-- dump date 20250517_150207 -- class Genbank::Contig -- table contig -- table main -- field 1 id -- field 2 chromosome -- field 3 country -- field 4 date -- field 5 dblink -- field 6 file -- field 7 form -- field 8 isolate -- field 9 isolation_source -- field 10 length -- field 11 mol_type -- field 12 organism -- field 13 reference -- field 14 seq_dir -- field 15 taxid -- field 16 taxo_group -- field 17 type -- field 18 type_material -- header -- id chromosome country date dblink file form isolate isolation_source length mol_type organism reference seq_dir taxid taxo_group type type_material NC_085908.1 1 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085908.1.raw linear CBS 11374 biogas reactor 3724095 genomic DNA Kwoniella shivajii 1 (bases 1 to 3724095) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 3724095) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 3724095) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 3724095) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 3724095) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 3724095) Heitman,J.3 (bases 1 to 3724095) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 3724095) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085909.1 2 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085909.1.raw linear CBS 11374 biogas reactor 2374439 genomic DNA Kwoniella shivajii 1 (bases 1 to 2374439) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 2374439) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 2374439) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 2374439) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 2374439) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 2374439) Heitman,J.3 (bases 1 to 2374439) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 2374439) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085910.1 3 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085910.1.raw linear CBS 11374 biogas reactor 2170389 genomic DNA Kwoniella shivajii 1 (bases 1 to 2170389) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 2170389) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 2170389) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 2170389) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 2170389) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 2170389) Heitman,J.3 (bases 1 to 2170389) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 2170389) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085911.1 4 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085911.1.raw linear CBS 11374 biogas reactor 2078303 genomic DNA Kwoniella shivajii 1 (bases 1 to 2078303) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 2078303) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 2078303) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 2078303) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 2078303) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 2078303) Heitman,J.3 (bases 1 to 2078303) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 2078303) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085912.1 5 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085912.1.raw linear CBS 11374 biogas reactor 2021889 genomic DNA Kwoniella shivajii 1 (bases 1 to 2021889) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 2021889) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 2021889) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 2021889) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 2021889) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 2021889) Heitman,J.3 (bases 1 to 2021889) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 2021889) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085913.1 6 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085913.1.raw linear CBS 11374 biogas reactor 1816837 genomic DNA Kwoniella shivajii 1 (bases 1 to 1816837) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 1816837) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 1816837) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 1816837) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 1816837) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 1816837) Heitman,J.3 (bases 1 to 1816837) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 1816837) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085914.1 7 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085914.1.raw linear CBS 11374 biogas reactor 1800561 genomic DNA Kwoniella shivajii 1 (bases 1 to 1800561) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 1800561) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 1800561) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 1800561) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 1800561) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 1800561) Heitman,J.3 (bases 1 to 1800561) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 1800561) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085915.1 8 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085915.1.raw linear CBS 11374 biogas reactor 1575365 genomic DNA Kwoniella shivajii 1 (bases 1 to 1575365) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 1575365) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 1575365) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 1575365) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 1575365) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 1575365) Heitman,J.3 (bases 1 to 1575365) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 1575365) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085916.1 9 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085916.1.raw linear CBS 11374 biogas reactor 1526928 genomic DNA Kwoniella shivajii 1 (bases 1 to 1526928) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 1526928) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 1526928) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 1526928) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 1526928) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 1526928) Heitman,J.3 (bases 1 to 1526928) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 1526928) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085917.1 10 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085917.1.raw linear CBS 11374 biogas reactor 1511845 genomic DNA Kwoniella shivajii 1 (bases 1 to 1511845) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 1511845) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 1511845) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 1511845) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 1511845) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 1511845) Heitman,J.3 (bases 1 to 1511845) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 1511845) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085918.1 11 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085918.1.raw linear CBS 11374 biogas reactor 1483245 genomic DNA Kwoniella shivajii 1 (bases 1 to 1483245) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 1483245) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 1483245) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 1483245) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 1483245) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 1483245) Heitman,J.3 (bases 1 to 1483245) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 1483245) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii NC_085919.1 12 United Kingdom: Devon, North Okehampton, Wyke Research 07-FEB-2024 BioProject: PRJNA1073834 BioSample: SAMN16387706BioProject: PRJNA1073834 BioSample: SAMN16387706 Assembly: GCF_035658355.1 NC_085919.1.raw linear CBS 11374 biogas reactor 87600 genomic DNA Kwoniella shivajii 1 (bases 1 to 87600) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S.,1 (bases 1 to 87600) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J.1 (bases 1 to 87600) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution1 (bases 1 to 87600) Mohammad,A.W., Gnirke,A., Yurkov,A.M., Nowrousian,M., Sun,S., Cuomo,C.A. and Heitman,J. pathogenesis evolution and contrasting modes of karyotype evolution via chromosome fusion or intercentromeric recombination2 (bases 1 to 87600) Information, NIH, Bethesda, MD 20894, USA3 (bases 1 to 87600) Heitman,J.3 (bases 1 to 87600) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building,3 (bases 1 to 87600) Heitman,J. Microbiology, Duke University, DUMC Box 3546, 317 CARL Building, Durham, NC 27710, USA /space23/rsat/rsat/public_html/data/genomes/Kwoniella_shivajii_GCF_035658355.1_ASM3565835v1/genome 564305 CON DNA culture from type material of Cryptococcus shivajii