	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	4302934	4303043	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037628	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	43546230	43546526	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034264	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	33478113	33478206	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027046	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	61119681	61119786	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036422	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:4:1:171630274:1	64453016	64453172	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000032664	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	151248233	151248336	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023592	NOVEL	snoRNA	SNORA50	chromosome:C_jacchus3.2.1:20:1:44557958:1	12595545	12595680	R	Small nucleolar RNA SNORA50 [Source:RFAM;Acc:RF00407]
ENSCJAG00000029175	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:4:1:171630274:1	35164655	35164784	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000036034	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	38182406	38182698	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036418	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285940.1:1:43478:1	27225	27521	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023638	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	4136754	4136860	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035321	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:4:1:171630274:1	38146958	38147033	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000036582	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	22963677	22963974	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034561	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	4997859	4997965	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035514	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	2819040	2819338	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031208	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	121317244	121317349	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024707	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	23634707	23634806	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037146	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	32120003	32120306	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037275	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	30344232	30344528	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028733	NOVEL	miRNA	ENSCJAG00000028733	chromosome:C_jacchus3.2.1:3:1:190850796:1	13316257	13316366	D	<no descrition>
ENSCJAG00000029467	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	4693607	4693710	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031056	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:2:1:204313951:1	75113365	75113494	D	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000026016	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	124782577	124782686	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028150	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	179042201	179042365	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029280	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	32376948	32377091	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027158	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	43056454	43056560	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024529	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	77234441	77234547	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029959	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	84625852	84626014	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037402	NOVEL	miRNA	ENSCJAG00000037402	chromosome:C_jacchus3.2.1:13:1:117903854:1	111636287	111636393	D	<no descrition>
ENSCJAG00000030540	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	114856113	114856253	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037309	NOVEL	miRNA	ENSCJAG00000037309	chromosome:C_jacchus3.2.1:4:1:171630274:1	139001650	139001731	R	<no descrition>
ENSCJAG00000034229	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	64986600	64986706	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035833	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	31668979	31669275	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026297	NOVEL	snoRNA	SNORA57	chromosome:C_jacchus3.2.1:2:1:204313951:1	67950771	67950915	D	Small nucleolar RNA SNORA57 [Source:RFAM;Acc:RF00191]
ENSCJAG00000034548	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	32562384	32562485	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035879	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	8534131	8534427	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030959	NOVEL	snoRNA	snoU105B	chromosome:C_jacchus3.2.1:22:1:49145316:1	9512723	9512802	D	Small nucleolar RNA U105B [Source:RFAM;Acc:RF01173]
ENSCJAG00000028069	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	80295492	80295604	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032316	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	86929317	86929421	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035685	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	83891340	83891636	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030833	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	11294995	11295099	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032508	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	3047405	3047511	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036552	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285286.1:1:66461:1	22942	23233	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024570	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	192045441	192045547	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036500	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	45018071	45018368	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029846	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:18:1:47448759:1	41940727	41940928	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000030704	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	76809154	76809260	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030103	NOVEL	miRNA	ENSCJAG00000030103	chromosome:C_jacchus3.2.1:10:1:132174527:1	47444908	47444990	R	<no descrition>
ENSCJAG00000037680	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	80471544	80471840	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025546	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	9521865	9522003	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032503	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	27292571	27292676	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026775	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	132352264	132352426	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027265	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	86210149	86210266	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032111	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	80271921	80272023	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037540	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	136840934	136841232	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023641	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	71406855	71407143	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024632	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:18:1:47448759:1	2419079	2419241	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036317	NOVEL	miRNA	ENSCJAG00000036317	chromosome:C_jacchus3.2.1:12:1:121768101:1	101586009	101586109	R	<no descrition>
ENSCJAG00000032751	NOVEL	snoRNA	SNORD60	chromosome:C_jacchus3.2.1:19:1:49578535:1	28110766	28110856	D	Small nucleolar RNA SNORD60 [Source:RFAM;Acc:RF00271]
ENSCJAG00000034426	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	25177312	25177427	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026493	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1144474	1144569	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000028186	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	89099513	89099799	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037258	NOVEL	miRNA	ENSCJAG00000037258	chromosome:C_jacchus3.2.1:11:1:130397257:1	50370824	50370933	D	<no descrition>
ENSCJAG00000037552	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	24918290	24918586	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036375	NOVEL	miRNA	ENSCJAG00000036375	chromosome:C_jacchus3.2.1:14:1:108792865:1	96358277	96358344	R	<no descrition>
ENSCJAG00000036842	NOVEL	snoRNA	SNORD39	chromosome:C_jacchus3.2.1:1:1:210400635:1	193260988	193261067	D	Small nucleolar RNA SNORD55/SNORD39 [Source:RFAM;Acc:RF00157]
ENSCJAG00000025088	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	20259978	20260079	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026198	NOVEL	snoRNA	SNORA38	chromosome:C_jacchus3.2.1:4:1:171630274:1	32177575	32177706	D	Small nucleolar RNA SNORA38 [Source:RFAM;Acc:RF00428]
ENSCJAG00000034825	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	20746517	20746613	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037338	NOVEL	snRNA	U6atac	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	485760	485884	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000037694	NOVEL	miRNA	ENSCJAG00000037694	scaffold:C_jacchus3.2.1:GL285336.1:1:24537:1	7920	8001	R	<no descrition>
ENSCJAG00000028477	NOVEL	miRNA	ENSCJAG00000028477	chromosome:C_jacchus3.2.1:2:1:204313951:1	34488448	34488525	R	<no descrition>
ENSCJAG00000026102	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	59474641	59474908	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030492	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	96502134	96502228	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024390	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	121759267	121759355	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026535	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	105471467	105471568	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029040	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	4091691	4091797	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030909	NOVEL	miRNA	ENSCJAG00000030909	chromosome:C_jacchus3.2.1:5:1:159171411:1	109554478	109554564	D	<no descrition>
ENSCJAG00000037976	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	24668663	24668959	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035142	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:12:1:121768101:1	78930009	78930113	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000035950	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	41669869	41670163	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027397	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	19355631	19355738	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029083	NOVEL	miRNA	ENSCJAG00000029083	chromosome:C_jacchus3.2.1:6:1:158406734:1	41966641	41966789	D	<no descrition>
ENSCJAG00000029005	NOVEL	miRNA	ENSCJAG00000029005	chromosome:C_jacchus3.2.1:4:1:171630274:1	21703201	21703278	R	<no descrition>
ENSCJAG00000025217	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	135276120	135276219	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027230	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	24098504	24098670	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029731	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:2:1:204313951:1	162777429	162777559	R	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000029162	NOVEL	snoRNA	SNORD83	chromosome:C_jacchus3.2.1:4:1:171630274:1	32070348	32070425	R	Small nucleolar RNA SNORD83 [Source:RFAM;Acc:RF00137]
ENSCJAG00000030809	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	41026288	41026426	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024715	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	13006958	13007062	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031066	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	54380549	54380642	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026052	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	975380	975482	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038075	NOVEL	miRNA	ENSCJAG00000038075	chromosome:C_jacchus3.2.1:17:1:74750902:1	47870978	47871042	D	<no descrition>
ENSCJAG00000024999	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	120607855	120607962	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030960	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:10:1:132174527:1	116687389	116687519	D	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000032085	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	21789148	21789252	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028455	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	24585751	24585914	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036193	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	66096418	66096717	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032541	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	116343017	116343135	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032938	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	71531592	71531696	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036283	NOVEL	miRNA	ENSCJAG00000036283	chromosome:C_jacchus3.2.1:14:1:108792865:1	64820114	64820190	D	<no descrition>
ENSCJAG00000025328	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	134696704	134696810	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033768	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	73782404	73782510	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035727	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	13725755	13726050	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028168	NOVEL	miRNA	ENSCJAG00000028168	chromosome:C_jacchus3.2.1:8:1:128169293:1	113500265	113500354	R	<no descrition>
ENSCJAG00000028965	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	176263329	176263648	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035475	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:6:1:158406734:1	64878520	64878645	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000033327	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	86878015	86878133	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037665	NOVEL	miRNA	ENSCJAG00000037665	chromosome:C_jacchus3.2.1:3:1:190850796:1	59647498	59647617	R	<no descrition>
ENSCJAG00000032422	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	25292647	25292750	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027883	NOVEL	snoRNA	SNORA41	chromosome:C_jacchus3.2.1:6:1:158406734:1	117643996	117644128	D	Small nucleolar RNA SNORA41 [Source:RFAM;Acc:RF00403]
ENSCJAG00000025713	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	11467866	11467974	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036183	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	112828455	112828754	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025395	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	99401997	99402103	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033396	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	61271037	61271144	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024839	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	33094614	33094715	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026057	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	164114715	164114819	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030294	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	114724489	114724594	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029296	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:17:1:74750902:1	33935476	33935607	R	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000024406	NOVEL	miRNA	ENSCJAG00000024406	chromosome:C_jacchus3.2.1:12:1:121768101:1	39263609	39263699	R	<no descrition>
ENSCJAG00000034060	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:19:1:49578535:1	24205541	24205660	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000026178	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	76013405	76013545	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028334	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	111922529	111922630	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033505	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	171774916	171775021	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023546	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	98819802	98819908	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027757	NOVEL	miRNA	ENSCJAG00000027757	chromosome:C_jacchus3.2.1:2:1:204313951:1	136553032	136553128	R	<no descrition>
ENSCJAG00000031453	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	25921615	25921744	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000024851	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	33256739	33256842	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000038108	NOVEL	miRNA	ENSCJAG00000038108	chromosome:C_jacchus3.2.1:X:1:142054208:1	85996539	85996630	R	<no descrition>
ENSCJAG00000034439	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	19277435	19277541	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032755	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	34742850	34742953	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031136	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	47562228	47562335	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028721	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	14532297	14532436	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030700	NOVEL	snoRNA	SNORA62	chromosome:C_jacchus3.2.1:3:1:190850796:1	126282857	126282953	R	Small nucleolar RNA SNORA62/SNORA6 family [Source:RFAM;Acc:RF00091]
ENSCJAG00000030966	NOVEL	snoRNA	SNORA72	chromosome:C_jacchus3.2.1:14:1:108792865:1	9369099	9369225	D	Small nucleolar RNA SNORA72 [Source:RFAM;Acc:RF00139]
ENSCJAG00000027078	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	96537048	96537149	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035061	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	107806833	107806939	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036189	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	54155763	54156059	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029000	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	173064279	173064387	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033146	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:10:1:132174527:1	18216809	18216870	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037221	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	20832118	20832413	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024421	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	26215744	26215845	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028991	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	124519439	124519545	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026747	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	96309807	96309913	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023525	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	122607067	122607178	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030881	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	566655	566756	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032094	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	55527436	55527541	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037142	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	38167799	38168096	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026701	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	116183083	116183223	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025762	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	39083096	39083191	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027623	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:12:1:121768101:1	87258097	87258222	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000011158	NOVEL	miRNA	ENSCJAG00000011158	chromosome:C_jacchus3.2.1:4:1:171630274:1	2842369	2842443	D	<no descrition>
ENSCJAG00000034566	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	85985115	85985222	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024563	NOVEL	snoRNA	SNORD82	chromosome:C_jacchus3.2.1:6:1:158406734:1	147905587	147905656	R	Small nucleolar RNA SNORD82 [Source:RFAM;Acc:RF00158]
ENSCJAG00000025978	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	84865563	84865703	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035847	NOVEL	miRNA	ENSCJAG00000035847	chromosome:C_jacchus3.2.1:15:1:98464013:1	45312958	45313035	R	<no descrition>
ENSCJAG00000029226	NOVEL	miRNA	ENSCJAG00000029226	chromosome:C_jacchus3.2.1:13:1:117903854:1	73532799	73532907	R	<no descrition>
ENSCJAG00000036236	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	61436257	61436541	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025979	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	74438963	74439069	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031854	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	20625604	20625708	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026195	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	49348435	49348553	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036363	NOVEL	miRNA	ENSCJAG00000036363	chromosome:C_jacchus3.2.1:X:1:142054208:1	38482077	38482182	D	<no descrition>
ENSCJAG00000031381	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	41559911	41560014	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023876	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1152454	1152547	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000027909	NOVEL	miRNA	ENSCJAG00000027909	chromosome:C_jacchus3.2.1:X:1:142054208:1	134422742	134422870	R	<no descrition>
ENSCJAG00000036565	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	228234	228340	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026058	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	48028691	48028793	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028648	NOVEL	miRNA	ENSCJAG00000028648	chromosome:C_jacchus3.2.1:X:1:142054208:1	134472101	134472181	R	<no descrition>
ENSCJAG00000027273	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	36225961	36226268	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027101	NOVEL	miRNA	ENSCJAG00000027101	chromosome:C_jacchus3.2.1:1:1:210400635:1	122762248	122762331	D	<no descrition>
ENSCJAG00000030781	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	120991358	120991459	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030995	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	107978576	107978676	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024465	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	184862921	184863027	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035531	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	21152556	21152852	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030541	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	9854522	9854628	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031844	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:18:1:47448759:1	18205858	18206162	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026097	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	171535381	171535476	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034398	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	18824125	18824231	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035140	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	111479858	111479995	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030335	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	41715554	41715655	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024609	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:14:1:108792865:1	18855016	18855180	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028768	NOVEL	miRNA	ENSCJAG00000028768	chromosome:C_jacchus3.2.1:4:1:171630274:1	97143844	97143934	D	<no descrition>
ENSCJAG00000035553	NOVEL	miRNA	ENSCJAG00000035553	scaffold:C_jacchus3.2.1:GL288607.1:1:14345:1	6541	6627	R	<no descrition>
ENSCJAG00000024281	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	86060782	86060884	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036254	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	107763094	107763390	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027769	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	31526842	31526945	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029946	NOVEL	miRNA	ENSCJAG00000029946	chromosome:C_jacchus3.2.1:11:1:130397257:1	37590669	37590782	D	<no descrition>
ENSCJAG00000034584	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:2:1:204313951:1	87823207	87823267	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035038	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:10:1:132174527:1	960213	960410	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037293	NOVEL	miRNA	ENSCJAG00000037293	chromosome:C_jacchus3.2.1:12:1:121768101:1	39058052	39058157	D	<no descrition>
ENSCJAG00000024685	NOVEL	misc_RNA	RNaseP_nuc	chromosome:C_jacchus3.2.1:3:1:190850796:1	35246041	35246351	D	Nuclear RNase P [Source:RFAM;Acc:RF00009]
ENSCJAG00000026321	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	50473654	50473757	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024126	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	123014643	123014783	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033482	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	136254584	136254850	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028535	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	42657980	42658085	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030069	NOVEL	snoRNA	SNORD12	chromosome:C_jacchus3.2.1:5:1:159171411:1	43324836	43324929	D	Small nucleolar SNORD12/SNORD106 [Source:RFAM;Acc:RF00581]
ENSCJAG00000023720	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	120706955	120707061	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027703	NOVEL	miRNA	ENSCJAG00000027703	chromosome:C_jacchus3.2.1:21:1:50472720:1	37155885	37155984	D	<no descrition>
ENSCJAG00000035674	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	25276591	25276881	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030695	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	41482906	41483046	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029862	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	138285227	138285334	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036955	NOVEL	miRNA	ENSCJAG00000036955	chromosome:C_jacchus3.2.1:7:1:155834243:1	69076865	69076958	D	<no descrition>
ENSCJAG00000031791	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	116482944	116483065	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026338	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1253515	1253596	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000036910	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	11677820	11678116	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031720	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	22353946	22354047	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037765	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	7498940	7499231	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028538	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	88351390	88351495	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030532	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	79558208	79558310	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024486	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:19:1:49578535:1	9220261	9220353	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000034187	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	27193373	27193486	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032830	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:3:1:190850796:1	112405171	112405276	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000025181	NOVEL	snoRNA	SNORA5	chromosome:C_jacchus3.2.1:9:1:124281992:1	8937588	8937721	R	Small nucleolar RNA SNORA5 [Source:RFAM;Acc:RF00392]
ENSCJAG00000036774	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	69724703	69725003	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026575	NOVEL	miRNA	ENSCJAG00000026575	chromosome:C_jacchus3.2.1:17:1:74750902:1	26287933	26288014	R	<no descrition>
ENSCJAG00000032554	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	51337376	51337480	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029591	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	61771279	61771385	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031016	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	71770185	71770281	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029626	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:21:1:50472720:1	48105323	48105426	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027423	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	44189770	44189873	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031882	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:10:1:132174527:1	66193076	66193205	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000029303	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	90262972	90263075	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029596	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	41416510	41416616	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026901	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	121993254	121993357	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033892	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	110424525	110424831	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024365	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	61979597	61979712	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024926	NOVEL	miRNA	ENSCJAG00000024926	chromosome:C_jacchus3.2.1:19:1:49578535:1	37956342	37956422	D	<no descrition>
ENSCJAG00000028067	NOVEL	miRNA	ENSCJAG00000028067	chromosome:C_jacchus3.2.1:5:1:159171411:1	56581666	56581742	D	<no descrition>
ENSCJAG00000027476	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	67932385	67932742	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035107	NOVEL	miRNA	ENSCJAG00000035107	chromosome:C_jacchus3.2.1:7:1:155834243:1	143637362	143637453	R	<no descrition>
ENSCJAG00000027804	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	26785591	26785703	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025152	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	45223081	45223191	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032863	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	45848681	45848788	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029693	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	113222668	113222774	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036515	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286344.1:1:14317:1	1437	1534	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038122	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	82629054	82629161	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024110	NOVEL	miRNA	ENSCJAG00000024110	chromosome:C_jacchus3.2.1:4:1:171630274:1	39400401	39400483	R	<no descrition>
ENSCJAG00000024843	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	11330021	11330127	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031371	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	84478225	84478330	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028770	NOVEL	miRNA	ENSCJAG00000028770	chromosome:C_jacchus3.2.1:4:1:171630274:1	164024857	164024948	D	<no descrition>
ENSCJAG00000024172	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	27994934	27995055	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037459	NOVEL	miRNA	ENSCJAG00000037459	chromosome:C_jacchus3.2.1:2:1:204313951:1	81266370	81266447	D	<no descrition>
ENSCJAG00000037562	NOVEL	miRNA	ENSCJAG00000037562	scaffold:C_jacchus3.2.1:GL286251.1:1:61642:1	21529	21648	D	<no descrition>
ENSCJAG00000028088	NOVEL	miRNA	ENSCJAG00000028088	chromosome:C_jacchus3.2.1:9:1:124281992:1	108976711	108976806	D	<no descrition>
ENSCJAG00000035791	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL286468.1:1:194428:1	145501	145617	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000030228	NOVEL	miRNA	ENSCJAG00000030228	chromosome:C_jacchus3.2.1:14:1:108792865:1	60436354	60436450	R	<no descrition>
ENSCJAG00000038023	NOVEL	miRNA	ENSCJAG00000038023	chromosome:C_jacchus3.2.1:X:1:142054208:1	47949852	47949935	R	<no descrition>
ENSCJAG00000031275	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	80312771	80312826	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000029268	NOVEL	miRNA	ENSCJAG00000029268	chromosome:C_jacchus3.2.1:15:1:98464013:1	88484125	88484190	R	<no descrition>
ENSCJAG00000023749	NOVEL	miRNA	ENSCJAG00000023749	chromosome:C_jacchus3.2.1:5:1:159171411:1	74650757	74650845	D	<no descrition>
ENSCJAG00000028898	NOVEL	miRNA	ENSCJAG00000028898	chromosome:C_jacchus3.2.1:1:1:210400635:1	168848350	168848431	D	<no descrition>
ENSCJAG00000036864	NOVEL	miRNA	ENSCJAG00000036864	chromosome:C_jacchus3.2.1:X:1:142054208:1	9640327	9640418	R	<no descrition>
ENSCJAG00000035526	NOVEL	miRNA	ENSCJAG00000035526	chromosome:C_jacchus3.2.1:12:1:121768101:1	6999681	6999763	R	<no descrition>
ENSCJAG00000030728	NOVEL	miRNA	ENSCJAG00000030728	chromosome:C_jacchus3.2.1:4:1:171630274:1	53426651	53426736	D	<no descrition>
ENSCJAG00000036679	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	209543584	209543880	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027080	NOVEL	snoRNA	SNORD41	chromosome:C_jacchus3.2.1:15:1:98464013:1	86487210	86487278	R	Small nucleolar RNA SNORD41 [Source:RFAM;Acc:RF00588]
ENSCJAG00000036969	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	25625331	25625627	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036057	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	5071863	5072159	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030765	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	32102504	32102608	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024801	NOVEL	snoRNA	SNORA41	chromosome:C_jacchus3.2.1:6:1:158406734:1	122083869	122084002	D	Small nucleolar RNA SNORA41 [Source:RFAM;Acc:RF00403]
ENSCJAG00000033752	NOVEL	snoRNA	SNORA71	chromosome:C_jacchus3.2.1:5:1:159171411:1	32457771	32457904	R	Small nucleolar RNA SNORA71 [Source:RFAM;Acc:RF00056]
ENSCJAG00000030663	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	50992052	50992153	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035610	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288752.1:1:11911:1	10977	11074	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035357	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:14:1:108792865:1	88330776	88330837	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000025140	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	7942038	7942138	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025545	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	60333052	60333153	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024743	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	124070569	124070673	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027271	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	22276942	22277105	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027553	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	48514641	48514759	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026675	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	50545732	50545837	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037599	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	10509897	10510190	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027684	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	44942580	44942681	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030685	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	23891862	23891967	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035508	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	102723140	102723432	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029313	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	152115865	152116005	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034855	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	106876400	106876515	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028662	NOVEL	miRNA	ENSCJAG00000028662	chromosome:C_jacchus3.2.1:22:1:49145316:1	25973572	25973656	R	<no descrition>
ENSCJAG00000024608	NOVEL	snoRNA	SNORD18	chromosome:C_jacchus3.2.1:10:1:132174527:1	8900914	8900985	R	Small nucleolar RNA SNORD18 [Source:RFAM;Acc:RF00093]
ENSCJAG00000030098	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:X:1:142054208:1	47631097	47631185	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000035335	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29561668	29561775	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036148	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	128051058	128051353	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024497	NOVEL	miRNA	ENSCJAG00000024497	chromosome:C_jacchus3.2.1:X:1:142054208:1	122447394	122447494	R	<no descrition>
ENSCJAG00000028040	NOVEL	miRNA	ENSCJAG00000028040	chromosome:C_jacchus3.2.1:4:1:171630274:1	16338582	16338678	D	<no descrition>
ENSCJAG00000025925	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	40378408	40378514	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030721	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	31168371	31168511	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029552	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	7301128	7301231	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031100	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:X:1:142054208:1	61577504	61577699	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000027071	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	101759870	101759976	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025515	NOVEL	miRNA	ENSCJAG00000025515	chromosome:C_jacchus3.2.1:6:1:158406734:1	35770359	35770427	R	<no descrition>
ENSCJAG00000031914	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	197565107	197565223	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032967	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	31222307	31222402	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036827	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	155798198	155798495	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034919	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	62597426	62597539	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027738	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	65219704	65219807	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030775	NOVEL	snoRNA	snoU2_19	chromosome:C_jacchus3.2.1:11:1:130397257:1	44119306	44119385	R	Small nucleolar RNA U2-19 [Source:RFAM;Acc:RF00494]
ENSCJAG00000037438	NOVEL	miRNA	ENSCJAG00000037438	chromosome:C_jacchus3.2.1:1:1:210400635:1	170602670	170602757	R	<no descrition>
ENSCJAG00000037230	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	81668468	81668751	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028113	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	97352495	97352601	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028797	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	29031111	29031210	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026359	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	66679670	66679831	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028351	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	2601909	2602027	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029041	NOVEL	snRNA	U12	chromosome:C_jacchus3.2.1:1:1:210400635:1	202540893	202541042	D	U12 minor spliceosomal RNA [Source:RFAM;Acc:RF00007]
ENSCJAG00000031156	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	88158834	88158931	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036908	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	77951170	77951466	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025556	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	111101291	111101386	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026161	NOVEL	snoRNA	SNORA81	chromosome:C_jacchus3.2.1:15:1:98464013:1	8382889	8383066	D	Small nucleolar RNA SNORA81 [Source:RFAM;Acc:RF01241]
ENSCJAG00000037839	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	123774617	123774918	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037003	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	100337496	100337792	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030884	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	2423636	2423776	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035748	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	51374223	51374519	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037852	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	3077315	3077610	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028087	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	4134390	4134697	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035043	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	113463106	113463201	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023917	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	83666987	83667126	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035845	NOVEL	miRNA	ENSCJAG00000035845	chromosome:C_jacchus3.2.1:13:1:117903854:1	115861302	115861382	D	<no descrition>
ENSCJAG00000033235	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	98635523	98635761	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037132	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	117996638	117996939	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026274	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	32062513	32062618	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028758	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	84533965	84534073	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031335	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	115338081	115338186	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026211	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	62670976	62671084	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000028236	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	106658697	106658799	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027850	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	20531493	20531639	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029972	NOVEL	miRNA	ENSCJAG00000029972	chromosome:C_jacchus3.2.1:3:1:190850796:1	106489308	106489393	D	<no descrition>
ENSCJAG00000025950	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	155634098	155634201	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032589	NOVEL	miRNA	ENSCJAG00000032589	chromosome:C_jacchus3.2.1:6:1:158406734:1	87686046	87686130	R	<no descrition>
ENSCJAG00000032784	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	45712129	45712233	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034407	NOVEL	snoRNA	SNORD22	chromosome:C_jacchus3.2.1:11:1:130397257:1	118549384	118549501	R	Small nucleolar RNA SNORD22 [Source:RFAM;Acc:RF00099]
ENSCJAG00000028048	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	56332865	56332977	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033091	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:5:1:159171411:1	34416031	34416097	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000032320	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	23796396	23796718	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024221	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	34799853	34799954	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033896	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	39465400	39465457	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000029715	NOVEL	miRNA	ENSCJAG00000029715	chromosome:C_jacchus3.2.1:5:1:159171411:1	95230318	95230403	D	<no descrition>
ENSCJAG00000036713	NOVEL	miRNA	ENSCJAG00000036713	chromosome:C_jacchus3.2.1:1:1:210400635:1	197281433	197281506	D	<no descrition>
ENSCJAG00000025304	NOVEL	miRNA	ENSCJAG00000025304	chromosome:C_jacchus3.2.1:2:1:204313951:1	29819346	29819431	R	<no descrition>
ENSCJAG00000036117	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	40756245	40756536	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028361	NOVEL	rRNA	5_8S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	152424899	152425051	R	5.8S ribosomal RNA [Source:RFAM;Acc:RF00002]
ENSCJAG00000028996	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	74708783	74708889	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037802	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	94618305	94618601	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037633	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	143472275	143472571	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036776	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286598.1:1:28884:1	1566	1862	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033379	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	117451237	117451376	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037666	NOVEL	miRNA	ENSCJAG00000037666	chromosome:C_jacchus3.2.1:9:1:124281992:1	81692912	81692992	D	<no descrition>
ENSCJAG00000034003	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	26146288	26146399	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025494	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	172596783	172596921	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031448	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	162290711	162290821	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027371	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	172688993	172689096	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035679	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	111194675	111194971	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029722	NOVEL	miRNA	ENSCJAG00000029722	chromosome:C_jacchus3.2.1:3:1:190850796:1	93576315	93576405	D	<no descrition>
ENSCJAG00000023793	NOVEL	snoRNA	SNORA8	chromosome:C_jacchus3.2.1:11:1:130397257:1	80746450	80746588	D	Small nucleolar RNA SNORA8 [Source:RFAM;Acc:RF00393]
ENSCJAG00000033139	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	33207071	33207177	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032069	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	34577106	34577212	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035944	NOVEL	miRNA	ENSCJAG00000035944	chromosome:C_jacchus3.2.1:1:1:210400635:1	172180001	172180084	R	<no descrition>
ENSCJAG00000029940	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	52333568	52333674	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025270	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	30775852	30775958	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026047	NOVEL	miRNA	ENSCJAG00000026047	chromosome:C_jacchus3.2.1:6:1:158406734:1	129858571	129858633	D	<no descrition>
ENSCJAG00000033857	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	7967716	7967819	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037243	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	28879582	28879878	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033077	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	99496499	99496600	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024723	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	142457710	142457816	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034815	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:21:1:50472720:1	49057655	49057814	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000035916	NOVEL	miRNA	ENSCJAG00000035916	chromosome:C_jacchus3.2.1:2:1:204313951:1	131569830	131569899	D	<no descrition>
ENSCJAG00000028249	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	58434113	58434236	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031464	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	14785426	14785532	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036501	NOVEL	miRNA	ENSCJAG00000036501	chromosome:C_jacchus3.2.1:5:1:159171411:1	152887478	152887579	R	<no descrition>
ENSCJAG00000030168	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	22618251	22618449	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025221	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	81776433	81776550	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029334	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	75202062	75202157	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024748	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:5:1:159171411:1	35735732	35735861	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000025310	NOVEL	snoRNA	SNORA20	chromosome:C_jacchus3.2.1:8:1:128169293:1	7096922	7097053	R	Small nucleolar RNA SNORA20 [Source:RFAM;Acc:RF00401]
ENSCJAG00000023527	NOVEL	miRNA	ENSCJAG00000023527	chromosome:C_jacchus3.2.1:5:1:159171411:1	56594062	56594162	D	<no descrition>
ENSCJAG00000029751	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:18:1:47448759:1	28588765	28588904	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000038040	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	74752	74859	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031611	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	21206861	21206964	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030741	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:6:1:158406734:1	21943832	21943949	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000037099	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	128636464	128636760	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024927	NOVEL	miRNA	ENSCJAG00000024927	chromosome:C_jacchus3.2.1:X:1:142054208:1	84426457	84426543	R	<no descrition>
ENSCJAG00000033477	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	30180407	30180513	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023966	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	72673638	72673740	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029238	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	138936860	138936972	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027840	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	210232695	210232801	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031363	NOVEL	miRNA	ENSCJAG00000031363	chromosome:C_jacchus3.2.1:9:1:124281992:1	32240373	32240437	D	<no descrition>
ENSCJAG00000036319	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL285451.1:1:27884:1	15455	15560	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037698	NOVEL	miRNA	ENSCJAG00000037698	chromosome:C_jacchus3.2.1:6:1:158406734:1	34704021	34704104	D	<no descrition>
ENSCJAG00000025659	NOVEL	miRNA	ENSCJAG00000025659	chromosome:C_jacchus3.2.1:X:1:142054208:1	127705296	127705379	R	<no descrition>
ENSCJAG00000036607	NOVEL	miRNA	ENSCJAG00000036607	chromosome:C_jacchus3.2.1:7:1:155834243:1	56876761	56876827	R	<no descrition>
ENSCJAG00000029279	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	26594536	26594642	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036628	NOVEL	miRNA	ENSCJAG00000036628	chromosome:C_jacchus3.2.1:10:1:132174527:1	126812665	126812784	D	<no descrition>
ENSCJAG00000036925	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	97362062	97362349	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027696	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	144848599	144848700	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027941	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	6520613	6520714	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025130	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	6256272	6256354	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037120	NOVEL	miRNA	ENSCJAG00000037120	chromosome:C_jacchus3.2.1:13:1:117903854:1	34121247	34121329	D	<no descrition>
ENSCJAG00000025736	NOVEL	miRNA	ENSCJAG00000025736	chromosome:C_jacchus3.2.1:14:1:108792865:1	62432457	62432536	D	<no descrition>
ENSCJAG00000032480	NOVEL	miRNA	ENSCJAG00000032480	chromosome:C_jacchus3.2.1:X:1:142054208:1	103077805	103077913	D	<no descrition>
ENSCJAG00000037494	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	96023713	96024007	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029760	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	104221407	104221578	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023545	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	35845541	35845677	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036248	NOVEL	miRNA	ENSCJAG00000036248	chromosome:C_jacchus3.2.1:7:1:155834243:1	67026106	67026194	R	<no descrition>
ENSCJAG00000027910	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:11:1:130397257:1	20360115	20360304	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000030256	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	92583884	92584028	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032217	NOVEL	miRNA	ENSCJAG00000032217	chromosome:C_jacchus3.2.1:X:1:142054208:1	140569622	140569697	R	<no descrition>
ENSCJAG00000032087	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:19:1:49578535:1	42851521	42851649	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000025631	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:3:1:190850796:1	105863336	105863461	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000029203	NOVEL	snoRNA	SNORD89	chromosome:C_jacchus3.2.1:14:1:108792865:1	5660543	5660658	R	Small nucleolar RNA SNORD89 [Source:RFAM;Acc:RF00578]
ENSCJAG00000029644	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	5313432	5313537	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037959	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	6828254	6828551	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035796	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	4406317	4406612	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028821	NOVEL	miRNA	ENSCJAG00000028821	chromosome:C_jacchus3.2.1:15:1:98464013:1	68679380	68679472	R	<no descrition>
ENSCJAG00000024663	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	106027635	106027736	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024797	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	41517687	41517825	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026847	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	36977061	36977153	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024940	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1147724	1147818	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000036025	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	72392019	72392309	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038134	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285846.1:1:11409:1	1927	2036	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034109	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	45681740	45681844	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027630	NOVEL	miRNA	ENSCJAG00000027630	chromosome:C_jacchus3.2.1:7:1:155834243:1	140894218	140894312	R	<no descrition>
ENSCJAG00000028937	NOVEL	miRNA	ENSCJAG00000028937	chromosome:C_jacchus3.2.1:2:1:204313951:1	42319928	42320010	D	<no descrition>
ENSCJAG00000028763	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	47031851	47032143	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035597	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	503022	503318	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027532	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	18195622	18195762	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025241	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	129157397	129157527	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030282	NOVEL	miRNA	ENSCJAG00000030282	chromosome:C_jacchus3.2.1:13:1:117903854:1	58214759	58214845	R	<no descrition>
ENSCJAG00000024986	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:4:1:171630274:1	150385031	150385165	D	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000023616	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	78511304	78511410	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035623	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	67624193	67624486	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028483	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:X:1:142054208:1	47305340	47305474	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000025300	NOVEL	miRNA	ENSCJAG00000025300	chromosome:C_jacchus3.2.1:Y:1:2853901:1	616341	616415	R	<no descrition>
ENSCJAG00000026472	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	153990291	153990397	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029360	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	19765034	19765139	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037977	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	193487615	193487912	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032659	NOVEL	snoRNA	ACA59	chromosome:C_jacchus3.2.1:11:1:130397257:1	12698573	12698724	R	Small nucleolar RNA ACA59 [Source:RFAM;Acc:RF01293]
ENSCJAG00000036928	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	40746628	40746920	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027731	NOVEL	snoRNA	SCARNA21	chromosome:C_jacchus3.2.1:14:1:108792865:1	84295585	84295704	D	Small Cajal body specific RNA 21 [Source:RFAM;Acc:RF00602]
ENSCJAG00000027111	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	158064713	158064819	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035724	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	85578990	85579286	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029143	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	59361436	59361531	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025520	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	20180286	20180426	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035701	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	80304250	80304546	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035803	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	29239636	29239926	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034737	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	67178830	67178933	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036456	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	123455490	123455784	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030709	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	71559433	71559536	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033481	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	18441883	18441983	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026647	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	65392727	65392814	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025720	NOVEL	miRNA	ENSCJAG00000025720	chromosome:C_jacchus3.2.1:7:1:155834243:1	74729867	74729944	R	<no descrition>
ENSCJAG00000024988	NOVEL	miRNA	ENSCJAG00000024988	chromosome:C_jacchus3.2.1:5:1:159171411:1	66463994	66464086	R	<no descrition>
ENSCJAG00000028445	NOVEL	snoRNA	SNORA75	chromosome:C_jacchus3.2.1:6:1:158406734:1	147900408	147900545	R	Small nucleolar RNA SNORA75 [Source:RFAM;Acc:RF00072]
ENSCJAG00000033874	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	202760202	202760307	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029146	NOVEL	miRNA	ENSCJAG00000029146	chromosome:C_jacchus3.2.1:9:1:124281992:1	33417319	33417413	R	<no descrition>
ENSCJAG00000029583	NOVEL	miRNA	ENSCJAG00000029583	chromosome:C_jacchus3.2.1:5:1:159171411:1	68058732	68058849	D	<no descrition>
ENSCJAG00000032326	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	19159335	19159436	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034204	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	23378673	23378775	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030155	NOVEL	miRNA	ENSCJAG00000030155	chromosome:C_jacchus3.2.1:1:1:210400635:1	43314052	43314127	D	<no descrition>
ENSCJAG00000036331	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	116207175	116207470	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037793	NOVEL	miRNA	ENSCJAG00000037793	chromosome:C_jacchus3.2.1:7:1:155834243:1	67567326	67567425	R	<no descrition>
ENSCJAG00000030647	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	186727497	186727609	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034925	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	68907357	68907463	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031077	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	183918144	183918262	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025194	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	68203271	68203379	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024934	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	60243826	60243928	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030946	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:20:1:44557958:1	21559530	21559670	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035693	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	154443198	154443497	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028856	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	29118342	29118456	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032376	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	121507034	121507137	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034300	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	11750294	11750395	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030460	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:5:1:159171411:1	74270114	74270254	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000030895	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	22531099	22531203	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025478	NOVEL	miRNA	ENSCJAG00000025478	chromosome:C_jacchus3.2.1:4:1:171630274:1	23392915	23392997	R	<no descrition>
ENSCJAG00000029806	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	148367603	148367703	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024446	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	83304171	83304266	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025436	NOVEL	miRNA	ENSCJAG00000025436	chromosome:C_jacchus3.2.1:15:1:98464013:1	28038839	28038928	R	<no descrition>
ENSCJAG00000033436	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	98316574	98316833	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030611	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:16:1:96796970:1	32740652	32740784	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000036883	NOVEL	snoRNA	snoU83B	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	6911	7005	R	Small nucleolar RNA U83B [Source:RFAM;Acc:RF00593]
ENSCJAG00000028137	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	52826541	52826644	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023861	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	110011925	110012025	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035983	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	2138388	2138684	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025532	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	152122063	152122155	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028016	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1111843	1111936	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000026292	NOVEL	miRNA	ENSCJAG00000026292	chromosome:C_jacchus3.2.1:7:1:155834243:1	152794526	152794604	D	<no descrition>
ENSCJAG00000028398	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	20195572	20195730	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037683	NOVEL	miRNA	ENSCJAG00000037683	chromosome:C_jacchus3.2.1:7:1:155834243:1	75484291	75484374	D	<no descrition>
ENSCJAG00000035881	NOVEL	miRNA	ENSCJAG00000035881	chromosome:C_jacchus3.2.1:10:1:132174527:1	8427426	8427524	D	<no descrition>
ENSCJAG00000028162	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	55052124	55052237	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026241	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	114708673	114708769	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036207	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	84952	85058	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027905	NOVEL	snoRNA	SNORA1	chromosome:C_jacchus3.2.1:11:1:130397257:1	44108655	44108787	D	Small nucleolar RNA SNORA1 [Source:RFAM;Acc:RF00408]
ENSCJAG00000036976	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	33370786	33371087	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030692	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	88289156	88289264	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026336	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:6:1:158406734:1	95630376	95630501	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000029948	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	151685938	151686056	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031280	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:10:1:132174527:1	113008947	113009078	D	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000033203	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:18:1:47448759:1	44156882	44157149	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036390	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	23721521	23721819	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028019	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	80318644	80318783	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029379	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	64825534	64825635	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028207	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	111597414	111597532	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027058	NOVEL	snoRNA	SCARNA21	chromosome:C_jacchus3.2.1:5:1:159171411:1	73927850	73927988	R	Small Cajal body specific RNA 21 [Source:RFAM;Acc:RF00602]
ENSCJAG00000026385	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	48750732	48750838	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035946	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286460.1:1:253382:1	26450	26745	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024452	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	18605232	18605338	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026068	NOVEL	miRNA	ENSCJAG00000026068	chromosome:C_jacchus3.2.1:X:1:142054208:1	51363449	51363531	R	<no descrition>
ENSCJAG00000032220	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:3:1:190850796:1	32606977	32607108	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000035557	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	45545963	45546258	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025962	NOVEL	miRNA	ENSCJAG00000025962	chromosome:C_jacchus3.2.1:7:1:155834243:1	75283849	75283937	D	<no descrition>
ENSCJAG00000030035	NOVEL	snoRNA	SNORA38	chromosome:C_jacchus3.2.1:13:1:117903854:1	101582134	101582264	D	Small nucleolar RNA SNORA38 [Source:RFAM;Acc:RF00428]
ENSCJAG00000030165	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	23678333	23678434	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036625	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	20999206	20999502	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035060	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	17639000	17639099	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029204	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	368905	369011	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033555	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:3:1:190850796:1	6940308	6940419	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000030164	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	86098025	86098134	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025348	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	113693930	113694036	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035646	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	62943306	62943602	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027559	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	117329775	117329891	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024423	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	60230968	60231078	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026003	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	11234266	11234372	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030415	NOVEL	miRNA	ENSCJAG00000030415	chromosome:C_jacchus3.2.1:5:1:159171411:1	123393678	123393766	R	<no descrition>
ENSCJAG00000028410	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	61620153	61620316	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031910	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	23717040	23717134	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036019	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	65640264	65640559	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036190	NOVEL	miRNA	ENSCJAG00000036190	chromosome:C_jacchus3.2.1:7:1:155834243:1	59936401	59936478	R	<no descrition>
ENSCJAG00000027709	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	39230203	39230304	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032119	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	102203778	102203878	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029786	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	18090432	18090550	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036847	NOVEL	miRNA	ENSCJAG00000036847	chromosome:C_jacchus3.2.1:10:1:132174527:1	95897186	95897288	R	<no descrition>
ENSCJAG00000025297	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:21:1:50472720:1	15436589	15436917	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036221	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	155820472	155820768	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034310	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	82697811	82697917	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036487	NOVEL	miRNA	ENSCJAG00000036487	scaffold:C_jacchus3.2.1:GL285097.1:1:55775:1	1856	1956	D	<no descrition>
ENSCJAG00000027450	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	125808531	125808689	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028293	NOVEL	miRNA	ENSCJAG00000028293	chromosome:C_jacchus3.2.1:6:1:158406734:1	147873305	147873365	D	<no descrition>
ENSCJAG00000037695	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	60055853	60056147	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036727	NOVEL	miRNA	ENSCJAG00000036727	chromosome:C_jacchus3.2.1:4:1:171630274:1	15106059	15106146	D	<no descrition>
ENSCJAG00000030513	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	39564279	39564419	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028418	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	80164585	80164747	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034233	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	30867286	30867397	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032461	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	1351269	1351357	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024369	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	103612464	103612572	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023485	NOVEL	snoRNA	SNORA24	chromosome:C_jacchus3.2.1:9:1:124281992:1	40342601	40342731	D	Small nucleolar RNA SNORA24 [Source:RFAM;Acc:RF00399]
ENSCJAG00000029319	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	77564443	77564583	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036188	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	41791350	41791643	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029843	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	113749125	113749241	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023536	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	50279773	50279884	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032392	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	75803497	75803603	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030867	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	62790480	62790583	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027203	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	37190776	37190882	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035285	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	64472646	64472748	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029269	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	20586528	20586646	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030034	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	53579322	53579498	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035945	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285923.1:1:140007:1	37007	37168	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025857	NOVEL	miRNA	ENSCJAG00000025857	chromosome:C_jacchus3.2.1:9:1:124281992:1	9257943	9258051	D	<no descrition>
ENSCJAG00000036048	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	60672924	60673224	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030151	NOVEL	miRNA	ENSCJAG00000030151	chromosome:C_jacchus3.2.1:X:1:142054208:1	44698732	44698840	R	<no descrition>
ENSCJAG00000025581	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	64039075	64039196	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036669	NOVEL	miRNA	ENSCJAG00000036669	scaffold:C_jacchus3.2.1:GL285699.1:1:34255:1	7823	7926	D	<no descrition>
ENSCJAG00000027051	NOVEL	snoRNA	SNORD60	chromosome:C_jacchus3.2.1:12:1:121768101:1	2445610	2445692	D	Small nucleolar RNA SNORD60 [Source:RFAM;Acc:RF00271]
ENSCJAG00000027926	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	121552037	121552155	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034283	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:8:1:128169293:1	117739228	117739289	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000034543	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	35304264	35304370	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037316	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	47751523	47751819	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036753	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	12251185	12251481	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029035	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	32265631	32265743	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025954	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	2909295	2909398	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036922	NOVEL	miRNA	ENSCJAG00000036922	scaffold:C_jacchus3.2.1:GL286799.1:1:9410:1	3406	3505	R	<no descrition>
ENSCJAG00000029801	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	41426348	41426454	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023947	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	6627173	6627313	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032160	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	41511799	41511902	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024775	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	88930657	88930769	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026340	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	134848996	134849106	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036540	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	148915412	148915708	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026130	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126893633	126893704	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000035448	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:8:1:128169293:1	114641397	114641513	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035115	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	36990770	36990871	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024272	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1351854	1351939	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000029491	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	24437827	24437922	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035578	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	9220326	9220620	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029109	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	58340403	58340509	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032022	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	86654328	86654432	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031805	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	161478810	161478911	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030784	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:21:1:50472720:1	44412928	44413062	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000024258	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:7:1:155834243:1	62180174	62180305	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000026170	NOVEL	snoRNA	SNORD78	chromosome:C_jacchus3.2.1:14:1:108792865:1	34021680	34021744	R	Small nucleolar RNA SNORD78 [Source:RFAM;Acc:RF00592]
ENSCJAG00000024727	NOVEL	miRNA	ENSCJAG00000024727	chromosome:C_jacchus3.2.1:10:1:132174527:1	40253863	40254006	D	<no descrition>
ENSCJAG00000025459	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	19745909	19746004	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025539	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	107879241	107879342	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029472	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	109068194	109068309	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035305	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	69930430	69930536	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025117	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	61170073	61170405	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036388	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	131653884	131654179	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032274	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	775950	776057	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030668	NOVEL	snoRNA	SNORD97	chromosome:C_jacchus3.2.1:11:1:130397257:1	74234145	74234287	R	Small nucleolar RNA SNORD97 [Source:RFAM;Acc:RF01291]
ENSCJAG00000024640	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	47433421	47433533	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027917	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	30121970	30122088	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023581	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1106093	1106187	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000037187	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	54207253	54207550	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028056	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	13346574	13346714	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030106	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	116325943	116326083	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032476	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	74138272	74138374	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030655	NOVEL	miRNA	ENSCJAG00000030655	chromosome:C_jacchus3.2.1:6:1:158406734:1	18350493	18350582	R	<no descrition>
ENSCJAG00000032306	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	81106015	81106115	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032698	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	147405003	147405113	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025416	NOVEL	miRNA	ENSCJAG00000025416	chromosome:C_jacchus3.2.1:10:1:132174527:1	21862277	21862367	R	<no descrition>
ENSCJAG00000023852	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	9184227	9184522	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031305	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:12:1:121768101:1	27042786	27042879	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000036566	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	168411518	168411811	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035994	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	35189363	35189659	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026022	NOVEL	miRNA	ENSCJAG00000026022	chromosome:C_jacchus3.2.1:5:1:159171411:1	65164024	65164118	D	<no descrition>
ENSCJAG00000025884	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126861017	126861088	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000028309	NOVEL	snoRNA	SNORD49	chromosome:C_jacchus3.2.1:5:1:159171411:1	77743175	77743245	R	Small nucleolar RNA SNORD49 [Source:RFAM;Acc:RF00277]
ENSCJAG00000030152	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	82307465	82307571	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033720	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	193293171	193293277	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023613	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	30572643	30572754	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028321	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	99165258	99165472	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037053	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	106272011	106272306	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030667	NOVEL	snoRNA	SNORD99	chromosome:C_jacchus3.2.1:7:1:155834243:1	62772228	62772301	R	Small nucleolar RNA SNORD99 [Source:RFAM;Acc:RF00608]
ENSCJAG00000027435	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	78799250	78799363	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025567	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1109174	1109268	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000026795	NOVEL	miRNA	ENSCJAG00000026795	chromosome:C_jacchus3.2.1:6:1:158406734:1	146083032	146083117	D	<no descrition>
ENSCJAG00000033006	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	20521661	20521759	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033483	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	88083910	88084021	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034950	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	94653698	94653803	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024011	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	99033283	99033383	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028773	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	8077442	8077545	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028155	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:16:1:96796970:1	32832981	32833113	R	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000035677	NOVEL	snoRNA	U3	scaffold:C_jacchus3.2.1:GL287376.1:1:6534:1	161	366	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000031717	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	55316429	55316532	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024993	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	73803377	73803483	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037949	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	13337206	13337503	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029553	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1121199	1121293	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000030681	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	60998842	60998948	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028411	NOVEL	miRNA	ENSCJAG00000028411	chromosome:C_jacchus3.2.1:10:1:132174527:1	41864456	41864549	R	<no descrition>
ENSCJAG00000034678	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	6705071	6705177	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023596	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	63238513	63238652	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028509	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	69685492	69685612	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027898	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	60798473	60798635	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025352	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	92882057	92882181	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037752	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	59418381	59418520	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031212	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	27499201	27499300	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029457	NOVEL	snoRNA	SNORD107	chromosome:C_jacchus3.2.1:6:1:158406734:1	1043751	1043825	D	Small nucleolar RNA SNORD107 [Source:RFAM;Acc:RF01164]
ENSCJAG00000029308	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	149789554	149789660	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032645	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1236874	1236949	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000024118	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	2762643	2762937	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029615	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	112253294	112253400	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024073	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:4:1:171630274:1	18373159	18373284	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000025920	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	88067207	88067308	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030333	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	98055333	98055471	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028195	NOVEL	snoRNA	SNORA29	chromosome:C_jacchus3.2.1:4:1:171630274:1	160860907	160861046	R	Small nucleolar RNA SNORA29 [Source:RFAM;Acc:RF00429]
ENSCJAG00000035129	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	156479716	156479822	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028414	NOVEL	miRNA	ENSCJAG00000028414	chromosome:C_jacchus3.2.1:10:1:132174527:1	126946252	126946336	D	<no descrition>
ENSCJAG00000031600	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	79554806	79554916	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030677	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1262273	1262353	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000029185	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	17144433	17144539	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024018	NOVEL	miRNA	ENSCJAG00000024018	chromosome:C_jacchus3.2.1:12:1:121768101:1	28207454	28207549	R	<no descrition>
ENSCJAG00000030413	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	114334875	114335013	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030650	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	94177056	94177158	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027858	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	19425161	19425324	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027511	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	110828395	110828533	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024493	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	46513733	46513828	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028698	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	95667048	95667154	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024019	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	10574087	10574172	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024373	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	17969148	17969258	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025898	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	906204	906344	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036114	NOVEL	miRNA	ENSCJAG00000036114	chromosome:C_jacchus3.2.1:9:1:124281992:1	53687992	53688088	R	<no descrition>
ENSCJAG00000023532	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	95660610	95660706	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030896	NOVEL	miRNA	ENSCJAG00000030896	chromosome:C_jacchus3.2.1:16:1:96796970:1	18935058	18935165	D	<no descrition>
ENSCJAG00000030743	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:12:1:121768101:1	88609800	88609986	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000024167	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	68991629	68991766	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026902	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	56042531	56042633	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034966	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	18513866	18513968	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037555	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	97871686	97871975	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035905	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	17512360	17512654	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028783	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	154300021	154300137	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025205	NOVEL	miRNA	ENSCJAG00000025205	chromosome:C_jacchus3.2.1:3:1:190850796:1	109066475	109066567	R	<no descrition>
ENSCJAG00000025761	NOVEL	miRNA	ENSCJAG00000025761	chromosome:C_jacchus3.2.1:5:1:159171411:1	39218424	39218505	D	<no descrition>
ENSCJAG00000029409	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	34118135	34118250	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025417	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	117238782	117239071	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027610	NOVEL	miRNA	ENSCJAG00000027610	chromosome:C_jacchus3.2.1:20:1:44557958:1	3228010	3228099	D	<no descrition>
ENSCJAG00000025203	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	9390353	9390459	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037916	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	16212569	16212864	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026207	NOVEL	miRNA	ENSCJAG00000026207	chromosome:C_jacchus3.2.1:6:1:158406734:1	25277811	25277883	D	<no descrition>
ENSCJAG00000024368	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1282241	1282322	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000036224	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	106926484	106926780	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033840	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	46909286	46909395	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030550	NOVEL	miRNA	ENSCJAG00000030550	chromosome:C_jacchus3.2.1:16:1:96796970:1	40039437	40039521	D	<no descrition>
ENSCJAG00000027567	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	33831037	33831143	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024869	NOVEL	miRNA	ENSCJAG00000024869	chromosome:C_jacchus3.2.1:1:1:210400635:1	52985438	52985521	D	<no descrition>
ENSCJAG00000028876	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	91359621	91359728	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036619	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	8854988	8855283	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037883	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	29259191	29259483	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026191	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:5:1:159171411:1	147297347	147297474	R	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000029058	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	123732694	123732812	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036085	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	32353441	32353737	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024058	NOVEL	miRNA	ENSCJAG00000024058	chromosome:C_jacchus3.2.1:2:1:204313951:1	5251762	5251856	D	<no descrition>
ENSCJAG00000026687	NOVEL	miRNA	ENSCJAG00000026687	chromosome:C_jacchus3.2.1:9:1:124281992:1	46657161	46657244	R	<no descrition>
ENSCJAG00000028516	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	62083248	62083366	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037328	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	6829765	6830061	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026458	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	115014143	115014249	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028461	NOVEL	snoRNA	SNORD96	chromosome:C_jacchus3.2.1:2:1:204313951:1	60324830	60324908	R	Small nucleolar RNA SNORD96 family [Source:RFAM;Acc:RF00055]
ENSCJAG00000030717	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	25916756	25916879	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038025	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	13506413	13506708	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025500	NOVEL	miRNA	ENSCJAG00000025500	chromosome:C_jacchus3.2.1:13:1:117903854:1	59143643	59143778	R	<no descrition>
ENSCJAG00000029511	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	25879764	25879870	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025578	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:21:1:50472720:1	1211058	1211192	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025947	NOVEL	miRNA	ENSCJAG00000025947	chromosome:C_jacchus3.2.1:5:1:159171411:1	61836626	61836687	D	<no descrition>
ENSCJAG00000035787	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	28910482	28910588	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029997	NOVEL	miRNA	ENSCJAG00000029997	chromosome:C_jacchus3.2.1:6:1:158406734:1	95104340	95104466	D	<no descrition>
ENSCJAG00000037860	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	16246697	16246998	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034422	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	111117069	111117209	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030468	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	14496763	14496881	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030906	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	166070217	166070407	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000035821	NOVEL	miRNA	ENSCJAG00000035821	scaffold:C_jacchus3.2.1:GL287201.1:1:5839:1	1531	1624	R	<no descrition>
ENSCJAG00000036466	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	51548805	51549086	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031123	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:6:1:158406734:1	15022760	15022894	R	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000034281	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	10640019	10640122	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024918	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	6039376	6039484	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032577	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	73538715	73538818	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025579	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	9036895	9037031	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032914	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	9769302	9769433	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031672	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	67919272	67919391	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029908	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	62359986	62360149	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026622	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	67613348	67613453	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034563	NOVEL	miRNA	ENSCJAG00000034563	chromosome:C_jacchus3.2.1:19:1:49578535:1	48927767	48927906	D	<no descrition>
ENSCJAG00000029232	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	20536006	20536112	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027516	NOVEL	snoRNA	SNORA4	chromosome:C_jacchus3.2.1:6:1:158406734:1	112716072	112716208	D	Small nucleolar RNA SNORA4 [Source:RFAM;Acc:RF00394]
ENSCJAG00000026364	NOVEL	snoRNA	SNORD109A	chromosome:C_jacchus3.2.1:6:1:158406734:1	1091331	1091397	D	Small nucleolar RNA SNORD109A [Source:RFAM;Acc:RF01278]
ENSCJAG00000031620	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:8:1:128169293:1	73384832	73384903	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000023675	NOVEL	miRNA	ENSCJAG00000023675	chromosome:C_jacchus3.2.1:5:1:159171411:1	134112346	134112418	D	<no descrition>
ENSCJAG00000037229	NOVEL	miRNA	ENSCJAG00000037229	chromosome:C_jacchus3.2.1:7:1:155834243:1	120355760	120355853	R	<no descrition>
ENSCJAG00000023794	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	97349878	97349984	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024142	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	33522242	33522356	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035910	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	62826470	62826766	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024405	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	26662974	26663079	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037515	NOVEL	miRNA	ENSCJAG00000037515	scaffold:C_jacchus3.2.1:GL285608.1:1:125556:1	43335	43424	R	<no descrition>
ENSCJAG00000036258	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	14181619	14181713	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026023	NOVEL	miRNA	ENSCJAG00000026023	chromosome:C_jacchus3.2.1:7:1:155834243:1	134715019	134715120	R	<no descrition>
ENSCJAG00000025458	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	18096402	18096520	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029527	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	42360396	42360504	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027866	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	22327077	22327234	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036775	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	32704169	32704463	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026344	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	44564373	44564479	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024362	NOVEL	snoRNA	SNORD72	chromosome:C_jacchus3.2.1:2:1:204313951:1	162608185	162608259	D	Small nucleolar RNA SNORD72 [Source:RFAM;Acc:RF00577]
ENSCJAG00000030939	NOVEL	miRNA	ENSCJAG00000030939	chromosome:C_jacchus3.2.1:17:1:74750902:1	69289757	69289863	R	<no descrition>
ENSCJAG00000033465	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	42584973	42585136	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029666	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	7977332	7977433	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026940	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	60247448	60247560	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025460	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	47057178	47057280	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028498	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	66323953	66324075	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028724	NOVEL	miRNA	ENSCJAG00000028724	chromosome:C_jacchus3.2.1:12:1:121768101:1	121381221	121381328	R	<no descrition>
ENSCJAG00000026038	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	74077814	74077920	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026202	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	149538985	149539091	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026128	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	32404447	32404553	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025819	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	22050606	22050708	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024655	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	96773648	96773755	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027255	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	128645211	128645319	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031337	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	13389373	13389478	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026810	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	122719243	122719362	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027391	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	99130677	99130780	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030257	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	182348238	182348344	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023664	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	17994486	17994581	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036843	NOVEL	miRNA	ENSCJAG00000036843	chromosome:C_jacchus3.2.1:11:1:130397257:1	26694141	26694237	R	<no descrition>
ENSCJAG00000026640	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	18144871	18145002	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033304	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	31355751	31355841	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038046	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	10792707	10793003	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035759	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	80853523	80853819	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036408	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:4:1:171630274:1	21446715	21446776	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035935	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	72744011	72744305	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037657	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:Y:1:2853901:1	1588665	1588957	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029357	NOVEL	miRNA	ENSCJAG00000029357	chromosome:C_jacchus3.2.1:5:1:159171411:1	52810457	52810536	R	<no descrition>
ENSCJAG00000028105	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	144408976	144409139	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036120	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	38298482	38298777	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033717	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	111213534	111213638	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032548	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	189976232	189976339	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038120	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	8144843	8145147	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032108	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	87622158	87622262	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027359	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	94728591	94728695	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036242	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	88163982	88164278	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037773	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	67795076	67795372	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037024	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	59224179	59224475	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024366	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	35723567	35723662	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027579	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	23149306	23149412	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024338	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	51155551	51155687	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031732	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	21572964	21573067	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026573	NOVEL	miRNA	ENSCJAG00000026573	chromosome:C_jacchus3.2.1:X:1:142054208:1	50039631	50039731	R	<no descrition>
ENSCJAG00000027170	NOVEL	miRNA	ENSCJAG00000027170	chromosome:C_jacchus3.2.1:7:1:155834243:1	52016996	52017080	R	<no descrition>
ENSCJAG00000026014	NOVEL	miRNA	ENSCJAG00000026014	chromosome:C_jacchus3.2.1:5:1:159171411:1	130409534	130409624	R	<no descrition>
ENSCJAG00000036052	NOVEL	miRNA	ENSCJAG00000036052	chromosome:C_jacchus3.2.1:2:1:204313951:1	167759766	167759855	D	<no descrition>
ENSCJAG00000037841	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	75439818	75440096	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031965	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	110514303	110514461	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036425	NOVEL	miRNA	ENSCJAG00000036425	chromosome:C_jacchus3.2.1:7:1:155834243:1	75642693	75642769	D	<no descrition>
ENSCJAG00000032367	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	138997452	138997559	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024155	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	118111384	118111502	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025549	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	5514597	5514701	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029988	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126894600	126894674	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000030397	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	35476688	35476799	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028559	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	84232251	84232392	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028917	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	90578071	90578176	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027966	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:8:1:128169293:1	21305557	21305689	D	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000036430	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	165935433	165935730	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038073	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	59371147	59371447	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028114	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	108741235	108741398	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030289	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	24608651	24608753	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025682	NOVEL	miRNA	ENSCJAG00000025682	chromosome:C_jacchus3.2.1:3:1:190850796:1	159554046	159554127	R	<no descrition>
ENSCJAG00000024963	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	74511060	74511161	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026106	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	49498701	49498863	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024080	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	91026143	91026249	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023539	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	21584557	21584643	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028756	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	69991643	69991739	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030848	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	12764064	12764175	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037797	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	32189955	32190253	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023722	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	60924146	60924240	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036243	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	148849459	148849754	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025966	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	94799369	94799477	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037060	NOVEL	miRNA	ENSCJAG00000037060	chromosome:C_jacchus3.2.1:15:1:98464013:1	24718130	24718246	D	<no descrition>
ENSCJAG00000028001	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	106654936	106655081	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036595	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	103030355	103030651	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029728	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	43009154	43009260	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027399	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:10:1:132174527:1	59066972	59067068	R	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000037521	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	428111	428219	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038133	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	35152136	35152430	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025406	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	61282186	61282293	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026912	NOVEL	miRNA	ENSCJAG00000026912	chromosome:C_jacchus3.2.1:9:1:124281992:1	98961254	98961323	R	<no descrition>
ENSCJAG00000031584	NOVEL	snoRNA	SNORA81	chromosome:C_jacchus3.2.1:15:1:98464013:1	5118999	5119176	D	Small nucleolar RNA SNORA81 [Source:RFAM;Acc:RF01241]
ENSCJAG00000031093	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:21:1:50472720:1	10883637	10883777	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029857	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	69250920	69251030	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037450	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	20284208	20284504	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027528	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	74591055	74591167	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033166	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	8756613	8756718	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037364	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	88115417	88115713	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036618	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	146152	146315	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028322	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	31989904	31990228	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037715	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	55764673	55764967	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033640	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	34559274	34559375	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033220	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	79122926	79123032	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037931	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	71829787	71830081	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032241	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	7719267	7719364	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027571	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	4953131	4953237	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035244	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	26069316	26069423	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037255	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	117633661	117633957	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035776	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	51335886	51336178	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037627	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	16554279	16554571	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031924	NOVEL	snoRNA	SNORA74	chromosome:C_jacchus3.2.1:2:1:204313951:1	36144905	36145044	D	Small nucleolar RNA SNORA74 [Source:RFAM;Acc:RF00090]
ENSCJAG00000023935	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	8034971	8035077	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037706	NOVEL	miRNA	ENSCJAG00000037706	scaffold:C_jacchus3.2.1:GL286453.1:1:306671:1	75446	75523	D	<no descrition>
ENSCJAG00000030066	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	26850901	26851007	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030038	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126867858	126867929	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000034278	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	121376771	121376877	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036585	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	37625273	37625568	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023483	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	52262069	52262176	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033219	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	186490008	186490117	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028446	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	27040617	27040726	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038116	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288273.1:1:8484:1	5155	5252	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034344	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:22:1:49145316:1	20255075	20255238	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025136	NOVEL	miRNA	ENSCJAG00000025136	chromosome:C_jacchus3.2.1:16:1:96796970:1	93747147	93747233	R	<no descrition>
ENSCJAG00000034073	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	131549288	131549533	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030286	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	86026091	86026191	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027040	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	124827773	124827880	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027126	NOVEL	snoRNA	SNORA15	chromosome:C_jacchus3.2.1:13:1:117903854:1	86417196	86417330	D	Small nucleolar RNA SNORA15 [Source:RFAM;Acc:RF00398]
ENSCJAG00000026181	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	107353419	107353581	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037518	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:17:1:74750902:1	6167677	6167811	D	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000029723	NOVEL	miRNA	ENSCJAG00000029723	chromosome:C_jacchus3.2.1:13:1:117903854:1	29062429	29062514	R	<no descrition>
ENSCJAG00000037281	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	75245917	75246207	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028303	NOVEL	miRNA	ENSCJAG00000028303	chromosome:C_jacchus3.2.1:9:1:124281992:1	87597900	87597983	D	<no descrition>
ENSCJAG00000032008	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	81020296	81020339	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036448	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285044.1:1:92080:1	46757	47053	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036115	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	106781098	106781394	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031610	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	19451175	19451287	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027715	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1272941	1273022	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000028652	NOVEL	miRNA	ENSCJAG00000028652	chromosome:C_jacchus3.2.1:10:1:132174527:1	126958603	126958685	D	<no descrition>
ENSCJAG00000029699	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	66961336	66961655	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024295	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	26163371	26163468	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032409	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	18588990	18589096	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025333	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	3008340	3008502	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034492	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	79194785	79194882	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032015	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	155749110	155749218	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024194	NOVEL	snoRNA	SNORD56	chromosome:C_jacchus3.2.1:14:1:108792865:1	45102490	45102561	D	Small nucleolar RNA SNORD56 [Source:RFAM;Acc:RF00275]
ENSCJAG00000026454	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	60158206	60158305	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025006	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:2:1:204313951:1	114096449	114096641	R	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000025881	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	102034806	102034906	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026215	NOVEL	miRNA	ENSCJAG00000026215	chromosome:C_jacchus3.2.1:17:1:74750902:1	16921170	16921250	R	<no descrition>
ENSCJAG00000037998	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	171969541	171969835	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034458	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:17:1:74750902:1	49720262	49720323	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000036917	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	6240988	6241284	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033064	NOVEL	miRNA	ENSCJAG00000033064	chromosome:C_jacchus3.2.1:8:1:128169293:1	60089055	60089139	R	<no descrition>
ENSCJAG00000035815	NOVEL	miRNA	ENSCJAG00000035815	scaffold:C_jacchus3.2.1:GL290247.1:1:9480:1	8643	8734	R	<no descrition>
ENSCJAG00000025862	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	11370340	11370442	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031050	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	11206109	11206211	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037991	NOVEL	miRNA	ENSCJAG00000037991	chromosome:C_jacchus3.2.1:4:1:171630274:1	54878026	54878157	D	<no descrition>
ENSCJAG00000037334	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	23459825	23460120	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027432	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	71557358	71557466	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036549	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	47803265	47803561	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025218	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	125204601	125204702	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030128	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	72000953	72001059	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037358	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	25217389	25217683	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025367	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	122998832	122998927	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027865	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:X:1:142054208:1	14094003	14094118	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000023849	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	20477007	20477110	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023499	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	60710526	60710627	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032922	NOVEL	miRNA	ENSCJAG00000032922	chromosome:C_jacchus3.2.1:16:1:96796970:1	53010302	53010420	R	<no descrition>
ENSCJAG00000025069	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	11163076	11163188	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033295	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	144649089	144649201	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034580	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	55349794	55349899	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027987	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	128804543	128804644	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026296	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1295929	1296010	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000025511	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	95624568	95624851	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026994	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	36085546	36085646	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037378	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	10699338	10699634	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025967	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	3292218	3292336	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030826	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	87521717	87521814	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027099	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	150967889	150967992	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025150	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	96794706	96794825	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027188	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	158138653	158138759	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028231	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	99146455	99146561	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027091	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	20832457	20832778	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036441	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	188582687	188582976	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035734	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	227347	227453	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031551	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	18250872	18250976	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027717	NOVEL	miRNA	ENSCJAG00000027717	chromosome:C_jacchus3.2.1:4:1:171630274:1	22701124	22701238	D	<no descrition>
ENSCJAG00000031045	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:6:1:158406734:1	112843369	112843494	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000029196	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	48646131	48646279	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025345	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	14636629	14636735	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029007	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	10526834	10526971	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028530	NOVEL	miRNA	ENSCJAG00000028530	chromosome:C_jacchus3.2.1:2:1:204313951:1	93593386	93593484	D	<no descrition>
ENSCJAG00000030555	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	30631092	30631198	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036884	NOVEL	snoRNA	SNORD44	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	1550904	1550964	R	Small nucleolar RNA SNORD44 [Source:RFAM;Acc:RF00287]
ENSCJAG00000030119	NOVEL	miRNA	ENSCJAG00000030119	chromosome:C_jacchus3.2.1:10:1:132174527:1	91709878	91709956	R	<no descrition>
ENSCJAG00000037265	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	87808927	87809223	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023718	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1180841	1180923	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000034570	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	146964228	146964332	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026928	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126876401	126876476	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000027597	NOVEL	miRNA	ENSCJAG00000027597	chromosome:C_jacchus3.2.1:10:1:132174527:1	126957495	126957575	D	<no descrition>
ENSCJAG00000023881	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	47281602	47281742	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035173	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	26675255	26675357	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036033	NOVEL	miRNA	ENSCJAG00000036033	chromosome:C_jacchus3.2.1:5:1:159171411:1	83258684	83258750	R	<no descrition>
ENSCJAG00000029968	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	50983242	50983382	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025379	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	37011224	37011327	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026549	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	45489641	45489971	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027590	NOVEL	miRNA	ENSCJAG00000027590	chromosome:C_jacchus3.2.1:11:1:130397257:1	63364750	63364844	D	<no descrition>
ENSCJAG00000031306	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	89824607	89824707	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029881	NOVEL	snoRNA	SNORA12	chromosome:C_jacchus3.2.1:14:1:108792865:1	51805874	51806021	R	Small nucleolar RNA SNORA12 [Source:RFAM;Acc:RF00586]
ENSCJAG00000029283	NOVEL	snoRNA	SCARNA11	chromosome:C_jacchus3.2.1:9:1:124281992:1	20785833	20785962	D	Small Cajal body specific RNA 11 [Source:RFAM;Acc:RF00564]
ENSCJAG00000028272	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	74176810	74176883	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031042	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	116669033	116669139	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023502	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	30406420	30406528	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029661	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:13:1:117903854:1	55297605	55297738	R	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000031004	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	91162067	91162164	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037499	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	103346470	103346758	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028975	NOVEL	miRNA	ENSCJAG00000028975	chromosome:C_jacchus3.2.1:21:1:50472720:1	21285943	21286023	D	<no descrition>
ENSCJAG00000027125	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	20396874	20397200	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026816	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	22525079	22525218	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029667	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	144225237	144225342	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035040	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	4388196	4388314	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023978	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	1258265	1258368	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036380	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	63357084	63357379	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029249	NOVEL	miRNA	ENSCJAG00000029249	chromosome:C_jacchus3.2.1:X:1:142054208:1	138903582	138903666	R	<no descrition>
ENSCJAG00000034223	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:X:1:142054208:1	100025567	100025638	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000024903	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	73481131	73481249	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023869	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	49496058	49496166	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036043	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	18304942	18305237	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026249	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	52295215	52295321	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032520	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	82270903	82271011	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024812	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:10:1:132174527:1	55244546	55244749	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000025414	NOVEL	snoRNA	SNORD59	chromosome:C_jacchus3.2.1:1:1:210400635:1	3519748	3519822	D	Small nucleolar RNA SNORD59 [Source:RFAM;Acc:RF00273]
ENSCJAG00000036058	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	41748068	41748363	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026046	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	126453016	126453117	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030998	NOVEL	miRNA	ENSCJAG00000030998	chromosome:C_jacchus3.2.1:15:1:98464013:1	3681497	3681617	D	<no descrition>
ENSCJAG00000032775	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:1:1:210400635:1	21187697	21187817	R	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000030202	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	16362119	16362237	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036470	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	15231206	15231499	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029230	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	86650572	86650673	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025521	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	65722326	65722427	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032957	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	26392105	26392222	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031477	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	24656601	24656707	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027875	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	16217978	16218075	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033829	NOVEL	snoRNA	SNORA68	chromosome:C_jacchus3.2.1:1:1:210400635:1	42248121	42248198	D	Small nucleolar RNA SNORA68 [Source:RFAM;Acc:RF00263]
ENSCJAG00000032902	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	117112391	117112683	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026512	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	11802233	11802339	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024867	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	1623444	1623554	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029032	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	72976112	72976220	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029125	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	171158195	171158291	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029517	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	87528890	87528996	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036825	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	44928452	44928748	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034139	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:14:1:108792865:1	3034387	3034448	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000029121	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	117234865	117234965	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035089	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	84541239	84541347	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036853	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	137625272	137625568	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026382	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	32988403	32988521	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027974	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	105978906	105979007	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033257	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	39044323	39044431	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038099	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	35123874	35124169	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029536	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	132491992	132492098	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028424	NOVEL	snoRNA	SNORD88	chromosome:C_jacchus3.2.1:9:1:124281992:1	8557985	8558063	R	Small nucleolar RNA SNORD88 [Source:RFAM;Acc:RF00604]
ENSCJAG00000026192	NOVEL	miRNA	ENSCJAG00000026192	chromosome:C_jacchus3.2.1:2:1:204313951:1	147812233	147812329	D	<no descrition>
ENSCJAG00000034381	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	111116282	111116422	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036641	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	26355007	26355300	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024610	NOVEL	miRNA	ENSCJAG00000024610	chromosome:C_jacchus3.2.1:22:1:49145316:1	43320700	43320767	D	<no descrition>
ENSCJAG00000028596	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	35405414	35405577	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036933	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	96685608	96685905	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031127	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	32069204	32069299	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028654	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	84825942	84826042	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037608	NOVEL	miRNA	ENSCJAG00000037608	chromosome:C_jacchus3.2.1:9:1:124281992:1	88051153	88051218	R	<no descrition>
ENSCJAG00000034116	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	13018063	13018166	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030545	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	94005279	94005385	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034863	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	9545345	9545440	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028433	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	39356035	39356135	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034765	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:1:1:210400635:1	84860022	84860092	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000037178	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	63844391	63844687	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024204	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	118139896	118139997	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025364	NOVEL	miRNA	ENSCJAG00000025364	chromosome:C_jacchus3.2.1:8:1:128169293:1	15339627	15339746	R	<no descrition>
ENSCJAG00000036606	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	80049946	80050242	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036991	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	64184572	64184866	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033959	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	18796382	18796475	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030036	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	20991401	20991507	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026011	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	68072898	68072993	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033681	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	114117749	114117843	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037108	NOVEL	snoRNA	SNORA43	scaffold:C_jacchus3.2.1:GL285185.1:1:51406:1	12313	12450	D	Small nucleolar RNA SNORA43 [Source:RFAM;Acc:RF00416]
ENSCJAG00000032052	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	133623352	133623637	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028893	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	106586899	106587005	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035649	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	16829227	16829522	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032814	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	63414197	63414269	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034766	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	23728779	23728882	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037504	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	76805070	76805365	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023703	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:13:1:117903854:1	94915516	94915706	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000034605	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	31985659	31985756	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024977	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16905671	16905781	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023466	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	134752856	134752962	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031214	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	21875324	21875433	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027719	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	153137700	153137807	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029764	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:14:1:108792865:1	31345289	31345423	R	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000030018	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	42342309	42342415	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036913	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	47781486	47781761	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023916	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	199381372	199381668	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029441	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	32143433	32143539	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030265	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:1:1:210400635:1	14026033	14026167	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000036157	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	78075235	78075536	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032190	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	68581566	68581672	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026559	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	140437930	140438031	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027082	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	17745237	17745343	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025754	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	76550787	76550893	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037542	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	109622821	109623122	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036101	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	42571491	42571786	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028007	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	778470	778564	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029838	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	22178247	22178359	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025009	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	30909685	30909790	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036169	NOVEL	miRNA	ENSCJAG00000036169	chromosome:C_jacchus3.2.1:1:1:210400635:1	190836042	190836130	R	<no descrition>
ENSCJAG00000035964	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	22355794	22356090	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036257	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	8050808	8051104	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031738	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	65814612	65814715	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030599	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	7252834	7252940	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027733	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	5843796	5843935	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029492	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:21:1:50472720:1	35547486	35547625	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025344	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	129893222	129893330	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030053	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	141947418	141947523	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027422	NOVEL	miRNA	ENSCJAG00000027422	chromosome:C_jacchus3.2.1:7:1:155834243:1	2122041	2122169	R	<no descrition>
ENSCJAG00000028258	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	37022987	37023088	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030600	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	157819898	157820010	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028725	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	64613401	64613563	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032485	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	22343123	22343251	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037952	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	11234714	11235007	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028690	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:3:1:190850796:1	43721876	43721937	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000034764	NOVEL	snoRNA	snoMe28S-Am2634	chromosome:C_jacchus3.2.1:13:1:117903854:1	84900282	84900355	D	Small nucleolar RNA Me28S-Am2634 [Source:RFAM;Acc:RF00537]
ENSCJAG00000025026	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	8896494	8896597	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023763	NOVEL	miRNA	ENSCJAG00000023763	chromosome:C_jacchus3.2.1:5:1:159171411:1	83863570	83863684	R	<no descrition>
ENSCJAG00000027544	NOVEL	miRNA	ENSCJAG00000027544	chromosome:C_jacchus3.2.1:7:1:155834243:1	55013909	55014009	R	<no descrition>
ENSCJAG00000033291	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	151755255	151755358	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026865	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:8:1:128169293:1	29451942	29452026	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000036128	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	118246	118366	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028320	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	59501694	59501796	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037082	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	41677116	41677412	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036027	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	59414586	59414880	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023575	NOVEL	snoRNA	SNORA16	chromosome:C_jacchus3.2.1:5:1:159171411:1	145552568	145552694	R	Small nucleolar RNA SNORA16B/SNORA16A family [Source:RFAM;Acc:RF00190]
ENSCJAG00000037232	NOVEL	miRNA	ENSCJAG00000037232	chromosome:C_jacchus3.2.1:14:1:108792865:1	13929697	13929795	R	<no descrition>
ENSCJAG00000028617	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	54048086	54048187	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025671	NOVEL	miRNA	ENSCJAG00000025671	chromosome:C_jacchus3.2.1:X:1:142054208:1	65949522	65949593	R	<no descrition>
ENSCJAG00000029305	NOVEL	miRNA	ENSCJAG00000029305	chromosome:C_jacchus3.2.1:4:1:171630274:1	34009790	34009898	D	<no descrition>
ENSCJAG00000026657	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	28761725	28761849	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032263	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	111896712	111896809	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033861	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	18285472	18285535	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030462	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16208888	16208993	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023714	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	83844182	83844288	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036512	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	8690145	8690440	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030083	NOVEL	snoRNA	SNORA84	chromosome:C_jacchus3.2.1:1:1:210400635:1	74169048	74169180	R	Small nucleolar RNA SNORA84 [Source:RFAM;Acc:RF01229]
ENSCJAG00000036946	NOVEL	snoRNA	SNORD39	chromosome:C_jacchus3.2.1:7:1:155834243:1	79541338	79541417	D	Small nucleolar RNA SNORD55/SNORD39 [Source:RFAM;Acc:RF00157]
ENSCJAG00000031402	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	55974819	55974925	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034331	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:2:1:204313951:1	29265949	29266059	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000034318	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	174712208	174712314	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035261	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	106811247	106811349	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036875	NOVEL	miRNA	ENSCJAG00000036875	chromosome:C_jacchus3.2.1:13:1:117903854:1	75363110	75363190	D	<no descrition>
ENSCJAG00000026717	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	21029970	21030109	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034614	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	2817608	2817710	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023955	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	121513972	121514075	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031270	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	93627752	93627858	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038093	NOVEL	misc_RNA	7SK	scaffold:C_jacchus3.2.1:GL286606.1:1:6330:1	5491	5793	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030117	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	90796891	90796993	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029290	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	111523293	111523399	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031991	NOVEL	miRNA	ENSCJAG00000031991	chromosome:C_jacchus3.2.1:X:1:142054208:1	134318232	134318360	R	<no descrition>
ENSCJAG00000031922	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:20:1:44557958:1	30184188	30184297	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029317	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	58562612	58562775	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029342	NOVEL	snoRNA	SNORA62	chromosome:C_jacchus3.2.1:11:1:130397257:1	68102762	68102914	D	Small nucleolar RNA SNORA62/SNORA6 family [Source:RFAM;Acc:RF00091]
ENSCJAG00000026129	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	11488230	11488336	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037172	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	87783632	87783928	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028985	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	36702291	36702397	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032021	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	10558533	10558628	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025082	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	40450038	40450144	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025064	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	96067123	96067229	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025256	NOVEL	miRNA	ENSCJAG00000025256	chromosome:C_jacchus3.2.1:7:1:155834243:1	61002603	61002698	R	<no descrition>
ENSCJAG00000036732	NOVEL	miRNA	ENSCJAG00000036732	chromosome:C_jacchus3.2.1:5:1:159171411:1	55247883	55247970	R	<no descrition>
ENSCJAG00000035537	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	42981440	42981736	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024635	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1292311	1292392	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000037141	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	19865552	19865848	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026606	NOVEL	snoRNA	SCARNA8	chromosome:C_jacchus3.2.1:1:1:210400635:1	121504633	121504767	D	Small Cajal body specific RNA 8 [Source:RFAM;Acc:RF00286]
ENSCJAG00000030269	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	25367098	25367427	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029858	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	26860944	26861050	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029575	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:15:1:98464013:1	5120257	5120387	D	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000026938	NOVEL	snoRNA	SNORD50	chromosome:C_jacchus3.2.1:3:1:190850796:1	118237954	118238025	R	Small nucleolar RNA SNORD50 [Source:RFAM;Acc:RF00278]
ENSCJAG00000037083	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	32779300	32779596	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027611	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	40871590	40871697	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032310	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	68423336	68423454	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034522	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	155824637	155824738	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027891	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	151071723	151071878	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025860	NOVEL	miRNA	ENSCJAG00000025860	chromosome:C_jacchus3.2.1:10:1:132174527:1	126966922	126967018	D	<no descrition>
ENSCJAG00000032281	NOVEL	miRNA	ENSCJAG00000032281	chromosome:C_jacchus3.2.1:2:1:204313951:1	195301826	195301895	D	<no descrition>
ENSCJAG00000035668	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	44092	44388	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028640	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	10156762	10156863	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024651	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	10964126	10964234	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031634	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	28012734	28012768	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028829	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	83139675	83139780	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035835	NOVEL	miRNA	ENSCJAG00000035835	chromosome:C_jacchus3.2.1:17:1:74750902:1	40118339	40118560	D	<no descrition>
ENSCJAG00000036305	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	5442051	5442345	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029897	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:8:1:128169293:1	12526669	12526801	R	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000037746	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	7852109	7852406	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030776	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	42967623	42967758	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037813	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	138044460	138044755	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025698	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	44886250	44886390	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025543	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	94011204	94011310	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025263	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	95080101	95080202	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036253	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	21480349	21480642	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036615	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	9182118	9182414	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030930	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	10823783	10823946	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037362	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	12337889	12338185	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037730	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	12448979	12449272	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028131	NOVEL	snoRNA	SNORA5	chromosome:C_jacchus3.2.1:15:1:98464013:1	73213589	73213719	R	Small nucleolar RNA SNORA5 [Source:RFAM;Acc:RF00392]
ENSCJAG00000036179	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285162.1:1:36147:1	168	274	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029982	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:19:1:49578535:1	4421746	4421846	R	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000025239	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	23854580	23854771	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000030110	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	31226296	31226414	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030634	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	79874670	79874754	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033942	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	82377245	82377351	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036384	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	93942593	93942889	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031631	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	59335357	59335418	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000023792	NOVEL	miRNA	ENSCJAG00000023792	chromosome:C_jacchus3.2.1:9:1:124281992:1	87669518	87669617	D	<no descrition>
ENSCJAG00000033217	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	4107310	4107593	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025408	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	116754186	116754326	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033812	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	129546082	129546197	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000030275	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	20131064	20131170	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033814	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	135187848	135187960	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023704	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	60299144	60299247	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036567	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	8162597	8162893	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028098	NOVEL	snoRNA	SNORA30	chromosome:C_jacchus3.2.1:1:1:210400635:1	122831738	122831868	D	Small nucleolar RNA SNORA30/SNORA37 family [Source:RFAM;Acc:RF00415]
ENSCJAG00000026738	NOVEL	miRNA	ENSCJAG00000026738	chromosome:C_jacchus3.2.1:5:1:159171411:1	5053012	5053064	R	<no descrition>
ENSCJAG00000036782	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL285051.1:1:9327:1	3314	3424	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033265	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	462766	462867	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030261	NOVEL	miRNA	ENSCJAG00000030261	chromosome:C_jacchus3.2.1:11:1:130397257:1	66207556	66207623	D	<no descrition>
ENSCJAG00000030575	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	61872363	61872496	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035598	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	4265080	4265376	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032092	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	44719691	44719797	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032026	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	34976699	34976801	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027060	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	138260318	138260424	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035772	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	27457279	27457573	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037503	NOVEL	miRNA	ENSCJAG00000037503	chromosome:C_jacchus3.2.1:9:1:124281992:1	44358113	44358206	D	<no descrition>
ENSCJAG00000033451	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	18540761	18540869	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023494	NOVEL	miRNA	ENSCJAG00000023494	chromosome:C_jacchus3.2.1:13:1:117903854:1	47972964	47973079	R	<no descrition>
ENSCJAG00000026332	NOVEL	snoRNA	SNORA38	chromosome:C_jacchus3.2.1:9:1:124281992:1	109644575	109644705	R	Small nucleolar RNA SNORA38 [Source:RFAM;Acc:RF00428]
ENSCJAG00000026694	NOVEL	miRNA	ENSCJAG00000026694	chromosome:C_jacchus3.2.1:12:1:121768101:1	71298796	71298872	R	<no descrition>
ENSCJAG00000031504	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	106725915	106726023	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023893	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	19257565	19257682	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037425	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	136336206	136336502	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023798	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	8030096	8030236	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032084	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	184586693	184586797	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029450	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	39536131	39536242	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031355	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:9:1:124281992:1	71357028	71357070	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000024474	NOVEL	miRNA	ENSCJAG00000024474	chromosome:C_jacchus3.2.1:11:1:130397257:1	19874236	19874308	R	<no descrition>
ENSCJAG00000031039	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	26174632	26174762	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036602	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	85879219	85879516	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024441	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	31409158	31409264	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026199	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:11:1:130397257:1	20338714	20338904	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000030588	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	118458945	118459051	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026251	NOVEL	miRNA	ENSCJAG00000026251	chromosome:C_jacchus3.2.1:1:1:210400635:1	130866537	130866617	R	<no descrition>
ENSCJAG00000024181	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	4658467	4658607	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023486	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	12661849	12661951	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027008	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	158880946	158881062	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037754	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	61517924	61518220	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036231	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	82585934	82586230	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024033	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	7064206	7064321	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028473	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1314623	1314704	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000033878	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	92869870	92869968	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023597	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	113640532	113640632	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035283	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:16:1:96796970:1	51019023	51019082	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000027685	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	77482267	77482368	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033016	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	23112208	23112310	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030716	NOVEL	miRNA	ENSCJAG00000030716	chromosome:C_jacchus3.2.1:5:1:159171411:1	118163191	118163298	D	<no descrition>
ENSCJAG00000024744	NOVEL	miRNA	ENSCJAG00000024744	chromosome:C_jacchus3.2.1:2:1:204313951:1	152554231	152554320	D	<no descrition>
ENSCJAG00000030360	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	44496952	44497261	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036737	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	82928661	82928956	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029219	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	152691152	152691250	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027076	NOVEL	miRNA	ENSCJAG00000027076	chromosome:C_jacchus3.2.1:X:1:142054208:1	6849228	6849319	D	<no descrition>
ENSCJAG00000024960	NOVEL	miRNA	ENSCJAG00000024960	chromosome:C_jacchus3.2.1:9:1:124281992:1	83052653	83052737	R	<no descrition>
ENSCJAG00000023774	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	113087198	113087361	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027775	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:18:1:47448759:1	9830398	9830553	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030088	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	7465496	7465605	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035222	NOVEL	miRNA	ENSCJAG00000035222	chromosome:C_jacchus3.2.1:11:1:130397257:1	98166857	98166928	D	<no descrition>
ENSCJAG00000037396	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	1342098	1342397	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023841	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	26817420	26817528	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035515	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	72337760	72338056	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037834	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	20221209	20221500	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023868	NOVEL	snoRNA	snoZ39	chromosome:C_jacchus3.2.1:2:1:204313951:1	121502202	121502264	R	Small nucleolar RNA Z39 [Source:RFAM;Acc:RF00341]
ENSCJAG00000026138	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	19166400	19166506	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028222	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	53893326	53893432	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025164	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	80666514	80666835	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028055	NOVEL	miRNA	ENSCJAG00000028055	chromosome:C_jacchus3.2.1:3:1:190850796:1	149887535	149887598	D	<no descrition>
ENSCJAG00000030454	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	4025682	4025845	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024882	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1131119	1131208	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000031666	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	108511623	108511726	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024098	NOVEL	snoRNA	SCARNA23	chromosome:C_jacchus3.2.1:3:1:190850796:1	188927970	188928094	R	Small Cajal body specific RNA 23 [Source:RFAM;Acc:RF00427]
ENSCJAG00000029847	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	43365227	43365328	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026104	NOVEL	miRNA	ENSCJAG00000026104	chromosome:C_jacchus3.2.1:8:1:128169293:1	55962498	55962573	D	<no descrition>
ENSCJAG00000033088	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	5250599	5250705	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029888	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	122671385	122671525	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024995	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126885692	126885766	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000036233	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL285708.1:1:17859:1	14687	14801	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036950	NOVEL	miRNA	ENSCJAG00000036950	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	614744	614826	R	<no descrition>
ENSCJAG00000028539	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	33923955	33924061	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036754	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	37058440	37058734	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028547	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	22488356	22488459	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024055	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	41018589	41018729	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027565	NOVEL	snoRNA	SNORD29	chromosome:C_jacchus3.2.1:X:1:142054208:1	111461136	111461200	D	Small nucleolar RNA SNORD29 [Source:RFAM;Acc:RF00070]
ENSCJAG00000034652	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:10:1:132174527:1	17789260	17789321	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000031126	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	120996206	120996445	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033897	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:4:1:171630274:1	87803662	87803832	R	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000025923	NOVEL	miRNA	ENSCJAG00000025923	chromosome:C_jacchus3.2.1:10:1:132174527:1	126978299	126978400	D	<no descrition>
ENSCJAG00000028722	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	146680641	146680739	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034976	NOVEL	snoRNA	SNORD46	chromosome:C_jacchus3.2.1:8:1:128169293:1	113430776	113430879	R	Small nucleolar RNA SNORD46 [Source:RFAM;Acc:RF00218]
ENSCJAG00000035342	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:X:1:142054208:1	122685911	122686056	R	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000038043	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	69589166	69589460	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033002	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:20:1:44557958:1	4184242	4184306	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000024745	NOVEL	snoRNA	SNORA52	chromosome:C_jacchus3.2.1:12:1:121768101:1	84497433	84497566	D	Small nucleolar RNA SNORA52 [Source:RFAM;Acc:RF00419]
ENSCJAG00000035778	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	27420984	27421279	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027344	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	43965707	43965812	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032952	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	28353970	28354070	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034059	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:1:1:210400635:1	128738769	128738893	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000029124	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	8683405	8683511	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030347	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	94305267	94305370	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037495	NOVEL	miRNA	ENSCJAG00000037495	chromosome:C_jacchus3.2.1:8:1:128169293:1	83462682	83462792	D	<no descrition>
ENSCJAG00000028742	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	43023488	43023594	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024526	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	35572773	35572866	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033986	NOVEL	miRNA	ENSCJAG00000033986	chromosome:C_jacchus3.2.1:22:1:49145316:1	39139302	39139381	D	<no descrition>
ENSCJAG00000028500	NOVEL	miRNA	ENSCJAG00000028500	chromosome:C_jacchus3.2.1:14:1:108792865:1	51389332	51389388	D	<no descrition>
ENSCJAG00000029376	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	24612030	24612125	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037523	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	45663277	45663572	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030904	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	80970126	80970233	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035837	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	265186	265292	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028543	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	115894804	115894916	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036097	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	16588832	16589128	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023779	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126837912	126837983	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000031933	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	29206750	29206859	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024279	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	41062092	41062211	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026534	NOVEL	miRNA	ENSCJAG00000026534	chromosome:C_jacchus3.2.1:11:1:130397257:1	51865	51956	D	<no descrition>
ENSCJAG00000031636	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	110527432	110527535	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033022	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:3:1:190850796:1	142167512	142167579	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000033872	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	67802768	67802874	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035519	NOVEL	miRNA	ENSCJAG00000035519	chromosome:C_jacchus3.2.1:15:1:98464013:1	5801851	5801942	D	<no descrition>
ENSCJAG00000026967	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	17994943	17995021	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029828	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	6917182	6917446	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026441	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:13:1:117903854:1	49383708	49383921	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025576	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	10873339	10873434	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026905	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	14482283	14482385	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025727	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	127847298	127847402	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032732	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	134718289	134718427	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024719	NOVEL	miRNA	ENSCJAG00000024719	chromosome:C_jacchus3.2.1:3:1:190850796:1	80984554	80984621	D	<no descrition>
ENSCJAG00000026469	NOVEL	miRNA	ENSCJAG00000026469	chromosome:C_jacchus3.2.1:2:1:204313951:1	8045276	8045375	D	<no descrition>
ENSCJAG00000036870	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	25173822	25174118	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037055	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	34785214	34785510	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030467	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:19:1:49578535:1	15628437	15628581	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029072	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	130861889	130862005	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000024045	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	35164822	35164923	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033898	NOVEL	miRNA	ENSCJAG00000033898	chromosome:C_jacchus3.2.1:7:1:155834243:1	146694436	146694503	D	<no descrition>
ENSCJAG00000034911	NOVEL	miRNA	ENSCJAG00000034911	chromosome:C_jacchus3.2.1:17:1:74750902:1	47490590	47490664	R	<no descrition>
ENSCJAG00000024902	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	69022956	69023050	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027577	NOVEL	miRNA	ENSCJAG00000027577	chromosome:C_jacchus3.2.1:21:1:50472720:1	21335535	21335623	D	<no descrition>
ENSCJAG00000017413	NOVEL	miRNA	ENSCJAG00000017413	chromosome:C_jacchus3.2.1:22:1:49145316:1	3110005	3110086	D	<no descrition>
ENSCJAG00000033157	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	88924999	88925100	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030560	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	72463343	72463444	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027639	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:14:1:108792865:1	98487323	98487441	D	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000026754	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	17481055	17481157	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037932	NOVEL	miRNA	ENSCJAG00000037932	chromosome:C_jacchus3.2.1:7:1:155834243:1	53021869	53021951	R	<no descrition>
ENSCJAG00000024630	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	152681983	152682081	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037206	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	55496257	55496553	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031253	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	61064180	61064286	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023746	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:18:1:47448759:1	28274473	28274593	D	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000027475	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	37788943	37789103	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029792	NOVEL	snoRNA	SNORD29	chromosome:C_jacchus3.2.1:2:1:204313951:1	178675965	178676031	R	Small nucleolar RNA SNORD29 [Source:RFAM;Acc:RF00070]
ENSCJAG00000033057	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	26338684	26338790	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032510	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	32015882	32015982	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035854	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	149152085	149152381	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029990	NOVEL	snoRNA	SNORD51	chromosome:C_jacchus3.2.1:10:1:132174527:1	129754126	129754200	R	Small nucleolar RNA SNORD51 [Source:RFAM;Acc:RF00280]
ENSCJAG00000029911	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	51294481	51294587	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037735	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	7068135	7068430	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033031	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	4976097	4976214	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025717	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	12793340	12793445	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023727	NOVEL	miRNA	ENSCJAG00000023727	chromosome:C_jacchus3.2.1:10:1:132174527:1	126942268	126942355	D	<no descrition>
ENSCJAG00000028568	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	87286708	87286813	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024626	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	35327349	35327451	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034474	NOVEL	snoRNA	SNORD24	chromosome:C_jacchus3.2.1:3:1:190850796:1	117366005	117366077	D	Small nucleolar RNA SNORD24 [Source:RFAM;Acc:RF00069]
ENSCJAG00000023781	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	13909148	13909260	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025071	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	150053872	150054182	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037119	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	128743300	128743592	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036569	NOVEL	miRNA	ENSCJAG00000036569	chromosome:C_jacchus3.2.1:X:1:142054208:1	49143526	49143641	R	<no descrition>
ENSCJAG00000037224	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	71068011	71068307	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026348	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	1336679	1336785	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036666	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	18680393	18680689	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031502	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	125060245	125060355	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023635	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	51282019	51282123	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037511	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	136770713	136771000	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029506	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	164250641	164250759	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024559	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	51704245	51704352	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028967	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	79779054	79779171	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030865	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	27135728	27136005	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033202	NOVEL	miRNA	ENSCJAG00000033202	chromosome:C_jacchus3.2.1:1:1:210400635:1	14505574	14505670	D	<no descrition>
ENSCJAG00000027321	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	96244132	96244229	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026778	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	131832489	131832585	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027055	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	90277739	90277840	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038092	NOVEL	miRNA	ENSCJAG00000038092	chromosome:C_jacchus3.2.1:14:1:108792865:1	58331933	58332063	D	<no descrition>
ENSCJAG00000037333	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	22088600	22088696	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035979	NOVEL	miRNA	ENSCJAG00000035979	chromosome:C_jacchus3.2.1:5:1:159171411:1	150557257	150557348	R	<no descrition>
ENSCJAG00000034637	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	123652069	123652188	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027079	NOVEL	miRNA	ENSCJAG00000027079	chromosome:C_jacchus3.2.1:13:1:117903854:1	61722431	61722496	D	<no descrition>
ENSCJAG00000025030	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	10440278	10440378	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026389	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1115446	1115540	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000037216	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	88080918	88081012	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037436	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	52250749	52251045	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033063	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	750896	751001	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023510	NOVEL	snoRNA	SNORD14	chromosome:C_jacchus3.2.1:11:1:130397257:1	80632405	80632494	R	Small nucleolar RNA SNORD14 [Source:RFAM;Acc:RF00016]
ENSCJAG00000037914	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	26923903	26924199	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025764	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	154217141	154217247	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036683	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288646.1:1:14237:1	7625	7731	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030410	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	55230084	55230195	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028765	NOVEL	snoRNA	SNORD100	chromosome:C_jacchus3.2.1:4:1:171630274:1	133200414	133200489	D	Small nucleolar RNA SNORD100 [Source:RFAM;Acc:RF00609]
ENSCJAG00000024127	NOVEL	miRNA	ENSCJAG00000024127	chromosome:C_jacchus3.2.1:6:1:158406734:1	84312350	84312431	R	<no descrition>
ENSCJAG00000024419	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:4:1:171630274:1	30726014	30726227	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000036941	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	87099916	87100212	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028372	NOVEL	snoRNA	SCARNA1	chromosome:C_jacchus3.2.1:10:1:132174527:1	100732208	100732373	R	Small Cajal body specific RNA 1 [Source:RFAM;Acc:RF00553]
ENSCJAG00000035180	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	31456292	31456386	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027090	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	32387654	32387772	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028419	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	57607317	57607449	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027457	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	39632265	39632371	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036079	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	96050037	96050333	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036635	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	181118566	181118862	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037011	NOVEL	miRNA	ENSCJAG00000037011	chromosome:C_jacchus3.2.1:20:1:44557958:1	10184447	10184549	D	<no descrition>
ENSCJAG00000029208	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	33680054	33680160	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035487	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	90576334	90576440	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024951	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	107922740	107922845	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036016	NOVEL	misc_RNA	7SK	scaffold:C_jacchus3.2.1:GL285855.1:1:127925:1	13843	14159	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036755	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286324.1:1:16136:1	8837	8938	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027341	NOVEL	miRNA	ENSCJAG00000027341	chromosome:C_jacchus3.2.1:5:1:159171411:1	64019117	64019202	R	<no descrition>
ENSCJAG00000036815	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	42027140	42027438	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037527	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	21828472	21828765	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024063	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	64518465	64518572	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037588	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	107426933	107427229	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036959	NOVEL	snoRNA	snoZ178	scaffold:C_jacchus3.2.1:GL286885.1:1:8053:1	7364	7525	D	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000032415	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	1564562	1564665	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030973	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	80467420	80467526	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027737	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	2595718	2595820	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023846	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:7:1:155834243:1	132488621	132488758	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000029748	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	58436728	58436846	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028058	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	95404756	95404876	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037648	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	69490062	69490373	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036096	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	48900743	48901039	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027327	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	97143608	97143711	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036113	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	9541609	9541904	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030223	NOVEL	miRNA	ENSCJAG00000030223	chromosome:C_jacchus3.2.1:5:1:159171411:1	13275497	13275591	D	<no descrition>
ENSCJAG00000034154	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	53814550	53814643	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030996	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	134368939	134369078	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024099	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	80684416	80684521	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027096	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:19:1:49578535:1	4730520	4730702	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000030328	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	31420599	31420738	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026537	NOVEL	miRNA	ENSCJAG00000026537	chromosome:C_jacchus3.2.1:14:1:108792865:1	14806727	14806813	D	<no descrition>
ENSCJAG00000027753	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	77537337	77537443	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029992	NOVEL	miRNA	ENSCJAG00000029992	chromosome:C_jacchus3.2.1:1:1:210400635:1	69182664	69182762	D	<no descrition>
ENSCJAG00000030613	NOVEL	snoRNA	snoR38	chromosome:C_jacchus3.2.1:5:1:159171411:1	125841620	125841697	D	Small nucleolar RNA R38 [Source:RFAM;Acc:RF00213]
ENSCJAG00000031295	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	83162444	83162535	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024580	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126865999	126866073	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000035298	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29309259	29309377	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035813	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	108696321	108696617	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034794	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29553430	29553534	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027022	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	150409699	150409804	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027614	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	153851515	153851621	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029863	NOVEL	snoRNA	SNORA57	chromosome:C_jacchus3.2.1:11:1:130397257:1	73087804	73087952	D	Small nucleolar RNA SNORA57 [Source:RFAM;Acc:RF00191]
ENSCJAG00000024229	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	103838796	103838980	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000028139	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	101877269	101877375	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036906	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286420.1:1:869074:1	368422	368518	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023942	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1337905	1337986	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000026444	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:8:1:128169293:1	5359320	5359455	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000028966	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	134692374	134692474	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036823	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	42432453	42432749	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038148	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL288422.1:1:21813:1	341	480	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027347	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	127467468	127467571	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035037	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	40850823	40850913	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024603	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	90237012	90237120	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036276	NOVEL	miRNA	ENSCJAG00000036276	chromosome:C_jacchus3.2.1:10:1:132174527:1	14891757	14891872	D	<no descrition>
ENSCJAG00000036491	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	39928969	39929065	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037611	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	700094	700200	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025388	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	135996251	135996357	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025856	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:2:1:204313951:1	125116845	125116945	R	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000033197	NOVEL	miRNA	ENSCJAG00000033197	chromosome:C_jacchus3.2.1:17:1:74750902:1	47780157	47780229	D	<no descrition>
ENSCJAG00000024196	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	46718656	46718754	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029925	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	62395326	62395466	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028990	NOVEL	snoRNA	SNORA3	chromosome:C_jacchus3.2.1:11:1:130397257:1	72124071	72124201	D	Small nucleolar RNA SNORA3/SNORA45 family [Source:RFAM;Acc:RF00334]
ENSCJAG00000028492	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	86168269	86168382	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025143	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	109086658	109086759	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034636	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	53705432	53705540	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024674	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:8:1:128169293:1	5374916	5375052	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000029771	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	9439716	9439879	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037690	NOVEL	miRNA	ENSCJAG00000037690	chromosome:C_jacchus3.2.1:2:1:204313951:1	71083400	71083495	R	<no descrition>
ENSCJAG00000025996	NOVEL	miRNA	ENSCJAG00000025996	chromosome:C_jacchus3.2.1:2:1:204313951:1	33562426	33562516	R	<no descrition>
ENSCJAG00000036259	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	63343831	63344125	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027897	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	123881594	123881688	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024466	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	1494861	1494966	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034928	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	150893083	150893189	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026278	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	99973886	99973992	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029328	NOVEL	miRNA	ENSCJAG00000029328	chromosome:C_jacchus3.2.1:5:1:159171411:1	50479683	50479768	R	<no descrition>
ENSCJAG00000031856	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:14:1:108792865:1	11088196	11088256	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000033359	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	85499379	85499484	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036630	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL288571.1:1:18748:1	14434	14729	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036280	NOVEL	miRNA	ENSCJAG00000036280	chromosome:C_jacchus3.2.1:2:1:204313951:1	200682886	200682990	R	<no descrition>
ENSCJAG00000025792	NOVEL	snoRNA	SNORD121A	chromosome:C_jacchus3.2.1:1:1:210400635:1	135701283	135701364	R	Small nucleolar RNA SNORD121A [Source:RFAM;Acc:RF01191]
ENSCJAG00000035731	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	21122712	21123006	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032887	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	169414568	169414671	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036339	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	1375840	1376137	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026048	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	156184528	156184668	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024341	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	64267724	64268037	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033654	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	19185236	19185343	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031825	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	56495501	56495604	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025519	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	53208280	53208393	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035181	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	118115297	118115404	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027417	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	130019859	130019965	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025981	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	71565116	71565219	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029325	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	43922447	43922768	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031388	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	110907164	110907262	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029966	NOVEL	snoRNA	SNORA46	chromosome:C_jacchus3.2.1:4:1:171630274:1	121909477	121909616	R	Small nucleolar RNA SNORA46 [Source:RFAM;Acc:RF00404]
ENSCJAG00000033438	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	113889427	113889522	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033774	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	63336987	63337093	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033522	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	93703126	93703225	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030343	NOVEL	snoRNA	SCARNA13	chromosome:C_jacchus3.2.1:3:1:190850796:1	150000737	150001023	R	Small Cajal body specific RNA 13 [Source:RFAM;Acc:RF00231]
ENSCJAG00000024017	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	96500030	96500137	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025401	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	33206943	33207051	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037401	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	24574720	24575016	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034775	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	105721328	105721454	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027930	NOVEL	snoRNA	SNORD30	chromosome:C_jacchus3.2.1:11:1:130397257:1	118548875	118548944	R	Small nucleolar RNA SNORD30 [Source:RFAM;Acc:RF00088]
ENSCJAG00000024206	NOVEL	miRNA	ENSCJAG00000024206	chromosome:C_jacchus3.2.1:11:1:130397257:1	16026411	16026494	R	<no descrition>
ENSCJAG00000025972	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	88346074	88346164	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033334	NOVEL	snoRNA	SNORD63	chromosome:C_jacchus3.2.1:15:1:98464013:1	29327776	29327855	R	Small nucleolar RNA SNORD63 [Source:RFAM;Acc:RF00154]
ENSCJAG00000028279	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:19:1:49578535:1	45676154	45676282	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000037653	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	173104498	173104794	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029549	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	63980962	63981124	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031533	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	88691758	88691864	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037015	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	32766631	32766927	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036195	NOVEL	miRNA	ENSCJAG00000036195	scaffold:C_jacchus3.2.1:GL286646.1:1:14603:1	8362	8449	D	<no descrition>
ENSCJAG00000029056	NOVEL	miRNA	ENSCJAG00000029056	chromosome:C_jacchus3.2.1:22:1:49145316:1	41386441	41386523	R	<no descrition>
ENSCJAG00000028795	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	23572192	23572298	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028125	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	87776900	87777018	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026851	NOVEL	snoRNA	SNORD111	chromosome:C_jacchus3.2.1:20:1:44557958:1	27860970	27861049	R	Small nucleolar RNA SNORD111 [Source:RFAM;Acc:RF00611]
ENSCJAG00000027813	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	103295161	103295321	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030305	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:15:1:98464013:1	35059850	35060104	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023756	NOVEL	miRNA	ENSCJAG00000023756	chromosome:C_jacchus3.2.1:4:1:171630274:1	106274832	106274923	D	<no descrition>
ENSCJAG00000033582	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	33016191	33016315	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036067	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	37705711	37706005	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023833	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	53117429	53117545	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029084	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	167451386	167451487	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026098	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	36208024	36208130	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026317	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	4699974	4700069	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026404	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	123995349	123995448	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037498	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL284814.1:1:18834:1	17078	17192	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037013	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	147426567	147426861	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025989	NOVEL	miRNA	ENSCJAG00000025989	chromosome:C_jacchus3.2.1:9:1:124281992:1	104096718	104096809	R	<no descrition>
ENSCJAG00000029563	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:11:1:130397257:1	20367027	20367217	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000032846	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	11056263	11056404	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032640	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	23519639	23519739	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032553	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	63923842	63923948	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034232	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:3:1:190850796:1	11951605	11951667	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000025036	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:X:1:142054208:1	98365073	98365147	R	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000028680	NOVEL	snoRNA	SCARNA17	chromosome:C_jacchus3.2.1:13:1:117903854:1	87730404	87730542	D	small Cajal body-specific RNA 17 [Source:RFAM;Acc:RF00492]
ENSCJAG00000035956	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	129113097	129113391	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036966	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	91294107	91294404	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034973	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:2:1:204313951:1	83081140	83081263	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000035052	NOVEL	miRNA	ENSCJAG00000035052	chromosome:C_jacchus3.2.1:2:1:204313951:1	52741728	52741876	R	<no descrition>
ENSCJAG00000023650	NOVEL	miRNA	ENSCJAG00000023650	chromosome:C_jacchus3.2.1:1:1:210400635:1	41792178	41792268	R	<no descrition>
ENSCJAG00000025506	NOVEL	miRNA	ENSCJAG00000025506	chromosome:C_jacchus3.2.1:X:1:142054208:1	137208814	137208902	R	<no descrition>
ENSCJAG00000036250	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	134790259	134790555	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037058	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	131680542	131680837	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038089	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	84031	84137	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023769	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	33376948	33377049	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027705	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:21:1:50472720:1	36803840	36803974	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000023767	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:22:1:49145316:1	9605703	9605935	R	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000037296	NOVEL	miRNA	ENSCJAG00000037296	chromosome:C_jacchus3.2.1:5:1:159171411:1	43852564	43852664	D	<no descrition>
ENSCJAG00000036245	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	80866156	80866451	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027386	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	83751713	83751814	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024409	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	11459947	11460052	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036318	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	121535848	121536145	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036930	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	21281466	21281763	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034000	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:5:1:159171411:1	48773041	48773165	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000024925	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	125986327	125986422	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024954	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	31358423	31358525	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024394	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	102697086	102697192	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023898	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:3:1:190850796:1	74443024	74443150	R	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000035058	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	136685208	136685304	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036650	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	79639061	79639356	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029653	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	52478510	52478617	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037431	NOVEL	miRNA	ENSCJAG00000037431	scaffold:C_jacchus3.2.1:GL288372.1:1:20448:1	17490	17578	R	<no descrition>
ENSCJAG00000032844	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	34068606	34068712	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028476	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	69152682	69152788	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025834	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	9462247	9462349	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030885	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	100858234	100858340	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029947	NOVEL	snoRNA	SNORA38	chromosome:C_jacchus3.2.1:5:1:159171411:1	121052663	121052793	D	Small nucleolar RNA SNORA38 [Source:RFAM;Acc:RF00428]
ENSCJAG00000030178	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	29689851	29689953	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032878	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	50121601	50121662	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000024476	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	77665689	77665819	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024351	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	606563	606669	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035755	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288637.1:1:24808:1	24095	24192	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026800	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	176250182	176250285	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027788	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	42032979	42033077	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034953	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:5:1:159171411:1	77072335	77072441	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000030382	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	20513919	20514028	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028053	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	99811824	99811964	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034504	NOVEL	miRNA	ENSCJAG00000034504	chromosome:C_jacchus3.2.1:9:1:124281992:1	58592822	58592899	R	<no descrition>
ENSCJAG00000024592	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1152940	1153034	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000035584	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	32375304	32375600	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026310	NOVEL	miRNA	ENSCJAG00000026310	chromosome:C_jacchus3.2.1:22:1:49145316:1	6823744	6823841	D	<no descrition>
ENSCJAG00000028546	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:11:1:130397257:1	118541342	118541532	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037726	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL284898.1:1:11282:1	3834	3937	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037855	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	114173173	114173465	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026263	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	7616081	7616187	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025617	NOVEL	miRNA	ENSCJAG00000025617	chromosome:C_jacchus3.2.1:19:1:49578535:1	29755855	29755942	R	<no descrition>
ENSCJAG00000035607	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	194187711	194188007	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034104	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	91566989	91567091	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035113	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	17249835	17249935	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025093	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:10:1:132174527:1	84869658	84869790	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000025155	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:11:1:130397257:1	16330631	16330769	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000036612	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	111090413	111090708	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033405	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:13:1:117903854:1	61515829	61515944	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000024863	NOVEL	snoRNA	SNORD110	chromosome:C_jacchus3.2.1:5:1:159171411:1	8443404	8443478	D	Small nucleolar RNA SNORD110 [Source:RFAM;Acc:RF00610]
ENSCJAG00000028831	NOVEL	miRNA	ENSCJAG00000028831	chromosome:C_jacchus3.2.1:13:1:117903854:1	59037921	59038005	R	<no descrition>
ENSCJAG00000029114	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	91951479	91951570	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025976	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	10355731	10355837	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024265	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	77855565	77855671	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032200	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	27926453	27926558	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032985	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	152605761	152605931	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029737	NOVEL	snoRNA	SNORA1	chromosome:C_jacchus3.2.1:19:1:49578535:1	25589151	25589283	D	Small nucleolar RNA SNORA1 [Source:RFAM;Acc:RF00408]
ENSCJAG00000027297	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	126266620	126266742	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030730	NOVEL	miRNA	ENSCJAG00000030730	chromosome:C_jacchus3.2.1:8:1:128169293:1	95563093	95563190	R	<no descrition>
ENSCJAG00000023563	NOVEL	miRNA	ENSCJAG00000023563	chromosome:C_jacchus3.2.1:4:1:171630274:1	69854174	69854287	D	<no descrition>
ENSCJAG00000034496	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	29165881	29166010	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030528	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	41577716	41577823	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037720	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288648.1:1:8814:1	6063	6160	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025650	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	76699716	76699822	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029560	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	52446364	52446470	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027304	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	97373245	97373578	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029442	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	140154029	140154134	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028812	NOVEL	snoRNA	SNORA19	chromosome:C_jacchus3.2.1:7:1:155834243:1	87131887	87132015	R	Small nucleolar RNA SNORA19 [Source:RFAM;Acc:RF00413]
ENSCJAG00000034038	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	43278577	43278681	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028534	NOVEL	snoRNA	SNORA71	chromosome:C_jacchus3.2.1:5:1:159171411:1	32476391	32476524	D	Small nucleolar RNA SNORA71 [Source:RFAM;Acc:RF00056]
ENSCJAG00000037517	NOVEL	miRNA	ENSCJAG00000037517	chromosome:C_jacchus3.2.1:8:1:128169293:1	85741237	85741328	R	<no descrition>
ENSCJAG00000035636	NOVEL	miRNA	ENSCJAG00000035636	chromosome:C_jacchus3.2.1:20:1:44557958:1	3536325	3536405	D	<no descrition>
ENSCJAG00000028849	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	35768080	35768241	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032836	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:4:1:171630274:1	68795587	68795648	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030491	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	22831765	22831921	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027449	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	121504448	121504554	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027749	NOVEL	snoRNA	SNORD35	chromosome:C_jacchus3.2.1:22:1:49145316:1	41382099	41382185	D	Small nucleolar RNA SNORD35 [Source:RFAM;Acc:RF00211]
ENSCJAG00000030351	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:7:1:155834243:1	111501407	111501485	D	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000029061	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	66047054	66047165	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026585	NOVEL	miRNA	ENSCJAG00000026585	chromosome:C_jacchus3.2.1:1:1:210400635:1	95821685	95821837	D	<no descrition>
ENSCJAG00000036780	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	4066528	4066824	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037848	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	10085261	10085556	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023488	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:10:1:132174527:1	59567826	59567964	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000034307	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	16190503	16190609	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028066	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	97444063	97444392	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026998	NOVEL	miRNA	ENSCJAG00000026998	chromosome:C_jacchus3.2.1:20:1:44557958:1	23824808	23824877	D	<no descrition>
ENSCJAG00000036938	NOVEL	miRNA	ENSCJAG00000036938	chromosome:C_jacchus3.2.1:X:1:142054208:1	122064932	122065025	R	<no descrition>
ENSCJAG00000023839	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	136542225	136542318	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026107	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	47559413	47559513	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024914	NOVEL	miRNA	ENSCJAG00000024914	chromosome:C_jacchus3.2.1:10:1:132174527:1	126984283	126984372	D	<no descrition>
ENSCJAG00000035988	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	11391190	11391483	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034567	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	21134012	21134112	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030188	NOVEL	miRNA	ENSCJAG00000030188	chromosome:C_jacchus3.2.1:10:1:132174527:1	91117961	91118055	R	<no descrition>
ENSCJAG00000032308	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:5:1:159171411:1	158683230	158683362	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000029711	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	10036936	10037042	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027092	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	128633255	128633356	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026470	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	108565811	108565914	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037153	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	32721488	32721782	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026413	NOVEL	miRNA	ENSCJAG00000026413	chromosome:C_jacchus3.2.1:7:1:155834243:1	62006111	62006176	D	<no descrition>
ENSCJAG00000025122	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	150689693	150689836	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036794	NOVEL	miRNA	ENSCJAG00000036794	chromosome:C_jacchus3.2.1:9:1:124281992:1	102309977	102310085	R	<no descrition>
ENSCJAG00000033092	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	18614564	18614670	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025694	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	64623146	64623254	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037007	NOVEL	miRNA	ENSCJAG00000037007	chromosome:C_jacchus3.2.1:8:1:128169293:1	59975058	59975140	D	<no descrition>
ENSCJAG00000030687	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1138021	1138115	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000025530	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	74624238	74624537	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036524	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	31646393	31646688	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026840	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:17:1:74750902:1	70663424	70663556	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000027384	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	197106821	197106932	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032776	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	151011014	151011103	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035947	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL287442.1:1:64216:1	22182	22288	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027365	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	102529016	102529115	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029287	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	6140884	6141024	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024458	NOVEL	miRNA	ENSCJAG00000024458	chromosome:C_jacchus3.2.1:21:1:50472720:1	29519480	29519544	D	<no descrition>
ENSCJAG00000029115	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	91888714	91888815	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025253	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1141352	1141448	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000036330	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	98998299	98998593	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023827	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	60422602	60422740	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033984	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	48344282	48344383	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027409	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	67245701	67245808	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038060	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	36847470	36847766	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025357	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	34978635	34978737	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027419	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:3:1:190850796:1	37681080	37681271	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037861	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	63268743	63269037	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032526	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	128447654	128447757	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023764	NOVEL	miRNA	ENSCJAG00000023764	chromosome:C_jacchus3.2.1:22:1:49145316:1	29188909	29188975	R	<no descrition>
ENSCJAG00000028389	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	74344401	74344519	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026829	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	30556958	30557064	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036137	NOVEL	miRNA	ENSCJAG00000036137	chromosome:C_jacchus3.2.1:12:1:121768101:1	18515180	18515266	R	<no descrition>
ENSCJAG00000026869	NOVEL	miRNA	ENSCJAG00000026869	chromosome:C_jacchus3.2.1:1:1:210400635:1	186194781	186194875	D	<no descrition>
ENSCJAG00000026156	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	43379250	43379390	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030212	NOVEL	snoRNA	SNORA44	chromosome:C_jacchus3.2.1:7:1:155834243:1	62774132	62774261	R	Small nucleolar RNA SNORA44 [Source:RFAM;Acc:RF00405]
ENSCJAG00000035716	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	6177838	6178134	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030105	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	35219338	35219441	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028301	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	47431673	47431771	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036409	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285304.1:1:11526:1	8321	8427	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034306	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	40702095	40702197	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037662	NOVEL	miRNA	ENSCJAG00000037662	chromosome:C_jacchus3.2.1:6:1:158406734:1	119827949	119828049	R	<no descrition>
ENSCJAG00000033309	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	7321353	7321456	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034607	NOVEL	snoRNA	SNORA27	chromosome:C_jacchus3.2.1:9:1:124281992:1	105208104	105208240	D	Small nucleolar RNA SNORA27 [Source:RFAM;Acc:RF00443]
ENSCJAG00000037783	NOVEL	miRNA	ENSCJAG00000037783	chromosome:C_jacchus3.2.1:6:1:158406734:1	60422101	60422182	D	<no descrition>
ENSCJAG00000025843	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	53570421	53570522	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025832	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	58193019	58193136	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032370	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	107371899	107372002	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024789	NOVEL	snoRNA	SNORD79	chromosome:C_jacchus3.2.1:18:1:47448759:1	33119905	33119987	D	Small nucleolar RNA SNORD79 [Source:RFAM;Acc:RF00152]
ENSCJAG00000028871	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	20399967	20400072	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026347	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	7117866	7117972	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037899	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	51680904	51681202	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034425	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	126751406	126751477	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000033389	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	33884123	33884229	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025836	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	142304902	142305014	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032449	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	1753237	1753341	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027247	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	21009251	21009359	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027045	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	57695699	57695800	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029183	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	18454340	18454443	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027067	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	60246471	60246586	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033423	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	599099	599199	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030334	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	2199954	2200056	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025074	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	64657749	64657860	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030159	NOVEL	miRNA	ENSCJAG00000030159	chromosome:C_jacchus3.2.1:X:1:142054208:1	27259628	27259714	R	<no descrition>
ENSCJAG00000037973	NOVEL	miRNA	ENSCJAG00000037973	chromosome:C_jacchus3.2.1:19:1:49578535:1	32156320	32156386	R	<no descrition>
ENSCJAG00000024059	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1346861	1346945	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000035743	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	7038321	7038617	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031906	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	87520137	87520218	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027547	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	49302292	49302454	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037131	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285782.1:1:10899:1	2676	2839	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028802	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	9106664	9106770	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023960	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	120561632	120561739	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025955	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:22:1:49145316:1	17544649	17544710	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000028148	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	176835125	176835231	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038076	NOVEL	miRNA	ENSCJAG00000038076	chromosome:C_jacchus3.2.1:2:1:204313951:1	94268090	94268145	R	<no descrition>
ENSCJAG00000023737	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	193367098	193367215	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035774	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	94498366	94498663	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026100	NOVEL	miRNA	ENSCJAG00000026100	chromosome:C_jacchus3.2.1:10:1:132174527:1	126963298	126963372	D	<no descrition>
ENSCJAG00000036771	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	52358875	52359170	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023820	NOVEL	miRNA	ENSCJAG00000023820	chromosome:C_jacchus3.2.1:13:1:117903854:1	63567298	63567380	R	<no descrition>
ENSCJAG00000024702	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	22958425	22958531	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036364	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	140905516	140905807	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026774	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	112517387	112517489	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026148	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:12:1:121768101:1	74325123	74325245	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000025296	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	135218304	135218419	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000024813	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	9715548	9715688	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037021	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	137014665	137014961	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025359	NOVEL	miRNA	ENSCJAG00000025359	chromosome:C_jacchus3.2.1:5:1:159171411:1	51701105	51701245	D	<no descrition>
ENSCJAG00000033407	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	73400018	73400085	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000032753	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	114169374	114169436	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000024410	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	118540362	118540473	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033218	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	25798058	25798181	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037622	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	50120845	50121140	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035657	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	19370978	19371274	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037878	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	16566597	16566893	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028127	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	10163433	10163712	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027820	NOVEL	miRNA	ENSCJAG00000027820	chromosome:C_jacchus3.2.1:17:1:74750902:1	53594577	53594669	R	<no descrition>
ENSCJAG00000028694	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	45844098	45844204	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026180	NOVEL	miRNA	ENSCJAG00000026180	chromosome:C_jacchus3.2.1:4:1:171630274:1	120599143	120599236	D	<no descrition>
ENSCJAG00000024862	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	76672401	76672525	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033841	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	86382142	86382227	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027191	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:19:1:49578535:1	45106061	45106199	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036920	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	10071114	10071410	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034023	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:17:1:74750902:1	17574091	17574242	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000024189	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	32948139	32948245	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027784	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	156606095	156606200	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028982	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	137405247	137405350	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028899	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:7:1:155834243:1	151698999	151699131	R	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000036898	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	107646863	107647159	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036764	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	51176963	51177258	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025673	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:1:1:210400635:1	133851012	133851130	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000029611	NOVEL	miRNA	ENSCJAG00000029611	chromosome:C_jacchus3.2.1:14:1:108792865:1	92241335	92241425	D	<no descrition>
ENSCJAG00000037377	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL284753.1:1:413897:1	235748	235854	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031344	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	71749007	71749110	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025880	NOVEL	miRNA	ENSCJAG00000025880	chromosome:C_jacchus3.2.1:X:1:142054208:1	61940819	61940902	D	<no descrition>
ENSCJAG00000026295	NOVEL	miRNA	ENSCJAG00000026295	chromosome:C_jacchus3.2.1:20:1:44557958:1	3849880	3849947	D	<no descrition>
ENSCJAG00000036839	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	147785155	147785451	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036919	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285106.1:1:44946:1	22929	23231	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035046	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	5687227	5687339	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026677	NOVEL	miRNA	ENSCJAG00000026677	chromosome:C_jacchus3.2.1:21:1:50472720:1	37175576	37175669	R	<no descrition>
ENSCJAG00000033513	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	52226928	52227034	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028199	NOVEL	snoRNA	SNORA8	chromosome:C_jacchus3.2.1:11:1:130397257:1	44108283	44108421	D	Small nucleolar RNA SNORA8 [Source:RFAM;Acc:RF00393]
ENSCJAG00000036460	NOVEL	miRNA	ENSCJAG00000036460	chromosome:C_jacchus3.2.1:19:1:49578535:1	44438191	44438251	D	<no descrition>
ENSCJAG00000028503	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	95034251	95034352	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026788	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	116772373	116772485	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035585	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	16356390	16356687	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035582	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286879.1:1:8295:1	737	843	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037753	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	10986160	10986457	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033711	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	103229728	103229840	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036783	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	69965587	69965883	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029935	NOVEL	miRNA	ENSCJAG00000029935	chromosome:C_jacchus3.2.1:16:1:96796970:1	95025079	95025154	D	<no descrition>
ENSCJAG00000030621	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	54785759	54785862	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023816	NOVEL	miRNA	ENSCJAG00000023816	chromosome:C_jacchus3.2.1:9:1:124281992:1	48570904	48571024	R	<no descrition>
ENSCJAG00000024200	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	150762285	150762392	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037439	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	37704512	37704800	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025190	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	58126270	58126434	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030440	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	81051678	81051784	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036314	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	31475091	31475389	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034527	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	24062371	24062473	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032038	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	30183967	30184073	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029998	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	74176076	74176208	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027893	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	201622346	201622449	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025141	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	70003632	70003750	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024384	NOVEL	snoRNA	SNORD28	chromosome:C_jacchus3.2.1:11:1:130397257:1	118549796	118549870	R	Small nucleolar RNA SNORD28 [Source:RFAM;Acc:RF00085]
ENSCJAG00000026337	NOVEL	miRNA	ENSCJAG00000026337	chromosome:C_jacchus3.2.1:X:1:142054208:1	5946620	5946718	D	<no descrition>
ENSCJAG00000033527	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	10504529	10504676	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000026741	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	17053799	17053939	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037936	NOVEL	miRNA	ENSCJAG00000037936	chromosome:C_jacchus3.2.1:1:1:210400635:1	78275746	78275826	R	<no descrition>
ENSCJAG00000036655	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	102648580	102648873	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033236	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	46430186	46430284	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023770	NOVEL	miRNA	ENSCJAG00000023770	chromosome:C_jacchus3.2.1:1:1:210400635:1	71141565	71141610	R	<no descrition>
ENSCJAG00000031297	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:X:1:142054208:1	25800985	25801046	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000024864	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:17:1:74750902:1	68883155	68883233	D	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000033388	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	12742720	12742824	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029463	NOVEL	snoRNA	SNORD29	chromosome:C_jacchus3.2.1:11:1:130397257:1	118549117	118549181	R	Small nucleolar RNA SNORD29 [Source:RFAM;Acc:RF00070]
ENSCJAG00000025873	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	40926738	40927055	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032763	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	133157576	133157694	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024589	NOVEL	miRNA	ENSCJAG00000024589	chromosome:C_jacchus3.2.1:12:1:121768101:1	90809983	90810131	R	<no descrition>
ENSCJAG00000029321	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	197604188	197604326	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035794	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	105737878	105738174	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028811	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	119054724	119054830	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027250	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	24882	24988	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031294	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	6276390	6276490	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028878	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	118560254	118560349	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037078	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	186475137	186475434	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026429	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:3:1:190850796:1	26139159	26139310	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000023896	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	149375324	149375454	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032134	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	143096762	143097068	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032768	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:3:1:190850796:1	110535707	110535825	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035458	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	122987617	122987724	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028551	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	65728633	65728733	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025522	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	184451162	184451286	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031942	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	111133949	111134055	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032935	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	46811877	46811983	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034481	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	21703914	21704022	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026673	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	50710483	50710595	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025306	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:11:1:130397257:1	54972393	54972527	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000033627	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	126379702	126379921	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028198	NOVEL	miRNA	ENSCJAG00000028198	chromosome:C_jacchus3.2.1:4:1:171630274:1	69806415	69806505	R	<no descrition>
ENSCJAG00000036765	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	108449804	108450100	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025599	NOVEL	miRNA	ENSCJAG00000025599	chromosome:C_jacchus3.2.1:22:1:49145316:1	43320052	43320121	D	<no descrition>
ENSCJAG00000025820	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1278468	1278548	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000038057	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	35338850	35339146	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029489	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:14:1:108792865:1	101167935	101168093	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034592	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	96373970	96374073	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033453	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	72242443	72242551	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031743	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	113463454	113463557	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035048	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	186133518	186133612	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028717	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	101143791	101144095	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023484	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	145541731	145541833	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024643	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	3727245	3727362	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023669	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	34096319	34096438	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025038	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	68296870	68296952	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036135	NOVEL	miRNA	ENSCJAG00000036135	chromosome:C_jacchus3.2.1:6:1:158406734:1	49724166	49724256	R	<no descrition>
ENSCJAG00000036420	NOVEL	miRNA	ENSCJAG00000036420	chromosome:C_jacchus3.2.1:2:1:204313951:1	103417595	103417702	D	<no descrition>
ENSCJAG00000028598	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:20:1:44557958:1	27516422	27516537	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000027771	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	72506675	72506781	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034238	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	4971755	4971858	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035596	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	66158942	66159237	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028670	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	87243571	87243676	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029747	NOVEL	miRNA	ENSCJAG00000029747	chromosome:C_jacchus3.2.1:14:1:108792865:1	56910355	56910448	D	<no descrition>
ENSCJAG00000035896	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	1580557	1580852	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036347	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	99852866	99853162	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035522	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286708.1:1:13732:1	2222	2325	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037127	NOVEL	miRNA	ENSCJAG00000037127	chromosome:C_jacchus3.2.1:7:1:155834243:1	7586641	7586724	R	<no descrition>
ENSCJAG00000025477	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	52076654	52076772	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035489	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:9:1:124281992:1	82120154	82120203	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000026196	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	45692494	45692600	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024420	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	74154635	74154736	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036011	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	174553647	174553698	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034312	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	89568353	89568483	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034642	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	34520910	34521011	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027142	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	46700690	46700793	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024761	NOVEL	snoRNA	SNORD46	chromosome:C_jacchus3.2.1:7:1:155834243:1	79541938	79542041	D	Small nucleolar RNA SNORD46 [Source:RFAM;Acc:RF00218]
ENSCJAG00000033024	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	7996507	7996613	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032667	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	91925974	91926076	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034202	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	60802860	60803146	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031268	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	5778532	5778631	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026366	NOVEL	snoRNA	SNORA32	chromosome:C_jacchus3.2.1:7:1:155834243:1	148994316	148994436	D	Small nucleolar RNA SNORA32 [Source:RFAM;Acc:RF00421]
ENSCJAG00000023482	NOVEL	snoRNA	SNORD19B	chromosome:C_jacchus3.2.1:15:1:98464013:1	28465221	28465304	D	Small nucleolar RNA SNORD19B [Source:RFAM;Acc:RF01183]
ENSCJAG00000025053	NOVEL	miRNA	ENSCJAG00000025053	chromosome:C_jacchus3.2.1:22:1:49145316:1	44963244	44963329	D	<no descrition>
ENSCJAG00000028825	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	79388756	79388864	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037317	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	24029367	24029658	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029062	NOVEL	miRNA	ENSCJAG00000029062	chromosome:C_jacchus3.2.1:11:1:130397257:1	63085445	63085513	R	<no descrition>
ENSCJAG00000035705	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	30759209	30759505	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030213	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	106614481	106614801	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028109	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	133616031	133616143	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036559	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	54281761	54282051	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036474	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	44935826	44936115	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035119	NOVEL	snoRNA	SNORA28	chromosome:C_jacchus3.2.1:10:1:132174527:1	129266660	129266785	D	Small nucleolar RNA SNORA28 [Source:RFAM;Acc:RF00400]
ENSCJAG00000037577	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:1:1:210400635:1	23101002	23101150	R	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000027530	NOVEL	miRNA	ENSCJAG00000027530	chromosome:C_jacchus3.2.1:1:1:210400635:1	184472750	184472831	D	<no descrition>
ENSCJAG00000023989	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	112147346	112147447	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032925	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	3696517	3696623	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037257	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	11057942	11058238	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034932	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:3:1:190850796:1	54750120	54750181	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000026525	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	65944274	65944380	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024979	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	20518237	20518336	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023493	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	18274039	18274146	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025847	NOVEL	miRNA	ENSCJAG00000025847	chromosome:C_jacchus3.2.1:2:1:204313951:1	85949116	85949197	R	<no descrition>
ENSCJAG00000030236	NOVEL	snoRNA	SNORA49	chromosome:C_jacchus3.2.1:5:1:159171411:1	1822887	1823022	D	Small nucleolar RNA SNORA49 [Source:RFAM;Acc:RF00562]
ENSCJAG00000026177	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	151669019	151669158	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029844	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	68324519	68324858	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032560	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	5976429	5976520	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032687	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	55726734	55726841	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027242	NOVEL	miRNA	ENSCJAG00000027242	chromosome:C_jacchus3.2.1:X:1:142054208:1	134456737	134456829	R	<no descrition>
ENSCJAG00000032905	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	71811624	71811725	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028940	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	43001411	43001514	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023719	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	43034906	43035018	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033618	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	41538894	41538996	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031286	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:X:1:142054208:1	81385940	81386053	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000025557	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	39054748	39054848	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027123	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	76030456	76030577	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032341	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	21272068	21272174	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026649	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	2223579	2223682	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036225	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	63407646	63407932	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025535	NOVEL	miRNA	ENSCJAG00000025535	chromosome:C_jacchus3.2.1:1:1:210400635:1	76830071	76830173	D	<no descrition>
ENSCJAG00000024576	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	47377216	47377518	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024356	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	92129866	92129972	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037892	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	175795265	175795552	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031630	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	152243351	152243490	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026628	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	81766078	81766195	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025915	NOVEL	miRNA	ENSCJAG00000025915	chromosome:C_jacchus3.2.1:10:1:132174527:1	126942436	126942521	D	<no descrition>
ENSCJAG00000037986	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	72312881	72313177	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027713	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	8956880	8956983	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027956	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	9721154	9721260	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026086	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	114025555	114025667	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032883	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	142598758	142598863	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027283	NOVEL	miRNA	ENSCJAG00000027283	chromosome:C_jacchus3.2.1:15:1:98464013:1	84644643	84644746	R	<no descrition>
ENSCJAG00000032879	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	79992777	79992893	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035911	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	262486	262593	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024036	NOVEL	miRNA	ENSCJAG00000024036	chromosome:C_jacchus3.2.1:11:1:130397257:1	117149494	117149560	R	<no descrition>
ENSCJAG00000028147	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	33210337	33210443	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037149	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	20370408	20370704	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026968	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	81776228	81776331	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027293	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	10139618	10139726	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029462	NOVEL	miRNA	ENSCJAG00000029462	chromosome:C_jacchus3.2.1:2:1:204313951:1	167456610	167456704	D	<no descrition>
ENSCJAG00000037940	NOVEL	miRNA	ENSCJAG00000037940	chromosome:C_jacchus3.2.1:X:1:142054208:1	46348799	46348885	D	<no descrition>
ENSCJAG00000036155	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	77673638	77673933	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028021	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	5115524	5115630	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037968	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	77666049	77666318	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024305	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	96611284	96611385	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030130	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	28746771	28746893	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036653	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	48197601	48197896	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031435	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	31188258	31188360	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037890	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	59720030	59720305	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027536	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	45828904	45829010	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027072	NOVEL	snoRNA	SNORA33	chromosome:C_jacchus3.2.1:4:1:171630274:1	133200782	133200911	D	Small nucleolar RNA SNORA33 [Source:RFAM;Acc:RF00438]
ENSCJAG00000025061	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	40212434	40212573	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030623	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	146508650	146508790	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036698	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	88158231	88158525	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032151	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	47781741	47781853	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037812	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	114545854	114546150	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033722	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	35235304	35235410	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036746	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	11064983	11065274	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037209	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	117442084	117442379	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036003	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288680.1:1:10096:1	7018	7114	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030442	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	74629130	74629227	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024425	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:9:1:124281992:1	62622902	62623026	R	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000033915	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	53021838	53021943	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026214	NOVEL	miRNA	ENSCJAG00000026214	chromosome:C_jacchus3.2.1:7:1:155834243:1	105828451	105828538	R	<no descrition>
ENSCJAG00000026949	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:15:1:98464013:1	88305831	88305965	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000027846	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	64581931	64582034	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024920	NOVEL	miRNA	ENSCJAG00000024920	chromosome:C_jacchus3.2.1:10:1:132174527:1	126946640	126946760	D	<no descrition>
ENSCJAG00000033977	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:9:1:124281992:1	124039167	124039278	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000033408	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	95688309	95688641	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000034061	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	33753787	33753880	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033563	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	76282573	76282681	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034838	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	144366146	144366251	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037009	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	17217509	17217794	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036274	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	162595111	162595404	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032168	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	31493976	31494082	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029444	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	126429217	126429325	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037484	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	61177692	61177989	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025887	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	26135960	26136079	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031508	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:1:1:210400635:1	122785014	122785075	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037458	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	100601895	100602191	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029861	NOVEL	miRNA	ENSCJAG00000029861	chromosome:C_jacchus3.2.1:13:1:117903854:1	59034538	59034625	R	<no descrition>
ENSCJAG00000033061	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	94422862	94422953	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023646	NOVEL	miRNA	ENSCJAG00000023646	chromosome:C_jacchus3.2.1:10:1:132174527:1	125999881	125999979	D	<no descrition>
ENSCJAG00000035717	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	36719836	36720131	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036017	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286465.1:1:90687:1	8799	8898	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024620	NOVEL	miRNA	ENSCJAG00000024620	chromosome:C_jacchus3.2.1:X:1:142054208:1	122082573	122082653	R	<no descrition>
ENSCJAG00000029234	NOVEL	miRNA	ENSCJAG00000029234	chromosome:C_jacchus3.2.1:14:1:108792865:1	21311624	21311710	D	<no descrition>
ENSCJAG00000030407	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	46261618	46261724	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025953	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	50851694	50851800	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036171	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	136768927	136769224	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037087	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	196031876	196032171	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037303	NOVEL	miRNA	ENSCJAG00000037303	chromosome:C_jacchus3.2.1:12:1:121768101:1	51151987	51152073	D	<no descrition>
ENSCJAG00000033760	NOVEL	miRNA	ENSCJAG00000033760	chromosome:C_jacchus3.2.1:15:1:98464013:1	27446835	27446890	D	<no descrition>
ENSCJAG00000036237	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	47783521	47783814	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029349	NOVEL	miRNA	ENSCJAG00000029349	chromosome:C_jacchus3.2.1:5:1:159171411:1	133678912	133679003	D	<no descrition>
ENSCJAG00000025015	NOVEL	miRNA	ENSCJAG00000025015	chromosome:C_jacchus3.2.1:22:1:49145316:1	37708722	37708815	R	<no descrition>
ENSCJAG00000026376	NOVEL	snoRNA	snoZ40	chromosome:C_jacchus3.2.1:11:1:130397257:1	44109211	44109283	D	Small nucleolar RNA Z40 [Source:RFAM;Acc:RF00342]
ENSCJAG00000028251	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	44438143	44438251	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026094	NOVEL	miRNA	ENSCJAG00000026094	chromosome:C_jacchus3.2.1:8:1:128169293:1	73028177	73028273	R	<no descrition>
ENSCJAG00000035517	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	33991734	33992027	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033669	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	52111868	52111966	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026642	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	130220051	130220153	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033936	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	7203730	7203854	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000034445	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	32815380	32815486	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026981	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	47311332	47311483	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029724	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	60790881	60790978	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028778	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	71369855	71369973	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036177	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	43562525	43562821	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037907	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	77811568	77811866	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026996	NOVEL	miRNA	ENSCJAG00000026996	chromosome:C_jacchus3.2.1:21:1:50472720:1	21286668	21286761	D	<no descrition>
ENSCJAG00000028507	NOVEL	miRNA	ENSCJAG00000028507	chromosome:C_jacchus3.2.1:3:1:190850796:1	80984731	80984799	D	<no descrition>
ENSCJAG00000032707	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	121414482	121414542	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026232	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	131536783	131536888	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029344	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	55938255	55938359	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028533	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	59842096	59842202	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027774	NOVEL	miRNA	ENSCJAG00000027774	chromosome:C_jacchus3.2.1:10:1:132174527:1	126984737	126984816	D	<no descrition>
ENSCJAG00000027303	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	55056034	55056123	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037678	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	18484878	18485175	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027431	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	137872196	137872299	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027993	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	74893385	74893501	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000027998	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	75722814	75723004	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000035307	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	88744517	88744618	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036804	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	843124	843412	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023975	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:14:1:108792865:1	21238920	21239048	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000031140	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	34975737	34975839	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028396	NOVEL	miRNA	ENSCJAG00000028396	chromosome:C_jacchus3.2.1:X:1:142054208:1	139306484	139306593	R	<no descrition>
ENSCJAG00000028435	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:1:1:210400635:1	186921474	186921563	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000024629	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	116789153	116789311	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029402	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:10:1:132174527:1	82745436	82745570	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000037059	NOVEL	snoRNA	snoU83B	scaffold:C_jacchus3.2.1:GL284825.1:1:20775:1	14990	15081	R	Small nucleolar RNA U83B [Source:RFAM;Acc:RF00593]
ENSCJAG00000025335	NOVEL	snoRNA	SNORD77	chromosome:C_jacchus3.2.1:16:1:96796970:1	94589623	94589689	R	Small nucleolar RNA SNORD77 [Source:RFAM;Acc:RF00591]
ENSCJAG00000034727	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	7413084	7413190	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023618	NOVEL	snoRNA	SNORD70	chromosome:C_jacchus3.2.1:6:1:158406734:1	117883425	117883509	D	Small nucleolar RNA SNORD70 [Source:RFAM;Acc:RF00575]
ENSCJAG00000030636	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	48306625	48306731	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036122	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	13910348	13910643	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028611	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	137534205	137534306	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025321	NOVEL	miRNA	ENSCJAG00000025321	chromosome:C_jacchus3.2.1:X:1:142054208:1	49248796	49248908	R	<no descrition>
ENSCJAG00000037128	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	102602	102708	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030336	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	65370156	65370492	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028786	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	148230693	148230796	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032915	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	4374612	4374715	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024203	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	136369496	136369602	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030157	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	69479658	69479764	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028495	NOVEL	miRNA	ENSCJAG00000028495	chromosome:C_jacchus3.2.1:17:1:74750902:1	16921310	16921407	R	<no descrition>
ENSCJAG00000027869	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	70519494	70519600	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036123	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	52586964	52587259	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026166	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	113977330	113977431	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035091	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	35223796	35223913	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024317	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1127981	1128090	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000028442	NOVEL	miRNA	ENSCJAG00000028442	chromosome:C_jacchus3.2.1:2:1:204313951:1	168015620	168015722	R	<no descrition>
ENSCJAG00000030104	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	21338885	21338991	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029292	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	7544909	7545015	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034658	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	92011526	92011629	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038014	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286246.1:1:68537:1	31511	31619	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030817	NOVEL	miRNA	ENSCJAG00000030817	chromosome:C_jacchus3.2.1:8:1:128169293:1	119075831	119075927	D	<no descrition>
ENSCJAG00000028664	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	93982781	93982887	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027472	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	76774917	76775012	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031008	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:3:1:190850796:1	190003046	190003158	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000030224	NOVEL	miRNA	ENSCJAG00000030224	chromosome:C_jacchus3.2.1:1:1:210400635:1	6514961	6515047	D	<no descrition>
ENSCJAG00000027228	NOVEL	miRNA	ENSCJAG00000027228	chromosome:C_jacchus3.2.1:8:1:128169293:1	4876689	4876764	R	<no descrition>
ENSCJAG00000037002	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	75798494	75798790	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035316	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	21609732	21609831	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026079	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	47942240	47942368	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027767	NOVEL	miRNA	ENSCJAG00000027767	chromosome:C_jacchus3.2.1:12:1:121768101:1	96262483	96262572	D	<no descrition>
ENSCJAG00000028164	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	91283142	91283241	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035547	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	69504541	69504835	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037654	NOVEL	miRNA	ENSCJAG00000037654	chromosome:C_jacchus3.2.1:19:1:49578535:1	46241643	46241726	R	<no descrition>
ENSCJAG00000027687	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	86386676	86386782	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034771	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	153210107	153210227	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033758	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	79270007	79270068	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030025	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	21501903	21502006	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037979	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	58912171	58912471	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031431	NOVEL	miRNA	ENSCJAG00000031431	chromosome:C_jacchus3.2.1:1:1:210400635:1	198800780	198800851	R	<no descrition>
ENSCJAG00000037068	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286460.1:1:253382:1	31956	32062	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025883	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	103443032	103443135	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024808	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	185994828	185995159	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031119	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	54580856	54580917	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037294	NOVEL	miRNA	ENSCJAG00000037294	chromosome:C_jacchus3.2.1:2:1:204313951:1	3147698	3147790	R	<no descrition>
ENSCJAG00000030664	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	66359659	66359758	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033690	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	72360739	72360845	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037228	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	46596194	46596488	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026815	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	14682418	14682526	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024130	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	135879463	135879605	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029231	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:18:1:47448759:1	4212965	4213158	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000031244	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	24656124	24656226	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027372	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	106871407	106871572	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027020	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	86463836	86463937	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036168	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	133274283	133274579	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024307	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	117113824	117113927	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032635	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	11635959	11636080	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027245	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	31713710	31713850	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031941	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	45762041	45762146	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027927	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	107674324	107674427	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036514	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	116562022	116562318	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031871	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	101131578	101131683	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023979	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	152210889	152210995	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026707	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:14:1:108792865:1	102160387	102160533	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034042	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:17:1:74750902:1	56084387	56084450	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000024658	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	28190043	28190147	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031741	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:19:1:49578535:1	42580691	42580854	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036322	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	44338038	44338335	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036926	NOVEL	snoRNA	SNORD116	scaffold:C_jacchus3.2.1:GL290980.1:1:5715:1	3216	3311	R	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000031863	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29547933	29548028	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029184	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	11409078	11409218	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028161	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	8714413	8714519	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033097	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	63101255	63101365	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025204	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	5769892	5769995	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037739	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288646.1:1:14237:1	6698	6804	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036888	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	8009212	8009506	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023676	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	95094511	95094619	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037603	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	66302910	66303208	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031787	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	61273999	61274106	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036350	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	17088489	17088785	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031953	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	8625657	8625758	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036191	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	8240361	8240654	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033398	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	54074580	54074688	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026643	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	24211592	24211691	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023590	NOVEL	miRNA	ENSCJAG00000023590	chromosome:C_jacchus3.2.1:3:1:190850796:1	138305450	138305549	R	<no descrition>
ENSCJAG00000030780	NOVEL	miRNA	ENSCJAG00000030780	chromosome:C_jacchus3.2.1:1:1:210400635:1	6514660	6514741	D	<no descrition>
ENSCJAG00000026307	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	3470545	3470648	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036049	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	103227242	103227541	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036353	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	52195390	52195686	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031705	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	109714541	109714663	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000023946	NOVEL	miRNA	ENSCJAG00000023946	chromosome:C_jacchus3.2.1:5:1:159171411:1	60048291	60048363	R	<no descrition>
ENSCJAG00000031967	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	120934587	120934693	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031013	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	17760230	17760393	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035678	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	101282985	101283281	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030853	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	168244125	168244231	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036471	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	63009010	63009306	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033780	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	101378886	101378976	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033791	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	22732023	22732092	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034648	NOVEL	snoRNA	SNORD46	chromosome:C_jacchus3.2.1:4:1:171630274:1	45663634	45663734	R	Small nucleolar RNA SNORD46 [Source:RFAM;Acc:RF00218]
ENSCJAG00000028834	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	51938796	51938899	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037927	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	103386586	103386881	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036988	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	36833561	36833854	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037286	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	26609723	26610018	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024858	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	35565791	35565901	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026966	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	15035962	15036064	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029664	NOVEL	miRNA	ENSCJAG00000029664	chromosome:C_jacchus3.2.1:1:1:210400635:1	167210301	167210379	R	<no descrition>
ENSCJAG00000035855	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	105470385	105470496	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032820	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	152102227	152102327	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030045	NOVEL	miRNA	ENSCJAG00000030045	chromosome:C_jacchus3.2.1:10:1:132174527:1	126940514	126940592	D	<no descrition>
ENSCJAG00000033472	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:3:1:190850796:1	99826724	99826785	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037751	NOVEL	snRNA	U4atac	scaffold:C_jacchus3.2.1:GL284953.1:1:18785:1	5826	5973	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000036126	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	110515474	110515770	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035604	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	113779974	113780269	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028970	NOVEL	miRNA	ENSCJAG00000028970	chromosome:C_jacchus3.2.1:3:1:190850796:1	185982788	185982868	R	<no descrition>
ENSCJAG00000031018	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	130003685	130003794	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028536	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	8034273	8034384	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032267	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	167066237	167066320	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032807	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	55697537	55697655	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026288	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:22:1:49145316:1	47737896	47738220	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000034024	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	25110508	25110781	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024278	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1102403	1102496	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000024297	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	124209329	124209435	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034440	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	50511986	50512093	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028782	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	35225835	35225936	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024056	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88074934	88075054	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037621	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	65567710	65567985	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027216	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	24036639	24036745	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026654	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	124662044	124662150	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037208	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	34001593	34001684	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036642	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	75922475	75922771	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036873	NOVEL	miRNA	ENSCJAG00000036873	chromosome:C_jacchus3.2.1:2:1:204313951:1	104048411	104048490	R	<no descrition>
ENSCJAG00000036366	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288669.1:1:12570:1	3496	3602	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028511	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	114626321	114626427	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026092	NOVEL	miRNA	ENSCJAG00000026092	chromosome:C_jacchus3.2.1:7:1:155834243:1	19089468	19089547	R	<no descrition>
ENSCJAG00000026672	NOVEL	snoRNA	SNORD37	chromosome:C_jacchus3.2.1:10:1:132174527:1	49844568	49844632	R	Small nucleolar RNA SNORD37 [Source:RFAM;Acc:RF00440]
ENSCJAG00000032717	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	141472013	141472110	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030499	NOVEL	miRNA	ENSCJAG00000030499	chromosome:C_jacchus3.2.1:5:1:159171411:1	81632071	81632164	D	<no descrition>
ENSCJAG00000027759	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	13609158	13609310	D	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000025596	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	75744546	75744736	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000029945	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:7:1:155834243:1	111502352	111502435	D	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000029169	NOVEL	snoRNA	SNORD63	chromosome:C_jacchus3.2.1:2:1:204313951:1	35445370	35445439	R	Small nucleolar RNA SNORD63 [Source:RFAM;Acc:RF00154]
ENSCJAG00000033504	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92929399	92929518	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031107	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	7130945	7131052	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023459	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:8:1:128169293:1	38775187	38775315	D	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000023665	NOVEL	miRNA	ENSCJAG00000023665	chromosome:C_jacchus3.2.1:14:1:108792865:1	33570501	33570583	D	<no descrition>
ENSCJAG00000036808	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	83822744	83823037	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032093	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	4507378	4507472	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026676	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	71586878	71586984	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025013	NOVEL	miRNA	ENSCJAG00000025013	chromosome:C_jacchus3.2.1:21:1:50472720:1	39750984	39751077	D	<no descrition>
ENSCJAG00000036406	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	32312879	32313170	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032031	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:10:1:132174527:1	71468624	71468723	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000028478	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	74028492	74028632	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036399	NOVEL	miRNA	ENSCJAG00000036399	chromosome:C_jacchus3.2.1:14:1:108792865:1	8079775	8079866	D	<no descrition>
ENSCJAG00000030276	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	130828549	130828659	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026442	NOVEL	miRNA	ENSCJAG00000026442	chromosome:C_jacchus3.2.1:1:1:210400635:1	60681307	60681383	D	<no descrition>
ENSCJAG00000037486	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	70379582	70379875	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026612	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	78007964	78008070	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037056	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	89407888	89408180	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036334	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	150906823	150907114	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025452	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:14:1:108792865:1	103947928	103948056	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000028860	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	83449039	83449179	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030912	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	25470977	25471092	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027261	NOVEL	miRNA	ENSCJAG00000027261	chromosome:C_jacchus3.2.1:10:1:132174527:1	126951781	126951862	D	<no descrition>
ENSCJAG00000027592	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	49582349	49582473	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035700	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	43191722	43192017	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029493	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	35818752	35818866	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030489	NOVEL	miRNA	ENSCJAG00000030489	chromosome:C_jacchus3.2.1:3:1:190850796:1	36930618	36930713	D	<no descrition>
ENSCJAG00000037674	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	54986025	54986320	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029892	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	82292661	82292986	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027345	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	88615586	88615748	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028181	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	22344510	22344616	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036708	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	115935951	115936247	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027751	NOVEL	snoRNA	SNORA27	chromosome:C_jacchus3.2.1:12:1:121768101:1	14303880	14304005	D	Small nucleolar RNA SNORA27 [Source:RFAM;Acc:RF00443]
ENSCJAG00000033730	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	21684743	21684849	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034301	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	6176546	6176647	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024156	NOVEL	miRNA	ENSCJAG00000024156	chromosome:C_jacchus3.2.1:17:1:74750902:1	12700094	12700170	R	<no descrition>
ENSCJAG00000024739	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	62469749	62469855	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026483	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	76971062	76971375	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030596	NOVEL	miRNA	ENSCJAG00000030596	chromosome:C_jacchus3.2.1:9:1:124281992:1	21186684	21186741	R	<no descrition>
ENSCJAG00000023790	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	73601090	73601187	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033201	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	71353198	71353303	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024461	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	59021121	59021261	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028077	NOVEL	snoRNA	SNORD62	chromosome:C_jacchus3.2.1:1:1:210400635:1	181227139	181227238	D	Small nucleolar RNA SNORD62 [Source:RFAM;Acc:RF00153]
ENSCJAG00000030811	NOVEL	snoRNA	SNORD14	chromosome:C_jacchus3.2.1:11:1:130397257:1	20809336	20809423	R	Small nucleolar RNA SNORD14 [Source:RFAM;Acc:RF00016]
ENSCJAG00000037352	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	45589283	45589579	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025647	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	66731733	66731829	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033403	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	86348219	86348320	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035494	NOVEL	miRNA	ENSCJAG00000035494	chromosome:C_jacchus3.2.1:16:1:96796970:1	5391384	5391505	R	<no descrition>
ENSCJAG00000032361	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	21258085	21258187	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029687	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	58973284	58973423	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026451	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	46691671	46691775	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030277	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	136386649	136386795	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027495	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	14817294	14817395	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036206	NOVEL	miRNA	ENSCJAG00000036206	chromosome:C_jacchus3.2.1:2:1:204313951:1	61395132	61395208	R	<no descrition>
ENSCJAG00000035235	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	45000887	45000925	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037915	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	51252120	51252416	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035509	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	24635185	24635480	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024321	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	9798190	9798300	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036770	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	115912780	115913077	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033839	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:1:1:210400635:1	144489871	144489956	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000030147	NOVEL	miRNA	ENSCJAG00000030147	chromosome:C_jacchus3.2.1:15:1:98464013:1	85761519	85761639	D	<no descrition>
ENSCJAG00000025772	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	34314334	34314440	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025135	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	9811979	9812081	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034915	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	34980461	34980565	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025959	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	79437821	79437927	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036677	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	60430945	60431239	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028615	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	62270625	62270765	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037030	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	88617758	88618053	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035971	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	55350496	55350792	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029980	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	31763914	31764015	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033568	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	37297382	37297594	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029029	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	71280502	71280810	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035941	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	1204404	1204701	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033613	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	55537606	55537698	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031023	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	33365194	33365300	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026744	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:8:1:128169293:1	76204414	76204556	D	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000023889	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	140986163	140986265	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025639	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	32894985	32895077	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026611	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	69689271	69689379	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025012	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	71014769	71014875	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036267	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL287890.1:1:55300:1	30576	30673	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025598	NOVEL	snoRNA	SNORA69	chromosome:C_jacchus3.2.1:X:1:142054208:1	107878342	107878473	R	Small nucleolar RNA SNORA69 [Source:RFAM;Acc:RF00265]
ENSCJAG00000027529	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	123993911	123994012	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034846	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	111117880	111117987	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033025	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	20165280	20165397	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032290	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:19:1:49578535:1	34011028	34011147	D	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000035871	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	92826772	92827066	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037532	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	32303147	32303442	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025635	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	12532931	12533037	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026139	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	2470608	2470707	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031277	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	16189676	16189782	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027752	NOVEL	miRNA	ENSCJAG00000027752	chromosome:C_jacchus3.2.1:17:1:74750902:1	27707664	27707735	R	<no descrition>
ENSCJAG00000027523	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	41100290	41100396	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037016	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	240724	240818	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030578	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:15:1:98464013:1	40246100	40246311	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000031930	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	188891097	188891203	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030603	NOVEL	miRNA	ENSCJAG00000030603	chromosome:C_jacchus3.2.1:1:1:210400635:1	168646910	168647025	R	<no descrition>
ENSCJAG00000025200	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:8:1:128169293:1	56903586	56903720	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000038056	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	150820190	150820486	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028079	NOVEL	miRNA	ENSCJAG00000028079	chromosome:C_jacchus3.2.1:6:1:158406734:1	23286464	23286548	R	<no descrition>
ENSCJAG00000033221	NOVEL	snoRNA	snoMe28S-Am2634	chromosome:C_jacchus3.2.1:9:1:124281992:1	87657436	87657529	R	Small nucleolar RNA Me28S-Am2634 [Source:RFAM;Acc:RF00537]
ENSCJAG00000027152	NOVEL	miRNA	ENSCJAG00000027152	chromosome:C_jacchus3.2.1:3:1:190850796:1	80985041	80985107	D	<no descrition>
ENSCJAG00000036284	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	83276440	83276734	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032327	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	85286002	85286108	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030026	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	89410388	89410494	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024468	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:7:1:155834243:1	33181428	33181555	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000033525	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	50606587	50606731	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025630	NOVEL	miRNA	ENSCJAG00000025630	chromosome:C_jacchus3.2.1:11:1:130397257:1	19826794	19826881	R	<no descrition>
ENSCJAG00000025451	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	53654684	53654797	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025432	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	35585347	35585452	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023553	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	99981221	99981327	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032888	NOVEL	snoRNA	SNORA61	chromosome:C_jacchus3.2.1:19:1:49578535:1	16395445	16395581	D	Small nucleolar RNA SNORA61 [Source:RFAM;Acc:RF00420]
ENSCJAG00000031080	NOVEL	miRNA	ENSCJAG00000031080	chromosome:C_jacchus3.2.1:10:1:132174527:1	126943441	126943538	D	<no descrition>
ENSCJAG00000037846	NOVEL	miRNA	ENSCJAG00000037846	chromosome:C_jacchus3.2.1:5:1:159171411:1	21475993	21476083	R	<no descrition>
ENSCJAG00000027160	NOVEL	snoRNA	SNORA61	chromosome:C_jacchus3.2.1:8:1:128169293:1	123339079	123339207	D	Small nucleolar RNA SNORA61 [Source:RFAM;Acc:RF00420]
ENSCJAG00000036510	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	62344500	62344793	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024838	NOVEL	miRNA	ENSCJAG00000024838	chromosome:C_jacchus3.2.1:16:1:96796970:1	16731620	16731728	D	<no descrition>
ENSCJAG00000036734	NOVEL	miRNA	ENSCJAG00000036734	chromosome:C_jacchus3.2.1:1:1:210400635:1	14615315	14615388	R	<no descrition>
ENSCJAG00000037593	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285101.1:1:151588:1	61819	61924	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027962	NOVEL	snoRNA	SNORA23	chromosome:C_jacchus3.2.1:11:1:130397257:1	72863907	72864088	D	Small nucleolar RNA SNORA23 [Source:RFAM;Acc:RF00319]
ENSCJAG00000025157	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	39253616	39253756	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033122	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	122276428	122276523	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024065	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	76340464	76340570	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035340	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	76051418	76051552	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026283	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:15:1:98464013:1	68974864	68975045	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000028848	NOVEL	snoRNA	SNORA77	chromosome:C_jacchus3.2.1:1:1:210400635:1	184563263	184563390	D	Small nucleolar RNA SNORA77 [Source:RFAM;Acc:RF00599]
ENSCJAG00000027780	NOVEL	miRNA	ENSCJAG00000027780	chromosome:C_jacchus3.2.1:10:1:132174527:1	126971658	126971734	D	<no descrition>
ENSCJAG00000026167	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	74437013	74437121	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027416	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	5114658	5114758	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034144	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	132437784	132437902	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024752	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	66140853	66140956	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032229	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	66991957	66992052	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029712	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:22:1:49145316:1	20592071	20592211	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023963	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	50044719	50044824	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027810	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	11993512	11993629	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035275	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:13:1:117903854:1	7775637	7775700	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000024087	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	31832893	31832999	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031468	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	40170182	40170303	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024961	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	90296550	90296651	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025774	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	75588844	75588950	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037553	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286235.1:1:66685:1	32728	32831	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036830	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	59242320	59242618	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036286	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	99773681	99773978	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028229	NOVEL	snoRNA	SNORD41	chromosome:C_jacchus3.2.1:22:1:49145316:1	11896514	11896583	R	Small nucleolar RNA SNORD41 [Source:RFAM;Acc:RF00588]
ENSCJAG00000031442	NOVEL	snoRNA	SNORA16	chromosome:C_jacchus3.2.1:4:1:171630274:1	34301877	34302009	R	Small nucleolar RNA SNORA16B/SNORA16A family [Source:RFAM;Acc:RF00190]
ENSCJAG00000024826	NOVEL	miRNA	ENSCJAG00000024826	chromosome:C_jacchus3.2.1:1:1:210400635:1	6514511	6514602	D	<no descrition>
ENSCJAG00000031469	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	75932765	75932871	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025987	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	181516574	181516689	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036831	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285005.1:1:149847:1	39771	39889	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024463	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	34794903	34795066	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026833	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1301686	1301767	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000027382	NOVEL	miRNA	ENSCJAG00000027382	chromosome:C_jacchus3.2.1:X:1:142054208:1	103088061	103088140	D	<no descrition>
ENSCJAG00000034201	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	64515693	64515918	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000027598	NOVEL	miRNA	ENSCJAG00000027598	chromosome:C_jacchus3.2.1:1:1:210400635:1	4905956	4906043	R	<no descrition>
ENSCJAG00000036668	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28970797	28971093	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028625	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	51876382	51876518	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027340	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	113864538	113864641	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026499	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:22:1:49145316:1	27532501	27532638	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034361	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	100041664	100041758	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025336	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:7:1:155834243:1	101039902	101040093	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000030969	NOVEL	snoRNA	SCARNA15	chromosome:C_jacchus3.2.1:5:1:159171411:1	37408397	37408523	D	Small Cajal body specific RNA 15 [Source:RFAM;Acc:RF00426]
ENSCJAG00000024771	NOVEL	miRNA	ENSCJAG00000024771	chromosome:C_jacchus3.2.1:17:1:74750902:1	59680481	59680573	D	<no descrition>
ENSCJAG00000036658	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	8579097	8579393	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031152	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	71783705	71783804	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028579	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	130001748	130001851	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035806	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	101544514	101544805	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029995	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	6137096	6137199	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028610	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	26623537	26623638	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025686	NOVEL	snoRNA	SNORD111	chromosome:C_jacchus3.2.1:20:1:44557958:1	27851887	27851977	R	Small nucleolar RNA SNORD111 [Source:RFAM;Acc:RF00611]
ENSCJAG00000037177	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	32398533	32398829	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032287	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	136531106	136531212	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031236	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	126856001	126856071	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000032125	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	134398132	134398238	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029361	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	90491874	90491975	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033550	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	80871648	80871754	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031876	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	182859455	182859557	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033287	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	75831165	75831270	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036199	NOVEL	miRNA	ENSCJAG00000036199	chromosome:C_jacchus3.2.1:6:1:158406734:1	109192893	109192982	D	<no descrition>
ENSCJAG00000029362	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	90637258	90637364	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024909	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	102995073	102995189	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026308	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	52761321	52761430	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035697	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	38470203	38470497	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026194	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126853312	126853388	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000026304	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	67977320	67977426	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029202	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:2:1:204313951:1	43423047	43423183	R	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000034887	NOVEL	snoRNA	ACA64	chromosome:C_jacchus3.2.1:12:1:121768101:1	14864577	14864703	D	Small nucleolar RNA ACA64 [Source:RFAM;Acc:RF01225]
ENSCJAG00000037214	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	14797990	14798285	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037953	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285170.1:1:13237:1	10415	10518	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031782	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:18:1:47448759:1	10221942	10222042	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000026665	NOVEL	miRNA	ENSCJAG00000026665	chromosome:C_jacchus3.2.1:10:1:132174527:1	126943754	126943836	D	<no descrition>
ENSCJAG00000037684	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	95284481	95284773	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033750	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:15:1:98464013:1	2578995	2579111	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000024980	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	130428376	130428707	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033437	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	40572409	40572512	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036547	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285330.1:1:19875:1	9706	9807	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037446	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	155419812	155420107	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035949	NOVEL	miRNA	ENSCJAG00000035949	chromosome:C_jacchus3.2.1:6:1:158406734:1	54866499	54866581	D	<no descrition>
ENSCJAG00000026963	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	85079212	85079306	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030964	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	152562585	152562693	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032358	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	84497873	84497974	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026933	NOVEL	snoRNA	SNORA4	chromosome:C_jacchus3.2.1:8:1:128169293:1	17850524	17850668	R	Small nucleolar RNA SNORA4 [Source:RFAM;Acc:RF00394]
ENSCJAG00000034240	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	86473066	86473164	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033815	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	188579340	188579436	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028151	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	97978170	97978283	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037819	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	93254092	93254385	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025369	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	15589984	15590087	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030615	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	82984323	82984428	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037829	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	16423738	16424034	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034754	NOVEL	miRNA	ENSCJAG00000034754	chromosome:C_jacchus3.2.1:12:1:121768101:1	9776318	9776392	R	<no descrition>
ENSCJAG00000030220	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	205966466	205966606	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029496	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	55246499	55246662	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026812	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	25364316	25364647	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032391	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	4329719	4329822	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026262	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	12387544	12387650	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027880	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	9021262	9021366	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026190	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	96560719	96560813	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030406	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	80713577	80713740	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027357	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:X:1:142054208:1	103993758	103993889	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000031549	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	105474235	105474346	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026224	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	42113072	42113180	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025123	NOVEL	miRNA	ENSCJAG00000025123	chromosome:C_jacchus3.2.1:12:1:121768101:1	100169291	100169397	R	<no descrition>
ENSCJAG00000028370	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:3:1:190850796:1	181412999	181413156	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000024905	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	28187358	28187476	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028968	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	69737295	69737401	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034718	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	96144734	96144829	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035832	NOVEL	miRNA	ENSCJAG00000035832	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	202363	202457	D	<no descrition>
ENSCJAG00000035570	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	87923122	87923416	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029641	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	15574829	15574978	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027679	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	17486738	17486844	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030258	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	65873545	65873652	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035751	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	28029408	28029704	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027322	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	22005836	22005999	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030338	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	5877652	5877758	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030720	NOVEL	snoRNA	SNORD50	chromosome:C_jacchus3.2.1:9:1:124281992:1	100643633	100643702	R	Small nucleolar RNA SNORD50 [Source:RFAM;Acc:RF00278]
ENSCJAG00000025138	NOVEL	miRNA	ENSCJAG00000025138	chromosome:C_jacchus3.2.1:2:1:204313951:1	72311928	72312022	R	<no descrition>
ENSCJAG00000034370	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:20:1:44557958:1	3707780	3707918	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027947	NOVEL	miRNA	ENSCJAG00000027947	chromosome:C_jacchus3.2.1:22:1:49145316:1	9970835	9970919	D	<no descrition>
ENSCJAG00000026972	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	137220838	137220939	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036743	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	58220934	58221035	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028905	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	95013959	95014067	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037664	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	37425648	37425944	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027682	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	58773854	58773964	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027141	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	61881212	61881318	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026084	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	21527901	21528001	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036893	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	17128583	17128879	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037249	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	60979515	60979811	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026247	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:4:1:171630274:1	121621313	121621496	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000030416	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	60459756	60460035	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026066	NOVEL	snoRNA	SNORA22	chromosome:C_jacchus3.2.1:17:1:74750902:1	56984337	56984470	R	Small nucleolar RNA SNORA22 [Source:RFAM;Acc:RF00414]
ENSCJAG00000029391	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	65989098	65989389	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032797	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:14:1:108792865:1	20799094	20799254	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029921	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	96140941	96141044	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035919	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	110062015	110062318	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035338	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	86210548	86210650	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024764	NOVEL	snoRNA	SCARNA18	chromosome:C_jacchus3.2.1:1:1:210400635:1	185473684	185473766	D	small Cajal body-specific RNA 18 [Source:RFAM;Acc:RF00283]
ENSCJAG00000033466	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	179116867	179116969	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029691	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:22:1:49145316:1	2518531	2518622	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000026517	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	17338119	17338229	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029469	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:17:1:74750902:1	72307103	72307234	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000025809	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	10719235	10719373	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028212	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	136001754	136001859	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037139	NOVEL	miRNA	ENSCJAG00000037139	chromosome:C_jacchus3.2.1:8:1:128169293:1	10713336	10713434	D	<no descrition>
ENSCJAG00000023945	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	43916105	43916206	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025924	NOVEL	miRNA	ENSCJAG00000025924	chromosome:C_jacchus3.2.1:6:1:158406734:1	115201463	115201529	D	<no descrition>
ENSCJAG00000031256	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	10773389	10773493	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037133	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286296.1:1:32287:1	29884	29990	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033366	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	24993038	24993144	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034475	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	23513912	23514018	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023661	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	37971593	37971711	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036994	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	54568296	54568590	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026661	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	805352	805458	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027658	NOVEL	snoRNA	SNORD77	chromosome:C_jacchus3.2.1:10:1:132174527:1	42157726	42157790	D	Small nucleolar RNA SNORD77 [Source:RFAM;Acc:RF00591]
ENSCJAG00000030702	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	37867758	37867898	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035564	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	116375542	116375636	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029348	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	117308750	117308856	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034340	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	7476718	7476819	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025037	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	38002627	38002790	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031845	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	11043548	11043649	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028785	NOVEL	snoRNA	SNORA77	chromosome:C_jacchus3.2.1:6:1:158406734:1	35444515	35444626	D	Small nucleolar RNA SNORA77 [Source:RFAM;Acc:RF00599]
ENSCJAG00000025312	NOVEL	miRNA	ENSCJAG00000025312	chromosome:C_jacchus3.2.1:18:1:47448759:1	39809050	39809105	D	<no descrition>
ENSCJAG00000029018	NOVEL	miRNA	ENSCJAG00000029018	chromosome:C_jacchus3.2.1:10:1:132174527:1	30385021	30385133	R	<no descrition>
ENSCJAG00000036184	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	63803567	63803863	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036357	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	62284436	62284731	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026832	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	49126989	49127111	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026903	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	32999761	32999861	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030508	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	51597094	51597198	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026983	NOVEL	snoRNA	SNORA4	chromosome:C_jacchus3.2.1:15:1:98464013:1	8383870	8384007	D	Small nucleolar RNA SNORA4 [Source:RFAM;Acc:RF00394]
ENSCJAG00000036693	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	80620879	80621172	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037312	NOVEL	miRNA	ENSCJAG00000037312	chromosome:C_jacchus3.2.1:12:1:121768101:1	48700267	48700351	R	<no descrition>
ENSCJAG00000029247	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	149426533	149426696	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026582	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	69516507	69516633	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029839	NOVEL	miRNA	ENSCJAG00000029839	chromosome:C_jacchus3.2.1:1:1:210400635:1	64832157	64832245	D	<no descrition>
ENSCJAG00000034015	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	5737387	5737490	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026839	NOVEL	miRNA	ENSCJAG00000026839	chromosome:C_jacchus3.2.1:5:1:159171411:1	83879210	83879295	R	<no descrition>
ENSCJAG00000032826	NOVEL	miRNA	ENSCJAG00000032826	chromosome:C_jacchus3.2.1:8:1:128169293:1	37823628	37823724	R	<no descrition>
ENSCJAG00000027104	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	82605086	82605226	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028356	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	119091362	119091480	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024112	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	914447	914568	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034273	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:12:1:121768101:1	61078981	61079097	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035281	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	208048765	208048905	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030654	NOVEL	miRNA	ENSCJAG00000030654	chromosome:C_jacchus3.2.1:1:1:210400635:1	39713699	39713786	D	<no descrition>
ENSCJAG00000026646	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	50205834	50205936	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032816	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	61882892	61882998	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032013	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	39781855	39781953	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028488	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	34286150	34286251	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028553	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	30058531	30058636	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031105	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	37732048	37732146	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029233	NOVEL	miRNA	ENSCJAG00000029233	chromosome:C_jacchus3.2.1:17:1:74750902:1	10361773	10361866	R	<no descrition>
ENSCJAG00000027903	NOVEL	miRNA	ENSCJAG00000027903	chromosome:C_jacchus3.2.1:10:1:132174527:1	127513632	127513767	R	<no descrition>
ENSCJAG00000036701	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	4986407	4986703	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035524	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	97279820	97280118	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028330	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:21:1:50472720:1	42132065	42132168	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033192	NOVEL	snoRNA	SNORA61	chromosome:C_jacchus3.2.1:4:1:171630274:1	14705921	14706021	D	Small nucleolar RNA SNORA61 [Source:RFAM;Acc:RF00420]
ENSCJAG00000026834	NOVEL	snoRNA	SNORD95	chromosome:C_jacchus3.2.1:1:1:210400635:1	86508755	86508822	R	Small nucleolar RNA SNORD95 [Source:RFAM;Acc:RF00189]
ENSCJAG00000037800	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	32438970	32439266	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024555	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	135712505	135712620	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029697	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:2:1:204313951:1	137349418	137349606	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000028973	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	83954723	83954835	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037260	NOVEL	snRNA	U2	scaffold:C_jacchus3.2.1:GL286260.1:1:38501:1	25766	25956	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000028620	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	61776	61937	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035378	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	7702574	7702673	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035940	NOVEL	miRNA	ENSCJAG00000035940	scaffold:C_jacchus3.2.1:GL284888.1:1:14184:1	10878	10977	D	<no descrition>
ENSCJAG00000035433	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	28274906	28275012	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037990	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL284884.1:1:10962:1	200	496	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034291	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	120792509	120792622	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029573	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	15965758	15965868	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026415	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	22989403	22989508	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028736	KNOWN	misc_RNA	Telomerase-vert	chromosome:C_jacchus3.2.1:17:1:74750902:1	9161751	9162187	D	Vertebrate telomerase RNA [Source:RFAM;Acc:RF00024]
ENSCJAG00000036368	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	137912623	137912917	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025504	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	69951004	69951144	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029719	NOVEL	snoRNA	SNORA72	chromosome:C_jacchus3.2.1:7:1:155834243:1	128687198	128687319	R	Small nucleolar RNA SNORA72 [Source:RFAM;Acc:RF00139]
ENSCJAG00000026117	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	111924730	111924870	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037741	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285015.1:1:77026:1	39298	39593	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036899	NOVEL	miRNA	ENSCJAG00000036899	chromosome:C_jacchus3.2.1:X:1:142054208:1	138151333	138151435	D	<no descrition>
ENSCJAG00000029609	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	58712089	58712191	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030779	NOVEL	miRNA	ENSCJAG00000030779	chromosome:C_jacchus3.2.1:X:1:142054208:1	32494984	32495106	D	<no descrition>
ENSCJAG00000026906	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	164478666	164478827	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023559	NOVEL	snoRNA	SNORA62	chromosome:C_jacchus3.2.1:17:1:74750902:1	69888160	69888310	D	Small nucleolar RNA SNORA62/SNORA6 family [Source:RFAM;Acc:RF00091]
ENSCJAG00000030008	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	19551020	19551321	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029025	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	48411417	48411534	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029498	NOVEL	miRNA	ENSCJAG00000029498	chromosome:C_jacchus3.2.1:8:1:128169293:1	111827170	111827263	R	<no descrition>
ENSCJAG00000037567	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	105885197	105885490	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027961	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:9:1:124281992:1	26295435	26295563	R	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000028313	NOVEL	miRNA	ENSCJAG00000028313	chromosome:C_jacchus3.2.1:8:1:128169293:1	32939691	32939782	R	<no descrition>
ENSCJAG00000023475	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	51468452	51468558	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037576	NOVEL	miRNA	ENSCJAG00000037576	chromosome:C_jacchus3.2.1:6:1:158406734:1	158267916	158268003	D	<no descrition>
ENSCJAG00000036909	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	151449793	151450095	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030180	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	47777274	47777384	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024919	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	110616010	110616110	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025072	NOVEL	miRNA	ENSCJAG00000025072	chromosome:C_jacchus3.2.1:18:1:47448759:1	10090942	10091020	D	<no descrition>
ENSCJAG00000036838	NOVEL	miRNA	ENSCJAG00000036838	chromosome:C_jacchus3.2.1:13:1:117903854:1	26635627	26635708	R	<no descrition>
ENSCJAG00000038112	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	25764440	25764735	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023461	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	31636861	31636962	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024491	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	7347230	7347370	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023840	NOVEL	miRNA	ENSCJAG00000023840	chromosome:C_jacchus3.2.1:14:1:108792865:1	48250445	48250522	D	<no descrition>
ENSCJAG00000029079	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	37641896	37642035	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027890	NOVEL	snoRNA	SNORA21	chromosome:C_jacchus3.2.1:19:1:49578535:1	3350499	3350634	D	Small nucleolar RNA SNORA21 [Source:RFAM;Acc:RF00412]
ENSCJAG00000037237	NOVEL	miRNA	ENSCJAG00000037237	chromosome:C_jacchus3.2.1:6:1:158406734:1	150232958	150233051	R	<no descrition>
ENSCJAG00000032903	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16355886	16355992	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024917	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	36289081	36289176	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033445	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	21051754	21051872	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023799	NOVEL	snoRNA	SNORA1	chromosome:C_jacchus3.2.1:6:1:158406734:1	118641498	118641638	R	Small nucleolar RNA SNORA1 [Source:RFAM;Acc:RF00408]
ENSCJAG00000030378	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	99051391	99051497	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030447	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	201824771	201824877	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035870	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL289586.1:1:7367:1	3122	3228	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030062	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	39586325	39586421	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026722	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	90048819	90048925	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035609	NOVEL	miRNA	ENSCJAG00000035609	chromosome:C_jacchus3.2.1:2:1:204313951:1	13026248	13026348	D	<no descrition>
ENSCJAG00000035628	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	57764482	57764780	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025526	NOVEL	miRNA	ENSCJAG00000025526	chromosome:C_jacchus3.2.1:6:1:158406734:1	83489028	83489117	D	<no descrition>
ENSCJAG00000028072	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:15:1:98464013:1	64790920	64791058	R	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000032291	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	94225423	94225529	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026410	NOVEL	miRNA	ENSCJAG00000026410	chromosome:C_jacchus3.2.1:2:1:204313951:1	44406085	44406171	R	<no descrition>
ENSCJAG00000037934	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	198796890	198797183	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023809	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	131742855	131742987	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026223	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	64468696	64468814	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037287	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	108144292	108144588	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035455	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	62133046	62133150	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031232	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	135403668	135403762	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025565	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	63805630	63805945	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028737	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	103155770	103155872	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035603	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	11770578	11770874	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035083	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	41075987	41076092	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036154	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	115620926	115621224	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037143	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL284840.1:1:73735:1	35218	35321	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037085	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	63315317	63315615	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026331	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	46476261	46476373	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029780	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	14172125	14172227	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024860	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	68665198	68665301	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025103	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	18886870	18886983	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025527	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	16209460	16209566	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027624	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	86701633	86701750	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029727	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	15269921	15270045	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031222	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	33604562	33604668	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030792	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:10:1:132174527:1	79465857	79465971	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000028253	NOVEL	miRNA	ENSCJAG00000028253	chromosome:C_jacchus3.2.1:2:1:204313951:1	21625474	21625572	D	<no descrition>
ENSCJAG00000033886	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	11887856	11887957	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024089	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:7:1:155834243:1	135695985	135696148	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028252	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	132061545	132061646	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023853	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	33853739	33853845	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027622	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	12037994	12038112	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024050	NOVEL	miRNA	ENSCJAG00000024050	chromosome:C_jacchus3.2.1:13:1:117903854:1	23481756	23481828	D	<no descrition>
ENSCJAG00000035781	NOVEL	miRNA	ENSCJAG00000035781	chromosome:C_jacchus3.2.1:10:1:132174527:1	61115269	61115404	R	<no descrition>
ENSCJAG00000032385	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126897372	126897442	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000026273	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:16:1:96796970:1	49093215	49093427	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000033090	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	23662847	23662961	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000030129	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	80007614	80007734	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037054	NOVEL	miRNA	ENSCJAG00000037054	chromosome:C_jacchus3.2.1:12:1:121768101:1	23476080	23476163	R	<no descrition>
ENSCJAG00000025066	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	19507783	19507889	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033340	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	79494127	79494230	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038020	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	60621047	60621343	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037801	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL285051.1:1:9327:1	1981	2091	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037476	NOVEL	miRNA	ENSCJAG00000037476	chromosome:C_jacchus3.2.1:12:1:121768101:1	69557571	69557672	D	<no descrition>
ENSCJAG00000024827	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	27091611	27091752	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000038081	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	54643601	54643897	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026319	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	53828554	53828668	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033040	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	83430435	83430536	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037933	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	26087063	26087365	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029684	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	6372718	6372816	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035533	NOVEL	miRNA	ENSCJAG00000035533	chromosome:C_jacchus3.2.1:5:1:159171411:1	114259080	114259158	R	<no descrition>
ENSCJAG00000033312	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	1490379	1490479	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034967	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	10838560	10838666	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037238	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:9:1:124281992:1	38361717	38361828	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036777	NOVEL	miRNA	ENSCJAG00000036777	chromosome:C_jacchus3.2.1:16:1:96796970:1	66417895	66417979	R	<no descrition>
ENSCJAG00000031719	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	135621270	135621365	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030836	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	53460396	53460559	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026004	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	1568159	1568442	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033538	NOVEL	snoRNA	SNORD88	chromosome:C_jacchus3.2.1:22:1:49145316:1	42635384	42635474	R	Small nucleolar RNA SNORD88 [Source:RFAM;Acc:RF00604]
ENSCJAG00000024668	NOVEL	miRNA	ENSCJAG00000024668	chromosome:C_jacchus3.2.1:22:1:49145316:1	1514407	1514487	R	<no descrition>
ENSCJAG00000034942	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	53646179	53646286	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024381	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	11422885	11422991	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029504	NOVEL	snoRNA	SNORA66	chromosome:C_jacchus3.2.1:11:1:130397257:1	60274931	60275063	D	Small nucleolar RNA SNORA66 [Source:RFAM;Acc:RF00155]
ENSCJAG00000034569	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	99306323	99306419	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032133	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:12:1:121768101:1	50619126	50619187	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000024733	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	99705887	99705993	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027223	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	51151580	51151720	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027035	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	27335243	27335377	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033029	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	130690770	130690835	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036591	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	136686630	136686926	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026411	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	101349790	101349895	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035995	NOVEL	miRNA	ENSCJAG00000035995	chromosome:C_jacchus3.2.1:2:1:204313951:1	63423275	63423366	R	<no descrition>
ENSCJAG00000033368	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	65758714	65758805	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030982	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	104969616	104969930	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035712	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	38461138	38461434	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027702	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	112381168	112381274	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026521	NOVEL	miRNA	ENSCJAG00000026521	chromosome:C_jacchus3.2.1:4:1:171630274:1	96480172	96480271	D	<no descrition>
ENSCJAG00000031111	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	113668596	113668691	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024792	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	39042364	39042476	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037489	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	105576657	105576964	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032974	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	124058063	124058148	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026550	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	94433458	94433562	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034609	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	67052222	67052320	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037994	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	44884436	44884731	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037100	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	108615517	108615809	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028452	NOVEL	snoRNA	SNORA56	chromosome:C_jacchus3.2.1:X:1:142054208:1	141158238	141158365	D	Small nucleolar RNA SNORA56 [Source:RFAM;Acc:RF00417]
ENSCJAG00000036149	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	122944669	122944964	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036104	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	115202606	115202902	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029235	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1153869	1153960	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000035849	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	92978896	92979201	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026558	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	74369253	74369365	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025278	NOVEL	miRNA	ENSCJAG00000025278	chromosome:C_jacchus3.2.1:10:1:132174527:1	126984136	126984214	D	<no descrition>
ENSCJAG00000023607	NOVEL	miRNA	ENSCJAG00000023607	chromosome:C_jacchus3.2.1:16:1:96796970:1	81990245	81990333	R	<no descrition>
ENSCJAG00000031251	NOVEL	snoRNA	ACA64	chromosome:C_jacchus3.2.1:11:1:130397257:1	16977803	16977930	R	Small nucleolar RNA ACA64 [Source:RFAM;Acc:RF01225]
ENSCJAG00000034532	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	11861769	11861872	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037190	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	11435358	11435651	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036369	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	123816360	123816652	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036238	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	3966219	3966515	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033268	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	49207510	49207618	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024558	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	5051485	5051597	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027353	NOVEL	miRNA	ENSCJAG00000027353	chromosome:C_jacchus3.2.1:2:1:204313951:1	31522364	31522464	R	<no descrition>
ENSCJAG00000025643	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:13:1:117903854:1	94060514	94060711	R	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000033935	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	15061793	15061895	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031455	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	11268176	11268282	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030987	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	3836398	3836516	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031432	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	129443049	129443153	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034379	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	36823340	36823443	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036935	NOVEL	miRNA	ENSCJAG00000036935	chromosome:C_jacchus3.2.1:7:1:155834243:1	85770409	85770501	R	<no descrition>
ENSCJAG00000036463	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	114966547	114966843	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028068	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	53069846	53069952	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027977	NOVEL	miRNA	ENSCJAG00000027977	chromosome:C_jacchus3.2.1:10:1:132174527:1	126793520	126793613	D	<no descrition>
ENSCJAG00000027452	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	75637351	75637468	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037661	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	65745360	65745653	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024897	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	45308937	45309043	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036803	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	186553206	186553497	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025721	NOVEL	miRNA	ENSCJAG00000025721	chromosome:C_jacchus3.2.1:10:1:132174527:1	126966022	126966112	D	<no descrition>
ENSCJAG00000033932	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:X:1:142054208:1	137896577	137896717	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000028176	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:13:1:117903854:1	96720821	96720951	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000036119	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	27480743	27481037	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030316	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	119746058	119746175	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025574	NOVEL	miRNA	ENSCJAG00000025574	chromosome:C_jacchus3.2.1:4:1:171630274:1	42967706	42967786	D	<no descrition>
ENSCJAG00000036484	NOVEL	miRNA	ENSCJAG00000036484	chromosome:C_jacchus3.2.1:X:1:142054208:1	18371203	18371297	R	<no descrition>
ENSCJAG00000024289	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	17241659	17241821	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035532	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	100001000	100001296	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036452	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288117.1:1:13229:1	2356	2462	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037274	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	94224079	94224376	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032374	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	189959869	189959987	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037502	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	93963056	93963341	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031944	NOVEL	snoRNA	SNORD38	chromosome:C_jacchus3.2.1:7:1:155834243:1	79544052	79544120	D	Small nucleolar RNA SNORD38 [Source:RFAM;Acc:RF00212]
ENSCJAG00000030610	NOVEL	miRNA	ENSCJAG00000030610	chromosome:C_jacchus3.2.1:2:1:204313951:1	152554111	152554207	D	<no descrition>
ENSCJAG00000028337	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	149110179	149110280	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028697	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	39246	39367	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031090	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	94498800	94498961	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023565	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	76077366	76077466	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033923	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:15:1:98464013:1	17232698	17232810	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000034089	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:5:1:159171411:1	10644314	10644442	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000036834	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	129052742	129053037	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025403	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	70033924	70034030	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028110	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	140849132	140849235	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031201	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29557922	29558049	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023689	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126891402	126891477	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000030957	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	73752192	73752295	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027447	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	185028618	185028914	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026712	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	2069188	2069306	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024162	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:12:1:121768101:1	28857555	28857654	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000028284	NOVEL	snoRNA	SCARNA16	chromosome:C_jacchus3.2.1:14:1:108792865:1	54101716	54101900	D	Small Cajal body specific RNA 16 [Source:RFAM;Acc:RF00424]
ENSCJAG00000024197	NOVEL	miRNA	ENSCJAG00000024197	chromosome:C_jacchus3.2.1:6:1:158406734:1	135701871	135702013	R	<no descrition>
ENSCJAG00000036217	NOVEL	miRNA	ENSCJAG00000036217	chromosome:C_jacchus3.2.1:16:1:96796970:1	26772250	26772343	R	<no descrition>
ENSCJAG00000026697	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	2064706	2064805	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028602	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1148283	1148378	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000030203	NOVEL	miRNA	ENSCJAG00000030203	chromosome:C_jacchus3.2.1:6:1:158406734:1	38507625	38507697	R	<no descrition>
ENSCJAG00000033594	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	44680696	44680811	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037412	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	15545	15695	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028448	NOVEL	miRNA	ENSCJAG00000028448	chromosome:C_jacchus3.2.1:10:1:132174527:1	76289740	76289841	D	<no descrition>
ENSCJAG00000027901	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	129246164	129246269	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023648	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:19:1:49578535:1	25838502	25838642	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026341	NOVEL	miRNA	ENSCJAG00000026341	chromosome:C_jacchus3.2.1:14:1:108792865:1	77501433	77501540	R	<no descrition>
ENSCJAG00000029310	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	4519382	4519483	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030810	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:19:1:49578535:1	844549	844672	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000028734	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	12933519	12933620	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028288	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:7:1:155834243:1	86758047	86758161	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000027276	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	76832281	76832568	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000038150	NOVEL	miRNA	ENSCJAG00000038150	chromosome:C_jacchus3.2.1:8:1:128169293:1	25467473	25467566	D	<no descrition>
ENSCJAG00000037089	NOVEL	miRNA	ENSCJAG00000037089	chromosome:C_jacchus3.2.1:18:1:47448759:1	10470798	10470905	D	<no descrition>
ENSCJAG00000024859	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	11784025	11784128	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027543	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	20923	21086	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028574	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	94781028	94781132	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032764	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	12824417	12824511	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037465	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	89061126	89061406	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030325	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	94271004	94271347	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027791	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	12641358	12641467	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029952	NOVEL	snoRNA	SNORD18	chromosome:C_jacchus3.2.1:10:1:132174527:1	8902124	8902195	R	Small nucleolar RNA SNORD18 [Source:RFAM;Acc:RF00093]
ENSCJAG00000037635	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	91648368	91648664	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036691	NOVEL	miRNA	ENSCJAG00000036691	chromosome:C_jacchus3.2.1:11:1:130397257:1	41303861	41303949	R	<no descrition>
ENSCJAG00000035664	NOVEL	snoRNA	snoU83B	scaffold:C_jacchus3.2.1:GL284825.1:1:20775:1	16310	16404	R	Small nucleolar RNA U83B [Source:RFAM;Acc:RF00593]
ENSCJAG00000026456	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	33616558	33616661	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030750	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	22317838	22317941	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025782	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	5530018	5530124	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030975	NOVEL	miRNA	ENSCJAG00000030975	chromosome:C_jacchus3.2.1:8:1:128169293:1	17304883	17304974	D	<no descrition>
ENSCJAG00000037506	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	6990015	6990315	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025624	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	53028731	53028850	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025121	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	149221073	149221167	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023511	NOVEL	miRNA	ENSCJAG00000023511	chromosome:C_jacchus3.2.1:11:1:130397257:1	9009508	9009591	D	<no descrition>
ENSCJAG00000035162	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:15:1:98464013:1	14371182	14371334	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034305	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:16:1:96796970:1	85000631	85000702	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000030795	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	81247592	81247687	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031334	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:9:1:124281992:1	34031177	34031246	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000024822	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	44093017	44093123	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027388	NOVEL	miRNA	ENSCJAG00000027388	chromosome:C_jacchus3.2.1:7:1:155834243:1	60627230	60627280	D	<no descrition>
ENSCJAG00000037803	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	95478305	95478599	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028956	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	3094041	3094146	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027070	NOVEL	snoRNA	SNORA57	chromosome:C_jacchus3.2.1:11:1:130397257:1	118344687	118344834	D	Small nucleolar RNA SNORA57 [Source:RFAM;Acc:RF00191]
ENSCJAG00000028624	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	50728846	50728958	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028416	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	55867611	55867717	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031319	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	24632769	24632875	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038035	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	93532791	93533091	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036502	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	47172849	47173146	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037160	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	60921038	60921332	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027667	NOVEL	miRNA	ENSCJAG00000027667	chromosome:C_jacchus3.2.1:20:1:44557958:1	20908846	20908937	R	<no descrition>
ENSCJAG00000036507	NOVEL	miRNA	ENSCJAG00000036507	chromosome:C_jacchus3.2.1:12:1:121768101:1	73073169	73073260	R	<no descrition>
ENSCJAG00000033731	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	95793058	95793129	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037865	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	3613576	3613872	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035850	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	32291896	32292190	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025942	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	65685453	65685560	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035899	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	20895421	20895716	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031948	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	122053861	122053971	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025039	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	106623141	106623248	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035834	NOVEL	snoRNA	SNORA73	scaffold:C_jacchus3.2.1:GL287761.1:1:4682:1	3827	4029	R	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000030096	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:10:1:132174527:1	28994235	28994386	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000034665	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	84826506	84826618	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028499	NOVEL	miRNA	ENSCJAG00000028499	chromosome:C_jacchus3.2.1:8:1:128169293:1	117862808	117862880	R	<no descrition>
ENSCJAG00000036252	NOVEL	miRNA	ENSCJAG00000036252	chromosome:C_jacchus3.2.1:10:1:132174527:1	107620598	107620694	R	<no descrition>
ENSCJAG00000036472	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	26441584	26441865	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026655	NOVEL	miRNA	ENSCJAG00000026655	chromosome:C_jacchus3.2.1:17:1:74750902:1	661139	661233	D	<no descrition>
ENSCJAG00000026880	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	113169159	113169262	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028999	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:5:1:159171411:1	39832882	39832998	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000025277	NOVEL	miRNA	ENSCJAG00000025277	chromosome:C_jacchus3.2.1:1:1:210400635:1	204826301	204826420	R	<no descrition>
ENSCJAG00000028227	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:7:1:155834243:1	41651439	41651602	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026220	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	25939637	25939695	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034360	NOVEL	miRNA	ENSCJAG00000034360	chromosome:C_jacchus3.2.1:7:1:155834243:1	63831598	63831729	R	<no descrition>
ENSCJAG00000032501	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	129690675	129690780	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036543	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	19227528	19227824	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029842	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	86201281	86201384	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026925	NOVEL	snoRNA	SNORD59	chromosome:C_jacchus3.2.1:9:1:124281992:1	45476362	45476436	R	Small nucleolar RNA SNORD59 [Source:RFAM;Acc:RF00273]
ENSCJAG00000026921	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	43226231	43226336	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035719	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	29275355	29275651	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026085	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	12627832	12627932	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031216	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	87840328	87840429	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025282	NOVEL	miRNA	ENSCJAG00000025282	chromosome:C_jacchus3.2.1:18:1:47448759:1	9634451	9634531	R	<no descrition>
ENSCJAG00000027963	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	129746859	129746972	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031972	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	79164208	79164327	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037548	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	191798394	191798691	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033120	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	15768967	15769070	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028748	NOVEL	miRNA	ENSCJAG00000028748	chromosome:C_jacchus3.2.1:18:1:47448759:1	9193485	9193564	D	<no descrition>
ENSCJAG00000025380	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	149499038	149499141	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028720	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	120015441	120015560	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026632	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	95774739	95774876	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036069	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	116346010	116346305	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029761	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	42819049	42819154	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030177	NOVEL	snoRNA	SNORA75	chromosome:C_jacchus3.2.1:3:1:190850796:1	173986418	173986552	D	Small nucleolar RNA SNORA75 [Source:RFAM;Acc:RF00072]
ENSCJAG00000036741	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	102882	102990	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037531	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285782.1:1:10899:1	3891	4054	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037818	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	16822324	16822620	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029154	NOVEL	miRNA	ENSCJAG00000029154	chromosome:C_jacchus3.2.1:4:1:171630274:1	153827608	153827702	R	<no descrition>
ENSCJAG00000023755	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	981573	981685	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026926	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	171060820	171060929	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029471	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	127184935	127185098	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027817	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:13:1:117903854:1	94429462	94429562	R	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000037543	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	52309389	52309678	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036131	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	1162327	1162623	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027374	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	145703727	145703827	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033430	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	42794266	42794370	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024141	NOVEL	miRNA	ENSCJAG00000024141	chromosome:C_jacchus3.2.1:X:1:142054208:1	114756176	114756222	R	<no descrition>
ENSCJAG00000032175	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	97662074	97662136	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000038105	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	162516	162812	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025561	NOVEL	snoRNA	SNORD94	chromosome:C_jacchus3.2.1:14:1:108792865:1	20382938	20383058	R	Small nucleolar RNA SNORD94 [Source:RFAM;Acc:RF00613]
ENSCJAG00000037807	NOVEL	miRNA	ENSCJAG00000037807	chromosome:C_jacchus3.2.1:6:1:158406734:1	135968078	135968152	R	<no descrition>
ENSCJAG00000035246	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	9886253	9886357	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027349	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	84537760	84537855	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027355	NOVEL	snoRNA	SNORD56	chromosome:C_jacchus3.2.1:5:1:159171411:1	2147091	2147165	D	Small nucleolar RNA SNORD56 [Source:RFAM;Acc:RF00275]
ENSCJAG00000027596	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	132262924	132263026	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027655	NOVEL	miRNA	ENSCJAG00000027655	chromosome:C_jacchus3.2.1:18:1:47448759:1	30104296	30104390	D	<no descrition>
ENSCJAG00000036172	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	148894053	148894346	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032669	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	39937411	39937500	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028525	NOVEL	miRNA	ENSCJAG00000028525	chromosome:C_jacchus3.2.1:6:1:158406734:1	26866076	26866159	R	<no descrition>
ENSCJAG00000037204	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	47764875	47765171	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030802	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	57358071	57358177	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029944	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	98235873	98235975	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035295	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	62206501	62206606	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028219	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	43289917	43290011	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027608	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1140805	1140899	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000029285	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	83211759	83211862	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032123	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:9:1:124281992:1	102190223	102190284	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037357	NOVEL	miRNA	ENSCJAG00000037357	chromosome:C_jacchus3.2.1:1:1:210400635:1	64886066	64886152	D	<no descrition>
ENSCJAG00000037315	NOVEL	miRNA	ENSCJAG00000037315	chromosome:C_jacchus3.2.1:22:1:49145316:1	10552155	10552248	D	<no descrition>
ENSCJAG00000024774	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	35693361	35693499	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030321	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	97305558	97305636	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036163	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	121341310	121341606	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025267	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:21:1:50472720:1	4545718	4545923	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025997	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	4408080	4408182	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035446	NOVEL	snoRNA	SNORA76	chromosome:C_jacchus3.2.1:2:1:204313951:1	141105675	141105754	D	Small nucleolar RNA SNORA76 [Source:RFAM;Acc:RF00598]
ENSCJAG00000028531	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	81383001	81383141	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033928	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	127510833	127510929	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024536	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	82460073	82460179	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024633	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	100889897	100890037	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028627	NOVEL	miRNA	ENSCJAG00000028627	chromosome:C_jacchus3.2.1:4:1:171630274:1	30979111	30979186	D	<no descrition>
ENSCJAG00000036878	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	122513251	122513547	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027504	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	153993674	153993814	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036453	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	96389757	96390053	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032073	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:2:1:204313951:1	43428577	43428639	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000031049	NOVEL	miRNA	ENSCJAG00000031049	chromosome:C_jacchus3.2.1:10:1:132174527:1	17579814	17579888	R	<no descrition>
ENSCJAG00000024549	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	68665599	68665705	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033521	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	148101193	148101300	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030156	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	23154693	23154851	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027913	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	58292151	58292290	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024174	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	124699289	124699407	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037740	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	21536783	21537073	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027119	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:15:1:98464013:1	55479363	55479648	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000034875	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	10138457	10138562	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027102	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	49515944	49516049	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028235	NOVEL	miRNA	ENSCJAG00000028235	chromosome:C_jacchus3.2.1:14:1:108792865:1	23787557	23787666	R	<no descrition>
ENSCJAG00000025868	NOVEL	miRNA	ENSCJAG00000025868	chromosome:C_jacchus3.2.1:7:1:155834243:1	63181482	63181585	R	<no descrition>
ENSCJAG00000037361	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	119040611	119040911	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035560	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	41322669	41322967	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025090	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:2:1:204313951:1	146558664	146558775	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000023742	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	72950669	72950783	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036688	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	135261436	135261732	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035874	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	35214674	35214969	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023887	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	2030673	2030776	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036598	NOVEL	miRNA	ENSCJAG00000036598	chromosome:C_jacchus3.2.1:18:1:47448759:1	36335605	36335689	R	<no descrition>
ENSCJAG00000023593	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	71922147	71922251	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024092	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	78620505	78620623	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038000	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	43834445	43834741	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025430	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	113655436	113655527	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032634	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	71018648	71018754	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023573	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	63284961	63285066	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036879	NOVEL	snoRNA	SCARNA15	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	265138	265243	D	Small Cajal body specific RNA 15 [Source:RFAM;Acc:RF00426]
ENSCJAG00000025666	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	190511679	190511791	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026040	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	36947677	36947775	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028577	NOVEL	miRNA	ENSCJAG00000028577	chromosome:C_jacchus3.2.1:15:1:98464013:1	42748523	42748622	R	<no descrition>
ENSCJAG00000034330	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	34580440	34580536	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029205	NOVEL	miRNA	ENSCJAG00000029205	chromosome:C_jacchus3.2.1:18:1:47448759:1	15864743	15864837	D	<no descrition>
ENSCJAG00000026553	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	53304915	53305215	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024806	NOVEL	miRNA	ENSCJAG00000024806	chromosome:C_jacchus3.2.1:16:1:96796970:1	1002687	1002746	D	<no descrition>
ENSCJAG00000023908	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	34015160	34015268	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027568	NOVEL	miRNA	ENSCJAG00000027568	chromosome:C_jacchus3.2.1:8:1:128169293:1	2888926	2889010	R	<no descrition>
ENSCJAG00000034112	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	1396205	1396298	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027834	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	47008402	47008505	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035229	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	105764478	105764581	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034313	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	21465370	21465486	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025637	NOVEL	miRNA	ENSCJAG00000025637	chromosome:C_jacchus3.2.1:19:1:49578535:1	31417410	31417478	D	<no descrition>
ENSCJAG00000027859	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:12:1:121768101:1	2636878	2637011	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000024302	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	41679829	41679931	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028843	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	40335068	40335180	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036832	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	38430993	38431288	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037574	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285782.1:1:10899:1	6598	6761	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035544	NOVEL	miRNA	ENSCJAG00000035544	chromosome:C_jacchus3.2.1:3:1:190850796:1	49719736	49719823	R	<no descrition>
ENSCJAG00000030608	NOVEL	snoRNA	SNORA58	chromosome:C_jacchus3.2.1:7:1:155834243:1	89018373	89018513	R	Small nucleolar RNA SNORA58 [Source:RFAM;Acc:RF00418]
ENSCJAG00000025271	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	127371348	127371509	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028420	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:18:1:47448759:1	8914952	8915068	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000037637	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	54164175	54164473	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035432	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	21107320	21107422	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027988	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	124180552	124180683	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030941	NOVEL	miRNA	ENSCJAG00000030941	chromosome:C_jacchus3.2.1:9:1:124281992:1	85355859	85355952	D	<no descrition>
ENSCJAG00000030897	NOVEL	miRNA	ENSCJAG00000030897	chromosome:C_jacchus3.2.1:X:1:142054208:1	134465679	134465777	R	<no descrition>
ENSCJAG00000026914	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	104841091	104841197	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024857	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	138829512	138829624	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023706	NOVEL	snoRNA	SNORA58	chromosome:C_jacchus3.2.1:17:1:74750902:1	44820480	44820616	D	Small nucleolar RNA SNORA58 [Source:RFAM;Acc:RF00418]
ENSCJAG00000029042	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	56255636	56255768	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027199	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	53984570	53984676	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038017	NOVEL	miRNA	ENSCJAG00000038017	chromosome:C_jacchus3.2.1:5:1:159171411:1	126383518	126383611	R	<no descrition>
ENSCJAG00000028790	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	5608503	5608583	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032188	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	21216118	21216236	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026343	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	38808529	38808610	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036220	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	50521586	50521881	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035866	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	32665277	32665569	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028481	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:22:1:49145316:1	15854016	15854218	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000033597	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	77668177	77668282	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025882	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	94255454	94255617	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033132	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:12:1:121768101:1	64508881	64508942	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035327	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	137412945	137413049	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036402	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	45703530	45703825	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036871	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	99118939	99119219	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037349	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	114072606	114072906	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028807	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	8775888	8775993	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030538	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:7:1:155834243:1	78408816	78408939	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000031840	NOVEL	miRNA	ENSCJAG00000031840	chromosome:C_jacchus3.2.1:X:1:142054208:1	134326160	134326288	R	<no descrition>
ENSCJAG00000037854	NOVEL	miRNA	ENSCJAG00000037854	chromosome:C_jacchus3.2.1:16:1:96796970:1	29495580	29495659	D	<no descrition>
ENSCJAG00000023984	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	48958476	48958582	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030766	NOVEL	snoRNA	SNORA1	chromosome:C_jacchus3.2.1:6:1:158406734:1	108519355	108519487	D	Small nucleolar RNA SNORA1 [Source:RFAM;Acc:RF00408]
ENSCJAG00000034324	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	75355249	75355351	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036348	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	420312	420612	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029318	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	43307205	43307311	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028607	NOVEL	miRNA	ENSCJAG00000028607	chromosome:C_jacchus3.2.1:9:1:124281992:1	28404837	28404947	R	<no descrition>
ENSCJAG00000030892	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	10848159	10848267	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031646	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:4:1:171630274:1	107437962	107438081	R	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000030182	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	45279946	45280052	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036436	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	76328295	76328590	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037339	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL287442.1:1:64216:1	10283	10389	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031632	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	65748667	65748779	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028986	NOVEL	miRNA	ENSCJAG00000028986	chromosome:C_jacchus3.2.1:2:1:204313951:1	11814789	11814872	D	<no descrition>
ENSCJAG00000030640	NOVEL	miRNA	ENSCJAG00000030640	chromosome:C_jacchus3.2.1:20:1:44557958:1	37630923	37630995	R	<no descrition>
ENSCJAG00000025024	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	56102214	56102324	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038048	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	11389471	11389767	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037594	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	41274418	41274711	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036010	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	92379130	92379427	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033399	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	8053889	8053998	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028532	NOVEL	miRNA	ENSCJAG00000028532	chromosome:C_jacchus3.2.1:7:1:155834243:1	26735552	26735630	R	<no descrition>
ENSCJAG00000031746	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	107898309	107898415	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036703	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	27604167	27604445	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037000	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	151539610	151539906	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037240	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	60424899	60425199	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027295	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	79028712	79028878	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028803	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	108856231	108856337	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031940	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	74458468	74458573	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035565	NOVEL	miRNA	ENSCJAG00000035565	chromosome:C_jacchus3.2.1:10:1:132174527:1	40940812	40940920	D	<no descrition>
ENSCJAG00000038126	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286770.1:1:10933:1	7246	7356	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036000	NOVEL	miRNA	ENSCJAG00000036000	scaffold:C_jacchus3.2.1:GL285255.1:1:75766:1	63285	63365	D	<no descrition>
ENSCJAG00000027701	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	82328905	82329009	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025943	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:9:1:124281992:1	83212144	83212223	D	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000008815	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:10:1:132174527:1	100482762	100482896	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000028211	NOVEL	miRNA	ENSCJAG00000028211	chromosome:C_jacchus3.2.1:19:1:49578535:1	27527452	27527548	R	<no descrition>
ENSCJAG00000026149	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	35478179	35478286	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035873	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	6792034	6792329	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024290	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	49760358	49760463	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034777	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	147058173	147058279	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030940	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	1320730	1320842	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028823	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	41452880	41453043	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027211	NOVEL	miRNA	ENSCJAG00000027211	chromosome:C_jacchus3.2.1:2:1:204313951:1	52643016	52643100	D	<no descrition>
ENSCJAG00000029529	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	191344153	191344314	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027394	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	84022580	84022680	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027428	NOVEL	miRNA	ENSCJAG00000027428	chromosome:C_jacchus3.2.1:4:1:171630274:1	30961152	30961254	D	<no descrition>
ENSCJAG00000035516	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	1885126	1885421	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031532	NOVEL	miRNA	ENSCJAG00000031532	chromosome:C_jacchus3.2.1:8:1:128169293:1	25729298	25729369	R	<no descrition>
ENSCJAG00000031121	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	58765438	58765544	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035256	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	59419328	59419428	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037951	NOVEL	miRNA	ENSCJAG00000037951	chromosome:C_jacchus3.2.1:8:1:128169293:1	124521400	124521487	R	<no descrition>
ENSCJAG00000024568	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	43427383	43427489	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035399	NOVEL	miRNA	ENSCJAG00000035399	chromosome:C_jacchus3.2.1:7:1:155834243:1	79064517	79064590	R	<no descrition>
ENSCJAG00000026320	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	29576571	29576690	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027222	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	1278996	1279102	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032349	NOVEL	snoRNA	SNORD27	chromosome:C_jacchus3.2.1:1:1:210400635:1	110602740	110602811	D	Small nucleolar RNA SNORD27 [Source:RFAM;Acc:RF00086]
ENSCJAG00000031591	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	45002419	45002520	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026083	NOVEL	miRNA	ENSCJAG00000026083	chromosome:C_jacchus3.2.1:17:1:74750902:1	50573336	50573428	R	<no descrition>
ENSCJAG00000031979	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:2:1:204313951:1	10740262	10740387	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000034706	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	41672470	41672558	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029539	NOVEL	miRNA	ENSCJAG00000029539	chromosome:C_jacchus3.2.1:6:1:158406734:1	143846408	143846490	D	<no descrition>
ENSCJAG00000025317	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	47251482	47251588	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033671	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	4932673	4932756	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037006	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	68687278	68687574	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037620	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285881.1:1:21559:1	3572	3678	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029637	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	38253036	38253142	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037836	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	2364166	2364462	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025623	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	42780353	42780465	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027564	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	43075425	43075543	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037989	NOVEL	miRNA	ENSCJAG00000037989	chromosome:C_jacchus3.2.1:5:1:159171411:1	76256	76335	R	<no descrition>
ENSCJAG00000024401	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	109162578	109162679	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030274	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	114738480	114738586	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025654	NOVEL	miRNA	ENSCJAG00000025654	chromosome:C_jacchus3.2.1:6:1:158406734:1	155464548	155464615	R	<no descrition>
ENSCJAG00000031130	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:2:1:204313951:1	186282626	186282689	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000023930	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	94770199	94770305	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026959	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	76512274	76512412	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027531	NOVEL	miRNA	ENSCJAG00000027531	chromosome:C_jacchus3.2.1:10:1:132174527:1	128973789	128973874	D	<no descrition>
ENSCJAG00000029003	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	161499534	161499640	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024854	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	149739049	149739155	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029430	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:1:1:210400635:1	70133483	70133611	D	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000024115	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	38984636	38984742	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035907	NOVEL	snoRNA	SNORA43	scaffold:C_jacchus3.2.1:GL285185.1:1:51406:1	22906	23043	D	Small nucleolar RNA SNORA43 [Source:RFAM;Acc:RF00416]
ENSCJAG00000030075	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	32552321	32552589	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027117	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	24040353	24040491	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025708	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	116241269	116241387	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025402	NOVEL	miRNA	ENSCJAG00000025402	chromosome:C_jacchus3.2.1:10:1:132174527:1	126983333	126983416	D	<no descrition>
ENSCJAG00000036355	NOVEL	miRNA	ENSCJAG00000036355	chromosome:C_jacchus3.2.1:20:1:44557958:1	21830333	21830431	R	<no descrition>
ENSCJAG00000025529	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	6638782	6638884	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028404	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	189216567	189216678	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027619	NOVEL	snoRNA	SNORA57	chromosome:C_jacchus3.2.1:8:1:128169293:1	105918200	105918348	D	Small nucleolar RNA SNORA57 [Source:RFAM;Acc:RF00191]
ENSCJAG00000033211	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:18:1:47448759:1	26044369	26044440	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000031955	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	13249182	13249285	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025757	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:2:1:204313951:1	7242333	7242460	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000026586	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	35541984	35542090	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037110	NOVEL	miRNA	ENSCJAG00000037110	chromosome:C_jacchus3.2.1:8:1:128169293:1	93572301	93572367	D	<no descrition>
ENSCJAG00000025479	NOVEL	miRNA	ENSCJAG00000025479	chromosome:C_jacchus3.2.1:1:1:210400635:1	186287865	186287959	D	<no descrition>
ENSCJAG00000026388	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	26301468	26301608	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035980	NOVEL	miRNA	ENSCJAG00000035980	chromosome:C_jacchus3.2.1:15:1:98464013:1	10075069	10075153	R	<no descrition>
ENSCJAG00000023512	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	33714022	33714128	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036414	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	7558513	7558808	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037407	NOVEL	miRNA	ENSCJAG00000037407	chromosome:C_jacchus3.2.1:8:1:128169293:1	91613620	91613794	R	<no descrition>
ENSCJAG00000026265	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	158777252	158777370	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030273	NOVEL	snoRNA	SNORA65	chromosome:C_jacchus3.2.1:1:1:210400635:1	171366055	171366184	R	Small nucleolar RNA SNORA65 [Source:RFAM;Acc:RF00302]
ENSCJAG00000027994	NOVEL	snoRNA	SNORA13	chromosome:C_jacchus3.2.1:2:1:204313951:1	94807057	94807189	R	Small nucleolar RNA SNORA13 [Source:RFAM;Acc:RF00396]
ENSCJAG00000027288	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:22:1:49145316:1	45913144	45913284	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031007	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	112191183	112191284	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036593	NOVEL	miRNA	ENSCJAG00000036593	chromosome:C_jacchus3.2.1:16:1:96796970:1	42809903	42809987	R	<no descrition>
ENSCJAG00000035715	NOVEL	miRNA	ENSCJAG00000035715	chromosome:C_jacchus3.2.1:7:1:155834243:1	57039366	57039433	D	<no descrition>
ENSCJAG00000036526	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	44727594	44727890	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037421	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	64201716	64202011	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032183	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	69484537	69484633	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026124	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	15947276	15947380	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037792	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286464.1:1:259699:1	68500	68603	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023753	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	91771910	91772048	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035171	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	59337137	59337243	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027209	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	61403063	61403153	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023705	NOVEL	miRNA	ENSCJAG00000023705	chromosome:C_jacchus3.2.1:10:1:132174527:1	126979767	126979835	D	<no descrition>
ENSCJAG00000036433	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	91878328	91878433	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024397	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	5862574	5862712	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027921	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	23375985	23376087	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030505	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:11:1:130397257:1	66201040	66201101	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035725	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	142136223	142136319	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023907	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	22361163	22361259	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037479	NOVEL	miRNA	ENSCJAG00000037479	chromosome:C_jacchus3.2.1:5:1:159171411:1	132237186	132237272	R	<no descrition>
ENSCJAG00000025362	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:19:1:49578535:1	3811956	3812070	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000024540	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	163878649	163878755	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029689	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	5107343	5107459	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030434	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	50772555	50772661	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024602	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:1:1:210400635:1	14938458	14938585	R	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000027073	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	2295419	2295521	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037091	NOVEL	miRNA	ENSCJAG00000037091	chromosome:C_jacchus3.2.1:19:1:49578535:1	49196469	49196555	R	<no descrition>
ENSCJAG00000034123	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	88687610	88687722	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024031	NOVEL	miRNA	ENSCJAG00000024031	chromosome:C_jacchus3.2.1:6:1:158406734:1	45206627	45206734	R	<no descrition>
ENSCJAG00000037140	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	101537476	101537770	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034893	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	134717196	134717257	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000028031	NOVEL	snoRNA	SCARNA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	144960421	144960839	D	Small Cajal body-specific RNA 2 [Source:RFAM;Acc:RF01268]
ENSCJAG00000023609	NOVEL	miRNA	ENSCJAG00000023609	chromosome:C_jacchus3.2.1:X:1:142054208:1	134401408	134401535	R	<no descrition>
ENSCJAG00000028102	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:5:1:159171411:1	74273869	74274003	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000037164	NOVEL	miRNA	ENSCJAG00000037164	chromosome:C_jacchus3.2.1:22:1:49145316:1	18641141	18641206	D	<no descrition>
ENSCJAG00000035271	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	154045401	154045499	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027747	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	19071679	19071818	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026386	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	43497058	43497222	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036522	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286706.1:1:8943:1	1840	1958	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036001	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	69347327	69347622	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029468	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	148727252	148727354	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030947	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	75665122	75665222	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024946	NOVEL	miRNA	ENSCJAG00000024946	chromosome:C_jacchus3.2.1:2:1:204313951:1	187501600	187501678	R	<no descrition>
ENSCJAG00000034341	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	112060644	112060749	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037321	NOVEL	miRNA	ENSCJAG00000037321	chromosome:C_jacchus3.2.1:1:1:210400635:1	120506593	120506661	R	<no descrition>
ENSCJAG00000023694	NOVEL	snoRNA	SNORA7	chromosome:C_jacchus3.2.1:10:1:132174527:1	35567780	35567918	D	Small nucleolar RNA SNORA7 [Source:RFAM;Acc:RF00409]
ENSCJAG00000030267	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	43916375	43916482	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037441	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL285948.1:1:31312:1	24548	24643	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035726	NOVEL	miRNA	ENSCJAG00000035726	chromosome:C_jacchus3.2.1:12:1:121768101:1	19858252	19858352	D	<no descrition>
ENSCJAG00000032568	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	115024190	115024294	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035915	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:3:1:190850796:1	37243420	37243463	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000027037	NOVEL	miRNA	ENSCJAG00000027037	chromosome:C_jacchus3.2.1:12:1:121768101:1	37751836	37751930	D	<no descrition>
ENSCJAG00000035658	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	44951201	44951482	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029358	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	30029321	30029428	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036105	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	138076045	138076341	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025331	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	117032384	117032485	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035070	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	89061558	89061664	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026691	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	14637921	14638061	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030842	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:11:1:130397257:1	53158724	53158853	R	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000030082	NOVEL	miRNA	ENSCJAG00000030082	chromosome:C_jacchus3.2.1:10:1:132174527:1	126963831	126963914	D	<no descrition>
ENSCJAG00000035006	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	108058399	108058458	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000034243	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	47416794	47416897	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029189	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	542665	542766	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037477	NOVEL	miRNA	ENSCJAG00000037477	chromosome:C_jacchus3.2.1:12:1:121768101:1	83090831	83090911	R	<no descrition>
ENSCJAG00000024109	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	154014001	154014109	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037681	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	134409676	134409972	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035503	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286344.1:1:14317:1	6766	6860	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031323	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	114498455	114498516	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000027235	NOVEL	miRNA	ENSCJAG00000027235	chromosome:C_jacchus3.2.1:7:1:155834243:1	127734411	127734504	D	<no descrition>
ENSCJAG00000037551	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	36505121	36505398	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028413	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	43586192	43586354	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033532	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	148423664	148423725	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000023497	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	47615833	47615951	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026043	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	3327135	3327253	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025681	NOVEL	miRNA	ENSCJAG00000025681	chromosome:C_jacchus3.2.1:X:1:142054208:1	122447229	122447319	R	<no descrition>
ENSCJAG00000032177	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	112513435	112513553	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034466	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	50203880	50203979	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027324	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:22:1:49145316:1	19701415	19701613	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025373	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	32167498	32167600	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028909	NOVEL	miRNA	ENSCJAG00000028909	chromosome:C_jacchus3.2.1:4:1:171630274:1	10075983	10076076	R	<no descrition>
ENSCJAG00000030032	NOVEL	snoRNA	SNORA32	chromosome:C_jacchus3.2.1:10:1:132174527:1	102546430	102546518	R	Small nucleolar RNA SNORA32 [Source:RFAM;Acc:RF00421]
ENSCJAG00000031421	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:13:1:117903854:1	34135712	34136006	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025007	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	93077411	93077516	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029682	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	88118002	88118110	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036860	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL285632.1:1:12509:1	12048	12144	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025133	NOVEL	snoRNA	SNORD103	chromosome:C_jacchus3.2.1:7:1:155834243:1	65156207	65156291	R	Small nucleolar RNA SNORD103/SNORD85 [Source:RFAM;Acc:RF00188]
ENSCJAG00000024015	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	35015700	35015804	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030929	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	53558107	53558201	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036981	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	98922570	98922866	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023516	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	81078841	81078949	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027847	NOVEL	miRNA	ENSCJAG00000027847	chromosome:C_jacchus3.2.1:10:1:132174527:1	126949308	126949387	D	<no descrition>
ENSCJAG00000026616	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:21:1:50472720:1	50246356	50246520	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025399	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	106104438	106104540	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027524	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1274774	1274855	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000030358	NOVEL	miRNA	ENSCJAG00000030358	chromosome:C_jacchus3.2.1:9:1:124281992:1	55037216	55037335	D	<no descrition>
ENSCJAG00000030171	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	11185840	11185941	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037561	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	18826236	18826531	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037840	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	110403352	110403648	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036811	NOVEL	miRNA	ENSCJAG00000036811	chromosome:C_jacchus3.2.1:7:1:155834243:1	145374117	145374189	R	<no descrition>
ENSCJAG00000026980	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	29878634	29878730	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027480	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	38999494	38999609	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000007225	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	202596714	202596868	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036116	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	35603560	35603856	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024800	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	65369885	65370025	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037394	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	198773254	198773550	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027829	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:11:1:130397257:1	119492034	119492166	R	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000032910	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	97167937	97168032	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035868	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	42488467	42488760	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036145	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	63475062	63475357	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028262	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	155516372	155516472	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031283	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	68288442	68288560	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029206	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	68706322	68706417	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027662	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	55962548	55962688	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027735	NOVEL	miRNA	ENSCJAG00000027735	chromosome:C_jacchus3.2.1:X:1:142054208:1	48481665	48481748	D	<no descrition>
ENSCJAG00000027274	NOVEL	miRNA	ENSCJAG00000027274	chromosome:C_jacchus3.2.1:7:1:155834243:1	106812776	106812861	R	<no descrition>
ENSCJAG00000035953	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	70141838	70142134	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035827	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	124326935	124327043	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029180	NOVEL	snoRNA	SNORA16	chromosome:C_jacchus3.2.1:7:1:155834243:1	62774680	62774814	R	Small nucleolar RNA SNORA16B/SNORA16A family [Source:RFAM;Acc:RF00190]
ENSCJAG00000033039	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	155824520	155824621	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030770	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	39220036	39220154	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036747	NOVEL	miRNA	ENSCJAG00000036747	chromosome:C_jacchus3.2.1:5:1:159171411:1	3456896	3456996	D	<no descrition>
ENSCJAG00000036092	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	16937856	16938148	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028466	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	6881698	6881793	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027136	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	102815505	102815612	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024105	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	12074073	12074176	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037196	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	37503836	37504131	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036465	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	194577549	194577843	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029775	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	9266586	9266687	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024009	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:3:1:190850796:1	123680508	123680638	R	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000036664	NOVEL	miRNA	ENSCJAG00000036664	chromosome:C_jacchus3.2.1:15:1:98464013:1	97111070	97111154	R	<no descrition>
ENSCJAG00000027403	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	31475768	31475874	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036596	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	20877735	20878030	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025049	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	55265154	55265271	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027580	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:20:1:44557958:1	22357910	22358055	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023457	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:9:1:124281992:1	37394573	37394709	R	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000037557	NOVEL	miRNA	ENSCJAG00000037557	chromosome:C_jacchus3.2.1:8:1:128169293:1	81510091	81510167	D	<no descrition>
ENSCJAG00000029250	NOVEL	miRNA	ENSCJAG00000029250	chromosome:C_jacchus3.2.1:10:1:132174527:1	126820099	126820173	D	<no descrition>
ENSCJAG00000027137	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	95109741	95109842	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036541	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:13:1:117903854:1	43527715	43527776	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000031812	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:15:1:98464013:1	18241923	18242048	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000025800	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1148841	1148935	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000029142	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	154611257	154611360	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036401	NOVEL	miRNA	ENSCJAG00000036401	chromosome:C_jacchus3.2.1:4:1:171630274:1	48486312	48486395	R	<no descrition>
ENSCJAG00000034295	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	8782328	8782432	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032928	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	19435597	19435829	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036965	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	73106979	73107275	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024444	NOVEL	miRNA	ENSCJAG00000024444	chromosome:C_jacchus3.2.1:5:1:159171411:1	121125165	121125236	D	<no descrition>
ENSCJAG00000036044	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	133218293	133218613	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026556	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	54617853	54617956	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032942	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	23668893	23668988	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027793	NOVEL	miRNA	ENSCJAG00000027793	chromosome:C_jacchus3.2.1:5:1:159171411:1	124386900	124386978	D	<no descrition>
ENSCJAG00000030952	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	121429299	121429397	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025095	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	14200252	14200358	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037875	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	27763982	27764273	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026176	NOVEL	snoRNA	SCARNA1	chromosome:C_jacchus3.2.1:7:1:155834243:1	61989734	61989899	D	Small Cajal body specific RNA 1 [Source:RFAM;Acc:RF00553]
ENSCJAG00000024678	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	60298610	60298712	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038033	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	11778095	11778391	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024664	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:6:1:158406734:1	147941896	147942056	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037418	NOVEL	miRNA	ENSCJAG00000037418	chromosome:C_jacchus3.2.1:1:1:210400635:1	116514216	116514294	D	<no descrition>
ENSCJAG00000033376	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29556647	29556767	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036028	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	4829761	4830057	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024125	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	97441874	97442014	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029619	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:19:1:49578535:1	6235873	6236077	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000023843	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	24640516	24640633	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036912	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	11311213	11311509	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033253	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	32220884	32220989	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028278	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	65467652	65467753	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025553	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	15167606	15167707	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029773	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	94692096	94692197	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037554	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285149.1:1:97816:1	5154	5309	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028930	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	37015464	37015626	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035656	NOVEL	snoRNA	SNORD30	chromosome:C_jacchus3.2.1:X:1:142054208:1	102531291	102531360	D	Small nucleolar RNA SNORD30 [Source:RFAM;Acc:RF00088]
ENSCJAG00000027714	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	53984346	53984450	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036907	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	5178299	5178550	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037530	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	134498535	134498831	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037155	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	9115785	9116081	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029524	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	80904998	80905116	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035184	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	72603092	72603187	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027270	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	43436993	43437088	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024832	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	133236419	133236525	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037493	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	129027273	129027575	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034796	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	10138589	10138691	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029928	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	31243573	31243713	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026275	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	155318983	155319090	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029380	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	153805883	153805986	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031582	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	45648018	45648130	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025295	NOVEL	miRNA	ENSCJAG00000025295	chromosome:C_jacchus3.2.1:22:1:49145316:1	45044271	45044338	D	<no descrition>
ENSCJAG00000035380	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	55721538	55721639	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036411	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:19:1:49578535:1	48259313	48259417	D	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000025097	NOVEL	snoRNA	SNORA3	chromosome:C_jacchus3.2.1:5:1:159171411:1	27702765	27702898	R	Small nucleolar RNA SNORA3/SNORA45 family [Source:RFAM;Acc:RF00334]
ENSCJAG00000028723	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126833360	126833431	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000024885	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:5:1:159171411:1	24190084	24190204	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000035926	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	62918924	62919219	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035502	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	154567302	154567597	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037700	NOVEL	miRNA	ENSCJAG00000037700	scaffold:C_jacchus3.2.1:GL289004.1:1:6000:1	2201	2286	R	<no descrition>
ENSCJAG00000027548	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	124140232	124140333	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029570	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:8:1:128169293:1	108450946	108451240	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024671	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	68838199	68838300	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026394	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	46228897	46229037	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030913	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	24686323	24686430	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026059	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	76202916	76203017	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023535	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	83132964	83133067	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035114	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:4:1:171630274:1	155847079	155847147	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000025612	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	145070465	145070527	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000024010	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:21:1:50472720:1	10892092	10892226	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000029097	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	61248835	61248945	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034107	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	44411632	44411730	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023866	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	34680808	34680914	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037539	NOVEL	miRNA	ENSCJAG00000037539	chromosome:C_jacchus3.2.1:2:1:204313951:1	164911194	164911253	D	<no descrition>
ENSCJAG00000024475	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	26621855	26621965	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025919	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	58684513	58684653	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027015	NOVEL	miRNA	ENSCJAG00000027015	chromosome:C_jacchus3.2.1:6:1:158406734:1	15845797	15845933	D	<no descrition>
ENSCJAG00000034833	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:8:1:128169293:1	97818410	97818639	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000026540	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	73011173	73011276	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024874	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126843810	126843881	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000029854	NOVEL	miRNA	ENSCJAG00000029854	chromosome:C_jacchus3.2.1:10:1:132174527:1	126957334	126957432	D	<no descrition>
ENSCJAG00000025111	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	132218825	132219114	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030007	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	22293418	22293529	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034448	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	38980531	38980638	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031069	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	71423435	71423525	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031806	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	24367898	24368157	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037905	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	84565411	84565687	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029964	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	45274463	45274568	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033845	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	35220785	35220839	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025405	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	118353619	118353723	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033676	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	61566399	61566517	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037732	NOVEL	miRNA	ENSCJAG00000037732	chromosome:C_jacchus3.2.1:3:1:190850796:1	39893179	39893269	D	<no descrition>
ENSCJAG00000037632	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	7098716	7099012	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036848	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	103504	103610	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030409	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	53404706	53404798	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024840	NOVEL	miRNA	ENSCJAG00000024840	chromosome:C_jacchus3.2.1:7:1:155834243:1	119138189	119138336	R	<no descrition>
ENSCJAG00000031756	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	480613	480716	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024650	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1266044	1266125	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000030348	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	25165519	25165625	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036327	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285905.1:1:65634:1	10628	10736	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036889	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285829.1:1:17908:1	12678	12787	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026708	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	21338647	21338752	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036304	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	7226151	7226444	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027617	NOVEL	miRNA	ENSCJAG00000027617	chromosome:C_jacchus3.2.1:19:1:49578535:1	32260297	32260408	R	<no descrition>
ENSCJAG00000030194	NOVEL	snoRNA	SNORA14	chromosome:C_jacchus3.2.1:2:1:204313951:1	8985471	8985605	D	Small nucleolar RNA SNORA14 [Source:RFAM;Acc:RF00397]
ENSCJAG00000032114	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	15844211	15844311	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024077	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	29067243	29067344	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025776	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	32576335	32576453	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031837	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88705330	88705464	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030189	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	43266004	43266108	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037920	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	134422541	134422837	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026814	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	97549926	97550050	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026656	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	98919817	98919957	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027393	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	59297705	59297806	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026421	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	46398784	46398890	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030471	NOVEL	miRNA	ENSCJAG00000030471	chromosome:C_jacchus3.2.1:10:1:132174527:1	73817455	73817535	R	<no descrition>
ENSCJAG00000029421	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	1322387	1322522	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036091	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	76018034	76018328	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033672	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	111138411	111138517	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026736	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	71671302	71671402	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034088	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	32365146	32365231	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029625	NOVEL	miRNA	ENSCJAG00000029625	chromosome:C_jacchus3.2.1:11:1:130397257:1	121113453	121113547	D	<no descrition>
ENSCJAG00000032292	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	26028282	26028386	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025537	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	18079925	18080028	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028942	NOVEL	miRNA	ENSCJAG00000028942	chromosome:C_jacchus3.2.1:X:1:142054208:1	122082184	122082252	R	<no descrition>
ENSCJAG00000031255	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	121416274	121416412	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031749	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:15:1:98464013:1	9068511	9068803	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026467	NOVEL	miRNA	ENSCJAG00000026467	chromosome:C_jacchus3.2.1:19:1:49578535:1	4685078	4685175	R	<no descrition>
ENSCJAG00000028641	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	110857303	110857402	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026753	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	40179204	40179343	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035479	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	151067665	151067766	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027836	NOVEL	snoRNA	SNORA74	chromosome:C_jacchus3.2.1:14:1:108792865:1	41768761	41768957	R	Small nucleolar RNA SNORA74 [Source:RFAM;Acc:RF00090]
ENSCJAG00000037447	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	160035955	160036237	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033554	NOVEL	miRNA	ENSCJAG00000033554	chromosome:C_jacchus3.2.1:18:1:47448759:1	7503718	7503808	D	<no descrition>
ENSCJAG00000030734	NOVEL	snoRNA	SCARNA20	chromosome:C_jacchus3.2.1:5:1:159171411:1	86784052	86784181	D	Small Cajal body specific RNA 20 [Source:RFAM;Acc:RF00601]
ENSCJAG00000032614	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	61616400	61616507	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037613	NOVEL	miRNA	ENSCJAG00000037613	scaffold:C_jacchus3.2.1:GL286213.1:1:62872:1	22167	22251	D	<no descrition>
ENSCJAG00000023634	NOVEL	miRNA	ENSCJAG00000023634	chromosome:C_jacchus3.2.1:17:1:74750902:1	55876077	55876186	D	<no descrition>
ENSCJAG00000029648	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	10638720	10638826	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035810	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	110583561	110583857	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023759	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	47170685	47170785	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036387	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	148387979	148388274	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031778	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	80182747	80182848	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030260	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	124561466	124561567	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037429	NOVEL	miRNA	ENSCJAG00000037429	chromosome:C_jacchus3.2.1:14:1:108792865:1	53716407	53716486	D	<no descrition>
ENSCJAG00000026172	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	33839786	33839885	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024013	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	96159352	96159515	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035768	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	97127234	97127337	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032576	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	172552258	172552376	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024539	NOVEL	snoRNA	SNORA47	chromosome:C_jacchus3.2.1:2:1:204313951:1	131299009	131299145	D	Small nucleolar RNA SNORA47 [Source:RFAM;Acc:RF01234]
ENSCJAG00000027862	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	75303339	75303484	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034668	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	104361609	104361716	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023726	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	60922037	60922143	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032868	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	78435116	78435212	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023712	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:X:1:142054208:1	52642951	52643078	D	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000037047	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286564.1:1:27474:1	4959	5250	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035820	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	66574435	66574730	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038037	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	36738875	36739170	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035463	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	49396687	49396787	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023538	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:3:1:190850796:1	140800733	140800854	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000036185	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	87168496	87168792	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034142	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	65175353	65175459	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030042	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	39121456	39121547	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030485	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	77916150	77916268	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025280	NOVEL	miRNA	ENSCJAG00000025280	chromosome:C_jacchus3.2.1:7:1:155834243:1	68437094	68437174	D	<no descrition>
ENSCJAG00000036854	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	43538388	43538683	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036788	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL284999.1:1:4395:1	456	594	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023803	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	190835224	190835327	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028997	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	7071150	7071249	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027549	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	3083248	3083358	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036726	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	44866463	44866764	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028081	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:12:1:121768101:1	51945793	51945920	R	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000024575	NOVEL	miRNA	ENSCJAG00000024575	chromosome:C_jacchus3.2.1:5:1:159171411:1	69604422	69604519	R	<no descrition>
ENSCJAG00000034094	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	38607624	38607730	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030519	NOVEL	snoRNA	SNORD77	chromosome:C_jacchus3.2.1:18:1:47448759:1	33120459	33120536	D	Small nucleolar RNA SNORD77 [Source:RFAM;Acc:RF00591]
ENSCJAG00000024956	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	115353255	115353415	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028892	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	25450623	25450729	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036281	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	21685961	21686252	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029730	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	43263530	43263622	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025616	NOVEL	miRNA	ENSCJAG00000025616	chromosome:C_jacchus3.2.1:X:1:142054208:1	122081750	122081829	R	<no descrition>
ENSCJAG00000029779	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	88646869	88647008	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037984	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	8593925	8594221	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033587	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	10665772	10665867	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025153	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	2215923	2216236	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023690	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	31417524	31417627	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029551	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	87783871	87783980	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030456	NOVEL	miRNA	ENSCJAG00000030456	chromosome:C_jacchus3.2.1:17:1:74750902:1	35197901	35198006	R	<no descrition>
ENSCJAG00000023677	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1353563	1353638	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000033205	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	114613653	114613759	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033417	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	105932199	105932317	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038137	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	21335486	21335773	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029914	NOVEL	snoRNA	SCARNA3	chromosome:C_jacchus3.2.1:18:1:47448759:1	31054875	31055015	D	Small Cajal body specific RNA 3 [Source:RFAM;Acc:RF00565]
ENSCJAG00000027066	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:15:1:98464013:1	2188047	2188182	D	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000023830	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1271042	1271122	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000037926	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	31198931	31199221	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030536	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	23839899	23840005	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028933	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	177149952	177150079	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027710	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	71360864	71360974	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036178	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	28495478	28495774	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023629	NOVEL	snoRNA	SNORA62	chromosome:C_jacchus3.2.1:10:1:132174527:1	92630361	92630515	R	Small nucleolar RNA SNORA62/SNORA6 family [Source:RFAM;Acc:RF00091]
ENSCJAG00000029918	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:10:1:132174527:1	122067652	122067842	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000029874	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	40528750	40528856	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032917	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	54393824	54393958	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028833	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	64112341	64112444	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036818	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	97854451	97854741	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033012	NOVEL	snoRNA	snoZ13_snr52	chromosome:C_jacchus3.2.1:1:1:210400635:1	161272970	161273071	R	Small nucleolar RNA Z13/snr52 [Source:RFAM;Acc:RF00335]
ENSCJAG00000029422	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	38079512	38079626	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029799	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:21:1:50472720:1	29087074	29087447	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025275	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	168037466	168037579	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023671	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	37914879	37914974	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037917	NOVEL	miRNA	ENSCJAG00000037917	chromosome:C_jacchus3.2.1:19:1:49578535:1	14063385	14063474	R	<no descrition>
ENSCJAG00000033461	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:7:1:155834243:1	102696210	102696345	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000027507	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	99589695	99589796	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025440	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	140391846	140392002	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037289	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	32414238	32414534	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035795	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	86912497	86912793	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030050	NOVEL	miRNA	ENSCJAG00000030050	chromosome:C_jacchus3.2.1:17:1:74750902:1	69220603	69220686	R	<no descrition>
ENSCJAG00000031851	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	127634303	127634415	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029987	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	31197204	31197312	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027672	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	108431097	108431234	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027182	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126874979	126875053	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000026944	NOVEL	miRNA	ENSCJAG00000026944	chromosome:C_jacchus3.2.1:1:1:210400635:1	78275182	78275254	D	<no descrition>
ENSCJAG00000028230	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	137594524	137594688	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027368	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:10:1:132174527:1	60197743	60197950	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000029598	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	52357556	52357658	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026987	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	111160808	111160910	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030693	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	194132181	194132289	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036047	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	102496963	102497256	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033939	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:6:1:158406734:1	156787490	156787697	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000036159	NOVEL	miRNA	ENSCJAG00000036159	chromosome:C_jacchus3.2.1:13:1:117903854:1	24092935	24093025	R	<no descrition>
ENSCJAG00000025487	NOVEL	miRNA	ENSCJAG00000025487	chromosome:C_jacchus3.2.1:3:1:190850796:1	20094879	20094960	D	<no descrition>
ENSCJAG00000029973	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	39554097	39554206	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031282	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	69993570	69993676	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035696	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	73907107	73907403	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037259	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL289364.1:1:12484:1	219	337	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029903	NOVEL	miRNA	ENSCJAG00000029903	chromosome:C_jacchus3.2.1:1:1:210400635:1	123406492	123406562	R	<no descrition>
ENSCJAG00000024133	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:4:1:171630274:1	32972152	32972269	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000025483	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:16:1:96796970:1	82507906	82508037	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034943	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	23953065	23953203	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031587	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	21571141	21571238	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032728	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	162180888	162181006	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027000	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	13267173	13267482	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000034977	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	63276492	63276597	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038070	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	129818286	129818581	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037514	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	45577425	45577720	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037346	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	13258049	13258345	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024644	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	73843240	73843380	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027799	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	85633215	85633561	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024878	NOVEL	miRNA	ENSCJAG00000024878	chromosome:C_jacchus3.2.1:4:1:171630274:1	30978587	30978655	D	<no descrition>
ENSCJAG00000029405	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	17585390	17585689	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024034	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	62853147	62853249	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034040	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	23419690	23419752	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023892	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	87838525	87838631	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024049	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	151552963	151553100	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032071	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	17339657	17339764	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026692	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	559227	559366	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026519	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	7967537	7967700	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027990	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	65830310	65830415	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028106	NOVEL	miRNA	ENSCJAG00000028106	chromosome:C_jacchus3.2.1:4:1:171630274:1	104194788	104194894	R	<no descrition>
ENSCJAG00000029163	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	124314758	124314868	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024032	NOVEL	miRNA	ENSCJAG00000024032	chromosome:C_jacchus3.2.1:1:1:210400635:1	98267213	98267322	D	<no descrition>
ENSCJAG00000030449	NOVEL	miRNA	ENSCJAG00000030449	chromosome:C_jacchus3.2.1:11:1:130397257:1	47686764	47686873	R	<no descrition>
ENSCJAG00000024177	NOVEL	snoRNA	SNORD77	chromosome:C_jacchus3.2.1:14:1:108792865:1	45396196	45396263	D	Small nucleolar RNA SNORD77 [Source:RFAM;Acc:RF00591]
ENSCJAG00000035056	NOVEL	snoRNA	SNORA28	chromosome:C_jacchus3.2.1:6:1:158406734:1	104547066	104547186	R	Small nucleolar RNA SNORA28 [Source:RFAM;Acc:RF00400]
ENSCJAG00000025842	NOVEL	snoRNA	SNORD26	chromosome:C_jacchus3.2.1:11:1:130397257:1	118550470	118550542	R	Small nucleolar RNA SNORD26 [Source:RFAM;Acc:RF00087]
ENSCJAG00000027019	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	51934061	51934166	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037652	NOVEL	snoRNA	SNORA70	scaffold:C_jacchus3.2.1:GL286465.1:1:90687:1	73275	73409	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000027911	NOVEL	miRNA	ENSCJAG00000027911	chromosome:C_jacchus3.2.1:13:1:117903854:1	72857856	72857966	D	<no descrition>
ENSCJAG00000036198	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	154835422	154835718	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028224	NOVEL	miRNA	ENSCJAG00000028224	chromosome:C_jacchus3.2.1:18:1:47448759:1	8133643	8133721	R	<no descrition>
ENSCJAG00000028845	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	7749840	7749951	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035853	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	106565453	106565742	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024525	NOVEL	snoRNA	SNORD17	chromosome:C_jacchus3.2.1:5:1:159171411:1	23570228	23570464	R	Small nucleolar RNA SNORD17 [Source:RFAM;Acc:RF00567]
ENSCJAG00000029440	NOVEL	miRNA	ENSCJAG00000029440	chromosome:C_jacchus3.2.1:X:1:142054208:1	127675388	127675475	R	<no descrition>
ENSCJAG00000025885	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:22:1:49145316:1	5341578	5341714	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031406	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:1:1:210400635:1	177369352	177369418	R	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000037471	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	16689368	16689664	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027649	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	85698094	85698396	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000038050	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	162725521	162725818	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037005	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL288430.1:1:4594:1	3705	3805	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037610	NOVEL	snoRNA	snoU83B	chromosome:C_jacchus3.2.1:10:1:132174527:1	75484926	75484996	D	Small nucleolar RNA U83B [Source:RFAM;Acc:RF00593]
ENSCJAG00000026538	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	94580639	94580745	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037231	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL288578.1:1:16360:1	7325	7621	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037863	NOVEL	miRNA	ENSCJAG00000037863	chromosome:C_jacchus3.2.1:4:1:171630274:1	121698661	121698718	D	<no descrition>
ENSCJAG00000031931	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	66872561	66872662	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026862	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	138248017	138248135	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033741	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	624472	624578	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037535	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	97364214	97364504	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025588	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	132714414	132714515	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026174	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:4:1:171630274:1	58994022	58994156	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000024146	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	12088167	12088330	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030080	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:5:1:159171411:1	86323499	86323575	D	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000030426	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:10:1:132174527:1	7665675	7665790	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000027456	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:15:1:98464013:1	31865683	31865979	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032457	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:9:1:124281992:1	69878559	69878612	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000027047	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	147023663	147023753	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027637	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:21:1:50472720:1	33251442	33251546	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035554	NOVEL	miRNA	ENSCJAG00000035554	chromosome:C_jacchus3.2.1:13:1:117903854:1	100370233	100370316	D	<no descrition>
ENSCJAG00000035622	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	6788882	6789159	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030040	NOVEL	snoRNA	snoU83B	chromosome:C_jacchus3.2.1:1:1:210400635:1	117870048	117870139	R	Small nucleolar RNA U83B [Source:RFAM;Acc:RF00593]
ENSCJAG00000035402	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	138055669	138055764	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026715	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	89505531	89505632	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034374	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	18906438	18906544	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031507	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	30473701	30473807	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036050	NOVEL	miRNA	ENSCJAG00000036050	chromosome:C_jacchus3.2.1:21:1:50472720:1	20411566	20411671	R	<no descrition>
ENSCJAG00000023818	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	108598952	108599108	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032688	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	27737855	27737961	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037017	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	36772514	36772810	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028749	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	48057041	48057146	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037856	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	128221620	128221916	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030436	NOVEL	miRNA	ENSCJAG00000030436	chromosome:C_jacchus3.2.1:1:1:210400635:1	110628602	110628694	D	<no descrition>
ENSCJAG00000035763	NOVEL	miRNA	ENSCJAG00000035763	chromosome:C_jacchus3.2.1:14:1:108792865:1	14545380	14545469	D	<no descrition>
ENSCJAG00000032365	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	35540965	35541066	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028832	NOVEL	miRNA	ENSCJAG00000028832	chromosome:C_jacchus3.2.1:5:1:159171411:1	61439280	61439381	D	<no descrition>
ENSCJAG00000029259	NOVEL	miRNA	ENSCJAG00000029259	chromosome:C_jacchus3.2.1:15:1:98464013:1	87559362	87559448	R	<no descrition>
ENSCJAG00000037325	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	78926037	78926332	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030859	NOVEL	miRNA	ENSCJAG00000030859	chromosome:C_jacchus3.2.1:12:1:121768101:1	39302958	39303044	R	<no descrition>
ENSCJAG00000030961	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	82938232	82938338	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032514	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	137774165	137774264	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024935	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	63204707	63204807	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029834	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	106363374	106363465	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028047	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	71629195	71629358	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026301	NOVEL	miRNA	ENSCJAG00000026301	chromosome:C_jacchus3.2.1:10:1:132174527:1	57021333	57021412	D	<no descrition>
ENSCJAG00000031771	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	143445804	143445910	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024319	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:13:1:117903854:1	92600716	92600849	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000035901	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	96132331	96132631	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026071	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	107706330	107706448	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025101	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	162279299	162279580	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024883	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	66747778	66747884	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036088	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	66215084	66215380	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030827	NOVEL	snoRNA	ACA64	chromosome:C_jacchus3.2.1:X:1:142054208:1	78410143	78410269	D	Small nucleolar RNA ACA64 [Source:RFAM;Acc:RF01225]
ENSCJAG00000035252	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:6:1:158406734:1	36804023	36804131	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000030226	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	107273375	107273512	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032334	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	4503624	4503732	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035149	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	31406000	31406105	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031290	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	44481375	44481476	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036890	NOVEL	miRNA	ENSCJAG00000036890	chromosome:C_jacchus3.2.1:1:1:210400635:1	171609080	171609190	R	<no descrition>
ENSCJAG00000036588	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	61610747	61611043	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034485	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	1853921	1854039	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038028	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	47469037	47469329	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037185	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	37708859	37709155	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028514	NOVEL	miRNA	ENSCJAG00000028514	chromosome:C_jacchus3.2.1:15:1:98464013:1	82549943	82550036	D	<no descrition>
ENSCJAG00000027517	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	53891882	53891985	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037415	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	148127235	148127531	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025830	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	15613219	15613336	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028671	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	31936120	31936221	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030248	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:14:1:108792865:1	53690564	53690696	D	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000030679	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	147637320	147637427	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024432	NOVEL	snoRNA	SNORD58	chromosome:C_jacchus3.2.1:13:1:117903854:1	87409338	87409402	R	Small nucleolar RNA SNORD58 [Source:RFAM;Acc:RF00151]
ENSCJAG00000032101	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	2892651	2892754	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030090	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	158474324	158474627	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026710	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	93716422	93716524	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026595	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	97259042	97259154	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033653	NOVEL	snoRNA	snoU6-53	chromosome:C_jacchus3.2.1:10:1:132174527:1	45557815	45557917	R	Small nucleolar RNA U6-53/MBII-28 [Source:RFAM;Acc:RF00377]
ENSCJAG00000036790	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	107209804	107210098	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030598	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	136403508	136403617	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034576	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	36932649	36932755	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032074	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	8466890	8466992	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037370	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286438.1:1:112050:1	58290	58395	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037835	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	18312461	18312728	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032618	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	36024144	36024245	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023562	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	85319277	85319387	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033860	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	95257298	95257399	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031405	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	58277112	58277210	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035673	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	150547084	150547379	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035647	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	27128700	27128998	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038084	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286575.1:1:25779:1	19261	19364	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037948	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	27403576	27403869	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037029	NOVEL	snoRNA	U8	scaffold:C_jacchus3.2.1:GL290040.1:1:6915:1	6486	6618	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000024688	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	33160830	33160950	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026713	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	85264872	85265012	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030699	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	29998089	29998200	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033222	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:21:1:50472720:1	38484873	38484999	R	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000037587	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	51894058	51894357	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038026	NOVEL	miRNA	ENSCJAG00000038026	chromosome:C_jacchus3.2.1:11:1:130397257:1	57551614	57551698	R	<no descrition>
ENSCJAG00000031354	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	27569461	27569563	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029663	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	188318673	188318779	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028980	NOVEL	miRNA	ENSCJAG00000028980	chromosome:C_jacchus3.2.1:2:1:204313951:1	46852887	46852974	D	<no descrition>
ENSCJAG00000027451	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	3294867	3294973	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024304	NOVEL	snoRNA	SNORA30	chromosome:C_jacchus3.2.1:12:1:121768101:1	28642056	28642184	D	Small nucleolar RNA SNORA30/SNORA37 family [Source:RFAM;Acc:RF00415]
ENSCJAG00000033615	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:18:1:47448759:1	40832482	40832553	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000026920	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	8160772	8160935	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027616	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	23795540	23795652	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025272	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	40080632	40080772	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036998	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	36423645	36423745	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028215	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	64971335	64971429	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025901	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	65299860	65300105	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025322	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	32539919	32540059	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026500	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126863852	126863923	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000029107	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:3:1:190850796:1	32291234	32291371	D	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000032432	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	35910853	35910955	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033958	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	57946140	57946246	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027552	NOVEL	miRNA	ENSCJAG00000027552	chromosome:C_jacchus3.2.1:10:1:132174527:1	126940052	126940147	D	<no descrition>
ENSCJAG00000032939	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	74706198	74706303	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032506	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:12:1:121768101:1	8043975	8044093	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000036063	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	87988392	87988675	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035150	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	100452379	100452484	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033524	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	34478245	34478351	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037388	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	59286222	59286508	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034905	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	20095493	20095620	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000030819	NOVEL	snoRNA	SNORD27	chromosome:C_jacchus3.2.1:11:1:130397257:1	118550188	118550259	R	Small nucleolar RNA SNORD27 [Source:RFAM;Acc:RF00086]
ENSCJAG00000029672	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:14:1:108792865:1	24435597	24435906	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036706	NOVEL	miRNA	ENSCJAG00000036706	chromosome:C_jacchus3.2.1:15:1:98464013:1	24338357	24338474	R	<no descrition>
ENSCJAG00000036632	NOVEL	miRNA	ENSCJAG00000036632	chromosome:C_jacchus3.2.1:16:1:96796970:1	77722855	77722932	R	<no descrition>
ENSCJAG00000027018	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	20049134	20049240	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036209	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	38841577	38841853	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027844	NOVEL	snoRNA	SNORD125	chromosome:C_jacchus3.2.1:1:1:210400635:1	192229781	192229876	R	Small nucleolar RNA SNORD125 [Source:RFAM;Acc:RF01200]
ENSCJAG00000025837	NOVEL	miRNA	ENSCJAG00000025837	chromosome:C_jacchus3.2.1:12:1:121768101:1	107994257	107994384	R	<no descrition>
ENSCJAG00000023584	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	108613999	108614104	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031929	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	50311420	50311522	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037048	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	149051982	149052277	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034848	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:3:1:190850796:1	117367524	117367590	D	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000024700	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:7:1:155834243:1	152376765	152376975	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000026864	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	31272720	31272826	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024433	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	10254416	10254516	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036977	NOVEL	miRNA	ENSCJAG00000036977	chromosome:C_jacchus3.2.1:X:1:142054208:1	137426220	137426309	R	<no descrition>
ENSCJAG00000027482	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	121458256	121458358	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026618	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	83537148	83537253	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035771	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	57598949	57599236	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034135	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	11815916	11816021	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031377	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:1:1:210400635:1	169260769	169260882	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028179	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	90468202	90468311	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026982	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	139811463	139811581	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026418	NOVEL	miRNA	ENSCJAG00000026418	chromosome:C_jacchus3.2.1:8:1:128169293:1	99469976	99470065	D	<no descrition>
ENSCJAG00000034098	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:4:1:171630274:1	150301617	150301678	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000032802	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	4787299	4787406	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038094	NOVEL	miRNA	ENSCJAG00000038094	chromosome:C_jacchus3.2.1:11:1:130397257:1	109326544	109326640	R	<no descrition>
ENSCJAG00000031458	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	346318	346420	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035574	NOVEL	miRNA	ENSCJAG00000035574	chromosome:C_jacchus3.2.1:X:1:142054208:1	106103403	106103494	R	<no descrition>
ENSCJAG00000023944	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	20882973	20883082	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027168	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	89488871	89488966	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030689	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	44837731	44837843	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032757	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	113197106	113197167	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000032488	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:6:1:158406734:1	43883181	43883243	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035541	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	72368687	72368982	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025575	NOVEL	miRNA	ENSCJAG00000025575	chromosome:C_jacchus3.2.1:22:1:49145316:1	13069169	13069273	R	<no descrition>
ENSCJAG00000031368	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:10:1:132174527:1	75812578	75812715	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000031009	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:19:1:49578535:1	4355377	4355492	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037569	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	16818986	16819282	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036212	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	102893682	102893978	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028869	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	70574964	70575070	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026995	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	85899945	85900057	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028540	NOVEL	snoRNA	SCARNA6	chromosome:C_jacchus3.2.1:6:1:158406734:1	149709879	149710153	D	Small Cajal body specific RNA 6 [Source:RFAM;Acc:RF00478]
ENSCJAG00000031229	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	69078557	69078653	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031176	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	34346132	34346242	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037272	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	65528193	65528489	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026345	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:4:1:171630274:1	112341591	112341723	R	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000035234	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	74639838	74639938	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029074	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	73265585	73265691	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034759	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	85829071	85829177	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027712	NOVEL	miRNA	ENSCJAG00000027712	chromosome:C_jacchus3.2.1:X:1:142054208:1	107724621	107724733	R	<no descrition>
ENSCJAG00000025225	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	105215580	105215686	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025485	NOVEL	snoRNA	SNORD51	chromosome:C_jacchus3.2.1:6:1:158406734:1	122083525	122083604	D	Small nucleolar RNA SNORD51 [Source:RFAM;Acc:RF00280]
ENSCJAG00000025638	NOVEL	snoRNA	SNORA20	chromosome:C_jacchus3.2.1:X:1:142054208:1	3281946	3282078	D	Small nucleolar RNA SNORA20 [Source:RFAM;Acc:RF00401]
ENSCJAG00000034729	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	60369539	60369646	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025223	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1339922	1340003	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000026108	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	49528536	49528676	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036820	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	105418093	105418386	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034651	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	121494571	121494674	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032924	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	98483586	98483682	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034454	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88701669	88701779	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037816	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	17626999	17627295	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030739	NOVEL	snoRNA	snoU109	chromosome:C_jacchus3.2.1:2:1:204313951:1	125005054	125005188	D	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]
ENSCJAG00000029523	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	173759395	173759498	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027333	NOVEL	snoRNA	SNORD19	chromosome:C_jacchus3.2.1:15:1:98464013:1	28463745	28463821	D	Small nucleolar RNA SNORD19 [Source:RFAM;Acc:RF00569]
ENSCJAG00000027113	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	19620638	19620744	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032460	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	27301086	27301188	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030252	NOVEL	miRNA	ENSCJAG00000030252	chromosome:C_jacchus3.2.1:13:1:117903854:1	27826951	27827034	D	<no descrition>
ENSCJAG00000035641	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	150250887	150251183	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032147	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	35223863	35223966	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033964	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	23034413	23034512	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026822	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	171545305	171545408	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037307	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	100143830	100144126	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026518	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	2936773	2936878	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036846	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	6915320	6915616	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030092	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	30169183	30169289	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033662	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	124619838	124619939	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023814	NOVEL	miRNA	ENSCJAG00000023814	chromosome:C_jacchus3.2.1:22:1:49145316:1	44881031	44881117	D	<no descrition>
ENSCJAG00000037026	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	20533637	20533929	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027455	NOVEL	miRNA	ENSCJAG00000027455	chromosome:C_jacchus3.2.1:4:1:171630274:1	82955166	82955247	R	<no descrition>
ENSCJAG00000036895	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	117794499	117794795	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037731	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	21590078	21590371	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034072	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	60374119	60374229	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025587	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	111952730	111952833	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025017	NOVEL	miRNA	ENSCJAG00000025017	chromosome:C_jacchus3.2.1:4:1:171630274:1	53431153	53431213	D	<no descrition>
ENSCJAG00000035737	NOVEL	miRNA	ENSCJAG00000035737	chromosome:C_jacchus3.2.1:1:1:210400635:1	198701014	198701120	R	<no descrition>
ENSCJAG00000023547	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	119338969	119339070	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026300	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	114285188	114285289	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034802	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	91592257	91592361	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030487	NOVEL	miRNA	ENSCJAG00000030487	chromosome:C_jacchus3.2.1:18:1:47448759:1	29992321	29992403	D	<no descrition>
ENSCJAG00000037597	NOVEL	miRNA	ENSCJAG00000037597	chromosome:C_jacchus3.2.1:4:1:171630274:1	29015495	29015595	D	<no descrition>
ENSCJAG00000024264	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:14:1:108792865:1	52287036	52287151	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000027218	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	49416841	49416970	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034005	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	36901262	36901361	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031108	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	108780952	108781048	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024121	NOVEL	miRNA	ENSCJAG00000024121	chromosome:C_jacchus3.2.1:10:1:132174527:1	14995713	14995808	D	<no descrition>
ENSCJAG00000029039	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	139075401	139075502	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030058	NOVEL	miRNA	ENSCJAG00000030058	chromosome:C_jacchus3.2.1:16:1:96796970:1	59862471	59862576	D	<no descrition>
ENSCJAG00000029989	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	6456014	6456130	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028353	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	15121808	15121924	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000030768	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	12722215	12722355	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031164	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	79106197	79106306	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026768	NOVEL	snRNA	U12	chromosome:C_jacchus3.2.1:4:1:171630274:1	141156852	141157001	R	U12 minor spliceosomal RNA [Source:RFAM;Acc:RF00007]
ENSCJAG00000035618	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	18931860	18932156	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030683	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	58234845	58234942	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024095	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	26400064	26400204	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025870	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	110560430	110560569	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030401	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:8:1:128169293:1	107961336	107961467	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000032889	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88710658	88710795	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024824	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:19:1:49578535:1	4443168	4443298	D	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000037399	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	69321430	69321723	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037985	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL288669.1:1:12570:1	5316	5422	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036443	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	127512347	127512642	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028003	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:9:1:124281992:1	23581640	23581772	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000024915	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	117644564	117644688	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025032	NOVEL	miRNA	ENSCJAG00000025032	chromosome:C_jacchus3.2.1:5:1:159171411:1	133904153	133904223	D	<no descrition>
ENSCJAG00000035634	NOVEL	miRNA	ENSCJAG00000035634	scaffold:C_jacchus3.2.1:GL284844.1:1:71681:1	35493	35578	R	<no descrition>
ENSCJAG00000031467	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	71434391	71434492	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027942	NOVEL	miRNA	ENSCJAG00000027942	chromosome:C_jacchus3.2.1:10:1:132174527:1	45305959	45306064	R	<no descrition>
ENSCJAG00000034865	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	158375745	158375849	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023564	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	163809305	163809415	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023912	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	57565456	57565551	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024696	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	97280940	97281068	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025080	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	3597398	3597538	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026633	NOVEL	snoRNA	SNORD37	chromosome:C_jacchus3.2.1:22:1:49145316:1	3636135	3636200	R	Small nucleolar RNA SNORD37 [Source:RFAM;Acc:RF00440]
ENSCJAG00000026723	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	40280309	40280457	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034373	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:10:1:132174527:1	48464819	48464946	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000036293	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	40251821	40252116	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025102	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	44975851	44975954	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026787	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	116067213	116067314	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035525	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	5078887	5079183	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025492	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126886609	126886683	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000026339	NOVEL	miRNA	ENSCJAG00000026339	chromosome:C_jacchus3.2.1:1:1:210400635:1	200299123	200299204	R	<no descrition>
ENSCJAG00000036556	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	34008162	34008439	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031104	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	7040991	7041109	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035830	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	134591834	134592130	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031880	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	96349873	96349975	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036310	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL290163.1:1:6228:1	4481	4778	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035556	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	2708961	2709256	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036289	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	6963410	6963705	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034820	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	36765396	36765508	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036158	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286703.1:1:12796:1	5500	5613	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036736	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	158168799	158169102	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028171	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	25086311	25086474	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036392	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	36365661	36365956	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025910	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	93457703	93457809	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036816	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286356.1:1:17352:1	2714	2809	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035361	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	11061026	11061167	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023601	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	95875828	95875933	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023647	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	43665886	43665984	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024912	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	8670228	8670329	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026315	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	175547835	175547941	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032078	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	105739479	105739597	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030009	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	87706352	87706458	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036455	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	52282	52377	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025467	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	51825953	51826071	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026623	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	130535706	130536013	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024245	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	11095769	11095881	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026629	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	138050379	138050703	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032893	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:2:1:204313951:1	47144523	47144738	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000034565	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:11:1:130397257:1	29517164	29517278	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000029077	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	58175465	58175762	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024611	NOVEL	miRNA	ENSCJAG00000024611	chromosome:C_jacchus3.2.1:13:1:117903854:1	96350169	96350253	D	<no descrition>
ENSCJAG00000032623	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	129500041	129500142	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031359	NOVEL	snoRNA	SNORD34	chromosome:C_jacchus3.2.1:22:1:49145316:1	41376855	41376924	D	Small nucleolar RNA SNORD34 [Source:RFAM;Acc:RF00147]
ENSCJAG00000025797	NOVEL	miRNA	ENSCJAG00000025797	chromosome:C_jacchus3.2.1:5:1:159171411:1	128962452	128962574	R	<no descrition>
ENSCJAG00000034221	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	50054419	50054520	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027175	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	160106103	160106221	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036255	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	10832021	10832316	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025808	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	123152811	123152912	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033183	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	38427592	38427841	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024078	NOVEL	miRNA	ENSCJAG00000024078	chromosome:C_jacchus3.2.1:16:1:96796970:1	15323043	15323153	R	<no descrition>
ENSCJAG00000036062	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	7454894	7455189	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036960	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285151.1:1:17321:1	6716	7012	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026445	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	97815012	97815118	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033133	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	53247478	53247577	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037176	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL284831.1:1:17695:1	2010	2119	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031292	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:10:1:132174527:1	111304194	111304255	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000036036	NOVEL	miRNA	ENSCJAG00000036036	chromosome:C_jacchus3.2.1:21:1:50472720:1	15861888	15861980	D	<no descrition>
ENSCJAG00000024836	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:8:1:128169293:1	84441766	84441893	R	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000036972	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	126237442	126237738	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030296	NOVEL	miRNA	ENSCJAG00000030296	chromosome:C_jacchus3.2.1:X:1:142054208:1	122448582	122448678	R	<no descrition>
ENSCJAG00000031414	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	7002448	7002554	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029814	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	188684529	188684631	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033021	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:4:1:171630274:1	155469864	155469915	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028755	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	34853940	34854059	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023987	NOVEL	snoRNA	SNORD103	chromosome:C_jacchus3.2.1:7:1:155834243:1	65175024	65175096	R	Small nucleolar RNA SNORD103/SNORD85 [Source:RFAM;Acc:RF00188]
ENSCJAG00000028295	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	150221578	150221713	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030400	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	125837526	125837632	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035106	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	48463295	48463401	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033535	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	20769698	20769805	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023534	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	72823225	72823332	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036492	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	166968171	166968467	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031106	NOVEL	miRNA	ENSCJAG00000031106	chromosome:C_jacchus3.2.1:15:1:98464013:1	30999179	30999264	R	<no descrition>
ENSCJAG00000030329	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	4237522	4237625	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033141	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	106279245	106279346	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036288	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	37060944	37061239	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035831	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	64181208	64181504	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030855	NOVEL	miRNA	ENSCJAG00000030855	chromosome:C_jacchus3.2.1:5:1:159171411:1	99355231	99355343	R	<no descrition>
ENSCJAG00000025528	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	3853770	3853878	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028338	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	106628350	106628451	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034262	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	19801781	19801887	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028460	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	32777617	32777718	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027159	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	395573	395713	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037673	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	22219614	22219718	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033106	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	97287390	97287485	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023632	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	32798561	32798891	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032124	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	19830212	19830320	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032726	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:X:1:142054208:1	131632486	131632547	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000031700	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	40006720	40006829	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032016	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	40563561	40563664	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030341	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	41159639	41159738	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037579	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	10312108	10312404	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035688	NOVEL	miRNA	ENSCJAG00000035688	chromosome:C_jacchus3.2.1:2:1:204313951:1	82337449	82337539	R	<no descrition>
ENSCJAG00000028835	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	14497868	14497969	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036065	NOVEL	snoRNA	SNORD88	scaffold:C_jacchus3.2.1:GL284941.1:1:37247:1	27443	27532	R	Small nucleolar RNA SNORD88 [Source:RFAM;Acc:RF00604]
ENSCJAG00000036344	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	38028037	38028333	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029478	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	75016833	75016936	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025931	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	13254689	13254807	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031628	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	868202	868297	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033982	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	33591365	33591470	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036477	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	43208716	43209012	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031103	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	12692581	12692696	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000029236	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	69621150	69621257	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025298	NOVEL	miRNA	ENSCJAG00000025298	chromosome:C_jacchus3.2.1:2:1:204313951:1	21808535	21808628	D	<no descrition>
ENSCJAG00000037898	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	84355118	84355422	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024485	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	740318	740424	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030483	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	62878698	62878805	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032371	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29562558	29562673	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029009	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	110343153	110343248	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035552	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	83773721	83774017	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030727	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	138553952	138554059	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031203	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	194040513	194040613	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026728	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	108832464	108832565	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024978	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	65838823	65838929	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026155	NOVEL	snoRNA	SNORA77	chromosome:C_jacchus3.2.1:7:1:155834243:1	42966695	42966819	R	Small nucleolar RNA SNORA77 [Source:RFAM;Acc:RF00599]
ENSCJAG00000029497	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	137680833	137680939	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024246	NOVEL	miRNA	ENSCJAG00000024246	chromosome:C_jacchus3.2.1:1:1:210400635:1	205839715	205839806	D	<no descrition>
ENSCJAG00000027185	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	90719173	90719273	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037537	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	128732142	128732436	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025112	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:X:1:142054208:1	127670371	127670493	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000025232	NOVEL	miRNA	ENSCJAG00000025232	chromosome:C_jacchus3.2.1:15:1:98464013:1	96252868	96252959	R	<no descrition>
ENSCJAG00000032288	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	47398252	47398355	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037900	NOVEL	miRNA	ENSCJAG00000037900	chromosome:C_jacchus3.2.1:14:1:108792865:1	37003620	37003722	R	<no descrition>
ENSCJAG00000027668	NOVEL	snoRNA	SNORA64	chromosome:C_jacchus3.2.1:9:1:124281992:1	25339392	25339518	D	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000024612	NOVEL	snoRNA	SNORD33	chromosome:C_jacchus3.2.1:22:1:49145316:1	41375931	41376014	D	Small nucleolar RNA Z195/SNORD33/SNORD32 family [Source:RFAM;Acc:RF00133]
ENSCJAG00000035856	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	32171162	32171452	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030791	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:20:1:44557958:1	21989379	21989513	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000030363	NOVEL	snoRNA	SNORA67	chromosome:C_jacchus3.2.1:5:1:159171411:1	89545334	89545474	R	Small nucleolar RNA SNORA67 [Source:RFAM;Acc:RF00272]
ENSCJAG00000023848	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	110768489	110768832	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036985	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	26005523	26005819	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027929	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	2098944	2099061	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034826	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	2874318	2874412	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000038078	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL285886.1:1:10842:1	603	706	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031486	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	1446044	1446147	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028957	NOVEL	miRNA	ENSCJAG00000028957	chromosome:C_jacchus3.2.1:X:1:142054208:1	103145268	103145379	D	<no descrition>
ENSCJAG00000037282	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	60678057	60678353	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037853	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	57851392	57851691	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027574	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	144514860	144514999	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027914	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:X:1:142054208:1	90051724	90051856	R	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000030047	NOVEL	miRNA	ENSCJAG00000030047	chromosome:C_jacchus3.2.1:1:1:210400635:1	159168568	159168661	D	<no descrition>
ENSCJAG00000029356	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	114717296	114717399	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026752	NOVEL	snoRNA	SNORD11	chromosome:C_jacchus3.2.1:6:1:158406734:1	117904179	117904262	D	Small nucleolar RNA SNORD11 [Source:RFAM;Acc:RF01182]
ENSCJAG00000036699	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	57091831	57092126	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030518	NOVEL	miRNA	ENSCJAG00000030518	chromosome:C_jacchus3.2.1:6:1:158406734:1	3428184	3428267	R	<no descrition>
ENSCJAG00000036531	NOVEL	miRNA	ENSCJAG00000036531	chromosome:C_jacchus3.2.1:9:1:124281992:1	63769802	63769886	R	<no descrition>
ENSCJAG00000037074	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL284763.1:1:350917:1	253448	253554	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029399	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	129955027	129955146	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031655	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	98230340	98230448	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036750	NOVEL	miRNA	ENSCJAG00000036750	chromosome:C_jacchus3.2.1:14:1:108792865:1	41241144	41241234	R	<no descrition>
ENSCJAG00000029316	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	83993755	83994063	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035651	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	19711847	19712139	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033328	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	88998482	88998589	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035913	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	159476588	159476872	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023949	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	35666946	35667050	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028208	NOVEL	snoRNA	SNORA32	chromosome:C_jacchus3.2.1:21:1:50472720:1	45498702	45498818	R	Small nucleolar RNA SNORA32 [Source:RFAM;Acc:RF00421]
ENSCJAG00000028730	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	170227561	170227662	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029398	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:10:1:132174527:1	22192973	22193102	R	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000035209	NOVEL	miRNA	ENSCJAG00000035209	chromosome:C_jacchus3.2.1:1:1:210400635:1	109598628	109598742	D	<no descrition>
ENSCJAG00000037943	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	59290025	59290321	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037596	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	92918204	92918501	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026876	NOVEL	miRNA	ENSCJAG00000026876	chromosome:C_jacchus3.2.1:X:1:142054208:1	106427126	106427203	D	<no descrition>
ENSCJAG00000034663	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	59259249	59259352	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036170	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	31267161	31267461	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030562	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	86726596	86726700	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023668	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	20681995	20682101	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028280	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	39150728	39150831	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032632	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	72298731	72298825	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033624	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	64302708	64302804	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034525	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:13:1:117903854:1	51983468	51983540	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000035548	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	13070574	13070858	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029720	NOVEL	miRNA	ENSCJAG00000029720	chromosome:C_jacchus3.2.1:1:1:210400635:1	41378716	41378801	R	<no descrition>
ENSCJAG00000028777	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	80743398	80743707	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024113	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	70364602	70364742	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028701	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	185314696	185314814	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030131	NOVEL	snoRNA	SNORA3	chromosome:C_jacchus3.2.1:11:1:130397257:1	72122875	72123005	D	Small nucleolar RNA SNORA3/SNORA45 family [Source:RFAM;Acc:RF00334]
ENSCJAG00000023569	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	59350163	59350265	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023956	NOVEL	miRNA	ENSCJAG00000023956	chromosome:C_jacchus3.2.1:10:1:132174527:1	20870409	20870509	R	<no descrition>
ENSCJAG00000027589	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	106065160	106065324	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032908	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	34464119	34464221	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033553	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	121604943	121605046	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025340	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	37510822	37510962	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032262	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	24136150	24136261	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032434	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	13805293	13805394	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027048	NOVEL	snoRNA	SNORA22	chromosome:C_jacchus3.2.1:9:1:124281992:1	31833207	31833339	D	Small nucleolar RNA SNORA22 [Source:RFAM;Acc:RF00414]
ENSCJAG00000029776	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	61061204	61061308	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024923	NOVEL	miRNA	ENSCJAG00000024923	chromosome:C_jacchus3.2.1:11:1:130397257:1	97196871	97196984	D	<no descrition>
ENSCJAG00000027806	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	103262664	103262804	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026072	NOVEL	miRNA	ENSCJAG00000026072	chromosome:C_jacchus3.2.1:12:1:121768101:1	11738159	11738237	R	<no descrition>
ENSCJAG00000034111	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	19738874	19738978	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028554	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	68853619	68853782	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037162	NOVEL	misc_RNA	7SK	scaffold:C_jacchus3.2.1:GL290399.1:1:7468:1	3428	3717	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025863	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	50436843	50436937	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036587	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	50750129	50750425	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024313	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	32458928	32459068	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024252	NOVEL	miRNA	ENSCJAG00000024252	chromosome:C_jacchus3.2.1:6:1:158406734:1	54317570	54317654	R	<no descrition>
ENSCJAG00000025349	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:11:1:130397257:1	44105120	44105247	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000035601	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	4857027	4857111	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024501	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	91798337	91798475	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028676	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	127966053	127966147	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026390	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	44511204	44511334	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028256	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	9587189	9587294	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029877	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	98194390	98194501	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037093	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	136044	136154	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037323	NOVEL	snoRNA	SNORA64	scaffold:C_jacchus3.2.1:GL285903.1:1:576229:1	167876	168008	R	Small nucleolar RNA SNORA64/SNORA10 family [Source:RFAM;Acc:RF00264]
ENSCJAG00000024152	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:1:1:210400635:1	177462365	177462436	D	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000029410	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:22:1:49145316:1	19471329	19471425	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024544	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	108120486	108120592	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027627	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	130639560	130639662	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029425	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	26425897	26425997	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028365	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	156111828	156111968	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031113	NOVEL	snoRNA	SNORD38	chromosome:C_jacchus3.2.1:13:1:117903854:1	36867573	36867638	R	Small nucleolar RNA SNORD38 [Source:RFAM;Acc:RF00212]
ENSCJAG00000034606	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:19:1:49578535:1	12607806	12607957	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024550	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	121236628	121236791	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029676	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	106450295	106450402	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036785	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	101798	101904	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035790	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	2396002	2396297	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031706	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	34663910	34664026	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033480	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	35922297	35922402	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036557	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	74110139	74110435	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029093	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	10280418	10280513	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035784	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	154550570	154550864	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026314	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:9:1:124281992:1	45688598	45688730	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000034099	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	13124145	13124251	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027302	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:10:1:132174527:1	7161547	7161694	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037251	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	13056124	13056420	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035379	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	66626572	66626678	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024773	NOVEL	miRNA	ENSCJAG00000024773	chromosome:C_jacchus3.2.1:13:1:117903854:1	52615771	52615852	D	<no descrition>
ENSCJAG00000025655	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	147578140	147578300	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024382	NOVEL	snoRNA	SNORA24	chromosome:C_jacchus3.2.1:3:1:190850796:1	75320572	75320702	R	Small nucleolar RNA SNORA24 [Source:RFAM;Acc:RF00399]
ENSCJAG00000026013	NOVEL	miRNA	ENSCJAG00000026013	chromosome:C_jacchus3.2.1:10:1:132174527:1	130109436	130109545	D	<no descrition>
ENSCJAG00000030479	NOVEL	snoRNA	SNORD78	chromosome:C_jacchus3.2.1:14:1:108792865:1	49788598	49788662	R	Small nucleolar RNA SNORD78 [Source:RFAM;Acc:RF00592]
ENSCJAG00000036376	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	99143475	99143777	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037202	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	64768713	64769004	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036945	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL289022.1:1:11913:1	9717	9819	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030283	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	112025299	112025400	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023577	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	104279329	104279424	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036256	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	33458101	33458164	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029225	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	99005471	99005577	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030570	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	31588223	31588326	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035752	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	62979308	62979603	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031822	NOVEL	snoRNA	SNORD19B	chromosome:C_jacchus3.2.1:15:1:98464013:1	28463407	28463486	D	Small nucleolar RNA SNORD19B [Source:RFAM;Acc:RF01183]
ENSCJAG00000026007	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	14404927	14405067	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034597	NOVEL	miRNA	ENSCJAG00000034597	chromosome:C_jacchus3.2.1:2:1:204313951:1	68852121	68852244	D	<no descrition>
ENSCJAG00000024329	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	153083284	153083392	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036692	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	18383787	18384064	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037556	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	42132944	42133239	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032395	NOVEL	miRNA	ENSCJAG00000032395	chromosome:C_jacchus3.2.1:4:1:171630274:1	115294976	115295173	R	<no descrition>
ENSCJAG00000030093	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	147527242	147527348	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037081	NOVEL	miRNA	ENSCJAG00000037081	chromosome:C_jacchus3.2.1:19:1:49578535:1	31693757	31693823	R	<no descrition>
ENSCJAG00000036261	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	60411433	60411729	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030137	NOVEL	snoRNA	SNORA17	chromosome:C_jacchus3.2.1:1:1:210400635:1	180854653	180854776	R	Small nucleolar RNA SNORA17 [Source:RFAM;Acc:RF00560]
ENSCJAG00000025985	NOVEL	miRNA	ENSCJAG00000025985	chromosome:C_jacchus3.2.1:2:1:204313951:1	11814358	11814439	D	<no descrition>
ENSCJAG00000029582	NOVEL	miRNA	ENSCJAG00000029582	chromosome:C_jacchus3.2.1:4:1:171630274:1	48187222	48187302	R	<no descrition>
ENSCJAG00000032551	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:1:1:210400635:1	62010650	62010775	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000037675	NOVEL	miRNA	ENSCJAG00000037675	chromosome:C_jacchus3.2.1:6:1:158406734:1	111992485	111992575	R	<no descrition>
ENSCJAG00000037568	NOVEL	miRNA	ENSCJAG00000037568	chromosome:C_jacchus3.2.1:14:1:108792865:1	1388790	1388860	D	<no descrition>
ENSCJAG00000030576	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	29440829	29440969	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027732	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	46877208	46877314	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033085	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	139202113	139202218	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038022	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	41826826	41827121	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036640	NOVEL	miRNA	ENSCJAG00000036640	scaffold:C_jacchus3.2.1:GL287915.1:1:4709:1	463	564	R	<no descrition>
ENSCJAG00000034113	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:12:1:121768101:1	54854450	54854511	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030458	NOVEL	snoRNA	SNORA5	chromosome:C_jacchus3.2.1:8:1:128169293:1	12649109	12649242	R	Small nucleolar RNA SNORA5 [Source:RFAM;Acc:RF00392]
ENSCJAG00000037488	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	83446855	83447151	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029473	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	128660019	128660120	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029647	NOVEL	snoRNA	SNORA24	chromosome:C_jacchus3.2.1:10:1:132174527:1	7661462	7661592	R	Small nucleolar RNA SNORA24 [Source:RFAM;Acc:RF00399]
ENSCJAG00000029784	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	42210524	42210642	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028588	NOVEL	miRNA	ENSCJAG00000028588	chromosome:C_jacchus3.2.1:2:1:204313951:1	97201778	97201874	D	<no descrition>
ENSCJAG00000036682	NOVEL	miRNA	ENSCJAG00000036682	chromosome:C_jacchus3.2.1:10:1:132174527:1	83020846	83021000	R	<no descrition>
ENSCJAG00000029568	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:6:1:158406734:1	4157494	4157625	R	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000029082	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:4:1:171630274:1	35716637	35716767	R	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000035817	NOVEL	miRNA	ENSCJAG00000035817	chromosome:C_jacchus3.2.1:16:1:96796970:1	91375302	91375366	R	<no descrition>
ENSCJAG00000035836	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	31009251	31009547	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036337	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	154952932	154953226	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035948	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	72166487	72166782	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026432	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	20377703	20377804	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035914	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL284773.1:1:15574:1	14361	14653	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036227	NOVEL	miRNA	ENSCJAG00000036227	chromosome:C_jacchus3.2.1:16:1:96796970:1	19416870	19416970	R	<no descrition>
ENSCJAG00000035976	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	14698411	14698706	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036427	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	130230524	130230819	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032610	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	13042537	13042649	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027944	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	69193838	69193941	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037242	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	189083672	189083968	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028794	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	93264475	93264638	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026820	NOVEL	miRNA	ENSCJAG00000026820	chromosome:C_jacchus3.2.1:22:1:49145316:1	44878670	44878742	D	<no descrition>
ENSCJAG00000027268	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:13:1:117903854:1	56728197	56728481	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037137	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	77812313	77812609	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026506	NOVEL	miRNA	ENSCJAG00000026506	chromosome:C_jacchus3.2.1:4:1:171630274:1	32550359	32550460	R	<no descrition>
ENSCJAG00000036352	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286565.1:1:17675:1	7108	7214	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032384	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	168841512	168841609	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027982	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	50336411	50336511	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030497	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	6044719	6044859	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028958	NOVEL	snoRNA	SNORA74	chromosome:C_jacchus3.2.1:2:1:204313951:1	67152965	67153165	R	Small nucleolar RNA SNORA74 [Source:RFAM;Acc:RF00090]
ENSCJAG00000029674	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	109189285	109189503	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000027985	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	45299374	45299475	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028028	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	83670294	83670403	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030482	NOVEL	snoRNA	SNORD66	chromosome:C_jacchus3.2.1:15:1:98464013:1	5932539	5932614	D	Small nucleolar RNA SNORD66 [Source:RFAM;Acc:RF00572]
ENSCJAG00000026813	NOVEL	miRNA	ENSCJAG00000026813	chromosome:C_jacchus3.2.1:X:1:142054208:1	126342016	126342098	R	<no descrition>
ENSCJAG00000033280	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	154121526	154121605	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000031109	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	39918770	39918876	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037712	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	31865653	31865952	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035662	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	110658984	110659284	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029807	NOVEL	miRNA	ENSCJAG00000029807	chromosome:C_jacchus3.2.1:2:1:204313951:1	153766957	153767052	D	<no descrition>
ENSCJAG00000034393	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	22775053	22775156	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025766	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	62368615	62368721	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028062	NOVEL	miRNA	ENSCJAG00000028062	chromosome:C_jacchus3.2.1:7:1:155834243:1	114791436	114791529	R	<no descrition>
ENSCJAG00000024442	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	32529063	32529169	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027906	NOVEL	snoRNA	SCARNA18	chromosome:C_jacchus3.2.1:13:1:117903854:1	87730621	87730703	D	small Cajal body-specific RNA 18 [Source:RFAM;Acc:RF00283]
ENSCJAG00000026884	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:13:1:117903854:1	83696484	83696769	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000027380	NOVEL	miRNA	ENSCJAG00000027380	chromosome:C_jacchus3.2.1:8:1:128169293:1	29780006	29780073	D	<no descrition>
ENSCJAG00000032736	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	161449564	161449658	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025050	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	42083916	42084020	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030369	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126902209	126902280	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000037873	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285853.1:1:13778:1	9384	9502	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030108	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:13:1:117903854:1	69298861	69299155	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037659	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	21791966	21792262	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032864	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	73317116	73317382	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029581	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	25962486	25962582	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033093	NOVEL	snoRNA	SNORD88	chromosome:C_jacchus3.2.1:22:1:49145316:1	42637900	42637990	R	Small nucleolar RNA SNORD88 [Source:RFAM;Acc:RF00604]
ENSCJAG00000029659	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	44507583	44507695	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036442	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	47628037	47628333	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024148	NOVEL	snRNA	U12	chromosome:C_jacchus3.2.1:22:1:49145316:1	48380292	48380429	D	U12 minor spliceosomal RNA [Source:RFAM;Acc:RF00007]
ENSCJAG00000034654	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	108033695	108033804	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034335	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:10:1:132174527:1	116648210	116648271	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000035545	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	578639	578744	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027984	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	110911966	110912072	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032121	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	22553171	22553282	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030240	NOVEL	misc_RNA	RNase_MRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	137427317	137427578	R	RNase MRP [Source:RFAM;Acc:RF00030]
ENSCJAG00000029772	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	62508560	62508672	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027266	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1332338	1332419	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000036008	NOVEL	miRNA	ENSCJAG00000036008	chromosome:C_jacchus3.2.1:3:1:190850796:1	133058042	133058133	R	<no descrition>
ENSCJAG00000025046	NOVEL	snoRNA	SNORND104	chromosome:C_jacchus3.2.1:5:1:159171411:1	82898479	82898548	D	Small nucleolar RNA SNORD104 [Source:RFAM;Acc:RF00289]
ENSCJAG00000030463	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	82596988	82597089	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036295	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286991.1:1:6271:1	361	458	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036772	NOVEL	miRNA	ENSCJAG00000036772	scaffold:C_jacchus3.2.1:GL285763.1:1:4975:1	4833	4925	R	<no descrition>
ENSCJAG00000026732	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	66939015	66939121	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028096	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	134118712	134118824	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024823	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	9038149	9038290	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035614	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	126041026	126041322	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027118	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	14846745	14846855	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025431	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	30174921	30175028	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033813	NOVEL	miRNA	ENSCJAG00000033813	chromosome:C_jacchus3.2.1:X:1:142054208:1	12568185	12568259	R	<no descrition>
ENSCJAG00000023971	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	32913356	32913462	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029512	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:X:1:142054208:1	123991227	123991343	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000036705	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	108367442	108367737	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024361	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	67389108	67389271	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037111	NOVEL	miRNA	ENSCJAG00000037111	chromosome:C_jacchus3.2.1:22:1:49145316:1	16859789	16859866	R	<no descrition>
ENSCJAG00000030979	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	102432051	102432157	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037432	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	40182285	40182581	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031857	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	99045343	99045455	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029983	NOVEL	miRNA	ENSCJAG00000029983	chromosome:C_jacchus3.2.1:8:1:128169293:1	51290580	51290676	D	<no descrition>
ENSCJAG00000023517	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	98835801	98835911	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023471	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	66787183	66787289	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023854	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	19400049	19400181	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036180	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:20:1:44557958:1	15542963	15543110	R	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000026509	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	150000048	150000153	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037626	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	6216727	6217022	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028143	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	111505322	111505426	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026471	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1305717	1305798	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000027896	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126873145	126873219	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000029330	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	77921776	77921916	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037102	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	12681412	12681710	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027659	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	148405752	148405858	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023996	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	128834630	128834736	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036084	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL285490.1:1:50669:1	2399	2532	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029053	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:10:1:132174527:1	95064193	95064321	R	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000025290	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:20:1:44557958:1	13513472	13513615	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037581	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	32909014	32909309	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033426	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88700694	88700800	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026437	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	51272203	51272344	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029708	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:7:1:155834243:1	132865876	132866037	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025815	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:14:1:108792865:1	79155772	79155935	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029311	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	141162152	141162257	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030965	NOVEL	miRNA	ENSCJAG00000030965	chromosome:C_jacchus3.2.1:8:1:128169293:1	82215845	82215938	R	<no descrition>
ENSCJAG00000038077	NOVEL	miRNA	ENSCJAG00000038077	chromosome:C_jacchus3.2.1:6:1:158406734:1	90168797	90168889	R	<no descrition>
ENSCJAG00000027166	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	7575169	7575304	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023598	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	18891054	18891157	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037967	NOVEL	miRNA	ENSCJAG00000037967	chromosome:C_jacchus3.2.1:16:1:96796970:1	65220990	65221075	D	<no descrition>
ENSCJAG00000037397	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	36423330	36423626	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030370	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	59645251	59645357	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028002	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	44061415	44061510	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034892	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	35965837	35965940	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035990	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	44732983	44733279	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027876	NOVEL	miRNA	ENSCJAG00000027876	chromosome:C_jacchus3.2.1:19:1:49578535:1	31856219	31856293	R	<no descrition>
ENSCJAG00000034644	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	32716494	32716595	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035711	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	20090486	20090775	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026683	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:7:1:155834243:1	120212173	120212309	D	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000036763	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL289301.1:1:8843:1	8347	8453	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024965	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	30108308	30108422	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033983	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	81559558	81559661	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030250	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	65043889	65043990	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031608	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	88406228	88406287	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029655	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	150941759	150941857	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026758	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	28172415	28172521	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038086	NOVEL	miRNA	ENSCJAG00000038086	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	47890	47973	R	<no descrition>
ENSCJAG00000037482	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	34703947	34704245	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036697	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	7070953	7071248	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030723	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	117549120	117549284	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025926	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	164774699	164774877	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000037266	NOVEL	miRNA	ENSCJAG00000037266	chromosome:C_jacchus3.2.1:2:1:204313951:1	108319986	108320049	D	<no descrition>
ENSCJAG00000024230	NOVEL	miRNA	ENSCJAG00000024230	chromosome:C_jacchus3.2.1:12:1:121768101:1	72971677	72971758	R	<no descrition>
ENSCJAG00000032591	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	6957232	6957338	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036649	NOVEL	miRNA	ENSCJAG00000036649	chromosome:C_jacchus3.2.1:9:1:124281992:1	31332095	31332193	R	<no descrition>
ENSCJAG00000026322	NOVEL	miRNA	ENSCJAG00000026322	chromosome:C_jacchus3.2.1:X:1:142054208:1	122447074	122447150	R	<no descrition>
ENSCJAG00000027331	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	18962117	18962427	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030878	NOVEL	snoRNA	SNORD5	chromosome:C_jacchus3.2.1:17:1:74750902:1	56309466	56309538	R	Small nucleolar RNA SNORD5 [Source:RFAM;Acc:RF01161]
ENSCJAG00000029006	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	57915512	57915618	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025651	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	37750237	37750343	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031387	NOVEL	miRNA	ENSCJAG00000031387	chromosome:C_jacchus3.2.1:3:1:190850796:1	45372069	45372149	R	<no descrition>
ENSCJAG00000037888	NOVEL	miRNA	ENSCJAG00000037888	chromosome:C_jacchus3.2.1:5:1:159171411:1	37118331	37118414	R	<no descrition>
ENSCJAG00000025675	NOVEL	miRNA	ENSCJAG00000025675	chromosome:C_jacchus3.2.1:X:1:142054208:1	48482210	48482287	D	<no descrition>
ENSCJAG00000025018	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	148811416	148811522	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030158	NOVEL	miRNA	ENSCJAG00000030158	chromosome:C_jacchus3.2.1:4:1:171630274:1	33229984	33230091	D	<no descrition>
ENSCJAG00000027558	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:8:1:128169293:1	21809631	21809834	D	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000025302	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	30912997	30913103	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024235	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	84329290	84329430	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029150	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	124624553	124624671	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034963	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	38613401	38613510	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037563	NOVEL	snoRNA	SNORA18	scaffold:C_jacchus3.2.1:GL284694.1:1:44231:1	22881	22977	R	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000028354	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	3704843	3704951	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036055	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	81672166	81672462	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037750	NOVEL	miRNA	ENSCJAG00000037750	chromosome:C_jacchus3.2.1:15:1:98464013:1	87919505	87919600	R	<no descrition>
ENSCJAG00000036214	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	8807824	8808119	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024275	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	111033813	111033904	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029419	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	77135704	77135804	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024291	NOVEL	miRNA	ENSCJAG00000024291	chromosome:C_jacchus3.2.1:4:1:171630274:1	46576169	46576265	R	<no descrition>
ENSCJAG00000024407	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	138349075	138349186	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034348	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	154362268	154362370	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024473	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	82525091	82525197	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025656	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	25785834	25785952	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027408	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:1:1:210400635:1	177369867	177369938	R	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000031852	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88712815	88712921	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031333	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	158483502	158483604	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031327	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	61770447	61770553	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024389	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	21966738	21966841	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028921	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:7:1:155834243:1	53532163	53532303	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000023583	NOVEL	snoRNA	SNORD12	chromosome:C_jacchus3.2.1:5:1:159171411:1	43325861	43325951	D	Small nucleolar SNORD12/SNORD106 [Source:RFAM;Acc:RF00581]
ENSCJAG00000036497	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	86948579	86948875	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037395	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	125421612	125421712	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028767	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	123143724	123144024	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035291	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	25544797	25544932	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037071	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	18663711	18664007	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029865	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	98407014	98407123	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027563	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	56073834	56073939	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026353	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:X:1:142054208:1	63360460	63360549	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031163	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	46032038	46032139	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030457	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	119081624	119081719	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023920	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	69568652	69568777	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000036571	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL284711.1:1:53255:1	46879	47019	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031380	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	119283133	119283252	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026684	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	77550326	77550553	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036672	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	80949028	80949315	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036996	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	38116196	38116486	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024665	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	21217499	21217602	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035204	NOVEL	miRNA	ENSCJAG00000035204	chromosome:C_jacchus3.2.1:4:1:171630274:1	134952115	134952190	D	<no descrition>
ENSCJAG00000036134	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	87865111	87865407	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037157	NOVEL	miRNA	ENSCJAG00000037157	chromosome:C_jacchus3.2.1:13:1:117903854:1	58623457	58623548	D	<no descrition>
ENSCJAG00000037417	NOVEL	miRNA	ENSCJAG00000037417	chromosome:C_jacchus3.2.1:18:1:47448759:1	5875956	5876043	R	<no descrition>
ENSCJAG00000026568	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	140048300	140048414	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029713	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	21639997	21640103	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026836	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	94299431	94299540	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025324	NOVEL	miRNA	ENSCJAG00000025324	chromosome:C_jacchus3.2.1:3:1:190850796:1	176840190	176840304	R	<no descrition>
ENSCJAG00000029086	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	18612055	18612194	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036125	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	113508833	113509129	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025062	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:13:1:117903854:1	26451898	26452031	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000029099	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	44088957	44089067	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036914	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	41615403	41615697	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023744	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	14179333	14179440	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037404	NOVEL	miRNA	ENSCJAG00000037404	chromosome:C_jacchus3.2.1:3:1:190850796:1	172318995	172319089	R	<no descrition>
ENSCJAG00000027138	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:2:1:204313951:1	14193391	14193526	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000025890	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	52548275	52548601	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024144	NOVEL	snoRNA	SNORD83	chromosome:C_jacchus3.2.1:4:1:171630274:1	32064685	32064760	R	Small nucleolar RNA SNORD83 [Source:RFAM;Acc:RF00137]
ENSCJAG00000028529	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:2:1:204313951:1	32872361	32872460	R	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000024495	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:10:1:132174527:1	89526579	89526710	R	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000026784	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	59407146	59407247	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028781	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1254810	1254896	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000036844	NOVEL	miRNA	ENSCJAG00000036844	chromosome:C_jacchus3.2.1:3:1:190850796:1	49357254	49357329	R	<no descrition>
ENSCJAG00000036451	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286226.1:1:129224:1	62360	62466	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028097	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	48509561	48509678	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034256	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	133318225	133318496	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035563	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288648.1:1:8814:1	3944	4041	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023672	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	165273123	165273236	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036634	NOVEL	miRNA	ENSCJAG00000036634	chromosome:C_jacchus3.2.1:3:1:190850796:1	116351933	116352024	R	<no descrition>
ENSCJAG00000034739	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	38862325	38862417	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035290	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:6:1:158406734:1	16496812	16496929	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000034452	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	13024659	13024762	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030670	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	92614631	92614736	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037218	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	13085812	13086107	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038100	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	115333588	115333884	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029477	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	5627125	5627239	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028270	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	56246224	56246328	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027803	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	48956598	48956699	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000012398	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	137151853	137151959	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037367	NOVEL	miRNA	ENSCJAG00000037367	chromosome:C_jacchus3.2.1:6:1:158406734:1	150761301	150761373	R	<no descrition>
ENSCJAG00000026333	NOVEL	snoRNA	SNORA5	chromosome:C_jacchus3.2.1:8:1:128169293:1	12648047	12648183	R	Small nucleolar RNA SNORA5 [Source:RFAM;Acc:RF00392]
ENSCJAG00000023541	NOVEL	miRNA	ENSCJAG00000023541	chromosome:C_jacchus3.2.1:12:1:121768101:1	2514423	2514512	D	<no descrition>
ENSCJAG00000036479	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL285268.1:1:124497:1	86732	86895	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036949	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28892479	28892779	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030922	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	58355426	58355532	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036483	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	171361192	171361488	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036272	NOVEL	snRNA	U2	scaffold:C_jacchus3.2.1:GL285320.1:1:77073:1	5717	5874	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000027063	NOVEL	miRNA	ENSCJAG00000027063	chromosome:C_jacchus3.2.1:2:1:204313951:1	31615025	31615119	R	<no descrition>
ENSCJAG00000037403	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	151194753	151195049	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024899	NOVEL	miRNA	ENSCJAG00000024899	chromosome:C_jacchus3.2.1:5:1:159171411:1	52610958	52611102	D	<no descrition>
ENSCJAG00000032519	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	189994719	189994882	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026042	NOVEL	miRNA	ENSCJAG00000026042	chromosome:C_jacchus3.2.1:13:1:117903854:1	1489614	1489694	D	<no descrition>
ENSCJAG00000029825	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	72127012	72127117	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027533	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	13203081	13203183	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035312	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	23139052	23139157	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025496	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	78766686	78766792	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029314	NOVEL	miRNA	ENSCJAG00000029314	chromosome:C_jacchus3.2.1:21:1:50472720:1	16819416	16819500	R	<no descrition>
ENSCJAG00000029055	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	55834193	55834356	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036296	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	86905717	86906013	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030542	NOVEL	miRNA	ENSCJAG00000030542	chromosome:C_jacchus3.2.1:15:1:98464013:1	47892718	47892836	R	<no descrition>
ENSCJAG00000023558	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:21:1:50472720:1	40286212	40286316	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024443	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	44098823	44098986	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030403	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	82452595	82452745	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023951	NOVEL	miRNA	ENSCJAG00000023951	chromosome:C_jacchus3.2.1:2:1:204313951:1	59424978	59425046	R	<no descrition>
ENSCJAG00000037387	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	15393042	15393336	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028126	NOVEL	snoRNA	SNORA20	chromosome:C_jacchus3.2.1:4:1:171630274:1	160856257	160856388	R	Small nucleolar RNA SNORA20 [Source:RFAM;Acc:RF00401]
ENSCJAG00000025854	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	25845145	25845242	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036891	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286234.1:1:110629:1	35495	35593	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029221	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	77824271	77824433	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036108	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	1234655	1234951	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025622	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	91608004	91608110	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028506	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	89010039	89010158	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030844	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	4886230	4886336	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030843	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	113922960	113923066	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038071	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286226.1:1:129224:1	97526	97816	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031161	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29558192	29558303	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023653	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	98105173	98105282	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037591	NOVEL	miRNA	ENSCJAG00000037591	chromosome:C_jacchus3.2.1:15:1:98464013:1	95844670	95844764	R	<no descrition>
ENSCJAG00000034385	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	147040903	147041013	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000032708	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	85796299	85796386	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028092	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	51227125	51227265	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032153	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	110930857	110930971	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032450	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	44820221	44820330	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033360	NOVEL	miRNA	ENSCJAG00000033360	chromosome:C_jacchus3.2.1:4:1:171630274:1	12952256	12952346	D	<no descrition>
ENSCJAG00000026668	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	89186474	89186586	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038053	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	3363411	3363704	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033116	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	94141820	94141926	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033062	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	144289267	144289367	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027459	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	1697241	1697381	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035593	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286467.1:1:206663:1	202485	202591	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032788	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:15:1:98464013:1	829500	829648	R	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000028225	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	131211737	131211839	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025722	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1323349	1323430	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000032213	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	27399621	27399722	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037965	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	62746165	62746458	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029443	NOVEL	miRNA	ENSCJAG00000029443	chromosome:C_jacchus3.2.1:2:1:204313951:1	59642500	59642593	R	<no descrition>
ENSCJAG00000034205	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	136522281	136522379	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027551	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	41829368	41829481	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028220	NOVEL	miRNA	ENSCJAG00000028220	chromosome:C_jacchus3.2.1:22:1:49145316:1	13069491	13069563	R	<no descrition>
ENSCJAG00000029171	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	67116147	67116258	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029251	NOVEL	snoRNA	SNORD66	chromosome:C_jacchus3.2.1:4:1:171630274:1	52674678	52674753	D	Small nucleolar RNA SNORD66 [Source:RFAM;Acc:RF00572]
ENSCJAG00000027161	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	113693818	113693942	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036129	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	72390802	72390870	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037456	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	136751264	136751558	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033263	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	20362081	20362182	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036778	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	111577013	111577301	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026751	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	94778131	94778249	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024721	NOVEL	snoRNA	SNORA76	chromosome:C_jacchus3.2.1:5:1:159171411:1	82898762	82898896	D	Small nucleolar RNA SNORA76 [Source:RFAM;Acc:RF00598]
ENSCJAG00000033706	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	14240530	14240634	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032429	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	203687	203787	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025410	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	64717821	64717984	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034933	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:8:1:128169293:1	96976122	96976193	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000024781	NOVEL	miRNA	ENSCJAG00000024781	chromosome:C_jacchus3.2.1:1:1:210400635:1	185596049	185596145	D	<no descrition>
ENSCJAG00000028214	NOVEL	snoRNA	SNORA74	chromosome:C_jacchus3.2.1:2:1:204313951:1	36148862	36149061	D	Small nucleolar RNA SNORA74 [Source:RFAM;Acc:RF00090]
ENSCJAG00000026024	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	1560926	1561023	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031097	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	3566111	3566219	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024147	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	105482618	105482758	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025370	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	45117088	45117194	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035754	NOVEL	miRNA	ENSCJAG00000035754	scaffold:C_jacchus3.2.1:GL285850.1:1:103053:1	95328	95429	D	<no descrition>
ENSCJAG00000029336	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1114956	1115052	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000036476	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	36972981	36973277	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024872	NOVEL	miRNA	ENSCJAG00000024872	chromosome:C_jacchus3.2.1:5:1:159171411:1	138219188	138219280	R	<no descrition>
ENSCJAG00000027248	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	8094987	8095088	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036449	NOVEL	miRNA	ENSCJAG00000036449	scaffold:C_jacchus3.2.1:GL286467.1:1:206663:1	55515	55597	R	<no descrition>
ENSCJAG00000030999	NOVEL	snoRNA	SNORD5	chromosome:C_jacchus3.2.1:16:1:96796970:1	53173465	53173540	R	Small nucleolar RNA SNORD5 [Source:RFAM;Acc:RF01161]
ENSCJAG00000036438	NOVEL	miRNA	ENSCJAG00000036438	chromosome:C_jacchus3.2.1:11:1:130397257:1	67713364	67713451	R	<no descrition>
ENSCJAG00000037497	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	43612855	43613152	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028646	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	88493052	88493192	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024323	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	29530955	29531061	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036687	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	6500499	6500794	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037355	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	139414249	139414544	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023760	NOVEL	miRNA	ENSCJAG00000023760	chromosome:C_jacchus3.2.1:5:1:159171411:1	139344228	139344373	R	<no descrition>
ENSCJAG00000027938	NOVEL	snoRNA	SNORD15	chromosome:C_jacchus3.2.1:11:1:130397257:1	63297010	63297157	R	Small nucleolar RNA SNORD15 [Source:RFAM;Acc:RF00067]
ENSCJAG00000030014	NOVEL	miRNA	ENSCJAG00000030014	chromosome:C_jacchus3.2.1:5:1:159171411:1	92689352	92689426	R	<no descrition>
ENSCJAG00000031920	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	110510629	110510690	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037966	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	725595	725708	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026228	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	87663535	87663647	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031958	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	191795163	191795268	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029763	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	167327525	167327641	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037954	NOVEL	miRNA	ENSCJAG00000037954	chromosome:C_jacchus3.2.1:3:1:190850796:1	49596611	49596694	D	<no descrition>
ENSCJAG00000031517	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	53193410	53193750	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029027	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	41117249	41117355	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035306	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	9465667	9465771	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025341	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	74705089	74705190	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028450	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	41276056	41276160	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029584	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	210350432	210350535	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035334	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	88182547	88182653	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023604	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:8:1:128169293:1	97895427	97895635	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025765	NOVEL	miRNA	ENSCJAG00000025765	chromosome:C_jacchus3.2.1:7:1:155834243:1	103416699	103416783	R	<no descrition>
ENSCJAG00000030419	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:11:1:130397257:1	28371912	28372211	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029213	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	115943571	115943663	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032874	NOVEL	miRNA	ENSCJAG00000032874	chromosome:C_jacchus3.2.1:3:1:190850796:1	190581776	190581884	R	<no descrition>
ENSCJAG00000028820	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	188834424	188834710	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036963	NOVEL	miRNA	ENSCJAG00000036963	scaffold:C_jacchus3.2.1:GL284723.1:1:26657:1	3509	3605	R	<no descrition>
ENSCJAG00000035826	NOVEL	miRNA	ENSCJAG00000035826	chromosome:C_jacchus3.2.1:1:1:210400635:1	83279435	83279514	R	<no descrition>
ENSCJAG00000030174	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	131909020	131909177	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030132	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:2:1:204313951:1	197523579	197523707	D	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000037522	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	80884287	80884583	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035520	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL290477.1:1:5516:1	871	968	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026134	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	21003457	21003563	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026808	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	61910705	61910808	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036849	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	92095913	92096209	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027400	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	10904858	10904961	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032964	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	127962030	127962133	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028945	NOVEL	miRNA	ENSCJAG00000028945	chromosome:C_jacchus3.2.1:11:1:130397257:1	128302319	128302394	D	<no descrition>
ENSCJAG00000030626	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	106019791	106019930	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025646	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:21:1:50472720:1	2011156	2011259	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024271	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	120663185	120663291	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038132	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	54370118	54370411	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037188	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	7641747	7642042	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037285	NOVEL	miRNA	ENSCJAG00000037285	scaffold:C_jacchus3.2.1:GL287585.1:1:4798:1	3986	4072	D	<no descrition>
ENSCJAG00000034444	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	125122792	125122909	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029855	NOVEL	miRNA	ENSCJAG00000029855	chromosome:C_jacchus3.2.1:10:1:132174527:1	13860039	13860122	D	<no descrition>
ENSCJAG00000037558	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286358.1:1:17342:1	9809	9915	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026370	NOVEL	miRNA	ENSCJAG00000026370	chromosome:C_jacchus3.2.1:3:1:190850796:1	170408598	170408695	D	<no descrition>
ENSCJAG00000026524	NOVEL	miRNA	ENSCJAG00000026524	chromosome:C_jacchus3.2.1:X:1:142054208:1	44540574	44540657	R	<no descrition>
ENSCJAG00000036458	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286437.1:1:146972:1	98684	98790	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025070	NOVEL	miRNA	ENSCJAG00000025070	chromosome:C_jacchus3.2.1:8:1:128169293:1	115411266	115411346	D	<no descrition>
ENSCJAG00000034709	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	43930072	43930207	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034020	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	27433047	27433148	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026733	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	85139209	85139326	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000031048	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	164430158	164430269	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035903	NOVEL	miRNA	ENSCJAG00000035903	chromosome:C_jacchus3.2.1:2:1:204313951:1	72714282	72714367	R	<no descrition>
ENSCJAG00000033916	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	79194135	79194237	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025709	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1105526	1105620	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000024358	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:2:1:204313951:1	129030145	129030274	R	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000023660	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	97262506	97262607	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031588	NOVEL	miRNA	ENSCJAG00000031588	chromosome:C_jacchus3.2.1:15:1:98464013:1	59813221	59813304	R	<no descrition>
ENSCJAG00000023985	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	37753073	37753179	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036553	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL289283.1:1:9048:1	3439	3542	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025034	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	100085921	100086039	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036040	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	97521477	97521779	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030665	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1124367	1124460	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000034876	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	47599412	47599514	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036614	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL288627.1:1:19502:1	65	237	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036637	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	81560498	81560794	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028470	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:19:1:49578535:1	17338604	17338890	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030030	NOVEL	miRNA	ENSCJAG00000030030	chromosome:C_jacchus3.2.1:1:1:210400635:1	48975926	48976025	D	<no descrition>
ENSCJAG00000036103	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	111285042	111285338	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026318	NOVEL	miRNA	ENSCJAG00000026318	chromosome:C_jacchus3.2.1:7:1:155834243:1	73279859	73279936	R	<no descrition>
ENSCJAG00000031379	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	63831807	63831913	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029962	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	149821543	149821655	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033592	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	88547788	88547891	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028855	NOVEL	miRNA	ENSCJAG00000028855	chromosome:C_jacchus3.2.1:12:1:121768101:1	14087693	14087783	D	<no descrition>
ENSCJAG00000035025	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	42309291	42309397	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028716	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	160775718	160776020	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037342	NOVEL	snRNA	U1	scaffold:C_jacchus3.2.1:GL286239.1:1:94471:1	44343	44503	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000031243	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	137305772	137305878	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023533	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	10698104	10698215	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030381	NOVEL	miRNA	ENSCJAG00000030381	chromosome:C_jacchus3.2.1:5:1:159171411:1	108924751	108924852	D	<no descrition>
ENSCJAG00000037175	NOVEL	miRNA	ENSCJAG00000037175	chromosome:C_jacchus3.2.1:10:1:132174527:1	66776309	66776393	R	<no descrition>
ENSCJAG00000025865	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	25354290	25354453	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034944	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	26220615	26220702	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026369	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	112235471	112235598	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037682	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	103170142	103170439	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024681	NOVEL	miRNA	ENSCJAG00000024681	chromosome:C_jacchus3.2.1:6:1:158406734:1	14243675	14243769	D	<no descrition>
ENSCJAG00000031071	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	149045504	149045645	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036186	NOVEL	miRNA	ENSCJAG00000036186	chromosome:C_jacchus3.2.1:7:1:155834243:1	108741803	108741875	D	<no descrition>
ENSCJAG00000034148	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	4930521	4930627	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030452	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	7997595	7997685	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027632	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	88501422	88501562	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028650	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	40098912	40099016	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025668	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	1875990	1876286	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000034268	NOVEL	miRNA	ENSCJAG00000034268	chromosome:C_jacchus3.2.1:8:1:128169293:1	111660119	111660203	R	<no descrition>
ENSCJAG00000026590	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	147890187	147890302	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028852	NOVEL	miRNA	ENSCJAG00000028852	chromosome:C_jacchus3.2.1:2:1:204313951:1	22905816	22905905	R	<no descrition>
ENSCJAG00000028417	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	105733487	105733583	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027736	NOVEL	miRNA	ENSCJAG00000027736	chromosome:C_jacchus3.2.1:11:1:130397257:1	91163926	91164017	D	<no descrition>
ENSCJAG00000027830	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	46392422	46392525	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034314	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	24803755	24803863	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033467	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	28903859	28903972	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036769	NOVEL	miRNA	ENSCJAG00000036769	chromosome:C_jacchus3.2.1:22:1:49145316:1	32854083	32854197	R	<no descrition>
ENSCJAG00000023567	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	77695318	77695421	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032869	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	174121834	174121938	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031751	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	136702375	136702471	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028443	NOVEL	miRNA	ENSCJAG00000028443	chromosome:C_jacchus3.2.1:1:1:210400635:1	106619546	106619636	D	<no descrition>
ENSCJAG00000026189	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	150791060	150791166	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029122	NOVEL	miRNA	ENSCJAG00000029122	chromosome:C_jacchus3.2.1:9:1:124281992:1	46678102	46678195	D	<no descrition>
ENSCJAG00000027666	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	109497841	109497947	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033988	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	83367779	83367885	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023991	NOVEL	miRNA	ENSCJAG00000023991	chromosome:C_jacchus3.2.1:1:1:210400635:1	181138635	181138705	R	<no descrition>
ENSCJAG00000029816	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:19:1:49578535:1	17493898	17494000	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031889	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	72800007	72800113	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027835	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	64089310	64089410	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037685	NOVEL	miRNA	ENSCJAG00000037685	chromosome:C_jacchus3.2.1:1:1:210400635:1	78101630	78101711	R	<no descrition>
ENSCJAG00000030059	NOVEL	miRNA	ENSCJAG00000030059	chromosome:C_jacchus3.2.1:7:1:155834243:1	56930173	56930289	R	<no descrition>
ENSCJAG00000035839	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	114157223	114157519	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028059	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	101492474	101492613	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026201	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	792389	792485	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033252	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	46833443	46833520	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026356	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	47847398	47847514	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037894	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286360.1:1:20453:1	12171	12275	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037329	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	76322886	76323177	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030805	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	93858122	93858221	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033639	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	19215065	19215172	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038036	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	12147157	12147451	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026693	NOVEL	snoRNA	SCARNA16	chromosome:C_jacchus3.2.1:6:1:158406734:1	111987356	111987543	R	Small Cajal body specific RNA 16 [Source:RFAM;Acc:RF00424]
ENSCJAG00000029446	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	141004612	141004715	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031015	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:15:1:98464013:1	84418989	84419116	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000037210	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	82168262	82168557	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029824	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	21594138	21594248	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030657	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	22966813	22966916	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030698	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	104102316	104102422	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035975	NOVEL	miRNA	ENSCJAG00000035975	chromosome:C_jacchus3.2.1:12:1:121768101:1	100257792	100257876	D	<no descrition>
ENSCJAG00000037971	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	99450167	99450465	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027642	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	56736252	56736355	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033764	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	51884681	51884780	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028784	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	10954784	10954901	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029741	NOVEL	miRNA	ENSCJAG00000029741	chromosome:C_jacchus3.2.1:1:1:210400635:1	184518359	184518443	D	<no descrition>
ENSCJAG00000023778	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	30731447	30731561	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027169	NOVEL	miRNA	ENSCJAG00000027169	chromosome:C_jacchus3.2.1:8:1:128169293:1	7884014	7884129	R	<no descrition>
ENSCJAG00000027225	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	158731852	158731963	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033117	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	4103099	4103205	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033168	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	18281815	18281920	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027575	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	39036191	39036297	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032189	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	22853235	22853347	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037520	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	37606667	37606958	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027318	NOVEL	miRNA	ENSCJAG00000027318	chromosome:C_jacchus3.2.1:1:1:210400635:1	172179774	172179883	R	<no descrition>
ENSCJAG00000035742	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	21663143	21663438	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026503	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	6791022	6791339	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033204	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	83991469	83991567	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027665	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	58761863	58761969	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028166	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	84257680	84257785	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027342	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1316404	1316485	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000024751	NOVEL	miRNA	ENSCJAG00000024751	chromosome:C_jacchus3.2.1:7:1:155834243:1	154132376	154132472	D	<no descrition>
ENSCJAG00000028395	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	72175448	72175515	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030494	NOVEL	miRNA	ENSCJAG00000030494	chromosome:C_jacchus3.2.1:13:1:117903854:1	8862338	8862422	D	<no descrition>
ENSCJAG00000026208	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	19168138	19168239	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035785	NOVEL	miRNA	ENSCJAG00000035785	chromosome:C_jacchus3.2.1:12:1:121768101:1	6999583	6999665	R	<no descrition>
ENSCJAG00000038107	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:10:1:132174527:1	60962116	60962177	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037980	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	4667987	4668281	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027527	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	5247727	5247844	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033975	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	4089181	4089296	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026842	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	109669081	109669184	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027281	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	20562928	20563012	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023731	NOVEL	snoRNA	SNORD43	chromosome:C_jacchus3.2.1:X:1:142054208:1	49712594	49712656	D	Small nucleolar RNA SNORD43 [Source:RFAM;Acc:RF00221]
ENSCJAG00000037413	NOVEL	miRNA	ENSCJAG00000037413	chromosome:C_jacchus3.2.1:7:1:155834243:1	99142358	99142455	R	<no descrition>
ENSCJAG00000036301	NOVEL	miRNA	ENSCJAG00000036301	chromosome:C_jacchus3.2.1:2:1:204313951:1	37553630	37553712	D	<no descrition>
ENSCJAG00000028700	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	98531384	98531504	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029378	NOVEL	miRNA	ENSCJAG00000029378	chromosome:C_jacchus3.2.1:X:1:142054208:1	97038000	97038089	R	<no descrition>
ENSCJAG00000029138	NOVEL	miRNA	ENSCJAG00000029138	chromosome:C_jacchus3.2.1:22:1:49145316:1	13069345	13069422	R	<no descrition>
ENSCJAG00000035972	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	70146260	70146556	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026857	NOVEL	miRNA	ENSCJAG00000026857	chromosome:C_jacchus3.2.1:3:1:190850796:1	80984911	80984978	D	<no descrition>
ENSCJAG00000035444	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	86169756	86169857	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029872	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:X:1:142054208:1	102464773	102464987	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000024921	NOVEL	miRNA	ENSCJAG00000024921	chromosome:C_jacchus3.2.1:12:1:121768101:1	2331778	2331871	R	<no descrition>
ENSCJAG00000030488	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	86022322	86022423	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033374	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	151509611	151509716	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035111	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:22:1:49145316:1	19427998	19428123	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000023856	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	1348001	1348107	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037371	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	41232630	41232913	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036897	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286306.1:1:8084:1	6153	6271	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030738	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	1097205	1097306	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029481	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	61879510	61879616	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037148	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286409.1:1:1291538:1	1122300	1122594	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030389	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	28726411	28726510	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037416	NOVEL	miRNA	ENSCJAG00000037416	scaffold:C_jacchus3.2.1:GL289154.1:1:13811:1	9442	9542	D	<no descrition>
ENSCJAG00000027176	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	77688925	77689039	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032338	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	9160003	9160109	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030874	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	51661234	51661340	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029126	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:19:1:49578535:1	46725942	46726098	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035262	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	36020178	36020286	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024136	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	33354606	33354723	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034762	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	32701376	32701479	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030309	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	280483	280589	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036437	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286145.1:1:23010:1	9277	9389	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000007441	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	9120199	9120333	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037166	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	33453376	33453672	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036338	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	35929603	35929899	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033596	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:18:1:47448759:1	27512632	27512744	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028482	NOVEL	miRNA	ENSCJAG00000028482	chromosome:C_jacchus3.2.1:14:1:108792865:1	100880094	100880192	R	<no descrition>
ENSCJAG00000036681	NOVEL	miRNA	ENSCJAG00000036681	scaffold:C_jacchus3.2.1:GL284771.1:1:11054:1	9785	9866	R	<no descrition>
ENSCJAG00000035612	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288720.1:1:8661:1	4360	4457	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029710	NOVEL	miRNA	ENSCJAG00000029710	chromosome:C_jacchus3.2.1:16:1:96796970:1	48347086	48347227	D	<no descrition>
ENSCJAG00000026082	NOVEL	miRNA	ENSCJAG00000026082	chromosome:C_jacchus3.2.1:16:1:96796970:1	13958888	13958983	D	<no descrition>
ENSCJAG00000027483	NOVEL	snoRNA	SNORA35	chromosome:C_jacchus3.2.1:X:1:142054208:1	103563625	103563753	R	Small nucleolar RNA SNORA35 [Source:RFAM;Acc:RF00566]
ENSCJAG00000028484	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:6:1:158406734:1	133099221	133099384	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000032017	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	45240428	45240542	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037158	NOVEL	miRNA	ENSCJAG00000037158	chromosome:C_jacchus3.2.1:15:1:98464013:1	43046315	43046410	R	<no descrition>
ENSCJAG00000028865	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	18353854	18353951	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032104	NOVEL	miRNA	ENSCJAG00000032104	chromosome:C_jacchus3.2.1:X:1:142054208:1	57509597	57509690	R	<no descrition>
ENSCJAG00000031478	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	94638250	94638350	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035929	NOVEL	miRNA	ENSCJAG00000035929	chromosome:C_jacchus3.2.1:9:1:124281992:1	56026041	56026154	D	<no descrition>
ENSCJAG00000023550	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	149235672	149235790	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034827	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	98481476	98481574	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031044	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	111939979	111940085	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024834	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:14:1:108792865:1	46858631	46858787	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036024	NOVEL	miRNA	ENSCJAG00000036024	chromosome:C_jacchus3.2.1:3:1:190850796:1	89432814	89432899	R	<no descrition>
ENSCJAG00000037947	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	35867886	35868184	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025563	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	155057145	155057251	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033644	NOVEL	snoRNA	SNORA26	chromosome:C_jacchus3.2.1:15:1:98464013:1	29189777	29189902	R	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]
ENSCJAG00000029044	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:4:1:171630274:1	13335801	13335926	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000030688	NOVEL	miRNA	ENSCJAG00000030688	chromosome:C_jacchus3.2.1:5:1:159171411:1	19889232	19889348	R	<no descrition>
ENSCJAG00000037679	NOVEL	miRNA	ENSCJAG00000037679	chromosome:C_jacchus3.2.1:7:1:155834243:1	147624719	147624814	R	<no descrition>
ENSCJAG00000029428	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	94977161	94977261	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029417	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	122906946	122907065	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035103	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	102026408	102026508	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035613	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	9313210	9313504	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037728	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	22909788	22910093	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023623	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	153482023	153482124	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036162	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	10584269	10584565	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028874	NOVEL	snoRNA	snoU6-53	chromosome:C_jacchus3.2.1:10:1:132174527:1	45563185	45563294	R	Small nucleolar RNA U6-53/MBII-28 [Source:RFAM;Acc:RF00377]
ENSCJAG00000028629	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	165745746	165745864	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028364	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:3:1:190850796:1	141095902	141096044	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000026391	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	189706369	189706475	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028104	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	2869741	2869824	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030124	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	10578600	10578938	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024294	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	26027913	26028073	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035645	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	114682659	114682954	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038146	NOVEL	miRNA	ENSCJAG00000038146	scaffold:C_jacchus3.2.1:GL286070.1:1:25013:1	11525	11615	R	<no descrition>
ENSCJAG00000027122	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	26720209	26720315	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038027	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	11863034	11863320	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036152	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	62256840	62257136	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024625	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	105337148	105337487	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026545	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	30758733	30758850	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024953	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:X:1:142054208:1	136008198	136008478	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032247	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	65398746	65398851	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024790	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	70941303	70941408	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037929	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:13:1:117903854:1	93857387	93857530	R	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000037805	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	57290291	57290589	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030187	NOVEL	miRNA	ENSCJAG00000030187	chromosome:C_jacchus3.2.1:14:1:108792865:1	51373256	51373350	D	<no descrition>
ENSCJAG00000035422	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	22216048	22216168	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027960	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	37529690	37529798	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025124	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	41205836	41205943	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037253	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	77426960	77427254	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028378	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:13:1:117903854:1	67050151	67050266	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028527	NOVEL	snoRNA	SNORD14	chromosome:C_jacchus3.2.1:11:1:130397257:1	20811816	20811900	R	Small nucleolar RNA SNORD14 [Source:RFAM;Acc:RF00016]
ENSCJAG00000029875	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	998546	998649	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026682	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	107973265	107973372	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037179	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	78483798	78484090	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038142	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	67453570	67453866	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032856	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	100536256	100536362	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037067	NOVEL	miRNA	ENSCJAG00000037067	chromosome:C_jacchus3.2.1:15:1:98464013:1	61052452	61052545	R	<no descrition>
ENSCJAG00000024669	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:13:1:117903854:1	12812078	12812193	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037823	NOVEL	miRNA	ENSCJAG00000037823	chromosome:C_jacchus3.2.1:2:1:204313951:1	134906729	134906820	D	<no descrition>
ENSCJAG00000037815	NOVEL	miRNA	ENSCJAG00000037815	chromosome:C_jacchus3.2.1:21:1:50472720:1	45442817	45442917	D	<no descrition>
ENSCJAG00000031899	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	76777285	76777388	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033781	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	8765472	8765578	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032178	NOVEL	snoRNA	snoMBII-202	chromosome:C_jacchus3.2.1:11:1:130397257:1	79098109	79098195	R	Small nucleolar RNA MBII-202 [Source:RFAM;Acc:RF00324]
ENSCJAG00000029797	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	62515300	62515408	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027315	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:4:1:171630274:1	200422	200550	D	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000036439	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	24827067	24827366	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024690	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	17329337	17329442	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030777	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	72321495	72321595	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030307	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	8357298	8357416	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034924	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	138157662	138157764	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033500	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:20:1:44557958:1	26314782	26314890	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026131	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	139592896	139593202	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037437	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285102.1:1:248894:1	142528	142630	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032586	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	44031047	44031153	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024645	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	77715341	77715450	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033228	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	4090396	4090510	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025937	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:X:1:142054208:1	140826299	140826433	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000037430	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	5683692	5683987	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027798	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	76717863	76717964	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027179	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	45896453	45896548	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027061	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	113601920	113602028	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037650	NOVEL	miRNA	ENSCJAG00000037650	chromosome:C_jacchus3.2.1:7:1:155834243:1	33725962	33726038	D	<no descrition>
ENSCJAG00000026674	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	49421793	49422085	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000023687	NOVEL	miRNA	ENSCJAG00000023687	chromosome:C_jacchus3.2.1:1:1:210400635:1	13176547	13176624	R	<no descrition>
ENSCJAG00000025255	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	22202229	22202337	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033230	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	297880	297977	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025743	NOVEL	miRNA	ENSCJAG00000025743	chromosome:C_jacchus3.2.1:10:1:132174527:1	45967666	45967760	R	<no descrition>
ENSCJAG00000031618	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	84422094	84422199	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025744	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:18:1:47448759:1	33117380	33117459	D	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000034671	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	31419700	31419801	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028912	NOVEL	snRNA	U11	chromosome:C_jacchus3.2.1:7:1:155834243:1	62852628	62852761	D	U11 spliceosomal RNA [Source:RFAM;Acc:RF00548]
ENSCJAG00000034982	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	2890391	2890491	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037473	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	27615820	27615920	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036684	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	57533438	57533732	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023773	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1348746	1348827	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000035917	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	44713758	44713837	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026060	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	2743799	2743938	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030399	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29127843	29127961	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025620	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	4958566	4958677	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035196	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	70778046	70778130	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028571	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	94122294	94122397	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026270	NOVEL	miRNA	ENSCJAG00000026270	chromosome:C_jacchus3.2.1:2:1:204313951:1	123455757	123455840	D	<no descrition>
ENSCJAG00000024590	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:22:1:49145316:1	13727488	13727591	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035764	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	50720220	50720510	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031228	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:2:1:204313951:1	132160756	132160819	D	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000024932	NOVEL	miRNA	ENSCJAG00000024932	chromosome:C_jacchus3.2.1:10:1:132174527:1	55223609	55223705	R	<no descrition>
ENSCJAG00000027583	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	33881186	33881293	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029394	NOVEL	snoRNA	SNORA27	chromosome:C_jacchus3.2.1:5:1:159171411:1	140199264	140199392	D	Small nucleolar RNA SNORA27 [Source:RFAM;Acc:RF00443]
ENSCJAG00000028859	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	23129701	23129807	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036374	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL284710.1:1:67226:1	5664	5760	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033496	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	112325475	112325578	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027156	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126884833	126884907	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000025358	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	65391147	65391439	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025674	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	90906977	90907083	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037222	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	23699349	23699636	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026555	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	14917459	14917565	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023469	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	54201378	54201484	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026716	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	91886501	91886590	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033112	NOVEL	snoRNA	SNORA72	chromosome:C_jacchus3.2.1:19:1:49578535:1	878989	879109	R	Small nucleolar RNA SNORA72 [Source:RFAM;Acc:RF00139]
ENSCJAG00000032660	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	118910730	118910842	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035236	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:15:1:98464013:1	34011027	34011184	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037374	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	10820329	10820625	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030724	NOVEL	snoRNA	SNORD69	chromosome:C_jacchus3.2.1:15:1:98464013:1	28467168	28467244	D	Small nucleolar RNA SNORD69 [Source:RFAM;Acc:RF00574]
ENSCJAG00000031192	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	74022589	74022692	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037799	NOVEL	miRNA	ENSCJAG00000037799	scaffold:C_jacchus3.2.1:GL289861.1:1:5301:1	3538	3638	D	<no descrition>
ENSCJAG00000026258	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	88355467	88355598	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036054	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	44276128	44276418	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037717	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	15513740	15514035	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026125	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	77551450	77551780	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026686	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:14:1:108792865:1	9154719	9154927	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000036431	NOVEL	miRNA	ENSCJAG00000036431	chromosome:C_jacchus3.2.1:12:1:121768101:1	29317926	29318025	R	<no descrition>
ENSCJAG00000029522	NOVEL	snoRNA	SNORA62	chromosome:C_jacchus3.2.1:17:1:74750902:1	24162729	24162882	R	Small nucleolar RNA SNORA62/SNORA6 family [Source:RFAM;Acc:RF00091]
ENSCJAG00000029605	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:9:1:124281992:1	104031479	104031544	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000036936	NOVEL	miRNA	ENSCJAG00000036936	chromosome:C_jacchus3.2.1:10:1:132174527:1	60325104	60325192	R	<no descrition>
ENSCJAG00000029043	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	29262318	29262458	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037198	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	4380546	4380830	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030953	NOVEL	snoRNA	SCARNA11	chromosome:C_jacchus3.2.1:9:1:124281992:1	18349653	18349789	R	Small Cajal body specific RNA 11 [Source:RFAM;Acc:RF00564]
ENSCJAG00000029407	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:3:1:190850796:1	155842061	155842164	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023480	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:X:1:142054208:1	77464261	77464332	D	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000025429	NOVEL	miRNA	ENSCJAG00000025429	chromosome:C_jacchus3.2.1:X:1:142054208:1	16670459	16670556	R	<no descrition>
ENSCJAG00000036247	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	46405476	46405733	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027621	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	90929114	90929253	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029633	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	9981544	9981650	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037607	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL286181.1:1:76622:1	65771	65872	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036279	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	174060895	174061190	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033105	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	38646710	38646819	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026222	NOVEL	miRNA	ENSCJAG00000026222	chromosome:C_jacchus3.2.1:5:1:159171411:1	84550173	84550232	D	<no descrition>
ENSCJAG00000024096	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	26309826	26309932	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029307	NOVEL	miRNA	ENSCJAG00000029307	chromosome:C_jacchus3.2.1:6:1:158406734:1	135377833	135377902	R	<no descrition>
ENSCJAG00000036469	NOVEL	miRNA	ENSCJAG00000036469	chromosome:C_jacchus3.2.1:X:1:142054208:1	134449893	134449971	R	<no descrition>
ENSCJAG00000026175	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	21349840	21350116	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000031568	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	20357708	20357816	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036885	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	36727291	36727584	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024967	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	25236730	25236836	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033473	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	79709654	79709764	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036432	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	77177208	77177500	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036563	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	93614492	93614589	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037440	NOVEL	miRNA	ENSCJAG00000037440	chromosome:C_jacchus3.2.1:9:1:124281992:1	13267770	13267835	R	<no descrition>
ENSCJAG00000037791	NOVEL	miRNA	ENSCJAG00000037791	chromosome:C_jacchus3.2.1:9:1:124281992:1	99402172	99402238	D	<no descrition>
ENSCJAG00000035434	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	35219938	35220062	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026187	NOVEL	snoRNA	SNORD11B	chromosome:C_jacchus3.2.1:6:1:158406734:1	117903475	117903559	D	Small nucleolar RNA SNORD11B [Source:RFAM;Acc:RF01192]
ENSCJAG00000029323	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	94877921	94878018	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027641	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:13:1:117903854:1	47990720	47990820	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000027541	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	128748542	128748643	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000030875	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	112274109	112274210	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032001	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:14:1:108792865:1	53382651	53382714	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037757	NOVEL	snRNA	U5	scaffold:C_jacchus3.2.1:GL286438.1:1:112050:1	69550	69664	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000032411	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	24700157	24700241	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035637	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	145001188	145001481	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034761	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	43229805	43229911	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025572	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	42432494	42432617	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027089	NOVEL	miRNA	ENSCJAG00000027089	chromosome:C_jacchus3.2.1:X:1:142054208:1	23565256	23565350	R	<no descrition>
ENSCJAG00000037467	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285020.1:1:44156:1	32733	32839	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028932	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	57331774	57331876	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000028805	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	20132014	20132150	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024786	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	24180658	24180759	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023526	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	87664041	87664154	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032403	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	40548882	40548988	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030102	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126890483	126890554	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000028867	NOVEL	miRNA	ENSCJAG00000028867	chromosome:C_jacchus3.2.1:4:1:171630274:1	1725089	1725190	R	<no descrition>
ENSCJAG00000027943	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:5:1:159171411:1	53837423	53837484	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000027697	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:13:1:117903854:1	89169271	89169485	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000025763	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	169125078	169125185	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032144	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	194048151	194048247	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024818	NOVEL	miRNA	ENSCJAG00000024818	chromosome:C_jacchus3.2.1:7:1:155834243:1	21846537	21846633	D	<no descrition>
ENSCJAG00000029275	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	45582247	45582384	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029050	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	134662822	134662925	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029634	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	55625227	55625333	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029721	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	28731669	28731787	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025320	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	55721179	55721319	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026637	NOVEL	miRNA	ENSCJAG00000026637	chromosome:C_jacchus3.2.1:8:1:128169293:1	54807836	54807968	D	<no descrition>
ENSCJAG00000026428	NOVEL	miRNA	ENSCJAG00000026428	chromosome:C_jacchus3.2.1:15:1:98464013:1	94608433	94608525	D	<no descrition>
ENSCJAG00000036586	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	57232570	57232866	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033807	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	42098646	42098747	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031443	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	62737843	62737944	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030052	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	146097540	146097658	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036440	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	5277326	5277618	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031065	NOVEL	miRNA	ENSCJAG00000031065	chromosome:C_jacchus3.2.1:X:1:142054208:1	137023021	137023112	R	<no descrition>
ENSCJAG00000023496	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	85338328	85338434	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035779	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	13695851	13696149	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035692	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL285273.1:1:13526:1	12159	12254	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036400	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286360.1:1:20453:1	16108	16406	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037964	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	38884211	38884506	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028729	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	12167225	12167328	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034842	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	93143439	93143547	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024769	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	78881250	78881344	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025803	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:9:1:124281992:1	86360691	86360832	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024623	NOVEL	miRNA	ENSCJAG00000024623	chromosome:C_jacchus3.2.1:4:1:171630274:1	53940655	53940742	R	<no descrition>
ENSCJAG00000024553	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	37509792	37509894	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035934	NOVEL	miRNA	ENSCJAG00000035934	scaffold:C_jacchus3.2.1:GL289634.1:1:6635:1	132	228	D	<no descrition>
ENSCJAG00000034181	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	88699956	88700058	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029191	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	32268494	32268595	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025501	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	12511500	12511603	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036953	NOVEL	miRNA	ENSCJAG00000036953	chromosome:C_jacchus3.2.1:18:1:47448759:1	14056443	14056526	R	<no descrition>
ENSCJAG00000033339	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:9:1:124281992:1	86488915	86489221	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028368	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:18:1:47448759:1	41835458	41835592	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000027591	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	89957985	89958122	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027509	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:3:1:190850796:1	106295915	106296055	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027444	NOVEL	miRNA	ENSCJAG00000027444	chromosome:C_jacchus3.2.1:3:1:190850796:1	151012726	151012784	R	<no descrition>
ENSCJAG00000035161	NOVEL	snoRNA	SNORA75	chromosome:C_jacchus3.2.1:10:1:132174527:1	44487212	44487342	R	Small nucleolar RNA SNORA75 [Source:RFAM;Acc:RF00072]
ENSCJAG00000028319	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	36093019	36093124	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024308	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	138472454	138472560	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037612	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	21442528	21442819	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023976	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	78227635	78227736	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035480	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:4:1:171630274:1	155588168	155588293	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000026917	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	57049019	57049133	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030356	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	76944665	76944825	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035912	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	17946287	17946584	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028094	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:20:1:44557958:1	29281089	29281215	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000031626	NOVEL	snoRNA	snoMe28S-Am2634	chromosome:C_jacchus3.2.1:1:1:210400635:1	141585612	141585673	D	Small nucleolar RNA Me28S-Am2634 [Source:RFAM;Acc:RF00537]
ENSCJAG00000034987	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	125280068	125280171	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037851	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	19105401	19105697	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024226	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	39290657	39290797	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024487	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	144347877	144348007	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036215	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	48032528	48032820	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024412	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	92131351	92131457	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037788	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286219.1:1:94819:1	12540	12836	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030707	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	110922402	110922542	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028745	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	98119038	98119139	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035008	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	151331451	151331557	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026786	NOVEL	miRNA	ENSCJAG00000026786	chromosome:C_jacchus3.2.1:7:1:155834243:1	591059	591182	R	<no descrition>
ENSCJAG00000033362	NOVEL	miRNA	ENSCJAG00000033362	chromosome:C_jacchus3.2.1:X:1:142054208:1	137160716	137160795	D	<no descrition>
ENSCJAG00000029200	NOVEL	snoRNA	SNORD56	chromosome:C_jacchus3.2.1:10:1:132174527:1	96603198	96603268	D	Small nucleolar RNA SNORD56 [Source:RFAM;Acc:RF00275]
ENSCJAG00000035960	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	36224305	36224543	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030306	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	22000940	22001046	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037065	NOVEL	snoRNA	SNORD23	chromosome:C_jacchus3.2.1:22:1:49145316:1	39677913	39678024	D	Small nucleolar RNA SNORD23 [Source:RFAM;Acc:RF00603]
ENSCJAG00000033705	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	22849196	22849295	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036973	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	879702	879998	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027874	NOVEL	miRNA	ENSCJAG00000027874	chromosome:C_jacchus3.2.1:11:1:130397257:1	44106778	44106864	D	<no descrition>
ENSCJAG00000033151	NOVEL	snoRNA	SNORA17	chromosome:C_jacchus3.2.1:9:1:124281992:1	61239748	61239869	D	Small nucleolar RNA SNORA17 [Source:RFAM;Acc:RF00560]
ENSCJAG00000030820	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	133122193	133122294	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029011	NOVEL	snoRNA	SNORA46	chromosome:C_jacchus3.2.1:20:1:44557958:1	12583436	12583570	R	Small nucleolar RNA SNORA46 [Source:RFAM;Acc:RF00404]
ENSCJAG00000036654	NOVEL	miRNA	ENSCJAG00000036654	chromosome:C_jacchus3.2.1:11:1:130397257:1	17655549	17655636	R	<no descrition>
ENSCJAG00000037225	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	84930853	84931139	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027197	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	46159479	46159592	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023904	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	44039893	44040012	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033556	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	146970536	146970648	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035227	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:3:1:190850796:1	122943232	122943341	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000027940	NOVEL	snoRNA	SNORD65	chromosome:C_jacchus3.2.1:8:1:128169293:1	32369061	32369133	R	Small nucleolar RNA SNORD65 [Source:RFAM;Acc:RF00571]
ENSCJAG00000034443	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	17261936	17262034	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037825	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	59748258	59748533	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023472	NOVEL	snoRNA	SNORA33	chromosome:C_jacchus3.2.1:14:1:108792865:1	81275760	81275888	D	Small nucleolar RNA SNORA33 [Source:RFAM;Acc:RF00438]
ENSCJAG00000028955	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	117858506	117858607	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032796	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	97494194	97494300	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000023838	NOVEL	snoRNA	SNORD123	chromosome:C_jacchus3.2.1:2:1:204313951:1	194547947	194548016	R	Small nucleolar RNA SNORD123 [Source:RFAM;Acc:RF01156]
ENSCJAG00000036228	NOVEL	miRNA	ENSCJAG00000036228	chromosome:C_jacchus3.2.1:9:1:124281992:1	46504725	46504808	D	<no descrition>
ENSCJAG00000024170	NOVEL	miRNA	ENSCJAG00000024170	chromosome:C_jacchus3.2.1:13:1:117903854:1	96868345	96868424	D	<no descrition>
ENSCJAG00000035691	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	44973953	44974248	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025182	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	108721714	108721836	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030701	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	113492029	113492130	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030661	NOVEL	miRNA	ENSCJAG00000030661	chromosome:C_jacchus3.2.1:1:1:210400635:1	147658294	147658380	D	<no descrition>
ENSCJAG00000033503	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	109575683	109575761	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034207	NOVEL	miRNA	ENSCJAG00000034207	chromosome:C_jacchus3.2.1:3:1:190850796:1	36008350	36008454	R	<no descrition>
ENSCJAG00000036415	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	63509190	63509488	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030828	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	26389819	26389921	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030475	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	8969222	8969317	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026430	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	131739188	131739286	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036064	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	96912506	96912802	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000038140	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	45036767	45037063	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023529	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1328948	1329029	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000031021	NOVEL	miRNA	ENSCJAG00000031021	chromosome:C_jacchus3.2.1:3:1:190850796:1	172474598	172474707	D	<no descrition>
ENSCJAG00000035169	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:10:1:132174527:1	33035354	33035479	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000029479	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	19415868	19416008	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036532	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	4486592	4486887	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035730	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285161.1:1:13511:1	13231	13339	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037601	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	24937793	24938084	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028458	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	80339068	80339174	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027189	NOVEL	snoRNA	SNORD24	chromosome:C_jacchus3.2.1:1:1:210400635:1	177370981	177371055	R	Small nucleolar RNA SNORD24 [Source:RFAM;Acc:RF00069]
ENSCJAG00000036262	NOVEL	miRNA	ENSCJAG00000036262	chromosome:C_jacchus3.2.1:10:1:132174527:1	11390428	11390503	R	<no descrition>
ENSCJAG00000024732	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	64084337	64084448	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024314	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	35971863	35971966	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026091	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	50768934	50769029	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026956	NOVEL	snoRNA	snosnR60_Z15	chromosome:C_jacchus3.2.1:6:1:158406734:1	99200588	99200669	D	Small nucleolar RNA snR60/Z15/Z230/Z193/J17 [Source:RFAM;Acc:RF00309]
ENSCJAG00000031353	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	47053710	47053826	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025995	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:5:1:159171411:1	4071507	4071628	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000027519	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	49502678	49502780	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026653	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	23071217	23071339	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026648	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:1:1:210400635:1	35685149	35685243	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023636	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:7:1:155834243:1	89130476	89130571	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000037972	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	36736928	36737224	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036393	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	98552336	98552632	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033519	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	53271880	53271983	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024794	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	91688162	91688268	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024848	NOVEL	rRNA	5_8S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	111898990	111899134	R	5.8S ribosomal RNA [Source:RFAM;Acc:RF00002]
ENSCJAG00000030773	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:21:1:50472720:1	7838653	7838979	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000026971	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	155761599	155761705	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024352	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	11346380	11346520	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032545	NOVEL	miRNA	ENSCJAG00000032545	chromosome:C_jacchus3.2.1:13:1:117903854:1	62897869	62897989	R	<no descrition>
ENSCJAG00000032421	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	4584828	4584952	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030150	NOVEL	miRNA	ENSCJAG00000030150	chromosome:C_jacchus3.2.1:17:1:74750902:1	66961927	66962011	D	<no descrition>
ENSCJAG00000027792	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:5:1:159171411:1	9181238	9181453	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000032095	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	41810678	41810790	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028830	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	60869420	60869526	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033476	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	66517158	66517316	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035237	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	52765876	52765978	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025094	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	4064568	4064686	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029117	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	31411487	31411585	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037062	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	79612522	79612813	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027973	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	30677312	30677418	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031060	NOVEL	snoRNA	SNORD52	chromosome:C_jacchus3.2.1:4:1:171630274:1	32411408	32411474	D	Small nucleolar RNA SNORD52 [Source:RFAM;Acc:RF00276]
ENSCJAG00000037393	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	58877971	58878267	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033402	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	37940344	37940446	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025180	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	14890462	14890568	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031189	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	20569058	20569177	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024119	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	2371463	2371575	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036232	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	54251718	54252014	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036939	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	88363775	88364064	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028601	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:15:1:98464013:1	86192081	86192210	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000035908	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	10812688	10812984	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036719	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	69125	69216	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035347	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:3:1:190850796:1	6301672	6301808	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037638	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	83334866	83335162	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025213	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	4783302	4783402	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036861	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	4140985	4141281	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029355	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:20:1:44557958:1	5108047	5108153	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026349	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	104765545	104765685	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037713	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286435.1:1:511535:1	407939	408044	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036132	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	8818225	8818515	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031754	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	47315934	47316030	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036631	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:3:1:190850796:1	94752858	94752919	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037481	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL286660.1:1:17277:1	12970	13110	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025971	NOVEL	miRNA	ENSCJAG00000025971	chromosome:C_jacchus3.2.1:16:1:96796970:1	78683662	78683803	R	<no descrition>
ENSCJAG00000031204	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	1569066	1569170	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036066	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	76898798	76899094	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030154	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	108308617	108308745	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036792	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	27166231	27166522	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035959	NOVEL	miRNA	ENSCJAG00000035959	chromosome:C_jacchus3.2.1:2:1:204313951:1	175727253	175727359	D	<no descrition>
ENSCJAG00000024479	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	9759540	9759648	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031982	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	109020918	109021148	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030459	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1124844	1124939	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000029449	NOVEL	miRNA	ENSCJAG00000029449	chromosome:C_jacchus3.2.1:1:1:210400635:1	6515083	6515162	D	<no descrition>
ENSCJAG00000024097	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	142682517	142682632	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000029530	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	161242572	161242678	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031057	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:10:1:132174527:1	127670313	127670472	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035981	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	183165088	183165384	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024835	NOVEL	miRNA	ENSCJAG00000024835	chromosome:C_jacchus3.2.1:6:1:158406734:1	4851257	4851362	D	<no descrition>
ENSCJAG00000030732	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	6714984	6715090	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033454	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	36237477	36237574	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025247	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	143696963	143697282	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037215	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	53608777	53609070	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029432	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	21003942	21004048	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036485	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	94224103	94224396	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035921	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	124047102	124047396	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028517	NOVEL	miRNA	ENSCJAG00000028517	chromosome:C_jacchus3.2.1:3:1:190850796:1	129808616	129808697	R	<no descrition>
ENSCJAG00000036896	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL285437.1:1:151650:1	49672	49764	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034311	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:7:1:155834243:1	74174719	74174780	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000032056	NOVEL	snoRNA	SNORA57	chromosome:C_jacchus3.2.1:7:1:155834243:1	24286893	24286950	D	Small nucleolar RNA SNORA57 [Source:RFAM;Acc:RF00191]
ENSCJAG00000029049	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:7:1:155834243:1	47336571	47336886	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037279	NOVEL	miRNA	ENSCJAG00000037279	scaffold:C_jacchus3.2.1:GL286641.1:1:17986:1	7619	7708	D	<no descrition>
ENSCJAG00000028289	NOVEL	miRNA	ENSCJAG00000028289	chromosome:C_jacchus3.2.1:7:1:155834243:1	12316369	12316454	D	<no descrition>
ENSCJAG00000027186	NOVEL	snoRNA	SCARNA15	chromosome:C_jacchus3.2.1:8:1:128169293:1	118520718	118520844	D	Small Cajal body specific RNA 15 [Source:RFAM;Acc:RF00426]
ENSCJAG00000026323	NOVEL	miRNA	ENSCJAG00000026323	chromosome:C_jacchus3.2.1:6:1:158406734:1	18784519	18784627	R	<no descrition>
ENSCJAG00000034132	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	24078945	24079048	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028772	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:20:1:44557958:1	22522135	22522250	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037814	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	122945908	122946203	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025493	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:6:1:158406734:1	32714318	32714450	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000027976	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	94249372	94249484	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029510	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:16:1:96796970:1	22237776	22237879	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032323	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:20:1:44557958:1	21088917	21089087	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034358	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:11:1:130397257:1	64975239	64975367	R	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000033068	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	129942737	129942831	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031977	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	81969596	81969702	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025991	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	33534429	33534546	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037703	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL284820.1:1:20815:1	16630	16738	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029255	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	81580299	81580394	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028240	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	203783301	203783409	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024395	NOVEL	miRNA	ENSCJAG00000024395	chromosome:C_jacchus3.2.1:3:1:190850796:1	99078921	99079064	D	<no descrition>
ENSCJAG00000034956	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:2:1:204313951:1	72583238	72583352	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000028063	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	63038591	63038687	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029131	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:16:1:96796970:1	93872731	93872853	D	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000035773	NOVEL	snoRNA	snoZ178	chromosome:C_jacchus3.2.1:3:1:190850796:1	77948810	77948975	R	Small nucleolar RNA Z178 [Source:RFAM;Acc:RF00306]
ENSCJAG00000029403	NOVEL	miRNA	ENSCJAG00000029403	chromosome:C_jacchus3.2.1:13:1:117903854:1	97651377	97651461	D	<no descrition>
ENSCJAG00000032443	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	154571790	154571893	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026481	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	152733563	152733675	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031656	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	74718634	74718734	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029192	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	64398631	64398899	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024846	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	8731441	8731542	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034608	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:12:1:121768101:1	13365149	13365260	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000033622	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	2239159	2239265	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035374	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	11595053	11595161	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025768	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	8482208	8482314	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031262	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	58820072	58820178	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024597	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:1:1:210400635:1	140110613	140110745	D	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000023458	NOVEL	miRNA	ENSCJAG00000023458	chromosome:C_jacchus3.2.1:1:1:210400635:1	6514373	6514456	D	<no descrition>
ENSCJAG00000023806	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:8:1:128169293:1	31804465	31804574	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037031	NOVEL	snRNA	U4	scaffold:C_jacchus3.2.1:GL286707.1:1:11925:1	1843	1983	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027807	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	134548384	134548487	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024191	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	16991308	16991471	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026796	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	17620469	17620558	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031341	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	25686630	25686736	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028005	NOVEL	snoRNA	SNORD109A	chromosome:C_jacchus3.2.1:6:1:158406734:1	1375730	1375796	D	Small nucleolar RNA SNORD109A [Source:RFAM;Acc:RF01278]
ENSCJAG00000031767	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	1273912	1274017	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030500	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	40273105	40273211	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038007	NOVEL	miRNA	ENSCJAG00000038007	scaffold:C_jacchus3.2.1:GL286397.1:1:1361745:1	429156	429250	D	<no descrition>
ENSCJAG00000031041	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	5820896	5821002	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030858	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	137873767	137873930	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028172	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:16:1:96796970:1	58900608	58900755	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024190	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	148730522	148730629	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024634	NOVEL	miRNA	ENSCJAG00000024634	chromosome:C_jacchus3.2.1:1:1:210400635:1	157644829	157644924	D	<no descrition>
ENSCJAG00000036446	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	75359526	75359821	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032969	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	23183098	23183214	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000024987	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:16:1:96796970:1	22866504	22866607	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036450	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	23205759	23206044	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036675	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	23699977	23700272	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024531	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	26916410	26916516	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025838	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	19302198	19302301	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025125	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	80330019	80330120	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027612	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	82838609	82838744	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027716	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:14:1:108792865:1	37257042	37257145	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029963	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126892615	126892686	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000034326	NOVEL	snoRNA	snoR38	chromosome:C_jacchus3.2.1:5:1:159171411:1	125843665	125843748	D	Small nucleolar RNA R38 [Source:RFAM;Acc:RF00213]
ENSCJAG00000035861	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	140098128	140098425	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036176	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	35314891	35315186	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026848	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	113991107	113991247	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036246	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286355.1:1:20452:1	5360	5656	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027291	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	12470053	12470144	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035660	NOVEL	miRNA	ENSCJAG00000035660	chromosome:C_jacchus3.2.1:2:1:204313951:1	12640374	12640465	R	<no descrition>
ENSCJAG00000035937	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	19030479	19030773	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037885	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	13667723	13668018	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028042	NOVEL	snoRNA	snoU83B	chromosome:C_jacchus3.2.1:1:1:210400635:1	117871365	117871459	R	Small nucleolar RNA U83B [Source:RFAM;Acc:RF00593]
ENSCJAG00000033999	NOVEL	miRNA	ENSCJAG00000033999	chromosome:C_jacchus3.2.1:15:1:98464013:1	89794041	89794115	R	<no descrition>
ENSCJAG00000031681	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	55769778	55769885	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026440	NOVEL	snoRNA	SNORD50	chromosome:C_jacchus3.2.1:4:1:171630274:1	84653946	84654015	R	Small nucleolar RNA SNORD50 [Source:RFAM;Acc:RF00278]
ENSCJAG00000023662	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	144797890	144797990	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027009	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	20280428	20280534	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030408	NOVEL	miRNA	ENSCJAG00000030408	chromosome:C_jacchus3.2.1:9:1:124281992:1	11738691	11738827	R	<no descrition>
ENSCJAG00000025490	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	46930617	46930729	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025457	NOVEL	miRNA	ENSCJAG00000025457	chromosome:C_jacchus3.2.1:1:1:210400635:1	98039984	98040065	R	<no descrition>
ENSCJAG00000026054	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	183455855	183455964	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033887	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	63060609	63060727	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037755	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	14923452	14923749	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026179	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	92779470	92779588	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025801	NOVEL	miRNA	ENSCJAG00000025801	chromosome:C_jacchus3.2.1:13:1:117903854:1	85471173	85471271	R	<no descrition>
ENSCJAG00000036821	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	92041790	92042074	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026985	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:18:1:47448759:1	13528479	13528577	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027221	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	151546581	151546721	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028616	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	64532969	64533131	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028142	NOVEL	miRNA	ENSCJAG00000028142	chromosome:C_jacchus3.2.1:22:1:49145316:1	2339798	2339894	D	<no descrition>
ENSCJAG00000038049	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	389956	390250	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029031	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	95726383	95726490	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024266	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	125850769	125850868	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000035707	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286400.1:1:1252354:1	984229	984335	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032721	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	105948793	105948899	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029993	NOVEL	snoRNA	SNORD22	chromosome:C_jacchus3.2.1:11:1:130397257:1	118548165	118548290	R	Small nucleolar RNA SNORD22 [Source:RFAM;Acc:RF00099]
ENSCJAG00000036924	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	7344059	7344355	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031383	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	117034070	117034199	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034716	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29552445	29552569	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027180	NOVEL	snoRNA	SNORD5	chromosome:C_jacchus3.2.1:11:1:130397257:1	44107217	44107288	D	Small nucleolar RNA SNORD5 [Source:RFAM;Acc:RF01161]
ENSCJAG00000027239	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	75707759	75707854	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033726	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	29250576	29250688	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029404	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	114096389	114096552	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037405	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	25300581	25300877	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029132	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	124652218	124652324	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036633	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	7349066	7349368	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025265	NOVEL	snoRNA	SNORA2	chromosome:C_jacchus3.2.1:9:1:124281992:1	37396816	37396950	R	Small nucleolar RNA SNORA2/SNORA34 family [Source:RFAM;Acc:RF00410]
ENSCJAG00000037922	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	37817663	37817958	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030927	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	47378843	47379160	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024506	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	165892979	165893082	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023589	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	86605898	86606191	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037738	NOVEL	miRNA	ENSCJAG00000037738	chromosome:C_jacchus3.2.1:11:1:130397257:1	77581264	77581329	D	<no descrition>
ENSCJAG00000034121	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	21551649	21551754	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029642	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	311162	311264	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030860	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	38521354	38521455	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000038111	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	84533871	84534173	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028037	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:1:1:210400635:1	115746202	115746318	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000027594	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:2:1:204313951:1	81281960	81282101	R	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000025201	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126907863	126907934	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000036716	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL288167.1:1:19365:1	10560	10657	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037516	NOVEL	miRNA	ENSCJAG00000037516	chromosome:C_jacchus3.2.1:3:1:190850796:1	19899374	19899455	D	<no descrition>
ENSCJAG00000025914	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	156271822	156271932	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033458	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:10:1:132174527:1	122003862	122003940	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024213	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	25370712	25370826	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028185	NOVEL	miRNA	ENSCJAG00000028185	chromosome:C_jacchus3.2.1:11:1:130397257:1	17713436	17713521	D	<no descrition>
ENSCJAG00000025173	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	106437954	106438068	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037884	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	1122571	1122867	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029396	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:12:1:121768101:1	3624981	3625076	R	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000030818	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	46695038	46695154	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000023506	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	7547044	7547158	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000033081	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	76222847	76222945	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037809	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	26259701	26260001	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025921	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	14080188	14080350	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029474	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	191895380	191895731	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024024	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	66282206	66282312	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034406	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	148919268	148919323	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000034940	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	42373142	42373246	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024692	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	15234950	15235059	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026887	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	128830589	128830695	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025001	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:17:1:74750902:1	72190315	72190592	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025047	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	127437003	127437103	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036858	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	4666371	4666667	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034473	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	70854981	70855269	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035550	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	64498181	64498476	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029651	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	85296261	85296424	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028891	NOVEL	miRNA	ENSCJAG00000028891	chromosome:C_jacchus3.2.1:10:1:132174527:1	126942703	126942790	D	<no descrition>
ENSCJAG00000027012	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:12:1:121768101:1	62530297	62530429	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000028941	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	202528664	202528772	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029008	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	113964779	113964887	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036059	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	125047526	125047822	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034951	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	32589647	32589742	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028065	NOVEL	miRNA	ENSCJAG00000028065	chromosome:C_jacchus3.2.1:12:1:121768101:1	76264830	76264916	R	<no descrition>
ENSCJAG00000029057	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	28669003	28669097	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034795	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	62737764	62737868	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024617	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:17:1:74750902:1	7217701	7217804	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034241	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	23931407	23931545	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035851	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	64877033	64877329	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036410	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	53541952	53542247	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030097	NOVEL	miRNA	ENSCJAG00000030097	chromosome:C_jacchus3.2.1:5:1:159171411:1	95230496	95230567	D	<no descrition>
ENSCJAG00000034763	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	4378497	4378594	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025999	NOVEL	snoRNA	SNORD45	chromosome:C_jacchus3.2.1:19:1:49578535:1	7458139	7458221	D	Small nucleolar RNA SNORD45 [Source:RFAM;Acc:RF00279]
ENSCJAG00000025499	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	151145805	151145944	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000034683	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:14:1:108792865:1	97816924	97816983	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000037442	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	767829	768124	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029736	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	28311566	28311669	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024528	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	82294172	82294274	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026482	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	52909734	52909844	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037348	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28433379	28433672	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029173	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	100652656	100652762	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030935	NOVEL	miRNA	ENSCJAG00000030935	chromosome:C_jacchus3.2.1:22:1:49145316:1	26557067	26557133	D	<no descrition>
ENSCJAG00000027135	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:14:1:108792865:1	81483638	81483772	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000025783	NOVEL	miRNA	ENSCJAG00000025783	chromosome:C_jacchus3.2.1:12:1:121768101:1	89817371	89817476	D	<no descrition>
ENSCJAG00000025973	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	31152783	31152890	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025829	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	138903189	138903295	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037647	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	222807	222905	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025676	NOVEL	snoRNA	snoU54	chromosome:C_jacchus3.2.1:16:1:96796970:1	8992963	8993029	R	Small nucleolar RNA U54 [Source:RFAM;Acc:RF01277]
ENSCJAG00000026873	NOVEL	snoRNA	SNORD38	chromosome:C_jacchus3.2.1:1:1:210400635:1	4978942	4979010	D	Small nucleolar RNA SNORD38 [Source:RFAM;Acc:RF00212]
ENSCJAG00000024646	NOVEL	miRNA	ENSCJAG00000024646	chromosome:C_jacchus3.2.1:20:1:44557958:1	33782765	33782848	D	<no descrition>
ENSCJAG00000023503	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	63228887	63229049	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028038	NOVEL	snoRNA	SNORD18	chromosome:C_jacchus3.2.1:14:1:108792865:1	96527269	96527336	D	Small nucleolar RNA SNORD18 [Source:RFAM;Acc:RF00093]
ENSCJAG00000036841	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	22562796	22563092	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027193	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:1:1:210400635:1	98907854	98908047	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000024464	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	67326742	67326848	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023972	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	163203875	163204038	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028135	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:15:1:98464013:1	75378568	75378695	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000038121	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	141961033	141961328	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028023	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:17:1:74750902:1	67572642	67572743	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036527	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	5165324	5165606	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025249	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	1242859	1242964	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026479	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	110276538	110276641	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036385	NOVEL	miRNA	ENSCJAG00000036385	chromosome:C_jacchus3.2.1:2:1:204313951:1	150155968	150156051	D	<no descrition>
ENSCJAG00000033685	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	85774353	85774470	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026505	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	75638694	75638809	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037291	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL284963.1:1:43620:1	2064	2159	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036597	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	86445831	86446125	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035962	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	128496438	128496732	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023624	NOVEL	miRNA	ENSCJAG00000023624	chromosome:C_jacchus3.2.1:8:1:128169293:1	48383154	48383242	R	<no descrition>
ENSCJAG00000029867	NOVEL	snoRNA	SNORA24	chromosome:C_jacchus3.2.1:15:1:98464013:1	68321687	68321815	D	Small nucleolar RNA SNORA24 [Source:RFAM;Acc:RF00399]
ENSCJAG00000030411	NOVEL	miRNA	ENSCJAG00000030411	chromosome:C_jacchus3.2.1:10:1:132174527:1	126977433	126977516	D	<no descrition>
ENSCJAG00000029081	NOVEL	miRNA	ENSCJAG00000029081	chromosome:C_jacchus3.2.1:17:1:74750902:1	24069823	24069888	D	<no descrition>
ENSCJAG00000032898	NOVEL	snoRNA	SNORA9	chromosome:C_jacchus3.2.1:9:1:124281992:1	113392607	113392745	R	Small nucleolar RNA SNORA9 [Source:RFAM;Acc:RF00411]
ENSCJAG00000027566	NOVEL	miRNA	ENSCJAG00000027566	chromosome:C_jacchus3.2.1:6:1:158406734:1	81701002	81701088	D	<no descrition>
ENSCJAG00000033161	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	115913204	115913310	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028518	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1155246	1155335	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000036620	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	36030386	36030681	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037428	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	26197629	26197925	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032041	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	125586275	125586372	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030736	NOVEL	miRNA	ENSCJAG00000030736	chromosome:C_jacchus3.2.1:5:1:159171411:1	64186842	64186915	R	<no descrition>
ENSCJAG00000037830	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	82242065	82242357	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031110	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:12:1:121768101:1	70748086	70748226	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024061	NOVEL	miRNA	ENSCJAG00000024061	chromosome:C_jacchus3.2.1:14:1:108792865:1	83171484	83171565	D	<no descrition>
ENSCJAG00000029654	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	3308816	3308984	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000024051	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	122479139	122479251	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032492	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:4:1:171630274:1	138130952	138131021	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000028523	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	170983658	170983761	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027133	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	80579147	80579253	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032599	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	127120027	127120135	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034482	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:22:1:49145316:1	9969950	9970011	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000029263	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	188372152	188372314	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035788	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	135000574	135000883	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023903	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	47004898	47005004	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026516	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	144136035	144136137	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034486	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	43236896	43237001	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023990	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	14579566	14579684	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037796	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	43336459	43336755	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037041	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	116292638	116292937	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037570	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285395.1:1:5857:1	35	332	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037930	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	19783898	19784196	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029073	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	79044702	79044842	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000027515	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	79607281	79607389	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031543	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	116398160	116398266	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037651	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	23826050	23826345	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026357	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1338060	1338141	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000033756	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	54000178	54000281	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035551	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	91958943	91959076	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024360	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:21:1:50472720:1	30458791	30458897	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030970	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	35189176	35189278	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034819	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	79716608	79716745	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000027609	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:2:1:204313951:1	90986255	90986441	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000030597	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	69070476	69070591	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036570	NOVEL	miRNA	ENSCJAG00000036570	chromosome:C_jacchus3.2.1:1:1:210400635:1	36973773	36973863	D	<no descrition>
ENSCJAG00000032250	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:6:1:158406734:1	1357857	1358159	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000032786	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	2866500	2866583	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026974	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	151332805	151332917	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027030	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	10643709	10643850	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000032425	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:12:1:121768101:1	101008907	101008967	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000025281	NOVEL	miRNA	ENSCJAG00000025281	chromosome:C_jacchus3.2.1:X:1:142054208:1	29025309	29025418	R	<no descrition>
ENSCJAG00000037710	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:18:1:47448759:1	9851215	9851511	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035310	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	186195109	186195212	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000031828	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:11:1:130397257:1	55467165	55467236	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000037454	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL285843.1:1:72719:1	46906	47012	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038066	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	79120342	79120442	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027955	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	60969917	60970021	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032383	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	1489522	1489614	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034367	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	111731380	111731480	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028169	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	2147716	2147834	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026032	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	117187167	117187273	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030602	NOVEL	miRNA	ENSCJAG00000030602	chromosome:C_jacchus3.2.1:12:1:121768101:1	2335286	2335380	D	<no descrition>
ENSCJAG00000027520	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	61973012	61973118	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034125	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:4:1:171630274:1	69439225	69439433	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000024799	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	8607231	8607334	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030065	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	111116493	111116593	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030763	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	48797270	48797373	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034806	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	175242376	175242477	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026397	NOVEL	snoRNA	SNORA36	chromosome:C_jacchus3.2.1:14:1:108792865:1	37393536	37393664	D	Small nucleolar RNA SNORA36 family [Source:RFAM;Acc:RF00340]
ENSCJAG00000024552	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:5:1:159171411:1	110728533	110728606	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000037022	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	52627786	52628082	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023865	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	92762941	92763080	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030342	NOVEL	snoRNA	SCARNA20	chromosome:C_jacchus3.2.1:11:1:130397257:1	71978915	71979045	D	Small Cajal body specific RNA 20 [Source:RFAM;Acc:RF00601]
ENSCJAG00000036761	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	57117147	57117446	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024041	NOVEL	snoRNA	SNORA32	chromosome:C_jacchus3.2.1:11:1:130397257:1	44109691	44109812	D	Small nucleolar RNA SNORA32 [Source:RFAM;Acc:RF00421]
ENSCJAG00000037795	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	205162192	205162492	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000034670	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:1:1:210400635:1	123305895	123306058	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000026061	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:20:1:44557958:1	29393332	29393467	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000033990	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:4:1:171630274:1	160790577	160790702	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000031748	NOVEL	miRNA	ENSCJAG00000031748	chromosome:C_jacchus3.2.1:7:1:155834243:1	129117305	129117452	R	<no descrition>
ENSCJAG00000034593	NOVEL	snoRNA	SNORD25	chromosome:C_jacchus3.2.1:11:1:130397257:1	118550735	118550803	R	Small nucleolar RNA SNORD25 [Source:RFAM;Acc:RF00054]
ENSCJAG00000036032	NOVEL	miRNA	ENSCJAG00000036032	chromosome:C_jacchus3.2.1:2:1:204313951:1	14904703	14904785	D	<no descrition>
ENSCJAG00000027812	NOVEL	miRNA	ENSCJAG00000027812	chromosome:C_jacchus3.2.1:3:1:190850796:1	166644705	166644802	D	<no descrition>
ENSCJAG00000030614	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	22425376	22425494	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037298	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	7496279	7496575	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024484	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	72956568	72956870	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025435	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	31461842	31461947	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023752	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	97494013	97494311	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025177	NOVEL	miRNA	ENSCJAG00000025177	chromosome:C_jacchus3.2.1:X:1:142054208:1	122081912	122081986	R	<no descrition>
ENSCJAG00000030126	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	90776483	90776591	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024758	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:13:1:117903854:1	4443444	4443578	R	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000035828	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	83594109	83594407	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037827	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	38426667	38426963	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026875	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	66762401	66762506	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030022	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	89189358	89189464	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025628	NOVEL	snoRNA	SNORA68	chromosome:C_jacchus3.2.1:22:1:49145316:1	16901867	16901999	D	Small nucleolar RNA SNORA68 [Source:RFAM;Acc:RF00263]
ENSCJAG00000032536	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:16:1:96796970:1	21410749	21410810	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000036012	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	36992575	36992871	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036749	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:21:1:50472720:1	10366650	10366946	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030433	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	17863329	17863464	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023507	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	68156856	68156966	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030318	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:4:1:171630274:1	152144636	152144960	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000030548	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	95606040	95606143	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029604	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:1:1:210400635:1	179190318	179190458	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029513	NOVEL	snoRNA	snoU2_19	chromosome:C_jacchus3.2.1:8:1:128169293:1	68816102	68816181	R	Small nucleolar RNA U2-19 [Source:RFAM;Acc:RF00494]
ENSCJAG00000024135	NOVEL	snoRNA	SNORD86	chromosome:C_jacchus3.2.1:5:1:159171411:1	8445255	8445340	D	Small nucleolar RNA SNORD86 [Source:RFAM;Acc:RF00594]
ENSCJAG00000035793	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	45582751	45583047	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025434	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	28789013	28789119	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031613	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	1073221	1073325	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025824	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:22:1:49145316:1	32782263	32782403	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033148	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:4:1:171630274:1	121484353	121484492	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000037299	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	41738684	41738982	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035997	NOVEL	miRNA	ENSCJAG00000035997	chromosome:C_jacchus3.2.1:17:1:74750902:1	10911351	10911457	R	<no descrition>
ENSCJAG00000035575	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	340278	340395	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028358	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1336086	1336167	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000032734	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	99098676	99098785	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037236	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:5:1:159171411:1	77775441	77775576	R	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000026502	NOVEL	snoRNA	SNORD56	chromosome:C_jacchus3.2.1:6:1:158406734:1	65874117	65874187	D	Small nucleolar RNA SNORD56 [Source:RFAM;Acc:RF00275]
ENSCJAG00000030056	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	50794906	50795009	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027758	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	117295333	117295444	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036095	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	52135460	52135756	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024569	NOVEL	miRNA	ENSCJAG00000024569	chromosome:C_jacchus3.2.1:10:1:132174527:1	126972038	126972110	D	<no descrition>
ENSCJAG00000033894	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	152068298	152068405	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000026570	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:11:1:130397257:1	77117917	77118077	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000036921	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	107309407	107309704	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029190	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	84922944	84923056	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036320	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	18673036	18673332	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036970	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	160293630	160293925	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032780	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	172028879	172028966	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000038016	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286277.1:1:51577:1	3037	3329	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030121	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	92471023	92471129	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036342	NOVEL	miRNA	ENSCJAG00000036342	chromosome:C_jacchus3.2.1:2:1:204313951:1	30996791	30996878	D	<no descrition>
ENSCJAG00000035877	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	83695573	83695868	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026801	NOVEL	snoRNA	SNORA42	chromosome:C_jacchus3.2.1:14:1:108792865:1	98770067	98770182	D	Small nucleolar RNA SNORA42/SNORA80 family [Source:RFAM;Acc:RF00406]
ENSCJAG00000026460	NOVEL	miRNA	ENSCJAG00000026460	chromosome:C_jacchus3.2.1:14:1:108792865:1	43431586	43431671	R	<no descrition>
ENSCJAG00000027587	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	34477304	34477407	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036905	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	62699165	62699262	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000026074	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:6:1:158406734:1	39198816	39198917	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031510	NOVEL	miRNA	ENSCJAG00000031510	chromosome:C_jacchus3.2.1:X:1:142054208:1	134342512	134342640	R	<no descrition>
ENSCJAG00000025025	NOVEL	miRNA	ENSCJAG00000025025	chromosome:C_jacchus3.2.1:1:1:210400635:1	129712766	129712849	R	<no descrition>
ENSCJAG00000028779	NOVEL	miRNA	ENSCJAG00000028779	chromosome:C_jacchus3.2.1:15:1:98464013:1	23580993	23581067	D	<no descrition>
ENSCJAG00000036291	NOVEL	miRNA	ENSCJAG00000036291	chromosome:C_jacchus3.2.1:3:1:190850796:1	170692349	170692462	D	<no descrition>
ENSCJAG00000027789	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	63634279	63634386	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036423	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	34526860	34527155	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035735	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL288346.1:1:20607:1	13450	13749	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028263	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	139184369	139184475	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029019	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	2716795	2716896	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028608	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	10544042	10544148	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037642	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	68257592	68257880	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026095	NOVEL	snoRNA	SNORD74	chromosome:C_jacchus3.2.1:9:1:124281992:1	97423385	97423465	D	Small nucleolar RNA SNORD74 [Source:RFAM;Acc:RF00284]
ENSCJAG00000030983	NOVEL	snoRNA	U8	chromosome:C_jacchus3.2.1:4:1:171630274:1	40542360	40542503	R	U8 small nucleolar RNA [Source:RFAM;Acc:RF00096]
ENSCJAG00000027437	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	133506200	133506339	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029013	NOVEL	snoRNA	SNORD121A	chromosome:C_jacchus3.2.1:1:1:210400635:1	135679433	135679513	R	Small nucleolar RNA SNORD121A [Source:RFAM;Acc:RF01191]
ENSCJAG00000023802	NOVEL	miRNA	ENSCJAG00000023802	chromosome:C_jacchus3.2.1:X:1:142054208:1	48479887	48479964	D	<no descrition>
ENSCJAG00000034909	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:3:1:190850796:1	136723546	136723642	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035213	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	10336303	10336409	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035436	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	151206351	151206454	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034254	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	53418421	53418527	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027154	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	46324318	46324418	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025852	NOVEL	miRNA	ENSCJAG00000025852	chromosome:C_jacchus3.2.1:13:1:117903854:1	81789252	81789333	R	<no descrition>
ENSCJAG00000030465	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	55244116	55244234	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025418	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	114606246	114606387	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031663	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	35862404	35862510	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032870	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:5:1:159171411:1	89357239	89357334	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000031839	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	76099962	76100065	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033583	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	150825091	150825187	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034189	NOVEL	snoRNA	SNORA31	chromosome:C_jacchus3.2.1:7:1:155834243:1	70771687	70771767	D	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]
ENSCJAG00000028906	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	122898859	122898965	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024267	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:17:1:74750902:1	61018509	61018723	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000024706	NOVEL	snoRNA	SCARNA4	chromosome:C_jacchus3.2.1:6:1:158406734:1	28799318	28799437	R	Small Cajal body specific RNA 4 [Source:RFAM;Acc:RF00423]
ENSCJAG00000036051	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	112283807	112284101	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033969	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:18:1:47448759:1	33509177	33509270	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024236	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:8:1:128169293:1	15956468	15956596	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023807	NOVEL	miRNA	ENSCJAG00000023807	chromosome:C_jacchus3.2.1:1:1:210400635:1	76827627	76827713	D	<no descrition>
ENSCJAG00000027083	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:22:1:49145316:1	20555091	20555201	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025100	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	147110737	147110855	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027028	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	84229045	84229186	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025083	NOVEL	miRNA	ENSCJAG00000025083	chromosome:C_jacchus3.2.1:15:1:98464013:1	6556933	6557012	D	<no descrition>
ENSCJAG00000033853	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:12:1:121768101:1	102345259	102345338	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000031715	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:6:1:158406734:1	52444434	52444574	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000035733	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	31095559	31095855	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024415	NOVEL	miRNA	ENSCJAG00000024415	chromosome:C_jacchus3.2.1:7:1:155834243:1	74154137	74154243	D	<no descrition>
ENSCJAG00000036657	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	17358509	17358822	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033216	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	114751858	114751962	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032343	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:14:1:108792865:1	41350683	41350784	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000035577	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	93362067	93362354	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029293	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	109573068	109573177	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030587	NOVEL	miRNA	ENSCJAG00000030587	chromosome:C_jacchus3.2.1:3:1:190850796:1	118150202	118150345	D	<no descrition>
ENSCJAG00000019228	NOVEL	snoRNA	ACA59	chromosome:C_jacchus3.2.1:7:1:155834243:1	103373256	103373394	D	Small nucleolar RNA ACA59 [Source:RFAM;Acc:RF01293]
ENSCJAG00000027234	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1143917	1144012	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000037957	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL287442.1:1:64216:1	12112	12218	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032674	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	46057165	46057268	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036538	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	61945699	61945996	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037001	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:4:1:171630274:1	59235622	59235925	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027424	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	69470844	69470962	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027081	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	81274627	81274721	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037186	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	264294	264400	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028740	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:16:1:96796970:1	17901112	17901206	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031637	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:1:1:210400635:1	37342782	37342905	R	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000027895	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	151654665	151654767	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024787	NOVEL	miRNA	ENSCJAG00000024787	chromosome:C_jacchus3.2.1:X:1:142054208:1	103173300	103173379	D	<no descrition>
ENSCJAG00000029694	NOVEL	snoRNA	SNORA72	chromosome:C_jacchus3.2.1:16:1:96796970:1	96504320	96504451	D	Small nucleolar RNA SNORA72 [Source:RFAM;Acc:RF00139]
ENSCJAG00000024101	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:7:1:155834243:1	101195143	101195246	D	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037038	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL285567.1:1:115097:1	91681	91772	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000023795	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	33475982	33476145	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025384	NOVEL	snoRNA	SNORD115	chromosome:C_jacchus3.2.1:6:1:158406734:1	1289070	1289146	D	Small nucleolar RNA SNORD115 [Source:RFAM;Acc:RF00105]
ENSCJAG00000024140	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	95713714	95713820	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034002	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:10:1:132174527:1	108579588	108579651	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000025389	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	517912	518021	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025195	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	74201056	74201162	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000035939	NOVEL	miRNA	ENSCJAG00000035939	chromosome:C_jacchus3.2.1:3:1:190850796:1	56476884	56476968	R	<no descrition>
ENSCJAG00000028080	NOVEL	miRNA	ENSCJAG00000028080	chromosome:C_jacchus3.2.1:X:1:142054208:1	37876819	37876905	R	<no descrition>
ENSCJAG00000037541	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	128638545	128638841	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000031848	NOVEL	miRNA	ENSCJAG00000031848	chromosome:C_jacchus3.2.1:8:1:128169293:1	25057143	25057210	R	<no descrition>
ENSCJAG00000030385	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	33543401	33543564	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000024708	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:4:1:171630274:1	15505170	15505316	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028746	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	14119278	14119625	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033516	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	151517238	151517342	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032180	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	60411526	60411637	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026548	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29546553	29546657	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035635	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	11691730	11692026	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024261	NOVEL	miRNA	ENSCJAG00000024261	chromosome:C_jacchus3.2.1:1:1:210400635:1	106132562	106132627	R	<no descrition>
ENSCJAG00000030557	NOVEL	snoRNA	SNORD36	chromosome:C_jacchus3.2.1:3:1:190850796:1	117367130	117367202	D	Small nucleolar RNA SNORD36 [Source:RFAM;Acc:RF00049]
ENSCJAG00000034332	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	51330908	51331003	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026475	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1130628	1130721	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000030886	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	13349085	13349191	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027462	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	152170947	152171052	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000032731	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:18:1:47448759:1	21232112	21232173	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000034814	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	30966980	30967086	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036766	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	97851029	97851323	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029220	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	27692436	27692537	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032651	NOVEL	snoRNA	SNORA63	chromosome:C_jacchus3.2.1:19:1:49578535:1	25448514	25448602	R	Small nucleolar RNA SNORA63 [Source:RFAM;Acc:RF00092]
ENSCJAG00000029089	NOVEL	miRNA	ENSCJAG00000029089	chromosome:C_jacchus3.2.1:11:1:130397257:1	128448682	128448775	D	<no descrition>
ENSCJAG00000035890	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:14:1:108792865:1	88546933	88547228	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026414	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:10:1:132174527:1	78416608	78416748	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000026748	NOVEL	miRNA	ENSCJAG00000026748	chromosome:C_jacchus3.2.1:7:1:155834243:1	48767282	48767409	R	<no descrition>
ENSCJAG00000037982	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	7333666	7333962	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029240	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	70048031	70048137	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028050	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	85999768	85999874	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034294	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	62274114	62274215	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000028140	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	81865913	81866019	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037487	NOVEL	miRNA	ENSCJAG00000037487	chromosome:C_jacchus3.2.1:20:1:44557958:1	12737687	12737754	R	<no descrition>
ENSCJAG00000029067	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:3:1:190850796:1	261013	261188	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025488	NOVEL	miRNA	ENSCJAG00000025488	chromosome:C_jacchus3.2.1:6:1:158406734:1	42186369	42186478	R	<no descrition>
ENSCJAG00000031031	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:11:1:130397257:1	8861531	8861631	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000029298	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:7:1:155834243:1	128026932	128027047	D	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035124	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:14:1:108792865:1	33963854	33963938	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000026213	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	13343231	13343584	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000029725	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	121174269	121174379	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036872	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:X:1:142054208:1	42583880	42584176	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025864	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	143919471	143919605	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000028380	NOVEL	miRNA	ENSCJAG00000028380	chromosome:C_jacchus3.2.1:6:1:158406734:1	156259875	156259960	D	<no descrition>
ENSCJAG00000027625	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:1:1:210400635:1	99648032	99648138	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000031718	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:11:1:130397257:1	116316365	116316471	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025447	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:11:1:130397257:1	55163256	55163357	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000036944	NOVEL	miRNA	ENSCJAG00000036944	chromosome:C_jacchus3.2.1:15:1:98464013:1	72197228	72197304	R	<no descrition>
ENSCJAG00000027348	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	71836616	71836735	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032307	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:10:1:132174527:1	6655108	6655249	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000026088	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:10:1:132174527:1	59852563	59852670	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024796	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:12:1:121768101:1	91807021	91807172	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000035389	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	16515828	16515934	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028987	NOVEL	miRNA	ENSCJAG00000028987	chromosome:C_jacchus3.2.1:6:1:158406734:1	37079205	37079300	D	<no descrition>
ENSCJAG00000037076	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	39775789	39776084	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037036	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL286307.1:1:38943:1	8458	8756	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030899	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:13:1:117903854:1	94711863	94711964	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037644	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	57923924	57924230	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025233	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	34606130	34606234	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029482	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	45752356	45752462	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026501	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:2:1:204313951:1	110484512	110484676	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028764	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	14661519	14661623	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023523	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:11:1:130397257:1	42249325	42249427	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033889	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:5:1:159171411:1	96026085	96026186	R	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000023600	NOVEL	snoRNA	SNORD31	chromosome:C_jacchus3.2.1:11:1:130397257:1	118548552	118548620	R	Small nucleolar RNA SNORD31 [Source:RFAM;Acc:RF00089]
ENSCJAG00000025649	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	23414419	23414531	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000023678	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	5947030	5947185	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029346	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	87142909	87143242	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037876	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	182296061	182296357	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037987	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	230919	231025	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030395	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	107178581	107178682	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037462	NOVEL	miRNA	ENSCJAG00000037462	chromosome:C_jacchus3.2.1:11:1:130397257:1	10956531	10956595	R	<no descrition>
ENSCJAG00000037519	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	35297253	35297549	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000035255	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:14:1:108792865:1	31206166	31206381	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000037937	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:17:1:74750902:1	7402186	7402481	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026269	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	11450799	11450963	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000037526	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	217059	217164	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027787	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	54391821	54391930	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026112	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:9:1:124281992:1	111367358	111367469	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035718	NOVEL	snoRNA	U3	scaffold:C_jacchus3.2.1:GL286315.1:1:36398:1	5038	5243	D	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000031684	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	91660328	91660434	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026635	NOVEL	miRNA	ENSCJAG00000026635	chromosome:C_jacchus3.2.1:1:1:210400635:1	163487319	163487414	D	<no descrition>
ENSCJAG00000037832	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	100077084	100077379	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025825	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:18:1:47448759:1	5494662	5494802	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000029787	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	36602114	36602217	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025946	NOVEL	miRNA	ENSCJAG00000025946	chromosome:C_jacchus3.2.1:3:1:190850796:1	86358293	86358384	D	<no descrition>
ENSCJAG00000025723	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	17626062	17626170	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025934	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	7192252	7192354	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000024945	NOVEL	miRNA	ENSCJAG00000024945	chromosome:C_jacchus3.2.1:2:1:204313951:1	46477908	46478004	D	<no descrition>
ENSCJAG00000028995	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	120922243	120922349	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025008	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	29555298	29555407	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000032871	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	124311940	124312049	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026604	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	85428809	85428915	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027390	NOVEL	miRNA	ENSCJAG00000027390	chromosome:C_jacchus3.2.1:2:1:204313951:1	100959069	100959152	D	<no descrition>
ENSCJAG00000026997	NOVEL	miRNA	ENSCJAG00000026997	chromosome:C_jacchus3.2.1:11:1:130397257:1	96570772	96570847	D	<no descrition>
ENSCJAG00000026790	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	15322311	15322429	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036229	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	9237621	9237917	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036694	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	7976610	7976906	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027811	NOVEL	miRNA	ENSCJAG00000027811	chromosome:C_jacchus3.2.1:2:1:204313951:1	46850837	46850899	D	<no descrition>
ENSCJAG00000032959	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:1:1:210400635:1	103852663	103852724	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000029273	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	34174421	34174527	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028862	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	4980331	4980439	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032983	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:20:1:44557958:1	40183052	40183228	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000028655	NOVEL	misc_RNA	HAR1A	chromosome:C_jacchus3.2.1:5:1:159171411:1	57105265	57105396	D	Highly accelerated region 1A/1B [Source:RFAM;Acc:RF00635]
ENSCJAG00000023819	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	92540725	92540831	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037283	NOVEL	miRNA	ENSCJAG00000037283	chromosome:C_jacchus3.2.1:2:1:204313951:1	120981413	120981487	D	<no descrition>
ENSCJAG00000025900	NOVEL	snoRNA	SNORA73	chromosome:C_jacchus3.2.1:5:1:159171411:1	14424998	14425202	D	Small nucleolar RNA SNORA73 family [Source:RFAM;Acc:RF00045]
ENSCJAG00000024228	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:20:1:44557958:1	4034915	4035019	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000034177	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:2:1:204313951:1	17957069	17957159	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033998	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	26136932	26137035	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000034517	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	38110400	38110500	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000034878	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	75755095	75755194	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000037152	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	31605938	31606235	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032270	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:15:1:98464013:1	75267036	75267095	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000028638	NOVEL	snoRNA	SNORA72	chromosome:C_jacchus3.2.1:6:1:158406734:1	80114015	80114145	R	Small nucleolar RNA SNORA72 [Source:RFAM;Acc:RF00139]
ENSCJAG00000036685	NOVEL	miRNA	ENSCJAG00000036685	chromosome:C_jacchus3.2.1:10:1:132174527:1	126941703	126941813	R	<no descrition>
ENSCJAG00000028290	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:2:1:204313951:1	37621733	37621833	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000025822	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:21:1:50472720:1	29425792	29425882	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000024784	NOVEL	miRNA	ENSCJAG00000024784	chromosome:C_jacchus3.2.1:1:1:210400635:1	160913151	160913294	R	<no descrition>
ENSCJAG00000035859	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	153351448	153351743	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027196	NOVEL	miRNA	ENSCJAG00000027196	chromosome:C_jacchus3.2.1:1:1:210400635:1	64832017	64832099	D	<no descrition>
ENSCJAG00000032282	NOVEL	snoRNA	SNORA48	chromosome:C_jacchus3.2.1:12:1:121768101:1	15859282	15859396	D	Small nucleolar RNA SNORA48 [Source:RFAM;Acc:RF00554]
ENSCJAG00000033342	NOVEL	miRNA	ENSCJAG00000033342	chromosome:C_jacchus3.2.1:8:1:128169293:1	3115155	3115219	D	<no descrition>
ENSCJAG00000034016	NOVEL	snoRNA	SNORA25	chromosome:C_jacchus3.2.1:16:1:96796970:1	55639291	55639394	R	Small nucleolar RNA SNORA25 [Source:RFAM;Acc:RF00402]
ENSCJAG00000027427	NOVEL	snoRNA	SCARNA7	chromosome:C_jacchus3.2.1:17:1:74750902:1	16819046	16819371	D	Small Cajal body-specific RNA 7 [Source:RFAM;Acc:RF01295]
ENSCJAG00000026114	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:15:1:98464013:1	17230098	17230199	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032658	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	139197	139300	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027052	NOVEL	snoRNA	SCARNA16	chromosome:C_jacchus3.2.1:5:1:159171411:1	126374054	126374237	D	Small Cajal body specific RNA 16 [Source:RFAM;Acc:RF00424]
ENSCJAG00000025423	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	26344031	26344132	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035265	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:11:1:130397257:1	20386561	20386701	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000033186	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	24956713	24956811	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023765	NOVEL	snoRNA	SNORA71	chromosome:C_jacchus3.2.1:12:1:121768101:1	45640324	45640437	R	Small nucleolar RNA SNORA71 [Source:RFAM;Acc:RF00056]
ENSCJAG00000026927	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	98943303	98943400	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025464	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:X:1:142054208:1	62903175	62903338	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023999	NOVEL	miRNA	ENSCJAG00000023999	chromosome:C_jacchus3.2.1:7:1:155834243:1	37825257	37825349	R	<no descrition>
ENSCJAG00000032637	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	63220872	63220915	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000025011	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	49182248	49182388	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000030967	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	59991979	59992081	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038068	NOVEL	rRNA	5S_rRNA	scaffold:C_jacchus3.2.1:GL286242.1:1:115171:1	56423	56533	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037012	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286217.1:1:167161:1	145582	145687	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036118	NOVEL	misc_RNA	Metazoa_SRP	scaffold:C_jacchus3.2.1:GL285874.1:1:9056:1	1295	1590	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030981	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:12:1:121768101:1	38549839	38549946	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000025606	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:9:1:124281992:1	19002533	19002639	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000023961	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	74013983	74014123	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036045	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	141052078	141052374	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027908	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:3:1:190850796:1	183280378	183280714	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036311	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:15:1:98464013:1	18103028	18103322	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037709	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:16:1:96796970:1	7363546	7363845	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024349	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	56120446	56120765	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024238	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	92627456	92627567	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036503	NOVEL	miRNA	ENSCJAG00000036503	chromosome:C_jacchus3.2.1:1:1:210400635:1	167389650	167389736	R	<no descrition>
ENSCJAG00000037043	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	15495562	15495857	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024689	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:4:1:171630274:1	27997831	27997930	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000033128	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:12:1:121768101:1	65550538	65550837	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033198	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	49221294	49221406	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026233	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	115729031	115729138	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029218	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	46523688	46523987	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000024026	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	42397139	42397257	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036752	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	35779443	35779735	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000032169	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	1055378	1055456	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000035018	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:21:1:50472720:1	40833743	40833848	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000029284	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	98113794	98113895	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000029686	NOVEL	miRNA	ENSCJAG00000029686	chromosome:C_jacchus3.2.1:8:1:128169293:1	51033288	51033379	D	<no descrition>
ENSCJAG00000024227	NOVEL	miRNA	ENSCJAG00000024227	chromosome:C_jacchus3.2.1:2:1:204313951:1	88493826	88493913	R	<no descrition>
ENSCJAG00000038090	NOVEL	misc_RNA	Y_RNA	scaffold:C_jacchus3.2.1:GL286373.1:1:2117846:1	621918	622016	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032355	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:10:1:132174527:1	126829148	126829215	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000032815	NOVEL	snRNA	U6atac	chromosome:C_jacchus3.2.1:6:1:158406734:1	41662557	41662644	R	U6atac minor spliceosomal RNA [Source:RFAM;Acc:RF00619]
ENSCJAG00000036202	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:22:1:49145316:1	1585687	1585981	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000030272	NOVEL	snoRNA	SNORD116	chromosome:C_jacchus3.2.1:6:1:158406734:1	1112320	1112415	D	Small nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
ENSCJAG00000036395	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	126682288	126682583	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025850	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	13449799	13449915	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027560	NOVEL	snoRNA	SCARNA14	chromosome:C_jacchus3.2.1:1:1:210400635:1	75532203	75532338	D	Small Cajal body specific RNA 14 [Source:RFAM;Acc:RF00582]
ENSCJAG00000037742	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	1820382	1820676	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036351	NOVEL	miRNA	ENSCJAG00000036351	chromosome:C_jacchus3.2.1:X:1:142054208:1	122771208	122771292	R	<no descrition>
ENSCJAG00000032122	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:2:1:204313951:1	26816492	26816747	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028512	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:4:1:171630274:1	108737898	108738004	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030006	NOVEL	miRNA	ENSCJAG00000030006	chromosome:C_jacchus3.2.1:11:1:130397257:1	9010002	9010078	D	<no descrition>
ENSCJAG00000024593	NOVEL	snoRNA	SNORA21	chromosome:C_jacchus3.2.1:3:1:190850796:1	164466788	164466923	R	Small nucleolar RNA SNORA21 [Source:RFAM;Acc:RF00412]
ENSCJAG00000027236	NOVEL	snoRNA	ACA59	chromosome:C_jacchus3.2.1:7:1:155834243:1	47311022	47311172	D	Small nucleolar RNA ACA59 [Source:RFAM;Acc:RF01293]
ENSCJAG00000026695	NOVEL	miRNA	ENSCJAG00000026695	chromosome:C_jacchus3.2.1:3:1:190850796:1	131754944	131755063	D	<no descrition>
ENSCJAG00000027595	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:10:1:132174527:1	115183233	115183530	D	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000025644	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:17:1:74750902:1	48563494	48563597	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028924	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	61610185	61610293	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000036160	NOVEL	miRNA	ENSCJAG00000036160	chromosome:C_jacchus3.2.1:22:1:49145316:1	44888956	44889040	D	<no descrition>
ENSCJAG00000030824	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	84042833	84042951	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037616	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:9:1:124281992:1	20366214	20366503	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000026916	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:9:1:124281992:1	2868268	2868432	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000025980	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:18:1:47448759:1	40929767	40929869	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029531	NOVEL	miRNA	ENSCJAG00000029531	chromosome:C_jacchus3.2.1:13:1:117903854:1	7529672	7529768	D	<no descrition>
ENSCJAG00000028440	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:17:1:74750902:1	70387675	70387816	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025740	NOVEL	miRNA	ENSCJAG00000025740	chromosome:C_jacchus3.2.1:22:1:49145316:1	44885155	44885226	D	<no descrition>
ENSCJAG00000026588	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:14:1:108792865:1	74688259	74688399	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036916	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	108352965	108353261	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037761	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:13:1:117903854:1	100574291	100574585	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000033331	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	71682835	71682937	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033143	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:10:1:132174527:1	115215745	115215855	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000030832	NOVEL	snoRNA	SNORA21	chromosome:C_jacchus3.2.1:2:1:204313951:1	128733411	128733551	D	Small nucleolar RNA SNORA21 [Source:RFAM;Acc:RF00412]
ENSCJAG00000036773	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:3:1:190850796:1	79179684	79179980	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025580	NOVEL	miRNA	ENSCJAG00000025580	chromosome:C_jacchus3.2.1:14:1:108792865:1	16431971	16432048	R	<no descrition>
ENSCJAG00000035015	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	92433042	92433136	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037318	NOVEL	miRNA	ENSCJAG00000037318	chromosome:C_jacchus3.2.1:9:1:124281992:1	111244704	111244803	R	<no descrition>
ENSCJAG00000029754	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	41130679	41130784	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032812	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	8366976	8367071	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026855	NOVEL	snoRNA	ACA64	chromosome:C_jacchus3.2.1:12:1:121768101:1	2634562	2634688	R	Small nucleolar RNA ACA64 [Source:RFAM;Acc:RF01225]
ENSCJAG00000027894	NOVEL	snoRNA	SNORD77	chromosome:C_jacchus3.2.1:10:1:132174527:1	16782993	16783059	R	Small nucleolar RNA SNORD77 [Source:RFAM;Acc:RF00591]
ENSCJAG00000033940	NOVEL	snRNA	U4atac	chromosome:C_jacchus3.2.1:2:1:204313951:1	29455144	29455268	D	U4atac minor spliceosomal RNA [Source:RFAM;Acc:RF00618]
ENSCJAG00000034844	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:12:1:121768101:1	4629211	4629272	R	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000034502	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	39231140	39231234	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028715	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	97991355	97991461	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030567	NOVEL	snoRNA	SNORD126	chromosome:C_jacchus3.2.1:10:1:132174527:1	44699379	44699455	R	Small nucleolar RNA SNORD126 [Source:RFAM;Acc:RF01168]
ENSCJAG00000030167	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	85806096	85806259	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000033149	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:8:1:128169293:1	68621283	68621391	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028300	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	137097836	137097942	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030822	NOVEL	snoRNA	SNORD15	chromosome:C_jacchus3.2.1:11:1:130397257:1	63293548	63293696	R	Small nucleolar RNA SNORD15 [Source:RFAM;Acc:RF00067]
ENSCJAG00000037903	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	148154969	148155265	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037159	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	106508729	106509025	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024399	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	12892402	12892519	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000036356	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:7:1:155834243:1	66538106	66538402	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000036551	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	11332183	11332477	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025365	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	95927004	95927105	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031649	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	82305378	82305496	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037962	NOVEL	snRNA	U7	chromosome:C_jacchus3.2.1:18:1:47448759:1	41392617	41392695	D	U7 small nuclear RNA [Source:RFAM;Acc:RF00066]
ENSCJAG00000030441	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	150377065	150377399	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000028926	NOVEL	miRNA	ENSCJAG00000028926	chromosome:C_jacchus3.2.1:X:1:142054208:1	87056435	87056503	R	<no descrition>
ENSCJAG00000025497	NOVEL	snoRNA	SNORA70	chromosome:C_jacchus3.2.1:6:1:158406734:1	54037732	54037865	D	Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]
ENSCJAG00000027907	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:13:1:117903854:1	57376942	57377089	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029885	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	106545142	106545247	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000032892	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:14:1:108792865:1	31879922	31880023	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000033632	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:7:1:155834243:1	146224907	146224977	D	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000030234	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:12:1:121768101:1	71338862	71338958	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000025670	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:5:1:159171411:1	88574923	88575203	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000035680	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	12564676	12564967	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029884	NOVEL	snoRNA	SNORA40	chromosome:C_jacchus3.2.1:9:1:124281992:1	98870773	98870901	R	Small nucleolar RNA SNORA40 [Source:RFAM;Acc:RF00561]
ENSCJAG00000029986	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:5:1:159171411:1	136407193	136407284	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000031575	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	64313833	64313939	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026001	NOVEL	snRNA	U2	chromosome:C_jacchus3.2.1:3:1:190850796:1	128234693	128234890	D	U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]
ENSCJAG00000026287	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:8:1:128169293:1	105042371	105042484	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000031513	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	135561406	135561507	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000037086	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	222953	223059	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027912	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	147201106	147201213	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000036533	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:8:1:128169293:1	55431971	55432267	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029704	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:3:1:190850796:1	169103707	169103812	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000032285	NOVEL	snoRNA	ACA64	chromosome:C_jacchus3.2.1:6:1:158406734:1	49640131	49640272	D	Small nucleolar RNA ACA64 [Source:RFAM;Acc:RF01225]
ENSCJAG00000027796	NOVEL	miRNA	ENSCJAG00000027796	chromosome:C_jacchus3.2.1:X:1:142054208:1	24661867	24661938	R	<no descrition>
ENSCJAG00000026252	NOVEL	snoRNA	SNORA19	chromosome:C_jacchus3.2.1:12:1:121768101:1	106857001	106857133	R	Small nucleolar RNA SNORA19 [Source:RFAM;Acc:RF00413]
ENSCJAG00000026227	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:20:1:44557958:1	15620758	15621049	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000036797	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:10:1:132174527:1	29494929	29495224	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024548	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	107506734	107506830	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024183	NOVEL	miRNA	ENSCJAG00000024183	chromosome:C_jacchus3.2.1:10:1:132174527:1	126790920	126791012	D	<no descrition>
ENSCJAG00000029600	NOVEL	miRNA	ENSCJAG00000029600	chromosome:C_jacchus3.2.1:2:1:204313951:1	62922435	62922514	R	<no descrition>
ENSCJAG00000029645	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:X:1:142054208:1	25995921	25996037	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000024453	NOVEL	miRNA	ENSCJAG00000024453	chromosome:C_jacchus3.2.1:17:1:74750902:1	48128505	48128592	D	<no descrition>
ENSCJAG00000028324	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	52611820	52611932	D	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000027602	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	18585110	18585213	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000038135	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	60602762	60603059	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028959	NOVEL	snoRNA	SNORA52	chromosome:C_jacchus3.2.1:11:1:130397257:1	129713609	129713742	R	Small nucleolar RNA SNORA52 [Source:RFAM;Acc:RF00419]
ENSCJAG00000025021	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:10:1:132174527:1	127076473	127076687	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000023826	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	147346753	147346871	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000034744	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:X:1:142054208:1	52189624	52189727	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028045	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:6:1:158406734:1	35629760	35629866	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030549	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:16:1:96796970:1	51141880	51142163	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000033269	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:X:1:142054208:1	127690424	127690562	D	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000024185	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:7:1:155834243:1	114953568	114953674	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000033043	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:6:1:158406734:1	145057762	145057834	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000028528	NOVEL	miRNA	ENSCJAG00000028528	chromosome:C_jacchus3.2.1:3:1:190850796:1	84215376	84215470	R	<no descrition>
ENSCJAG00000036031	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:1:1:210400635:1	173711830	173712126	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000027525	NOVEL	miRNA	ENSCJAG00000027525	chromosome:C_jacchus3.2.1:6:1:158406734:1	123962669	123962791	D	<no descrition>
ENSCJAG00000024184	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:5:1:159171411:1	134734656	134734755	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029759	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	27243432	27243539	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035797	NOVEL	miRNA	ENSCJAG00000035797	chromosome:C_jacchus3.2.1:4:1:171630274:1	3815012	3815095	R	<no descrition>
ENSCJAG00000038138	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	73555147	73555436	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000037978	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:6:1:158406734:1	134670343	134670635	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029677	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:8:1:128169293:1	104343233	104343396	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000034395	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:1:1:210400635:1	12469811	12469917	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037584	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:12:1:121768101:1	28813485	28813781	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000024595	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:2:1:204313951:1	65425515	65425640	R	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000030868	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:5:1:159171411:1	95954533	95954686	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000030013	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:5:1:159171411:1	98397924	98398031	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028160	NOVEL	miRNA	ENSCJAG00000028160	chromosome:C_jacchus3.2.1:19:1:49578535:1	26536697	26536786	D	<no descrition>
ENSCJAG00000027871	NOVEL	snoRNA	SNORD41	chromosome:C_jacchus3.2.1:10:1:132174527:1	46809034	46809102	R	Small nucleolar RNA SNORD41 [Source:RFAM;Acc:RF00588]
ENSCJAG00000026245	NOVEL	miRNA	ENSCJAG00000026245	chromosome:C_jacchus3.2.1:22:1:49145316:1	16806715	16806790	D	<no descrition>
ENSCJAG00000025162	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:7:1:155834243:1	100851328	100851459	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000037452	NOVEL	miRNA	ENSCJAG00000037452	chromosome:C_jacchus3.2.1:2:1:204313951:1	130199807	130199883	D	<no descrition>
ENSCJAG00000036659	NOVEL	miRNA	ENSCJAG00000036659	chromosome:C_jacchus3.2.1:13:1:117903854:1	58889668	58889761	D	<no descrition>
ENSCJAG00000025242	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:2:1:204313951:1	821307	821446	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000036546	NOVEL	snoRNA	snoU13	scaffold:C_jacchus3.2.1:GL287863.1:1:67193:1	21984	22087	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000037747	NOVEL	snRNA	U6	scaffold:C_jacchus3.2.1:GL286456.1:1:293958:1	226488	226594	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029256	NOVEL	miRNA	ENSCJAG00000029256	chromosome:C_jacchus3.2.1:1:1:210400635:1	185596379	185596459	D	<no descrition>
ENSCJAG00000028314	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	39091606	39091791	R	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000029258	NOVEL	miRNA	ENSCJAG00000029258	chromosome:C_jacchus3.2.1:16:1:96796970:1	95025210	95025304	D	<no descrition>
ENSCJAG00000029368	NOVEL	snRNA	U1	chromosome:C_jacchus3.2.1:17:1:74750902:1	34274121	34274285	D	U1 spliceosomal RNA [Source:RFAM;Acc:RF00003]
ENSCJAG00000023617	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:X:1:142054208:1	42146353	42146491	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000025407	NOVEL	miRNA	ENSCJAG00000025407	chromosome:C_jacchus3.2.1:8:1:128169293:1	5073750	5073869	R	<no descrition>
ENSCJAG00000036365	NOVEL	miRNA	ENSCJAG00000036365	scaffold:C_jacchus3.2.1:GL285176.1:1:76252:1	6893	6993	R	<no descrition>
ENSCJAG00000028089	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:15:1:98464013:1	49647533	49647640	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000030789	NOVEL	miRNA	ENSCJAG00000030789	chromosome:C_jacchus3.2.1:10:1:132174527:1	89773175	89773264	R	<no descrition>
ENSCJAG00000036111	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:5:1:159171411:1	62148754	62149050	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029181	NOVEL	misc_RNA	7SK	chromosome:C_jacchus3.2.1:1:1:210400635:1	12062939	12063242	R	7SK RNA [Source:RFAM;Acc:RF00100]
ENSCJAG00000037782	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:20:1:44557958:1	23615036	23615333	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029890	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:15:1:98464013:1	60510260	60510342	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000025969	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:13:1:117903854:1	58307038	58307178	R	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]
ENSCJAG00000028814	NOVEL	miRNA	ENSCJAG00000028814	chromosome:C_jacchus3.2.1:20:1:44557958:1	7123536	7123618	R	<no descrition>
ENSCJAG00000032900	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:2:1:204313951:1	123904468	123904574	R	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000026593	NOVEL	miRNA	ENSCJAG00000026593	chromosome:C_jacchus3.2.1:1:1:210400635:1	130463739	130463824	R	<no descrition>
ENSCJAG00000023549	NOVEL	misc_RNA	Y_RNA	chromosome:C_jacchus3.2.1:19:1:49578535:1	1593673	1593774	R	Y RNA [Source:RFAM;Acc:RF00019]
ENSCJAG00000026824	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:6:1:158406734:1	93109133	93109251	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000027329	NOVEL	miRNA	ENSCJAG00000027329	chromosome:C_jacchus3.2.1:15:1:98464013:1	5838549	5838652	D	<no descrition>
ENSCJAG00000024165	NOVEL	snRNA	U5	chromosome:C_jacchus3.2.1:12:1:121768101:1	49404321	49404437	R	U5 spliceosomal RNA [Source:RFAM;Acc:RF00020]
ENSCJAG00000035498	NOVEL	snoRNA	SNORD112	chromosome:C_jacchus3.2.1:15:1:98464013:1	74774704	74774775	R	Small nucleolar RNA SNORD112 [Source:RFAM;Acc:RF01169]
ENSCJAG00000035467	NOVEL	rRNA	5S_rRNA	chromosome:C_jacchus3.2.1:4:1:171630274:1	37979453	37979572	D	5S ribosomal RNA [Source:RFAM;Acc:RF00001]
ENSCJAG00000035807	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	46981696	46981992	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000028537	NOVEL	miRNA	ENSCJAG00000028537	chromosome:C_jacchus3.2.1:14:1:108792865:1	90639548	90639657	D	<no descrition>
ENSCJAG00000033852	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:13:1:117903854:1	23893078	23893184	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000029453	NOVEL	snoRNA	SNORD101	chromosome:C_jacchus3.2.1:4:1:171630274:1	133198590	133198661	D	Small nucleolar RNA SNORD101 [Source:RFAM;Acc:RF00186]
ENSCJAG00000029544	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:14:1:108792865:1	35515020	35515122	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000027983	NOVEL	snoRNA	U3	chromosome:C_jacchus3.2.1:4:1:171630274:1	113592399	113592551	R	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]
ENSCJAG00000036378	NOVEL	miRNA	ENSCJAG00000036378	chromosome:C_jacchus3.2.1:18:1:47448759:1	5094052	5094126	R	<no descrition>
ENSCJAG00000035538	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:19:1:49578535:1	664492	664787	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000025220	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:2:1:204313951:1	96314860	96314991	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000028632	NOVEL	misc_RNA	Vault	chromosome:C_jacchus3.2.1:6:1:158406734:1	57563475	57563574	D	Vault RNA [Source:RFAM;Acc:RF00006]
ENSCJAG00000028006	NOVEL	miRNA	ENSCJAG00000028006	chromosome:C_jacchus3.2.1:5:1:159171411:1	108979655	108979764	D	<no descrition>
ENSCJAG00000037073	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:11:1:130397257:1	82187526	82187822	R	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000029593	NOVEL	snoRNA	SNORA51	chromosome:C_jacchus3.2.1:9:1:124281992:1	84882668	84882804	D	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]
ENSCJAG00000025964	NOVEL	miRNA	ENSCJAG00000025964	chromosome:C_jacchus3.2.1:5:1:159171411:1	96447186	96447294	D	<no descrition>
ENSCJAG00000030233	NOVEL	snoRNA	SNORA11	chromosome:C_jacchus3.2.1:12:1:121768101:1	50941697	50941825	D	Small nucleolar RNA SNORA11 [Source:RFAM;Acc:RF00614]
ENSCJAG00000025495	NOVEL	miRNA	ENSCJAG00000025495	chromosome:C_jacchus3.2.1:17:1:74750902:1	66346635	66346718	D	<no descrition>
ENSCJAG00000036627	NOVEL	misc_RNA	Metazoa_SRP	chromosome:C_jacchus3.2.1:2:1:204313951:1	11088237	11088534	D	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]
ENSCJAG00000023736	NOVEL	snRNA	U6	chromosome:C_jacchus3.2.1:19:1:49578535:1	12989498	12989602	D	U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]
ENSCJAG00000028622	NOVEL	snoRNA	snoU13	chromosome:C_jacchus3.2.1:9:1:124281992:1	66906155	66906254	R	Small nucleolar RNA U13 [Source:RFAM;Acc:RF01210]
ENSCJAG00000029002	NOVEL	snoRNA	SNORA18	chromosome:C_jacchus3.2.1:17:1:74750902:1	967944	968075	D	Small nucleolar RNA SNORA18 [Source:RFAM;Acc:RF00425]
ENSCJAG00000029359	NOVEL	snoRNA	SNORD113	chromosome:C_jacchus3.2.1:10:1:132174527:1	126909159	126909233	D	Small nucleolar RNA SNORD113/SNORD114 family [Source:RFAM;Acc:RF00181]
ENSCJAG00000029272	NOVEL	snRNA	U4	chromosome:C_jacchus3.2.1:5:1:159171411:1	50647657	50647798	D	U4 spliceosomal RNA [Source:RFAM;Acc:RF00015]