-- dump date 20120503_203648 -- class Genbank::repeat_region -- table repeat_region_note -- id note 185431004102 RNaseH domain 185431006484 TTAGGG 185431006485 telomeric repeat hexamer TTAGGG 185431006486 telomeric repeat hexamer TTAGGG 185431006487 telomeric repeat hexamer TTAGGG 185431006488 telomeric repeat hexamer TTAGGG 185431006489 telomeric repeat hexamer TTAGGG 185431006490 telomeric repeat hexamer TTAGGG 185431006491 telomeric repeat hexamer TTAGGG 185431006492 telomeric repeat hexamer TTAGGG 185431006493 telomeric repeat hexamer TTAGGG 185431006494 telomeric repeat hexamer TTAGGG 185431006495 telomeric repeat hexamer TTAGGG 185431006496 telomeric repeat hexamer TTAGGG 185431006497 telomeric repeat hexamer TTAGGG 185431006498 telomeric repeat hexamer TTAGGG 185431006499 telomeric repeat hexamer TTAGGG 185431006500 telomeric repeat hexamer TTAGGG 185431006501 telomeric repeat hexamer TTAGGG 185431006502 TAA 185431006503 telomeric repeat hexamer TTAGGG 185431006504 telomeric repeat hexamer TTAGGG 185431006505 telomeric repeat hexamer TTAGGG 185431006506 telomeric repeat hexamer TTAGGG 185431006508 telomeric repeat hexamer TTAGGG 185431006509 telomeric repeat hexamer TTAGGG 185431006510 inverted telomeric repeat hexamer CCCTAA 185431006511 ingi (pers. comm. F. Bringaud) 185431006512 RIME-B 185431006513 RIME-A 185431006514 inverted telomeric repeat hexamer CCCTAA 185431006515 ingi element inserted into RHS5 chimera to produce RHS5-ingi degenerate chimeric pseudogene 185431006516 RIME-A 185431006517 RIME-B 185431006518 RIME-B 185431006519 RIME-A 185431006520 inverted telomeric repeat hexamer CCCTAA 185431006521 inverted telomeric repeat hexamer CCCTAA 185431006522 ingi element apparently inserted into a pseudogene for a retrotransposon hot spot protein, RHS2-e (an RHS2-RHS6 chimera); ingi truncated (5') (pers. comm. F. Bringaud) 185431006523 RIME-A 185431006524 RIME-B 185431006525 RIME-B 185431006526 RIME-A 185431006527 ingi element; part of RHS1-ingi chimera; ingi - one point mutation (pers. comm. F. Bringaud) 185431006528 RIME-B 185431006529 RIME-A 185431006530 telomeric repeat hexamer TTAGGG 185431006531 inverted telomeric repeat hexamer CCCTAA 185431006532 ingi element fused to to 3'-end of trancated RHS5 sequence, forming RHS5-ingi chimeric pseudogene; ingi -several point mutations (pers. comm. F. Bringaud) 185431006533 RIME-A 185431006534 RIME-B 185431006535 ingi. truncated (3') (pers. comm. F. Bringaud) 185431006536 RIME-A 185431006537 RIME 185431006538 DIRE 185431006539 132 bp repeat 185431006540 132 bp repeat 185431006541 telomeric repeat hexamer TTAGGG 185431006542 telomeric repeat hexamer TTAGGG 185431006543 42 bp repeat (MS42); highly polymorphic between isolates. Array contains approx. 17.8 repeat units; highly conserved with 9 purine and 1 pyrimidine substitution 185431006544 inverted telomeric repeat hexamer CCCTAA 185431006545 telomeric repeat hexamer TTAGGG 185431006546 telomeric repeat hexamer TTAGGG 185431006547 telomeric repeat hexamer TTAGGG 185431006548 telomeric repeat hexamer TTAGGG 185431006549 telomeric repeat hexamer TTAGGG 185431006550 telomeric repeat hexamer TTAGGG 185431006551 inverted telomeric repeat hexamer CCCTAA 185431006552 inverted telomeric repeat hexamer CCCTAA 185431006553 inverted telomeric repeat hexamer CCCTAA 185431006554 telomeric repeat hexamer TTAGGG 185431006555 inverted telomeric repeat hexamer CCCTAA 185431006556 telomeric repeat hexamer TTAGGG 185431006557 inverted telomeric repeat hexamer CCCTAA 185431006558 inverted telomeric repeat hexamer CCCTAA 185431006559 telomeric repeat hexamer TTAGGG 185431006560 inverted telomeric repeat hexamer CCCTAA 185431006561 inverted telomeric repeat hexamer CCCTAA 185431006562 telomeric repeat hexamer TTAGGG 185431006563 inverted telomeric repeat hexamer CCCTAA 185431006564 telomeric repeat hexamer TTAGGG 185431006565 inverted telomeric repeat hexamer CCCTAA 185431006568 inverted telomeric repeat hexamer CCCTAA 185431006569 inverted telomeric repeat hexamer CCCTAA 185431006570 RIME sequence at 3' end of Trypanosoma brucei tubulin cluster (EMBL:M27843) (1741 bp) Blastn scores: E()=e-119, id=99% (query, 1-226:subject, 34-259); RIME-A (DIRE). Degenerate (pers. comm. F. Bringaud) 185431006571 DIRE - TUBIS (pers. comm. F. Bringaud) 185431006572 inverted telomeric repeat hexamer CCCTAA 185431006573 inverted telomeric repeat hexamer CCCTAA 185431006574 RIME-A. Truncated (5') (pers. comm. F. Bringaud) 185431006577 telomeric repeat hexamer TTAGGG 185431006578 inverted repeat 1; hit to TBINGIC_3, RIME from M16068 copy A, 253bp 190..253 score: 239 percent id: 85.94; DIRE 185431006579 DIRE (pers. comm. F. Bringaud) 185431006580 DIRE (pers. comm. F. Bringaud) 185431006581 inverted telomeric repeat hexamer CCCTAA 185431006582 inverted repeat 2; hit to TBINGIC_3, RIME from M16068 copy A, 253bp 190..253 score: 230 percent id: 84.38 185431006583 inverted telomeric repeat hexamer CCCTAA 185431006584 inverted telomeric repeat hexamer CCCTAA 185431006585 inverted telomeric repeat hexamer CCCTAA 185431006586 telomeric repeat hexamer TTAGGG 185431006587 inverted telomeric repeat hexamer CCCTAA 185431006588 inverted telomeric repeat hexamer CCCTAA 185431006589 inverted telomeric repeat hexamer CCCTAA 185431006590 inverted telomeric repeat hexamer CCCTAA 185431006591 inverted telomeric repeat hexamer CCCTAA 185431006592 telomeric repeat hexamer TTAGGG 185431006593 telomeric repeat hexamer TTAGGG 185431006594 inverted telomeric repeat hexamer CCCTAA 185431006595 telomeric repeat hexamer TTAGGG 185431006596 telomeric repeat hexamer TTAGGG 185431006597 telomeric repeat hexamer TTAGGG 185431006598 inverted telomeric repeat hexamer CCCTAA 185431006599 inverted telomeric repeat hexamer CCCTAA 185431006600 telomeric repeat hexamer TTAGGG 185431006601 inverted telomeric repeat hexamer CCCTAA 185431006602 RIME-A; similar to RIME from Trypanosoma brucei DNA for trypanosome repeated sequence TRS 1.6 (EMBL:X05710) (6826 bp); Blastn score=527, E()=e-147, id=96% (query, 5-314:subject, 714-1023) 185431006603 ingi; Similar to Trypanosoma brucei DNA for trypanosome repeated sequence TRS 1.6 (EMBL:X05710) (6826 bp); Blastn score=6611 E()=0.0, id=96%; ingi - one point mutation (pers. comm. F. Bringaud) 185431006604 RIME-B 185431006605 repeat region, 33.21% GC content 185431006606 RIME-A (ingi); similar to Trypanosoma brucei ribosomal mobile element (RIME) in rRNA gene (EMBL:K01801) (1402 bp); Blastn score=389, E()=e-106, Id=95% 185431006607 ingi; Similar to T. brucei repetitive element ingi3 EMBL:M16068 (5204 bp); Blastn score=4278, E()=0.0, Id=95%; several point mutations (pers. comm. F. Bringaud) 185431006608 RIME-B (ingi); similar to Trypanosoma brucei ribosomal mobile element (RIME) in rRNA (EMBL:K01801) (1402 bp); Blastn score=331, E()=1e-88, Id=93% 185431006609 RIME; Similar to Trypanosoma brucei ribosomal mobile element (RIME) in rRNA gene (EMBL:K01801) (1402 bp); Blastn score=256, E()=5e-66, Id=90% 185431006610 RIME-A 185431006611 DIRE (pers. comm. F. Bringaud) 185431006612 DIRE (pers. comm. F. Bringaud) 185431006613 DIRE (pers. comm. F. Bringaud) 185431006614 inverted telomeric repeat hexamer CCCTAA 185431006615 telomeric repeat hexamer TTAGGG 185431006616 telomeric repeat hexamer TTAGGG 185431006617 inverted telomeric repeat hexamer CCCTAA 185431006618 telomeric repeat hexamer TTAGGG 185431006619 inverted telomeric repeat hexamer CCCTAA 185431006620 telomeric repeat hexamer TTAGGG 185431006621 inverted telomeric repeat hexamer CCCTAA 185431006622 telomeric repeat hexamer TTAGGG 185431006623 telomeric repeat hexamer TTAGGG 185431006624 inverted telomeric repeat hexamer CCCTAA 185431006625 inverted telomeric repeat hexamer CCCTAA 185431006626 telomeric repeat hexamer TTAGGG 185431006627 inverted telomeric repeat hexamer CCCTAA 185431006628 telomeric repeat hexamer TTAGGG 185431006629 telomeric repeat hexamer TTAGGG 185431006630 inverted telomeric repeat hexamer CCCTAA 185431006631 telomeric repeat hexamer TTAGGG 185431006632 inverted telomeric repeat hexamer CCCTAA 185431006633 telomeric repeat hexamer TTAGGG 185431006634 inverted telomeric repeat hexamer CCCTAA 185431006635 telomeric repeat hexamer TTAGGG 185431006636 telomeric repeat hexamer TTAGGG 185431006637 telomeric repeat hexamer TTAGGG 185431006638 inverted telomeric repeat hexamer CCCTAA 185431006639 telomeric repeat hexamer TTAGGG 185431006640 telomeric repeat hexamer TTAGGG 185431006641 telomeric repeat hexamer TTAGGG 185431006642 ingi. Several point mutations (pers. comm. F. Bringaud) 185431006643 RIME-A 185431006644 RIME-B 185431006645 telomeric repeat hexamer TTAGGG 185431006646 inverted telomeric repeat hexamer CCCTAA 185431006647 telomeric repeat hexamer TTAGGG 185431006648 telomeric repeat hexamer TTAGGG 185431006649 telomeric repeat hexamer TTAGGG 185431006650 TAA 185431006652 telomeric repeat hexamer TTAGGG 185431006653 inverted telomeric repeat hexamer CCCTAA 185431006654 core of the GC-rich subtelomeric repeat 185431006655 inverted telomeric repeat hexamer CCCTAA 185431006656 core of the GC-rich subtelomeric repeat 185431006657 inverted telomeric repeat hexamer CCCTAA 185431006658 core of the GC-rich subtelomeric repeat 185431006659 inverted telomeric repeat hexamer CCCTAA 185431006660 core of the GC-rich subtelomeric repeat 185431006661 telomeric repeat hexamer TTAGGG 185431006662 telomeric repeat hexamer TTAGGG 185431006663 inverted telomeric repeat hexamer CCCTAA 185431006664 core of the GC-rich subtelomeric repeat 185431006665 core of the GC-rich subtelomeric repeat 185431006666 inverted telomeric repeat hexamer CCCTAA 185431006667 core of the GC-rich subtelomeric repeat 185431006668 inverted telomeric repeat hexamer CCCTAA 185431006669 core of the GC-rich subtelomeric repeat 185431006670 TTAGGG 185431006671 telomeric repeat hexamer TTAGGG 185431006672 telomeric repeat hexamer TTAGGG 185431006673 telomeric repeat hexamer TTAGGG 185431006674 telomeric repeat hexamer TTAGGG 185431006675 telomeric repeat hexamer TTAGGG 185431006676 telomeric repeat hexamer TTAGGG 185431006677 telomeric repeat hexamer TTAGGG 185431006678 telomeric repeat hexamer TTAGGG 185431006679 telomeric repeat hexamer TTAGGG 185431006680 telomeric repeat hexamer TTAGGG 185431006681 telomeric repeat hexamer TTAGGG 185431006682 telomeric repeat hexamer TTAGGG 185431006683 telomeric repeat hexamer TTAGGG 185431006684 telomeric repeat hexamer TTAGGG 185431006685 telomeric repeat hexamer TTAGGG 185431006686 telomeric repeat hexamer TTAGGG 185431006687 telomeric repeat hexamer TTAGGG 185431006688 telomeric repeat hexamer TTAGGG 185431006689 telomeric repeat hexamer TTAGGG 185431006690 telomeric repeat hexamer TTAGGG 185431006691 telomeric repeat hexamer TTAGGG 185431006692 telomeric repeat hexamer TTAGGG 185431006693 telomeric repeat hexamer TTAGGG 185431006694 telomeric repeat hexamer TTAGGG 185431006695 telomeric repeat hexamer TTAGGG 185431006696 telomeric repeat hexamer TTAGGG 185431006697 telomeric repeat hexamer TTAGGG 185431006698 telomeric repeat hexamer TTAGGG 185431006699 telomeric repeat hexamer TTAGGG 185431006700 telomeric repeat hexamer TTAGGG 185431006701 telomeric repeat hexamer TTAGGG 185431006702 telomeric repeat hexamer TTAGGG 185431006703 telomeric repeat hexamer TTAGGG 185431006704 telomeric repeat hexamer TTAGGG 185431006705 telomeric repeat hexamer TTAGGG 185431006706 telomeric repeat hexamer TTAGGG 185431006707 telomeric repeat hexamer TTAGGG 185431006708 telomeric repeat hexamer TTAGGG 185431006709 telomeric repeat hexamer TTAGGG 185431006710 telomeric repeat hexamer TTAGGG 185431006711 telomeric repeat hexamer TTAGGG 185431006712 telomeric repeat hexamer TTAGGG 185431006713 telomeric repeat hexamer TTAGGG 185431006714 telomeric repeat hexamer TTAGGG 185431006715 telomeric repeat hexamer TTAGGG 185431006716 telomeric repeat hexamer TTAGGG 185431006717 telomeric repeat hexamer TTAGGG 185431006718 telomeric repeat hexamer TTAGGG 185431006719 telomeric repeat hexamer TTAGGG 185431006720 telomeric repeat hexamer TTAGGG 185431006721 telomeric repeat hexamer TTAGGG 185431006722 telomeric repeat hexamer TTAGGG 185431006723 telomeric repeat hexamer TTAGGG 185431006724 telomeric repeat hexamer TTAGGG 185431006725 telomeric repeat hexamer TTAGGG 185431006726 telomeric repeat hexamer TTAGGG 185431006727 telomeric repeat hexamer TTAGGG 185431006728 telomeric repeat hexamer TTAGGG 185431006729 telomeric repeat hexamer TTAGGG 185431006730 telomeric repeat hexamer TTAGGG 185431006731 telomeric repeat hexamer TTAGGG 185431006732 telomeric repeat hexamer TTAGGG 185431006733 telomeric repeat hexamer TTAGGG 185431006734 telomeric repeat hexamer TTAGGG 185431006735 telomeric repeat hexamer TTAGGG 185431006736 telomeric repeat hexamer TTAGGG 185431006737 telomeric repeat hexamer TTAGGG 185431006738 telomeric repeat hexamer TTAGGG 185431006739 telomeric repeat hexamer TTAGGG 185431006740 telomeric repeat hexamer TTAGGG 185431006741 telomeric repeat hexamer TTAGGG 185431006742 telomeric repeat hexamer TTAGGG 185431006743 telomeric repeat hexamer TTAGGG 185431006744 telomeric repeat hexamer TTAGGG 185431006745 telomeric repeat hexamer TTAGGG 185431006746 telomeric repeat hexamer TTAGGG 185431006747 telomeric repeat hexamer TTAGGG 185431006748 telomeric repeat hexamer TTAGGG 185431006749 telomeric repeat hexamer TTAGGG 185431006750 telomeric repeat hexamer TTAGGG